From 3cd12351bc21c00a9121fe1b0576b3ffe96f43aa Mon Sep 17 00:00:00 2001 From: Natalie Thurlby Date: Sat, 27 Mar 2021 10:06:29 +0000 Subject: [PATCH 01/21] refactoring uberon-py --- CONTRIBUTING.md | 6 ++ setup.pyc | Bin 0 -> 677 bytes uberon_py/obo.py | 200 +++++++++++++++++++++++++---------------------- 3 files changed, 113 insertions(+), 93 deletions(-) create mode 100644 CONTRIBUTING.md create mode 100644 setup.pyc diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md new file mode 100644 index 0000000..ef7fb1d --- /dev/null +++ b/CONTRIBUTING.md @@ -0,0 +1,6 @@ +# Contributing + +## Distribution +local development: +`python3 setup.py sdist` +`pip3 install -e .` \ No newline at end of file diff --git a/setup.pyc b/setup.pyc new file mode 100644 index 0000000000000000000000000000000000000000..71301d57ade6a65d2972b966d598d683b22069d1 GIT binary patch literal 677 zcmZuu!E)0u5M3o{+N4Pdg>Yj=$ILJ|<;p-QGn5$)?IDy)FOK3>Z4p~C(z@VtKba4J zm76IrgKVvKwNGzXdi|f%@!NOvbq2dJ=k<(dDA^$Y0@$krTniAo2iSu<0bl!Y2XH+A zEdcv~1Hip#a}I}q`+x_4Bfv4>A>afw1EzpSfR6xYfR6!>0iOUqWuCFXIecC`X3O;Q_Otic>TbzmL^CgcO3G@dHJo;zBM+NRA~97Do8>m=^wPLl;5KJZfW+PGt}qJ#+Ts*uLV&ZUN4uq zp`zI&nX8tUid1RzRl%4|yS#7yC3i7oylS`^ACA~%9K+-eN0Wzasw-v65c{?FTnUp$ zva^jhf$x^6ENQmg6P6~^mNke?U3|K_T*SAeF`G^pa;^+3j-V68)qL5gj@JrTQG!Lx i{V^eG)SXOrg1xC6Hl;p|f`_R8tasd-h>;ln^Zf?yimPY< literal 0 HcmV?d00001 diff --git a/uberon_py/obo.py b/uberon_py/obo.py index e63cf81..7f93439 100644 --- a/uberon_py/obo.py +++ b/uberon_py/obo.py @@ -3,11 +3,11 @@ import time import urllib.request as request import os - +import logging # TODO: Add warnings/logging -def get_obo(data_name, out_dir = '../data/'): +def get_obo(data_name, out_dir='../data/'): # TODO: load from file: uberon_urls = { 'sensory-minimal':'http://ontologies.berkeleybop.org/uberon/subsets/sensory-minimal.obo', @@ -38,7 +38,7 @@ def get_obo(data_name, out_dir = '../data/'): class Obo: - def __init__(self,file_loc,ont_ids): + def __init__(self, file_loc, ont_ids, root_terms=None): """ Loads ontology from obo file into a dictionary of dictionaries. @@ -49,7 +49,7 @@ def __init__(self,file_loc,ont_ids): self.file_loc = file_loc self.ont_ids = ont_ids self.ont = self.load_obo() - + self.root_terms = root_terms def load_obo(self): """ @@ -84,7 +84,7 @@ def load_obo(self): term['name'] = name elif 'comment:' in line[0]: - comment = line[1] + comment = ' '.join(line[1:]) term['comment'] = comment elif 'namespace:' in line[0]: @@ -111,6 +111,7 @@ def load_obo(self): value = line[1] elif line[0] == 'relationship:': + # TODO: tidy this the hell up if line[1] == 'derives_from': relation = 'derives_from' @@ -132,11 +133,20 @@ def load_obo(self): relation = 'never_in_taxon' value = line[2] + elif line[1] == 'present_in_taxon': + relation = 'present_in_taxon' + value = line[2] + elif line[1] == 'only_in_taxon': relation = 'only_in_taxon' value = line[2] + elif line[1] == 'dubious_for_taxon': + relation = 'dubious_for_taxon' + value = line[2] + else: + # TODO: add logging here relation = 'related_to' value = line[2] @@ -205,8 +215,8 @@ def load_obo(self): term[ontID] = [value] return terms - def map_tissue_name_to_uberon(self,design_df,tissue_name_column): - #TODO: Make an UBERON class that is a child of Ontolgy + def map_tissue_name_to_uberon(self, design_df, tissue_name_column): + # TODO: Make an UBERON class that is a child of Ontolgy """Assumes that the sample name is the index of the design_df""" samples_names = design_df[[tissue_name_column]].dropna() @@ -221,13 +231,13 @@ def map_tissue_name_to_uberon(self,design_df,tissue_name_column): except: synonyms = [] if (self.ont[uberon_term]['name'].lower() == tissue_name) or (tissue_name in synonyms): - name2uberon.append([sample_id,uberon_term,tissue_name]) + name2uberon.append([sample_id, uberon_term, tissue_name]) found = True - if found == False: - name2uberon.append([sample_id,None,tissue_name]) + if not found: + name2uberon.append([sample_id, None, tissue_name]) - name2uberon = pd.DataFrame(name2uberon, columns = ['Sample ID','UBERON','name matched on']) - name2uberon=name2uberon.set_index('Sample ID') + name2uberon = pd.DataFrame(name2uberon, columns=['Sample ID', 'UBERON', 'name matched on']) + name2uberon = name2uberon.set_index('Sample ID') return name2uberon def get_relations(self,relations_of_interest,source_terms,target_term,ont): @@ -246,93 +256,97 @@ def get_relations(self,relations_of_interest,source_terms,target_term,ont): return self.Relations(relations_of_interest,source_terms,target_term,ont) - def relation_string_2_name_string(self,relation_string): - for i, subrelation in enumerate(relation_string.split('.')): - if i == 0: - name_string = self.ont[subrelation]['name'] - continue - relation = ' "' + '_'.join(subrelation.split('_')[:-1]) + '" ' - term = subrelation.split('_')[-1] +def relation_string_2_name_string(ont, relation_string): + for i, subrelation in enumerate(relation_string.split('.')): + if i == 0: + name_string = ont[subrelation]['name'] + continue + relation = ' "' + '_'.join(subrelation.split('_')[:-1]) + '" ' + term = subrelation.split('_')[-1] - name_string += relation + self.ont[term]['name'] - return name_string - + name_string += relation + ont[term]['name'] + return name_string - class Relations: - def __init__(self,relations_of_interest,source_terms,target_term,ont,print_=False): - """ - Attributes: - relations_of_interest: a list of relations that are relevant for finding relationship between the source and target term, e.g. ['is_a','is_model_for'] - source_terms: terms that we wish to look for relations from, list of the form [source_term_1, source_term_2, etc] such that we wish to find relationships of the form "source_term is_a target_term" or "source_term is_a other_term is_a target_term". - target_term: term that we wish to look for relations to, e.g. source_term is_a target_term. Term string, either specific (e.g. 'FF:0000001') or general (e.g. 'FF') - relations: pandas dataframe with source_terms as index and relation_strings (or NaN) in relation_string column. - """ - self.relations_of_interest = relations_of_interest - self.source_terms = source_terms - self.target_term = target_term - self.relations = self.calculate(ont,print_) - - def calculate(self,ont,print_): - relations = [] - for source_term in self.source_terms: - relation_strings =[source_term] +class Relations: + def __init__(self,relations_of_interest,source_terms,target_term,ont,excluded_terms=None,print_=False): + """ + Attributes: + relations_of_interest: a list of relations that are relevant for finding relationship between the source and target term, e.g. ['is_a','is_model_for'] + source_terms: terms that we wish to look for relations from, list of the form [source_term_1, source_term_2, etc] such that we wish to find relationships of the form "source_term is_a target_term" or "source_term is_a other_term is_a target_term". + target_term: term that we wish to look for relations to, e.g. source_term is_a target_term. Term string, either specific (e.g. 'FF:0000001') or general (e.g. 'FF') + relations: pandas dataframe with source_terms as index and relation_strings (or NaN) in relation_string column. + """ + self.relations_of_interest = relations_of_interest + self.source_terms = source_terms + self.target_term = target_term + if not excluded_terms: + excluded_terms = [] + self.excluded_terms = excluded_terms + + self.relations = self.calculate(ont, print_) - #we stop looking for a term, once we find a relation to the target_term or we we don't know where else to look: - relation_found = False - unchanged = False - - while (relation_found == False) and (not unchanged == True): - if print_: - time.sleep(0.2) - print(relation_strings) - new_relation_strings = [] - for relation_string in relation_strings: - most_recent_term = relation_string.split('_')[-1] - for relation in self.relations_of_interest: - #Get new terms to check. - try: - new_terms = ont[most_recent_term][relation] - except: - new_terms = [] - - #For each new term, check for wanted relation. - for new_term in new_terms: - if new_term in relation_string: - #cyclic relationship: - print('cyclic relationship',relation_string + '.' + relation + '_' + new_term) - continue - new_relation_string = relation_string + '.' + relation + '_' + new_term - new_relation_strings.append(new_relation_string) - - #if target_term is list of target terms: - if isinstance(self.target_term,list): - for target_term in self.target_term: - if target_term == new_term: - relation_found = True - #if term is specific: - elif (':' in self.target_term): - if self.target_term == new_term: - relation_found = True - break - #if term is general: - else: - if new_term.split(':')[0] == self.target_term: - relation_found = True - break - if relation_found: + + def calculate(self,ont,print_): + relations = [] + for source_term in self.source_terms: + relation_strings =[source_term] + + #we stop looking for a term, once we find a relation to the target_term or we we don't know where else to look: + relation_found = False + unchanged = False + + while (relation_found == False) and (not unchanged == True): + if print_: + time.sleep(0.2) + print(relation_strings) + new_relation_strings = [] + for relation_string in relation_strings: + most_recent_term = relation_string.split('_')[-1] + for relation in self.relations_of_interest: + #Get new terms to check. + try: + new_terms = ont[most_recent_term][relation] + except: + new_terms = [] + + #For each new term, check for wanted relation. + for new_term in new_terms: + if new_term in self.excluded_terms: + continue + + if new_term in relation_string: + #cyclic relationship: + logging.info('cyclic relationship',relation_string + '.' + relation + '_' + new_term) + continue + new_relation_string = relation_string + '.' + relation + '_' + new_term + new_relation_strings.append(new_relation_string) + + # CHECK IF NEW TERM IS (ONE OF) TARGET TERM(S) + #if target_term is list of specific terms: + if isinstance(self.target_term,list) and (new_term in self.target_term): + relation_found = True + #if target_term is one specific term + elif (':' in self.target_term) and (self.target_term == new_term): + relation_found = True + break + #if term is general: + elif new_term.split(':')[0] == self.target_term: + relation_found = True break if relation_found: break - - if new_relation_strings == []: - unchanged = True - relation_strings = new_relation_strings - - if relation_found: - relations.append(new_relation_string) - else: - relations.append(np.nan) + if relation_found: + break + + if new_relation_strings == []: + unchanged = True + relation_strings = new_relation_strings - return pd.DataFrame(relations, index = self.source_terms) + if relation_found: + relations.append(new_relation_string) + else: + relations.append(np.nan) + + return pd.DataFrame(relations, index = self.source_terms) From e7f7d9a75b739256279d706c91fcc760037be90b Mon Sep 17 00:00:00 2001 From: Natalie Thurlby Date: Sat, 27 Mar 2021 10:14:55 +0000 Subject: [PATCH 02/21] updated requirements --- requirements-dev.txt | 3 +++ requirements.txt | 15 ++------------- 2 files changed, 5 insertions(+), 13 deletions(-) create mode 100644 requirements-dev.txt diff --git a/requirements-dev.txt b/requirements-dev.txt new file mode 100644 index 0000000..e9eb009 --- /dev/null +++ b/requirements-dev.txt @@ -0,0 +1,3 @@ +setuptools +sphinx +pytest \ No newline at end of file diff --git a/requirements.txt b/requirements.txt index 64ddd5e..ec22e69 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,14 +1,3 @@ -# Requirements automatically generated by pigar. -# https://github.com/damnever/pigar +numpy +pandas -# uberon_py/obo.py: 2 -numpy == 1.16.0 - -# uberon_py/obo.py: 1 -pandas == 0.24.1 - -# tests/basic_test.py: 1 -pytest == 4.5.0 - -# setup.py: 1 -setuptools == 40.8.0 From 5492cdc120f7114f6a81aae04172492dfda3c30b Mon Sep 17 00:00:00 2001 From: Natalie Thurlby Date: Sat, 27 Mar 2021 10:55:57 +0000 Subject: [PATCH 03/21] Added warnings/logging, removed print statements, updated to f-strings --- uberon_py/obo.py | 39 +++++++++++++++++++++++---------------- 1 file changed, 23 insertions(+), 16 deletions(-) diff --git a/uberon_py/obo.py b/uberon_py/obo.py index 7f93439..1d00ccd 100644 --- a/uberon_py/obo.py +++ b/uberon_py/obo.py @@ -4,36 +4,44 @@ import urllib.request as request import os import logging -# TODO: Add warnings/logging +# TODO: Add warnings/logging (remove all print statements) def get_obo(data_name, out_dir='../data/'): # TODO: load from file: + # TODO: Allow overwrite existing file + uberon_urls = { 'sensory-minimal':'http://ontologies.berkeleybop.org/uberon/subsets/sensory-minimal.obo', 'uberon-extended': 'http://purl.obolibrary.org/obo/uberon/ext.obo', 'uberon-basic': 'http://purl.obolibrary.org/obo/uberon.obo', } + if data_name not in uberon_urls.keys(): + supported_list = '\n'.join(uberon_urls.keys()) + logging.error(f'`data_name` {data_name} not in supported list:\n{supported_list}') + url = uberon_urls[data_name] file_name = (os.path.basename(url)) - out_file = os.path.join(out_dir,file_name) + out_file = os.path.join(out_dir, file_name) - if (not os.path.isdir(out_dir)): + if not os.path.isdir(out_dir): os.mkdir(out_dir) + logging.info(f'Created directory {out_dir}.') if os.path.isfile(out_file): - print ('File already exists at location: ',os.path.abspath(out_file)) + logging.warning(f'File already exists at location: {os.path.abspath(out_file)}. Cancelling download.') return out_file + # TODO: make sure behaviour is sensible if url doesn't exist. (Write test). file_data = request.urlopen(url) data_to_write = file_data.read() - print("Downloaded " + data_name + " from: " + url) + logging.info(f'Downloaded {data_name} from: {url}') with open(out_file, 'wb') as f: f.write(data_to_write) - print("Wrote " + data_name + "file to: " + os.path.abspath(out_file)) + logging.info(f'Wrote {data_name} file to: {os.path.abspath(out_file)}') return out_file @@ -240,7 +248,7 @@ def map_tissue_name_to_uberon(self, design_df, tissue_name_column): name2uberon = name2uberon.set_index('Sample ID') return name2uberon - def get_relations(self,relations_of_interest,source_terms,target_term,ont): + def get_relations(self, relations_of_interest, source_terms, target_term, ont): """ get_relations finds all relationships (based on relations_of_interest e.g. ['is_a']) between terms like source_term and terms like target_term, e.g. source_term is_a target_term. Returns a mapping between term and most specific (least number of steps) relationstring (if one exists, else NaN) for each relevant term in the ontology. @@ -269,7 +277,7 @@ def relation_string_2_name_string(ont, relation_string): class Relations: - def __init__(self,relations_of_interest,source_terms,target_term,ont,excluded_terms=None,print_=False): + def __init__(self, relations_of_interest, source_terms, target_term, ont, excluded_terms=None, print_=False): """ Attributes: relations_of_interest: a list of relations that are relevant for finding relationship between the source and target term, e.g. ['is_a','is_model_for'] @@ -277,17 +285,17 @@ def __init__(self,relations_of_interest,source_terms,target_term,ont,excluded_te target_term: term that we wish to look for relations to, e.g. source_term is_a target_term. Term string, either specific (e.g. 'FF:0000001') or general (e.g. 'FF') relations: pandas dataframe with source_terms as index and relation_strings (or NaN) in relation_string column. """ + # TODO: change _print, so that we just have logging.info of those levels. self.relations_of_interest = relations_of_interest self.source_terms = source_terms self.target_term = target_term if not excluded_terms: excluded_terms = [] self.excluded_terms = excluded_terms - self.relations = self.calculate(ont, print_) - - def calculate(self,ont,print_): + def calculate(self, ont, print_): + # TODO: write how this works. relations = [] for source_term in self.source_terms: relation_strings =[source_term] @@ -296,7 +304,7 @@ def calculate(self,ont,print_): relation_found = False unchanged = False - while (relation_found == False) and (not unchanged == True): + while (not relation_found) and (not unchanged): if print_: time.sleep(0.2) print(relation_strings) @@ -316,8 +324,7 @@ def calculate(self,ont,print_): continue if new_term in relation_string: - #cyclic relationship: - logging.info('cyclic relationship',relation_string + '.' + relation + '_' + new_term) + logging.info(f'cyclic relationship: {relation_string}.{relation}_{new_term}') continue new_relation_string = relation_string + '.' + relation + '_' + new_term new_relation_strings.append(new_relation_string) @@ -339,7 +346,7 @@ def calculate(self,ont,print_): if relation_found: break - if new_relation_strings == []: + if len(new_relation_strings) == 0: unchanged = True relation_strings = new_relation_strings @@ -348,5 +355,5 @@ def calculate(self,ont,print_): else: relations.append(np.nan) - return pd.DataFrame(relations, index = self.source_terms) + return pd.DataFrame(relations, index=self.source_terms) From 6bb3a0a25b6235b950a758df5060aec71b541a35 Mon Sep 17 00:00:00 2001 From: Natalie Thurlby Date: Sun, 28 Mar 2021 14:04:53 +0100 Subject: [PATCH 04/21] ont extends dict --- .gitignore | 1 + .travis.yml | 9 - CONTRIBUTING.md | 5 +- LICENSE.md | 21 + README.md | 20 +- conftest.py | 9 + docs/_build/doctrees/environment.pickle | Bin 10120 -> 0 bytes docs/_build/doctrees/index.doctree | Bin 4841 -> 0 bytes docs/_build/html/.buildinfo | 4 - docs/_build/html/_sources/index.rst.txt | 20 - docs/_build/html/_static/alabaster.css | 701 - docs/_build/html/_static/basic.css | 768 -- docs/_build/html/_static/custom.css | 1 - docs/_build/html/_static/doctools.js | 315 - .../html/_static/documentation_options.js | 11 - 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- "3.6" -# command to install dependencies -install: - - pip3 install -r requirements.txt -# command to run tests -script: - - pytest tests diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index ef7fb1d..8a80517 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -1,6 +1,3 @@ # Contributing -## Distribution -local development: -`python3 setup.py sdist` -`pip3 install -e .` \ No newline at end of file +[//]: # (TODO: Link to contributing in docs) \ No newline at end of file diff --git a/LICENSE.md b/LICENSE.md new file mode 100644 index 0000000..e02af10 --- /dev/null +++ b/LICENSE.md @@ -0,0 +1,21 @@ +MIT License + +Copyright (c) 2021 Natalie Thurlby + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in all +copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. \ No newline at end of file diff --git a/README.md b/README.md index f4f6b4e..4ef5d0d 100644 --- a/README.md +++ b/README.md @@ -1,28 +1,26 @@ -# `uberon_py`: a python package for the Uberon ontology -:construction: :construction: This package is under development :construction: :construction: - -## Summary -I created this package to be able to easily interrogate relationships between Uberon terms in Python. +# Ontolo**py** a python package for working with .obo files +:construction: This package is in development :construction: ## Installation -`uberon_py` is available on pip, and can be installed using: +Ontolopy is available on pip, and can be installed using: + ```bash -pip3 install uberon_py +pip install ontolopy ``` ## Usage Example usage: ```python -import uberon_py +import ontolopy # read an ontology in obo format -obo = uberon_py.Obo('path_to_file/uberon_ext.obo') +obo = ontolopy.Obo('path_to_file/uberon_ext.obo') # find relationships between terms of interest: # (in this case, are any of the source_terms, is_a or part_of the brain?) source_terms = ['UBERON:0003290','UBERON:0003369','UBERON:0003703'] target_terms = ['UBERON:0000955'] # brain term -relations_of_interest = 'is_a','part_of'] -relations = uberon_py.Relations(source_terms,target_terms,relations_of_interest[,obo.ont).relations +relations_of_interest = ['is_a','part_of'] +relations = ontolopy.Relations(source_terms,target_terms,relations_of_interest,obo.ont).relations ``` diff --git a/conftest.py b/conftest.py new file mode 100644 index 0000000..d41b72a --- /dev/null +++ b/conftest.py @@ -0,0 +1,9 @@ +# Adds tests marked with download won't run without pytest --download +def pytest_addoption(parser): + parser.addoption('--download', 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Multiple values per key are supported, - * it will always return arrays of strings for the value parts. - */ -jQuery.getQueryParameters = function(s) { - if (typeof s === 'undefined') - s = document.location.search; - var parts = s.substr(s.indexOf('?') + 1).split('&'); - var result = {}; - for (var i = 0; i < parts.length; i++) { - var tmp = parts[i].split('=', 2); - var key = jQuery.urldecode(tmp[0]); - var value = jQuery.urldecode(tmp[1]); - if (key in result) - result[key].push(value); - else - result[key] = [value]; - } - return result; -}; - -/** - * highlight a given string on a jquery object by wrapping it in - * span elements with the given class name. - */ -jQuery.fn.highlightText = function(text, className) { - function highlight(node, addItems) { - if (node.nodeType === 3) { - var val = node.nodeValue; - var pos = val.toLowerCase().indexOf(text); - if (pos >= 0 && - !jQuery(node.parentNode).hasClass(className) && - !jQuery(node.parentNode).hasClass("nohighlight")) { - var span; - var isInSVG = jQuery(node).closest("body, svg, foreignObject").is("svg"); - if (isInSVG) { - span = document.createElementNS("http://www.w3.org/2000/svg", "tspan"); - } else { - span = document.createElement("span"); - span.className = className; - } - span.appendChild(document.createTextNode(val.substr(pos, text.length))); - node.parentNode.insertBefore(span, node.parentNode.insertBefore( - document.createTextNode(val.substr(pos + text.length)), - node.nextSibling)); - node.nodeValue = val.substr(0, pos); - if (isInSVG) { - var rect = document.createElementNS("http://www.w3.org/2000/svg", "rect"); - var bbox = node.parentElement.getBBox(); - rect.x.baseVal.value = bbox.x; - rect.y.baseVal.value = bbox.y; - rect.width.baseVal.value = bbox.width; - rect.height.baseVal.value = bbox.height; - rect.setAttribute('class', className); - addItems.push({ - "parent": node.parentNode, - "target": rect}); - } - } - } - else if (!jQuery(node).is("button, select, textarea")) { - jQuery.each(node.childNodes, function() { - highlight(this, addItems); - }); - } - } - var addItems = []; - var result = this.each(function() { - highlight(this, addItems); - }); - for (var i = 0; i < addItems.length; ++i) { - jQuery(addItems[i].parent).before(addItems[i].target); - } - return result; -}; - -/* - * backward compatibility for jQuery.browser - * This will be supported until firefox bug is fixed. - */ -if (!jQuery.browser) { - jQuery.uaMatch = function(ua) { - ua = ua.toLowerCase(); - - var match = /(chrome)[ \/]([\w.]+)/.exec(ua) || - /(webkit)[ \/]([\w.]+)/.exec(ua) || - /(opera)(?:.*version|)[ \/]([\w.]+)/.exec(ua) || - /(msie) ([\w.]+)/.exec(ua) || - ua.indexOf("compatible") < 0 && /(mozilla)(?:.*? rv:([\w.]+)|)/.exec(ua) || - []; - - return { - browser: match[ 1 ] || "", - version: match[ 2 ] || "0" - }; - }; - jQuery.browser = {}; - jQuery.browser[jQuery.uaMatch(navigator.userAgent).browser] = true; -} - -/** - * Small JavaScript module for the documentation. - */ -var Documentation = { - - init : function() { - this.fixFirefoxAnchorBug(); - this.highlightSearchWords(); - this.initIndexTable(); - if (DOCUMENTATION_OPTIONS.NAVIGATION_WITH_KEYS) { - this.initOnKeyListeners(); - } - }, - - /** - * i18n support - */ - TRANSLATIONS : {}, - PLURAL_EXPR : function(n) { return n === 1 ? 0 : 1; }, - LOCALE : 'unknown', - - // gettext and ngettext don't access this so that the functions - // can safely bound to a different name (_ = Documentation.gettext) - gettext : function(string) { - var translated = Documentation.TRANSLATIONS[string]; - if (typeof translated === 'undefined') - return string; - return (typeof translated === 'string') ? translated : translated[0]; - }, - - ngettext : function(singular, plural, n) { - var translated = Documentation.TRANSLATIONS[singular]; - if (typeof translated === 'undefined') - return (n == 1) ? singular : plural; - return translated[Documentation.PLURALEXPR(n)]; - }, - - addTranslations : function(catalog) { - for (var key in catalog.messages) - this.TRANSLATIONS[key] = catalog.messages[key]; - this.PLURAL_EXPR = new Function('n', 'return +(' + catalog.plural_expr + ')'); - this.LOCALE = catalog.locale; - }, - - /** - * add context elements like header anchor links - */ - addContextElements : function() { - $('div[id] > :header:first').each(function() { - $('\u00B6'). - attr('href', '#' + this.id). - attr('title', _('Permalink to this headline')). - appendTo(this); - }); - $('dt[id]').each(function() { - $('\u00B6'). - attr('href', '#' + this.id). - attr('title', _('Permalink to this definition')). - appendTo(this); - }); - }, - - /** - * workaround a firefox stupidity - * see: https://bugzilla.mozilla.org/show_bug.cgi?id=645075 - */ - fixFirefoxAnchorBug : function() { - if (document.location.hash && $.browser.mozilla) - window.setTimeout(function() { - document.location.href += ''; - }, 10); - }, - - /** - * highlight the search words provided in the url in the text - */ - highlightSearchWords : function() { - var params = $.getQueryParameters(); - var terms = (params.highlight) ? params.highlight[0].split(/\s+/) : []; - if (terms.length) { - var body = $('div.body'); - if (!body.length) { - body = $('body'); - } - window.setTimeout(function() { - $.each(terms, function() { - body.highlightText(this.toLowerCase(), 'highlighted'); - }); - }, 10); - $('

' + _('Hide Search Matches') + '

') - .appendTo($('#searchbox')); - } - }, - - /** - * init the domain index toggle buttons - */ - initIndexTable : function() { - var togglers = $('img.toggler').click(function() { - var src = $(this).attr('src'); - var idnum = $(this).attr('id').substr(7); - $('tr.cg-' + idnum).toggle(); - if (src.substr(-9) === 'minus.png') - $(this).attr('src', src.substr(0, src.length-9) + 'plus.png'); - else - $(this).attr('src', src.substr(0, src.length-8) + 'minus.png'); - }).css('display', ''); - if (DOCUMENTATION_OPTIONS.COLLAPSE_INDEX) { - togglers.click(); - } - }, - - /** - * helper function to hide the search marks again - */ - hideSearchWords : function() { - $('#searchbox .highlight-link').fadeOut(300); - $('span.highlighted').removeClass('highlighted'); - }, - - /** - * make the url absolute - */ - makeURL : function(relativeURL) { - return DOCUMENTATION_OPTIONS.URL_ROOT + '/' + relativeURL; - }, - - /** - * get the current relative url - */ - getCurrentURL : function() { - var path = document.location.pathname; - var parts = path.split(/\//); - $.each(DOCUMENTATION_OPTIONS.URL_ROOT.split(/\//), function() { - if (this === '..') - parts.pop(); - }); - var url = parts.join('/'); - return path.substring(url.lastIndexOf('/') + 1, path.length - 1); - }, - - initOnKeyListeners: function() { - $(document).keydown(function(event) { - var activeElementType = document.activeElement.tagName; - // don't navigate when in search box or textarea - if (activeElementType !== 'TEXTAREA' && activeElementType !== 'INPUT' && activeElementType !== 'SELECT' - && !event.altKey && !event.ctrlKey && !event.metaKey && !event.shiftKey) { - switch (event.keyCode) { - case 37: // left - var prevHref = $('link[rel="prev"]').prop('href'); - if (prevHref) { - window.location.href = prevHref; - return false; - } - case 39: // right - var nextHref = $('link[rel="next"]').prop('href'); - if (nextHref) { - window.location.href = nextHref; - return false; - } - } - } - }); - } -}; - -// quick alias for translations -_ = Documentation.gettext; - -$(document).ready(function() { - Documentation.init(); -}); diff --git a/docs/_build/html/_static/documentation_options.js b/docs/_build/html/_static/documentation_options.js deleted file mode 100644 index ec75345..0000000 --- a/docs/_build/html/_static/documentation_options.js +++ /dev/null @@ -1,11 +0,0 @@ -var DOCUMENTATION_OPTIONS = { - URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'), - VERSION: '0.1.0', - LANGUAGE: 'None', - COLLAPSE_INDEX: false, - BUILDER: 'html', - FILE_SUFFIX: '.html', - HAS_SOURCE: true, - SOURCELINK_SUFFIX: '.txt', - NAVIGATION_WITH_KEYS: false -}; \ No newline at end of file diff --git a/docs/_build/html/_static/file.png b/docs/_build/html/_static/file.png deleted file mode 100644 index a858a410e4faa62ce324d814e4b816fff83a6fb3..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 286 zcmV+(0pb3MP)s`hMrGg#P~ix$^RISR_I47Y|r1 z_CyJOe}D1){SET-^Amu_i71Lt6eYfZjRyw@I6OQAIXXHDfiX^GbOlHe=Ae4>0m)d(f|Me07*qoM6N<$f}vM^LjV8( diff --git a/docs/_build/html/_static/jquery-3.4.1.js b/docs/_build/html/_static/jquery-3.4.1.js deleted file mode 100644 index 773ad95..0000000 --- a/docs/_build/html/_static/jquery-3.4.1.js +++ /dev/null @@ -1,10598 +0,0 @@ -/*! - * jQuery JavaScript Library v3.4.1 - * https://jquery.com/ - * - * Includes Sizzle.js - * https://sizzlejs.com/ - * - * Copyright JS Foundation and other contributors - * Released under the MIT license - * https://jquery.org/license - * - * Date: 2019-05-01T21:04Z - */ -( function( global, factory ) { - - "use strict"; - - if ( typeof module === "object" && typeof module.exports === "object" ) { - - // For CommonJS and CommonJS-like environments where a proper `window` - // is present, execute the factory and get jQuery. - // For environments that do not have a `window` with a `document` - // (such as Node.js), expose a factory as module.exports. - // This accentuates the need for the creation of a real `window`. - // e.g. var jQuery = require("jquery")(window); - // See ticket #14549 for more info. - module.exports = global.document ? - factory( global, true ) : - function( w ) { - if ( !w.document ) { - throw new Error( "jQuery requires a window with a document" ); - } - return factory( w ); - }; - } else { - factory( global ); - } - -// Pass this if window is not defined yet -} )( typeof window !== "undefined" ? window : this, function( window, noGlobal ) { - -// Edge <= 12 - 13+, Firefox <=18 - 45+, IE 10 - 11, Safari 5.1 - 9+, iOS 6 - 9.1 -// throw exceptions when non-strict code (e.g., ASP.NET 4.5) accesses strict mode -// arguments.callee.caller (trac-13335). But as of jQuery 3.0 (2016), strict mode should be common -// enough that all such attempts are guarded in a try block. -"use strict"; - -var arr = []; - -var document = window.document; - -var getProto = Object.getPrototypeOf; - -var slice = arr.slice; - -var concat = arr.concat; - -var push = arr.push; - -var indexOf = arr.indexOf; - -var class2type = {}; - -var toString = class2type.toString; - -var hasOwn = class2type.hasOwnProperty; - -var fnToString = hasOwn.toString; - -var ObjectFunctionString = fnToString.call( Object ); - -var support = {}; - -var isFunction = function isFunction( obj ) { - - // Support: Chrome <=57, Firefox <=52 - // In some browsers, typeof returns "function" for HTML elements - // (i.e., `typeof document.createElement( "object" ) === "function"`). - // We don't want to classify *any* DOM node as a function. - return typeof obj === "function" && typeof obj.nodeType !== "number"; - }; - - -var isWindow = function isWindow( obj ) { - return obj != null && obj === obj.window; - }; - - - - - var preservedScriptAttributes = { - type: true, - src: true, - nonce: true, - noModule: true - }; - - function DOMEval( code, node, doc ) { - doc = doc || document; - - var i, val, - script = doc.createElement( "script" ); - - script.text = code; - if ( node ) { - for ( i in preservedScriptAttributes ) { - - // Support: Firefox 64+, Edge 18+ - // Some browsers don't support the "nonce" property on scripts. - // On the other hand, just using `getAttribute` is not enough as - // the `nonce` attribute is reset to an empty string whenever it - // becomes browsing-context connected. - // See https://github.com/whatwg/html/issues/2369 - // See https://html.spec.whatwg.org/#nonce-attributes - // The `node.getAttribute` check was added for the sake of - // `jQuery.globalEval` so that it can fake a nonce-containing node - // via an object. - val = node[ i ] || node.getAttribute && node.getAttribute( i ); - if ( val ) { - script.setAttribute( i, val ); - } - } - } - doc.head.appendChild( script ).parentNode.removeChild( script ); - } - - -function toType( obj ) { - if ( obj == null ) { - return obj + ""; - } - - // Support: Android <=2.3 only (functionish RegExp) - return typeof obj === "object" || typeof obj === "function" ? - class2type[ toString.call( obj ) ] || "object" : - typeof obj; -} -/* global Symbol */ -// Defining this global in .eslintrc.json would create a danger of using the global -// unguarded in another place, it seems safer to define global only for this module - - - -var - version = "3.4.1", - - // Define a local copy of jQuery - jQuery = function( selector, context ) { - - // The jQuery object is actually just the init constructor 'enhanced' - // Need init if jQuery is called (just allow error to be thrown if not included) - return new jQuery.fn.init( selector, context ); - }, - - // Support: Android <=4.0 only - // Make sure we trim BOM and NBSP - rtrim = /^[\s\uFEFF\xA0]+|[\s\uFEFF\xA0]+$/g; - -jQuery.fn = jQuery.prototype = { - - // The current version of jQuery being used - jquery: version, - - constructor: jQuery, - - // The default length of a jQuery object is 0 - length: 0, - - toArray: function() { - return slice.call( this ); - }, - - // Get the Nth element in the matched element set OR - // Get the whole matched element set as a clean array - get: function( num ) { - - // Return all the elements in a clean array - if ( num == null ) { - return slice.call( this ); - } - - // Return just the one element from the set - return num < 0 ? this[ num + this.length ] : this[ num ]; - }, - - // Take an array of elements and push it onto the stack - // (returning the new matched element set) - pushStack: function( elems ) { - - // Build a new jQuery matched element set - var ret = jQuery.merge( this.constructor(), elems ); - - // Add the old object onto the stack (as a reference) - ret.prevObject = this; - - // Return the newly-formed element set - return ret; - }, - - // Execute a callback for every element in the matched set. - each: function( callback ) { - return jQuery.each( this, callback ); - }, - - map: function( callback ) { - return this.pushStack( jQuery.map( this, function( elem, i ) { - return callback.call( elem, i, elem ); - } ) ); - }, - - slice: function() { - return this.pushStack( slice.apply( this, arguments ) ); - }, - - first: function() { - return this.eq( 0 ); - }, - - last: function() { - return this.eq( -1 ); - }, - - eq: function( i ) { - var len = this.length, - j = +i + ( i < 0 ? len : 0 ); - return this.pushStack( j >= 0 && j < len ? [ this[ j ] ] : [] ); - }, - - end: function() { - return this.prevObject || this.constructor(); - }, - - // For internal use only. - // Behaves like an Array's method, not like a jQuery method. - push: push, - sort: arr.sort, - splice: arr.splice -}; - -jQuery.extend = jQuery.fn.extend = function() { - var options, name, src, copy, copyIsArray, clone, - target = arguments[ 0 ] || {}, - i = 1, - length = arguments.length, - deep = false; - - // Handle a deep copy situation - if ( typeof target === "boolean" ) { - deep = target; - - // Skip the boolean and the target - target = arguments[ i ] || {}; - i++; - } - - // Handle case when target is a string or something (possible in deep copy) - if ( typeof target !== "object" && !isFunction( target ) ) { - target = {}; - } - - // Extend jQuery itself if only one argument is passed - if ( i === length ) { - target = this; - i--; - } - - for ( ; i < length; i++ ) { - - // Only deal with non-null/undefined values - if ( ( options = arguments[ i ] ) != null ) { - - // Extend the base object - for ( name in options ) { - copy = options[ name ]; - - // Prevent Object.prototype pollution - // Prevent never-ending loop - if ( name === "__proto__" || target === copy ) { - continue; - } - - // Recurse if we're merging plain objects or arrays - if ( deep && copy && ( jQuery.isPlainObject( copy ) || - ( copyIsArray = Array.isArray( copy ) ) ) ) { - src = target[ name ]; - - // Ensure proper type for the source value - if ( copyIsArray && !Array.isArray( src ) ) { - clone = []; - } else if ( !copyIsArray && !jQuery.isPlainObject( src ) ) { - clone = {}; - } else { - clone = src; - } - copyIsArray = false; - - // Never move original objects, clone them - target[ name ] = jQuery.extend( deep, clone, copy ); - - // Don't bring in undefined values - } else if ( copy !== undefined ) { - target[ name ] = copy; - } - } - } - } - - // Return the modified object - return target; -}; - -jQuery.extend( { - - // Unique for each copy of jQuery on the page - expando: "jQuery" + ( version + Math.random() ).replace( /\D/g, "" ), - - // Assume jQuery is ready without the ready module - isReady: true, - - error: function( msg ) { - throw new Error( msg ); - }, - - noop: function() {}, - - isPlainObject: function( obj ) { - var proto, Ctor; - - // Detect obvious negatives - // Use toString instead of jQuery.type to catch host objects - if ( !obj || toString.call( obj ) !== "[object Object]" ) { - return false; - } - - proto = getProto( obj ); - - // Objects with no prototype (e.g., `Object.create( null )`) are plain - if ( !proto ) { - return true; - } - - // Objects with prototype are plain iff they were constructed by a global Object function - Ctor = hasOwn.call( proto, "constructor" ) && proto.constructor; - return typeof Ctor === "function" && fnToString.call( Ctor ) === ObjectFunctionString; - }, - - isEmptyObject: function( obj ) { - var name; - - for ( name in obj ) { - return false; - } - return true; - }, - - // Evaluates a script in a global context - globalEval: function( code, options ) { - DOMEval( code, { nonce: options && options.nonce } ); - }, - - each: function( obj, callback ) { - var length, i = 0; - - if ( isArrayLike( obj ) ) { - length = obj.length; - for ( ; i < length; i++ ) { - if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) { - break; - } - } - } else { - for ( i in obj ) { - if ( callback.call( obj[ i ], i, obj[ i ] ) === false ) { - break; - } - } - } - - return obj; - }, - - // Support: Android <=4.0 only - trim: function( text ) { - return text == null ? - "" : - ( text + "" ).replace( rtrim, "" ); - }, - - // results is for internal usage only - makeArray: function( arr, results ) { - var ret = results || []; - - if ( arr != null ) { - if ( isArrayLike( Object( arr ) ) ) { - jQuery.merge( ret, - typeof arr === "string" ? - [ arr ] : arr - ); - } else { - push.call( ret, arr ); - } - } - - return ret; - }, - - inArray: function( elem, arr, i ) { - return arr == null ? -1 : indexOf.call( arr, elem, i ); - }, - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - merge: function( first, second ) { - var len = +second.length, - j = 0, - i = first.length; - - for ( ; j < len; j++ ) { - first[ i++ ] = second[ j ]; - } - - first.length = i; - - return first; - }, - - grep: function( elems, callback, invert ) { - var callbackInverse, - matches = [], - i = 0, - length = elems.length, - callbackExpect = !invert; - - // Go through the array, only saving the items - // that pass the validator function - for ( ; i < length; i++ ) { - callbackInverse = !callback( elems[ i ], i ); - if ( callbackInverse !== callbackExpect ) { - matches.push( elems[ i ] ); - } - } - - return matches; - }, - - // arg is for internal usage only - map: function( elems, callback, arg ) { - var length, value, - i = 0, - ret = []; - - // Go through the array, translating each of the items to their new values - if ( isArrayLike( elems ) ) { - length = elems.length; - for ( ; i < length; i++ ) { - value = callback( elems[ i ], i, arg ); - - if ( value != null ) { - ret.push( value ); - } - } - - // Go through every key on the object, - } else { - for ( i in elems ) { - value = callback( elems[ i ], i, arg ); - - if ( value != null ) { - ret.push( value ); - } - } - } - - // Flatten any nested arrays - return concat.apply( [], ret ); - }, - - // A global GUID counter for objects - guid: 1, - - // jQuery.support is not used in Core but other projects attach their - // properties to it so it needs to exist. - support: support -} ); - -if ( typeof Symbol === "function" ) { - jQuery.fn[ Symbol.iterator ] = arr[ Symbol.iterator ]; -} - -// Populate the class2type map -jQuery.each( "Boolean Number String Function Array Date RegExp Object Error Symbol".split( " " ), -function( i, name ) { - class2type[ "[object " + name + "]" ] = name.toLowerCase(); -} ); - -function isArrayLike( obj ) { - - // Support: real iOS 8.2 only (not reproducible in simulator) - // `in` check used to prevent JIT error (gh-2145) - // hasOwn isn't used here due to false negatives - // regarding Nodelist length in IE - var length = !!obj && "length" in obj && obj.length, - type = toType( obj ); - - if ( isFunction( obj ) || isWindow( obj ) ) { - return false; - } - - return type === "array" || length === 0 || - typeof length === "number" && length > 0 && ( length - 1 ) in obj; -} -var Sizzle = -/*! - * Sizzle CSS Selector Engine v2.3.4 - * https://sizzlejs.com/ - * - * Copyright JS Foundation and other contributors - * Released under the MIT license - * https://js.foundation/ - * - * Date: 2019-04-08 - */ -(function( window ) { - -var i, - support, - Expr, - getText, - isXML, - tokenize, - compile, - select, - outermostContext, - sortInput, - hasDuplicate, - - // Local document vars - setDocument, - document, - docElem, - documentIsHTML, - rbuggyQSA, - rbuggyMatches, - matches, - contains, - - // Instance-specific data - expando = "sizzle" + 1 * new Date(), - preferredDoc = window.document, - dirruns = 0, - done = 0, - classCache = createCache(), - tokenCache = createCache(), - compilerCache = createCache(), - nonnativeSelectorCache = createCache(), - sortOrder = function( a, b ) { - if ( a === b ) { - hasDuplicate = true; - } - return 0; - }, - - // Instance methods - hasOwn = ({}).hasOwnProperty, - arr = [], - pop = arr.pop, - push_native = arr.push, - push = arr.push, - slice = arr.slice, - // Use a stripped-down indexOf as it's faster than native - // https://jsperf.com/thor-indexof-vs-for/5 - indexOf = function( list, elem ) { - var i = 0, - len = list.length; - for ( ; i < len; i++ ) { - if ( list[i] === elem ) { - return i; - } - } - return -1; - }, - - booleans = "checked|selected|async|autofocus|autoplay|controls|defer|disabled|hidden|ismap|loop|multiple|open|readonly|required|scoped", - - // Regular expressions - - // http://www.w3.org/TR/css3-selectors/#whitespace - whitespace = "[\\x20\\t\\r\\n\\f]", - - // http://www.w3.org/TR/CSS21/syndata.html#value-def-identifier - identifier = "(?:\\\\.|[\\w-]|[^\0-\\xa0])+", - - // Attribute selectors: http://www.w3.org/TR/selectors/#attribute-selectors - attributes = "\\[" + whitespace + "*(" + identifier + ")(?:" + whitespace + - // Operator (capture 2) - "*([*^$|!~]?=)" + whitespace + - // "Attribute values must be CSS identifiers [capture 5] or strings [capture 3 or capture 4]" - "*(?:'((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\"|(" + identifier + "))|)" + whitespace + - "*\\]", - - pseudos = ":(" + identifier + ")(?:\\((" + - // To reduce the number of selectors needing tokenize in the preFilter, prefer arguments: - // 1. quoted (capture 3; capture 4 or capture 5) - "('((?:\\\\.|[^\\\\'])*)'|\"((?:\\\\.|[^\\\\\"])*)\")|" + - // 2. simple (capture 6) - "((?:\\\\.|[^\\\\()[\\]]|" + attributes + ")*)|" + - // 3. anything else (capture 2) - ".*" + - ")\\)|)", - - // Leading and non-escaped trailing whitespace, capturing some non-whitespace characters preceding the latter - rwhitespace = new RegExp( whitespace + "+", "g" ), - rtrim = new RegExp( "^" + whitespace + "+|((?:^|[^\\\\])(?:\\\\.)*)" + whitespace + "+$", "g" ), - - rcomma = new RegExp( "^" + whitespace + "*," + whitespace + "*" ), - rcombinators = new RegExp( "^" + whitespace + "*([>+~]|" + whitespace + ")" + whitespace + "*" ), - rdescend = new RegExp( whitespace + "|>" ), - - rpseudo = new RegExp( pseudos ), - ridentifier = new RegExp( "^" + identifier + "$" ), - - matchExpr = { - "ID": new RegExp( "^#(" + identifier + ")" ), - "CLASS": new RegExp( "^\\.(" + identifier + ")" ), - "TAG": new RegExp( "^(" + identifier + "|[*])" ), - "ATTR": new RegExp( "^" + attributes ), - "PSEUDO": new RegExp( "^" + pseudos ), - "CHILD": new RegExp( "^:(only|first|last|nth|nth-last)-(child|of-type)(?:\\(" + whitespace + - "*(even|odd|(([+-]|)(\\d*)n|)" + whitespace + "*(?:([+-]|)" + whitespace + - "*(\\d+)|))" + whitespace + "*\\)|)", "i" ), - "bool": new RegExp( "^(?:" + booleans + ")$", "i" ), - // For use in libraries implementing .is() - // We use this for POS matching in `select` - "needsContext": new RegExp( "^" + whitespace + "*[>+~]|:(even|odd|eq|gt|lt|nth|first|last)(?:\\(" + - whitespace + "*((?:-\\d)?\\d*)" + whitespace + "*\\)|)(?=[^-]|$)", "i" ) - }, - - rhtml = /HTML$/i, - rinputs = /^(?:input|select|textarea|button)$/i, - rheader = /^h\d$/i, - - rnative = /^[^{]+\{\s*\[native \w/, - - // Easily-parseable/retrievable ID or TAG or CLASS selectors - rquickExpr = /^(?:#([\w-]+)|(\w+)|\.([\w-]+))$/, - - rsibling = /[+~]/, - - // CSS escapes - // http://www.w3.org/TR/CSS21/syndata.html#escaped-characters - runescape = new RegExp( "\\\\([\\da-f]{1,6}" + whitespace + "?|(" + whitespace + ")|.)", "ig" ), - funescape = function( _, escaped, escapedWhitespace ) { - var high = "0x" + escaped - 0x10000; - // NaN means non-codepoint - // Support: Firefox<24 - // Workaround erroneous numeric interpretation of +"0x" - return high !== high || escapedWhitespace ? - escaped : - high < 0 ? - // BMP codepoint - String.fromCharCode( high + 0x10000 ) : - // Supplemental Plane codepoint (surrogate pair) - String.fromCharCode( high >> 10 | 0xD800, high & 0x3FF | 0xDC00 ); - }, - - // CSS string/identifier serialization - // https://drafts.csswg.org/cssom/#common-serializing-idioms - rcssescape = /([\0-\x1f\x7f]|^-?\d)|^-$|[^\0-\x1f\x7f-\uFFFF\w-]/g, - fcssescape = function( ch, asCodePoint ) { - if ( asCodePoint ) { - - // U+0000 NULL becomes U+FFFD REPLACEMENT CHARACTER - if ( ch === "\0" ) { - return "\uFFFD"; - } - - // Control characters and (dependent upon position) numbers get escaped as code points - return ch.slice( 0, -1 ) + "\\" + ch.charCodeAt( ch.length - 1 ).toString( 16 ) + " "; - } - - // Other potentially-special ASCII characters get backslash-escaped - return "\\" + ch; - }, - - // Used for iframes - // See setDocument() - // Removing the function wrapper causes a "Permission Denied" - // error in IE - unloadHandler = function() { - setDocument(); - }, - - inDisabledFieldset = addCombinator( - function( elem ) { - return elem.disabled === true && elem.nodeName.toLowerCase() === "fieldset"; - }, - { dir: "parentNode", next: "legend" } - ); - -// Optimize for push.apply( _, NodeList ) -try { - push.apply( - (arr = slice.call( preferredDoc.childNodes )), - preferredDoc.childNodes - ); - // Support: Android<4.0 - // Detect silently failing push.apply - arr[ preferredDoc.childNodes.length ].nodeType; -} catch ( e ) { - push = { apply: arr.length ? - - // Leverage slice if possible - function( target, els ) { - push_native.apply( target, slice.call(els) ); - } : - - // Support: IE<9 - // Otherwise append directly - function( target, els ) { - var j = target.length, - i = 0; - // Can't trust NodeList.length - while ( (target[j++] = els[i++]) ) {} - target.length = j - 1; - } - }; -} - -function Sizzle( selector, context, results, seed ) { - var m, i, elem, nid, match, groups, newSelector, - newContext = context && context.ownerDocument, - - // nodeType defaults to 9, since context defaults to document - nodeType = context ? context.nodeType : 9; - - results = results || []; - - // Return early from calls with invalid selector or context - if ( typeof selector !== "string" || !selector || - nodeType !== 1 && nodeType !== 9 && nodeType !== 11 ) { - - return results; - } - - // Try to shortcut find operations (as opposed to filters) in HTML documents - if ( !seed ) { - - if ( ( context ? context.ownerDocument || context : preferredDoc ) !== document ) { - setDocument( context ); - } - context = context || document; - - if ( documentIsHTML ) { - - // If the selector is sufficiently simple, try using a "get*By*" DOM method - // (excepting DocumentFragment context, where the methods don't exist) - if ( nodeType !== 11 && (match = rquickExpr.exec( selector )) ) { - - // ID selector - if ( (m = match[1]) ) { - - // Document context - if ( nodeType === 9 ) { - if ( (elem = context.getElementById( m )) ) { - - // Support: IE, Opera, Webkit - // TODO: identify versions - // getElementById can match elements by name instead of ID - if ( elem.id === m ) { - results.push( elem ); - return results; - } - } else { - return results; - } - - // Element context - } else { - - // Support: IE, Opera, Webkit - // TODO: identify versions - // getElementById can match elements by name instead of ID - if ( newContext && (elem = newContext.getElementById( m )) && - contains( context, elem ) && - elem.id === m ) { - - results.push( elem ); - return results; - } - } - - // Type selector - } else if ( match[2] ) { - push.apply( results, context.getElementsByTagName( selector ) ); - return results; - - // Class selector - } else if ( (m = match[3]) && support.getElementsByClassName && - context.getElementsByClassName ) { - - push.apply( results, context.getElementsByClassName( m ) ); - return results; - } - } - - // Take advantage of querySelectorAll - if ( support.qsa && - !nonnativeSelectorCache[ selector + " " ] && - (!rbuggyQSA || !rbuggyQSA.test( selector )) && - - // Support: IE 8 only - // Exclude object elements - (nodeType !== 1 || context.nodeName.toLowerCase() !== "object") ) { - - newSelector = selector; - newContext = context; - - // qSA considers elements outside a scoping root when evaluating child or - // descendant combinators, which is not what we want. - // In such cases, we work around the behavior by prefixing every selector in the - // list with an ID selector referencing the scope context. - // Thanks to Andrew Dupont for this technique. - if ( nodeType === 1 && rdescend.test( selector ) ) { - - // Capture the context ID, setting it first if necessary - if ( (nid = context.getAttribute( "id" )) ) { - nid = nid.replace( rcssescape, fcssescape ); - } else { - context.setAttribute( "id", (nid = expando) ); - } - - // Prefix every selector in the list - groups = tokenize( selector ); - i = groups.length; - while ( i-- ) { - groups[i] = "#" + nid + " " + toSelector( groups[i] ); - } - newSelector = groups.join( "," ); - - // Expand context for sibling selectors - newContext = rsibling.test( selector ) && testContext( context.parentNode ) || - context; - } - - try { - push.apply( results, - newContext.querySelectorAll( newSelector ) - ); - return results; - } catch ( qsaError ) { - nonnativeSelectorCache( selector, true ); - } finally { - if ( nid === expando ) { - context.removeAttribute( "id" ); - } - } - } - } - } - - // All others - return select( selector.replace( rtrim, "$1" ), context, results, seed ); -} - -/** - * Create key-value caches of limited size - * @returns {function(string, object)} Returns the Object data after storing it on itself with - * property name the (space-suffixed) string and (if the cache is larger than Expr.cacheLength) - * deleting the oldest entry - */ -function createCache() { - var keys = []; - - function cache( key, value ) { - // Use (key + " ") to avoid collision with native prototype properties (see Issue #157) - if ( keys.push( key + " " ) > Expr.cacheLength ) { - // Only keep the most recent entries - delete cache[ keys.shift() ]; - } - return (cache[ key + " " ] = value); - } - return cache; -} - -/** - * Mark a function for special use by Sizzle - * @param {Function} fn The function to mark - */ -function markFunction( fn ) { - fn[ expando ] = true; - return fn; -} - -/** - * Support testing using an element - * @param {Function} fn Passed the created element and returns a boolean result - */ -function assert( fn ) { - var el = document.createElement("fieldset"); - - try { - return !!fn( el ); - } catch (e) { - return false; - } finally { - // Remove from its parent by default - if ( el.parentNode ) { - el.parentNode.removeChild( el ); - } - // release memory in IE - el = null; - } -} - -/** - * Adds the same handler for all of the specified attrs - * @param {String} attrs Pipe-separated list of attributes - * @param {Function} handler The method that will be applied - */ -function addHandle( attrs, handler ) { - var arr = attrs.split("|"), - i = arr.length; - - while ( i-- ) { - Expr.attrHandle[ arr[i] ] = handler; - } -} - -/** - * Checks document order of two siblings - * @param {Element} a - * @param {Element} b - * @returns {Number} Returns less than 0 if a precedes b, greater than 0 if a follows b - */ -function siblingCheck( a, b ) { - var cur = b && a, - diff = cur && a.nodeType === 1 && b.nodeType === 1 && - a.sourceIndex - b.sourceIndex; - - // Use IE sourceIndex if available on both nodes - if ( diff ) { - return diff; - } - - // Check if b follows a - if ( cur ) { - while ( (cur = cur.nextSibling) ) { - if ( cur === b ) { - return -1; - } - } - } - - return a ? 1 : -1; -} - -/** - * Returns a function to use in pseudos for input types - * @param {String} type - */ -function createInputPseudo( type ) { - return function( elem ) { - var name = elem.nodeName.toLowerCase(); - return name === "input" && elem.type === type; - }; -} - -/** - * Returns a function to use in pseudos for buttons - * @param {String} type - */ -function createButtonPseudo( type ) { - return function( elem ) { - var name = elem.nodeName.toLowerCase(); - return (name === "input" || name === "button") && elem.type === type; - }; -} - -/** - * Returns a function to use in pseudos for :enabled/:disabled - * @param {Boolean} disabled true for :disabled; false for :enabled - */ -function createDisabledPseudo( disabled ) { - - // Known :disabled false positives: fieldset[disabled] > legend:nth-of-type(n+2) :can-disable - return function( elem ) { - - // Only certain elements can match :enabled or :disabled - // https://html.spec.whatwg.org/multipage/scripting.html#selector-enabled - // https://html.spec.whatwg.org/multipage/scripting.html#selector-disabled - if ( "form" in elem ) { - - // Check for inherited disabledness on relevant non-disabled elements: - // * listed form-associated elements in a disabled fieldset - // https://html.spec.whatwg.org/multipage/forms.html#category-listed - // https://html.spec.whatwg.org/multipage/forms.html#concept-fe-disabled - // * option elements in a disabled optgroup - // https://html.spec.whatwg.org/multipage/forms.html#concept-option-disabled - // All such elements have a "form" property. - if ( elem.parentNode && elem.disabled === false ) { - - // Option elements defer to a parent optgroup if present - if ( "label" in elem ) { - if ( "label" in elem.parentNode ) { - return elem.parentNode.disabled === disabled; - } else { - return elem.disabled === disabled; - } - } - - // Support: IE 6 - 11 - // Use the isDisabled shortcut property to check for disabled fieldset ancestors - return elem.isDisabled === disabled || - - // Where there is no isDisabled, check manually - /* jshint -W018 */ - elem.isDisabled !== !disabled && - inDisabledFieldset( elem ) === disabled; - } - - return elem.disabled === disabled; - - // Try to winnow out elements that can't be disabled before trusting the disabled property. - // Some victims get caught in our net (label, legend, menu, track), but it shouldn't - // even exist on them, let alone have a boolean value. - } else if ( "label" in elem ) { - return elem.disabled === disabled; - } - - // Remaining elements are neither :enabled nor :disabled - return false; - }; -} - -/** - * Returns a function to use in pseudos for positionals - * @param {Function} fn - */ -function createPositionalPseudo( fn ) { - return markFunction(function( argument ) { - argument = +argument; - return markFunction(function( seed, matches ) { - var j, - matchIndexes = fn( [], seed.length, argument ), - i = matchIndexes.length; - - // Match elements found at the specified indexes - while ( i-- ) { - if ( seed[ (j = matchIndexes[i]) ] ) { - seed[j] = !(matches[j] = seed[j]); - } - } - }); - }); -} - -/** - * Checks a node for validity as a Sizzle context - * @param {Element|Object=} context - * @returns {Element|Object|Boolean} The input node if acceptable, otherwise a falsy value - */ -function testContext( context ) { - return context && typeof context.getElementsByTagName !== "undefined" && context; -} - -// Expose support vars for convenience -support = Sizzle.support = {}; - -/** - * Detects XML nodes - * @param {Element|Object} elem An element or a document - * @returns {Boolean} True iff elem is a non-HTML XML node - */ -isXML = Sizzle.isXML = function( elem ) { - var namespace = elem.namespaceURI, - docElem = (elem.ownerDocument || elem).documentElement; - - // Support: IE <=8 - // Assume HTML when documentElement doesn't yet exist, such as inside loading iframes - // https://bugs.jquery.com/ticket/4833 - return !rhtml.test( namespace || docElem && docElem.nodeName || "HTML" ); -}; - -/** - * Sets document-related variables once based on the current document - * @param {Element|Object} [doc] An element or document object to use to set the document - * @returns {Object} Returns the current document - */ -setDocument = Sizzle.setDocument = function( node ) { - var hasCompare, subWindow, - doc = node ? node.ownerDocument || node : preferredDoc; - - // Return early if doc is invalid or already selected - if ( doc === document || doc.nodeType !== 9 || !doc.documentElement ) { - return document; - } - - // Update global variables - document = doc; - docElem = document.documentElement; - documentIsHTML = !isXML( document ); - - // Support: IE 9-11, Edge - // Accessing iframe documents after unload throws "permission denied" errors (jQuery #13936) - if ( preferredDoc !== document && - (subWindow = document.defaultView) && subWindow.top !== subWindow ) { - - // Support: IE 11, Edge - if ( subWindow.addEventListener ) { - subWindow.addEventListener( "unload", unloadHandler, false ); - - // Support: IE 9 - 10 only - } else if ( subWindow.attachEvent ) { - subWindow.attachEvent( "onunload", unloadHandler ); - } - } - - /* Attributes - ---------------------------------------------------------------------- */ - - // Support: IE<8 - // Verify that getAttribute really returns attributes and not properties - // (excepting IE8 booleans) - support.attributes = assert(function( el ) { - el.className = "i"; - return !el.getAttribute("className"); - }); - - /* getElement(s)By* - ---------------------------------------------------------------------- */ - - // Check if getElementsByTagName("*") returns only elements - support.getElementsByTagName = assert(function( el ) { - el.appendChild( document.createComment("") ); - return !el.getElementsByTagName("*").length; - }); - - // Support: IE<9 - support.getElementsByClassName = rnative.test( document.getElementsByClassName ); - - // Support: IE<10 - // Check if getElementById returns elements by name - // The broken getElementById methods don't pick up programmatically-set names, - // so use a roundabout getElementsByName test - support.getById = assert(function( el ) { - docElem.appendChild( el ).id = expando; - return !document.getElementsByName || !document.getElementsByName( expando ).length; - }); - - // ID filter and find - if ( support.getById ) { - Expr.filter["ID"] = function( id ) { - var attrId = id.replace( runescape, funescape ); - return function( elem ) { - return elem.getAttribute("id") === attrId; - }; - }; - Expr.find["ID"] = function( id, context ) { - if ( typeof context.getElementById !== "undefined" && documentIsHTML ) { - var elem = context.getElementById( id ); - return elem ? [ elem ] : []; - } - }; - } else { - Expr.filter["ID"] = function( id ) { - var attrId = id.replace( runescape, funescape ); - return function( elem ) { - var node = typeof elem.getAttributeNode !== "undefined" && - elem.getAttributeNode("id"); - return node && node.value === attrId; - }; - }; - - // Support: IE 6 - 7 only - // getElementById is not reliable as a find shortcut - Expr.find["ID"] = function( id, context ) { - if ( typeof context.getElementById !== "undefined" && documentIsHTML ) { - var node, i, elems, - elem = context.getElementById( id ); - - if ( elem ) { - - // Verify the id attribute - node = elem.getAttributeNode("id"); - if ( node && node.value === id ) { - return [ elem ]; - } - - // Fall back on getElementsByName - elems = context.getElementsByName( id ); - i = 0; - while ( (elem = elems[i++]) ) { - node = elem.getAttributeNode("id"); - if ( node && node.value === id ) { - return [ elem ]; - } - } - } - - return []; - } - }; - } - - // Tag - Expr.find["TAG"] = support.getElementsByTagName ? - function( tag, context ) { - if ( typeof context.getElementsByTagName !== "undefined" ) { - return context.getElementsByTagName( tag ); - - // DocumentFragment nodes don't have gEBTN - } else if ( support.qsa ) { - return context.querySelectorAll( tag ); - } - } : - - function( tag, context ) { - var elem, - tmp = [], - i = 0, - // By happy coincidence, a (broken) gEBTN appears on DocumentFragment nodes too - results = context.getElementsByTagName( tag ); - - // Filter out possible comments - if ( tag === "*" ) { - while ( (elem = results[i++]) ) { - if ( elem.nodeType === 1 ) { - tmp.push( elem ); - } - } - - return tmp; - } - return results; - }; - - // Class - Expr.find["CLASS"] = support.getElementsByClassName && function( className, context ) { - if ( typeof context.getElementsByClassName !== "undefined" && documentIsHTML ) { - return context.getElementsByClassName( className ); - } - }; - - /* QSA/matchesSelector - ---------------------------------------------------------------------- */ - - // QSA and matchesSelector support - - // matchesSelector(:active) reports false when true (IE9/Opera 11.5) - rbuggyMatches = []; - - // qSa(:focus) reports false when true (Chrome 21) - // We allow this because of a bug in IE8/9 that throws an error - // whenever `document.activeElement` is accessed on an iframe - // So, we allow :focus to pass through QSA all the time to avoid the IE error - // See https://bugs.jquery.com/ticket/13378 - rbuggyQSA = []; - - if ( (support.qsa = rnative.test( document.querySelectorAll )) ) { - // Build QSA regex - // Regex strategy adopted from Diego Perini - assert(function( el ) { - // Select is set to empty string on purpose - // This is to test IE's treatment of not explicitly - // setting a boolean content attribute, - // since its presence should be enough - // https://bugs.jquery.com/ticket/12359 - docElem.appendChild( el ).innerHTML = "" + - ""; - - // Support: IE8, Opera 11-12.16 - // Nothing should be selected when empty strings follow ^= or $= or *= - // The test attribute must be unknown in Opera but "safe" for WinRT - // https://msdn.microsoft.com/en-us/library/ie/hh465388.aspx#attribute_section - if ( el.querySelectorAll("[msallowcapture^='']").length ) { - rbuggyQSA.push( "[*^$]=" + whitespace + "*(?:''|\"\")" ); - } - - // Support: IE8 - // Boolean attributes and "value" are not treated correctly - if ( !el.querySelectorAll("[selected]").length ) { - rbuggyQSA.push( "\\[" + whitespace + "*(?:value|" + booleans + ")" ); - } - - // Support: Chrome<29, Android<4.4, Safari<7.0+, iOS<7.0+, PhantomJS<1.9.8+ - if ( !el.querySelectorAll( "[id~=" + expando + "-]" ).length ) { - rbuggyQSA.push("~="); - } - - // Webkit/Opera - :checked should return selected option elements - // http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked - // IE8 throws error here and will not see later tests - if ( !el.querySelectorAll(":checked").length ) { - rbuggyQSA.push(":checked"); - } - - // Support: Safari 8+, iOS 8+ - // https://bugs.webkit.org/show_bug.cgi?id=136851 - // In-page `selector#id sibling-combinator selector` fails - if ( !el.querySelectorAll( "a#" + expando + "+*" ).length ) { - rbuggyQSA.push(".#.+[+~]"); - } - }); - - assert(function( el ) { - el.innerHTML = "" + - ""; - - // Support: Windows 8 Native Apps - // The type and name attributes are restricted during .innerHTML assignment - var input = document.createElement("input"); - input.setAttribute( "type", "hidden" ); - el.appendChild( input ).setAttribute( "name", "D" ); - - // Support: IE8 - // Enforce case-sensitivity of name attribute - if ( el.querySelectorAll("[name=d]").length ) { - rbuggyQSA.push( "name" + whitespace + "*[*^$|!~]?=" ); - } - - // FF 3.5 - :enabled/:disabled and hidden elements (hidden elements are still enabled) - // IE8 throws error here and will not see later tests - if ( el.querySelectorAll(":enabled").length !== 2 ) { - rbuggyQSA.push( ":enabled", ":disabled" ); - } - - // Support: IE9-11+ - // IE's :disabled selector does not pick up the children of disabled fieldsets - docElem.appendChild( el ).disabled = true; - if ( el.querySelectorAll(":disabled").length !== 2 ) { - rbuggyQSA.push( ":enabled", ":disabled" ); - } - - // Opera 10-11 does not throw on post-comma invalid pseudos - el.querySelectorAll("*,:x"); - rbuggyQSA.push(",.*:"); - }); - } - - if ( (support.matchesSelector = rnative.test( (matches = docElem.matches || - docElem.webkitMatchesSelector || - docElem.mozMatchesSelector || - docElem.oMatchesSelector || - docElem.msMatchesSelector) )) ) { - - assert(function( el ) { - // Check to see if it's possible to do matchesSelector - // on a disconnected node (IE 9) - support.disconnectedMatch = matches.call( el, "*" ); - - // This should fail with an exception - // Gecko does not error, returns false instead - matches.call( el, "[s!='']:x" ); - rbuggyMatches.push( "!=", pseudos ); - }); - } - - rbuggyQSA = rbuggyQSA.length && new RegExp( rbuggyQSA.join("|") ); - rbuggyMatches = rbuggyMatches.length && new RegExp( rbuggyMatches.join("|") ); - - /* Contains - ---------------------------------------------------------------------- */ - hasCompare = rnative.test( docElem.compareDocumentPosition ); - - // Element contains another - // Purposefully self-exclusive - // As in, an element does not contain itself - contains = hasCompare || rnative.test( docElem.contains ) ? - function( a, b ) { - var adown = a.nodeType === 9 ? a.documentElement : a, - bup = b && b.parentNode; - return a === bup || !!( bup && bup.nodeType === 1 && ( - adown.contains ? - adown.contains( bup ) : - a.compareDocumentPosition && a.compareDocumentPosition( bup ) & 16 - )); - } : - function( a, b ) { - if ( b ) { - while ( (b = b.parentNode) ) { - if ( b === a ) { - return true; - } - } - } - return false; - }; - - /* Sorting - ---------------------------------------------------------------------- */ - - // Document order sorting - sortOrder = hasCompare ? - function( a, b ) { - - // Flag for duplicate removal - if ( a === b ) { - hasDuplicate = true; - return 0; - } - - // Sort on method existence if only one input has compareDocumentPosition - var compare = !a.compareDocumentPosition - !b.compareDocumentPosition; - if ( compare ) { - return compare; - } - - // Calculate position if both inputs belong to the same document - compare = ( a.ownerDocument || a ) === ( b.ownerDocument || b ) ? - a.compareDocumentPosition( b ) : - - // Otherwise we know they are disconnected - 1; - - // Disconnected nodes - if ( compare & 1 || - (!support.sortDetached && b.compareDocumentPosition( a ) === compare) ) { - - // Choose the first element that is related to our preferred document - if ( a === document || a.ownerDocument === preferredDoc && contains(preferredDoc, a) ) { - return -1; - } - if ( b === document || b.ownerDocument === preferredDoc && contains(preferredDoc, b) ) { - return 1; - } - - // Maintain original order - return sortInput ? - ( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) : - 0; - } - - return compare & 4 ? -1 : 1; - } : - function( a, b ) { - // Exit early if the nodes are identical - if ( a === b ) { - hasDuplicate = true; - return 0; - } - - var cur, - i = 0, - aup = a.parentNode, - bup = b.parentNode, - ap = [ a ], - bp = [ b ]; - - // Parentless nodes are either documents or disconnected - if ( !aup || !bup ) { - return a === document ? -1 : - b === document ? 1 : - aup ? -1 : - bup ? 1 : - sortInput ? - ( indexOf( sortInput, a ) - indexOf( sortInput, b ) ) : - 0; - - // If the nodes are siblings, we can do a quick check - } else if ( aup === bup ) { - return siblingCheck( a, b ); - } - - // Otherwise we need full lists of their ancestors for comparison - cur = a; - while ( (cur = cur.parentNode) ) { - ap.unshift( cur ); - } - cur = b; - while ( (cur = cur.parentNode) ) { - bp.unshift( cur ); - } - - // Walk down the tree looking for a discrepancy - while ( ap[i] === bp[i] ) { - i++; - } - - return i ? - // Do a sibling check if the nodes have a common ancestor - siblingCheck( ap[i], bp[i] ) : - - // Otherwise nodes in our document sort first - ap[i] === preferredDoc ? -1 : - bp[i] === preferredDoc ? 1 : - 0; - }; - - return document; -}; - -Sizzle.matches = function( expr, elements ) { - return Sizzle( expr, null, null, elements ); -}; - -Sizzle.matchesSelector = function( elem, expr ) { - // Set document vars if needed - if ( ( elem.ownerDocument || elem ) !== document ) { - setDocument( elem ); - } - - if ( support.matchesSelector && documentIsHTML && - !nonnativeSelectorCache[ expr + " " ] && - ( !rbuggyMatches || !rbuggyMatches.test( expr ) ) && - ( !rbuggyQSA || !rbuggyQSA.test( expr ) ) ) { - - try { - var ret = matches.call( elem, expr ); - - // IE 9's matchesSelector returns false on disconnected nodes - if ( ret || support.disconnectedMatch || - // As well, disconnected nodes are said to be in a document - // fragment in IE 9 - elem.document && elem.document.nodeType !== 11 ) { - return ret; - } - } catch (e) { - nonnativeSelectorCache( expr, true ); - } - } - - return Sizzle( expr, document, null, [ elem ] ).length > 0; -}; - -Sizzle.contains = function( context, elem ) { - // Set document vars if needed - if ( ( context.ownerDocument || context ) !== document ) { - setDocument( context ); - } - return contains( context, elem ); -}; - -Sizzle.attr = function( elem, name ) { - // Set document vars if needed - if ( ( elem.ownerDocument || elem ) !== document ) { - setDocument( elem ); - } - - var fn = Expr.attrHandle[ name.toLowerCase() ], - // Don't get fooled by Object.prototype properties (jQuery #13807) - val = fn && hasOwn.call( Expr.attrHandle, name.toLowerCase() ) ? - fn( elem, name, !documentIsHTML ) : - undefined; - - return val !== undefined ? - val : - support.attributes || !documentIsHTML ? - elem.getAttribute( name ) : - (val = elem.getAttributeNode(name)) && val.specified ? - val.value : - null; -}; - -Sizzle.escape = function( sel ) { - return (sel + "").replace( rcssescape, fcssescape ); -}; - -Sizzle.error = function( msg ) { - throw new Error( "Syntax error, unrecognized expression: " + msg ); -}; - -/** - * Document sorting and removing duplicates - * @param {ArrayLike} results - */ -Sizzle.uniqueSort = function( results ) { - var elem, - duplicates = [], - j = 0, - i = 0; - - // Unless we *know* we can detect duplicates, assume their presence - hasDuplicate = !support.detectDuplicates; - sortInput = !support.sortStable && results.slice( 0 ); - results.sort( sortOrder ); - - if ( hasDuplicate ) { - while ( (elem = results[i++]) ) { - if ( elem === results[ i ] ) { - j = duplicates.push( i ); - } - } - while ( j-- ) { - results.splice( duplicates[ j ], 1 ); - } - } - - // Clear input after sorting to release objects - // See https://github.com/jquery/sizzle/pull/225 - sortInput = null; - - return results; -}; - -/** - * Utility function for retrieving the text value of an array of DOM nodes - * @param {Array|Element} elem - */ -getText = Sizzle.getText = function( elem ) { - var node, - ret = "", - i = 0, - nodeType = elem.nodeType; - - if ( !nodeType ) { - // If no nodeType, this is expected to be an array - while ( (node = elem[i++]) ) { - // Do not traverse comment nodes - ret += getText( node ); - } - } else if ( nodeType === 1 || nodeType === 9 || nodeType === 11 ) { - // Use textContent for elements - // innerText usage removed for consistency of new lines (jQuery #11153) - if ( typeof elem.textContent === "string" ) { - return elem.textContent; - } else { - // Traverse its children - for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) { - ret += getText( elem ); - } - } - } else if ( nodeType === 3 || nodeType === 4 ) { - return elem.nodeValue; - } - // Do not include comment or processing instruction nodes - - return ret; -}; - -Expr = Sizzle.selectors = { - - // Can be adjusted by the user - cacheLength: 50, - - createPseudo: markFunction, - - match: matchExpr, - - attrHandle: {}, - - find: {}, - - relative: { - ">": { dir: "parentNode", first: true }, - " ": { dir: "parentNode" }, - "+": { dir: "previousSibling", first: true }, - "~": { dir: "previousSibling" } - }, - - preFilter: { - "ATTR": function( match ) { - match[1] = match[1].replace( runescape, funescape ); - - // Move the given value to match[3] whether quoted or unquoted - match[3] = ( match[3] || match[4] || match[5] || "" ).replace( runescape, funescape ); - - if ( match[2] === "~=" ) { - match[3] = " " + match[3] + " "; - } - - return match.slice( 0, 4 ); - }, - - "CHILD": function( match ) { - /* matches from matchExpr["CHILD"] - 1 type (only|nth|...) - 2 what (child|of-type) - 3 argument (even|odd|\d*|\d*n([+-]\d+)?|...) - 4 xn-component of xn+y argument ([+-]?\d*n|) - 5 sign of xn-component - 6 x of xn-component - 7 sign of y-component - 8 y of y-component - */ - match[1] = match[1].toLowerCase(); - - if ( match[1].slice( 0, 3 ) === "nth" ) { - // nth-* requires argument - if ( !match[3] ) { - Sizzle.error( match[0] ); - } - - // numeric x and y parameters for Expr.filter.CHILD - // remember that false/true cast respectively to 0/1 - match[4] = +( match[4] ? match[5] + (match[6] || 1) : 2 * ( match[3] === "even" || match[3] === "odd" ) ); - match[5] = +( ( match[7] + match[8] ) || match[3] === "odd" ); - - // other types prohibit arguments - } else if ( match[3] ) { - Sizzle.error( match[0] ); - } - - return match; - }, - - "PSEUDO": function( match ) { - var excess, - unquoted = !match[6] && match[2]; - - if ( matchExpr["CHILD"].test( match[0] ) ) { - return null; - } - - // Accept quoted arguments as-is - if ( match[3] ) { - match[2] = match[4] || match[5] || ""; - - // Strip excess characters from unquoted arguments - } else if ( unquoted && rpseudo.test( unquoted ) && - // Get excess from tokenize (recursively) - (excess = tokenize( unquoted, true )) && - // advance to the next closing parenthesis - (excess = unquoted.indexOf( ")", unquoted.length - excess ) - unquoted.length) ) { - - // excess is a negative index - match[0] = match[0].slice( 0, excess ); - match[2] = unquoted.slice( 0, excess ); - } - - // Return only captures needed by the pseudo filter method (type and argument) - return match.slice( 0, 3 ); - } - }, - - filter: { - - "TAG": function( nodeNameSelector ) { - var nodeName = nodeNameSelector.replace( runescape, funescape ).toLowerCase(); - return nodeNameSelector === "*" ? - function() { return true; } : - function( elem ) { - return elem.nodeName && elem.nodeName.toLowerCase() === nodeName; - }; - }, - - "CLASS": function( className ) { - var pattern = classCache[ className + " " ]; - - return pattern || - (pattern = new RegExp( "(^|" + whitespace + ")" + className + "(" + whitespace + "|$)" )) && - classCache( className, function( elem ) { - return pattern.test( typeof elem.className === "string" && elem.className || typeof elem.getAttribute !== "undefined" && elem.getAttribute("class") || "" ); - }); - }, - - "ATTR": function( name, operator, check ) { - return function( elem ) { - var result = Sizzle.attr( elem, name ); - - if ( result == null ) { - return operator === "!="; - } - if ( !operator ) { - return true; - } - - result += ""; - - return operator === "=" ? result === check : - operator === "!=" ? result !== check : - operator === "^=" ? check && result.indexOf( check ) === 0 : - operator === "*=" ? check && result.indexOf( check ) > -1 : - operator === "$=" ? check && result.slice( -check.length ) === check : - operator === "~=" ? ( " " + result.replace( rwhitespace, " " ) + " " ).indexOf( check ) > -1 : - operator === "|=" ? result === check || result.slice( 0, check.length + 1 ) === check + "-" : - false; - }; - }, - - "CHILD": function( type, what, argument, first, last ) { - var simple = type.slice( 0, 3 ) !== "nth", - forward = type.slice( -4 ) !== "last", - ofType = what === "of-type"; - - return first === 1 && last === 0 ? - - // Shortcut for :nth-*(n) - function( elem ) { - return !!elem.parentNode; - } : - - function( elem, context, xml ) { - var cache, uniqueCache, outerCache, node, nodeIndex, start, - dir = simple !== forward ? "nextSibling" : "previousSibling", - parent = elem.parentNode, - name = ofType && elem.nodeName.toLowerCase(), - useCache = !xml && !ofType, - diff = false; - - if ( parent ) { - - // :(first|last|only)-(child|of-type) - if ( simple ) { - while ( dir ) { - node = elem; - while ( (node = node[ dir ]) ) { - if ( ofType ? - node.nodeName.toLowerCase() === name : - node.nodeType === 1 ) { - - return false; - } - } - // Reverse direction for :only-* (if we haven't yet done so) - start = dir = type === "only" && !start && "nextSibling"; - } - return true; - } - - start = [ forward ? parent.firstChild : parent.lastChild ]; - - // non-xml :nth-child(...) stores cache data on `parent` - if ( forward && useCache ) { - - // Seek `elem` from a previously-cached index - - // ...in a gzip-friendly way - node = parent; - outerCache = node[ expando ] || (node[ expando ] = {}); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ node.uniqueID ] || - (outerCache[ node.uniqueID ] = {}); - - cache = uniqueCache[ type ] || []; - nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ]; - diff = nodeIndex && cache[ 2 ]; - node = nodeIndex && parent.childNodes[ nodeIndex ]; - - while ( (node = ++nodeIndex && node && node[ dir ] || - - // Fallback to seeking `elem` from the start - (diff = nodeIndex = 0) || start.pop()) ) { - - // When found, cache indexes on `parent` and break - if ( node.nodeType === 1 && ++diff && node === elem ) { - uniqueCache[ type ] = [ dirruns, nodeIndex, diff ]; - break; - } - } - - } else { - // Use previously-cached element index if available - if ( useCache ) { - // ...in a gzip-friendly way - node = elem; - outerCache = node[ expando ] || (node[ expando ] = {}); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ node.uniqueID ] || - (outerCache[ node.uniqueID ] = {}); - - cache = uniqueCache[ type ] || []; - nodeIndex = cache[ 0 ] === dirruns && cache[ 1 ]; - diff = nodeIndex; - } - - // xml :nth-child(...) - // or :nth-last-child(...) or :nth(-last)?-of-type(...) - if ( diff === false ) { - // Use the same loop as above to seek `elem` from the start - while ( (node = ++nodeIndex && node && node[ dir ] || - (diff = nodeIndex = 0) || start.pop()) ) { - - if ( ( ofType ? - node.nodeName.toLowerCase() === name : - node.nodeType === 1 ) && - ++diff ) { - - // Cache the index of each encountered element - if ( useCache ) { - outerCache = node[ expando ] || (node[ expando ] = {}); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ node.uniqueID ] || - (outerCache[ node.uniqueID ] = {}); - - uniqueCache[ type ] = [ dirruns, diff ]; - } - - if ( node === elem ) { - break; - } - } - } - } - } - - // Incorporate the offset, then check against cycle size - diff -= last; - return diff === first || ( diff % first === 0 && diff / first >= 0 ); - } - }; - }, - - "PSEUDO": function( pseudo, argument ) { - // pseudo-class names are case-insensitive - // http://www.w3.org/TR/selectors/#pseudo-classes - // Prioritize by case sensitivity in case custom pseudos are added with uppercase letters - // Remember that setFilters inherits from pseudos - var args, - fn = Expr.pseudos[ pseudo ] || Expr.setFilters[ pseudo.toLowerCase() ] || - Sizzle.error( "unsupported pseudo: " + pseudo ); - - // The user may use createPseudo to indicate that - // arguments are needed to create the filter function - // just as Sizzle does - if ( fn[ expando ] ) { - return fn( argument ); - } - - // But maintain support for old signatures - if ( fn.length > 1 ) { - args = [ pseudo, pseudo, "", argument ]; - return Expr.setFilters.hasOwnProperty( pseudo.toLowerCase() ) ? - markFunction(function( seed, matches ) { - var idx, - matched = fn( seed, argument ), - i = matched.length; - while ( i-- ) { - idx = indexOf( seed, matched[i] ); - seed[ idx ] = !( matches[ idx ] = matched[i] ); - } - }) : - function( elem ) { - return fn( elem, 0, args ); - }; - } - - return fn; - } - }, - - pseudos: { - // Potentially complex pseudos - "not": markFunction(function( selector ) { - // Trim the selector passed to compile - // to avoid treating leading and trailing - // spaces as combinators - var input = [], - results = [], - matcher = compile( selector.replace( rtrim, "$1" ) ); - - return matcher[ expando ] ? - markFunction(function( seed, matches, context, xml ) { - var elem, - unmatched = matcher( seed, null, xml, [] ), - i = seed.length; - - // Match elements unmatched by `matcher` - while ( i-- ) { - if ( (elem = unmatched[i]) ) { - seed[i] = !(matches[i] = elem); - } - } - }) : - function( elem, context, xml ) { - input[0] = elem; - matcher( input, null, xml, results ); - // Don't keep the element (issue #299) - input[0] = null; - return !results.pop(); - }; - }), - - "has": markFunction(function( selector ) { - return function( elem ) { - return Sizzle( selector, elem ).length > 0; - }; - }), - - "contains": markFunction(function( text ) { - text = text.replace( runescape, funescape ); - return function( elem ) { - return ( elem.textContent || getText( elem ) ).indexOf( text ) > -1; - }; - }), - - // "Whether an element is represented by a :lang() selector - // is based solely on the element's language value - // being equal to the identifier C, - // or beginning with the identifier C immediately followed by "-". - // The matching of C against the element's language value is performed case-insensitively. - // The identifier C does not have to be a valid language name." - // http://www.w3.org/TR/selectors/#lang-pseudo - "lang": markFunction( function( lang ) { - // lang value must be a valid identifier - if ( !ridentifier.test(lang || "") ) { - Sizzle.error( "unsupported lang: " + lang ); - } - lang = lang.replace( runescape, funescape ).toLowerCase(); - return function( elem ) { - var elemLang; - do { - if ( (elemLang = documentIsHTML ? - elem.lang : - elem.getAttribute("xml:lang") || elem.getAttribute("lang")) ) { - - elemLang = elemLang.toLowerCase(); - return elemLang === lang || elemLang.indexOf( lang + "-" ) === 0; - } - } while ( (elem = elem.parentNode) && elem.nodeType === 1 ); - return false; - }; - }), - - // Miscellaneous - "target": function( elem ) { - var hash = window.location && window.location.hash; - return hash && hash.slice( 1 ) === elem.id; - }, - - "root": function( elem ) { - return elem === docElem; - }, - - "focus": function( elem ) { - return elem === document.activeElement && (!document.hasFocus || document.hasFocus()) && !!(elem.type || elem.href || ~elem.tabIndex); - }, - - // Boolean properties - "enabled": createDisabledPseudo( false ), - "disabled": createDisabledPseudo( true ), - - "checked": function( elem ) { - // In CSS3, :checked should return both checked and selected elements - // http://www.w3.org/TR/2011/REC-css3-selectors-20110929/#checked - var nodeName = elem.nodeName.toLowerCase(); - return (nodeName === "input" && !!elem.checked) || (nodeName === "option" && !!elem.selected); - }, - - "selected": function( elem ) { - // Accessing this property makes selected-by-default - // options in Safari work properly - if ( elem.parentNode ) { - elem.parentNode.selectedIndex; - } - - return elem.selected === true; - }, - - // Contents - "empty": function( elem ) { - // http://www.w3.org/TR/selectors/#empty-pseudo - // :empty is negated by element (1) or content nodes (text: 3; cdata: 4; entity ref: 5), - // but not by others (comment: 8; processing instruction: 7; etc.) - // nodeType < 6 works because attributes (2) do not appear as children - for ( elem = elem.firstChild; elem; elem = elem.nextSibling ) { - if ( elem.nodeType < 6 ) { - return false; - } - } - return true; - }, - - "parent": function( elem ) { - return !Expr.pseudos["empty"]( elem ); - }, - - // Element/input types - "header": function( elem ) { - return rheader.test( elem.nodeName ); - }, - - "input": function( elem ) { - return rinputs.test( elem.nodeName ); - }, - - "button": function( elem ) { - var name = elem.nodeName.toLowerCase(); - return name === "input" && elem.type === "button" || name === "button"; - }, - - "text": function( elem ) { - var attr; - return elem.nodeName.toLowerCase() === "input" && - elem.type === "text" && - - // Support: IE<8 - // New HTML5 attribute values (e.g., "search") appear with elem.type === "text" - ( (attr = elem.getAttribute("type")) == null || attr.toLowerCase() === "text" ); - }, - - // Position-in-collection - "first": createPositionalPseudo(function() { - return [ 0 ]; - }), - - "last": createPositionalPseudo(function( matchIndexes, length ) { - return [ length - 1 ]; - }), - - "eq": createPositionalPseudo(function( matchIndexes, length, argument ) { - return [ argument < 0 ? argument + length : argument ]; - }), - - "even": createPositionalPseudo(function( matchIndexes, length ) { - var i = 0; - for ( ; i < length; i += 2 ) { - matchIndexes.push( i ); - } - return matchIndexes; - }), - - "odd": createPositionalPseudo(function( matchIndexes, length ) { - var i = 1; - for ( ; i < length; i += 2 ) { - matchIndexes.push( i ); - } - return matchIndexes; - }), - - "lt": createPositionalPseudo(function( matchIndexes, length, argument ) { - var i = argument < 0 ? - argument + length : - argument > length ? - length : - argument; - for ( ; --i >= 0; ) { - matchIndexes.push( i ); - } - return matchIndexes; - }), - - "gt": createPositionalPseudo(function( matchIndexes, length, argument ) { - var i = argument < 0 ? argument + length : argument; - for ( ; ++i < length; ) { - matchIndexes.push( i ); - } - return matchIndexes; - }) - } -}; - -Expr.pseudos["nth"] = Expr.pseudos["eq"]; - -// Add button/input type pseudos -for ( i in { radio: true, checkbox: true, file: true, password: true, image: true } ) { - Expr.pseudos[ i ] = createInputPseudo( i ); -} -for ( i in { submit: true, reset: true } ) { - Expr.pseudos[ i ] = createButtonPseudo( i ); -} - -// Easy API for creating new setFilters -function setFilters() {} -setFilters.prototype = Expr.filters = Expr.pseudos; -Expr.setFilters = new setFilters(); - -tokenize = Sizzle.tokenize = function( selector, parseOnly ) { - var matched, match, tokens, type, - soFar, groups, preFilters, - cached = tokenCache[ selector + " " ]; - - if ( cached ) { - return parseOnly ? 0 : cached.slice( 0 ); - } - - soFar = selector; - groups = []; - preFilters = Expr.preFilter; - - while ( soFar ) { - - // Comma and first run - if ( !matched || (match = rcomma.exec( soFar )) ) { - if ( match ) { - // Don't consume trailing commas as valid - soFar = soFar.slice( match[0].length ) || soFar; - } - groups.push( (tokens = []) ); - } - - matched = false; - - // Combinators - if ( (match = rcombinators.exec( soFar )) ) { - matched = match.shift(); - tokens.push({ - value: matched, - // Cast descendant combinators to space - type: match[0].replace( rtrim, " " ) - }); - soFar = soFar.slice( matched.length ); - } - - // Filters - for ( type in Expr.filter ) { - if ( (match = matchExpr[ type ].exec( soFar )) && (!preFilters[ type ] || - (match = preFilters[ type ]( match ))) ) { - matched = match.shift(); - tokens.push({ - value: matched, - type: type, - matches: match - }); - soFar = soFar.slice( matched.length ); - } - } - - if ( !matched ) { - break; - } - } - - // Return the length of the invalid excess - // if we're just parsing - // Otherwise, throw an error or return tokens - return parseOnly ? - soFar.length : - soFar ? - Sizzle.error( selector ) : - // Cache the tokens - tokenCache( selector, groups ).slice( 0 ); -}; - -function toSelector( tokens ) { - var i = 0, - len = tokens.length, - selector = ""; - for ( ; i < len; i++ ) { - selector += tokens[i].value; - } - return selector; -} - -function addCombinator( matcher, combinator, base ) { - var dir = combinator.dir, - skip = combinator.next, - key = skip || dir, - checkNonElements = base && key === "parentNode", - doneName = done++; - - return combinator.first ? - // Check against closest ancestor/preceding element - function( elem, context, xml ) { - while ( (elem = elem[ dir ]) ) { - if ( elem.nodeType === 1 || checkNonElements ) { - return matcher( elem, context, xml ); - } - } - return false; - } : - - // Check against all ancestor/preceding elements - function( elem, context, xml ) { - var oldCache, uniqueCache, outerCache, - newCache = [ dirruns, doneName ]; - - // We can't set arbitrary data on XML nodes, so they don't benefit from combinator caching - if ( xml ) { - while ( (elem = elem[ dir ]) ) { - if ( elem.nodeType === 1 || checkNonElements ) { - if ( matcher( elem, context, xml ) ) { - return true; - } - } - } - } else { - while ( (elem = elem[ dir ]) ) { - if ( elem.nodeType === 1 || checkNonElements ) { - outerCache = elem[ expando ] || (elem[ expando ] = {}); - - // Support: IE <9 only - // Defend against cloned attroperties (jQuery gh-1709) - uniqueCache = outerCache[ elem.uniqueID ] || (outerCache[ elem.uniqueID ] = {}); - - if ( skip && skip === elem.nodeName.toLowerCase() ) { - elem = elem[ dir ] || elem; - } else if ( (oldCache = uniqueCache[ key ]) && - oldCache[ 0 ] === dirruns && oldCache[ 1 ] === doneName ) { - - // Assign to newCache so results back-propagate to previous elements - return (newCache[ 2 ] = oldCache[ 2 ]); - } else { - // Reuse newcache so results back-propagate to previous elements - uniqueCache[ key ] = newCache; - - // A match means we're done; a fail means we have to keep checking - if ( (newCache[ 2 ] = matcher( elem, context, xml )) ) { - return true; - } - } - } - } - } - return false; - }; -} - -function elementMatcher( matchers ) { - return matchers.length > 1 ? - function( elem, context, xml ) { - var i = matchers.length; - while ( i-- ) { - if ( !matchers[i]( elem, context, xml ) ) { - return false; - } - } - return true; - } : - matchers[0]; -} - -function multipleContexts( selector, contexts, results ) { - var i = 0, - len = contexts.length; - for ( ; i < len; i++ ) { - Sizzle( selector, contexts[i], results ); - } - return results; -} - -function condense( unmatched, map, filter, context, xml ) { - var elem, - newUnmatched = [], - i = 0, - len = unmatched.length, - mapped = map != null; - - for ( ; i < len; i++ ) { - if ( (elem = unmatched[i]) ) { - if ( !filter || filter( elem, context, xml ) ) { - newUnmatched.push( elem ); - if ( mapped ) { - map.push( i ); - } - } - } - } - - return newUnmatched; -} - -function setMatcher( preFilter, selector, matcher, postFilter, postFinder, postSelector ) { - if ( postFilter && !postFilter[ expando ] ) { - postFilter = setMatcher( postFilter ); - } - if ( postFinder && !postFinder[ expando ] ) { - postFinder = setMatcher( postFinder, postSelector ); - } - return markFunction(function( seed, results, context, xml ) { - var temp, i, elem, - preMap = [], - postMap = [], - preexisting = results.length, - - // Get initial elements from seed or context - elems = seed || multipleContexts( selector || "*", context.nodeType ? [ context ] : context, [] ), - - // Prefilter to get matcher input, preserving a map for seed-results synchronization - matcherIn = preFilter && ( seed || !selector ) ? - condense( elems, preMap, preFilter, context, xml ) : - elems, - - matcherOut = matcher ? - // If we have a postFinder, or filtered seed, or non-seed postFilter or preexisting results, - postFinder || ( seed ? preFilter : preexisting || postFilter ) ? - - // ...intermediate processing is necessary - [] : - - // ...otherwise use results directly - results : - matcherIn; - - // Find primary matches - if ( matcher ) { - matcher( matcherIn, matcherOut, context, xml ); - } - - // Apply postFilter - if ( postFilter ) { - temp = condense( matcherOut, postMap ); - postFilter( temp, [], context, xml ); - - // Un-match failing elements by moving them back to matcherIn - i = temp.length; - while ( i-- ) { - if ( (elem = temp[i]) ) { - matcherOut[ postMap[i] ] = !(matcherIn[ postMap[i] ] = elem); - } - } - } - - if ( seed ) { - if ( postFinder || preFilter ) { - if ( postFinder ) { - // Get the final matcherOut by condensing this intermediate into postFinder contexts - temp = []; - i = matcherOut.length; - while ( i-- ) { - if ( (elem = matcherOut[i]) ) { - // Restore matcherIn since elem is not yet a final match - temp.push( (matcherIn[i] = elem) ); - } - } - postFinder( null, (matcherOut = []), temp, xml ); - } - - // Move matched elements from seed to results to keep them synchronized - i = matcherOut.length; - while ( i-- ) { - if ( (elem = matcherOut[i]) && - (temp = postFinder ? indexOf( seed, elem ) : preMap[i]) > -1 ) { - - seed[temp] = !(results[temp] = elem); - } - } - } - - // Add elements to results, through postFinder if defined - } else { - matcherOut = condense( - matcherOut === results ? - matcherOut.splice( preexisting, matcherOut.length ) : - matcherOut - ); - if ( postFinder ) { - postFinder( null, results, matcherOut, xml ); - } else { - push.apply( results, matcherOut ); - } - } - }); -} - -function matcherFromTokens( tokens ) { - var checkContext, matcher, j, - len = tokens.length, - leadingRelative = Expr.relative[ tokens[0].type ], - implicitRelative = leadingRelative || Expr.relative[" "], - i = leadingRelative ? 1 : 0, - - // The foundational matcher ensures that elements are reachable from top-level context(s) - matchContext = addCombinator( function( elem ) { - return elem === checkContext; - }, implicitRelative, true ), - matchAnyContext = addCombinator( function( elem ) { - return indexOf( checkContext, elem ) > -1; - }, implicitRelative, true ), - matchers = [ function( elem, context, xml ) { - var ret = ( !leadingRelative && ( xml || context !== outermostContext ) ) || ( - (checkContext = context).nodeType ? - matchContext( elem, context, xml ) : - matchAnyContext( elem, context, xml ) ); - // Avoid hanging onto element (issue #299) - checkContext = null; - return ret; - } ]; - - for ( ; i < len; i++ ) { - if ( (matcher = Expr.relative[ tokens[i].type ]) ) { - matchers = [ addCombinator(elementMatcher( matchers ), matcher) ]; - } else { - matcher = Expr.filter[ tokens[i].type ].apply( null, tokens[i].matches ); - - // Return special upon seeing a positional matcher - if ( matcher[ expando ] ) { - // Find the next relative operator (if any) for proper handling - j = ++i; - for ( ; j < len; j++ ) { - if ( Expr.relative[ tokens[j].type ] ) { - break; - } - } - return setMatcher( - i > 1 && elementMatcher( matchers ), - i > 1 && toSelector( - // If the preceding token was a descendant combinator, insert an implicit any-element `*` - tokens.slice( 0, i - 1 ).concat({ value: tokens[ i - 2 ].type === " " ? "*" : "" }) - ).replace( rtrim, "$1" ), - matcher, - i < j && matcherFromTokens( tokens.slice( i, j ) ), - j < len && matcherFromTokens( (tokens = tokens.slice( j )) ), - j < len && toSelector( tokens ) - ); - } - matchers.push( matcher ); - } - } - - return elementMatcher( matchers ); -} - -function matcherFromGroupMatchers( elementMatchers, setMatchers ) { - var bySet = setMatchers.length > 0, - byElement = elementMatchers.length > 0, - superMatcher = function( seed, context, xml, results, outermost ) { - var elem, j, matcher, - matchedCount = 0, - i = "0", - unmatched = seed && [], - setMatched = [], - contextBackup = outermostContext, - // We must always have either seed elements or outermost context - elems = seed || byElement && Expr.find["TAG"]( "*", outermost ), - // Use integer dirruns iff this is the outermost matcher - dirrunsUnique = (dirruns += contextBackup == null ? 1 : Math.random() || 0.1), - len = elems.length; - - if ( outermost ) { - outermostContext = context === document || context || outermost; - } - - // Add elements passing elementMatchers directly to results - // Support: IE<9, Safari - // Tolerate NodeList properties (IE: "length"; Safari: ) matching elements by id - for ( ; i !== len && (elem = elems[i]) != null; i++ ) { - if ( byElement && elem ) { - j = 0; - if ( !context && elem.ownerDocument !== document ) { - setDocument( elem ); - xml = !documentIsHTML; - } - while ( (matcher = elementMatchers[j++]) ) { - if ( matcher( elem, context || document, xml) ) { - results.push( elem ); - break; - } - } - if ( outermost ) { - dirruns = dirrunsUnique; - } - } - - // Track unmatched elements for set filters - if ( bySet ) { - // They will have gone through all possible matchers - if ( (elem = !matcher && elem) ) { - matchedCount--; - } - - // Lengthen the array for every element, matched or not - if ( seed ) { - unmatched.push( elem ); - } - } - } - - // `i` is now the count of elements visited above, and adding it to `matchedCount` - // makes the latter nonnegative. - matchedCount += i; - - // Apply set filters to unmatched elements - // NOTE: This can be skipped if there are no unmatched elements (i.e., `matchedCount` - // equals `i`), unless we didn't visit _any_ elements in the above loop because we have - // no element matchers and no seed. - // Incrementing an initially-string "0" `i` allows `i` to remain a string only in that - // case, which will result in a "00" `matchedCount` that differs from `i` but is also - // numerically zero. - if ( bySet && i !== matchedCount ) { - j = 0; - while ( (matcher = setMatchers[j++]) ) { - matcher( unmatched, setMatched, context, xml ); - } - - if ( seed ) { - // Reintegrate element matches to eliminate the need for sorting - if ( matchedCount > 0 ) { - while ( i-- ) { - if ( !(unmatched[i] || setMatched[i]) ) { - setMatched[i] = pop.call( results ); - } - } - } - - // Discard index placeholder values to get only actual matches - setMatched = condense( setMatched ); - } - - // Add matches to results - push.apply( results, setMatched ); - - // Seedless set matches succeeding multiple successful matchers stipulate sorting - if ( outermost && !seed && setMatched.length > 0 && - ( matchedCount + setMatchers.length ) > 1 ) { - - Sizzle.uniqueSort( results ); - } - } - - // Override manipulation of globals by nested matchers - if ( outermost ) { - dirruns = dirrunsUnique; - outermostContext = contextBackup; - } - - return unmatched; - }; - - return bySet ? - markFunction( superMatcher ) : - superMatcher; -} - -compile = Sizzle.compile = function( selector, match /* Internal Use Only */ ) { - var i, - setMatchers = [], - elementMatchers = [], - cached = compilerCache[ selector + " " ]; - - if ( !cached ) { - // Generate a function of recursive functions that can be used to check each element - if ( !match ) { - match = tokenize( selector ); - } - i = match.length; - while ( i-- ) { - cached = matcherFromTokens( match[i] ); - if ( cached[ expando ] ) { - setMatchers.push( cached ); - } else { - elementMatchers.push( cached ); - } - } - - // Cache the compiled function - cached = compilerCache( selector, matcherFromGroupMatchers( elementMatchers, setMatchers ) ); - - // Save selector and tokenization - cached.selector = selector; - } - return cached; -}; - -/** - * A low-level selection function that works with Sizzle's compiled - * selector functions - * @param {String|Function} selector A selector or a pre-compiled - * selector function built with Sizzle.compile - * @param {Element} context - * @param {Array} [results] - * @param {Array} [seed] A set of elements to match against - */ -select = Sizzle.select = function( selector, context, results, seed ) { - var i, tokens, token, type, find, - compiled = typeof selector === "function" && selector, - match = !seed && tokenize( (selector = compiled.selector || selector) ); - - results = results || []; - - // Try to minimize operations if there is only one selector in the list and no seed - // (the latter of which guarantees us context) - if ( match.length === 1 ) { - - // Reduce context if the leading compound selector is an ID - tokens = match[0] = match[0].slice( 0 ); - if ( tokens.length > 2 && (token = tokens[0]).type === "ID" && - context.nodeType === 9 && documentIsHTML && Expr.relative[ tokens[1].type ] ) { - - context = ( Expr.find["ID"]( token.matches[0].replace(runescape, funescape), context ) || [] )[0]; - if ( !context ) { - return results; - - // Precompiled matchers will still verify ancestry, so step up a level - } else if ( compiled ) { - context = context.parentNode; - } - - selector = selector.slice( tokens.shift().value.length ); - } - - // Fetch a seed set for right-to-left matching - i = matchExpr["needsContext"].test( selector ) ? 0 : tokens.length; - while ( i-- ) { - token = tokens[i]; - - // Abort if we hit a combinator - if ( Expr.relative[ (type = token.type) ] ) { - break; - } - if ( (find = Expr.find[ type ]) ) { - // Search, expanding context for leading sibling combinators - if ( (seed = find( - token.matches[0].replace( runescape, funescape ), - rsibling.test( tokens[0].type ) && testContext( context.parentNode ) || context - )) ) { - - // If seed is empty or no tokens remain, we can return early - tokens.splice( i, 1 ); - selector = seed.length && toSelector( tokens ); - if ( !selector ) { - push.apply( results, seed ); - return results; - } - - break; - } - } - } - } - - // Compile and execute a filtering function if one is not provided - // Provide `match` to avoid retokenization if we modified the selector above - ( compiled || compile( selector, match ) )( - seed, - context, - !documentIsHTML, - results, - !context || rsibling.test( selector ) && testContext( context.parentNode ) || context - ); - return results; -}; - -// One-time assignments - -// Sort stability -support.sortStable = expando.split("").sort( sortOrder ).join("") === expando; - -// Support: Chrome 14-35+ -// Always assume duplicates if they aren't passed to the comparison function -support.detectDuplicates = !!hasDuplicate; - -// Initialize against the default document -setDocument(); - -// Support: Webkit<537.32 - Safari 6.0.3/Chrome 25 (fixed in Chrome 27) -// Detached nodes confoundingly follow *each other* -support.sortDetached = assert(function( el ) { - // Should return 1, but returns 4 (following) - return el.compareDocumentPosition( document.createElement("fieldset") ) & 1; -}); - -// Support: IE<8 -// Prevent attribute/property "interpolation" -// https://msdn.microsoft.com/en-us/library/ms536429%28VS.85%29.aspx -if ( !assert(function( el ) { - el.innerHTML = ""; - return el.firstChild.getAttribute("href") === "#" ; -}) ) { - addHandle( "type|href|height|width", function( elem, name, isXML ) { - if ( !isXML ) { - return elem.getAttribute( name, name.toLowerCase() === "type" ? 1 : 2 ); - } - }); -} - -// Support: IE<9 -// Use defaultValue in place of getAttribute("value") -if ( !support.attributes || !assert(function( el ) { - el.innerHTML = ""; - el.firstChild.setAttribute( "value", "" ); - return el.firstChild.getAttribute( "value" ) === ""; -}) ) { - addHandle( "value", function( elem, name, isXML ) { - if ( !isXML && elem.nodeName.toLowerCase() === "input" ) { - return elem.defaultValue; - } - }); -} - -// Support: IE<9 -// Use getAttributeNode to fetch booleans when getAttribute lies -if ( !assert(function( el ) { - return el.getAttribute("disabled") == null; -}) ) { - addHandle( booleans, function( elem, name, isXML ) { - var val; - if ( !isXML ) { - return elem[ name ] === true ? name.toLowerCase() : - (val = elem.getAttributeNode( name )) && val.specified ? - val.value : - null; - } - }); -} - -return Sizzle; - -})( window ); - - - -jQuery.find = Sizzle; -jQuery.expr = Sizzle.selectors; - -// Deprecated -jQuery.expr[ ":" ] = jQuery.expr.pseudos; -jQuery.uniqueSort = jQuery.unique = Sizzle.uniqueSort; -jQuery.text = Sizzle.getText; -jQuery.isXMLDoc = Sizzle.isXML; -jQuery.contains = Sizzle.contains; -jQuery.escapeSelector = Sizzle.escape; - - - - -var dir = function( elem, dir, until ) { - var matched = [], - truncate = until !== undefined; - - while ( ( elem = elem[ dir ] ) && elem.nodeType !== 9 ) { - if ( elem.nodeType === 1 ) { - if ( truncate && jQuery( elem ).is( until ) ) { - break; - } - matched.push( elem ); - } - } - return matched; -}; - - -var siblings = function( n, elem ) { - var matched = []; - - for ( ; n; n = n.nextSibling ) { - if ( n.nodeType === 1 && n !== elem ) { - matched.push( n ); - } - } - - return matched; -}; - - -var rneedsContext = jQuery.expr.match.needsContext; - - - -function nodeName( elem, name ) { - - return elem.nodeName && elem.nodeName.toLowerCase() === name.toLowerCase(); - -}; -var rsingleTag = ( /^<([a-z][^\/\0>:\x20\t\r\n\f]*)[\x20\t\r\n\f]*\/?>(?:<\/\1>|)$/i ); - - - -// Implement the identical functionality for filter and not -function winnow( elements, qualifier, not ) { - if ( isFunction( qualifier ) ) { - return jQuery.grep( elements, function( elem, i ) { - return !!qualifier.call( elem, i, elem ) !== not; - } ); - } - - // Single element - if ( qualifier.nodeType ) { - return jQuery.grep( elements, function( elem ) { - return ( elem === qualifier ) !== not; - } ); - } - - // Arraylike of elements (jQuery, arguments, Array) - if ( typeof qualifier !== "string" ) { - return jQuery.grep( elements, function( elem ) { - return ( indexOf.call( qualifier, elem ) > -1 ) !== not; - } ); - } - - // Filtered directly for both simple and complex selectors - return jQuery.filter( qualifier, elements, not ); -} - -jQuery.filter = function( expr, elems, not ) { - var elem = elems[ 0 ]; - - if ( not ) { - expr = ":not(" + expr + ")"; - } - - if ( elems.length === 1 && elem.nodeType === 1 ) { - return jQuery.find.matchesSelector( elem, expr ) ? [ elem ] : []; - } - - return jQuery.find.matches( expr, jQuery.grep( elems, function( elem ) { - return elem.nodeType === 1; - } ) ); -}; - -jQuery.fn.extend( { - find: function( selector ) { - var i, ret, - len = this.length, - self = this; - - if ( typeof selector !== "string" ) { - return this.pushStack( jQuery( selector ).filter( function() { - for ( i = 0; i < len; i++ ) { - if ( jQuery.contains( self[ i ], this ) ) { - return true; - } - } - } ) ); - } - - ret = this.pushStack( [] ); - - for ( i = 0; i < len; i++ ) { - jQuery.find( selector, self[ i ], ret ); - } - - return len > 1 ? jQuery.uniqueSort( ret ) : ret; - }, - filter: function( selector ) { - return this.pushStack( winnow( this, selector || [], false ) ); - }, - not: function( selector ) { - return this.pushStack( winnow( this, selector || [], true ) ); - }, - is: function( selector ) { - return !!winnow( - this, - - // If this is a positional/relative selector, check membership in the returned set - // so $("p:first").is("p:last") won't return true for a doc with two "p". - typeof selector === "string" && rneedsContext.test( selector ) ? - jQuery( selector ) : - selector || [], - false - ).length; - } -} ); - - -// Initialize a jQuery object - - -// A central reference to the root jQuery(document) -var rootjQuery, - - // A simple way to check for HTML strings - // Prioritize #id over to avoid XSS via location.hash (#9521) - // Strict HTML recognition (#11290: must start with <) - // Shortcut simple #id case for speed - rquickExpr = /^(?:\s*(<[\w\W]+>)[^>]*|#([\w-]+))$/, - - init = jQuery.fn.init = function( selector, context, root ) { - var match, elem; - - // HANDLE: $(""), $(null), $(undefined), $(false) - if ( !selector ) { - return this; - } - - // Method init() accepts an alternate rootjQuery - // so migrate can support jQuery.sub (gh-2101) - root = root || rootjQuery; - - // Handle HTML strings - if ( typeof selector === "string" ) { - if ( selector[ 0 ] === "<" && - selector[ selector.length - 1 ] === ">" && - selector.length >= 3 ) { - - // Assume that strings that start and end with <> are HTML and skip the regex check - match = [ null, selector, null ]; - - } else { - match = rquickExpr.exec( selector ); - } - - // Match html or make sure no context is specified for #id - if ( match && ( match[ 1 ] || !context ) ) { - - // HANDLE: $(html) -> $(array) - if ( match[ 1 ] ) { - context = context instanceof jQuery ? context[ 0 ] : context; - - // Option to run scripts is true for back-compat - // Intentionally let the error be thrown if parseHTML is not present - jQuery.merge( this, jQuery.parseHTML( - match[ 1 ], - context && context.nodeType ? context.ownerDocument || context : document, - true - ) ); - - // HANDLE: $(html, props) - if ( rsingleTag.test( match[ 1 ] ) && jQuery.isPlainObject( context ) ) { - for ( match in context ) { - - // Properties of context are called as methods if possible - if ( isFunction( this[ match ] ) ) { - this[ match ]( context[ match ] ); - - // ...and otherwise set as attributes - } else { - this.attr( match, context[ match ] ); - } - } - } - - return this; - - // HANDLE: $(#id) - } else { - elem = document.getElementById( match[ 2 ] ); - - if ( elem ) { - - // Inject the element directly into the jQuery object - this[ 0 ] = elem; - this.length = 1; - } - return this; - } - - // HANDLE: $(expr, $(...)) - } else if ( !context || context.jquery ) { - return ( context || root ).find( selector ); - - // HANDLE: $(expr, context) - // (which is just equivalent to: $(context).find(expr) - } else { - return this.constructor( context ).find( selector ); - } - - // HANDLE: $(DOMElement) - } else if ( selector.nodeType ) { - this[ 0 ] = selector; - this.length = 1; - return this; - - // HANDLE: $(function) - // Shortcut for document ready - } else if ( isFunction( selector ) ) { - return root.ready !== undefined ? - root.ready( selector ) : - - // Execute immediately if ready is not present - selector( jQuery ); - } - - return jQuery.makeArray( selector, this ); - }; - -// Give the init function the jQuery prototype for later instantiation -init.prototype = jQuery.fn; - -// Initialize central reference -rootjQuery = jQuery( document ); - - -var rparentsprev = /^(?:parents|prev(?:Until|All))/, - - // Methods guaranteed to produce a unique set when starting from a unique set - guaranteedUnique = { - children: true, - contents: true, - next: true, - prev: true - }; - -jQuery.fn.extend( { - has: function( target ) { - var targets = jQuery( target, this ), - l = targets.length; - - return this.filter( function() { - var i = 0; - for ( ; i < l; i++ ) { - if ( jQuery.contains( this, targets[ i ] ) ) { - return true; - } - } - } ); - }, - - closest: function( selectors, context ) { - var cur, - i = 0, - l = this.length, - matched = [], - targets = typeof selectors !== "string" && jQuery( selectors ); - - // Positional selectors never match, since there's no _selection_ context - if ( !rneedsContext.test( selectors ) ) { - for ( ; i < l; i++ ) { - for ( cur = this[ i ]; cur && cur !== context; cur = cur.parentNode ) { - - // Always skip document fragments - if ( cur.nodeType < 11 && ( targets ? - targets.index( cur ) > -1 : - - // Don't pass non-elements to Sizzle - cur.nodeType === 1 && - jQuery.find.matchesSelector( cur, selectors ) ) ) { - - matched.push( cur ); - break; - } - } - } - } - - return this.pushStack( matched.length > 1 ? jQuery.uniqueSort( matched ) : matched ); - }, - - // Determine the position of an element within the set - index: function( elem ) { - - // No argument, return index in parent - if ( !elem ) { - return ( this[ 0 ] && this[ 0 ].parentNode ) ? this.first().prevAll().length : -1; - } - - // Index in selector - if ( typeof elem === "string" ) { - return indexOf.call( jQuery( elem ), this[ 0 ] ); - } - - // Locate the position of the desired element - return indexOf.call( this, - - // If it receives a jQuery object, the first element is used - elem.jquery ? elem[ 0 ] : elem - ); - }, - - add: function( selector, context ) { - return this.pushStack( - jQuery.uniqueSort( - jQuery.merge( this.get(), jQuery( selector, context ) ) - ) - ); - }, - - addBack: function( selector ) { - return this.add( selector == null ? - this.prevObject : this.prevObject.filter( selector ) - ); - } -} ); - -function sibling( cur, dir ) { - while ( ( cur = cur[ dir ] ) && cur.nodeType !== 1 ) {} - return cur; -} - -jQuery.each( { - parent: function( elem ) { - var parent = elem.parentNode; - return parent && parent.nodeType !== 11 ? parent : null; - }, - parents: function( elem ) { - return dir( elem, "parentNode" ); - }, - parentsUntil: function( elem, i, until ) { - return dir( elem, "parentNode", until ); - }, - next: function( elem ) { - return sibling( elem, "nextSibling" ); - }, - prev: function( elem ) { - return sibling( elem, "previousSibling" ); - }, - nextAll: function( elem ) { - return dir( elem, "nextSibling" ); - }, - prevAll: function( elem ) { - return dir( elem, "previousSibling" ); - }, - nextUntil: function( elem, i, until ) { - return dir( elem, "nextSibling", until ); - }, - prevUntil: function( elem, i, until ) { - return dir( elem, "previousSibling", until ); - }, - siblings: function( elem ) { - return siblings( ( elem.parentNode || {} ).firstChild, elem ); - }, - children: function( elem ) { - return siblings( elem.firstChild ); - }, - contents: function( elem ) { - if ( typeof elem.contentDocument !== "undefined" ) { - return elem.contentDocument; - } - - // Support: IE 9 - 11 only, iOS 7 only, Android Browser <=4.3 only - // Treat the template element as a regular one in browsers that - // don't support it. - if ( nodeName( elem, "template" ) ) { - elem = elem.content || elem; - } - - return jQuery.merge( [], elem.childNodes ); - } -}, function( name, fn ) { - jQuery.fn[ name ] = function( until, selector ) { - var matched = jQuery.map( this, fn, until ); - - if ( name.slice( -5 ) !== "Until" ) { - selector = until; - } - - if ( selector && typeof selector === "string" ) { - matched = jQuery.filter( selector, matched ); - } - - if ( this.length > 1 ) { - - // Remove duplicates - if ( !guaranteedUnique[ name ] ) { - jQuery.uniqueSort( matched ); - } - - // Reverse order for parents* and prev-derivatives - if ( rparentsprev.test( name ) ) { - matched.reverse(); - } - } - - return this.pushStack( matched ); - }; -} ); -var rnothtmlwhite = ( /[^\x20\t\r\n\f]+/g ); - - - -// Convert String-formatted options into Object-formatted ones -function createOptions( options ) { - var object = {}; - jQuery.each( options.match( rnothtmlwhite ) || [], function( _, flag ) { - object[ flag ] = true; - } ); - return object; -} - -/* - * Create a callback list using the following parameters: - * - * options: an optional list of space-separated options that will change how - * the callback list behaves or a more traditional option object - * - * By default a callback list will act like an event callback list and can be - * "fired" multiple times. - * - * Possible options: - * - * once: will ensure the callback list can only be fired once (like a Deferred) - * - * memory: will keep track of previous values and will call any callback added - * after the list has been fired right away with the latest "memorized" - * values (like a Deferred) - * - * unique: will ensure a callback can only be added once (no duplicate in the list) - * - * stopOnFalse: interrupt callings when a callback returns false - * - */ -jQuery.Callbacks = function( options ) { - - // Convert options from String-formatted to Object-formatted if needed - // (we check in cache first) - options = typeof options === "string" ? - createOptions( options ) : - jQuery.extend( {}, options ); - - var // Flag to know if list is currently firing - firing, - - // Last fire value for non-forgettable lists - memory, - - // Flag to know if list was already fired - fired, - - // Flag to prevent firing - locked, - - // Actual callback list - list = [], - - // Queue of execution data for repeatable lists - queue = [], - - // Index of currently firing callback (modified by add/remove as needed) - firingIndex = -1, - - // Fire callbacks - fire = function() { - - // Enforce single-firing - locked = locked || options.once; - - // Execute callbacks for all pending executions, - // respecting firingIndex overrides and runtime changes - fired = firing = true; - for ( ; queue.length; firingIndex = -1 ) { - memory = queue.shift(); - while ( ++firingIndex < list.length ) { - - // Run callback and check for early termination - if ( list[ firingIndex ].apply( memory[ 0 ], memory[ 1 ] ) === false && - options.stopOnFalse ) { - - // Jump to end and forget the data so .add doesn't re-fire - firingIndex = list.length; - memory = false; - } - } - } - - // Forget the data if we're done with it - if ( !options.memory ) { - memory = false; - } - - firing = false; - - // Clean up if we're done firing for good - if ( locked ) { - - // Keep an empty list if we have data for future add calls - if ( memory ) { - list = []; - - // Otherwise, this object is spent - } else { - list = ""; - } - } - }, - - // Actual Callbacks object - self = { - - // Add a callback or a collection of callbacks to the list - add: function() { - if ( list ) { - - // If we have memory from a past run, we should fire after adding - if ( memory && !firing ) { - firingIndex = list.length - 1; - queue.push( memory ); - } - - ( function add( args ) { - jQuery.each( args, function( _, arg ) { - if ( isFunction( arg ) ) { - if ( !options.unique || !self.has( arg ) ) { - list.push( arg ); - } - } else if ( arg && arg.length && toType( arg ) !== "string" ) { - - // Inspect recursively - add( arg ); - } - } ); - } )( arguments ); - - if ( memory && !firing ) { - fire(); - } - } - return this; - }, - - // Remove a callback from the list - remove: function() { - jQuery.each( arguments, function( _, arg ) { - var index; - while ( ( index = jQuery.inArray( arg, list, index ) ) > -1 ) { - list.splice( index, 1 ); - - // Handle firing indexes - if ( index <= firingIndex ) { - firingIndex--; - } - } - } ); - return this; - }, - - // Check if a given callback is in the list. - // If no argument is given, return whether or not list has callbacks attached. - has: function( fn ) { - return fn ? - jQuery.inArray( fn, list ) > -1 : - list.length > 0; - }, - - // Remove all callbacks from the list - empty: function() { - if ( list ) { - list = []; - } - return this; - }, - - // Disable .fire and .add - // Abort any current/pending executions - // Clear all callbacks and values - disable: function() { - locked = queue = []; - list = memory = ""; - return this; - }, - disabled: function() { - return !list; - }, - - // Disable .fire - // Also disable .add unless we have memory (since it would have no effect) - // Abort any pending executions - lock: function() { - locked = queue = []; - if ( !memory && !firing ) { - list = memory = ""; - } - return this; - }, - locked: function() { - return !!locked; - }, - - // Call all callbacks with the given context and arguments - fireWith: function( context, args ) { - if ( !locked ) { - args = args || []; - args = [ context, args.slice ? args.slice() : args ]; - queue.push( args ); - if ( !firing ) { - fire(); - } - } - return this; - }, - - // Call all the callbacks with the given arguments - fire: function() { - self.fireWith( this, arguments ); - return this; - }, - - // To know if the callbacks have already been called at least once - fired: function() { - return !!fired; - } - }; - - return self; -}; - - -function Identity( v ) { - return v; -} -function Thrower( ex ) { - throw ex; -} - -function adoptValue( value, resolve, reject, noValue ) { - var method; - - try { - - // Check for promise aspect first to privilege synchronous behavior - if ( value && isFunction( ( method = value.promise ) ) ) { - method.call( value ).done( resolve ).fail( reject ); - - // Other thenables - } else if ( value && isFunction( ( method = value.then ) ) ) { - method.call( value, resolve, reject ); - - // Other non-thenables - } else { - - // Control `resolve` arguments by letting Array#slice cast boolean `noValue` to integer: - // * false: [ value ].slice( 0 ) => resolve( value ) - // * true: [ value ].slice( 1 ) => resolve() - resolve.apply( undefined, [ value ].slice( noValue ) ); - } - - // For Promises/A+, convert exceptions into rejections - // Since jQuery.when doesn't unwrap thenables, we can skip the extra checks appearing in - // Deferred#then to conditionally suppress rejection. - } catch ( value ) { - - // Support: Android 4.0 only - // Strict mode functions invoked without .call/.apply get global-object context - reject.apply( undefined, [ value ] ); - } -} - -jQuery.extend( { - - Deferred: function( func ) { - var tuples = [ - - // action, add listener, callbacks, - // ... .then handlers, argument index, [final state] - [ "notify", "progress", jQuery.Callbacks( "memory" ), - jQuery.Callbacks( "memory" ), 2 ], - [ "resolve", "done", jQuery.Callbacks( "once memory" ), - jQuery.Callbacks( "once memory" ), 0, "resolved" ], - [ "reject", "fail", jQuery.Callbacks( "once memory" ), - jQuery.Callbacks( "once memory" ), 1, "rejected" ] - ], - state = "pending", - promise = { - state: function() { - return state; - }, - always: function() { - deferred.done( arguments ).fail( arguments ); - return this; - }, - "catch": function( fn ) { - return promise.then( null, fn ); - }, - - // Keep pipe for back-compat - pipe: function( /* fnDone, fnFail, fnProgress */ ) { - var fns = arguments; - - return jQuery.Deferred( function( newDefer ) { - jQuery.each( tuples, function( i, tuple ) { - - // Map tuples (progress, done, fail) to arguments (done, fail, progress) - var fn = isFunction( fns[ tuple[ 4 ] ] ) && fns[ tuple[ 4 ] ]; - - // deferred.progress(function() { bind to newDefer or newDefer.notify }) - // deferred.done(function() { bind to newDefer or newDefer.resolve }) - // deferred.fail(function() { bind to newDefer or newDefer.reject }) - deferred[ tuple[ 1 ] ]( function() { - var returned = fn && fn.apply( this, arguments ); - if ( returned && isFunction( returned.promise ) ) { - returned.promise() - .progress( newDefer.notify ) - .done( newDefer.resolve ) - .fail( newDefer.reject ); - } else { - newDefer[ tuple[ 0 ] + "With" ]( - this, - fn ? [ returned ] : arguments - ); - } - } ); - } ); - fns = null; - } ).promise(); - }, - then: function( onFulfilled, onRejected, onProgress ) { - var maxDepth = 0; - function resolve( depth, deferred, handler, special ) { - return function() { - var that = this, - args = arguments, - mightThrow = function() { - var returned, then; - - // Support: Promises/A+ section 2.3.3.3.3 - // https://promisesaplus.com/#point-59 - // Ignore double-resolution attempts - if ( depth < maxDepth ) { - return; - } - - returned = handler.apply( that, args ); - - // Support: Promises/A+ section 2.3.1 - // https://promisesaplus.com/#point-48 - if ( returned === deferred.promise() ) { - throw new TypeError( "Thenable self-resolution" ); - } - - // Support: Promises/A+ sections 2.3.3.1, 3.5 - // https://promisesaplus.com/#point-54 - // https://promisesaplus.com/#point-75 - // Retrieve `then` only once - then = returned && - - // Support: Promises/A+ section 2.3.4 - // https://promisesaplus.com/#point-64 - // Only check objects and functions for thenability - ( typeof returned === "object" || - typeof returned === "function" ) && - returned.then; - - // Handle a returned thenable - if ( isFunction( then ) ) { - - // Special processors (notify) just wait for resolution - if ( special ) { - then.call( - returned, - resolve( maxDepth, deferred, Identity, special ), - resolve( maxDepth, deferred, Thrower, special ) - ); - - // Normal processors (resolve) also hook into progress - } else { - - // ...and disregard older resolution values - maxDepth++; - - then.call( - returned, - resolve( maxDepth, deferred, Identity, special ), - resolve( maxDepth, deferred, Thrower, special ), - resolve( maxDepth, deferred, Identity, - deferred.notifyWith ) - ); - } - - // Handle all other returned values - } else { - - // Only substitute handlers pass on context - // and multiple values (non-spec behavior) - if ( handler !== Identity ) { - that = undefined; - args = [ returned ]; - } - - // Process the value(s) - // Default process is resolve - ( special || deferred.resolveWith )( that, args ); - } - }, - - // Only normal processors (resolve) catch and reject exceptions - process = special ? - mightThrow : - function() { - try { - mightThrow(); - } catch ( e ) { - - if ( jQuery.Deferred.exceptionHook ) { - jQuery.Deferred.exceptionHook( e, - process.stackTrace ); - } - - // Support: Promises/A+ section 2.3.3.3.4.1 - // https://promisesaplus.com/#point-61 - // Ignore post-resolution exceptions - if ( depth + 1 >= maxDepth ) { - - // Only substitute handlers pass on context - // and multiple values (non-spec behavior) - if ( handler !== Thrower ) { - that = undefined; - args = [ e ]; - } - - deferred.rejectWith( that, args ); - } - } - }; - - // Support: Promises/A+ section 2.3.3.3.1 - // https://promisesaplus.com/#point-57 - // Re-resolve promises immediately to dodge false rejection from - // subsequent errors - if ( depth ) { - process(); - } else { - - // Call an optional hook to record the stack, in case of exception - // since it's otherwise lost when execution goes async - if ( jQuery.Deferred.getStackHook ) { - process.stackTrace = jQuery.Deferred.getStackHook(); - } - window.setTimeout( process ); - } - }; - } - - return jQuery.Deferred( function( newDefer ) { - - // progress_handlers.add( ... ) - tuples[ 0 ][ 3 ].add( - resolve( - 0, - newDefer, - isFunction( onProgress ) ? - onProgress : - Identity, - newDefer.notifyWith - ) - ); - - // fulfilled_handlers.add( ... ) - tuples[ 1 ][ 3 ].add( - resolve( - 0, - newDefer, - isFunction( onFulfilled ) ? - onFulfilled : - Identity - ) - ); - - // rejected_handlers.add( ... ) - tuples[ 2 ][ 3 ].add( - resolve( - 0, - newDefer, - isFunction( onRejected ) ? - onRejected : - Thrower - ) - ); - } ).promise(); - }, - - // Get a promise for this deferred - // If obj is provided, the promise aspect is added to the object - promise: function( obj ) { - return obj != null ? jQuery.extend( obj, promise ) : promise; - } - }, - deferred = {}; - - // Add list-specific methods - jQuery.each( tuples, function( i, tuple ) { - var list = tuple[ 2 ], - stateString = tuple[ 5 ]; - - // promise.progress = list.add - // promise.done = list.add - // promise.fail = list.add - promise[ tuple[ 1 ] ] = list.add; - - // Handle state - if ( stateString ) { - list.add( - function() { - - // state = "resolved" (i.e., fulfilled) - // state = "rejected" - state = stateString; - }, - - // rejected_callbacks.disable - // fulfilled_callbacks.disable - tuples[ 3 - i ][ 2 ].disable, - - // rejected_handlers.disable - // fulfilled_handlers.disable - tuples[ 3 - i ][ 3 ].disable, - - // progress_callbacks.lock - tuples[ 0 ][ 2 ].lock, - - // progress_handlers.lock - tuples[ 0 ][ 3 ].lock - ); - } - - // progress_handlers.fire - // fulfilled_handlers.fire - // rejected_handlers.fire - list.add( tuple[ 3 ].fire ); - - // deferred.notify = function() { deferred.notifyWith(...) } - // deferred.resolve = function() { deferred.resolveWith(...) } - // deferred.reject = function() { deferred.rejectWith(...) } - deferred[ tuple[ 0 ] ] = function() { - deferred[ tuple[ 0 ] + "With" ]( this === deferred ? undefined : this, arguments ); - return this; - }; - - // deferred.notifyWith = list.fireWith - // deferred.resolveWith = list.fireWith - // deferred.rejectWith = list.fireWith - deferred[ tuple[ 0 ] + "With" ] = list.fireWith; - } ); - - // Make the deferred a promise - promise.promise( deferred ); - - // Call given func if any - if ( func ) { - func.call( deferred, deferred ); - } - - // All done! - return deferred; - }, - - // Deferred helper - when: function( singleValue ) { - var - - // count of uncompleted subordinates - remaining = arguments.length, - - // count of unprocessed arguments - i = remaining, - - // subordinate fulfillment data - resolveContexts = Array( i ), - resolveValues = slice.call( arguments ), - - // the master Deferred - master = jQuery.Deferred(), - - // subordinate callback factory - updateFunc = function( i ) { - return function( value ) { - resolveContexts[ i ] = this; - resolveValues[ i ] = arguments.length > 1 ? slice.call( arguments ) : value; - if ( !( --remaining ) ) { - master.resolveWith( resolveContexts, resolveValues ); - } - }; - }; - - // Single- and empty arguments are adopted like Promise.resolve - if ( remaining <= 1 ) { - adoptValue( singleValue, master.done( updateFunc( i ) ).resolve, master.reject, - !remaining ); - - // Use .then() to unwrap secondary thenables (cf. gh-3000) - if ( master.state() === "pending" || - isFunction( resolveValues[ i ] && resolveValues[ i ].then ) ) { - - return master.then(); - } - } - - // Multiple arguments are aggregated like Promise.all array elements - while ( i-- ) { - adoptValue( resolveValues[ i ], updateFunc( i ), master.reject ); - } - - return master.promise(); - } -} ); - - -// These usually indicate a programmer mistake during development, -// warn about them ASAP rather than swallowing them by default. -var rerrorNames = /^(Eval|Internal|Range|Reference|Syntax|Type|URI)Error$/; - -jQuery.Deferred.exceptionHook = function( error, stack ) { - - // Support: IE 8 - 9 only - // Console exists when dev tools are open, which can happen at any time - if ( window.console && window.console.warn && error && rerrorNames.test( error.name ) ) { - window.console.warn( "jQuery.Deferred exception: " + error.message, error.stack, stack ); - } -}; - - - - -jQuery.readyException = function( error ) { - window.setTimeout( function() { - throw error; - } ); -}; - - - - -// The deferred used on DOM ready -var readyList = jQuery.Deferred(); - -jQuery.fn.ready = function( fn ) { - - readyList - .then( fn ) - - // Wrap jQuery.readyException in a function so that the lookup - // happens at the time of error handling instead of callback - // registration. - .catch( function( error ) { - jQuery.readyException( error ); - } ); - - return this; -}; - -jQuery.extend( { - - // Is the DOM ready to be used? Set to true once it occurs. - isReady: false, - - // A counter to track how many items to wait for before - // the ready event fires. See #6781 - readyWait: 1, - - // Handle when the DOM is ready - ready: function( wait ) { - - // Abort if there are pending holds or we're already ready - if ( wait === true ? --jQuery.readyWait : jQuery.isReady ) { - return; - } - - // Remember that the DOM is ready - jQuery.isReady = true; - - // If a normal DOM Ready event fired, decrement, and wait if need be - if ( wait !== true && --jQuery.readyWait > 0 ) { - return; - } - - // If there are functions bound, to execute - readyList.resolveWith( document, [ jQuery ] ); - } -} ); - -jQuery.ready.then = readyList.then; - -// The ready event handler and self cleanup method -function completed() { - document.removeEventListener( "DOMContentLoaded", completed ); - window.removeEventListener( "load", completed ); - jQuery.ready(); -} - -// Catch cases where $(document).ready() is called -// after the browser event has already occurred. -// Support: IE <=9 - 10 only -// Older IE sometimes signals "interactive" too soon -if ( document.readyState === "complete" || - ( document.readyState !== "loading" && !document.documentElement.doScroll ) ) { - - // Handle it asynchronously to allow scripts the opportunity to delay ready - window.setTimeout( jQuery.ready ); - -} else { - - // Use the handy event callback - document.addEventListener( "DOMContentLoaded", completed ); - - // A fallback to window.onload, that will always work - window.addEventListener( "load", completed ); -} - - - - -// Multifunctional method to get and set values of a collection -// The value/s can optionally be executed if it's a function -var access = function( elems, fn, key, value, chainable, emptyGet, raw ) { - var i = 0, - len = elems.length, - bulk = key == null; - - // Sets many values - if ( toType( key ) === "object" ) { - chainable = true; - for ( i in key ) { - access( elems, fn, i, key[ i ], true, emptyGet, raw ); - } - - // Sets one value - } else if ( value !== undefined ) { - chainable = true; - - if ( !isFunction( value ) ) { - raw = true; - } - - if ( bulk ) { - - // Bulk operations run against the entire set - if ( raw ) { - fn.call( elems, value ); - fn = null; - - // ...except when executing function values - } else { - bulk = fn; - fn = function( elem, key, value ) { - return bulk.call( jQuery( elem ), value ); - }; - } - } - - if ( fn ) { - for ( ; i < len; i++ ) { - fn( - elems[ i ], key, raw ? - value : - value.call( elems[ i ], i, fn( elems[ i ], key ) ) - ); - } - } - } - - if ( chainable ) { - return elems; - } - - // Gets - if ( bulk ) { - return fn.call( elems ); - } - - return len ? fn( elems[ 0 ], key ) : emptyGet; -}; - - -// Matches dashed string for camelizing -var rmsPrefix = /^-ms-/, - rdashAlpha = /-([a-z])/g; - -// Used by camelCase as callback to replace() -function fcamelCase( all, letter ) { - return letter.toUpperCase(); -} - -// Convert dashed to camelCase; used by the css and data modules -// Support: IE <=9 - 11, Edge 12 - 15 -// Microsoft forgot to hump their vendor prefix (#9572) -function camelCase( string ) { - return string.replace( rmsPrefix, "ms-" ).replace( rdashAlpha, fcamelCase ); -} -var acceptData = function( owner ) { - - // Accepts only: - // - Node - // - Node.ELEMENT_NODE - // - Node.DOCUMENT_NODE - // - Object - // - Any - return owner.nodeType === 1 || owner.nodeType === 9 || !( +owner.nodeType ); -}; - - - - -function Data() { - this.expando = jQuery.expando + Data.uid++; -} - -Data.uid = 1; - -Data.prototype = { - - cache: function( owner ) { - - // Check if the owner object already has a cache - var value = owner[ this.expando ]; - - // If not, create one - if ( !value ) { - value = {}; - - // We can accept data for non-element nodes in modern browsers, - // but we should not, see #8335. - // Always return an empty object. - if ( acceptData( owner ) ) { - - // If it is a node unlikely to be stringify-ed or looped over - // use plain assignment - if ( owner.nodeType ) { - owner[ this.expando ] = value; - - // Otherwise secure it in a non-enumerable property - // configurable must be true to allow the property to be - // deleted when data is removed - } else { - Object.defineProperty( owner, this.expando, { - value: value, - configurable: true - } ); - } - } - } - - return value; - }, - set: function( owner, data, value ) { - var prop, - cache = this.cache( owner ); - - // Handle: [ owner, key, value ] args - // Always use camelCase key (gh-2257) - if ( typeof data === "string" ) { - cache[ camelCase( data ) ] = value; - - // Handle: [ owner, { properties } ] args - } else { - - // Copy the properties one-by-one to the cache object - for ( prop in data ) { - cache[ camelCase( prop ) ] = data[ prop ]; - } - } - return cache; - }, - get: function( owner, key ) { - return key === undefined ? - this.cache( owner ) : - - // Always use camelCase key (gh-2257) - owner[ this.expando ] && owner[ this.expando ][ camelCase( key ) ]; - }, - access: function( owner, key, value ) { - - // In cases where either: - // - // 1. No key was specified - // 2. A string key was specified, but no value provided - // - // Take the "read" path and allow the get method to determine - // which value to return, respectively either: - // - // 1. The entire cache object - // 2. The data stored at the key - // - if ( key === undefined || - ( ( key && typeof key === "string" ) && value === undefined ) ) { - - return this.get( owner, key ); - } - - // When the key is not a string, or both a key and value - // are specified, set or extend (existing objects) with either: - // - // 1. An object of properties - // 2. A key and value - // - this.set( owner, key, value ); - - // Since the "set" path can have two possible entry points - // return the expected data based on which path was taken[*] - return value !== undefined ? value : key; - }, - remove: function( owner, key ) { - var i, - cache = owner[ this.expando ]; - - if ( cache === undefined ) { - return; - } - - if ( key !== undefined ) { - - // Support array or space separated string of keys - if ( Array.isArray( key ) ) { - - // If key is an array of keys... - // We always set camelCase keys, so remove that. - key = key.map( camelCase ); - } else { - key = camelCase( key ); - - // If a key with the spaces exists, use it. - // Otherwise, create an array by matching non-whitespace - key = key in cache ? - [ key ] : - ( key.match( rnothtmlwhite ) || [] ); - } - - i = key.length; - - while ( i-- ) { - delete cache[ key[ i ] ]; - } - } - - // Remove the expando if there's no more data - if ( key === undefined || jQuery.isEmptyObject( cache ) ) { - - // Support: Chrome <=35 - 45 - // Webkit & Blink performance suffers when deleting properties - // from DOM nodes, so set to undefined instead - // https://bugs.chromium.org/p/chromium/issues/detail?id=378607 (bug restricted) - if ( owner.nodeType ) { - owner[ this.expando ] = undefined; - } else { - delete owner[ this.expando ]; - } - } - }, - hasData: function( owner ) { - var cache = owner[ this.expando ]; - return cache !== undefined && !jQuery.isEmptyObject( cache ); - } -}; -var dataPriv = new Data(); - -var dataUser = new Data(); - - - -// Implementation Summary -// -// 1. Enforce API surface and semantic compatibility with 1.9.x branch -// 2. Improve the module's maintainability by reducing the storage -// paths to a single mechanism. -// 3. Use the same single mechanism to support "private" and "user" data. -// 4. _Never_ expose "private" data to user code (TODO: Drop _data, _removeData) -// 5. Avoid exposing implementation details on user objects (eg. expando properties) -// 6. Provide a clear path for implementation upgrade to WeakMap in 2014 - -var rbrace = /^(?:\{[\w\W]*\}|\[[\w\W]*\])$/, - rmultiDash = /[A-Z]/g; - -function getData( data ) { - if ( data === "true" ) { - return true; - } - - if ( data === "false" ) { - return false; - } - - if ( data === "null" ) { - return null; - } - - // Only convert to a number if it doesn't change the string - if ( data === +data + "" ) { - return +data; - } - - if ( rbrace.test( data ) ) { - return JSON.parse( data ); - } - - return data; -} - -function dataAttr( elem, key, data ) { - var name; - - // If nothing was found internally, try to fetch any - // data from the HTML5 data-* attribute - if ( data === undefined && elem.nodeType === 1 ) { - name = "data-" + key.replace( rmultiDash, "-$&" ).toLowerCase(); - data = elem.getAttribute( name ); - - if ( typeof data === "string" ) { - try { - data = getData( data ); - } catch ( e ) {} - - // Make sure we set the data so it isn't changed later - dataUser.set( elem, key, data ); - } else { - data = undefined; - } - } - return data; -} - -jQuery.extend( { - hasData: function( elem ) { - return dataUser.hasData( elem ) || dataPriv.hasData( elem ); - }, - - data: function( elem, name, data ) { - return dataUser.access( elem, name, data ); - }, - - removeData: function( elem, name ) { - dataUser.remove( elem, name ); - }, - - // TODO: Now that all calls to _data and _removeData have been replaced - // with direct calls to dataPriv methods, these can be deprecated. - _data: function( elem, name, data ) { - return dataPriv.access( elem, name, data ); - }, - - _removeData: function( elem, name ) { - dataPriv.remove( elem, name ); - } -} ); - -jQuery.fn.extend( { - data: function( key, value ) { - var i, name, data, - elem = this[ 0 ], - attrs = elem && elem.attributes; - - // Gets all values - if ( key === undefined ) { - if ( this.length ) { - data = dataUser.get( elem ); - - if ( elem.nodeType === 1 && !dataPriv.get( elem, "hasDataAttrs" ) ) { - i = attrs.length; - while ( i-- ) { - - // Support: IE 11 only - // The attrs elements can be null (#14894) - if ( attrs[ i ] ) { - name = attrs[ i ].name; - if ( name.indexOf( "data-" ) === 0 ) { - name = camelCase( name.slice( 5 ) ); - dataAttr( elem, name, data[ name ] ); - } - } - } - dataPriv.set( elem, "hasDataAttrs", true ); - } - } - - return data; - } - - // Sets multiple values - if ( typeof key === "object" ) { - return this.each( function() { - dataUser.set( this, key ); - } ); - } - - return access( this, function( value ) { - var data; - - // The calling jQuery object (element matches) is not empty - // (and therefore has an element appears at this[ 0 ]) and the - // `value` parameter was not undefined. An empty jQuery object - // will result in `undefined` for elem = this[ 0 ] which will - // throw an exception if an attempt to read a data cache is made. - if ( elem && value === undefined ) { - - // Attempt to get data from the cache - // The key will always be camelCased in Data - data = dataUser.get( elem, key ); - if ( data !== undefined ) { - return data; - } - - // Attempt to "discover" the data in - // HTML5 custom data-* attrs - data = dataAttr( elem, key ); - if ( data !== undefined ) { - return data; - } - - // We tried really hard, but the data doesn't exist. - return; - } - - // Set the data... - this.each( function() { - - // We always store the camelCased key - dataUser.set( this, key, value ); - } ); - }, null, value, arguments.length > 1, null, true ); - }, - - removeData: function( key ) { - return this.each( function() { - dataUser.remove( this, key ); - } ); - } -} ); - - -jQuery.extend( { - queue: function( elem, type, data ) { - var queue; - - if ( elem ) { - type = ( type || "fx" ) + "queue"; - queue = dataPriv.get( elem, type ); - - // Speed up dequeue by getting out quickly if this is just a lookup - if ( data ) { - if ( !queue || Array.isArray( data ) ) { - queue = dataPriv.access( elem, type, jQuery.makeArray( data ) ); - } else { - queue.push( data ); - } - } - return queue || []; - } - }, - - dequeue: function( elem, type ) { - type = type || "fx"; - - var queue = jQuery.queue( elem, type ), - startLength = queue.length, - fn = queue.shift(), - hooks = jQuery._queueHooks( elem, type ), - next = function() { - jQuery.dequeue( elem, type ); - }; - - // If the fx queue is dequeued, always remove the progress sentinel - if ( fn === "inprogress" ) { - fn = queue.shift(); - startLength--; - } - - if ( fn ) { - - // Add a progress sentinel to prevent the fx queue from being - // automatically dequeued - if ( type === "fx" ) { - queue.unshift( "inprogress" ); - } - - // Clear up the last queue stop function - delete hooks.stop; - fn.call( elem, next, hooks ); - } - - if ( !startLength && hooks ) { - hooks.empty.fire(); - } - }, - - // Not public - generate a queueHooks object, or return the current one - _queueHooks: function( elem, type ) { - var key = type + "queueHooks"; - return dataPriv.get( elem, key ) || dataPriv.access( elem, key, { - empty: jQuery.Callbacks( "once memory" ).add( function() { - dataPriv.remove( elem, [ type + "queue", key ] ); - } ) - } ); - } -} ); - -jQuery.fn.extend( { - queue: function( type, data ) { - var setter = 2; - - if ( typeof type !== "string" ) { - data = type; - type = "fx"; - setter--; - } - - if ( arguments.length < setter ) { - return jQuery.queue( this[ 0 ], type ); - } - - return data === undefined ? - this : - this.each( function() { - var queue = jQuery.queue( this, type, data ); - - // Ensure a hooks for this queue - jQuery._queueHooks( this, type ); - - if ( type === "fx" && queue[ 0 ] !== "inprogress" ) { - jQuery.dequeue( this, type ); - } - } ); - }, - dequeue: function( type ) { - return this.each( function() { - jQuery.dequeue( this, type ); - } ); - }, - clearQueue: function( type ) { - return this.queue( type || "fx", [] ); - }, - - // Get a promise resolved when queues of a certain type - // are emptied (fx is the type by default) - promise: function( type, obj ) { - var tmp, - count = 1, - defer = jQuery.Deferred(), - elements = this, - i = this.length, - resolve = function() { - if ( !( --count ) ) { - defer.resolveWith( elements, [ elements ] ); - } - }; - - if ( typeof type !== "string" ) { - obj = type; - type = undefined; - } - type = type || "fx"; - - while ( i-- ) { - tmp = dataPriv.get( elements[ i ], type + "queueHooks" ); - if ( tmp && tmp.empty ) { - count++; - tmp.empty.add( resolve ); - } - } - resolve(); - return defer.promise( obj ); - } -} ); -var pnum = ( /[+-]?(?:\d*\.|)\d+(?:[eE][+-]?\d+|)/ ).source; - -var rcssNum = new RegExp( "^(?:([+-])=|)(" + pnum + ")([a-z%]*)$", "i" ); - - -var cssExpand = [ "Top", "Right", "Bottom", "Left" ]; - -var documentElement = document.documentElement; - - - - var isAttached = function( elem ) { - return jQuery.contains( elem.ownerDocument, elem ); - }, - composed = { composed: true }; - - // Support: IE 9 - 11+, Edge 12 - 18+, iOS 10.0 - 10.2 only - // Check attachment across shadow DOM boundaries when possible (gh-3504) - // Support: iOS 10.0-10.2 only - // Early iOS 10 versions support `attachShadow` but not `getRootNode`, - // leading to errors. We need to check for `getRootNode`. - if ( documentElement.getRootNode ) { - isAttached = function( elem ) { - return jQuery.contains( elem.ownerDocument, elem ) || - elem.getRootNode( composed ) === elem.ownerDocument; - }; - } -var isHiddenWithinTree = function( elem, el ) { - - // isHiddenWithinTree might be called from jQuery#filter function; - // in that case, element will be second argument - elem = el || elem; - - // Inline style trumps all - return elem.style.display === "none" || - elem.style.display === "" && - - // Otherwise, check computed style - // Support: Firefox <=43 - 45 - // Disconnected elements can have computed display: none, so first confirm that elem is - // in the document. - isAttached( elem ) && - - jQuery.css( elem, "display" ) === "none"; - }; - -var swap = function( elem, options, callback, args ) { - var ret, name, - old = {}; - - // Remember the old values, and insert the new ones - for ( name in options ) { - old[ name ] = elem.style[ name ]; - elem.style[ name ] = options[ name ]; - } - - ret = callback.apply( elem, args || [] ); - - // Revert the old values - for ( name in options ) { - elem.style[ name ] = old[ name ]; - } - - return ret; -}; - - - - -function adjustCSS( elem, prop, valueParts, tween ) { - var adjusted, scale, - maxIterations = 20, - currentValue = tween ? - function() { - return tween.cur(); - } : - function() { - return jQuery.css( elem, prop, "" ); - }, - initial = currentValue(), - unit = valueParts && valueParts[ 3 ] || ( jQuery.cssNumber[ prop ] ? "" : "px" ), - - // Starting value computation is required for potential unit mismatches - initialInUnit = elem.nodeType && - ( jQuery.cssNumber[ prop ] || unit !== "px" && +initial ) && - rcssNum.exec( jQuery.css( elem, prop ) ); - - if ( initialInUnit && initialInUnit[ 3 ] !== unit ) { - - // Support: Firefox <=54 - // Halve the iteration target value to prevent interference from CSS upper bounds (gh-2144) - initial = initial / 2; - - // Trust units reported by jQuery.css - unit = unit || initialInUnit[ 3 ]; - - // Iteratively approximate from a nonzero starting point - initialInUnit = +initial || 1; - - while ( maxIterations-- ) { - - // Evaluate and update our best guess (doubling guesses that zero out). - // Finish if the scale equals or crosses 1 (making the old*new product non-positive). - jQuery.style( elem, prop, initialInUnit + unit ); - if ( ( 1 - scale ) * ( 1 - ( scale = currentValue() / initial || 0.5 ) ) <= 0 ) { - maxIterations = 0; - } - initialInUnit = initialInUnit / scale; - - } - - initialInUnit = initialInUnit * 2; - jQuery.style( elem, prop, initialInUnit + unit ); - - // Make sure we update the tween properties later on - valueParts = valueParts || []; - } - - if ( valueParts ) { - initialInUnit = +initialInUnit || +initial || 0; - - // Apply relative offset (+=/-=) if specified - adjusted = valueParts[ 1 ] ? - initialInUnit + ( valueParts[ 1 ] + 1 ) * valueParts[ 2 ] : - +valueParts[ 2 ]; - if ( tween ) { - tween.unit = unit; - tween.start = initialInUnit; - tween.end = adjusted; - } - } - return adjusted; -} - - -var defaultDisplayMap = {}; - -function getDefaultDisplay( elem ) { - var temp, - doc = elem.ownerDocument, - nodeName = elem.nodeName, - display = defaultDisplayMap[ nodeName ]; - - if ( display ) { - return display; - } - - temp = doc.body.appendChild( doc.createElement( nodeName ) ); - display = jQuery.css( temp, "display" ); - - temp.parentNode.removeChild( temp ); - - if ( display === "none" ) { - display = "block"; - } - defaultDisplayMap[ nodeName ] = display; - - return display; -} - -function showHide( elements, show ) { - var display, elem, - values = [], - index = 0, - length = elements.length; - - // Determine new display value for elements that need to change - for ( ; index < length; index++ ) { - elem = elements[ index ]; - if ( !elem.style ) { - continue; - } - - display = elem.style.display; - if ( show ) { - - // Since we force visibility upon cascade-hidden elements, an immediate (and slow) - // check is required in this first loop unless we have a nonempty display value (either - // inline or about-to-be-restored) - if ( display === "none" ) { - values[ index ] = dataPriv.get( elem, "display" ) || null; - if ( !values[ index ] ) { - elem.style.display = ""; - } - } - if ( elem.style.display === "" && isHiddenWithinTree( elem ) ) { - values[ index ] = getDefaultDisplay( elem ); - } - } else { - if ( display !== "none" ) { - values[ index ] = "none"; - - // Remember what we're overwriting - dataPriv.set( elem, "display", display ); - } - } - } - - // Set the display of the elements in a second loop to avoid constant reflow - for ( index = 0; index < length; index++ ) { - if ( values[ index ] != null ) { - elements[ index ].style.display = values[ index ]; - } - } - - return elements; -} - -jQuery.fn.extend( { - show: function() { - return showHide( this, true ); - }, - hide: function() { - return showHide( this ); - }, - toggle: function( state ) { - if ( typeof state === "boolean" ) { - return state ? this.show() : this.hide(); - } - - return this.each( function() { - if ( isHiddenWithinTree( this ) ) { - jQuery( this ).show(); - } else { - jQuery( this ).hide(); - } - } ); - } -} ); -var rcheckableType = ( /^(?:checkbox|radio)$/i ); - -var rtagName = ( /<([a-z][^\/\0>\x20\t\r\n\f]*)/i ); - -var rscriptType = ( /^$|^module$|\/(?:java|ecma)script/i ); - - - -// We have to close these tags to support XHTML (#13200) -var wrapMap = { - - // Support: IE <=9 only - option: [ 1, "" ], - - // XHTML parsers do not magically insert elements in the - // same way that tag soup parsers do. So we cannot shorten - // this by omitting or other required elements. - thead: [ 1, "", "
" ], - col: [ 2, "", "
" ], - tr: [ 2, "", "
" ], - td: [ 3, "", "
" ], - - _default: [ 0, "", "" ] -}; - -// Support: IE <=9 only -wrapMap.optgroup = wrapMap.option; - -wrapMap.tbody = wrapMap.tfoot = wrapMap.colgroup = wrapMap.caption = wrapMap.thead; -wrapMap.th = wrapMap.td; - - -function getAll( context, tag ) { - - // Support: IE <=9 - 11 only - // Use typeof to avoid zero-argument method invocation on host objects (#15151) - var ret; - - if ( typeof context.getElementsByTagName !== "undefined" ) { - ret = context.getElementsByTagName( tag || "*" ); - - } else if ( typeof context.querySelectorAll !== "undefined" ) { - ret = context.querySelectorAll( tag || "*" ); - - } else { - ret = []; - } - - if ( tag === undefined || tag && nodeName( context, tag ) ) { - return jQuery.merge( [ context ], ret ); - } - - return ret; -} - - -// Mark scripts as having already been evaluated -function setGlobalEval( elems, refElements ) { - var i = 0, - l = elems.length; - - for ( ; i < l; i++ ) { - dataPriv.set( - elems[ i ], - "globalEval", - !refElements || dataPriv.get( refElements[ i ], "globalEval" ) - ); - } -} - - -var rhtml = /<|&#?\w+;/; - -function buildFragment( elems, context, scripts, selection, ignored ) { - var elem, tmp, tag, wrap, attached, j, - fragment = context.createDocumentFragment(), - nodes = [], - i = 0, - l = elems.length; - - for ( ; i < l; i++ ) { - elem = elems[ i ]; - - if ( elem || elem === 0 ) { - - // Add nodes directly - if ( toType( elem ) === "object" ) { - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - jQuery.merge( nodes, elem.nodeType ? [ elem ] : elem ); - - // Convert non-html into a text node - } else if ( !rhtml.test( elem ) ) { - nodes.push( context.createTextNode( elem ) ); - - // Convert html into DOM nodes - } else { - tmp = tmp || fragment.appendChild( context.createElement( "div" ) ); - - // Deserialize a standard representation - tag = ( rtagName.exec( elem ) || [ "", "" ] )[ 1 ].toLowerCase(); - wrap = wrapMap[ tag ] || wrapMap._default; - tmp.innerHTML = wrap[ 1 ] + jQuery.htmlPrefilter( elem ) + wrap[ 2 ]; - - // Descend through wrappers to the right content - j = wrap[ 0 ]; - while ( j-- ) { - tmp = tmp.lastChild; - } - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - jQuery.merge( nodes, tmp.childNodes ); - - // Remember the top-level container - tmp = fragment.firstChild; - - // Ensure the created nodes are orphaned (#12392) - tmp.textContent = ""; - } - } - } - - // Remove wrapper from fragment - fragment.textContent = ""; - - i = 0; - while ( ( elem = nodes[ i++ ] ) ) { - - // Skip elements already in the context collection (trac-4087) - if ( selection && jQuery.inArray( elem, selection ) > -1 ) { - if ( ignored ) { - ignored.push( elem ); - } - continue; - } - - attached = isAttached( elem ); - - // Append to fragment - tmp = getAll( fragment.appendChild( elem ), "script" ); - - // Preserve script evaluation history - if ( attached ) { - setGlobalEval( tmp ); - } - - // Capture executables - if ( scripts ) { - j = 0; - while ( ( elem = tmp[ j++ ] ) ) { - if ( rscriptType.test( elem.type || "" ) ) { - scripts.push( elem ); - } - } - } - } - - return fragment; -} - - -( function() { - var fragment = document.createDocumentFragment(), - div = fragment.appendChild( document.createElement( "div" ) ), - input = document.createElement( "input" ); - - // Support: Android 4.0 - 4.3 only - // Check state lost if the name is set (#11217) - // Support: Windows Web Apps (WWA) - // `name` and `type` must use .setAttribute for WWA (#14901) - input.setAttribute( "type", "radio" ); - input.setAttribute( "checked", "checked" ); - input.setAttribute( "name", "t" ); - - div.appendChild( input ); - - // Support: Android <=4.1 only - // Older WebKit doesn't clone checked state correctly in fragments - support.checkClone = div.cloneNode( true ).cloneNode( true ).lastChild.checked; - - // Support: IE <=11 only - // Make sure textarea (and checkbox) defaultValue is properly cloned - div.innerHTML = ""; - support.noCloneChecked = !!div.cloneNode( true ).lastChild.defaultValue; -} )(); - - -var - rkeyEvent = /^key/, - rmouseEvent = /^(?:mouse|pointer|contextmenu|drag|drop)|click/, - rtypenamespace = /^([^.]*)(?:\.(.+)|)/; - -function returnTrue() { - return true; -} - -function returnFalse() { - return false; -} - -// Support: IE <=9 - 11+ -// focus() and blur() are asynchronous, except when they are no-op. -// So expect focus to be synchronous when the element is already active, -// and blur to be synchronous when the element is not already active. -// (focus and blur are always synchronous in other supported browsers, -// this just defines when we can count on it). -function expectSync( elem, type ) { - return ( elem === safeActiveElement() ) === ( type === "focus" ); -} - -// Support: IE <=9 only -// Accessing document.activeElement can throw unexpectedly -// https://bugs.jquery.com/ticket/13393 -function safeActiveElement() { - try { - return document.activeElement; - } catch ( err ) { } -} - -function on( elem, types, selector, data, fn, one ) { - var origFn, type; - - // Types can be a map of types/handlers - if ( typeof types === "object" ) { - - // ( types-Object, selector, data ) - if ( typeof selector !== "string" ) { - - // ( types-Object, data ) - data = data || selector; - selector = undefined; - } - for ( type in types ) { - on( elem, type, selector, data, types[ type ], one ); - } - return elem; - } - - if ( data == null && fn == null ) { - - // ( types, fn ) - fn = selector; - data = selector = undefined; - } else if ( fn == null ) { - if ( typeof selector === "string" ) { - - // ( types, selector, fn ) - fn = data; - data = undefined; - } else { - - // ( types, data, fn ) - fn = data; - data = selector; - selector = undefined; - } - } - if ( fn === false ) { - fn = returnFalse; - } else if ( !fn ) { - return elem; - } - - if ( one === 1 ) { - origFn = fn; - fn = function( event ) { - - // Can use an empty set, since event contains the info - jQuery().off( event ); - return origFn.apply( this, arguments ); - }; - - // Use same guid so caller can remove using origFn - fn.guid = origFn.guid || ( origFn.guid = jQuery.guid++ ); - } - return elem.each( function() { - jQuery.event.add( this, types, fn, data, selector ); - } ); -} - -/* - * Helper functions for managing events -- not part of the public interface. - * Props to Dean Edwards' addEvent library for many of the ideas. - */ -jQuery.event = { - - global: {}, - - add: function( elem, types, handler, data, selector ) { - - var handleObjIn, eventHandle, tmp, - events, t, handleObj, - special, handlers, type, namespaces, origType, - elemData = dataPriv.get( elem ); - - // Don't attach events to noData or text/comment nodes (but allow plain objects) - if ( !elemData ) { - return; - } - - // Caller can pass in an object of custom data in lieu of the handler - if ( handler.handler ) { - handleObjIn = handler; - handler = handleObjIn.handler; - selector = handleObjIn.selector; - } - - // Ensure that invalid selectors throw exceptions at attach time - // Evaluate against documentElement in case elem is a non-element node (e.g., document) - if ( selector ) { - jQuery.find.matchesSelector( documentElement, selector ); - } - - // Make sure that the handler has a unique ID, used to find/remove it later - if ( !handler.guid ) { - handler.guid = jQuery.guid++; - } - - // Init the element's event structure and main handler, if this is the first - if ( !( events = elemData.events ) ) { - events = elemData.events = {}; - } - if ( !( eventHandle = elemData.handle ) ) { - eventHandle = elemData.handle = function( e ) { - - // Discard the second event of a jQuery.event.trigger() and - // when an event is called after a page has unloaded - return typeof jQuery !== "undefined" && jQuery.event.triggered !== e.type ? - jQuery.event.dispatch.apply( elem, arguments ) : undefined; - }; - } - - // Handle multiple events separated by a space - types = ( types || "" ).match( rnothtmlwhite ) || [ "" ]; - t = types.length; - while ( t-- ) { - tmp = rtypenamespace.exec( types[ t ] ) || []; - type = origType = tmp[ 1 ]; - namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort(); - - // There *must* be a type, no attaching namespace-only handlers - if ( !type ) { - continue; - } - - // If event changes its type, use the special event handlers for the changed type - special = jQuery.event.special[ type ] || {}; - - // If selector defined, determine special event api type, otherwise given type - type = ( selector ? special.delegateType : special.bindType ) || type; - - // Update special based on newly reset type - special = jQuery.event.special[ type ] || {}; - - // handleObj is passed to all event handlers - handleObj = jQuery.extend( { - type: type, - origType: origType, - data: data, - handler: handler, - guid: handler.guid, - selector: selector, - needsContext: selector && jQuery.expr.match.needsContext.test( selector ), - namespace: namespaces.join( "." ) - }, handleObjIn ); - - // Init the event handler queue if we're the first - if ( !( handlers = events[ type ] ) ) { - handlers = events[ type ] = []; - handlers.delegateCount = 0; - - // Only use addEventListener if the special events handler returns false - if ( !special.setup || - special.setup.call( elem, data, namespaces, eventHandle ) === false ) { - - if ( elem.addEventListener ) { - elem.addEventListener( type, eventHandle ); - } - } - } - - if ( special.add ) { - special.add.call( elem, handleObj ); - - if ( !handleObj.handler.guid ) { - handleObj.handler.guid = handler.guid; - } - } - - // Add to the element's handler list, delegates in front - if ( selector ) { - handlers.splice( handlers.delegateCount++, 0, handleObj ); - } else { - handlers.push( handleObj ); - } - - // Keep track of which events have ever been used, for event optimization - jQuery.event.global[ type ] = true; - } - - }, - - // Detach an event or set of events from an element - remove: function( elem, types, handler, selector, mappedTypes ) { - - var j, origCount, tmp, - events, t, handleObj, - special, handlers, type, namespaces, origType, - elemData = dataPriv.hasData( elem ) && dataPriv.get( elem ); - - if ( !elemData || !( events = elemData.events ) ) { - return; - } - - // Once for each type.namespace in types; type may be omitted - types = ( types || "" ).match( rnothtmlwhite ) || [ "" ]; - t = types.length; - while ( t-- ) { - tmp = rtypenamespace.exec( types[ t ] ) || []; - type = origType = tmp[ 1 ]; - namespaces = ( tmp[ 2 ] || "" ).split( "." ).sort(); - - // Unbind all events (on this namespace, if provided) for the element - if ( !type ) { - for ( type in events ) { - jQuery.event.remove( elem, type + types[ t ], handler, selector, true ); - } - continue; - } - - special = jQuery.event.special[ type ] || {}; - type = ( selector ? special.delegateType : special.bindType ) || type; - handlers = events[ type ] || []; - tmp = tmp[ 2 ] && - new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" ); - - // Remove matching events - origCount = j = handlers.length; - while ( j-- ) { - handleObj = handlers[ j ]; - - if ( ( mappedTypes || origType === handleObj.origType ) && - ( !handler || handler.guid === handleObj.guid ) && - ( !tmp || tmp.test( handleObj.namespace ) ) && - ( !selector || selector === handleObj.selector || - selector === "**" && handleObj.selector ) ) { - handlers.splice( j, 1 ); - - if ( handleObj.selector ) { - handlers.delegateCount--; - } - if ( special.remove ) { - special.remove.call( elem, handleObj ); - } - } - } - - // Remove generic event handler if we removed something and no more handlers exist - // (avoids potential for endless recursion during removal of special event handlers) - if ( origCount && !handlers.length ) { - if ( !special.teardown || - special.teardown.call( elem, namespaces, elemData.handle ) === false ) { - - jQuery.removeEvent( elem, type, elemData.handle ); - } - - delete events[ type ]; - } - } - - // Remove data and the expando if it's no longer used - if ( jQuery.isEmptyObject( events ) ) { - dataPriv.remove( elem, "handle events" ); - } - }, - - dispatch: function( nativeEvent ) { - - // Make a writable jQuery.Event from the native event object - var event = jQuery.event.fix( nativeEvent ); - - var i, j, ret, matched, handleObj, handlerQueue, - args = new Array( arguments.length ), - handlers = ( dataPriv.get( this, "events" ) || {} )[ event.type ] || [], - special = jQuery.event.special[ event.type ] || {}; - - // Use the fix-ed jQuery.Event rather than the (read-only) native event - args[ 0 ] = event; - - for ( i = 1; i < arguments.length; i++ ) { - args[ i ] = arguments[ i ]; - } - - event.delegateTarget = this; - - // Call the preDispatch hook for the mapped type, and let it bail if desired - if ( special.preDispatch && special.preDispatch.call( this, event ) === false ) { - return; - } - - // Determine handlers - handlerQueue = jQuery.event.handlers.call( this, event, handlers ); - - // Run delegates first; they may want to stop propagation beneath us - i = 0; - while ( ( matched = handlerQueue[ i++ ] ) && !event.isPropagationStopped() ) { - event.currentTarget = matched.elem; - - j = 0; - while ( ( handleObj = matched.handlers[ j++ ] ) && - !event.isImmediatePropagationStopped() ) { - - // If the event is namespaced, then each handler is only invoked if it is - // specially universal or its namespaces are a superset of the event's. - if ( !event.rnamespace || handleObj.namespace === false || - event.rnamespace.test( handleObj.namespace ) ) { - - event.handleObj = handleObj; - event.data = handleObj.data; - - ret = ( ( jQuery.event.special[ handleObj.origType ] || {} ).handle || - handleObj.handler ).apply( matched.elem, args ); - - if ( ret !== undefined ) { - if ( ( event.result = ret ) === false ) { - event.preventDefault(); - event.stopPropagation(); - } - } - } - } - } - - // Call the postDispatch hook for the mapped type - if ( special.postDispatch ) { - special.postDispatch.call( this, event ); - } - - return event.result; - }, - - handlers: function( event, handlers ) { - var i, handleObj, sel, matchedHandlers, matchedSelectors, - handlerQueue = [], - delegateCount = handlers.delegateCount, - cur = event.target; - - // Find delegate handlers - if ( delegateCount && - - // Support: IE <=9 - // Black-hole SVG instance trees (trac-13180) - cur.nodeType && - - // Support: Firefox <=42 - // Suppress spec-violating clicks indicating a non-primary pointer button (trac-3861) - // https://www.w3.org/TR/DOM-Level-3-Events/#event-type-click - // Support: IE 11 only - // ...but not arrow key "clicks" of radio inputs, which can have `button` -1 (gh-2343) - !( event.type === "click" && event.button >= 1 ) ) { - - for ( ; cur !== this; cur = cur.parentNode || this ) { - - // Don't check non-elements (#13208) - // Don't process clicks on disabled elements (#6911, #8165, #11382, #11764) - if ( cur.nodeType === 1 && !( event.type === "click" && cur.disabled === true ) ) { - matchedHandlers = []; - matchedSelectors = {}; - for ( i = 0; i < delegateCount; i++ ) { - handleObj = handlers[ i ]; - - // Don't conflict with Object.prototype properties (#13203) - sel = handleObj.selector + " "; - - if ( matchedSelectors[ sel ] === undefined ) { - matchedSelectors[ sel ] = handleObj.needsContext ? - jQuery( sel, this ).index( cur ) > -1 : - jQuery.find( sel, this, null, [ cur ] ).length; - } - if ( matchedSelectors[ sel ] ) { - matchedHandlers.push( handleObj ); - } - } - if ( matchedHandlers.length ) { - handlerQueue.push( { elem: cur, handlers: matchedHandlers } ); - } - } - } - } - - // Add the remaining (directly-bound) handlers - cur = this; - if ( delegateCount < handlers.length ) { - handlerQueue.push( { elem: cur, handlers: handlers.slice( delegateCount ) } ); - } - - return handlerQueue; - }, - - addProp: function( name, hook ) { - Object.defineProperty( jQuery.Event.prototype, name, { - enumerable: true, - configurable: true, - - get: isFunction( hook ) ? - function() { - if ( this.originalEvent ) { - return hook( this.originalEvent ); - } - } : - function() { - if ( this.originalEvent ) { - return this.originalEvent[ name ]; - } - }, - - set: function( value ) { - Object.defineProperty( this, name, { - enumerable: true, - configurable: true, - writable: true, - value: value - } ); - } - } ); - }, - - fix: function( originalEvent ) { - return originalEvent[ jQuery.expando ] ? - originalEvent : - new jQuery.Event( originalEvent ); - }, - - special: { - load: { - - // Prevent triggered image.load events from bubbling to window.load - noBubble: true - }, - click: { - - // Utilize native event to ensure correct state for checkable inputs - setup: function( data ) { - - // For mutual compressibility with _default, replace `this` access with a local var. - // `|| data` is dead code meant only to preserve the variable through minification. - var el = this || data; - - // Claim the first handler - if ( rcheckableType.test( el.type ) && - el.click && nodeName( el, "input" ) ) { - - // dataPriv.set( el, "click", ... ) - leverageNative( el, "click", returnTrue ); - } - - // Return false to allow normal processing in the caller - return false; - }, - trigger: function( data ) { - - // For mutual compressibility with _default, replace `this` access with a local var. - // `|| data` is dead code meant only to preserve the variable through minification. - var el = this || data; - - // Force setup before triggering a click - if ( rcheckableType.test( el.type ) && - el.click && nodeName( el, "input" ) ) { - - leverageNative( el, "click" ); - } - - // Return non-false to allow normal event-path propagation - return true; - }, - - // For cross-browser consistency, suppress native .click() on links - // Also prevent it if we're currently inside a leveraged native-event stack - _default: function( event ) { - var target = event.target; - return rcheckableType.test( target.type ) && - target.click && nodeName( target, "input" ) && - dataPriv.get( target, "click" ) || - nodeName( target, "a" ); - } - }, - - beforeunload: { - postDispatch: function( event ) { - - // Support: Firefox 20+ - // Firefox doesn't alert if the returnValue field is not set. - if ( event.result !== undefined && event.originalEvent ) { - event.originalEvent.returnValue = event.result; - } - } - } - } -}; - -// Ensure the presence of an event listener that handles manually-triggered -// synthetic events by interrupting progress until reinvoked in response to -// *native* events that it fires directly, ensuring that state changes have -// already occurred before other listeners are invoked. -function leverageNative( el, type, expectSync ) { - - // Missing expectSync indicates a trigger call, which must force setup through jQuery.event.add - if ( !expectSync ) { - if ( dataPriv.get( el, type ) === undefined ) { - jQuery.event.add( el, type, returnTrue ); - } - return; - } - - // Register the controller as a special universal handler for all event namespaces - dataPriv.set( el, type, false ); - jQuery.event.add( el, type, { - namespace: false, - handler: function( event ) { - var notAsync, result, - saved = dataPriv.get( this, type ); - - if ( ( event.isTrigger & 1 ) && this[ type ] ) { - - // Interrupt processing of the outer synthetic .trigger()ed event - // Saved data should be false in such cases, but might be a leftover capture object - // from an async native handler (gh-4350) - if ( !saved.length ) { - - // Store arguments for use when handling the inner native event - // There will always be at least one argument (an event object), so this array - // will not be confused with a leftover capture object. - saved = slice.call( arguments ); - dataPriv.set( this, type, saved ); - - // Trigger the native event and capture its result - // Support: IE <=9 - 11+ - // focus() and blur() are asynchronous - notAsync = expectSync( this, type ); - this[ type ](); - result = dataPriv.get( this, type ); - if ( saved !== result || notAsync ) { - dataPriv.set( this, type, false ); - } else { - result = {}; - } - if ( saved !== result ) { - - // Cancel the outer synthetic event - event.stopImmediatePropagation(); - event.preventDefault(); - return result.value; - } - - // If this is an inner synthetic event for an event with a bubbling surrogate - // (focus or blur), assume that the surrogate already propagated from triggering the - // native event and prevent that from happening again here. - // This technically gets the ordering wrong w.r.t. to `.trigger()` (in which the - // bubbling surrogate propagates *after* the non-bubbling base), but that seems - // less bad than duplication. - } else if ( ( jQuery.event.special[ type ] || {} ).delegateType ) { - event.stopPropagation(); - } - - // If this is a native event triggered above, everything is now in order - // Fire an inner synthetic event with the original arguments - } else if ( saved.length ) { - - // ...and capture the result - dataPriv.set( this, type, { - value: jQuery.event.trigger( - - // Support: IE <=9 - 11+ - // Extend with the prototype to reset the above stopImmediatePropagation() - jQuery.extend( saved[ 0 ], jQuery.Event.prototype ), - saved.slice( 1 ), - this - ) - } ); - - // Abort handling of the native event - event.stopImmediatePropagation(); - } - } - } ); -} - -jQuery.removeEvent = function( elem, type, handle ) { - - // This "if" is needed for plain objects - if ( elem.removeEventListener ) { - elem.removeEventListener( type, handle ); - } -}; - -jQuery.Event = function( src, props ) { - - // Allow instantiation without the 'new' keyword - if ( !( this instanceof jQuery.Event ) ) { - return new jQuery.Event( src, props ); - } - - // Event object - if ( src && src.type ) { - this.originalEvent = src; - this.type = src.type; - - // Events bubbling up the document may have been marked as prevented - // by a handler lower down the tree; reflect the correct value. - this.isDefaultPrevented = src.defaultPrevented || - src.defaultPrevented === undefined && - - // Support: Android <=2.3 only - src.returnValue === false ? - returnTrue : - returnFalse; - - // Create target properties - // Support: Safari <=6 - 7 only - // Target should not be a text node (#504, #13143) - this.target = ( src.target && src.target.nodeType === 3 ) ? - src.target.parentNode : - src.target; - - this.currentTarget = src.currentTarget; - this.relatedTarget = src.relatedTarget; - - // Event type - } else { - this.type = src; - } - - // Put explicitly provided properties onto the event object - if ( props ) { - jQuery.extend( this, props ); - } - - // Create a timestamp if incoming event doesn't have one - this.timeStamp = src && src.timeStamp || Date.now(); - - // Mark it as fixed - this[ jQuery.expando ] = true; -}; - -// jQuery.Event is based on DOM3 Events as specified by the ECMAScript Language Binding -// https://www.w3.org/TR/2003/WD-DOM-Level-3-Events-20030331/ecma-script-binding.html -jQuery.Event.prototype = { - constructor: jQuery.Event, - isDefaultPrevented: returnFalse, - isPropagationStopped: returnFalse, - isImmediatePropagationStopped: returnFalse, - isSimulated: false, - - preventDefault: function() { - var e = this.originalEvent; - - this.isDefaultPrevented = returnTrue; - - if ( e && !this.isSimulated ) { - e.preventDefault(); - } - }, - stopPropagation: function() { - var e = this.originalEvent; - - this.isPropagationStopped = returnTrue; - - if ( e && !this.isSimulated ) { - e.stopPropagation(); - } - }, - stopImmediatePropagation: function() { - var e = this.originalEvent; - - this.isImmediatePropagationStopped = returnTrue; - - if ( e && !this.isSimulated ) { - e.stopImmediatePropagation(); - } - - this.stopPropagation(); - } -}; - -// Includes all common event props including KeyEvent and MouseEvent specific props -jQuery.each( { - altKey: true, - bubbles: true, - cancelable: true, - changedTouches: true, - ctrlKey: true, - detail: true, - eventPhase: true, - metaKey: true, - pageX: true, - pageY: true, - shiftKey: true, - view: true, - "char": true, - code: true, - charCode: true, - key: true, - keyCode: true, - button: true, - buttons: true, - clientX: true, - clientY: true, - offsetX: true, - offsetY: true, - pointerId: true, - pointerType: true, - screenX: true, - screenY: true, - targetTouches: true, - toElement: true, - touches: true, - - which: function( event ) { - var button = event.button; - - // Add which for key events - if ( event.which == null && rkeyEvent.test( event.type ) ) { - return event.charCode != null ? event.charCode : event.keyCode; - } - - // Add which for click: 1 === left; 2 === middle; 3 === right - if ( !event.which && button !== undefined && rmouseEvent.test( event.type ) ) { - if ( button & 1 ) { - return 1; - } - - if ( button & 2 ) { - return 3; - } - - if ( button & 4 ) { - return 2; - } - - return 0; - } - - return event.which; - } -}, jQuery.event.addProp ); - -jQuery.each( { focus: "focusin", blur: "focusout" }, function( type, delegateType ) { - jQuery.event.special[ type ] = { - - // Utilize native event if possible so blur/focus sequence is correct - setup: function() { - - // Claim the first handler - // dataPriv.set( this, "focus", ... ) - // dataPriv.set( this, "blur", ... ) - leverageNative( this, type, expectSync ); - - // Return false to allow normal processing in the caller - return false; - }, - trigger: function() { - - // Force setup before trigger - leverageNative( this, type ); - - // Return non-false to allow normal event-path propagation - return true; - }, - - delegateType: delegateType - }; -} ); - -// Create mouseenter/leave events using mouseover/out and event-time checks -// so that event delegation works in jQuery. -// Do the same for pointerenter/pointerleave and pointerover/pointerout -// -// Support: Safari 7 only -// Safari sends mouseenter too often; see: -// https://bugs.chromium.org/p/chromium/issues/detail?id=470258 -// for the description of the bug (it existed in older Chrome versions as well). -jQuery.each( { - mouseenter: "mouseover", - mouseleave: "mouseout", - pointerenter: "pointerover", - pointerleave: "pointerout" -}, function( orig, fix ) { - jQuery.event.special[ orig ] = { - delegateType: fix, - bindType: fix, - - handle: function( event ) { - var ret, - target = this, - related = event.relatedTarget, - handleObj = event.handleObj; - - // For mouseenter/leave call the handler if related is outside the target. - // NB: No relatedTarget if the mouse left/entered the browser window - if ( !related || ( related !== target && !jQuery.contains( target, related ) ) ) { - event.type = handleObj.origType; - ret = handleObj.handler.apply( this, arguments ); - event.type = fix; - } - return ret; - } - }; -} ); - -jQuery.fn.extend( { - - on: function( types, selector, data, fn ) { - return on( this, types, selector, data, fn ); - }, - one: function( types, selector, data, fn ) { - return on( this, types, selector, data, fn, 1 ); - }, - off: function( types, selector, fn ) { - var handleObj, type; - if ( types && types.preventDefault && types.handleObj ) { - - // ( event ) dispatched jQuery.Event - handleObj = types.handleObj; - jQuery( types.delegateTarget ).off( - handleObj.namespace ? - handleObj.origType + "." + handleObj.namespace : - handleObj.origType, - handleObj.selector, - handleObj.handler - ); - return this; - } - if ( typeof types === "object" ) { - - // ( types-object [, selector] ) - for ( type in types ) { - this.off( type, selector, types[ type ] ); - } - return this; - } - if ( selector === false || typeof selector === "function" ) { - - // ( types [, fn] ) - fn = selector; - selector = undefined; - } - if ( fn === false ) { - fn = returnFalse; - } - return this.each( function() { - jQuery.event.remove( this, types, fn, selector ); - } ); - } -} ); - - -var - - /* eslint-disable max-len */ - - // See https://github.com/eslint/eslint/issues/3229 - rxhtmlTag = /<(?!area|br|col|embed|hr|img|input|link|meta|param)(([a-z][^\/\0>\x20\t\r\n\f]*)[^>]*)\/>/gi, - - /* eslint-enable */ - - // Support: IE <=10 - 11, Edge 12 - 13 only - // In IE/Edge using regex groups here causes severe slowdowns. - // See https://connect.microsoft.com/IE/feedback/details/1736512/ - rnoInnerhtml = /\s*$/g; - -// Prefer a tbody over its parent table for containing new rows -function manipulationTarget( elem, content ) { - if ( nodeName( elem, "table" ) && - nodeName( content.nodeType !== 11 ? content : content.firstChild, "tr" ) ) { - - return jQuery( elem ).children( "tbody" )[ 0 ] || elem; - } - - return elem; -} - -// Replace/restore the type attribute of script elements for safe DOM manipulation -function disableScript( elem ) { - elem.type = ( elem.getAttribute( "type" ) !== null ) + "/" + elem.type; - return elem; -} -function restoreScript( elem ) { - if ( ( elem.type || "" ).slice( 0, 5 ) === "true/" ) { - elem.type = elem.type.slice( 5 ); - } else { - elem.removeAttribute( "type" ); - } - - return elem; -} - -function cloneCopyEvent( src, dest ) { - var i, l, type, pdataOld, pdataCur, udataOld, udataCur, events; - - if ( dest.nodeType !== 1 ) { - return; - } - - // 1. Copy private data: events, handlers, etc. - if ( dataPriv.hasData( src ) ) { - pdataOld = dataPriv.access( src ); - pdataCur = dataPriv.set( dest, pdataOld ); - events = pdataOld.events; - - if ( events ) { - delete pdataCur.handle; - pdataCur.events = {}; - - for ( type in events ) { - for ( i = 0, l = events[ type ].length; i < l; i++ ) { - jQuery.event.add( dest, type, events[ type ][ i ] ); - } - } - } - } - - // 2. Copy user data - if ( dataUser.hasData( src ) ) { - udataOld = dataUser.access( src ); - udataCur = jQuery.extend( {}, udataOld ); - - dataUser.set( dest, udataCur ); - } -} - -// Fix IE bugs, see support tests -function fixInput( src, dest ) { - var nodeName = dest.nodeName.toLowerCase(); - - // Fails to persist the checked state of a cloned checkbox or radio button. - if ( nodeName === "input" && rcheckableType.test( src.type ) ) { - dest.checked = src.checked; - - // Fails to return the selected option to the default selected state when cloning options - } else if ( nodeName === "input" || nodeName === "textarea" ) { - dest.defaultValue = src.defaultValue; - } -} - -function domManip( collection, args, callback, ignored ) { - - // Flatten any nested arrays - args = concat.apply( [], args ); - - var fragment, first, scripts, hasScripts, node, doc, - i = 0, - l = collection.length, - iNoClone = l - 1, - value = args[ 0 ], - valueIsFunction = isFunction( value ); - - // We can't cloneNode fragments that contain checked, in WebKit - if ( valueIsFunction || - ( l > 1 && typeof value === "string" && - !support.checkClone && rchecked.test( value ) ) ) { - return collection.each( function( index ) { - var self = collection.eq( index ); - if ( valueIsFunction ) { - args[ 0 ] = value.call( this, index, self.html() ); - } - domManip( self, args, callback, ignored ); - } ); - } - - if ( l ) { - fragment = buildFragment( args, collection[ 0 ].ownerDocument, false, collection, ignored ); - first = fragment.firstChild; - - if ( fragment.childNodes.length === 1 ) { - fragment = first; - } - - // Require either new content or an interest in ignored elements to invoke the callback - if ( first || ignored ) { - scripts = jQuery.map( getAll( fragment, "script" ), disableScript ); - hasScripts = scripts.length; - - // Use the original fragment for the last item - // instead of the first because it can end up - // being emptied incorrectly in certain situations (#8070). - for ( ; i < l; i++ ) { - node = fragment; - - if ( i !== iNoClone ) { - node = jQuery.clone( node, true, true ); - - // Keep references to cloned scripts for later restoration - if ( hasScripts ) { - - // Support: Android <=4.0 only, PhantomJS 1 only - // push.apply(_, arraylike) throws on ancient WebKit - jQuery.merge( scripts, getAll( node, "script" ) ); - } - } - - callback.call( collection[ i ], node, i ); - } - - if ( hasScripts ) { - doc = scripts[ scripts.length - 1 ].ownerDocument; - - // Reenable scripts - jQuery.map( scripts, restoreScript ); - - // Evaluate executable scripts on first document insertion - for ( i = 0; i < hasScripts; i++ ) { - node = scripts[ i ]; - if ( rscriptType.test( node.type || "" ) && - !dataPriv.access( node, "globalEval" ) && - jQuery.contains( doc, node ) ) { - - if ( node.src && ( node.type || "" ).toLowerCase() !== "module" ) { - - // Optional AJAX dependency, but won't run scripts if not present - if ( jQuery._evalUrl && !node.noModule ) { - jQuery._evalUrl( node.src, { - nonce: node.nonce || node.getAttribute( "nonce" ) - } ); - } - } else { - DOMEval( node.textContent.replace( rcleanScript, "" ), node, doc ); - } - } - } - } - } - } - - return collection; -} - -function remove( elem, selector, keepData ) { - var node, - nodes = selector ? jQuery.filter( selector, elem ) : elem, - i = 0; - - for ( ; ( node = nodes[ i ] ) != null; i++ ) { - if ( !keepData && node.nodeType === 1 ) { - jQuery.cleanData( getAll( node ) ); - } - - if ( node.parentNode ) { - if ( keepData && isAttached( node ) ) { - setGlobalEval( getAll( node, "script" ) ); - } - node.parentNode.removeChild( node ); - } - } - - return elem; -} - -jQuery.extend( { - htmlPrefilter: function( html ) { - return html.replace( rxhtmlTag, "<$1>" ); - }, - - clone: function( elem, dataAndEvents, deepDataAndEvents ) { - var i, l, srcElements, destElements, - clone = elem.cloneNode( true ), - inPage = isAttached( elem ); - - // Fix IE cloning issues - if ( !support.noCloneChecked && ( elem.nodeType === 1 || elem.nodeType === 11 ) && - !jQuery.isXMLDoc( elem ) ) { - - // We eschew Sizzle here for performance reasons: https://jsperf.com/getall-vs-sizzle/2 - destElements = getAll( clone ); - srcElements = getAll( elem ); - - for ( i = 0, l = srcElements.length; i < l; i++ ) { - fixInput( srcElements[ i ], destElements[ i ] ); - } - } - - // Copy the events from the original to the clone - if ( dataAndEvents ) { - if ( deepDataAndEvents ) { - srcElements = srcElements || getAll( elem ); - destElements = destElements || getAll( clone ); - - for ( i = 0, l = srcElements.length; i < l; i++ ) { - cloneCopyEvent( srcElements[ i ], destElements[ i ] ); - } - } else { - cloneCopyEvent( elem, clone ); - } - } - - // Preserve script evaluation history - destElements = getAll( clone, "script" ); - if ( destElements.length > 0 ) { - setGlobalEval( destElements, !inPage && getAll( elem, "script" ) ); - } - - // Return the cloned set - return clone; - }, - - cleanData: function( elems ) { - var data, elem, type, - special = jQuery.event.special, - i = 0; - - for ( ; ( elem = elems[ i ] ) !== undefined; i++ ) { - if ( acceptData( elem ) ) { - if ( ( data = elem[ dataPriv.expando ] ) ) { - if ( data.events ) { - for ( type in data.events ) { - if ( special[ type ] ) { - jQuery.event.remove( elem, type ); - - // This is a shortcut to avoid jQuery.event.remove's overhead - } else { - jQuery.removeEvent( elem, type, data.handle ); - } - } - } - - // Support: Chrome <=35 - 45+ - // Assign undefined instead of using delete, see Data#remove - elem[ dataPriv.expando ] = undefined; - } - if ( elem[ dataUser.expando ] ) { - - // Support: Chrome <=35 - 45+ - // Assign undefined instead of using delete, see Data#remove - elem[ dataUser.expando ] = undefined; - } - } - } - } -} ); - -jQuery.fn.extend( { - detach: function( selector ) { - return remove( this, selector, true ); - }, - - remove: function( selector ) { - return remove( this, selector ); - }, - - text: function( value ) { - return access( this, function( value ) { - return value === undefined ? - jQuery.text( this ) : - this.empty().each( function() { - if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { - this.textContent = value; - } - } ); - }, null, value, arguments.length ); - }, - - append: function() { - return domManip( this, arguments, function( elem ) { - if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { - var target = manipulationTarget( this, elem ); - target.appendChild( elem ); - } - } ); - }, - - prepend: function() { - return domManip( this, arguments, function( elem ) { - if ( this.nodeType === 1 || this.nodeType === 11 || this.nodeType === 9 ) { - var target = manipulationTarget( this, elem ); - target.insertBefore( elem, target.firstChild ); - } - } ); - }, - - before: function() { - return domManip( this, arguments, function( elem ) { - if ( this.parentNode ) { - this.parentNode.insertBefore( elem, this ); - } - } ); - }, - - after: function() { - return domManip( this, arguments, function( elem ) { - if ( this.parentNode ) { - this.parentNode.insertBefore( elem, this.nextSibling ); - } - } ); - }, - - empty: function() { - var elem, - i = 0; - - for ( ; ( elem = this[ i ] ) != null; i++ ) { - if ( elem.nodeType === 1 ) { - - // Prevent memory leaks - jQuery.cleanData( getAll( elem, false ) ); - - // Remove any remaining nodes - elem.textContent = ""; - } - } - - return this; - }, - - clone: function( dataAndEvents, deepDataAndEvents ) { - dataAndEvents = dataAndEvents == null ? false : dataAndEvents; - deepDataAndEvents = deepDataAndEvents == null ? dataAndEvents : deepDataAndEvents; - - return this.map( function() { - return jQuery.clone( this, dataAndEvents, deepDataAndEvents ); - } ); - }, - - html: function( value ) { - return access( this, function( value ) { - var elem = this[ 0 ] || {}, - i = 0, - l = this.length; - - if ( value === undefined && elem.nodeType === 1 ) { - return elem.innerHTML; - } - - // See if we can take a shortcut and just use innerHTML - if ( typeof value === "string" && !rnoInnerhtml.test( value ) && - !wrapMap[ ( rtagName.exec( value ) || [ "", "" ] )[ 1 ].toLowerCase() ] ) { - - value = jQuery.htmlPrefilter( value ); - - try { - for ( ; i < l; i++ ) { - elem = this[ i ] || {}; - - // Remove element nodes and prevent memory leaks - if ( elem.nodeType === 1 ) { - jQuery.cleanData( getAll( elem, false ) ); - elem.innerHTML = value; - } - } - - elem = 0; - - // If using innerHTML throws an exception, use the fallback method - } catch ( e ) {} - } - - if ( elem ) { - this.empty().append( value ); - } - }, null, value, arguments.length ); - }, - - replaceWith: function() { - var ignored = []; - - // Make the changes, replacing each non-ignored context element with the new content - return domManip( this, arguments, function( elem ) { - var parent = this.parentNode; - - if ( jQuery.inArray( this, ignored ) < 0 ) { - jQuery.cleanData( getAll( this ) ); - if ( parent ) { - parent.replaceChild( elem, this ); - } - } - - // Force callback invocation - }, ignored ); - } -} ); - -jQuery.each( { - appendTo: "append", - prependTo: "prepend", - insertBefore: "before", - insertAfter: "after", - replaceAll: "replaceWith" -}, function( name, original ) { - jQuery.fn[ name ] = function( selector ) { - var elems, - ret = [], - insert = jQuery( selector ), - last = insert.length - 1, - i = 0; - - for ( ; i <= last; i++ ) { - elems = i === last ? this : this.clone( true ); - jQuery( insert[ i ] )[ original ]( elems ); - - // Support: Android <=4.0 only, PhantomJS 1 only - // .get() because push.apply(_, arraylike) throws on ancient WebKit - push.apply( ret, elems.get() ); - } - - return this.pushStack( ret ); - }; -} ); -var rnumnonpx = new RegExp( "^(" + pnum + ")(?!px)[a-z%]+$", "i" ); - -var getStyles = function( elem ) { - - // Support: IE <=11 only, Firefox <=30 (#15098, #14150) - // IE throws on elements created in popups - // FF meanwhile throws on frame elements through "defaultView.getComputedStyle" - var view = elem.ownerDocument.defaultView; - - if ( !view || !view.opener ) { - view = window; - } - - return view.getComputedStyle( elem ); - }; - -var rboxStyle = new RegExp( cssExpand.join( "|" ), "i" ); - - - -( function() { - - // Executing both pixelPosition & boxSizingReliable tests require only one layout - // so they're executed at the same time to save the second computation. - function computeStyleTests() { - - // This is a singleton, we need to execute it only once - if ( !div ) { - return; - } - - container.style.cssText = "position:absolute;left:-11111px;width:60px;" + - "margin-top:1px;padding:0;border:0"; - div.style.cssText = - "position:relative;display:block;box-sizing:border-box;overflow:scroll;" + - "margin:auto;border:1px;padding:1px;" + - "width:60%;top:1%"; - documentElement.appendChild( container ).appendChild( div ); - - var divStyle = window.getComputedStyle( div ); - pixelPositionVal = divStyle.top !== "1%"; - - // Support: Android 4.0 - 4.3 only, Firefox <=3 - 44 - reliableMarginLeftVal = roundPixelMeasures( divStyle.marginLeft ) === 12; - - // Support: Android 4.0 - 4.3 only, Safari <=9.1 - 10.1, iOS <=7.0 - 9.3 - // Some styles come back with percentage values, even though they shouldn't - div.style.right = "60%"; - pixelBoxStylesVal = roundPixelMeasures( divStyle.right ) === 36; - - // Support: IE 9 - 11 only - // Detect misreporting of content dimensions for box-sizing:border-box elements - boxSizingReliableVal = roundPixelMeasures( divStyle.width ) === 36; - - // Support: IE 9 only - // Detect overflow:scroll screwiness (gh-3699) - // Support: Chrome <=64 - // Don't get tricked when zoom affects offsetWidth (gh-4029) - div.style.position = "absolute"; - scrollboxSizeVal = roundPixelMeasures( div.offsetWidth / 3 ) === 12; - - documentElement.removeChild( container ); - - // Nullify the div so it wouldn't be stored in the memory and - // it will also be a sign that checks already performed - div = null; - } - - function roundPixelMeasures( measure ) { - return Math.round( parseFloat( measure ) ); - } - - var pixelPositionVal, boxSizingReliableVal, scrollboxSizeVal, pixelBoxStylesVal, - reliableMarginLeftVal, - container = document.createElement( "div" ), - div = document.createElement( "div" ); - - // Finish early in limited (non-browser) environments - if ( !div.style ) { - return; - } - - // Support: IE <=9 - 11 only - // Style of cloned element affects source element cloned (#8908) - div.style.backgroundClip = "content-box"; - div.cloneNode( true ).style.backgroundClip = ""; - support.clearCloneStyle = div.style.backgroundClip === "content-box"; - - jQuery.extend( support, { - boxSizingReliable: function() { - computeStyleTests(); - return boxSizingReliableVal; - }, - pixelBoxStyles: function() { - computeStyleTests(); - return pixelBoxStylesVal; - }, - pixelPosition: function() { - computeStyleTests(); - return pixelPositionVal; - }, - reliableMarginLeft: function() { - computeStyleTests(); - return reliableMarginLeftVal; - }, - scrollboxSize: function() { - computeStyleTests(); - return scrollboxSizeVal; - } - } ); -} )(); - - -function curCSS( elem, name, computed ) { - var width, minWidth, maxWidth, ret, - - // Support: Firefox 51+ - // Retrieving style before computed somehow - // fixes an issue with getting wrong values - // on detached elements - style = elem.style; - - computed = computed || getStyles( elem ); - - // getPropertyValue is needed for: - // .css('filter') (IE 9 only, #12537) - // .css('--customProperty) (#3144) - if ( computed ) { - ret = computed.getPropertyValue( name ) || computed[ name ]; - - if ( ret === "" && !isAttached( elem ) ) { - ret = jQuery.style( elem, name ); - } - - // A tribute to the "awesome hack by Dean Edwards" - // Android Browser returns percentage for some values, - // but width seems to be reliably pixels. - // This is against the CSSOM draft spec: - // https://drafts.csswg.org/cssom/#resolved-values - if ( !support.pixelBoxStyles() && rnumnonpx.test( ret ) && rboxStyle.test( name ) ) { - - // Remember the original values - width = style.width; - minWidth = style.minWidth; - maxWidth = style.maxWidth; - - // Put in the new values to get a computed value out - style.minWidth = style.maxWidth = style.width = ret; - ret = computed.width; - - // Revert the changed values - style.width = width; - style.minWidth = minWidth; - style.maxWidth = maxWidth; - } - } - - return ret !== undefined ? - - // Support: IE <=9 - 11 only - // IE returns zIndex value as an integer. - ret + "" : - ret; -} - - -function addGetHookIf( conditionFn, hookFn ) { - - // Define the hook, we'll check on the first run if it's really needed. - return { - get: function() { - if ( conditionFn() ) { - - // Hook not needed (or it's not possible to use it due - // to missing dependency), remove it. - delete this.get; - return; - } - - // Hook needed; redefine it so that the support test is not executed again. - return ( this.get = hookFn ).apply( this, arguments ); - } - }; -} - - -var cssPrefixes = [ "Webkit", "Moz", "ms" ], - emptyStyle = document.createElement( "div" ).style, - vendorProps = {}; - -// Return a vendor-prefixed property or undefined -function vendorPropName( name ) { - - // Check for vendor prefixed names - var capName = name[ 0 ].toUpperCase() + name.slice( 1 ), - i = cssPrefixes.length; - - while ( i-- ) { - name = cssPrefixes[ i ] + capName; - if ( name in emptyStyle ) { - return name; - } - } -} - -// Return a potentially-mapped jQuery.cssProps or vendor prefixed property -function finalPropName( name ) { - var final = jQuery.cssProps[ name ] || vendorProps[ name ]; - - if ( final ) { - return final; - } - if ( name in emptyStyle ) { - return name; - } - return vendorProps[ name ] = vendorPropName( name ) || name; -} - - -var - - // Swappable if display is none or starts with table - // except "table", "table-cell", or "table-caption" - // See here for display values: https://developer.mozilla.org/en-US/docs/CSS/display - rdisplayswap = /^(none|table(?!-c[ea]).+)/, - rcustomProp = /^--/, - cssShow = { position: "absolute", visibility: "hidden", display: "block" }, - cssNormalTransform = { - letterSpacing: "0", - fontWeight: "400" - }; - -function setPositiveNumber( elem, value, subtract ) { - - // Any relative (+/-) values have already been - // normalized at this point - var matches = rcssNum.exec( value ); - return matches ? - - // Guard against undefined "subtract", e.g., when used as in cssHooks - Math.max( 0, matches[ 2 ] - ( subtract || 0 ) ) + ( matches[ 3 ] || "px" ) : - value; -} - -function boxModelAdjustment( elem, dimension, box, isBorderBox, styles, computedVal ) { - var i = dimension === "width" ? 1 : 0, - extra = 0, - delta = 0; - - // Adjustment may not be necessary - if ( box === ( isBorderBox ? "border" : "content" ) ) { - return 0; - } - - for ( ; i < 4; i += 2 ) { - - // Both box models exclude margin - if ( box === "margin" ) { - delta += jQuery.css( elem, box + cssExpand[ i ], true, styles ); - } - - // If we get here with a content-box, we're seeking "padding" or "border" or "margin" - if ( !isBorderBox ) { - - // Add padding - delta += jQuery.css( elem, "padding" + cssExpand[ i ], true, styles ); - - // For "border" or "margin", add border - if ( box !== "padding" ) { - delta += jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles ); - - // But still keep track of it otherwise - } else { - extra += jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles ); - } - - // If we get here with a border-box (content + padding + border), we're seeking "content" or - // "padding" or "margin" - } else { - - // For "content", subtract padding - if ( box === "content" ) { - delta -= jQuery.css( elem, "padding" + cssExpand[ i ], true, styles ); - } - - // For "content" or "padding", subtract border - if ( box !== "margin" ) { - delta -= jQuery.css( elem, "border" + cssExpand[ i ] + "Width", true, styles ); - } - } - } - - // Account for positive content-box scroll gutter when requested by providing computedVal - if ( !isBorderBox && computedVal >= 0 ) { - - // offsetWidth/offsetHeight is a rounded sum of content, padding, scroll gutter, and border - // Assuming integer scroll gutter, subtract the rest and round down - delta += Math.max( 0, Math.ceil( - elem[ "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ) ] - - computedVal - - delta - - extra - - 0.5 - - // If offsetWidth/offsetHeight is unknown, then we can't determine content-box scroll gutter - // Use an explicit zero to avoid NaN (gh-3964) - ) ) || 0; - } - - return delta; -} - -function getWidthOrHeight( elem, dimension, extra ) { - - // Start with computed style - var styles = getStyles( elem ), - - // To avoid forcing a reflow, only fetch boxSizing if we need it (gh-4322). - // Fake content-box until we know it's needed to know the true value. - boxSizingNeeded = !support.boxSizingReliable() || extra, - isBorderBox = boxSizingNeeded && - jQuery.css( elem, "boxSizing", false, styles ) === "border-box", - valueIsBorderBox = isBorderBox, - - val = curCSS( elem, dimension, styles ), - offsetProp = "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ); - - // Support: Firefox <=54 - // Return a confounding non-pixel value or feign ignorance, as appropriate. - if ( rnumnonpx.test( val ) ) { - if ( !extra ) { - return val; - } - val = "auto"; - } - - - // Fall back to offsetWidth/offsetHeight when value is "auto" - // This happens for inline elements with no explicit setting (gh-3571) - // Support: Android <=4.1 - 4.3 only - // Also use offsetWidth/offsetHeight for misreported inline dimensions (gh-3602) - // Support: IE 9-11 only - // Also use offsetWidth/offsetHeight for when box sizing is unreliable - // We use getClientRects() to check for hidden/disconnected. - // In those cases, the computed value can be trusted to be border-box - if ( ( !support.boxSizingReliable() && isBorderBox || - val === "auto" || - !parseFloat( val ) && jQuery.css( elem, "display", false, styles ) === "inline" ) && - elem.getClientRects().length ) { - - isBorderBox = jQuery.css( elem, "boxSizing", false, styles ) === "border-box"; - - // Where available, offsetWidth/offsetHeight approximate border box dimensions. - // Where not available (e.g., SVG), assume unreliable box-sizing and interpret the - // retrieved value as a content box dimension. - valueIsBorderBox = offsetProp in elem; - if ( valueIsBorderBox ) { - val = elem[ offsetProp ]; - } - } - - // Normalize "" and auto - val = parseFloat( val ) || 0; - - // Adjust for the element's box model - return ( val + - boxModelAdjustment( - elem, - dimension, - extra || ( isBorderBox ? "border" : "content" ), - valueIsBorderBox, - styles, - - // Provide the current computed size to request scroll gutter calculation (gh-3589) - val - ) - ) + "px"; -} - -jQuery.extend( { - - // Add in style property hooks for overriding the default - // behavior of getting and setting a style property - cssHooks: { - opacity: { - get: function( elem, computed ) { - if ( computed ) { - - // We should always get a number back from opacity - var ret = curCSS( elem, "opacity" ); - return ret === "" ? "1" : ret; - } - } - } - }, - - // Don't automatically add "px" to these possibly-unitless properties - cssNumber: { - "animationIterationCount": true, - "columnCount": true, - "fillOpacity": true, - "flexGrow": true, - "flexShrink": true, - "fontWeight": true, - "gridArea": true, - "gridColumn": true, - "gridColumnEnd": true, - "gridColumnStart": true, - "gridRow": true, - "gridRowEnd": true, - "gridRowStart": true, - "lineHeight": true, - "opacity": true, - "order": true, - "orphans": true, - "widows": true, - "zIndex": true, - "zoom": true - }, - - // Add in properties whose names you wish to fix before - // setting or getting the value - cssProps: {}, - - // Get and set the style property on a DOM Node - style: function( elem, name, value, extra ) { - - // Don't set styles on text and comment nodes - if ( !elem || elem.nodeType === 3 || elem.nodeType === 8 || !elem.style ) { - return; - } - - // Make sure that we're working with the right name - var ret, type, hooks, - origName = camelCase( name ), - isCustomProp = rcustomProp.test( name ), - style = elem.style; - - // Make sure that we're working with the right name. We don't - // want to query the value if it is a CSS custom property - // since they are user-defined. - if ( !isCustomProp ) { - name = finalPropName( origName ); - } - - // Gets hook for the prefixed version, then unprefixed version - hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ]; - - // Check if we're setting a value - if ( value !== undefined ) { - type = typeof value; - - // Convert "+=" or "-=" to relative numbers (#7345) - if ( type === "string" && ( ret = rcssNum.exec( value ) ) && ret[ 1 ] ) { - value = adjustCSS( elem, name, ret ); - - // Fixes bug #9237 - type = "number"; - } - - // Make sure that null and NaN values aren't set (#7116) - if ( value == null || value !== value ) { - return; - } - - // If a number was passed in, add the unit (except for certain CSS properties) - // The isCustomProp check can be removed in jQuery 4.0 when we only auto-append - // "px" to a few hardcoded values. - if ( type === "number" && !isCustomProp ) { - value += ret && ret[ 3 ] || ( jQuery.cssNumber[ origName ] ? "" : "px" ); - } - - // background-* props affect original clone's values - if ( !support.clearCloneStyle && value === "" && name.indexOf( "background" ) === 0 ) { - style[ name ] = "inherit"; - } - - // If a hook was provided, use that value, otherwise just set the specified value - if ( !hooks || !( "set" in hooks ) || - ( value = hooks.set( elem, value, extra ) ) !== undefined ) { - - if ( isCustomProp ) { - style.setProperty( name, value ); - } else { - style[ name ] = value; - } - } - - } else { - - // If a hook was provided get the non-computed value from there - if ( hooks && "get" in hooks && - ( ret = hooks.get( elem, false, extra ) ) !== undefined ) { - - return ret; - } - - // Otherwise just get the value from the style object - return style[ name ]; - } - }, - - css: function( elem, name, extra, styles ) { - var val, num, hooks, - origName = camelCase( name ), - isCustomProp = rcustomProp.test( name ); - - // Make sure that we're working with the right name. We don't - // want to modify the value if it is a CSS custom property - // since they are user-defined. - if ( !isCustomProp ) { - name = finalPropName( origName ); - } - - // Try prefixed name followed by the unprefixed name - hooks = jQuery.cssHooks[ name ] || jQuery.cssHooks[ origName ]; - - // If a hook was provided get the computed value from there - if ( hooks && "get" in hooks ) { - val = hooks.get( elem, true, extra ); - } - - // Otherwise, if a way to get the computed value exists, use that - if ( val === undefined ) { - val = curCSS( elem, name, styles ); - } - - // Convert "normal" to computed value - if ( val === "normal" && name in cssNormalTransform ) { - val = cssNormalTransform[ name ]; - } - - // Make numeric if forced or a qualifier was provided and val looks numeric - if ( extra === "" || extra ) { - num = parseFloat( val ); - return extra === true || isFinite( num ) ? num || 0 : val; - } - - return val; - } -} ); - -jQuery.each( [ "height", "width" ], function( i, dimension ) { - jQuery.cssHooks[ dimension ] = { - get: function( elem, computed, extra ) { - if ( computed ) { - - // Certain elements can have dimension info if we invisibly show them - // but it must have a current display style that would benefit - return rdisplayswap.test( jQuery.css( elem, "display" ) ) && - - // Support: Safari 8+ - // Table columns in Safari have non-zero offsetWidth & zero - // getBoundingClientRect().width unless display is changed. - // Support: IE <=11 only - // Running getBoundingClientRect on a disconnected node - // in IE throws an error. - ( !elem.getClientRects().length || !elem.getBoundingClientRect().width ) ? - swap( elem, cssShow, function() { - return getWidthOrHeight( elem, dimension, extra ); - } ) : - getWidthOrHeight( elem, dimension, extra ); - } - }, - - set: function( elem, value, extra ) { - var matches, - styles = getStyles( elem ), - - // Only read styles.position if the test has a chance to fail - // to avoid forcing a reflow. - scrollboxSizeBuggy = !support.scrollboxSize() && - styles.position === "absolute", - - // To avoid forcing a reflow, only fetch boxSizing if we need it (gh-3991) - boxSizingNeeded = scrollboxSizeBuggy || extra, - isBorderBox = boxSizingNeeded && - jQuery.css( elem, "boxSizing", false, styles ) === "border-box", - subtract = extra ? - boxModelAdjustment( - elem, - dimension, - extra, - isBorderBox, - styles - ) : - 0; - - // Account for unreliable border-box dimensions by comparing offset* to computed and - // faking a content-box to get border and padding (gh-3699) - if ( isBorderBox && scrollboxSizeBuggy ) { - subtract -= Math.ceil( - elem[ "offset" + dimension[ 0 ].toUpperCase() + dimension.slice( 1 ) ] - - parseFloat( styles[ dimension ] ) - - boxModelAdjustment( elem, dimension, "border", false, styles ) - - 0.5 - ); - } - - // Convert to pixels if value adjustment is needed - if ( subtract && ( matches = rcssNum.exec( value ) ) && - ( matches[ 3 ] || "px" ) !== "px" ) { - - elem.style[ dimension ] = value; - value = jQuery.css( elem, dimension ); - } - - return setPositiveNumber( elem, value, subtract ); - } - }; -} ); - -jQuery.cssHooks.marginLeft = addGetHookIf( support.reliableMarginLeft, - function( elem, computed ) { - if ( computed ) { - return ( parseFloat( curCSS( elem, "marginLeft" ) ) || - elem.getBoundingClientRect().left - - swap( elem, { marginLeft: 0 }, function() { - return elem.getBoundingClientRect().left; - } ) - ) + "px"; - } - } -); - -// These hooks are used by animate to expand properties -jQuery.each( { - margin: "", - padding: "", - border: "Width" -}, function( prefix, suffix ) { - jQuery.cssHooks[ prefix + suffix ] = { - expand: function( value ) { - var i = 0, - expanded = {}, - - // Assumes a single number if not a string - parts = typeof value === "string" ? value.split( " " ) : [ value ]; - - for ( ; i < 4; i++ ) { - expanded[ prefix + cssExpand[ i ] + suffix ] = - parts[ i ] || parts[ i - 2 ] || parts[ 0 ]; - } - - return expanded; - } - }; - - if ( prefix !== "margin" ) { - jQuery.cssHooks[ prefix + suffix ].set = setPositiveNumber; - } -} ); - -jQuery.fn.extend( { - css: function( name, value ) { - return access( this, function( elem, name, value ) { - var styles, len, - map = {}, - i = 0; - - if ( Array.isArray( name ) ) { - styles = getStyles( elem ); - len = name.length; - - for ( ; i < len; i++ ) { - map[ name[ i ] ] = jQuery.css( elem, name[ i ], false, styles ); - } - - return map; - } - - return value !== undefined ? - jQuery.style( elem, name, value ) : - jQuery.css( elem, name ); - }, name, value, arguments.length > 1 ); - } -} ); - - -function Tween( elem, options, prop, end, easing ) { - return new Tween.prototype.init( elem, options, prop, end, easing ); -} -jQuery.Tween = Tween; - -Tween.prototype = { - constructor: Tween, - init: function( elem, options, prop, end, easing, unit ) { - this.elem = elem; - this.prop = prop; - this.easing = easing || jQuery.easing._default; - this.options = options; - this.start = this.now = this.cur(); - this.end = end; - this.unit = unit || ( jQuery.cssNumber[ prop ] ? "" : "px" ); - }, - cur: function() { - var hooks = Tween.propHooks[ this.prop ]; - - return hooks && hooks.get ? - hooks.get( this ) : - Tween.propHooks._default.get( this ); - }, - run: function( percent ) { - var eased, - hooks = Tween.propHooks[ this.prop ]; - - if ( this.options.duration ) { - this.pos = eased = jQuery.easing[ this.easing ]( - percent, this.options.duration * percent, 0, 1, this.options.duration - ); - } else { - this.pos = eased = percent; - } - this.now = ( this.end - this.start ) * eased + this.start; - - if ( this.options.step ) { - this.options.step.call( this.elem, this.now, this ); - } - - if ( hooks && hooks.set ) { - hooks.set( this ); - } else { - Tween.propHooks._default.set( this ); - } - return this; - } -}; - -Tween.prototype.init.prototype = Tween.prototype; - -Tween.propHooks = { - _default: { - get: function( tween ) { - var result; - - // Use a property on the element directly when it is not a DOM element, - // or when there is no matching style property that exists. - if ( tween.elem.nodeType !== 1 || - tween.elem[ tween.prop ] != null && tween.elem.style[ tween.prop ] == null ) { - return tween.elem[ tween.prop ]; - } - - // Passing an empty string as a 3rd parameter to .css will automatically - // attempt a parseFloat and fallback to a string if the parse fails. - // Simple values such as "10px" are parsed to Float; - // complex values such as "rotate(1rad)" are returned as-is. - result = jQuery.css( tween.elem, tween.prop, "" ); - - // Empty strings, null, undefined and "auto" are converted to 0. - return !result || result === "auto" ? 0 : result; - }, - set: function( tween ) { - - // Use step hook for back compat. - // Use cssHook if its there. - // Use .style if available and use plain properties where available. - if ( jQuery.fx.step[ tween.prop ] ) { - jQuery.fx.step[ tween.prop ]( tween ); - } else if ( tween.elem.nodeType === 1 && ( - jQuery.cssHooks[ tween.prop ] || - tween.elem.style[ finalPropName( tween.prop ) ] != null ) ) { - jQuery.style( tween.elem, tween.prop, tween.now + tween.unit ); - } else { - tween.elem[ tween.prop ] = tween.now; - } - } - } -}; - -// Support: IE <=9 only -// Panic based approach to setting things on disconnected nodes -Tween.propHooks.scrollTop = Tween.propHooks.scrollLeft = { - set: function( tween ) { - if ( tween.elem.nodeType && tween.elem.parentNode ) { - tween.elem[ tween.prop ] = tween.now; - } - } -}; - -jQuery.easing = { - linear: function( p ) { - return p; - }, - swing: function( p ) { - return 0.5 - Math.cos( p * Math.PI ) / 2; - }, - _default: "swing" -}; - -jQuery.fx = Tween.prototype.init; - -// Back compat <1.8 extension point -jQuery.fx.step = {}; - - - - -var - fxNow, inProgress, - rfxtypes = /^(?:toggle|show|hide)$/, - rrun = /queueHooks$/; - -function schedule() { - if ( inProgress ) { - if ( document.hidden === false && window.requestAnimationFrame ) { - window.requestAnimationFrame( schedule ); - } else { - window.setTimeout( schedule, jQuery.fx.interval ); - } - - jQuery.fx.tick(); - } -} - -// Animations created synchronously will run synchronously -function createFxNow() { - window.setTimeout( function() { - fxNow = undefined; - } ); - return ( fxNow = Date.now() ); -} - -// Generate parameters to create a standard animation -function genFx( type, includeWidth ) { - var which, - i = 0, - attrs = { height: type }; - - // If we include width, step value is 1 to do all cssExpand values, - // otherwise step value is 2 to skip over Left and Right - includeWidth = includeWidth ? 1 : 0; - for ( ; i < 4; i += 2 - includeWidth ) { - which = cssExpand[ i ]; - attrs[ "margin" + which ] = attrs[ "padding" + which ] = type; - } - - if ( includeWidth ) { - attrs.opacity = attrs.width = type; - } - - return attrs; -} - -function createTween( value, prop, animation ) { - var tween, - collection = ( Animation.tweeners[ prop ] || [] ).concat( Animation.tweeners[ "*" ] ), - index = 0, - length = collection.length; - for ( ; index < length; index++ ) { - if ( ( tween = collection[ index ].call( animation, prop, value ) ) ) { - - // We're done with this property - return tween; - } - } -} - -function defaultPrefilter( elem, props, opts ) { - var prop, value, toggle, hooks, oldfire, propTween, restoreDisplay, display, - isBox = "width" in props || "height" in props, - anim = this, - orig = {}, - style = elem.style, - hidden = elem.nodeType && isHiddenWithinTree( elem ), - dataShow = dataPriv.get( elem, "fxshow" ); - - // Queue-skipping animations hijack the fx hooks - if ( !opts.queue ) { - hooks = jQuery._queueHooks( elem, "fx" ); - if ( hooks.unqueued == null ) { - hooks.unqueued = 0; - oldfire = hooks.empty.fire; - hooks.empty.fire = function() { - if ( !hooks.unqueued ) { - oldfire(); - } - }; - } - hooks.unqueued++; - - anim.always( function() { - - // Ensure the complete handler is called before this completes - anim.always( function() { - hooks.unqueued--; - if ( !jQuery.queue( elem, "fx" ).length ) { - hooks.empty.fire(); - } - } ); - } ); - } - - // Detect show/hide animations - for ( prop in props ) { - value = props[ prop ]; - if ( rfxtypes.test( value ) ) { - delete props[ prop ]; - toggle = toggle || value === "toggle"; - if ( value === ( hidden ? "hide" : "show" ) ) { - - // Pretend to be hidden if this is a "show" and - // there is still data from a stopped show/hide - if ( value === "show" && dataShow && dataShow[ prop ] !== undefined ) { - hidden = true; - - // Ignore all other no-op show/hide data - } else { - continue; - } - } - orig[ prop ] = dataShow && dataShow[ prop ] || jQuery.style( elem, prop ); - } - } - - // Bail out if this is a no-op like .hide().hide() - propTween = !jQuery.isEmptyObject( props ); - if ( !propTween && jQuery.isEmptyObject( orig ) ) { - return; - } - - // Restrict "overflow" and "display" styles during box animations - if ( isBox && elem.nodeType === 1 ) { - - // Support: IE <=9 - 11, Edge 12 - 15 - // Record all 3 overflow attributes because IE does not infer the shorthand - // from identically-valued overflowX and overflowY and Edge just mirrors - // the overflowX value there. - opts.overflow = [ style.overflow, style.overflowX, style.overflowY ]; - - // Identify a display type, preferring old show/hide data over the CSS cascade - restoreDisplay = dataShow && dataShow.display; - if ( restoreDisplay == null ) { - restoreDisplay = dataPriv.get( elem, "display" ); - } - display = jQuery.css( elem, "display" ); - if ( display === "none" ) { - if ( restoreDisplay ) { - display = restoreDisplay; - } else { - - // Get nonempty value(s) by temporarily forcing visibility - showHide( [ elem ], true ); - restoreDisplay = elem.style.display || restoreDisplay; - display = jQuery.css( elem, "display" ); - showHide( [ elem ] ); - } - } - - // Animate inline elements as inline-block - if ( display === "inline" || display === "inline-block" && restoreDisplay != null ) { - if ( jQuery.css( elem, "float" ) === "none" ) { - - // Restore the original display value at the end of pure show/hide animations - if ( !propTween ) { - anim.done( function() { - style.display = restoreDisplay; - } ); - if ( restoreDisplay == null ) { - display = style.display; - restoreDisplay = display === "none" ? "" : display; - } - } - style.display = "inline-block"; - } - } - } - - if ( opts.overflow ) { - style.overflow = "hidden"; - anim.always( function() { - style.overflow = opts.overflow[ 0 ]; - style.overflowX = opts.overflow[ 1 ]; - style.overflowY = opts.overflow[ 2 ]; - } ); - } - - // Implement show/hide animations - propTween = false; - for ( prop in orig ) { - - // General show/hide setup for this element animation - if ( !propTween ) { - if ( dataShow ) { - if ( "hidden" in dataShow ) { - hidden = dataShow.hidden; - } - } else { - dataShow = dataPriv.access( elem, "fxshow", { display: restoreDisplay } ); - } - - // Store hidden/visible for toggle so `.stop().toggle()` "reverses" - if ( toggle ) { - dataShow.hidden = !hidden; - } - - // Show elements before animating them - if ( hidden ) { - showHide( [ elem ], true ); - } - - /* eslint-disable no-loop-func */ - - anim.done( function() { - - /* eslint-enable no-loop-func */ - - // The final step of a "hide" animation is actually hiding the element - if ( !hidden ) { - showHide( [ elem ] ); - } - dataPriv.remove( elem, "fxshow" ); - for ( prop in orig ) { - jQuery.style( elem, prop, orig[ prop ] ); - } - } ); - } - - // Per-property setup - propTween = createTween( hidden ? dataShow[ prop ] : 0, prop, anim ); - if ( !( prop in dataShow ) ) { - dataShow[ prop ] = propTween.start; - if ( hidden ) { - propTween.end = propTween.start; - propTween.start = 0; - } - } - } -} - -function propFilter( props, specialEasing ) { - var index, name, easing, value, hooks; - - // camelCase, specialEasing and expand cssHook pass - for ( index in props ) { - name = camelCase( index ); - easing = specialEasing[ name ]; - value = props[ index ]; - if ( Array.isArray( value ) ) { - easing = value[ 1 ]; - value = props[ index ] = value[ 0 ]; - } - - if ( index !== name ) { - props[ name ] = value; - delete props[ index ]; - } - - hooks = jQuery.cssHooks[ name ]; - if ( hooks && "expand" in hooks ) { - value = hooks.expand( value ); - delete props[ name ]; - - // Not quite $.extend, this won't overwrite existing keys. - // Reusing 'index' because we have the correct "name" - for ( index in value ) { - if ( !( index in props ) ) { - props[ index ] = value[ index ]; - specialEasing[ index ] = easing; - } - } - } else { - specialEasing[ name ] = easing; - } - } -} - -function Animation( elem, properties, options ) { - var result, - stopped, - index = 0, - length = Animation.prefilters.length, - deferred = jQuery.Deferred().always( function() { - - // Don't match elem in the :animated selector - delete tick.elem; - } ), - tick = function() { - if ( stopped ) { - return false; - } - var currentTime = fxNow || createFxNow(), - remaining = Math.max( 0, animation.startTime + animation.duration - currentTime ), - - // Support: Android 2.3 only - // Archaic crash bug won't allow us to use `1 - ( 0.5 || 0 )` (#12497) - temp = remaining / animation.duration || 0, - percent = 1 - temp, - index = 0, - length = animation.tweens.length; - - for ( ; index < length; index++ ) { - animation.tweens[ index ].run( percent ); - } - - deferred.notifyWith( elem, [ animation, percent, remaining ] ); - - // If there's more to do, yield - if ( percent < 1 && length ) { - return remaining; - } - - // If this was an empty animation, synthesize a final progress notification - if ( !length ) { - deferred.notifyWith( elem, [ animation, 1, 0 ] ); - } - - // Resolve the animation and report its conclusion - deferred.resolveWith( elem, [ animation ] ); - return false; - }, - animation = deferred.promise( { - elem: elem, - props: jQuery.extend( {}, properties ), - opts: jQuery.extend( true, { - specialEasing: {}, - easing: jQuery.easing._default - }, options ), - originalProperties: properties, - originalOptions: options, - startTime: fxNow || createFxNow(), - duration: options.duration, - tweens: [], - createTween: function( prop, end ) { - var tween = jQuery.Tween( elem, animation.opts, prop, end, - animation.opts.specialEasing[ prop ] || animation.opts.easing ); - animation.tweens.push( tween ); - return tween; - }, - stop: function( gotoEnd ) { - var index = 0, - - // If we are going to the end, we want to run all the tweens - // otherwise we skip this part - length = gotoEnd ? animation.tweens.length : 0; - if ( stopped ) { - return this; - } - stopped = true; - for ( ; index < length; index++ ) { - animation.tweens[ index ].run( 1 ); - } - - // Resolve when we played the last frame; otherwise, reject - if ( gotoEnd ) { - deferred.notifyWith( elem, [ animation, 1, 0 ] ); - deferred.resolveWith( elem, [ animation, gotoEnd ] ); - } else { - deferred.rejectWith( elem, [ animation, gotoEnd ] ); - } - return this; - } - } ), - props = animation.props; - - propFilter( props, animation.opts.specialEasing ); - - for ( ; index < length; index++ ) { - result = Animation.prefilters[ index ].call( animation, elem, props, animation.opts ); - if ( result ) { - if ( isFunction( result.stop ) ) { - jQuery._queueHooks( animation.elem, animation.opts.queue ).stop = - result.stop.bind( result ); - } - return result; - } - } - - jQuery.map( props, createTween, animation ); - - if ( isFunction( animation.opts.start ) ) { - animation.opts.start.call( elem, animation ); - } - - // Attach callbacks from options - animation - .progress( animation.opts.progress ) - .done( animation.opts.done, animation.opts.complete ) - .fail( animation.opts.fail ) - .always( animation.opts.always ); - - jQuery.fx.timer( - jQuery.extend( tick, { - elem: elem, - anim: animation, - queue: animation.opts.queue - } ) - ); - - return animation; -} - -jQuery.Animation = jQuery.extend( Animation, { - - tweeners: { - "*": [ function( prop, value ) { - var tween = this.createTween( prop, value ); - adjustCSS( tween.elem, prop, rcssNum.exec( value ), tween ); - return tween; - } ] - }, - - tweener: function( props, callback ) { - if ( isFunction( props ) ) { - callback = props; - props = [ "*" ]; - } else { - props = props.match( rnothtmlwhite ); - } - - var prop, - index = 0, - length = props.length; - - for ( ; index < length; index++ ) { - prop = props[ index ]; - Animation.tweeners[ prop ] = Animation.tweeners[ prop ] || []; - Animation.tweeners[ prop ].unshift( callback ); - } - }, - - prefilters: [ defaultPrefilter ], - - prefilter: function( callback, prepend ) { - if ( prepend ) { - Animation.prefilters.unshift( callback ); - } else { - Animation.prefilters.push( callback ); - } - } -} ); - -jQuery.speed = function( speed, easing, fn ) { - var opt = speed && typeof speed === "object" ? jQuery.extend( {}, speed ) : { - complete: fn || !fn && easing || - isFunction( speed ) && speed, - duration: speed, - easing: fn && easing || easing && !isFunction( easing ) && easing - }; - - // Go to the end state if fx are off - if ( jQuery.fx.off ) { - opt.duration = 0; - - } else { - if ( typeof opt.duration !== "number" ) { - if ( opt.duration in jQuery.fx.speeds ) { - opt.duration = jQuery.fx.speeds[ opt.duration ]; - - } else { - opt.duration = jQuery.fx.speeds._default; - } - } - } - - // Normalize opt.queue - true/undefined/null -> "fx" - if ( opt.queue == null || opt.queue === true ) { - opt.queue = "fx"; - } - - // Queueing - opt.old = opt.complete; - - opt.complete = function() { - if ( isFunction( opt.old ) ) { - opt.old.call( this ); - } - - if ( opt.queue ) { - jQuery.dequeue( this, opt.queue ); - } - }; - - return opt; -}; - -jQuery.fn.extend( { - fadeTo: function( speed, to, easing, callback ) { - - // Show any hidden elements after setting opacity to 0 - return this.filter( isHiddenWithinTree ).css( "opacity", 0 ).show() - - // Animate to the value specified - .end().animate( { opacity: to }, speed, easing, callback ); - }, - animate: function( prop, speed, easing, callback ) { - var empty = jQuery.isEmptyObject( prop ), - optall = jQuery.speed( speed, easing, callback ), - doAnimation = function() { - - // Operate on a copy of prop so per-property easing won't be lost - var anim = Animation( this, jQuery.extend( {}, prop ), optall ); - - // Empty animations, or finishing resolves immediately - if ( empty || dataPriv.get( this, "finish" ) ) { - anim.stop( true ); - } - }; - doAnimation.finish = doAnimation; - - return empty || optall.queue === false ? - this.each( doAnimation ) : - this.queue( optall.queue, doAnimation ); - }, - stop: function( type, clearQueue, gotoEnd ) { - var stopQueue = function( hooks ) { - var stop = hooks.stop; - delete hooks.stop; - stop( gotoEnd ); - }; - - if ( typeof type !== "string" ) { - gotoEnd = clearQueue; - clearQueue = type; - type = undefined; - } - if ( clearQueue && type !== false ) { - this.queue( type || "fx", [] ); - } - - return this.each( function() { - var dequeue = true, - index = type != null && type + "queueHooks", - timers = jQuery.timers, - data = dataPriv.get( this ); - - if ( index ) { - if ( data[ index ] && data[ index ].stop ) { - stopQueue( data[ index ] ); - } - } else { - for ( index in data ) { - if ( data[ index ] && data[ index ].stop && rrun.test( index ) ) { - stopQueue( data[ index ] ); - } - } - } - - for ( index = timers.length; index--; ) { - if ( timers[ index ].elem === this && - ( type == null || timers[ index ].queue === type ) ) { - - timers[ index ].anim.stop( gotoEnd ); - dequeue = false; - timers.splice( index, 1 ); - } - } - - // Start the next in the queue if the last step wasn't forced. - // Timers currently will call their complete callbacks, which - // will dequeue but only if they were gotoEnd. - if ( dequeue || !gotoEnd ) { - jQuery.dequeue( this, type ); - } - } ); - }, - finish: function( type ) { - if ( type !== false ) { - type = type || "fx"; - } - return this.each( function() { - var index, - data = dataPriv.get( this ), - queue = data[ type + "queue" ], - hooks = data[ type + "queueHooks" ], - timers = jQuery.timers, - length = queue ? queue.length : 0; - - // Enable finishing flag on private data - data.finish = true; - - // Empty the queue first - jQuery.queue( this, type, [] ); - - if ( hooks && hooks.stop ) { - hooks.stop.call( this, true ); - } - - // Look for any active animations, and finish them - for ( index = timers.length; index--; ) { - if ( timers[ index ].elem === this && timers[ index ].queue === type ) { - timers[ index ].anim.stop( true ); - timers.splice( index, 1 ); - } - } - - // Look for any animations in the old queue and finish them - for ( index = 0; index < length; index++ ) { - if ( queue[ index ] && queue[ index ].finish ) { - queue[ index ].finish.call( this ); - } - } - - // Turn off finishing flag - delete data.finish; - } ); - } -} ); - -jQuery.each( [ "toggle", "show", "hide" ], function( i, name ) { - var cssFn = jQuery.fn[ name ]; - jQuery.fn[ name ] = function( speed, easing, callback ) { - return speed == null || typeof speed === "boolean" ? - cssFn.apply( this, arguments ) : - this.animate( genFx( name, true ), speed, easing, callback ); - }; -} ); - -// Generate shortcuts for custom animations -jQuery.each( { - slideDown: genFx( "show" ), - slideUp: genFx( "hide" ), - slideToggle: genFx( "toggle" ), - fadeIn: { opacity: "show" }, - fadeOut: { opacity: "hide" }, - fadeToggle: { opacity: "toggle" } -}, function( name, props ) { - jQuery.fn[ name ] = function( speed, easing, callback ) { - return this.animate( props, speed, easing, callback ); - }; -} ); - -jQuery.timers = []; -jQuery.fx.tick = function() { - var timer, - i = 0, - timers = jQuery.timers; - - fxNow = Date.now(); - - for ( ; i < timers.length; i++ ) { - timer = timers[ i ]; - - // Run the timer and safely remove it when done (allowing for external removal) - if ( !timer() && timers[ i ] === timer ) { - timers.splice( i--, 1 ); - } - } - - if ( !timers.length ) { - jQuery.fx.stop(); - } - fxNow = undefined; -}; - -jQuery.fx.timer = function( timer ) { - jQuery.timers.push( timer ); - jQuery.fx.start(); -}; - -jQuery.fx.interval = 13; -jQuery.fx.start = function() { - if ( inProgress ) { - return; - } - - inProgress = true; - schedule(); -}; - -jQuery.fx.stop = function() { - inProgress = null; -}; - -jQuery.fx.speeds = { - slow: 600, - fast: 200, - - // Default speed - _default: 400 -}; - - -// Based off of the plugin by Clint Helfers, with permission. -// https://web.archive.org/web/20100324014747/http://blindsignals.com/index.php/2009/07/jquery-delay/ -jQuery.fn.delay = function( time, type ) { - time = jQuery.fx ? jQuery.fx.speeds[ time ] || time : time; - type = type || "fx"; - - return this.queue( type, function( next, hooks ) { - var timeout = window.setTimeout( next, time ); - hooks.stop = function() { - window.clearTimeout( timeout ); - }; - } ); -}; - - -( function() { - var input = document.createElement( "input" ), - select = document.createElement( "select" ), - opt = select.appendChild( document.createElement( "option" ) ); - - input.type = "checkbox"; - - // Support: Android <=4.3 only - // Default value for a checkbox should be "on" - support.checkOn = input.value !== ""; - - // Support: IE <=11 only - // Must access selectedIndex to make default options select - support.optSelected = opt.selected; - - // Support: IE <=11 only - // An input loses its value after becoming a radio - input = document.createElement( "input" ); - input.value = "t"; - input.type = "radio"; - support.radioValue = input.value === "t"; -} )(); - - -var boolHook, - attrHandle = jQuery.expr.attrHandle; - -jQuery.fn.extend( { - attr: function( name, value ) { - return access( this, jQuery.attr, name, value, arguments.length > 1 ); - }, - - removeAttr: function( name ) { - return this.each( function() { - jQuery.removeAttr( this, name ); - } ); - } -} ); - -jQuery.extend( { - attr: function( elem, name, value ) { - var ret, hooks, - nType = elem.nodeType; - - // Don't get/set attributes on text, comment and attribute nodes - if ( nType === 3 || nType === 8 || nType === 2 ) { - return; - } - - // Fallback to prop when attributes are not supported - if ( typeof elem.getAttribute === "undefined" ) { - return jQuery.prop( elem, name, value ); - } - - // Attribute hooks are determined by the lowercase version - // Grab necessary hook if one is defined - if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) { - hooks = jQuery.attrHooks[ name.toLowerCase() ] || - ( jQuery.expr.match.bool.test( name ) ? boolHook : undefined ); - } - - if ( value !== undefined ) { - if ( value === null ) { - jQuery.removeAttr( elem, name ); - return; - } - - if ( hooks && "set" in hooks && - ( ret = hooks.set( elem, value, name ) ) !== undefined ) { - return ret; - } - - elem.setAttribute( name, value + "" ); - return value; - } - - if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) { - return ret; - } - - ret = jQuery.find.attr( elem, name ); - - // Non-existent attributes return null, we normalize to undefined - return ret == null ? undefined : ret; - }, - - attrHooks: { - type: { - set: function( elem, value ) { - if ( !support.radioValue && value === "radio" && - nodeName( elem, "input" ) ) { - var val = elem.value; - elem.setAttribute( "type", value ); - if ( val ) { - elem.value = val; - } - return value; - } - } - } - }, - - removeAttr: function( elem, value ) { - var name, - i = 0, - - // Attribute names can contain non-HTML whitespace characters - // https://html.spec.whatwg.org/multipage/syntax.html#attributes-2 - attrNames = value && value.match( rnothtmlwhite ); - - if ( attrNames && elem.nodeType === 1 ) { - while ( ( name = attrNames[ i++ ] ) ) { - elem.removeAttribute( name ); - } - } - } -} ); - -// Hooks for boolean attributes -boolHook = { - set: function( elem, value, name ) { - if ( value === false ) { - - // Remove boolean attributes when set to false - jQuery.removeAttr( elem, name ); - } else { - elem.setAttribute( name, name ); - } - return name; - } -}; - -jQuery.each( jQuery.expr.match.bool.source.match( /\w+/g ), function( i, name ) { - var getter = attrHandle[ name ] || jQuery.find.attr; - - attrHandle[ name ] = function( elem, name, isXML ) { - var ret, handle, - lowercaseName = name.toLowerCase(); - - if ( !isXML ) { - - // Avoid an infinite loop by temporarily removing this function from the getter - handle = attrHandle[ lowercaseName ]; - attrHandle[ lowercaseName ] = ret; - ret = getter( elem, name, isXML ) != null ? - lowercaseName : - null; - attrHandle[ lowercaseName ] = handle; - } - return ret; - }; -} ); - - - - -var rfocusable = /^(?:input|select|textarea|button)$/i, - rclickable = /^(?:a|area)$/i; - -jQuery.fn.extend( { - prop: function( name, value ) { - return access( this, jQuery.prop, name, value, arguments.length > 1 ); - }, - - removeProp: function( name ) { - return this.each( function() { - delete this[ jQuery.propFix[ name ] || name ]; - } ); - } -} ); - -jQuery.extend( { - prop: function( elem, name, value ) { - var ret, hooks, - nType = elem.nodeType; - - // Don't get/set properties on text, comment and attribute nodes - if ( nType === 3 || nType === 8 || nType === 2 ) { - return; - } - - if ( nType !== 1 || !jQuery.isXMLDoc( elem ) ) { - - // Fix name and attach hooks - name = jQuery.propFix[ name ] || name; - hooks = jQuery.propHooks[ name ]; - } - - if ( value !== undefined ) { - if ( hooks && "set" in hooks && - ( ret = hooks.set( elem, value, name ) ) !== undefined ) { - return ret; - } - - return ( elem[ name ] = value ); - } - - if ( hooks && "get" in hooks && ( ret = hooks.get( elem, name ) ) !== null ) { - return ret; - } - - return elem[ name ]; - }, - - propHooks: { - tabIndex: { - get: function( elem ) { - - // Support: IE <=9 - 11 only - // elem.tabIndex doesn't always return the - // correct value when it hasn't been explicitly set - // https://web.archive.org/web/20141116233347/http://fluidproject.org/blog/2008/01/09/getting-setting-and-removing-tabindex-values-with-javascript/ - // Use proper attribute retrieval(#12072) - var tabindex = jQuery.find.attr( elem, "tabindex" ); - - if ( tabindex ) { - return parseInt( tabindex, 10 ); - } - - if ( - rfocusable.test( elem.nodeName ) || - rclickable.test( elem.nodeName ) && - elem.href - ) { - return 0; - } - - return -1; - } - } - }, - - propFix: { - "for": "htmlFor", - "class": "className" - } -} ); - -// Support: IE <=11 only -// Accessing the selectedIndex property -// forces the browser to respect setting selected -// on the option -// The getter ensures a default option is selected -// when in an optgroup -// eslint rule "no-unused-expressions" is disabled for this code -// since it considers such accessions noop -if ( !support.optSelected ) { - jQuery.propHooks.selected = { - get: function( elem ) { - - /* eslint no-unused-expressions: "off" */ - - var parent = elem.parentNode; - if ( parent && parent.parentNode ) { - parent.parentNode.selectedIndex; - } - return null; - }, - set: function( elem ) { - - /* eslint no-unused-expressions: "off" */ - - var parent = elem.parentNode; - if ( parent ) { - parent.selectedIndex; - - if ( parent.parentNode ) { - parent.parentNode.selectedIndex; - } - } - } - }; -} - -jQuery.each( [ - "tabIndex", - "readOnly", - "maxLength", - "cellSpacing", - "cellPadding", - "rowSpan", - "colSpan", - "useMap", - "frameBorder", - "contentEditable" -], function() { - jQuery.propFix[ this.toLowerCase() ] = this; -} ); - - - - - // Strip and collapse whitespace according to HTML spec - // https://infra.spec.whatwg.org/#strip-and-collapse-ascii-whitespace - function stripAndCollapse( value ) { - var tokens = value.match( rnothtmlwhite ) || []; - return tokens.join( " " ); - } - - -function getClass( elem ) { - return elem.getAttribute && elem.getAttribute( "class" ) || ""; -} - -function classesToArray( value ) { - if ( Array.isArray( value ) ) { - return value; - } - if ( typeof value === "string" ) { - return value.match( rnothtmlwhite ) || []; - } - return []; -} - -jQuery.fn.extend( { - addClass: function( value ) { - var classes, elem, cur, curValue, clazz, j, finalValue, - i = 0; - - if ( isFunction( value ) ) { - return this.each( function( j ) { - jQuery( this ).addClass( value.call( this, j, getClass( this ) ) ); - } ); - } - - classes = classesToArray( value ); - - if ( classes.length ) { - while ( ( elem = this[ i++ ] ) ) { - curValue = getClass( elem ); - cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " ); - - if ( cur ) { - j = 0; - while ( ( clazz = classes[ j++ ] ) ) { - if ( cur.indexOf( " " + clazz + " " ) < 0 ) { - cur += clazz + " "; - } - } - - // Only assign if different to avoid unneeded rendering. - finalValue = stripAndCollapse( cur ); - if ( curValue !== finalValue ) { - elem.setAttribute( "class", finalValue ); - } - } - } - } - - return this; - }, - - removeClass: function( value ) { - var classes, elem, cur, curValue, clazz, j, finalValue, - i = 0; - - if ( isFunction( value ) ) { - return this.each( function( j ) { - jQuery( this ).removeClass( value.call( this, j, getClass( this ) ) ); - } ); - } - - if ( !arguments.length ) { - return this.attr( "class", "" ); - } - - classes = classesToArray( value ); - - if ( classes.length ) { - while ( ( elem = this[ i++ ] ) ) { - curValue = getClass( elem ); - - // This expression is here for better compressibility (see addClass) - cur = elem.nodeType === 1 && ( " " + stripAndCollapse( curValue ) + " " ); - - if ( cur ) { - j = 0; - while ( ( clazz = classes[ j++ ] ) ) { - - // Remove *all* instances - while ( cur.indexOf( " " + clazz + " " ) > -1 ) { - cur = cur.replace( " " + clazz + " ", " " ); - } - } - - // Only assign if different to avoid unneeded rendering. - finalValue = stripAndCollapse( cur ); - if ( curValue !== finalValue ) { - elem.setAttribute( "class", finalValue ); - } - } - } - } - - return this; - }, - - toggleClass: function( value, stateVal ) { - var type = typeof value, - isValidValue = type === "string" || Array.isArray( value ); - - if ( typeof stateVal === "boolean" && isValidValue ) { - return stateVal ? this.addClass( value ) : this.removeClass( value ); - } - - if ( isFunction( value ) ) { - return this.each( function( i ) { - jQuery( this ).toggleClass( - value.call( this, i, getClass( this ), stateVal ), - stateVal - ); - } ); - } - - return this.each( function() { - var className, i, self, classNames; - - if ( isValidValue ) { - - // Toggle individual class names - i = 0; - self = jQuery( this ); - classNames = classesToArray( value ); - - while ( ( className = classNames[ i++ ] ) ) { - - // Check each className given, space separated list - if ( self.hasClass( className ) ) { - self.removeClass( className ); - } else { - self.addClass( className ); - } - } - - // Toggle whole class name - } else if ( value === undefined || type === "boolean" ) { - className = getClass( this ); - if ( className ) { - - // Store className if set - dataPriv.set( this, "__className__", className ); - } - - // If the element has a class name or if we're passed `false`, - // then remove the whole classname (if there was one, the above saved it). - // Otherwise bring back whatever was previously saved (if anything), - // falling back to the empty string if nothing was stored. - if ( this.setAttribute ) { - this.setAttribute( "class", - className || value === false ? - "" : - dataPriv.get( this, "__className__" ) || "" - ); - } - } - } ); - }, - - hasClass: function( selector ) { - var className, elem, - i = 0; - - className = " " + selector + " "; - while ( ( elem = this[ i++ ] ) ) { - if ( elem.nodeType === 1 && - ( " " + stripAndCollapse( getClass( elem ) ) + " " ).indexOf( className ) > -1 ) { - return true; - } - } - - return false; - } -} ); - - - - -var rreturn = /\r/g; - -jQuery.fn.extend( { - val: function( value ) { - var hooks, ret, valueIsFunction, - elem = this[ 0 ]; - - if ( !arguments.length ) { - if ( elem ) { - hooks = jQuery.valHooks[ elem.type ] || - jQuery.valHooks[ elem.nodeName.toLowerCase() ]; - - if ( hooks && - "get" in hooks && - ( ret = hooks.get( elem, "value" ) ) !== undefined - ) { - return ret; - } - - ret = elem.value; - - // Handle most common string cases - if ( typeof ret === "string" ) { - return ret.replace( rreturn, "" ); - } - - // Handle cases where value is null/undef or number - return ret == null ? "" : ret; - } - - return; - } - - valueIsFunction = isFunction( value ); - - return this.each( function( i ) { - var val; - - if ( this.nodeType !== 1 ) { - return; - } - - if ( valueIsFunction ) { - val = value.call( this, i, jQuery( this ).val() ); - } else { - val = value; - } - - // Treat null/undefined as ""; convert numbers to string - if ( val == null ) { - val = ""; - - } else if ( typeof val === "number" ) { - val += ""; - - } else if ( Array.isArray( val ) ) { - val = jQuery.map( val, function( value ) { - return value == null ? "" : value + ""; - } ); - } - - hooks = jQuery.valHooks[ this.type ] || jQuery.valHooks[ this.nodeName.toLowerCase() ]; - - // If set returns undefined, fall back to normal setting - if ( !hooks || !( "set" in hooks ) || hooks.set( this, val, "value" ) === undefined ) { - this.value = val; - } - } ); - } -} ); - -jQuery.extend( { - valHooks: { - option: { - get: function( elem ) { - - var val = jQuery.find.attr( elem, "value" ); - return val != null ? - val : - - // Support: IE <=10 - 11 only - // option.text throws exceptions (#14686, #14858) - // Strip and collapse whitespace - // https://html.spec.whatwg.org/#strip-and-collapse-whitespace - stripAndCollapse( jQuery.text( elem ) ); - } - }, - select: { - get: function( elem ) { - var value, option, i, - options = elem.options, - index = elem.selectedIndex, - one = elem.type === "select-one", - values = one ? null : [], - max = one ? index + 1 : options.length; - - if ( index < 0 ) { - i = max; - - } else { - i = one ? index : 0; - } - - // Loop through all the selected options - for ( ; i < max; i++ ) { - option = options[ i ]; - - // Support: IE <=9 only - // IE8-9 doesn't update selected after form reset (#2551) - if ( ( option.selected || i === index ) && - - // Don't return options that are disabled or in a disabled optgroup - !option.disabled && - ( !option.parentNode.disabled || - !nodeName( option.parentNode, "optgroup" ) ) ) { - - // Get the specific value for the option - value = jQuery( option ).val(); - - // We don't need an array for one selects - if ( one ) { - return value; - } - - // Multi-Selects return an array - values.push( value ); - } - } - - return values; - }, - - set: function( elem, value ) { - var optionSet, option, - options = elem.options, - values = jQuery.makeArray( value ), - i = options.length; - - while ( i-- ) { - option = options[ i ]; - - /* eslint-disable no-cond-assign */ - - if ( option.selected = - jQuery.inArray( jQuery.valHooks.option.get( option ), values ) > -1 - ) { - optionSet = true; - } - - /* eslint-enable no-cond-assign */ - } - - // Force browsers to behave consistently when non-matching value is set - if ( !optionSet ) { - elem.selectedIndex = -1; - } - return values; - } - } - } -} ); - -// Radios and checkboxes getter/setter -jQuery.each( [ "radio", "checkbox" ], function() { - jQuery.valHooks[ this ] = { - set: function( elem, value ) { - if ( Array.isArray( value ) ) { - return ( elem.checked = jQuery.inArray( jQuery( elem ).val(), value ) > -1 ); - } - } - }; - if ( !support.checkOn ) { - jQuery.valHooks[ this ].get = function( elem ) { - return elem.getAttribute( "value" ) === null ? "on" : elem.value; - }; - } -} ); - - - - -// Return jQuery for attributes-only inclusion - - -support.focusin = "onfocusin" in window; - - -var rfocusMorph = /^(?:focusinfocus|focusoutblur)$/, - stopPropagationCallback = function( e ) { - e.stopPropagation(); - }; - -jQuery.extend( jQuery.event, { - - trigger: function( event, data, elem, onlyHandlers ) { - - var i, cur, tmp, bubbleType, ontype, handle, special, lastElement, - eventPath = [ elem || document ], - type = hasOwn.call( event, "type" ) ? event.type : event, - namespaces = hasOwn.call( event, "namespace" ) ? event.namespace.split( "." ) : []; - - cur = lastElement = tmp = elem = elem || document; - - // Don't do events on text and comment nodes - if ( elem.nodeType === 3 || elem.nodeType === 8 ) { - return; - } - - // focus/blur morphs to focusin/out; ensure we're not firing them right now - if ( rfocusMorph.test( type + jQuery.event.triggered ) ) { - return; - } - - if ( type.indexOf( "." ) > -1 ) { - - // Namespaced trigger; create a regexp to match event type in handle() - namespaces = type.split( "." ); - type = namespaces.shift(); - namespaces.sort(); - } - ontype = type.indexOf( ":" ) < 0 && "on" + type; - - // Caller can pass in a jQuery.Event object, Object, or just an event type string - event = event[ jQuery.expando ] ? - event : - new jQuery.Event( type, typeof event === "object" && event ); - - // Trigger bitmask: & 1 for native handlers; & 2 for jQuery (always true) - event.isTrigger = onlyHandlers ? 2 : 3; - event.namespace = namespaces.join( "." ); - event.rnamespace = event.namespace ? - new RegExp( "(^|\\.)" + namespaces.join( "\\.(?:.*\\.|)" ) + "(\\.|$)" ) : - null; - - // Clean up the event in case it is being reused - event.result = undefined; - if ( !event.target ) { - event.target = elem; - } - - // Clone any incoming data and prepend the event, creating the handler arg list - data = data == null ? - [ event ] : - jQuery.makeArray( data, [ event ] ); - - // Allow special events to draw outside the lines - special = jQuery.event.special[ type ] || {}; - if ( !onlyHandlers && special.trigger && special.trigger.apply( elem, data ) === false ) { - return; - } - - // Determine event propagation path in advance, per W3C events spec (#9951) - // Bubble up to document, then to window; watch for a global ownerDocument var (#9724) - if ( !onlyHandlers && !special.noBubble && !isWindow( elem ) ) { - - bubbleType = special.delegateType || type; - if ( !rfocusMorph.test( bubbleType + type ) ) { - cur = cur.parentNode; - } - for ( ; cur; cur = cur.parentNode ) { - eventPath.push( cur ); - tmp = cur; - } - - // Only add window if we got to document (e.g., not plain obj or detached DOM) - if ( tmp === ( elem.ownerDocument || document ) ) { - eventPath.push( tmp.defaultView || tmp.parentWindow || window ); - } - } - - // Fire handlers on the event path - i = 0; - while ( ( cur = eventPath[ i++ ] ) && !event.isPropagationStopped() ) { - lastElement = cur; - event.type = i > 1 ? - bubbleType : - special.bindType || type; - - // jQuery handler - handle = ( dataPriv.get( cur, "events" ) || {} )[ event.type ] && - dataPriv.get( cur, "handle" ); - if ( handle ) { - handle.apply( cur, data ); - } - - // Native handler - handle = ontype && cur[ ontype ]; - if ( handle && handle.apply && acceptData( cur ) ) { - event.result = handle.apply( cur, data ); - if ( event.result === false ) { - event.preventDefault(); - } - } - } - event.type = type; - - // If nobody prevented the default action, do it now - if ( !onlyHandlers && !event.isDefaultPrevented() ) { - - if ( ( !special._default || - special._default.apply( eventPath.pop(), data ) === false ) && - acceptData( elem ) ) { - - // Call a native DOM method on the target with the same name as the event. - // Don't do default actions on window, that's where global variables be (#6170) - if ( ontype && isFunction( elem[ type ] ) && !isWindow( elem ) ) { - - // Don't re-trigger an onFOO event when we call its FOO() method - tmp = elem[ ontype ]; - - if ( tmp ) { - elem[ ontype ] = null; - } - - // Prevent re-triggering of the same event, since we already bubbled it above - jQuery.event.triggered = type; - - if ( event.isPropagationStopped() ) { - lastElement.addEventListener( type, stopPropagationCallback ); - } - - elem[ type ](); - - if ( event.isPropagationStopped() ) { - lastElement.removeEventListener( type, stopPropagationCallback ); - } - - jQuery.event.triggered = undefined; - - if ( tmp ) { - elem[ ontype ] = tmp; - } - } - } - } - - return event.result; - }, - - // Piggyback on a donor event to simulate a different one - // Used only for `focus(in | out)` events - simulate: function( type, elem, event ) { - var e = jQuery.extend( - new jQuery.Event(), - event, - { - type: type, - isSimulated: true - } - ); - - jQuery.event.trigger( e, null, elem ); - } - -} ); - -jQuery.fn.extend( { - - trigger: function( type, data ) { - return this.each( function() { - jQuery.event.trigger( type, data, this ); - } ); - }, - triggerHandler: function( type, data ) { - var elem = this[ 0 ]; - if ( elem ) { - return jQuery.event.trigger( type, data, elem, true ); - } - } -} ); - - -// Support: Firefox <=44 -// Firefox doesn't have focus(in | out) events -// Related ticket - https://bugzilla.mozilla.org/show_bug.cgi?id=687787 -// -// Support: Chrome <=48 - 49, Safari <=9.0 - 9.1 -// focus(in | out) events fire after focus & blur events, -// which is spec violation - http://www.w3.org/TR/DOM-Level-3-Events/#events-focusevent-event-order -// Related ticket - https://bugs.chromium.org/p/chromium/issues/detail?id=449857 -if ( !support.focusin ) { - jQuery.each( { focus: "focusin", blur: "focusout" }, function( orig, fix ) { - - // Attach a single capturing handler on the document while someone wants focusin/focusout - var handler = function( event ) { - jQuery.event.simulate( fix, event.target, jQuery.event.fix( event ) ); - }; - - jQuery.event.special[ fix ] = { - setup: function() { - var doc = this.ownerDocument || this, - attaches = dataPriv.access( doc, fix ); - - if ( !attaches ) { - doc.addEventListener( orig, handler, true ); - } - dataPriv.access( doc, fix, ( attaches || 0 ) + 1 ); - }, - teardown: function() { - var doc = this.ownerDocument || this, - attaches = dataPriv.access( doc, fix ) - 1; - - if ( !attaches ) { - doc.removeEventListener( orig, handler, true ); - dataPriv.remove( doc, fix ); - - } else { - dataPriv.access( doc, fix, attaches ); - } - } - }; - } ); -} -var location = window.location; - -var nonce = Date.now(); - -var rquery = ( /\?/ ); - - - -// Cross-browser xml parsing -jQuery.parseXML = function( data ) { - var xml; - if ( !data || typeof data !== "string" ) { - return null; - } - - // Support: IE 9 - 11 only - // IE throws on parseFromString with invalid input. - try { - xml = ( new window.DOMParser() ).parseFromString( data, "text/xml" ); - } catch ( e ) { - xml = undefined; - } - - if ( !xml || xml.getElementsByTagName( "parsererror" ).length ) { - jQuery.error( "Invalid XML: " + data ); - } - return xml; -}; - - -var - rbracket = /\[\]$/, - rCRLF = /\r?\n/g, - rsubmitterTypes = /^(?:submit|button|image|reset|file)$/i, - rsubmittable = /^(?:input|select|textarea|keygen)/i; - -function buildParams( prefix, obj, traditional, add ) { - var name; - - if ( Array.isArray( obj ) ) { - - // Serialize array item. - jQuery.each( obj, function( i, v ) { - if ( traditional || rbracket.test( prefix ) ) { - - // Treat each array item as a scalar. - add( prefix, v ); - - } else { - - // Item is non-scalar (array or object), encode its numeric index. - buildParams( - prefix + "[" + ( typeof v === "object" && v != null ? i : "" ) + "]", - v, - traditional, - add - ); - } - } ); - - } else if ( !traditional && toType( obj ) === "object" ) { - - // Serialize object item. - for ( name in obj ) { - buildParams( prefix + "[" + name + "]", obj[ name ], traditional, add ); - } - - } else { - - // Serialize scalar item. - add( prefix, obj ); - } -} - -// Serialize an array of form elements or a set of -// key/values into a query string -jQuery.param = function( a, traditional ) { - var prefix, - s = [], - add = function( key, valueOrFunction ) { - - // If value is a function, invoke it and use its return value - var value = isFunction( valueOrFunction ) ? - valueOrFunction() : - valueOrFunction; - - s[ s.length ] = encodeURIComponent( key ) + "=" + - encodeURIComponent( value == null ? "" : value ); - }; - - if ( a == null ) { - return ""; - } - - // If an array was passed in, assume that it is an array of form elements. - if ( Array.isArray( a ) || ( a.jquery && !jQuery.isPlainObject( a ) ) ) { - - // Serialize the form elements - jQuery.each( a, function() { - add( this.name, this.value ); - } ); - - } else { - - // If traditional, encode the "old" way (the way 1.3.2 or older - // did it), otherwise encode params recursively. - for ( prefix in a ) { - buildParams( prefix, a[ prefix ], traditional, add ); - } - } - - // Return the resulting serialization - return s.join( "&" ); -}; - -jQuery.fn.extend( { - serialize: function() { - return jQuery.param( this.serializeArray() ); - }, - serializeArray: function() { - return this.map( function() { - - // Can add propHook for "elements" to filter or add form elements - var elements = jQuery.prop( this, "elements" ); - return elements ? jQuery.makeArray( elements ) : this; - } ) - .filter( function() { - var type = this.type; - - // Use .is( ":disabled" ) so that fieldset[disabled] works - return this.name && !jQuery( this ).is( ":disabled" ) && - rsubmittable.test( this.nodeName ) && !rsubmitterTypes.test( type ) && - ( this.checked || !rcheckableType.test( type ) ); - } ) - .map( function( i, elem ) { - var val = jQuery( this ).val(); - - if ( val == null ) { - return null; - } - - if ( Array.isArray( val ) ) { - return jQuery.map( val, function( val ) { - return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) }; - } ); - } - - return { name: elem.name, value: val.replace( rCRLF, "\r\n" ) }; - } ).get(); - } -} ); - - -var - r20 = /%20/g, - rhash = /#.*$/, - rantiCache = /([?&])_=[^&]*/, - rheaders = /^(.*?):[ \t]*([^\r\n]*)$/mg, - - // #7653, #8125, #8152: local protocol detection - rlocalProtocol = /^(?:about|app|app-storage|.+-extension|file|res|widget):$/, - rnoContent = /^(?:GET|HEAD)$/, - rprotocol = /^\/\//, - - /* Prefilters - * 1) They are useful to introduce custom dataTypes (see ajax/jsonp.js for an example) - * 2) These are called: - * - BEFORE asking for a transport - * - AFTER param serialization (s.data is a string if s.processData is true) - * 3) key is the dataType - * 4) the catchall symbol "*" can be used - * 5) execution will start with transport dataType and THEN continue down to "*" if needed - */ - prefilters = {}, - - /* Transports bindings - * 1) key is the dataType - * 2) the catchall symbol "*" can be used - * 3) selection will start with transport dataType and THEN go to "*" if needed - */ - transports = {}, - - // Avoid comment-prolog char sequence (#10098); must appease lint and evade compression - allTypes = "*/".concat( "*" ), - - // Anchor tag for parsing the document origin - originAnchor = document.createElement( "a" ); - originAnchor.href = location.href; - -// Base "constructor" for jQuery.ajaxPrefilter and jQuery.ajaxTransport -function addToPrefiltersOrTransports( structure ) { - - // dataTypeExpression is optional and defaults to "*" - return function( dataTypeExpression, func ) { - - if ( typeof dataTypeExpression !== "string" ) { - func = dataTypeExpression; - dataTypeExpression = "*"; - } - - var dataType, - i = 0, - dataTypes = dataTypeExpression.toLowerCase().match( rnothtmlwhite ) || []; - - if ( isFunction( func ) ) { - - // For each dataType in the dataTypeExpression - while ( ( dataType = dataTypes[ i++ ] ) ) { - - // Prepend if requested - if ( dataType[ 0 ] === "+" ) { - dataType = dataType.slice( 1 ) || "*"; - ( structure[ dataType ] = structure[ dataType ] || [] ).unshift( func ); - - // Otherwise append - } else { - ( structure[ dataType ] = structure[ dataType ] || [] ).push( func ); - } - } - } - }; -} - -// Base inspection function for prefilters and transports -function inspectPrefiltersOrTransports( structure, options, originalOptions, jqXHR ) { - - var inspected = {}, - seekingTransport = ( structure === transports ); - - function inspect( dataType ) { - var selected; - inspected[ dataType ] = true; - jQuery.each( structure[ dataType ] || [], function( _, prefilterOrFactory ) { - var dataTypeOrTransport = prefilterOrFactory( options, originalOptions, jqXHR ); - if ( typeof dataTypeOrTransport === "string" && - !seekingTransport && !inspected[ dataTypeOrTransport ] ) { - - options.dataTypes.unshift( dataTypeOrTransport ); - inspect( dataTypeOrTransport ); - return false; - } else if ( seekingTransport ) { - return !( selected = dataTypeOrTransport ); - } - } ); - return selected; - } - - return inspect( options.dataTypes[ 0 ] ) || !inspected[ "*" ] && inspect( "*" ); -} - -// A special extend for ajax options -// that takes "flat" options (not to be deep extended) -// Fixes #9887 -function ajaxExtend( target, src ) { - var key, deep, - flatOptions = jQuery.ajaxSettings.flatOptions || {}; - - for ( key in src ) { - if ( src[ key ] !== undefined ) { - ( flatOptions[ key ] ? target : ( deep || ( deep = {} ) ) )[ key ] = src[ key ]; - } - } - if ( deep ) { - jQuery.extend( true, target, deep ); - } - - return target; -} - -/* Handles responses to an ajax request: - * - finds the right dataType (mediates between content-type and expected dataType) - * - returns the corresponding response - */ -function ajaxHandleResponses( s, jqXHR, responses ) { - - var ct, type, finalDataType, firstDataType, - contents = s.contents, - dataTypes = s.dataTypes; - - // Remove auto dataType and get content-type in the process - while ( dataTypes[ 0 ] === "*" ) { - dataTypes.shift(); - if ( ct === undefined ) { - ct = s.mimeType || jqXHR.getResponseHeader( "Content-Type" ); - } - } - - // Check if we're dealing with a known content-type - if ( ct ) { - for ( type in contents ) { - if ( contents[ type ] && contents[ type ].test( ct ) ) { - dataTypes.unshift( type ); - break; - } - } - } - - // Check to see if we have a response for the expected dataType - if ( dataTypes[ 0 ] in responses ) { - finalDataType = dataTypes[ 0 ]; - } else { - - // Try convertible dataTypes - for ( type in responses ) { - if ( !dataTypes[ 0 ] || s.converters[ type + " " + dataTypes[ 0 ] ] ) { - finalDataType = type; - break; - } - if ( !firstDataType ) { - firstDataType = type; - } - } - - // Or just use first one - finalDataType = finalDataType || firstDataType; - } - - // If we found a dataType - // We add the dataType to the list if needed - // and return the corresponding response - if ( finalDataType ) { - if ( finalDataType !== dataTypes[ 0 ] ) { - dataTypes.unshift( finalDataType ); - } - return responses[ finalDataType ]; - } -} - -/* Chain conversions given the request and the original response - * Also sets the responseXXX fields on the jqXHR instance - */ -function ajaxConvert( s, response, jqXHR, isSuccess ) { - var conv2, current, conv, tmp, prev, - converters = {}, - - // Work with a copy of dataTypes in case we need to modify it for conversion - dataTypes = s.dataTypes.slice(); - - // Create converters map with lowercased keys - if ( dataTypes[ 1 ] ) { - for ( conv in s.converters ) { - converters[ conv.toLowerCase() ] = s.converters[ conv ]; - } - } - - current = dataTypes.shift(); - - // Convert to each sequential dataType - while ( current ) { - - if ( s.responseFields[ current ] ) { - jqXHR[ s.responseFields[ current ] ] = response; - } - - // Apply the dataFilter if provided - if ( !prev && isSuccess && s.dataFilter ) { - response = s.dataFilter( response, s.dataType ); - } - - prev = current; - current = dataTypes.shift(); - - if ( current ) { - - // There's only work to do if current dataType is non-auto - if ( current === "*" ) { - - current = prev; - - // Convert response if prev dataType is non-auto and differs from current - } else if ( prev !== "*" && prev !== current ) { - - // Seek a direct converter - conv = converters[ prev + " " + current ] || converters[ "* " + current ]; - - // If none found, seek a pair - if ( !conv ) { - for ( conv2 in converters ) { - - // If conv2 outputs current - tmp = conv2.split( " " ); - if ( tmp[ 1 ] === current ) { - - // If prev can be converted to accepted input - conv = converters[ prev + " " + tmp[ 0 ] ] || - converters[ "* " + tmp[ 0 ] ]; - if ( conv ) { - - // Condense equivalence converters - if ( conv === true ) { - conv = converters[ conv2 ]; - - // Otherwise, insert the intermediate dataType - } else if ( converters[ conv2 ] !== true ) { - current = tmp[ 0 ]; - dataTypes.unshift( tmp[ 1 ] ); - } - break; - } - } - } - } - - // Apply converter (if not an equivalence) - if ( conv !== true ) { - - // Unless errors are allowed to bubble, catch and return them - if ( conv && s.throws ) { - response = conv( response ); - } else { - try { - response = conv( response ); - } catch ( e ) { - return { - state: "parsererror", - error: conv ? e : "No conversion from " + prev + " to " + current - }; - } - } - } - } - } - } - - return { state: "success", data: response }; -} - -jQuery.extend( { - - // Counter for holding the number of active queries - active: 0, - - // Last-Modified header cache for next request - lastModified: {}, - etag: {}, - - ajaxSettings: { - url: location.href, - type: "GET", - isLocal: rlocalProtocol.test( location.protocol ), - global: true, - processData: true, - async: true, - contentType: "application/x-www-form-urlencoded; charset=UTF-8", - - /* - timeout: 0, - data: null, - dataType: null, - username: null, - password: null, - cache: null, - throws: false, - traditional: false, - headers: {}, - */ - - accepts: { - "*": allTypes, - text: "text/plain", - html: "text/html", - xml: "application/xml, text/xml", - json: "application/json, text/javascript" - }, - - contents: { - xml: /\bxml\b/, - html: /\bhtml/, - json: /\bjson\b/ - }, - - responseFields: { - xml: "responseXML", - text: "responseText", - json: "responseJSON" - }, - - // Data converters - // Keys separate source (or catchall "*") and destination types with a single space - converters: { - - // Convert anything to text - "* text": String, - - // Text to html (true = no transformation) - "text html": true, - - // Evaluate text as a json expression - "text json": JSON.parse, - - // Parse text as xml - "text xml": jQuery.parseXML - }, - - // For options that shouldn't be deep extended: - // you can add your own custom options here if - // and when you create one that shouldn't be - // deep extended (see ajaxExtend) - flatOptions: { - url: true, - context: true - } - }, - - // Creates a full fledged settings object into target - // with both ajaxSettings and settings fields. - // If target is omitted, writes into ajaxSettings. - ajaxSetup: function( target, settings ) { - return settings ? - - // Building a settings object - ajaxExtend( ajaxExtend( target, jQuery.ajaxSettings ), settings ) : - - // Extending ajaxSettings - ajaxExtend( jQuery.ajaxSettings, target ); - }, - - ajaxPrefilter: addToPrefiltersOrTransports( prefilters ), - ajaxTransport: addToPrefiltersOrTransports( transports ), - - // Main method - ajax: function( url, options ) { - - // If url is an object, simulate pre-1.5 signature - if ( typeof url === "object" ) { - options = url; - url = undefined; - } - - // Force options to be an object - options = options || {}; - - var transport, - - // URL without anti-cache param - cacheURL, - - // Response headers - responseHeadersString, - responseHeaders, - - // timeout handle - timeoutTimer, - - // Url cleanup var - urlAnchor, - - // Request state (becomes false upon send and true upon completion) - completed, - - // To know if global events are to be dispatched - fireGlobals, - - // Loop variable - i, - - // uncached part of the url - uncached, - - // Create the final options object - s = jQuery.ajaxSetup( {}, options ), - - // Callbacks context - callbackContext = s.context || s, - - // Context for global events is callbackContext if it is a DOM node or jQuery collection - globalEventContext = s.context && - ( callbackContext.nodeType || callbackContext.jquery ) ? - jQuery( callbackContext ) : - jQuery.event, - - // Deferreds - deferred = jQuery.Deferred(), - completeDeferred = jQuery.Callbacks( "once memory" ), - - // Status-dependent callbacks - statusCode = s.statusCode || {}, - - // Headers (they are sent all at once) - requestHeaders = {}, - requestHeadersNames = {}, - - // Default abort message - strAbort = "canceled", - - // Fake xhr - jqXHR = { - readyState: 0, - - // Builds headers hashtable if needed - getResponseHeader: function( key ) { - var match; - if ( completed ) { - if ( !responseHeaders ) { - responseHeaders = {}; - while ( ( match = rheaders.exec( responseHeadersString ) ) ) { - responseHeaders[ match[ 1 ].toLowerCase() + " " ] = - ( responseHeaders[ match[ 1 ].toLowerCase() + " " ] || [] ) - .concat( match[ 2 ] ); - } - } - match = responseHeaders[ key.toLowerCase() + " " ]; - } - return match == null ? null : match.join( ", " ); - }, - - // Raw string - getAllResponseHeaders: function() { - return completed ? responseHeadersString : null; - }, - - // Caches the header - setRequestHeader: function( name, value ) { - if ( completed == null ) { - name = requestHeadersNames[ name.toLowerCase() ] = - requestHeadersNames[ name.toLowerCase() ] || name; - requestHeaders[ name ] = value; - } - return this; - }, - - // Overrides response content-type header - overrideMimeType: function( type ) { - if ( completed == null ) { - s.mimeType = type; - } - return this; - }, - - // Status-dependent callbacks - statusCode: function( map ) { - var code; - if ( map ) { - if ( completed ) { - - // Execute the appropriate callbacks - jqXHR.always( map[ jqXHR.status ] ); - } else { - - // Lazy-add the new callbacks in a way that preserves old ones - for ( code in map ) { - statusCode[ code ] = [ statusCode[ code ], map[ code ] ]; - } - } - } - return this; - }, - - // Cancel the request - abort: function( statusText ) { - var finalText = statusText || strAbort; - if ( transport ) { - transport.abort( finalText ); - } - done( 0, finalText ); - return this; - } - }; - - // Attach deferreds - deferred.promise( jqXHR ); - - // Add protocol if not provided (prefilters might expect it) - // Handle falsy url in the settings object (#10093: consistency with old signature) - // We also use the url parameter if available - s.url = ( ( url || s.url || location.href ) + "" ) - .replace( rprotocol, location.protocol + "//" ); - - // Alias method option to type as per ticket #12004 - s.type = options.method || options.type || s.method || s.type; - - // Extract dataTypes list - s.dataTypes = ( s.dataType || "*" ).toLowerCase().match( rnothtmlwhite ) || [ "" ]; - - // A cross-domain request is in order when the origin doesn't match the current origin. - if ( s.crossDomain == null ) { - urlAnchor = document.createElement( "a" ); - - // Support: IE <=8 - 11, Edge 12 - 15 - // IE throws exception on accessing the href property if url is malformed, - // e.g. http://example.com:80x/ - try { - urlAnchor.href = s.url; - - // Support: IE <=8 - 11 only - // Anchor's host property isn't correctly set when s.url is relative - urlAnchor.href = urlAnchor.href; - s.crossDomain = originAnchor.protocol + "//" + originAnchor.host !== - urlAnchor.protocol + "//" + urlAnchor.host; - } catch ( e ) { - - // If there is an error parsing the URL, assume it is crossDomain, - // it can be rejected by the transport if it is invalid - s.crossDomain = true; - } - } - - // Convert data if not already a string - if ( s.data && s.processData && typeof s.data !== "string" ) { - s.data = jQuery.param( s.data, s.traditional ); - } - - // Apply prefilters - inspectPrefiltersOrTransports( prefilters, s, options, jqXHR ); - - // If request was aborted inside a prefilter, stop there - if ( completed ) { - return jqXHR; - } - - // We can fire global events as of now if asked to - // Don't fire events if jQuery.event is undefined in an AMD-usage scenario (#15118) - fireGlobals = jQuery.event && s.global; - - // Watch for a new set of requests - if ( fireGlobals && jQuery.active++ === 0 ) { - jQuery.event.trigger( "ajaxStart" ); - } - - // Uppercase the type - s.type = s.type.toUpperCase(); - - // Determine if request has content - s.hasContent = !rnoContent.test( s.type ); - - // Save the URL in case we're toying with the If-Modified-Since - // and/or If-None-Match header later on - // Remove hash to simplify url manipulation - cacheURL = s.url.replace( rhash, "" ); - - // More options handling for requests with no content - if ( !s.hasContent ) { - - // Remember the hash so we can put it back - uncached = s.url.slice( cacheURL.length ); - - // If data is available and should be processed, append data to url - if ( s.data && ( s.processData || typeof s.data === "string" ) ) { - cacheURL += ( rquery.test( cacheURL ) ? "&" : "?" ) + s.data; - - // #9682: remove data so that it's not used in an eventual retry - delete s.data; - } - - // Add or update anti-cache param if needed - if ( s.cache === false ) { - cacheURL = cacheURL.replace( rantiCache, "$1" ); - uncached = ( rquery.test( cacheURL ) ? "&" : "?" ) + "_=" + ( nonce++ ) + uncached; - } - - // Put hash and anti-cache on the URL that will be requested (gh-1732) - s.url = cacheURL + uncached; - - // Change '%20' to '+' if this is encoded form body content (gh-2658) - } else if ( s.data && s.processData && - ( s.contentType || "" ).indexOf( "application/x-www-form-urlencoded" ) === 0 ) { - s.data = s.data.replace( r20, "+" ); - } - - // Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode. - if ( s.ifModified ) { - if ( jQuery.lastModified[ cacheURL ] ) { - jqXHR.setRequestHeader( "If-Modified-Since", jQuery.lastModified[ cacheURL ] ); - } - if ( jQuery.etag[ cacheURL ] ) { - jqXHR.setRequestHeader( "If-None-Match", jQuery.etag[ cacheURL ] ); - } - } - - // Set the correct header, if data is being sent - if ( s.data && s.hasContent && s.contentType !== false || options.contentType ) { - jqXHR.setRequestHeader( "Content-Type", s.contentType ); - } - - // Set the Accepts header for the server, depending on the dataType - jqXHR.setRequestHeader( - "Accept", - s.dataTypes[ 0 ] && s.accepts[ s.dataTypes[ 0 ] ] ? - s.accepts[ s.dataTypes[ 0 ] ] + - ( s.dataTypes[ 0 ] !== "*" ? 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"ajaxSuccess" : "ajaxError", - [ jqXHR, s, isSuccess ? success : error ] ); - } - - // Complete - completeDeferred.fireWith( callbackContext, [ jqXHR, statusText ] ); - - if ( fireGlobals ) { - globalEventContext.trigger( "ajaxComplete", [ jqXHR, s ] ); - - // Handle the global AJAX counter - if ( !( --jQuery.active ) ) { - jQuery.event.trigger( "ajaxStop" ); - } - } - } - - return jqXHR; - }, - - getJSON: function( url, data, callback ) { - return jQuery.get( url, data, callback, "json" ); - }, - - getScript: function( url, callback ) { - return jQuery.get( url, undefined, callback, "script" ); - } -} ); - -jQuery.each( [ "get", "post" ], function( i, method ) { - jQuery[ method ] = function( url, data, callback, type ) { - - // Shift arguments if data argument was omitted - if ( isFunction( data ) ) { - type = type || callback; - callback = data; - data = undefined; - } - - // The url can be an options object (which then must have .url) - return jQuery.ajax( jQuery.extend( { - url: url, - type: method, - dataType: type, - data: data, - success: callback - }, jQuery.isPlainObject( url ) && url ) ); - }; -} ); - - -jQuery._evalUrl = function( url, options ) { - return jQuery.ajax( { - url: url, - - // Make this explicit, since user can override this through ajaxSetup (#11264) - type: "GET", - dataType: "script", - cache: true, - async: false, - global: false, - - // Only evaluate the response if it is successful (gh-4126) - // dataFilter is not invoked for failure responses, so using it instead - // of the default converter is kludgy but it works. - converters: { - "text script": function() {} - }, - dataFilter: function( response ) { - jQuery.globalEval( response, options ); - } - } ); -}; - - -jQuery.fn.extend( { - wrapAll: function( html ) { - var wrap; - - if ( this[ 0 ] ) { - if ( isFunction( html ) ) { - html = html.call( this[ 0 ] ); - } - - // The elements to wrap the target around - wrap = jQuery( html, this[ 0 ].ownerDocument ).eq( 0 ).clone( true ); - - if ( this[ 0 ].parentNode ) { - wrap.insertBefore( this[ 0 ] ); - } - - wrap.map( function() { - var elem = this; - - while ( elem.firstElementChild ) { - elem = elem.firstElementChild; - } - - return elem; - } ).append( this ); - } - - return this; - }, - - wrapInner: function( html ) { - if ( isFunction( html ) ) { - return this.each( function( i ) { - jQuery( this ).wrapInner( html.call( this, i ) ); - } ); - } - - return this.each( function() { - var self = jQuery( this ), - contents = self.contents(); - - if ( contents.length ) { - contents.wrapAll( html ); - - } else { - self.append( html ); - } - } ); - }, - - wrap: function( html ) { - var htmlIsFunction = isFunction( html ); - - return this.each( function( i ) { - jQuery( this ).wrapAll( htmlIsFunction ? 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If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # -# import os -# import sys -# sys.path.insert(0, os.path.abspath('.')) +import os +import sys +from distutils.util import convert_path + +sys.path.insert(0, os.path.abspath('.')) + +# get version: +ns = {} +ver_path = convert_path('../ontolopy/version.py') +with open(ver_path) as ver_file: + exec(ver_file.read(), ns) + +# The full version, including alpha/beta/rc tags +release = f"v{ns['__version__']}" # -- Project information ----------------------------------------------------- -project = 'uberon_py' +project = 'ontolopy' copyright = '2021, Natalie Thurlby' author = 'Natalie Thurlby' -# The full version, including alpha/beta/rc tags -release = '0.1.0' # -- General configuration --------------------------------------------------- @@ -31,6 +40,7 @@ # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ + 'myst_nb' ] # Add any paths that contain templates here, relative to this directory. @@ -47,9 +57,16 @@ # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # -html_theme = 'alabaster' +html_theme = 'pydata_sphinx_theme' + +html_theme_options = { + 'github_url': 'https://github.com/NatalieThurlby/ontolopy', + 'twitter_url': 'https://twitter.com/hashtag/ontolopy', + 'search_bar_text': 'Search this site...', + 'search_bar_position': 'navbar', +} # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". -html_static_path = ['_static'] \ No newline at end of file +html_static_path = ['_static'] diff --git a/docs/contents/changelog.md b/docs/contents/changelog.md new file mode 100644 index 0000000..24b42cd --- /dev/null +++ b/docs/contents/changelog.md @@ -0,0 +1,17 @@ +# Changelog + +[//]: # (TODO: Link to GitHub releases) + +## 1.0.0-beta +- Renamed module to Ontolopy. +- Refactored `Obo()` and `Relations()` class. +- `Obo()` now extends `dict`. +- Added unit tests for `ontolopy.validate_term()` and `ontolopy.read_line_obo()`. +- Added Sphinx documentation, with PyData Sphinx theme. + +## 0.1.0 +- Download `.obo` files: ["sensory-minimal"](http://ontologies.berkeleybop.org/uberon/subsets/sensory-minimal.obo), ["uberon-extended"](http://purl.obolibrary.org/obo/uberon/ext.obo) and ["uberon-basic"](http://purl.obolibrary.org/obo/uberon.obo) +- Load `.obo` files: added `Obo()` class. +- Find relations in ontology terms: added `Relations()` class. +- Continuous Integration using TravisCI +- Released `uberon-py` on pypi diff --git a/docs/contents/contributing.md b/docs/contents/contributing.md new file mode 100644 index 0000000..510bcbc --- /dev/null +++ b/docs/contents/contributing.md @@ -0,0 +1,28 @@ +# Contributing + +[//]: # (TODO: Write about all-contributors) + +## Development + +### Style guide +- We follow the following Python-style naming conventions. + - Packages: lowercase (single word) + - Classes: CamelCase + - Methods, Functions, Variables: snake_case +- Functions with leading underscores (e.g. `_extract_source()`) are meant for internal use only. +- Relative imports should be used at all times, with imports ideally delayed until they are needed. + +## How-tos + +### Start developing +- comment on an existing GitHub issue, or make a new GitHub issue and comment on it, saying what you are planning on working on and when. +- develop on a feature branch, which should branch from the 'dev' branch +- test locally before pushing (run `pytest` at root) to GitHub + +### Install local development version +local development: +`python3 setup.py sdist` +`pip3 install -e .` + +--- +These materials were adapted from the [Bristol RSE team](https://www.bristol.ac.uk/acrc/research-software-engineering/)'s [Metawards Development Guide](https://metawards.org/versions/1.5.1/development.html). \ No newline at end of file diff --git a/docs/contents/installation.md b/docs/contents/installation.md new file mode 100644 index 0000000..f63a180 --- /dev/null +++ b/docs/contents/installation.md @@ -0,0 +1,7 @@ +# Installation + +Ontolopy is available on pip, and can be installed using: + +```bash +pip install ontolopy +``` \ No newline at end of file diff --git a/docs/contents/quickstart.md b/docs/contents/quickstart.md new file mode 100644 index 0000000..5cb976e --- /dev/null +++ b/docs/contents/quickstart.md @@ -0,0 +1,23 @@ +# Quickstart + +[//]: # (TODO: Line too long) +[//]: # (TODO: make myst code-cell so it actually runs) + +```python +import ontolopy + +# read an ontology in obo format +obo = ontolopy.Obo('path_to_file/uberon_ext.obo') + +# find relationships between terms of interest: +# (in this case, are any of the source_terms, is_a or part_of the brain?) +source_terms = ['UBERON:0003290', 'UBERON:0003369', 'UBERON:0003703'] +target_terms = ['UBERON:0000955'] # brain term +relations_of_interest = ['is_a', 'part_of'] +relations = ontolopy.Relations( + source_terms, + target_terms, + relations_of_interest, + obo.ont +).relations +``` diff --git a/docs/images/ontolopy.png b/docs/images/ontolopy.png new file mode 100644 index 0000000000000000000000000000000000000000..f529a564335cdd88636a8ef61e05b65cec2a1bdb GIT binary patch literal 66687 zcmeFZbyQVr_XY~M(G3V}x*O?kq&6TWE!`zu0@95%0us{QB`Mt{-3`*+-E}vf?|jG4 z^Sl4vzwQ{zp*YyW{mUgD3!mZbz*~K_esKOUoCcyiy$SQKohY 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zLgIR%yf<1bpkgs)m<*taq|C^6;LaS}b+ds7K)`l?_JjYyShwr0j7hC}J#3X8~0N6kq#RUS49>0KWOC?9tx_{vR!%_av|{$h(sOTt>Wn z{!gmluez19GeA*x@LV73Kac&rl#i5NEOvb~)k_9{9+FasZ`R|oqS|UE)9A7~a zCJFV47wLsq23;a3T zgdfc!+NHoy z6&E)p8>H=1qRD2=heJp3fXXWA1A8Bx&0I~$OmF8rN?D`p&u6 zpg+T}yK^}BL%{ADu_$WVrn)$i%DkF%{*S{jz)y%VJhc6p2M>SnappLxHQl?4Gai^P zxnKYr_u+L;=7N!fcQYC+Ixa@T3*v8A+e0zeb!xlH2$v-}O!(i0O*d(MDWq4BZ% zB@a3B^NQ@Zl{|9T9tn~l@ literal 0 HcmV?d00001 diff --git a/docs/index.md b/docs/index.md new file mode 100644 index 0000000..bb0cf97 --- /dev/null +++ b/docs/index.md @@ -0,0 +1,18 @@ +# Ontolo**py** + +```{image} images/ontolopy.png +``` + +
+ +Ontolopy is a Python package for manipulating biological ontologies. In particular, it is useful for linking sample metadata to ontologies, leveraging this link to get extra information about samples, grouping samples, etc. + +Ontolopy supports `.obo` files (it does not support `.owl` files). + +```{toctree} +:maxdepth: 2 +:hidden: +contents/installation +contents/quickstart +contents/changelog +``` \ No newline at end of file diff --git a/docs/index.rst b/docs/index.rst deleted file mode 100644 index 16c236b..0000000 --- a/docs/index.rst +++ /dev/null @@ -1,20 +0,0 @@ -.. uberon_py documentation master file, created by - sphinx-quickstart on Sat Jan 30 11:08:30 2021. - You can adapt this file completely to your liking, but it should at least - contain the root `toctree` directive. - -Welcome to uberon_py's documentation! -===================================== - -.. toctree:: - :maxdepth: 2 - :caption: Contents: - - - -Indices and tables -================== - -* :ref:`genindex` -* :ref:`modindex` -* :ref:`search` diff --git a/ontolopy/__init__.py b/ontolopy/__init__.py new file mode 100644 index 0000000..4724ad2 --- /dev/null +++ b/ontolopy/__init__.py @@ -0,0 +1,2 @@ +from .obo import Obo, validate_term, get_obo +from .relations import Relations diff --git a/ontolopy/obo.py b/ontolopy/obo.py new file mode 100644 index 0000000..37886cc --- /dev/null +++ b/ontolopy/obo.py @@ -0,0 +1,261 @@ +import pandas as pd +import numpy as np +import time +import urllib.request as request +import os +import logging +import pprint + + +# TODO: separate into relations and obo files at minimum + +def get_obo(data_name, out_dir='../data/'): + # TODO: load from file: + # TODO: Allow overwrite existing file + # TODO: test + + uberon_urls = { + 'sensory-minimal':'http://ontologies.berkeleybop.org/uberon/subsets/sensory-minimal.obo', + 'uberon-extended': 'http://purl.obolibrary.org/obo/uberon/ext.obo', + 'uberon-basic': 'http://purl.obolibrary.org/obo/uberon.obo', + } + + if data_name not in uberon_urls.keys(): + supported_list = '\n'.join(uberon_urls.keys()) + logging.error(f'`data_name` {data_name} not in supported list:\n{supported_list}') + + url = uberon_urls[data_name] + file_name = (os.path.basename(url)) + out_file = os.path.join(out_dir, file_name) + + if not os.path.isdir(out_dir): + os.mkdir(out_dir) + logging.info(f'Created directory {out_dir}.') + + if os.path.isfile(out_file): + logging.warning(f'File already exists at location: {os.path.abspath(out_file)}. Cancelling download.') + return out_file + + # TODO: make sure behaviour is sensible if url doesn't exist. (Write test). + file_data = request.urlopen(url) + data_to_write = file_data.read() + logging.info(f'Downloaded {data_name} from: {url}') + + with open(out_file, 'wb') as f: + f.write(data_to_write) + + logging.info(f'Wrote {data_name} file to: {os.path.abspath(out_file)}') + return out_file + + +def validate_term(term_text, allowed_ids): + """ + :param term_text: text to validate, e.g. "NCBITaxon:9606" or "UBERON:12391203". + :param allowed_ids: a list of allowed identifier prefixes, e.g. ['GO', 'UBERON'] + :return: bool True=valid, False=not + """ + assert(isinstance(term_text, str)) + assert(isinstance(allowed_ids, list)) + if ':' not in term_text: + return False + elif term_text.split(':')[0] in allowed_ids: + return True + + +def _read_line_obo(line_list, ont_ids): + """ + Reads a line of an obo file, and returns a list of (relation, value) tuples. Most lines will only contain one. + :param line_list: list of line elements (original line split by spaces) + :param ont_ids: allowed ontology ids (list) + :return new_relations: a list of (relation, value) tuples + """ + + assert(isinstance(ont_ids, list)) + assert(isinstance(line_list, list)) + + line_list[0] = line_list[0].replace(':', '') + new_relations = [] # list of (relation, value) tuples. + + if line_list[0] in Obo.text_attributes: + new_relations.append((line_list[0], ' '.join(line_list[1:]))) + + elif line_list[0] in Obo.attributes: + new_relations.append((line_list[0], line_list[1])) + + elif line_list[0] in Obo.nestable_attributes: + if line_list[1] in Obo.relationships: + new_relations.append((line_list[1], line_list[2])) + elif ':' in line_list[1]: + new_relations.append((line_list[0], line_list[1])) + else: + # TODO: Add test + logging.error(f'Unknown relationship {line_list[1]} for value {line_list[2]}, saving as {line_list[0]}.') + + elif line_list[0] == 'synonym': + synonym = (' '.join(line_list)).split('"')[1].lower() + new_relations.append((line_list[0], synonym)) + + rest = ' '.join(line_list[1:]) # rest of line + new_relations += _extract_source(rest, ont_ids) + + elif line_list[0] == 'def': + rest = ' '.join(line_list[1:]) + new_relations.append((line_list[0], rest)) + new_relations += _extract_source(rest, ont_ids) + + elif line_list[0] == 'xref': + if validate_term(line_list[1], ont_ids): + new_relations.append((line_list[0], line_list[1])) + + # TODO: add logging info for unrecognised lines + + return new_relations + + +def _extract_source(text, ont_ids): + """ + In obo files sources are written between square brackets. Currently does not keep URL sources (e.g. wikipedia). + :param text: + :param ont_ids: list of allowed ontology ids , e.g. ['GO', 'HP'] + :return new_relations: list of (relation, value) tuples, e.g. [('xref': 'HP:091231')] + # TODO: also keep urls + # TODO: What kind of relations should sources be? 'xref'? My own, e.g. 'source'/'source.synonym' + """ + new_relations = [] + source_terms = [x.strip() for x in text[text.find("[") + 1:text.find("]")].split(',')] + for source_term in source_terms: + if validate_term(source_term, ont_ids): + new_relations.append((source_term.split(':')[0], source_term)) + return new_relations + + +class Obo(dict): + # TODO: tidy so that all attributes are organised in a dict with type (string, list), acceptable formats, nestable + + strings = [ # must be strings not lists + 'name', + 'id' + ] + + nestable_attributes = [ + 'relationships', + 'intersection_of', + ] + + text_attributes = [ + 'name', + 'comments', + ] + + attributes = [ + 'id', + 'alt_id', + 'is_a', + 'subset', + 'union_of', + 'namespace', + 'consider', + ] + relationships = [ + 'derives_from', + 'is_model_for', + 'develops_from', + 'part_of', + 'never_in_taxon', + 'present_in_taxon', + 'only_in_taxon', + 'dubious_for_taxon', + ] + + def __init__(self, file_loc, ont_ids, root_terms=None, discard_obsolete=True): + """ + Loads ontology from obo file into a dictionary of dictionaries. + + Attributes: + file_loc: file location of obo (.obo file) + # TODO: include other attributes + """ + self.file_loc = file_loc + self.ont_ids = ont_ids + self.root_terms = root_terms + self.discard_obsolete = discard_obsolete + self.load_obo() + + # TODO: Write __str__ and __repr__ + + def load_obo(self): + """ + Loads ontology from obo file into a dictionary of dictionaries. + + """ + # TODO: check for version/date of ontology file and save if possible + # terms = {} + with open(self.file_loc) as f: + term = {} + for i, line in enumerate(f): + line = line.strip() + line = line.strip().split(' ') + + if '[Term]' in line[0]: + if len(term) > 0 and 'id' in term.keys(): + if 'comment' in term.keys() and 'obsolete' in term['comment'].lower() and self.discard_obsolete: + logging.info(f"term {term['id']}: {term['name']} is obsolete. Discarding.") + term = {} + continue + elif term['id'].split(':')[0] in self.ont_ids: + self[term['id']] = term + term = {} + + new_relations = _read_line_obo(line, self.ont_ids) + for (relation, value) in new_relations: + if relation in self.strings: + term[relation] = value + continue + try: + term[relation].append(value) + except KeyError: + term[relation] = [value] + + return self + + def map_tissue_name_to_uberon(self, design_df, tissue_name_column): + # TODO: Make an UBERON class that is a child of Ontolgy + """Assumes that the sample name is the index of the design_df""" + samples_names = design_df[[tissue_name_column]].dropna() + + name2uberon = [] + for sample_id, row in samples_names.iterrows(): + tissue_name = row[tissue_name_column] + found = False + tissue_name = tissue_name.lower() + for uberon_term in self.ont.keys(): + try: + synonyms = self.ont[uberon_term]['synonyms'] + except: + synonyms = [] + if (self.ont[uberon_term]['name'].lower() == tissue_name) or (tissue_name in synonyms): + name2uberon.append([sample_id, uberon_term, tissue_name]) + found = True + if not found: + name2uberon.append([sample_id, None, tissue_name]) + + name2uberon = pd.DataFrame(name2uberon, columns=['Sample ID', 'UBERON', 'name matched on']) + name2uberon = name2uberon.set_index('Sample ID') + return name2uberon + + def get_relations(self, relations_of_interest, source_terms, target_term, ont): + """ + get_relations finds all relationships (based on relations_of_interest e.g. ['is_a']) between terms like source_term and terms like target_term, e.g. source_term is_a target_term. Returns a mapping between term and most specific (least number of steps) relationstring (if one exists, else NaN) for each relevant term in the ontology. + + Args: + relations_of_interest: a list of relations that are relevant for finding relationship between the source and target term, e.g. ['is_a','is_model_for'] + source_terms: terms that we wish to look for relations from, list of the form [source_term_1, source_term_2, etc] such that we wish to find relationships of the form "source_term is_a target_term" or "source_term is_a other_term is_a target_term". + target_term: term that we wish to look for relations to, e.g. source_term is_a target_term. Term string, either specific (e.g. 'FF:0000001') or general (e.g. 'FF') + + Returns: + Relations class object, containing relations (see relations class for details), relations_of_interest, source_term and target_term + + """ + return self.Relations(relations_of_interest,source_terms,target_term,ont) + + diff --git a/ontolopy/relations.py b/ontolopy/relations.py new file mode 100644 index 0000000..238a53e --- /dev/null +++ b/ontolopy/relations.py @@ -0,0 +1,110 @@ +import time +import logging +import numpy as np +import pandas as pd + + +def relation_string_to_text(ont, relation_string): + """ + Converts from a relation string e.g. "UBERON:123913.is_a_UBERON:1381239" to a text version, + e.g. "heart is a circulatory organ". + :param ont: + :param relation_string: + :return: + """ + for i, sub_relation in enumerate(relation_string.split('.')): + if i == 0: + name_string = ont[sub_relation]['name'] + continue + relation = ' "' + '_'.join(sub_relation.split('_')[:-1]) + '" ' + term = sub_relation.split('_')[-1] + + name_string += relation + ont[term]['name'] + return name_string + + +class Relations: + def __init__(self, relations_of_interest, source_terms, target_term, ont, excluded_terms=None, print_=False): + """ + Attributes: + relations_of_interest: a list of relations that are relevant for finding relationship between the source + and target term, e.g. ['is_a','is_model_for'] + source_terms: terms that we wish to look for relations from, list of the form [source_term_1, source_term_2, + etc] such that we wish to find relationships of the form "source_term is_a target_term" or "source_term + is_a other_term is_a target_term". + target_term: term that we wish to look for relations to, e.g. source_term is_a target_term. Term string, + either specific (e.g. 'FF:0000001') or general (e.g. 'FF') + ont: Obo().ont object + + """ + # TODO: change _print, so that we just have logging.info of those levels. + self.relations_of_interest = relations_of_interest + self.source_terms = source_terms + self.target_term = target_term + if not excluded_terms: + excluded_terms = [] + self.excluded_terms = excluded_terms + self.relations = self.calculate(ont, print_) + + def calculate(self, ont, print_): + # TODO: write how this works. + relations = [] + for source_term in self.source_terms: + relation_strings = [source_term] + + # we stop looking for a term, once we find a relation to the target_term or we we don't know where else to look: + relation_found = False + unchanged = False + + while (not relation_found) and (not unchanged): + if print_: + time.sleep(0.2) + print(relation_strings) + new_relation_strings = [] + for relation_string in relation_strings: + most_recent_term = relation_string.split('_')[-1] + for relation in self.relations_of_interest: + # Get new terms to check. + try: + new_terms = ont[most_recent_term][relation] + except: + new_terms = [] + + # For each new term, check for wanted relation. + for new_term in new_terms: + if new_term in self.excluded_terms: + continue + + if new_term in relation_string: + logging.info(f'cyclic relationship: {relation_string}.{relation}_{new_term}') + continue + new_relation_string = relation_string + '.' + relation + '_' + new_term + new_relation_strings.append(new_relation_string) + + # CHECK IF NEW TERM IS (ONE OF) TARGET TERM(S) + # if target_term is list of specific terms: + if isinstance(self.target_term, list) and (new_term in self.target_term): + relation_found = True + # if target_term is one specific term + elif (':' in self.target_term) and (self.target_term == new_term): + relation_found = True + break + # if term is general: + elif new_term.split(':')[0] == self.target_term: + relation_found = True + break + if relation_found: + break + if relation_found: + break + + if len(new_relation_strings) == 0: + unchanged = True + relation_strings = new_relation_strings + + if relation_found: + relations.append(new_relation_string) + else: + relations.append(np.nan) + + return pd.DataFrame(relations, index=self.source_terms) \ No newline at end of file diff --git a/ontolopy/version.py b/ontolopy/version.py new file mode 100644 index 0000000..2c5adde --- /dev/null +++ b/ontolopy/version.py @@ -0,0 +1 @@ +__version__ = "1.0.0-beta" \ No newline at end of file diff --git a/pytest.ini b/pytest.ini new file mode 100644 index 0000000..886ac79 --- /dev/null +++ b/pytest.ini @@ -0,0 +1,8 @@ +[pytest] +markers = + webtest: mark a test as a webtest. + slow: mark test as slow. + download: mark as doing a download. + +testpaths = + tests \ No newline at end of file diff --git a/requirements-dev.txt b/requirements-dev.txt index e9eb009..79816f8 100644 --- a/requirements-dev.txt +++ b/requirements-dev.txt @@ -1,3 +1,4 @@ setuptools sphinx -pytest \ No newline at end of file +pytest +pydata-sphinx-theme diff --git a/setup.py b/setup.py index 21d95be..4ab2624 100644 --- a/setup.py +++ b/setup.py @@ -1,14 +1,29 @@ -from setuptools import setup - -long_description = open('README.md').read() - -setup(name='uberon_py', - packages=['uberon_py'], - version='0.1.0', - description='`uberon_py` is a package for querying the Uberon ontology from python.', +from setuptools import setup, find_packages +from distutils.util import convert_path + +long_description = open('README.md', 'r').read() + +# get version: +ns = {} +ver_path = convert_path('ontolopy/version.py') +with open(ver_path) as ver_file: + exec(ver_file.read(), ns) + +setup(name='ontolopy', + version=ns['__version__'], + install_requires=[ + 'pandas', + 'numpy', + ], + description='Ontolopy is a package for working with ontology (.obo) files from Python.', long_description_content_type='text/markdown', long_description=long_description, - url='https://github.com/NatalieThurlby/uberon-py', - author='Natlie Thurlby', + packages=find_packages(), + url='https://github.com/NatalieThurlby/ontolopy', + author='Natalie Thurlby', + classifiers=[ + "Programming Language :: Python :: 3", + ], + python_requires='>=3.6', author_email='natalie.thurlby@bristol.ac.uk', license='MIT') diff --git a/tests/basic_test.py b/tests/basic_test.py index 5866e84..958de80 100644 --- a/tests/basic_test.py +++ b/tests/basic_test.py @@ -1,21 +1,65 @@ -import sys -sys.path.append('../') -sys.path.append('.') -from uberon_py import obo +import ontolopy as opy +import pytest +import os +import logging + +data_dir = os.path.join(os.path.dirname(os.path.abspath(__file__)), 'data') + +@pytest.mark.download +def test_download_obo(): + # TODO: Test not allowed names + # TODO: Delete before trying and check that works + # TODO: Don't delete before trying and check logging input correct + opy.get_obo('uberon-basic', out_dir=data_dir) # TODO: sys.path stuff shouldn't be happening -def test_basic(): +@pytest.mark.download +def test_end_to_end(): + pass + # TODO: write a new end-to-end test + # TODO: tests marked download will only run with `pytest --download`. Think about when to run. # Tests downloading data: - out_file = obo.get_obo('sensory-minimal', out_dir='data/') - # Tests loading OBO into obo object: - obo_object = obo.Obo(out_file, ['UBERON']) - # Get relations between UBERON entities: - relations_of_interest = ['is_a', 'part_of'] - source_terms = ['UBERON:0007622'] # "pecten oculi" - target_term = ['UBERON:0000047'] # "simple eye" - ont = obo_object.ont - _ = obo_object.Relations(relations_of_interest, source_terms, target_term, ont) - - -# TODO: Add test of in-built obo links \ No newline at end of file + # out_file = obo.get_obo('sensory-minimal', out_dir='data/') + # # Tests loading OBO into obo object: + # obo_object = obo.Obo(out_file, ['UBERON']) + # # Get relations between UBERON entities: + # relations_of_interest = ['is_a', 'part_of'] + # source_terms = ['UBERON:0007622'] # "pecten oculi" + # target_term = ['UBERON:0000047'] # "simple eye" + # ont = obo_object.ont + # _ = obo_object.Relations(relations_of_interest, source_terms, target_term, ont) + + +# TODO Add test for relations.relation_string_2_name_string + + +def test_obo_dict(): + basic_obo = os.path.join(data_dir, 'uberon.obo') + ont = opy.Obo(file_loc=basic_obo, ont_ids=['UBERON']) + assert(isinstance(ont.keys(), type({}.keys()))) + + +def test_validate_term(): + assert(opy.validate_term(term_text='UBERON:13291823', allowed_ids=['UBERON'])) + assert(opy.validate_term(term_text='GO:1', allowed_ids=['GO', 'UBERON'])) + assert(not opy.validate_term(term_text='GO:13291823', allowed_ids=['UBERON'])) + assert(not opy.validate_term(term_text='UBERON', allowed_ids=['UBERON'])) + + +def test_read_line_obo(): + ont_ids = ['NCBITaxon', 'UBERON'] + + lines = { + 'id: UBERON:0000172': [('id', 'UBERON:0000172')], + 'synonym: "subpallium" NARROW [BTO:0003401, NCBITaxon:8782]': + [('synonym', 'subpallium'), ('NCBITaxon', 'NCBITaxon:8782')] + + } + for line, output in lines.items(): + line_list = line.split(' ') + try: + assert(opy.obo._read_line_obo(line_list, ont_ids) == output) + except AssertionError: + print(opy.obo._read_line_obo(line_list, ont_ids), output) + raise diff --git a/uberon_py/__init__.py b/uberon_py/__init__.py deleted file mode 100644 index e69de29..0000000 diff --git a/uberon_py/obo.py b/uberon_py/obo.py deleted file mode 100644 index 1d00ccd..0000000 --- a/uberon_py/obo.py +++ /dev/null @@ -1,359 +0,0 @@ -import pandas as pd -import numpy as np -import time -import urllib.request as request -import os -import logging -# TODO: Add warnings/logging (remove all print statements) - - -def get_obo(data_name, out_dir='../data/'): - # TODO: load from file: - # TODO: Allow overwrite existing file - - uberon_urls = { - 'sensory-minimal':'http://ontologies.berkeleybop.org/uberon/subsets/sensory-minimal.obo', - 'uberon-extended': 'http://purl.obolibrary.org/obo/uberon/ext.obo', - 'uberon-basic': 'http://purl.obolibrary.org/obo/uberon.obo', - } - - if data_name not in uberon_urls.keys(): - supported_list = '\n'.join(uberon_urls.keys()) - logging.error(f'`data_name` {data_name} not in supported list:\n{supported_list}') - - url = uberon_urls[data_name] - file_name = (os.path.basename(url)) - out_file = os.path.join(out_dir, file_name) - - if not os.path.isdir(out_dir): - os.mkdir(out_dir) - logging.info(f'Created directory {out_dir}.') - - if os.path.isfile(out_file): - logging.warning(f'File already exists at location: {os.path.abspath(out_file)}. Cancelling download.') - return out_file - - # TODO: make sure behaviour is sensible if url doesn't exist. (Write test). - file_data = request.urlopen(url) - data_to_write = file_data.read() - logging.info(f'Downloaded {data_name} from: {url}') - - with open(out_file, 'wb') as f: - f.write(data_to_write) - - logging.info(f'Wrote {data_name} file to: {os.path.abspath(out_file)}') - return out_file - - -class Obo: - def __init__(self, file_loc, ont_ids, root_terms=None): - """ - Loads ontology from obo file into a dictionary of dictionaries. - - Attributes: - file_loc: file location of obo (.obo file) - ont: ontology dictionary of dictionaries of lists of related term IDs (1st level keys = term IDs, 2nd level keys = relationships) - """ - self.file_loc = file_loc - self.ont_ids = ont_ids - self.ont = self.load_obo() - self.root_terms = root_terms - - def load_obo(self): - """ - Loads ontology from obo file into a dictionary of dictionaries. - - """ - terms = {} - with open(self.file_loc) as f: - term = {} - for i, line in enumerate(f): - line = line.strip() - - relation = None - value = None - line = line.strip().split(' ') - if '[Term]' in line[0]: - if len(term)>0 and 'id' in term.keys(): - if 'comment' in term.keys() and 'obsolete' in term['comment'].lower(): - # print 'term ' + term['id'] + ': ' + term['name'] + ' is obsolete.' - term = {} - continue - elif term['id'].split(':')[0] in self.ont_ids: - terms[term['id']] = term - term = {} - - elif 'id:' in line[0] and 'alt_id:' not in line[0]: - ID = line[1] - term['id'] = ID - - elif line[0] == 'name:': - name = ' '.join(line[1:]) - term['name'] = name - - elif 'comment:' in line[0]: - comment = ' '.join(line[1:]) - term['comment'] = comment - - elif 'namespace:' in line[0]: - term['namespace'] = line[1] - - elif 'def:' in line[0]: - restOfLine = ' '.join(line[1:]) - sources = restOfLine[restOfLine.find('[')+1:restOfLine.find(']')].split(',') - - for source in sources: - for ontIdentifier in self.ont_ids: - if ontIdentifier+':' in source: - relation = ontIdentifier - value = source - - elif 'consider:' in line[0]: - for ontID in self.ont_ids: - if ontID+':' in line[1]: - relation = ontID - value = line[1] - - elif line[0] == 'is_a:': - relation = 'is_a' - value = line[1] - - elif line[0] == 'relationship:': - # TODO: tidy this the hell up - - if line[1] == 'derives_from': - relation = 'derives_from' - value = line[2] - - elif line[1] == 'is_model_for': - relation = 'is_model_for' - value = line[2] - - elif line[1] == 'develops_from': - relation = 'develops_from' - value = line[2] - - elif line[1] == 'part_of': - relation = 'part_of' - value = line[2] - - elif line[1] == 'never_in_taxon': - relation = 'never_in_taxon' - value = line[2] - - elif line[1] == 'present_in_taxon': - relation = 'present_in_taxon' - value = line[2] - - elif line[1] == 'only_in_taxon': - relation = 'only_in_taxon' - value = line[2] - - elif line[1] == 'dubious_for_taxon': - relation = 'dubious_for_taxon' - value = line[2] - - else: - # TODO: add logging here - relation = 'related_to' - value = line[2] - - elif line[0] == 'subset:': - relation = 'subset' - value=line[1] - - elif line[0] == 'intersection_of:': - if line[1] == 'part_of': - value = line[2] - relation = 'part_of' - - elif line[1] == 'develops_from': - relation = 'develops_from' - value = line[2] - - elif line[1] == 'derives_from': - relation = 'derives_from' - value = line[2] - - else: - relation = 'intersection_of' - value = line[1] - - elif line[0] == 'union_of:': - relation = 'union_of' - value = line[1] - - elif line[0] == 'synonym:': - synonym = (' '.join(line)).split('"')[1] - - try: - term['synonyms'].append(synonym.lower()) - except: - term['synonyms'] = [synonym.lower()] - restOfLine = ' '.join(line[1:]) - for ontID in self.ont_ids: - if ontID in restOfLine: - ontTerms =restOfLine[restOfLine.find("[")+1:restOfLine.find("]")] - ontTerms = ontTerms.split(',') - for ontTerm in ontTerms: - ontTerm = ontTerm.replace(' ','') - if ontID+':' not in ontTerm: - continue - relation = ontID - value = ontTerm - - elif line[0] == 'xref:': - for ontID in self.ont_ids: - if ontID in line[1]: - relation = ontID - value = line[1] - - if relation is not None and value is not None: - - try: - term[relation].append(value) - except: - term[relation] = [value] - - for ontID in self.ont_ids: - if ontID in value: - try: - term[ontID].append(value) - except: - term[ontID] = [value] - return terms - - def map_tissue_name_to_uberon(self, design_df, tissue_name_column): - # TODO: Make an UBERON class that is a child of Ontolgy - """Assumes that the sample name is the index of the design_df""" - samples_names = design_df[[tissue_name_column]].dropna() - - name2uberon = [] - for sample_id, row in samples_names.iterrows(): - tissue_name = row[tissue_name_column] - found = False - tissue_name = tissue_name.lower() - for uberon_term in self.ont.keys(): - try: - synonyms = self.ont[uberon_term]['synonyms'] - except: - synonyms = [] - if (self.ont[uberon_term]['name'].lower() == tissue_name) or (tissue_name in synonyms): - name2uberon.append([sample_id, uberon_term, tissue_name]) - found = True - if not found: - name2uberon.append([sample_id, None, tissue_name]) - - name2uberon = pd.DataFrame(name2uberon, columns=['Sample ID', 'UBERON', 'name matched on']) - name2uberon = name2uberon.set_index('Sample ID') - return name2uberon - - def get_relations(self, relations_of_interest, source_terms, target_term, ont): - """ - get_relations finds all relationships (based on relations_of_interest e.g. ['is_a']) between terms like source_term and terms like target_term, e.g. source_term is_a target_term. Returns a mapping between term and most specific (least number of steps) relationstring (if one exists, else NaN) for each relevant term in the ontology. - - Args: - relations_of_interest: a list of relations that are relevant for finding relationship between the source and target term, e.g. ['is_a','is_model_for'] - source_terms: terms that we wish to look for relations from, list of the form [source_term_1, source_term_2, etc] such that we wish to find relationships of the form "source_term is_a target_term" or "source_term is_a other_term is_a target_term". - target_term: term that we wish to look for relations to, e.g. source_term is_a target_term. Term string, either specific (e.g. 'FF:0000001') or general (e.g. 'FF') - - Returns: - Relations class object, containing relations (see relations class for details), relations_of_interest, source_term and target_term - - """ - return self.Relations(relations_of_interest,source_terms,target_term,ont) - - -def relation_string_2_name_string(ont, relation_string): - for i, subrelation in enumerate(relation_string.split('.')): - if i == 0: - name_string = ont[subrelation]['name'] - continue - relation = ' "' + '_'.join(subrelation.split('_')[:-1]) + '" ' - term = subrelation.split('_')[-1] - - name_string += relation + ont[term]['name'] - return name_string - - -class Relations: - def __init__(self, relations_of_interest, source_terms, target_term, ont, excluded_terms=None, print_=False): - """ - Attributes: - relations_of_interest: a list of relations that are relevant for finding relationship between the source and target term, e.g. ['is_a','is_model_for'] - source_terms: terms that we wish to look for relations from, list of the form [source_term_1, source_term_2, etc] such that we wish to find relationships of the form "source_term is_a target_term" or "source_term is_a other_term is_a target_term". - target_term: term that we wish to look for relations to, e.g. source_term is_a target_term. Term string, either specific (e.g. 'FF:0000001') or general (e.g. 'FF') - relations: pandas dataframe with source_terms as index and relation_strings (or NaN) in relation_string column. - """ - # TODO: change _print, so that we just have logging.info of those levels. - self.relations_of_interest = relations_of_interest - self.source_terms = source_terms - self.target_term = target_term - if not excluded_terms: - excluded_terms = [] - self.excluded_terms = excluded_terms - self.relations = self.calculate(ont, print_) - - def calculate(self, ont, print_): - # TODO: write how this works. - relations = [] - for source_term in self.source_terms: - relation_strings =[source_term] - - #we stop looking for a term, once we find a relation to the target_term or we we don't know where else to look: - relation_found = False - unchanged = False - - while (not relation_found) and (not unchanged): - if print_: - time.sleep(0.2) - print(relation_strings) - new_relation_strings = [] - for relation_string in relation_strings: - most_recent_term = relation_string.split('_')[-1] - for relation in self.relations_of_interest: - #Get new terms to check. - try: - new_terms = ont[most_recent_term][relation] - except: - new_terms = [] - - #For each new term, check for wanted relation. - for new_term in new_terms: - if new_term in self.excluded_terms: - continue - - if new_term in relation_string: - logging.info(f'cyclic relationship: {relation_string}.{relation}_{new_term}') - continue - new_relation_string = relation_string + '.' + relation + '_' + new_term - new_relation_strings.append(new_relation_string) - - # CHECK IF NEW TERM IS (ONE OF) TARGET TERM(S) - #if target_term is list of specific terms: - if isinstance(self.target_term,list) and (new_term in self.target_term): - relation_found = True - #if target_term is one specific term - elif (':' in self.target_term) and (self.target_term == new_term): - relation_found = True - break - #if term is general: - elif new_term.split(':')[0] == self.target_term: - relation_found = True - break - if relation_found: - break - if relation_found: - break - - if len(new_relation_strings) == 0: - unchanged = True - relation_strings = new_relation_strings - - if relation_found: - relations.append(new_relation_string) - else: - relations.append(np.nan) - - return pd.DataFrame(relations, index=self.source_terms) - From 3d89515cefb348b51e23a52f032e3192e14910e4 Mon Sep 17 00:00:00 2001 From: Natalie Thurlby Date: Sun, 28 Mar 2021 14:45:16 +0100 Subject: [PATCH 05/21] minor tidying --- docs/contents/quickstart.md | 1 - ontolopy/obo.py | 2 -- requirements-dev.txt | 1 + 3 files changed, 1 insertion(+), 3 deletions(-) diff --git a/docs/contents/quickstart.md b/docs/contents/quickstart.md index 5cb976e..8f08697 100644 --- a/docs/contents/quickstart.md +++ b/docs/contents/quickstart.md @@ -1,6 +1,5 @@ # Quickstart -[//]: # (TODO: Line too long) [//]: # (TODO: make myst code-cell so it actually runs) ```python diff --git a/ontolopy/obo.py b/ontolopy/obo.py index 37886cc..3b7e27c 100644 --- a/ontolopy/obo.py +++ b/ontolopy/obo.py @@ -1,6 +1,4 @@ import pandas as pd -import numpy as np -import time import urllib.request as request import os import logging diff --git a/requirements-dev.txt b/requirements-dev.txt index 79816f8..0338637 100644 --- a/requirements-dev.txt +++ b/requirements-dev.txt @@ -2,3 +2,4 @@ setuptools sphinx pytest pydata-sphinx-theme +twine \ No newline at end of file From a7809f2d59bfcf59fafc83a88234551f3a726e97 Mon Sep 17 00:00:00 2001 From: Natalie Thurlby Date: Sun, 28 Mar 2021 16:08:45 +0100 Subject: [PATCH 06/21] drafted assemble_website script --- assemble_website.py | 37 +++++++++++++++++++++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 assemble_website.py diff --git a/assemble_website.py b/assemble_website.py new file mode 100644 index 0000000..77f4a0b --- /dev/null +++ b/assemble_website.py @@ -0,0 +1,37 @@ +import git +from distutils.util import convert_path +from distutils import dir_util +import logging + +# Get branch name, version number, and tag +repo = git.Repo('.') +branch_name = repo.active_branch.name + +ns = {} +ver_path = convert_path('ontolopy/version.py') +with open(ver_path) as ver_file: + exec(ver_file.read(), ns) +version = ns['__version__'] + +tagged = next((tag for tag in repo.tags if tag.commit == repo.head.commit), None) + +# Check that we have a correctly tagged release on the main branch. +if not tagged: + logging.error("This branch is not tagged.") +if tagged.name != version: + logging.error(f"Tag name ({tagged.name}) and version ({version}) do not match.") +if branch_name != "main": + logging.error(f"We only deploy docs of releases to the main branch. You're on branch: {branch_name}") + +# Copy already built files into gh-pages version +branch_names = [x.name for x in repo.branches] +if 'gh-pages' not in branch_names: + logging.error("No branch named gh-pages!") + +try: + repo.git.checkout('gh-pages') + repo.git.checkout('doc/build/html/', 'main') + dir_util.copy_tree("doc/build/html/", f"versions/{version}/") +except: + print("failed") + From 848030a54eb7e1e5f85bcf61807147cae6c566bd Mon Sep 17 00:00:00 2001 From: Natalie Thurlby Date: Sun, 28 Mar 2021 16:09:15 +0100 Subject: [PATCH 07/21] minor edits --- docs/contents/contributing.md | 12 ++++++++++++ requirements-dev.txt | 3 ++- 2 files changed, 14 insertions(+), 1 deletion(-) diff --git a/docs/contents/contributing.md b/docs/contents/contributing.md index 510bcbc..c74e5c4 100644 --- a/docs/contents/contributing.md +++ b/docs/contents/contributing.md @@ -24,5 +24,17 @@ local development: `python3 setup.py sdist` `pip3 install -e .` +## Release +- Once there is a working version on `main`: + - edit the drafted release, filling in the checklist + - make sure that you have filled out the changelog + - via GitHub, tag the release with the same version number as the number in `ontolopy/version.py` + - this will automatically run a GitHub action that distributes the package on pypi and stores a version of the docs that will remain available. + +## Our GitHub Actions +[//]: # (TODO: fill in other GH actions) +We use GitHub Actions to automate updating the docs, running tests, and distributing the package: +- `deploy-site.yml`: deploys docs (latest) when changes are pushed/pulled into `main`. + --- These materials were adapted from the [Bristol RSE team](https://www.bristol.ac.uk/acrc/research-software-engineering/)'s [Metawards Development Guide](https://metawards.org/versions/1.5.1/development.html). \ No newline at end of file diff --git a/requirements-dev.txt b/requirements-dev.txt index 0338637..027ee52 100644 --- a/requirements-dev.txt +++ b/requirements-dev.txt @@ -2,4 +2,5 @@ setuptools sphinx pytest pydata-sphinx-theme -twine \ No newline at end of file +twine +git \ No newline at end of file From 4dd7a77ec43996052032d3ced20b10e8cd6022ae Mon Sep 17 00:00:00 2001 From: Natalie Thurlby Date: Sun, 28 Mar 2021 17:45:54 +0100 Subject: [PATCH 08/21] Made sphinx extension to copy tagged versions of docs to versions directory --- assemble_website.py | 37 ------------------ docs/_ext/versioned-tagged-docs.py | 61 ++++++++++++++++++++++++++++++ docs/conf.py | 9 +++-- 3 files changed, 66 insertions(+), 41 deletions(-) delete mode 100644 assemble_website.py create mode 100644 docs/_ext/versioned-tagged-docs.py diff --git a/assemble_website.py b/assemble_website.py deleted file mode 100644 index 77f4a0b..0000000 --- a/assemble_website.py +++ /dev/null @@ -1,37 +0,0 @@ -import git -from distutils.util import convert_path -from distutils import dir_util -import logging - -# Get branch name, version number, and tag -repo = git.Repo('.') -branch_name = repo.active_branch.name - -ns = {} -ver_path = convert_path('ontolopy/version.py') -with open(ver_path) as ver_file: - exec(ver_file.read(), ns) -version = ns['__version__'] - -tagged = next((tag for tag in repo.tags if tag.commit == repo.head.commit), None) - -# Check that we have a correctly tagged release on the main branch. -if not tagged: - logging.error("This branch is not tagged.") -if tagged.name != version: - logging.error(f"Tag name ({tagged.name}) and version ({version}) do not match.") -if branch_name != "main": - logging.error(f"We only deploy docs of releases to the main branch. You're on branch: {branch_name}") - -# Copy already built files into gh-pages version -branch_names = [x.name for x in repo.branches] -if 'gh-pages' not in branch_names: - logging.error("No branch named gh-pages!") - -try: - repo.git.checkout('gh-pages') - repo.git.checkout('doc/build/html/', 'main') - dir_util.copy_tree("doc/build/html/", f"versions/{version}/") -except: - print("failed") - diff --git a/docs/_ext/versioned-tagged-docs.py b/docs/_ext/versioned-tagged-docs.py new file mode 100644 index 0000000..9cee5c0 --- /dev/null +++ b/docs/_ext/versioned-tagged-docs.py @@ -0,0 +1,61 @@ +import git +from distutils.util import convert_path +import logging +import os +import shutil + + +def copy_to_version(app, exception): + """ + + :param app: + :param exception: + :return: + """ + + # Get branch name, version number, and tag + git_root = os.path.dirname(os.path.dirname(os.path.dirname(os.path.abspath(app.outdir)))) + repo = git.Repo(git_root) + branch_name = repo.active_branch.name + + ns = {} + ver_path = convert_path(os.path.join(git_root, 'ontolopy/version.py')) + with open(ver_path) as ver_file: + exec(ver_file.read(), ns) + version = ns['__version__'] + + tagged = next((tag for tag in repo.tags if tag.commit == repo.head.commit), None) + if not tagged: + tag_name = None + else: + tag_name = tagged.name + + # Check that we have a correctly tagged release on the main branch. + if branch_name not in ["main", "dev"]: + logging.warning(f"On branch {branch_name}. Not saving versioned docs.") + return None + if branch_name == 'main' and not tagged: + logging.warning("On branch main, but it is not tagged. Not saving versioned docs.") + return None + elif branch_name == 'main' and tagged and (tag_name != version): + logging.error(f"Tag name ({tag_name}) and version ({version}) do not match.") + + # Copy built files to version dir + logging.info(f"Copying built files to version directory for branch {branch_name}, tag {tag_name}.") + if branch_name == 'main': + version_dir = os.path.join(app.outdir, f'versions/{version}/') + elif branch_name == 'dev': + version_dir = os.path.join(app.outdir, f'versions/{branch_name}/') + + if not os.path.exists(version_dir): + shutil.copytree(app.outdir, version_dir, ignore=shutil.ignore_patterns('versions')) + else: + os.system(f'rm -r {version_dir}') + shutil.copytree(app.outdir, version_dir, ignore=shutil.ignore_patterns('versions')) + + # TODO: build json + + +def setup(app): + app.connect('build-finished', copy_to_version) + diff --git a/docs/conf.py b/docs/conf.py index e0e7ba7..a047ace 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -26,20 +26,21 @@ # The full version, including alpha/beta/rc tags release = f"v{ns['__version__']}" +sys.path.append(os.path.abspath("./_ext")) +extensions = ['versioned-tagged-docs'] + # -- Project information ----------------------------------------------------- project = 'ontolopy' copyright = '2021, Natalie Thurlby' author = 'Natalie Thurlby' - - # -- General configuration --------------------------------------------------- # Add any Sphinx extension module names here, as strings. They can be -# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom +# extensions coming with Sphinx (named 'sphinx._ext.*') or your custom # ones. -extensions = [ +extensions += [ 'myst_nb' ] From ecbb391d928c6eeee7cdd42a5750a91d1b1913b5 Mon Sep 17 00:00:00 2001 From: Natalie Thurlby Date: Sun, 28 Mar 2021 18:37:32 +0100 Subject: [PATCH 09/21] Add how-to build local docs --- docs/contents/contributing.md | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/docs/contents/contributing.md b/docs/contents/contributing.md index c74e5c4..885f278 100644 --- a/docs/contents/contributing.md +++ b/docs/contents/contributing.md @@ -24,6 +24,10 @@ local development: `python3 setup.py sdist` `pip3 install -e .` +## Build local docs +`cd docs` +`sphinx-build . _build/html` + ## Release - Once there is a working version on `main`: - edit the drafted release, filling in the checklist From 5e4f74007e20a5a654847bfb43a436e6169b37f5 Mon Sep 17 00:00:00 2001 From: Natalie Thurlby Date: Sun, 28 Mar 2021 18:40:35 +0100 Subject: [PATCH 10/21] typo git->gitpython --- requirements-dev.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements-dev.txt b/requirements-dev.txt index 027ee52..f1cb6bc 100644 --- a/requirements-dev.txt +++ b/requirements-dev.txt @@ -3,4 +3,4 @@ sphinx pytest pydata-sphinx-theme twine -git \ No newline at end of file +gitpython \ No newline at end of file From 3fcce8a84bbe7ac2ed6a1a63704284587a09a15f Mon Sep 17 00:00:00 2001 From: Natalie Thurlby Date: Sun, 28 Mar 2021 18:42:14 +0100 Subject: [PATCH 11/21] Added myst-nb --- requirements-dev.txt | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/requirements-dev.txt b/requirements-dev.txt index f1cb6bc..78c85b3 100644 --- a/requirements-dev.txt +++ b/requirements-dev.txt @@ -3,4 +3,5 @@ sphinx pytest pydata-sphinx-theme twine -gitpython \ No newline at end of file +gitpython +myst-nb \ No newline at end of file From 3a2fed4384175a10b02762683d8803546460421b Mon Sep 17 00:00:00 2001 From: Natalie Thurlby Date: Sun, 28 Mar 2021 18:46:21 +0100 Subject: [PATCH 12/21] Update gitignore --- .gitignore | 1 - 1 file changed, 1 deletion(-) diff --git a/.gitignore b/.gitignore index 23f3455..14b563b 100644 --- a/.gitignore +++ b/.gitignore @@ -4,6 +4,5 @@ build/ dist/ tests/data/ __pycache__/ -data/ *.egg-info/ .idea/ From 223d4aea18aaed0af819057fd09940268513efa4 Mon Sep 17 00:00:00 2001 From: Natalie Thurlby Date: Sun, 28 Mar 2021 18:49:19 +0100 Subject: [PATCH 13/21] added test data --- tests/data/uberon.obo | 232639 +++++++++++++++++++++++++++++++++++++++ 1 file changed, 232639 insertions(+) create mode 100644 tests/data/uberon.obo diff --git a/tests/data/uberon.obo b/tests/data/uberon.obo new file mode 100644 index 0000000..20f90ef --- /dev/null +++ b/tests/data/uberon.obo @@ -0,0 +1,232639 @@ +format-version: 1.2 +data-version: releases/2021-02-12 +subsetdef: added_for_HCA "Classes tagged with this subset property were added upon request from the Human Cell Atlas (HCA)." +subsetdef: cumbo "CUMBO" +subsetdef: cyclostome_subset "cyclostome structures" +subsetdef: defined_by_cytoarchitecture "brain region defined by cyto-architecture" +subsetdef: defined_by_ordinal_series "classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology" +subsetdef: developmental_classification "developmental_classification" +subsetdef: dubious_grouping "Indicates that subclasses in AOs may be inappropriately linked" +subsetdef: early_development "A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes." +subsetdef: efo_slim "EFO slim" +subsetdef: emapa_ehdaa2 "derived from the union of EHDAA2 and EMAPA - still to be checked" +subsetdef: feed_aligned "subset of classes that have logical defs text defs and synonyms aligned with FEED" +subsetdef: functional_classification "functional_classification" +subsetdef: grouping_class "Subset consisting of classes creating for grouping purposes" +subsetdef: homology_grouping "A grouping class that depends on an assumption of homology between subclasses" +subsetdef: inconsistent_with_fma "classes that have some inconsistency with FMA" +subsetdef: major_organ "somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads" +subsetdef: metazoa_core "core classes typically found across metazoa. one purpose is to create a rough set of terms that could be used to start a new metazoan AO. Note this subset is not yet fully fleshed out" +subsetdef: non_informative "abstract class brought in to group ontology classes but not informative" +subsetdef: organ_slim "organs, excluding individual muscles and skeletal elements" +subsetdef: pheno_slim "Phenotype slim" +subsetdef: phenotype_rcn "A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA" +subsetdef: uberon_slim "Uberon slim - subset that excludes obscure terms and deep compositional terms" +subsetdef: unverified_taxonomic_grouping "Indicates that the class encompasses classes from other AOs that have not been verified" +subsetdef: upper_level "abstract upper-level terms not directly useful for analysis" +subsetdef: vertebrate_core "core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO" +synonymtypedef: ABBREVIATION "abbreviation" +synonymtypedef: BRAIN_NAME_ABV "brain name abbreviations (drosophila)" +synonymtypedef: COMPARATIVE_PREFERRED "preferred term in the context of comparative anatomy" +synonymtypedef: DEPRECATED "A historic synonym, no longer encouraged" +synonymtypedef: DEVELOPMENTAL "developmental term" +synonymtypedef: DUBIOUS "dubious or contested synonym" +synonymtypedef: HOMOLOGY "a synonym made on the basis of a possibly homologous structure in another species" +synonymtypedef: HUMAN_PREFERRED "preferred term when talking about an instance of this class in Homo sapiens" +synonymtypedef: INCONSISTENT "indicates that a synonym is used in an inconsistent or confusing way, typically between species" +synonymtypedef: LATIN "latin term" +synonymtypedef: MISSPELLING "a mis-spelling that is in common use and thus recorded" +synonymtypedef: NON_AMNIOTE "synonym that is inappropriate for amniotes" +synonymtypedef: NON_MAMMAL "synonym that is inappropriate for mammals" +synonymtypedef: PENDING_REVIEW "expert consultation and attribution required" +synonymtypedef: PLURAL "plural term" +synonymtypedef: SENSU "taxonomic disambiguation" +synonymtypedef: SYSTEMATIC "a systematic synonym used as the base name for design patterns" +default-namespace: uberon +treat-xrefs-as-equivalent: AEO +treat-xrefs-as-equivalent: BILA +treat-xrefs-as-equivalent: BSPO +treat-xrefs-as-equivalent: CARO +treat-xrefs-as-equivalent: EFO +treat-xrefs-as-equivalent: GO +treat-xrefs-as-equivalent: OG +treat-xrefs-as-equivalent: VSAO +treat-xrefs-as-is_a: VHOG +remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 437 Logical Axioms: 0] +remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 20 Logical Axioms: 9] +remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 38 Logical Axioms: 38] +remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 26525 Logical Axioms: 4920] +remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 2 Logical Axioms: 2] +ontology: uberon +treat-xrefs-as-has-subclass: EHDAA +treat-xrefs-as-has-subclass: EV +treat-xrefs-as-has-subclass: NCIT +treat-xrefs-as-has-subclass: OGES +treat-xrefs-as-has-subclass: SCTID +treat-xrefs-as-reverse-genus-differentia: AAO part_of NCBITaxon:8292 +treat-xrefs-as-reverse-genus-differentia: DHBA part_of NCBITaxon:9606 +treat-xrefs-as-reverse-genus-differentia: DMBA part_of NCBITaxon:10090 +treat-xrefs-as-reverse-genus-differentia: EHDAA2 part_of NCBITaxon:9606 +treat-xrefs-as-reverse-genus-differentia: EMAPA part_of NCBITaxon:10090 +treat-xrefs-as-reverse-genus-differentia: FBbt part_of NCBITaxon:7227 +treat-xrefs-as-reverse-genus-differentia: FBdv part_of NCBITaxon:7227 +treat-xrefs-as-reverse-genus-differentia: FMA part_of NCBITaxon:9606 +treat-xrefs-as-reverse-genus-differentia: HAO part_of NCBITaxon:7399 +treat-xrefs-as-reverse-genus-differentia: HBA part_of NCBITaxon:9606 +treat-xrefs-as-reverse-genus-differentia: HsapDv part_of NCBITaxon:9606 +treat-xrefs-as-reverse-genus-differentia: MA part_of NCBITaxon:10090 +treat-xrefs-as-reverse-genus-differentia: MBA part_of NCBITaxon:10090 +treat-xrefs-as-reverse-genus-differentia: MFO part_of NCBITaxon:8089 +treat-xrefs-as-reverse-genus-differentia: MmusDv part_of NCBITaxon:10090 +treat-xrefs-as-reverse-genus-differentia: OlatDv part_of NCBITaxon:8089 +treat-xrefs-as-reverse-genus-differentia: PBA part_of NCBITaxon:9443 +treat-xrefs-as-reverse-genus-differentia: SPD part_of NCBITaxon:6893 +treat-xrefs-as-reverse-genus-differentia: TADS part_of NCBITaxon:6939 +treat-xrefs-as-reverse-genus-differentia: TAO part_of NCBITaxon:32443 +treat-xrefs-as-reverse-genus-differentia: TGMA part_of NCBITaxon:44484 +treat-xrefs-as-reverse-genus-differentia: WBbt part_of NCBITaxon:6237 +treat-xrefs-as-reverse-genus-differentia: WBls part_of NCBITaxon:6237 +treat-xrefs-as-reverse-genus-differentia: XAO part_of NCBITaxon:8353 +treat-xrefs-as-reverse-genus-differentia: ZFA part_of NCBITaxon:7954 +treat-xrefs-as-reverse-genus-differentia: ZFS part_of NCBITaxon:7954 + +[Term] +id: UBERON:0000000 +name: processual entity +def: "An occurrent [span:Occurrent] that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity." [span:ProcessualEntity] +subset: upper_level +disjoint_from: UBERON:0001062 ! anatomical entity + +[Term] +id: UBERON:0000002 +name: uterine cervix +def: "Lower, narrow portion of the uterus where it joins with the top end of the vagina." [http://en.wikipedia.org/wiki/Cervix, http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "canalis cervicis uteri" EXACT LATIN [FMA:17740, FMA:TA] +synonym: "caudal segment of uterus" EXACT [] +synonym: "cervical canal" RELATED [FMA:17740] +synonym: "cervical canal of uterus" EXACT [FMA:17740] +synonym: "cervix" BROAD [EFO:0000979] +synonym: "cervix of uterus" RELATED [BTO:0001421] +synonym: "cervix uteri" EXACT LATIN [EMAPA:29927] +synonym: "neck of uterus" EXACT [FMA:17740] +synonym: "uterine cervix" EXACT [FMA:17740] +xref: BTO:0001421 +xref: BTO:0002249 +xref: CALOHA:TS-0134 +xref: EFO:0000979 +xref: EMAPA:29927 +xref: EV:0100114 +xref: FMA:17740 +xref: GAID:376 +xref: galen:CervixUteri +xref: http://en.wikipedia.org/wiki/Cervix +xref: http://linkedlifedata.com/resource/umls/id/C0007874 +xref: http://www.snomedbrowser.com/Codes/Details/181453009 +xref: MA:0000392 +xref: MAT:0000292 +xref: MESH:D002584 +xref: NCIT:C12311 +xref: OpenCyc:Mx4rvVipEJwpEbGdrcN5Y29ycA +xref: UMLS:C0007874 {source="ncithesaurus:Cervix"} +xref: VHOG:0001359 +is_a: UBERON:0001560 ! neck of organ +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0001560 ! neck of organ +intersection_of: continuous_with UBERON:0000996 ! vagina +intersection_of: part_of UBERON:0000995 ! uterus +relationship: continuous_with UBERON:0000996 ! vagina +relationship: contributes_to_morphology_of UBERON:0000995 ! uterus +relationship: part_of UBERON:0000995 ! uterus + +[Term] +id: UBERON:0000003 +name: naris +def: "Orifice of the olfactory system. The naris is the route by which odorants enter the olfactory system[MAH]." [http://orcid.org/0000-0001-9114-8737] +subset: uberon_slim +subset: vertebrate_core +xref: AAO:0000311 +xref: EHDAA2:0001225 +xref: EHDAA:9083 +xref: EMAPA:17847 +xref: galen:Naris +xref: http://www.snomedbrowser.com/Codes/Details/272650008 +xref: MA:0000282 +xref: VHOG:0000663 +is_a: UBERON:0000161 ! orifice +intersection_of: UBERON:0000161 ! orifice +intersection_of: connects UBERON:0001707 ! nasal cavity +intersection_of: part_of UBERON:0005725 ! olfactory system +relationship: connects UBERON:0001707 ! nasal cavity +relationship: part_of UBERON:0000033 {source="ZFA"} ! head +relationship: part_of UBERON:0005725 ! olfactory system + +[Term] +id: UBERON:0000004 +name: nose +def: "The olfactory organ of vertebrates, consisting of nares, olfactory epithelia and the structures and skeletal framework of the nasal cavity." [UBERON:cjm] +subset: efo_slim +subset: major_organ +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "nasal sac" EXACT SENSU [ZFA:0000047] +synonym: "nasus" RELATED LATIN [http://en.wikipedia.org/wiki/Nose] +synonym: "nose" EXACT HUMAN_PREFERRED [MA:0000281] +synonym: "olfactory apparatus" RELATED [UBERON:cjm] +synonym: "peripheral olfactory organ" EXACT [ZFA:0000047] +synonym: "proboscis" RELATED [] +xref: BTO:0000840 +xref: CALOHA:TS-2037 +xref: EHDAA2:0001274 +xref: EHDAA:1502 +xref: EMAPA:16542 +xref: EV:0100037 +xref: EV:0100370 +xref: FMA:46472 +xref: GAID:77 +xref: galen:Nose +xref: http://en.wikipedia.org/wiki/Nose +xref: http://linkedlifedata.com/resource/umls/id/C0028429 +xref: http://www.snomedbrowser.com/Codes/Details/181195007 +xref: MA:0000281 +xref: MAT:0000139 +xref: MESH:D009666 +xref: MIAA:0000139 +xref: NCIT:C12756 +xref: OpenCyc:Mx4rvViCbJwpEbGdrcN5Y29ycA +xref: TAO:0000047 +xref: UMLS:C0028429 {source="ncithesaurus:Nose"} +xref: ZFA:0000047 +is_a: UBERON:0000475 ! organism subdivision +is_a: UBERON:0002268 ! olfactory organ +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0001004 ! respiratory system +relationship: contributes_to_morphology_of UBERON:0001456 ! face +relationship: develops_from UBERON:0003050 {source="ZFA"} ! olfactory placode +relationship: has_skeleton UBERON:0006813 ! nasal skeleton +relationship: part_of UBERON:0001456 {source="FMA", source="ZFA-def"} ! face + +[Term] +id: UBERON:0000005 +name: chemosensory organ +subset: functional_classification +subset: uberon_slim +synonym: "chemosensory sensory organ" EXACT [FBbt:00005157] +xref: FBbt:00005157 +is_a: UBERON:0000020 ! sense organ +relationship: part_of UBERON:0001016 ! nervous system +relationship: part_of UBERON:0005726 ! chemosensory system + +[Term] +id: UBERON:0000006 +name: islet of Langerhans +def: "the clusters of hormone-producing cells that are scattered throughout the pancreas" [MA:0000127, MESH:A03.734.414, MP:0005215] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "island of Langerhans" RELATED [BTO:0000991] +synonym: "island of pancreas" RELATED [BTO:0000991] +synonym: "islets of Langerhans" RELATED [] +synonym: "pancreatic insula" EXACT [] +synonym: "pancreatic islet" EXACT [] +xref: AAO:0010406 +xref: BTO:0000991 +xref: CALOHA:TS-0741 +xref: EFO:0000856 +xref: EMAPA:32927 +xref: EV:0100130 +xref: FMA:16016 +xref: GAID:324 +xref: http://en.wikipedia.org/wiki/Islets_of_Langerhans +xref: http://linkedlifedata.com/resource/umls/id/C0022131 +xref: MA:0000127 +xref: MAT:0000076 +xref: MESH:D007515 +xref: MIAA:0000076 +xref: NCIT:C12608 +xref: UMLS:C0022131 {source="ncithesaurus:Islet_of_Langerhans"} +xref: VHOG:0000646 +xref: XAO:0000159 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0034922 ! cell cluster +relationship: contributes_to_morphology_of UBERON:0000016 ! endocrine pancreas +relationship: fma_set_term FMA:76489 +relationship: part_of UBERON:0000016 ! endocrine pancreas + +[Term] +id: UBERON:0000007 +name: pituitary gland +def: "The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [GO]. An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin [ZFIN]." [http://en.wikipedia.org/wiki/Pituitary_gland, ZFIN:curator] +comment: Terminology note: hypophysis and pituitary gland are often used informally as synonyms, but the hypophysis also includes the small infundibular or pituitary stalk[Neumann 2020] +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "glandula pituitaria" EXACT LATIN [http://en.wikipedia.org/wiki/Pituitary_gland] +synonym: "Hp" BROAD ABBREVIATION [BIRNLEX:1353, NIFSTD:NeuroNames_abbrevSource] +synonym: "hypophysis" RELATED [ZFA:0000118] +synonym: "hypophysis cerebri" RELATED [MA:0000176] +synonym: "pituitary" EXACT [BTO:0001073] +synonym: "pituitary body" EXACT [BTO:0001073] +xref: AAO:0010536 +xref: BAMS:PIT +xref: BAMS:Pit +xref: BIRNLEX:1353 +xref: BM:Die-Hy-HY +xref: BTO:0001073 +xref: CALOHA:TS-0798 +xref: DHBA:10505 +xref: EFO:0000857 +xref: EHDAA2:0001471 +xref: EHDAA:2183 +xref: EHDAA:4477 +xref: EMAPA:35998 +xref: EV:0100132 +xref: FMA:13889 +xref: GAID:457 +xref: HBA:4634 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=399 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=399 {source="BIRNLEX:1353"} +xref: http://linkedlifedata.com/resource/umls/id/C0032005 +xref: http://www.snomedbrowser.com/Codes/Details/181125003 +xref: MA:0000176 +xref: MAT:0000077 +xref: MESH:D010902 +xref: MIAA:0000077 +xref: NCIT:C12399 +xref: OpenCyc:Mx4rv6NQYJwpEbGdrcN5Y29ycA +xref: Pituitary:gland +xref: TAO:0000118 +xref: UMLS:C0032005 {source="BIRNLEX:1353"} +xref: UMLS:C0032005 {source="ncithesaurus:Pituitary_Gland"} +xref: VHOG:0000143 +xref: XAO:0000017 +xref: ZFA:0000118 +is_a: UBERON:0003296 ! gland of diencephalon +is_a: UBERON:0010133 ! neuroendocrine gland +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0001894 ! diencephalon +relationship: develops_from UBERON:0034875 ! future pituitary gland +relationship: has_part UBERON:0002196 ! adenohypophysis +relationship: has_part UBERON:0002198 ! neurohypophysis +relationship: immediate_transformation_of UBERON:0034875 {source="BGEE:ANN"} ! future pituitary gland + +[Term] +id: UBERON:0000009 +name: submucosa +def: "A layer of dense irregular connective tissue that lines organs and supports the mucosa, as well as joins the mucosa to the bulk of underlying smooth muscle. [WP,unvetted]." [http://en.wikipedia.org/wiki/Submucosa] +subset: pheno_slim +subset: uberon_slim +synonym: "organ submucosa" EXACT [FMA:85391] +synonym: "region of submucosa" EXACT [FMA:85392] +synonym: "submucosa of organ" EXACT [FMA:85391] +synonym: "submucosa of region of organ" EXACT [FMA:85392] +synonym: "submucous layer" RELATED [BTO:0002107] +synonym: "tela submucosa" RELATED [BTO:0002107] +synonym: "tunica submucosa" RELATED [] +xref: BTO:0002107 +xref: FMA:85391 +xref: FMA:85392 +xref: http://en.wikipedia.org/wiki/Submucosa +xref: http://linkedlifedata.com/resource/umls/id/C0225344 +xref: http://www.snomedbrowser.com/Codes/Details/68439008 +xref: NCIT:C13167 +xref: UMLS:C0225344 {source="ncithesaurus:Submucosa"} +is_a: UBERON:0004923 ! organ component layer +relationship: composed_primarily_of UBERON:0002384 ! connective tissue +relationship: immediately_deep_to UBERON:0000344 ! mucosa + +[Term] +id: UBERON:0000010 +name: peripheral nervous system +def: "A major division of the nervous system that contains nerves which connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands." [GO:0007422] +subset: cumbo +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "pars peripherica" EXACT LATIN [FMA:9903, FMA:TA, http://en.wikipedia.org/wiki/Peripheral_nervous_system] +synonym: "PNS" BROAD ABBREVIATION [] +synonym: "systema nervosum periphericum" EXACT LATIN [FMA:9903, FMA:TA, http://en.wikipedia.org/wiki/Peripheral_nervous_system] +xref: AAO:0000429 +xref: BAMS:PNS +xref: BILA:0000081 +xref: BIRNLEX:1111 +xref: BTO:0001028 +xref: CALOHA:TS-0808 +xref: EFO:0000891 +xref: EHDAA2:0001445 +xref: EHDAA:2893 +xref: EMAPA:16665 +xref: EV:0100335 +xref: FBbt:00005098 +xref: FMA:9903 +xref: GAID:715 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3232 +xref: http://en.wikipedia.org/wiki/Peripheral_nervous_system +xref: http://linkedlifedata.com/resource/umls/id/C0206417 +xref: http://linkedlifedata.com/resource/umls/id/C1305921 +xref: http://www.snomedbrowser.com/Codes/Details/362292005 +xref: MA:0000218 +xref: MAT:0000338 +xref: MESH:D017933 +xref: MIAA:0000338 +xref: NCIT:C12465 +xref: TAO:0000142 +xref: UMLS:C0206417 {source="ncithesaurus:Peripheral_Nervous_System"} +xref: UMLS:C0206417 {source="BIRNLEX:1111"} +xref: UMLS:C1305921 {source="BIRNLEX:1111"} +xref: VHOG:0000399 +xref: XAO:0000178 +xref: ZFA:0000142 +is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision +relationship: part_of UBERON:0001016 ! nervous system + +[Term] +id: UBERON:0000011 +name: parasympathetic nervous system +def: "The parasympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system. Parasympathetic nerves emerge cranially as pre ganglionic fibers from oculomotor, facial, glossopharyngeal and vagus and from the sacral region of the spinal cord. Most neurons are cholinergic and responses are mediated by muscarinic receptors. The parasympathetic system innervates, for example: salivary glands, thoracic and abdominal viscera, bladder and genitalia[GO]." [GO:0048486] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "parasympathetic part of autonomic division of nervous system" EXACT [] +synonym: "pars parasympathica divisionis autonomici systematis nervosi" EXACT LATIN [FMA:9907, FMA:TA] +synonym: "pars parasympathica divisionis autonomici systematis nervosi" RELATED LATIN [http://en.wikipedia.org/wiki/Parasympathetic_nervous_system] +synonym: "PNS - parasympathetic" EXACT [] +xref: AAO:0010488 +xref: BIRNLEX:2517 +xref: BTO:0001833 +xref: CALOHA:TS-2094 +xref: EFO:0000894 +xref: EHDA:10096 +xref: EHDAA2:0001402 +xref: EHDAA:4655 +xref: EMAPA:17270 +xref: FMA:9907 +xref: GAID:708 +xref: http://en.wikipedia.org/wiki/Parasympathetic_nervous_system +xref: http://linkedlifedata.com/resource/umls/id/C0030510 +xref: http://linkedlifedata.com/resource/umls/id/C1305770 +xref: http://www.snomedbrowser.com/Codes/Details/362496006 +xref: MA:0000223 +xref: MAT:0000101 +xref: MESH:D010275 +xref: MIAA:0000101 +xref: NCIT:C12764 +xref: TAO:0001575 +xref: UMLS:C0030510 {source="ncithesaurus:Parasympathetic_Nervous_System"} +xref: UMLS:C0030510 {source="BIRNLEX:2517"} +xref: UMLS:C1305770 {source="BIRNLEX:2517"} +xref: VHOG:0000755 +xref: ZFA:0001575 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision +relationship: contributes_to_morphology_of UBERON:0002410 ! autonomic nervous system +relationship: part_of UBERON:0002410 {source="FMA", source="MA", source="WP", source="ZFA-modified-from-isa"} ! autonomic nervous system + +[Term] +id: UBERON:0000012 +name: somatic nervous system +def: "Part of peripheral nervous system that includes the somatic parts of the cranial and spinal nerves and their ganglia and the peripheral sensory receptors." [NLXANAT:100301] +subset: pheno_slim +subset: uberon_slim +synonym: "PNS - somatic" EXACT [] +synonym: "somatic nervous system, somatic division" EXACT [NLXANAT:100301] +synonym: "somatic part of peripheral nervous system" EXACT [UBERON:cjm] +synonym: "somatic peripheral nervous system" EXACT [NLXANAT:100301] +xref: EFO:0000892 +xref: FMA:9904 +xref: http://en.wikipedia.org/wiki/Somatic_nervous_system +xref: MA:0002850 +xref: MAT:0000099 +xref: MIAA:0000099 +xref: NLXANAT:100301 +is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision +relationship: contributes_to_morphology_of UBERON:0001016 ! nervous system +relationship: part_of UBERON:0000010 ! peripheral nervous system + +[Term] +id: UBERON:0000013 +name: sympathetic nervous system +def: "The sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter [GO]." [GO:0048485] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "pars sympathica divisionis autonomici systematis nervosi" EXACT LATIN [FMA:9906, FMA:TA] +synonym: "pars sympathica divisionis autonomici systematis nervosi" RELATED LATIN [http://en.wikipedia.org/wiki/Sympathetic_nervous_system] +synonym: "sympathetic nervous system" EXACT [] +synonym: "sympathetic part of autonomic division of nervous system" EXACT [] +xref: AAO:0010487 +xref: BIRNLEX:2516 +xref: BTO:0001832 +xref: CALOHA:TS-2050 +xref: EFO:0000893 +xref: EHDAA2:0001971 +xref: EHDAA:3769 +xref: EMAPA:16985 +xref: FMA:9906 +xref: GAID:710 +xref: http://en.wikipedia.org/wiki/Sympathetic_nervous_system +xref: http://linkedlifedata.com/resource/umls/id/C0039044 +xref: http://linkedlifedata.com/resource/umls/id/C1269646 +xref: http://www.snomedbrowser.com/Codes/Details/362484004 +xref: MA:0000225 +xref: MESH:D013564 +xref: MIAA:0000100 +xref: NCIT:C12795 +xref: TAO:0001576 +xref: UMLS:C0039044 {source="ncithesaurus:Sympathetic_Nervous_System"} +xref: UMLS:C0039044 {source="BIRNLEX:2516"} +xref: UMLS:C1269646 {source="BIRNLEX:2516"} +xref: VHOG:0000384 +xref: ZFA:0001576 +is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision +relationship: contributes_to_morphology_of UBERON:0002410 ! autonomic nervous system +relationship: part_of UBERON:0002410 {source="FMA", source="MA", source="ZFA-modified-from-isa"} ! autonomic nervous system + +[Term] +id: UBERON:0000014 +name: zone of skin +def: "Any portion of the organ that covers that body and consists of a layer of epidermis and a layer of dermis." [http://en.wikipedia.org/wiki/Skin, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "portion of skin" EXACT [] +synonym: "region of skin" EXACT [] +synonym: "skin" EXACT [MA:0000151] +synonym: "skin region" EXACT [] +synonym: "skin zone" EXACT [] +xref: EHDAA2:0001844 +xref: EHDAA:6530 +xref: EMAPA:17525 +xref: EV:0100152 +xref: FMA:86166 +xref: GAID:933 +xref: http://en.wikipedia.org/wiki/Skin +xref: http://www.snomedbrowser.com/Codes/Details/20795001 +xref: MA:0000151 +xref: MAT:0000284 +xref: MESH:D012867 +xref: MIAA:0000284 +xref: OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA +xref: VHOG:0000860 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0034944 {source="FMA"} ! zone of organ +relationship: has_part UBERON:0001003 ! skin epidermis +relationship: has_part UBERON:0002067 ! dermis +relationship: part_of UBERON:0002097 ! skin of body + +[Term] +id: UBERON:0000015 +name: non-material anatomical boundary +def: "A non-material anatomical entity of two dimensions. Anatomical boundaries are contiguous structures." [CARO:0000010] +comment: Except in the case of abstracted fiat boundaries such as the midline plane of an organism, all 2D anatomical entities have a 3 dimensional projection. For example, the surface of the shell of a muscle has a distinct shape that projects into the third dimension. Note that boundaries are 2D structures. They have no thickness - and so can not be sites of gene expression or gene product localisation. For this, use boundary region terms. +subset: upper_level +synonym: "anatomical boundary" EXACT [CARO:0000010] +xref: AEO:0000192 +xref: CARO:0000010 +xref: FMA:50705 +is_a: UBERON:0000466 {source="CARO"} ! immaterial anatomical entity + +[Term] +id: UBERON:0000016 +name: endocrine pancreas +def: "The part of the pancreas that is part of the endocrine system and is made up of islet cells, which produce insulin, glucagon and somatostatin." [GO:GO, http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "endocrine pancreas" EXACT [] +synonym: "endocrine part of pancreas" RELATED [BTO:0000650] +synonym: "islets of Langerhans part of pancreas" RELATED [] +synonym: "pars endocrina pancreatis" EXACT [] +xref: BTO:0000650 +xref: CALOHA:TS-1302 +xref: EFO:0002542 +xref: EMAPA:35305 +xref: EV:0100129 +xref: FMA:16018 +xref: http://en.wikipedia.org/wiki/Islets_of_Langerhans +xref: http://www.snomedbrowser.com/Codes/Details/361339003 +xref: MA:0001582 +xref: NCIT:C32509 +xref: TAO:0001260 +xref: VHOG:0000049 +xref: ZFA:0001260 +is_a: UBERON:0000471 {source="ZFA"} ! compound organ component +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: composed_primarily_of UBERON:0000006 ! islet of Langerhans +relationship: contributes_to_morphology_of UBERON:0001264 ! pancreas +relationship: develops_from UBERON:0003923 ! dorsal pancreatic bud +relationship: part_of UBERON:0000949 {source="AAO", source="FMA", source="XAO"} ! endocrine system +relationship: part_of UBERON:0001264 ! pancreas + +[Term] +id: UBERON:0000017 +name: exocrine pancreas +def: "The part of the pancreas that is part of the exocrine system and which produces and store zymogens of digestive enzymes, such as chymotrypsinogen and trypsinogen in the acinar cells [GO]." [GOC:GO, http://orcid.org/0000-0002-6601-2165] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "exocrine component of pancreas" RELATED [] +synonym: "exocrine pancreas" EXACT [] +synonym: "exocrine part of pancreas" RELATED [BTO:0000434] +synonym: "pars exocrina pancreatis" EXACT [] +xref: AAO:0010407 +xref: BTO:0000434 +xref: CALOHA:TS-1241 +xref: EMAPA:35328 +xref: EV:0100093 +xref: FMA:16017 +xref: http://en.wikipedia.org/wiki/Exocrine_component_of_pancreas +xref: http://linkedlifedata.com/resource/umls/id/C0553695 +xref: http://www.snomedbrowser.com/Codes/Details/248202004 +xref: MA:0002415 +xref: NCIT:C32546 +xref: TAO:0001249 +xref: UMLS:C0553695 {source="ncithesaurus:Exocrine_Pancreas"} +xref: VHOG:0000048 +xref: XAO:0000137 +xref: ZFA:0001249 +is_a: UBERON:0000409 ! serous gland +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0005177 ! trunk region element +relationship: contributes_to_morphology_of UBERON:0001264 ! pancreas +relationship: develops_from UBERON:0003924 ! ventral pancreatic bud +relationship: has_part UBERON:0001263 ! pancreatic acinus +relationship: has_part UBERON:0007329 ! pancreatic duct +relationship: part_of UBERON:0001264 ! pancreas + +[Term] +id: UBERON:0000018 +name: compound eye +def: "A light sensing organ composed of ommatidia" [FB:gg, http://en.wikipedia.org/wiki/Compound_eye] +subset: organ_slim +subset: uberon_slim +synonym: "adult compound eye" RELATED [] +synonym: "faceted eye" RELATED [] +synonym: "Facettenauge" RELATED [BTO:0001921] +synonym: "insect eye" RELATED [] +synonym: "Komplexauge" RELATED [BTO:0001921] +synonym: "zusammengesetztes Auge" RELATED [BTO:0001921] +xref: BTO:0001921 +xref: Compound:eye +xref: FBbt:00004508 +xref: HAO:0000217 +xref: TGMA:0000024 +is_a: UBERON:0015165 ! multi-unit eye +intersection_of: UBERON:0000970 ! eye +intersection_of: composed_primarily_of UBERON:0000971 ! ommatidium +relationship: composed_primarily_of UBERON:0000971 ! ommatidium + +[Term] +id: UBERON:0000019 +name: camera-type eye +def: "An organ of sight that includes the camera-type eyeball and supporting structures such as the lacrimal apparatus, the conjunctiva, the eyelid." [GO:0043010, https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "camera-type eye plus associated structures" RELATED [] +synonym: "eye" BROAD [FMA:54448] +synonym: "eyes" RELATED PLURAL [TAO:0000107] +synonym: "orbital part of face" RELATED [FMA:54448] +synonym: "orbital region" RELATED [FMA:54448] +synonym: "regio orbitalis" EXACT LATIN [FMA:54448, FMA:TA] +synonym: "vertebrate eye" NARROW [] +xref: AAO:0010340 +xref: BIRNLEX:1169 +xref: BTO:0004688 +xref: EHDAA2:0000484 +xref: EHDAA:936 +xref: EMAPA:16198 +xref: FMA:54448 +xref: http://linkedlifedata.com/resource/umls/id/C0015392 +xref: http://linkedlifedata.com/resource/umls/id/C1280202 +xref: http://www.snomedbrowser.com/Codes/Details/181143004 +xref: MA:0000261 +xref: NCIT:C12401 +xref: OpenCyc:Mx8Ngx4rwKSh9pwpEbGdrcN5Y29ycB4rvVil5pwpEbGdrcN5Y29ycB4rvViTvpwpEbGdrcN5Y29ycA +xref: TAO:0000107 +xref: UMLS:C0015392 {source="BIRNLEX:1169"} +xref: UMLS:C0015392 {source="ncithesaurus:Eye"} +xref: UMLS:C1280202 {source="BIRNLEX:1169"} +xref: VHOG:0000275 +xref: XAO:0000179 +xref: ZFA:0000107 +is_a: UBERON:0000047 ! simple eye +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015212 ! lateral structure +relationship: develops_from UBERON:0003072 {evidence="definitional"} ! optic cup +relationship: existence_ends_during UBERON:0000066 ! fully formed stage +relationship: has_part UBERON:0000965 ! lens of camera-type eye +relationship: has_part UBERON:0000966 ! retina +relationship: in_lateral_side_of UBERON:0000033 ! head +relationship: part_of UBERON:0004088 ! orbital region + +[Term] +id: UBERON:0000020 +name: sense organ +def: "An organ that is capable of transducing sensory stimulus to the nervous system." [https://github.com/obophenotype/uberon/issues/549, https://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "organ of sense organ system" EXACT [OBOL:accepted] +synonym: "organ of sensory organ system" EXACT [OBOL:accepted] +synonym: "organ of sensory system" EXACT [OBOL:accepted] +synonym: "sense organ system organ" EXACT [OBOL:automatic] +synonym: "sensillum" NARROW [WBbt:0006929] +synonym: "sensor" RELATED [] +synonym: "sensory organ" EXACT [] +synonym: "sensory organ system organ" EXACT [OBOL:automatic] +synonym: "sensory system organ" EXACT [OBOL:accepted] +synonym: "Sinnesorgan" RELATED [BTO:0000202] +xref: AEO:0000094 +xref: BSA:0000121 +xref: BTO:0000202 +xref: CALOHA:TS-2043 +xref: EHDAA2:0001824 +xref: EHDAA:500 +xref: EMAPA:35955 +xref: FBbt:00005155 +xref: GAID:63 +xref: HAO:0000930 +xref: http://linkedlifedata.com/resource/umls/id/C0935626 +xref: http://www.snomedbrowser.com/Codes/Details/244485009 +xref: MA:0000017 +xref: MESH:D012679 +xref: NCIT:C33224 +xref: UMLS:C0935626 {source="ncithesaurus:Organ_of_the_Special_Sense"} +xref: VHOG:0001407 +xref: WBbt:0006929 +is_a: UBERON:0000062 ! organ +property_value: dc-contributor https://github.com/cmungall +relationship: part_of UBERON:0001032 ! sensory system + +[Term] +id: UBERON:0000021 +name: cutaneous appendage +def: "Anatomical projection that protrudes from the skin. Examples: hair, nail, feather, claw, hoof, horn, wattle, spur, beak, antler, bristle and some scales." [https://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "epidermal appendage" NARROW [] +synonym: "epidermal growth" RELATED [] +synonym: "skin appendage" EXACT [FMA:71012] +xref: CALOHA:TS-0051 +xref: FMA:71012 +xref: http://www.snomedbrowser.com/Codes/Details/276160000 +is_a: UBERON:0013703 ! integumentary projection +relationship: attaches_to UBERON:0002097 ! skin of body + +[Term] +id: UBERON:0000022 +name: feather +def: "one of the epidermal growths that form the distinctive outer covering, or plumage, on birds. Feathers are formed in tiny follicles in the epidermis, or outer skin layer, that produce keratin proteins." [http://en.wikipedia.org/wiki/Feather] +subset: efo_slim +subset: uberon_slim +xref: BTO:0000447 +xref: EFO:0000955 +xref: GAID:1214 +xref: http://en.wikipedia.org/wiki/Feather +xref: http://www.snomedbrowser.com/Codes/Details/410027006 +xref: MAT:0000156 +xref: MESH:D005241 +xref: OpenCyc:Mx4rvVjW-5wpEbGdrcN5Y29ycA +is_a: UBERON:0000021 ! cutaneous appendage +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: develops_from UBERON:0001003 ! skin epidermis + +[Term] +id: UBERON:0000023 +name: wing +def: "Appendage that is shaped in order to produce lift for flight through the air." [http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: grouping_class +subset: uberon_slim +synonym: "aliform appendage" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: BTO:0001463 +xref: EFO:0000885 +xref: GAID:1217 +xref: http://en.wikipedia.org/wiki/Wing +xref: MAT:0000202 +xref: MESH:D014921 +xref: MIAA:0000202 +is_a: UBERON:0000026 ! appendage + +[Term] +id: UBERON:0000024 +name: forelimb wing +def: "Forelimb that is used to produce lift for flight through the air." [http://orcid.org/0000-0002-6601-2165] +comment: Examples: bat wing, bird wing +is_a: UBERON:0000023 ! wing +is_a: UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0000025 +name: tube +def: "Any hollow cylindrical anatomical structure containing a lumen through which substances are transported." [http://orcid.org/0000-0002-6601-2165] +synonym: "anatomical tube" EXACT [] +synonym: "duct" NARROW [] +xref: galen:Tube +is_a: UBERON:0004111 ! anatomical conduit +relationship: has_part UBERON:0013522 ! subdivision of tube + +[Term] +id: UBERON:0000026 +name: appendage +def: "Major subdivision of an organism that protrudes from the body[DOS, CARO]." [CARO:DOS] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "appendages" RELATED PLURAL [XAO:0000218] +synonym: "extremitaet" RELATED [BTO:0001492] +synonym: "extremity" RELATED [] +synonym: "limbs/digits/tail" RELATED [MP:0000001] +xref: AEO:0000193 +xref: BILA:0000018 +xref: BTO:0001492 +xref: CARO:0010003 +xref: EFO:0000799 +xref: EHDAA2:0003193 +xref: EMAPA:37283 {source="MA:th"} +xref: EV:0100155 +xref: FBbt:00007000 +xref: HAO:0000144 +xref: http://en.wikipedia.org/wiki/Appendage +xref: http://linkedlifedata.com/resource/umls/id/C0598782 +xref: MAT:0000023 +xref: MESH:D005121 +xref: MIAA:0000023 +xref: NCIT:C61460 +xref: OpenCyc:Mx4rvViC-JwpEbGdrcN5Y29ycA +xref: UMLS:C0598782 {source="ncithesaurus:Appendage"} +xref: VSAO:0000075 +xref: XAO:0000218 +is_a: UBERON:0000475 ! organism subdivision + +[Term] +id: UBERON:0000029 +name: lymph node +def: "Any of the rounded masses of lymphoid tissue that are surrounded by a capsule of connective tissue, are distributed along the lymphatic vessels, and contain numerous lymphocytes which filter the flow of lymph." [BTO:0000784] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "lymph gland" RELATED [VHOG:0001273] +synonym: "nodus lymphaticus" RELATED LATIN [http://en.wikipedia.org/wiki/Lymph_node] +xref: BTO:0000784 +xref: CALOHA:TS-0579 +xref: EFO:0000872 +xref: EMAPA:35523 +xref: EV:0100050 +xref: FMA:5034 +xref: GAID:947 +xref: galen:Lymphnode +xref: http://linkedlifedata.com/resource/umls/id/C0024204 +xref: http://www.snomedbrowser.com/Codes/Details/181756000 +xref: Lymph:node +xref: MA:0000139 +xref: MAT:0000442 +xref: MESH:D008198 +xref: NCIT:C12745 +xref: NCIT:C33027 +xref: OpenCyc:Mx4rwLPqLpwpEbGdrcN5Y29ycA +xref: TAO_RETIRED:0005318 +xref: UMLS:C0024204 {source="ncithesaurus:Lymph_Node"} +xref: VHOG:0001273 +xref: ZFA_RETIRED:0005318 +is_a: UBERON:0005057 ! immune organ +intersection_of: UBERON:0000062 ! organ +intersection_of: composed_primarily_of UBERON:0001744 ! lymphoid tissue +intersection_of: continuous_with UBERON:0001473 ! lymphatic vessel +relationship: composed_primarily_of UBERON:0001744 ! lymphoid tissue +relationship: continuous_with UBERON:0001473 ! lymphatic vessel +relationship: develops_from UBERON:0034953 ! embryonic lymph sac +relationship: has_part UBERON:0002006 ! cortex of lymph node +relationship: has_part UBERON:0002007 ! medulla of lymph node +relationship: has_part UBERON:0002194 ! capsule of lymph node +relationship: has_part UBERON:0002391 ! lymph +relationship: part_of UBERON:0002465 ! lymphoid system + +[Term] +id: UBERON:0000030 +name: lamina propria +def: "A thin layer of loose connective tissue which lies beneath the epithelium and together with the epithelium constitutes the mucosa[WP]. The lamina propria contains capillaries and a central lacteal (lymph vessel) in the small intestine, as well as lymphoid tissue. Lamina propria also contains glands with the ducts opening on to the mucosal epithelium, that secrete mucus and serous secretions." [http://en.wikipedia.org/wiki/Lamina_propria] +subset: uberon_slim +synonym: "lamina propria mucosa" EXACT [] +synonym: "lamina propria mucosae" EXACT [] +synonym: "tunica propria" RELATED [BTO:0002330] +xref: BTO:0002330 +xref: FMA:62517 +xref: http://linkedlifedata.com/resource/umls/id/C1179187 +xref: http://www.snomedbrowser.com/Codes/Details/298225002 +xref: Lamina:propria +xref: NCIT:C32918 +xref: UMLS:C1179187 {source="ncithesaurus:Lamina_Propria"} +is_a: UBERON:0004923 ! organ component layer +relationship: composed_primarily_of UBERON:0011825 ! loose connective tissue +relationship: immediately_deep_to UBERON:0000483 ! epithelium +relationship: part_of UBERON:0000344 ! mucosa + +[Term] +id: UBERON:0000031 +name: lamina propria of trachea +def: "A lamina propria that is part of a respiratory airway." [OBOL:automatic] +synonym: "lamina propria mucosa of trachea" EXACT [OBOL:automatic] +synonym: "lamina propria mucosa of windpipe" EXACT [OBOL:automatic] +synonym: "lamina propria mucosae of trachea" EXACT [OBOL:automatic] +synonym: "lamina propria mucosae of windpipe" EXACT [OBOL:automatic] +synonym: "lamina propria of windpipe" EXACT [OBOL:automatic] +synonym: "trachea lamina propria" EXACT [] +synonym: "trachea lamina propria mucosa" EXACT [OBOL:automatic] +synonym: "trachea lamina propria mucosae" EXACT [OBOL:automatic] +synonym: "tracheal lamina propria" EXACT [] +synonym: "windpipe lamina propria" EXACT [OBOL:automatic] +synonym: "windpipe lamina propria mucosa" EXACT [OBOL:automatic] +synonym: "windpipe lamina propria mucosae" EXACT [OBOL:automatic] +xref: EMAPA:35877 +xref: FMA:265157 +xref: http://linkedlifedata.com/resource/umls/id/C1710457 +xref: MA:0001858 +xref: NCIT:C49305 +xref: UMLS:C1710457 {source="ncithesaurus:Trachea_Lamina_Propria"} +is_a: UBERON:0004779 ! respiratory system lamina propria +intersection_of: UBERON:0000030 ! lamina propria +intersection_of: part_of UBERON:0001005 ! respiratory airway +relationship: part_of UBERON:0000379 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! tracheal mucosa + +[Term] +id: UBERON:0000032 +name: obsolete cranial structure +comment: obsoleted as it was a grouping class that served no purpose +is_obsolete: true + +[Term] +id: UBERON:0000033 +name: head +def: "The head is the anterior-most division of the body [GO]." [GO:0060322, http://en.wikipedia.org/wiki/Head] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "adult head" NARROW [] +synonym: "cephalic area" RELATED [SPD:0000016] +synonym: "head (volume)" EXACT [FMA:7154] +xref: AAO:0010335 +xref: AEO:0000106 +xref: BILA:0000115 +xref: BIRNLEX:1230 +xref: BTO:0000282 +xref: CALOHA:TS-0436 +xref: EFO:0000964 +xref: EHDAA2:0003106 +xref: EMAPA:31858 +xref: FBbt:00000004 +xref: FMA:7154 +xref: GAID:61 +xref: galen:Head +xref: HAO:0000397 +xref: http://en.wikipedia.org/wiki/Head +xref: http://linkedlifedata.com/resource/umls/id/C0018670 +xref: http://www.snomedbrowser.com/Codes/Details/302548004 +xref: MA:0000023 +xref: MAT:0000294 +xref: MESH:D006257 +xref: MIAA:0000294 +xref: NCIT:C12419 +xref: OpenCyc:Mx4rEOLm4rgPEdmAAAACs6hRjg +xref: OpenCyc:Mx4rvVi6YJwpEbGdrcN5Y29ycA +xref: SPD:0000016 +xref: TAO:0001114 +xref: TGMA:0000002 +xref: UMLS:C0018670 {source="ncithesaurus:Head"} +xref: UMLS:C0018670 {source="BIRNLEX:1230"} +xref: VHOG:0001644 +xref: WBbt:0005739 +xref: XAO:0003024 +xref: ZFA:0001114 +is_a: UBERON:0011676 ! subdivision of organism along main body axis +relationship: part_of UBERON:0007811 ! craniocervical region + +[Term] +id: UBERON:0000035 +name: primary ovarian follicle +def: "An ovarian follicle that has one layer of granulosa cells." [GO:0001545, GOC:mtg_mpo, http://ovary.stanford.edu] +subset: pheno_slim +synonym: "folliculus ovaricus primarius" EXACT LATIN [FMA:18634] +synonym: "ovary primary follicle" EXACT [MA:0002907] +synonym: "ovary primary follicle" EXACT [EMAPA:35631] +synonym: "preantral follicle of ovary" RELATED [] +synonym: "primary egg follicle" RELATED [] +synonym: "primary follicle" RELATED [EMAPA:35631] +synonym: "primary follicle of ovary" EXACT [FMA:18634] +synonym: "primary ovarian follicle" EXACT [FMA:18634] +xref: BTO:0000410 +xref: EMAPA:35631 +xref: FMA:18634 +xref: http://www.snomedbrowser.com/Codes/Details/258665002 +xref: MA:0002907 +is_a: UBERON:0001305 ! ovarian follicle +intersection_of: UBERON:0001305 ! ovarian follicle +intersection_of: has_component UBERON:0005170 {minCardinality="1", maxCardinality="1"} ! granulosa cell layer +relationship: develops_from UBERON:0003981 ! primordial ovarian follicle +relationship: has_component UBERON:0005170 ! granulosa cell layer + +[Term] +id: UBERON:0000036 +name: secondary ovarian follicle +def: "A maturing ovarian follicle that has two more more layers of granulosa cells, up to the onset of antrum formation." [GO:0001546, http://ovary.stanford.edu, http://www.repropedia.org/secondary-ovarian-follicle] +subset: pheno_slim +synonym: "antral follicle of ovary" RELATED [FMA:18637] +synonym: "folliculus ovaricus secondarius" EXACT [] +synonym: "ovary secondary follicle" EXACT [MA:0002908] +synonym: "pre-antral follicle" EXACT [GO:0001546] +synonym: "pre-ovulatory follicle" RELATED [EMAPA:30777] +synonym: "preantral follicle" EXACT [GO:0001546] +synonym: "secondary egg follicle" RELATED [] +synonym: "secondary follicle" RELATED [EMAPA:35632] +synonym: "secondary follicle of ovary" EXACT [] +xref: EMAPA:35632 +xref: FMA:18637 +xref: MA:0002908 +is_a: UBERON:0001305 ! ovarian follicle +intersection_of: UBERON:0001305 ! ovarian follicle +intersection_of: has_component UBERON:0005170 {minCardinality="2"} ! granulosa cell layer +intersection_of: has_potential_to_develop_into UBERON:0000037 ! tertiary ovarian follicle +relationship: develops_from UBERON:0000035 ! primary ovarian follicle +relationship: has_component UBERON:0005170 ! granulosa cell layer +relationship: has_potential_to_develop_into UBERON:0000037 ! tertiary ovarian follicle + +[Term] +id: UBERON:0000037 +name: tertiary ovarian follicle +def: "A follicle that has reached the most mature stage of folliculogenesis, characterized by the presence of the antrum" [http://orcid.org/0000-0002-6601-2165, http://www.repropedia.org/antral-follicle] +subset: pheno_slim +subset: uberon_slim +synonym: "antral follicle" BROAD [] +synonym: "antral ovarian follicle" EXACT [GO:0001547] +synonym: "folliculi ovarici vesiculosi" EXACT LATIN [FMA:18641, FMA:TA] +synonym: "folliculus ovaricus tertiarius" EXACT [] +synonym: "folliculus ovaricus tertiarius (vesiculosus)" EXACT [FMA:18641] +synonym: "folliculus ovaricus tertiarius (vesiculous)" EXACT [] +synonym: "Graafian follicle" EXACT [http://www.repropedia.org/antral-follicle] +synonym: "ovary antral follicle" EXACT [http://www.repropedia.org/antral-follicle, MA:0002909] +synonym: "tertiary egg follicle" RELATED [] +synonym: "tertiary follicle of ovary" EXACT [FMA:18641, http://www.repropedia.org/antral-follicle] +synonym: "vesicular follicle of ovary" EXACT [FMA:18641] +synonym: "vesicular ovarian follicle" EXACT [FMA:18641] +xref: EMAPA:30763 +xref: FMA:18641 +xref: http://linkedlifedata.com/resource/umls/id/C0600225 +xref: http://www.snomedbrowser.com/Codes/Details/362261008 +xref: MA:0002909 +xref: NCIT:C32692 +xref: UMLS:C0600225 {source="ncithesaurus:Graafian_Follicle"} +is_a: UBERON:0001305 ! ovarian follicle +intersection_of: UBERON:0001305 ! ovarian follicle +intersection_of: has_component UBERON:0005170 {minCardinality="2"} ! granulosa cell layer +intersection_of: has_part UBERON:0000039 ! follicular antrum +relationship: develops_from UBERON:0000036 ! secondary ovarian follicle +relationship: has_component UBERON:0005170 ! granulosa cell layer +relationship: has_part UBERON:0000039 ! follicular antrum + +[Term] +id: UBERON:0000038 +name: follicular fluid +def: "The fluid surrounding the ovum and granulosa cells in the ovarian follicle." [http://en.wikipedia.org/wiki/Follicular_fluid, ISBN:145114847X, MESH:D015571] +subset: uberon_slim +synonym: "antral fluid, ovarian follicle" RELATED [] +synonym: "liquor follicularis" EXACT [FMA:18665] +synonym: "liquor folliculi" EXACT LATIN [] +synonym: "liquor folliculi" RELATED LATIN [http://en.wikipedia.org/wiki/Follicular_fluid] +synonym: "ovarian follicular fluid" RELATED [BTO:0004383] +synonym: "ovary follicle fluid" EXACT [MA:0002511] +synonym: "ovary follicular fluid" RELATED [BTO:0004383] +xref: BTO:0004383 +xref: CALOHA:TS-0728 +xref: FMA:18665 +xref: Follicular:fluid +xref: GAID:372 +xref: http://linkedlifedata.com/resource/umls/id/C1709369 +xref: MA:0002511 +xref: MESH:D015571 +xref: NCIT:C52556 +xref: UMLS:C1709369 {source="ncithesaurus:Ovarian_Follicle_Fluid"} +is_a: UBERON:0000463 ! organism substance +relationship: has_part UBERON:0000456 ! secretion of exocrine gland +relationship: has_part UBERON:0007779 ! transudate +relationship: located_in UBERON:0000039 ! follicular antrum +relationship: part_of UBERON:0001305 ! ovarian follicle + +[Term] +id: UBERON:0000039 +name: follicular antrum +def: "Region of ovarian follicle filled with follicular fluid." [http://en.wikipedia.org/wiki/Follicular_antrum] +subset: uberon_slim +synonym: "antral cavity" EXACT [FMA:18675] +synonym: "antrum folliculare" EXACT [FMA:18675] +synonym: "antrum follicularum" RELATED LATIN [http://en.wikipedia.org/wiki/Follicular_antrum] +synonym: "ovarian follicle antrum" EXACT [GO:0001548] +xref: EMAPA:37867 {source="MA:th"} +xref: FMA:18675 +xref: Follicular:antrum +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: location_of UBERON:0000038 ! follicular fluid +intersection_of: part_of UBERON:0001305 ! ovarian follicle +relationship: location_of UBERON:0000038 ! follicular fluid +relationship: part_of UBERON:0001305 ! ovarian follicle + +[Term] +id: UBERON:0000040 +name: Leydig's organ +def: "A hemopoietic organ found in elasmobranchs. Along with the spleen and special tissue around the gonads, this structure produces red blood cells and it is nestled along the top and bottom of the esophagus." [http://en.wikipedia.org/wiki/Leydig's_organ, http://www.elasmo-research.org/education/topics/p_blood_cells.htm] +comment: Phenotype notes: Leydig's organ can be quite large - a 1.6-kilogram (3.5-pound) one was reported from a 1.8-metre (6-foot) long Bluntnose Sixgill Shark (Hexanchus griseus). Structure notes: divided into dorsal and ventral patches, gradation varies between species. Lacks erythroblasts and fat cells[Honma 1983] +subset: uberon_slim +xref: Leydig's:organ +is_a: UBERON:0004177 ! hemopoietic organ +is_a: UBERON:0005057 ! immune organ +is_a: UBERON:0005178 ! thoracic cavity element +relationship: located_in UBERON:0001096 ! wall of esophagus + +[Term] +id: UBERON:0000041 +name: odontode scale +def: "Multi-tissue structure composed of enameloid, dentine surrounding a pulp cavity, and bone of attachment anchoring the element into the dermis[VSAO]." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000079] +subset: uberon_slim +synonym: "dermal denticle" EXACT [http://en.wikipedia.org/wiki/Dermal_denticle] +synonym: "odontode scale" EXACT [VSAO:0000079] +synonym: "placoid scale" EXACT [VSAO:curator] +xref: Dermal:denticle +xref: VSAO:0000079 +is_a: UBERON:0007380 {source="VSAO"} ! dermal scale +relationship: has_part UBERON:0001751 ! dentine +relationship: has_part UBERON:0011692 ! enameloid +relationship: present_in_taxon NCBITaxon:119203 +relationship: present_in_taxon NCBITaxon:7777 + +[Term] +id: UBERON:0000042 +name: serous membrane +def: "multi-tissue structure that is comprised of a secretory epithelial layer (mesothelium) and a connective tissue layer." [http://en.wikipedia.org/wiki/Serous_membrane, https://github.com/obophenotype/uberon/issues/86] +subset: uberon_slim +subset: vertebrate_core +synonym: "serosa" RELATED [http://en.wikipedia.org/wiki/Serous_membrane] +synonym: "tunica serosa" EXACT LATIN [FMA:9581] +synonym: "wall of serous sac" EXACT [FMA:9581] +xref: FMA:9581 +xref: GAID:19 +xref: http://linkedlifedata.com/resource/umls/id/C0036760 +xref: http://www.snomedbrowser.com/Codes/Details/362878009 +xref: MESH:D012704 +xref: NCIT:C13169 +xref: Serous:membrane +xref: TAO:0005425 +xref: UMLS:C0036760 {source="ncithesaurus:Serosa"} +xref: ZFA:0005425 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004120 ! mesoderm-derived structure +property_value: dc-contributor https://github.com/cmungall +relationship: has_part UBERON:0001136 ! mesothelium +relationship: has_part UBERON:0002384 ! connective tissue +relationship: part_of UBERON:0000060 ! anatomical wall + +[Term] +id: UBERON:0000043 +name: tendon +def: "Dense regular connective tissue that connects muscle to bone[VSAO]." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, http://en.wikipedia.org/wiki/Tendon, VSAO:0000073] +subset: pheno_slim +subset: uberon_slim +synonym: "sinew" RELATED [http://en.wikipedia.org/wiki/Tendon] +synonym: "tendo" RELATED LATIN [http://en.wikipedia.org/wiki/Tendon] +xref: AEO:0000091 +xref: BTO:0001356 +xref: CALOHA:TS-1021 +xref: EHDAA2:0003091 +xref: EMAPA:35854 +xref: EV:0100149 +xref: FMA:9721 +xref: GAID:276 +xref: galen:Tendon +xref: http://en.wikipedia.org/wiki/Tendon +xref: http://linkedlifedata.com/resource/umls/id/C0039508 +xref: http://www.snomedbrowser.com/Codes/Details/256667004 +xref: MA:0000115 +xref: MESH:D013710 +xref: NCIT:C13045 +xref: OpenCyc:Mx4rvVjefJwpEbGdrcN5Y29ycA +xref: UMLS:C0039508 {source="ncithesaurus:Tendon"} +xref: VHOG:0001286 +xref: VSAO:0000073 +xref: XAO:0000173 +xref: ZFA:0005647 +is_a: UBERON:0007846 {source="VSAO"} ! dense regular connective tissue +relationship: connects UBERON:0001474 ! bone element +relationship: connects UBERON:0001630 ! muscle organ +relationship: part_of UBERON:0002204 {source="OG"} ! musculoskeletal system + +[Term] +id: UBERON:0000044 +name: dorsal root ganglion +alt_id: UBERON:0026602 +def: "Sensory ganglia located on the dorsal spinal roots within the vertebral column. The spinal ganglion cells are pseudounipolar. The single primary branch bifurcates sending a peripheral process to carry sensory information from the periphery and a central branch which relays that information to the spinal cord or brain. (MSH) * ganglion found on the posterior root of each spinal nerve, composed of the unipolar nerve cell bodies of the sensory neurons of the nerve. (CSP)" [BIRNLEX:2596] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "dorsal root ganglia" RELATED PLURAL [] +synonym: "dorsal root ganglion" EXACT [BTO:0001264] +synonym: "DRG" RELATED ABBREVIATION [] +synonym: "ganglion of dorsal root" EXACT [OBOL:automatic] +synonym: "ganglion sensorium nervi spinalis" RELATED [BTO:0001264] +synonym: "ganglion sensorium nervi spinalis" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsal_root_ganglion] +synonym: "ganglion spinale" RELATED [BTO:0001264] +synonym: "ganglion spinalis" EXACT [FMA:5888] +synonym: "posterior root ganglion" RELATED [EMAPA:16668] +synonym: "spinal ganglion" EXACT [FMA:5888] +synonym: "spinal ganglion part of peripheral nervous system" EXACT [BIRNLEX:2598] +xref: AAO:0011032 +xref: BIRNLEX:2596 +xref: BIRNLEX:2598 +xref: BTO:0001264 +xref: CALOHA:TS-0954 +xref: EFO:0000900 +xref: EHDAA2:0000418 +xref: EHDAA2:0001897 +xref: EHDAA:2899 +xref: EMAPA:16667 +xref: EMAPA:16668 +xref: EMAPA:18372 +xref: EV:0100373 +xref: FMA:5888 +xref: http://en.wikipedia.org/wiki/Dorsal_root_ganglion +xref: http://linkedlifedata.com/resource/umls/id/C0017070 +xref: http://www.snomedbrowser.com/Codes/Details/244455004 +xref: MA:0000231 +xref: MA:0000232 +xref: MAT:0000162 +xref: MIAA:0000162 +xref: NCIT:C12462 +xref: TAO:0000200 +xref: UMLS:C0017070 {source="ncithesaurus:Dorsal_Root_Ganglion"} +xref: UMLS:C0017070 {source="BIRNLEX:2596"} +xref: VHOG:0000222 +xref: XAO:0000210 +xref: ZFA:0000200 +is_a: UBERON:0001800 {source="MA"} ! sensory ganglion +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0000045 ! ganglion +intersection_of: extends_fibers_into UBERON:0001780 ! spinal nerve +intersection_of: extends_fibers_into UBERON:0002261 ! dorsal root of spinal cord +relationship: develops_from UBERON:0003083 {source="https://doi.org/10.1101/gr.157586.113", source="https://github.com/obophenotype/uberon/wiki/The-neural-crest", source="ZFA"} ! trunk neural crest +relationship: extends_fibers_into UBERON:0001780 ! spinal nerve +relationship: extends_fibers_into UBERON:0002261 ! dorsal root of spinal cord +relationship: located_in UBERON:0006692 ! vertebral canal + +[Term] +id: UBERON:0000045 +name: ganglion +def: "A biological tissue mass, most commonly a mass of nerve cell bodies." [http://en.wikipedia.org/wiki/Ganglion, https://github.com/obophenotype/uberon/issues/300] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "ganglia" RELATED [] +synonym: "neural ganglion" RELATED [BTO:0000497] +xref: AAO:0010426 +xref: AEO:0000135 +xref: BAMS:G +xref: BTO:0000497 +xref: CALOHA:TS-0397 +xref: EFO:0000899 +xref: EHDAA2:0003135 +xref: EHDAA:2897 +xref: EHDAA:4662 +xref: EHDAA:5621 +xref: EHDAA:918 +xref: EMAPA:32846 +xref: EV:0100372 +xref: FBbt:00005137 +xref: FMA:5884 +xref: http://en.wikipedia.org/wiki/Ganglion +xref: http://linkedlifedata.com/resource/umls/id/C0017067 +xref: MA:0002406 +xref: MAT:0000207 +xref: MAT:0000343 +xref: MESH:D005724 +xref: MIAA:0000207 +xref: MIAA:0000343 +xref: NCIT:C12719 +xref: NLXANAT:100302 +xref: TAO:0000190 +xref: TGMA:0001016 +xref: UMLS:C0017067 {source="ncithesaurus:Ganglion"} +xref: VHOG:0000156 +xref: WBbt:0005189 +xref: XAO:0000209 +xref: ZFA:0000190 +is_a: UBERON:0010001 {source="https://github.com/obophenotype/uberon/issues/702"} ! cell cluster organ +disjoint_from: UBERON:0002420 {inconsistent_with="BTO"} ! basal ganglion +relationship: composed_primarily_of UBERON:0003714 {source="EHDAA2"} ! neural tissue +property_value: dc-contributor https://github.com/cmungall +relationship: develops_from UBERON:0003869 ! presumptive ganglion +relationship: immediate_transformation_of UBERON:0003869 {source="Bgee:AN"} ! presumptive ganglion +relationship: part_of UBERON:0001016 ! nervous system + +[Term] +id: UBERON:0000046 +name: stemma +def: "eye-spots which may be set into a pit to reduce the angles of light that enters and affects the eyespot, to allow the organism to deduce the angle of incoming light" [http://en.wikipedia.org/wiki/Eye#Pit_eyes, http://en.wikipedia.org/wiki/Stemma] +subset: uberon_slim +synonym: "pit eye" EXACT [http://en.wikipedia.org/wiki/Eye#Pit_eyes] +xref: http://en.wikipedia.org/wiki/Stemma +is_a: UBERON:0000047 ! simple eye + +[Term] +id: UBERON:0000047 +name: simple eye +def: "An eye with one concave chamber. Note that 'simple' does not imply a reduced level of complexity or acuity." [http://en.wikipedia.org/wiki/Eye#Simple_eyes] +subset: grouping_class +subset: uberon_slim +xref: Simple_eyes +xref: TGMA:0000729 +is_a: UBERON:0000970 ! eye + +[Term] +id: UBERON:0000048 +name: pinhole eye +def: "Simple eye that has a small aperture (which may be adjustable) and deep pit. It is only found in the nautiloids." [http://en.wikipedia.org/wiki/Pinhole_eye, https://doi.org/10.1146/annurev.ne.15.030192.000245] +subset: grouping_class +subset: uberon_slim +xref: Pinhole:eye +is_a: UBERON:0000047 ! simple eye + +[Term] +id: UBERON:0000049 +name: spherical lensed eye +def: "simple eye that consists of a lens of one refractive index" [http://en.wikipedia.org/wiki/Eye#Spherical_lensed_eye] +subset: grouping_class +is_a: UBERON:0000047 ! simple eye + +[Term] +id: UBERON:0000050 +name: simple eye with multiple lenses +def: "simple eye that has two or more lenses. Some marine organisms bear more than one lens; for instance the copeopod Pontella has three. The outer has a parabolic surface, countering the effects of spherical aberration while allowing a sharp image to be formed. Copilla's eyes have two lenses, which move in and out like a telescope" [http://en.wikipedia.org/wiki/Eye#Multiple_lenses] +subset: grouping_class +subset: uberon_slim +xref: Multiple_lenses +is_a: UBERON:0000047 ! simple eye +relationship: has_component UBERON:0005389 {min_cardinality="2"} ! transparent eye structure + +[Term] +id: UBERON:0000051 +name: fornix of vagina +def: "The deepest portions of the vagina, extending into the recesses created by the vaginal portion of cervix[WP,unvetted]." [http://en.wikipedia.org/wiki/Vaginal_fornix] +subset: uberon_slim +synonym: "fornix" BROAD [] +synonym: "fornix vaginae" EXACT LATIN [FMA:19985, FMA:TA] +synonym: "vaginal fornices" RELATED PLURAL [] +synonym: "vaginal fornix" EXACT [] +xref: FMA:19985 +xref: http://linkedlifedata.com/resource/umls/id/C0227794 +xref: http://www.snomedbrowser.com/Codes/Details/245475003 +xref: NCIT:C33848 +xref: UMLS:C0227794 {source="ncithesaurus:Vaginal_Fornix"} +xref: Vaginal:fornix +is_a: UBERON:0002553 ! anatomical cavity +disjoint_from: UBERON:0000052 ! fornix of brain +relationship: part_of UBERON:0000996 ! vagina + +[Term] +id: UBERON:0000052 +name: fornix of brain +def: "A C-shaped bundle of fibres (axons) in the brain, and carries signals from the hippocampus to the mammillary bodies and septal nuclei. It is typically divided into the columns (crus), body, commissure and the pre-commissural and post-commissural fornix (MM)." [BIRNLEX:705] +subset: pheno_slim +subset: uberon_slim +synonym: "brain fornix" EXACT [] +synonym: "cerebral fornix" EXACT [] +synonym: "forebrain fornix" EXACT [FMA:61965] +synonym: "fornix" BROAD [] +synonym: "fornix (column and body of fornix)" RELATED [FMA:61965] +synonym: "fornix cerebri" RELATED LATIN [NeuroNames:268] +synonym: "fornix hippocampus" RELATED [] +synonym: "fornix of neuraxis" EXACT [FMA:83865] +synonym: "hippocampus fornix" RELATED [] +synonym: "neuraxis fornix" EXACT [FMA:83865] +xref: BAMS:f +xref: BIRNLEX:705 +xref: DHBA:10576 +xref: DMBA:17767 +xref: EMAPA:35352 +xref: FMA:61965 {notes="inferred"} +xref: FMA:83865 +xref: HBA:9249 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=268 {source="BIRNLEX:705"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=268 +xref: http://en.wikipedia.org/wiki/fornix_of_brain +xref: http://linkedlifedata.com/resource/umls/id/C0152334 +xref: http://linkedlifedata.com/resource/umls/id/C0458370 +xref: http://www.snomedbrowser.com/Codes/Details/279302004 +xref: MA:0002747 +xref: NCIT:C32289 +xref: UMLS:C0152334 {source="BIRNLEX:705"} +xref: UMLS:C0458370 {source="ncithesaurus:Cerebral_Fornix"} +is_a: UBERON:0007702 ! tract of brain +relationship: extends_fibers_into UBERON:0002206 ! mammillary body +relationship: extends_fibers_into UBERON:0002663 ! septal nuclear complex +relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation + +[Term] +id: UBERON:0000053 +name: macula lutea +def: "An oval area in the retina, usually located temporal to the posterior pole of the eye and slightly below the level of the optic disk. It is characterized by the presence of a yellow pigment diffusely permeating the inner layers, contains the fovea centralis in its center, and provides the best phototopic visual acuity. It is devoid of retinal blood vessels, except in its periphery, and receives nourishment from the choriocapillaris of the choroid. (From Cline et al., Dictionary of Visual Science, 4th ed)" [MESH:A09.371.729.522] +subset: pheno_slim +subset: uberon_slim +synonym: "macula" RELATED [] +synonym: "macula flava retinae" RELATED [BTO:0003015] +synonym: "macula retinae" RELATED [BTO:0003015] +synonym: "maculae" RELATED [] +xref: BIRNLEX:2540 +xref: BTO:0003015 +xref: EMAPA:36516 +xref: EV:0100349 +xref: FMA:58637 +xref: GAID:909 +xref: http://en.wikipedia.org/wiki/Macula_of_retina +xref: http://linkedlifedata.com/resource/umls/id/C0450295 +xref: http://linkedlifedata.com/resource/umls/id/C1284755 +xref: http://www.snomedbrowser.com/Codes/Details/362517001 +xref: MA:0001306 +xref: MESH:D008266 +xref: NCIT:C26464 +xref: NCIT:C33044 +xref: UMLS:C0450295 {source="ncithesaurus:Macula_Lutea"} +xref: UMLS:C0450295 {source="BIRNLEX:2540"} +xref: UMLS:C1284755 {source="BIRNLEX:2540"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +disjoint_from: UBERON:0000054 ! macula +relationship: part_of UBERON:0000966 ! retina + +[Term] +id: UBERON:0000054 +name: macula +def: "Thickened areas of the saccule or utricle where the termination of the vestibular nerve occurs[MESH,modified]." [MESH:A09.246.631.909.625.125] +subset: pheno_slim +subset: uberon_slim +synonym: "acoustic macula" RELATED [MESH:A09.246.631.909.625.125] +synonym: "acoustic maculae" RELATED PLURAL [MESH:A09.246.631.909.625.125] +synonym: "macula" EXACT [] +synonym: "maculae" EXACT PLURAL [] +synonym: "sensory macula" EXACT [ZFA:0000386] +synonym: "sensory patch" EXACT [ZFA:0000386] +xref: GAID:777 +xref: MESH:D008267 +xref: TAO:0000386 +xref: ZFA:0000386 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001846 ! internal ear + +[Term] +id: UBERON:0000055 +name: vessel +def: "A tubular structure that contains, conveys body fluid, such as blood or lymph." [https://orcid.org/0000-0002-6601-2165] +subset: grouping_class +subset: pheno_slim +is_a: UBERON:0004111 ! anatomical conduit +relationship: channel_for UBERON:0006314 ! bodily fluid + +[Term] +id: UBERON:0000056 +name: ureter +def: "Muscular duct that propels urine from the kidneys to the urinary bladder, or related organs." [GO:0090189, http://en.wikipedia.org/wiki/Ureter] +subset: efo_slim +subset: major_organ +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "metanephric duct" RELATED [ISBN:0073040584, VHOG:0000605] +xref: AAO:0010254 +xref: BTO:0001409 +xref: CALOHA:TS-1084 +xref: EFO:0000930 +xref: EHDAA2:0002139 +xref: EHDAA:9341 +xref: EMAPA:17950 +xref: EV:0100097 +xref: FMA:9704 +xref: GAID:438 +xref: galen:Ureter +xref: http://en.wikipedia.org/wiki/Ureter +xref: http://linkedlifedata.com/resource/umls/id/C0041951 +xref: http://www.snomedbrowser.com/Codes/Details/302511008 +xref: MA:0000378 +xref: MAT:0000120 +xref: MESH:D014513 +xref: MIAA:0000120 +xref: NCIT:C12416 +xref: OpenCyc:Mx4rvhmm6JwpEbGdrcN5Y29ycA +xref: UMLS:C0041951 {source="ncithesaurus:Ureter"} +xref: VHOG:0000605 +xref: XAO:0000144 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005179 ! pelvic region element +is_a: UBERON:0006555 ! excretory tube +is_a: UBERON:0015212 ! lateral structure +relationship: channel_for UBERON:0001088 ! urine +relationship: channels_from UBERON:0001224 ! renal pelvis +relationship: channels_into UBERON:0001255 ! urinary bladder +relationship: develops_from UBERON:0005081 {source="GO"} ! ureter ureteric bud +relationship: in_lateral_side_of UBERON:0000468 ! multicellular organism +relationship: part_of UBERON:0036295 ! renal pelvis/ureter + +[Term] +id: UBERON:0000057 +name: urethra +def: "the fibromuscular tubular canal through which urine is discharged from the bladder to the exterior via the external urinary meatus; in males, the urethra is joined by the ejaculatory ducts and serves as a passageway for semen during ejaculation, as well as a canal for urine during voiding; in females, the urethra is shorter and emerges above the vaginal opening" [MGI:anna, MP:0000537] +subset: efo_slim +subset: major_organ +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +xref: BTO:0001426 +xref: CALOHA:TS-1132 +xref: EFO:0000931 +xref: EMAPA:30901 +xref: EV:0100099 +xref: FMA:19667 +xref: GAID:390 +xref: galen:Urethra +xref: http://en.wikipedia.org/wiki/Urethra +xref: http://linkedlifedata.com/resource/umls/id/C0041967 +xref: http://www.snomedbrowser.com/Codes/Details/302513006 +xref: MA:0000379 +xref: MAT:0000121 +xref: MESH:D014521 +xref: MIAA:0000121 +xref: NCIT:C12417 +xref: OpenCyc:Mx4rvVjkypwpEbGdrcN5Y29ycA +xref: UMLS:C0041967 {source="ncithesaurus:Urethra"} +xref: VHOG:0001264 +xref: XAO:0000153 +is_a: UBERON:0000062 ! organ +is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: channel_for UBERON:0001088 ! urine +relationship: channels_from UBERON:0001255 ! urinary bladder +relationship: continuous_with UBERON:0001255 ! urinary bladder +relationship: develops_from UBERON:0000164 {notes="pelvic part of UG sinus gives rise to prostatic and membranous parts of urethra", source="Wikipedia"} ! primitive urogenital sinus +relationship: develops_from UBERON:0013241 {source="Wikipedia"} ! embryonic urethral groove +relationship: part_of UBERON:0001556 ! lower urinary tract + +[Term] +id: UBERON:0000058 +name: duct +def: "A tubular structure that transports secreted or excreted substances." [http://orcid.org/0000-0002-6601-2165, http://www.siumed.edu/~dking2/intro/glands.htm#ducts] +subset: grouping_class +synonym: "anatomical duct" EXACT [] +synonym: "ducts" RELATED PLURAL [XAO:0004000] +synonym: "exocrine duct" NARROW [] +synonym: "exocrine gland duct" NARROW [] +xref: AAO:0011123 +xref: Duct:(anatomy) +xref: FBbt:00100314 +xref: FMA:30320 +xref: galen:Duct +xref: http://linkedlifedata.com/resource/umls/id/C0687028 +xref: http://www.snomedbrowser.com/Codes/Details/91726008 +xref: NCIT:C12948 +xref: TAO:0005171 +xref: UMLS:C0687028 {source="ncithesaurus:Duct"} +xref: XAO:0004000 +xref: ZFA:0005171 +is_a: UBERON:0000063 ! organ subunit +relationship: conduit_for UBERON:0000463 ! organism substance +relationship: has_part UBERON:0034969 ! epithelial layer of duct + +[Term] +id: UBERON:0000059 +name: large intestine +def: "A subdivision of the digestive tract that connects the small intestine to the cloaca or anus. Lacks or has few villi[Kardong]." [http://en.wikipedia.org/wiki/Large_intestine_(anatomy), ISBN:0073040584] +subset: efo_slim +subset: major_organ +subset: organ_slim +subset: pheno_slim +synonym: "intestinum crassum" RELATED [BTO:0000706] +xref: AAO:0010396 +xref: BTO:0000706 +xref: CALOHA:TS-1306 +xref: EFO:0000840 +xref: EMAPA:19252 +xref: EV:0100077 +xref: FMA:7201 +xref: GAID:306 +xref: galen:LargeIntestine +xref: http://en.wikipedia.org/wiki/Large_intestine_(anatomy) +xref: http://linkedlifedata.com/resource/umls/id/C0021851 +xref: http://www.snomedbrowser.com/Codes/Details/181254001 +xref: MA:0000333 +xref: MESH:A03.492.411.495 +xref: MIAA:0000046 +xref: NCIT:C12379 +xref: OpenCyc:Mx4rvVkF5pwpEbGdrcN5Y29ycA +xref: UMLS:C0021851 {source="ncithesaurus:Large_Intestine"} +xref: VHOG:0000054 +xref: XAO:0000131 +is_a: UBERON:0004921 {source="cjm"} ! subdivision of digestive tract +is_a: UBERON:0013765 ! digestive system element +relationship: contributes_to_morphology_of UBERON:0000160 ! intestine +relationship: part_of UBERON:0000160 ! intestine +relationship: part_of UBERON:0004907 ! lower digestive tract + +[Term] +id: UBERON:0000060 +name: anatomical wall +alt_id: UBERON:0009915 +def: "Organ component adjacent to an organ cavity and which consists of a maximal aggregate of organ component layers." [FMA:82482] +subset: upper_level +synonym: "organ wall" RELATED [FMA:82482] +synonym: "wall" BROAD [] +synonym: "wall of organ" EXACT [FMA:82482] +xref: EMAPA:25036 +xref: FMA:82482 +xref: galen:Wall +is_a: UBERON:0000064 ! organ part +relationship: adjacent_to UBERON:0002553 ! anatomical cavity +relationship: has_part UBERON:0004923 ! organ component layer + +[Term] +id: UBERON:0000061 +name: anatomical structure +def: "Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome." [CARO:0000003] +subset: upper_level +synonym: "biological structure" EXACT [] +synonym: "connected biological structure" EXACT [CARO:0000003] +xref: AAO:0010825 +xref: AEO:0000003 +xref: BILA:0000003 +xref: CARO:0000003 +xref: EHDAA2:0003003 +xref: EMAPA:0 +xref: FBbt:00007001 +xref: FMA:305751 +xref: FMA:67135 +xref: GAID:781 +xref: HAO:0000003 +xref: http://dbpedia.org/ontology/AnatomicalStructure +xref: http://www.snomedbrowser.com/Codes/Details/362889002 +xref: MA:0003000 +xref: MESH:D000825 +xref: TAO:0000037 +xref: TGMA:0001823 +xref: VHOG:0001759 +xref: XAO:0003000 +xref: ZFA:0000037 +is_a: UBERON:0000465 ! material anatomical entity +relationship: existence_ends_during_or_before UBERON:0000071 ! death stage +relationship: existence_starts_during_or_after UBERON:0000106 ! zygote stage + +[Term] +id: UBERON:0000062 +name: organ +def: "Anatomical structure that performs a specific function or group of functions [WP]." [http://en.wikipedia.org/wiki/Organ_(anatomy)] +subset: upper_level +synonym: "anatomical unit" RELATED [] +synonym: "body organ" RELATED [] +synonym: "element" RELATED [http://orcid.org/0000-0002-6601-2165] +xref: BIRNLEX:4 +xref: CARO:0020004 +xref: EFO:0000634 +xref: EMAPA:35949 +xref: ENVO:01000162 +xref: FMA:67498 +xref: http://linkedlifedata.com/resource/umls/id/C0178784 +xref: http://www.snomedbrowser.com/Codes/Details/272625005 +xref: MA:0003001 +xref: NCIT:C13018 +xref: OpenCyc:Mx4rv5XMb5wpEbGdrcN5Y29ycA +xref: OpenCyc:Mx4rwP3iWpwpEbGdrcN5Y29ycA +xref: Organ:(anatomy) +xref: UMLS:C0178784 {source="ncithesaurus:Organ"} +xref: WBbt:0003760 +is_a: UBERON:0010000 ! multicellular anatomical structure +disjoint_from: UBERON:0002095 {source="http://www.ncbi.nlm.nih.gov/pubmed/28192867"} ! mesentery +disjoint_from: UBERON:0034921 ! multi organ part structure +relationship: existence_starts_during_or_after UBERON:0000111 ! organogenesis stage +relationship: has_boundary UBERON:0006984 ! anatomical surface +relationship: part_of UBERON:0000467 ! anatomical system + +[Term] +id: UBERON:0000063 +name: organ subunit +def: "A part of an organ that constitutes a distinct modular sub-unit. In some cases, the organ may also contain other sub-units of identical or similar types, in other cases this may be a distinct entity." [http://orcid.org/0000-0002-6601-2165] +subset: upper_level +synonym: "organ region with fixed fiat boundary" RELATED [FMA:86140] +synonym: "organ segment" RELATED [FMA:86140] +synonym: "segment of organ" RELATED [FMA:86140] +xref: FMA:86140 +is_a: UBERON:0000064 ! organ part + +[Term] +id: UBERON:0000064 +name: organ part +def: "A multicellular structure that is a part of an organ." [http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: non_informative +subset: upper_level +synonym: "cardinal organ part" EXACT [FMA:82472] +synonym: "regional part of organ" RELATED [BIRNLEX:16] +xref: AAO:0011124 +xref: BIRNLEX:16 +xref: EFO:0000635 +xref: FMA:82472 +xref: http://www.snomedbrowser.com/Codes/Details/113343008 +xref: http://www.snomedbrowser.com/Codes/Details/91717005 +is_a: UBERON:0010000 ! multicellular anatomical structure +relationship: part_of UBERON:0000062 ! organ + +[Term] +id: UBERON:0000065 +name: respiratory tract +def: "Anatomical structure that is part of the respiratory system. In mammals consists of upper and lower tracts" [https://orcid.org/0000-0002-6601-2165] +xref: EHDAA2:0001606 +xref: EHDAA:1568 +xref: EHDAA:2219 +xref: EMAPA:16737 +xref: FMA:265130 +xref: http://www.snomedbrowser.com/Codes/Details/361110005 +xref: OpenCyc:Mx4rvvM--pwpEbGdrcN5Y29ycA +xref: VHOG:0000393 +is_a: UBERON:0001005 ! respiratory airway +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: develops_from UBERON:0007026 {source="NCBIBook:NBK10107"} ! presumptive gut +relationship: develops_from UBERON:0008947 ! respiratory primordium + +[Term] +id: UBERON:0000066 +name: fully formed stage +def: "The stage of development at which the animal is fully formed, including immaturity and maturity. Includes both sexually immature stage, and adult stage." [https://orcid.org/0000-0002-6601-2165] +subset: efo_slim +synonym: "adult stage" BROAD [] +synonym: "fully formed animal stage" EXACT [] +synonym: "juvenile-adult stage" EXACT [] +xref: BilaDO:0000004 +xref: BTO:0001043 +xref: EFO:0001272 +xref: FBdv:00005369 +xref: WBls:0000041 +xref: XtroDO:0000084 +is_a: UBERON:0000105 ! life cycle stage +relationship: part_of UBERON:0000092 ! post-embryonic stage +relationship: preceded_by UBERON:0000111 ! organogenesis stage +relationship: precedes UBERON:0000071 ! death stage + +[Term] +id: UBERON:0000067 +name: obsolete embryo stage part +def: "A stage that is part of the embryo stage." [https://orcid.org/0000-0002-6601-2165] +subset: grouping_class +synonym: "embryonic stage part" EXACT [] +is_obsolete: true + +[Term] +id: UBERON:0000068 +name: embryo stage +def: "A life cycle stage that starts with fertilization and ends with the fully formed embryo." [http://orcid.org/0000-0002-6601-2165] +synonym: "embryogenesis" RELATED [] +synonym: "embryonic stage" EXACT [] +xref: BilaDO:0000002 +xref: EV:0300001 +xref: FBdv:00005289 +xref: FMA:72652 +xref: HsapDv:0000002 +xref: http://www.snomedbrowser.com/Codes/Details/296280003 +xref: MmusDv:0000002 +xref: OGES:000000 +xref: OGES:000022 +xref: WBls:0000003 +xref: WBls:0000092 +xref: WBls:0000102 +xref: XAO:1000012 +is_a: UBERON:0000105 ! life cycle stage +disjoint_from: UBERON:0000092 ! post-embryonic stage +relationship: precedes UBERON:0000066 ! fully formed stage +relationship: precedes UBERON:0000092 ! post-embryonic stage + +[Term] +id: UBERON:0000069 +name: larval stage +def: "A distinct juvenile stage many animals undergo before metamorphosis into adults. Animals with indirect development such as insects, amphibians, or cnidarians typically have a larval phase of their life cycle." [http://en.wikipedia.org/wiki/Larva] +subset: efo_slim +synonym: "ammocoete" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "ammocoete stage" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "bipinnaria" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "bipinnaria stage" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "caterpillar" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "caterpillar stage" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "glochidium" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "glochidium stage" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "grub" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "grub stage" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "larva" RELATED [] +synonym: "larva stage" EXACT [] +synonym: "leptocephalus" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "leptocephalus stage" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "maggot" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "maggot stage" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "metacestode" NARROW SENSU [BTO:0000859] +synonym: "naiad, nymph" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "naiad, nymph stage" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "nauplius" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "nauplius stage" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "nymph" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "nymph stage" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "planula" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "planula stage" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "tornaria" NARROW SENSU [NCBITaxon:10219] +synonym: "trochophore" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "trochophore stage" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "veliger" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "veliger stage" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "wriggler" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "wriggler stage" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "zoea" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "zoea stage" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +xref: BTO:0000915 +xref: BTO:0000954 +xref: EFO:0001303 +xref: FBdv:00005336 +xref: http://en.wikipedia.org/wiki/Larva +xref: MIAA:0000400 +xref: OGES:000008 +xref: ZFS:0000048 +is_a: UBERON:0000105 ! life cycle stage +relationship: immediately_preceded_by UBERON:0000068 ! embryo stage +relationship: part_of UBERON:0000092 ! post-embryonic stage + +[Term] +id: UBERON:0000070 +name: pupal stage +def: "A life cycle stage of holometabolous insects in which the organism is a pupa and starts with the larval-pupal apolysis and ends with pupal-adult apolysis." [http://en.wikipedia.org/wiki/Pupa, https://github.com/obophenotype/uberon/issues/562] +synonym: "aurelia stage" NARROW [http://en.wikipedia.org/wiki/Pupa, NCBITaxon:37572] +synonym: "chrysalides stage" NARROW [http://en.wikipedia.org/wiki/Pupa, NCBITaxon:37572] +synonym: "chrysalis stage" NARROW [http://en.wikipedia.org/wiki/Pupa, NCBITaxon:37572] +synonym: "pupa stage" EXACT [] +xref: FBdv:00005349 +xref: http://en.wikipedia.org/wiki/Pupa +is_a: UBERON:0000105 ! life cycle stage +property_value: dc-contributor https://github.com/ANiknejad +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/dosumis +property_value: dc-contributor https://github.com/fbastian +property_value: dc-contributor https://github.com/mmc46 +relationship: immediately_preceded_by UBERON:0000069 ! larval stage +relationship: part_of UBERON:0000092 ! post-embryonic stage + +[Term] +id: UBERON:0000071 +name: death stage +def: "End of the life of an organism." [XAO:0000437] +synonym: "death" RELATED [] +xref: XAO:0000437 +xref: XtroDO:0000085 +is_a: UBERON:0000105 ! life cycle stage +relationship: ends UBERON:0000104 ! life cycle + +[Term] +id: UBERON:0000072 +name: proximo-distal subdivision of respiratory tract +def: "An section of a respiratory tract." [http://orcid.org/0000-0002-6601-2165] +subset: non_informative +synonym: "respiratory tract" RELATED [MA:0000434] +synonym: "subdivision of respiratory tract" RELATED [] +xref: EMAPA:16737 +xref: FMA:45660 +xref: MA:0000434 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0013522 ! subdivision of tube +intersection_of: UBERON:0013522 ! subdivision of tube +intersection_of: part_of UBERON:0000065 ! respiratory tract +relationship: part_of UBERON:0000065 ! respiratory tract + +[Term] +id: UBERON:0000073 +name: regional part of nervous system +def: "Any part or collection of parts of the central or peripheral nervous system. Parts may span both CNS and PNS." [BIRNLEX:1157] +subset: non_informative +subset: upper_level +synonym: "part of nervous system" EXACT [BIRNLEX:1157] +xref: BIRNLEX:1157 +xref: http://linkedlifedata.com/resource/umls/id/C1518256 +xref: http://www.snomedbrowser.com/Codes/Details/25087005 +xref: NCIT:C13040 +xref: UMLS:C1518256 {source="ncithesaurus:Nervous_System_Part"} +is_a: UBERON:0000481 ! multi-tissue structure +intersection_of: UBERON:0000481 ! multi-tissue structure +intersection_of: part_of UBERON:0001016 ! nervous system +relationship: part_of UBERON:0001016 ! nervous system +created_by: Melissa Haendel +creation_date: 2009-06-18T09:00:04Z + +[Term] +id: UBERON:0000074 +name: renal glomerulus +def: "A capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the vertebrate kidney[GO]." [http://en.wikipedia.org/wiki/Glomerulus, MP:0005325] +subset: efo_slim +subset: pheno_slim +subset: vertebrate_core +synonym: "glomerular capillary tuft" RELATED [ZFA:0001288] +synonym: "glomerular tuft" RELATED INCONSISTENT [] +synonym: "glomerulus" BROAD [] +synonym: "glomerulus renis" RELATED LATIN [http://en.wikipedia.org/wiki/Glomerulus] +synonym: "Malphigian glomerulus" RELATED MISSPELLING [BTO:0000530] +synonym: "Malpighian glomerulus" RELATED [http://medical-dictionary.thefreedictionary.com/malpighian+glomerulus] +synonym: "Malpighian tuft" RELATED [http://medical-dictionary.thefreedictionary.com/malpighian+glomerulus] +synonym: "renal corpuscle" RELATED INCONSISTENT [] +synonym: "renal glomeruli" EXACT [TAO:0001288] +xref: BTO:0000530 +xref: CALOHA:TS-0862 +xref: EFO:0003667 +xref: EMAPA:28329 +xref: EV:0100386 +xref: FMA:15624 +xref: http://en.wikipedia.org/wiki/Glomerulus +xref: http://linkedlifedata.com/resource/umls/id/C0022663 +xref: http://www.snomedbrowser.com/Codes/Details/362217000 +xref: MA:0001657 +xref: MESH:D007678 +xref: NCIT:C13250 +xref: TAO:0001288 +xref: UMLS:C0022663 {source="ncithesaurus:Glomerulus"} +xref: ZFA:0001288 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +disjoint_from: UBERON:0001047 ! neural glomerulus +relationship: develops_from UBERON:0005749 ! glomerular tuft +relationship: part_of UBERON:0001229 {source="FMA", source="MA"} ! renal corpuscle +relationship: surrounded_by UBERON:0001230 ! glomerular capsule +created_by: Melissa Haendel +creation_date: 2009-06-18T09:26:37Z + +[Term] +id: UBERON:0000075 +name: subdivision of skeletal system +alt_id: UBERON:0010322 +def: "Anatomical cluster consisting of the skeletal elements and articular elements that are part of an individual subdivision of the organism." [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +subset: non_informative +synonym: "skeletal system part" RELATED [] +synonym: "skeletal system subdivision" EXACT [FMA:85544] +xref: FMA:85544 +xref: galen:ComplexSkeletalStructure +xref: http://linkedlifedata.com/resource/umls/id/C1519343 +xref: http://www.snomedbrowser.com/Codes/Details/118966000 +xref: NCIT:C34076 +xref: UMLS:C1519343 {source="ncithesaurus:Skeletal_System_Part"} +is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision +relationship: composed_primarily_of UBERON:0004765 ! skeletal element +relationship: part_of UBERON:0001434 ! skeletal system + +[Term] +id: UBERON:0000076 +name: external ectoderm +def: "The surface (external) layer of ectoderm which begins to proliferate shortly after separation from the neuroectoderm." [MGI:anna, MP:0012532] +subset: pheno_slim +synonym: "surface (external) ectoderm" EXACT [] +synonym: "surface ectoderm" EXACT [MP:0012532] +xref: EHDAA2:0001968 +xref: EHDAA:1494 +xref: EHDAA:350 +xref: EHDAA:4784 +xref: EHDAA:4790 +xref: EHDAA:4796 +xref: EHDAA:7860 +xref: EMAPA:16096 +xref: External:ectoderm +xref: FMA:87656 +xref: http://linkedlifedata.com/resource/umls/id/C1515087 +xref: NCIT:C34309 +xref: UMLS:C1515087 {source="ncithesaurus:Surface_Ectoderm"} +is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0000924 {source="EHDAA2"} ! ectoderm + +[Term] +id: UBERON:0000077 +name: mixed endoderm/mesoderm-derived structure +def: "An anatomical structure that develops from the endoderm and the mesoderm." [https://orcid.org/0000-0002-6601-2165] +subset: grouping_class +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0000061 ! anatomical structure +intersection_of: develops_from UBERON:0000925 ! endoderm +intersection_of: develops_from UBERON:0000926 ! mesoderm + +[Term] +id: UBERON:0000078 +name: mixed ectoderm/mesoderm/endoderm-derived structure +def: "An anatomical structure that develops from the ectoderm, mesoderm and endoderm." [https://orcid.org/0000-0002-6601-2165] +subset: grouping_class +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000061 ! anatomical structure +intersection_of: develops_from UBERON:0000924 ! ectoderm +intersection_of: develops_from UBERON:0000925 ! endoderm +intersection_of: develops_from UBERON:0000926 ! mesoderm + +[Term] +id: UBERON:0000079 +name: male reproductive system +def: "The organs associated with producing offspring in the gender that produces spermatozoa." [MP:0001145] +subset: efo_slim +subset: pheno_slim +synonym: "genitalia of male organism" EXACT [OBOL:automatic] +synonym: "male genital organ" RELATED [BTO:0000082] +synonym: "male genital system" EXACT [FMA:45664] +synonym: "male genital tract" RELATED [] +synonym: "male genitalia" EXACT [] +synonym: "male genitals" EXACT [] +synonym: "male organism genitalia" EXACT [OBOL:automatic] +synonym: "male organism reproductive system" EXACT [OBOL:automatic] +synonym: "male reproductive tract" RELATED [MA:0000396] +synonym: "reproductive system of male organism" EXACT [OBOL:automatic] +synonym: "systema genitale masculinum" RELATED [BTO:0000082] +xref: BTO:0000082 +xref: CALOHA:TS-1310 +xref: EFO:0000970 +xref: EHDAA2:0001054 +xref: EHDAA:8136 +xref: EMAPA:17968 +xref: EV:0100101 +xref: FBbt:00004927 +xref: FMA:45664 +xref: GAID:386 +xref: HAO:0000505 +xref: http://en.wikipedia.org/wiki/Male_reproductive_system_(human) +xref: http://linkedlifedata.com/resource/umls/id/C0017422 +xref: http://linkedlifedata.com/resource/umls/id/C1963704 +xref: http://www.snomedbrowser.com/Codes/Details/361340001 +xref: MA:0000396 +xref: MESH:D005837 +xref: NCIT:C12722 +xref: OpenCyc:Mx4rvViCepwpEbGdrcN5Y29ycA +xref: TGMA:0000634 +xref: UMLS:C0017422 {source="ncithesaurus:Male_Genitalia"} +xref: UMLS:C1963704 {source="ncithesaurus:Male_Reproductive_System"} +xref: VHOG:0000725 +xref: WBbt:0008423 +xref: XAO:0000155 +is_a: UBERON:0000990 ! reproductive system +intersection_of: UBERON:0000990 ! reproductive system +intersection_of: part_of UBERON:0003101 ! male organism +disjoint_from: UBERON:0000474 ! female reproductive system +relationship: part_of UBERON:0003101 ! male organism + +[Term] +id: UBERON:0000080 +name: mesonephros +def: "The second stage of the kidney. It serves as the main excretory organ of aquatic vertebrates and as a temporary embryonic kidney in higher vertebrates. It is composed of the mesonephric duct (also called the Wolffian duct), mesonephric tubules, and associated capillary tufts. A single tubule and its associated capillary tuft is called a mesonephric excretory unit; these units are similar in structure and function to nephrons of the adult kidney. The mesonephros is derived from intermediate mesoderm in the vertebrate embryo." [GO:0001823, http://en.wikipedia.org/wiki/Mesonephros] +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: vertebrate_core +synonym: "amphibian adult kidney" RELATED [XAO:0000141] +synonym: "corpus Wolffi" RELATED [BTO:0001542] +synonym: "mesonephric kidney" EXACT [XAO:0000141] +synonym: "mesonephroi" EXACT PLURAL [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] +synonym: "middle kidney" RELATED [BTO:0001542] +synonym: "opisthonephros" RELATED [VHOG:0000038, XAO:0000141] +synonym: "opisto nephros" RELATED [] +synonym: "opistonephros" RELATED [http://www.usm.maine.edu/bio/courses/bio205/bio205_26_sex.html] +synonym: "Wolffian body" EXACT [BTO:0001542, GOC:yaf, http://en.wikipedia.org/wiki/Mesonephros, MESH:A16.254.500] +xref: AAO:0010384 +xref: BTO:0001542 +xref: CALOHA:TS-0624 +xref: EFO:0000928 +xref: EHDAA2:0001130 +xref: EHDAA:1581 +xref: EHDAA:5903 +xref: EMAPA:16744 +xref: FMA:72171 +xref: GAID:1308 +xref: http://en.wikipedia.org/wiki/Mesonephros +xref: http://linkedlifedata.com/resource/umls/id/C0025492 +xref: http://www.snomedbrowser.com/Codes/Details/308799002 +xref: MESH:D001755 +xref: NCIT:C26467 +xref: TAO:0000529 +xref: UMLS:C0025492 {source="ncithesaurus:Mesonephros"} +xref: VHOG:0000038 +xref: XAO:0000141 +xref: ZFA:0000529 +is_a: UBERON:0002113 ! kidney +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: develops_from UBERON:0002120 ! pronephros + +[Term] +id: UBERON:0000081 +name: metanephros +def: "In mammals, the metanephros is the excretory organ of the fetus, which develops into the mature kidney and is formed from the rear portion of the nephrogenic cord. The metanephros is an endocrine and metabolic organ that filters the blood and excretes the end products of body metabolism in the form of urine[GO]" [GO:0001656, http://en.wikipedia.org/wiki/Metanephros#Metanephros] +subset: organ_slim +subset: pheno_slim +synonym: "definite kidney" RELATED [BTO:0001543] +synonym: "definitive kidney" RELATED [BTO:0001543] +synonym: "hind kidney" RELATED [BTO:0001543] +synonym: "metanephric kidney" RELATED [VHOG:0000039] +synonym: "metanephron" EXACT [BTO:0001543] +xref: BTO:0001543 +xref: EHDAA2:0001137 +xref: EHDAA:3089 +xref: EHDAA:5911 +xref: EMAPA:17373 +xref: EMAPA_RETIRED:17207 +xref: FMA:72172 +xref: http://linkedlifedata.com/resource/umls/id/C0231049 +xref: http://www.snomedbrowser.com/Codes/Details/308797000 +xref: Metanephros +xref: NCIT:C34209 +xref: UMLS:C0231049 {source="ncithesaurus:Metanephros"} +xref: VHOG:0000039 +is_a: UBERON:0002113 ! kidney +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: developmentally_replaces UBERON:0000080 {source="ISBN:9780878932504"} ! mesonephros +relationship: develops_from UBERON:0003220 {evidence="definitional"} ! metanephric mesenchyme +relationship: develops_from UBERON:0005080 {source="GO"} ! metanephric ureteric bud +relationship: develops_from UBERON:0005753 ! caudal part of nephrogenic cord +relationship: existence_ends_during UBERON:0000066 ! fully formed stage + +[Term] +id: UBERON:0000082 +name: adult mammalian kidney +def: "A kidney at the most advanced stage of development in a mammal." [http://en.wikipedia.org/wiki/Kidney_development, https://github.com/obophenotype/uberon/issues/1232] +xref: BTO:0000671 +xref: CALOHA:TS-0510 +xref: EFO:0000929 +xref: EV:0100096 +xref: FMA:7203 +xref: GAID:423 +xref: galen:Kidney +xref: http://www.snomedbrowser.com/Codes/Details/181414000 +xref: MA:0000368 +xref: MAT:0000119 +xref: MESH:D007668 +xref: MIAA:0000119 +xref: NCIT:C12415 +xref: OpenCyc:Mx4rvVjlYpwpEbGdrcN5Y29ycA +is_a: UBERON:0002113 ! kidney +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: develops_from UBERON:0000081 ! metanephros + +[Term] +id: UBERON:0000083 +name: mesonephric tubule +def: "A mesonephric tubule is an epithelial tube that is part of the mesonephros[GO]. Genital ridge that is next to the mesonephros[WP]." [http://en.wikipedia.org/wiki/Mesonephric_tubules] +synonym: "renal tubules" RELATED PLURAL [VHOG:0000500] +synonym: "tubuli mesonephrici" RELATED LATIN [http://en.wikipedia.org/wiki/Mesonephric_tubules] +xref: AAO:0010389 +xref: EHDAA2:0001134 +xref: EMAPA:16747 +xref: Mesonephric:tubules +xref: VHOG:0000500 +xref: XAO:0000148 +is_a: UBERON:0003914 ! epithelial tube +is_a: UBERON:0005103 ! mesonephric epithelium +is_a: UBERON:0006555 ! excretory tube +intersection_of: UBERON:0003914 ! epithelial tube +intersection_of: part_of UBERON:0000080 ! mesonephros + +[Term] +id: UBERON:0000084 +name: ureteric bud +def: "An epithelial swelling on the Wolffian duct that elongates to invade the adjacent metanephric mesenchyme[MP]" [http://www.ncbi.nlm.nih.gov/pubmed/19828308, MP:0010979] +subset: pheno_slim +synonym: "diverticulum" RELATED [BTO:0001646] +synonym: "diverticulum metanephricum" RELATED LATIN [http://en.wikipedia.org/wiki/Ureteric_bud] +synonym: "gemma ureterica" RELATED LATIN [http://en.wikipedia.org/wiki/Ureteric_bud] +synonym: "metanephric bud" RELATED [BTO:0001646] +synonym: "metanephric diverticulum" RELATED [http://en.wikipedia.org/wiki/Metanephros#Metanephros] +synonym: "ureteric ampulla" RELATED [] +synonym: "ureteric diverticulum" RELATED [VHOG:0000541] +xref: BTO:0001646 +xref: EHDAA2:0002140 +xref: EHDAA:3091 +xref: EHDAA:5917 +xref: EMAPA:17209 +xref: http://linkedlifedata.com/resource/umls/id/C1284058 +xref: http://www.snomedbrowser.com/Codes/Details/361528000 +xref: NCIT:C34207 +xref: UMLS:C1284058 {source="ncithesaurus:Metanephric_Diverticulum"} +xref: Ureteric:bud +xref: VHOG:0000541 +is_a: UBERON:0000083 ! mesonephric tubule +is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac +is_a: UBERON:0034969 ! epithelial layer of duct +relationship: developmentally_induced_by UBERON:0003220 {source="ISBN:9780878932504"} ! metanephric mesenchyme +relationship: develops_from UBERON:0003074 {source="EHDAA2"} ! mesonephric duct +relationship: part_of UBERON:0003074 ! mesonephric duct + +[Term] +id: UBERON:0000085 +name: morula +def: "A spherical embryonic mass of blastomeres formed before the blastula and resulting from cleavage of the fertilized ovum." [MP:0012130] +subset: pheno_slim +synonym: "morula (2-16 cells)" RELATED [EHDAA2:0000005] +xref: BTO:0001508 +xref: EHDAA2:0000005 +xref: FMA:292334 +xref: GAID:1295 +xref: http://en.wikipedia.org/wiki/Morula +xref: http://linkedlifedata.com/resource/umls/id/C0026573 +xref: http://www.snomedbrowser.com/Codes/Details/361474003 +xref: MESH:A16.254.270.550 +xref: NCIT:C34212 +xref: UMLS:C0026573 {source="ncithesaurus:Morula"} +is_a: UBERON:0000922 ! embryo +relationship: existence_ends_during UBERON:0000107 ! cleavage stage +relationship: existence_starts_during UBERON:0000107 ! cleavage stage +relationship: part_of UBERON:0004716 {source="EHDAA2"} ! conceptus +relationship: surrounded_by UBERON:0000086 ! zona pellucida + +[Term] +id: UBERON:0000086 +name: zona pellucida +def: "A glycoprotein membrane surrounding the plasma membrane of an oocyte. It is a vital constitutive part of the latter, external but not extraneous to it. The zona pellucida first appears in multilaminar primary oocytes." [http://en.wikipedia.org/wiki/Zona_pellucida] +subset: pheno_slim +subset: vertebrate_core +synonym: "oolemma" RELATED [BTO:0003135] +synonym: "pellucid zone" RELATED [BTO:0003135] +synonym: "striated membrane" RELATED [BTO:0003135] +synonym: "vitelline envelope" RELATED [] +synonym: "vitelline membrane" RELATED [] +synonym: "zona pellucida - vitelline membrane" BROAD [VHOG:0000720] +synonym: "zona radiata" RELATED [BTO:0003135] +synonym: "zona striata" RELATED [BTO:0003135] +xref: BTO:0003135 +xref: EHDAA2:0002220 +xref: EHDAA:31 +xref: EHDAA:62 +xref: EMAPA:16035 +xref: FMA:18674 +xref: GAID:410 +xref: http://linkedlifedata.com/resource/umls/id/C0043519 +xref: MA:0001715 +xref: MESH:D015044 +xref: NCIT:C33896 +xref: TAO:0001111 +xref: UMLS:C0043519 {source="ncithesaurus:Zona_Pellucida"} +xref: VHOG:0000720 +xref: ZFA:0001111 +xref: Zona:pellucida +is_a: UBERON:0000476 ! acellular anatomical structure +relationship: part_of UBERON:0000992 ! ovary + +[Term] +id: UBERON:0000087 +name: inner cell mass +def: "A mass of cells that develop into the body of the embryo and some extraembryonic tissues" [ISBN:0-683-40008-8, MGI:pvb] +subset: early_development +subset: efo_slim +subset: pheno_slim +synonym: "early embryoblast" RELATED [FMA:86557] +synonym: "embryoblast" RELATED [] +synonym: "embryoblastus; massa cellularis interna; pluriblastus senior" RELATED LATIN [http://en.wikipedia.org/wiki/Inner_cell_mass] +synonym: "ICM" RELATED [VHOG:0000742] +synonym: "pluriblast" RELATED [] +xref: EFO:0000547 +xref: EHDAA2:0000830 +xref: EHDAA:40 +xref: EMAPA:16041 +xref: FMA:86557 +xref: http://en.wikipedia.org/wiki/Inner_cell_mass +xref: http://linkedlifedata.com/resource/umls/id/C1283994 +xref: http://www.snomedbrowser.com/Codes/Details/361456007 +xref: NCIT:C13740 +xref: UMLS:C1283994 {source="ncithesaurus:Inner_Cell_Mass"} +xref: VHOG:0000742 +is_a: UBERON:0002050 ! embryonic structure +relationship: develops_from UBERON:0000358 {source="Wikipedia"} ! blastocyst +relationship: surrounded_by UBERON:0000088 {source="Wikipedia"} ! trophoblast + +[Term] +id: UBERON:0000088 +name: trophoblast +def: "the mesectodermal cell layer arising from the trophectoderm that erodes the uterine mucosa and contributes to the formation of the placenta" [ISBN:0-683-40008-8, MP:0005031] +comment: Aggregate of cells forming the outer layer of a blastocyst, which provide nutrients to the embryo and develop into a large part of the placenta. They are formed during the first stage of pregnancy and are the first cells to differentiate from the fertilized egg. [Wikipedia:Trophoblast] +subset: early_development +subset: pheno_slim +synonym: "massa cellularis externa" RELATED LATIN [http://en.wikipedia.org/wiki/Trophoblast] +synonym: "trophoblast layer" EXACT [MP:0005031] +synonym: "trophoblastus" RELATED LATIN [http://en.wikipedia.org/wiki/Trophoblast] +synonym: "trophoderm" RELATED [BTO:0001079] +xref: BTO:0001079 +xref: CALOHA:TS-1070 +xref: EV:0100120 +xref: FMA:83029 +xref: GAID:1152 +xref: http://en.wikipedia.org/wiki/Trophoblast +xref: http://linkedlifedata.com/resource/umls/id/C0041178 +xref: http://www.snomedbrowser.com/Codes/Details/362839005 +xref: MESH:A11.936 +xref: NCIT:C93292 +xref: UMLS:C0041178 {source="ncithesaurus:Trophoblast"} +is_a: UBERON:0002050 ! embryonic structure +relationship: develops_from UBERON:0004345 {source="http://www.ncbi.nlm.nih.gov/pubmed/19829370", source="MP-def"} ! trophectoderm +relationship: part_of UBERON:0000358 ! blastocyst + +[Term] +id: UBERON:0000089 +name: hypoblast (generic) +def: "." [GO:dph, http://en.wikipedia.org/wiki/Hypoblast, https://sourceforge.net/p/geneontology/ontology-requests/9676/, ZFIN:cvs] +subset: early_development +subset: efo_slim +subset: grouping_class +subset: uberon_slim +subset: vertebrate_core +synonym: "endomesoderm" RELATED [ISBN:0073040584, VHOG:0001222] +synonym: "future endoderm and mesoderm" RELATED [ISBN:0073040584] +synonym: "hypoblast" EXACT [VHOG:0001222] +synonym: "hypoblastus" RELATED LATIN [http://en.wikipedia.org/wiki/Hypoblast] +synonym: "mesendoderm" RELATED [ZFIN:ZDB-PUB-961014-576] +xref: AAO:0000229 +xref: AAO:0010619 +xref: BTO:0003953 +xref: EFO:0001930 +xref: EMAPA:32762 +xref: FMA:293873 +xref: http://en.wikipedia.org/wiki/Hypoblast +xref: http://linkedlifedata.com/resource/umls/id/C1512561 +xref: MAT:0000418 +xref: MIAA:0000418 +xref: NCIT:C34190 +xref: TAO:0000117 +xref: UMLS:C1512561 {source="ncithesaurus:Hypoblast"} +xref: VHOG:0001222 +xref: XAO:0003044 +xref: ZFA:0000117 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0004750 ! blastoderm + +[Term] +id: UBERON:0000090 +name: blastocele +def: "fluid-filled central region of a blastocyst." [http://en.wikipedia.org/wiki/Blastocele] +subset: early_development +subset: pheno_slim +synonym: "blastocelic cavity" RELATED [EMAPA:16044] +synonym: "blastocoel" RELATED [VHOG:0000811] +synonym: "blastocoele" EXACT [] +synonym: "blastocoelic cavity" EXACT [EHDAA2:0000175] +synonym: "blastocyst cavity" EXACT [] +synonym: "cleavage cavity" EXACT [] +synonym: "segmentation cavity" EXACT [] +xref: AAO:0010433 +xref: EHDAA2:0000175 +xref: EHDAA:50 +xref: EMAPA:16044 +xref: FMA:293131 +xref: http://en.wikipedia.org/wiki/Blastocele +xref: http://www.snomedbrowser.com/Codes/Details/361455006 +xref: VHOG:0000811 +xref: XAO:0000294 +is_a: UBERON:0002553 ! anatomical cavity +relationship: dubious_for_taxon NCBITaxon:7955 {source="http://zfin.org/zf_info/zfbook/stages/gast.html"} +relationship: surrounded_by UBERON:0002532 ! epiblast (generic) + +[Term] +id: UBERON:0000091 +name: bilaminar disc +def: "A flattened, almost circular bilaminar plate of cells formed when the inner cell mass (aka embryoblast) forms two epithelial layers, each of a distinct lineage, separated by an extracellular basement membrane: the external (dorsal) layer is called the epiblast and the internal (ventral) layer is called the hypoblast (aka primitive endoderm); together, they compose the bilaminar embryonic disc." [MP:0003886] +subset: early_development +subset: pheno_slim +synonym: "bilaminar disk" RELATED [http://en.wikipedia.org/wiki/Bilaminar_disc] +synonym: "bilaminary embryonic disc" EXACT [] +synonym: "bilaminary germ disc" EXACT [ISBN:9780878932504] +synonym: "embryonic disc" BROAD [MP:0003886] +synonym: "embryonic shield" BROAD [MP:0003886] +synonym: "germinal disc" BROAD [MP:0003886] +synonym: "germinal disk" BROAD [MP:0003886] +xref: Bilaminar:disc +xref: FMA:293863 +xref: http://linkedlifedata.com/resource/umls/id/C1283997 +xref: NCIT:C34112 +xref: UMLS:C1283997 {source="ncithesaurus:Bilaminar_Embryonic_Disc"} +is_a: UBERON:0002050 ! embryonic structure +relationship: develops_from UBERON:0000087 {source="Wikipedia"} ! inner cell mass + +[Term] +id: UBERON:0000092 +name: post-embryonic stage +def: "stage succeeding embryo, including mature structure" [https://orcid.org/0000-0002-6601-2165] +synonym: "post-hatching stage" NARROW [] +synonym: "postembryonic" RELATED [] +synonym: "postembryonic stage" EXACT [] +xref: BilaDO:0000003 +xref: OGES:000010 +xref: OGES:000014 +xref: OGES:000024 +xref: WBls:0000022 +xref: WBls:0000093 +xref: WBls:0000103 +is_a: UBERON:0000105 ! life cycle stage +relationship: preceded_by UBERON:0000068 ! embryo stage + +[Term] +id: UBERON:0000093 +name: sulcus +def: "A depression or fissure in the surface of an organ." [http://en.wikipedia.org/wiki/Sulcus_(anatomy)] +subset: grouping_class +subset: non_informative +xref: Sulcus:(anatomy) +is_a: UBERON:0000464 ! anatomical space +created_by: cjm +creation_date: 2009-04-09T06:23:22Z + +[Term] +id: UBERON:0000094 +name: membrane organ +def: "Nonparenchymatous organ that primarily consists of dense connective tissue organized into a sheet which interconnects two or more organs, separates two or more body spaces from one another, or surrounds an organ or body part. Examples: interosseous membrane of forearm, obturator membrane, tympanic membrane, fibrous pericardium, fascia lata, dura mater. [FMA]" [FMA:7145] +synonym: "membrane" BROAD [] +synonym: "membrane of organ" EXACT [] +xref: FMA:7145 +is_a: UBERON:0000062 ! organ +relationship: composed_primarily_of UBERON:0011823 {source="FMA-def"} ! dense connective tissue +created_by: cjm +creation_date: 2009-07-30T05:19:13Z + +[Term] +id: UBERON:0000095 +name: cardiac neural crest +def: "portion of neural crest that develops from the dorsal neural tube. It overlaps the vagal neural crest and migrates to populate the pharyngeal arches 3, 4 and 6 (producing structures in the head) and to the heart, forming connective tissue that separates the great vessels of the heart. [Wikipedia]" [http://en.wikipedia.org/wiki/Cardiac_neural_crest] +subset: vertebrate_core +synonym: "cardiac neural crest complex" RELATED [http://en.wikipedia.org/wiki/Cardiac_neural_crest] +synonym: "complexus cristae neuralis cardiacus" RELATED [http://en.wikipedia.org/wiki/Cardiac_neural_crest] +xref: http://en.wikipedia.org/wiki/Cardiac_neural_crest +xref: TAO:0002173 +xref: XAO:0004190 +xref: ZFA:0001648 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0002342 ! neural crest +created_by: cjm +creation_date: 2009-07-30T07:57:38Z + +[Term] +id: UBERON:0000100 +name: blastopore +def: "the orifice of invagination of the endomesodermal cells during the embryonic stages of an organism." [BGEE:ANN, http://www.ncbi.nlm.nih.gov/pubmed/23103190, https://github.com/obophenotype/uberon/issues/660] +subset: early_development +subset: metazoa_core +xref: AAO:0000045 +xref: BTO:0001695 +xref: http://en.wikipedia.org/wiki/Blastopore +xref: XAO:0000208 +is_a: UBERON:0002050 ! embryonic structure +property_value: dc-contributor https://github.com/ANiknejad +property_value: dc-contributor https://github.com/cmungall +relationship: dubious_for_taxon NCBITaxon:7955 {source="http://zfin.org/zf_info/zfbook/stages/gast.html"} +relationship: part_of UBERON:0004735 {source="BGEE:ANN"} ! archenteron + +[Term] +id: UBERON:0000101 +name: lobe of lung +def: "A lung lobe is one of the rounded projections that compose the lung[GO]." [GOC:GO] +subset: pheno_slim +synonym: "lung lobe" EXACT [] +synonym: "pulminory lobe" EXACT [] +synonym: "pulmonary lobe" EXACT [FMA:7311] +xref: EMAPA:36281 +xref: FMA:7311 +xref: galen:LobeOfLung +xref: http://linkedlifedata.com/resource/umls/id/C0225752 +xref: http://www.snomedbrowser.com/Codes/Details/245524004 +xref: MA:0003098 +xref: NCIT:C34021 +xref: OpenCyc:Mx4rvo6-vpwpEbGdrcN5Y29ycA +xref: UMLS:C0225752 {source="ncithesaurus:Lung_Lobe"} +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0009912 {source="FMA"} ! anatomical lobe +relationship: contributes_to_morphology_of UBERON:0002048 ! lung +relationship: part_of UBERON:0002048 ! lung + +[Term] +id: UBERON:0000102 +name: lung vasculature +def: "The lung vasculature is composed of the tubule structures that carry blood or lymph in the lungs[GO]." [GOC:GO] +subset: pheno_slim +synonym: "lung vascular network" EXACT [OBOL:automatic] +synonym: "pulmonary vasculature" EXACT [FMA:73750] +synonym: "vascular network of lung" EXACT [OBOL:automatic] +synonym: "vasculature of lung" EXACT [OBOL:automatic] +xref: FMA:73750 +is_a: UBERON:0002201 ! vasculature of trunk +is_a: UBERON:0006876 ! vasculature of organ +intersection_of: UBERON:0002049 ! vasculature +intersection_of: part_of UBERON:0002048 ! lung +relationship: part_of UBERON:0002048 ! lung + +[Term] +id: UBERON:0000103 +name: obsolete life cycle stage boundary +def: "Instant starting or ending a life cycle stage. These can be arbitrary/fiat." [https://orcid.org/0000-0002-6601-2165] +synonym: "life cycle stage transition event" EXACT [] +synonym: "life cycle stage transition instant" EXACT [] +xref: span:ProcessBoundary +is_obsolete: true + +[Term] +id: UBERON:0000104 +name: life cycle +def: "An entire span of an organism's life, commencing with the zygote stage and ending in the death of the organism." [https://orcid.org/0000-0002-6601-2165] +subset: upper_level +synonym: "entire life cycle" EXACT [] +synonym: "entire lifespan" EXACT [] +synonym: "life" EXACT [] +synonym: "lifespan" EXACT [] +xref: FBdv:00000000 +xref: HsapDv:0000001 +xref: MmusDv:0000001 +xref: ncithesaurus:Life +xref: OGES:000011 +is_a: UBERON:0000000 ! processual entity +relationship: ends_with UBERON:0000071 ! death stage +relationship: has_part UBERON:0000105 ! life cycle stage +relationship: starts_with UBERON:0000106 ! zygote stage + +[Term] +id: UBERON:0000105 +name: life cycle stage +def: "A spatiotemporal region encompassing some part of the life cycle of an organism." [https://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: upper_level +synonym: "developmental stage" NARROW [] +synonym: "stage" NARROW [] +xref: BILS:0000105 +xref: EFO:0000399 +xref: FBdv:00007012 +xref: FMA:24120 +xref: HsapDv:0000000 +xref: MmusDv:0000000 +xref: ncithesaurus:Developmental_Stage +xref: OlatDv:0000010 +xref: PdumDv:0000090 +xref: WBls:0000002 +xref: XAO:1000000 +xref: ZFS:0000000 +xref: ZFS:0100000 +is_a: UBERON:0000000 ! processual entity +relationship: part_of UBERON:0000104 ! life cycle + +[Term] +id: UBERON:0000106 +name: zygote stage +def: "A stage at which the organism is a single cell produced by means of sexual reproduction." [http://en.wikipedia.org/wiki/Zygote] +subset: efo_slim +synonym: "1-cell stage" EXACT [] +synonym: "fertilized egg stage" EXACT [BTO:0000854] +synonym: "fertilized egg stage" RELATED [] +synonym: "one cell stage" EXACT [] +synonym: "one-cell stage" RELATED [VHOG:0000745] +synonym: "zygote" RELATED [VHOG:0000745] +synonym: "zygotum" RELATED LATIN [http://en.wikipedia.org/wiki/Zygote] +xref: BilaDO:0000005 +xref: BILS:0000106 +xref: EFO:0001322 +xref: EHDAA:27 +xref: FBdv:00005288 +xref: http://en.wikipedia.org/wiki/Zygote +xref: NCIT:C12601 +xref: PdumDv:0000100 +xref: VHOG:0000745 +xref: XAO:1000001 +xref: ZFS:0000001 +is_a: UBERON:0000105 ! life cycle stage +relationship: part_of UBERON:0000068 ! embryo stage +relationship: seeAlso EMAPA:16033 +relationship: starts UBERON:0000104 ! life cycle + +[Term] +id: UBERON:0000107 +name: cleavage stage +def: "The first few specialized divisions of an activated animal egg; Stage consisting of division of cells in the early embryo. The zygotes of many species undergo rapid cell cycles with no significant growth, producing a cluster of cells the same size as the original zygote. The different cells derived from cleavage are called blastomeres and form a compact mass called the morula. Cleavage ends with the formation of the blastula." [GO:0040016, http://en.wikipedia.org/wiki/Cleavage_(embryo)] +subset: efo_slim +xref: BilaDO:0000006 +xref: BILS:0000107 +xref: Cleavage:(embryo) +xref: EFO:0001290 +xref: FBdv:00000054 +xref: MESH:A16.254.270 +xref: MmusDv:0000004 +xref: OGES:000015 +xref: OGES:000020 +xref: PdumDv:0000200 +xref: XAO:1000004 +xref: ZFS:0000046 +is_a: UBERON:0000105 ! life cycle stage +relationship: immediately_preceded_by UBERON:0000106 ! zygote stage +relationship: part_of UBERON:0000068 ! embryo stage + +[Term] +id: UBERON:0000108 +name: blastula stage +def: "An early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence." [http://en.wikipedia.org/wiki/Blastula] +subset: efo_slim +xref: BilaDO:0000007 +xref: BILS:0000108 +xref: EFO:0001282 +xref: HsapDv:0000006 +xref: http://en.wikipedia.org/wiki/Blastula +xref: MmusDv:0000007 +xref: OGES:000003 +xref: OGES:000016 +xref: OGES:000021 +xref: OpenCyc:Mx4rEetFnKP2EdqAAAACs4vPlg +xref: WBls:0000005 +xref: XAO:1000003 +xref: ZFS:0000045 +is_a: UBERON:0000105 ! life cycle stage +relationship: part_of UBERON:0000068 ! embryo stage +relationship: preceded_by UBERON:0000107 ! cleavage stage + +[Term] +id: UBERON:0000109 +name: gastrula stage +def: "A stage defined by complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm." [GO:0007369] +subset: efo_slim +synonym: "blastocystis trilaminaris stage" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "trilaminar blastocyst stage" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "trilaminar blastoderm stage" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "trilaminar disk stage" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "trilaminar germ stage" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "trilaminar stage" RELATED [https://orcid.org/0000-0002-6601-2165] +xref: BilaDO:0000008 +xref: BILS:0000109 +xref: EFO:0001296 +xref: FBdv:00005317 +xref: HsapDv:0000010 +xref: MmusDv:0000013 +xref: OGES:000004 +xref: OGES:000019 +xref: WBls:0000010 +xref: XAO:1000005 +xref: ZFS:0000047 +is_a: UBERON:0000105 ! life cycle stage +relationship: part_of UBERON:0000068 ! embryo stage +relationship: preceded_by UBERON:0000108 {source="BILS"} ! blastula stage + +[Term] +id: UBERON:0000110 +name: neurula stage +def: "Staged defined by the formation of a tube from the flat layer of ectodermal cells known as the neural plate. This will give rise to the central nervous system." [GO:0001841] +xref: BilaDO:0000009 +xref: BILS:0000110 +xref: HsapDv:0000012 +xref: MmusDv:0000017 +xref: XAO:1000006 +is_a: UBERON:0000105 ! life cycle stage +relationship: part_of UBERON:0000068 ! embryo stage +relationship: preceded_by UBERON:0000109 ! gastrula stage + +[Term] +id: UBERON:0000111 +name: organogenesis stage +def: "A stage at which the ectoderm, endoderm, and mesoderm develop into the internal organs of the organism." [http://en.wikipedia.org/wiki/Organogenesis] +synonym: "segmentation stage" RELATED [] +xref: BilaDO:0000010 +xref: BILS:0000111 +xref: HsapDv:0000015 +xref: http://en.wikipedia.org/wiki/Organogenesis +xref: MmusDv:0000018 +xref: OGES:000005 +xref: OGES:000032 +is_a: UBERON:0000105 ! life cycle stage +relationship: part_of UBERON:0000068 ! embryo stage +relationship: preceded_by UBERON:0000110 ! neurula stage + +[Term] +id: UBERON:0000112 +name: sexually immature stage +subset: efo_slim +synonym: "immature stage" EXACT [VHOG:FB] +synonym: "juvenile stage" NARROW [XAO:1000010] +synonym: "subadult stage" RELATED [http://eol.org/schema/terms/subadult] +xref: BILS:0000112 +xref: BTO:0002168 +xref: EFO:0001300 +xref: EV:0300051 +xref: MmusDv:0000043 +xref: OGES:000009 +xref: XAO:1000010 +xref: XtroDO:0000083 +xref: ZFS:0000051 +is_a: UBERON:0000105 ! life cycle stage +relationship: part_of UBERON:0000066 ! fully formed stage + +[Term] +id: UBERON:0000113 +name: post-juvenile adult stage +def: "The stage of being a sexually mature adult animal." [https://orcid.org/0000-0002-6601-2165] +synonym: "adult stage" BROAD [] +xref: BILS:0000113 +xref: EV:0300064 +xref: EV:0300070 +xref: MIAA:0000403 +xref: MmusDv:0000110 +xref: OGES:000026 +xref: OGES:000027 +xref: XAO:1000093 +xref: ZFS:0000044 +is_a: UBERON:0000105 ! life cycle stage +relationship: part_of UBERON:0000066 ! fully formed stage +relationship: preceded_by UBERON:0000112 ! sexually immature stage + +[Term] +id: UBERON:0000114 +name: lung connective tissue +def: "the connective tissue located between the respiratory (airway and alveolar) epithelium, the capillary endothelium and pleural mesothelium; it contains basement membrane composed of collagen, elastin, proteoglycans, and fibronectin" [http://www.ncbi.nlm.nih.gov/pubmed/14635660, ISBN:0-683-40008-8, MGI:anna, MP:0002276] +subset: pheno_slim +synonym: "connective tissue of lung" EXACT [OBOL:automatic] +synonym: "lung interstitial tissue" RELATED [MA:0001782] +synonym: "lung interstitium" RELATED [] +synonym: "pulmonary connective tissue" RELATED [EMAPA:35521] +synonym: "pulmonary interstitial tissue" RELATED [] +synonym: "pulmonary interstitium" EXACT [FMA:27533] +xref: EMAPA:35521 +xref: FMA:27533 +xref: http://www.snomedbrowser.com/Codes/Details/201609008 +xref: MA:0001782 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0003580 ! lower respiratory tract connective tissue +is_a: UBERON:0003837 ! thoracic segment connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0002048 ! lung +relationship: contributes_to_morphology_of UBERON:0002048 ! lung +relationship: develops_from UBERON:0004883 ! lung mesenchyme +relationship: part_of UBERON:0002048 ! lung +relationship: transformation_of UBERON:0004883 ! lung mesenchyme + +[Term] +id: UBERON:0000115 +name: lung epithelium +def: "The epithelial layer of the lung." [MP:0006382] +subset: pheno_slim +synonym: "epithelial tissue of lung" EXACT [OBOL:automatic] +synonym: "epithelium of lung" EXACT [OBOL:automatic] +synonym: "lung epithelial tissue" EXACT [OBOL:automatic] +synonym: "pulmonary epithelium" RELATED [BTO:0001653] +xref: BTO:0001653 +xref: EMAPA:32860 +xref: MA:0001783 +is_a: UBERON:0004815 ! lower respiratory tract epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002048 ! lung +relationship: contributes_to_morphology_of UBERON:0002048 ! lung +relationship: develops_from UBERON:0001041 ! foregut +relationship: part_of UBERON:0002048 ! lung + +[Term] +id: UBERON:0000116 +name: lung saccule +def: "Primitive gas exchange portion of the lung composed of type I and type II cells[GO]." [GO:0060430] +subset: pheno_slim +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: part_of UBERON:0002299 {source="GO"} ! alveolus of lung + +[Term] +id: UBERON:0000117 +name: respiratory tube +def: "A tube in the respiratory system. Examples: bronchus, bronchiole, trachea." [GO:0030323, http://orcid.org/0000-0002-6601-2165] +synonym: "airway" RELATED [] +synonym: "respiratory conducting tube" NARROW [MP:0004391] +synonym: "segment of tracheobronchial tree" EXACT [FMA:12224] +synonym: "segment of tracheobronchial tree" NARROW [FMA:12224] +synonym: "tracheobronchial tree segment" NARROW [FMA:12224] +xref: EMAPA:37946 {source="MA:th"} +xref: FMA:12224 +is_a: UBERON:0000025 ! tube +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000025 ! tube +intersection_of: part_of UBERON:0000065 ! respiratory tract +relationship: has_part UBERON:0000483 ! epithelium +relationship: part_of UBERON:0000065 ! respiratory tract + +[Term] +id: UBERON:0000118 +name: lung bud +def: "Structure derived from foregut that becomes a lung[GO]." [GO:0060431, http://en.wikipedia.org/wiki/Respiratory_bud] +subset: pheno_slim +synonym: "gemma pulmonalis" RELATED LATIN [http://en.wikipedia.org/wiki/Lung_buds] +synonym: "gemma respiratoria" RELATED LATIN [http://en.wikipedia.org/wiki/Lung_buds] +synonym: "lung bud" RELATED PLURAL [] +synonym: "primary lung bud" RELATED [GO:0060572] +synonym: "respiratory diverticulum" RELATED [http://en.wikipedia.org/wiki/Lung_buds] +xref: BTO:0001643 +xref: EHDAA2:0004089 +xref: http://linkedlifedata.com/resource/umls/id/C1514420 +xref: http://linkedlifedata.com/resource/umls/id/C1514897 +xref: http://www.snomedbrowser.com/Codes/Details/361427007 +xref: NCIT:C34260 +xref: NCIT:C34282 +xref: Respiratory:bud +xref: UMLS:C1514420 {source="ncithesaurus:Primary_Bronchial_Bud"} +xref: UMLS:C1514897 {source="ncithesaurus:Respiratory_Diverticulum"} +is_a: UBERON:0005153 {source="GO:0060441"} ! epithelial bud +is_a: UBERON:0005911 ! endo-epithelium +relationship: adjacent_to UBERON:0004872 ! splanchnic layer of lateral plate mesoderm +relationship: develops_from UBERON:0005597 ! lung primordium +relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primordium + +[Term] +id: UBERON:0000119 +name: cell layer +def: "Portion of tissue, that consists of single layer of cells connected to each other by cell junctions. Examples: layer of glial cells; epithelium." [https://orcid.org/0000-0002-6601-2165] +subset: upper_level +synonym: "cell sheath" RELATED [] +synonym: "layer" BROAD [NCIT:C66831] +synonym: "layer of cells" EXACT [] +synonym: "sheath of cells" RELATED [] +xref: NCIT:C66831 +is_a: UBERON:0000957 ! lamina + +[Term] +id: UBERON:0000120 +name: blood brain barrier +def: "Cell layer consisting of lining cells that separates the central nervous system and the bloodstream. The BBB may consist of endothelial cells or glial cells. An endothelial barrier may have arisen independently several times during evolution. In bichir and lungfish the barrier is formed by brain endothelial cells, while in sturgeon it is formed by a complex perivascular glial sheath, but with no detectable tight junctions." [http://en.wikipedia.org/wiki/Blood-brain_barrier, https://doi.org/10.1002/glia.20642] +synonym: "BBB" RELATED [] +synonym: "blood-brain barrier" EXACT [] +xref: Blood-brain:barrier +xref: http://linkedlifedata.com/resource/umls/id/C0005854 +xref: NCIT:C13194 +xref: nlx_subcell:100205 +xref: UMLS:C0005854 {source="ncithesaurus:Blood-Brain_Barrier"} +is_a: UBERON:0000119 ! cell layer +relationship: adjacent_to UBERON:0000179 ! haemolymphatic fluid +relationship: adjacent_to UBERON:0000955 ! brain +relationship: part_of UBERON:0001016 ! nervous system + +[Term] +id: UBERON:0000121 +name: perineurium +def: "A layer of thin, concentrically arranged cells with interspersed collagen that lies within the epineurium. (Nolte, J., The Human Brain 3rd edition)" [NLXANAT:090205] +xref: BTO:0003153 +xref: EMAPA:37849 {source="MA:th"} +xref: FMA:52585 +xref: http://en.wikipedia.org/wiki/Perineurium +xref: http://linkedlifedata.com/resource/umls/id/C0205890 +xref: http://www.snomedbrowser.com/Codes/Details/362299001 +xref: NCIT:C33302 +xref: NCIT:C41407 +xref: NLXANAT:090205 +xref: UMLS:C0205890 {source="ncithesaurus:Perineurium"} +is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue +relationship: bounding_layer_of UBERON:0001019 ! nerve fasciculus +relationship: located_in UBERON:0000124 ! epineurium +relationship: part_of UBERON:0001019 ! nerve fasciculus + +[Term] +id: UBERON:0000122 +name: neuron projection bundle +alt_id: UBERON:0005163 +def: "A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses." [CARO:0001001, FBbt:00005099, FBC:DOS] +synonym: "funiculus" EXACT [] +synonym: "nerve fiber bundle" EXACT [FBbt:00005099] +synonym: "neural fiber bundle" EXACT [] +xref: CARO:0001001 +xref: FBbt:00005099 +xref: NLX:147821 +is_a: UBERON:0005162 ! multi cell part structure +relationship: part_of UBERON:0001016 ! nervous system + +[Term] +id: UBERON:0000123 +name: endoneurium +def: "The loose connective tissue within the perineurium that continues into nerve fascicles and surrounds individual fibers. (Nolte, J. The Human Brain 3rd edition)" [NLXANAT:090202] +xref: EMAPA:37847 {source="MA:th"} +xref: FMA:52586 +xref: http://en.wikipedia.org/wiki/Endodeurium +xref: http://linkedlifedata.com/resource/umls/id/C0205888 +xref: http://www.snomedbrowser.com/Codes/Details/15931004 +xref: NCIT:C32518 +xref: NLXANAT:090202 +xref: UMLS:C0205888 {source="ncithesaurus:Endoneurium"} +is_a: UBERON:0006804 {source="FMA"} ! reticular tissue +relationship: bounding_layer_of UBERON:0006134 ! nerve fiber +relationship: located_in UBERON:0000121 ! perineurium +relationship: part_of UBERON:0000010 ! peripheral nervous system +relationship: part_of UBERON:0006134 ! nerve fiber + +[Term] +id: UBERON:0000124 +name: epineurium +def: "A loose connective tissue sheath surrounding each peripheral nerve. Composed mainly of colagen and fibroblasts, it forms a substantial covering over nerve trunks, then thins to an incomplete layer around smaller branches near their terminations. The epineurium is continuous centrally with the dura. Peripherally, it usually ends near the termination of a nerve fiber, but it may continue as the capsule of Meissner corpuscles and a few other encapsulated endings. Nolte, J. The Human Brain 3rd edition" [NLXANAT:090203] +xref: BTO:0003154 +xref: EMAPA:37848 {source="MA:th"} +xref: FMA:12234 +xref: http://en.wikipedia.org/wiki/Epineurium +xref: http://linkedlifedata.com/resource/umls/id/C0205889 +xref: http://www.snomedbrowser.com/Codes/Details/64482002 +xref: NCIT:C32528 +xref: NLXANAT:090203 +xref: UMLS:C0205889 {source="ncithesaurus:Epineurium"} +is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue +relationship: part_of UBERON:0000010 ! peripheral nervous system +relationship: surrounds UBERON:0001021 ! nerve + +[Term] +id: UBERON:0000125 +name: neural nucleus +def: "A spatially aggregated collection of nerve cell bodies in the CNS, consisting of one or more subpopulations that share cell type, chemical phenotype, and connections, and including nearby cells that share the same cell type, chemical phenotype, and connections. (CUMBO)" [NLX:28443] +subset: cumbo +synonym: "nervous system nucleus" EXACT [] +synonym: "neuraxis nucleus" EXACT [FMA:83686] +synonym: "neuronal nucleus" EXACT [AEO:0000136] +synonym: "nucleus" BROAD [] +synonym: "nucleus of CNS" EXACT [NLX:28443] +synonym: "nucleus of neuraxis" RELATED [] +xref: AEO:0000136 +xref: FMA:83686 +xref: NCIT:C13197 +xref: NLX:28443 +xref: Nucleus:(neuroanatomy) +is_a: UBERON:0011215 ! central nervous system cell part cluster +relationship: composed_primarily_of UBERON:0002020 ! gray matter + +[Term] +id: UBERON:0000126 +name: cranial nerve nucleus +def: "Nucleus that receives projections from or contains neurons that send projections through one of the cranial nerves" [NLX:28532] +synonym: "cranial neural nucleus" EXACT [FMA:54501] +synonym: "nucleus nervi cranialis" RELATED LATIN [http://en.wikipedia.org/wiki/Cranial_nerve_nucleus] +synonym: "nucleus of cranial nerve" EXACT [] +xref: EMAPA:37066 {source="MA:th"} +xref: FMA:54501 +xref: http://en.wikipedia.org/wiki/Cranial_nerve_nucleus +xref: http://www.snomedbrowser.com/Codes/Details/280160003 +xref: NLX:28532 +is_a: UBERON:0002308 ! nucleus of brain +intersection_of: UBERON:0002308 ! nucleus of brain +intersection_of: extends_fibers_into UBERON:0001785 ! cranial nerve +relationship: extends_fibers_into UBERON:0001785 ! cranial nerve + +[Term] +id: UBERON:0000127 +name: facial nucleus +def: "the group of motor neurons residing in the pons that innervate the muscles of facial expression" [ISBN:0838580343, MP:0000909] +subset: pheno_slim +synonym: "facial nerve nucleus" EXACT [] +synonym: "facial VII motor nucleus" RELATED [MA:0001014] +synonym: "facial VII nucleus" EXACT [MA:0001014] +synonym: "nucleus of facial nerve" EXACT [FMA:54572] +xref: BAMS:7 +xref: BAMS:7N +xref: BAMS:VII +xref: BM:Pons-VII +xref: DHBA:12420 +xref: EHDAA2:0004638 +xref: EMAPA:35338 +xref: EV:0100267 +xref: FMA:54572 +xref: http://linkedlifedata.com/resource/umls/id/C0228740 +xref: http://www.snomedbrowser.com/Codes/Details/280166009 +xref: MA:0001014 +xref: NCIT:C12898 +xref: UMLS:C0228740 {source="ncithesaurus:Facial_Nerve_Nucleus"} +xref: VHOG:0001412 +is_a: UBERON:0000126 ! cranial nerve nucleus +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009662 ! hindbrain nucleus +intersection_of: UBERON:0000126 ! cranial nerve nucleus +intersection_of: extends_fibers_into UBERON:0001647 ! facial nerve +relationship: contributes_to_morphology_of UBERON:0000988 ! pons +relationship: develops_from UBERON:0010123 ! future facial nucleus +relationship: extends_fibers_into UBERON:0001647 ! facial nerve +relationship: immediate_transformation_of UBERON:0010123 {evidence="definitional"} ! future facial nucleus +relationship: part_of UBERON:0000988 ! pons + +[Term] +id: UBERON:0000128 +name: olivary body +def: "prominent oval structure in the medulla oblongata, present in pairs, the lower portion of the brainstem. They contain the olivary nuclei" [http://en.wikipedia.org/wiki/Olivary_body] +subset: pheno_slim +synonym: "oliva" RELATED LATIN [http://en.wikipedia.org/wiki/Olivary_body] +synonym: "olivary nucleus" RELATED [BTO:0002299] +synonym: "olive" RELATED [] +synonym: "olive body" EXACT [] +xref: BTO:0002299 +xref: http://www.snomedbrowser.com/Codes/Details/279293003 +xref: Olivary:body +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010000 ! multicellular anatomical structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001896 ! medulla oblongata + +[Term] +id: UBERON:0000130 +name: transverse foramen +def: "Foramen that pierces the transverse processes of the seven cervical vertebrae. In the upper six vertebrae, the foramen gives passage to the vertebral artery, vertebral vein, and a plexus of sympathetic nerves. The seventh foramen lacks the artery, but contains the vein and sympathetic nerves." [http://en.wikipedia.org/wiki/Transverse_foramen] +synonym: "foramen transversarium" EXACT [http://en.wikipedia.org/wiki/Transverse_foramen] +synonym: "foramen transversarium" RELATED LATIN [http://en.wikipedia.org/wiki/Transverse_foramen] +synonym: "foramen transversarium of cervical vertebra" EXACT [FMA:23998] +synonym: "foramen transversarium vertebrae cervicales" EXACT LATIN [FMA:23997, FMA:TA] +synonym: "transverse foramen of cervical vertebra" EXACT [FMA:23997] +xref: EMAPA:36272 +xref: FMA:23997 +xref: http://www.snomedbrowser.com/Codes/Details/280735005 +xref: Transverse:foramen +is_a: UBERON:0005744 ! bone foramen +relationship: conduit_for UBERON:0001588 ! vertebral vein +relationship: conduit_for UBERON:0012373 ! sympathetic nerve plexus +relationship: part_of UBERON:0001077 ! transverse process of vertebra +relationship: part_of UBERON:0002413 ! cervical vertebra + +[Term] +id: UBERON:0000144 +name: trochlea of humerus +def: "The medial portion of the articular surface of the humerus is named the trochlea, and presents a deep depression between two well-marked borders; it is convex from before backward, concave from side to side, and occupies the anterior, lower, and posterior parts of the extremity. It is directly inferior to the most prominent anterior humeral fossia, the Coronoid fossia. It articulates with the ulna." [http://en.wikipedia.org/wiki/Trochlea_of_humerus] +synonym: "humeral trochlea" EXACT [FMA:23370] +synonym: "trochlea humeri" EXACT [http://en.wikipedia.org/wiki/Trochlea_of_humerus] +xref: FMA:23370 +xref: http://en.wikipedia.org/wiki/Trochlea_of_humerus +xref: http://www.snomedbrowser.com/Codes/Details/282817004 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +relationship: part_of UBERON:0004404 ! distal epiphysis of humerus + +[Term] +id: UBERON:0000151 +name: pectoral fin +def: "Paired fin that is located in the thoracic region of the body." [TAO:curator, VSAO:0000147] +synonym: "forefin" EXACT [VSAO:0000147] +synonym: "nageoire pectorale@fr" EXACT [VSAO:0000147] +synonym: "omoptérygie@fr" EXACT [VSAO:0000147] +synonym: "pectoral fins" RELATED PLURAL [ZFA:0001161] +synonym: "thoracoptérygie@fr" EXACT [VSAO:0000147] +xref: BTO:0004653 +xref: Fins +xref: http://www.snomedbrowser.com/Codes/Details/416982006 +xref: TAO:0001161 +xref: VSAO:0000147 +xref: ZFA:0001161 +is_a: UBERON:0002534 ! paired fin +is_a: UBERON:0004710 {is_entailed="true"} ! pectoral appendage +intersection_of: UBERON:0002534 ! paired fin +intersection_of: part_of UBERON:0010708 ! pectoral complex +relationship: has_skeleton UBERON:0010710 ! pectoral fin skeleton + +[Term] +id: UBERON:0000152 +name: pelvic fin +def: "Paired fin located in the abdominal position of the body." [TAO:curator, VSAO:0000129] +subset: efo_slim +synonym: "ischioptérygie@fr" EXACT [VSAO:0000129] +synonym: "nageoire pelvienne@fr" EXACT [VSAO:0000129] +synonym: "pelvic fins" RELATED PLURAL [ZFA:0001184] +xref: BTO:0004651 +xref: EFO:0003644 +xref: Fins +xref: TAO:0001184 +xref: VSAO:0000129 +xref: ZFA:0001184 +is_a: UBERON:0002534 ! paired fin +is_a: UBERON:0004709 {is_entailed="true"} ! pelvic appendage +intersection_of: UBERON:0002534 ! paired fin +intersection_of: part_of UBERON:0010709 ! pelvic complex +relationship: has_skeleton UBERON:0010711 ! pelvic fin skeleton + +[Term] +id: UBERON:0000153 +name: anterior region of body +is_a: UBERON:0000475 ! organism subdivision +disjoint_from: UBERON:0000154 {source="lexical"} ! posterior region of body +relationship: anterior_to UBERON:0000154 ! posterior region of body + +[Term] +id: UBERON:0000154 +name: posterior region of body +is_a: UBERON:0000475 ! organism subdivision + +[Term] +id: UBERON:0000155 +name: theca cell layer +def: "A layer of the ovarian follicle that consists of theca cells." [http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: vertebrate_core +synonym: "layer of theca cells" EXACT [] +synonym: "ovarian theca" RELATED [EMAPA:35636] +synonym: "ovary theca" EXACT [MA:0001712] +synonym: "theca cell layer of ovarian follicle" EXACT [] +synonym: "theca folliculi" RELATED LATIN [http://en.wikipedia.org/wiki/Theca_of_follicle] +synonym: "theca folliculi" RELATED LATIN [] +synonym: "theca of follicle" EXACT [] +synonym: "thecal cell layer" EXACT [ZFA:0001113] +synonym: "thecal cell layers" RELATED PLURAL [ZFA:0001113] +xref: BTO:0002853 +xref: EFO:0003629 +xref: EMAPA:35636 +xref: FMA:18656 +xref: http://en.wikipedia.org/wiki/Theca_of_follicle +xref: http://www.snomedbrowser.com/Codes/Details/361385000 +xref: MA:0001712 +xref: TAO:0001113 +xref: ZFA:0001113 +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0001305 ! ovarian follicle + +[Term] +id: UBERON:0000156 +name: theca externa +alt_id: UBERON:0005182 +def: "The theca externa is the outer layers of the theca folliculi. It contains abundant collagen and is mainly supportive." [http://en.wikipedia.org/wiki/Theca_externa] +subset: pheno_slim +synonym: "external coat of theca folliculi" RELATED [BTO:0002852] +synonym: "ovary theca externa" EXACT [MA:0001713] +synonym: "theca externa (folliculus ovaricus tertiarius)" EXACT [FMA:18657] +synonym: "tunica externa of theca folliculi" EXACT [FMA:18657] +synonym: "tunica externa thecae folliculi" RELATED LATIN [http://en.wikipedia.org/wiki/Theca_externa] +synonym: "tunica externa thecae folliculi" RELATED [BTO:0002852] +xref: BTO:0002852 +xref: FMA:18657 +xref: http://www.snomedbrowser.com/Codes/Details/258767003 +xref: MA:0001713 +xref: Theca:externa +is_a: UBERON:0000158 ! membranous layer +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: bounding_layer_of UBERON:0000155 ! theca cell layer +relationship: part_of UBERON:0000155 ! theca cell layer +relationship: surrounds UBERON:0000157 ! theca interna + +[Term] +id: UBERON:0000157 +name: theca interna +alt_id: UBERON:0005183 +def: "Theca interna cells express receptors for luteinizing hormone, which when activated will stimulate the production of androstenedione from cholesterol by the enzyme desmolase. Androstenedione ultimately gives the granulosa cells the precursor substrate for estrogen manufacturing." [http://en.wikipedia.org/wiki/Theca_externa#Theca_interna] +subset: pheno_slim +synonym: "internal coat of capsule of Graafian follicle" RELATED [BTO:0002851] +synonym: "ovary theca interna" EXACT [MA:0001714] +synonym: "theca interna (folliculus ovaricus tertiarius)" EXACT [FMA:18658] +synonym: "tunica interna of theca folliculi" EXACT [FMA:18658] +synonym: "tunica interna thecae folliculi" RELATED [BTO:0002851] +xref: BTO:0002851 +xref: FMA:18658 +xref: http://www.snomedbrowser.com/Codes/Details/258869006 +xref: MA:0001714 +xref: Theca_interna +is_a: UBERON:0000158 ! membranous layer +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: contributes_to_morphology_of UBERON:0000155 ! theca cell layer +relationship: part_of UBERON:0000155 ! theca cell layer + +[Term] +id: UBERON:0000158 +name: membranous layer +synonym: "membrane" BROAD [] +synonym: "membranous organ component" EXACT [FMA:82500] +xref: FMA:30322 +xref: FMA:82500 +xref: MESH:D008566 +xref: NCIT:C12749 +is_a: UBERON:0004923 ! organ component layer +relationship: bounding_layer_of UBERON:0000064 ! organ part + +[Term] +id: UBERON:0000159 +name: anal canal +def: "The terminal part of the large intestine, continuous proximally with the rectum and distally terminates with the anus." [http://en.wikipedia.org/wiki/Anal_canal] +subset: pheno_slim +subset: uberon_slim +synonym: "anal canal" EXACT [] +synonym: "anal canal viewed anatomically" EXACT [] +synonym: "anal pad" RELATED [] +synonym: "anatomical anal canal" EXACT [] +synonym: "anus" RELATED [] +synonym: "canalis analis" RELATED LATIN [http://en.wikipedia.org/wiki/Anal_canal] +synonym: "canalis analis" RELATED [BTO:0001978] +synonym: "cloaca" RELATED [] +synonym: "cloacal chamber" RELATED [] +synonym: "mesenteron" RELATED [] +synonym: "pars analis recti" RELATED [BTO:0001978] +xref: Anal:canal +xref: BTO:0001978 +xref: CALOHA:TS-2160 +xref: EMAPA:18256 +xref: FMA:15703 +xref: galen:AnalCanal +xref: http://linkedlifedata.com/resource/umls/id/C0227411 +xref: http://www.snomedbrowser.com/Codes/Details/245438008 +xref: MA:0000330 +xref: NCIT:C12375 +xref: UMLS:C0227411 {source="ncithesaurus:Anal_Canal"} +is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: channel_for UBERON:0001988 ! feces +relationship: continuous_with UBERON:0001052 ! rectum +relationship: continuous_with UBERON:0001245 ! anus +relationship: develops_from UBERON:0011272 {source="Wikipathways:WP2062"} ! embryonic skin basal layer +relationship: part_of UBERON:0000059 ! large intestine +relationship: part_of UBERON:0001353 ! anal region + +[Term] +id: UBERON:0000160 +name: intestine +def: "Segment of the alimentary canal extending from the stomach to the anus and, in humans and other mammals, consists of two segments, the small intestine and the large intestine." [GOC:GO, http://en.wikipedia.org/wiki/Intestine] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "bowel" EXACT [] +synonym: "intestinal tract" RELATED [] +xref: AAO:0000246 +xref: ANISEED:1235303 +xref: BSA:0000093 +xref: BTO:0000648 +xref: CALOHA:TS-0490 +xref: EFO:0000834 +xref: EMAPA:32874 +xref: EV:0100071 +xref: FMA:7199 +xref: GAID:295 +xref: galen:Intestine +xref: http://en.wikipedia.org/wiki/Intestine +xref: http://linkedlifedata.com/resource/umls/id/C0021853 +xref: http://www.snomedbrowser.com/Codes/Details/256876008 +xref: MA:0000328 +xref: MA:0001524 +xref: MESH:A03.492.411 +xref: MIAA:0000043 +xref: NCIT:C12736 +xref: TAO:0001338 +xref: UMLS:C0021853 {source="ncithesaurus:Intestine"} +xref: VHOG:0000056 +xref: WBbt:0005772 +xref: XAO:0000129 +xref: ZFA:0001338 +is_a: UBERON:0004921 {source="cjm"} ! subdivision of digestive tract +relationship: contributes_to_morphology_of UBERON:0001007 ! digestive system +relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system + +[Term] +id: UBERON:0000161 +name: orifice +def: "Anatomical conduit that connects two adjacent body spaces (or a body space with the space surrounding the organism)[FMA,modified]." [FMA:3724] +synonym: "anatomical orifice" EXACT [FMA:3724] +synonym: "anatomical ostium" BROAD [FMA:3724] +synonym: "hilum" NARROW [] +synonym: "ostium" BROAD [] +xref: FMA:3724 +xref: http://www.snomedbrowser.com/Codes/Details/91837002 +is_a: UBERON:0004111 ! anatomical conduit + +[Term] +id: UBERON:0000162 +name: cloaca +def: "Common chamber into which the intestines and excretory system opens. Arises during development in all vertebrates, but in many it becomes subdivided, lost or incorporated into other structures" [http://en.wikipedia.org/wiki/Cloaca, ISBN:0073040584] +synonym: "cloacal chamber" RELATED [AAO:0000095] +synonym: "vent" RELATED [XAO:0000244] +xref: AAO:0000095 +xref: GAID:1206 +xref: http://en.wikipedia.org/wiki/Cloaca +xref: http://linkedlifedata.com/resource/umls/id/C0008987 +xref: http://www.snomedbrowser.com/Codes/Details/362857006 +xref: http://www.snomedbrowser.com/Codes/Details/370631000 +xref: MESH:D002988 +xref: NCIT:C34127 +xref: UMLS:C0008987 {source="ncithesaurus:Cloaca"} +xref: VHOG:0001186 +xref: XAO:0000244 +xref: ZFA:0005781 +is_a: UBERON:0013522 ! subdivision of tube +relationship: part_of UBERON:0001555 {source="ZFA"} ! digestive tract +relationship: part_of UBERON:0004122 {source="AAO"} ! genitourinary system +relationship: present_in_taxon NCBITaxon:9369 {notes="most adult placentals have no trace of a cloaca. However, the tenrecs and golden moles, small placental mammals native to Africa, retain a cloaca as adults."} + +[Term] +id: UBERON:0000163 +name: embryonic cloaca +def: "endoderm-lined chamber that develops as pouch-like dilation of the caudal end of the hindgut and receives the allantois ventrally and two mesonephric ducts laterally; caudally it ends blindly at the cloacal membrane formed by the union of proctodeal (anal pit) ectoderm and cloacal endoderm, with no intervening mesoderm[MP]." [http://en.wikipedia.org/wiki/Cloaca_(embryology), MP:0010115] +subset: pheno_slim +synonym: "cloaca" RELATED SENSU [] +xref: Cloaca:(embryology) +xref: EHDAA2:0000256 +xref: EHDAA:4895 +xref: EMAPA:27573 +is_a: UBERON:0000162 ! cloaca +relationship: has_developmental_contribution_from UBERON:0003064 ! intermediate mesoderm +relationship: part_of UBERON:0000922 ! embryo +relationship: part_of UBERON:0001008 {source="EHDAA2"} ! renal system +relationship: part_of UBERON:0012361 {source="EHDAA2"} ! internal anal region + +[Term] +id: UBERON:0000164 +name: primitive urogenital sinus +def: "the ventral part of the cloaca remaining after septation of the rectum, which further develops into part of the bladder, part of the prostatic part of the male urethra and the urethra and vestibule in females" [ISBN:0-683-40008-8, MP:0010116] +subset: pheno_slim +synonym: "fetal UGS" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/18977204] +synonym: "sinus urogenitalis" EXACT LATIN [] +synonym: "UGS" EXACT [MP:0010116] +synonym: "urogenital sinus" BROAD [MP:0010116] +xref: EHDAA2:0004060 +xref: EHDAA:5029 +xref: EHDAA:5919 +xref: EMAPA:17379 +xref: http://en.wikipedia.org/wiki/Definitive_urogenital_sinus +xref: http://linkedlifedata.com/resource/umls/id/C0231057 +xref: http://www.snomedbrowser.com/Codes/Details/50961009 +xref: NCIT:C34322 +xref: UMLS:C0231057 {source="ncithesaurus:Urogenital_Sinus"} +xref: VHOG:0000414 +is_a: UBERON:0002050 ! embryonic structure +relationship: contributes_to_morphology_of UBERON:0000163 ! embryonic cloaca +relationship: develops_from UBERON:0003064 ! intermediate mesoderm +relationship: part_of UBERON:0000163 {source="MP-def"} ! embryonic cloaca + +[Term] +id: UBERON:0000165 +name: mouth +def: "The proximal portion of the digestive tract, containing the oral cavity and bounded by the oral opening. In vertebrates, this extends to the pharynx and includes gums, lips, tongue and parts of the palate. Typically also includes the teeth, except where these occur elsewhere (e.g. pharyngeal jaws) or protrude from the mouth (tusks)." [http://en.wikipedia.org/wiki/Mouth, https://github.com/obophenotype/uberon/wiki/The-digestive-tract] +subset: efo_slim +subset: major_organ +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "adult mouth" NARROW [] +synonym: "cavital oralis" RELATED LATIN [http://en.wikipedia.org/wiki/Mouth] +synonym: "cavitas oris" RELATED [BTO:0001090] +synonym: "cavum oris" RELATED [BTO:0001090] +synonym: "mouth cavity" RELATED [BTO:0001090] +synonym: "oral region" RELATED [EHDAA2:0001326] +synonym: "oral vestibule" RELATED [BTO:0001090] +synonym: "regio oralis" EXACT [BTO:0004698] +synonym: "regio oralis" EXACT LATIN [FMA:49184, FMA:TA] +synonym: "rima oris" RELATED [BTO:0001090] +synonym: "stoma" RELATED [] +synonym: "stomatodaeum" RELATED [VHOG:0000812] +synonym: "trophic apparatus" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "vestibule of mouth" RELATED [BTO:0001090] +synonym: "vestibulum oris" RELATED [BTO:0001090] +xref: AAO:0010355 +xref: BTO:0001090 +xref: BTO:0004698 +xref: CALOHA:TS-1315 +xref: EFO:0000825 +xref: EHDAA2:0001326 +xref: EHDAA:542 +xref: EMAPA:16262 +xref: FBbt:00003126 +xref: FMA:49184 +xref: GAID:75 +xref: galen:Mouth +xref: http://en.wikipedia.org/wiki/Mouth +xref: http://purl.obolibrary.org/obo/uberon/images/lamprey_sucker_rosava_3238889218.jpg +xref: http://www.snomedbrowser.com/Codes/Details/21082005 +xref: MA:0000341 +xref: MA:0002474 +xref: MAT:0000038 +xref: MESH:D009055 +xref: MIAA:0000038 +xref: OpenCyc:Mx4rvVidh5wpEbGdrcN5Y29ycA +xref: TADS:0000040 +xref: TAO:0000547 +xref: TAO:0000590 +xref: TGMA:0000131 +xref: VHOG:0000280 +xref: VHOG:0000812 +xref: XAO:0003029 +xref: ZFA:0000547 +xref: ZFA:0000590 +is_a: UBERON:0004921 {notes="the mouth contains structures such as jaw skeleton that may not strictly be considered tract parts"} ! subdivision of digestive tract +intersection_of: UBERON:0004921 ! subdivision of digestive tract +intersection_of: proximalmost_part_of UBERON:0001555 ! digestive tract +relationship: develops_from UBERON:0035804 ! future mouth +relationship: part_of UBERON:0000033 ! head +relationship: proximalmost_part_of UBERON:0001555 ! digestive tract + +[Term] +id: UBERON:0000166 +name: oral opening +def: "The orifice that connects the mouth to the exterior of the body." [https://github.com/obophenotype/uberon/wiki/The-digestive-tract] +subset: uberon_slim +subset: vertebrate_core +synonym: "mouth" RELATED INCONSISTENT [] +synonym: "oral fissure" EXACT [FMA:59806] +synonym: "oral orifice" EXACT [FMA:59806] +synonym: "oral part of face" RELATED [] +xref: FMA:59806 +is_a: UBERON:0000161 {source="FMA"} ! orifice +relationship: part_of UBERON:0000165 ! mouth + +[Term] +id: UBERON:0000167 +name: oral cavity +def: "Anatomical cavity at the start of the digestive tract that that is enclosed by the mouth. The boundaries and contents vary depending on the species. In vertebrates, the boundaries are the oral opening, the cheeks, the palate and (if present) the palatoglossal arch - if this is not present then the mouth and pharynx form the oropharyngeal cavity. The buccal cavity contains the teeth, tongue and palate (when present)" [https://github.com/obophenotype/uberon/wiki/The-digestive-tract, https://orcid.org/0000-0002-6601-2165, ISBN:0073040584] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "bucca" RELATED [] +synonym: "buccal cavity" EXACT [FMA:20292, ISBN:0073040584] +synonym: "cavity of mouth" EXACT [] +xref: AAO:0000053 +xref: AAO:0000960 +xref: BSA:0000107 +xref: CALOHA:TS-1315 +xref: EFO:0001975 +xref: EHDAA2:0001324 +xref: EHDAA:6970 +xref: EMAPA:17411 +xref: EMAPA:18399 +xref: EV:0100057 +xref: FMA:20292 +xref: HAO:0000669 +xref: http://linkedlifedata.com/resource/umls/id/C0226896 +xref: http://www.snomedbrowser.com/Codes/Details/181220002 +xref: NCIT:C12421 +xref: TAO:0001027 +xref: TGMA:0000102 +xref: UMLS:C0226896 {source="ncithesaurus:Oral_Cavity"} +xref: VHOG:0000188 +xref: WBbt:0005255 +xref: XAO:0000126 +xref: ZFA:0001027 +is_a: UBERON:0002553 ! anatomical cavity +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0000165 ! mouth +relationship: contributes_to_morphology_of UBERON:0000165 ! mouth +relationship: luminal_space_of UBERON:0000165 ! mouth +relationship: part_of UBERON:0000165 ! mouth + +[Term] +id: UBERON:0000168 +name: proximal-distal subdivision of colon +def: "A section dividing a colon along a proximal-distal axis." [http://orcid.org/0000-0002-6601-2165] +subset: non_informative +synonym: "segment of colon" RELATED [FMA:222905] +xref: FMA:222905 +is_a: UBERON:0004921 {order="4", source="cjm"} ! subdivision of digestive tract +intersection_of: UBERON:0013522 ! subdivision of tube +intersection_of: subdivision_of UBERON:0001155 ! colon +relationship: part_of UBERON:0001155 ! colon +relationship: subdivision_of UBERON:0001155 ! colon + +[Term] +id: UBERON:0000170 +name: pair of lungs +def: "The pair of anatomical structures comprised of a left lung and right lung." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "lungs" EXACT [] +synonym: "lungs pair" EXACT [] +synonym: "pulmones" EXACT LATIN [FMA:68877, FMA:TA] +synonym: "set of lungs" EXACT [] +xref: FMA:68877 +xref: OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA +is_a: UBERON:0034925 ! anatomical collection +intersection_of: UBERON:0034925 ! anatomical collection +intersection_of: has_member UBERON:0002167 ! right lung +intersection_of: has_member UBERON:0002168 ! left lung +relationship: has_member UBERON:0002167 ! right lung +relationship: has_member UBERON:0002167 {minCardinality="1", maxCardinality="1"} ! right lung +relationship: has_member UBERON:0002168 ! left lung +relationship: has_member UBERON:0002168 {minCardinality="1", maxCardinality="1"} ! left lung +relationship: located_in UBERON:0002224 ! thoracic cavity +relationship: part_of UBERON:0001558 {source="FMA-abduced"} ! lower respiratory tract + +[Term] +id: UBERON:0000171 +name: respiration organ +def: "Organ that functions in gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms." [GO:0007585] +subset: functional_classification +subset: organ_slim +synonym: "apparatus respiratorius organ" EXACT [OBOL:automatic] +synonym: "breathing organ" EXACT [] +synonym: "gas exchange organ" RELATED [] +synonym: "organ of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "organ of respiratory system" EXACT [OBOL:automatic] +synonym: "respiratory organ" EXACT [] +synonym: "respiratory system organ" EXACT [OBOL:automatic] +xref: EMAPA:17607 +xref: http://www.snomedbrowser.com/Codes/Details/272626006 +xref: SPD:0000428 +xref: TGMA:0001247 +is_a: UBERON:0000062 ! organ +relationship: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0000172 +name: vomit +def: "A bodily fluid consisting of the expulsed contents of the stomach disgorged through the mouth or nose that happens as a result of a vomit reflex." [ENVO:00000338, http://en.wikipedia.org/wiki/Vomiting, UBERON:cjm] +synonym: "vomitus" EXACT LATIN [] +xref: ENVO:00000338 +xref: galen:Vomitus +xref: NCIT:C77666 +xref: OpenCyc:Mx4rvViQTJwpEbGdrcN5Y29ycA +is_a: UBERON:0036017 ! regurgitated substance + +[Term] +id: UBERON:0000173 +name: amniotic fluid +def: "Amniotic fluid is a bodily fluid consisting of watery liquid surrounding and cushioning a growing fetus within the amnion. It allows the fetus to move freely without the walls of the uterus being too tight against its body. Buoyancy is also provided. The composition of the fluid changes over the course of gestation. Initially, amniotic fluid is similar to maternal plasma, mainly water with electrolytes. As the fetus develops, proteins, carbohydrates, lipids, phospholipids originating from the lungs, fetal cells, and urea are deposited in the fluid." [ENVO:02000021, MP:MP] +subset: pheno_slim +synonym: "acqua amnii" RELATED LATIN [BTO:0000068] +synonym: "liquor amnii" RELATED LATIN [BTO:0000068] +xref: BTO:0000068 +xref: CALOHA:TS-0034 +xref: EMAPA:36771 +xref: ENVO:02000021 +xref: EV:0100123 +xref: FMA:305905 +xref: GAID:1155 +xref: http://linkedlifedata.com/resource/umls/id/C0002638 +xref: MA:0002893 +xref: MESH:D000653 +xref: NCIT:C13188 +xref: UMLS:C0002638 {source="ncithesaurus:Amniotic_Fluid"} +xref: VHOG:0001267 +is_a: UBERON:0000463 ! organism substance +relationship: located_in UBERON:0000305 ! amnion +relationship: surrounds UBERON:0000922 ! embryo + +[Term] +id: UBERON:0000174 +name: excreta +alt_id: UBERON:0000324 +alt_id: UBERON:0007550 +def: "A portion of organism substance that is the product of an excretion process that will be eliminated from the body. An excretion process is elimination by an organism of the waste products that arise as a result of metabolic activity" [GO:0007588, http://orcid.org/0000-0002-6601-2165] +synonym: "excreted substance" EXACT [] +synonym: "excretion" RELATED [BTO:0000491] +synonym: "portion of excreted substance" EXACT [FMA:9674] +synonym: "waste substance" EXACT [AEO:0000184] +xref: AEO:0000184 +xref: BTO:0000491 +xref: EHDAA2_RETIRED:0003184 +xref: ENVO:02000022 +xref: FMA:9674 +xref: galen:Excretion +is_a: UBERON:0000463 ! organism substance + +[Term] +id: UBERON:0000175 +name: pleural effusion +def: "Pleural effusion is a bodily fluid that is produced in exess and accumulates in the pleural cavity, the fluid-filled space that surrounds the lungs. Excessive amounts of such fluid can impair breathing by limiting the expansion of the lungs during inhalation." [ENVO:02000033] +xref: ENVO:02000033 +xref: ncithesaurus:Pleural_Effusion +xref: OpenCyc:Mx4rLaTGCK2TEduAAAAOpmP6tw +is_a: UBERON:0001087 ! pleural fluid + +[Term] +id: UBERON:0000176 +name: oronasal secretion +def: "A bodily fluid secreted from the body via the mouth or nose." [ENVO:02000035] +synonym: "oronasal discharge" NARROW [] +xref: ENVO:02000035 +is_a: UBERON:0000463 ! organism substance +relationship: produced_by UBERON:0001826 ! nasal cavity mucosa + +[Term] +id: UBERON:0000177 +name: pus +def: "Pus is a bodily fluid consisting of a whitish-yellow or yellow substance produced during inflammatory responses of the body that can be found in regions of pyogenic bacterial infections. Pus is produced from the dead and living cells which travel into the intercellular spaces around the affected cells." [ENVO:02000038, http://en.wikipedia.org/wiki/Pus] +synonym: "purulent exudate" RELATED [] +xref: ENVO:02000038 +xref: galen:Pus +xref: http://en.wikipedia.org/wiki/Pus +xref: ncithesaurus:Pus +xref: OpenCyc:Mx4rvVjG6ZwpEbGdrcN5Y29ycA +is_a: UBERON:0000463 ! organism substance + +[Term] +id: UBERON:0000178 +name: blood +def: "A fluid that is composed of blood plasma and erythrocytes." [FMA:9670, http://en.wikipedia.org/wiki/Blood, http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/9] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "portion of blood" EXACT [] +synonym: "vertebrate blood" EXACT [] +synonym: "whole blood" RELATED [BTO:0000089] +xref: AAO:0000046 +xref: BTO:0000089 +xref: CALOHA:TS-0079 +xref: EFO:0000296 +xref: EHDAA2:0000176 +xref: EHDAA:418 +xref: EMAPA:16332 +xref: ENVO:02000027 +xref: EV:0100047 +xref: FMA:9670 +xref: GAID:965 +xref: galen:Blood +xref: http://en.wikipedia.org/wiki/Blood +xref: http://linkedlifedata.com/resource/umls/id/C0005767 +xref: MA:0000059 +xref: MESH:D001769 +xref: MIAA:0000315 +xref: NCIT:C12434 +xref: OpenCyc:Mx4rvVjI8JwpEbGdrcN5Y29ycA +xref: TAO:0000007 +xref: UMLS:C0005767 {source="ncithesaurus:Blood"} +xref: VHOG:0000224 +xref: XAO:0000124 +xref: ZFA:0000007 +is_a: UBERON:0000179 ! haemolymphatic fluid +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan +relationship: develops_from UBERON:0006596 ! presumptive blood +relationship: has_part UBERON:0001969 ! blood plasma +relationship: immediate_transformation_of UBERON:0006596 {source="Bgee:AN"} ! presumptive blood +relationship: located_in UBERON:0002049 {source="https://github.com/obophenotype/uberon/issues/1330"} ! vasculature +relationship: part_of UBERON:0002390 ! hematopoietic system + +[Term] +id: UBERON:0000179 +name: haemolymphatic fluid +def: "Circulating fluid that is part of the hemolymphoid system. Blood, lymph, interstitial fluid or its analogs." [http://orcid.org/0000-0002-6601-2165] +synonym: "blood or blood analog" RELATED [] +synonym: "circulating fluid" RELATED [] +xref: CARO:0000081 +is_a: UBERON:0006314 ! bodily fluid +intersection_of: UBERON:0000463 ! organism substance +intersection_of: part_of UBERON:0002193 ! hemolymphoid system +relationship: part_of UBERON:0002193 ! hemolymphoid system +created_by: cjm +creation_date: 2009-04-08T04:38:19Z + +[Term] +id: UBERON:0000180 +name: lateral lumbar region of abdomen +def: "A region of the posterior torso (lower back) beneath the ribs and above the ilium." [http://en.wikipedia.org/wiki/Abdomen#9-region_scheme, http://en.wikipedia.org/wiki/Latus_(anatomy)] +synonym: "flank" EXACT [http://en.wikipedia.org/wiki/Latus_(anatomy)] +synonym: "lateral region" EXACT [FMA:14603] +synonym: "lateral region of abdomen" EXACT [FMA:14603] +synonym: "latus" EXACT [FMA:14603] +synonym: "regio lateralis" EXACT [FMA:14603] +xref: CALOHA:TS-2336 +xref: FMA:14603 +xref: galen:Flank +xref: http://linkedlifedata.com/resource/umls/id/C0230171 +xref: http://www.snomedbrowser.com/Codes/Details/243329008 +xref: Latus:(anatomy) +xref: NCIT:C93028 +xref: UMLS:C0230171 {source="ncithesaurus:Flank"} +is_a: UBERON:0000475 ! organism subdivision +relationship: part_of UBERON:0000916 ! abdomen + +[Term] +id: UBERON:0000199 +name: neck of radius +def: "The narrow part of the shaft of the radius just below the head." [http://www.medilexicon.com/medicaldictionary.php?t=58913] +subset: pheno_slim +synonym: "collum radii" EXACT [_rib] +synonym: "radial neck" EXACT [FMA:23479] +xref: FMA:23479 +xref: galen:NeckOfRadius +xref: http://www.snomedbrowser.com/Codes/Details/181942005 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +is_a: UBERON:0018664 ! neck of bone element +intersection_of: UBERON:0001560 ! neck of organ +intersection_of: part_of UBERON:0001423 ! radius bone +relationship: part_of UBERON:0004413 {source="FMA"} ! proximal epiphysis of radius + +[Term] +id: UBERON:0000200 +name: gyrus +def: "A ridge on the cerebral cortex. It is generally surrounded by one or more sulci ." [http://en.wikipedia.org/wiki/Gyrus, https://github.com/obophenotype/uberon/issues/573] +subset: pheno_slim +synonym: "cerebral gyrus" EXACT [BTO:0002495] +synonym: "folia" RELATED PLURAL [] +synonym: "folium" RELATED [PHENOSCAPE:wd] +synonym: "folium of brain" RELATED [] +synonym: "gyri" RELATED PLURAL [BTO:0002495] +synonym: "gyri of cerebrum" RELATED PLURAL [BTO:0002495] +synonym: "gyrus of cerebral hemisphere" RELATED [FMA:83874] +synonym: "gyrus of cerebrum" RELATED [BTO:0002495] +synonym: "gyrus of neuraxis" EXACT [FMA:83874] +synonym: "neuraxis gyrus" EXACT [FMA:83874] +xref: BTO:0002495 +xref: FMA:83874 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1211 +xref: http://en.wikipedia.org/wiki/Gyrus +xref: http://linkedlifedata.com/resource/umls/id/C0458308 +xref: http://www.snomedbrowser.com/Codes/Details/279165009 +xref: NCIT:C32290 +xref: UMLS:C0458308 {source="ncithesaurus:Cerebral_Gyrus"} +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0034768 ! morphological feature +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/RDruzinsky +property_value: dc-contributor https://github.com/wdahdul +relationship: dubious_for_taxon NCBITaxon:10088 +relationship: fma_set_term FMA:72015 +relationship: part_of UBERON:0001869 ! cerebral hemisphere +relationship: surrounded_by UBERON:0013118 ! sulcus of brain + +[Term] +id: UBERON:0000201 +name: endothelial blood brain barrier +def: "A blood brain barrier that is composed of endothelial cells." [https://orcid.org/0000-0002-6601-2165] +xref: NIF_Subcellular:nlx_subcell_100205 +is_a: UBERON:0000120 ! blood brain barrier +is_a: UBERON:0001986 ! endothelium +created_by: cjm +creation_date: 2009-04-10T08:15:44Z + +[Term] +id: UBERON:0000202 +name: glial blood brain barrier +def: "A blood brain barrier composed of glial cells." [https://orcid.org/0000-0002-6601-2165] +xref: FBbt:00007091 +is_a: UBERON:0000120 ! blood brain barrier +created_by: cjm +creation_date: 2009-04-10T08:42:24Z + +[Term] +id: UBERON:0000203 +name: pallium +alt_id: UBERON:0007333 +def: "Dorsal part (roof region) of the telencephalon[GO]." [GO:0021543, http://en.wikipedia.org/wiki/Pallium_(neuroanatomy), https://github.com/obophenotype/uberon/issues/287, ISBN:0471888893] +subset: developmental_classification +subset: efo_slim +synonym: "area dorsalis telencephali" EXACT [ZFA:0000505] +synonym: "dorsal part of telencephalon" EXACT [ISBN:0471888893] +synonym: "dorsal telencephalic area" EXACT [ZFA:0000505] +synonym: "dorsal telencephalon" EXACT [ZFA:0000505] +xref: Avian:pallium +xref: BTO:0003399 +xref: DMBA:15903 +xref: EFO:0003534 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3240 +xref: http://www.snomedbrowser.com/Codes/Details/369224000 +xref: Pallium:(neuroanatomy) +xref: TAO:0000505 +xref: TAO:0007007 +xref: ZFA:0000505 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001893 ! telencephalon +relationship: present_in_taxon NCBITaxon:7762 {source="http://www.ncbi.nlm.nih.gov/pubmed/8932866"} +created_by: cjm +creation_date: 2009-04-18T12:03:09Z + +[Term] +id: UBERON:0000204 +name: ventral part of telencephalon +def: "Ventral part (base region) of the telencephalon." [GO:0021544, GO_REF:0000021, http://www.ncbi.nlm.nih.gov/pubmed/12626695, ISBN:0471888893] +subset: developmental_classification +subset: efo_slim +synonym: "area ventralis telencephali" EXACT [ZFA:0000304] +synonym: "subpallium" EXACT [GO:0021544, ZFA:0000304] +synonym: "subpallium" NARROW [BTO:0003401, NCBITaxon:8782] +synonym: "ventral telencephalon" EXACT [ZFA:0000304] +xref: BTO:0003401 +xref: DMBA:15751 +xref: EFO:0003522 +xref: TAO:0000304 +xref: ZFA:0000304 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: dorsal_to UBERON:0000203 {notes="separated by cell-free region"} ! pallium +relationship: part_of UBERON:0001893 ! telencephalon +created_by: cjm +creation_date: 2009-04-18T12:12:27Z + +[Term] +id: UBERON:0000205 +name: papula +def: "A thin protuberance on the surface of the body of an echinoderm containing diverticula of the water vascular system lined by ciliated peritoneum. Along with tube feet, provide the principle gas exchange surfaces.." [ISBN:0030229073] +synonym: "papulae" EXACT PLURAL [ISBN:0030229073] +synonym: "papulli" EXACT PLURAL [] +xref: http://en.wikipedia.org/wiki/Papula +is_a: UBERON:0002535 ! gill +created_by: cjm +creation_date: 2009-04-18T01:13:57Z + +[Term] +id: UBERON:0000206 +name: pharyngeal gill +def: "A gill that develops in the walls of the pharynx along a series of gill slits opening to the exterior. In fish, the gills are located on both sides of the pharynx." [http://en.wikipedia.org/wiki/Gill#Vertebrate_gills] +xref: ANISEED:1235300 +xref: Vertebrate_gills +is_a: UBERON:0002535 ! gill +relationship: adjacent_to UBERON:0001042 ! chordate pharynx +created_by: cjm +creation_date: 2009-04-18T01:18:17Z + +[Term] +id: UBERON:0000207 +name: compound eye corneal lens +def: "A chitinous extracellular secretion of the four underlying cone cells and the pigment cells." [GO:0048058] +synonym: "acellular lens" RELATED [] +xref: FBbt:00004199 +xref: TADS:0000304 +is_a: UBERON:0000476 ! acellular anatomical structure +is_a: UBERON:0005389 ! transparent eye structure +disjoint_from: UBERON:0000965 ! lens of camera-type eye +relationship: part_of UBERON:0000018 ! compound eye +created_by: cjm +creation_date: 2009-04-18T01:35:32Z + +[Term] +id: UBERON:0000208 +name: obsolete cellular lens +is_obsolete: true +replaced_by: UBERON:0000965 +created_by: cjm +creation_date: 2009-04-18T01:37:39Z + +[Term] +id: UBERON:0000209 +name: tetrapod frontal bone +def: "the bone forming the forehead and roof of the eye orbit" [http://en.wikipedia.org/wiki/Frontal_bone, http://www.ncbi.nlm.nih.gov/pubmed/7914451, ISBN:0-683-40008-8, MP:0000107] +subset: pheno_slim +synonym: "frontal" NARROW [AAO:0000206] +synonym: "frontal bone" NARROW SENSU [FMA:52734, MA:0001466] +synonym: "frontal bone" NARROW HUMAN_PREFERRED [FMA:52734, MA:0001466] +synonym: "os frontal" NARROW SENSU [http://en.wikipedia.org/wiki/Frontal_bone] +synonym: "os frontale" RELATED LATIN [http://en.wikipedia.org/wiki/Frontal_bone] +xref: AAO:0000206 +xref: EMAPA:19016 +xref: FMA:52734 +xref: Frontal:bone +xref: GAID:226 +xref: http://linkedlifedata.com/resource/umls/id/C0016732 +xref: http://www.snomedbrowser.com/Codes/Details/181793006 +xref: MA:0001466 +xref: MESH:D005624 +xref: NCIT:C32635 +xref: UMLS:C0016732 {source="ncithesaurus:Frontal_Bone"} +xref: VHOG:0001324 +xref: VSAO:0000208 +is_a: UBERON:0002514 ! intramembranous bone +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0010428 {source="FMA"} ! flat bone +is_a: UBERON:0011164 ! neurocranium bone +relationship: part_of UBERON:0003113 {source="cjm"} ! dermatocranium + +[Term] +id: UBERON:0000210 +name: tetrapod parietal bone +def: "In humans: bone forming side and roof of cranium. Each bone is irregularly quadrilateral in form, and has two surfaces, four borders, and four angles." [http://en.wikipedia.org/wiki/Parietal_bone, ZFA:0000514] +subset: pheno_slim +synonym: "actinopterygian frontal bone" NARROW [TAO:0000514] +synonym: "frontal bone" NARROW [TAO:0000514] +synonym: "os parietale" RELATED [http://en.wikipedia.org/wiki/Parietal_bone] +synonym: "os parietale" RELATED LATIN [http://en.wikipedia.org/wiki/Parietal_bone] +synonym: "parietal" NARROW SENSU [AAO:0000390] +synonym: "parietal bone" NARROW SENSU [FMA:9613] +xref: AAO:0000390 +xref: EMAPA:18715 +xref: FMA:9613 +xref: GAID:229 +xref: http://linkedlifedata.com/resource/umls/id/C0030558 +xref: http://www.snomedbrowser.com/Codes/Details/181794000 +xref: MA:0001469 +xref: MESH:D010294 +xref: NCIT:C12766 +xref: Parietal:bone +xref: UMLS:C0030558 {source="ncithesaurus:Parietal_Bone"} +xref: VHOG:0001324 +xref: VHOG:0001326 +is_a: UBERON:0002514 ! intramembranous bone +is_a: UBERON:0010428 {source="FMA"} ! flat bone +is_a: UBERON:0011164 ! neurocranium bone +relationship: contributes_to_morphology_of UBERON:0004339 ! vault of skull +relationship: part_of UBERON:0004339 {source="http://www.ncbi.nlm.nih.gov/pubmed/11523816"} ! vault of skull + +[Term] +id: UBERON:0000211 +name: ligament +def: "Dense regular connective tissue connecting two or more adjacent skeletal elements or supporting an organ." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000073] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "ligament organ" EXACT [FMA:21496] +xref: CALOHA:TS-2145 +xref: EFO:0001966 +xref: EMAPA:35493 +xref: FMA:21496 +xref: FMA:30319 +xref: galen:Ligament +xref: http://en.wikipedia.org/wiki/Ligament +xref: http://linkedlifedata.com/resource/umls/id/C0023685 +xref: http://www.snomedbrowser.com/Codes/Details/182358004 +xref: MA:0000113 +xref: MESH:D008022 +xref: NCIT:C13046 +xref: OpenCyc:Mx4rvVjqpZwpEbGdrcN5Y29ycA +xref: TAO:0001682 +xref: UMLS:C0023685 {source="ncithesaurus:Ligament"} +xref: VHOG:0001272 +xref: XAO:0004031 +xref: ZFA:0001675 +is_a: UBERON:0000062 ! organ +relationship: has_part UBERON:0002384 ! connective tissue + +[Term] +id: UBERON:0000212 +name: toilet claw +def: "A specialized claw or nail on the foot of certain primates, used for personal grooming." [http://en.wikipedia.org/wiki/Toilet-claw] +xref: http://en.wikipedia.org/wiki/Toilet-claw +is_a: UBERON:0001705 ! nail +created_by: cjm +creation_date: 2009-05-19T08:19:58Z + +[Term] +id: UBERON:0000218 +name: vertebral arch of axis +def: "A neural arch that is part of a vertebral bone 2." [OBOL:automatic] +synonym: "vertebral foramen of cervical vertebra 2" EXACT [] +xref: FMA:24053 +is_a: UBERON:0003861 ! neural arch +intersection_of: UBERON:0003861 ! neural arch +intersection_of: part_of UBERON:0001093 ! vertebral bone 2 +relationship: part_of UBERON:0001093 ! vertebral bone 2 + +[Term] +id: UBERON:0000219 +name: vertebral foramen of atlas +def: "." [http://en.wikipedia.org/wiki/Atlas_(anatomy)#Vertebral_foramen] +synonym: "vertebral foramen of cervical vertebra 1" EXACT [] +xref: FMA:24293 +xref: http://www.snomedbrowser.com/Codes/Details/281228008 +xref: Vertebral_foramen +is_a: UBERON:0001131 ! vertebral foramen +is_a: UBERON:0005744 ! bone foramen +intersection_of: UBERON:0001131 ! vertebral foramen +intersection_of: part_of UBERON:0001092 ! vertebral bone 1 +relationship: part_of UBERON:0001092 ! vertebral bone 1 + +[Term] +id: UBERON:0000220 +name: atlanto-occipital joint +def: "The Atlanto-occipital joint (articulation between the atlas and the occipital bone) consists of a pair of condyloid joints. The atlanto-occipital joint is a synovial joint. The ligaments connecting the bones are: Two Articular capsules; Posterior atlantoöccipital membrane; Anterior atlantoöccipital membrane; Lateral atlantoöccipital" [http://en.wikipedia.org/wiki/Atlanto-occipital_joint] +synonym: "articulatio atlanto-occipitalis" EXACT [FMA:24939] +synonym: "articulatio atlantooccipitalis" RELATED LATIN [http://en.wikipedia.org/wiki/Atlanto-occipital_joint] +synonym: "atlanto occipital joint" EXACT [] +synonym: "atlantooccipital joint" EXACT [] +synonym: "craniovertebral joint" EXACT [FMA:24939] +synonym: "occipito atlantal joint" EXACT [] +synonym: "occipito-atlantal joint" EXACT [] +xref: Atlanto-occipital:joint +xref: FMA:24939 +xref: http://linkedlifedata.com/resource/umls/id/C0004169 +xref: http://www.snomedbrowser.com/Codes/Details/361831006 +xref: NCIT:C32158 +xref: ncithesaurus:Atlanto-occipital_Joint-Atlanto +xref: UMLS:C0004169 {source="ncithesaurus:Atlanto-occipital_Joint"} +is_a: UBERON:0002217 ! synovial joint +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0002217 ! synovial joint +intersection_of: connects UBERON:0001092 ! vertebral bone 1 +intersection_of: connects UBERON:0001676 ! occipital bone +relationship: connects UBERON:0001092 ! vertebral bone 1 +relationship: connects UBERON:0001676 ! occipital bone +relationship: in_lateral_side_of UBERON:0006072 {source="FMA-abduced-lr"} ! cervical region of vertebral column +relationship: part_of UBERON:0006072 ! cervical region of vertebral column + +[Term] +id: UBERON:0000221 +name: supraauricular point +def: "A craniometric point on the posterior root of the zygomatic process of the temporal bone directly above the auricular point." [http://www.medilexicon.com/medicaldictionary.php?t=70620] +synonym: "supra-auricular part of head" EXACT [FMA:224222] +xref: FMA:224222 +is_a: UBERON:0006983 {source="FMA"} ! anatomical point +relationship: part_of UBERON:0004655 ! zygomatic process of temporal bone + +[Term] +id: UBERON:0000301 +name: amniotic cavity +def: "A closed space between the embryo and the amnion which contains the amniotic fluid and is formed by the fusion of the parts of the anterior and posterior amniotic folds." [MP:0011199] +subset: pheno_slim +synonym: "cavitas amniotica" RELATED LATIN [http://en.wikipedia.org/wiki/Amniotic_cavity] +xref: Amniotic:cavity +xref: BTO:0000025 +xref: EHDAA2:0000119 +xref: EHDAA:83 +xref: EMAPA:16079 +xref: FMA:63941 +xref: http://linkedlifedata.com/resource/umls/id/C0230976 +xref: http://www.snomedbrowser.com/Codes/Details/280366002 +xref: NCIT:C34102 +xref: UMLS:C0230976 {source="ncithesaurus:Amniotic_Cavity"} +xref: VHOG:0000855 +is_a: UBERON:0012466 ! extraembryonic cavity +is_a: UBERON:0012467 ! enclosed anatomical space +relationship: contains UBERON:0000173 ! amniotic fluid +relationship: develops_from UBERON:0000087 {source="EHDAA2"} ! inner cell mass +relationship: develops_from UBERON:0009742 {source="cjm"} ! proamniotic cavity +relationship: surrounded_by UBERON:0005971 {source="cjm"} ! amniotic fold + +[Term] +id: UBERON:0000303 +name: adductor longus +def: "An adductor muscle that attaches to the hip and femur. In humans, it is a part of the adductor group of the thigh, that as the name suggests adducts the thigh. The adductor longus muscle forms the medial wall of the femoral triangle[WP, generalized]." [http://en.wikipedia.org/wiki/Adductor_longus_muscle] +subset: pheno_slim +synonym: "adductor longus muscle" EXACT [] +synonym: "long adductor muscle" RELATED [BTO:0000029] +synonym: "musculus adductor longus" RELATED [BTO:0000029] +synonym: "musculus adductor longus" RELATED LATIN [http://en.wikipedia.org/wiki/Adductor_longus_muscle] +xref: AAO:0010034 +xref: BTO:0000029 +xref: EMAPA:36220 +xref: FMA:22441 +xref: http://en.wikipedia.org/wiki/Adductor_longus_muscle +xref: http://www.snomedbrowser.com/Codes/Details/181686003 +is_a: UBERON:0004252 ! hindlimb stylopod muscle +is_a: UBERON:0011144 {source="Wikipedia"} ! adductor muscle of hip +relationship: has_muscle_insertion UBERON:0000981 {notes="linea aspera", source="dbpedia"} ! femur +relationship: has_muscle_origin UBERON:0001275 {notes="pubic body just below the pubic crest", source="dbpedia"} ! pubis + +[Term] +id: UBERON:0000304 +name: tendon sheath +def: "A layer of membrane around a tendon. It has 2 layers: synovial sheath + fibrous tendon sheath" [http://en.wikipedia.org/wiki/Tendon_sheath] +synonym: "synovial tendon sheath" EXACT [FMA:45087] +synonym: "vagina tendinis" RELATED LATIN [http://en.wikipedia.org/wiki/Tendon_sheath] +xref: BTO:0000051 +xref: FMA:45087 +xref: FMA:76715 +xref: http://linkedlifedata.com/resource/umls/id/C0224856 +xref: http://www.snomedbrowser.com/Codes/Details/361885006 +xref: NCIT:C96299 +xref: Tendon:sheath +xref: UMLS:C0224856 {source="ncithesaurus:Tendon_Sheath"} +is_a: UBERON:0004923 ! organ component layer +intersection_of: UBERON:0004923 ! organ component layer +intersection_of: bounding_layer_of UBERON:0000043 ! tendon +relationship: bounding_layer_of UBERON:0000043 ! tendon +relationship: has_part UBERON:0011233 ! synovial membrane of synovial tendon sheath +relationship: has_part UBERON:0011234 ! fibrous membrane of synovial tendon sheath +relationship: part_of UBERON:0000043 ! tendon + +[Term] +id: UBERON:0000305 +name: amnion +def: "the thin innermost layer of the extraembryonic membranes that contains the amniotic fluid; the membrane forms a closed sac in which the embryo and later, the fetus, is suspended and protected" [MGI:csmith, MP:0005029] +subset: pheno_slim +synonym: "amnios" EXACT [http://placentation.ucsd.edu/glossfs.html] +xref: BTO:0000065 +xref: CALOHA:TS-0033 +xref: EHDAA2:0000116 +xref: EHDAA:136 +xref: EMAPA:16109 +xref: EV:0100122 +xref: FMA:80223 +xref: GAID:1298 +xref: http://en.wikipedia.org/wiki/Amnion +xref: http://linkedlifedata.com/resource/umls/id/C0002630 +xref: http://www.snomedbrowser.com/Codes/Details/181457005 +xref: MESH:A16.254.403.277 +xref: NCIT:C12365 +xref: UMLS:C0002630 {source="ncithesaurus:Amnion"} +xref: VHOG:0000721 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005631 ! extraembryonic membrane +relationship: develops_from UBERON:0005971 {source="ISBN:0073040584"} ! amniotic fold +relationship: has_developmental_contribution_from UBERON:0000924 {source="ISBN:0073040584-table5.4"} ! ectoderm +relationship: has_developmental_contribution_from UBERON:0004871 {source="ISBN:0073040584-table5.4"} ! somatic layer of lateral plate mesoderm +relationship: has_part UBERON:0003254 ! amniotic ectoderm +relationship: has_part UBERON:0003262 ! amniotic mesoderm +relationship: surrounds UBERON:0000922 ! embryo + +[Term] +id: UBERON:0000307 +name: blastula +alt_id: UBERON:0007011 +def: "Organism at the blastula stage - an early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence." [http://en.wikipedia.org/wiki/Blastula] +subset: inconsistent_with_fma +synonym: "blastosphere" RELATED [http://en.wikipedia.org/wiki/Blastula] +synonym: "blastula embryo" EXACT [BILA:0000059] +xref: BILA:0000059 +xref: BTO:0000128 +xref: GAID:1294 +xref: http://en.wikipedia.org/wiki/Blastula +xref: MESH:A16.254.270.274 +xref: OGEM:000006 +xref: OpenCyc:Mx4rEetFnKP2EdqAAAACs4vPlg +is_a: UBERON:0000922 ! embryo +intersection_of: UBERON:0000468 ! multicellular organism +intersection_of: existence_starts_and_ends_during UBERON:0000108 ! blastula stage +relationship: develops_from UBERON:0007010 ! cleaving embryo +relationship: existence_starts_and_ends_during UBERON:0000108 ! blastula stage + +[Term] +id: UBERON:0000309 +name: body wall +def: "The external portion of an animal body derived from ectoderm and mesoderm layers that encloses the body cavity." [MP:0003385] +subset: pheno_slim +synonym: "trunk wall" NARROW [FMA:10427] +synonym: "wall fo trunk" EXACT [FMA:10427] +synonym: "wall of trunk" NARROW [FMA:10427] +xref: BTO:0000139 +xref: EMAPA:32761 +xref: FMA:10427 +xref: galen:BodyWall +xref: http://www.snomedbrowser.com/Codes/Details/281483004 +is_a: UBERON:0000475 ! organism subdivision + +[Term] +id: UBERON:0000310 +name: breast +def: "The upper ventral region of the torso of an organism." [http://en.wikipedia.org/wiki/Breast] +subset: pheno_slim +synonym: "mamma" RELATED LATIN [http://en.wikipedia.org/wiki/Breast] +synonym: "mammary part of chest" EXACT [FMA:9601] +synonym: "mammary region" EXACT [FMA:9601] +xref: BTO:0000149 +xref: CALOHA:TS-2083 +xref: EV:0100124 +xref: FMA:9601 +xref: GAID:33 +xref: galen:Breast +xref: http://en.wikipedia.org/wiki/Breast +xref: http://linkedlifedata.com/resource/umls/id/C0006141 +xref: http://www.snomedbrowser.com/Codes/Details/181131000 +xref: MESH:D001940 +xref: NCIT:C12971 +xref: OpenCyc:Mx4rvVjV7ZwpEbGdrcN5Y29ycA +xref: UMLS:C0006141 {source="ncithesaurus:Breast"} +is_a: UBERON:0034929 ! external soft tissue zone +relationship: part_of UBERON:0001443 ! chest + +[Term] +id: UBERON:0000311 +name: extensor muscle +def: "a skeletal muscle whose contraction extends or stretches a body part." [http://www.thefreedictionary.com/extensor+muscle, https://github.com/obophenotype/uberon/issues/57] +comment: Any of the muscles that increase the angle between segments of a limb, E.g. straightening the elbow or knee or bending the wrist or spine backward. The movement is usually directed backward, with the notable exception of the knee joint. In humans, certain muscles of the hand and foot are named for this function. In the hand these include the extensor carpi radialis brevis, extensor carpi radialis longus, and extensor carpi ulnaris, which run from the humerus along the back of the forearm to the metacarpal bones at the back of the hand. [http://www.britannica.com/EBchecked/topic/198909/extensor-muscle] +subset: pheno_slim +synonym: "extensor" RELATED [] +xref: BTO:0000151 +xref: FMA:75000 +is_a: UBERON:0014892 ! skeletal muscle organ +property_value: dc-contributor https://github.com/cmungall +relationship: develops_from UBERON:0010962 ! extensor pre-muscle mass +relationship: part_of UBERON:0000026 ! appendage + +[Term] +id: UBERON:0000312 +name: inner cambium layer of periosteum +synonym: "cambial layer" EXACT [FMA:234358] +synonym: "cambial layer of periosteum" EXACT [FMA:234358] +synonym: "cambium" EXACT [] +synonym: "cambium layer of periosteum" EXACT [FMA:234358] +synonym: "inner cambial layer of periosteum" EXACT [FMA:234358] +synonym: "internal layer of periosteum" EXACT [] +synonym: "internal periosteum" EXACT [] +synonym: "osteogenic layer of periosteum" EXACT [http://en.wikipedia.org/wiki/Periosteum] +xref: FMA:234358 +is_a: UBERON:0000158 ! membranous layer +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: composed_primarily_of UBERON:0011824 ! fibrous connective tissue +relationship: part_of UBERON:0002515 {source="FMA"} ! periosteum + +[Term] +id: UBERON:0000313 +name: portion of cartilage tissue in tibia +def: "Cartilage pertaining to the tibia." [Dorlands_Medical_Dictionary:MerckSource] +synonym: "cartilage of tibia" RELATED [FMA:33923] +synonym: "tibial cartilage" EXACT [] +xref: BTO:0000207 +xref: FMA:33923 +is_a: UBERON:0004270 ! lower leg connective tissue +is_a: UBERON:0007391 ! pelvic appendage cartilage tissue +intersection_of: UBERON:0002418 ! cartilage tissue +intersection_of: part_of UBERON:0000979 ! tibia +relationship: part_of UBERON:0000979 ! tibia + +[Term] +id: UBERON:0000314 +name: cecum mucosa +def: "A mucosa that is part of a cecum [Automatically generated definition]." [OBOL:automatic] +synonym: "caecum mucosa" EXACT [OBOL:automatic] +synonym: "caecum mucosa of organ" EXACT [OBOL:automatic] +synonym: "caecum mucous membrane" EXACT [OBOL:automatic] +synonym: "caecum organ mucosa" EXACT [OBOL:automatic] +synonym: "cecal mucosa" EXACT [FMA:14998] +synonym: "cecum mucosa of organ" EXACT [OBOL:automatic] +synonym: "cecum mucous membrane" EXACT [OBOL:automatic] +synonym: "cecum organ mucosa" EXACT [OBOL:automatic] +synonym: "intestinum crassum caecum mucosa" EXACT [OBOL:automatic] +synonym: "intestinum crassum caecum mucosa of organ" EXACT [OBOL:automatic] +synonym: "intestinum crassum caecum mucous membrane" EXACT [OBOL:automatic] +synonym: "intestinum crassum caecum organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of caecum" EXACT [OBOL:automatic] +synonym: "mucosa of cecum" EXACT [OBOL:automatic] +synonym: "mucosa of intestinum crassum caecum" EXACT [OBOL:automatic] +synonym: "mucosa of organ of caecum" EXACT [OBOL:automatic] +synonym: "mucosa of organ of cecum" EXACT [OBOL:automatic] +synonym: "mucosa of organ of intestinum crassum caecum" EXACT [OBOL:automatic] +synonym: "mucous membrane of caecum" EXACT [OBOL:automatic] +synonym: "mucous membrane of cecum" EXACT [OBOL:automatic] +synonym: "mucous membrane of intestinum crassum caecum" EXACT [OBOL:automatic] +synonym: "organ mucosa of caecum" EXACT [OBOL:automatic] +synonym: "organ mucosa of cecum" EXACT [OBOL:automatic] +synonym: "organ mucosa of intestinum crassum caecum" EXACT [OBOL:automatic] +xref: BTO:0000213 +xref: FMA:14998 +is_a: UBERON:0000317 ! colonic mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001153 ! caecum +relationship: part_of UBERON:0001153 ! caecum + +[Term] +id: UBERON:0000315 +name: subarachnoid space +def: "The space between the arachnoid and pia mater." [GOC:add, http://en.wikipedia.org/wiki/Subarachnoid_space, https://sourceforge.net/p/obo/mammalian-phenotype-requests/1168/] +subset: pheno_slim +synonym: "cavitas subarachnoidea" RELATED LATIN [BTO:0000230] +synonym: "cavum subarachnoideale" RELATED LATIN [http://en.wikipedia.org/wiki/Subarachnoid_space] +synonym: "spatium leptomeningeum" RELATED LATIN [BTO:0000230] +synonym: "spatium subarachnoideum" RELATED LATIN [BTO:0000230] +synonym: "spatium subarachnoideum" RELATED LATIN [http://en.wikipedia.org/wiki/Subarachnoid_space] +synonym: "subarachnoid cavity" RELATED [BTO:0000230] +xref: BTO:0000230 +xref: EMAPA:32666 +xref: FMA:83716 +xref: GAID:689 +xref: http://www.snomedbrowser.com/Codes/Details/362311001 +xref: MESH:D013346 +xref: Subarachnoid:space +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: adjacent_to UBERON:0002361 ! pia mater +intersection_of: adjacent_to UBERON:0002362 ! arachnoid mater +relationship: adjacent_to UBERON:0002361 ! pia mater +relationship: adjacent_to UBERON:0002362 ! arachnoid mater +relationship: contains UBERON:0001359 ! cerebrospinal fluid +relationship: contains UBERON:0001981 {source="ISBN:0471888893"} ! blood vessel +relationship: part_of UBERON:0000955 ! brain + +[Term] +id: UBERON:0000316 +name: cervical mucus +def: "A substance produced by the cervix and endocervical glands[BTO]. Thick acidic mucus that blocks the cervical os after mestruation[WP]. This 'infertile' mucus blocks spermatozoa from entering the uterus." [BTO:0000242, http://en.wikipedia.org/wiki/Cervix#Cervical_mucus, http://en.wikipedia.org/wiki/Mucus#Reproductive_system] +synonym: "cervix mucus" EXACT [OBOL:automatic] +xref: BTO:0000242 +xref: FMA:83689 +xref: MESH:D002582 +xref: Reproductive_system +is_a: UBERON:0000912 ! mucus +intersection_of: UBERON:0000912 ! mucus +intersection_of: produced_by UBERON:0000002 ! uterine cervix +relationship: produced_by UBERON:0000002 ! uterine cervix + +[Term] +id: UBERON:0000317 +name: colonic mucosa +alt_id: UBERON:0003347 +alt_id: UBERON:0004981 +def: "Mucosa that is part of a colon. The mucosa of the colon is lined by a simple columnar epithelium with a thin brush border and numerous goblet cells." [http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +synonym: "colon mucosa" EXACT [FMA:14984] +synonym: "colon mucous membrane" EXACT [OBOL:automatic] +synonym: "colonic mucosa" EXACT [] +synonym: "colonic mucous membrane" EXACT [FMA:14984] +synonym: "large bowel mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of colon" EXACT [FMA:14984] +synonym: "mucosa of large bowel" EXACT [OBOL:automatic] +xref: BTO:0000271 +xref: CALOHA:TS-0164 +xref: EFO:0003038 +xref: EMAPA:27375 +xref: FMA:14984 +xref: FMA:85388 +xref: http://www.snomedbrowser.com/Codes/Details/362157008 +xref: MA:0003194 +is_a: UBERON:0001207 ! mucosa of large intestine +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001155 ! colon +relationship: part_of UBERON:0001155 ! colon + +[Term] +id: UBERON:0000319 +name: cytotrophoblast +def: "The inner layer of the trophoblast, interior to the syncytiotrophoblast in an embryo. It serves to anchor the embryonic chorion to the maternal endometrium. Cytotrophoblasts are stem cells in the chorionic villi. During differentiation, mononuclear cytotrophoblast fuse together into the multinucleated syncytiotrophoblasts. The primary villi has only the cytotrophoblast as an axe. [WP,unvetted]." [http://en.wikipedia.org/wiki/Cytotrophoblast, http://placentation.ucsd.edu/glossfs.html] +synonym: "cellular trophoblast" EXACT [FMA:83039] +synonym: "cytotrophoblastic cell" RELATED [FMA:83039] +synonym: "cytotrophoblastic cell layer" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "cytotrophoblastus" RELATED LATIN [http://en.wikipedia.org/wiki/Cytotrophoblast] +synonym: "Langhans' layer" RELATED [http://en.wikipedia.org/wiki/Cytotrophoblast] +synonym: "layer of Langhans" RELATED [http://en.wikipedia.org/wiki/Cytotrophoblast] +xref: BTO:0000322 +xref: EHDAA:127 +xref: EHDAA:152 +xref: EHDAA:89 +xref: EMAPA:16067 +xref: FMA:83039 +xref: http://en.wikipedia.org/wiki/Cytotrophoblast +xref: http://linkedlifedata.com/resource/umls/id/C0230960 +xref: http://www.snomedbrowser.com/Codes/Details/308841008 +xref: NCIT:C33919 +xref: UMLS:C0230960 {source="ncithesaurus:Cytotrophoblast"} +xref: VHOG:0000683 +is_a: UBERON:0002050 ! embryonic structure +relationship: adjacent_to UBERON:0000371 ! syncytiotrophoblast +relationship: adjacent_to UBERON:0000453 ! decidua basalis +relationship: part_of UBERON:0000088 ! trophoblast + +[Term] +id: UBERON:0000320 +name: duodenal mucosa +alt_id: UBERON:0003348 +def: "A mucosa that is part of a duodenum [Automatically generated definition]." [OBOL:automatic] +synonym: "doudenal mucosa" EXACT [FMA:14942] +synonym: "duodenal mucous membrane" EXACT [FMA:14942] +synonym: "duodenum mucosa" RELATED [BTO:0000367] +synonym: "mucosa of duodenum" EXACT [OBOL:automatic] +synonym: "mucous membrane of duodenum" EXACT [OBOL:automatic] +xref: BTO:0000367 +xref: CALOHA:TS-0213 +xref: EMAPA:27235 +xref: FMA:14942 +xref: http://www.snomedbrowser.com/Codes/Details/362146003 +xref: MA:0003207 +is_a: UBERON:0001204 ! mucosa of small intestine +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0002114 ! duodenum +relationship: part_of UBERON:0002114 ! duodenum + +[Term] +id: UBERON:0000323 +name: late embryo +def: "An embryo that is at the late embryonic stage; this stage covers late steps of the embryogenesis with a fully formed embryo still developing before birth or egg hatching." [BGEE:ANiknejad] +subset: efo_slim +subset: pheno_slim +synonym: "embryo late growth stage" RELATED [BTO:0000449] +synonym: "embryo late stage" RELATED [BTO:0000449] +synonym: "fetus" NARROW [BTO:0000449] +xref: BTO:0000449 +xref: CALOHA:TS-0360 +xref: EFO:0001323 +xref: FBbt:00005333 +xref: FMA:63919 +xref: GAID:552 +xref: http://linkedlifedata.com/resource/umls/id/C0015965 +xref: http://www.snomedbrowser.com/Codes/Details/83418008 +xref: MESH:D005333 +xref: NCIT:C13235 +xref: OpenCyc:Mx4rvZfC2ZwpEbGdrcN5Y29ycA +xref: UMLS:C0015965 {source="ncithesaurus:Fetus"} +is_a: UBERON:0000922 ! embryo +intersection_of: UBERON:0000922 ! embryo +intersection_of: existence_starts_and_ends_during UBERON:0007220 ! late embryonic stage +relationship: existence_starts_and_ends_during UBERON:0007220 ! late embryonic stage + +[Term] +id: UBERON:0000325 +name: gastric gland +def: "The branched tubular glands found in the mucosa of the fundus and body of the stomach which contain parietal cells that secrete hydrochloric acid and zymogenic cells that produce pepsin." [MGI:anna] +subset: organ_slim +subset: pheno_slim +xref: BTO:0000503 +xref: EMAPA:27181 +xref: FMA:14919 +is_a: UBERON:0002365 {source="cjm"} ! exocrine gland +is_a: UBERON:0003294 ! gland of foregut +relationship: part_of UBERON:0006924 {source="ISBN:0073040584"} ! stomach glandular epithelium + +[Term] +id: UBERON:0000326 +name: pancreatic juice +def: "Pancreatic juice is slightly alkaline and contains numerous enzymes and inactive enzyme precursors including alpha-amylase, chymotrypsinogen, lipase, procarboxypeptidase, proelastase, prophospholipase A2, ribonuclease, and trypsinogen. Its high concentration of bicarbonate ions helps to neutralize the acid from the stomach." [GO:0030157] +synonym: "pancreatic fluid" RELATED [] +synonym: "pancreatic secretion" RELATED [] +synonym: "succus pancreaticus" RELATED [BTO:0000504] +xref: BTO:0000504 +xref: CALOHA:TS-2235 +xref: FMA:62973 +xref: GAID:1166 +xref: MESH:D010189 +is_a: UBERON:0000456 ! secretion of exocrine gland +intersection_of: UBERON:0000456 ! secretion of exocrine gland +intersection_of: produced_by UBERON:0001264 ! pancreas +relationship: produced_by UBERON:0001264 ! pancreas + +[Term] +id: UBERON:0000328 +name: gut wall +def: "The wall of the digestive tract. This encompasses all parts of the digestive tract with the exception of the lumen (cavity)." [http://orcid.org/0000-0002-6601-2165] +synonym: "digestive tract wall" EXACT [] +synonym: "wall of alimentary tract" RELATED [] +synonym: "wall of digestive tract" EXACT [] +synonym: "wall of gut" EXACT [FMA:45653] +xref: BTO:0000547 +xref: FMA:45653 +is_a: UBERON:0000060 ! anatomical wall +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0001555 ! digestive tract +relationship: part_of UBERON:0001555 ! digestive tract + +[Term] +id: UBERON:0000329 +name: hair root +def: "The enlarged basal part of a hair within the skin[BTO]. The root of the hair ends in an enlargement, the hair bulb, which is whiter in color and softer in texture than the shaft, and is lodged in a follicular involution of the epidermis called the hair follicle. [Wikipedia]." [BTO:0000555, http://en.wikipedia.org/wiki/Hair_root] +synonym: "root of hair" EXACT [FMA:70730] +xref: BTO:0000555 +xref: CALOHA:TS-0433 +xref: FMA:70730 +xref: Hair:root +xref: http://linkedlifedata.com/resource/umls/id/C1182707 +xref: NCIT:C32707 +xref: NCIT:C32711 +xref: UMLS:C1182707 {source="ncithesaurus:Hair_Root"} +is_a: UBERON:0000021 ! cutaneous appendage +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001037 ! strand of hair + +[Term] +id: UBERON:0000331 +name: ileal mucosa +def: "A mucosa that is part of a ileum [Automatically generated definition]." [OBOL:automatic] +synonym: "ileal mucous membrane" EXACT [FMA:14956] +synonym: "ileum mucosa" EXACT [FMA:14956] +synonym: "ileum mucosa" EXACT [OBOL:automatic] +synonym: "ileum mucosa of organ" EXACT [OBOL:automatic] +synonym: "ileum mucous membrane" EXACT [OBOL:automatic] +synonym: "ileum organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of ileum" EXACT [OBOL:automatic] +synonym: "mucosa of organ of ileum" EXACT [OBOL:automatic] +synonym: "mucous membrane of ileum" EXACT [OBOL:automatic] +synonym: "organ mucosa of ileum" EXACT [OBOL:automatic] +xref: BTO:0000619 +xref: CALOHA:TS-0470 +xref: EMAPA:35424 +xref: FMA:14956 +xref: http://www.snomedbrowser.com/Codes/Details/85458007 +xref: MA:0003216 +is_a: UBERON:0001204 ! mucosa of small intestine +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0002116 ! ileum +relationship: part_of UBERON:0002116 ! ileum + +[Term] +id: UBERON:0000332 +name: yellow bone marrow +def: "bone marrow in which the fat cells predominate in the meshes of the reticular network." [http://medical-dictionary.thefreedictionary.com/Yellow+Marrow] +synonym: "fat marrow" RELATED [BTO:0000635] +synonym: "medulla ossium flava" EXACT LATIN [BTO:0000635] +synonym: "yellow marrow" EXACT [BTO:0000635] +xref: BTO:0000635 +xref: FMA:74596 +xref: http://www.snomedbrowser.com/Codes/Details/328639002 +xref: http://www.snomedbrowser.com/Codes/Details/5023006 +is_a: UBERON:0002371 ! bone marrow +relationship: part_of UBERON:0007195 ! stroma of bone marrow + +[Term] +id: UBERON:0000333 +name: intestinal gland +def: "A gland that is part of the intestinal mucosa. Examples include the intestinal crypts, duodenal gland[cjm]." [https://orcid.org/0000-0002-6601-2165] +subset: organ_slim +synonym: "bowel mucosa gland" EXACT [OBOL:automatic] +synonym: "bowel mucosa of organ gland" EXACT [OBOL:automatic] +synonym: "bowel mucous membrane gland" EXACT [OBOL:automatic] +synonym: "bowel organ mucosa gland" EXACT [OBOL:automatic] +synonym: "gland of bowel mucosa" EXACT [OBOL:automatic] +synonym: "gland of bowel mucosa of organ" EXACT [OBOL:automatic] +synonym: "gland of bowel mucous membrane" EXACT [OBOL:automatic] +synonym: "gland of bowel organ mucosa" EXACT [OBOL:automatic] +synonym: "gland of intestinal mucosa" EXACT [OBOL:automatic] +synonym: "gland of intestine mucosa" EXACT [OBOL:automatic] +synonym: "gland of intestine mucosa of organ" EXACT [OBOL:automatic] +synonym: "gland of intestine mucous membrane" EXACT [OBOL:automatic] +synonym: "gland of intestine organ mucosa" EXACT [OBOL:automatic] +synonym: "gland of mucosa of bowel" EXACT [OBOL:automatic] +synonym: "gland of mucosa of intestine" EXACT [OBOL:automatic] +synonym: "gland of mucosa of organ of bowel" EXACT [OBOL:automatic] +synonym: "gland of mucosa of organ of intestine" EXACT [OBOL:automatic] +synonym: "gland of mucous membrane of bowel" EXACT [OBOL:automatic] +synonym: "gland of mucous membrane of intestine" EXACT [OBOL:automatic] +synonym: "gland of organ mucosa of bowel" EXACT [OBOL:automatic] +synonym: "gland of organ mucosa of intestine" EXACT [OBOL:automatic] +synonym: "glandula intestinalis" EXACT [FMA:15052] +synonym: "glandulae intestinales" RELATED [] +synonym: "intestinal mucosa gland" EXACT [OBOL:automatic] +synonym: "intestine mucosa gland" EXACT [OBOL:automatic] +synonym: "intestine mucosa of organ gland" EXACT [OBOL:automatic] +synonym: "intestine mucous membrane gland" EXACT [OBOL:automatic] +synonym: "intestine organ mucosa gland" EXACT [OBOL:automatic] +synonym: "mucosa of bowel gland" EXACT [OBOL:automatic] +synonym: "mucosa of intestine gland" EXACT [OBOL:automatic] +synonym: "mucosa of organ of bowel gland" EXACT [OBOL:automatic] +synonym: "mucosa of organ of intestine gland" EXACT [OBOL:automatic] +synonym: "mucous membrane of bowel gland" EXACT [OBOL:automatic] +synonym: "mucous membrane of intestine gland" EXACT [OBOL:automatic] +synonym: "organ mucosa of bowel gland" EXACT [OBOL:automatic] +synonym: "organ mucosa of intestine gland" EXACT [OBOL:automatic] +xref: BTO:0000640 +xref: FMA:15052 +xref: http://www.snomedbrowser.com/Codes/Details/266297002 +is_a: UBERON:0003408 ! gland of digestive tract +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0001242 ! intestinal mucosa +relationship: part_of UBERON:0001242 ! intestinal mucosa + +[Term] +id: UBERON:0000341 +name: throat +def: "In anatomy, the throat is the anterior part of the neck, in front of the vertebral column. It consists of the pharynx and larynx. An important feature of the throat is the epiglottis, a flap which separates the esophagus from the trachea and prevents inhalation of food or drink. The throat contains various blood vessels, various pharyngeal muscles, the trachea (windpipe) and the esophagus. The hyoid bone and the clavicle are the only bones located in the throat of mammals. It is sometimes considered a synonym for fauces. [WP,unvetted]." [http://en.wikipedia.org/wiki/Throat] +subset: pheno_slim +synonym: "gula" RELATED LATIN [] +xref: BTO:0000828 +xref: EMAPA:37973 {source="MA:th"} +xref: FMA:228738 +xref: http://en.wikipedia.org/wiki/Throat +xref: http://linkedlifedata.com/resource/umls/id/C0230069 +xref: NCIT:C54272 +xref: OpenCyc:Mx4rwQtO_JwpEbGdrcN5Y29ycA +xref: UMLS:C0230069 {source="ncithesaurus:Throat"} +is_a: UBERON:0034929 ! external soft tissue zone +relationship: part_of UBERON:0000974 ! neck + +[Term] +id: UBERON:0000344 +name: mucosa +def: "A lining of mostly endodermal origin, covered in epithelium, which is involved in absorption and secretion. They line various body cavities that are exposed to the external environment and internal organs. It is at several places continuous with skin: at the nostrils, the lips, the ears, the genital area, and the anus. The sticky, thick fluid secreted by the mucous membranes and gland is termed mucus. The term mucous membrane refers to where they are found in the body and not every mucous membrane secretes mucus[WP]" [http://en.wikipedia.org/wiki/Mucous_membrane] +subset: pheno_slim +synonym: "mucosa of organ" EXACT [FMA:85355] +synonym: "mucosa of organ part" EXACT [FMA:85358] +synonym: "mucosal region" EXACT [FMA:85358] +synonym: "mucous membrane" EXACT [FMA:85355] +synonym: "organ mucosa" EXACT [FMA:85355] +synonym: "region of mucosa" RELATED [FMA:85358] +synonym: "tunica mucosa" RELATED LATIN [http://en.wikipedia.org/wiki/Mucous_membrane] +synonym: "tunica mucosa" RELATED [BTO:0000886] +xref: AEO:0000199 +xref: BTO:0000886 +xref: CALOHA:TS-2031 +xref: EHDAA2_RETIRED:0003234 +xref: EV:0100382 +xref: FMA:85355 +xref: FMA:85358 +xref: GAID:297 +xref: galen:Mucosa +xref: http://linkedlifedata.com/resource/umls/id/C0026724 +xref: http://www.snomedbrowser.com/Codes/Details/361693009 +xref: MESH:D009092 +xref: Mucous:membrane +xref: NCIT:C13166 +xref: OpenCyc:Mx4rvmKNOpwpEbGdrcN5Y29ycA +xref: UMLS:C0026724 {source="ncithesaurus:Mucosa"} +is_a: UBERON:0004923 ! organ component layer +relationship: has_part UBERON:0000483 ! epithelium +relationship: has_part UBERON:0002384 ! connective tissue + +[Term] +id: UBERON:0000345 +name: myelin +def: "A dielectric (electrically insulating) material consisting of protein and fat that forms a layer, the myelin sheath, usually around only the axon of a neuron. Myelin is about 40 % water; the dry mass of myelin is about 70 - 85 % lipids and about 15 - 30 % proteins. Some of the proteins that make up myelin are myelin basic protein (MBP), myelin oligodendrocyte glycoprotein (MOG), and proteolipid protein (PLP). The primary lipid of myelin is a glycolipid called galactocerebroside (GalC). The intertwining hydrocarbon chains of sphingomyelin serve to strengthen the myelin sheath." [http://en.wikipedia.org/wiki/Myelin] +subset: pheno_slim +xref: BTO:0000894 +xref: FMA:62977 +xref: http://en.wikipedia.org/wiki/Myelin +xref: ncithesaurus:Myelin +is_a: UBERON:0000061 ! anatomical structure +relationship: part_of UBERON:0001016 ! nervous system +relationship: present_in_taxon NCBITaxon:6340 {source="http://www1.pbrc.hawaii.edu/~danh/MyelinEvolution/evolution.html"} +relationship: present_in_taxon NCBITaxon:6681 {source="http://www1.pbrc.hawaii.edu/~danh/MyelinEvolution/evolution.html"} +relationship: present_in_taxon NCBITaxon:7742 {source="http://www1.pbrc.hawaii.edu/~danh/MyelinEvolution/evolution.html"} + +[Term] +id: UBERON:0000346 +name: obsolete myelin membrane +synonym: "myelinated plasma membrane of Schwann cell" EXACT [FMA:73417] +is_obsolete: true +consider: BTO:0000895 +consider: FMA:73417 + +[Term] +id: UBERON:0000347 +name: entire myelin sheath +def: "The insulating envelope that surrounds nerve fibers or axons." [MP:0003871] +subset: pheno_slim +synonym: "medullary sheath" RELATED [BTO:0000900] +xref: BTO:0000900 +xref: CALOHA:TS-2363 +xref: FMA:62983 +xref: GAID:731 +xref: GO:0043209 +xref: http://linkedlifedata.com/resource/umls/id/C0026973 +xref: MESH:D009186 +xref: NCIT:C13261 +xref: UMLS:C0026973 {source="ncithesaurus:Myelin_Sheath"} +is_a: UBERON:0005162 ! multi cell part structure +relationship: has_part UBERON:0000345 ! myelin + +[Term] +id: UBERON:0000348 +name: ophthalmic nerve +def: "The sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the orbit and its contents, the nasal cavity and the skin of the nose and forehead." [http://en.wikipedia.org/wiki/Ophthalmic_nerve, MP:0009798] +comment: Terminology notes. This nerve is known by a ridiculous number of names[http://palaeos.com/vertebrates/glossary/glossaryPo.html] +subset: pheno_slim +synonym: "ciliary nerve" RELATED [http://palaeos.com/vertebrates/glossary/glossaryPo.html] +synonym: "cranial nerve V, branch V1" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "ethmoidal nerve" RELATED [http://en.wikipedia.org/wiki/Ophthalmic_nerve] +synonym: "first branch of fifth cranial nerve" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "first division of fifth cranial nerve" EXACT [FMA:52621] +synonym: "first division of trigeminal nerve" EXACT [FMA:52621] +synonym: "nervus ophthalmicus (V1)" EXACT [FMA:52621] +synonym: "nervus ophthalmicus (Va)" EXACT [FMA:52621] +synonym: "nervus ophthalmicus [v1]" EXACT LATIN [FMA:52621, FMA:TA] +synonym: "nervus ophthalmicus [va]" EXACT LATIN [FMA:52621, FMA:TA] +synonym: "ophthalmic division" RELATED [BTO:0000926] +synonym: "ophthalmic division" RELATED [http://en.wikipedia.org/wiki/Ophthalmic_nerve] +synonym: "ophthalmic division [V1]" EXACT [FMA:52621] +synonym: "ophthalmic division [Va]" EXACT [FMA:52621] +synonym: "ophthalmic division of fifth cranial nerve" EXACT [FMA:52621] +synonym: "ophthalmic division of trigeminal nerve (V1)" EXACT [FMA:52621] +synonym: "ophthalmic division of trigeminal nerve (Va)" EXACT [FMA:52621] +synonym: "ophthalmic nerve [V1]" EXACT [FMA:52621] +synonym: "ophthalmic nerve [Va]" EXACT [FMA:52621] +synonym: "opthalmic nerve" EXACT [http://en.wikipedia.org/wiki/Ophthalmic_nerve] +synonym: "profundal nerve" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "profundus" RELATED [http://palaeos.com/vertebrates/glossary/glossaryPo.html] +synonym: "profundus nerve" RELATED [http://palaeos.com/vertebrates/glossary/glossaryPo.html] +synonym: "ramus opthalmicus profundus (ramus V1)" EXACT [AAO:0010648] +synonym: "rostral branch of trigeminal nerve" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "trigeminal nerve ophthalmic division" RELATED [EMAPA:17800] +synonym: "trigeminal V nerve ophthalmic division" EXACT [MA:0001104] +xref: AAO:0010648 +xref: BTO:0000926 +xref: EHDAA2:0002088 +xref: EHDAA:3744 +xref: EMAPA:17800 +xref: FMA:52621 +xref: GAID:837 +xref: http://linkedlifedata.com/resource/umls/id/C0029082 +xref: http://www.snomedbrowser.com/Codes/Details/280210000 +xref: MA:0001104 +xref: MESH:D009882 +xref: NCIT:C33215 +xref: OpenCyc:Mx4rwEs_K5wpEbGdrcN5Y29ycA +xref: Ophthalmic:nerve +xref: UMLS:C0029082 {source="ncithesaurus:Ophthalmic_Nerve"} +xref: VHOG:0001349 +is_a: UBERON:0011779 ! nerve of head region +relationship: branching_part_of UBERON:0001645 {notes="may be a distinct nerve in teleosts", source="multiple"} ! trigeminal nerve +relationship: develops_from UBERON:0035597 ! profundal placode +relationship: innervates UBERON:1000021 ! skin of face +relationship: part_of UBERON:0001645 ! trigeminal nerve + +[Term] +id: UBERON:0000349 +name: limbic system +def: "A set of midline structures surrounding the brainstem of the mammalian brain, originally described anatomically, e.g., hippocampal formation, amygdala, hypothalamus, cingulate cortex. Although the original designation was anatomical, the limbic system has come to be associated with the system in the brain subserving emotional functions. As such, it is very poorly defined and doesn't correspond closely to the anatomical meaning any longer. [BirnLex]." [BIRNLEX:Limbic_system, http://en.wikipedia.org/wiki/Limbic_system] +comment: includes the hippocampus, amygdala, anterior thalamic nuclei, and limbic cortex, which support a variety of functions including emotion, behavior, long term memory, and olfaction [Wikipedia] +subset: non_informative +subset: pheno_slim +synonym: "visceral brain" RELATED [ISBN:0123813611] +xref: BTO:0000928 +xref: CALOHA:TS-1307 +xref: FMA:242000 +xref: GAID:615 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2055 +xref: http://linkedlifedata.com/resource/umls/id/C0023715 +xref: http://www.snomedbrowser.com/Codes/Details/361342009 +xref: Limbic:system +xref: MESH:A08.186.211.577 +xref: NCIT:C94541 +xref: OpenCyc:Mx4rwAeba5wpEbGdrcN5Y29ycA +xref: UMLS:C0023715 {source="ncithesaurus:Limbic_System"} +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0011216 ! organ system subdivision +relationship: part_of UBERON:0001890 ! forebrain + +[Term] +id: UBERON:0000351 +name: nuchal ligament +def: "A fibrous membrane, which, in the neck, represents the supraspinal ligaments of the upper vertebrae." [http://en.wikipedia.org/wiki/Nuchal_ligament] +synonym: "ligament of neck" EXACT [FMA:13427] +synonym: "ligamentum nuchae" EXACT LATIN [FMA:13427] +synonym: "paddywhack" NARROW [http://en.wikipedia.org/wiki/Paddywhack, NCBITaxon:9895] +synonym: "paxwax" RELATED [] +xref: BTO:0000952 +xref: EMAPA:19207 +xref: FMA:13427 +xref: http://www.snomedbrowser.com/Codes/Details/166962007 +xref: Nuchal:ligament +is_a: UBERON:0005174 ! dorsal region element +is_a: UBERON:0008846 ! skeletal ligament +relationship: attaches_to UBERON:0001676 ! occipital bone +relationship: attaches_to UBERON:0002413 {notes="C7 in humans"} ! cervical vertebra +relationship: part_of UBERON:0012477 {source="BTO"} ! dorsal part of neck +relationship: present_in_taxon NCBITaxon:9606 +relationship: present_in_taxon NCBITaxon:9608 +relationship: present_in_taxon NCBITaxon:9788 +relationship: present_in_taxon NCBITaxon:9895 + +[Term] +id: UBERON:0000353 +name: parenchyma +def: "functional part of an organ in the body. This is in contrast to the stroma, which refers to the structural tissue of organs, being exactly, connective tissues." [http://en.wikipedia.org/wiki/Parenchyma] +xref: EHDAA:3015 +xref: EHDAA:3905 +xref: EHDAA:3999 +xref: EHDAA:4005 +xref: EHDAA:6899 +xref: EHDAA:6903 +xref: EHDAA:6994 +xref: EHDAA:8086 +xref: EHDAA:9182 +xref: EHDAA:9190 +xref: EHDAA:9196 +xref: EHDAA:9202 +xref: FMA:45732 +xref: http://en.wikipedia.org/wiki/Parenchyma +xref: http://linkedlifedata.com/resource/umls/id/C0933845 +xref: NCIT:C74601 +xref: UMLS:C0933845 {source="ncithesaurus:Parenchyma"} +is_a: UBERON:0000064 ! organ part +disjoint_from: UBERON:0003891 ! stroma + +[Term] +id: UBERON:0000355 +name: pharyngeal mucosa +alt_id: UBERON:0003344 +def: "A mucosa that is part of a pharynx [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of organ of pharynx" EXACT [OBOL:automatic] +synonym: "mucosa of pharynx" EXACT [OBOL:automatic] +synonym: "mucous membrane of pharynx" EXACT [OBOL:automatic] +synonym: "mucous membrane of pharynx" EXACT [FMA:55031] +synonym: "mucous membrane of the pharynx" RELATED [BTO:0001047] +synonym: "organ mucosa of pharynx" EXACT [OBOL:automatic] +synonym: "pharynx mucosa" EXACT [OBOL:automatic] +synonym: "pharynx mucosa of organ" EXACT [OBOL:automatic] +synonym: "pharynx mucous membrane" EXACT [OBOL:automatic] +synonym: "pharynx organ mucosa" EXACT [OBOL:automatic] +synonym: "tunica mucosa pharyngea" EXACT LATIN [FMA:55031, FMA:TA] +synonym: "tunica mucosa pharyngis" EXACT [] +xref: BTO:0001047 +xref: EMAPA:26957 +xref: FMA:55031 +xref: http://www.snomedbrowser.com/Codes/Details/362121003 +xref: MA:0003143 +is_a: UBERON:0004785 ! respiratory system mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001042 ! chordate pharynx +relationship: part_of UBERON:0001042 ! chordate pharynx + +[Term] +id: UBERON:0000358 +name: blastocyst +def: "The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm[GO]." [GO:0001824, http://en.wikipedia.org/wiki/Blastocyst] +subset: efo_slim +synonym: "blastocystis" RELATED LATIN [http://en.wikipedia.org/wiki/Blastocyst] +synonym: "blastula" RELATED [FMA:83041] +xref: BTO:0001099 +xref: CALOHA:TS-0076 +xref: EFO:0000295 +xref: EMAPA:36035 +xref: EV:0100394 +xref: FMA:83041 +xref: GAID:1153 +xref: http://en.wikipedia.org/wiki/Blastocyst +xref: http://linkedlifedata.com/resource/umls/id/C1281743 +xref: http://www.snomedbrowser.com/Codes/Details/308837009 +xref: MESH:A16.254.085 +xref: NCIT:C13739 +xref: UMLS:C1281743 {source="ncithesaurus:Blastocyst"} +is_a: UBERON:0002050 ! embryonic structure +relationship: develops_from UBERON:0000085 ! morula +relationship: existence_starts_and_ends_during UBERON:0000108 ! blastula stage +relationship: has_part UBERON:0000087 ! inner cell mass +relationship: has_part UBERON:0000088 ! trophoblast +relationship: part_of UBERON:0000307 ! blastula + +[Term] +id: UBERON:0000359 +name: preputial gland +def: "A aired, lobulated, modified sebaceous glands located in the inguinal region adjacent to the penis and vagina, with pheromonal functions in male rodents; in males, the preputial gland empties into the preputial cavity and in females, the preputial (aka clitoral) gland duct empties into the clitoral fossa." [MP:0013329] +subset: organ_slim +subset: pheno_slim +synonym: "clitoral/preputial gland" RELATED [MA:0003044] +synonym: "glandulae preputiales" EXACT LATIN [FMA:71652, FMA:TA] +synonym: "preputial glands" EXACT [FMA:71652] +synonym: "preputial glands set" EXACT [FMA:71652] +xref: CALOHA:TS-0824 +xref: EMAPA:35701 +xref: http://linkedlifedata.com/resource/umls/id/C1947929 +xref: http://www.snomedbrowser.com/Codes/Details/278916008 +xref: MA:0003044 +xref: NCIT:C22174 +xref: Preputial:gland +xref: UMLS:C1947929 {source="ncithesaurus:Prepucial_Gland_MMHCC"} +is_a: UBERON:0003937 ! reproductive gland +is_a: UBERON:0015251 {source="ISBN:0123813611", source="MA"} ! modified sebaceous gland +relationship: fma_set_term FMA:71652 + +[Term] +id: UBERON:0000360 +name: obsolete rectal gland +is_obsolete: true +consider: UBERON:0004757 +consider: UBERON:0004758 +consider: UBERON:0004759 +consider: UBERON:0004760 + +[Term] +id: UBERON:0000361 +name: red bone marrow +def: "The red vascular substance consisting of connective tissue and blood vessels, containing primitive blood cells, macrophages, megakaryocytes, and fat cells. Red marrow is found in the cavities of many bones. It manufactures and releases leukocytes and erythrocytes into the bloodstream." [http://medical-dictionary.thefreedictionary.com/red+marrow] +synonym: "medulla ossium rubra" EXACT LATIN [BTO:0001160] +synonym: "parenchyma of none marrow marrow" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "parenchymal red marrow" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "red marrow" EXACT [BTO:0001160] +xref: BTO:0001160 +xref: FMA:74595 +xref: http://www.snomedbrowser.com/Codes/Details/328538003 +xref: http://www.snomedbrowser.com/Codes/Details/75330005 +is_a: UBERON:0002371 ! bone marrow +relationship: part_of UBERON:0012429 ! hematopoietic tissue + +[Term] +id: UBERON:0000362 +name: renal medulla +def: "the inner portion of the kidney consisting of the renal pyramids" [ISBN:0-683-40008-8, MGI:smb, MP:0003014] +subset: pheno_slim +synonym: "kidney medulla" EXACT [OBOL:automatic] +synonym: "medulla of kidney" EXACT [OBOL:automatic] +synonym: "medulla renalis" EXACT LATIN [FMA:74268, FMA:TA] +synonym: "medullary pyramids" RELATED PLURAL [FMA:74268] +synonym: "pyramides renales" EXACT LATIN [FMA:74268, FMA:TA] +synonym: "renal marrow" RELATED [BTO:0001167] +synonym: "renal medullae" EXACT PLURAL [FMA:86327] +synonym: "renal medullae set" EXACT PLURAL [FMA:86327] +synonym: "renal pyramids" EXACT PLURAL [FMA:74268] +synonym: "renal pyramids set" EXACT PLURAL [FMA:74268] +xref: BTO:0001167 +xref: CALOHA:TS-1157 +xref: EMAPA:19279 +xref: GAID:425 +xref: galen:MedullaOfKidney +xref: http://linkedlifedata.com/resource/umls/id/C0022664 +xref: http://www.snomedbrowser.com/Codes/Details/30737000 +xref: MA:0000373 +xref: MESH:D007679 +xref: NCIT:C12740 +xref: Renal:medulla +xref: UMLS:C0022664 {source="ncithesaurus:Renal_Medulla"} +is_a: UBERON:0000958 ! medulla of organ +intersection_of: UBERON:0000958 ! medulla of organ +intersection_of: part_of UBERON:0002113 ! kidney +relationship: contributes_to_morphology_of UBERON:0002113 ! kidney +relationship: has_part UBERON:0004200 ! kidney pyramid +relationship: part_of UBERON:0002113 ! kidney + +[Term] +id: UBERON:0000363 +name: reticuloendothelial system +def: "A part of the immune system that consists of the phagocytic cells located in reticular connective tissue. The cells are primarily monocytes and macrophages, and they accumulate in lymph nodes and the spleen. The Kupffer cells of the liver and tissue histiocytes are also part of the RES[WP]." [http://en.wikipedia.org/wiki/Reticuloendothelial_system] +synonym: "lymphoreticular" RELATED [BioMart:BioMart] +synonym: "lymphoreticular system" EXACT [http://en.wikipedia.org/wiki/Reticuloendothelial_system] +synonym: "mononuclear phagocyte system" EXACT [FMA:84189] +synonym: "RES" EXACT [http://en.wikipedia.org/wiki/Reticuloendothelial_system] +synonym: "reticuloendothelial system" EXACT [FMA:84189] +xref: BTO:0001174 +xref: EV:0100048 +xref: FMA:84189 +xref: GAID:1004 +xref: http://linkedlifedata.com/resource/umls/id/C0035287 +xref: http://www.snomedbrowser.com/Codes/Details/278874002 +xref: MESH:D012157 +xref: NCIT:C12780 +xref: Reticuloendothelial:system +xref: UMLS:C0035287 {source="ncithesaurus:Reticuloendothelial_System"} +is_a: UBERON:0000061 ! anatomical structure +relationship: part_of UBERON:0002405 ! immune system +relationship: part_of UBERON:0006804 ! reticular tissue + +[Term] +id: UBERON:0000364 +name: obsolete rootlet +synonym: "fila radicularia" EXACT LATIN [FMA:76787, FMA:TA] +synonym: "Rootlets" EXACT [FMA:76787] +synonym: "Rootlets set" EXACT [FMA:76787] +xref: BTO:0001192 +is_obsolete: true +consider: FMA:76787 + +[Term] +id: UBERON:0000365 +name: urothelium +def: "An epithelial tissue layer that lines much of the urinary tract, including the renal pelvis, the ureters, the bladder, and parts of the urethra." [http://en.wikipedia.org/wiki/Urothelium, https://github.com/obophenotype/uberon/issues/92] +subset: pheno_slim +synonym: "epithelium transitionale" EXACT [FMA:63914] +synonym: "transitional epithelium" BROAD INCONSISTENT [] +synonym: "transitional epithelium" EXACT [FMA:63914, https://github.com/obophenotype/uberon/issues/92] +synonym: "uroepithelium" EXACT [FMA:67695] +xref: BTO:0003906 +xref: CALOHA:TS-1096 +xref: EMAPA:37978 {source="MA:th"} +xref: FMA:63914 +xref: FMA:67695 +xref: GAID:935 +xref: http://en.wikipedia.org/wiki/Urothelium +xref: http://linkedlifedata.com/resource/umls/id/C0225339 +xref: http://linkedlifedata.com/resource/umls/id/C0227598 +xref: http://www.snomedbrowser.com/Codes/Details/30117005 +xref: http://www.snomedbrowser.com/Codes/Details/57789003 +xref: MESH:D019459 +xref: NCIT:C12884 +xref: NCIT:C13318 +xref: Transitional:epithelium +xref: UMLS:C0225339 {source="ncithesaurus:Transitional_Epithelium"} +xref: UMLS:C0227598 {source="ncithesaurus:Urothelium"} +is_a: UBERON:0000486 ! multilaminar epithelium +is_a: UBERON:0005911 ! endo-epithelium +relationship: part_of UBERON:0001008 ! renal system + +[Term] +id: UBERON:0000366 +name: flexor muscle +def: "a skeletal muscle whose contraction bends a joint." [http://www.thefreedictionary.com/flexor+muscle, https://github.com/obophenotype/uberon/issues/57] +subset: pheno_slim +subset: vertebrate_core +synonym: "flexor" RELATED [] +xref: BTO:0001257 +xref: FMA:74559 +xref: FMA:74999 +xref: TAO:0005271 +xref: ZFA:0005271 +is_a: UBERON:0014892 ! skeletal muscle organ +property_value: dc-contributor https://github.com/cmungall +relationship: develops_from UBERON:0010977 ! flexor pre-muscle mass +relationship: part_of UBERON:0000026 ! appendage + +[Term] +id: UBERON:0000368 +name: adductor brevis +def: "The adductor brevis is a muscle in the thigh situated immediately behind the pectineus and adductor longus. It is somewhat triangular in form, and arises by a narrow origin from the outer surfaces of the superior and inferior rami of the pubis, between the gracilis and obturator externus. Its fibers, passing backward, lateralward, and downward, are inserted, by an aponeurosis, into the line leading from the lesser trochanter to the linea aspera and into the upper part of the linea aspera, immediately behind the pectineus and upper part of the adductor longus.[WP]." [http://en.wikipedia.org/wiki/Adductor_brevis_muscle] +synonym: "adductor brevis muscle" EXACT [] +synonym: "musculus adductos brevis" EXACT [FMA:22442] +xref: BTO:0001288 +xref: EMAPA:36219 +xref: FMA:22442 +xref: http://en.wikipedia.org/wiki/Adductor_brevis_muscle +xref: http://www.snomedbrowser.com/Codes/Details/181687007 +xref: OpenCyc:Mx4rv13lfJwpEbGdrcN5Y29ycA +is_a: UBERON:0004252 ! hindlimb stylopod muscle +is_a: UBERON:0011144 {source="Wikipedia"} ! adductor muscle of hip +relationship: has_muscle_insertion UBERON:0002504 {notes="the lesser trochanter and linea aspera of the femur", source="dbpedia"} ! lesser trochanter +relationship: has_muscle_origin UBERON:0001275 {notes="anterior surface of the inferior ramus and body of the pubis", source="dbpedia"} ! pubis + +[Term] +id: UBERON:0000369 +name: corpus striatum +alt_id: UBERON:0010082 +def: "The corpus striatum (striated body) is a compound structure consisting of the caudate nucleus and the lentiform nucleus, which consists of the putamen and the globus pallidus[WP]." [http://en.wikipedia.org/wiki/Corpus_striatum] +comment: * According to the 1917 version of Gray's Anatomy, it is the combination of the lentiform nucleus (also known as the lenticular nucleus) and the caudate nucleus * According to BrainInfo it is a part of the basal ganglia comprising the globus pallidus and striatum +subset: efo_slim +synonym: "striate body" RELATED [BTO:0001311] +synonym: "striated body" RELATED [BTO:0001311] +xref: BAMS:CSTR +xref: BTO:0001311 +xref: CALOHA:TS-0183 +xref: Corpus:striatum +xref: EFO:0000381 +xref: EHDAA2:0000596 +xref: EMAPA:17549 +xref: EV:0100184 +xref: FMA:77616 +xref: GAID:667 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2339 +xref: http://linkedlifedata.com/resource/umls/id/C0010097 +xref: http://www.snomedbrowser.com/Codes/Details/279318005 +xref: MESH:A08.186.211.730.885.105.487 +xref: NCIT:C12448 +xref: UMLS:C0010097 {source="ncithesaurus:Corpus_Striatum"} +xref: VHOG:0001175 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0002420 {source="MA"} ! basal ganglion + +[Term] +id: UBERON:0000370 +name: adductor magnus +def: "An adductor muscle that attaches to the pelvic bone and the femur. In humans, the adductor magnus is a large triangular muscle, situated on the medial side of the thigh. The portion which arises from the ischiopubic ramus (a small part of the inferior ramus of the pubis, and the inferior ramus of the ischium) is called the 'adductor magnesius portion', and the portion arising from the tuberosity of the ischium is called the 'hamstring portion'. The hamstring portion is not considered part of the hamstring group of muscles, but it is adjacent to it.[WP,generalized]." [http://en.wikipedia.org/wiki/Adductor_magnus_muscle] +synonym: "adductor magnus muscle" EXACT [] +synonym: "musculus adductor magnus" RELATED LATIN [http://en.wikipedia.org/wiki/Adductor_magnus_muscle] +xref: AAO:0010040 +xref: BTO:0001312 +xref: EMAPA:36221 +xref: FMA:22443 +xref: galen:AdductorMagnus +xref: http://en.wikipedia.org/wiki/Adductor_magnus_muscle +xref: http://www.snomedbrowser.com/Codes/Details/181688002 +xref: OpenCyc:Mx4rvuSd6JwpEbGdrcN5Y29ycA +is_a: UBERON:0004252 ! hindlimb stylopod muscle +is_a: UBERON:0011144 {source="Wikipedia"} ! adductor muscle of hip +relationship: has_muscle_insertion UBERON:0000981 {source="dbpedia"} ! femur +relationship: has_muscle_origin UBERON:0001275 {notes="tuberosity of the ischium", source="dbpedia"} ! pubis +relationship: innervated_by UBERON:0001322 {notes="posterior branch of obturator nerve and sciatic nerve", source="dbpedia"} ! sciatic nerve + +[Term] +id: UBERON:0000371 +name: syncytiotrophoblast +def: "extraembryonic cells of trophoblastic shell surrounding embryo, outside the cytotrophoblast layer, involved with implantation of the blastocyst by eroding extracellular matrix surrounding maternal endometrial cells at site of implantation, also contribute to villi. (dark staining, multinucleated)." [http://embryology.med.unsw.edu.au/Notes/placenta5.htm, http://en.wikipedia.org/wiki/Syncytiotrophoblast] +synonym: "syncitiotrophoblast" RELATED [] +synonym: "syncitiotrophoblastus" RELATED LATIN [http://en.wikipedia.org/wiki/Syncytiotrophoblast] +synonym: "syncytial trophoblast" EXACT [FMA:83040] +synonym: "syntrophoblast" RELATED [] +synonym: "syntrophoblast layer" EXACT [ISBN:0073040584] +xref: BTO:0001335 +xref: EHDAA:129 +xref: EHDAA:91 +xref: EMAPA:16068 +xref: FMA:83040 +xref: http://en.wikipedia.org/wiki/Syncytiotrophoblast +xref: http://linkedlifedata.com/resource/umls/id/C1135936 +xref: http://www.snomedbrowser.com/Codes/Details/256965005 +xref: NCIT:C33918 +xref: UMLS:C1135936 {source="ncithesaurus:Syncytiotrophoblast"} +is_a: UBERON:0002050 {source="FMA"} ! embryonic structure +relationship: part_of UBERON:0004364 {source="EMAPA"} ! ectoplacental cone + +[Term] +id: UBERON:0000372 +name: extensor digitorum brevis pes +def: "A muscle on the upper surface of the foot that helps extend digits 2 through 4." [http://en.wikipedia.org/wiki/Extensor_digitorum_brevis_muscle] +synonym: "extensor digitorum brevis" EXACT [FMA:51140] +synonym: "extensor digitorum brevis muscle" EXACT [] +synonym: "musculus extensor digitorum brevis" RELATED LATIN [http://en.wikipedia.org/wiki/Extensor_digitorum_brevis_muscle] +xref: BTO:0001337 +xref: EMAPA:36258 +xref: FMA:51140 +xref: http://en.wikipedia.org/wiki/Extensor_digitorum_brevis_muscle +is_a: UBERON:0000311 ! extensor muscle +is_a: UBERON:0001498 ! muscle of pes +relationship: has_muscle_insertion UBERON:0003221 {notes="proximal dorsal region of middle phalanges 2 3 and 4", source="dbpedia"} ! phalanx +relationship: has_muscle_origin UBERON:0001450 {notes="dorsal surface of calcaneus", source="dbpedia"} ! calcaneus + +[Term] +id: UBERON:0000373 +name: tapetum of corpus callosum +def: "On either side of the corpus collosum, the fibers radiate in the white substance and pass to the various parts of the cerebral cortex; those curving forward from the genu into the frontal lobe constitute the forceps anterior, and those curving backward into the occipital lobe, the forceps posterior. Between these two parts is the main body of the fibers which constitute the tapetum and extend laterally on either side into the temporal lobe, and cover in the central part of the lateral ventricle. [Wikipedia via Greys]" [http://en.wikipedia.org/wiki/Tapetum_of_corpus_callosum] +synonym: "tapetum" BROAD INCONSISTENT [FMA:77208] +synonym: "tapetum corporis callosi" RELATED LATIN [http://en.wikipedia.org/wiki/Tapetum_of_corpus_callosum] +xref: DHBA:12027 +xref: FMA:77208 +xref: HBA:265504966 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1596 +xref: http://en.wikipedia.org/wiki/Tapetum_of_corpus_callosum +xref: http://www.snomedbrowser.com/Codes/Details/279312006 +is_a: UBERON:0002437 ! cerebral hemisphere white matter +relationship: part_of UBERON:0002336 ! corpus callosum + +[Term] +id: UBERON:0000375 +name: mandibular nerve +def: "The motor and sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the auricle, the external acoustic meatus, tympanic membrane, temporal region, the cheek, the skin overlying the mandible, the anterior portion of the tongue, the floor of the mouth, lower teeth and gingiva and transmits motor information from the muscles of mastication, the mylohyoid muscle and digastric muscle and the muscles tensor tympani and tensor veli palatini." [http://en.wikipedia.org/wiki/Mandibular_nerve, MP:0009800] +subset: pheno_slim +synonym: "inferior maxillary nerve" EXACT [FMA:52996] +synonym: "mandibular division [V3]" EXACT [FMA:52996] +synonym: "mandibular division [Vc]" EXACT [FMA:52996] +synonym: "mandibular division of fifth cranial nerve" EXACT [FMA:52996] +synonym: "mandibular division of trigeminal nerve [Vc; V3]" EXACT [FMA:52996] +synonym: "mandibular nerve [V3]" EXACT [FMA:52996] +synonym: "mandibular nerve [Vc]" EXACT [FMA:52996] +synonym: "n. mandibularis" RELATED LATIN [http://en.wikipedia.org/wiki/Mandibular_nerve] +synonym: "nervus mandibularis" RELATED [BTO:0001375] +synonym: "nervus mandibularis [v3]" EXACT LATIN [FMA:52996, FMA:TA] +synonym: "nervus mandibularis [Vc; V3]" EXACT [FMA:52996] +synonym: "nervus mandibularis [vc]" EXACT LATIN [FMA:52996, FMA:TA] +synonym: "ramus mandibularis (ramus V3)" EXACT [AAO:0010688] +synonym: "third division of fifth cranial nerve" EXACT [FMA:52996] +synonym: "third division of trigeminal nerve" EXACT [FMA:52996] +synonym: "trigeminal nerve mandibular division" RELATED [EMAPA:17798] +synonym: "trigeminal V nerve mandibular division" EXACT [MA:0001101] +xref: AAO:0010688 +xref: AAO:0010703 +xref: BTO:0001375 +xref: EHDAA2:0002086 +xref: EMAPA:17798 +xref: FMA:52996 +xref: GAID:834 +xref: http://linkedlifedata.com/resource/umls/id/C0024695 +xref: http://www.snomedbrowser.com/Codes/Details/280212008 +xref: MA:0001101 +xref: Mandibular:nerve +xref: MESH:D008340 +xref: NCIT:C32779 +xref: OpenCyc:Mx4rvcQKSpwpEbGdrcN5Y29ycA +xref: UMLS:C0024695 {source="ncithesaurus:Inferior_Maxillary_Nerve"} +xref: VHOG:0001345 +is_a: UBERON:0011779 ! nerve of head region +relationship: branching_part_of UBERON:0001645 ! trigeminal nerve +relationship: part_of UBERON:0001645 ! trigeminal nerve + +[Term] +id: UBERON:0000376 +name: hindlimb stylopod +def: "The part of the hindlimb between pelvis and the knee, corresponding to the femur." [http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +synonym: "femur" RELATED LATIN [http://en.wikipedia.org/wiki/Thigh] +synonym: "hind limb stylopod" EXACT [OBOL:automatic] +synonym: "hind limb stylopodium" EXACT [VHOG:0000349] +synonym: "hind propodium" EXACT [AAO:0000887] +synonym: "hindlimb propodium" EXACT [AAO:0000887] +synonym: "hindlimb stylopod" EXACT [OBOL:automatic] +synonym: "hindlimb stylopodium" EXACT [OBOL:automatic] +synonym: "proximal segment of free lower limb" EXACT [FMA:24967] +synonym: "stylopod of hind limb" EXACT [OBOL:automatic] +synonym: "stylopod of hindlimb" EXACT [OBOL:automatic] +synonym: "stylopod of lower limb" EXACT [] +synonym: "thigh" EXACT [] +synonym: "upper leg" EXACT HUMAN_PREFERRED [MA:0000052] +xref: BTO:0001376 +xref: CALOHA:TS-2039 +xref: EFO:0001943 +xref: EHDAA2:0002130 +xref: EHDAA:5171 +xref: EHDAA:6200 +xref: EMAPA:17499 +xref: FMA:24967 +xref: GAID:50 +xref: galen:Thigh +xref: http://en.wikipedia.org/wiki/Thigh +xref: http://linkedlifedata.com/resource/umls/id/C0039866 +xref: http://www.snomedbrowser.com/Codes/Details/302544002 +xref: MA:0000052 +xref: MESH:D013848 +xref: NCIT:C33763 +xref: OpenCyc:Mx4rvVjN7JwpEbGdrcN5Y29ycA +xref: UMLS:C0039866 {source="ncithesaurus:Thigh"} +xref: VHOG:0000349 +is_a: UBERON:0002472 ! stylopod +is_a: UBERON:0008784 ! lower limb segment +intersection_of: UBERON:0002472 ! stylopod +intersection_of: part_of UBERON:0002103 ! hindlimb +relationship: contributes_to_morphology_of UBERON:0002103 ! hindlimb +relationship: has_skeleton UBERON:0015052 ! femur endochondral element +relationship: part_of UBERON:0000978 {source="MA"} ! leg + +[Term] +id: UBERON:0000377 +name: maxillary nerve +def: "The sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the palate, upper teeth and gingiva, the skin between the palpebral fissure and the mouth, and from the nasal cavity and maxillary sinuses." [http://en.wikipedia.org/wiki/Maxillary_nerve, MP:0009799] +subset: pheno_slim +synonym: "maxillary division [V2]" EXACT [FMA:52724] +synonym: "maxillary division [Vb]" EXACT [FMA:52724] +synonym: "maxillary division of fifth cranial nerve" EXACT [FMA:52724] +synonym: "maxillary division of trigeminal nerve (Vb; V2)" EXACT [FMA:52724] +synonym: "maxillary nerve [V2]" EXACT [FMA:52724] +synonym: "maxillary nerve [Vb]" EXACT [FMA:52724] +synonym: "n. maxillaris" RELATED LATIN [http://en.wikipedia.org/wiki/Maxillary_nerve] +synonym: "nervus maxillaris" RELATED [BTO:0001378] +synonym: "nervus maxillaris (Vb; V2)" EXACT [FMA:52724] +synonym: "nervus maxillaris [v2]" EXACT LATIN [FMA:52724, FMA:TA] +synonym: "nervus maxillaris [vb]" EXACT LATIN [FMA:52724, FMA:TA] +synonym: "ramus maxillaris (ramus V2)" EXACT [AAO:0010670] +synonym: "second division of fifth cranial nerve" EXACT [FMA:52724] +synonym: "second division of trigeminal nerve" EXACT [FMA:52724] +synonym: "trigeminal nerve maxillary division" RELATED [EMAPA:17799] +synonym: "trigeminal V nerve maxillary division" EXACT [MA:0001103] +xref: AAO:0010670 +xref: BTO:0001378 +xref: EHDAA2:0002087 +xref: EMAPA:17799 +xref: FMA:52724 +xref: GAID:836 +xref: http://www.snomedbrowser.com/Codes/Details/280211001 +xref: MA:0001103 +xref: Maxillary:nerve +xref: MESH:D008442 +xref: OpenCyc:Mx4rvWNU9JwpEbGdrcN5Y29ycA +xref: VHOG:0001346 +is_a: UBERON:0011779 ! nerve of head region +relationship: branching_part_of UBERON:0001645 ! trigeminal nerve +relationship: part_of UBERON:0001645 ! trigeminal nerve + +[Term] +id: UBERON:0000378 +name: tongue muscle +def: "The muscular portion of the tongue." [http://en.wikipedia.org/wiki/Muscles_of_tongue, MP:0004136] +subset: pheno_slim +synonym: "muscle of tongue" EXACT [FMA:46689] +synonym: "muscle organ of tongue" EXACT [OBOL:accepted] +synonym: "musculi linguae" RELATED LATIN [http://en.wikipedia.org/wiki/Muscles_of_tongue] +synonym: "skeletal muscle tissue of tongue" EXACT [OBOL:automatic] +synonym: "tongue skeletal muscle" EXACT [OBOL:automatic] +synonym: "tongue skeletal muscle tissue" EXACT [OBOL:automatic] +xref: BTO:0001386 +xref: EHDAA2:0002065 +xref: EHDAA:9146 +xref: EMAPA:17883 +xref: FMA:46689 +xref: http://en.wikipedia.org/wiki/Muscles_of_tongue +xref: http://linkedlifedata.com/resource/umls/id/C0448325 +xref: http://linkedlifedata.com/resource/umls/id/C1710437 +xref: http://www.snomedbrowser.com/Codes/Details/244781004 +xref: MA:0001596 +xref: NCIT:C49301 +xref: NCIT:C52707 +xref: UMLS:C0448325 {source="ncithesaurus:Tongue_Muscle"} +xref: UMLS:C1710437 {source="ncithesaurus:Tongue_Skeletal_Muscle_Tissue"} +xref: VHOG:0001390 +is_a: UBERON:0010959 ! craniocervical muscle +is_a: UBERON:0013765 ! digestive system element +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: attaches_to_part_of UBERON:0001723 ! tongue +union_of: UBERON:0001575 ! extrinsic muscle of tongue +union_of: UBERON:0001576 ! intrinsic muscle of tongue +relationship: attaches_to_part_of UBERON:0001723 ! tongue +relationship: contributes_to_morphology_of UBERON:0001723 ! tongue +relationship: develops_from UBERON:0005594 {source="FEED:rd", source="ISBN:1607950324"} ! head somite +relationship: part_of UBERON:0000165 ! mouth + +[Term] +id: UBERON:0000379 +name: tracheal mucosa +def: "A mucosa that is part of a respiratory airway." [OBOL:automatic] +synonym: "mucosa of organ of trachea" EXACT [OBOL:automatic] +synonym: "mucosa of organ of windpipe" EXACT [OBOL:automatic] +synonym: "mucosa of trachea" EXACT [OBOL:automatic] +synonym: "mucosa of windpipe" EXACT [OBOL:automatic] +synonym: "mucous membrane of trachea" EXACT [FMA:7471] +synonym: "mucous membrane of trachea" EXACT [OBOL:automatic] +synonym: "mucous membrane of windpipe" EXACT [OBOL:automatic] +synonym: "organ mucosa of trachea" EXACT [OBOL:automatic] +synonym: "organ mucosa of windpipe" EXACT [OBOL:automatic] +synonym: "trachea mucosa" EXACT [OBOL:automatic] +synonym: "trachea mucosa of organ" EXACT [OBOL:automatic] +synonym: "trachea mucous membrane" EXACT [OBOL:automatic] +synonym: "trachea organ mucosa" EXACT [OBOL:automatic] +synonym: "tracheal mucous membrane" EXACT [FMA:7471] +synonym: "tunica mucosa (tracheae)" EXACT [FMA:7471] +synonym: "tunica mucosa tracheae" EXACT LATIN [FMA:7471, FMA:TA] +synonym: "windpipe mucosa" EXACT [OBOL:automatic] +synonym: "windpipe mucosa of organ" EXACT [OBOL:automatic] +synonym: "windpipe mucous membrane" EXACT [OBOL:automatic] +synonym: "windpipe organ mucosa" EXACT [OBOL:automatic] +xref: BTO:0001390 +xref: FMA:7471 +xref: http://www.snomedbrowser.com/Codes/Details/660006 +is_a: UBERON:0004785 ! respiratory system mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001005 ! respiratory airway +relationship: part_of UBERON:0001005 ! respiratory airway + +[Term] +id: UBERON:0000380 +name: obsolete tuber +xref: BTO:0001400 +xref: OpenCyc:Mx4raeDj5Cw8QdiT7e8pb2JzAA +is_obsolete: true +consider: EFO:0001015 +consider: FMA:75430 + +[Term] +id: UBERON:0000381 +name: urinary bladder detrusor smooth muscle +def: "bundles of smooth muscle fibers forming the muscular wall of the urinary bladder, which are arranged in a longitudinal and a circular layer and, on contraction, serve to expel urine[MP]." [http://en.wikipedia.org/wiki/Detrusor_urinae_muscle, MP:0011774] +subset: pheno_slim +synonym: "detrusor" EXACT [FMA:68018] +synonym: "detrusor muscle" EXACT [BTO:0001453] +synonym: "detrusor muscle of bladder" EXACT [EMAPA:28637] +synonym: "detrusor smooth muscle" EXACT [] +synonym: "detrusor urinae muscle" EXACT [http://en.wikipedia.org/wiki/Detrusor_urinae_muscle] +synonym: "muscularis propria" BROAD [http://en.wikipedia.org/wiki/Detrusor_urinae_muscle, ncithesaurus:Muscularis_Propria] +synonym: "muscularis propria of the urinary bladder" EXACT [http://en.wikipedia.org/wiki/Detrusor_urinae_muscle] +synonym: "musculus detrusor vesicae" EXACT LATIN [FMA:68018, FMA:TA] +synonym: "musculus detrusor vesicae urinariae" RELATED LATIN [http://en.wikipedia.org/wiki/Detrusor_urinae_muscle] +synonym: "urinary bladder detrusor muscle" EXACT [MA:0001698] +synonym: "urinary bladder detrussor smooth muscle" EXACT [MA:0001698] +xref: BTO:0001453 +xref: EMAPA:28637 +xref: FMA:68018 +xref: http://en.wikipedia.org/wiki/Detrusor_urinae_muscle +xref: http://www.snomedbrowser.com/Codes/Details/279414008 +xref: MA:0001698 +xref: NCIT:C62404 +is_a: UBERON:0004228 ! urinary bladder smooth muscle +relationship: contributes_to_morphology_of UBERON:0001255 ! urinary bladder +relationship: has_muscle_insertion UBERON:0000996 {gci_filler="UBERON:0003100", gci_relation="part_of", notes="female", source="dbpedia-modified"} ! vagina +relationship: has_muscle_insertion UBERON:0002367 {gci_filler="UBERON:0003101", gci_relation="part_of", notes="male", source="dbpedia-modified"} ! prostate gland +relationship: has_muscle_origin UBERON:0001275 {notes="posterior surface of the body of the pubis", source="dbpedia"} ! pubis +relationship: part_of UBERON:0012378 {source="FMA"} ! muscle layer of urinary bladder + +[Term] +id: UBERON:0000382 +name: apocrine sweat gland +def: "Apocrine sweat glands are sweat glands composed of a coiled secretory portion located at the junction of the dermis and subcutaneous fat, from which a straight portion inserts and secretes into the infundibular portion of the hair follicle. The ducts of apocrine glands open into the canals of hair follicles. The stimulus for the secretion of apocrine sweat glands is adrenaline, which is a hormone carried in the blood[WP]." [http://en.wikipedia.org/wiki/Apocrine_sweat_gland] +subset: organ_slim +subset: pheno_slim +synonym: "glandula sudorifera apocrina" EXACT LATIN [http://en.wikipedia.org/wiki/Apocrine_sweat_gland] +xref: BTO:0001458 +xref: EMAPA:37426 {source="MA:th"} +xref: FMA:59155 +xref: http://en.wikipedia.org/wiki/Apocrine_sweat_gland +xref: http://linkedlifedata.com/resource/umls/id/C0930083 +xref: http://www.snomedbrowser.com/Codes/Details/399916008 +xref: MESH:D001050 +xref: NCIT:C32132 +xref: UMLS:C0930083 {source="ncithesaurus:Apocrine_Sweat_Gland"} +is_a: UBERON:0001820 {source="FMA"} ! sweat gland +is_a: UBERON:0010243 {notes="The term apocrine sweat gland is a misnomer. While it was once thought that apocrine sweat glands were true apocrine glands, it is now known that they use merocrine excretion. However, they have retained the original name", source="Wikipedia"} ! merocrine gland +disjoint_from: UBERON:0000423 ! eccrine sweat gland + +[Term] +id: UBERON:0000383 +name: musculature of body +def: "The subdivision of the musculoskeletal system that consists of all the muscles of the body[VSAO, modified]." [VSAO:0000033] +subset: efo_slim +subset: pheno_slim +synonym: "muscle system" EXACT [] +synonym: "muscle system of body" EXACT [] +synonym: "muscular system" EXACT [FMA:72954] +synonym: "musculature system" EXACT [BILA:0000088] +synonym: "muskelsystem" RELATED [BTO:0001485] +synonym: "set of all muscles" EXACT [FMA:72954] +synonym: "set of muscles of body" EXACT [FMA:72954] +synonym: "vertebrate muscular system" EXACT [BTO:0001369] +xref: AAO:0000307 +xref: BILA:0000088 +xref: BTO:0001369 +xref: BTO:0001485 +xref: EFO:0000801 +xref: EMAPA:35578 +xref: FBbt:00005069 +xref: FMA:72954 +xref: MA:0002888 +xref: MAT:0000025 +xref: MIAA:0000025 +xref: VSAO:0000033 +xref: XAO:0004042 +is_a: UBERON:0011216 ! organ system subdivision +intersection_of: UBERON:0011216 ! organ system subdivision +intersection_of: composed_primarily_of UBERON:0001015 ! musculature +relationship: composed_primarily_of UBERON:0001015 ! musculature +relationship: part_of UBERON:0002204 ! musculoskeletal system + +[Term] +id: UBERON:0000385 +name: obsolete labial gland +comment: the label 'labial gland' refers to two distinct classes. From the BTO def: 1. One of the small tubular mucous and serous glands lying beneath the mucous membrane of the lips.n2. A salivary gland, or modification thereof, opening at the base of the labium in certain insects. +synonym: "glandulae labiales" EXACT LATIN [FMA:71613, FMA:TA] +synonym: "Labial glands" EXACT [FMA:71613] +synonym: "Labial glands set" EXACT [FMA:71613] +xref: BTO:0001548 +is_obsolete: true +consider: FMA:71613 +consider: HAO:0000449 + +[Term] +id: UBERON:0000387 +name: meniscus +def: "crescent-shaped fibrocartilaginous structure present in the knee, acromioclavicular, sternoclavicular, and temporomandibular joints[2] that, in contrast to articular disks, only partly divides a joint cavity.[3] A small meniscus also occurs in the radio-carpal joint." [http://en.wikipedia.org/wiki/Meniscus_(anatomy)] +synonym: "articular disc" EXACT [FMA:76690] +xref: BTO:0001592 +xref: EV:0100145 +xref: FMA:76690 +xref: galen:Meniscus +xref: http://linkedlifedata.com/resource/umls/id/C0224498 +xref: Meniscus:(anatomy) +xref: NCIT:C33096 +xref: UMLS:C0224498 {source="ncithesaurus:Meniscus"} +is_a: UBERON:0010000 ! multicellular anatomical structure +relationship: composed_primarily_of UBERON:0001995 ! fibrocartilage +relationship: part_of UBERON:0000982 ! skeletal joint + +[Term] +id: UBERON:0000388 +name: epiglottis +def: "A part of the pharynx that consists of a flap of elastic cartilage tissue plus a mucous membrane covering, attached to the entrance of the larynx. The epiglottis is found at the root of the tongue and folds back over the entrance to the larynx during swallowing, preventing inhalation of food or drink[MP,modified]" [http://en.wikipedia.org/wiki/Epiglottis, http://orcid.org/0000-0002-6601-2165, MGI:llw2, MP:0010371] +subset: pheno_slim +xref: BTO:0001628 +xref: EHDAA2:0004081 +xref: EMAPA:18289 +xref: FMA:55130 +xref: GAID:111 +xref: http://en.wikipedia.org/wiki/Epiglottis +xref: http://linkedlifedata.com/resource/umls/id/C0014540 +xref: http://www.snomedbrowser.com/Codes/Details/245502004 +xref: MESH:A02.165.507.411 +xref: NCIT:C12709 +xref: OpenCyc:Mx4rvVjxE5wpEbGdrcN5Y29ycA +xref: UMLS:C0014540 {source="ncithesaurus:Epiglottis"} +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0013522 ! subdivision of tube +relationship: develops_from UBERON:0003115 {source="EHDAA2"} ! pharyngeal arch 4 +relationship: has_component UBERON:0001742 ! epiglottic cartilage +relationship: has_component UBERON:0004982 ! mucosa of epiglottis +relationship: part_of UBERON:0001051 ! hypopharynx + +[Term] +id: UBERON:0000389 +name: lens cortex +def: "Tissue that surrounds the lens nucleus" [http://www.thefreedictionary.com/lens+cortex] +synonym: "cortex of lens" EXACT [FMA:58970] +xref: BTO:0001632 +xref: CALOHA:TS-0542 +xref: FMA:58970 +xref: http://www.snomedbrowser.com/Codes/Details/280626006 +xref: MESH:A09.371.509.225 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000479 ! tissue +intersection_of: surrounds UBERON:0000390 ! lens nucleus +relationship: develops_from UBERON:0005614 ! lens anterior epithelium +relationship: part_of UBERON:0000965 ! lens of camera-type eye +relationship: surrounds UBERON:0000390 ! lens nucleus + +[Term] +id: UBERON:0000390 +name: lens nucleus +def: "The core of the crystalline lens, surrounded by the cortex." [BTO:0001633] +synonym: "nucleus of lens" EXACT [FMA:58971] +xref: BTO:0001633 +xref: FMA:58971 +xref: http://www.snomedbrowser.com/Codes/Details/280628007 +xref: MESH:A09.371.509.670 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0034944 ! zone of organ +intersection_of: UBERON:0034944 ! zone of organ +intersection_of: surrounded_by UBERON:0000389 ! lens cortex +relationship: develops_from UBERON:0005614 ! lens anterior epithelium +relationship: part_of UBERON:0000965 ! lens of camera-type eye +relationship: surrounded_by UBERON:0000389 ! lens cortex + +[Term] +id: UBERON:0000391 +name: leptomeninx +def: "pia mater or arachnoid mater." [http://en.wikipedia.org/wiki/Leptomeninges, https://github.com/obophenotype/uberon/issues/300] +subset: organ_slim +synonym: "arachnoid mater and pia mater" RELATED [FMA:231515] +synonym: "arachnoidea mater et pia mater" RELATED [BTO:0001634] +synonym: "leptomeninges" EXACT PLURAL [NLXANAT:090207] +synonym: "pia-arachnoid" RELATED [BTO:0001634] +synonym: "pia-arachnoid of neuraxis" RELATED [FMA:231515] +xref: BTO:0001634 +xref: CALOHA:TS-0546 +xref: FMA:231515 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2347 +xref: http://en.wikipedia.org/wiki/Leptomeninges +xref: http://linkedlifedata.com/resource/umls/id/C0228126 +xref: http://www.snomedbrowser.com/Codes/Details/362303006 +xref: NCIT:C32979 +xref: NLXANAT:090207 +xref: UMLS:C0228126 {source="ncithesaurus:Leptomeninges"} +is_a: UBERON:0002360 ! meninx +is_a: UBERON:0010313 ! neural crest-derived structure +property_value: dc-contributor https://github.com/cmungall +relationship: develops_from UBERON:0007646 ! endomeninx +relationship: immediate_transformation_of UBERON:0007646 ! endomeninx + +[Term] +id: UBERON:0000392 +name: longissimus muscle +def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [http://en.wikipedia.org/wiki/Longissimus] +synonym: "intermediate column of erector spinae" RELATED [] +synonym: "longissimus" EXACT [FMA:77178] +synonym: "musculus longissimus" EXACT LATIN [http://en.wikipedia.org/wiki/Longissimus] +synonym: "musculus longissimus" EXACT [BTO:0001648] +xref: BTO:0001648 +xref: EMAPA:37648 {source="MA:th"} +xref: FMA:77178 +xref: http://en.wikipedia.org/wiki/Longissimus +xref: http://www.snomedbrowser.com/Codes/Details/244858006 +is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column +relationship: has_muscle_insertion UBERON:0001077 {source="dbpedia"} ! transverse process of vertebra +relationship: has_muscle_origin UBERON:0001077 {source="dbpedia"} ! transverse process of vertebra +relationship: innervated_by UBERON:0006839 {source="dbpedia"} ! dorsal ramus of spinal nerve +relationship: part_of UBERON:0002462 {source="BTO"} ! erector spinae muscle group + +[Term] +id: UBERON:0000395 +name: cochlear ganglion +def: "The group of nerve cell bodies that conveys auditory sensation from the organ of Corti to the hindbrain and resides on the cochlear part of the vestibulocochlear nerve (eighth cranial nerve)[MP]. distributed to the hair cells of the spiral organ. The cochlear fibers arise in bipolar cells in the spiral ganglion in the modiolus." [http://www.dartmouth.edu/~humananatomy/part_8/chapter_44.html, MP:0002855] +subset: pheno_slim +synonym: "cochlear part of vestibulocochlear ganglion" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "Corti's ganglion" EXACT [FMA:53445] +synonym: "ganglion cochlearis" RELATED [BTO:0001688] +synonym: "ganglion of Corti" EXACT [FMA:53445] +synonym: "ganglion spirale" RELATED LATIN [http://en.wikipedia.org/wiki/Spiral_ganglion] +synonym: "ganglion spirale cochleae" RELATED [BTO:0001688] +synonym: "spiral ganglion" EXACT [FMA:53445] +synonym: "spiral ganglion of cochlea" RELATED [BTO:0001688] +synonym: "vestibulocochlear ganglion cochlear component" RELATED [EMAPA:17572] +synonym: "vestibulocochlear VIII ganglion cochlear component" EXACT [MA:0001085] +xref: BAMS:GcVIII +xref: BTO:0001688 +xref: EHDAA2:0002198 +xref: EMAPA:17572 +xref: FMA:53445 +xref: GAID:722 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1405 +xref: http://www.snomedbrowser.com/Codes/Details/368955007 +xref: MA:0001085 +xref: MESH:D013136 +xref: Spiral:ganglion +xref: VHOG:0001183 +is_a: UBERON:0001714 ! cranial ganglion +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0001714 ! cranial ganglion +intersection_of: extends_fibers_into UBERON:0004727 ! cochlear nerve +relationship: extends_fibers_into UBERON:0004727 ! cochlear nerve +relationship: located_in UBERON:0006723 {notes="cell bodies", source="BTO-modified", source="Wikipedia"} ! cochlear modiolus +relationship: part_of UBERON:0002827 ! vestibulocochlear ganglion +relationship: part_of UBERON:0016490 ! auditory system + +[Term] +id: UBERON:0000396 +name: vallate papilla +alt_id: UBERON:0002927 +def: "Any of the large papillae, which have multiple taste buds in the trough surrounding the papillae, located near the base and on the dorsal side of the tongue" [MGI:smb, MP:0006258] +subset: pheno_slim +synonym: "circumvallate papilla" EXACT [MA:0001594] +synonym: "circumvallate papilla of tongue" EXACT [FMA:54822] +synonym: "circumvallate papillae" RELATED PLURAL [] +synonym: "papilla vallatae" EXACT PLURAL [FMA:71449, FMA:TA] +synonym: "vallate papilla of tongue" EXACT [] +xref: BIRNLEX:4106_2 +xref: BTO:0001705 +xref: EMAPA:18271 +xref: FMA:54822 +xref: http://linkedlifedata.com/resource/umls/id/C0226965 +xref: http://linkedlifedata.com/resource/umls/id/C1182961 +xref: http://linkedlifedata.com/resource/umls/id/C1267555 +xref: http://www.snomedbrowser.com/Codes/Details/69517000 +xref: MA:0001594 +xref: NCIT:C32322 +xref: UMLS:C0226965 {source="BIRNLEX:4106_2"} +xref: UMLS:C1182961 {source="BIRNLEX:4106_2"} +xref: UMLS:C1182961 {source="ncithesaurus:Circumvallate_Papilla"} +xref: UMLS:C1267555 {source="BIRNLEX:4106_2"} +xref: Vallate:papilla +is_a: UBERON:0014389 ! gustatory papilla of tongue + +[Term] +id: UBERON:0000397 +name: colonic epithelium +def: "An epithelium that is part of a colon [Automatically generated definition]." [OBOL:automatic] +subset: vertebrate_core +synonym: "colon epithelial tissue" EXACT [OBOL:automatic] +synonym: "colon epithelium" EXACT [FMA:17302] +synonym: "colon epithelium" EXACT [OBOL:automatic] +synonym: "epithelial tissue of colon" EXACT [OBOL:automatic] +synonym: "epithelial tissue of large bowel" EXACT [OBOL:automatic] +synonym: "epithelium of colon" EXACT [OBOL:automatic] +synonym: "epithelium of large bowel" EXACT [OBOL:automatic] +synonym: "large bowel epithelial tissue" EXACT [OBOL:automatic] +synonym: "large bowel epithelium" EXACT [OBOL:automatic] +synonym: "posterior intestine epithelium" EXACT [ZFA:0005128] +xref: BTO:0001709 +xref: CALOHA:TS-0163 +xref: EMAPA:18941 +xref: FMA:17302 +xref: http://www.snomedbrowser.com/Codes/Details/42978003 +xref: MA:0003195 +xref: TAO:0005128 +xref: ZFA:0005128 +is_a: UBERON:0001278 ! epithelium of large intestine +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001155 ! colon +relationship: part_of UBERON:0001155 ! colon + +[Term] +id: UBERON:0000398 +name: cartilage tissue of sternum +def: "Any portion of cartilage tissue that is part of the sternum" [https://orcid.org/0000-0002-6601-2165] +comment: Examples: cartilage of manubrium, cartilage of xiphoid process +synonym: "cartilage of sternum" EXACT [FMA:32567] +xref: FMA:32567 +is_a: UBERON:0002418 ! cartilage tissue +is_a: UBERON:0003837 ! thoracic segment connective tissue +intersection_of: UBERON:0002418 ! cartilage tissue +intersection_of: part_of UBERON:0000975 ! sternum +relationship: part_of UBERON:0000975 ! sternum + +[Term] +id: UBERON:0000399 +name: jejunal mucosa +def: "A mucosa that is part of a jejunum [Automatically generated definition]." [OBOL:automatic] +synonym: "jejunal mucous membrane" EXACT [FMA:14949] +synonym: "jejunum mucosa" EXACT [FMA:14949] +synonym: "jejunum mucosa of organ" EXACT [OBOL:automatic] +synonym: "jejunum mucous membrane" EXACT [OBOL:automatic] +synonym: "jejunum organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of jejunum" EXACT [FMA:14949] +synonym: "mucosa of organ of jejunum" EXACT [OBOL:automatic] +synonym: "mucous membrane of jejunum" EXACT [OBOL:automatic] +synonym: "organ mucosa of jejunum" EXACT [OBOL:automatic] +xref: BTO:0001742 +xref: CALOHA:TS-0495 +xref: EMAPA:27109 +xref: FMA:14949 +xref: http://www.snomedbrowser.com/Codes/Details/362151009 +xref: MA:0003214 +is_a: UBERON:0001204 ! mucosa of small intestine +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0002115 ! jejunum +relationship: part_of UBERON:0002115 ! jejunum + +[Term] +id: UBERON:0000400 +name: jejunal epithelium +def: "An epithelium that is part of a jejunum." [OBOL:automatic] +synonym: "epithelium of jejunum" EXACT [] +xref: BTO:0001743 +xref: CALOHA:TS-0494 +xref: EMAPA:18668 +xref: FMA:17232 +xref: http://www.snomedbrowser.com/Codes/Details/57300004 +xref: MA:0003215 +is_a: UBERON:0013636 ! epithelium of intestinal villus +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002115 ! jejunum +relationship: part_of UBERON:0008343 {source="FMA"} ! intestinal villus of jejunum + +[Term] +id: UBERON:0000401 +name: mandibular ramus +def: "the upturned perpendicular extremity of the mandible" [ISBN:0-683-40008-8, MP:0010150] +subset: pheno_slim +synonym: "lower ramus" RELATED [http://en.wikipedia.org/wiki/Ramus_of_the_mandible] +synonym: "mandible ramus" EXACT [MA:0002815] +synonym: "rami mandibulae" RELATED PLURAL [http://en.wikipedia.org/wiki/Ramus_of_the_mandible] +synonym: "ramus mandibulae" RELATED PLURAL [http://en.wikipedia.org/wiki/Ramus_of_the_mandible] +synonym: "ramus mandibulae" RELATED LATIN [http://en.wikipedia.org/wiki/Ramus_of_the_mandible] +synonym: "ramus of mandible" EXACT [FMA:52828] +xref: BTO:0001751 +xref: EMAPA:25100 +xref: FMA:52828 +xref: http://en.wikipedia.org/wiki/Ramus_of_the_mandible +xref: http://www.snomedbrowser.com/Codes/Details/361739000 +xref: MA:0002815 +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: contributes_to_morphology_of UBERON:0001684 ! mandible +relationship: part_of UBERON:0001684 ! mandible + +[Term] +id: UBERON:0000402 +name: nasal vestibule +def: "The nasal vestibule is the most anterior part of the nasal cavity. It's enclosed by the cartilages of nose and lined by the same epithelium of the skin. The other part of the nasal cavity, which is lined by the respiratory epithelium, is called nasal cavity proper. [WP,unvetted]." [http://en.wikipedia.org/wiki/Nasal_vestibule] +synonym: "vestibular part of nasal cavity" EXACT [FMA:59644] +synonym: "vestibulum nasale" RELATED [BTO:0001761] +synonym: "vestibulum nasi" RELATED [BTO:0001761] +synonym: "vestibulum nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Nasal_vestibule] +xref: BTO:0001761 +xref: CALOHA:TS-0660 +xref: FMA:59644 +xref: http://www.snomedbrowser.com/Codes/Details/278940000 +xref: Nasal:vestibule +is_a: UBERON:0002553 ! anatomical cavity +relationship: part_of UBERON:0001707 ! nasal cavity + +[Term] +id: UBERON:0000403 +name: scalp +def: "The outer covering of the calvaria. It is composed of several layers: SKIN; subcutaneous connective tissue; the occipitofrontal muscle which includes the tendonous galea aponeurotica; Loose connective tissue; and the pericranium (the PERIOSTEUM of the SKULL)." [MESH:A01.456.810] +subset: pheno_slim +synonym: "scalpus" RELATED LATIN [http://en.wikipedia.org/wiki/Scalp] +xref: BTO:0001809 +xref: CALOHA:TS-0896 +xref: EMAPA:37949 {source="MA:th"} +xref: FMA:46494 +xref: GAID:80 +xref: galen:Scalp +xref: http://en.wikipedia.org/wiki/Scalp +xref: http://linkedlifedata.com/resource/umls/id/C0036270 +xref: http://www.snomedbrowser.com/Codes/Details/181480002 +xref: MESH:D012535 +xref: NCIT:C89807 +xref: OpenCyc:Mx4rwNtaz5wpEbGdrcN5Y29ycA +xref: UMLS:C0036270 {source="ncithesaurus:Scalp"} +is_a: UBERON:0034921 ! multi organ part structure +relationship: has_part UBERON:0000014 ! zone of skin +relationship: has_part UBERON:0002384 ! connective tissue +relationship: has_part UBERON:0002515 ! periosteum +relationship: part_of UBERON:0000033 {source="BTO"} ! head + +[Term] +id: UBERON:0000407 +name: sympathetic trunk +def: "One of a a paired bundle of nerve fibers plus ganglia that run from the base of the skull to the coccyx." [http://en.wikipedia.org/wiki/Sympathetic_trunk, http://orcid.org/0000-0002-6601-2165] +synonym: "gangliated cord" EXACT [http://en.wikipedia.org/wiki/Sympathetic_trunk] +synonym: "sympathetic chain" EXACT [FMA:6258] +synonym: "sympathetic ganglionic chain" EXACT [http://en.wikipedia.org/wiki/Sympathetic_trunk] +synonym: "truncus sympathicus" RELATED LATIN [http://en.wikipedia.org/wiki/Sympathetic_trunk] +xref: AAO:0010791 +xref: BAMS:S +xref: BTO:0001834 +xref: CALOHA:TS-2049 +xref: EV:0100374 +xref: FMA:6258 +xref: http://www.snomedbrowser.com/Codes/Details/181099004 +xref: Sympathetic:trunk +xref: XAO:0000211 +is_a: UBERON:0000062 ! organ +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0000013 {source="FMA-abduced-lr"} ! sympathetic nervous system +relationship: part_of UBERON:0000013 ! sympathetic nervous system + +[Term] +id: UBERON:0000408 +name: vertebral ganglion +def: "Any of a group of sympathetic ganglia which form two chains extending from the base of the skull to the coccyx along the sides of the spinal column." [BTO:0001835] +synonym: "intermediate ganglion" EXACT [FMA:6572] +xref: BTO:0001835 +xref: FMA:6572 +xref: http://www.snomedbrowser.com/Codes/Details/176596009 +is_a: UBERON:0001807 ! paravertebral ganglion +relationship: part_of UBERON:0001991 ! cervical ganglion + +[Term] +id: UBERON:0000409 +name: serous gland +def: "A gland in which the principal secretory cells are serous secreting cells." [http://orcid.org/0000-0002-6601-2165, http://www.siumed.edu/~dking2/intro/glands.htm] +subset: organ_slim +subset: pheno_slim +xref: BTO:0001837 +xref: EMAPA:37950 {source="MA:th"} +xref: FMA:62889 +xref: Serous:gland +is_a: UBERON:0002365 ! exocrine gland +relationship: has_part UBERON:0013232 ! serous acinus +relationship: produces UBERON:0007794 ! secretion of serous gland + +[Term] +id: UBERON:0000410 +name: bronchial mucosa +def: "A mucosa that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchi mucosa" EXACT [OBOL:automatic] +synonym: "bronchi mucosa of organ" EXACT [OBOL:automatic] +synonym: "bronchi mucous membrane" EXACT [OBOL:automatic] +synonym: "bronchi organ mucosa" EXACT [OBOL:automatic] +synonym: "bronchial trunk mucosa" EXACT [OBOL:automatic] +synonym: "bronchial trunk mucosa of organ" EXACT [OBOL:automatic] +synonym: "bronchial trunk mucous membrane" EXACT [OBOL:automatic] +synonym: "bronchial trunk organ mucosa" EXACT [OBOL:automatic] +synonym: "bronchus mucosa" EXACT [OBOL:automatic] +synonym: "bronchus mucosa of organ" EXACT [OBOL:automatic] +synonym: "bronchus mucous membrane" EXACT [OBOL:automatic] +synonym: "bronchus organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of bronchi" EXACT [OBOL:automatic] +synonym: "mucosa of bronchial trunk" EXACT [OBOL:automatic] +synonym: "mucosa of bronchus" EXACT [OBOL:automatic] +synonym: "mucosa of organ of bronchi" EXACT [OBOL:automatic] +synonym: "mucosa of organ of bronchial trunk" EXACT [OBOL:automatic] +synonym: "mucosa of organ of bronchus" EXACT [OBOL:automatic] +synonym: "mucous membrane of bronchi" EXACT [OBOL:automatic] +synonym: "mucous membrane of bronchial trunk" EXACT [OBOL:automatic] +synonym: "mucous membrane of bronchus" EXACT [FMA:62652] +synonym: "mucous membrane of bronchus" EXACT [OBOL:automatic] +synonym: "organ mucosa of bronchi" EXACT [OBOL:automatic] +synonym: "organ mucosa of bronchial trunk" EXACT [OBOL:automatic] +synonym: "organ mucosa of bronchus" EXACT [OBOL:automatic] +synonym: "tunica mucosa bronchi" EXACT LATIN [FMA:62652, FMA:TA] +xref: BTO:0001846 +xref: FMA:62652 +xref: http://www.snomedbrowser.com/Codes/Details/30802009 +is_a: UBERON:0000379 ! tracheal mucosa +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0002185 ! bronchus +relationship: part_of UBERON:0002185 ! bronchus + +[Term] +id: UBERON:0000411 +name: visual cortex +def: "the part of the cerebral cortex responsible for processing visual information." [http://en.wikipedia.org/wiki/Visual_cortex] +comment: The visual cortex is made up of Brodmann area 17 (the primary visual cortex), and Brodmann area 18 and Brodmann area 19, the extrastriate cortical areas. +subset: efo_slim +synonym: "higher-order visual cortex" RELATED [FMA:242644] +synonym: "visual areas" RELATED [BAMS:VIS] +xref: BAMS:VIS +xref: BTO:0001857 +xref: CALOHA:TS-1117 +xref: EFO:0000916 +xref: EMAPA:36446 +xref: EV:0100171 +xref: FMA:242644 +xref: GAID:679 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1911 +xref: MBA:669 +xref: MESH:A08.186.211.730.885.213.571.735 +xref: Visual:cortex +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0035014 {source="cjm"} ! functional part of brain +relationship: part_of UBERON:0016540 {source="tgbugs"} ! occipital cortex + +[Term] +id: UBERON:0000412 +name: dermal papilla +def: "A mesodermal signaling center of the hair follicle consisting of closely packed specialized mesenchymal fibroblasts. Framed by the enlarged bulb matrix in anagen." [https://doi.org/10.1016/j.cub.2008.12.005] +subset: pheno_slim +synonym: "dermal papilla cell" RELATED [BTO:0001858] +synonym: "dermal papillae" EXACT PLURAL [] +synonym: "follicular papilla" EXACT [FMA:70737] +synonym: "hair follicle dermal papilla" RELATED [MP:0010687] +synonym: "hair papilla" RELATED [] +synonym: "papilla corii" RELATED [BTO:0001858] +synonym: "papilla dermatis" RELATED [BTO:0001858] +synonym: "papilla dermis" RELATED [BTO:0001858] +synonym: "papilla of corium" RELATED [BTO:0001858] +synonym: "papillae dermis" RELATED LATIN [http://en.wikipedia.org/wiki/Dermal_papillae] +synonym: "skin papilla" RELATED [BTO:0001858] +xref: BTO:0001858 +xref: CALOHA:TS-0431 +xref: Dermal:papillae +xref: EMAPA:36484 +xref: FMA:70737 +xref: http://linkedlifedata.com/resource/umls/id/C0221931 +xref: http://www.snomedbrowser.com/Codes/Details/320101005 +xref: NCIT:C32710 +xref: NCIT:C83189 +xref: UMLS:C0221931 {source="ncithesaurus:Dermal_Papilla"} +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001992 ! papillary layer of dermis + +[Term] +id: UBERON:0000414 +name: mucous gland +def: "A gland in which the principal secretory cells are mucus secreting cells." [http://orcid.org/0000-0002-6601-2165, http://www.siumed.edu/~dking2/intro/glands.htm] +subset: organ_slim +synonym: "glandula mucosa" EXACT LATIN [http://en.wikipedia.org/wiki/Mucous_gland] +synonym: "muciparous gland" RELATED [BTO:0001979] +synonym: "mucous secreting gland" RELATED [] +synonym: "mucus gland" RELATED [] +synonym: "mucus-secreting gland" RELATED [] +xref: AAO:0010601 +xref: BTO:0001979 +xref: EMAPA:37913 {source="MA:th"} +xref: FMA:62888 +xref: Mucous:gland +is_a: UBERON:0002365 ! exocrine gland +disjoint_from: UBERON:3010602 ! granular gland +relationship: produces UBERON:0000912 ! mucus + +[Term] +id: UBERON:0000415 +name: artery wall +def: "An anatomical wall that is part of an artery [Automatically generated definition]." [OBOL:automatic] +synonym: "arterial wall" EXACT [FMA:14155] +synonym: "wall of artery" EXACT [FMA:14155] +xref: BTO:0002009 +xref: FMA:14155 +xref: galen:ArterialWall +is_a: UBERON:0035965 ! wall of blood vessel +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0001637 ! artery +relationship: part_of UBERON:0001637 ! artery + +[Term] +id: UBERON:0000416 +name: subdural space +def: "A narrow fluid-containing space, often only a potential space, between the dura mater and the arachnoid." [BTO:0002082, http://en.wikipedia.org/wiki/Subdural_space, http://www.ncbi.nlm.nih.gov/pubmed/8421539] +synonym: "cavum subdurale" RELATED [BTO:0002082] +synonym: "cavum subdurale" RELATED LATIN [http://en.wikipedia.org/wiki/Subdural_space] +synonym: "spatium subdurale" RELATED [BTO:0002082] +synonym: "spatium subdurale" RELATED LATIN [http://en.wikipedia.org/wiki/Subdural_space] +synonym: "subdural cavity" RELATED [BTO:0002082] +synonym: "subdural cleavage" RELATED [BTO:0002082] +synonym: "subdural cleft" RELATED [BTO:0002082] +xref: BTO:0002082 +xref: FMA:83803 +xref: GAID:692 +xref: http://www.snomedbrowser.com/Codes/Details/362308002 +xref: MESH:D013355 +xref: Subdural:space +is_a: UBERON:0000464 ! anatomical space +relationship: adjacent_to UBERON:0002362 ! arachnoid mater +relationship: adjacent_to UBERON:0002363 ! dura mater +relationship: part_of UBERON:0010743 ! meningeal cluster + +[Term] +id: UBERON:0000418 +name: obsolete tubercle +is_obsolete: true + +[Term] +id: UBERON:0000420 +name: myoepithelium +def: "An epithelium consisting of myopethelial cells, which are contractile cells resembling smooth muscle cells that are present in glands, notably the mammary gland, and aid in secretion. This cell has long weaving dendritic processes containing myofilament[CL]." [CL:0000185, http://en.wikipedia.org/wiki/Myoepithelial_cell] +synonym: "myo-epithelium" EXACT [FMA:67805] +synonym: "myoepitheliocytus" RELATED LATIN [http://en.wikipedia.org/wiki/Myoepithelial_cell] +xref: BTO:0002308 +xref: FMA:67805 +xref: Myoepithelial:cell +is_a: UBERON:0000488 ! atypical epithelium + +[Term] +id: UBERON:0000423 +name: eccrine sweat gland +def: "A merocrine, unbranched, unbranched, coiled, tubular gland sweat gland. In humans, distributed over almost all of the body surface, and promote cooling by evaporation of their secretion." [http://en.wikipedia.org/wiki/Eccrine_sweat_gland, http://orcid.org/0000-0002-6601-2165] +subset: organ_slim +subset: pheno_slim +synonym: "eccrine gland" RELATED [FMA:59154] +synonym: "glandula sudorifera eccrina" EXACT LATIN [http://en.wikipedia.org/wiki/Eccrine_sweat_gland] +synonym: "glandula sudorifera merocrina" EXACT LATIN [http://en.wikipedia.org/wiki/Eccrine_sweat_gland] +synonym: "merocrine sweat gland" RELATED [] +xref: BTO:0002323 +xref: FMA:59154 +xref: GAID:945 +xref: http://en.wikipedia.org/wiki/Eccrine_sweat_gland +xref: http://linkedlifedata.com/resource/umls/id/C0013492 +xref: http://www.snomedbrowser.com/Codes/Details/361699008 +xref: MA:0003039 +xref: MESH:D004439 +xref: NCIT:C32490 +xref: UMLS:C0013492 {source="ncithesaurus:Eccrine_Sweat_Gland"} +is_a: UBERON:0001820 ! sweat gland +is_a: UBERON:0010243 {source="MGI:anna"} ! merocrine gland + +[Term] +id: UBERON:0000424 +name: gastric pit +alt_id: UBERON:0000425 +def: "Gastric pits are indentations in the stomach which denote entrances to the gastric glands. They are deeper in the pylorus than they are in the other parts of the stomach. The human stomach has several million of these pits." [http://en.wikipedia.org/wiki/Gastric_pits] +synonym: "foveola gastrica" RELATED [BTO:0002364] +synonym: "foveolae gastricae" EXACT PLURAL [FMA:76583, FMA:TA] +synonym: "foveolae gastricae" RELATED LATIN [http://en.wikipedia.org/wiki/Gastric_pits] +synonym: "gastric foveola" EXACT [FMA:62947] +xref: BTO:0002364 +xref: FMA:62947 +xref: Gastric:pits +xref: http://linkedlifedata.com/resource/umls/id/C0227203 +xref: http://www.snomedbrowser.com/Codes/Details/268426007 +xref: NCIT:C32659 +xref: UMLS:C0227203 {source="ncithesaurus:Gastric_Pit"} +is_a: UBERON:0002553 ! anatomical cavity +relationship: part_of UBERON:0001199 {source="BTO"} ! mucosa of stomach + +[Term] +id: UBERON:0000426 +name: extravillous trophoblast +def: "The outermost layer of trophoblast, produced by cytotrophoblast where there is direct contact with maternal decidua rather than blood. The EVT cells travel into the decidua, reacting with NK cells and invading maternal blood vessels feeding the placenta, softening the walls and replacing the lining with fetal tissue, a process called conversion." [BTO:0002366] +synonym: "intermediate trophoblast" EXACT [FMA:86561] +synonym: "interstitial trophoblast" RELATED [BTO:0002366] +xref: BTO:0002366 +xref: FMA:86561 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0000088 {source="BTO"} ! trophoblast + +[Term] +id: UBERON:0000427 +name: obsolete cytotrophoblastic cell +is_obsolete: true +consider: NCIT:C38575 + +[Term] +id: UBERON:0000428 +name: prostate epithelium +alt_id: UBERON:0002452 +def: "The prostate epithelium." [MP:0001168] +subset: pheno_slim +synonym: "epithelial tissue of prostate" EXACT [OBOL:automatic] +synonym: "epithelial tissue of prostate gland" EXACT [OBOL:automatic] +synonym: "epithelium of prostate" EXACT [OBOL:automatic] +synonym: "epithelium of prostate gland" EXACT [OBOL:automatic] +synonym: "epithelium of prostatic gland" EXACT [FMA:79643] +synonym: "prostate epithelial tissue" EXACT [OBOL:automatic] +synonym: "prostate gland epithelial tissue" EXACT [OBOL:automatic] +synonym: "prostate gland epithelium" EXACT [] +synonym: "prostatic epithelium" EXACT [FMA:66812] +synonym: "prostatic gland epithelium" EXACT [] +xref: BTO:0002397 +xref: CALOHA:TS-2065 +xref: EMAPA:35711 +xref: FMA:66812 +xref: FMA:79643 +xref: http://linkedlifedata.com/resource/umls/id/C1179826 +xref: MA:0001737 +xref: NCIT:C13103 +xref: UMLS:C1179826 {source="ncithesaurus:Prostatic_Epithelium"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0000485 ! simple columnar epithelium +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0012275 ! meso-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002367 ! prostate gland +relationship: part_of UBERON:0002367 ! prostate gland + +[Term] +id: UBERON:0000429 +name: enteric plexus +alt_id: UBERON:0012372 +def: "A plexus of autonomic nerve fibers within the wall of the digestive tube, and made up of the submucosal, myenteric, and subserosal plexuses; it contains visceral afferent fibers, sympathetic postganglionic fibers, parasympathetic preganglionic and postganglionic fibers, and parasympathetic postganglionic cell bodies." [BTO:0002437] +synonym: "enteric nerve plexus" EXACT [FMA:77597] +synonym: "intrinsic nerve plexus" EXACT [MA:0001147] +synonym: "plexus entericus" EXACT [BTO:0002437] +synonym: "plexus nervosus entericus" EXACT LATIN [FMA:77597, FMA:TA] +synonym: "sympathetic enteric nerve plexus" EXACT [FMA:77597] +xref: BTO:0002437 +xref: EMAPA:35446 +xref: FMA:77597 +xref: MA:0001147 +is_a: UBERON:0001816 ! autonomic nerve plexus +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0001810 ! nerve plexus +intersection_of: part_of UBERON:0002005 ! enteric nervous system +relationship: part_of UBERON:0002005 ! enteric nervous system + +[Term] +id: UBERON:0000430 +name: ventral intermediate nucleus of thalamus +def: "A nucleus medially located within the ventral nuclei of the thalamus." [BTO:0002469] +subset: vertebrate_core +synonym: "intermediate thalamic nuclei" RELATED PLURAL [ZFA:0000370] +synonym: "intermediate thalamic nucleus" RELATED [TAO:0000370] +synonym: "nucleus ventralis intermedius thalami" RELATED [BTO:0002469] +xref: BTO:0002469 +xref: EV:0100208 +xref: FMA:84347 +xref: TAO:0000370 +xref: ZFA:0000370 +is_a: UBERON:0015234 ! nucleus of ventral thalamus + +[Term] +id: UBERON:0000431 +name: ventral medial complex of thalamus +def: "A group of nuclei located in the medial portion of the ventral thalamic nuclei." [BTO:0002470] +synonym: "nuclei ventrales mediales thalami" RELATED LATIN [BTO:0002470] +synonym: "set of ventral medial nuclei of thalamus" RELATED [FMA:77795] +synonym: "ventral medial complex of thalamus" EXACT [FMA:77795] +synonym: "ventral medial nuclei of thalamus" EXACT [FMA:77795] +xref: BTO:0002470 +xref: FMA:77795 +is_a: UBERON:0010009 {source="FMA"} ! aggregate regional part of brain +relationship: part_of UBERON:0002776 {source="BTO-modified"} ! ventral nuclear group + +[Term] +id: UBERON:0000432 +name: endopeduncular nucleus +def: "A portion of the nucleus of ansa lenticularis located medial to the posterior limb of the internal capsule, along the course of the ansa lenticularis and the inferior thalamic peduncle or as a separate nucleus within the internal capsule adjacent to the medial GLOBUS PALLIDUS (NeuroNames, http://rprcsgi.rprc. washington.edu/neuronames/ (September 28, 1998)). In non-primates, the entopeduncular nucleus is analogous to both the medial globus pallidus and the entopeduncular nucleus of human." [MESH:A08.186.211.730.385.800.240] +comment: The term entopeduncular nucleus in human neuroanatomy refers to a portion of the nucleus of the ansa lenticularis described variously as located medial to the posterior limb of the internal capsule ( Riley-1943 ), along the course of the ansa lenticularis and the inferior thalamic peduncle ( Crosby-1962 ), or as a separate nucleus within the internal capsule adjacent to the medial segment of the globus pallidus ( Nomina-1983 ).[NN] +synonym: "entopeduncular nucleus" RELATED [] +synonym: "nucleus endopeduncularis" RELATED [BTO:0002475] +synonym: "nucleus entopeduncularis" RELATED [] +xref: BAMS:EN +xref: BTO:0002475 +xref: DHBA:13057 +xref: FMA:77691 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2284 +xref: http://www.snomedbrowser.com/Codes/Details/82705008 +xref: MESH:A08.186.211.730.385.800.240 +is_a: UBERON:0015234 ! nucleus of ventral thalamus +relationship: part_of UBERON:0009641 {source="NN"} ! ansa lenticularis + +[Term] +id: UBERON:0000433 +name: posterior paraventricular nucleus of thalamus +def: "The posterior of the two nuclei paraventriculares thalami." [BTO:0002456] +synonym: "caecal epithelium" RELATED [BTO:0002477] +synonym: "dorsal paraventricular nucleus of thalamus" EXACT [FMA:76961] +synonym: "nucleus paraventricularis posterior thalami" RELATED [BTO:0002477] +synonym: "nucleus paraventricularis posterior thalami" RELATED [BTO:0002456] +synonym: "posterior paraventricular nuclei" RELATED [BTO:0002456] +synonym: "posterior paraventricular nucleus of thalamus" RELATED [BTO:0002456] +synonym: "posterior paraventricular nucleus of the thalamus" RELATED [BAMS:PARP] +xref: BAMS:PARP +xref: BTO:0002456 +xref: FMA:76961 +xref: HBA:4536 +is_a: UBERON:0001920 ! paraventricular nucleus of thalamus +disjoint_from: UBERON:0000434 {source="lexical"} ! anterior paraventricular nucleus of thalamus + +[Term] +id: UBERON:0000434 +name: anterior paraventricular nucleus of thalamus +def: "The anterior of the two nuclei paraventriculares thalami." [BTO:0002455, Dorlands_Medical_Dictionary:MerckSource] +synonym: "anterior paraventricular nuclei" RELATED [BTO:0002455] +synonym: "anterior paraventricular nucleus" EXACT [BTO:0002455] +synonym: "anterior paraventricular nucleus of thalamus" RELATED [BTO:0002455] +synonym: "anterior paraventricular nucleus of the thalamus" RELATED [BAMS:PARA] +synonym: "anterior periventricular nucleus of the hypothalamus" RELATED [BAMS:PVa] +synonym: "nucleus paraventricularis anterior thalami" RELATED [BTO:0002478] +synonym: "nucleus paraventricularis anterior thalami" RELATED [BTO:0002455] +synonym: "periventricular hypothalamic nucleus, anterior part" RELATED [BAMS:PVa] +synonym: "ventral paraventricular nucleus of thalamus" EXACT [FMA:76962] +xref: BAMS:PARA +xref: BAMS:PVa +xref: BTO:0002455 +xref: DMBA:16400 +xref: FMA:76962 +xref: HBA:12906 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2928 +xref: MBA:30 +is_a: UBERON:0001920 ! paraventricular nucleus of thalamus +disjoint_from: UBERON:0002708 {source="lexical"} ! posterior periventricular nucleus + +[Term] +id: UBERON:0000435 +name: lateral tuberal nucleus +def: "Nerve cell nuclei situated ventrally in the intermediate hypothalamic region, mainly in the lateral hypothalamic area." [BTO:0002481] +synonym: "lateral tuberal hypothalamic nuclei" EXACT [FMA:62336] +synonym: "lateral tuberal nuclear complex" EXACT [BIRNLEX:1206] +synonym: "lateral tuberal nuclei" EXACT [FMA:62336] +synonym: "LTu" BROAD ABBREVIATION [BIRNLEX:1206, NIFSTD:NeuroNames_abbrevSource] +synonym: "nuclei tuberales laterales" RELATED [BTO:0002481] +synonym: "nucleus tuberis" RELATED LATIN [NeuroNames:428] +synonym: "nucleus tuberis hypothalami" RELATED LATIN [NeuroNames:428] +synonym: "nucleus tuberis lateralis" RELATED LATIN [NeuroNames:428] +xref: BAMS:LTu +xref: BIRNLEX:1206 +xref: BM:TU +xref: BTO:0002481 +xref: DHBA:10493 +xref: DMBA:16271 +xref: EV:0100240 +xref: FMA:62336 +xref: HBA:12915 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=428 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=428 {source="BIRNLEX:1206"} +xref: http://linkedlifedata.com/resource/umls/id/C0086527 +xref: MBA:614 +xref: UMLS:C0086527 {source="BIRNLEX:1206"} +is_a: UBERON:0006568 ! hypothalamic nucleus +relationship: part_of UBERON:0002430 ! lateral hypothalamic area + +[Term] +id: UBERON:0000437 +name: arachnoid barrier layer +def: "The arachnoid barrier layer is a part of the arachnoid meningeal layer. It is formed by tight junctions between the endothelial cells of cerebral capillaries in the arachnoid mater." [BTO:0002498] +xref: BTO:0002498 +xref: FMA:231559 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004923 {source="FMA"} ! organ component layer +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0000201 {source="cjm"} ! endothelial blood brain barrier +relationship: part_of UBERON:0002362 {source="FMA"} ! arachnoid mater + +[Term] +id: UBERON:0000438 +name: obsolete set of arachnoid trabecula +synonym: "Arachnoid trabeculae set" EXACT [FMA:77761] +synonym: "trabeculae arachnoideae" EXACT LATIN [FMA:77761, FMA:TA] +is_obsolete: true +consider: FMA:77761 + +[Term] +id: UBERON:0000439 +name: arachnoid trabecula +def: "The arachnoid trabeculae are delicate strands of connective tissue that loosely connect the two innermost layers of the meninges -- the arachnoid mater and the pia mater. They are found within the subarachnoid space where cerebrospinal fluid is also found. Embryologically, the trabeculae are the remnants of the common precursor that forms both the arachnoid and pial layers of the meninges." [http://en.wikipedia.org/wiki/Arachnoid_trabeculae] +synonym: "arachnoid trabeculae" RELATED PLURAL [] +synonym: "trabecula arachnoideum" RELATED LATIN [] +xref: Arachnoid:trabeculae +xref: BTO:0002500 +xref: FMA:83979 +is_a: UBERON:0000440 ! trabecula +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0000440 ! trabecula +intersection_of: part_of UBERON:0002362 ! arachnoid mater +relationship: part_of UBERON:0002362 ! arachnoid mater + +[Term] +id: UBERON:0000440 +name: trabecula +def: "A small, often microscopic, tissue element in the form of a small beam, strut or rod, generally having a mechanical function, and usually but not necessarily composed of dense collagenous tissue. On histological section, a trabecula can look like a septum, but in three dimensions they are topologically distinct, with trabeculae being roughly rod or pillar-shaped and septa being sheet-like. Trabeculae are usually composed of dense fibrous tissue, i.e. mainly of collagen, and in most cases provide mechanical strengthening or stiffening to a soft solid organ, such as the spleen. They can be composed of other materials, such as bone or muscle[WP]." [GO:0060343, http://en.wikipedia.org/wiki/Trabecula] +subset: grouping_class +subset: pheno_slim +xref: BTO:0002501 +xref: FMA:85273 +xref: http://en.wikipedia.org/wiki/Trabecula +is_a: UBERON:0000064 ! organ part +relationship: has_part UBERON:0002384 ! connective tissue + +[Term] +id: UBERON:0000442 +name: right testicular vein +def: "A vein that drains the left pampiniform plexus and empties into the left renal vein." [Dorlands_Medical_Dictionary:MerckSource] +synonym: "right spermatic vein" EXACT [MA:0002220] +synonym: "vena testicularis (adrenalis) dextra" EXACT [FMA:14341] +synonym: "vena testicularis dextra" RELATED [BTO:0002679] +synonym: "vena testicularis sinistra" RELATED [BTO:0002680] +xref: BTO:0002679 +xref: EMAPA:37383 {source="MA:th"} +xref: FMA:14341 +xref: http://www.snomedbrowser.com/Codes/Details/53500001 +xref: MA:0002220 +xref: NCIT:C52697 +is_a: UBERON:0001144 ! testicular vein +intersection_of: UBERON:0001144 ! testicular vein +intersection_of: drains UBERON:0004534 ! right testis +relationship: connected_to UBERON:0001142 ! left renal vein +relationship: drains UBERON:0004534 ! right testis +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0000443 +name: left testicular vein +def: "A vein that drains the right pampiniform plexus and empties into the inferior vena cava." [Dorlands_Medical_Dictionary:MerckSource] +synonym: "left spermatic vein" EXACT [MA:0002219] +synonym: "vena testicularis dextra" RELATED [BTO:0002679] +synonym: "vena testicularis sinistra" RELATED [BTO:0002680] +xref: BTO:0002680 +xref: EMAPA:37167 {source="MA:th"} +xref: FMA:14345 +xref: http://www.snomedbrowser.com/Codes/Details/90988008 +xref: MA:0002219 +xref: NCIT:C52696 +is_a: UBERON:0001144 ! testicular vein +intersection_of: UBERON:0001144 ! testicular vein +intersection_of: drains UBERON:0004533 ! left testis +relationship: drains UBERON:0004533 ! left testis +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0000444 +name: lymphoid follicle +def: "." [https://github.com/obophenotype/uberon/issues/6, https://github.com/obophenotype/uberon/issues/7] +synonym: "folliculus lymphaticus" RELATED [BTO:0002684] +synonym: "lymphatic follicle" RELATED [BTO:0002684] +synonym: "lymphatic nodule" RELATED [BTO:0002684] +synonym: "lymphoid nodule" EXACT [FMA:55222] +synonym: "nodular lymphoid tissue" EXACT [FMA:55222] +synonym: "nodulus lymphaticus" RELATED [BTO:0002684] +synonym: "nodulus lymphoideus" RELATED [BTO:0002684] +xref: BTO:0002684 +xref: FMA:55222 +xref: http://linkedlifedata.com/resource/umls/id/C0229654 +xref: http://www.snomedbrowser.com/Codes/Details/64626006 +xref: NCIT:C33040 +xref: UMLS:C0229654 {source="ncithesaurus:Lymphoid_Follicle"} +is_a: UBERON:0001744 {source="FMA"} ! lymphoid tissue +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan + +[Term] +id: UBERON:0000445 +name: habenular trigone +def: "The habenular trigone is a small depressed triangular area situated in front of the superior colliculus and on the lateral aspect of the posterior part of the taenia thalami. It contains a group of nerve cells termed the ganglion habenulC&. Fibers enter it from the stalk of the pineal body, and others, forming what is termed the habenular commissure, pass across the middle line to the corresponding ganglion of the opposite side. Most of its fibers are, however, directed downward and form a bundle, the fasciculus retroflexus of Meynert, which passes medial to the red nucleus, and, after decussating with the corresponding fasciculus of the opposite side, ends in the interpeduncular ganglion." [http://en.wikipedia.org/wiki/Habenular_trigone] +comment: superclass in BTO is thalamic nucleus, not present in most ontologies +synonym: "trigone of habenulae" RELATED [BTO:0002700] +synonym: "trigonum habenulae" RELATED LATIN [http://en.wikipedia.org/wiki/Habenular_trigone] +synonym: "trigonum habenulae" RELATED [BTO:0002700] +xref: BAMS:hbt +xref: BTO:0002700 +xref: FMA:74868 +xref: Habenular:trigone +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=293 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0001904 ! habenula + +[Term] +id: UBERON:0000446 +name: septum of telencephalon +def: "Gray matter structure located on the midline of the forebrain consisting of the septum pellucidum (in some species) and the septal nuclei (Heimer, 1996)." [BIRNLEX:963] +subset: pheno_slim +synonym: "area septalis" EXACT LATIN [FMA:61842, FMA:TA] +synonym: "massa praecommissuralis" RELATED LATIN [NeuroNames:255] +synonym: "Se" BROAD ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23375746] +synonym: "septal area" EXACT [FMA:61842] +synonym: "septal region" RELATED [BAMS:SEP] +synonym: "septum" BROAD [BIRNLEX:963] +synonym: "septum (NN)" EXACT [FMA:61842] +synonym: "septum pellucidum (BNA,PNA)" RELATED LATIN [NeuroNames:255] +synonym: "septum telencephali" RELATED LATIN [NeuroNames:255] +synonym: "telencephalon septum" EXACT [FMA:61842] +xref: BAMS:SA +xref: BAMS:SEP +xref: BAMS:Sep +xref: BAMS:Spt +xref: BIRNLEX:963 +xref: BM:Tel-Spt +xref: BTO:0002705 +xref: EMAPA:32837 +xref: FMA:61842 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=255 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=255 {source="BIRNLEX:963"} +xref: http://linkedlifedata.com/resource/umls/id/C0752060 +xref: MA:0000924 +xref: MESH:A08.186.211.577.750 +xref: UMLS:C0752060 {source="BIRNLEX:963"} +is_a: UBERON:0005401 ! cerebral hemisphere gray matter + +[Term] +id: UBERON:0000449 +name: obsolete decidual cell +is_obsolete: true +replaced_by: CL:2000002 +consider: BTO:0002770 +consider: FMA:86480 +consider: NCIT:C32429 +consider: UMLS:C1511740 {source="ncithesaurus:Decidual_Cell"} +consider: Wikipedia:Decidual_cells + +[Term] +id: UBERON:0000450 +name: corpus albicans +def: "White fibrous tissue that replaces the regressing corpus luteum in the human ovary in the latter half of pregnancy, or soon after ovulation when pregnancy does not supervene." [BTO:0002784] +synonym: "corpus albicans of ovary" EXACT [FMA:18620] +synonym: "corpus fibrosum" RELATED [BTO:0002784] +synonym: "corpus mamillare" RELATED [BTO:0002784] +synonym: "mamillary body" RELATED INCONSISTENT [BTO:0002784] +synonym: "mammillary body" RELATED INCONSISTENT [BTO:0002784] +xref: BTO:0002784 +xref: EMAPA:29888 +xref: FMA:18620 +xref: http://www.snomedbrowser.com/Codes/Details/258043001 +is_a: UBERON:0003982 {source="BTO"} ! mature ovarian follicle + +[Term] +id: UBERON:0000451 +name: prefrontal cortex +def: "The anterior part of the frontal lobes of the brain, lying in front of the motor and premotor areas.nnThis brain region has been implicated in planning complex cognitive behaviors, personality expression, decision making and moderating correct social behavior. The basic activity of this brain region is considered to be orchestration of thoughts and actions in accordance with internal goals.nnThe most typical psychological term for functions carried out by the pre-frontal cortex area is executive function. Executive function relates to abilities to differentiate among conflicting thoughts, determine good and bad, better and best, same and different, future consequences of current activities, working toward a defined goal, prediction of outcomes, expectation based on actions, and social 'control' (the ability to suppress urges that, if not suppressed, could lead to socially-unacceptable outcomes).nnMany authors have indicated an integral link between a person's personality and the functions of the prefrontal cortex. - definition adapted from Wikipedia" [NLXANAT:090801] +subset: efo_slim +synonym: "frontal association cortex" RELATED PENDING_REVIEW [MA:0000906] +synonym: "prefrontal association complex" RELATED [BTO:0002807] +synonym: "prefrontal association cortex" EXACT [FMA:224850] +xref: BAMS:FrA +xref: BTO:0002807 +xref: DHBA:10172 +xref: EFO:0001384 +xref: EMAPA:35356 +xref: FMA:224850 +xref: GAID:676 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1072 +xref: MA:0000906 +xref: MESH:A08.186.211.730.885.213.270.700 +xref: NLXANAT:090801 +xref: Prefrontal:cortex +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001870 ! frontal cortex + +[Term] +id: UBERON:0000453 +name: decidua basalis +def: "Area of uterine endometrium found between the implanted chorionic vesicle and the myometrium." [https://sourceforge.net/p/obo/mammalian-phenotype-requests/1599, MP:0012529] +subset: efo_slim +subset: pheno_slim +synonym: "basal decidua" RELATED [MGI:anna] +synonym: "decidua serotina" RELATED [BTO:0002819] +xref: BTO:0002819 +xref: EFO:0001918 +xref: EMAPA:35270 +xref: FMA:86477 +xref: http://linkedlifedata.com/resource/umls/id/C0230965 +xref: http://www.snomedbrowser.com/Codes/Details/362841006 +xref: MA:0002905 +xref: NCIT:C32426 +xref: UMLS:C0230965 {source="ncithesaurus:Decidua_Basalis"} +is_a: UBERON:0000478 ! extraembryonic structure +relationship: part_of UBERON:0002450 ! decidua + +[Term] +id: UBERON:0000454 +name: cerebral subcortex +def: "The layer located below the cerebral cortex that includes the forebrain, midbrain and hindbrain." [ncithesaurus:Cerebral_Subcortex] +subset: pheno_slim +synonym: "cerebral medulla" EXACT [FMA:242188] +synonym: "subcortex" RELATED [BTO:0002858] +xref: BTO:0002858 +xref: FMA:242188 +xref: http://linkedlifedata.com/resource/umls/id/C0815008 +xref: NCIT:C98712 +xref: UMLS:C0815008 {source="ncithesaurus:Cerebral_Subcortex"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0000955 ! brain + +[Term] +id: UBERON:0000456 +name: secretion of exocrine gland +alt_id: UBERON:0006540 +def: "A portion of organism substance that is produced by exocrine glands." [http://orcid.org/0000-0002-6601-2165] +synonym: "bodily secretion" EXACT [MESH:D012634] +synonym: "exocrine gland fluid" RELATED [] +synonym: "exocrine gland fluid or secretion" RELATED [] +synonym: "exocrine gland fluid/secretion" EXACT [MA:0002504] +synonym: "exocrine gland secretion" RELATED [] +synonym: "external secretion" RELATED [BTO:0002977] +synonym: "secreted substance" EXACT [] +synonym: "secretion" BROAD [FMA:9675] +xref: AEO:0001005 +xref: BTO:0002977 +xref: BTO:0002979 +xref: EMAPA:36535 +xref: FMA:9675 +xref: galen:Secretion +xref: http://linkedlifedata.com/resource/umls/id/C1516992 +xref: MA:0002504 +xref: MESH:D012634 +xref: NCIT:C34062 +xref: UMLS:C1516992 {source="ncithesaurus:Exocrine_Gland_Fluid_or_Secretion"} +is_a: UBERON:0000463 ! organism substance +intersection_of: UBERON:0000463 ! organism substance +intersection_of: produced_by UBERON:0002365 ! exocrine gland +relationship: produced_by UBERON:0002365 ! exocrine gland + +[Term] +id: UBERON:0000457 +name: cavernous artery +def: "Any of several small branches of the internal carotid artery that supply the trigeminal ganglion and the walls of the cavernous and petrosal sinuses." [BTO:0002996] +synonym: "cavernous branch of cavernous part of internal carotid artery" EXACT [FMA:70527] +synonym: "ramus sinus cavernosi (pars cavernosa) (arteria carotis interna)" EXACT LATIN [FMA:70527, FMA:TA] +xref: BTO:0002996 +xref: FMA:70527 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0001532 ! internal carotid artery +intersection_of: supplies UBERON:0001675 ! trigeminal ganglion +relationship: branching_part_of UBERON:0001532 ! internal carotid artery +relationship: part_of UBERON:0001532 ! internal carotid artery +relationship: supplies UBERON:0001675 ! trigeminal ganglion + +[Term] +id: UBERON:0000458 +name: endocervix +def: "The region of the opening of the uterine cervix into the uterine cavity." [BTO:0003002] +xref: BTO:0003002 +xref: FMA:86485 +xref: http://linkedlifedata.com/resource/umls/id/C0227837 +xref: http://www.snomedbrowser.com/Codes/Details/264460007 +xref: NCIT:C12309 +xref: UMLS:C0227837 {source="ncithesaurus:Endocervix"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0000064 ! organ part +intersection_of: proximalmost_part_of UBERON:0000002 ! uterine cervix +relationship: has_part UBERON:0000485 ! simple columnar epithelium +relationship: part_of UBERON:0000002 ! uterine cervix +relationship: proximalmost_part_of UBERON:0000002 ! uterine cervix + +[Term] +id: UBERON:0000459 +name: uterine wall +def: "An anatomical wall that is part of a uterus [Automatically generated definition]." [OBOL:automatic] +synonym: "anatomical wall of uterus" EXACT [OBOL:automatic] +synonym: "uterus anatomical wall" EXACT [OBOL:automatic] +synonym: "uterus wall" EXACT [OBOL:automatic] +synonym: "wall of uterus" EXACT [OBOL:automatic] +xref: BTO:0003083 +xref: FMA:17560 +xref: http://www.snomedbrowser.com/Codes/Details/245485002 +is_a: UBERON:0000060 ! anatomical wall +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0000995 ! uterus +relationship: part_of UBERON:0000995 ! uterus + +[Term] +id: UBERON:0000460 +name: major vestibular gland +def: "the paired glands located slightly posterior and to the left and right of the opening of the vagina in the superficial perineal pouch in females; they secrete mucus to lubricate the vagina and are homologous to bulbourethral (Cowper's) glands in males" [MGI:anna, MP:0011787] +subset: organ_slim +subset: pheno_slim +synonym: "Bartholin gland" EXACT [] +synonym: "Bartholin's gland" EXACT [FMA:9598] +synonym: "Duverney's gland" RELATED [FMA:9598] +synonym: "glandula vestibularis major" RELATED [BTO:0003115] +synonym: "greater vestibular gland" RELATED [MA:0002936] +synonym: "greater vestibular glands of Bartholin" RELATED [http://en.wikipedia.org/wiki/Bartholin%27s_gland] +synonym: "Tiedemann's gland" EXACT [FMA:9598] +synonym: "vulvovaginal gland" EXACT [FMA:9598] +xref: Bartholin's:gland +xref: BTO:0003115 +xref: EMAPA:36429 +xref: FMA:9598 +xref: GAID:384 +xref: http://www.snomedbrowser.com/Codes/Details/362244005 +xref: MA:0002936 +xref: MESH:D001472 +xref: NCIT:C12675 +is_a: UBERON:0000414 {source="MP"} ! mucous gland +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0011826 ! vestibular gland +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:0019319 ! exocrine gland of integumental system +disjoint_from: UBERON:0010048 ! Duvernoy's gland +relationship: develops_from UBERON:0000164 {source="Wikipedia"} ! primitive urogenital sinus +relationship: in_lateral_side_of UBERON:0005056 {source="FMA-abduced-lr"} ! external female genitalia +relationship: sexually_homologous_to UBERON:0002366 {source="Wikipedia"} ! bulbo-urethral gland + +[Term] +id: UBERON:0000461 +name: minor vestibular gland +def: "Small mucous glands opening upon the vestibular mucous membrane between the urethral and the vaginal orifice." [BTO:0003116] +subset: organ_slim +synonym: "glandula vestibular minor" EXACT [FMA:20019] +synonym: "glandula vestibulares minor" RELATED [BTO:0003116] +synonym: "Guerin's gland" RELATED [BTO:0003116] +synonym: "Guérin's gland" RELATED [] +synonym: "lesser vestibular gland" EXACT [FMA:20019] +synonym: "paraurethral gland" RELATED [BTO:0003116] +synonym: "periurethral gland" RELATED [BTO:0003116] +synonym: "Schueller's gland" RELATED [BTO:0003116] +synonym: "Skene gland" RELATED INCONSISTENT [] +synonym: "Skene's gland" RELATED INCONSISTENT [BTO:0003116] +synonym: "urethral gland of female urethra" RELATED [BTO:0003116] +xref: BTO:0003116 +xref: FMA:20019 +xref: http://www.snomedbrowser.com/Codes/Details/279869001 +xref: NCIT:C61122 +is_a: UBERON:0010145 {source="ncithesaurus"} ! paraurethral gland +is_a: UBERON:0010187 ! female urethral gland +is_a: UBERON:0011826 ! vestibular gland + +[Term] +id: UBERON:0000462 +name: obsolete villus +is_obsolete: true + +[Term] +id: UBERON:0000463 +name: organism substance +def: "Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body." [http://orcid.org/0000-0001-9114-8737] +subset: pheno_slim +subset: upper_level +synonym: "body fluid or substance" EXACT [MA:0002450] +synonym: "body substance" EXACT [FMA:9669] +synonym: "organism substance" EXACT [CARO:0000004] +synonym: "portion of body substance" EXACT [FMA:9669] +synonym: "portion of organism substance" EXACT [ZFA:0001487] +xref: AAO:0010839 +xref: AEO:0000004 +xref: BILA:0000004 +xref: CALOHA:TS-2101 +xref: CARO:0000004 +xref: EHDAA2:0003004 +xref: EMAPA:35178 +xref: FBbt:00007019 +xref: FMA:9669 +xref: galen:BodySubstance +xref: HAO:0000004 +xref: MA:0002450 +xref: NCIT:C13236 +xref: SPD:0000008 +xref: TAO:0001487 +xref: TGMA:0001824 +xref: VHOG:0001726 +xref: XAO:0004001 +xref: ZFA:0001487 +is_a: UBERON:0000465 ! material anatomical entity +relationship: part_of UBERON:0000468 {notes="this relationship may be too strong and may be weakened in future"} ! multicellular organism + +[Term] +id: UBERON:0000464 +name: anatomical space +def: "Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures." [http://orcid.org/0000-0001-9114-8737] +subset: upper_level +synonym: "anatomical spaces" RELATED PLURAL [ZFA:0001643] +synonym: "lumen" BROAD [] +synonym: "lumen space" EXACT [] +synonym: "space" BROAD [] +xref: AAO:0010110 +xref: AEO:0000005 +xref: BILA:0000005 +xref: CARO:0000005 +xref: EHDAA2:0003005 +xref: FBbt:00007017 +xref: FMA:5897 +xref: HAO:0000005 +xref: http://linkedlifedata.com/resource/umls/id/C0524461 +xref: NCIT:C94478 +xref: TAO:0001668 +xref: TGMA:0001825 +xref: UMLS:C0524461 {source="ncithesaurus:Lumen_Space"} +xref: VHOG:0001728 +xref: XAO:0003190 +xref: ZFA:0001643 +is_a: UBERON:0000466 ! immaterial anatomical entity +disjoint_from: UBERON:0006800 ! anatomical line +relationship: surrounded_by UBERON:0000061 ! anatomical structure + +[Term] +id: UBERON:0000465 +name: material anatomical entity +def: "Anatomical entity that has mass." [http://orcid.org/0000-0001-9114-8737] +subset: upper_level +xref: AAO:0010264 +xref: AEO:0000006 +xref: BILA:0000006 +xref: CARO:0000006 +xref: EHDAA2:0003006 +xref: FBbt:00007016 +xref: FMA:67165 +xref: HAO:0000006 +xref: TAO:0001836 +xref: TGMA:0001826 +xref: VHOG:0001721 +is_a: UBERON:0001062 ! anatomical entity + +[Term] +id: UBERON:0000466 +name: immaterial anatomical entity +def: "Anatomical entity that has no mass." [http://orcid.org/0000-0001-9114-8737] +subset: upper_level +synonym: "immaterial physical anatomical entity" EXACT [FMA:67112] +xref: AAO:0010265 +xref: AEO:0000007 +xref: BILA:0000007 +xref: CARO:0000007 +xref: EHDAA2:0003007 +xref: FBbt:00007015 +xref: FMA:67112 +xref: HAO:0000007 +xref: TAO:0001835 +xref: TGMA:0001827 +xref: VHOG:0001727 +is_a: UBERON:0001062 ! anatomical entity + +[Term] +id: UBERON:0000467 +name: anatomical system +def: "Multicellular, connected anatomical structure that has multiple organs as parts and whose parts work together to achieve some shared function." [CARO:0000011] +subset: pheno_slim +subset: uberon_slim +subset: upper_level +synonym: "anatomical systems" RELATED PLURAL [ZFA:0001439] +synonym: "body system" EXACT [BIRNLEX:14] +synonym: "connected anatomical system" EXACT [CARO:0000011] +synonym: "organ system" EXACT [] +synonym: "system" BROAD [GO:0048731] +xref: AAO:0000007 +xref: AEO:0000011 +xref: BILA:0000011 +xref: BIRNLEX:14 +xref: BSA:0000049 +xref: CALOHA:TS-2088 +xref: CARO:0000011 +xref: EHDAA2:0003011 +xref: EHDAA:392 +xref: EMAPA:16103 +xref: EV:0100000 +xref: FBbt:00004856 +xref: FMA:7149 +xref: galen:AnatomicalSystem +xref: HAO:0000011 +xref: http://linkedlifedata.com/resource/umls/id/C0460002 +xref: http://www.snomedbrowser.com/Codes/Details/278195005 +xref: MA:0000003 +xref: NCIT:C12919 +xref: OpenCyc:Mx4rCWM0QCtDEdyAAADggVbxzQ +xref: Organ:system +xref: TAO:0001439 +xref: TGMA:0001831 +xref: UMLS:C0460002 {source="ncithesaurus:Organ_System"} +xref: VHOG:0001725 +xref: WBbt:0005746 +xref: WBbt:0005763 +xref: XAO:0003002 +xref: ZFA:0001439 +is_a: UBERON:0000061 ! anatomical structure +relationship: existence_starts_during_or_after UBERON:0000111 ! organogenesis stage +relationship: has_part UBERON:0000062 ! organ +relationship: part_of UBERON:0000468 ! multicellular organism +relationship: seeAlso EHDAA2:0001330 + +[Term] +id: UBERON:0000468 +name: multicellular organism +def: "Anatomical structure that is an individual member of a species and consists of more than one cell." [CARO:0000012, http://en.wikipedia.org/wiki/Multi-cellular_organism, http://orcid.org/0000-0001-9114-8737] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: upper_level +synonym: "animal" NARROW [BTO:0000042] +synonym: "body" RELATED [AEO:0000103, BIRNLEX:18, FMA:256135, NCIT:C13041] +synonym: "Koerper" RELATED [BTO:0001489] +synonym: "multi-cellular organism" EXACT [CARO:0000012] +synonym: "organism" BROAD [FBbt:00000001, VHOG:0000671, WBbt:0007833] +synonym: "whole body" RELATED [BTO:0001489] +synonym: "whole organism" RELATED [FBbt:00000001] +xref: AAO:0010026 +xref: AEO:0000191 +xref: BILA:0000012 +xref: BIRNLEX:18 +xref: BSA:0000038 +xref: BTO:0000042 +xref: CARO:0000012 +xref: EFO:0002906 +xref: EHDAA2:0003103 +xref: EHDAA2:0003191 +xref: EHDAA:1 +xref: EMAPA:25765 +xref: EV:0100016 +xref: FBbt:00000001 +xref: FMA:256135 +xref: galen:Organism +xref: HAO:0000012 +xref: http://www.snomedbrowser.com/Codes/Details/243928005 +xref: Multi-cellular:organism +xref: NCIT:C13041 +xref: ncithesaurus:Whole_Organism +xref: TADS:0000001 +xref: TAO:0001094 +xref: TGMA:0001832 +xref: VHOG:0000671 +xref: WBbt:0007833 +xref: XAO:0003004 +xref: ZFA:0001094 +is_a: UBERON:0010000 ! multicellular anatomical structure + +[Term] +id: UBERON:0000470 +name: obsolete cell part +def: "Anatomical structure that is a direct part of the cell." [http://orcid.org/0000-0001-9114-8737] +subset: upper_level +synonym: "cell component" RELATED [CARO:0000014] +is_obsolete: true +consider: AAO:0010271 +consider: BILA:0000014 +consider: CARO:0000014 +consider: FBbt:00007012 +consider: FMA:86454 +consider: GO:0044464 +consider: HAO:0000014 +consider: NCIT:C34070 +consider: NIF_Subcellular:sao-1337158144 +consider: OpenCyc:Mx4rwQwkcZwpEbGdrcN5Y29ycA +consider: TGMA:0001834 +consider: UMLS:C1178969 {source="ncithesaurus:Cell_Part"} + +[Term] +id: UBERON:0000471 +name: compound organ component +def: "Multi-tissue structure that is part of a compound organ." [CARO:0000019, http://orcid.org/0000-0001-9114-8737] +subset: upper_level +synonym: "compound organ components" RELATED PLURAL [ZFA:0001489] +xref: AAO:0010017 +xref: AEO:0000019 +xref: BILA:0000019 +xref: CARO:0000019 +xref: EHDAA2:0003019 +xref: HAO:0000019 +xref: TAO:0001489 +xref: TGMA:0001835 +xref: XAO:0003039 +xref: ZFA:0001489 +is_a: UBERON:0000481 ! multi-tissue structure +relationship: part_of UBERON:0003103 ! compound organ + +[Term] +id: UBERON:0000472 +name: simple organ +def: "Multi-tissue structure that is not part of a compound organ." [CARO:0000021, http://orcid.org/0000-0001-9114-8737] +subset: upper_level +synonym: "simple organs" RELATED PLURAL [ZFA:0001492] +xref: AAO:0010051 +xref: AEO:0000190 +xref: BILA:0000021 +xref: CARO:0000021 +xref: EHDAA2:0003190 +xref: HAO:0000021 +xref: TAO:0001492 +xref: TGMA:0001836 +xref: XAO:0003038 +xref: ZFA:0001492 +is_a: UBERON:0000062 ! organ + +[Term] +id: UBERON:0000473 +name: testis +alt_id: UBERON:0002117 +def: "A gonad of a male animal. A gonad produces and releases sperm." [http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "gonad of male genitalia" EXACT [OBOL:automatic] +synonym: "gonad of male reproductive system" EXACT [OBOL:automatic] +synonym: "male gonad" EXACT [OBOL:automatic] +synonym: "orchis" RELATED [BTO:0001363] +synonym: "testes" RELATED PLURAL [] +synonym: "testicle" EXACT [FMA:7210] +synonym: "testiculus" RELATED LATIN [BTO:0001363] +xref: AAO:0000606 +xref: BILA:0000124 +xref: BSA:0000085 +xref: BTO:0001363 +xref: CALOHA:TS-1030 +xref: EFO:0000984 +xref: EHDAA2:0002007 +xref: EHDAA:8146 +xref: EMAPA:17972 +xref: EV:0100102 +xref: FBbt:00004928 +xref: FMA:7210 +xref: GAID:396 +xref: galen:Testis +xref: HAO:0001007 +xref: http://en.wikipedia.org/wiki/Testis +xref: http://linkedlifedata.com/resource/umls/id/C0039597 +xref: http://www.snomedbrowser.com/Codes/Details/181431007 +xref: MA:0000411 +xref: MAT:0000132 +xref: MESH:D013737 +xref: MIAA:0000132 +xref: NCIT:C12412 +xref: OpenCyc:Mx4rvVjM25wpEbGdrcN5Y29ycA +xref: TAO:0000598 +xref: UMLS:C0039597 {source="ncithesaurus:Testis"} +xref: VHOG:0000252 +xref: WBbt:0006794 +xref: XAO:0000157 +xref: ZFA:0000598 +is_a: UBERON:0000991 ! gonad +is_a: UBERON:0003135 ! male reproductive organ +intersection_of: UBERON:0000991 ! gonad +intersection_of: part_of UBERON:0000079 ! male reproductive system +disjoint_from: UBERON:0000992 ! ovary +disjoint_from: UBERON:0009117 ! indifferent gonad +relationship: develops_from UBERON:0009117 ! indifferent gonad + +[Term] +id: UBERON:0000474 +name: female reproductive system +def: "The organs and associated structures associated with bearing offspring in a female animal." [http://en.wikipedia.org/wiki/Female_genitalia, http://orcid.org/0000-0002-6601-2165, MP:0001119] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "female genital system" RELATED [] +synonym: "female genital tract" RELATED [] +synonym: "female genitalia" RELATED [] +synonym: "female genitals" RELATED PLURAL [XAO:0000156] +synonym: "female organism genitalia" EXACT [OBOL:automatic] +synonym: "female organism reproductive system" EXACT [OBOL:automatic] +synonym: "female reproductive tract" RELATED [MA:0000381] +synonym: "genitalia of female organism" EXACT [OBOL:automatic] +synonym: "gynaecological tissue" RELATED [BTO:0000083] +synonym: "reproductive system of female organism" EXACT [OBOL:automatic] +synonym: "systema genitale femininum" RELATED [BTO:0000083] +xref: BTO:0000083 +xref: CALOHA:TS-1303 +xref: EFO:0000969 +xref: EHDAA2:0000506 +xref: EHDAA:8116 +xref: EMAPA:17959 +xref: EV:0100110 +xref: FBbt:00004864 +xref: Female:genitalia +xref: FMA:45663 +xref: GAID:364 +xref: HAO:0000324 +xref: http://linkedlifedata.com/resource/umls/id/C0700038 +xref: http://www.snomedbrowser.com/Codes/Details/361386004 +xref: MA:0000381 +xref: MESH:D005836 +xref: MIAA:0000028 +xref: NCIT:C12402 +xref: OpenCyc:Mx4rvVipTZwpEbGdrcN5Y29ycA +xref: TGMA:0000635 +xref: UMLS:C0700038 {source="ncithesaurus:Female_Reproductive_System"} +xref: VHOG:0000726 +xref: WBbt:0006748 +xref: WikipediaCategory:Female_reproductive_system +xref: XAO:0000156 +is_a: UBERON:0000990 ! reproductive system +intersection_of: UBERON:0000990 ! reproductive system +intersection_of: part_of UBERON:0003100 ! female organism +relationship: part_of UBERON:0003100 ! female organism + +[Term] +id: UBERON:0000475 +name: organism subdivision +def: "Anatomical structure which is a subdivision of a whole organism, consisting of components of multiple anatomical systems, largely surrounded by a contiguous region of integument." [CARO:0000032, CARO:DOS, http://orcid.org/0000-0001-9114-8737] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: upper_level +synonym: "anatomic region" EXACT [MA:0002433] +synonym: "body part" RELATED [] +synonym: "body region" RELATED [FMA:7153] +synonym: "cardinal body part" RELATED [FMA:7153] +xref: AAO:0010053 +xref: AEO:0000032 +xref: BILA:0000032 +xref: BIRNLEX:7 +xref: Body:part +xref: CALOHA:TS-2084 +xref: CARO:0000032 +xref: EFO:0000808 +xref: EHDAA2:0003032 +xref: EMAPA:36031 +xref: FBbt:00007009 +xref: FMA:7153 +xref: galen:BodyPart +xref: HAO:0000032 +xref: http://linkedlifedata.com/resource/umls/id/C0229962 +xref: MA:0002433 +xref: MAT:0000293 +xref: MESH:D001829 +xref: MIAA:0000293 +xref: NCIT:C32221 +xref: OpenCyc:Mx4rvViAHJwpEbGdrcN5Y29ycA +xref: TAO:0001308 +xref: TGMA:0001840 +xref: UMLS:C0229962 {source="ncithesaurus:Body_Part"} +xref: VHOG:0001758 +xref: XAO:0003013 +xref: ZFA:0001308 +is_a: UBERON:0010000 {source="CARO"} ! multicellular anatomical structure +relationship: part_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0000476 +name: acellular anatomical structure +def: "Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue." [http://orcid.org/0000-0001-9114-8737] +subset: vertebrate_core +synonym: "acellular anatomical structures" RELATED PLURAL [ZFA:0000382] +xref: AAO:0010268 +xref: AEO:0000040 +xref: BILA:0000040 +xref: CARO:0000040 +xref: EHDAA2:0003040 +xref: FBbt:00007013 +xref: FMA:63863 +xref: HAO:0000040 +xref: TAO:0000382 +xref: TGMA:0001841 +xref: XAO:0003162 +xref: ZFA:0000382 +is_a: UBERON:0000061 ! anatomical structure +disjoint_from: UBERON:0010000 {source="CARO"} ! multicellular anatomical structure + +[Term] +id: UBERON:0000477 +name: anatomical cluster +def: "Anatomical group that has its parts adjacent to one another." [http://orcid.org/0000-0001-9114-8737] +subset: upper_level +xref: AAO:0010009 +xref: AEO:0000041 +xref: BILA:0000041 +xref: CARO:0000041 +xref: EHDAA2:0003041 +xref: FBbt:00007277 +xref: FMA:49443 +xref: HAO:0000041 +xref: TADS:0000605 +xref: TAO:0001478 +xref: TGMA:0001842 +xref: VHOG:0001737 +xref: XAO:0003160 +xref: ZFA:0001478 +is_a: UBERON:0001062 ! anatomical entity + +[Term] +id: UBERON:0000478 +name: extraembryonic structure +def: "A multicellular anatomical structure that is associated with an embryo and derived from the zygote from which it develops, but which does not contribute to the embryo proper or to structures that are part of the same organism after embryogenesis." [CARO:DOS, http://orcid.org/0000-0001-9114-8737, https://cedar.bio.indiana.edu/trac/env/ontologies/ticket/279] +comment: see also conceptus extraembryonic component in EHDAA2. +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "extra-embryonic structure" EXACT [] +synonym: "extraembryonic structures" RELATED PLURAL [ZFA:0000020] +synonym: "extraembryonic tissue" RELATED [] +xref: AAO:0010020 +xref: AEO:0000042 +xref: BILA:0000042 +xref: CALOHA:TS-2119 +xref: CARO:0000042 +xref: EHDAA2:0003042 +xref: EHDAA:46 +xref: FBbt:00005835 +xref: FMA:85537 +xref: HAO:0000042 +xref: http://linkedlifedata.com/resource/umls/id/C1282438 +xref: http://www.snomedbrowser.com/Codes/Details/314908006 +xref: NCIT:C34055 +xref: TAO:0000020 +xref: TGMA:0001843 +xref: UMLS:C1282438 {source="ncithesaurus:Extraembryonic_Structure"} +xref: VHOG:0000292 +xref: XAO:0004005 +xref: ZFA:0000020 +is_a: UBERON:0005423 ! developing anatomical structure +intersection_of: UBERON:0005423 ! developing anatomical structure +intersection_of: part_of UBERON:0016887 ! entire extraembryonic component +relationship: existence_starts_and_ends_during UBERON:0000068 ! embryo stage +relationship: part_of UBERON:0016887 ! entire extraembryonic component + +[Term] +id: UBERON:0000479 +name: tissue +def: "Multicellular anatomical structure that consists of many cells of one or a few types, arranged in an extracellular matrix such that their long-range organisation is at least partly a repetition of their short-range organisation." [CARO:0000043] +subset: pheno_slim +subset: upper_level +synonym: "portion of tissue" EXACT [CARO:0000043] +synonym: "simple tissue" NARROW [AEO:0000043] +synonym: "tissue portion" EXACT [] +xref: AAO:0000607 +xref: AAO:0010054 +xref: AEO:0000043 +xref: BILA:0000043 +xref: BIRNLEX:19 +xref: CALOHA:TS-2090 +xref: CARO:0000043 +xref: EHDAA2:0003043 +xref: EMAPA:35868 +xref: FBbt:00007003 +xref: FMA:9637 +xref: galen:Tissue +xref: HAO:0000043 +xref: http://linkedlifedata.com/resource/umls/id/C0040300 +xref: MA:0003002 +xref: MESH:D014024 +xref: NCIT:C12801 +xref: TAO:0001477 +xref: TGMA:0001844 +xref: UMLS:C0040300 {source="ncithesaurus:Tissue"} +xref: VHOG:0001757 +xref: WBbt:0005729 +xref: XAO:0003040 +xref: ZFA:0001477 +is_a: UBERON:0010000 {source="CARO"} ! multicellular anatomical structure +relationship: part_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0000480 +name: anatomical group +def: "Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue." [CARO:0000054, http://orcid.org/0000-0001-9114-8737] +subset: upper_level +xref: AAO:0010008 +xref: AEO:0000054 +xref: BILA:0000054 +xref: CARO:0000054 +xref: EHDAA2:0003054 +xref: FBbt:00007276 +xref: HAO:0000054 +xref: TAO:0001512 +xref: TGMA:0001846 +xref: VHOG:0001724 +xref: XAO:0003001 +xref: ZFA:0001512 +is_a: UBERON:0000061 ! anatomical structure +relationship: part_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0000481 +name: multi-tissue structure +def: "Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types." [CARO:0000055, http://orcid.org/0000-0001-9114-8737] +subset: upper_level +synonym: "multi-tissue structures" RELATED PLURAL [ZFA:0001488] +xref: AAO:0010048 +xref: AEO:0000055 +xref: BILA:0000055 +xref: CARO:0000055 +xref: EHDAA2:0003055 +xref: FBbt:00007010 +xref: HAO:0000055 +xref: TAO:0001488 +xref: TGMA:0001847 +xref: VHOG:0001762 +xref: XAO:0003037 +xref: ZFA:0001488 +is_a: UBERON:0010000 {source="CARO"} ! multicellular anatomical structure +relationship: has_part UBERON:0000479 ! tissue + +[Term] +id: UBERON:0000482 +name: basal lamina of epithelium +def: "Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue." [http://orcid.org/0000-0001-9114-8737] +subset: uberon_slim +subset: vertebrate_core +synonym: "basal lamina" RELATED [CARO:0000065] +synonym: "basal lamina of connective tissue" EXACT [FMA:62918] +synonym: "basal laminae" RELATED PLURAL [VHOG:0001592] +synonym: "lamina basalis" RELATED LATIN [http://en.wikipedia.org/wiki/Basal_lamina] +xref: AAO:0010269 +xref: AEO:0000065 +xref: Basal:lamina +xref: BILA:0000065 +xref: CARO:0000065 +xref: EHDAA2:0003065 +xref: FMA:62918 +xref: HAO:0000065 +xref: http://linkedlifedata.com/resource/umls/id/C0085872 +xref: MESH:D001485 +xref: NCIT:C32186 +xref: NIF_Subcellular:sao1397492660 +xref: TAO:0001485 +xref: TGMA:0001850 +xref: UMLS:C0085872 {source="ncithesaurus:Basal_Lamina"} +xref: VHOG:0001592 +xref: WBbt:0005756 +xref: XAO:0003163 +xref: ZFA:0001485 +is_a: UBERON:0005764 {source="FMA"} ! acellular membrane +relationship: part_of UBERON:0005769 {source="FMA"} ! basement membrane of epithelium + +[Term] +id: UBERON:0000483 +name: epithelium +def: "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. Examples: simple squamous epithelium, glandular cuboidal epithelium, transitional epithelium, myoepithelium[CARO]." [http://en.wikipedia.org/wiki/Epithelium, http://orcid.org/0000-0001-9114-8737] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "epithelial tissue" EXACT [] +synonym: "portion of epithelium" EXACT [FMA:9639] +xref: AAO:0000144 +xref: AAO:0010055 +xref: AEO:0000066 +xref: BILA:0000066 +xref: BTO:0000416 +xref: CALOHA:TS-0288 +xref: CARO:0000066 +xref: EHDAA2:0003066 +xref: EMAPA:32738 +xref: FBbt:00007005 +xref: FMA:9639 +xref: GAID:402 +xref: HAO:0000066 +xref: http://en.wikipedia.org/wiki/Epithelium +xref: http://linkedlifedata.com/resource/umls/id/C0014609 +xref: http://www.snomedbrowser.com/Codes/Details/31610004 +xref: MA:0003060 +xref: MESH:D004848 +xref: NCIT:C12710 +xref: TAO:0001486 +xref: UMLS:C0014609 {source="ncithesaurus:Epithelium"} +xref: VHOG:0000387 +xref: XAO:0003045 +xref: ZFA:0001486 +is_a: UBERON:0000479 ! tissue +union_of: UBERON:0000486 ! multilaminar epithelium +union_of: UBERON:0000490 ! unilaminar epithelium +relationship: has_part UBERON:0005769 ! basement membrane of epithelium + +[Term] +id: UBERON:0000484 +name: simple cuboidal epithelium +def: "Unilaminar epithelium that consists of a single layer of cuboidal cells." [http://en.wikipedia.org/wiki/Simple_cuboidal_epithelium, http://orcid.org/0000-0001-9114-8737] +subset: uberon_slim +subset: vertebrate_core +synonym: "epithelium simplex cuboideum" EXACT [] +synonym: "simple cuboidal epithelia" RELATED PLURAL [ZFA:0001497] +xref: AAO:0010064 +xref: AEO:0000067 +xref: BILA:0000067 +xref: CARO:0000067 +xref: EHDAA2:0003067 +xref: FMA:45566 +xref: HAO:0000067 +xref: http://en.wikipedia.org/wiki/Simple_cuboidal_epithelium +xref: http://linkedlifedata.com/resource/umls/id/C0836134 +xref: NCIT:C33553 +xref: TAO:0001497 +xref: UMLS:C0836134 {source="ncithesaurus:Simple_Cuboidal_Epithelium"} +xref: XAO:0004009 +xref: ZFA:0001497 +is_a: UBERON:0000490 ! unilaminar epithelium +is_a: UBERON:0010077 ! cuboidal epithelium + +[Term] +id: UBERON:0000485 +name: simple columnar epithelium +def: "Unilaminar epithelium, which consists of a single layer of columnar cells. Examples: ciliated columnar epithelium, gastric epithelium, microvillus columnar epithelium.[FMA]" [FMA:FMA, http://en.wikipedia.org/wiki/Simple_columnar_epithelium, http://orcid.org/0000-0001-9114-8737] +subset: uberon_slim +subset: vertebrate_core +synonym: "columnar epithelium" BROAD [EHDAA2:0003068] +synonym: "columnar epithlium" BROAD [AEO:0000068] +synonym: "epithelium simplex columnare" EXACT [] +synonym: "simple columnar epithelia" RELATED PLURAL [ZFA:0001496] +synonym: "simple columnar epithelium" EXACT [] +xref: AAO:0010063 +xref: AEO:0000068 +xref: BILA:0000068 +xref: CARO:0000068 +xref: EHDAA2_RETIRED:0003068 +xref: FBbt:00007027 +xref: FMA:45567 +xref: HAO:0000068 +xref: http://en.wikipedia.org/wiki/Simple_columnar_epithelium +xref: http://linkedlifedata.com/resource/umls/id/C0836135 +xref: http://www.snomedbrowser.com/Codes/Details/32210007 +xref: NCIT:C33552 +xref: TAO:0001496 +xref: UMLS:C0836135 {source="ncithesaurus:Simple_Columnar_Epithelium"} +xref: XAO:0004008 +xref: ZFA:0001496 +is_a: UBERON:0000490 ! unilaminar epithelium +is_a: UBERON:0012274 ! columnar epithelium + +[Term] +id: UBERON:0000486 +name: multilaminar epithelium +def: "Epithelium which consists of more than one layer of epithelial cells that may or may not be in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, ciliated stratified columnar epithelium.[FMA]" [FMA:FMA, http://en.wikipedia.org/wiki/Stratified_epithelium, http://orcid.org/0000-0001-9114-8737] +subset: uberon_slim +subset: vertebrate_core +synonym: "laminated epithelium" RELATED [BTO:0002074] +synonym: "stratified epithelium" EXACT [] +xref: AAO:0010059 +xref: AEO:0000069 +xref: BILA:0000069 +xref: BTO:0002074 +xref: CARO:0000069 +xref: EHDAA2:0003069 +xref: FMA:45562 +xref: HAO:0000069 +xref: http://linkedlifedata.com/resource/umls/id/C0682575 +xref: http://www.snomedbrowser.com/Codes/Details/309044005 +xref: NCIT:C33622 +xref: Stratified:epithelium +xref: TAO:0001494 +xref: UMLS:C0682575 {source="ncithesaurus:Stratified_Epithelium"} +xref: XAO:0004006 +xref: ZFA:0001494 +is_a: UBERON:0000483 ! epithelium + +[Term] +id: UBERON:0000487 +name: simple squamous epithelium +def: "Unilaminar epithelium which consists of a single layer of squamous cells. Examples: pulmonary alveolar epithelium, endothelium.[FMA]" [FMA:45565, http://en.wikipedia.org/wiki/Simple_squamous_epithelium, http://orcid.org/0000-0001-9114-8737] +subset: uberon_slim +subset: vertebrate_core +synonym: "epithelium simplex squamosum" EXACT [] +synonym: "simple squamous epithelia" RELATED PLURAL [ZFA:0001498] +xref: AAO:0010066 +xref: AEO:0000070 +xref: BILA:0000070 +xref: BTO:0002073 +xref: CARO:0000070 +xref: EHDAA2:0003070 +xref: FMA:45565 +xref: HAO:0000070 +xref: http://en.wikipedia.org/wiki/Simple_squamous_epithelium +xref: http://linkedlifedata.com/resource/umls/id/C0836133 +xref: NCIT:C13178 +xref: TAO:0001498 +xref: UMLS:C0836133 {source="ncithesaurus:Simple_Squamous_Epithelium"} +xref: XAO:0004010 +xref: ZFA:0001498 +is_a: UBERON:0000490 ! unilaminar epithelium +is_a: UBERON:0006914 ! squamous epithelium + +[Term] +id: UBERON:0000488 +name: atypical epithelium +def: "Epithelium that consists of epithelial cells not arranged in one ore more layers." [http://orcid.org/0000-0001-9114-8737] +subset: vertebrate_core +synonym: "atypical epithelia" RELATED PLURAL [ZFA:0001493] +synonym: "heterogenous epithelium" EXACT [] +xref: AAO:0010057 +xref: AEO:0000071 +xref: BILA:0000071 +xref: CARO:0000071 +xref: EHDAA2:0003071 +xref: FMA:61741 +xref: HAO:0000071 +xref: TAO:0001493 +xref: XAO:0004004 +xref: ZFA:0001493 +is_a: UBERON:0000483 ! epithelium + +[Term] +id: UBERON:0000489 +name: cavitated compound organ +def: "Compound organ that contains one or more macroscopic anatomical spaces." [http://orcid.org/0000-0001-9114-8737] +subset: organ_slim +subset: upper_level +synonym: "cavitated compound organs" RELATED PLURAL [ZFA:0001490] +synonym: "cavitated organ" EXACT [FMA:55671] +xref: AAO:0010016 +xref: AEO:0000072 +xref: BILA:0000072 +xref: CARO:0000072 +xref: EHDAA2:0003072 +xref: FMA:55671 +xref: HAO:0000072 +xref: TAO:0001490 +xref: TGMA:0001857 +xref: VHOG:0001730 +xref: XAO:0003165 +xref: ZFA:0001490 +is_a: UBERON:0003103 ! compound organ +intersection_of: UBERON:0003103 ! compound organ +intersection_of: has_part UBERON:0002553 ! anatomical cavity +relationship: has_part UBERON:0002553 ! anatomical cavity + +[Term] +id: UBERON:0000490 +name: unilaminar epithelium +def: "Epithelium which consists of a single layer of epithelial cells. Examples: endothelium, mesothelium, glandular squamous epithelium.[FMA]" [FMA:45561, http://orcid.org/0000-0001-9114-8737] +subset: vertebrate_core +synonym: "simple epithelium" EXACT [FMA:45561] +synonym: "unilaminar epithelia" RELATED PLURAL [ZFA:0001495] +xref: AAO:0010062 +xref: AEO:0000073 +xref: BILA:0000073 +xref: BTO:0002073 +xref: CARO:0000073 +xref: EHDAA2:0003073 +xref: FMA:45561 +xref: HAO:0000073 +xref: http://linkedlifedata.com/resource/umls/id/C0682574 +xref: http://www.snomedbrowser.com/Codes/Details/309043004 +xref: NCIT:C33554 +xref: TAO:0001495 +xref: UMLS:C0682574 {source="ncithesaurus:Simple_Epithelium"} +xref: XAO:0004007 +xref: ZFA:0001495 +is_a: UBERON:0000483 ! epithelium + +[Term] +id: UBERON:0000491 +name: solid compound organ +def: "Compound organ that does not contain macroscopic anatomical spaces." [http://orcid.org/0000-0001-9114-8737] +subset: organ_slim +subset: upper_level +synonym: "solid compound organs" RELATED PLURAL [ZFA:0001491] +synonym: "solid organ" RELATED [FMA:55670] +xref: AAO:0010019 +xref: AEO:0000074 +xref: BILA:0000074 +xref: CARO:0000074 +xref: EHDAA2:0003074 +xref: FMA:55670 +xref: HAO:0000074 +xref: TAO:0001491 +xref: TGMA:0001859 +xref: XAO:0003164 +xref: ZFA:0001491 +is_a: UBERON:0003103 ! compound organ + +[Term] +id: UBERON:0000569 +name: ileocecal valve +def: "The ileocecal valve is a sphincter muscle situated at the junction of the small intestine (ileum) and the large intestine. Its critical function is to limit the reflux of colonic contents into the ileum." [http://en.wikipedia.org/wiki/Ileocecal_valve] +synonym: "Tulp's valve" RELATED [http://en.wikipedia.org/wiki/Ileocecal_valve] +synonym: "valva ileocaecalis" RELATED LATIN [http://en.wikipedia.org/wiki/Ileocecal_valve] +synonym: "valva ileocaecalis (valva ilealis)" EXACT [FMA:15973] +xref: FMA:15973 +xref: galen:IleocecalValve +xref: http://linkedlifedata.com/resource/umls/id/C0020880 +xref: http://www.snomedbrowser.com/Codes/Details/362153007 +xref: Ileocecal:valve +xref: NCIT:C13066 +xref: UMLS:C0020880 {source="ncithesaurus:Ileocecal_Valve"} +is_a: UBERON:0003978 {source="Obol"} ! valve +is_a: UBERON:0011185 ! gastrointestinal sphincter +relationship: part_of UBERON:0001073 {source="FMA"} ! ileocecal junction + +[Term] +id: UBERON:0000642 +name: suspensory ligament of duodenum +def: "A thin muscle connecting the junction between the duodenum, jejunum, and duodenojejunal flexure to connective tissue surrounding the superior mesenteric artery and coeliac artery" [http://en.wikipedia.org/wiki/Suspensory_muscle_of_duodenum] +synonym: "ligament of Treitz" EXACT [FMA:20509] +synonym: "muscle of Treitz" EXACT [FMA:20509] +synonym: "musculus suspensorius duodeni" EXACT [FMA:20509] +synonym: "musculus suspensorius duodeni" RELATED LATIN [http://en.wikipedia.org/wiki/Suspensory_muscle_of_duodenum] +synonym: "suspensory muscle of duodenum" EXACT [FMA:20509] +xref: FMA:20509 +xref: http://en.wikipedia.org/wiki/Suspensory_muscle_of_duodenum +xref: http://www.snomedbrowser.com/Codes/Details/279979000 +is_a: UBERON:0008841 {source="Obol"} ! suspensory ligament +intersection_of: UBERON:0008841 ! suspensory ligament +intersection_of: attaches_to UBERON:0002114 ! duodenum +relationship: attaches_to UBERON:0001103 {source="Obol"} ! diaphragm +relationship: attaches_to UBERON:0002114 {source="Obol"} ! duodenum + +[Term] +id: UBERON:0000711 +name: splenius capitis +def: "A muscle that arises from the lower half of the ligamentum nuchæ, from the spinous process of the seventh cervical vertebra, and from the spinous processes of the upper three or four thoracic vertebræ and inserts the mastoid process of the temporal bone, and into the rough surface on the occipital bone just below the lateral third of the superior nuchal line[WP,modified]." [http://en.wikipedia.org/wiki/Splenius_capitis_muscle] +synonym: "musculus splenius capitis" RELATED LATIN [http://en.wikipedia.org/wiki/Splenius_capitis_muscle] +synonym: "splenius capitis muscle" EXACT [http://en.wikipedia.org/wiki/Splenius_capitis_muscle] +xref: FMA:22653 +xref: http://en.wikipedia.org/wiki/Splenius_capitis_muscle +xref: http://www.snomedbrowser.com/Codes/Details/244850004 +is_a: UBERON:0002252 {source="FMA"} ! splenius +is_a: UBERON:0002377 ! muscle of neck +relationship: has_muscle_insertion UBERON:0011220 {source="Mastoid:process"} ! mastoid process of temporal bone +relationship: has_muscle_origin UBERON:0000351 {notes="Ligamentum nuchae spinous process of C7-T6", source="dbpedia"} ! nuchal ligament +relationship: part_of UBERON:0012477 ! dorsal part of neck + +[Term] +id: UBERON:0000908 +name: hippocampal commissure +alt_id: UBERON:Commissure-MA_0002723 +def: "the triangular subcallosal plate of commissural fibers resulting from the converging of the right and left fornix bundles which exchange numerous fibers and which curve back in the contralateral fornix to end in the hippocampus of the opposite side" [ISBN:0-683-40008-8, MP:0008221] +subset: pheno_slim +subset: uberon_slim +synonym: "commissura hippocampi" EXACT LATIN [FMA:61970, FMA:TA] +synonym: "commissure of fornix" RELATED [http://en.wikipedia.org/wiki/Commissure_of_fornix] +synonym: "commissure of fornix of forebrain" EXACT [FMA:61970] +synonym: "commissure of the fornix" RELATED [BAMS:FG] +synonym: "commissure of the fornix" RELATED [BAMS:FC] +synonym: "delta fornicis" EXACT [MP:0008221] +synonym: "dorsal hippocampal commissure" EXACT [FMA:61970] +synonym: "fornical commissure" EXACT [FMA:61970] +synonym: "fornix commissure" EXACT [FMA:61970] +synonym: "hippocampal commissures" RELATED [BAMS:hc] +synonym: "hippocampus commissure" EXACT [MP:0008221] +xref: BAMS:cfx +xref: BAMS:dhc +xref: BAMS:FC +xref: BAMS:FG +xref: BAMS:hc +xref: BIRNLEX:746 +xref: DHBA:10560 +xref: DMBA:17769 +xref: EMAPA:35404 +xref: FMA:61970 +xref: HBA:9228 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=273 +xref: http://en.wikipedia.org/wiki/Commissure_of_fornix +xref: http://linkedlifedata.com/resource/umls/id/C0228287 +xref: http://www.snomedbrowser.com/Codes/Details/369115003 +xref: MA:0002723 +xref: MBA:618 +xref: UMLS:C0228287 {source="BIRNLEX:746"} +is_a: UBERON:0005340 {source="MP"} ! dorsal telencephalic commissure +disjoint_from: UBERON:0014539 {source="NIFSTD"} ! precommissural fornix of forebrain +relationship: connects UBERON:0001954 ! Ammon's horn +relationship: part_of UBERON:0002437 ! cerebral hemisphere white matter + +[Term] +id: UBERON:0000910 +name: chyme +def: "A semifluid mass of partly digested food expelled by the stomach into the duodenum." [http://en.wikipedia.org/wiki/Chyme] +comment: Chyme has a low pH that is countered by the production of bile, helping to further digest food. Chyme is also part liquid and part solid: a thick semifluid mass of partially digested food and digestive secretions that is formed in the stomach and intestine during digestion. +synonym: "chymus" EXACT [ENVO:02000026] +xref: ENVO:02000026 +xref: FMA:62961 +xref: http://en.wikipedia.org/wiki/Chyme +is_a: UBERON:0006314 {source="WP"} ! bodily fluid +is_a: UBERON:0012112 {editor_note="consider changing to derivation relationship", source="FMA"} ! ingested food +disjoint_from: UBERON:0012113 ! bolus of food + +[Term] +id: UBERON:0000911 +name: chyle +def: "Chyle is a bodily fluid consisting of a milky fluid consisting of lymph and emulsified fats; formed in the small intestine during digestion of ingested fats." [http://en.wikipedia.org/wiki/Chyle, http://wordnet.princeton.edu/perl/webwn?s=chyle] +xref: ENVO:02000030 +xref: FMA:61403 +xref: GAID:1187 +xref: http://en.wikipedia.org/wiki/Chyle +xref: http://linkedlifedata.com/resource/umls/id/C0008730 +xref: MESH:A12.207.630.350 +xref: NCIT:C93166 +xref: UMLS:C0008730 {source="ncithesaurus:Chyle"} +is_a: UBERON:0000463 ! organism substance +relationship: has_part UBERON:0002391 ! lymph +relationship: produced_by UBERON:0002108 ! small intestine + +[Term] +id: UBERON:0000912 +name: mucus +def: "Mucus is a bodily fluid consisting of a slippery secretion of the lining of the mucous membranes in the body. It is a viscous colloid containing antiseptic enzymes (such as lysozyme) and immunoglobulins. Mucus is produced by goblet cells in the mucous membranes that cover the surfaces of the membranes. It is made up of mucins and inorganic salts suspended in water." [http://en.wikipedia.org/wiki/Mucus] +xref: CALOHA:TS-2144 +xref: ENVO:02000040 +xref: FMA:66938 +xref: GAID:1164 +xref: galen:Mucus +xref: http://en.wikipedia.org/wiki/Mucus +xref: http://linkedlifedata.com/resource/umls/id/C0026727 +xref: MESH:D009093 +xref: NCIT:C13259 +xref: OpenCyc:Mx4rvVjHq5wpEbGdrcN5Y29ycA +xref: UMLS:C0026727 {source="ncithesaurus:Mucus"} +is_a: UBERON:0000456 ! secretion of exocrine gland +is_a: UBERON:0006314 ! bodily fluid +relationship: produced_by UBERON:0000344 ! mucosa + +[Term] +id: UBERON:0000913 +name: interstitial fluid +def: "Interstitial fluid is a bodily fluid consisting of a solution which bathes and surrounds the cells of multicellular animals. It is the main component of the extracellular fluid, which also includes plasma and transcellular fluid." [http://en.wikipedia.org/wiki/Interstitial_fluid] +subset: pheno_slim +synonym: "intercellular fluid" EXACT [ENVO:02000042] +synonym: "tissue fluid" EXACT [ENVO:02000042] +xref: ENVO:02000042 +xref: FMA:9673 +xref: Interstitial:fluid +xref: NCIT:C120839 +is_a: UBERON:0000463 ! organism substance +relationship: part_of UBERON:0000479 ! tissue + +[Term] +id: UBERON:0000914 +name: organismal segment +def: "One of the repeated divisions of the whole organism." [FB:gg, http://en.wikipedia.org/wiki/Segmentation_(biology)] +subset: uberon_slim +subset: upper_level +synonym: "segment" EXACT [FBbt:00000003] +synonym: "serial element" EXACT [] +xref: FBbt:00000003 +xref: HAO:0000929 +xref: MAT:0000271 +xref: MIAA:0000271 +xref: Segmentation:(biology) +is_a: UBERON:0000475 ! organism subdivision + +[Term] +id: UBERON:0000915 +name: thoracic segment of trunk +def: "Subdivision of trunk that lies between the head and the abdomen." [http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "anterior subdivision of trunk" RELATED [] +synonym: "thorax" EXACT [MA:0000022] +synonym: "upper body" RELATED [] +synonym: "upper trunk" RELATED [FMA:259209] +xref: EMAPA:35862 +xref: FMA:259209 +xref: http://en.wikipedia.org/wiki/Thorax +xref: http://www.snomedbrowser.com/Codes/Details/302551006 +xref: MA:0000022 +is_a: UBERON:0009569 {source="FMA"} ! subdivision of trunk +is_a: UBERON:0011676 ! subdivision of organism along main body axis +intersection_of: UBERON:0011676 ! subdivision of organism along main body axis +intersection_of: has_skeleton UBERON:0014477 ! thoracic skeleton +relationship: has_skeleton UBERON:0014477 ! thoracic skeleton + +[Term] +id: UBERON:0000916 +name: abdomen +def: "The subdivision of the vertebrate body between the thorax and pelvis. The ventral part of the abdomen contains the abdominal cavity and visceral organs. The dorsal part includes the abdominal section of the vertebral column." [http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "abdominopelvic region" EXACT [FMA:9577] +synonym: "abdominopelvis" EXACT [FMA:9577] +synonym: "adult abdomen" RELATED [] +synonym: "belly" RELATED [] +synonym: "celiac region" RELATED [] +xref: BTO:0000020 +xref: CALOHA:TS-0001 +xref: EFO:0000968 +xref: EMAPA:35102 +xref: EV:0100011 +xref: FMA:9577 +xref: GAID:16 +xref: galen:Abdomen +xref: http://en.wikipedia.org/wiki/Abdomen +xref: http://www.snomedbrowser.com/Codes/Details/302553009 +xref: MA:0000029 +xref: MAT:0000298 +xref: MESH:A01.047 +xref: MIAA:0000298 +xref: OpenCyc:Mx4rvVjgyZwpEbGdrcN5Y29ycA +is_a: UBERON:0009569 ! subdivision of trunk +relationship: part_of UBERON:0002417 {source="MA"} ! abdominal segment of trunk + +[Term] +id: UBERON:0000917 +name: obsolete abdominal segment +synonym: "segment of abdomen" EXACT [OBOL:automatic] +is_obsolete: true +consider: FBbt:00000021 +consider: HAO:0000016 +consider: SPD:0000055 +consider: UBERON:0002417 + +[Term] +id: UBERON:0000918 +name: obsolete yolk +def: "The nutritive substance contained in the egg." [FB:gg] +synonym: "vegetal yolk mass" BROAD [] +synonym: "yolk cell" RELATED [] +xref: MAT:0000335 +xref: MIAA:0000335 +is_obsolete: true +consider: BTO:0000371 +consider: FBbt:00000035 +consider: GO:0060417 +consider: UBERON:0007378 +consider: XAO:0000281 +consider: ZFA:0000084 + +[Term] +id: UBERON:0000919 +name: obsolete lipid droplet +is_obsolete: true +replaced_by: GO:0005811 +consider: FMA:62962 +consider: GO:0005811 + +[Term] +id: UBERON:0000920 +name: egg chorion +def: "A protective, noncellular membrane that surrounds the eggs of various animals including insects and fish [GO]." [GO:0042600, http://en.wikipedia.org/wiki/Chorion_(egg)] +subset: dubious_grouping +subset: uberon_slim +subset: vertebrate_core +synonym: "chorion" RELATED [] +synonym: "chorion (egg)" EXACT [] +xref: Chorion:(egg) +xref: FBbt:00000038 +xref: TAO:0000329 +xref: TGMA:0000681 +xref: ZFA:0000329 +is_a: UBERON:0000476 ! acellular anatomical structure +disjoint_from: UBERON:0003124 ! chorion membrane +relationship: part_of UBERON:0016887 ! entire extraembryonic component +relationship: surrounds UBERON:0003125 ! vitelline membrane + +[Term] +id: UBERON:0000921 +name: obsolete pronucleus +def: "." [http://en.wikipedia.org/wiki/Pronucleus] +xref: http://en.wikipedia.org/wiki/Pronucleus +is_obsolete: true +replaced_by: GO:0045120 +consider: FBbt:00000048 +consider: FMA:84673 +consider: GO:0045120 + +[Term] +id: UBERON:0000922 +name: embryo +def: "Anatomical entity that comprises the organism in the early stages of growth and differentiation that are characterized by cleavage, the laying down of fundamental tissues, and the formation of primitive organs and organ systems. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant." [BTO:0000379, FB:FBrf0039741, FB:FBrf0041814, GO:0009790, http://en.wikipedia.org/wiki/Embryo] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "developing organism" RELATED [BILA:0000056] +synonym: "developmental tissue" RELATED [] +synonym: "embryonic organism" EXACT [BILA:0000056] +xref: AAO:0011035 +xref: AEO:0000169 +xref: BILA:0000056 +xref: BSA:0000039 +xref: BTO:0000379 +xref: CALOHA:TS-0229 +xref: Category:Embryonic\:organism +xref: EFO:0001367 +xref: EHDAA2:0000002 +xref: EHDAA2_RETIRED:0003236 +xref: EHDAA:38 +xref: EMAPA:16039 +xref: FBbt:00000052 +xref: FMA:69068 +xref: GAID:963 +xref: http://en.wikipedia.org/wiki/Embryo +xref: http://linkedlifedata.com/resource/umls/id/C0013935 +xref: http://www.snomedbrowser.com/Codes/Details/57991002 +xref: MAT:0000226 +xref: MESH:D004622 +xref: MIAA:0000019 +xref: NCIT:C28147 +xref: OGEM:000001 +xref: OpenCyc:Mx4rwP1ceZwpEbGdrcN5Y29ycA +xref: UMLS:C0013935 {source="ncithesaurus:Embryo"} +xref: VHOG:0001766 +xref: XAO:0000113 +xref: ZFA:0000103 +is_a: UBERON:0000468 ! multicellular organism +intersection_of: UBERON:0000468 ! multicellular organism +intersection_of: existence_ends_with UBERON:0000068 ! embryo stage +intersection_of: existence_starts_with UBERON:0000068 ! embryo stage +relationship: existence_ends_with UBERON:0000068 ! embryo stage +relationship: existence_starts_with UBERON:0000068 ! embryo stage + +[Term] +id: UBERON:0000923 +name: germ layer +def: "A layer of cells produced during the process of gastrulation during the early development of the animal embryo, which is distinct from other such layers of cells, as an early step of cell differentiation. The three types of germ layers are the endoderm, ectoderm, and mesoderm." [http://en.wikipedia.org/wiki/Germ_layer, https://github.com/obophenotype/uberon/issues/203] +comment: Classically the germ layers are ectoderm, mesoderm and endoderm. Alternatively: primary = ectoderm, endoderm; secondary=mesoderm; tertiary=dorsal mesoderm, NC[https://github.com/obophenotype/uberon/wiki/The-neural-crest] +subset: uberon_slim +subset: vertebrate_core +synonym: "embryonic germ layer" RELATED [] +synonym: "embryonic germ layers" RELATED [] +synonym: "embryonic tissue" BROAD [FMA:69069] +synonym: "germinal layer" EXACT [ncithesaurus:Germinal_Layer] +synonym: "primary germ layer" NARROW [GO:0001704, ZFA:0001122] +xref: AAO:0000480 +xref: BILA:0000035 +xref: BTO:0000556 +xref: EMAPA:36033 +xref: FBbt:00000110 +xref: FMA:69069 +xref: GAID:1303 +xref: Germ:layer +xref: http://linkedlifedata.com/resource/umls/id/C0920502 +xref: http://linkedlifedata.com/resource/umls/id/C1708239 +xref: MESH:A16.254.425 +xref: NCIT:C12950 +xref: NCIT:C54105 +xref: TAO:0001122 +xref: UMLS:C0920502 {source="ncithesaurus:Embryonic_Tissue"} +xref: UMLS:C1708239 {source="ncithesaurus:Germinal_Layer"} +xref: VHOG:0001223 +xref: XAO:0003011 +xref: ZFA:0001122 +is_a: UBERON:0010316 ! germ layer / neural crest + +[Term] +id: UBERON:0000924 +name: ectoderm +def: "Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue." [http://en.wikipedia.org/wiki/Ectoderm] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "embryonic ectoderm" EXACT [VHOG:0000153] +xref: AAO:0000137 +xref: BILA:0000036 +xref: BTO:0000315 +xref: CALOHA:TS-0216 +xref: EFO:0000414 +xref: EHDAA2:0000428 +xref: EMAPA:16069 +xref: EV:0100003 +xref: FBbt:00000111 +xref: FMA:69070 +xref: GAID:1304 +xref: http://en.wikipedia.org/wiki/Ectoderm +xref: http://linkedlifedata.com/resource/umls/id/C0013574 +xref: http://www.snomedbrowser.com/Codes/Details/362851007 +xref: MAT:0000155 +xref: MAT:0000173 +xref: MESH:A16.254.425.273 +xref: MIAA:0000173 +xref: NCIT:C12703 +xref: TAO:0000016 +xref: UMLS:C0013574 {source="ncithesaurus:Ectoderm"} +xref: VHOG:0000153 +xref: XAO:0000001 +xref: ZFA:0000016 +is_a: UBERON:0000923 ! germ layer +relationship: develops_from UBERON:0006601 ! presumptive ectoderm +relationship: immediate_transformation_of UBERON:0006601 {source="Bgee:AN"} ! presumptive ectoderm + +[Term] +id: UBERON:0000925 +name: endoderm +def: "Primary germ layer that lies remote from the surface of the embryo and gives rise to internal tissues such as gut." [http://en.wikipedia.org/wiki/Endoderm] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "entoderm" RELATED DEPRECATED [https://doi.org/10.5962/bhl.title.1013] +xref: AAO:0000139 +xref: BILA:0000038 +xref: BTO:0000800 +xref: CALOHA:TS-0273 +xref: EFO:0002545 +xref: EHDAA2:0000436 +xref: EMAPA:16062 +xref: EV:0100005 +xref: FBbt:00000125 +xref: FMA:69071 +xref: GAID:1305 +xref: http://en.wikipedia.org/wiki/Endoderm +xref: http://linkedlifedata.com/resource/umls/id/C0014144 +xref: http://www.snomedbrowser.com/Codes/Details/362855003 +xref: MAT:0000175 +xref: MESH:A16.254.425.407 +xref: MIAA:0000175 +xref: NCIT:C12706 +xref: TAO:0000017 +xref: UMLS:C0014144 {source="ncithesaurus:Endoderm"} +xref: VHOG:0000154 +xref: XAO:0000090 +xref: ZFA:0000017 +is_a: UBERON:0000923 ! germ layer +relationship: develops_from UBERON:0006595 ! presumptive endoderm +relationship: immediate_transformation_of UBERON:0006595 {source="Bgee:AN"} ! presumptive endoderm + +[Term] +id: UBERON:0000926 +name: mesoderm +alt_id: UBERON:0003263 +def: "The middle germ layer of the embryo, between the endoderm and ectoderm." [http://en.wikipedia.org/wiki/Mesoderm] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "embryonic mesoderm" RELATED [VHOG:0000152] +synonym: "entire mesoderm" RELATED [http://www.snomedbrowser.com/Codes/Details/362854004, https://orcid.org/0000-0002-6601-2165] +synonym: "mesodermal mantle" RELATED [] +xref: AAO:0000304 +xref: BILA:0000037 +xref: BTO:0000839 +xref: CALOHA:TS-0623 +xref: EFO:0001981 +xref: EHDAA2:0001128 +xref: EHDAA:124 +xref: EHDAA:160 +xref: EHDAA:183 +xref: EMAPA:16083 +xref: EV:0100006 +xref: FBbt:00000126 +xref: FMA:69072 +xref: GAID:522 +xref: http://en.wikipedia.org/wiki/Mesoderm +xref: http://linkedlifedata.com/resource/umls/id/C0025485 +xref: http://www.snomedbrowser.com/Codes/Details/362854004 +xref: MAT:0000174 +xref: MESH:A16.254.425.660 +xref: MIAA:0000174 +xref: NCIT:C12750 +xref: TAO:0000041 +xref: UMLS:C0025485 {source="ncithesaurus:Mesoderm"} +xref: VHOG:0000152 +xref: XAO:0000050 +xref: ZFA:0000041 +is_a: UBERON:0000923 {notes="sometimes not considered primary"} ! germ layer +relationship: develops_from UBERON:0006603 ! presumptive mesoderm +relationship: immediate_transformation_of UBERON:0006603 {source="Bgee:AN"} ! presumptive mesoderm + +[Term] +id: UBERON:0000927 +name: mesectoderm +def: "A double row of cells which are located at the midline from the end of gastrulations. The morphology of these cells is distinct from adjacent ectodermal cells - they are elongated such that one end remains exposed to the outside of the embryo at the mideline while the other end bissects the internalised mesoderm." [FB:FBrf0089570] +comment: Split term? The part of the mesenchyme derived from ectoderm, especially from the embryonic neural crest from which the pigment cells, meninges, and most of the branchial cartilages develop.[TFD] +subset: efo_slim +subset: uberon_slim +synonym: "MesEc" RELATED [] +xref: EFO:0003336 +xref: FBbt:00000136 +xref: MAT:0000243 +xref: MIAA:0000243 +is_a: UBERON:0000923 ! germ layer +relationship: adjacent_to UBERON:0000924 ! ectoderm + +[Term] +id: UBERON:0000928 +name: obsolete embryonic segment +synonym: "segment - embryonic" EXACT [] +is_obsolete: true +consider: FBbt:00000154 +consider: MAT:0000244 +consider: MIAA:0000244 + +[Term] +id: UBERON:0000929 +name: pharyngeal branch of vagus nerve +def: "Motor nerve of the pharynx, arises from the upper part of the ganglion nodosum, and consists principally of filaments from the cranial portion of the accessory nerve." [http://en.wikipedia.org/wiki/Pharyngeal_part_of_vagus_nerve] +subset: uberon_slim +synonym: "pharyngeal branch" EXACT [FMA:6234] +synonym: "pharyngeal branch of inferior vagal ganglion" EXACT [FMA:6234] +synonym: "pharyngeal branch of vagus" EXACT [FMA:6234] +synonym: "ramus pharyngealis nervi vagalis" EXACT [FMA:6234] +synonym: "ramus pharyngeus" EXACT LATIN [FMA:6234, FMA:TA] +synonym: "ramus pharyngeus" EXACT [FMA:TA] +synonym: "ramus pharyngeus nervi vagi" RELATED LATIN [http://en.wikipedia.org/wiki/Pharyngeal_part_of_vagus_nerve] +synonym: "tenth cranial nerve pharyngeal branch" EXACT [FMA:6234] +synonym: "vagal pharyngeal branch" EXACT [FMA:6234] +synonym: "vagus nerve pharyngeal branch" EXACT [FMA:6234] +xref: FMA:6234 +xref: http://en.wikipedia.org/wiki/Pharyngeal_part_of_vagus_nerve +xref: http://www.snomedbrowser.com/Codes/Details/280298006 +is_a: UBERON:0011779 ! nerve of head region +relationship: branching_part_of UBERON:0001759 ! vagus nerve +relationship: extends_fibers_into UBERON:0005363 ! inferior vagus X ganglion +relationship: part_of UBERON:0001005 ! respiratory airway +relationship: part_of UBERON:0001759 ! vagus nerve + +[Term] +id: UBERON:0000930 +name: stomodeum +def: "Anterior part of the embryonic digestive tract that develops into a mouth. The stomodeum includes as parts an invagination of the ectoderm and the stomodeal cavity." [http://en.wikipedia.org/wiki/Stomodeum, http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/326] +subset: grouping_class +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "mouth pit" RELATED [EMAPA:16263] +synonym: "mouth primordium" EXACT [XAO:0000269] +synonym: "oral ectoderm" RELATED [ZFA:0001290, ZFIN:ZDB-PUB-100726-23] +synonym: "oral pit" RELATED [EMAPA:16263] +synonym: "primitive oral cavity" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "stomatodeum" EXACT [http://en.wikipedia.org/wiki/Stomodeum] +synonym: "stomodaeum" EXACT [] +synonym: "stomodeal-hypophyseal primordium" BROAD [XAO:0000269] +xref: BTO:0004224 +xref: EHDAA2:0001929 +xref: EMAPA:16263 +xref: FBbt:00000439 +xref: FMA:295846 +xref: http://en.wikipedia.org/wiki/Stomodeum +xref: http://linkedlifedata.com/resource/umls/id/C1514977 +xref: NCIT:C34306 +xref: TAO:0001290 +xref: TGMA:0000135 +xref: UMLS:C1514977 {source="ncithesaurus:Stomodeum"} +xref: XAO:0000269 +xref: ZFA:0001290 +is_a: UBERON:0013522 ! subdivision of tube +relationship: part_of UBERON:0000924 ! ectoderm +relationship: part_of UBERON:0035804 ! future mouth + +[Term] +id: UBERON:0000931 +name: proctodeum +def: "Inward fold on the surface of the embryonic ectoderm that develops into an ectodermal terminal part of the digestive tract." [https://github.com/obophenotype/uberon/issues/685, https://sourceforge.net/p/fbbtdv/tickets/52, ZFA:0000066] +subset: uberon_slim +synonym: "amnioproctodeal invagination" NARROW [FBbt:00000123] +synonym: "anal pit" RELATED [VHOG:0000139] +synonym: "anus porus" RELATED [XAO:0001019] +synonym: "embryonic proctodaeum" EXACT [] +synonym: "proctodaeum" EXACT [] +xref: AAO:0011087 +xref: EHDAA2:0000121 +xref: EMAPA:25038 +xref: FBbt:00000123 +xref: http://en.wikipedia.org/wiki/Proctodeum +xref: http://linkedlifedata.com/resource/umls/id/C0231054 +xref: NCIT:C34278 +xref: TAO:0000066 +xref: UMLS:C0231054 {source="ncithesaurus:Proctodeum"} +xref: VHOG:0000139 +xref: XAO:0001019 +xref: ZFA:0000066 +is_a: UBERON:0016566 {source="EHDAA2"} ! pit +property_value: dc-contributor https://github.com/ANiknejad +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/dosumis +property_value: dc-contributor https://github.com/mmc46 +relationship: develops_from UBERON:0000924 ! ectoderm +relationship: has_potential_to_develop_into UBERON:0001353 ! anal region +relationship: located_in UBERON:0012469 {source="EHDAA2"} ! external anal region +relationship: part_of UBERON:0007026 ! presumptive gut + +[Term] +id: UBERON:0000932 +name: obsolete ventral longitudinal muscle +comment: originally unified on basis of terminological similarity +is_obsolete: true +consider: FBbt:00000482 +consider: WBbt:0005814 + +[Term] +id: UBERON:0000933 +name: pharyngeal muscle +def: "A muscle that acts on the pharynx[WP, vetted]." [http://en.wikipedia.org/wiki/Pharyngeal_muscles, https://orcid.org/0000-0002-6601-2165] +comment: Innervation notes: They are innervated by the pharyngeal branch of the Vagus nerve (CN X) with the exception of the stylopharyngeus muscle which is innervated by the glossopharyngeal nerve (CN IX).[WP] +subset: efo_slim +subset: pheno_slim +synonym: "branchial muscle" EXACT [ZFA:0000172] +synonym: "branchial muscles" RELATED PLURAL [TAO:0000172] +synonym: "muscle of pharynx" EXACT [] +synonym: "muscle organ of pharynx" EXACT [OBOL:automatic] +synonym: "musculi pharyngis" RELATED LATIN [http://en.wikipedia.org/wiki/Pharyngeal_muscles] +synonym: "musculus pharyngis" RELATED [BTO:0001048] +synonym: "pharynx muscle" EXACT [] +synonym: "pharynx muscle organ" EXACT [OBOL:automatic] +synonym: "tunica muscularis pharyngis" RELATED LATIN [http://en.wikipedia.org/wiki/Pharyngeal_muscles] +xref: BTO:0001048 +xref: EFO:0003504 +xref: EMAPA:18963 +xref: FMA:46619 +xref: GAID:154 +xref: http://linkedlifedata.com/resource/umls/id/C0031346 +xref: http://www.snomedbrowser.com/Codes/Details/244798004 +xref: MA:0001797 +xref: MESH:D010609 +xref: NCIT:C13075 +xref: Pharyngeal:muscles +xref: TAO:0000172 +xref: UMLS:C0031346 {source="ncithesaurus:Pharyngeal_Muscle"} +xref: ZFA:0000172 +is_a: UBERON:0001630 ! muscle organ +intersection_of: UBERON:0001630 ! muscle organ +intersection_of: part_of UBERON:0004467 ! musculature of pharynx +relationship: contributes_to_morphology_of UBERON:0001015 ! musculature +relationship: fma_set_term FMA:67169 +relationship: part_of UBERON:0004467 ! musculature of pharynx + +[Term] +id: UBERON:0000934 +name: ventral nerve cord +def: "The pair of closely united ventral longitudinal nerves with their segmental ganglia that is characteristic of many elongate invertebrates (as earthworms)[BTO]. A large process bundle that runs along the vental mid-line extending from the ventral region of the nerve ring[WB]. The ventral cord is one of the distinguishing traits of the central nervous system of all arthropods (such as insects, crustaceans and arachnids) as well as many other invertebrates, such as the annelid worms[GO]." [BTO:0002328, GO:0007419, http://en.wikipedia.org/wiki/Ventral_nerve_cord, WB:Paper00000938] +subset: efo_slim +subset: uberon_slim +synonym: "ventral cord" EXACT [GO:0007419] +xref: BTO:0002328 +xref: EFO:0000896 +xref: FBbt:00001102 +xref: http://en.wikipedia.org/wiki/Ventral_nerve_cord +xref: MAT:0000339 +xref: MIAA:0000339 +xref: NLX:146329 +xref: WBbt:0005829 +is_a: UBERON:0005053 ! primary nerve cord +intersection_of: UBERON:0005053 ! primary nerve cord +intersection_of: intersects_midsagittal_plane_of UBERON:0013235 ! ventrum +relationship: intersects_midsagittal_plane_of UBERON:0013235 ! ventrum +relationship: part_of UBERON:0013235 ! ventrum + +[Term] +id: UBERON:0000935 +name: anterior commissure +def: "A bundle of myelinated nerve fibers passing transversely through the lamina terminalis and connecting symmetrical parts of the two cerebral hemispheres; it consists of a smaller anterior part (pars anterior commissurae anterioris) and a larger posterior part (pars posterior commissurae anterioris)." [BTO:0002169] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "AC" RELATED ABBREVIATION [NLX:144088] +synonym: "anterior cerebral commissure" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "anterior commissural nucleus" RELATED [BAMS:AC] +synonym: "commissura anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_commissure] +synonym: "commissura anterior cerebri" EXACT LATIN [NeuroNames:205] +synonym: "commissura rostral" RELATED [] +synonym: "commissura rostralis" EXACT [] +synonym: "paleocortical commissure" RELATED [NeuroNames:205] +synonym: "precommisure" RELATED [http://en.wikipedia.org/wiki/Anterior_commisure] +synonym: "rostral commissure" RELATED [NeuroNames:205] +xref: Anterior:commissure +xref: BAMS:AC +xref: BAMS:Ac +xref: BAMS:ac +xref: BAMS:AG +xref: BIRNLEX:1557 +xref: BM:Tel-AC +xref: BTO:0002169 +xref: DHBA:10559 +xref: DMBA:17751 +xref: EMAPA:19038 +xref: FMA:61961 +xref: HBA:9221 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=205 +xref: http://linkedlifedata.com/resource/umls/id/C0152335 +xref: http://www.snomedbrowser.com/Codes/Details/279313001 +xref: http://www.snomedbrowser.com/Codes/Details/369119009 +xref: MA:0002722 +xref: NCIT:C32086 +xref: NLX:144088 +xref: TAO:0001108 +xref: UMLS:C0152335 {source="BIRNLEX:1557"} +xref: UMLS:C0152335 {source="ncithesaurus:Anterior_Commissure"} +xref: VHOG:0001558 +xref: ZFA:0001108 +is_a: UBERON:0002473 {source="FMA", source="MA"} ! intercerebral commissure +is_a: UBERON:0005341 {source="MP"} ! ventral commissure +disjoint_from: UBERON:0000936 {source="lexical"} ! posterior commissure + +[Term] +id: UBERON:0000936 +name: posterior commissure +def: "Rounded band of white fibers crossing the middle line on the dorsal aspect of the upper end of the cerebral aqueduct. It is important in the bilateral pupillary light reflex. Its fibers acquire their medullary sheaths early, but their connections have not been definitely determined. Most of them have their origin in a nucleus, the nucleus of the posterior commissure (nucleus of Darkschewitsch), which lies in the central gray substance of the upper end of the cerebral aqueduct, in front of the nucleus of the oculomotor nerve. Some are probably derived from the posterior part of the thalamus and from the superior colliculus, whereas others are believed to be continued downward into the medial longitudinal fasciculus. The posterior commissure interconnects the pretectal nuclei, mediating the consensual pupillary light reflex[WP]. Diencephalic tract which is located in the vicinity of the dorsal diencephalon and mesencephalon and connects the pretectal nuclei. From Neuroanatomy of the Zebrafish Brain[ZFA]." [http://en.wikipedia.org/wiki/Posterior_commissure, ZFA:0000320] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "caudal commissure" EXACT [FMA:62072, ZFA:0000320] +synonym: "commissura epithalami" RELATED LATIN [NeuroNames:484] +synonym: "commissura epithalamica" RELATED LATIN [NeuroNames:484] +synonym: "commissura posterior" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_commissure] +synonym: "epithalamic commissure" EXACT [FMA:62072] +synonym: "posterior commissure (Lieutaud)" RELATED [NeuroNames:484] +xref: BAMS:PC +xref: BAMS:pc +xref: BIRNLEX:1026 +xref: BM:MB-Tec-PC +xref: DHBA:10567 +xref: DMBA:17787 +xref: EMAPA:35695 +xref: FMA:62072 +xref: HBA:9229 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=484 {source="BIRNLEX:1026"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=484 +xref: http://linkedlifedata.com/resource/umls/id/C0152327 +xref: MA:0002743 +xref: MBA:158 +xref: NCIT:C33356 +xref: Posterior:commissure +xref: TAO:0000320 +xref: UMLS:C0152327 {source="BIRNLEX:1026"} +xref: UMLS:C0152327 {source="ncithesaurus:Posterior_Commissure"} +xref: ZFA:0000320 +is_a: UBERON:0011590 ! commissure of diencephalon +intersection_of: UBERON:0001020 ! nervous system commissure +intersection_of: connects UBERON:0014450 ! pretectal nucleus +relationship: connects UBERON:0014450 ! pretectal nucleus +relationship: part_of UBERON:0003931 {source="FMA"} ! diencephalic white matter + +[Term] +id: UBERON:0000937 +name: obsolete proneural cluster +comment: obsoleted because inconsistencies arise due to ZFA term being both embryonic and extraembryonic +synonym: "proneural clusters" RELATED [ZFA:0000068] +is_obsolete: true +consider: FBbt:00001135 +consider: ZFA:0000068 + +[Term] +id: UBERON:0000939 +name: imaginal disc +def: "one of the parts of a holometabolous insect larva that will become a portion of the outside of the adult insect during the pupal transformation." [http://en.wikipedia.org/wiki/Imaginal_disc] +subset: uberon_slim +synonym: "imaginal disk" RELATED [] +xref: BTO:0004658 +xref: FBbt:00001761 +xref: Imaginal:disc +xref: MAT:0000064 +xref: MIAA:0000064 +is_a: UBERON:0007499 {source="FBbt text definition"} ! epithelial sac +relationship: part_of UBERON:0002548 ! larva + +[Term] +id: UBERON:0000941 +name: cranial nerve II +def: "Cranial nerve fiber tract which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which some of the axons cross the midline and after which the structure is termed the optic tract. Transmits visual information from the retina to the brain[ZFA]." [ISBN:0471209627, ISBN:0471888893] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "02 optic nerve" EXACT [AAO:0010345] +synonym: "2n" BROAD ABBREVIATION [BIRNLEX:1640, NIFSTD:NeuroNames_abbrevSource] +synonym: "CN-II" RELATED [ZFA:0000435] +synonym: "cranial II" EXACT [] +synonym: "nerve II" RELATED [NeuroNames:289] +synonym: "nervus opticus" EXACT LATIN [] +synonym: "nervus opticus [II]" EXACT LATIN [FMA:50863, FMA:TA] +synonym: "optic" RELATED [TAO:0000435] +synonym: "optic II" EXACT [EHDAA2:0001313] +synonym: "optic II nerve" EXACT [EHDAA2:0001313] +synonym: "optic nerve" BROAD SENSU [FMA:50863, ZFA:0000435] +synonym: "optic nerve [II]" EXACT [] +synonym: "second cranial nerve" EXACT [] +xref: AAO:0010345 +xref: BAMS:2n +xref: BAMS:IIn +xref: BAMS:nII +xref: BIRNLEX:1640 +xref: CALOHA:TS-0713 +xref: DHBA:15544 +xref: EFO:0004258 +xref: EHDAA2:0001313 +xref: EHDAA:6788 +xref: EMAPA:17575 +xref: FMA:50863 +xref: GAID:831 +xref: HBA:9307 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=289 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=289 {source="BIRNLEX:1640"} +xref: http://linkedlifedata.com/resource/umls/id/C0029130 +xref: http://www.snomedbrowser.com/Codes/Details/180938001 +xref: MA:0001097 +xref: MBA:848 +xref: MESH:D009900 +xref: NCIT:C12761 +xref: OpenCyc:Mx4rvVjLm5wpEbGdrcN5Y29ycA +xref: Optic:nerve +xref: TAO:0000435 +xref: UMLS:C0029130 {source="BIRNLEX:1640"} +xref: UMLS:C0029130 {source="ncithesaurus:Optic_Nerve"} +xref: VHOG:0000543 +xref: XAO:0000188 +xref: ZFA:0000435 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0034713 ! cranial neuron projection bundle +intersection_of: UBERON:0034713 ! cranial neuron projection bundle +intersection_of: extends_fibers_into UBERON:0000959 ! optic chiasma +intersection_of: innervates UBERON:0000966 ! retina +relationship: develops_from UBERON:0003902 {source="EHDAA2"} ! retinal neural layer +relationship: extends_fibers_into UBERON:0000959 ! optic chiasma +relationship: extends_fibers_into UBERON:0003098 ! optic stalk +relationship: innervates UBERON:0000966 ! retina +relationship: part_of UBERON:0002104 ! visual system + +[Term] +id: UBERON:0000942 +name: frontal nerve (branch of ophthalmic) +def: "The frontal nerve is the largest branch of the ophthalmic, and may be regarded, both from its size and direction, as the continuation of the nerve. It enters the orbit through the supraorbital foramen, and runs forward between the Levator palpebræ superioris and the periosteum. Midway between the apex and base of the orbit it divides into two branches, supratrochlear nerve and supraorbital nerve. [WP,unvetted]." [http://en.wikipedia.org/wiki/Frontal_nerve] +subset: uberon_slim +synonym: "frontal nerve" EXACT [FMA:52638] +synonym: "nervus frontalis" RELATED LATIN [http://en.wikipedia.org/wiki/Frontal_nerve] +xref: FMA:52638 +xref: Frontal:nerve +xref: http://linkedlifedata.com/resource/umls/id/C0228712 +xref: http://www.snomedbrowser.com/Codes/Details/280219004 +xref: NCIT:C32638 +xref: UMLS:C0228712 {source="ncithesaurus:Frontal_Nerve"} +is_a: UBERON:0011779 ! nerve of head region +relationship: branching_part_of UBERON:0000348 {source="FMA"} ! ophthalmic nerve +relationship: part_of UBERON:0000348 ! ophthalmic nerve + +[Term] +id: UBERON:0000943 +name: obsolete labial sensillum +is_obsolete: true +consider: FBbt:00002721 +consider: WBbt:0005107 + +[Term] +id: UBERON:0000944 +name: obsolete dorsal branch +synonym: "dorsal vein" EXACT [] +synonym: "ramus dorsalis" EXACT LATIN [FMA:76733, FMA:TA] +is_obsolete: true +consider: FBbt:00003051 +consider: FMA:76733 + +[Term] +id: UBERON:0000945 +name: stomach +def: "An expanded region of the vertebrate alimentary tract that serves as a food storage compartment and digestive organ. A stomach is lined, in whole or in part by a glandular epithelium." [http://en.wikipedia.org/wiki/Stomach, https://orcid.org/0000-0002-6601-2165, ISBN:0073040584] +subset: efo_slim +subset: major_organ +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "anterior intestine" RELATED [] +synonym: "gaster" RELATED [BTO:0001307] +synonym: "mesenteron" RELATED [] +synonym: "stomach chamber" NARROW [] +synonym: "ventriculus" RELATED LATIN [http://en.wikipedia.org/wiki/Stomach] +xref: AAO:0000579 +xref: ANISEED:1235297 +xref: BTO:0001307 +xref: CALOHA:TS-0980 +xref: EFO:0000837 +xref: EHDAA2:0001915 +xref: EHDAA:2993 +xref: EMAPA:17021 +xref: EV:0100070 +xref: FMA:7148 +xref: GAID:293 +xref: galen:Stomach +xref: http://en.wikipedia.org/wiki/Stomach +xref: http://linkedlifedata.com/resource/umls/id/C0038351 +xref: http://www.snomedbrowser.com/Codes/Details/181246003 +xref: MA:0000353 +xref: MAT:0000051 +xref: MESH:A03.492.766 +xref: MIAA:0000051 +xref: NCIT:C12391 +xref: OpenCyc:Mx4rvVjlqpwpEbGdrcN5Y29ycA +xref: TAO:0002121 +xref: UMLS:C0038351 {source="ncithesaurus:Stomach"} +xref: VHOG:0000408 +xref: XAO:0000128 +is_a: UBERON:0004921 {source="cjm"} ! subdivision of digestive tract +is_a: UBERON:0010039 {source="cjm"} ! food storage organ +relationship: contributes_to_morphology_of UBERON:0001007 ! digestive system +relationship: part_of UBERON:0001041 ! foregut + +[Term] +id: UBERON:0000946 +name: cardial valve +def: "A membranous fold of the heart that prevents reflux of fluid" [http://www.ncbi.nlm.nih.gov/pubmed/7926784, MESH:A07.541.510, MP:0000285] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "cardiac valve" RELATED [GO:0003170] +synonym: "heart valve" EXACT [] +synonym: "heart valve" RELATED [XAO:0004126] +synonym: "heart valves" RELATED [] +synonym: "stomodaeal valve" RELATED [] +synonym: "valve of heart" EXACT [] +synonym: "valvule" RELATED [] +xref: BTO:0000564 +xref: Cardiac:valve +xref: EMAPA:17869 +xref: EV:0100024 +xref: FMA:7110 +xref: GAID:176 +xref: galen:HeartValve +xref: http://linkedlifedata.com/resource/umls/id/C0018826 +xref: http://www.snomedbrowser.com/Codes/Details/181285005 +xref: MA:0000086 +xref: MESH:D006351 +xref: NCIT:C12729 +xref: OpenCyc:Mx4rv8oyuJwpEbGdrcN5Y29ycA +xref: TAO:0005065 +xref: UMLS:C0018826 {source="ncithesaurus:Cardiac_Valve"} +xref: VHOG:0000818 +xref: XAO:0004126 +xref: ZFA:0005065 +is_a: UBERON:0003978 ! valve +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure +disjoint_from: UBERON:0004754 ! foramen ovale of heart +relationship: develops_from UBERON:0002062 {source="http://www.ncbi.nlm.nih.gov/pubmed/15797462"} ! endocardial cushion +relationship: part_of UBERON:0000948 ! heart + +[Term] +id: UBERON:0000947 +name: aorta +def: "The main trunk of the systemic arterial system that carries blood from the heart to all the organs and other structures of the body, bringing oxygenated blood to all parts of the body in the systemic circulation" [http://en.wikipedia.org/wiki/Aorta, http://orcid.org/0000-0002-6601-2165, ISBN:0-683-40008-8, MESH:A07.231.114.056, MP:0000272] +subset: efo_slim +subset: grouping_class +subset: pheno_slim +subset: uberon_slim +synonym: "arteria maxima" RELATED LATIN [http://en.wikipedia.org/wiki/Aorta] +synonym: "dorsal aorta" NARROW SENSU [http://en.wikipedia.org/wiki/Aorta#In_other_animals, ZFA:0000014] +synonym: "trunk of aortic tree" EXACT [] +synonym: "trunk of systemic arterial tree" EXACT [] +xref: AAO:0010213 +xref: BTO:0000135 +xref: CALOHA:TS-0046 +xref: EFO:0000265 +xref: EMAPA:18601 +xref: EV:0100027 +xref: FMA:3734 +xref: GAID:469 +xref: galen:Aorta +xref: http://en.wikipedia.org/wiki/Aorta +xref: http://linkedlifedata.com/resource/umls/id/C0003483 +xref: http://www.snomedbrowser.com/Codes/Details/181298001 +xref: MA:0000062 +xref: MAT:0000035 +xref: MESH:D001011 +xref: MIAA:0000035 +xref: NCIT:C12669 +xref: OpenCyc:Mx4rvVjvTpwpEbGdrcN5Y29ycA +xref: UMLS:C0003483 {source="ncithesaurus:Aorta"} +xref: VHOG:0001523 +xref: XAO:0003010 +is_a: UBERON:0003509 {source="MA"} ! arterial blood vessel +is_a: UBERON:0003519 ! thoracic cavity blood vessel +is_a: UBERON:0013768 ! great vessel of heart +relationship: part_of UBERON:0010191 {source="EHDAA2"} ! aortic system + +[Term] +id: UBERON:0000948 +name: heart +def: "A myogenic muscular circulatory organ found in the vertebrate cardiovascular system composed of chambers of cardiac muscle. It is the primary circulatory organ." [http://en.wikipedia.org/wiki/Heart, http://orcid.org/0000-0002-6601-2165] +comment: Taxon notes:" the ascidian tube-like heart lacks chambers....The ascidian heart is formed after metamorphosis as a simple tube-like structure with a single-layered myoepithelium that is continuous with a single-layered pericar- dial wall. It lacks chambers and endocardium.... The innovation of the chambered heart was a key event in vertebrate evolution, because the chambered heart generates one-way blood flow with high pressure, a critical requirement for the efficient blood supply of large-body vertebrates... all extant vertebrates have hearts with two or more chambers (Moorman and Christoffels 2003)" DOI:10.1101/gad.1485706 +subset: efo_slim +subset: major_organ +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "branchial heart" NARROW SENSU [] +synonym: "cardium" RELATED [EMAPA:16105] +synonym: "chambered heart" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "Herz@de" RELATED [BTO:0000562] +synonym: "vertebrate heart" EXACT [] +xref: AAO:0010210 +xref: BILA:0000020 +xref: BTO:0000562 +xref: CALOHA:TS-0445 +xref: EFO:0000815 +xref: EHDAA2:0000738 +xref: EHDAA:420 +xref: EMAPA:16105 +xref: EV:0100018 +xref: FMA:7088 +xref: GAID:174 +xref: galen:Heart +xref: http://en.wikipedia.org/wiki/Heart +xref: http://linkedlifedata.com/resource/umls/id/C0018787 +xref: http://www.snomedbrowser.com/Codes/Details/302509004 +xref: MA:0000072 +xref: MAT:0000036 +xref: MESH:D006321 +xref: MIAA:0000036 +xref: NCIT:C12727 +xref: OpenCyc:Mx4rvVjvDpwpEbGdrcN5Y29ycA +xref: TAO:0000114 +xref: UMLS:C0018787 {source="ncithesaurus:Heart"} +xref: VHOG:0000276 +xref: XAO:0000064 +xref: ZFA:0000114 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005181 ! thoracic segment organ +is_a: UBERON:0007100 ! primary circulatory organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0007100 ! primary circulatory organ +intersection_of: has_part UBERON:0004151 ! cardiac chamber +relationship: contributes_to_morphology_of UBERON:0004535 ! cardiovascular system +relationship: develops_from UBERON:0004141 ! heart tube +relationship: has_part UBERON:0004151 ! cardiac chamber +relationship: part_of UBERON:0015410 {source="MA"} ! heart plus pericardium + +[Term] +id: UBERON:0000949 +name: endocrine system +def: "Anatomical system that consists of the glands and parts of glands that produce endocrine secretions and help to integrate and control bodily metabolic activity." [http://en.wikipedia.org/wiki/Endocrine_system, NLM:endocrine+system] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "endocrine glandular system" EXACT [EHDAA2:0002224] +synonym: "endocrine system" EXACT [] +synonym: "systema endocrinum" EXACT [] +xref: AAO:0010279 +xref: CALOHA:TS-1301 +xref: EFO:0002969 +xref: EHDAA2:0002224 +xref: EMAPA:35306 +xref: Endocrine:system +xref: EV:0100128 +xref: FBbt:00005068 +xref: FMA:9668 +xref: GAID:439 +xref: http://linkedlifedata.com/resource/umls/id/C0014136 +xref: http://www.snomedbrowser.com/Codes/Details/278876000 +xref: MA:0000012 +xref: MESH:D004703 +xref: NCIT:C12705 +xref: TAO:0001158 +xref: UMLS:C0014136 {source="ncithesaurus:Endocrine_System"} +xref: VHOG:0000098 +xref: XAO:0000158 +xref: ZFA:0001158 +is_a: UBERON:0000467 ! anatomical system +disjoint_from: UBERON:0000990 ! reproductive system +disjoint_from: UBERON:0001004 ! respiratory system +disjoint_from: UBERON:0001007 ! digestive system +disjoint_from: UBERON:0001008 ! renal system +disjoint_from: UBERON:0001009 ! circulatory system +disjoint_from: UBERON:0001016 ! nervous system +disjoint_from: UBERON:0001033 ! gustatory system +disjoint_from: UBERON:0001434 ! skeletal system +disjoint_from: UBERON:0002204 ! musculoskeletal system +disjoint_from: UBERON:0002294 ! biliary system +disjoint_from: UBERON:0002330 ! exocrine system +disjoint_from: UBERON:0002390 ! hematopoietic system +disjoint_from: UBERON:0002405 ! immune system +disjoint_from: UBERON:0002416 ! integumental system +disjoint_from: UBERON:0002423 ! hepatobiliary system +disjoint_from: UBERON:0004456 ! entire sense organ system +relationship: composed_primarily_of UBERON:0002368 ! endocrine gland +relationship: existence_ends_during UBERON:0000066 ! fully formed stage + +[Term] +id: UBERON:0000950 +name: gracilis +def: "The most superficial muscle on the medial side of the thigh. It is thin and flattened, broad above, narrow and tapering below. It arises by a thin aponeurosis from the anterior margins of the lower half of the symphysis pubis and the upper half of the pubic arch." [http://en.wikipedia.org/wiki/Gracilis_muscle] +subset: uberon_slim +synonym: "gracilis muscle" EXACT [BTO:0000536] +synonym: "musculus gracilis" EXACT LATIN [http://en.wikipedia.org/wiki/Gracilis_muscle] +xref: BTO:0000536 +xref: EMAPA:36231 +xref: FMA:43882 +xref: galen:Gracilis +xref: Gracilis:muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224439 +xref: http://www.snomedbrowser.com/Codes/Details/181689005 +xref: MA:0002311 +xref: NCIT:C52935 +xref: OpenCyc:Mx4rv7If8pwpEbGdrcN5Y29ycA +xref: UMLS:C0224439 {source="ncithesaurus:Gracilis"} +is_a: UBERON:0004252 ! hindlimb stylopod muscle +is_a: UBERON:0011144 {source="Wikipedia"} ! adductor muscle of hip +relationship: has_muscle_insertion UBERON:0000979 {notes="pes anserinus", source="dbpedia"} ! tibia + +[Term] +id: UBERON:0000951 +name: rotator muscle of the vertebral column +def: "Any of a number of short transversospinal muscles chiefly developed in cervical, lumbar, and thoracic regions, arising from the transverse process of one vertebra and inserted into the root of the spinous process of the next two or three vertebrae above, with nerve supply from the dorsal branches of the spinal nerve, and whose actions rotate the vertebral column." [http://medical-dictionary.thefreedictionary.com/rotator+muscle] +synonym: "rotator muscle" BROAD [FMA:23081] +xref: FMA:23081 +xref: http://www.snomedbrowser.com/Codes/Details/244872002 +is_a: UBERON:0001630 ! muscle organ +is_a: UBERON:0005174 ! dorsal region element +intersection_of: UBERON:0001630 ! muscle organ +intersection_of: has_muscle_insertion UBERON:0001076 ! neural spine +intersection_of: has_muscle_origin UBERON:0001077 ! transverse process of vertebra +intersection_of: part_of UBERON:0001137 ! dorsum +relationship: has_muscle_insertion UBERON:0001076 ! neural spine +relationship: has_muscle_origin UBERON:0001077 ! transverse process of vertebra + +[Term] +id: UBERON:0000952 +name: obsolete adductor muscle +comment: obsoleted as it conflated a generic functional grouping with a specific group of muscles in the leg/hip +is_obsolete: true +consider: UBERON:0011144 +consider: UBERON:0011145 + +[Term] +id: UBERON:0000953 +name: obsolete visceral muscle +def: "involuntary non-striated muscle." [http://en.wikipedia.org/wiki/Smooth_muscle] +synonym: "adult visceral muscle" RELATED [] +synonym: "smooth muscle" EXACT [] +xref: Smooth:muscle +is_obsolete: true + +[Term] +id: UBERON:0000954 +name: obsolete intestine muscle +def: "intestinal muscle cell, attach to intestine and body wall anterior to anus" [WB:Paper00000653] +subset: uberon_slim +synonym: "intestinal muscle" EXACT [] +is_obsolete: true +consider: FBbt:00003537 +consider: WBbt:0005796 + +[Term] +id: UBERON:0000955 +name: brain +def: "The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals. Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell[WP]." [http://en.wikipedia.org/wiki/Brain, https://github.com/obophenotype/uberon/issues/300] +subset: cumbo +subset: efo_slim +subset: major_organ +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "encephalon" RELATED [BTO:0000142] +synonym: "suprasegmental levels of nervous system" RELATED [NeuroNames:21] +synonym: "suprasegmental structures" RELATED [NeuroNames:21] +synonym: "synganglion" RELATED [] +synonym: "the brain" RELATED [NeuroNames:21] +xref: AAO:0010478 +xref: ABA:Brain +xref: BAMS:Br +xref: BAMS:Brain +xref: BILA:0000135 +xref: BIRNLEX:796 +xref: BTO:0000142 +xref: CALOHA:TS-0095 +xref: DHBA:10155 +xref: EFO:0000302 +xref: EHDAA2:0000183 +xref: EHDAA:2641 +xref: EHDAA:6485 +xref: EMAPA:16894 +xref: EV:0100164 +xref: FBbt:00005095 +xref: FMA:50801 +xref: GAID:571 +xref: galen:Brain +xref: HBA:4005 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=21 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=21 {source="BIRNLEX:796"} +xref: http://en.wikipedia.org/wiki/Brain +xref: http://linkedlifedata.com/resource/umls/id/C0006104 +xref: http://linkedlifedata.com/resource/umls/id/C1269537 +xref: http://www.snomedbrowser.com/Codes/Details/258335003 +xref: MA:0000168 +xref: MAT:0000098 +xref: MBA:8 +xref: MBA:997 +xref: MESH:D001921 +xref: MIAA:0000098 +xref: NCIT:C12439 +xref: OpenCyc:Mx4rvVjT65wpEbGdrcN5Y29ycA +xref: PBA:3999 +xref: TAO:0000008 +xref: UMLS:C0006104 {source="ncithesaurus:Brain"} +xref: UMLS:C0006104 {source="BIRNLEX:796"} +xref: UMLS:C1269537 {source="BIRNLEX:796"} +xref: VHOG:0000157 +xref: XAO:0000010 +xref: ZFA:0000008 +is_a: UBERON:0000062 {source="GO"} ! organ +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: contributes_to_morphology_of UBERON:0001016 ! nervous system +property_value: dc-contributor https://github.com/cmungall +relationship: develops_from UBERON:0006238 ! future brain +relationship: existence_ends_during UBERON:0000066 ! fully formed stage +relationship: immediate_transformation_of UBERON:0006238 {source="Bgee:AN"} ! future brain +relationship: in_anterior_side_of UBERON:0000468 ! multicellular organism +relationship: part_of UBERON:0001017 {source="FMA"} ! central nervous system + +[Term] +id: UBERON:0000956 +name: cerebral cortex +def: "The thin layer of gray matter on the surface of the cerebral hemisphere that develops from the telencephalon. It consists of the neocortex (6 layered cortex or isocortex), the hippocampal formation and the olfactory cortex." [BIRNLEX:1494] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "brain cortex" RELATED [BTO:0000233] +synonym: "cortex cerebralis" RELATED LATIN [NeuroNames:39] +synonym: "cortex cerebri" RELATED LATIN [http://en.wikipedia.org/wiki/Cerebral_cortex] +synonym: "cortex of cerebral hemisphere" EXACT [BTO:0000233, FMA:61830] +synonym: "cortical plate (areas)" RELATED [NeuroNames:39] +synonym: "cortical plate (CTXpl)" RELATED [NeuroNames:39] +synonym: "pallium of the brain" RELATED [BTO:0000233] +xref: BAMS:C +xref: BAMS:Cerebral_cortex +xref: BAMS:CTX +xref: BAMS:Cx +xref: BIRNLEX:1494 +xref: BM:Tel-Cx +xref: BTO:0000233 +xref: CALOHA:TS-0091 +xref: Cerebral:cortex +xref: DHBA:10159 +xref: EFO:0000328 +xref: EHDAA2:0000234 +xref: EHDAA:5464 +xref: EMAPA:17544 +xref: EV:0100166 +xref: FMA:61830 +xref: GAID:629 +xref: HBA:4008 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=39 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=39 {source="BIRNLEX:1494"} +xref: http://linkedlifedata.com/resource/umls/id/C0007776 +xref: http://www.snomedbrowser.com/Codes/Details/362880003 +xref: MA:0000185 +xref: MAT:0000108 +xref: MBA:688 +xref: MESH:A08.186.211.730.885.213 +xref: MIAA:0000108 +xref: NCIT:C12443 +xref: PBA:128011354 +xref: UMLS:C0007776 {source="BIRNLEX:1494"} +xref: UMLS:C0007776 {source="ncithesaurus:Cortex"} +xref: VHOG:0000722 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0016548 {source="FMA"} ! central nervous system gray matter layer +relationship: contributes_to_morphology_of UBERON:0001893 ! telencephalon +relationship: has_developmental_contribution_from UBERON:0004035 ! cortical subplate +relationship: has_developmental_contribution_from UBERON:0005343 ! cortical plate +relationship: part_of UBERON:0000203 {source="GO", source="ISBN:0471888893"} ! pallium +relationship: part_of UBERON:0005401 {source="FMA", source="MA"} ! cerebral hemisphere gray matter +relationship: present_in_taxon NCBITaxon:117569 + +[Term] +id: UBERON:0000957 +name: lamina +def: "Any thin layer or plate." [http://en.wikipedia.org/wiki/Lamina_of_the_vertebral_arch] +subset: non_informative +subset: uberon_slim +subset: upper_level +synonym: "laminar tissue" EXACT [] +xref: http://en.wikipedia.org/wiki/Lamina_of_the_vertebral_arch +is_a: UBERON:0000479 ! tissue + +[Term] +id: UBERON:0000958 +name: medulla of organ +def: "Middle part of an organ, surrounded by the cortex." [http://orcid.org/0000-0002-6601-2165] +subset: upper_level +synonym: "medulla" EXACT [FMA:61108] +xref: FMA:61108 +xref: galen:Medulla +is_a: UBERON:0000471 ! compound organ component +relationship: surrounded_by UBERON:0001851 ! cortex + +[Term] +id: UBERON:0000959 +name: optic chiasma +def: "A decussation of the diencephalon where the fibers of the optic nerve cross" [http://en.wikipedia.org/wiki/Optic_chiasm, http://orcid.org/0000-0002-6601-2165, MGI:llw2, MP:0009770] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "chiasma" RELATED LATIN [NeuroNames:459] +synonym: "chiasma nervorum opticorum" RELATED LATIN [NeuroNames:459] +synonym: "chiasma opticum" EXACT LATIN [http://en.wikipedia.org/wiki/Optic_chiasm] +synonym: "decussation of optic nerve fibers" EXACT [FMA:62045] +synonym: "optic chiasm" EXACT [http://en.wikipedia.org/wiki/Optic_chiasm] +synonym: "optic chiasm (Rufus of Ephesus)" RELATED [NeuroNames:459] +xref: AAO:0010622 +xref: BAMS:DC +xref: BAMS:OC +xref: BAMS:och +xref: BAMS:ox +xref: BIRNLEX:1416 +xref: BM:Tel-OCX +xref: DHBA:10644 +xref: DMBA:17783 +xref: EHDAA2:0001302 +xref: EHDAA:10227 +xref: EMAPA:17603 +xref: FMA:62045 +xref: GAID:832 +xref: HBA:9310 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=459 {source="BIRNLEX:1416"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=459 +xref: http://linkedlifedata.com/resource/umls/id/C0029126 +xref: http://www.snomedbrowser.com/Codes/Details/244453006 +xref: MA:0001098 +xref: MBA:117 +xref: MESH:D009897 +xref: NCIT:C90609 +xref: Optic:chiasm +xref: TAO:0000556 +xref: UMLS:C0029126 {source="BIRNLEX:1416"} +xref: UMLS:C0029126 {source="ncithesaurus:Optic_Chiasm"} +xref: VHOG:0000190 +xref: XAO:0004071 +xref: ZFA:0000556 +is_a: UBERON:0007425 ! decussation of diencephalon +intersection_of: UBERON:0007418 ! neural decussation +intersection_of: extends_fibers_into UBERON:0000941 ! cranial nerve II +intersection_of: extends_fibers_into UBERON:0001908 ! optic tract +intersection_of: part_of UBERON:0001894 ! diencephalon +relationship: extends_fibers_into UBERON:0000941 ! cranial nerve II +relationship: extends_fibers_into UBERON:0001908 ! optic tract + +[Term] +id: UBERON:0000960 +name: obsolete pharyngeal nerve +def: "OBSOLETE. Original definition: The pharyngeal nerve (pterygopalatine nerve) is a small branch arising from the posterior part of the pterygopalatine ganglion. It passes through the pharyngeal canal with the pharyngeal branch of the maxillary artery, and is distributed to the mucous membrane of the nasal part of the pharynx, behind the auditory tube. [WP,unvetted]." [http://en.wikipedia.org/wiki/Pharyngeal_nerve] +subset: uberon_slim +xref: Pharyngeal:nerve +is_obsolete: true +consider: FBbt:00004021 +consider: FMA:77524 +consider: WBbt:0005441 + +[Term] +id: UBERON:0000961 +name: thoracic ganglion +def: "The thoracic ganglia are paravertebral ganglia. The thoracic portion of the sympathetic trunk typically has 12 thoracic ganglia. Emerging from the ganglia are thoracic splancic nerves (the cardiopulmonary, the greater, lesser, and least splanchic nerves) that help provide sympathetic innervation to abdominal structures. Also, the ganglia of the thoracic sympathetic trunk have both white and gray rami communicantes. The white rami carry sympathetic fibers arising in the spinal cord into the sympathetic trunk. [WP,unvetted]." [http://en.wikipedia.org/wiki/Thoracic_ganglion] +subset: uberon_slim +synonym: "ganglion of thorax" EXACT [OBOL:automatic] +synonym: "ganglion thoracicum splanchnicum" EXACT LATIN [FMA:6471, FMA:TA] +synonym: "thoracic paravertebral ganglion" EXACT [MA:0001159] +synonym: "thoracic splanchnic ganglion" EXACT [] +synonym: "thoracic sympathetic ganglion" EXACT [] +synonym: "thorax ganglion" EXACT [OBOL:automatic] +xref: BTO:0001831 +xref: EHDAA:4664 +xref: EMAPA:17158 +xref: FMA:6471 +xref: http://linkedlifedata.com/resource/umls/id/C0229010 +xref: http://www.snomedbrowser.com/Codes/Details/181102004 +xref: MA:0001159 +xref: NCIT:C52829 +xref: RETIRED_EHDAA2:0002012 +xref: Thoracic:ganglion +xref: UMLS:C0229010 {source="ncithesaurus:Thoracic_Ganglion"} +xref: VHOG:0000515 +is_a: UBERON:0001807 ! paravertebral ganglion +is_a: UBERON:0005181 ! thoracic segment organ +intersection_of: UBERON:0001807 ! paravertebral ganglion +intersection_of: part_of UBERON:0004863 ! thoracic sympathetic nerve trunk +relationship: extends_fibers_into UBERON:0018679 ! thoracic splanchnic nerve +relationship: part_of UBERON:0004863 ! thoracic sympathetic nerve trunk + +[Term] +id: UBERON:0000962 +name: nerve of cervical vertebra +def: "The cervical nerves are the spinal nerves from the cervical vertebrae. Although there are seven cervical vertebrae (C1-C7), there are eight cervical nerves (C1-C8). All nerves except C8 emerge above their corresponding vertebrae, while the C8 nerve emerges below the C7 vertebra. (In the other portions of the spine, the nerve emerges below the vertebra with the same name. Dorsal (posterior) distribution includes the greater occipital (C2) and third occipital (C3). Ventral (anterior) distribution includes the cervical plexus (C1-C4) and brachial plexus (C5-C8) [WP,unvetted]." [http://en.wikipedia.org/wiki/Cervical_nerves] +comment: Innervates: sternohyoid muscle, sternothyroid muscle, omohyoid muscle[WP] +subset: uberon_slim +synonym: "cervical nerve" EXACT [FMA:5859] +synonym: "cervical nerve tree" EXACT [] +synonym: "cervical spinal nerve" EXACT [] +synonym: "nervus cervicalis" EXACT LATIN [FMA:5859, FMA:TA] +xref: BAMS:cern +xref: Cervical:nerves +xref: FMA:5859 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2351 +xref: http://linkedlifedata.com/resource/umls/id/C0228815 +xref: http://www.snomedbrowser.com/Codes/Details/360497008 +xref: NCIT:C32299 +xref: NLXANAT:20090207 +xref: UMLS:C0228815 {source="ncithesaurus:Cervical_Nerve"} +is_a: UBERON:0001780 ! spinal nerve +intersection_of: UBERON:0001780 ! spinal nerve +intersection_of: extends_fibers_into UBERON:0002726 ! cervical spinal cord +relationship: extends_fibers_into UBERON:0002726 ! cervical spinal cord + +[Term] +id: UBERON:0000963 +name: head sensillum +xref: FBbt:00004114 +xref: MAT:0000204 +xref: MIAA:0000204 +is_a: UBERON:0002536 ! arthropod sensillum +intersection_of: UBERON:0002536 ! arthropod sensillum +intersection_of: part_of UBERON:0000033 ! head +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0000964 +name: cornea +def: "the transparent anterior portion of the fibrous coat of the eye that serves as the chief refractory structure" [ISBN:0-683-40008-8, MESH:A09.371.060.217, MP:0001312] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "cornea of camera-type eye" EXACT [GO:0061303] +synonym: "corneas" RELATED PLURAL [ZFA:0000640] +synonym: "tunica cornea" RELATED [] +xref: AAO:0010344 +xref: BTO:0000286 +xref: CALOHA:TS-0171 +xref: EFO:0000377 +xref: EHDAA2:0000316 +xref: EHDAA:10199 +xref: EMAPA:17161 +xref: EV:0100341 +xref: FMA:58238 +xref: GAID:892 +xref: http://en.wikipedia.org/wiki/Cornea +xref: http://linkedlifedata.com/resource/umls/id/C0010031 +xref: http://www.snomedbrowser.com/Codes/Details/181162001 +xref: MA:0000266 +xref: MESH:D003315 +xref: NCIT:C12342 +xref: OpenCyc:Mx4rvViBa5wpEbGdrcN5Y29ycA +xref: TAO:0000640 +xref: UMLS:C0010031 {source="ncithesaurus:Cornea"} +xref: VHOG:0000164 +xref: XAO:0000180 +xref: ZFA:0000640 +is_a: UBERON:0003102 {source="XAO"} ! surface structure +is_a: UBERON:0010000 ! multicellular anatomical structure +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: continuous_with UBERON:0001773 ! sclera +relationship: contributes_to_morphology_of UBERON:0001801 ! anterior segment of eyeball +relationship: developmentally_induced_by UBERON:0005426 ! lens vesicle +relationship: develops_from UBERON:0004348 {evidence="definitional"} ! optic eminence +relationship: develops_from UBERON:0005427 ! corneal primordium +relationship: has_part UBERON:0001772 ! corneal epithelium +relationship: has_part UBERON:0004370 ! anterior limiting lamina of cornea +relationship: part_of UBERON:0001801 {source="MA"} ! anterior segment of eyeball +relationship: part_of UBERON:0010409 {source="MA"} ! ocular surface region +relationship: part_of UBERON:0012430 {source="FMA-isa"} ! tunica fibrosa of eyeball + +[Term] +id: UBERON:0000965 +name: lens of camera-type eye +def: "Transparent part of camera-type eye that helps to refract light to be focused on the retina." [http://en.wikipedia.org/wiki/Lens_(anatomy), http://orcid.org/0000-0002-6601-2165] +comment: The lens is avascular and nourished by diffusion from the aqueous and vitreous +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "camera-type eye lens" EXACT [GO:0002088] +synonym: "crystalline lens" RELATED [BTO:0000723] +synonym: "eye lens" EXACT SENSU [] +synonym: "lens" EXACT SENSU [] +synonym: "lens crystallina" EXACT [http://en.wikipedia.org/wiki/Lens_(anatomy)] +synonym: "lenses" RELATED PLURAL [ZFA:0000035] +synonym: "ocular lens" RELATED [BTO:0000723] +xref: AAO:0010348 +xref: BTO:0000723 +xref: CALOHA:TS-0545 +xref: EHDAA:9057 +xref: EMAPA:17838 +xref: EV:0100343 +xref: FMA:58241 +xref: http://linkedlifedata.com/resource/umls/id/C0023317 +xref: http://www.snomedbrowser.com/Codes/Details/181169005 +xref: Lens:(anatomy) +xref: MA:0000275 +xref: MAT:0000141 +xref: MESH:A09.371.509 +xref: MIAA:0000141 +xref: NCIT:C12743 +xref: OpenCyc:Mx4rvVj0fZwpEbGdrcN5Y29ycA +xref: RETIRED_EHDAA2:0000975 +xref: TAO:0000035 +xref: UMLS:C0023317 {source="ncithesaurus:Crystalline_Lens"} +xref: VHOG:0000169 +xref: XAO:0000008 +xref: ZFA:0000035 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005389 ! transparent eye structure +relationship: contributes_to_morphology_of UBERON:0001801 ! anterior segment of eyeball +relationship: developmentally_induced_by UBERON:0003902 ! retinal neural layer +relationship: develops_from UBERON:0005426 ! lens vesicle +relationship: part_of UBERON:0001801 ! anterior segment of eyeball + +[Term] +id: UBERON:0000966 +name: retina +def: "The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates." [http://en.wikipedia.org/wiki/Retina, ZFIN:curator] +comment: Currently this class encompasses only verteberate AOs but could in theory also include cephalopod - we may want to make a more specific class for vertebrate retina. note that this class excludes ommatidial retinas, as the retina must be part of an eyeball. Use the parent class photoreceptor array / light-sensitive tissue for arthropods +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "inner layer of eyeball" EXACT [] +synonym: "Netzhaut" RELATED [BTO:0001175] +synonym: "retina of camera-type eye" EXACT [GO:0060041] +synonym: "retinas" RELATED PLURAL [ZFA:0000152] +synonym: "tunica interna of eyeball" EXACT [] +xref: AAO:0010352 +xref: BAMS:R +xref: BIRNLEX:1153 +xref: BTO:0001175 +xref: CALOHA:TS-0865 +xref: EFO:0000832 +xref: EHDAA2:0001627 +xref: EHDAA:4757 +xref: EMAPA:17168 +xref: EV:0100348 +xref: FMA:58301 +xref: GAID:755 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1862 +xref: http://en.wikipedia.org/wiki/Retina +xref: http://linkedlifedata.com/resource/umls/id/C0035298 +xref: http://linkedlifedata.com/resource/umls/id/C1278894 +xref: http://www.snomedbrowser.com/Codes/Details/181171005 +xref: MA:0000276 +xref: MAT:0000142 +xref: MBA:304325711 +xref: MESH:D012160 +xref: MIAA:0000142 +xref: NCIT:C12343 +xref: NIFSTD_RETIRED:birnlex_1156 +xref: OpenCyc:Mx4rvViTfpwpEbGdrcN5Y29ycA +xref: TAO:0000152 +xref: UMLS:C0035298 {source="BIRNLEX:1153"} +xref: UMLS:C0035298 {source="ncithesaurus:Retina"} +xref: UMLS:C1278894 {source="BIRNLEX:1153"} +xref: VHOG:0000229 +xref: XAO:0000009 +xref: ZFA:0000152 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005388 ! photoreceptor array +relationship: develops_from UBERON:0003072 {source="EHDAA2"} ! optic cup +relationship: part_of UBERON:0001802 ! posterior segment of eyeball +relationship: part_of UBERON:0019207 ! chorioretinal region + +[Term] +id: UBERON:0000967 +name: obsolete adult thoracic sensillum +synonym: "arthropod sensillum of thorax" EXACT [OBOL:automatic] +synonym: "sensillum of thorax" EXACT [OBOL:automatic] +synonym: "thoracic sensillum" EXACT [] +synonym: "thorax arthropod sensillum" EXACT [OBOL:automatic] +synonym: "thorax sensillum" EXACT [OBOL:automatic] +is_obsolete: true +consider: FBbt:00004245 +consider: MAT:0000205 +consider: MIAA:0000205 + +[Term] +id: UBERON:0000968 +name: obsolete adult abdominal sensillum +synonym: "abdomen arthropod sensillum" EXACT [OBOL:automatic] +synonym: "abdomen sensillum" EXACT [OBOL:automatic] +synonym: "abdominal sensillum" EXACT [] +synonym: "arthropod sensillum of abdomen" EXACT [OBOL:automatic] +synonym: "sensillum of abdomen" EXACT [OBOL:automatic] +is_obsolete: true +consider: FBbt:00004461 +consider: MAT:0000206 +consider: MIAA:0000206 + +[Term] +id: UBERON:0000969 +name: obsolete joint connecting hardened body parts +is_obsolete: true + +[Term] +id: UBERON:0000970 +name: eye +def: "An organ that detects light." [https://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: functional_classification +subset: major_organ +subset: organ_slim +subset: uberon_slim +synonym: "light-detecting organ" RELATED [] +synonym: "visual apparatus" RELATED [EV:0100336] +xref: BILA:0000017 +xref: BTO:0000439 +xref: CALOHA:TS-0309 +xref: EFO:0000827 +xref: EV:0100336 +xref: FBbt:00005162 +xref: GAID:69 +xref: http://en.wikipedia.org/wiki/Eye +xref: MAT:0000140 +xref: MESH:D005123 +xref: MIAA:0000140 +xref: OpenCyc:Mx4rvViTvpwpEbGdrcN5Y29ycA +is_a: UBERON:0000020 ! sense organ +relationship: part_of UBERON:0002104 ! visual system + +[Term] +id: UBERON:0000971 +name: ommatidium +def: "The smallest morphological and functional unit of the compound eye that consists of a usually limited and often constant number of rhabdomeric photoreceptor cells, cornea-secreting epithelial cells, and interommatidial pigment cells, and may additionally contain crystalline cone cells." [http://www.ncbi.nlm.nih.gov/pubmed/21062451] +subset: uberon_slim +synonym: "omatidia" RELATED PLURAL [] +synonym: "omatidium" EXACT [] +xref: BTO:0001922 +xref: FBbt:00004510 +xref: HAO:0000666 +xref: http://en.wikipedia.org/wiki/Ommatidium +xref: MAT:0000143 +xref: MIAA:0000143 +is_a: UBERON:0000970 {source="http://www.ncbi.nlm.nih.gov/pubmed/21062451"} ! eye +is_a: UBERON:0002536 ! arthropod sensillum +relationship: part_of UBERON:0000018 ! compound eye + +[Term] +id: UBERON:0000972 +name: antenna +def: "The paired, usually multiple jointed, sensory organs articulating on the procephalic region of the head capsule; its highly versatile sensory structures are capable to detect the various environmental stimuli. In the context of Drosophila refers to they are the most anterior segmented sensory appendage of the head." [FB:gg, http://en.wikipedia.org/wiki/Antenna_(biology), ISBN:3110148986] +subset: efo_slim +subset: uberon_slim +synonym: "feeler" RELATED [BTO:0000074] +xref: AEO:0000198 +xref: Antenna:(biology) +xref: BTO:0000074 +xref: EFO:0000874 +xref: FBbt:00004511 +xref: HAO:0000101 +xref: MAT:0000086 +xref: MIAA:0000086 +xref: OpenCyc:Mx4rvVjSAZwpEbGdrcN5Y29ycA +xref: TGMA:0000007 +is_a: UBERON:0000026 {source="FBbt"} ! appendage +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0000033 ! head +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0000973 +name: obsolete labrum +is_obsolete: true + +[Term] +id: UBERON:0000974 +name: neck +def: "An organism subdivision that extends from the head to the pectoral girdle, encompassing the cervical vertebral column." [http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "collum" RELATED LATIN [http://en.wikipedia.org/wiki/Neck] +synonym: "neck (volume)" RELATED [FMA:7155] +xref: AEO:0000108 +xref: BTO:0000420 +xref: CALOHA:TS-2045 +xref: EFO:0000967 +xref: EHDAA2:0003108 +xref: EMAPA:35587 +xref: FMA:7155 +xref: GAID:86 +xref: galen:Neck +xref: http://en.wikipedia.org/wiki/Neck +xref: http://linkedlifedata.com/resource/umls/id/C0027530 +xref: http://www.snomedbrowser.com/Codes/Details/302550007 +xref: MA:0000024 +xref: MAT:0000297 +xref: MESH:D009333 +xref: MIAA:0000297 +xref: NCIT:C13063 +xref: OpenCyc:Mx4rvVjLF5wpEbGdrcN5Y29ycA +xref: UMLS:C0027530 {source="ncithesaurus:Neck"} +is_a: UBERON:0000475 ! organism subdivision +relationship: anteriorly_connected_to UBERON:0000033 ! head +relationship: dubious_for_taxon NCBITaxon:32443 {source="ISBN:9780674021839"} +relationship: part_of UBERON:0007811 ! craniocervical region +relationship: posteriorly_connected_to UBERON:0002100 ! trunk + +[Term] +id: UBERON:0000975 +name: sternum +def: "A midventral endochondral skeletal element which represents the origin site of the pectoral muscles[PHENOSCAPE:ad]." [https://github.com/obophenotype/uberon/issues/67, PHENOSCAPE:ad] +subset: pheno_slim +subset: uberon_slim +synonym: "breastbone" RELATED [BTO:0001302] +synonym: "vertebrate sternum" EXACT [] +xref: AAO:0000765 +xref: BTO:0001302 +xref: CALOHA:TS-0972 +xref: EHDAA2:0001914 +xref: EHDAA:9561 +xref: EMAPA:18344 +xref: FMA:7485 +xref: GAID:246 +xref: galen:Sternum +xref: http://en.wikipedia.org/wiki/Sternum +xref: http://linkedlifedata.com/resource/umls/id/C0038293 +xref: http://www.snomedbrowser.com/Codes/Details/302522007 +xref: MA:0001331 +xref: MESH:D013249 +xref: NCIT:C12793 +xref: OpenCyc:Mx4rvVjO6JwpEbGdrcN5Y29ycA +xref: UMLS:C0038293 {source="ncithesaurus:Sternum"} +xref: VHOG:0000856 +is_a: UBERON:0005181 ! thoracic segment organ +is_a: UBERON:0010363 {source="ISBN:0073040584"} ! endochondral element +relationship: connected_to UBERON:0002228 ! rib +relationship: connected_to UBERON:0007831 ! pectoral girdle skeleton +relationship: contributes_to_morphology_of UBERON:0003252 ! thoracic rib cage +property_value: dc-contributor https://github.com/alex-dececchi +property_value: dc-contributor https://github.com/cmungall +relationship: part_of UBERON:0003252 {source="FMA"} ! thoracic rib cage + +[Term] +id: UBERON:0000976 +name: humerus +def: "Paired endochondral long bone that extends between the pectoral girdle and the skeletal parts of the forelimb. [PHENOSCAPE:mah]" [AAO:0000679, https://github.com/obophenotype/uberon/issues/106, PHENOSCAPE:mah] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "humeri" EXACT PLURAL [PHENOSCAPE:ad] +synonym: "humerus bone" EXACT [] +synonym: "mesomere 1 of pectoral appendage" RELATED HOMOLOGY [ISBN:0226313409] +synonym: "proximal metapterygial mesomere of pectoral appendage" RELATED HOMOLOGY [ISBN:0226313409] +synonym: "proximal metapterygial mesomere of pectoral fin" RELATED HOMOLOGY [ISBN:0226313409] +xref: AAO:0000679 +xref: CALOHA:TS-2202 +xref: EFO:0001398 +xref: EMAPA:19106 +xref: FMA:13303 +xref: GAID:183 +xref: galen:Humerus +xref: http://en.wikipedia.org/wiki/Humerus +xref: http://linkedlifedata.com/resource/umls/id/C0020164 +xref: http://www.snomedbrowser.com/Codes/Details/181923006 +xref: MA:0001356 +xref: MESH:A02.835.232.087.412 +xref: NCIT:C12731 +xref: UMLS:C0020164 {source="ncithesaurus:Humerus"} +xref: VHOG:0001158 +xref: XAO:0003210 +is_a: UBERON:0003461 ! shoulder bone +is_a: UBERON:0003607 ! forelimb long bone +is_a: UBERON:0004250 ! upper arm bone +is_a: UBERON:0015053 ! humerus endochondral element +intersection_of: UBERON:0015053 ! humerus endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +relationship: develops_from UBERON:0006245 {evidence="definitional"} ! humerus cartilage element +relationship: proximally_connected_to UBERON:0007831 ! pectoral girdle skeleton + +[Term] +id: UBERON:0000977 +name: pleura +def: "The invaginated serous membrane that surrounds the lungs (the visceral portion) and lines the walls of the pleural cavity (parietal portion)." [http://en.wikipedia.org/wiki/Pulmonary_pleurae, https://github.com/obophenotype/uberon/issues/1231, ISBN:0-683-40008-8, MP:0010820, UBERON:cjm] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "pleura" RELATED [] +synonym: "pleural tissue" RELATED [BTO:0001791, NCIT:C12469] +synonym: "wall of pleural sac" EXACT [] +xref: BTO:0001791 +xref: CALOHA:TS-2081 +xref: EFO:0001980 +xref: EMAPA:16775 +xref: EV:0100044 +xref: FMA:9583 +xref: GAID:360 +xref: http://en.wikipedia.org/wiki/Pleura +xref: http://linkedlifedata.com/resource/umls/id/C0032225 +xref: http://www.snomedbrowser.com/Codes/Details/181609007 +xref: MA:0000433 +xref: MESH:D010994 +xref: NCIT:C12469 +xref: OpenCyc:Mx4rv3zwLZwpEbGdrcN5Y29ycA +xref: UMLS:C0032225 {source="ncithesaurus:Pleural_Tissue"} +xref: VHOG:0000394 +is_a: UBERON:0000042 ! serous membrane +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +intersection_of: UBERON:0000042 ! serous membrane +intersection_of: has_part UBERON:0002400 ! parietal pleura +intersection_of: has_part UBERON:0002401 ! visceral pleura +intersection_of: part_of UBERON:0009778 ! pleural sac +relationship: contributes_to_morphology_of UBERON:0001004 ! respiratory system +relationship: develops_from UBERON:0003081 ! lateral plate mesoderm +relationship: has_part UBERON:0002400 ! parietal pleura +relationship: has_part UBERON:0002401 ! visceral pleura +relationship: part_of UBERON:0009778 {source="https://github.com/obophenotype/uberon/issues/86"} ! pleural sac +relationship: present_in_taxon NCBITaxon:8782 {source="BGEE:AN", source="ISBN:978-0030223693"} + +[Term] +id: UBERON:0000978 +name: leg +def: "The portion of the hindlimb that contains both the stylopod and zeugopod." [http://en.wikipedia.org/wiki/Leg#Limb] +comment: we use the less open to misinterpretation 'hindlimb zeugopod'. Editor note: currently declared as overlapping foot, as AOs disagree over whether some ankle parts are in the leg or foot +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "lower extremity" RELATED [MESH:A01.378.610] +synonym: "tetrapod leg" EXACT [] +xref: BTO:0000721 +xref: CALOHA:TS-2206 +xref: EFO:0001411 +xref: EHDAA2:0000972 +xref: EHDAA:5151 +xref: EHDAA:6176 +xref: EHDAA:8289 +xref: EMAPA:17489 +xref: GAID:49 +xref: Limb +xref: MA:0000047 +xref: MESH:D035002 +xref: OpenCyc:Mx4rvViYzZwpEbGdrcN5Y29ycA +xref: VHOG:0000345 +is_a: UBERON:0006058 ! multi-limb segment region +is_a: UBERON:0008784 ! lower limb segment +relationship: distally_connected_to UBERON:0002387 ! pes +relationship: proximally_connected_to UBERON:0001464 ! hip + +[Term] +id: UBERON:0000979 +name: tibia +def: "The major preaxial endochondral bone in the posterior zeugopod[Phenoscape]." [PHENOSCAPE:mah] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "shankbone" EXACT [http://en.wikipedia.org/wiki/Tibia] +synonym: "shinbone" EXACT [http://en.wikipedia.org/wiki/Tibia] +xref: AAO:0000890 +xref: BTO:0001252 +xref: CALOHA:TS-1048 +xref: EFO:0003054 +xref: EMAPA:19142 +xref: FMA:24476 +xref: GAID:204 +xref: galen:Tibia +xref: http://en.wikipedia.org/wiki/Tibia +xref: http://linkedlifedata.com/resource/umls/id/C0040184 +xref: http://www.snomedbrowser.com/Codes/Details/182061009 +xref: MA:0001361 +xref: MESH:A02.835.232.500.883 +xref: NCIT:C12800 +xref: OpenCyc:Mx4rvtq3-ZwpEbGdrcN5Y29ycA +xref: UMLS:C0040184 {source="ncithesaurus:Tibia"} +is_a: UBERON:0003608 ! hindlimb long bone +is_a: UBERON:0004251 ! hindlimb zeugopod bone +is_a: UBERON:0015004 ! tibia endochondral element +intersection_of: UBERON:0015004 ! tibia endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010849 ! tibia cartilage element +relationship: preaxialmost_part_of UBERON:0010720 ! hindlimb zeugopod skeleton + +[Term] +id: UBERON:0000980 +name: trochanter +def: "A bony prominence near the extremity of the femur that normally serves as attachment points for hip and thigh muscles[MP,modified]" [MP:0004627] +subset: pheno_slim +subset: uberon_slim +synonym: "femoral trochanter" EXACT [AAO:0000897] +synonym: "trochanter of femur" EXACT [] +xref: AAO:0000897 +xref: FMA:82513 +xref: http://en.wikipedia.org/wiki/Trochanter +xref: http://linkedlifedata.com/resource/umls/id/C0162370 +xref: http://www.snomedbrowser.com/Codes/Details/182047004 +xref: MA:0002821 +xref: NCIT:C33814 +xref: UMLS:C0162370 {source="ncithesaurus:Trochanter"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +relationship: contributes_to_morphology_of UBERON:0000981 ! femur +relationship: part_of UBERON:0000981 {source="MA"} ! femur + +[Term] +id: UBERON:0000981 +name: femur +def: "Endochondral longbone connecting the pelvic girdle with posterior zeugopodium skeleton.[VSAO, modified]." [http://en.wikipedia.org/wiki/Femur, VSAO:0000186] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "femoral bone" RELATED [BTO:0001284] +synonym: "mesomere 1 of pevlic appendage" RELATED HOMOLOGY [ISBN:0226313409] +synonym: "os femorale" RELATED LATIN [BTO:0001284] +synonym: "os femoris" RELATED LATIN [BTO:0001284] +synonym: "os longissimum" RELATED LATIN [http://en.wikipedia.org/wiki/Femur] +synonym: "proximal metapterygial mesomere of pelvic appendage" RELATED HOMOLOGY [ISBN:0226313409] +synonym: "proximal metapterygial mesomere of pelvic fin" RELATED HOMOLOGY [ISBN:0226313409] +synonym: "thigh bone" EXACT [] +xref: AAO:0000887 +xref: AAO:0000889 +xref: BTO:0001284 +xref: CALOHA:TS-0322 +xref: EFO:0001396 +xref: EMAPA:19143 +xref: FMA:9611 +xref: GAID:199 +xref: galen:Femur +xref: http://en.wikipedia.org/wiki/Femur +xref: http://linkedlifedata.com/resource/umls/id/C0015811 +xref: http://www.snomedbrowser.com/Codes/Details/182046008 +xref: MA:0001359 +xref: MESH:A02.835.232.500.247 +xref: NCIT:C12717 +xref: OpenCyc:Mx4rvVjOJJwpEbGdrcN5Y29ycA +xref: UMLS:C0015811 {source="ncithesaurus:Femur"} +xref: VHOG:0001159 +xref: VSAO:0000186 +xref: XAO:0003214 +is_a: UBERON:0003608 ! hindlimb long bone +is_a: UBERON:0003826 ! upper leg bone +is_a: UBERON:0008202 {source="MA"} ! bone of hip region +is_a: UBERON:0015052 ! femur endochondral element +intersection_of: UBERON:0015052 ! femur endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010129 {evidence="definitional"} ! femur cartilage element +relationship: proximally_connected_to UBERON:0007832 ! pelvic girdle skeleton + +[Term] +id: UBERON:0000982 +name: skeletal joint +def: "Anatomical cluster that consists of two or more adjacent skeletal structures, which may be interconnected by various types of tissue[VSAO]." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, http://en.wikipedia.org/wiki/Joint, VSAO:0000101] +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "articular joint" RELATED [BTO:0001686] +synonym: "articulation" BROAD [VSAO:0000101] +synonym: "joint" BROAD [FMA:7490, VSAO:0000101] +synonym: "joints" RELATED PLURAL [ZFA:0001596] +xref: AEO:0000182 +xref: BTO:0001686 +xref: CALOHA:TS-2023 +xref: EFO:0000948 +xref: EMAPA:35456 +xref: FMA:7490 +xref: GAID:102 +xref: galen:Joint +xref: http://en.wikipedia.org/wiki/Joint +xref: http://linkedlifedata.com/resource/umls/id/C0022417 +xref: http://www.snomedbrowser.com/Codes/Details/302536002 +xref: MA:0000319 +xref: MAT:0000188 +xref: MESH:D007596 +xref: MIAA:0000188 +xref: NCIT:C13044 +xref: OpenCyc:Mx4rvVjjdpwpEbGdrcN5Y29ycA +xref: RETIRED_EHDAA2:0003182 +xref: TAO:0000367 +xref: UMLS:C0022417 {source="ncithesaurus:Joint"} +xref: VHOG:0001276 +xref: VSAO:0000101 +xref: XAO:0000171 +xref: ZFA:0001596 +is_a: UBERON:0004905 ! articulation +union_of: UBERON:0002217 ! synovial joint +union_of: UBERON:0011134 ! nonsynovial joint +disjoint_from: UBERON:0001474 ! bone element +relationship: connects UBERON:0004765 ! skeletal element +relationship: contributes_to_morphology_of UBERON:0001434 ! skeletal system + +[Term] +id: UBERON:0000983 +name: metatarsus region +def: "A metapodium region that is part of a pes." [OBOL:automatic] +subset: uberon_slim +synonym: "hind metapodium" EXACT [AAO:0000221, http://en.wiktionary.org/wiki/metapodial, MA:th] +synonym: "hindlimb cannon region" NARROW [http://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] +synonym: "hindlimb equine cannon region" NARROW [http://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] +synonym: "metatarsal part of foot" EXACT [FMA:24997] +synonym: "metatarsal region" EXACT [FMA:24997] +synonym: "metatarsus" RELATED [MA:0000049] +synonym: "regio metatarsalis" EXACT LATIN [FMA:24997, FMA:TA] +xref: CALOHA:TS-2221 +xref: FMA:24997 +xref: http://www.snomedbrowser.com/Codes/Details/280711000 +xref: http://www.snomedbrowser.com/Codes/Details/370639003 +xref: MA:0000049 +is_a: UBERON:0008784 ! lower limb segment +is_a: UBERON:0009877 ! metapodium region +intersection_of: UBERON:0009877 ! metapodium region +intersection_of: part_of UBERON:0002387 ! pes +relationship: has_skeleton UBERON:0010545 ! metatarsus skeleton +relationship: part_of UBERON:0012142 {source="PHENOSCAPE:ni"} ! pedal digitopodium region + +[Term] +id: UBERON:0000984 +name: imaginal disc-derived wing +def: "A flight organ of the adult external thorax that is derived from a dorsal mesothoracic disc." [FB:gg] +subset: uberon_slim +synonym: "adult mesothoracic wing" RELATED [] +synonym: "adult metathoracic wing" RELATED [] +synonym: "thoracic wing" RELATED [] +synonym: "thorax wing" RELATED [OBOL:automatic] +synonym: "wing" BROAD SENSU [FBbt:00004729] +synonym: "wing of thorax" RELATED [OBOL:automatic] +xref: FBbt:00004729 +xref: HAO:0001089 +xref: TGMA:0000196 +is_a: UBERON:0000023 ! wing +intersection_of: UBERON:0000023 ! wing +intersection_of: develops_from UBERON:0000939 ! imaginal disc +relationship: develops_from UBERON:0000939 ! imaginal disc + +[Term] +id: UBERON:0000985 +name: axillary vein +def: "Vein that drains the axilla" [http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "subcostal vein" RELATED [] +synonym: "vena axillaris" EXACT LATIN [http://en.wikipedia.org/wiki/Axillary_vein] +xref: Axillary:vein +xref: EMAPA:18758 +xref: FMA:13329 +xref: GAID:527 +xref: galen:AxillaryVein +xref: http://linkedlifedata.com/resource/umls/id/C0004456 +xref: http://www.snomedbrowser.com/Codes/Details/181389002 +xref: MA:0002084 +xref: MESH:D001367 +xref: NCIT:C32171 +xref: OpenCyc:Mx4rwLSHK5wpEbGdrcN5Y29ycA +xref: UMLS:C0004456 {source="ncithesaurus:Axillary_Vein"} +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0009472 ! axilla +relationship: drains UBERON:0009472 ! axilla +relationship: part_of UBERON:0001467 ! shoulder + +[Term] +id: UBERON:0000987 +name: haltere +def: "The capitate stalk on both sides of the thorax having developed from the dorsal metathoracic wing-buds, it is freely movable and capable of vibration, representing the hind wing of Diptera; used for flight balance." [FB:gg, http://en.wikipedia.org/wiki/Haltere, ISBN:3110148986] +subset: efo_slim +subset: uberon_slim +synonym: "balancer organ" RELATED [] +xref: EFO:0000886 +xref: FBbt:00004783 +xref: http://en.wikipedia.org/wiki/Haltere +xref: MAT:0000203 +xref: MIAA:0000203 +xref: OpenCyc:Mx4rwL1JcJwpEbGdrcN5Y29ycA +is_a: UBERON:0000026 {source="FBbt"} ! appendage +relationship: develops_from UBERON:0000939 ! imaginal disc +relationship: part_of UBERON:0000914 ! organismal segment + +[Term] +id: UBERON:0000988 +name: pons +def: "The part of the central nervous system lying between the medulla oblongata and the midbrain, ventral to the cerebellum." [VHOG:0001176] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "pons cerebri" RELATED LATIN [NeuroNames:547] +synonym: "pons of Varolius" EXACT [] +synonym: "pons Varolii" EXACT [ncithesaurus:Pons_Varolii] +xref: BAMS:PONS +xref: BAMS:Pons +xref: BIRNLEX:733 +xref: BM:Pons +xref: BTO:0001101 +xref: CALOHA:TS-0813 +xref: DHBA:10661 +xref: EFO:0001394 +xref: EHDAA2:0004394 +xref: EMAPA:17563 +xref: EV:0100253 +xref: FMA:67943 +xref: GAID:578 +xref: HBA:9131 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=547 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=547 {source="BIRNLEX:733"} +xref: http://en.wikipedia.org/wiki/Pons +xref: http://linkedlifedata.com/resource/umls/id/C0032639 +xref: http://linkedlifedata.com/resource/umls/id/C1280999 +xref: http://www.snomedbrowser.com/Codes/Details/279103004 +xref: MA:0000204 +xref: MAT:0000115 +xref: MBA:771 +xref: MESH:D011149 +xref: MIAA:0000115 +xref: NCIT:C12511 +xref: UMLS:C0032639 {source="BIRNLEX:733"} +xref: UMLS:C0032639 {source="ncithesaurus:Pons_Varolii"} +xref: UMLS:C1280999 {source="BIRNLEX:733"} +xref: VHOG:0001176 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0001895 ! metencephalon +relationship: contributes_to_morphology_of UBERON:0002298 ! brainstem +relationship: dubious_for_taxon NCBITaxon:7955 +relationship: part_of UBERON:0001895 {source="neuronames"} ! metencephalon +relationship: part_of UBERON:0002298 ! brainstem + +[Term] +id: UBERON:0000989 +name: penis +def: "A intromittent organ in certain biologically male organisms. In placental mammals, this also serves as the organ of urination" [http://en.wikipedia.org/wiki/Penis, http://orcid.org/0000-0002-6601-2165, ISBN:0-683-40008-8, MP:0005187] +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "penes" RELATED PLURAL [] +synonym: "phallus" RELATED [] +xref: BTO:0000405 +xref: CALOHA:TS-0758 +xref: EFO:0000987 +xref: EHDAA2:0001433 +xref: EHDAA:9380 +xref: EMAPA:18682 +xref: EMAPA_RETIRED:18996 +xref: EV:0100107 +xref: FMA:9707 +xref: GAID:389 +xref: galen:Penis +xref: http://en.wikipedia.org/wiki/Penis +xref: http://linkedlifedata.com/resource/umls/id/C0030851 +xref: http://www.snomedbrowser.com/Codes/Details/265793009 +xref: MA:0000408 +xref: MAT:0000186 +xref: MESH:D010413 +xref: MIAA:0000186 +xref: NCIT:C12409 +xref: OpenCyc:Mx4rvVjkCZwpEbGdrcN5Y29ycA +xref: UMLS:C0030851 {source="ncithesaurus:Penis"} +xref: VHOG:0000727 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0008811 {source="Wikipedia"} ! intromittent organ +relationship: develops_from UBERON:0004876 {source="Wikipedia"} ! urogenital fold +relationship: develops_from UBERON:0005876 {source="EHDAA2"} ! undifferentiated genital tubercle + +[Term] +id: UBERON:0000990 +name: reproductive system +def: "Anatomical system that has as its parts the organs concerned with reproduction." [http://en.wikipedia.org/wiki/Reproductive_system] +subset: efo_slim +subset: functional_classification +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "animal reproductive system" RELATED [BTO:0000081] +synonym: "genital system" RELATED [] +synonym: "genital tract" RELATED [] +synonym: "genitalia" RELATED PLURAL [] +synonym: "Geschlechtsorgan" RELATED [BTO:0000081] +synonym: "organa genitalia" RELATED [BTO:0000081] +synonym: "reproductive tissue" RELATED [BTO:0000081] +synonym: "reproductive tract" RELATED [] +synonym: "systemata genitalia" RELATED LATIN [http://en.wikipedia.org/wiki/Reproductive_system] +xref: AAO:0010258 +xref: BILA:0000103 +xref: BTO:0000081 +xref: CALOHA:TS-1318 +xref: EFO:0000809 +xref: EHDAA2:0001603 +xref: EHDAA:5923 +xref: EMAPA:17381 +xref: EV:0100100 +xref: FBbt:00004857 +xref: FMA:7160 +xref: GAID:363 +xref: HAO:0000374 +xref: HAO:0000895 +xref: http://linkedlifedata.com/resource/umls/id/C1261210 +xref: http://www.snomedbrowser.com/Codes/Details/278875001 +xref: MA:0000326 +xref: MIAA:0000305 +xref: NCIT:C12841 +xref: OpenCyc:Mx4rvVja4ZwpEbGdrcN5Y29ycA +xref: Reproductive:system +xref: TAO:0000632 +xref: UMLS:C1261210 {source="ncithesaurus:Reproductive_System"} +xref: VHOG:0000182 +xref: WBbt:0005747 +xref: XAO:0000142 +xref: ZFA:0000632 +is_a: UBERON:0000467 ! anatomical system +disjoint_from: UBERON:0001004 ! respiratory system +disjoint_from: UBERON:0001007 ! digestive system +disjoint_from: UBERON:0001008 ! renal system +disjoint_from: UBERON:0001009 ! circulatory system +disjoint_from: UBERON:0001016 ! nervous system +disjoint_from: UBERON:0001033 ! gustatory system +disjoint_from: UBERON:0001434 ! skeletal system +disjoint_from: UBERON:0002204 ! musculoskeletal system +disjoint_from: UBERON:0002294 ! biliary system +disjoint_from: UBERON:0002330 ! exocrine system +disjoint_from: UBERON:0002390 ! hematopoietic system +disjoint_from: UBERON:0002405 ! immune system +disjoint_from: UBERON:0002416 ! integumental system +disjoint_from: UBERON:0002423 ! hepatobiliary system +disjoint_from: UBERON:0004456 ! entire sense organ system +relationship: existence_ends_during UBERON:0000066 ! fully formed stage +relationship: fma_set_term FMA:75572 +relationship: has_part UBERON:0000991 ! gonad + +[Term] +id: UBERON:0000991 +name: gonad +def: "Reproductive organ that produces and releases eggs (ovary) or sperm (testis)." [http://en.wikipedia.org/wiki/Gonad, ISBN:0140512888, ZFA:0000413, ZFIN:curator] +subset: major_organ +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "gonada" EXACT [] +synonym: "gonads" RELATED PLURAL [ZFA:0000413] +xref: AAO:0000213 +xref: BILA:0000123 +xref: BSA:0000079 +xref: BTO:0000534 +xref: EMAPA:17383 +xref: FBbt:00004858 +xref: FMA:18250 +xref: GAID:368 +xref: HAO:0000379 +xref: http://en.wikipedia.org/wiki/Gonad +xref: http://linkedlifedata.com/resource/umls/id/C0018067 +xref: http://www.snomedbrowser.com/Codes/Details/304623008 +xref: MA:0002420 +xref: MESH:D006066 +xref: NCIT:C12725 +xref: OpenCyc:Mx4rwQvdiZwpEbGdrcN5Y29ycA +xref: TAO:0000413 +xref: UMLS:C0018067 {source="ncithesaurus:Gonad"} +xref: VHOG:0000397 +xref: WBbt:0005175 +xref: XAO:0003146 +xref: ZFA:0000413 +is_a: UBERON:0003133 ! reproductive organ +relationship: develops_from UBERON:0005564 ! gonad primordium + +[Term] +id: UBERON:0000992 +name: ovary +def: "the gonad of a female organism which contains germ cells" [http://en.wikipedia.org/wiki/Ovary, ISBN:0-683-40008-8, MP:0001126] +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "animal ovary" EXACT [EFO:0000973] +synonym: "female gonad" EXACT [] +synonym: "female organism genitalia gonad" EXACT [OBOL:automatic] +synonym: "female organism genitalia gonada" EXACT [OBOL:automatic] +synonym: "female organism reproductive system gonad" EXACT [OBOL:automatic] +synonym: "female organism reproductive system gonada" EXACT [OBOL:automatic] +synonym: "female reproductive system gonad" EXACT [OBOL:automatic] +synonym: "female reproductive system gonada" EXACT [OBOL:automatic] +synonym: "genitalia of female organism gonad" EXACT [OBOL:automatic] +synonym: "genitalia of female organism gonada" EXACT [OBOL:automatic] +synonym: "gonad of female organism genitalia" EXACT [OBOL:automatic] +synonym: "gonad of female organism reproductive system" EXACT [OBOL:automatic] +synonym: "gonad of female reproductive system" EXACT [OBOL:automatic] +synonym: "gonad of genitalia of female organism" EXACT [OBOL:automatic] +synonym: "gonad of reproductive system of female organism" EXACT [OBOL:automatic] +synonym: "gonada of female organism genitalia" EXACT [OBOL:automatic] +synonym: "gonada of female organism reproductive system" EXACT [OBOL:automatic] +synonym: "gonada of female reproductive system" EXACT [OBOL:automatic] +synonym: "gonada of genitalia of female organism" EXACT [OBOL:automatic] +synonym: "gonada of reproductive system of female organism" EXACT [OBOL:automatic] +synonym: "ovaries" RELATED PLURAL [] +synonym: "ovarium" RELATED LATIN [http://en.wikipedia.org/wiki/Ovary] +synonym: "ovum-producing ovary" EXACT SENSU [GO:0061039] +synonym: "reproductive system of female organism gonad" EXACT [OBOL:automatic] +synonym: "reproductive system of female organism gonada" EXACT [OBOL:automatic] +xref: AAO:0000371 +xref: BILA:0000125 +xref: BSA:0000080 +xref: BTO:0000975 +xref: CALOHA:TS-0730 +xref: EFO:0000973 +xref: EHDAA2:0001360 +xref: EHDAA:8124 +xref: EMAPA:17962 +xref: EV:0100111 +xref: FBbt:00004865 +xref: FMA:7209 +xref: GAID:367 +xref: http://en.wikipedia.org/wiki/Ovary +xref: http://linkedlifedata.com/resource/umls/id/C0029939 +xref: http://www.snomedbrowser.com/Codes/Details/181464007 +xref: MA:0000384 +xref: MESH:D010053 +xref: MIAA:0000125 +xref: NCIT:C12404 +xref: OpenCyc:Mx4rvVi9QJwpEbGdrcN5Y29ycA +xref: TAO:0000403 +xref: UMLS:C0029939 {source="ncithesaurus:Ovary"} +xref: VHOG:0000251 +xref: XAO:0000258 +xref: ZFA:0000403 +is_a: UBERON:0000991 ! gonad +is_a: UBERON:0003134 ! female reproductive organ +intersection_of: UBERON:0000991 ! gonad +intersection_of: part_of UBERON:0000474 ! female reproductive system +disjoint_from: UBERON:0009117 ! indifferent gonad +relationship: develops_from UBERON:0009117 ! indifferent gonad + +[Term] +id: UBERON:0000993 +name: oviduct +def: "A tube or collection of tubes in an animal from the ovaries to the outside of the body." [http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "female reproductive tracts" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "ovarian duct" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "ovarian tube" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "oviducts" RELATED PLURAL [ZFA:0000560] +synonym: "tuba uterina" RELATED [BTO:0000980] +synonym: "tuba uterinae" RELATED [BTO:0000980] +synonym: "tubular parts of female reproductive system" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "uterine tube" EXACT [] +xref: AAO:0010533 +xref: BSA:0000083 +xref: BTO:0000980 +xref: EFO:0000974 +xref: EMAPA:18984 +xref: GAID:366 +xref: http://en.wikipedia.org/wiki/Oviduct +xref: http://linkedlifedata.com/resource/umls/id/C0029954 +xref: MAT:0000126 +xref: MESH:D010057 +xref: MIAA:0000126 +xref: NCIT:C77957 +xref: TAO:0000560 +xref: UMLS:C0029954 {source="ncithesaurus:Oviduct"} +xref: VHOG:0001136 +xref: XAO:0003052 +xref: ZFA:0000560 +is_a: UBERON:0000025 ! tube +is_a: UBERON:0005156 ! reproductive structure +relationship: connects UBERON:0000992 ! ovary +relationship: connects UBERON:0013514 ! space surrounding organism +relationship: part_of UBERON:0000474 ! female reproductive system + +[Term] +id: UBERON:0000994 +name: spermathecum +def: "An organ of the female reproductive tract that functions to receive and store sperm from the male, and can sometimes be the site of fertilization when the oocytes are ready." [http://en.wikipedia.org/wiki/Spermatheca, https://github.com/obophenotype/uberon/issues/1405] +subset: dubious_grouping +subset: efo_slim +subset: uberon_slim +synonym: "receptaculum seminis" RELATED [BTO:0001273] +synonym: "seminal receptacle" RELATED [] +synonym: "spermatheca" RELATED PLURAL [] +synonym: "spermathecae" RELATED PLURAL [] +xref: BTO:0001273 +xref: EFO:0000977 +xref: FBbt:00004921 +xref: HAO:0000945 +xref: http://en.wikipedia.org/wiki/Spermatheca +xref: MAT:0000168 +xref: MIAA:0000168 +xref: TGMA:0000560 +xref: WBbt:0005319 +is_a: UBERON:0000062 ! organ +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0000991 ! gonad + +[Term] +id: UBERON:0000995 +name: uterus +def: "the female muscular organ of gestation in which the developing embryo or fetus is nourished until birth" [MGI:csmith, MP:0001120] +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +xref: BTO:0001424 +xref: CALOHA:TS-1102 +xref: EFO:0000975 +xref: EMAPA:29915 +xref: EV:0100113 +xref: FMA:17558 +xref: GAID:172 +xref: galen:Uterus +xref: http://en.wikipedia.org/wiki/Uterus +xref: http://linkedlifedata.com/resource/umls/id/C0042149 +xref: http://www.snomedbrowser.com/Codes/Details/181452004 +xref: MA:0000389 +xref: MAT:0000127 +xref: MESH:D014599 +xref: MIAA:0000127 +xref: NCIT:C12405 +xref: OpenCyc:Mx4rvViojJwpEbGdrcN5Y29ycA +xref: UMLS:C0042149 {source="ncithesaurus:Uterus"} +xref: VHOG:0001137 +is_a: UBERON:0013515 {source="cjm"} ! subdivision of oviduct +relationship: develops_from UBERON:0005795 ! embryonic uterus +relationship: immediate_transformation_of UBERON:0005795 ! embryonic uterus +relationship: part_of UBERON:0004175 ! internal genitalia + +[Term] +id: UBERON:0000996 +name: vagina +def: "A fibromuscular tubular tract leading from the uterus to the exterior of the body in female placental mammals and marsupials, or to the cloaca in female birds, monotremes, and some reptiles[WP]." [http://en.wikipedia.org/wiki/Vagina, http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "distal oviductal region" RELATED [] +synonym: "distal portion of oviduct" RELATED [] +synonym: "vaginae" RELATED PLURAL [] +xref: BTO:0000243 +xref: CALOHA:TS-1103 +xref: EFO:0000976 +xref: EMAPA:18986 +xref: EV:0100117 +xref: FMA:19949 +xref: GAID:381 +xref: galen:Vagina +xref: http://en.wikipedia.org/wiki/Vagina +xref: http://linkedlifedata.com/resource/umls/id/C0042232 +xref: http://www.snomedbrowser.com/Codes/Details/181441005 +xref: MA:0000394 +xref: MAT:0000128 +xref: MESH:D014621 +xref: MIAA:0000128 +xref: NCIT:C12407 +xref: OpenCyc:Mx4rvVj1B5wpEbGdrcN5Y29ycA +xref: UMLS:C0042232 {source="ncithesaurus:Vagina"} +xref: VHOG:0001138 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0013515 {source="cjm"} ! subdivision of oviduct +relationship: contributes_to_morphology_of UBERON:0003975 ! internal female genitalia +relationship: develops_from UBERON:0000164 {source="Wikipedia"} ! primitive urogenital sinus +relationship: part_of UBERON:0003975 {source="FMA"} ! internal female genitalia + +[Term] +id: UBERON:0000997 +name: mammalian vulva +def: "external genital organs of the female mammal[WP]." [http://en.wikipedia.org/wiki/Vulva] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "female pudendum" EXACT [FMA:20462] +synonym: "female pudendum" EXACT [BTO:0003101] +synonym: "mammalian vulva" EXACT [] +synonym: "puboperineal region" EXACT [FMA:20462] +synonym: "pudendum" RELATED [BTO:0003101] +synonym: "pudendum femininum" EXACT LATIN [FMA:20462, FMA:TA] +synonym: "pudendum femininum" RELATED LATIN [http://en.wikipedia.org/wiki/Vulva] +synonym: "pudendum muliebre" RELATED [BTO:0003101] +synonym: "skin of female pudendum" EXACT [] +synonym: "skin of vulva" EXACT [] +synonym: "vulva" EXACT [MA:0000395] +xref: BTO:0003101 +xref: CALOHA:TS-1168 +xref: EFO:0000978 +xref: EMAPA:36631 +xref: EV:0100118 +xref: FMA:20462 +xref: GAID:383 +xref: galen:Vulva +xref: http://en.wikipedia.org/wiki/Vulva +xref: http://linkedlifedata.com/resource/umls/id/C0042993 +xref: http://www.snomedbrowser.com/Codes/Details/265796001 +xref: MA:0000395 +xref: MAT:0000169 +xref: MESH:D014844 +xref: MIAA:0000169 +xref: NCIT:C12408 +xref: OpenCyc:Mx4rvgAWeJwpEbGdrcN5Y29ycA +xref: UMLS:C0042993 {source="ncithesaurus:Vulva"} +xref: VHOG:0001458 +is_a: UBERON:0000062 ! organ +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0005056 ! external female genitalia + +[Term] +id: UBERON:0000998 +name: seminal vesicle +def: "Either of a pair of glandular pouches that lie one on either side of the male reproductive tract posterolateral to the urinary bladder and in the human male secrete a sugar- and protein-containing fluid into the ejaculatory duct." [BTO:0001234, http://en.wikipedia.org/wiki/Seminal_vesicle] +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "glandula seminalis" RELATED [BTO:0001234] +synonym: "glandula vesiculosa" RELATED [BTO:0001234] +synonym: "gonecyst" RELATED [] +synonym: "seminal gland" BROAD [] +synonym: "vas efferens" RELATED [] +synonym: "vesicula seminalis" RELATED [http://en.wikipedia.org/wiki/Seminal_vesicle] +synonym: "vesicula seminalis" RELATED [BTO:0001234] +synonym: "vesiculae seminales" RELATED LATIN [http://en.wikipedia.org/wiki/Seminal_vesicle] +synonym: "vesiculae seminales" RELATED [http://en.wikipedia.org/wiki/Seminal_vesicle] +synonym: "vesicular gland" RELATED [http://en.wikipedia.org/wiki/Seminal_vesicle] +synonym: "vesicular glands" RELATED [http://en.wikipedia.org/wiki/Seminal_vesicle] +synonym: "vesicular seminalis" RELATED [http://en.wikipedia.org/wiki/Seminal_vesicle] +synonym: "vesiculæ seminales" RELATED [http://en.wikipedia.org/wiki/Seminal_vesicle] +xref: AAO:0010788 +xref: BTO:0001234 +xref: CALOHA:TS-0919 +xref: EFO:0000986 +xref: EMAPA:19180 +xref: EV:0100106 +xref: FMA:19386 +xref: GAID:394 +xref: http://linkedlifedata.com/resource/umls/id/C0036628 +xref: http://www.snomedbrowser.com/Codes/Details/181434004 +xref: MA:0000410 +xref: MAT:0000171 +xref: MESH:D012669 +xref: MIAA:0000171 +xref: NCIT:C12787 +xref: OpenCyc:Mx4rwTtRpJwpEbGdrcN5Y29ycA +xref: Seminal:vesicle +xref: UMLS:C0036628 {source="ncithesaurus:Seminal_Vesicle"} +xref: VHOG:0001379 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0006868 ! seminal fluid secreting gland +relationship: contributes_to_morphology_of UBERON:0004054 ! internal male genitalia +relationship: develops_from UBERON:0000080 ! mesonephros +relationship: part_of UBERON:0000473 ! testis +relationship: produces UBERON:0010143 ! seminal vesicle fluid + +[Term] +id: UBERON:0000999 +name: ejaculatory duct +def: "The Ejaculatory ducts (ductus ejaculatorii) are paired structures in male anatomy, about 2 cm in length. Each ejaculatory duct is formed by the union of the vas deferens with the duct of the seminal vesicle. They pass through the prostate, and empty into the urethra at the Colliculus seminalis. During ejaculation, semen passes through the ducts and exits the body via the penis[WP,unvetted]." [http://en.wikipedia.org/wiki/Ejaculatory_duct] +subset: efo_slim +subset: uberon_slim +synonym: "ductus ejaculatorii" EXACT PLURAL [BTO:0001580] +synonym: "ductus ejaculatorii" RELATED LATIN [http://en.wikipedia.org/wiki/Ejaculatory_duct] +synonym: "ductus ejaculatorius" EXACT [BTO:0001580] +xref: BTO:0001580 +xref: CALOHA:TS-0211 +xref: EFO:0000985 +xref: Ejaculatory:duct +xref: EMAPA:19088 +xref: FMA:19325 +xref: GAID:388 +xref: http://linkedlifedata.com/resource/umls/id/C0013747 +xref: http://www.snomedbrowser.com/Codes/Details/279665005 +xref: MA:0003247 +xref: MAT:0000170 +xref: MESH:D004543 +xref: MIAA:0000170 +xref: NCIT:C32493 +xref: OpenCyc:Mx4rwOt7MJwpEbGdrcN5Y29ycA +xref: UMLS:C0013747 {source="ncithesaurus:Ejaculatory_Duct"} +is_a: UBERON:0000025 ! tube +is_a: UBERON:0005904 ! duct of male reproductive system +is_a: UBERON:0015212 ! lateral structure +relationship: channel_for UBERON:0001968 ! semen +relationship: channel_for UBERON:0010143 ! seminal vesicle fluid +relationship: channels_from UBERON:0000998 ! seminal vesicle +relationship: channels_from UBERON:0001000 ! vas deferens +relationship: channels_into UBERON:0000057 ! urethra +relationship: in_lateral_side_of UBERON:0000079 ! male reproductive system + +[Term] +id: UBERON:0001000 +name: vas deferens +def: "A secretory duct that transports sperm from the testis. In mammals this is a continuation of the epididymis and ends in the prostatic urethra where it terminates to form ejaculatory duct" [http://en.wikipedia.org/wiki/Vas_deferens, http://orcid.org/0000-0002-6601-2165, ISBN:0-683-40008-8, MGI:pvb, MP:0002769] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "deferent duct" EXACT [] +synonym: "ductus deferens" EXACT [http://en.wikipedia.org/wiki/Vas_deferens] +synonym: "sperm duct" RELATED [] +synonym: "vas deferen" EXACT [] +synonym: "vasa deferentia" RELATED [] +xref: BTO:0001427 +xref: CALOHA:TS-1105 +xref: EFO:0000981 +xref: EMAPA:18681 +xref: EV:0100105 +xref: FMA:19234 +xref: GAID:404 +xref: galen:VasDeferens +xref: http://linkedlifedata.com/resource/umls/id/C0042360 +xref: http://www.snomedbrowser.com/Codes/Details/245467009 +xref: MA:0000413 +xref: MESH:D014649 +xref: MIAA:0000129 +xref: NCIT:C12813 +xref: OpenCyc:Mx4rvjv7bpwpEbGdrcN5Y29ycA +xref: UMLS:C0042360 {source="ncithesaurus:Vas_Deferens"} +xref: Vas:deferens +xref: VHOG:0001135 +is_a: UBERON:0000025 ! tube +is_a: UBERON:0005904 ! duct of male reproductive system +relationship: channel_for UBERON:0001968 ! semen +relationship: channels_from UBERON:0001301 ! epididymis +relationship: channels_into UBERON:0000999 ! ejaculatory duct +relationship: contributes_to_morphology_of UBERON:0004054 ! internal male genitalia +relationship: part_of UBERON:0005352 {source="FMA"} ! spermatic cord +relationship: part_of UBERON:0006947 ! male genital duct + +[Term] +id: UBERON:0001001 +name: chitin-based cuticle +alt_id: UBERON:FBbt_00004970 +def: "A cuticular covering that is composed primarily of chitin. The main structural component of arthropod cuticle is a polysaccharide, chitin, composed of N-acetylglucosamine units, together with proteins and lipids[WP]." [http://en.wikipedia.org/wiki/Arthropod_exoskeleton, http://en.wikipedia.org/wiki/Cuticle#Invertebrate_zoology, https://orcid.org/0000-0002-6601-2165, https://sourceforge.net/tracker/index.php?func=detail&aid=3348965&group_id=36855&atid=440764] +subset: efo_slim +subset: uberon_slim +synonym: "arthropod cuticle" RELATED [] +synonym: "arthropod exoskeleton" RELATED [http://en.wikipedia.org/wiki/Arthropod_exoskeleton] +synonym: "cuticle" NARROW [FBbt:00004970] +synonym: "exoskeleton" BROAD [] +synonym: "insect cuticle" RELATED [] +xref: Arthropod:exoskeleton +xref: EFO:0000944 +xref: FBbt:00004970 +xref: HAO:0000240 +xref: MAT:0000150 +xref: MIAA:0000150 +xref: OpenCyc:Mx4rvVkBTJwpEbGdrcN5Y29ycA +is_a: UBERON:0001002 ! cuticle +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0007491 ! chitin-based acellular structure +relationship: develops_from UBERON:0007376 ! outer epithelium +relationship: part_of UBERON:0002416 ! integumental system + +[Term] +id: UBERON:0001002 +name: cuticle +def: "tough but flexible, non-mineral outer coverings of an organism, or parts of an organism, that provide protection. Cuticles are non-homologous, differing in their origin, structure and chemical composition[WP]." [http://en.wikipedia.org/wiki/Cuticle, http://sourceforge.net/tracker/?func=detail&aid=3348965&group_id=36855&atid=440764] +subset: grouping_class +subset: non_informative +subset: uberon_slim +synonym: "cuticula" RELATED [BTO:0001600] +synonym: "cuticular exoskeleton" RELATED [] +xref: BTO:0001600 +xref: http://en.wikipedia.org/wiki/Cuticle +is_a: UBERON:0000476 ! acellular anatomical structure +disjoint_from: UBERON:0004882 ! eponychium + +[Term] +id: UBERON:0001003 +name: skin epidermis +def: "The outer epithelial layer of the skin that is superficial to the dermis." [http://orcid.org/0000-0002-6601-2165, ISBN:0073040584] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "epidermis" BROAD [] +synonym: "skin" BROAD [] +synonym: "vertebrate epidermis" EXACT [] +xref: AAO:0000143 +xref: BTO:0000404 +xref: CALOHA:TS-0283 +xref: EFO:0000954 +xref: EMAPA:17528 +xref: Epidermis:(skin) +xref: EV:0100153 +xref: FMA:70596 +xref: GAID:932 +xref: http://linkedlifedata.com/resource/umls/id/C0014520 +xref: http://www.snomedbrowser.com/Codes/Details/361694003 +xref: MA:0000153 +xref: MAT:0000154 +xref: MESH:D004817 +xref: MIAA:0000154 +xref: NCIT:C12708 +xref: TAO:0000105 +xref: UMLS:C0014520 {source="ncithesaurus:Epidermis"} +xref: VHOG:0000077 +xref: XAO:0000028 +xref: ZFA:0000105 +is_a: UBERON:0007376 ! outer epithelium +is_a: UBERON:3000961 ! external integument structure +intersection_of: UBERON:0007376 ! outer epithelium +intersection_of: part_of UBERON:0002097 ! skin of body +relationship: adjacent_to UBERON:0002067 ! dermis +relationship: developmentally_replaces UBERON:0003055 ! periderm +relationship: part_of UBERON:0002097 ! skin of body + +[Term] +id: UBERON:0001004 +name: respiratory system +def: "Functional system which consists of structures involved in respiration." [http://en.wikipedia.org/wiki/Respiratory_system, http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: functional_classification +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "apparatus respiratorius" EXACT [] +synonym: "apparatus respiratorius" RELATED [BTO:0000203] +synonym: "Atmungssystem" RELATED [BTO:0000203] +synonym: "respiratory system" EXACT [] +synonym: "systema respiratorium" RELATED LATIN [http://en.wikipedia.org/wiki/Respiratory_system] +xref: AAO:0000541 +xref: BTO:0000203 +xref: CALOHA:TS-1319 +xref: EFO:0000804 +xref: EHDAA2:0001604 +xref: EHDAA:2203 +xref: EMAPA:16727 +xref: EV:0100036 +xref: FMA:7158 +xref: GAID:78 +xref: http://linkedlifedata.com/resource/umls/id/C0035237 +xref: http://www.snomedbrowser.com/Codes/Details/278197002 +xref: MA:0000327 +xref: MAT:0000030 +xref: MESH:D012137 +xref: MIAA:0000030 +xref: NCIT:C12779 +xref: OpenCyc:Mx4rvVjzFJwpEbGdrcN5Y29ycA +xref: Respiratory:system +xref: TAO:0000272 +xref: UMLS:C0035237 {source="ncithesaurus:Respiratory_System"} +xref: VHOG:0000202 +xref: XAO:0000117 +xref: ZFA:0000272 +is_a: UBERON:0000467 ! anatomical system +disjoint_from: UBERON:0001007 ! digestive system +disjoint_from: UBERON:0001008 ! renal system +disjoint_from: UBERON:0001009 ! circulatory system +disjoint_from: UBERON:0001016 ! nervous system +disjoint_from: UBERON:0001033 ! gustatory system +disjoint_from: UBERON:0001434 ! skeletal system +disjoint_from: UBERON:0002204 ! musculoskeletal system +disjoint_from: UBERON:0002294 ! biliary system +disjoint_from: UBERON:0002330 ! exocrine system +disjoint_from: UBERON:0002390 ! hematopoietic system +disjoint_from: UBERON:0002405 ! immune system +disjoint_from: UBERON:0002416 ! integumental system +disjoint_from: UBERON:0002423 ! hepatobiliary system +disjoint_from: UBERON:0004456 ! entire sense organ system +relationship: existence_ends_during UBERON:0000066 ! fully formed stage + +[Term] +id: UBERON:0001005 +name: respiratory airway +def: "An airway through which respiratory air passes in organisms." [http://en.wikipedia.org/wiki/Trachea] +subset: grouping_class +subset: uberon_slim +synonym: "airway" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "airways" BROAD PLURAL [http://orcid.org/0000-0002-6601-2165] +xref: FMA:265130 +xref: http://en.wikipedia.org/wiki/Trachea +xref: http://www.snomedbrowser.com/Codes/Details/361380005 +is_a: UBERON:0003103 ! compound organ +is_a: UBERON:0004111 ! anatomical conduit +relationship: channel_for UBERON:0034874 ! air in respiratory system +relationship: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0001006 +name: obsolete spiracle +def: "OBSOLETE: The mostly slit-like opening on the body surface through which air is taken into the respiratory system." [http://en.wikipedia.org/wiki/Spiracle, ISBN:3110148986] +comment: This class was obsoleted as it grouped together disparate classes. For the fish structure, see UBERON:0010019. The arthropod structure will presumably be added to the arthropod anatomy +subset: efo_slim +synonym: "open tracheal system spiracle" NARROW [GO:0035277] +synonym: "spiracle of open tracheal system" NARROW [GO:0035277] +synonym: "spiracular gland" RELATED [] +xref: EFO:0000936 +xref: http://en.wikipedia.org/wiki/Spiracle +xref: MAT:0000208 +xref: MIAA:0000208 +is_obsolete: true +consider: FBbt:00005054 +consider: HAO:0000950 +consider: TGMA:0000578 +consider: UBERON:0010019 + +[Term] +id: UBERON:0001007 +name: digestive system +def: "Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes." [FB:gg, http://en.wikipedia.org/wiki/Digestive_system, NLM:alimentary+system] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "alimentary system" RELATED [] +synonym: "alimentary tract" RELATED [] +synonym: "gastrointestinal system" RELATED [] +synonym: "gut" RELATED [] +xref: AAO:0000129 +xref: BILA:0000082 +xref: BTO:0000058 +xref: CALOHA:TS-1293 +xref: Digestive:system +xref: EFO:0000793 +xref: EV:0100056 +xref: FBbt:00005055 +xref: FMA:7152 +xref: GAID:278 +xref: galen:DigestiveSystem +xref: http://www.snomedbrowser.com/Codes/Details/278859004 +xref: MA:0002431 +xref: MAT:0000018 +xref: MESH:D004064 +xref: MIAA:0000018 +xref: ncithesaurus:Digestive_System +xref: TADS:0000170 +xref: TAO:0000339 +xref: WBbt:0005748 +xref: XAO:0000125 +xref: ZFA:0000339 +is_a: UBERON:0000467 ! anatomical system +disjoint_from: UBERON:0001008 ! renal system +disjoint_from: UBERON:0001009 ! circulatory system +disjoint_from: UBERON:0001016 ! nervous system +disjoint_from: UBERON:0001033 ! gustatory system +disjoint_from: UBERON:0001434 ! skeletal system +disjoint_from: UBERON:0002204 ! musculoskeletal system +disjoint_from: UBERON:0002294 ! biliary system +disjoint_from: UBERON:0002330 ! exocrine system +disjoint_from: UBERON:0002390 ! hematopoietic system +disjoint_from: UBERON:0002405 ! immune system +disjoint_from: UBERON:0002416 ! integumental system +disjoint_from: UBERON:0002423 ! hepatobiliary system +disjoint_from: UBERON:0004456 ! entire sense organ system +relationship: existence_ends_during UBERON:0000066 ! fully formed stage + +[Term] +id: UBERON:0001008 +name: renal system +def: "The renal system in an anatomical system that maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products.." [GO:0072001, https://doi.org/10.1371/journal.pone.0099864] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "excretory system" EXACT [] +synonym: "renal or urinary system" RELATED [EHDAA:5901] +synonym: "renal system" EXACT [GO:0001977] +synonym: "renal/urinary system" RELATED [] +synonym: "systema urinaria" EXACT [FMA:7159] +synonym: "systema urinarium" EXACT [BTO:0003092] +synonym: "urinary system" EXACT [] +synonym: "urinary tract" EXACT [] +xref: AAO:0010257 +xref: BILA:0000015 +xref: BTO:0001244 +xref: BTO:0003092 +xref: CALOHA:TS-1323 +xref: EFO:0000803 +xref: EHDAA2:0001601 +xref: EHDAA:5901 +xref: EMAPA:17366 +xref: EV:0100095 +xref: Excretory:system +xref: FBbt:00005056 +xref: FMA:7159 +xref: GAID:391 +xref: galen:UrinaryTract +xref: http://linkedlifedata.com/resource/umls/id/C1508753 +xref: http://www.snomedbrowser.com/Codes/Details/362204003 +xref: MA:0000325 +xref: MAT:0000027 +xref: MESH:D014551 +xref: MIAA:0000027 +xref: NCIT:C12413 +xref: TADS:0000162 +xref: TAO:0000163 +xref: UMLS:C1508753 {source="ncithesaurus:Urinary_System"} +xref: VHOG:0000723 +xref: WBbt:0005736 +xref: XAO:0000143 +xref: ZFA:0000163 +is_a: UBERON:0000467 ! anatomical system +disjoint_from: UBERON:0001009 ! circulatory system +disjoint_from: UBERON:0001016 ! nervous system +disjoint_from: UBERON:0001033 ! gustatory system +disjoint_from: UBERON:0001434 ! skeletal system +disjoint_from: UBERON:0002204 ! musculoskeletal system +disjoint_from: UBERON:0002294 ! biliary system +disjoint_from: UBERON:0002330 ! exocrine system +disjoint_from: UBERON:0002390 ! hematopoietic system +disjoint_from: UBERON:0002405 ! immune system +disjoint_from: UBERON:0002416 ! integumental system +disjoint_from: UBERON:0002423 ! hepatobiliary system +disjoint_from: UBERON:0004456 ! entire sense organ system +relationship: existence_ends_during UBERON:0000066 ! fully formed stage + +[Term] +id: UBERON:0001009 +name: circulatory system +def: "organ system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells, etc. to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis[WP]." [http://en.wikipedia.org/wiki/Circulatory_system] +subset: uberon_slim +synonym: "systema cardiovasculare" RELATED LATIN [http://en.wikipedia.org/wiki/Circulatory_system] +xref: AAO:0000959 +xref: CALOHA:TS-2103 +xref: Circulatory:system +xref: FBbt:00005057 +xref: OpenCyc:Mx4rvVjzG5wpEbGdrcN5Y29ycA +xref: VHOG:0001248 +is_a: UBERON:0000467 ! anatomical system +disjoint_from: UBERON:0001016 ! nervous system +disjoint_from: UBERON:0001033 ! gustatory system +disjoint_from: UBERON:0001434 ! skeletal system +disjoint_from: UBERON:0002204 ! musculoskeletal system +disjoint_from: UBERON:0002294 ! biliary system +disjoint_from: UBERON:0002330 ! exocrine system +disjoint_from: UBERON:0002390 ! hematopoietic system +disjoint_from: UBERON:0002405 ! immune system +disjoint_from: UBERON:0002416 ! integumental system +disjoint_from: UBERON:0002423 ! hepatobiliary system +disjoint_from: UBERON:0004456 ! entire sense organ system +relationship: dubious_for_taxon NCBITaxon:6231 {notes="WBbt coelomocyte currently classified as circulating cell"} +relationship: existence_ends_during UBERON:0000066 ! fully formed stage + +[Term] +id: UBERON:0001010 +name: diaphysis of ulna +def: "The body of the ulna at its upper part is prismatic in form, and curved so as to be convex behind and lateralward; its central part is straight; its lower part is rounded, smooth, and bent a little lateralward. It tapers gradually from above downward, and has three borders and three surfaces." [http://en.wikipedia.org/wiki/Body_of_ulna] +synonym: "body of ulna" EXACT [FMA:33760] +synonym: "corpus ulnae" EXACT [FMA:33760] +synonym: "shaft of ulna" EXACT [FMA:33760] +synonym: "shaft of ulna" RELATED [http://en.wikipedia.org/wiki/Body_of_ulna] +synonym: "supinator crest" RELATED [http://en.wikipedia.org/wiki/Body_of_ulna] +synonym: "ulnar diaphysis" EXACT [FMA:33760] +xref: FMA:33760 +xref: http://en.wikipedia.org/wiki/Body_of_ulna +xref: http://www.snomedbrowser.com/Codes/Details/302520004 +xref: NCIT:C120676 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004769 ! diaphysis +intersection_of: UBERON:0004769 ! diaphysis +intersection_of: part_of UBERON:0001424 ! ulna +relationship: part_of UBERON:0001424 ! ulna + +[Term] +id: UBERON:0001011 +name: hemolymph +def: "Blood analogue used by all arthropods and most mollusks that have an open circulatory system. In these animals there is no distinction between blood and interstitial fluid. The liquid fills all of the interior (the hemocoel) of the body and surrounds all cells." [http://en.wikipedia.org/wiki/Hemolymph] +subset: uberon_slim +synonym: "haemolymph" RELATED [] +xref: BTO:0000572 +xref: FBbt:00005061 +xref: GAID:1220 +xref: http://en.wikipedia.org/wiki/Hemolymph +xref: MAT:0000054 +xref: MESH:D006458 +xref: MIAA:0000054 +xref: TGMA:0000000 +is_a: UBERON:0000463 ! organism substance +relationship: part_of UBERON:0001009 ! circulatory system + +[Term] +id: UBERON:0001012 +name: head of radius +def: "The head of the radius has a cylindrical form, and on its upper surface is a shallow cup or fovea for articulation with the capitulum (or capitellum) of the humerus. The circumference of the head is smooth; it is broad medially where it articulates with the radial notch of the ulna, narrow in the rest of its extent, which is embraced by the annular ligament. The deepest point in the fovea is not axi-symmetric with the long axis of the radius, creating a cam effect during pronation and supination[WP]." [http://en.wikipedia.org/wiki/Head_of_radius] +subset: pheno_slim +synonym: "caput radii" RELATED LATIN [http://en.wikipedia.org/wiki/Head_of_radius] +synonym: "radial head" EXACT [FMA:33773] +xref: FMA:33773 +xref: galen:HeadOfRadius +xref: http://en.wikipedia.org/wiki/Head_of_radius +xref: http://www.snomedbrowser.com/Codes/Details/181941003 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +relationship: part_of UBERON:0001490 {source="FMA"} ! elbow joint +relationship: part_of UBERON:0004413 {source="FMA"} ! proximal epiphysis of radius + +[Term] +id: UBERON:0001013 +name: adipose tissue +def: "Portion of connective tissue composed of adipocytes enmeshed in areolar tissue" [http://en.wikipedia.org/wiki/Adipose_tissue, http://orcid.org/0000-0002-6601-2165, MESH:A10.165.114, MGI:cwg, MP:0000003] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "adipose" RELATED [BTO:0001487] +synonym: "bodyfat" RELATED [BTO:0001487] +synonym: "fat" EXACT [MA:0000009] +synonym: "fat tissue" EXACT [] +synonym: "fatty depot" RELATED [] +synonym: "fatty tissue" EXACT [] +xref: AAO:0000001 +xref: Adipose:tissue +xref: AEO:000020 +xref: BTO:0001487 +xref: CALOHA:TS-0013 +xref: EFO:0000790 +xref: EHDAA2:0003120 +xref: EMAPA:35112 +xref: EV:0100381 +xref: FMA:20110 +xref: GAID:920 +xref: galen:FattyTissue +xref: http://linkedlifedata.com/resource/umls/id/C0001527 +xref: http://www.snomedbrowser.com/Codes/Details/55603005 +xref: MA:0000009 +xref: MAT:0000015 +xref: MESH:D000273 +xref: MIAA:0000015 +xref: NCIT:C12472 +xref: OpenCyc:Mx4rvVjc_ZwpEbGdrcN5Y29ycA +xref: TAO:0002134 +xref: UMLS:C0001527 {source="ncithesaurus:Adipose_Tissue"} +xref: VHOG:0001284 +xref: XAO:0003049 +xref: ZFA:0005345 +is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue +disjoint_from: UBERON:0003714 ! neural tissue + +[Term] +id: UBERON:0001014 +name: obsolete fat body +synonym: "fat pad" EXACT [] +is_obsolete: true +consider: UBERON:0003917 + +[Term] +id: UBERON:0001015 +name: musculature +def: "A subdivision of the muscular system corresponding to a subdisivision of an organism." [http://en.wikipedia.org/wiki/Muscular_system, https://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "muscle group" EXACT [] +synonym: "muscle system" RELATED [] +synonym: "muscles" RELATED [] +synonym: "muscles set" EXACT [] +synonym: "musculature" EXACT [] +synonym: "musculature system" RELATED [] +synonym: "musculi" EXACT LATIN [FMA:32558, FMA:TA] +synonym: "set of muscles" EXACT [FMA:32558] +synonym: "set of skeletal muscles" EXACT [MA:0000165] +xref: AAO:0011066 +xref: BTO:0000887 +xref: EFO:0001949 +xref: EMAPA:32715 +xref: EMAPA:35577 +xref: FMA:32558 +xref: http://linkedlifedata.com/resource/umls/id/C0026845 +xref: MA:0000165 +xref: Muscular:system +xref: NCIT:C13056 +xref: OpenCyc:Mx4rvVjmr5wpEbGdrcN5Y29ycA +xref: TAO:0000548 +xref: UMLS:C0026845 {source="ncithesaurus:Muscle"} +xref: VSAO:0005038 +xref: WBbt:0005737 +xref: ZFA:0000548 +is_a: UBERON:0011216 ! organ system subdivision +relationship: composed_primarily_of UBERON:0001630 ! muscle organ +relationship: part_of UBERON:0000383 ! musculature of body + +[Term] +id: UBERON:0001016 +name: nervous system +def: "The nervous system is an organ system containing predominantly neuron and glial cells. In bilaterally symmetrical organism, it is arranged in a network of tree-like structures connected to a central body. The main functions of the nervous system are to regulate and control body functions, and to receive sensory input, process this information, and generate behavior [CUMBO]." [BIRNLEX:844, http://en.wikipedia.org/wiki/Nervous_system, ISBN:0-14-051288-8, ISBN:3110148986, NLM:nervous+system, WB:rynl, ZFIN:curator] +subset: cumbo +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "nerve net" NARROW [http://en.wikipedia.org/wiki/Nerve_net] +synonym: "neurological system" EXACT [GO:0050877] +synonym: "systema nervosum" RELATED LATIN [http://en.wikipedia.org/wiki/Nervous_system] +xref: AAO:0000324 +xref: BILA:0000079 +xref: BIRNLEX:844 +xref: BTO:0001484 +xref: CALOHA:TS-1313 +xref: EFO:0000802 +xref: EHDAA2:0001246 +xref: EHDAA:826 +xref: EMAPA:16469 +xref: EV:0100162 +xref: FBbt:00005093 +xref: FMA:7157 +xref: GAID:466 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3236 +xref: http://linkedlifedata.com/resource/umls/id/C0027763 +xref: http://www.snomedbrowser.com/Codes/Details/278196006 +xref: MA:0000016 +xref: MAT:0000026 +xref: MESH:D009420 +xref: MIAA:0000026 +xref: NCIT:C12755 +xref: Nervous:system +xref: OpenCyc:Mx4rvViT_pwpEbGdrcN5Y29ycA +xref: TAO:0000396 +xref: UMLS:C0027763 {source="ncithesaurus:Nervous_System"} +xref: VHOG:0000402 +xref: WBbt:0005735 +xref: XAO:0000177 +xref: ZFA:0000396 +is_a: UBERON:0000467 ! anatomical system +disjoint_from: UBERON:0001033 ! gustatory system +disjoint_from: UBERON:0001434 ! skeletal system +disjoint_from: UBERON:0002204 ! musculoskeletal system +disjoint_from: UBERON:0002294 ! biliary system +disjoint_from: UBERON:0002330 ! exocrine system +disjoint_from: UBERON:0002390 ! hematopoietic system +disjoint_from: UBERON:0002405 ! immune system +disjoint_from: UBERON:0002416 ! integumental system +disjoint_from: UBERON:0002423 ! hepatobiliary system +disjoint_from: UBERON:0004456 ! entire sense organ system +relationship: develops_from UBERON:0016880 ! future nervous system +relationship: existence_ends_during UBERON:0000066 ! fully formed stage +relationship: immediate_transformation_of UBERON:0016880 {source="Bgee:AN"} ! future nervous system + +[Term] +id: UBERON:0001017 +name: central nervous system +def: "The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the neural tube derivatives: the brain and spinal cord. In invertebrates it includes central ganglia plus nerve cord." [GO:0021551, http://www.frontiersinzoology.com/content/7/1/29, https://sourceforge.net/p/geneontology/ontology-requests/11422/] +subset: cumbo +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "cerebrospinal axis" NARROW [FMA:55675] +synonym: "CNS" EXACT ABBREVIATION [] +synonym: "neuraxis" RELATED [FMA:55675] +synonym: "systema nervosum centrale" EXACT LATIN [FMA:55675, FMA:TA] +xref: AAO:0000090 +xref: BAMS:CNS +xref: BILA:0000080 +xref: BIRNLEX:1099 +xref: BTO:0000227 +xref: CALOHA:TS-0150 +xref: EFO:0000908 +xref: EHDAA2:0000225 +xref: EHDAA:828 +xref: EMAPA:16470 +xref: EMAPA:16754 +xref: EV:0100163 +xref: FBbt:00005094 +xref: FMA:55675 +xref: GAID:570 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=854 +xref: http://en.wikipedia.org/wiki/Central_nervous_system +xref: http://linkedlifedata.com/resource/umls/id/C0927232 +xref: http://www.snomedbrowser.com/Codes/Details/278199004 +xref: MA:0000167 +xref: MAT:0000457 +xref: MESH:D002490 +xref: NCIT:C12438 +xref: OpenCyc:Mx4rvzYt3pwpEbGdrcN5Y29ycA +xref: TAO:0000012 +xref: UMLS:C0927232 {source="ncithesaurus:Central_Nervous_System"} +xref: UMLS:C0927232 {source="BIRNLEX:1099"} +xref: VHOG:0000293 +xref: XAO:0000215 +xref: ZFA:0000012 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0011216 {source="FBbt", source="cjm"} ! organ system subdivision +relationship: develops_from UBERON:0016879 ! future central nervous system +relationship: immediate_transformation_of UBERON:0016879 {source="Bgee:AN"} ! future central nervous system +relationship: part_of UBERON:0001016 ! nervous system + +[Term] +id: UBERON:0001018 +name: axon tract +def: "A group of axons linking two or more neuropils and having a common origin, termination[FBbt]." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, https://github.com/obophenotype/uberon/issues/286] +comment: WP says this is the analog of peripheral nerves in CNS. +subset: cumbo +subset: pheno_slim +synonym: "axonal tract" EXACT [] +synonym: "nerve tract" NARROW [BIRNLEX:1649] +synonym: "nerve tract" RELATED [] +synonym: "neuraxis tract" EXACT [FMA:83847] +synonym: "tract" RELATED [] +synonym: "tract of neuraxis" EXACT [FMA:83847] +xref: BIRNLEX:1649 +xref: EV:0100304 +xref: FBbt:00005100 +xref: FMA:83847 +xref: NLX:147822 +is_a: UBERON:0000122 ! neuron projection bundle +is_a: UBERON:0011215 ! central nervous system cell part cluster + +[Term] +id: UBERON:0001019 +name: nerve fasciculus +def: "A slender neuron projection bundle[FBbt]; A bundle of anatomical fibers, as of muscle or nerve (American Heritage Dictionary 4th ed)." [BIRNLEX:872, FBbt:00005101] +subset: uberon_slim +synonym: "fascicle" BROAD [FBbt:00005101] +synonym: "fasciculus" EXACT LATIN [] +synonym: "nerve bundle" EXACT [FMA:12235] +synonym: "nerve fasciculus" EXACT [FMA:12235] +synonym: "nerve fiber tract" RELATED [BTO:0002191] +synonym: "neural fasciculus" EXACT [FMA:12235] +xref: BIRNLEX:872 +xref: BTO:0002191 +xref: EMAPA:36605 +xref: FBbt:00005101 +xref: FMA:12235 +xref: http://en.wikipedia.org/wiki/Nervous_system_fascicle +xref: http://linkedlifedata.com/resource/umls/id/C1185741 +xref: NCIT:C32586 +xref: TGMA:0000088 +xref: UMLS:C1185741 {source="ncithesaurus:Fascicle"} +is_a: UBERON:0000122 ! neuron projection bundle + +[Term] +id: UBERON:0001020 +name: nervous system commissure +def: "Axon tract that crosses the midline of the central nervous system[NIF, modified]. In the context of Drosophila refers to a broad band of axons connecting equivalent neuropils each side of the brain[FBbt]." [https://github.com/obophenotype/uberon/issues/300, https://github.com/obophenotype/uberon/issues/325, NLXANAT:20090513] +comment: *not* the same as FMA:76741 Commissure +subset: cumbo +subset: uberon_slim +synonym: "commissure" BROAD [] +synonym: "commissure of neuraxis" EXACT [FMA:83906] +synonym: "neuraxis commissure" EXACT [FMA:83906] +synonym: "white matter commissure" NARROW [CUMBO:CUMBO] +xref: FBbt:00005103 +xref: FMA:83906 +xref: http://en.wikipedia.org/wiki/Commissure +xref: http://linkedlifedata.com/resource/umls/id/C1185742 +xref: NCIT:C32349 +xref: NLX:110 +xref: NLXANAT:20090513 +xref: OpenCyc:Mx4rdBrmE6gOEdudWQACs5b6Bw +xref: TADS:0000201 +xref: UMLS:C1185742 {source="ncithesaurus:Commissure"} +is_a: UBERON:0001018 ! axon tract +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +relationship: intersects_midsagittal_plane_of UBERON:0001016 ! nervous system + +[Term] +id: UBERON:0001021 +name: nerve +def: "An enclosed, cable-like bundle of axons in the peripheral nervous system originating in a nerve root in the central nervous system (or a condensed nervous structure) connecting with peripheral structures." [FBbt:00005105, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "nerves" EXACT PLURAL [TAO:0007009] +synonym: "neural subtree" RELATED [FMA:65132] +synonym: "peripheral nerve" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: AAO:0011070 +xref: AEO:0000137 +xref: BAMS:n +xref: BIRNLEX:1615 +xref: BSA:0000098 +xref: BTO:0000925 +xref: BTO:0001027 +xref: CALOHA:TS-0772 +xref: EHDAA2:0003137 +xref: EHDAA:2851 +xref: EHDAA:3776 +xref: EHDAA:4657 +xref: EMAPA:32808 +xref: EMAPA:32815 +xref: EV:0100371 +xref: FBbt:00005105 +xref: FMA:65132 +xref: FMA:65239 +xref: GAID:747 +xref: GAID:758 +xref: galen:Nerve +xref: http://linkedlifedata.com/resource/umls/id/C0027740 +xref: http://linkedlifedata.com/resource/umls/id/C0031119 +xref: http://www.snomedbrowser.com/Codes/Details/244457007 +xref: http://www.snomedbrowser.com/Codes/Details/256864008 +xref: MA:0000217 +xref: MA:0000228 +xref: MESH:D010525 +xref: NCIT:C12466 +xref: NCIT:C12768 +xref: Nervous:system +xref: NLX:147826 +xref: OpenCyc:Mx4rwP3lkpwpEbGdrcN5Y29ycA +xref: TAO:0007009 +xref: UMLS:C0027740 {source="ncithesaurus:Nerve"} +xref: UMLS:C0031119 {source="ncithesaurus:Peripheral_Nerve"} +xref: VHOG:0000901 +xref: XAO:0000204 +xref: XAO:0003047 +xref: ZFA:0007009 +is_a: UBERON:0000122 {source="FBbt"} ! neuron projection bundle +relationship: part_of UBERON:0000010 ! peripheral nervous system + +[Term] +id: UBERON:0001022 +name: obsolete cell body +is_obsolete: true +consider: FBbt:00005107 +consider: FMA:67301 +consider: GO:0043025 +consider: NIF_Subcellular:sao1044911821 + +[Term] +id: UBERON:0001023 +name: obsolete dendrite +def: "The region of a neuron receiving inputs from other neurons, typically a slender neurite, often branched. In insect neurons, this is often not a clear designation and often presynaptic sites co-extend with postsynaptic ones." [http://en.wikipedia.org/wiki/Dendrite, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] +comment: Made obsolete as it was equivalent to GO class +subset: uberon_slim +xref: http://en.wikipedia.org/wiki/Dendrite +is_obsolete: true +consider: FBbt:00005110 +consider: FMA:67314 +consider: GAID:749 +consider: GO:0030425 +consider: MESH:A08.663.256 +consider: NCIT:C32447 +consider: NIF_Subcellular:sao1211023249 +consider: OpenCyc:Mx4rviIdspwpEbGdrcN5Y29ycA +consider: TGMA:0001373 +consider: UMLS:C0011305 + +[Term] +id: UBERON:0001024 +name: obsolete neurite +def: "One of the processes or extensions of a neuron, axon or dendrite or cell body fiber. // Cell appendage of the neuron which includes the axon and the dendrite." [http://en.wikipedia.org/wiki/Neurite, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] +comment: Made obsolete as it was equivalent to GO class +subset: uberon_slim +xref: http://en.wikipedia.org/wiki/Neurite +is_obsolete: true +consider: FBbt:00005113 +consider: FMA:61814 +consider: GAID:751 +consider: GO:0043005 +consider: MESH:A08.663.256.500 +consider: NIF_Subcellular:sao-867568886 + +[Term] +id: UBERON:0001025 +name: obsolete synapse +def: "The structural contact that is the site of transmission between neurons, identified by a presynaptic ribbon and synaptic vesicles as the input element and one or (usually) more postsynaptic elements with various specializations (membrane densities, cisternae, etc.)." [http://en.wikipedia.org/wiki/Synapse, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] +comment: Made obsolete as it was equivalent to GO class +subset: uberon_slim +synonym: "synaptic junction" EXACT [] +xref: http://en.wikipedia.org/wiki/Synapse +is_obsolete: true +consider: FBbt:00005114 +consider: FMA:67408 +consider: GAID:766 +consider: GO:0045202 +consider: MESH:A08.850 +consider: NCIT:C13281 +consider: NIF_Subcellular:sao914572699 +consider: SCTID:362298009 +consider: UMLS:C0039062 + +[Term] +id: UBERON:0001026 +name: obsolete motor nerve +def: "A motor nerve is an efferent nerve that exclusively contains the axons of somatic and branchial motoneurons, which innervate skeletal muscles (that ensure locomotion) and branchial muscles (that motorize the face and neck)[WP]." [http://en.wikipedia.org/wiki/Motor_nerve] +synonym: "efferent nerve" RELATED [] +synonym: "nervus motorius" EXACT [] +xref: Motor:nerve +is_obsolete: true +replaced_by: UBERON:0006798 + +[Term] +id: UBERON:0001027 +name: sensory nerve +def: "A nerve that transmits from sensory receptors on the surface of the body to the central nervous system." [http://en.wikipedia.org/wiki/Sensory_nerve, UBERON:cjm] +subset: pheno_slim +subset: uberon_slim +synonym: "afferent nerve" RELATED [] +synonym: "nervus sensorius" EXACT LATIN [http://en.wikipedia.org/wiki/Sensory_nerve] +xref: AEO:0000201 +xref: EHDAA2:0003200 +xref: FBbt:00005136 +xref: FMA:5868 +xref: OpenCyc:Mx4rv0GdXpwpEbGdrcN5Y29ycA +xref: Sensory:nerve +is_a: UBERON:0001021 ! nerve + +[Term] +id: UBERON:0001028 +name: diaphysis of radius +def: "A diaphysis that is part of a radius bone[Automatically generated definition]." [http://en.wikipedia.org/wiki/Body_of_radius, OBOL:automatic] +subset: pheno_slim +synonym: "body of radius" EXACT [FMA:33782] +synonym: "corpus radii" EXACT [FMA:33782] +synonym: "radial diaphysis" EXACT [FMA:33782] +synonym: "radial shaft" RELATED [http://en.wikipedia.org/wiki/Body_of_radius] +synonym: "shaft of radius" EXACT [FMA:33782] +synonym: "shaft of radius" RELATED [http://en.wikipedia.org/wiki/Body_of_radius] +xref: FMA:33782 +xref: http://en.wikipedia.org/wiki/Body_of_radius +xref: http://www.snomedbrowser.com/Codes/Details/302518002 +xref: NCIT:C120674 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004769 ! diaphysis +intersection_of: UBERON:0004769 ! diaphysis +intersection_of: part_of UBERON:0001423 ! radius bone +relationship: part_of UBERON:0001423 ! radius bone + +[Term] +id: UBERON:0001029 +name: obsolete neuromuscular junction +subset: uberon_slim +synonym: "junctio neuromuscularis" RELATED LATIN [http://en.wikipedia.org/wiki/Neuromuscular_junction] +synonym: "synapsis neuromuscularis" RELATED LATIN [http://en.wikipedia.org/wiki/Neuromuscular_junction] +xref: Neuromuscular:junction +is_obsolete: true +replaced_by: GO:0031594 +consider: FBbt:00005142 +consider: FMA:61803 +consider: GAID:809 +consider: MESH:D009469 +consider: NIF_Subcellular:sao1124888485 + +[Term] +id: UBERON:0001030 +name: obsolete synaptic ribbon +synonym: "ribbon synapse" EXACT [] +is_obsolete: true +consider: FBbt:00005143 +consider: FMA:67107 +consider: GO:0048788 +consider: NIF_Subcellular:sao1884931180 + +[Term] +id: UBERON:0001031 +name: sheath of Schwann +def: "The outermost nucleated cytoplasmic layer of Schwann cells that surrounds the axon of the neuron. It forms the outermost layer of the nerve fiber in the peripheral nervous system. The neurolemma is underlain by the basal lamina (referred to as the medullary sheath in the included illustrations. In CNS, axons are myelinated by oligodendrocytes, thus lack neurolemma." [http://en.wikipedia.org/wiki/Neurolemma] +subset: uberon_slim +synonym: "endoneural membrane" RELATED [BTO:0003048] +synonym: "neurilemma" EXACT [FMA:62976] +synonym: "neurolemma" EXACT [] +synonym: "Schwann's membrane" RELATED [BTO:0003048] +synonym: "sheath of Schwann" EXACT [] +xref: BTO:0003048 +xref: FMA:62976 +xref: GAID:730 +xref: http://en.wikipedia.org/wiki/Neurilemma +xref: http://linkedlifedata.com/resource/umls/id/C0027807 +xref: MESH:D009441 +xref: NCIT:C33544 +xref: UMLS:C0027807 {source="ncithesaurus:Sheath_of_Schwann"} +is_a: UBERON:0000119 ! cell layer +relationship: part_of UBERON:0000010 ! peripheral nervous system + +[Term] +id: UBERON:0001032 +name: sensory system +def: "Anatomical system that overlaps the nervous system and is responsible for receiving and processing sensory information." [http://en.wikipedia.org/wiki/Sensory_system] +subset: efo_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "organa sensuum" EXACT LATIN [FMA:75259, FMA:TA] +synonym: "organa sensuum" RELATED LATIN [http://en.wikipedia.org/wiki/Sensory_system] +synonym: "sense organ subsystem" EXACT [] +synonym: "sense organs" EXACT [FMA:75259] +synonym: "sense organs set" EXACT [FMA:75259] +synonym: "sensory organ system" RELATED [] +synonym: "sensory subsystem" EXACT [] +synonym: "sensory systems" EXACT PLURAL [TAO:0000282] +synonym: "set of sense organs" RELATED [FMA:75259] +xref: AAO:0000555 +xref: BAMS:SEN +xref: BILA:0000099 +xref: EFO:0000805 +xref: EHDAA2:0003094 +xref: EMAPA:16192 +xref: FBbt:00007692 +xref: FMA:75259 +xref: MA:0002442 +xref: MAT:0000031 +xref: MIAA:0000031 +xref: NLXANAT:090816 +xref: Sensory:system +xref: TAO:0000282 +xref: VHOG:0001674 +xref: XAO:0003194 +xref: ZFA:0000282 +is_a: UBERON:0000467 ! anatomical system +relationship: part_of UBERON:0004456 ! entire sense organ system + +[Term] +id: UBERON:0001033 +name: gustatory system +def: "The sensory system for the sense of taste." [NLXANAT:090803] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "gustatory organ system" EXACT [] +synonym: "taste system" EXACT [] +xref: AAO:0010577 +xref: BILA:0000143 +xref: EFO:0000830 +xref: FMA:7194 +xref: Gustatory:system +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2889 +xref: http://www.snomedbrowser.com/Codes/Details/423940004 +xref: MA:0002446 +xref: MAT:0000275 +xref: MIAA:0000275 +xref: NLXANAT:090803 +xref: TAO:0001101 +xref: XAO:0003197 +xref: ZFA:0001101 +is_a: UBERON:0000467 ! anatomical system +disjoint_from: UBERON:0001434 ! skeletal system +disjoint_from: UBERON:0002204 ! musculoskeletal system +disjoint_from: UBERON:0002294 ! biliary system +disjoint_from: UBERON:0002330 ! exocrine system +disjoint_from: UBERON:0002390 ! hematopoietic system +disjoint_from: UBERON:0002405 ! immune system +disjoint_from: UBERON:0002416 ! integumental system +disjoint_from: UBERON:0002423 ! hepatobiliary system +disjoint_from: UBERON:0004456 ! entire sense organ system +relationship: existence_ends_during UBERON:0000066 ! fully formed stage + +[Term] +id: UBERON:0001034 +name: obsolete photoreceptor +def: "Can refer to a light sensitive organ, a photoreceptor cell or a photoreceptor protein. This class was made obsolete because it was ambiguous" [http://en.wikipedia.org/wiki/Photoreceptor] +xref: BTO:0001060 +xref: http://en.wikipedia.org/wiki/Photoreceptor +is_obsolete: true +consider: CL:0000210 +consider: FBbt:00005162 +consider: FMA:85613 +consider: GAID:778 + +[Term] +id: UBERON:0001035 +name: dento-alveolar joint +def: "A joint that binds the teeth to the alveolar ridge." [http://en.wikipedia.org/wiki/Gomphosis, http://orcid.org/0000-0002-6601-2165] +synonym: "dento-alveolar syndesmosis" EXACT [FMA:7495] +synonym: "gomphosis" EXACT [MA:0001499] +synonym: "peg-and-socket joint" EXACT [FMA:7495] +synonym: "socket" BROAD [FMA:7495] +synonym: "syndesmosis dentoalveolaris" EXACT LATIN [FMA:7495, FMA:TA] +xref: EMAPA:37464 {source="MA:th"} +xref: FMA:7495 +xref: http://en.wikipedia.org/wiki/Gomphosis +xref: http://www.snomedbrowser.com/Codes/Details/50870008 +xref: MA:0001499 +xref: OpenCyc:Mx4rveAQeZwpEbGdrcN5Y29ycA +is_a: UBERON:0002209 {source="FMA"} ! fibrous joint +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: connects UBERON:0001091 ! calcareous tooth +relationship: connects UBERON:0004103 ! alveolar ridge +relationship: part_of UBERON:0001708 ! jaw skeleton + +[Term] +id: UBERON:0001037 +name: strand of hair +def: "A filament, mostly protein, that grows from follicles found in the dermis[WP]." [http://en.wikipedia.org/wiki/Hair] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "coat hair" RELATED [] +synonym: "coat/ hair" RELATED [] +synonym: "fur" RELATED [] +synonym: "hair" EXACT [] +synonym: "microchaeta" RELATED [] +synonym: "quill" RELATED SENSU [] +synonym: "setulae" RELATED [] +synonym: "vibrissa" RELATED SENSU [] +synonym: "whisker" RELATED SENSU [] +xref: BTO:0001501 +xref: CALOHA:TS-0430 +xref: EFO:0000958 +xref: EMAPA:18769 +xref: EV:0100157 +xref: FMA:53667 +xref: GAID:71 +xref: http://en.wikipedia.org/wiki/Hair +xref: http://linkedlifedata.com/resource/umls/id/C0018494 +xref: http://www.snomedbrowser.com/Codes/Details/361702001 +xref: MA:0000155 +xref: MAT:0000160 +xref: MESH:D006197 +xref: MIAA:0000160 +xref: NCIT:C32705 +xref: OpenCyc:Mx4rvVjOX5wpEbGdrcN5Y29ycA-Mp88EdaAAACgycbRww +xref: UMLS:C0018494 {source="ncithesaurus:Hair"} +xref: VHOG:0001191 +is_a: UBERON:0000021 {source="FMA"} ! cutaneous appendage +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0002073 ! hair follicle +relationship: part_of UBERON:0001003 {source="FMA"} ! skin epidermis +relationship: part_of UBERON:0011932 {source="FMA"} ! pilosebaceous unit + +[Term] +id: UBERON:0001038 +name: chordotonal organ +def: "Chordotonal organs are arthropod sensory structures consisting of special sensilla called the scolopidia, which are mechano-transducers and respond mainly to stretch or flexion. In insects, they consist of bundles of internal sensilla, each of which has a cap cell, an enveloping cell and one or more sense cells. The distal end of the organ is usually attached to the cuticle of the body wall, marked by a pit, a thickened disc or a nodule of chitin, and the base of the organ is connected with the hypodermis, often by a special ligament." [FB:FBrf0056378, http://en.wikipedia.org/wiki/Chordotonal_organ] +comment: To be ceded to Arthropod anatomy ontology +subset: efo_slim +subset: organ_slim +subset: uberon_slim +synonym: "ch" RELATED [] +synonym: "scolopophorous organ" RELATED [] +xref: Chordotonal:organ +xref: EFO:0000940 +xref: FBbt:00005215 +xref: MAT:0000209 +xref: MIAA:0000209 +is_a: UBERON:0000020 ! sense organ + +[Term] +id: UBERON:0001040 +name: yolk sac +def: "A sac-like expansion of the ventral wall of the intestine, narrowed into a yolk stalk near the body[Hyman's]. Membranous sac attached to an embryo, providing early nourishment in the form of yolk in bony fishes, sharks, reptiles, birds, and primitive mammals. It functions as the developmental circulatory system of the human embryo, before internal circulation begins. In the mouse, the yolk sac is the first site of blood formation, generating primitive macrophages and erythrocytes[WP]." [http://en.wikipedia.org/wiki/Yolk_sac] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "saccus vitellinus" RELATED LATIN [http://en.wikipedia.org/wiki/Yolk_sac] +synonym: "vesicula umbilicalis" RELATED LATIN [http://en.wikipedia.org/wiki/Yolk_sac] +xref: BTO:0001471 +xref: CALOHA:TS-1130 +xref: EFO:0003078 +xref: EHDAA2:0002212 +xref: EHDAA:164 +xref: EMAPA:16085 +xref: FMA:87180 +xref: GAID:1301 +xref: http://linkedlifedata.com/resource/umls/id/C0043425 +xref: http://www.snomedbrowser.com/Codes/Details/362845002 +xref: MESH:A16.254.403.981 +xref: NCIT:C14128 +xref: UMLS:C0043425 {source="ncithesaurus:Yolk_Sac"} +xref: VHOG:0000830 +xref: Yolk:sac +is_a: UBERON:0005292 ! extraembryonic tissue +is_a: UBERON:0005631 {seeAlso="https://github.com/obophenotype/uberon/issues/635"} ! extraembryonic membrane +is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac +relationship: has_developmental_contribution_from UBERON:0000925 {source="ISBN:0073040584"} ! endoderm +relationship: has_developmental_contribution_from UBERON:0004872 {source="ISBN:0073040584"} ! splanchnic layer of lateral plate mesoderm + +[Term] +id: UBERON:0001041 +name: foregut +def: "Anterior subdivision of a digestive tract." [http://orcid.org/0000-0002-6601-2165] +subset: developmental_classification +subset: pheno_slim +subset: uberon_slim +synonym: "praeenteron" RELATED LATIN [http://en.wikipedia.org/wiki/Foregut] +synonym: "proenteron" RELATED LATIN [http://en.wikipedia.org/wiki/Foregut] +xref: AAO:0011042 +xref: BILA:0000085 +xref: BTO:0000507 +xref: EHDAA2:0000557 +xref: EHDAA:520 +xref: EMAPA:16548 +xref: FBbt:00005379 +xref: FMA:45616 +xref: http://en.wikipedia.org/wiki/Foregut +xref: http://linkedlifedata.com/resource/umls/id/C0231051 +xref: http://www.snomedbrowser.com/Codes/Details/361409009 +xref: MA:0001526 +xref: NCIT:C34180 +xref: TGMA:0001014 +xref: UMLS:C0231051 {source="ncithesaurus:Foregut"} +xref: VHOG:0000285 +xref: XAO:0000232 +is_a: UBERON:0004921 ! subdivision of digestive tract + +[Term] +id: UBERON:0001042 +name: chordate pharynx +def: "A portion of the respiratory and digestive tracts; its distal limit is the superior part of the esophagus and it connects the nasal and oral cavities with the esophagus and larynx; it contains the valleculae and the pyriform recesses; its upper limits are the nasal cavity and cranial base.[FEED]." [http://www.feedexp.org] +comment: Consider generalizing to deuterostome pharynx +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "pharynx" BROAD SENSU [FMA:46688] +xref: AAO:0000967 +xref: BTO:0001049 +xref: CALOHA:TS-0785 +xref: EFO:0000836 +xref: EHDAA2:0001458 +xref: EHDAA:2947 +xref: EMAPA:16706 +xref: EV:0100065 +xref: FMA:46688 +xref: GAID:155 +xref: galen:Pharynx +xref: http://en.wikipedia.org/wiki/Pharynx +xref: http://linkedlifedata.com/resource/umls/id/C0031354 +xref: http://www.snomedbrowser.com/Codes/Details/181211006 +xref: MA:0000432 +xref: MESH:A03.867 +xref: NCIT:C12425 +xref: OpenCyc:Mx4rvViv7ZwpEbGdrcN5Y29ycA +xref: TAO:0000056 +xref: UMLS:C0031354 {source="ncithesaurus:Pharynx"} +xref: VHOG:0000462 +xref: XAO:0003227 +xref: ZFA:0000056 +is_a: UBERON:0006562 ! pharynx +relationship: develops_from UBERON:0009145 {source="EHDAA2"} ! pharyngeal region of foregut +relationship: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0001043 +name: esophagus +def: "Tube that connects the pharynx to the stomach. In mammals, the oesophagus connects the buccal cavity with the stomach. The stratified squamous non-keratinised epithelium lining the buccal cavity is continued through the pharynx down into the oesophagus. The lowest part of the oesophagus (ca. 2 cm) is lined with gastric mucosa and covered by peritoneum. The main body of the oesophagus is lined with small, simple mucous glands. Each gland opens into the lumen by a long duct which pierces the muscularis mucosae (Wilson and Washington, 1989). A sphincter is situated at the point where the oesophagus enters the stomach to prevent gastro-oesophageal reflux, i.e. to prevent acidic gastric contents from reaching stratified epithelia of the oesophagus, where they can cause inflammation and irritation (Wilson and Washington, 1989; Brown et al., 1993)." [http://en.wikipedia.org/wiki/Esophagus, http://www.rivm.nl/interspeciesinfo/inter/oesophagus/] +subset: efo_slim +subset: major_organ +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "gullet" EXACT [] +synonym: "oesophagus" EXACT [] +xref: AAO:0000145 +xref: ANISEED:1235301 +xref: BTO:0000959 +xref: CALOHA:TS-0700 +xref: EFO:0000835 +xref: EHDAA2:0001285 +xref: EHDAA:2937 +xref: EMAPA:16833 +xref: EV:0100069 +xref: FMA:7131 +xref: GAID:291 +xref: galen:Esophagus +xref: http://en.wikipedia.org/wiki/Esophagus +xref: http://linkedlifedata.com/resource/umls/id/C0014876 +xref: http://www.snomedbrowser.com/Codes/Details/181245004 +xref: MA:0000352 +xref: MAT:0000048 +xref: MESH:A03.365 +xref: MIAA:0000048 +xref: NCIT:C12389 +xref: OpenCyc:Mx4rvVj9Q5wpEbGdrcN5Y29ycA +xref: TAO:0000204 +xref: UMLS:C0014876 {source="ncithesaurus:Esophagus"} +xref: VHOG:0000450 +xref: XAO:0000127 +xref: ZFA:0000204 +is_a: UBERON:0004921 ! subdivision of digestive tract +is_a: UBERON:0005178 ! thoracic cavity element +is_a: UBERON:0013765 ! digestive system element +relationship: develops_from UBERON:0001041 ! foregut +relationship: part_of UBERON:0004908 ! upper digestive tract +relationship: proximally_connected_to UBERON:0001042 ! chordate pharynx + +[Term] +id: UBERON:0001044 +name: saliva-secreting gland +def: "saliva-secreting exocrine glands of the oral cavity[GO]" [GO:0007431, http://en.wikipedia.org/wiki/Salivary_gland] +subset: efo_slim +subset: functional_classification +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "glandulae salivariae" RELATED LATIN [http://en.wikipedia.org/wiki/Salivary_gland] +synonym: "salivary gland" EXACT [MA:0000346] +xref: BTO:0001203 +xref: CALOHA:TS-0892 +xref: EFO:0000859 +xref: EHDAA2:0001775 +xref: EHDAA:7987 +xref: EMAPA:17751 +xref: EV:0100059 +xref: FBbt:00005382 +xref: FMA:9597 +xref: GAID:937 +xref: galen:SalivaryGland +xref: http://linkedlifedata.com/resource/umls/id/C0036098 +xref: http://www.snomedbrowser.com/Codes/Details/181236000 +xref: MA:0000346 +xref: MAT:0000079 +xref: MESH:D012469 +xref: MIAA:0000079 +xref: NCIT:C12426 +xref: OpenCyc:Mx4rvVjl5ZwpEbGdrcN5Y29ycA +xref: Salivary:gland +xref: UMLS:C0036098 {source="ncithesaurus:Salivary_Gland"} +xref: VHOG:0000376 +is_a: UBERON:0010047 ! oral gland +intersection_of: UBERON:0002530 ! gland +intersection_of: produces UBERON:0001836 ! saliva +relationship: contributes_to_morphology_of UBERON:0001007 ! digestive system +relationship: located_in UBERON:0000167 ! oral cavity +relationship: produces UBERON:0001836 ! saliva + +[Term] +id: UBERON:0001045 +name: midgut +def: "Middle subdivision of a digestive tract[CJM]. In vertebrates: The middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine[GO]." [GO:0007494, http://en.wikipedia.org/wiki/Midgut] +subset: developmental_classification +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "mesenteron" RELATED LATIN [http://en.wikipedia.org/wiki/Midgut] +xref: BILA:0000086 +xref: BTO:0000863 +xref: EFO:0001950 +xref: EHDAA2:0001185 +xref: EHDAA:983 +xref: EMAPA:16255 +xref: FBbt:00005383 +xref: FMA:45617 +xref: http://en.wikipedia.org/wiki/Midgut +xref: http://linkedlifedata.com/resource/umls/id/C0231052 +xref: http://www.snomedbrowser.com/Codes/Details/361410004 +xref: MA:0001564 +xref: NCIT:C34210 +xref: TGMA:0001036 +xref: UMLS:C0231052 {source="ncithesaurus:Midgut"} +xref: VHOG:0000290 +xref: XAO:0000103 +is_a: UBERON:0004921 ! subdivision of digestive tract +relationship: proximally_connected_to UBERON:0001041 ! foregut + +[Term] +id: UBERON:0001046 +name: hindgut +def: "The caudalmost subdivision of a digestive tract." [http://orcid.org/0000-0002-6601-2165] +subset: developmental_classification +subset: pheno_slim +subset: uberon_slim +synonym: "metenteron" RELATED LATIN [http://en.wikipedia.org/wiki/Hindgut] +xref: AAO:0011052 +xref: BILA:0000087 +xref: BTO:0000510 +xref: EHDAA2:0000779 +xref: EHDAA:975 +xref: EMAPA:16715 +xref: FBbt:00005384 +xref: FMA:45618 +xref: http://en.wikipedia.org/wiki/Hindgut +xref: http://linkedlifedata.com/resource/umls/id/C0231053 +xref: http://www.snomedbrowser.com/Codes/Details/362856002 +xref: MA:0001527 +xref: NCIT:C34188 +xref: TGMA:0001020 +xref: UMLS:C0231053 {source="ncithesaurus:Hindgut"} +xref: VHOG:0000459 +xref: XAO:0000104 +is_a: UBERON:0004921 ! subdivision of digestive tract +relationship: develops_from UBERON:0003104 {source="Wikipedia"} ! mesenchyme +relationship: proximally_connected_to UBERON:0001045 ! midgut + +[Term] +id: UBERON:0001047 +name: neural glomerulus +alt_id: UBERON:FBbt_00005386 +def: "Large synaptic bouton found in areas like olfactory bulb, cerebellar cortex and thalamus, that contacts many post-synaptic targets[NIF]." [http://ccdb.ucsd.edu/SAO/images/glomerulus_sw_512x512.jpg, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] +comment: isa or partof neuropil? TODO. Add to GO-CC? +subset: uberon_slim +synonym: "glomerulus" BROAD [FBbt:00005386, NIF_Subcellular:sao587858733] +xref: FBbt:00005386 +xref: NIF_Subcellular:sao587858733 +is_a: UBERON:0002606 ! neuropil + +[Term] +id: UBERON:0001048 +name: primordium +def: "Primordia are populations of contiguous cells that are morphologically distinct and already correspond in extent to a later organ/tissue[FBbt, Hartenstein, V. (2004)]." [BTO:0001886, FB:DJS, FB:FBrf0089570, http://flybase.org/reports/FBrf0178740.html] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "bud" RELATED [] +synonym: "future organ" RELATED [] +synonym: "placode" RELATED [FBbt:00005495] +synonym: "primordia" RELATED PLURAL [XAO:0003043] +synonym: "rudiment" RELATED [] +xref: AEO:0000171 +xref: BTO:0001886 +xref: EFO:0001652 +xref: EHDAA2:0003171 +xref: FBbt:00005495 +xref: FMA:86589 +xref: http://en.wikipedia.org/wiki/Primordium +xref: http://linkedlifedata.com/resource/umls/id/C0678727 +xref: MAT:0000482 +xref: NCIT:C34275 +xref: UMLS:C0678727 {source="ncithesaurus:Primordium"} +xref: XAO:0003043 +is_a: UBERON:0005423 {source="EHDAA2"} ! developing anatomical structure +relationship: part_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0001049 +name: neural tube +def: "In the developing vertebrate, the neural tube is the embryo's precursor to the central nervous system, which comprises the brain and spinal cord. The neural groove gradually deepens as the neural folds become elevated, and ultimately the folds meet and coalesce in the middle line and convert the groove into a closed tube, the neural tube or neural canal (which strictly speaking is the center of the neural tube), the ectodermal wall of which forms the rudiment of the nervous system. [WP,unvetted]." [http://en.wikipedia.org/wiki/Neural_tube] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "neural primordium" RELATED [] +synonym: "presumptive central nervous system" RELATED [] +synonym: "tubus neuralis" RELATED LATIN [http://en.wikipedia.org/wiki/Neural_tube] +xref: AAO:0010617 +xref: BTO:0001057 +xref: CALOHA:TS-2371 +xref: DHBA:10154 +xref: EHDAA2:0001254 +xref: EHDAA:2869 +xref: EHDAA:908 +xref: EMAPA:16164 +xref: EMAPA:16757 +xref: FMA:293882 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1365 +xref: http://linkedlifedata.com/resource/umls/id/C0231024 +xref: http://www.snomedbrowser.com/Codes/Details/362852000 +xref: MAT:0000069 +xref: MIAA:0000069 +xref: NCIT:C34226 +xref: Neural:tube +xref: TAO:0001135 +xref: UMLS:C0231024 {source="ncithesaurus:Neural_Tube"} +xref: VHOG:0000307 +xref: XAO:0003204 +xref: ZFA:0001135 +is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium +is_a: UBERON:0016879 ! future central nervous system +relationship: develops_from UBERON:0005068 ! neural rod + +[Term] +id: UBERON:0001050 +name: obsolete atrium +comment: obsoleted because 'atrium' as a general grouping class that encompasses the cardiac atrium and atrium of alveolus atrium is of questionable value. Furthermore, the use of the term 'atrium' in the generic sense is misleading, as this is commonly used to refer specifically to the cardiac atrium +is_obsolete: true +consider: FMA:85574 +consider: UBERON:0002081 + +[Term] +id: UBERON:0001051 +name: hypopharynx +def: "Bottom part of the pharynx that connects to the esophagus." [http://en.wikipedia.org/wiki/Hypopharynx] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "laryngeal pharynx" EXACT [FMA:54877] +synonym: "laryngopharynx" EXACT [FMA:54877] +synonym: "pars laryngea pharyngis" RELATED LATIN [http://en.wikipedia.org/wiki/Hypopharynx] +synonym: "pars laryngea pharyngis" RELATED [BTO:0001740] +xref: BTO:0001740 +xref: CALOHA:TS-2020 +xref: EFO:0001388 +xref: EHDAA2:0004574 +xref: EV:0100068 +xref: FMA:54880 +xref: GAID:338 +xref: http://en.wikipedia.org/wiki/Hypopharynx +xref: http://linkedlifedata.com/resource/umls/id/C0020629 +xref: http://www.snomedbrowser.com/Codes/Details/281490009 +xref: MA:0001796 +xref: MESH:A03.867.490 +xref: NCIT:C12246 +xref: OpenCyc:Mx4rvq5O0JwpEbGdrcN5Y29ycA +xref: UMLS:C0020629 {source="ncithesaurus:Hypopharynx"} +xref: VHOG:0000445 +is_a: UBERON:0013522 ! subdivision of tube +relationship: continuous_with UBERON:0013472 ! upper esophagus +relationship: contributes_to_morphology_of UBERON:0001042 ! chordate pharynx +relationship: part_of UBERON:0001042 ! chordate pharynx + +[Term] +id: UBERON:0001052 +name: rectum +def: "the terminal portion of the intestinal tube, terminating with the anus" [http://orcid.org/0000-0002-6601-2165, ISBN:0-683-40008-8, MP:0000492] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "intestinum rectum" RELATED [BTO:0001158] +synonym: "rectal sac" RELATED [] +synonym: "terminal portion of intestine" EXACT [] +synonym: "terminal portion of large intestine" RELATED [] +xref: AAO:0010401 +xref: BTO:0001158 +xref: CALOHA:TS-1180 +xref: EFO:0000848 +xref: EHDAA2:0001592 +xref: EHDAA:5836 +xref: EMAPA:17896 +xref: EV:0100081 +xref: FMA:14544 +xref: GAID:311 +xref: galen:Rectum +xref: http://en.wikipedia.org/wiki/Rectum +xref: http://linkedlifedata.com/resource/umls/id/C0034896 +xref: http://www.snomedbrowser.com/Codes/Details/181261002 +xref: MA:0000336 +xref: MAT:0000050 +xref: MESH:A03.492.411.495.767 +xref: MIAA:0000050 +xref: NCIT:C12390 +xref: OpenCyc:Mx4rvVjaU5wpEbGdrcN5Y29ycA +xref: UMLS:C0034896 {source="ncithesaurus:Rectum"} +xref: VHOG:0001751 +xref: XAO:0000238 +is_a: UBERON:0004921 {order="4", source="cjm"} ! subdivision of digestive tract +relationship: continuous_with UBERON:0001159 ! sigmoid colon +relationship: contributes_to_morphology_of UBERON:0000059 ! large intestine +relationship: distalmost_part_of UBERON:0000059 {source="ISBN:0073040584"} ! large intestine +relationship: part_of UBERON:0000059 {source="MA"} ! large intestine +relationship: part_of UBERON:0006866 ! terminal part of digestive tract +relationship: part_of UBERON:0012361 {source="EHDAA2"} ! internal anal region + +[Term] +id: UBERON:0001053 +name: arthropod neurohemal organ +def: "A system of neurons that has the specialized function to produce and secrete hormones, and that constitutes, in whole or in part, an endocrine organ or system." [BTO:0002106] +comment: brain areas from which substances enter blood for example, the neurohypophysis from which oxytocin and vasopressin enter blood. +subset: efo_slim +subset: organ_slim +synonym: "neurohaemal organ" RELATED [] +xref: BTO:0002106 +xref: EFO:0000864 +xref: FBbt:00005757 +xref: MAT:0000212 +xref: MIAA:0000212 +is_a: UBERON:0010133 ! neuroendocrine gland + +[Term] +id: UBERON:0001054 +name: Malpighian tubule +def: "A tubule that extends from the posterior part of the digestive tract which absorbs solutes, water, and wastes from the surrounding hemolymph. Each tubule consists of a single layer of cells that is closed off at the distal end with the proximal end joining the alimentary canal at the junction between the midgut and hindgut[WP,modified]." [http://en.wikipedia.org/wiki/Malpighian_tubule_system] +subset: efo_slim +subset: uberon_slim +synonym: "Malphigian tube" RELATED MISSPELLING [BTO:0000810] +synonym: "Malpighian tube" RELATED [UBERON:cjm] +synonym: "tuba Malpighii" RELATED [BTO:0000810] +xref: BTO:0000810 +xref: EFO:0000243 +xref: FBbt:00005786 +xref: GAID:1228 +xref: http://www.snomedbrowser.com/Codes/Details/41055008 +xref: Malpighian:tubule +xref: MAT:0000123 +xref: MESH:D008317 +xref: MIAA:0000123 +xref: TADS:0000163 +xref: TGMA:0001038 +is_a: UBERON:0009773 {source="GO"} ! renal tubule + +[Term] +id: UBERON:0001055 +name: obsolete ureter +is_obsolete: true +consider: UBERON:0000056 +consider: UBERON:0000057 + +[Term] +id: UBERON:0001056 +name: corpus cardiacum +def: "One of a pair of neurohemal organs located on the walls of the aorta just behind the brain. The corpora cardiaca release their store of PTTH only after they receive a signal from neurosecretory cells in the brain." [BTO:0000432, http://en.wikipedia.org/wiki/Corpus_cardiacum#Endocrine_system, http://www.cals.ncsu.edu/course/ent425/tutorial/endocrine.html] +comment: will be ceded to arthropod anatomy ontology +subset: efo_slim +synonym: "corpora cardiaca" RELATED PLURAL [BTO:0000432] +xref: BTO:0000432 +xref: EFO:0000380 +xref: FBbt:00005799 +xref: MAT:0000211 +xref: MIAA:0000211 +is_a: UBERON:0001053 ! arthropod neurohemal organ +relationship: part_of UBERON:0012325 {source="BTO-modified"} ! retrocerebral complex + +[Term] +id: UBERON:0001057 +name: corpus allatum +def: "One of a pair of separate or fused bodies in many insects that are sometimes closely associated with the corpora cardiaca and that secrete hormones (as juvenile hormone)[BTO]." [BTO:0000291, http://en.wikipedia.org/wiki/Corpora_allata, http://www.cals.ncsu.edu/course/ent425/tutorial/endocrine.html] +comment: will be ceded to arthropod anatomy ontology +subset: efo_slim +subset: uberon_slim +synonym: "corpora allata" RELATED PLURAL [BTO:0000291] +xref: BTO:0000291 +xref: EFO:0000379 +xref: FBbt:00005800 +xref: MAT:0000210 +xref: MESH:D003335 +xref: MIAA:0000210 +is_a: UBERON:0002368 {source="BTO"} ! endocrine gland +relationship: part_of UBERON:0012325 {source="BTO-modified"} ! retrocerebral complex + +[Term] +id: UBERON:0001058 +name: mushroom body +def: "Prominent lobed neuropils found in annelids and all arthropods except crustaceans. They are thought to be involved in olfactory associative learning and memory[MESH] Mushroom body neuropils are divided into calyces, pedunculus, and its subsequent lobes. In Drosophila these are the alpha, beta, and gamma lobes." [http://en.wikipedia.org/wiki/Mushroom_body, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, MESH:A13.641] +subset: efo_slim +subset: uberon_slim +synonym: "corpora pedunculata" RELATED [FBbt:00005801, http://www.ncbi.nlm.nih.gov/pubmed/21062451] +synonym: "corps pédonculés@fr" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/21062451] +synonym: "mushroom bodies" EXACT PLURAL [] +xref: BTO:0002675 +xref: EFO:0000925 +xref: FBbt:00005801 +xref: GAID:1231 +xref: MAT:0000336 +xref: MESH:D024521 +xref: MIAA:0000336 +xref: Mushroom:body +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0000955 ! brain +relationship: present_in_taxon NCBITaxon:6340 +relationship: present_in_taxon NCBITaxon:6656 + +[Term] +id: UBERON:0001059 +name: pars intercerebralis +def: "A neurosecretory center of the insect brain, located along the anterior midline[wiktionary]. A medial cleft or depression dividing the left and right protocerebrum and containing numerous large and small somata of neurosecretory and neuromodulatory neurons[FBbt]." [http://en.wiktionary.org/wiki/pars_intercerebralis, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] +comment: will be ceded to arthropod anatomy ontology +subset: efo_slim +subset: uberon_slim +xref: EFO:0000926 +xref: FBbt:00005802 +xref: MAT:0000337 +xref: MIAA:0000337 +is_a: UBERON:0011215 ! central nervous system cell part cluster +relationship: part_of UBERON:0000955 {source="FBbt"} ! brain + +[Term] +id: UBERON:0001062 +name: anatomical entity +def: "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [FMA:62955, http://orcid.org/0000-0001-9114-8737] +subset: upper_level +xref: AAO:0010841 +xref: AEO:0000000 +xref: BILA:0000000 +xref: BIRNLEX:6 +xref: CARO:0000000 +xref: EHDAA2:0002229 +xref: FBbt:10000000 +xref: FBbt_root:00000000 +xref: FMA:62955 +xref: HAO:0000000 +xref: http://linkedlifedata.com/resource/umls/id/C1515976 +xref: MA:0000001 +xref: NCIT:C12219 +xref: TAO:0100000 +xref: TGMA:0001822 +xref: UMLS:C1515976 {source="ncithesaurus:Anatomic_Structure_System_or_Substance"} +xref: WBbt:0000100 +xref: XAO:0000000 +xref: ZFA:0100000 + +[Term] +id: UBERON:0001063 +name: flocculus +alt_id: UBERON:Flocculus-MA_0000992 +def: "the small lobe of the cerebellum at the posterior border of the middle cerebellar peduncle anterior to the biventer lobule that receives input from the inferior and medial vestibular nuclei and sends fibers back to the vestibular nuclei, and processes and integrates these signals to allow for the constant maintenance of balance" [http://en.wikipedia.org/wiki/Flocculus_(cerebellar), http://orcid.org/0000-0002-6601-2165, ISBN:0838580343, MGI:csmith, MP:0010006] +subset: pheno_slim +subset: uberon_slim +synonym: "flocculus of cerebellum" EXACT [FMA:83881] +synonym: "H X" RELATED [FMA:83881] +synonym: "hemispheric lobule X" RELATED INCONSISTENT [NLXANAT:20081213] +synonym: "lobule H X of Larsell" RELATED [FMA:83881] +synonym: "lobule X" RELATED [FMA:83881] +synonym: "lobule X of hemisphere of cerebellum" RELATED [FMA:83881] +synonym: "neuraxis flocculus" EXACT [FMA:83881] +xref: BAMS:FL +xref: BAMS:Fl +xref: BIRNLEX:1329 +xref: DMBA:16946 +xref: EMAPA:35346 +xref: Flocculus:(cerebellar) +xref: FMA:83881 +xref: HBA:12945 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=680 +xref: http://www.snomedbrowser.com/Codes/Details/279368002 +xref: http://www.snomedbrowser.com/Codes/Details/30711003 +xref: MA:0000992 +xref: MBA:1049 +is_a: UBERON:0027331 ! flocculonodular lobe, hemisphere portion +relationship: contributes_to_morphology_of UBERON:0002245 ! cerebellar hemisphere + +[Term] +id: UBERON:0001064 +name: ventral pancreatic duct +alt_id: UBERON:0005627 +def: "A duct joining the pancreas to the common bile duct to supply pancreatic juices which aid in digestion provided by the exocrine pancreas. The pancreatic duct joins the common bile duct just prior to the ampulla of Vater, after which both ducts perforate the medial side of the second portion of the duodenum at the major duodenal papilla." [http://en.wikipedia.org/wiki/Pancreatic_duct] +subset: uberon_slim +synonym: "canal of Wirsung" RELATED [BTO:0002362] +synonym: "chief pancreatic duct" EXACT [FMA:16003] +synonym: "duct of Wirsung" EXACT [http://en.wikipedia.org/wiki/Pancreatic_duct] +synonym: "ductus pancreatis ventralis" RELATED [] +synonym: "hepaticopancreatic duct" RELATED [BTO:0002362] +synonym: "main pancreatic duct" EXACT [MA:0000126] +synonym: "pancreatic duct" BROAD [MESH:A03.734.667] +xref: BTO:0002362 +xref: EHDAA2:0001396 +xref: EHDAA:6905 +xref: EMAPA:17510 +xref: FMA:16003 +xref: GAID:337 +xref: http://linkedlifedata.com/resource/umls/id/C0030288 +xref: http://www.snomedbrowser.com/Codes/Details/245385001 +xref: MA:0000126 +xref: MESH:D010183 +xref: NCIT:C12272 +xref: Pancreatic:duct +xref: RETIRED_EHDAA2:0002177 +xref: UMLS:C0030288 {source="ncithesaurus:Pancreatic_Duct"} +xref: VHOG:0000256 +is_a: UBERON:0000025 ! tube +is_a: UBERON:0007329 {source="FMA"} ! pancreatic duct +relationship: channel_for UBERON:0001970 ! bile +relationship: channels_into UBERON:0004913 ! hepatopancreatic ampulla +relationship: continuous_with UBERON:0001174 ! common bile duct +relationship: develops_from UBERON:0003924 {source="EHDAA2"} ! ventral pancreatic bud + +[Term] +id: UBERON:0001065 +name: parotid main excretory duct +def: "The main excretory tubular canal that connects the parotid gland and the buccal mucosa and secretes a serous saliva into the vestibule of the oral cavity; it arises from the anterior surface of the gland, traversing the masseter muscle; the duct then pierces the buccinator muscle, moving medially, and opens out into the oral cavity near the second upper molar; saliva produced by acinar secretory cells in the glandular body flows sequentially through the intercalated ducts, striated ducts, and excretory ducts." [MP:0009530] +subset: pheno_slim +subset: uberon_slim +synonym: "duct of parotid" BROAD [OBOL:automatic] +synonym: "duct of parotid gland" BROAD [] +synonym: "ductus parotideus" RELATED LATIN [http://en.wikipedia.org/wiki/Parotid_duct] +synonym: "ductus stenonianus" RELATED LATIN [BTO:0004554] +synonym: "excretory duct of parotid gland" BROAD [] +synonym: "main duct of parotid gland" EXACT [] +synonym: "main excretory duct of parotid gland" EXACT [] +synonym: "parotid duct" BROAD [MA:0002697] +synonym: "parotid excretory duct" BROAD [] +synonym: "parotid gland duct" BROAD [OBOL:automatic] +synonym: "Stenon duct" EXACT [] +synonym: "stenonianus" RELATED [BTO:0004554] +synonym: "Stensen's duct" EXACT [] +synonym: "Stensens's duct" EXACT [] +xref: BTO:0004554 +xref: EMAPA:36563 +xref: FMA:10420 +xref: http://linkedlifedata.com/resource/umls/id/C0227458 +xref: http://www.snomedbrowser.com/Codes/Details/362175009 +xref: MA:0002697 +xref: NCIT:C33277 +xref: Parotid:duct +xref: UMLS:C0227458 {source="ncithesaurus:Parotid_Duct"} +is_a: UBERON:0035048 ! parotid gland excretory duct +relationship: channels_from UBERON:0001831 ! parotid gland +relationship: contributes_to_morphology_of UBERON:0001831 ! parotid gland + +[Term] +id: UBERON:0001066 +name: intervertebral disk +def: "A pad of fibrocartilage between the articular surfaces of two successive vertebral centra which has nucleus pulposus at its core." [http://en.wikipedia.org/wiki/Intervertebral_disk, ISBN:0073040584] +comment: whose gel-like core is nucleus puloposus, by this definition only in mammals +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "discus intervertebralis" EXACT LATIN [FMA:10446, FMA:TA] +synonym: "intervertebral disc" EXACT [] +synonym: "intervertebral fibrocartilage" RELATED [BTO:0003625] +synonym: "spinal disc" EXACT [http://en.wikipedia.org/wiki/Spinal_disc] +synonym: "spinal disk" RELATED [BTO:0003625] +xref: BTO:0003625 +xref: EFO:0001370 +xref: EMAPA:32739 +xref: FMA:10446 +xref: GAID:105 +xref: http://linkedlifedata.com/resource/umls/id/C0021815 +xref: http://www.snomedbrowser.com/Codes/Details/244570000 +xref: Intervertebral:disk +xref: MA:0000110 +xref: MESH:A02.165.410 +xref: NCIT:C49571 +xref: OpenCyc:Mx4rv11AcpwpEbGdrcN5Y29ycA +xref: UMLS:C0021815 {source="ncithesaurus:Intervertebral_Disc"} +is_a: UBERON:0011135 ! intervertebral cartilage +intersection_of: UBERON:0011135 ! intervertebral cartilage +intersection_of: has_part UBERON:0002242 ! nucleus pulposus +relationship: has_part UBERON:0002242 ! nucleus pulposus + +[Term] +id: UBERON:0001067 +name: vertebral arch joint +def: "A synovial joint between the prezygapophysis of one vertebra and the postzygapophysis of the vertebra directly above it. There are two facet joints in each spinal motion segment[WP]." [http://en.wikipedia.org/wiki/Zygapophysial_joint] +subset: pheno_slim +subset: uberon_slim +synonym: "articulationes zygapophysiales" RELATED LATIN [http://en.wikipedia.org/wiki/Zygapophysial_joint] +synonym: "facet joint" EXACT [] +synonym: "joint of vertebral arch" EXACT [] +synonym: "joint of vertebral articular process" EXACT [] +synonym: "spinal facet joint" EXACT [HP:0008482] +synonym: "zygapophyseal joint" EXACT [] +synonym: "zygapophysial joint" EXACT [] +xref: FMA:10447 +xref: GAID:275 +xref: http://linkedlifedata.com/resource/umls/id/C0224521 +xref: http://www.snomedbrowser.com/Codes/Details/89836005 +xref: MA:0001513 +xref: MESH:D021801 +xref: NCIT:C32577 +xref: OpenCyc:Mx4rvorHEpwpEbGdrcN5Y29ycA +xref: UMLS:C0224521 {source="ncithesaurus:Facet_Joint"} +xref: Zygapophysial:joint +is_a: UBERON:0002217 ! synovial joint +intersection_of: UBERON:0002217 ! synovial joint +intersection_of: connects UBERON:0001079 ! prezygapophysis +intersection_of: connects UBERON:0001080 ! postzygapophysis +relationship: connects UBERON:0001079 ! prezygapophysis +relationship: connects UBERON:0001080 ! postzygapophysis +relationship: part_of UBERON:0003861 ! neural arch + +[Term] +id: UBERON:0001068 +name: skin of back +def: "A zone of skin that is part of a back [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "back skin" EXACT [] +synonym: "back zone of skin" EXACT [OBOL:automatic] +synonym: "skin, dorsal region" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "zone of skin of back" EXACT [OBOL:automatic] +xref: EMAPA:36392 +xref: FMA:10462 +xref: FMA:22985 +xref: http://www.snomedbrowser.com/Codes/Details/181492002 +xref: MA:0000498 +is_a: UBERON:0001085 {source="MA"} ! skin of trunk +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0001137 ! dorsum +relationship: part_of UBERON:0011270 {source="MA"} ! dorsal trunk + +[Term] +id: UBERON:0001069 +name: head of pancreas +def: "The head of pancreas is a portion of the pancreas that is lodged within the curve of the duodenum, and is flattened anteriorly (from before). The other parts of the pancreas are the body and the tail. Its upper border is overlapped by the superior part of the duodenum and its lower overlaps the horizontal part; its right and left borders overlap in front, and insinuate themselves behind, the descending and ascending parts of the duodenum respectively. [WP,unvetted]." [http://en.wikipedia.org/wiki/Head_of_pancreas] +subset: uberon_slim +synonym: "caput pancreatis" RELATED LATIN [http://en.wikipedia.org/wiki/Head_of_pancreas] +synonym: "pancreas head" EXACT [] +synonym: "pancreatic head" EXACT [] +synonym: "right extremity of pancreas" EXACT [] +xref: EHDAA2:0001374 +xref: EMAPA:17507 +xref: FMA:10468 +xref: http://en.wikipedia.org/wiki/Head_of_pancreas +xref: http://linkedlifedata.com/resource/umls/id/C0227579 +xref: http://www.snomedbrowser.com/Codes/Details/362201006 +xref: MA:0000122 +xref: NCIT:C12269 +xref: UMLS:C0227579 {source="ncithesaurus:Head_of_the_Pancreas"} +xref: VHOG:0000448 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: develops_from UBERON:0003924 {source="EHDAA2-inferred", source="WP"} ! ventral pancreatic bud +relationship: part_of UBERON:0001264 ! pancreas + +[Term] +id: UBERON:0001070 +name: external carotid artery +def: "A terminal branch of the left or right common carotid artery which supplies oxygenated blood to to the throat, neck glands, tongue, face, mouth, ear, scalp and dura mater of the meninges[MP]" [MGI:anna] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "arteria carotis externa" RELATED LATIN [http://en.wikipedia.org/wiki/External_carotid_artery] +synonym: "external carotid" EXACT [AAO:0010218] +xref: AAO:0010218 +xref: AAO:0010416 +xref: BTO:0004696 +xref: EFO:0001953 +xref: EHDAA2:0000461 +xref: EMAPA:18611 +xref: FMA:10635 +xref: GAID:480 +xref: http://en.wikipedia.org/wiki/External_carotid_artery +xref: http://linkedlifedata.com/resource/umls/id/C0007275 +xref: http://www.snomedbrowser.com/Codes/Details/362044002 +xref: MA:0001929 +xref: MESH:D002342 +xref: NCIT:C32551 +xref: OpenCyc:Mx4rwVJkPZwpEbGdrcN5Y29ycA +xref: UMLS:C0007275 {source="ncithesaurus:External_Carotid_Artery"} +xref: VHOG:0000265 +xref: XAO:0000345 +is_a: UBERON:0005396 {source="MA"} ! carotid artery segment +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: branching_part_of UBERON:0001530 {source="FMA"} ! common carotid artery plus branches +relationship: develops_from UBERON:0001530 {source="EHDAA2"} ! common carotid artery plus branches +relationship: part_of UBERON:0001530 {source="FMA"} ! common carotid artery plus branches + +[Term] +id: UBERON:0001071 +name: superficial cervical artery +def: "It ascends beneath the anterior margin of the trapezius, distributing branches to it, and to the neighboring muscles and lymph glands in the neck, and anastomosing with the superficial branch of the descending branch of the occipital artery." [http://en.wikipedia.org/wiki/Superficial_part_of_transverse_cervical_artery] +comment: The transverse cervical artery splits into two branches, a superficial one and a deep one[WP] +subset: uberon_slim +synonym: "superficial branch of transverse cervical artery" EXACT [http://en.wikipedia.org/wiki/Superficial_part_of_transverse_cervical_artery] +xref: EMAPA:37117 {source="MA:th"} +xref: FMA:10665 +xref: http://en.wikipedia.org/wiki/Superficial_part_of_transverse_cervical_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226271 +xref: http://www.snomedbrowser.com/Codes/Details/161746006 +xref: MA:0002052 +xref: NCIT:C53005 +xref: UMLS:C0226271 {source="ncithesaurus:Superficial_Cervical_Artery"} +is_a: UBERON:0012320 ! cervical artery +intersection_of: UBERON:0012320 ! cervical artery +intersection_of: part_of UBERON:0035549 ! vasculature of integument +relationship: part_of UBERON:0035549 ! vasculature of integument + +[Term] +id: UBERON:0001072 +name: posterior vena cava +def: "A vein that carries deoxygenated blood from the lower half of the body into the right atrium of the heart." [http://en.wikipedia.org/wiki/Inferior_vena_cava, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "caudal vena cava" RELATED [VHOG:0001194] +synonym: "inferior caval vein" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "inferior vena cava" EXACT [http://en.wikipedia.org/wiki/Venae_cavae] +synonym: "postcava" RELATED [] +synonym: "posterior vena cava" EXACT [http://en.wikipedia.org/wiki/Venae_cavae] +synonym: "vena cava inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_vena_cava] +synonym: "vena cava inferior" RELATED [BTO:0002682] +xref: AAO:0011083 +xref: BTO:0002682 +xref: EHDAA2:0000611 +xref: EMAPA:18416 +xref: FMA:10951 +xref: GAID:548 +xref: galen:InferiorVenaCava +xref: http://en.wikipedia.org/wiki/Inferior_vena_cava +xref: http://linkedlifedata.com/resource/umls/id/C0042458 +xref: http://www.snomedbrowser.com/Codes/Details/181369003 +xref: MA:0000480 +xref: MESH:D014682 +xref: NCIT:C12815 +xref: UMLS:C0042458 {source="ncithesaurus:Inferior_Vena_Cava"} +xref: VHOG:0001194 +xref: XAO:0000388 +is_a: UBERON:0004087 ! vena cava +intersection_of: UBERON:0004087 ! vena cava +intersection_of: drains UBERON:0000154 ! posterior region of body +disjoint_from: UBERON:0001585 {source="lexical"} ! anterior vena cava +relationship: drains UBERON:0000154 ! posterior region of body + +[Term] +id: UBERON:0001073 +name: ileocecal junction +def: "A point along the course of the gastrointestinal tract where the small intestine (ileum) ends as it opens into the cecal portion of the large intestine; occurs usually within the iliac fossa, demarcated internally as the ileocecal orifice" [http://www.medilexicon.com/medicaldictionary.php?t=46539] +synonym: "ileocaecal junction" EXACT [] +xref: EMAPA:37601 {source="MA:th"} +xref: FMA:11338 +xref: http://www.snomedbrowser.com/Codes/Details/264021000 +xref: MA:0000332 +is_a: UBERON:8410024 ! intestinal junction +intersection_of: UBERON:0007651 ! anatomical junction +intersection_of: connects UBERON:0000059 ! large intestine +intersection_of: connects UBERON:0002108 ! small intestine +relationship: connects UBERON:0000059 ! large intestine +relationship: connects UBERON:0002108 ! small intestine + +[Term] +id: UBERON:0001074 +name: pericardial cavity +def: "A potential space between the visceral and parietal layers of the pericardium." [http://en.wikipedia.org/wiki/Pericardium] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "cavitas pericardiaca" RELATED LATIN [http://en.wikipedia.org/wiki/Pericardial_cavity] +synonym: "cavity of pericardial sac" EXACT [] +synonym: "pericardial space" EXACT [http://en.wikipedia.org/wiki/Pericardial_cavity] +xref: BSA:0000091 +xref: EHDAA2:0001434 +xref: EMAPA:16131 +xref: EMAPA:16132 +xref: FMA:11350 +xref: galen:PericardialSpace +xref: http://linkedlifedata.com/resource/umls/id/C0225972 +xref: http://www.snomedbrowser.com/Codes/Details/362027001 +xref: MA:0000053 +xref: NCIT:C38662 +xref: Pericardial:cavity +xref: TAO:0002220 +xref: UMLS:C0225972 {source="ncithesaurus:Pericardial_Cavity"} +xref: VHOG:0000556 +xref: ZFA:0001655 +is_a: UBERON:0002323 {source="MA"} ! coelemic cavity lumen +is_a: UBERON:0035809 ! serous cavity +intersection_of: UBERON:0002553 ! anatomical cavity +intersection_of: luminal_space_of UBERON:0002406 ! pericardial sac +relationship: contains UBERON:0002409 ! pericardial fluid +relationship: develops_from UBERON:0003887 {source="Wikipedia"} ! intraembryonic coelom +relationship: luminal_space_of UBERON:0002406 ! pericardial sac +relationship: part_of UBERON:0002406 {source="FMA"} ! pericardial sac +relationship: present_in_taxon NCBITaxon:7718 {source="http://www.ncbi.nlm.nih.gov/pubmed/20959416"} +relationship: surrounded_by UBERON:0002357 ! serous pericardium + +[Term] +id: UBERON:0001075 +name: bony vertebral centrum +def: "Ossified form of a vertebral centrum, a skeletal element that functionally replaces the notochord[VSAP,modified]." [http://orcid.org/0000-0002-6601-2165, VSAO:0000183, VSAO:curator] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "arcocentrum" NARROW INCONSISTENT [http://www.ncbi.nlm.nih.gov/pubmed/11746457] +synonym: "autocentrum" NARROW [http://www.ncbi.nlm.nih.gov/pubmed/11746457, ZFA:0000126] +synonym: "body of vertebra" EXACT [FMA:11945] +synonym: "centra" RELATED PLURAL [PHENOSCAPE:ad] +synonym: "corpus vertebra" EXACT LATIN [] +synonym: "corpus vertebrae" RELATED PLURAL [http://en.wikipedia.org/wiki/Body_of_vertebra] +synonym: "corpus vertebrae (vertebrale)" EXACT [FMA:11945] +synonym: "holocentrum" NARROW [http://www.ncbi.nlm.nih.gov/pubmed/11746457] +synonym: "vertebral body" EXACT [FMA:11945] +synonym: "vertebral centra" RELATED PLURAL [PHENOSCAPE:ad] +synonym: "vertebral centrum" RELATED [MA:0001457] +xref: AAO:0000697 +xref: EMAPA:36588 +xref: FMA:11945 +xref: http://en.wikipedia.org/wiki/Body_of_vertebra +xref: http://linkedlifedata.com/resource/umls/id/C0223084 +xref: http://www.snomedbrowser.com/Codes/Details/361745008 +xref: http://www.snomedbrowser.com/Codes/Details/362867001 +xref: MA:0001457 +xref: NCIT:C12852 +xref: OpenCyc:Mx4rvXU4VpwpEbGdrcN5Y29ycA +xref: TAO:0000126 +xref: UMLS:C0223084 {source="ncithesaurus:Vertebral_Body"} +xref: ZFA:0000126 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0016491 ! vertebral centrum element +intersection_of: UBERON:0016491 ! vertebral centrum element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: part_of UBERON:0002412 ! vertebra + +[Term] +id: UBERON:0001076 +name: neural spine +def: "A extension of a neural arches dorsal to the neural canal[TAO,modified]." [http://orcid.org/0000-0002-6601-2165, TAO:0001336] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "neuracanthe@fr" EXACT [TAO:0001336] +synonym: "neural spine" RELATED [] +synonym: "neural spines" RELATED PLURAL [ZFA:0001336] +synonym: "processus spinosus" EXACT [] +synonym: "processus spinosus vertebrae" EXACT [] +synonym: "spine of verterba" RELATED [FMA:11948] +synonym: "spinous process" BROAD [] +synonym: "spinous process of vertebra" EXACT HUMAN_PREFERRED [FMA:11948] +synonym: "vertebra spinous process" EXACT [MA:0001455] +synonym: "épine neurale@fr" EXACT [TAO:0001336] +xref: AAO:0000705 +xref: EMAPA:25107 +xref: FMA:11948 +xref: http://www.snomedbrowser.com/Codes/Details/264259004 +xref: MA:0001455 +xref: NCIT:C116112 +xref: Spinous:process +xref: TAO:0001336 +xref: ZFA:0001336 +is_a: UBERON:0006061 ! process of vertebra +relationship: part_of UBERON:0003861 ! neural arch + +[Term] +id: UBERON:0001077 +name: transverse process of vertebra +def: "The transverse or costal processes of a vertebra, two in number, project one at either side from the point where the lamina joins the pedicle, between the superior and inferior articular processes. They serve for the attachment of muscles and ligaments. [WP,unvetted]." [http://en.wikipedia.org/wiki/Transverse_process] +subset: pheno_slim +subset: uberon_slim +synonym: "diapophyses" RELATED [] +synonym: "diapophysis" RELATED [] +synonym: "processus transversus" EXACT [] +synonym: "processus transversus vertebrae" EXACT [] +synonym: "transverse process" EXACT [] +synonym: "vertebra transverse process" EXACT [] +xref: AAO:0000698 +xref: FMA:11949 +xref: http://www.snomedbrowser.com/Codes/Details/264238006 +xref: MA:0001456 +xref: Transverse:process +xref: XAO:0003102 +is_a: UBERON:0006061 ! process of vertebra + +[Term] +id: UBERON:0001078 +name: pedicle of vertebra +def: "the two short, thick processes, which project backward, one on either side, from the upper part of the body to the laminae" [ISBN:0-683-40008-8, MGI:csmith, MP:0004604] +subset: pheno_slim +subset: uberon_slim +synonym: "pedicle" BROAD [] +synonym: "pedicle of vertebral arch" EXACT [FMA:11950] +synonym: "pediculus arcus vertebrae" EXACT LATIN [FMA:TA] +synonym: "pediculus arcus vertebrae" RELATED LATIN [http://en.wikipedia.org/wiki/Pedicle_of_vertebral_arch] +synonym: "radix arcus vertebrae" RELATED LATIN [http://en.wikipedia.org/wiki/Pedicle_of_vertebral_arch] +synonym: "vertebra pedicle" EXACT [] +synonym: "vertebral pedicle" EXACT [FMA:11950] +xref: FMA:11950 +xref: http://en.wikipedia.org/wiki/Pedicle_of_vertebral_arch +xref: http://linkedlifedata.com/resource/umls/id/C0223080 +xref: http://www.snomedbrowser.com/Codes/Details/277422007 +xref: MA:0001458 +xref: NCIT:C96274 +xref: OpenCyc:Mx4rvYdjdJwpEbGdrcN5Y29ycA +xref: UMLS:C0223080 {source="ncithesaurus:Pedicle_of_Vertebral_Arch"} +is_a: UBERON:0006061 ! process of vertebra +relationship: part_of UBERON:0003861 ! neural arch + +[Term] +id: UBERON:0001079 +name: prezygapophysis +def: "Paired processes at the cephalic end of the neural arch. The articular facets of the prezygapophyses face dorsomedially and articulate with the lateroventrally facing facets of the postzygapophyses of the preceding vertebra." [AAO:Pugener_and_Maglia_2008] +subset: vertebrate_core +synonym: "cranial articular process of vertebra" EXACT [] +synonym: "neural prezygapophyses" RELATED PLURAL [TAO:0001325] +synonym: "neural prezygapophysis" NARROW DUBIOUS [ZFA:0001325] +synonym: "neural prezygopophyses" NARROW DUBIOUS [ZFA:0001325] +synonym: "prezygapophysis" EXACT [] +synonym: "processus articularis superior" EXACT [] +synonym: "processus articularis superior vertebrae" EXACT LATIN [FMA:11953, FMA:TA] +synonym: "superior articular process of vertebra" EXACT HUMAN_PREFERRED [FMA:11953] +synonym: "vertebra cranial articular process" EXACT [] +synonym: "zygapophysis superior" EXACT LATIN [FMA:11953, FMA:TA] +xref: AAO:0000703 +xref: EMAPA:37802 {source="MA:th"} +xref: FMA:11953 +xref: http://www.informatics.jax.org/cookbook/figures/figure20.shtml +xref: http://www.snomedbrowser.com/Codes/Details/42424006 +xref: MA:0001452 +xref: TAO:0001325 +xref: ZFA:0001325 +is_a: UBERON:0006062 ! zygapophysis + +[Term] +id: UBERON:0001080 +name: postzygapophysis +alt_id: UBERON:4300122 +def: "Paired processes at the caudal end of the neural arch. The articular facets of the postzygapophyses face lateroventrally and articulate with the dorsomedially facing facets of the prezygapophyses of the succeeding vertebra." [AAO:LAP] +comment: Posteriorly projecting processes allowing de facto contact between consecutive vertebrae (some soft tissues are also present) via articular facets. [PHENOSCAPE:NI] +subset: pheno_slim +subset: vertebrate_core +synonym: "caudal articular process of vertebra" EXACT [] +synonym: "inferior articular process of vertebra" EXACT HUMAN_PREFERRED [FMA:11954] +synonym: "neural postzygapophyses" RELATED PLURAL [TAO:0000681] +synonym: "neural postzygapophysis" NARROW DUBIOUS [ZFA:0000681] +synonym: "neural postzygopophyses" RELATED [TAO:0000681] +synonym: "neural postzygopophysis" EXACT [ZFA:0000681] +synonym: "postzygapophysis" EXACT [] +synonym: "processus articularis inferior" EXACT [] +synonym: "processus articularis inferior vertebrae" EXACT LATIN [FMA:11954, FMA:TA] +synonym: "processus obliquus posterior" RELATED [AAO:0000702] +synonym: "vertebra caudal articular process" EXACT [] +synonym: "zygapophysis inferior" EXACT LATIN [FMA:11954, FMA:TA] +xref: AAO:0000702 +xref: EMAPA:35918 +xref: FMA:11954 +xref: http://www.snomedbrowser.com/Codes/Details/30079000 +xref: MA:0001451 +xref: TAO:0000681 +xref: ZFA:0000681 +is_a: UBERON:0006062 ! zygapophysis + +[Term] +id: UBERON:0001081 +name: endocardium of ventricle +def: "Endocardium that is part of the cardiac ventricle." [ZFIN:curator] +subset: pheno_slim +subset: vertebrate_core +synonym: "cardiac ventricle endocardium" EXACT [OBOL:automatic] +synonym: "endocardium of cardiac ventricle" EXACT [OBOL:automatic] +synonym: "endocardium of heart ventricle" EXACT [OBOL:automatic] +synonym: "endocardium of lower chamber of heart" EXACT [OBOL:automatic] +synonym: "endocardium of ventricle of heart" EXACT [OBOL:automatic] +synonym: "heart ventricle endocardium" EXACT [OBOL:automatic] +synonym: "lower chamber of heart endocardium" EXACT [OBOL:automatic] +synonym: "ventricle endocardial tissue" RELATED [VHOG:0000607] +synonym: "ventricle endocardium" EXACT [] +synonym: "ventricle of heart endocardium" EXACT [OBOL:automatic] +synonym: "ventricular endocardium" EXACT [] +xref: EMAPA:32747 +xref: FMA:12148 +xref: http://www.snomedbrowser.com/Codes/Details/192172004 +xref: MA:0000079 +xref: TAO:0002247 +xref: VHOG:0000607 +xref: ZFA:0001615 +is_a: UBERON:0000487 ! simple squamous epithelium +is_a: UBERON:0002165 ! endocardium +is_a: UBERON:0012275 ! meso-epithelium +intersection_of: UBERON:0002165 ! endocardium +intersection_of: part_of UBERON:0002082 ! cardiac ventricle +relationship: contributes_to_morphology_of UBERON:0002082 ! cardiac ventricle +relationship: part_of UBERON:0004784 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! heart ventricle wall + +[Term] +id: UBERON:0001082 +name: epicardium of ventricle +def: "An epicardial layer that lines a cardiac ventricle" [http://orcid.org/0000-0002-6601-2165] +subset: vertebrate_core +synonym: "cardiac ventricle epicardium" EXACT [OBOL:automatic] +synonym: "ventricular epicardium" EXACT [] +xref: FMA:12150 +xref: TAO:0005058 +xref: ZFA:0005058 +is_a: UBERON:0002348 ! epicardium +intersection_of: UBERON:0002348 ! epicardium +intersection_of: part_of UBERON:0002082 ! cardiac ventricle +relationship: part_of UBERON:0002082 ! cardiac ventricle + +[Term] +id: UBERON:0001083 +name: myocardium of ventricle +def: "Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer." [ZFIN:curator] +subset: efo_slim +subset: pheno_slim +subset: vertebrate_core +synonym: "ventricle cardiac muscle" RELATED [VHOG:0000604] +synonym: "ventricle myocardium" EXACT [] +synonym: "ventricular myocardium" EXACT [] +xref: EFO:0003088 +xref: EMAPA:32748 +xref: FMA:12151 +xref: http://www.snomedbrowser.com/Codes/Details/192084000 +xref: MA:0000082 +xref: TAO:0005061 +xref: VHOG:0000604 +xref: ZFA:0005061 +is_a: UBERON:0002349 ! myocardium +intersection_of: UBERON:0002349 ! myocardium +intersection_of: part_of UBERON:0002082 ! cardiac ventricle +relationship: contributes_to_morphology_of UBERON:0002082 ! cardiac ventricle +relationship: part_of UBERON:0004784 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! heart ventricle wall + +[Term] +id: UBERON:0001084 +name: skin of head +def: "A zone of skin that is part of a head [Automatically generated definition]." [OBOL:automatic] +synonym: "adult head zone of skin" EXACT [OBOL:automatic] +synonym: "head skin" EXACT [] +synonym: "head zone of skin" EXACT [OBOL:automatic] +synonym: "zone of skin of adult head" EXACT [OBOL:automatic] +synonym: "zone of skin of head" EXACT [OBOL:automatic] +xref: FMA:12166 +xref: FMA:24756 +xref: http://linkedlifedata.com/resource/umls/id/C0205029 +xref: http://www.snomedbrowser.com/Codes/Details/181484006 +xref: MA:0000582 +xref: NCIT:C52757 +xref: UMLS:C0205029 {source="ncithesaurus:Head_Skin"} +is_a: UBERON:0012180 ! head or neck skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0000033 ! head +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0001085 +name: skin of trunk +def: "A zone of skin that is part of a trunk [Automatically generated definition]." [OBOL:automatic] +synonym: "torso zone of skin" EXACT [OBOL:automatic] +synonym: "trunk skin" EXACT [] +synonym: "trunk zone of skin" EXACT [OBOL:automatic] +synonym: "zone of skin of torso" EXACT [OBOL:automatic] +synonym: "zone of skin of trunk" EXACT [OBOL:automatic] +xref: EMAPA:37278 {source="MA:th"} +xref: FMA:12167 +xref: FMA:23093 +xref: http://linkedlifedata.com/resource/umls/id/C0205031 +xref: http://www.snomedbrowser.com/Codes/Details/181489001 +xref: MA:0000517 +xref: NCIT:C12295 +xref: UMLS:C0205031 {source="ncithesaurus:Skin_of_the_Trunk"} +is_a: UBERON:0000014 ! zone of skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0002100 ! trunk +relationship: part_of UBERON:0002100 ! trunk + +[Term] +id: UBERON:0001086 +name: obsolete articular cartilage +comment: obsoleted as it conflated two distinct classes +is_obsolete: true +consider: UBERON:0010996 +consider: UBERON:0011002 + +[Term] +id: UBERON:0001087 +name: pleural fluid +def: "Transudate contained in the pleural cavity." [FMA:12273] +subset: uberon_slim +xref: BTO:0003080 +xref: FMA:12273 +xref: MA:0002532 +xref: MAT:0000500 +xref: ncithesaurus:Pleural_Fluid +xref: Pleural:fluid +is_a: UBERON:0036244 ! secretion of serous membrane +intersection_of: UBERON:0007779 ! transudate +intersection_of: located_in UBERON:0002402 ! pleural cavity +relationship: located_in UBERON:0002402 ! pleural cavity + +[Term] +id: UBERON:0001088 +name: urine +def: "Excretion that is the output of a kidney" [http://en.wikipedia.org/wiki/Urine, https://github.com/geneontology/go-ontology/issues/11025] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +xref: BTO:0001419 +xref: CALOHA:TS-1092 +xref: EFO:0001939 +xref: EMAPA:36554 +xref: ENVO:00002047 +xref: FMA:12274 +xref: GAID:1189 +xref: galen:Urine +xref: http://en.wikipedia.org/wiki/Urine +xref: http://linkedlifedata.com/resource/umls/id/C0042036 +xref: MA:0002545 +xref: MAT:0000058 +xref: MESH:D014556 +xref: MIAA:0000058 +xref: NCIT:C13283 +xref: OpenCyc:Mx4rvVjGppwpEbGdrcN5Y29ycA +xref: UMLS:C0042036 {source="ncithesaurus:Urine"} +is_a: UBERON:0000174 ! excreta +intersection_of: UBERON:0000174 ! excreta +intersection_of: produced_by UBERON:0002113 ! kidney +relationship: produced_by UBERON:0002113 ! kidney + +[Term] +id: UBERON:0001089 +name: sweat +def: "Secretion produced by a sweat gland." [FMA:12275] +subset: pheno_slim +subset: uberon_slim +synonym: "skin exudate" RELATED [BTO:0001254] +xref: BTO:0001254 +xref: ENVO:02000025 +xref: FMA:12275 +xref: GAID:1172 +xref: http://en.wikipedia.org/wiki/Sweat +xref: http://linkedlifedata.com/resource/umls/id/C0038984 +xref: MA:0002539 +xref: MESH:D013542 +xref: NCIT:C13280 +xref: OpenCyc:Mx4rvVjJtZwpEbGdrcN5Y29ycA +xref: UMLS:C0038984 {source="ncithesaurus:Sweat"} +is_a: UBERON:0000456 ! secretion of exocrine gland +is_a: UBERON:0006314 ! bodily fluid +intersection_of: UBERON:0000456 ! secretion of exocrine gland +intersection_of: produced_by UBERON:0001820 ! sweat gland +relationship: produced_by UBERON:0001820 ! sweat gland + +[Term] +id: UBERON:0001090 +name: synovial fluid +def: "Joint fluid is a transudate of plasma that is actively secreted by synovial cells." [https://www.ncbi.nlm.nih.gov/books/NBK274/] +subset: uberon_slim +subset: vertebrate_core +synonym: "joint fluid" EXACT [https://www.ncbi.nlm.nih.gov/books/NBK274/] +xref: BTO:0001339 +xref: CALOHA:TS-0996 +xref: ENVO:02000039 +xref: FMA:12277 +xref: GAID:265 +xref: galen:SynovialFluid +xref: http://linkedlifedata.com/resource/umls/id/C0039097 +xref: MA:0002544 +xref: MESH:D013582 +xref: NCIT:C33718 +xref: Synovial:fluid +xref: TAO:0005154 +xref: UMLS:C0039097 {source="ncithesaurus:Synovial_Fluid"} +xref: ZFA:0005154 +is_a: UBERON:0007779 ! transudate +is_a: UBERON:0007794 {source="FMA"} ! secretion of serous gland +relationship: located_in UBERON:0007617 ! synovial cavity of joint + +[Term] +id: UBERON:0001091 +name: calcareous tooth +def: "Skeletal element within the mouth (or in some species, upper part of the digestive tract) that is composed of dentine and is used in procuring or masticating food." [http://en.wikipedia.org/wiki/Tooth_(animal), http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "dental element" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "dentine containing tooth" EXACT [] +synonym: "tooth" EXACT [] +synonym: "vertebrate tooth" EXACT [] +xref: AEO:0000220 +xref: BTO:0000397 +xref: CALOHA:TS-1055 +xref: EFO:0000839 +xref: EHDAA2:0004605 +xref: EMAPA:32906 +xref: EV:0100063 +xref: FMA:12516 +xref: GAID:1260 +xref: http://en.wikipedia.org/wiki/Tooth +xref: http://linkedlifedata.com/resource/umls/id/C0040426 +xref: http://www.snomedbrowser.com/Codes/Details/302214001 +xref: MA:0000348 +xref: MAT:0000041 +xref: MESH:A14.254.860 +xref: MIAA:0000041 +xref: NCIT:C12506 +xref: OpenCyc:Mx4rvVjUEZwpEbGdrcN5Y29ycA +xref: TAO:0001625 +xref: UMLS:C0040426 {source="ncithesaurus:Tooth"} +xref: VHOG:0001733 +xref: XAO:0000431 +xref: ZFA:0000694 +is_a: UBERON:0003913 ! tooth-like structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0008281 ! tooth bud +relationship: has_developmental_contribution_from UBERON:0000930 {source="XAO-modified"} ! stomodeum +relationship: has_developmental_contribution_from UBERON:0005176 {source="ZFA-modified"} ! tooth enamel organ +relationship: has_part UBERON:0001751 ! dentine +relationship: immediate_transformation_of UBERON:0008281 {source="cjm"} ! tooth bud + +[Term] +id: UBERON:0001092 +name: vertebral bone 1 +def: "The first vertebral bone in the vertebral column." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "atlas" EXACT [] +synonym: "atlas (CI)" EXACT [] +synonym: "atlas [C I]" EXACT LATIN [FMA:12519, FMA:TA] +synonym: "atlas vertebra" EXACT [] +synonym: "C1" BROAD [] +synonym: "C1 vertebra" EXACT [] +synonym: "cervical atlas" EXACT [MP:0011576] +synonym: "cervical vertebra 1" EXACT HUMAN_PREFERRED [MA:0001421] +synonym: "first cervical vertebra" EXACT [] +synonym: "vertebra 1" EXACT [TAO:0001167] +xref: AAO:0000709 +xref: Atlas:(anatomy) +xref: EHDAA:10606 +xref: EMAPA:19431 +xref: FMA:12519 +xref: GAID:236 +xref: http://linkedlifedata.com/resource/umls/id/C0004170 +xref: http://www.snomedbrowser.com/Codes/Details/181818007 +xref: MA:0001421 +xref: MESH:A02.835.232.834.151.213 +xref: NCIT:C32239 +xref: TAO:0001167 +xref: UMLS:C0004170 {source="ncithesaurus:C1_Vertebra"} +xref: ZFA:0001167 +is_a: UBERON:0002412 ! vertebra +relationship: anterior_to UBERON:0001093 ! vertebral bone 2 + +[Term] +id: UBERON:0001093 +name: vertebral bone 2 +def: "The second vertebral bone in the vertebral column." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "axis" RELATED INCONSISTENT [MA:0001422] +synonym: "axis (CII)" EXACT [] +synonym: "axis [C II]" EXACT LATIN [FMA:12520, FMA:TA] +synonym: "axis vertebra" EXACT [] +synonym: "C2" RELATED [] +synonym: "C2 vertebra" NARROW [] +synonym: "cervical axis" EXACT [MP:0004608] +synonym: "cervical vertebra 2" NARROW HUMAN_PREFERRED [MA:0001422] +synonym: "second cervical vertebra" NARROW [] +synonym: "vertebra 2" EXACT [ZFA:0001168] +xref: Axis:(anatomy) +xref: EHDAA:10608 +xref: EMAPA:19432 +xref: FMA:12520 +xref: GAID:237 +xref: http://linkedlifedata.com/resource/umls/id/C0004457 +xref: http://www.snomedbrowser.com/Codes/Details/181819004 +xref: MA:0001422 +xref: MESH:D001368 +xref: NCIT:C32240 +xref: OpenCyc:Mx4rv-zaJJwpEbGdrcN5Y29ycA +xref: TAO:0001168 +xref: UMLS:C0004457 {source="ncithesaurus:C2_Vertebra"} +xref: ZFA:0001168 +is_a: UBERON:0002412 ! vertebra +relationship: anteriorly_connected_to UBERON:0001092 {source="FMA"} ! vertebral bone 1 + +[Term] +id: UBERON:0001094 +name: sacral vertebra +def: "A vertebra bone that is part of the sacral region of the vertebral column." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "sacral segment" EXACT [] +synonym: "segment of sacrum" EXACT [] +xref: AAO:0000552 +xref: EMAPA:18336 +xref: FMA:12526 +xref: galen:SacralVertebra +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1706 +xref: http://en.wikipedia.org/wiki/Sacrum +xref: http://linkedlifedata.com/resource/umls/id/C1261045 +xref: http://www.snomedbrowser.com/Codes/Details/361773005 +xref: MA:0000313 +xref: NCIT:C12853 +xref: OpenCyc:Mx4rv-ZsXpwpEbGdrcN5Y29ycA +xref: UMLS:C1261045 {source="ncithesaurus:Sacral_Vertebra"} +xref: XAO:0003078 +is_a: UBERON:0002412 ! vertebra +is_a: UBERON:0003828 ! abdominal segment bone +is_a: UBERON:0004247 ! bone of dorsum +is_a: UBERON:0015010 ! sacral vertebra endochondral element +intersection_of: UBERON:0015010 ! sacral vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010745 ! sacral vertebra cartilage element + +[Term] +id: UBERON:0001095 +name: caudal vertebra +alt_id: UBERON:0006070 +def: "Any vertebral bone that is part of the caudal region of the vertebral column (tail or coccyx)." [http://orcid.org/0000-0002-6601-2165] +comment: Taxon notes In zebrafish, Vertebra bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "caudal vertebra" BROAD SENSU [FMA:12527] +synonym: "caudal vertebrae" EXACT PLURAL [] +synonym: "caudal vertebral bone" EXACT [] +synonym: "caudal vertebral bone element" EXACT [] +synonym: "coccygea" RELATED [MA:0001420] +synonym: "coccygeal segment" EXACT [] +synonym: "coccygeal vertebra" EXACT [FMA:12527] +synonym: "fused tail vertebra" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "tail vertebra" RELATED [MA:0000310] +xref: Caudal:vertebra +xref: EMAPA:18374 +xref: FMA:12527 +xref: galen:CoccygealVertebra +xref: http://linkedlifedata.com/resource/umls/id/C0223616 +xref: http://www.snomedbrowser.com/Codes/Details/361774004 +xref: MA:0000310 +xref: MA:0001420 +xref: NCIT:C32334 +xref: OpenCyc:Mx4rv9IEzZwpEbGdrcN5Y29ycA +xref: TAO:0000326 +xref: UMLS:C0223616 {source="ncithesaurus:Coccygeal_Vertebra"} +xref: XAO:0003079 +xref: ZFA:0000326 +is_a: UBERON:0002412 ! vertebra +is_a: UBERON:0004247 ! bone of dorsum +is_a: UBERON:0018142 ! caudal vertebra endochondral element +intersection_of: UBERON:0018142 ! caudal vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue + +[Term] +id: UBERON:0001096 +name: wall of esophagus +def: "An anatomical wall that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] +synonym: "anatomical wall of esophagus" EXACT [OBOL:automatic] +synonym: "anatomical wall of gullet" EXACT [OBOL:automatic] +synonym: "anatomical wall of oesophagus" EXACT [OBOL:automatic] +synonym: "esophageal wall" EXACT [] +synonym: "esophagus anatomical wall" EXACT [OBOL:automatic] +synonym: "esophagus wall" EXACT [] +synonym: "gullet anatomical wall" EXACT [OBOL:automatic] +synonym: "gullet wall" EXACT [OBOL:automatic] +synonym: "oesophagus anatomical wall" EXACT [OBOL:automatic] +synonym: "oesophagus wall" EXACT [OBOL:automatic] +synonym: "wall of gullet" EXACT [OBOL:automatic] +synonym: "wall of oesophagus" EXACT [OBOL:automatic] +xref: EMAPA:35326 +xref: FMA:12611 +xref: MA:0002691 +is_a: UBERON:0000328 ! gut wall +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0001043 ! esophagus +relationship: part_of UBERON:0001043 ! esophagus + +[Term] +id: UBERON:0001097 +name: axillary lymph node +def: "the lymph nodes located around the axillary vein that receive lymphatic drainage from the upper or forelimb, scapular region and pectoral region" [ISBN:0-683-40008-8, MP:0002340] +subset: pheno_slim +subset: uberon_slim +synonym: "axillary node" EXACT [] +synonym: "nodi lymphoidei axillares" RELATED LATIN [http://en.wikipedia.org/wiki/Axillary_lymph_nodes] +xref: FMA:276805 +xref: http://en.wikipedia.org/wiki/Axillary_lymph_nodes +xref: http://linkedlifedata.com/resource/umls/id/C0729594 +xref: http://www.snomedbrowser.com/Codes/Details/181759007 +xref: MA:0000735 +xref: NCIT:C12904 +xref: UMLS:C0729594 {source="ncithesaurus:Axillary_Lymph_Node"} +is_a: UBERON:0003968 {source="CL:tm"} ! peripheral lymph node +relationship: part_of UBERON:0001467 ! shoulder + +[Term] +id: UBERON:0001098 +name: incisor tooth +def: "Incisors are the first kind of tooth in heterodont mammals. They are located in the premaxilla above and mandible below. [WP,unvetted]." [http://en.wikipedia.org/wiki/Incisor_tooth, https://github.com/obophenotype/uberon/issues/221] +comment: Humans normally have eight (8) incisors; Among other animals, some other primates, cats and horses have twelve. Rodents have four, while Foxes have nine. Rabbits and hares (lagomorphs) were once considered rodents, but are distinguished by having eight - one small pair, called 'peg teeth', is located directly behind the most anterior pair. Incisors are used to bite off tough foods, such as red meat +subset: pheno_slim +subset: uberon_slim +synonym: "incisor" EXACT [MA:0000349] +xref: BTO:0001741 +xref: EHDAA:8011 +xref: EHDAA:8047 +xref: EMAPA:32889 +xref: FMA:12823 +xref: GAID:1263 +xref: http://linkedlifedata.com/resource/umls/id/C0021156 +xref: http://www.snomedbrowser.com/Codes/Details/420856006 +xref: Incisor:tooth +xref: MA:0000349 +xref: MESH:A14.254.860.425 +xref: NCIT:C32769 +xref: OpenCyc:Mx4rwP1ch5wpEbGdrcN5Y29ycA +xref: UMLS:C0021156 {source="ncithesaurus:Incisor"} +is_a: UBERON:0001091 ! calcareous tooth +disjoint_from: UBERON:0003655 ! molar tooth +disjoint_from: UBERON:0003674 ! cuspid +disjoint_from: UBERON:0007120 ! premolar tooth +relationship: part_of UBERON:0003672 ! dentition + +[Term] +id: UBERON:0001099 +name: subcostal vein +def: "A vein that runs along the bottom of the lowest rib. Each subcostal vein gives off a posterior (dorsal) branch which has a similar distribution to the posterior ramus of an intercostal artery. [WP,modified]." [http://en.wikipedia.org/wiki/Subcostal_vein] +subset: uberon_slim +synonym: "vena subcostalis" RELATED LATIN [http://en.wikipedia.org/wiki/Subcostal_vein] +xref: EMAPA:37189 {source="MA:th"} +xref: FMA:12845 +xref: http://linkedlifedata.com/resource/umls/id/C0226653 +xref: http://www.snomedbrowser.com/Codes/Details/25248001 +xref: MA:0002222 +xref: NCIT:C53121 +xref: Subcostal:vein +xref: UMLS:C0226653 {source="ncithesaurus:Subcostal_Vein"} +is_a: UBERON:0001638 ! vein +relationship: posterior_to UBERON:0014478 ! rib skeletal system + +[Term] +id: UBERON:0001100 +name: pectoralis minor +def: "The Pectoralis minor is a thin, triangular muscle, situated at the upper part of the chest, beneath the Pectoralis major. [WP,unvetted]." [http://en.wikipedia.org/wiki/Pectoralis_minor_muscle] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "musculus pectoralis minor" RELATED LATIN [http://en.wikipedia.org/wiki/Pectoralis_minor_muscle] +synonym: "pectoralis minor muscle" EXACT [] +synonym: "supracoracoideus" NARROW SENSU [] +synonym: "supracoracoideus muscle" NARROW SENSU [] +xref: EHDAA2:0001425 +xref: EHDAA:8313 +xref: EMAPA:18180 +xref: FMA:13109 +xref: http://en.wikipedia.org/wiki/Pectoralis_minor_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224347 +xref: http://www.snomedbrowser.com/Codes/Details/181625002 +xref: MA:0002355 +xref: NCIT:C33285 +xref: UMLS:C0224347 {source="ncithesaurus:Pectoralis_Minor"} +xref: VHOG:0000902 +is_a: UBERON:0001495 {source="FMA"} ! pectoral muscle +relationship: has_muscle_insertion UBERON:0007174 {notes="medial border and superior surface of the coracoid process of the scapula", source="dbpedia"} ! medial border of scapula +relationship: has_muscle_origin UBERON:0002228 {notes="third to fifth ribs near their costal cartilages", source="dbpedia"} ! rib + +[Term] +id: UBERON:0001101 +name: external jugular vein +def: "The external jugular vein receives the greater part of the blood from the exterior of the cranium and the deep parts of the face, being formed by the junction of the posterior division of the posterior facial with the posterior auricular vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/External_jugular_vein] +subset: uberon_slim +synonym: "external jugular" RELATED [EHDAA2:0000468] +synonym: "external jugular venous tree" EXACT [] +synonym: "vena jugularis externa" RELATED LATIN [http://en.wikipedia.org/wiki/External_jugular_vein] +xref: AAO:0010508 +xref: EHDAA2:0000468 +xref: EHDAA:9887 +xref: EMAPA:17875 +xref: FMA:13110 +xref: galen:ExternalJugularVein +xref: http://en.wikipedia.org/wiki/External_jugular_vein +xref: http://linkedlifedata.com/resource/umls/id/C0226543 +xref: http://www.snomedbrowser.com/Codes/Details/181373000 +xref: MA:0002156 +xref: NCIT:C32562 +xref: OpenCyc:Mx4rvrm0c5wpEbGdrcN5Y29ycA +xref: UMLS:C0226543 {source="ncithesaurus:External_Jugular_Vein"} +xref: XAO:0000379 +is_a: UBERON:0004711 ! jugular vein +relationship: part_of UBERON:0001587 ! subclavian vein +relationship: tributary_of UBERON:0001587 {source="FMA"} ! subclavian vein + +[Term] +id: UBERON:0001102 +name: cartilage of main bronchus +def: "A cartilage that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchus principalis cartilage" EXACT [OBOL:automatic] +synonym: "cartilage of bronchus principalis" EXACT [OBOL:automatic] +synonym: "cartilage of primary bronchus" EXACT [OBOL:automatic] +synonym: "cartilage of principal bronchus" EXACT [OBOL:automatic] +synonym: "cartilaginous ring of main bronchus" EXACT [EMAPA:19092] +synonym: "main bronchial cartilage" EXACT [] +synonym: "main bronchus cartilage" EXACT [] +synonym: "primary bronchus cartilage" EXACT [OBOL:automatic] +synonym: "principal bronchus cartilage" EXACT [OBOL:automatic] +xref: EMAPA:19092 +xref: FMA:13117 +xref: MA:0001846 +is_a: UBERON:0001956 ! cartilage of bronchus +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0002182 ! main bronchus +relationship: part_of UBERON:0002182 ! main bronchus + +[Term] +id: UBERON:0001103 +name: diaphragm +def: "A thin musculomebranous barrier that separates the abdominal and thoracic cavities. Often used for breathing control" [MP:0002279] +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "diaphragm muscle" EXACT [BTO:0000341] +synonym: "diaphragm of thorax" EXACT [] +synonym: "midriff" RELATED [BTO:0000341] +synonym: "phren" RELATED [BTO:0000341] +synonym: "thoracic diaphragm" EXACT [] +xref: BTO:0000341 +xref: CALOHA:TS-0198 +xref: EFO:0000937 +xref: EHDAA2:0003495 +xref: EMAPA:17701 +xref: EV:0100376 +xref: FMA:13295 +xref: GAID:158 +xref: http://linkedlifedata.com/resource/umls/id/C0011980 +xref: http://www.snomedbrowser.com/Codes/Details/181614006 +xref: MA:0001904 +xref: MAT:0000502 +xref: MESH:D003964 +xref: NCIT:C12702 +xref: OpenCyc:Mx4rvVivz5wpEbGdrcN5Y29ycA +xref: Thoracid:diaphragm +xref: UMLS:C0011980 {source="ncithesaurus:Diaphragm"} +xref: VHOG:0000713 +is_a: UBERON:0003830 ! thoracic segment muscle +is_a: UBERON:0003831 ! respiratory system muscle +relationship: develops_from UBERON:0010084 ! future diaphragm +relationship: immediate_transformation_of UBERON:0010084 {evidence="definitional"} ! future diaphragm +relationship: innervated_by UBERON:0001884 ! phrenic nerve + +[Term] +id: UBERON:0001104 +name: anterior jugular vein +def: "The anterior jugular vein begins near the hyoid bone by the confluence of several superficial veins from the submaxillary region. It descends between the median line and the anterior border of the Sternocleidomastoideus, and, at the lower part of the neck, passes beneath that muscle to open into the termination of the external jugular, or, in some instances, into the subclavian vein. It varies considerably in size, bearing usually an inverse proportion to the external jugular; most frequently there are two anterior jugulars, a right and left; but sometimes only one. Its tributaries are some laryngeal veins, and occasionally a small thyroid vein. Just above the sternum the two anterior jugular veins communicate by a transverse trunk, the venous jugular arch, which receive tributaries from the inferior thyroid veins; each also communicates with the internal jugular. There are no valves in this vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Anterior_jugular_vein] +subset: uberon_slim +synonym: "anterior external jugular vein" EXACT [] +synonym: "vena jugularis anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_jugular_vein] +xref: EMAPA:37134 {source="MA:th"} +xref: FMA:13318 +xref: http://en.wikipedia.org/wiki/Anterior_jugular_vein +xref: http://linkedlifedata.com/resource/umls/id/C0226545 +xref: http://www.snomedbrowser.com/Codes/Details/65478008 +xref: MA:0002155 +xref: NCIT:C32094 +xref: UMLS:C0226545 {source="ncithesaurus:Anterior_Jugular_Vein"} +is_a: UBERON:0004711 ! jugular vein +disjoint_from: UBERON:0035249 {source="lexical"} ! posterior external jugular vein +relationship: part_of UBERON:0001101 ! external jugular vein +relationship: tributary_of UBERON:0001101 {source="Wikipedia"} ! external jugular vein +relationship: tributary_of UBERON:0001587 {source="FMA", source="Wikipedia"} ! subclavian vein + +[Term] +id: UBERON:0001105 +name: clavicle bone +def: "A paired dermal or endochondral bone that is part of the pectoral girdle. The clavicle may be in contact with the interclavicle or coracoid and forms an attachment site for pectoral musculature. [PHENOSCAPE:ad]." [https://github.com/obophenotype/uberon/issues/103, PHENOSCAPE:ad] +subset: pheno_slim +subset: uberon_slim +synonym: "clavicle" EXACT [VSAO:0005031] +synonym: "clavicula" EXACT [VSAO:0005031] +synonym: "collar bone" EXACT [] +synonym: "collarbone" EXACT [] +xref: AAO:0000761 +xref: EMAPA:18721 +xref: FMA:13321 +xref: GAID:182 +xref: galen:Clavicle +xref: http://en.wikipedia.org/wiki/Clavicle +xref: http://linkedlifedata.com/resource/umls/id/C0008913 +xref: http://www.snomedbrowser.com/Codes/Details/181910004 +xref: MA:0001329 +xref: MESH:D002968 +xref: MFMO:0000047 +xref: NCIT:C12695 +xref: OpenCyc:Mx4rvVjijZwpEbGdrcN5Y29ycA +xref: UMLS:C0008913 {source="ncithesaurus:Clavicle"} +xref: VHOG:0000849 +xref: VSAO:0005031 +is_a: UBERON:0002495 {source="FMA"} ! long bone +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015212 ! lateral structure +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +relationship: develops_from UBERON:0010905 {editor="mah", source="ISBN:978-0-12-319060-4"} ! clavicle bone primordium +relationship: has_developmental_contribution_from UBERON:0010843 {notes="from secondary cartilage of fusion", source="ISBN:978-0-12-319060-4"} ! clavicle cartilage element +relationship: in_lateral_side_of UBERON:0002091 ! appendicular skeleton + +[Term] +id: UBERON:0001106 +name: cephalic vein +def: "A superficial vein of the upper limb that communicates with the basilic vein via the median cubital vein at the elbow and is located in the superficial fascia along the anterolateral surface of the biceps brachii muscle. Superiorly the cephalic vein passes between the deltoid and pectoralis major muscles and through the deltopectoral triangle, where it empties into the axillary vein. It is often visible through the skin, and its location in the deltopectoral groove is fairly consistent, making this site a good candidate for cannulation. It is often referred to as the 'House-man's Friend' for this reason and is generally a good place for cannulaton when a large bore cannula needs to be sited. [WP,modified]." [http://en.wikipedia.org/wiki/Cephalic_vein] +subset: uberon_slim +synonym: "cephalic vein of forearm" EXACT [] +synonym: "vena cephalica" RELATED LATIN [http://en.wikipedia.org/wiki/Cephalic_vein] +synonym: "vena cephalica antebrachii" EXACT LATIN [FMA:13324, FMA:TA] +xref: Cephalic:vein +xref: EMAPA:25075 +xref: FMA:13324 +xref: galen:CephalicVein +xref: http://linkedlifedata.com/resource/umls/id/C0226802 +xref: http://www.snomedbrowser.com/Codes/Details/181391005 +xref: MA:0002092 +xref: NCIT:C32286 +xref: OpenCyc:Mx4rwTpbQZwpEbGdrcN5Y29ycA +xref: UMLS:C0226802 {source="ncithesaurus:Cephalic_Vein"} +is_a: UBERON:0003507 ! arm blood vessel +is_a: UBERON:0035550 ! superficial vein +relationship: part_of UBERON:0000985 ! axillary vein +relationship: part_of UBERON:0001587 ! subclavian vein +relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein +relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein + +[Term] +id: UBERON:0001107 +name: sternohyoid muscle +def: "The sternohyoid muscle is a thin, narrow muscle attaching the hyoid bone to the sternum, one of the paired strap muscles of the infrahyoid muscles serving to depress the hyoid bone. It is innervated by the ansa cervicalis. The muscle arises from the posterior border of the medial end of the clavicle, the posterior sternoclavicular ligament, and the upper and posterior part of the manubrium sterni. Passing upward and medially, it is inserted by short tendinous fibers into the lower border of the body of the hyoid bone. [WP,unvetted]." [http://en.wikipedia.org/wiki/Sternohyoid_muscle] +subset: uberon_slim +subset: vertebrate_core +synonym: "m. sternohyoideus" EXACT [] +synonym: "musculus sternohyoideus" RELATED LATIN [http://en.wikipedia.org/wiki/Sternohyoid_muscle] +synonym: "sternohyoid" EXACT [http://en.wikipedia.org/wiki/Sternohyoid_muscle] +synonym: "sternohyoidei" RELATED PLURAL [http://en.wikipedia.org/wiki/Sternohyoid_muscle] +synonym: "sternohyoideus" EXACT [http://en.wikipedia.org/wiki/Sternohyoid_muscle] +synonym: "sternohyoideus muscle" EXACT [http://en.wikipedia.org/wiki/Sternohyoid_muscle] +xref: EMAPA:19271 +xref: FMA:13341 +xref: http://linkedlifedata.com/resource/umls/id/C0224162 +xref: http://www.snomedbrowser.com/Codes/Details/244830003 +xref: MA:0002383 +xref: NCIT:C53044 +xref: Sternohyoid:muscle +xref: UMLS:C0224162 {source="ncithesaurus:Sternohyoid"} +is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle +relationship: has_muscle_insertion UBERON:0001685 {source="dbpedia"} ! hyoid bone +relationship: has_muscle_origin UBERON:0002205 {notes="manubrium of sternum", source="dbpedia"} ! manubrium of sternum +relationship: innervated_by UBERON:0001780 {notes="inferred", source="dbpedia"} ! spinal nerve + +[Term] +id: UBERON:0001108 +name: omohyoid muscle +def: "The omohyoid muscle is a muscle at the front of the neck that consists of two bellies separated by an intermediate tendon. It belongs to the group of infrahyoid muscles. [WP,unvetted]." [http://en.wikipedia.org/wiki/Omohyoid_muscle] +comment: interior and superior belly +subset: uberon_slim +synonym: "musculus omohyoideus" RELATED LATIN [http://en.wikipedia.org/wiki/Omohyoid_muscle] +synonym: "omohyoid" EXACT [] +synonym: "omohyoideus" EXACT [http://en.wikipedia.org/wiki/Omohyoid_muscle] +synonym: "omohyoideus muscle" EXACT [http://en.wikipedia.org/wiki/Omohyoid_muscle] +xref: EMAPA:37689 {source="MA:th"} +xref: FMA:13342 +xref: http://linkedlifedata.com/resource/umls/id/C0224163 +xref: http://www.snomedbrowser.com/Codes/Details/244833001 +xref: MA:0002348 +xref: NCIT:C52971 +xref: Omohyoid:muscle +xref: UMLS:C0224163 {source="ncithesaurus:Omohyoid"} +is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle +relationship: has_muscle_insertion UBERON:0001685 {source="dbpedia"} ! hyoid bone +relationship: innervated_by UBERON:0001780 {notes="inferred", source="dbpedia"} ! spinal nerve + +[Term] +id: UBERON:0001109 +name: sternothyroid muscle +def: "The Sternothyreoideus (or Sternothyroid muscle) is shorter and wider than the Sternohyoideus, beneath which it is situated. It arises from the posterior surface of the manubrium sterni, below the origin of the Sternohyoideus, and from the edge of the cartilage of the first rib, and sometimes that of the second rib, it is inserted into the oblique line on the lamina of the thyroid cartilage. This muscle is in close contact with its fellow at the lower part of the neck, but diverges somewhat as it ascends; it is occasionally traversed by a transverse or oblique tendinous inscription. [WP,unvetted]." [http://en.wikipedia.org/wiki/Sternothyroid_muscle] +subset: uberon_slim +synonym: "musculus sternothyroideus" RELATED LATIN [http://en.wikipedia.org/wiki/Sternothyroid_muscle] +synonym: "sterno-thyroideus" RELATED [http://en.wikipedia.org/wiki/Sternothyroid_muscle] +synonym: "sternothyreoidei" RELATED PLURAL [http://en.wikipedia.org/wiki/Sternothyroid_muscle] +synonym: "sternothyreoideus" RELATED [http://en.wikipedia.org/wiki/Sternothyroid_muscle] +synonym: "sternothyroid" EXACT [] +synonym: "sternothyroideus" RELATED [http://en.wikipedia.org/wiki/Sternothyroid_muscle] +xref: EMAPA:19272 +xref: FMA:13343 +xref: http://linkedlifedata.com/resource/umls/id/C0224166 +xref: http://www.snomedbrowser.com/Codes/Details/244831004 +xref: MA:0002386 +xref: NCIT:C53070 +xref: Sternothyroid:muscle +xref: UMLS:C0224166 {source="ncithesaurus:Sternothyroid"} +is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle +relationship: has_muscle_insertion UBERON:0001738 {source="dbpedia"} ! thyroid cartilage +relationship: has_muscle_origin UBERON:0002205 {source="dbpedia"} ! manubrium of sternum +relationship: innervated_by UBERON:0001780 {notes="inferred", source="dbpedia"} ! spinal nerve + +[Term] +id: UBERON:0001110 +name: thyrohyoid muscle +def: "The thyrohyoid muscle is a small, quadrilateral muscle appearing like an upward continuation of the Sternothyreoideus. It belongs to the infrahyoid muscles group. It arises from the oblique line on the lamina of the thyroid cartilage, and is inserted into the lower border of the greater cornu of the hyoid bone. [WP,unvetted]." [http://en.wikipedia.org/wiki/Thyrohyoid_muscle] +subset: uberon_slim +synonym: "musculus thyrohyoideus" RELATED LATIN [http://en.wikipedia.org/wiki/Thyrohyoid_muscle] +synonym: "thyreohyoideus" RELATED [http://en.wikipedia.org/wiki/Thyrohyoid_muscle] +synonym: "thyreohyoideus muscle" RELATED [http://en.wikipedia.org/wiki/Thyrohyoid_muscle] +synonym: "thyrohyoid" EXACT [http://en.wikipedia.org/wiki/Thyrohyoid_muscle] +synonym: "thyrohyoideus" RELATED [http://en.wikipedia.org/wiki/Thyrohyoid_muscle] +xref: EMAPA:19273 +xref: FMA:13344 +xref: http://linkedlifedata.com/resource/umls/id/C0224167 +xref: http://www.snomedbrowser.com/Codes/Details/244832006 +xref: MA:0002393 +xref: NCIT:C53178 +xref: Thyrohyoid:muscle +xref: UMLS:C0224167 {source="ncithesaurus:Thyrohyoid"} +is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle +relationship: has_muscle_insertion UBERON:0001685 {source="dbpedia"} ! hyoid bone +relationship: innervated_by UBERON:0000962 {notes="first cervical nerve via hypoglossal nerve", source="dbpedia"} ! nerve of cervical vertebra +relationship: innervated_by UBERON:0001650 {notes="first cervical nerve via hypoglossal nerve", source="dbpedia"} ! hypoglossal nerve + +[Term] +id: UBERON:0001111 +name: intercostal muscle +def: "the respiratory muscles that arise from the lower border of one rib and insert into the upper border of the adjoining rib" [MESH:A02.633.567.900.500, MGI:csmith, MP:0002280] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "intercostales" RELATED [] +synonym: "musculus intercostalis" EXACT LATIN [FMA:13354, FMA:TA] +synonym: "respiratory muscle" RELATED [] +synonym: "rib muscle" RELATED [] +xref: BTO:0005281 +xref: EFO:0001368 +xref: EHDAA2:0000841 +xref: EHDAA:5988 +xref: EMAPA:18521 +xref: FMA:13354 +xref: GAID:159 +xref: http://linkedlifedata.com/resource/umls/id/C0021724 +xref: http://www.snomedbrowser.com/Codes/Details/181746004 +xref: Intercostal:muscle +xref: MA:0002324 +xref: MA:0003165 +xref: MESH:D007366 +xref: NCIT:C32824 +xref: OpenCyc:Mx4rwQo8QJwpEbGdrcN5Y29ycA +xref: UMLS:C0021724 {source="ncithesaurus:Intercostal_Muscle"} +xref: VHOG:0000903 +is_a: UBERON:0001630 ! muscle organ +is_a: UBERON:0005175 ! chest organ +intersection_of: UBERON:0001630 ! muscle organ +intersection_of: has_muscle_insertion UBERON:0002228 ! rib +intersection_of: has_muscle_origin UBERON:0002228 ! rib +intersection_of: located_in UBERON:0012198 ! intercostal space +relationship: develops_from UBERON:0010970 {source="EHDAA2"} ! intercostal pre-muscle mass +relationship: has_muscle_insertion UBERON:0002228 {notes="ribs 2-12", source="dbpedia"} ! rib +relationship: has_muscle_origin UBERON:0002228 {notes="ribs 1-11", source="dbpedia"} ! rib +relationship: innervated_by UBERON:0003727 {source="dbpedia"} ! intercostal nerve +relationship: located_in UBERON:0012198 ! intercostal space + +[Term] +id: UBERON:0001112 +name: latissimus dorsi muscle +def: "The latissimus dorsi is the larger, flat, dorso-lateral muscle on the trunk, posterior to the arm, and partly covered by the trapezius on its median dorsal region. [WP,unvetted]." [http://en.wikipedia.org/wiki/Latissimus_dorsi_muscle] +comment: Dorsal group[Kardong] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "dorsal latissimus muscle" EXACT [] +synonym: "latissimi dorsi" EXACT PLURAL [] +synonym: "latissimus dorsi" EXACT [] +synonym: "musculus latissimus dorsi" EXACT [] +synonym: "musculus latissimus dorsi" RELATED LATIN [http://en.wikipedia.org/wiki/Latissimus_dorsi_muscle] +xref: EFO:0003067 +xref: EHDAA2:0000932 +xref: EHDAA:8307 +xref: EMAPA:18178 +xref: FMA:13357 +xref: http://en.wikipedia.org/wiki/Latissimus_dorsi_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224362 +xref: http://www.snomedbrowser.com/Codes/Details/181747008 +xref: MA:0002331 +xref: NCIT:C33150 +xref: UMLS:C0224362 {source="ncithesaurus:Musculus_Latissimus_Dorsi"} +xref: VHOG:0000930 +is_a: UBERON:0001482 ! muscle of shoulder +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0034908 ! scapular muscle +relationship: develops_from UBERON:0010982 {source="EHDAA2"} ! latissimus dorsi pre-muscle mass +relationship: has_muscle_antagonist UBERON:0001476 {source="dbpedia"} ! deltoid +relationship: has_muscle_antagonist UBERON:0002380 {source="dbpedia"} ! trapezius muscle +relationship: has_muscle_insertion UBERON:0000976 {notes="floor of intertubercular groove of the humerus", source="dbpedia"} ! humerus +relationship: has_muscle_origin UBERON:0006849 ! scapula +relationship: has_muscle_origin UBERON:0007175 {notes="spinous processes of thoracic T7-T12 thoracolumbar fascia iliac crest and inferior 3 or 4 ribs inferior angle of scapula", source="dbpedia"} ! inferior angle of scapula +relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle + +[Term] +id: UBERON:0001113 +name: lobe of liver +def: "Traditional gross anatomy divided the liver into four lobes based on surface features. The falciform ligament is visible on the front (anterior side) of the liver. This divides the liver into a left anatomical lobe, and a right anatomical lobe." [http://en.wikipedia.org/wiki/Liver#Lobes] +synonym: "hepatic lobe" EXACT [] +synonym: "liver lobe" EXACT [] +synonym: "lobus hepatis" EXACT [] +xref: EMAPA:18306 +xref: FMA:13361 +xref: http://linkedlifedata.com/resource/umls/id/C0447541 +xref: http://www.snomedbrowser.com/Codes/Details/245378000 +xref: Lobes +xref: MA:0000360 +xref: NCIT:C49579 +xref: UMLS:C0447541 {source="ncithesaurus:Liver_Lobe"} +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0009912 {source="FMA"} ! anatomical lobe +relationship: part_of UBERON:0002107 ! liver + +[Term] +id: UBERON:0001114 +name: right lobe of liver +def: "The right lobe is much larger than the left; the proportion between them being as six to one. It occupies the right hypochondrium, and is separated from the left lobe on its upper surface by the falciform ligament; on its under and posterior surfaces by the left sagittal fossa; and in front by the umbilical notch. It is of a somewhat quadrilateral form, its under and posterior surfaces being marked by three fossæ: the porta and the fossæ for the gall-bladder and inferior vena cava, which separate its left part into two smaller lobes; the quadrate and caudate lobes. [WP,unvetted]." [http://en.wikipedia.org/wiki/Right_lobe_of_liver] +subset: uberon_slim +subset: vertebrate_core +synonym: "2nd lobe" RELATED [TAO:0005173] +synonym: "gall bladder lobe" RELATED SENSU [ZFA:0005173] +synonym: "liver right lobe" EXACT [] +synonym: "lobus hepaticus dexter" EXACT LATIN [] +synonym: "lobus hepatis dexter" RELATED LATIN [http://en.wikipedia.org/wiki/Right_lobe_of_liver] +synonym: "right hepatic lobe" RELATED [EMAPA:18311] +synonym: "right liver lobe" EXACT [ZFA:0005173] +synonym: "second lobe" RELATED [TAO:0005173] +xref: EHDAA2:0001008 +xref: EHDAA:4001 +xref: EMAPA:18311 +xref: FMA:13362 +xref: http://en.wikipedia.org/wiki/Right_lobe_of_liver +xref: http://linkedlifedata.com/resource/umls/id/C0227481 +xref: http://www.snomedbrowser.com/Codes/Details/362182008 +xref: MA:0000363 +xref: NCIT:C33481 +xref: TAO:0005173 +xref: UMLS:C0227481 {source="ncithesaurus:Right_Lobe_of_the_Liver"} +xref: VHOG:0001424 +xref: ZFA:0005173 +is_a: UBERON:0001113 ! lobe of liver + +[Term] +id: UBERON:0001115 +name: left lobe of liver +def: "The left lobe is smaller and more flattened than the right. It is situated in the epigastric and left hypochondriac regions. Its upper surface is slightly convex and is moulded on to the diaphragm; its under surface presents the gastric impression and omental tuberosity. [WP,unvetted]." [http://en.wikipedia.org/wiki/Left_lobe_of_liver] +subset: uberon_slim +subset: vertebrate_core +synonym: "left hepatic lobe" RELATED [EMAPA:18307] +synonym: "left liver lobe" EXACT [] +synonym: "liver left lobe" EXACT [] +synonym: "lobus hepaticus sinister" EXACT LATIN [] +synonym: "lobus hepatis sinister" RELATED LATIN [http://en.wikipedia.org/wiki/Left_lobe_of_liver] +xref: EHDAA2:0001000 +xref: EHDAA:3995 +xref: EMAPA:18307 +xref: FMA:13363 +xref: http://en.wikipedia.org/wiki/Left_lobe_of_liver +xref: http://linkedlifedata.com/resource/umls/id/C0227486 +xref: http://www.snomedbrowser.com/Codes/Details/362183003 +xref: MA:0000361 +xref: NCIT:C32965 +xref: TAO:0005172 +xref: UMLS:C0227486 {source="ncithesaurus:Left_Lobe_of_the_Liver"} +xref: VHOG:0001423 +xref: ZFA:0005172 +is_a: UBERON:0001113 ! lobe of liver + +[Term] +id: UBERON:0001116 +name: quadrate lobe of liver +def: "The quadrate lobe is an area of the liver situated on the under surface of the right lobe, bounded in front by the anterior margin of the liver; behind by the porta hepatis; on the right, by the fossa for the gall-bladder; and on the left, by the fossa for the umbilical vein. It is oblong in shape, its antero-posterior diameter being greater than its transverse. [WP,unvetted]." [http://en.wikipedia.org/wiki/Quadrate_lobe_of_liver] +subset: uberon_slim +synonym: "liver quadrate lobe" EXACT [] +synonym: "lobus quadratus" EXACT [] +synonym: "lobus quadratus" RELATED LATIN [http://en.wikipedia.org/wiki/Quadrate_lobe_of_liver] +synonym: "lobus quadratus hepatis" EXACT LATIN [FMA:13364, FMA:TA] +xref: EHDAA2:0001012 +xref: EHDAA:8082 +xref: EMAPA:18318 +xref: FMA:13364 +xref: http://en.wikipedia.org/wiki/Quadrate_lobe_of_liver +xref: http://www.snomedbrowser.com/Codes/Details/279929003 +xref: MA:0000365 +xref: NCIT:C33001 +xref: VHOG:0000509 +is_a: UBERON:0001114 ! right lobe of liver + +[Term] +id: UBERON:0001117 +name: caudate lobe of liver +def: "The caudate lobe (posterior hepatic segment I, Spigelian lobe) is situated upon the postero-superior surface of the liver on the right lobe of the liver, opposite the tenth and eleventh thoracic vertebrae. It is bounded on the left side by the physiological division of the liver called the ligamentum venosum. It is bounded, below, by the porta; on the right, by the fossa for the inferior vena cava; and, on the left, by the fossa for the ductus venosus. It looks backward, being nearly vertical in position; it is longer from above downward than from side to side, and is somewhat concave in the transverse direction. The caudate process is a small elevation of the hepatic substance extending obliquely and laterally, from the lower extremity of the caudate lobe to the under surface of the right lobe. It is situated behind the porta, and separates the fossa for the gall-bladder from the commencement of the fossa for the inferior vena cava. Budd-Chiari syndrome, caused by occlusion of hepatic venous outflow, can lead to hypertrophy of the caudate lobe due to its own caval anastomosis that allows for continued function of this lobe of the liver. [WP,unvetted]." [http://en.wikipedia.org/wiki/Caudate_lobe_of_liver] +subset: uberon_slim +synonym: "couinaud hepatic segment I" EXACT [FMA:13365] +synonym: "hepatovenous segment I" EXACT [] +synonym: "liver caudate lobe" EXACT [] +synonym: "liver caudate process" RELATED [] +synonym: "lobus caudatus" EXACT LATIN [] +synonym: "lobus caudatus hepatis" EXACT LATIN [FMA:13365, FMA:TA] +synonym: "pars posterior hepatis" EXACT LATIN [FMA:13365, FMA:TA] +synonym: "posterior hepatic segment i" EXACT [] +synonym: "posterior liver" EXACT [] +synonym: "posterior part of liver" EXACT [] +synonym: "segment hepatis posterius I" RELATED LATIN [http://en.wikipedia.org/wiki/Caudate_lobe_of_liver] +synonym: "segment I of liver" EXACT [] +synonym: "segmentum hepatis I" EXACT LATIN [FMA:13365, FMA:TA] +synonym: "Spiegelian lobe" EXACT [] +synonym: "Spigel lobe" EXACT [] +xref: EHDAA2:0001005 +xref: EHDAA:6990 +xref: EMAPA:18313 +xref: FMA:13365 +xref: http://en.wikipedia.org/wiki/Caudate_lobe_of_liver +xref: http://linkedlifedata.com/resource/umls/id/C0227489 +xref: http://www.snomedbrowser.com/Codes/Details/362184009 +xref: MA:0000364 +xref: NCIT:C33000 +xref: UMLS:C0227489 {source="ncithesaurus:Lobus_Caudatus"} +xref: VHOG:0000508 +is_a: UBERON:0001114 {source="MA"} ! right lobe of liver +relationship: part_of UBERON:0001115 {source="FMA"} ! left lobe of liver + +[Term] +id: UBERON:0001118 +name: lobe of thyroid gland +def: "A lobe of tissue that is part of a thyroid gland." [http://orcid.org/0000-0002-6601-2165] +comment: The lobes of the thyroid gland are conical in shape, the apex of each being directed upward and lateralward as far as the junction of the middle with the lower third of the thyroid cartilage; the base looks downward, and is on a level with the fifth or sixth tracheal ring. Each lobe is about 5 cm. long; its greatest width is about 3 cm. , and its thickness about 2 cm. The lateral or superficial surface is convex, and covered by the skin, the superficial and deep fasciæ, the Sternocleidomastoideus, the superior belly of the Omohyoideus, the Sternohyoideus and Sternothyreoideus, and beneath the last muscle by the pretracheal layer of the deep fascia, which forms a capsule for the gland. The deep or medial surface is moulded over the underlying structures, viz. , the thyroid and cricoid cartilages, the trachea, the Constrictor pharyngis inferior and posterior part of the Cricothyreoideus, the esophagus (particularly on the left side of the neck), the superior and inferior thyroid arteries, and the recurrent nerves. The anterior border is thin, and inclines obliquely from above downward toward the middle line of the neck, while the posterior border is thick and overlaps the common carotid artery, and, as a rule, the parathyroids +synonym: "lobuli glandulae thyroideae" RELATED LATIN [http://en.wikipedia.org/wiki/Lobes_of_thyroid_gland] +synonym: "lobus (glandula thyroidea)" EXACT [] +synonym: "lobus glandulae thyroideae" EXACT LATIN [FMA:13367, FMA:TA] +synonym: "thyroid gland lobe" EXACT [] +synonym: "thyroid lobe" EXACT [] +xref: EHDAA2:0002032 +xref: EMAPA:18196 +xref: FMA:13367 +xref: http://en.wikipedia.org/wiki/Lobes_of_thyroid_gland +xref: http://linkedlifedata.com/resource/umls/id/C0447647 +xref: http://www.snomedbrowser.com/Codes/Details/245537001 +xref: MA:0000131 +xref: NCIT:C33784 +xref: UMLS:C0447647 {source="ncithesaurus:Thyroid_Gland_Lobe"} +xref: VHOG:0000732 +is_a: UBERON:0009912 ! anatomical lobe +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:0035075 ! thymus subunit +intersection_of: UBERON:0009912 ! anatomical lobe +intersection_of: part_of UBERON:0002046 ! thyroid gland +relationship: in_lateral_side_of UBERON:0002046 {source="FMA-abduced-lr"} ! thyroid gland + +[Term] +id: UBERON:0001119 +name: right lobe of thyroid gland +def: "A lobe of thyroid gland that is in the right side of a thyroid gland." [OBOL:automatic] +synonym: "lobus dexter (glandula thyroidea)" EXACT [] +synonym: "right thyroid lobe" EXACT [] +synonym: "thyroid gland right lobe" EXACT [] +xref: EHDAA2:0001759 +xref: EMAPA:18198 +xref: FMA:13368 +xref: http://linkedlifedata.com/resource/umls/id/C0229581 +xref: http://www.snomedbrowser.com/Codes/Details/170482008 +xref: MA:0000729 +xref: NCIT:C33491 +xref: UMLS:C0229581 {source="ncithesaurus:Right_Thyroid_Gland_Lobe"} +xref: VHOG:0000733 +is_a: UBERON:0001118 ! lobe of thyroid gland +intersection_of: UBERON:0001118 ! lobe of thyroid gland +intersection_of: in_right_side_of UBERON:0002046 ! thyroid gland +relationship: in_right_side_of UBERON:0002046 ! thyroid gland + +[Term] +id: UBERON:0001120 +name: left lobe of thyroid gland +def: "A lobe of thyroid gland that is in the left side of a thyroid gland." [OBOL:automatic] +synonym: "left thyroid lobe" EXACT [] +synonym: "lobus sinister (glandula thyroidea)" EXACT [] +synonym: "thyroid gland left lobe" EXACT [] +xref: EHDAA2:0000965 +xref: EMAPA:18197 +xref: FMA:13369 +xref: http://linkedlifedata.com/resource/umls/id/C0229582 +xref: http://www.snomedbrowser.com/Codes/Details/170784008 +xref: MA:0000728 +xref: NCIT:C32973 +xref: UMLS:C0229582 {source="ncithesaurus:Left_Thyroid_Gland_Lobe"} +xref: VHOG:0000734 +is_a: UBERON:0001118 ! lobe of thyroid gland +intersection_of: UBERON:0001118 ! lobe of thyroid gland +intersection_of: in_left_side_of UBERON:0002046 ! thyroid gland +relationship: in_left_side_of UBERON:0002046 ! thyroid gland + +[Term] +id: UBERON:0001121 +name: longus colli muscle +def: "The Longus colli muscle is a muscle of the human body. The Longus colli is situated on the anterior surface of the vertebral column, between the atlas and the third thoracic vertebra. It is broad in the middle, narrow and pointed at either end, and consists of three portions, a superior oblique, an inferior oblique, and a vertical. The superior oblique portion arises from the anterior tubercles of the transverse processes of the third, fourth, and fifth cervical vertebræ and, ascending obliquely with a medial inclination, is inserted by a narrow tendon into the tubercle on the anterior arch of the atlas. The inferior oblique portion, the smallest part of the muscle, arises from the front of the bodies of the first two or three thoracic vertebræ; and, ascending obliquely in a lateral direction, is inserted into the anterior tubercles of the transverse processes of the fifth and sixth cervical vertebræ. The vertical portion arises, below, from the front of the bodies of the upper three thoracic and lower three cervical vertebræ, and is inserted into the front of the bodies of the second, third, and fourth cervical vertebræ. [WP,unvetted]." [http://en.wikipedia.org/wiki/Longus_colli_muscle] +subset: organ_slim +subset: uberon_slim +synonym: "longi colli" RELATED [http://en.wikipedia.org/wiki/Longus_colli_muscle] +synonym: "longus colli" EXACT [MA:0002341] +synonym: "longus colli muscle" EXACT [http://en.wikipedia.org/wiki/Longus_colli_muscle] +synonym: "musculus longus colli" RELATED LATIN [http://en.wikipedia.org/wiki/Longus_colli_muscle] +xref: EMAPA:37654 {source="MA:th"} +xref: FMA:13370 +xref: http://en.wikipedia.org/wiki/Longus_colli_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224169 +xref: http://www.snomedbrowser.com/Codes/Details/244836009 +xref: MA:0002341 +xref: NCIT:C52959 +xref: UMLS:C0224169 {source="ncithesaurus:Longus_Colli"} +is_a: UBERON:0001630 ! muscle organ +is_a: UBERON:0005178 ! thoracic cavity element +relationship: has_muscle_insertion UBERON:0003996 {source="dbpedia"} ! cervical vertebra 1 arcus anterior +relationship: has_muscle_origin UBERON:0001077 {notes="Transverse processes of C-5 to T-3", source="dbpedia"} ! transverse process of vertebra +relationship: located_in UBERON:0008818 {source="FMA-modified"} ! superior mediastinum + +[Term] +id: UBERON:0001122 +name: scalenus medius +def: "The Scalenus medius, the largest and longest of the three scalene muscles, arises from the posterior tubercles of the transverse processes of the lower six cervical vertebræ. It descendes along the side of the vertebral column to insert by a broad attachment into the upper surface of the first rib, between the tubercle and the subclavian groove. The brachial plexus and the subclavian artery pass anterior to it. Because it elevates the upper ribs, the middle scalene muscle is also one of the accessory muscles of respiration. [WP,unvetted]." [http://en.wikipedia.org/wiki/Scalenus_medius] +subset: uberon_slim +synonym: "medial scalene muscle" EXACT [] +synonym: "middle scalene" EXACT [] +synonym: "musculus scalenus medius" EXACT LATIN [FMA:13386, FMA:TA] +synonym: "musculus scalenus medius" RELATED LATIN [http://en.wikipedia.org/wiki/Scalenus_medius] +synonym: "scalenus medius muscle" EXACT [] +xref: EMAPA:37738 {source="MA:th"} +xref: FMA:13386 +xref: http://linkedlifedata.com/resource/umls/id/C0224174 +xref: http://www.snomedbrowser.com/Codes/Details/244844009 +xref: MA:0002370 +xref: NCIT:C52986 +xref: Scalenus:medius +xref: UMLS:C0224174 {source="ncithesaurus:Scalenus_Medius"} +is_a: UBERON:0002377 ! muscle of neck +is_a: UBERON:0003897 ! axial muscle +is_a: UBERON:0004518 ! muscle of vertebral column +relationship: has_muscle_insertion UBERON:0004601 {source="dbpedia"} ! rib 1 +relationship: has_muscle_origin UBERON:0002413 {source="dbpedia"} ! cervical vertebra +relationship: innervated_by UBERON:0000962 {notes="Ventral rami of the third to eighth cervical spinal nerves", source="dbpedia"} ! nerve of cervical vertebra + +[Term] +id: UBERON:0001123 +name: scalenus posterior +def: "The Scalenus posterior (Scalenus posticus), the smallest and most deeply seated of the three Scaleni, arises, by two or three separate tendons, from the posterior tubercles of the transverse processes of the lower two or three cervical vertebræ, and is inserted by a thin tendon into the outer surface of the second rib, behind the attachment of the serratus ventralis. It is occasionally blended with the Scalenus medius. [WP,unvetted]." [http://en.wikipedia.org/wiki/Scalenus_posterior] +subset: uberon_slim +synonym: "musculus scalenus posterior" EXACT LATIN [FMA:13387, FMA:TA] +synonym: "musculus scalenus posterior" RELATED LATIN [http://en.wikipedia.org/wiki/Scalenus_posterior] +synonym: "posterior scalene" EXACT [] +synonym: "posterior scalene muscle" EXACT [] +synonym: "scalenus dorsalis" EXACT [] +synonym: "scalenus dorsalis muscle" EXACT [] +xref: EMAPA:37737 {source="MA:th"} +xref: FMA:13387 +xref: http://linkedlifedata.com/resource/umls/id/C1710019 +xref: MA:0002369 +xref: NCIT:C52985 +xref: Scalenus:posterior +xref: UMLS:C1710019 {source="ncithesaurus:Scalenus_Dorsalis"} +is_a: UBERON:0002377 ! muscle of neck +disjoint_from: UBERON:0008622 {source="lexical"} ! scalenus anterior +relationship: has_muscle_origin UBERON:0001077 {notes="transverse processes of C4 - C6", source="dbpedia"} ! transverse process of vertebra + +[Term] +id: UBERON:0001125 +name: serratus ventralis +def: "The serratus ventralis is a muscle that originates on the surface of the upper eight or nine ribs at the side of the chest and inserts along the entire anterior length of the medial border of the scapula. [WP,unvetted]." [http://en.wikipedia.org/wiki/Serratus_anterior_muscle] +subset: pheno_slim +subset: uberon_slim +synonym: "Boxer's muscle" EXACT [] +synonym: "musculus serratus anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Serratus_anterior_muscle] +synonym: "serratus anterior" EXACT [VHOG:0000679] +synonym: "serratus anterior muscle" EXACT [] +synonym: "serratus lateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Serratus_anterior_muscle] +synonym: "serratus ventralis muscle" EXACT [] +xref: EHDAA2:0001832 +xref: EHDAA:9463 +xref: EMAPA:18525 +xref: FMA:13397 +xref: http://en.wikipedia.org/wiki/Serratus_anterior_muscle +xref: http://linkedlifedata.com/resource/umls/id/C1710059 +xref: http://www.snomedbrowser.com/Codes/Details/181748003 +xref: MA:0002378 +xref: NCIT:C53014 +xref: OpenCyc:Mx4rvWn_D5wpEbGdrcN5Y29ycA +xref: UMLS:C1710059 {source="ncithesaurus:Serratus_Ventralis"} +xref: VHOG:0000679 +is_a: UBERON:0001482 ! muscle of shoulder +is_a: UBERON:0034908 ! scapular muscle +relationship: develops_from UBERON:0010986 {source="EHDAA2"} ! serratus ventralis pre-muscle mass +relationship: has_muscle_antagonist UBERON:0002380 {source="dbpedia"} ! trapezius muscle +relationship: has_muscle_insertion UBERON:0006849 {notes="costal aspect of medial margin of the scapula", source="dbpedia"} ! scapula +relationship: has_muscle_origin UBERON:0002228 {notes="fleshy slips from the outer surface of upper 8 or 9 ribs", source="dbpedia"} ! rib +relationship: innervated_by UBERON:0003726 {notes="long thoracic nerve", source="dbpedia"} ! thoracic nerve + +[Term] +id: UBERON:0001126 +name: serratus dorsalis superior muscle +def: "The serratus dorsalis superior is a thin, quadrilateral muscle, situated at the upper and back part of the thorax. It arises by a thin and broad aponeurosis from the lower part of the ligamentum nuchae, from the spinous processes of the seventh cervical and upper two or three thoracic vertebræ and from the supraspinal ligament. Inclining downward and lateralward it becomes muscular, and is inserted, by four fleshy digitations, into the upper borders of the second, third, fourth, and fifth ribs, a little beyond their angles. [WP,unvetted]." [http://en.wikipedia.org/wiki/Serratus_posterior_superior_muscle] +subset: uberon_slim +synonym: "serratus dorsalis cranialis" EXACT [MA:0002377] +synonym: "serratus dorsalis cranialis muscle" EXACT [] +synonym: "serratus posterior superior" EXACT [FMA:13401] +synonym: "superior serratus dorsalis" EXACT [] +synonym: "superior serratus posterior" EXACT [FMA:13401] +xref: EMAPA:37698 {source="MA:th"} +xref: FMA:13401 +xref: http://en.wikipedia.org/wiki/Serratus_posterior_superior_muscle +xref: http://linkedlifedata.com/resource/umls/id/C1710058 +xref: http://www.snomedbrowser.com/Codes/Details/244935007 +xref: MA:0002377 +xref: NCIT:C53012 +xref: UMLS:C1710058 {source="ncithesaurus:Serratus_Dorsalis_Cranialis"} +is_a: UBERON:0003830 ! thoracic segment muscle +is_a: UBERON:0011217 {source="FMA"} ! serratus dorsalis muscle +relationship: has_muscle_origin UBERON:0000351 ! nuchal ligament +relationship: has_muscle_origin UBERON:0001076 {notes="C7 thru T3 in human", source="dbpedia"} ! neural spine + +[Term] +id: UBERON:0001127 +name: serratus dorsalis inferior muscle +def: "A muscle that originates from the vertebrae and inserts in the ribs." [http://en.wikipedia.org/wiki/Serratus_posterior_inferior_muscle] +subset: uberon_slim +synonym: "inferior serratus dorsalis" EXACT [] +synonym: "inferior serratus posterior" EXACT [FMA:13402] +synonym: "posterior serratus" RELATED [] +synonym: "serratus dorsalis caudalis" EXACT [] +synonym: "serratus posterior inferior" EXACT [FMA:13402] +synonym: "serratus posterior inferior" RELATED [MA:0002376] +xref: EMAPA:37697 {source="MA:th"} +xref: FMA:13402 +xref: http://en.wikipedia.org/wiki/Serratus_posterior_inferior_muscle +xref: http://linkedlifedata.com/resource/umls/id/C1711277 +xref: http://www.snomedbrowser.com/Codes/Details/244936008 +xref: MA:0002376 +xref: NCIT:C53007 +xref: UMLS:C1711277 {source="ncithesaurus:Serratus_Dorsalis_Caudalis"} +is_a: UBERON:0011217 {source="FMA"} ! serratus dorsalis muscle +relationship: has_muscle_origin UBERON:0002412 {notes="T11 through L2 in human", source="dbpedia"} ! vertebra + +[Term] +id: UBERON:0001128 +name: sternocleidomastoid +def: "A paired muscle in the superficial layers of the anterior portion of the neck. It acts to flex and rotate the head. It also acts as an accessory muscle of inspiration, along with the scalene muscles of the neck. [WP,unvetted]." [http://en.wikipedia.org/wiki/Sternocleidomastoid_muscle] +subset: uberon_slim +synonym: "musculus sternocleidomastoideus" RELATED LATIN [http://en.wikipedia.org/wiki/Sternocleidomastoid_muscle] +synonym: "SCM" BROAD ABBREVIATION [] +synonym: "sterno-cleido-mastoid" RELATED [http://en.wikipedia.org/wiki/Sternocleidomastoid_muscle] +synonym: "sterno-mastoid" EXACT [] +synonym: "sterno-mastoid" RELATED [http://en.wikipedia.org/wiki/Sternocleidomastoid_muscle] +synonym: "sternocleidomastoid" RELATED [http://en.wikipedia.org/wiki/Sternocleidomastoid_muscle] +synonym: "sternocleidomastoid muscle" EXACT [BTO:0005125] +synonym: "sternocleidomastoid muscles" RELATED [http://en.wikipedia.org/wiki/Sternocleidomastoid_muscle] +synonym: "sternocleidomastoidei" RELATED [http://en.wikipedia.org/wiki/Sternocleidomastoid_muscle] +synonym: "sternocleidomastoideus" RELATED [http://en.wikipedia.org/wiki/Sternocleidomastoid_muscle] +synonym: "sternocleidomastoideus muscle" RELATED [http://en.wikipedia.org/wiki/Sternocleidomastoid_muscle] +synonym: "sternocleidomastoids" RELATED [http://en.wikipedia.org/wiki/Sternocleidomastoid_muscle] +synonym: "sternomastoid" EXACT [] +synonym: "sternomastoid" RELATED [http://en.wikipedia.org/wiki/Sternocleidomastoid_muscle] +synonym: "sternomastoid muscle" EXACT [] +synonym: "sternomastoid muscle" RELATED [http://en.wikipedia.org/wiki/Sternocleidomastoid_muscle] +synonym: "supraclavicularis muscle" RELATED [http://en.wikipedia.org/wiki/Sternocleidomastoid_muscle] +xref: BTO:0005125 +xref: EMAPA:25137 +xref: FMA:13407 +xref: http://linkedlifedata.com/resource/umls/id/C0224153 +xref: http://www.snomedbrowser.com/Codes/Details/181741009 +xref: MA:0002384 +xref: NCIT:C33616 +xref: OpenCyc:Mx4rv2bMg5wpEbGdrcN5Y29ycA +xref: Sternocleidomastoid:muscle +xref: UMLS:C0224153 {source="ncithesaurus:Sternocleidomastoid_Muscle"} +xref: VHOG:0000853 +is_a: UBERON:0002377 ! muscle of neck +is_a: UBERON:0003897 ! axial muscle +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0011364 ! cleidocephalicus muscle +relationship: develops_from UBERON:0010987 ! sterno-mastoid pre-muscle mass +relationship: has_muscle_origin UBERON:0002205 {notes="manubrium sterni medial portion of the clavicle", source="dbpedia"} ! manubrium of sternum +relationship: innervated_by UBERON:0003725 {notes="sensory: cervical plexus", source="dbpedia"} ! cervical nerve plexus + +[Term] +id: UBERON:0001129 +name: subscapularis muscle +def: "The subscapularis is a large triangular muscle which fills the subscapular fossa and inserts into the lesser tubercle of the humerus and the front of the capsule of the shoulder-joint. [WP,unvetted]." [http://en.wikipedia.org/wiki/Subscapularis_muscle] +comment: Dorsal group[Kardong] +subset: uberon_slim +synonym: "musculus subscapularis" RELATED LATIN [http://en.wikipedia.org/wiki/Subscapularis_muscle] +synonym: "subcoracoscapularis" RELATED SENSU [ISBN:0073040584] +synonym: "subscapularis" EXACT [MA:0002388] +xref: EHDAA2:0001943 +xref: EHDAA:8317 +xref: EMAPA:18181 +xref: FMA:13413 +xref: http://linkedlifedata.com/resource/umls/id/C0584884 +xref: http://www.snomedbrowser.com/Codes/Details/277446000 +xref: MA:0002388 +xref: NCIT:C33651 +xref: OpenCyc:Mx4rviCRIJwpEbGdrcN5Y29ycA +xref: Subscapularis:muscle +xref: UMLS:C0584884 {source="ncithesaurus:Subscapularis"} +xref: VHOG:0000850 +is_a: UBERON:0001482 ! muscle of shoulder +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010891 ! pectoral complex muscle +relationship: develops_from UBERON:0010993 ! subscapularis pre-muscle mass +relationship: has_muscle_insertion UBERON:0000976 {notes="lesser tubercle of humerus", source="dbpedia"} ! humerus +relationship: has_muscle_origin UBERON:4200038 ! subscapular fossa +relationship: part_of UBERON:0003683 {source="Wikipedia"} ! rotator cuff +relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle + +[Term] +id: UBERON:0001130 +name: vertebral column +def: "Subdivision of skeletal system that consists of all the vertebra and associated skeletal elements and joints in the body[modified from VSAO]." [https://orcid.org/0000-0002-6601-2165, https://sourceforge.net/tracker/?func=detail&aid=3530322&group_id=76834&atid=2257941, VSAO:0000185] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "backbone" NARROW [FMA:13478] +synonym: "columna vertebralis" RELATED [BTO:0000818] +synonym: "dorsal spine" RELATED [BTO:0000818] +synonym: "spinal column" RELATED [MESH:A02.835.232.834] +synonym: "spine" BROAD [FMA:13478] +synonym: "vertebral column skeleton" NARROW [AAO:0000699] +synonym: "vertebral region" RELATED [] +xref: AAO:0000699 +xref: AAO:0000734 +xref: BTO:0000818 +xref: EFO:0001369 +xref: EHDA:10119 +xref: EMAPA:35919 +xref: FMA:13478 +xref: GAID:106 +xref: galen:SpinalColumn +xref: http://linkedlifedata.com/resource/umls/id/C0037949 +xref: http://linkedlifedata.com/resource/umls/id/C1519455 +xref: http://www.snomedbrowser.com/Codes/Details/44300000 +xref: MA:0002416 +xref: MESH:D013131 +xref: NCIT:C12998 +xref: NCIT:C33588 +xref: NIF_Subcellular:sao1145756102 +xref: OpenCyc:Mx4rv2j-CpwpEbGdrcN5Y29ycA +xref: OpenCyc:Mx4rv6GF55wpEbGdrcN5Y29ycA +xref: OpenCyc:Mx4rvVkFEpwpEbGdrcN5Y29ycA +xref: TAO:0001559 +xref: UMLS:C0037949 {source="ncithesaurus:Vertebral_Column"} +xref: UMLS:C1519455 {source="ncithesaurus:Spinal_Cord_Column"} +xref: Vertebral:column +xref: VHOG:0001142 +xref: VSAO:0000185 +xref: XAO:0003074 +xref: ZFA:0001559 +is_a: UBERON:0000075 ! subdivision of skeletal system +intersection_of: UBERON:0000075 ! subdivision of skeletal system +intersection_of: composed_primarily_of UBERON:0010913 ! vertebral element +disjoint_from: UBERON:0008260 ! spine appendage +relationship: composed_primarily_of UBERON:0010913 ! vertebral element +relationship: part_of UBERON:0011138 {source="cjm"} ! postcranial axial skeletal system +relationship: protects UBERON:0002240 ! spinal cord + +[Term] +id: UBERON:0001131 +name: vertebral foramen +def: "A foramen within a vertebral element through which the spinal cord runs. It is formed by the anterior segment, and the posterior part, the vertebral arch." [http://en.wikipedia.org/wiki/Vertebral_foramen, http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "foramen vertebrale" RELATED LATIN [http://en.wikipedia.org/wiki/Vertebral_foramen] +synonym: "vertebra neural canal" EXACT [] +xref: AAO:0000729 +xref: EMAPA:37803 {source="MA:th"} +xref: FMA:13479 +xref: http://www.snomedbrowser.com/Codes/Details/280734009 +xref: MA:0001454 +xref: OpenCyc:Mx4rv_EvQZwpEbGdrcN5Y29ycA +xref: Vertebral:foramen +is_a: UBERON:0004111 ! anatomical conduit +intersection_of: UBERON:0004111 ! anatomical conduit +intersection_of: conduit_for UBERON:0002240 ! spinal cord +intersection_of: lumen_of UBERON:0010913 ! vertebral element +relationship: conduit_for UBERON:0002240 ! spinal cord +relationship: lumen_of UBERON:0010913 ! vertebral element +relationship: part_of UBERON:0006692 ! vertebral canal +relationship: part_of UBERON:0010913 ! vertebral element + +[Term] +id: UBERON:0001132 +name: parathyroid gland +def: "The parathyroid gland is an endocrine gland for secretion of parathyroid hormone, usually found as a pair, embedded in the connective tissue capsule on the posterior surface of the thyroid gland. Parathyroid regulates calcium and phosphorous metabolism." [http://en.wikipedia.org/wiki/Parathyroid_gland, ISBN:0-683-40008-8, MP:0000678] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "epithelial body" RELATED [XAO:0000167] +synonym: "parathyroid" EXACT [] +synonym: "parathyroid secreting cell" RELATED [] +xref: AAO:0010545 +xref: BTO:0000997 +xref: CALOHA:TS-0745 +xref: EFO:0000862 +xref: EMAPA:32812 +xref: EV:0100134 +xref: FMA:13890 +xref: GAID:452 +xref: http://linkedlifedata.com/resource/umls/id/C0030518 +xref: http://www.snomedbrowser.com/Codes/Details/181121007 +xref: MA:0000128 +xref: MAT:0000082 +xref: MESH:D010280 +xref: MIAA:0000082 +xref: NCIT:C12765 +xref: Parathyroid:gland +xref: UMLS:C0030518 {source="ncithesaurus:Parathyroid_Gland"} +xref: VHOG:0001188 +xref: XAO:0000167 +is_a: UBERON:0002368 ! endocrine gland + +[Term] +id: UBERON:0001133 +name: cardiac muscle tissue +alt_id: UBERON:0007096 +def: "Muscle tissue composed of cardiac muscle cells, forming the muscles of the heart[ZFA,modified]." [ZFA:0005280] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "cardiac muscle" EXACT [] +synonym: "cardiac muscle muscle tissue" EXACT [OBOL:automatic] +synonym: "cardiac muscle textus muscularis" EXACT [OBOL:automatic] +synonym: "cardiac musculature" RELATED [BILA:0000134] +synonym: "heart muscle muscle tissue" EXACT [OBOL:automatic] +synonym: "heart muscle textus muscularis" EXACT [OBOL:automatic] +synonym: "heart myocardium muscle tissue" EXACT [OBOL:automatic] +synonym: "heart myocardium textus muscularis" EXACT [OBOL:automatic] +synonym: "muscle of heart muscle tissue" EXACT [OBOL:automatic] +synonym: "muscle of heart textus muscularis" EXACT [OBOL:automatic] +synonym: "muscle tissue of cardiac muscle" EXACT [OBOL:automatic] +synonym: "muscle tissue of heart muscle" EXACT [OBOL:automatic] +synonym: "muscle tissue of heart myocardium" EXACT [OBOL:automatic] +synonym: "muscle tissue of muscle of heart" EXACT [OBOL:automatic] +synonym: "muscle tissue of myocardium" EXACT [OBOL:automatic] +synonym: "myocardium muscle tissue" EXACT [OBOL:automatic] +synonym: "myocardium textus muscularis" EXACT [OBOL:automatic] +synonym: "textus muscularis of cardiac muscle" EXACT [OBOL:automatic] +synonym: "textus muscularis of heart muscle" EXACT [OBOL:automatic] +synonym: "textus muscularis of heart myocardium" EXACT [OBOL:automatic] +synonym: "textus muscularis of muscle of heart" EXACT [OBOL:automatic] +synonym: "textus muscularis of myocardium" EXACT [OBOL:automatic] +xref: AAO:0010245 +xref: AEO:0000142 +xref: BILA:0000134 +xref: BTO:0000199 +xref: CALOHA:TS-0440 +xref: Cardiac:muscle +xref: EHDAA2:0003142 +xref: EMAPA:32688 +xref: FMA:14068 +xref: galen:CardiacMuscle +xref: galen:CardiacMuscleTissue +xref: ncithesaurus:Heart_Muscle +xref: TAO:0005280 +xref: ZFA:0005280 +is_a: UBERON:0002036 ! striated muscle tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +disjoint_from: UBERON:0001134 ! skeletal muscle tissue +relationship: part_of UBERON:0000948 {source="ZFA"} ! heart + +[Term] +id: UBERON:0001134 +name: skeletal muscle tissue +def: "Muscle tissue that consists primarily of skeletal muscle fibers." [https://github.com/obophenotype/uberon/issues/324] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "skeletal muscle" BROAD [] +synonym: "skeletal muscle system" RELATED [BTO:0001103] +synonym: "somatic muscle" RELATED [BTO:0001103] +xref: EMAPA:32716 +xref: FMA:14069 +xref: http://en.wikipedia.org/wiki/Skeletal_striated_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0242692 +xref: http://www.snomedbrowser.com/Codes/Details/426215008 +xref: MA:0002439 +xref: NCIT:C13050 +xref: UMLS:C0242692 {source="ncithesaurus:Skeletal_Muscle_Tissue"} +is_a: UBERON:0002036 ! striated muscle tissue +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/dosumis +property_value: dc-contributor https://github.com/mellybelly +property_value: dc-contributor https://github.com/RDruzinsky +relationship: develops_from UBERON:0003082 ! myotome +relationship: part_of UBERON:0014892 ! skeletal muscle organ + +[Term] +id: UBERON:0001135 +name: smooth muscle tissue +def: "Muscle tissue which is unstriated, composed primarily of smooth muscle fibers surrounded by a reticulum of collagen and elastic fibers. Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length[GO]." [GO:0006939, http://en.wikipedia.org/wiki/Smooth_muscle_tissue] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "involuntary muscle" EXACT [] +synonym: "non-striated muscle" EXACT [] +synonym: "smooth muscle" EXACT [] +synonym: "textus muscularis levis; textus muscularis nonstriatus" RELATED LATIN [http://en.wikipedia.org/wiki/Smooth_muscle_tissue] +synonym: "textus muscularis nonstriatus" EXACT LATIN [FMA:14070, FMA:TA] +synonym: "visceral muscle" NARROW SENSU [] +synonym: "visceral muscle tissue" NARROW SENSU [] +xref: AAO:0010244 +xref: AEO:0000141 +xref: BTO:0001260 +xref: CALOHA:TS-0943 +xref: EFO:0000889 +xref: EHDAA2:0003141 +xref: EMAPA:32717 +xref: EV:0100378 +xref: FBbt:00003525 +xref: FMA:14070 +xref: GAID:167 +xref: galen:SmoothMuscle +xref: galen:SmoothMuscleTissue +xref: http://en.wikipedia.org/wiki/Smooth_muscle_tissue +xref: http://linkedlifedata.com/resource/umls/id/C1267092 +xref: MA:0000166 +xref: MAT:0000303 +xref: MESH:D009130 +xref: MIAA:0000303 +xref: NCIT:C12437 +xref: OpenCyc:Mx4rvvSS3pwpEbGdrcN5Y29ycA +xref: TAO:0005274 +xref: UMLS:C1267092 {source="ncithesaurus:Smooth_Muscle_Tissue"} +xref: VHOG:0001246 +xref: WBbt:0005781 +xref: XAO:0000175 +xref: ZFA:0005274 +is_a: UBERON:0002385 ! muscle tissue +disjoint_from: UBERON:0002036 ! striated muscle tissue + +[Term] +id: UBERON:0001136 +name: mesothelium +def: "Simple squamous epithelium of mesodermal origin which lines serous membranes. Examples: mesothelium of pleura, mesothelium of peritoneum[FMA]. Wikipedia: The mesothelium is a membrane that forms the lining of several body cavities: the pleura (thoracal cavity), peritoneum (abdominal cavity including the mesentery) and pericardium (heart sac). Mesothelial tissue also surrounds the male internal reproductive organs (the tunica vaginalis testis) and covers the internal reproductive organs of women (the tunica serosa uteri)." [FMA:14074, http://en.wikipedia.org/wiki/Mesothelium] +subset: uberon_slim +xref: AEO:0000111 +xref: BTO:0002422 +xref: CALOHA:TS-1183 +xref: EHDAA2_RETIRED:0003111 +xref: EHDAA:2331 +xref: EHDAA:2349 +xref: EHDAA:295 +xref: EHDAA:6073 +xref: EHDAA:640 +xref: EHDAA:646 +xref: EMAPA:32856 +xref: FMA:14074 +xref: http://en.wikipedia.org/wiki/Mesothelium +xref: http://linkedlifedata.com/resource/umls/id/C0086610 +xref: http://www.snomedbrowser.com/Codes/Details/361918002 +xref: MA:0000565 +xref: NCIT:C33105 +xref: UMLS:C0086610 {source="ncithesaurus:Mesothelium"} +is_a: UBERON:0000487 ! simple squamous epithelium +is_a: UBERON:0012275 ! meso-epithelium +intersection_of: UBERON:0000487 ! simple squamous epithelium +intersection_of: develops_from UBERON:0000926 ! mesoderm +intersection_of: part_of UBERON:0000042 ! serous membrane +relationship: part_of UBERON:0000042 ! serous membrane + +[Term] +id: UBERON:0001137 +name: dorsum +def: "A major subdivision of an organism that is the entire part of the organism dorsal to a horizontal plane and bounded on one side by the same transverse plane. In vertebrares this includes the vertebral column.." [BSPO:0000063, http://en.wikipedia.org/wiki/Dorsum_(anatomy), UBERONREF:0000006] +subset: efo_slim +subset: uberon_slim +synonym: "back" EXACT [FMA:14181] +synonym: "back of body proper" EXACT [FMA:14181] +synonym: "dorsal part of organism" EXACT [] +xref: BTO:0001713 +xref: CALOHA:TS-2223 +xref: Dorsum:(anatomy) +xref: EFO:0001405 +xref: FMA:14181 +xref: GAID:30 +xref: galen:Back +xref: http://linkedlifedata.com/resource/umls/id/C0004600 +xref: http://www.snomedbrowser.com/Codes/Details/123961009 +xref: MESH:A01.176 +xref: NCIT:C13062 +xref: OpenCyc:Mx4rvVkEU5wpEbGdrcN5Y29ycA +xref: UMLS:C0004600 {source="ncithesaurus:Back"} +is_a: UBERON:0000475 ! organism subdivision + +[Term] +id: UBERON:0001138 +name: superior mesenteric vein +def: "In anatomy, the superior mesenteric vein (SMV) is a blood vessel that drains blood from the small intestine. At its termination behind the neck of the pancreas, the SMV combines with the splenic vein to form the hepatic portal vein. The SMV lies to the right of the similarly named artery, the superior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]." [http://en.wikipedia.org/wiki/Superior_mesenteric_vein] +subset: uberon_slim +synonym: "upper mesenteric vein" RELATED [BTO:0002783] +synonym: "vena mesenterica superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_mesenteric_vein] +xref: BTO:0002783 +xref: EHDAA2:0001951 +xref: EHDAA:5414 +xref: EMAPA:18643 +xref: FMA:14332 +xref: http://en.wikipedia.org/wiki/Superior_mesenteric_vein +xref: http://linkedlifedata.com/resource/umls/id/C0226742 +xref: http://www.snomedbrowser.com/Codes/Details/278031001 +xref: MA:0002179 +xref: NCIT:C33687 +xref: OpenCyc:Mx4rwFjmM5wpEbGdrcN5Y29ycA +xref: UMLS:C0226742 {source="ncithesaurus:Superior_Mesenteric_Vein"} +xref: VHOG:0000552 +is_a: UBERON:0005617 ! mesenteric vein +intersection_of: UBERON:0005617 ! mesenteric vein +intersection_of: drains UBERON:0002108 ! small intestine +relationship: develops_from UBERON:0005487 {source="Vitelline:vein"} ! vitelline vein +relationship: drains UBERON:0002108 ! small intestine +relationship: part_of UBERON:0005806 ! portal system + +[Term] +id: UBERON:0001139 +name: common iliac vein +def: "A vein that drains the pelvis and lower limbs into the inferior vena cava." [http://en.wikipedia.org/wiki/Common_iliac_vein, MURDOCH:403] +subset: uberon_slim +synonym: "common iliac venous tree" EXACT [] +synonym: "vena iliaca communis" RELATED LATIN [http://en.wikipedia.org/wiki/Common_iliac_vein] +xref: EMAPA:17874 +xref: FMA:14333 +xref: galen:CommonIliacVein +xref: http://en.wikipedia.org/wiki/Common_iliac_vein +xref: http://linkedlifedata.com/resource/umls/id/C0226758 +xref: http://www.snomedbrowser.com/Codes/Details/181398004 +xref: MA:0002143 +xref: NCIT:C32359 +xref: OpenCyc:Mx4rv92CGZwpEbGdrcN5Y29ycA +xref: UMLS:C0226758 {source="ncithesaurus:Common_Iliac_Vein"} +is_a: UBERON:0005610 {source="MA"} ! iliac vein +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0001072 {source="FMA-abduced-lr"} ! posterior vena cava +relationship: part_of UBERON:0001072 ! posterior vena cava + +[Term] +id: UBERON:0001140 +name: renal vein +def: "Either of the pair of major vessels which arise from the renal hilus and return blood from the kidneys, suprarenal gland and the ureter to the inferior vena cava." [ISBN:0-683-40008-8, MGI:csmith, MP:0011323] +subset: pheno_slim +subset: uberon_slim +synonym: "kidney vein" EXACT [OBOL:automatic] +synonym: "renal venous tree" EXACT [] +synonym: "vein of kidney" EXACT [OBOL:automatic] +synonym: "venae renales" RELATED LATIN [http://en.wikipedia.org/wiki/Renal_vein] +xref: BTO:0002681 +xref: EHDAA2:0001602 +xref: EHDAA:8722 +xref: EMAPA:28376 +xref: FMA:14334 +xref: GAID:544 +xref: galen:RenalVein +xref: http://linkedlifedata.com/resource/umls/id/C0035092 +xref: http://www.snomedbrowser.com/Codes/Details/116358006 +xref: MA:0002210 +xref: MESH:D012082 +xref: NCIT:C33462 +xref: OpenCyc:Mx4rvdUXKJwpEbGdrcN5Y29ycA +xref: Renal:vein +xref: UMLS:C0035092 {source="ncithesaurus:Renal_Vein"} +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0002113 ! kidney +relationship: drains UBERON:0002113 ! kidney +relationship: part_of UBERON:0001072 ! posterior vena cava +relationship: tributary_of UBERON:0001072 ! posterior vena cava + +[Term] +id: UBERON:0001141 +name: right renal vein +def: "A renal vein that drains the right kidney" [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +xref: EMAPA:37381 {source="MA:th"} +xref: FMA:14335 +xref: http://linkedlifedata.com/resource/umls/id/C0508000 +xref: http://www.snomedbrowser.com/Codes/Details/116357001 +xref: MA:0002212 +xref: NCIT:C52695 +xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvdUXKJwpEbGdrcN5Y29ycA +xref: UMLS:C0508000 {source="ncithesaurus:Right_Renal_Vein"} +is_a: UBERON:0001140 ! renal vein +intersection_of: UBERON:0001140 ! renal vein +intersection_of: drains UBERON:0004539 ! right kidney +relationship: drains UBERON:0004539 ! right kidney + +[Term] +id: UBERON:0001142 +name: left renal vein +def: "A renal vein that drains the left kidney" [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +xref: EMAPA:37166 {source="MA:th"} +xref: FMA:14336 +xref: http://linkedlifedata.com/resource/umls/id/C0508001 +xref: http://www.snomedbrowser.com/Codes/Details/116356005 +xref: MA:0002211 +xref: NCIT:C52693 +xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvdUXKJwpEbGdrcN5Y29ycA +xref: UMLS:C0508001 {source="ncithesaurus:Left_Renal_Vein"} +is_a: UBERON:0001140 ! renal vein +intersection_of: UBERON:0001140 ! renal vein +intersection_of: drains UBERON:0004538 ! left kidney +relationship: drains UBERON:0004538 ! left kidney + +[Term] +id: UBERON:0001143 +name: hepatic vein +def: "Vein that carries blood away from the liver[ZFA]." [http://en.wikipedia.org/wiki/Hepatic_vein, https://sourceforge.net/tracker/?func=detail&aid=3565355&group_id=76834&atid=1205376, ZFA:0000670] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "hepatic veins" RELATED PLURAL [] +synonym: "liver vein" EXACT [OBOL:automatic] +synonym: "vein of liver" EXACT [OBOL:automatic] +synonym: "vena hepatica" EXACT LATIN [] +synonym: "venae hepaticae" RELATED LATIN [http://en.wikipedia.org/wiki/Hepatic_vein] +xref: AAO:0010216 +xref: EMAPA:19221 +xref: FMA:14337 +xref: GAID:534 +xref: galen:HepaticVein +xref: Hepatic:vein +xref: http://linkedlifedata.com/resource/umls/id/C0019155 +xref: http://www.snomedbrowser.com/Codes/Details/278191001 +xref: MA:0003015 +xref: MESH:D006503 +xref: NCIT:C32736 +xref: OpenCyc:Mx4rv5GivJwpEbGdrcN5Y29ycA +xref: TAO:0000670 +xref: UMLS:C0019155 {source="ncithesaurus:Hepatic_Vein"} +xref: XAO:0000387 +xref: ZFA:0000670 +is_a: UBERON:0013126 ! vein of abdomen +is_a: UBERON:0015796 ! liver blood vessel +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0002107 ! liver +disjoint_from: UBERON:0001639 ! hepatic portal vein +relationship: drains UBERON:0002107 ! liver +relationship: part_of UBERON:0001072 ! posterior vena cava +relationship: part_of UBERON:0006877 ! vasculature of liver +relationship: tributary_of UBERON:0001072 {source="FMA-abduced-lr"} ! posterior vena cava + +[Term] +id: UBERON:0001144 +name: testicular vein +def: "A vein that carries deoxygenated blood from a single male gonad. It is the male equivalent of the ovarian vein, and is the venous counterpart of the testicular artery. It is a paired vein, with one supplying each testis." [http://en.wikipedia.org/wiki/Testicular_vein, http://orcid.org/0000-0002-6601-2165, https://sourceforge.net/tracker/?func=detail&aid=3220553&group_id=76834&atid=1205376] +subset: uberon_slim +synonym: "male gonadal vein" EXACT [http://en.wikipedia.org/wiki/Testicular_vein] +synonym: "spermatic vein" EXACT [http://en.wikipedia.org/wiki/Testicular_vein] +synonym: "testicle vein" EXACT [OBOL:automatic] +synonym: "testicular venous tree" EXACT [http://en.wikipedia.org/wiki/Testicular_vein] +synonym: "vein of testicle" EXACT [OBOL:automatic] +synonym: "vena tesicularis" RELATED [BTO:0002678] +synonym: "vena testicularis dextra" RELATED LATIN [http://en.wikipedia.org/wiki/Testicular_vein] +synonym: "vena testicularis sinistra" RELATED LATIN [http://en.wikipedia.org/wiki/Testicular_vein] +synonym: "venae spermaticae" RELATED LATIN [http://en.wikipedia.org/wiki/Testicular_vein] +xref: BTO:0002678 +xref: EMAPA:18647 +xref: FMA:14344 +xref: http://linkedlifedata.com/resource/umls/id/C0226718 +xref: http://www.snomedbrowser.com/Codes/Details/264496006 +xref: MA:0002218 +xref: MA:0002234 +xref: NCIT:C53050 +xref: OpenCyc:Mx4rv1WIHpwpEbGdrcN5Y29ycA +xref: Testicular:vein +xref: UMLS:C0226718 {source="ncithesaurus:Spermatic_Vein"} +is_a: UBERON:0001638 ! vein +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0000473 ! testis +relationship: connected_to UBERON:0001072 ! posterior vena cava +relationship: connected_to UBERON:0001330 ! pampiniform plexus +relationship: drains UBERON:0000473 ! testis +relationship: in_lateral_side_of UBERON:0000468 ! multicellular organism +relationship: sexually_homologous_to UBERON:0001145 ! ovarian vein + +[Term] +id: UBERON:0001145 +name: ovarian vein +def: "A vein that carries deoxygenated blood from its corresponding ovary to inferior vena cava or one of its tributaries." [http://en.wikipedia.org/wiki/Ovarian_vein] +subset: uberon_slim +synonym: "female reproductive system gonad vein" EXACT [OBOL:automatic] +synonym: "female reproductive system gonada vein" EXACT [OBOL:automatic] +synonym: "gonad of female reproductive system vein" EXACT [OBOL:automatic] +synonym: "gonada of female reproductive system vein" EXACT [OBOL:automatic] +synonym: "ovary vein" EXACT [OBOL:automatic] +synonym: "vein of female reproductive system gonad" EXACT [OBOL:automatic] +synonym: "vein of female reproductive system gonada" EXACT [OBOL:automatic] +synonym: "vein of gonad of female reproductive system" EXACT [OBOL:automatic] +synonym: "vein of gonada of female reproductive system" EXACT [OBOL:automatic] +synonym: "vein of ovary" EXACT [OBOL:automatic] +synonym: "vena ovarica dextra" RELATED LATIN [http://en.wikipedia.org/wiki/Ovarian_vein] +synonym: "vena ovarica sinistra" RELATED LATIN [http://en.wikipedia.org/wiki/Ovarian_vein] +xref: EMAPA:18644 +xref: FMA:14346 +xref: http://linkedlifedata.com/resource/umls/id/C0226720 +xref: http://www.snomedbrowser.com/Codes/Details/278193003 +xref: MA:0002186 +xref: NCIT:C53058 +xref: OpenCyc:Mx4rvrST5ZwpEbGdrcN5Y29ycA +xref: Ovarian:vein +xref: UMLS:C0226720 {source="ncithesaurus:Ovarian_Vein"} +is_a: UBERON:0001638 ! vein +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0000992 ! ovary +relationship: drains UBERON:0000992 ! ovary +relationship: in_lateral_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0001146 +name: suprarenal vein +def: "A vein that drains the adrenal gland." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/mouse-anatomy-ontology/issues/110] +subset: uberon_slim +synonym: "adrenal vein" RELATED [MA:0002081] +xref: EHDAA2:0001966 +xref: EHDAA:8731 +xref: FMA:14348 +xref: http://linkedlifedata.com/resource/umls/id/C0226717 +xref: http://www.snomedbrowser.com/Codes/Details/278194009 +xref: MA:0002081 +xref: MA:0002229 +xref: NCIT:C53129 +xref: Suprarenal:vein +xref: UMLS:C0226717 {source="ncithesaurus:Suprarenal_Vein"} +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0002369 ! adrenal gland +relationship: drains UBERON:0002369 ! adrenal gland + +[Term] +id: UBERON:0001148 +name: median nerve +def: "A nerve of the arm that originates from the brachial plexus and is formed from parts of the medial and lateral cords of the brachial plexus, and continues down the arm to enter the forearm with the brachial artery. It originates from the brachial plexus with roots from C5, C6, C7, C8 & T1." [http://en.wikipedia.org/wiki/Median_nerve] +comment: The median nerve is the only nerve that passes through the carpal tunnel, where it may be compressed to cause carpal tunnel syndrome. [WP] +subset: uberon_slim +synonym: "nervus medianus" RELATED LATIN [http://en.wikipedia.org/wiki/Median_nerve] +xref: EHDAA2:0001086 +xref: EHDAA:5648 +xref: EMAPA:17277 +xref: FMA:14385 +xref: GAID:843 +xref: http://linkedlifedata.com/resource/umls/id/C0025058 +xref: http://www.snomedbrowser.com/Codes/Details/181010001 +xref: MA:0001168 +xref: Median:nerve +xref: MESH:D008475 +xref: NCIT:C52815 +xref: OpenCyc:Mx4rwF4HF5wpEbGdrcN5Y29ycA +xref: UMLS:C0025058 {source="ncithesaurus:Median_Nerve"} +is_a: UBERON:0003433 ! arm nerve +relationship: branching_part_of UBERON:0001814 ! brachial nerve plexus +relationship: part_of UBERON:0001814 ! brachial nerve plexus + +[Term] +id: UBERON:0001149 +name: bare area of liver +def: "A large triangular surface of the liver devoid of peritoneal covering." [http://en.wikipedia.org/wiki/Bare_area_of_the_liver] +synonym: "area nuda" RELATED [http://en.wikipedia.org/wiki/Bare_area_of_the_liver] +synonym: "area nuda (hepar)" EXACT [] +synonym: "area nuda hepatis" EXACT [] +synonym: "bare area" RELATED [http://en.wikipedia.org/wiki/Bare_area_of_the_liver] +synonym: "hepatic bare area" RELATED [EMAPA:17945] +synonym: "liver bare area" EXACT [] +xref: EMAPA:17945 +xref: FMA:14480 +xref: http://en.wikipedia.org/wiki/Bare_area_of_the_liver +xref: http://www.snomedbrowser.com/Codes/Details/279965008 +xref: MA:0000359 +is_a: UBERON:0000466 ! immaterial anatomical entity +relationship: part_of UBERON:0001114 ! right lobe of liver + +[Term] +id: UBERON:0001150 +name: body of pancreas +def: "The body of the pancreas is a subsection of the pancreas organ in the human body. It is somewhat prismatic in shape, and has three surfaces: anterior, posterior, and inferior. It is at the same level as the transpyloric plane. [WP,unvetted]." [http://en.wikipedia.org/wiki/Body_of_pancreas] +subset: uberon_slim +synonym: "corpus pancreatis" RELATED LATIN [http://en.wikipedia.org/wiki/Body_of_pancreas] +synonym: "pancreas body" EXACT [] +synonym: "pancreas corpus" RELATED [] +synonym: "pancreatic body" EXACT [] +xref: EHDAA2:0001368 +xref: EHDAA:9178 +xref: EMAPA:17504 +xref: FMA:14518 +xref: http://en.wikipedia.org/wiki/Body_of_pancreas +xref: http://linkedlifedata.com/resource/umls/id/C0227582 +xref: http://www.snomedbrowser.com/Codes/Details/362202004 +xref: MA:0000121 +xref: NCIT:C12270 +xref: UMLS:C0227582 {source="ncithesaurus:Body_of_the_Pancreas"} +xref: VHOG:0000451 +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0001264 ! pancreas + +[Term] +id: UBERON:0001151 +name: tail of pancreas +def: "The tail of the pancreas, located anatomically left near the hilum of the spleen, is not simply an anatomical distinction. The tail is the only part of the pancreas which contains Pancreatic Polypeptide (PP) cells, which are responsible for secreting pancreatic polypeptide to coordinate exocrine and islet enzyme release. PP cells are found in the tail's periphery. Beta cells and delta cells are found in the central part of the tail as with the rest of the pancreas. The cells described above are located exclusively in the islet cells; their secretions reach exocrine portions of the pancreas via the capillary network surrounding the islet cell populations. [WP,unvetted]." [http://en.wikipedia.org/wiki/Tail_of_pancreas] +subset: uberon_slim +synonym: "cauda pancreatis" RELATED LATIN [http://en.wikipedia.org/wiki/Tail_of_pancreas] +synonym: "left extremity of pancreas" EXACT [FMA:14519] +synonym: "pancreas tail" EXACT [] +synonym: "pancreatic tail" EXACT [FMA:14519] +xref: EHDAA2:0001390 +xref: EMAPA:17511 +xref: FMA:14519 +xref: http://en.wikipedia.org/wiki/Tail_of_pancreas +xref: http://linkedlifedata.com/resource/umls/id/C0227590 +xref: http://www.snomedbrowser.com/Codes/Details/245382003 +xref: MA:0000123 +xref: NCIT:C12271 +xref: UMLS:C0227590 {source="ncithesaurus:Tail_of_the_Pancreas"} +xref: VHOG:0000452 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: develops_from UBERON:0009708 {source="EHDAA2"} ! dorsal pancreas +relationship: part_of UBERON:0001264 {source="FMA"} ! pancreas + +[Term] +id: UBERON:0001152 +name: cystic duct +def: "the tubular structure that conducts gall bladder contents from the gall bladder to the common bile duct" [ISBN:0-683-40008-8, MP:0009493] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "ductus cysticus" RELATED LATIN [http://en.wikipedia.org/wiki/Cystic_duct] +xref: Cystic:duct +xref: EHDAA2:0000333 +xref: EHDAA:3045 +xref: EMAPA:16841 +xref: FMA:14539 +xref: GAID:290 +xref: galen:CysticDuct +xref: http://linkedlifedata.com/resource/umls/id/C0010672 +xref: http://www.snomedbrowser.com/Codes/Details/245398005 +xref: MA:0000355 +xref: MESH:A03.159.183.419 +xref: NCIT:C32421 +xref: OpenCyc:Mx4rveBeC5wpEbGdrcN5Y29ycA +xref: TAO:0005166 +xref: UMLS:C0010672 {source="ncithesaurus:Cystic_Duct"} +xref: VHOG:0000213 +xref: ZFA:0005166 +is_a: UBERON:0003703 {source="FMA"} ! extrahepatic bile duct +intersection_of: UBERON:0000058 ! duct +intersection_of: continuous_with UBERON:0001174 ! common bile duct +intersection_of: continuous_with UBERON:0002110 ! gall bladder +disjoint_from: UBERON:0005171 ! hepatic duct +relationship: channels_into UBERON:0001174 ! common bile duct +relationship: continuous_with UBERON:0001174 ! common bile duct +relationship: continuous_with UBERON:0002110 ! gall bladder +relationship: develops_from UBERON:0005604 {source="EHDAA2"} ! extrahepatic part of hepatic duct + +[Term] +id: UBERON:0001153 +name: caecum +def: "A pouch in the digestive tract that connects the ileum with the ascending colon of the large intestine. It is separated from the ileum by the ileocecal valve, and is the beginning of the large intestine. It is also separated from the colon by the cecocolic junction." [http://en.wikipedia.org/wiki/Cecum] +comment: Taxon notes: in some herbivorous lizards, a cecum is present between small and large intestines[Kardong] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "blind intestine" RELATED [BTO:0000166] +synonym: "blindgut" RELATED [BTO:0000166] +synonym: "caeca" NARROW PLURAL [NCBITaxon:8782] +synonym: "caecum" EXACT [VHOG:0001559] +synonym: "ceca" NARROW PLURAL [NCBITaxon:8782] +synonym: "cecum" EXACT [FMA:14541] +synonym: "intestinum caecum" RELATED [BTO:0000166] +synonym: "intestinum crassum caecum" EXACT [] +synonym: "intestinum crassum cecum" RELATED [BTO:0000166] +xref: BTO:0000166 +xref: CALOHA:TS-0122 +xref: EFO:0000850 +xref: EHDAA2:0000206 +xref: EHDAA:3913 +xref: EMAPA:35197 +xref: EV:0100397 +xref: FMA:14541 +xref: GAID:307 +xref: galen:Cecum +xref: http://en.wikipedia.org/wiki/Cecum +xref: http://linkedlifedata.com/resource/umls/id/C0007531 +xref: http://www.snomedbrowser.com/Codes/Details/181256004 +xref: MA:0000334 +xref: MESH:A03.492.411.495.209 +xref: MIAA:0000288 +xref: NCIT:C12381 +xref: OpenCyc:Mx4rve6u4JwpEbGdrcN5Y29ycA +xref: UMLS:C0007531 {source="ncithesaurus:Cecum"} +xref: VHOG:0001559 +is_a: UBERON:0009854 ! digestive tract diverticulum +relationship: continuous_with UBERON:0001156 {source="Wikipedia"} ! ascending colon +relationship: contributes_to_morphology_of UBERON:0000059 ! large intestine +relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut +relationship: part_of UBERON:0001155 {source="EHDAA2"} ! colon + +[Term] +id: UBERON:0001154 +name: vermiform appendix +def: "A blind-ended tube connected to the cecum, from which it develops embryologically[WP]." [http://en.wikipedia.org/wiki/Vermiform_appendix] +subset: efo_slim +subset: organ_slim +subset: uberon_slim +synonym: "apex of caecum" RELATED [EMAPA:35140] +synonym: "apex of cecum" RELATED [VHOG:0001306] +synonym: "appendix" EXACT [] +synonym: "appendix vermiformis" EXACT LATIN [FMA:14542, FMA:TA] +synonym: "appendix vermiformis" RELATED LATIN [http://en.wikipedia.org/wiki/Vermiform_appendix] +synonym: "caecal appendix" EXACT [] +synonym: "cecal appendix" EXACT [] +synonym: "vermix" BROAD [] +xref: BTO:0000084 +xref: CALOHA:TS-1267 +xref: EFO:0000849 +xref: EHDAA2:0000588 +xref: EMAPA:35140 +xref: EV:0100076 +xref: EV:0100080 +xref: FMA:14542 +xref: GAID:308 +xref: galen:AppendixVermiformis +xref: http://linkedlifedata.com/resource/umls/id/C0003617 +xref: http://www.snomedbrowser.com/Codes/Details/181255000 +xref: MA:0001540 +xref: MAT:0000287 +xref: MESH:A03.492.411.495.209.290 +xref: MIAA:0000287 +xref: NCIT:C12380 +xref: OpenCyc:Mx4rvVjGgJwpEbGdrcN5Y29ycA +xref: UMLS:C0003617 {source="ncithesaurus:Vermiform_Appendix"} +xref: Vermiform:appendix +xref: VHOG:0001306 +is_a: UBERON:0013765 ! digestive system element +relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut +relationship: part_of UBERON:0001153 {source="MA"} ! caecum + +[Term] +id: UBERON:0001155 +name: colon +def: "Last portion of the large intestine before it becomes the rectum." [http://en.wikipedia.org/wiki/Colon_(anatomy), http://orcid.org/0000-0002-6601-2165, ZFIN:curator] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "hindgut" RELATED [] +synonym: "large bowel" EXACT [] +synonym: "posterior intestine" NARROW [] +xref: AAO:0010400 +xref: BTO:0000269 +xref: CALOHA:TS-0158 +xref: Colon:(anatomy) +xref: EFO:0000361 +xref: EMAPA:18939 +xref: EV:0100079 +xref: FMA:14543 +xref: GAID:309 +xref: galen:Colon +xref: http://linkedlifedata.com/resource/umls/id/C0009368 +xref: http://www.snomedbrowser.com/Codes/Details/302508007 +xref: MA:0000335 +xref: MAP:0000001 +xref: MAT:0000526 +xref: MESH:A03.492.411.495.356 +xref: NCIT:C12382 +xref: OpenCyc:Mx4rvgLEM5wpEbGdrcN5Y29ycA +xref: TAO:0000706 +xref: UMLS:C0009368 {source="ncithesaurus:Colon"} +xref: VHOG:0000648 +xref: XAO:0000243 +xref: ZFA:0000706 +is_a: UBERON:0004921 {order="3", source="cjm"} ! subdivision of digestive tract +relationship: contributes_to_morphology_of UBERON:0000059 ! large intestine +relationship: part_of UBERON:0000059 {source="FMA"} ! large intestine + +[Term] +id: UBERON:0001156 +name: ascending colon +def: "Section of colon which is distal to the cecum and proximal to the transversecolon.[FMA,modified]" [FMA:14545, http://en.wikipedia.org/wiki/Ascending_colon] +subset: efo_slim +subset: uberon_slim +synonym: "colon ascendens" EXACT LATIN [http://en.wikipedia.org/wiki/Ascending_colon] +synonym: "spiral colon" RELATED SENSU [http://en.wikipedia.org/wiki/Spiral_colon] +xref: Ascending:colon +xref: BTO:0000270 +xref: CALOHA:TS-0057 +xref: EFO:0000843 +xref: EMAPA:35151 +xref: FMA:14545 +xref: galen:AscendingColon +xref: http://linkedlifedata.com/resource/umls/id/C0227375 +xref: http://www.snomedbrowser.com/Codes/Details/362162009 +xref: MA:0001541 +xref: MAT:0000311 +xref: MIAA:0000311 +xref: NCIT:C12265 +xref: OpenCyc:Mx4rv3H0FZwpEbGdrcN5Y29ycA +xref: UMLS:C0227375 {source="ncithesaurus:Ascending_Colon"} +is_a: UBERON:0000168 {source="FMA"} ! proximal-distal subdivision of colon +relationship: continuous_with UBERON:0001157 ! transverse colon +relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut + +[Term] +id: UBERON:0001157 +name: transverse colon +def: "The proximal-distal subdivision of colon that runs transversely across the upper part of the abdomen, from the right to the left colic flexure. Continuous with the descending colon[BTO,modified]." [BTO:0000272, http://en.wikipedia.org/wiki/Transverse_colon] +subset: efo_slim +subset: uberon_slim +synonym: "colon transversum" EXACT LATIN [http://en.wikipedia.org/wiki/Transverse_colon] +xref: BTO:0000272 +xref: CALOHA:TS-2052 +xref: EFO:0000844 +xref: EMAPA:35880 +xref: FMA:14546 +xref: galen:TransverseColon +xref: http://linkedlifedata.com/resource/umls/id/C0227386 +xref: http://www.snomedbrowser.com/Codes/Details/362163004 +xref: MA:0001543 +xref: MAT:0000312 +xref: MIAA:0000312 +xref: NCIT:C12385 +xref: OpenCyc:Mx4rvg7qyJwpEbGdrcN5Y29ycA +xref: Transverse:colon +xref: UMLS:C0227386 {source="ncithesaurus:Transverse_Colon"} +is_a: UBERON:0000168 {source="FMA"} ! proximal-distal subdivision of colon +relationship: continuous_with UBERON:0001158 ! descending colon +relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut + +[Term] +id: UBERON:0001158 +name: descending colon +def: "The portion of the colon between the left colic flexure and the sigmoid colon at the pelvic brim; the portion of the descending colon lying in the left iliac fossa is sometimes called the iliac colon." [BTO:0000641] +subset: efo_slim +subset: uberon_slim +synonym: "colon descendens" EXACT LATIN [http://en.wikipedia.org/wiki/Descending_colon] +xref: BTO:0000641 +xref: CALOHA:TS-2010 +xref: Descending:colon +xref: EFO:0000845 +xref: EMAPA:35285 +xref: FMA:14547 +xref: galen:DescendingColon +xref: http://linkedlifedata.com/resource/umls/id/C0227389 +xref: http://www.snomedbrowser.com/Codes/Details/362165006 +xref: MA:0001542 +xref: MAT:0000313 +xref: MIAA:0000313 +xref: NCIT:C12268 +xref: OpenCyc:Mx4rwHsNhpwpEbGdrcN5Y29ycA +xref: UMLS:C0227389 {source="ncithesaurus:Descending_Colon"} +is_a: UBERON:0000168 {source="FMA"} ! proximal-distal subdivision of colon +relationship: continuous_with UBERON:0001159 ! sigmoid colon +relationship: develops_from UBERON:0001046 {source="Wikipedia"} ! hindgut + +[Term] +id: UBERON:0001159 +name: sigmoid colon +def: "The part of the large intestine that is closest to the rectum and anus. It forms a loop that averages about 40 cm. in length, and normally lies within the pelvis, but on account of its freedom of movement it is liable to be displaced into the abdominal cavity." [http://en.wikipedia.org/wiki/Sigmoid_colon] +subset: efo_slim +subset: uberon_slim +synonym: "colon sigmoideum" RELATED LATIN [http://en.wikipedia.org/wiki/Sigmoid_colon] +synonym: "pelvic colon" RELATED [] +synonym: "sigmoid colon" RELATED [] +synonym: "sigmoid flexure" RELATED [] +xref: BTO:0000645 +xref: CALOHA:TS-2044 +xref: EFO:0000846 +xref: EMAPA:36391 +xref: FMA:14548 +xref: galen:SigmoidColon +xref: http://linkedlifedata.com/resource/umls/id/C0227391 +xref: http://linkedlifedata.com/resource/umls/id/C0682612 +xref: http://www.snomedbrowser.com/Codes/Details/362166007 +xref: MAT:0000314 +xref: MESH:A03.492.411.495.356.668 +xref: MIAA:0000314 +xref: NCIT:C12384 +xref: NCIT:C33550 +xref: OpenCyc:Mx4rwHX_-5wpEbGdrcN5Y29ycA +xref: Sigmoid:colon +xref: UMLS:C0227391 {source="ncithesaurus:Sigmoid_Colon"} +xref: UMLS:C0682612 {source="ncithesaurus:Sigmoid_Flexure"} +is_a: UBERON:0000168 {source="FMA"} ! proximal-distal subdivision of colon +relationship: continuous_with UBERON:0001052 ! rectum +relationship: develops_from UBERON:0001046 {source="Wikipedia"} ! hindgut + +[Term] +id: UBERON:0001160 +name: fundus of stomach +def: "The fundus is the portion of the stomach that lies above the cardiac notch, and contains the fundic glands[GO, Kardong]." [GO:0014825, http://en.wikipedia.org/wiki/Fundus_(stomach), ISBN:0073040584] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "fundus gastricus" RELATED [BTO:0000502] +synonym: "fundus gastricus (ventricularis)" EXACT [] +synonym: "fundus gastricus ventricularis" RELATED [BTO:0000502] +synonym: "fundus ventricularis" RELATED [BTO:0000502] +synonym: "fundus ventriculi" RELATED [BTO:0000502] +synonym: "gastric fundus" EXACT [] +synonym: "stomach fundus" EXACT [] +xref: BTO:0000502 +xref: EFO:0002554 +xref: EHDAA2:0001919 +xref: EHDAA:4844 +xref: EMAPA:17886 +xref: FMA:14559 +xref: Fundus:(stomach) +xref: GAID:320 +xref: galen:GastricFundus +xref: http://linkedlifedata.com/resource/umls/id/C0017129 +xref: http://www.snomedbrowser.com/Codes/Details/362139007 +xref: MA:0001612 +xref: MESH:A03.492.766.419 +xref: NCIT:C12257 +xref: UMLS:C0017129 {source="ncithesaurus:Fundus_of_the_Stomach"} +xref: VHOG:0000421 +is_a: UBERON:0009870 ! zone of stomach +relationship: contributes_to_morphology_of UBERON:0000945 ! stomach +relationship: has_part UBERON:0010038 ! fundic gastric gland + +[Term] +id: UBERON:0001161 +name: body of stomach +def: "The body of stomach is the part of the stomach that lies between the fundus above and the pyloric antrum below; its boundaries are poorly defined[GO]." [GO:0014845, http://en.wikipedia.org/wiki/Body_of_stomach] +subset: uberon_slim +synonym: "corpus gastricum" RELATED [BTO:0000505] +synonym: "corpus gastricum" RELATED LATIN [http://en.wikipedia.org/wiki/Body_of_stomach] +synonym: "corpus gastricum (ventriculare)" EXACT [] +synonym: "corpus ventriculare" RELATED [BTO:0000505] +synonym: "corpus ventriculi" RELATED [BTO:0000505] +synonym: "gastric body" EXACT [] +synonym: "gastric corpus" RELATED [] +synonym: "stomach body" EXACT [] +xref: BTO:0000505 +xref: EMAPA:35810 +xref: FMA:14560 +xref: galen:GastricCorpus +xref: http://en.wikipedia.org/wiki/Body_of_stomach +xref: http://linkedlifedata.com/resource/umls/id/C0227230 +xref: http://www.snomedbrowser.com/Codes/Details/362140009 +xref: MA:0002559 +xref: NCIT:C12258 +xref: UMLS:C0227230 {source="ncithesaurus:Body_of_Stomach"} +is_a: UBERON:0009870 {source="FMA"} ! zone of stomach + +[Term] +id: UBERON:0001162 +name: cardia of stomach +alt_id: UBERON:0004712 +def: "The part of the stomach attached to the esophagus. The cardia begins immediately distal to the z-line of the gastroeosphageal junction, where the squamous epithelium of the esophagus gives way to the columnar epithelium of the gastrointestinal tract[WP]" [BTO:0000198, http://en.wikipedia.org/wiki/Cardia] +subset: pheno_slim +synonym: "antrum cardiacum" RELATED [http://en.wikipedia.org/wiki/Cardia] +synonym: "antrum cardiacum" RELATED LATIN [http://en.wikipedia.org/wiki/Cardia] +synonym: "cardiac antrum" RELATED [] +synonym: "cardiac orifice" RELATED [http://en.wikipedia.org/wiki/Cardia] +synonym: "cardiac region" RELATED [http://en.wikipedia.org/wiki/Cardia] +synonym: "cardial orifice" RELATED [http://en.wikipedia.org/wiki/Cardia] +synonym: "cardial part of stomach" EXACT [] +synonym: "gastric cardia" EXACT [] +synonym: "pars cardiaca (gaster)" EXACT [] +synonym: "pars cardiaca gastricae" EXACT LATIN [FMA:14561, FMA:TA] +synonym: "stomach cardiac region" EXACT [MA:0001609] +xref: BTO:0000198 +xref: EMAPA:35811 +xref: FMA:14561 +xref: GAID:319 +xref: http://en.wikipedia.org/wiki/Cardia +xref: http://linkedlifedata.com/resource/umls/id/C0007144 +xref: http://www.snomedbrowser.com/Codes/Details/362138004 +xref: MA:0001609 +xref: MESH:A03.492.766.163 +xref: NCIT:C12256 +xref: UMLS:C0007144 {source="ncithesaurus:Cardia"} +is_a: UBERON:0009870 ! zone of stomach +intersection_of: UBERON:0009870 ! zone of stomach +intersection_of: has_part UBERON:0008859 ! cardiac gastric gland +relationship: continuous_with UBERON:0001043 ! esophagus +relationship: continuous_with UBERON:0001161 ! body of stomach +relationship: contributes_to_morphology_of UBERON:0000945 ! stomach +relationship: has_part UBERON:0008859 ! cardiac gastric gland + +[Term] +id: UBERON:0001163 +name: lesser curvature of stomach +def: "The lesser curvature of the stomach, extending between the cardiac and pyloric orifices, forms the right or posterior border of the stomach. It descends as a continuation of the right margin of the esophagus in front of the fibers of the right crus of the diaphragm, and then, turning to the right, it crosses the first lumbar vertebra and ends at the pylorus. Nearer its pyloric than its cardiac end is a well-marked notch, the incisura angularis, which varies somewhat in position with the state of distension of the viscus; it serves to separate the stomach into a right and a left portion. The lesser curvature gives attachment to the two layers of the hepatogastric ligament, and between these two layers are the left gastric artery and the right gastric branch of the hepatic artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/Lesser_curvature_of_stomach] +subset: uberon_slim +synonym: "stomach lesser curvature" EXACT [] +xref: EMAPA:37754 {source="MA:th"} +xref: FMA:14572 +xref: galen:LesserCurvatureOfStomach +xref: http://en.wikipedia.org/wiki/Lesser_curvature_of_stomach +xref: http://linkedlifedata.com/resource/umls/id/C0227221 +xref: http://www.snomedbrowser.com/Codes/Details/362133008 +xref: MA:0001616 +xref: NCIT:C12261 +xref: UMLS:C0227221 {source="ncithesaurus:Lesser_Curvature"} +is_a: UBERON:0009870 {source="FMA"} ! zone of stomach + +[Term] +id: UBERON:0001164 +name: greater curvature of stomach +def: "The greater curvature of the stomach is directed mainly forward, and is four or five times as long as the lesser curvature. [WP,unvetted]." [http://en.wikipedia.org/wiki/Greater_curvature_of_stomach] +subset: uberon_slim +synonym: "stomach greater curvature" EXACT [] +xref: EMAPA:37753 {source="MA:th"} +xref: FMA:14574 +xref: galen:GreaterCurvatureOfStomach +xref: http://en.wikipedia.org/wiki/Greater_curvature_of_stomach +xref: http://linkedlifedata.com/resource/umls/id/C0227223 +xref: http://www.snomedbrowser.com/Codes/Details/362134002 +xref: MA:0001615 +xref: NCIT:C12262 +xref: UMLS:C0227223 {source="ncithesaurus:Greater_Curvature"} +is_a: UBERON:0009870 {source="FMA"} ! zone of stomach + +[Term] +id: UBERON:0001165 +name: pyloric antrum +def: "the area at the bottom of the stomach on the caudal side of the pyloric canal that contains gastrin-producing G cells, which stimulate acid production, and the luminal pH-sensitive population of somatostatin-producing D cells" [ISBN:0-683-40008-8, MP:0010790] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "antrum" BROAD [] +synonym: "antrum of stomach" EXACT [] +synonym: "antrum of Willis" RELATED [BTO:0001732] +synonym: "antrum pylori" RELATED [BTO:0001732] +synonym: "antrum pyloricum" RELATED LATIN [http://en.wikipedia.org/wiki/Pyloric_antrum] +synonym: "antrum pyloricum" RELATED [BTO:0001732] +synonym: "gastric antrum" RELATED [BTO:0001732] +synonym: "stomach antrum" RELATED [] +synonym: "stomach pyloric antrum" EXACT [] +xref: BTO:0001732 +xref: EFO:0002555 +xref: EMAPA:17891 +xref: FMA:14579 +xref: GAID:332 +xref: galen:PyloricAntrum +xref: http://linkedlifedata.com/resource/umls/id/C0034193 +xref: http://www.snomedbrowser.com/Codes/Details/362142001 +xref: MA:0001624 +xref: MESH:A03.492.766.716 +xref: NCIT:C12259 +xref: Pyloric:antrum +xref: UMLS:C0034193 {source="ncithesaurus:Antrum_Pylori"} +is_a: UBERON:0009870 {source="FMA"} ! zone of stomach +relationship: continuous_with UBERON:0001161 ! body of stomach +relationship: contributes_to_morphology_of UBERON:0001166 ! pylorus +relationship: part_of UBERON:0001166 {source="Wikipedia"} ! pylorus + +[Term] +id: UBERON:0001166 +name: pylorus +def: "the stomach tissue region surrounding and controlling the distal outlet of the stomach, which opens into the duodenum" [MGI:csmith, MP:0010785] +subset: pheno_slim +subset: uberon_slim +synonym: "pars pylorica" EXACT LATIN [] +synonym: "pars pylorica gastricae" EXACT LATIN [FMA:14581, FMA:TA] +synonym: "pyloric part of stomach" EXACT [] +synonym: "pyloric region" EXACT [] +synonym: "stomach pyloric region" EXACT [EHDAA2:0001580] +synonym: "valvula pylori" RELATED LATIN [http://en.wikipedia.org/wiki/Pylorus] +xref: BTO:0001146 +xref: EHDAA2:0001580 +xref: EHDAA:4860 +xref: EMAPA:17631 +xref: FMA:14581 +xref: GAID:333 +xref: galen:Pylorus +xref: http://en.wikipedia.org/wiki/Pylorus +xref: http://linkedlifedata.com/resource/umls/id/C0034196 +xref: http://www.snomedbrowser.com/Codes/Details/362143006 +xref: MA:0002560 +xref: MESH:A03.492.766.799 +xref: NCIT:C12260 +xref: UMLS:C0034196 {source="ncithesaurus:Pylorus"} +xref: VHOG:0000420 +is_a: UBERON:0009870 ! zone of stomach +intersection_of: UBERON:0009870 ! zone of stomach +intersection_of: has_part UBERON:0001165 ! pyloric antrum +intersection_of: has_part UBERON:0008858 ! pyloric canal +intersection_of: has_part UBERON:0008861 ! pyloric gastric gland +relationship: contributes_to_morphology_of UBERON:0000945 ! stomach +relationship: has_part UBERON:0001165 ! pyloric antrum +relationship: has_part UBERON:0008858 ! pyloric canal +relationship: has_part UBERON:0008861 ! pyloric gastric gland + +[Term] +id: UBERON:0001167 +name: wall of stomach +def: "the layered structure that makes up the stomach, typiclly consists of a serous coat, a muscular coat, a mucous membrane, and other tissue layers in between" [MGI:csmith, MP:0010783] +subset: pheno_slim +synonym: "anatomical wall of stomach" EXACT [OBOL:automatic] +synonym: "anatomical wall of ventriculus" EXACT [OBOL:automatic] +synonym: "gastric wall" EXACT [] +synonym: "stomach anatomical wall" EXACT [OBOL:automatic] +synonym: "stomach wall" EXACT [] +synonym: "ventriculus anatomical wall" EXACT [OBOL:automatic] +synonym: "ventriculus wall" EXACT [OBOL:automatic] +synonym: "wall of ventriculus" EXACT [OBOL:automatic] +xref: EMAPA:35826 +xref: FMA:14582 +xref: galen:WallOfStomach +xref: http://www.snomedbrowser.com/Codes/Details/279995000 +xref: MA:0002692 +is_a: UBERON:0000328 ! gut wall +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0000945 ! stomach +relationship: contributes_to_morphology_of UBERON:0000945 ! stomach +relationship: part_of UBERON:0000945 ! stomach + +[Term] +id: UBERON:0001168 +name: wall of small intestine +def: "An anatomical wall that is part of a small intestine [Automatically generated definition]." [OBOL:automatic] +synonym: "anatomical wall of small bowel" EXACT [OBOL:automatic] +synonym: "anatomical wall of small intestine" EXACT [OBOL:automatic] +synonym: "small bowel anatomical wall" EXACT [OBOL:automatic] +synonym: "small bowel wall" EXACT [OBOL:automatic] +synonym: "small intestinal wall" EXACT [] +synonym: "small intestine anatomical wall" EXACT [OBOL:automatic] +synonym: "small intestine wall" EXACT [] +synonym: "wall of small bowel" EXACT [OBOL:automatic] +xref: EMAPA:35785 +xref: FMA:14615 +xref: http://linkedlifedata.com/resource/umls/id/C1519375 +xref: MA:0002696 +xref: NCIT:C33573 +xref: UMLS:C1519375 {source="ncithesaurus:Small_Intestinal_Wall_Tissue"} +is_a: UBERON:0001262 ! wall of intestine +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0002108 ! small intestine +relationship: part_of UBERON:0002108 ! small intestine + +[Term] +id: UBERON:0001169 +name: wall of large intestine +def: "An anatomical wall that is part of a large intestine [Automatically generated definition]." [OBOL:automatic] +synonym: "anatomical wall of large intestine" EXACT [OBOL:automatic] +synonym: "large intestinal wall" EXACT [] +synonym: "large intestine anatomical wall" EXACT [OBOL:automatic] +synonym: "large intestine wall" EXACT [] +xref: EMAPA:35470 +xref: FMA:14619 +xref: MA:0002695 +is_a: UBERON:0001262 ! wall of intestine +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0000059 ! large intestine +relationship: part_of UBERON:0000059 ! large intestine + +[Term] +id: UBERON:0001170 +name: mesentery of small intestine +def: "The peritoneum responsible for connecting the jejunum and ileum (parts of the small intestine) to the back wall of the abdomen. Between the two sheets of peritoneum are blood vessels, lymph vessels, and nerves. This allows these parts of the small intestine to move relatively freely within the abdominopelvic cavity. The brain, however, cannot map sensation accurately, so sensation is usually referred to the midline, an example of referred pain[WP]." [http://en.wikipedia.org/wiki/Mesentery#Mesentery_.28proper.29] +synonym: "mesentery (proper)" EXACT [http://en.wikipedia.org/wiki/Mesentery] +synonym: "mesentery proper" EXACT [FMA:14643] +synonym: "small intestinal mesentery" EXACT [FMA:14643] +synonym: "small intestine mesentery" EXACT [OBOL:automatic] +xref: EMAPA:37745 {source="MA:th"} +xref: FMA:14643 +xref: http://www.snomedbrowser.com/Codes/Details/245456008 +xref: MA:0001555 +xref: Mesentery_.28proper.29 +is_a: UBERON:0001206 ! serosa of small intestine +is_a: UBERON:0004854 ! gastrointestinal system mesentery +is_a: UBERON:0007826 {source="FMA"} ! peritoneal mesentery +intersection_of: UBERON:0002095 ! mesentery +intersection_of: part_of UBERON:0002108 ! small intestine + +[Term] +id: UBERON:0001171 +name: portal lobule +def: "The triangular region on the periphery of the liver lobules that contain a bile duct and a terminal branch of the hepatic artery and portal vein, and may also include a lymphatic vessel." [MP:0008992] +subset: pheno_slim +xref: FMA:14653 +xref: http://linkedlifedata.com/resource/umls/id/C0682620 +xref: MA:0002498 +xref: NCIT:C33341 +xref: UMLS:C0682620 {source="ncithesaurus:Portal_Lobule"} +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0009911 {source="FMA"} ! lobule +relationship: contributes_to_morphology_of UBERON:0001280 ! liver parenchyma +relationship: part_of UBERON:0001280 {source="MA", source="MP"} ! liver parenchyma + +[Term] +id: UBERON:0001172 +name: hepatic acinus +def: "The functional unit of the liver, consisting of a mass of hepatocytes from adjacent liver lobules aligned around the hepatic arterioles and portal venules just as they anastomose into sinusoids." [http://orcid.org/0000-0002-6601-2165, http://www.vivo.colostate.edu/hbooks/pathphys/digestion/liver/histo_acinus.html] +synonym: "liver acinus" EXACT [] +synonym: "portal acinus" EXACT [] +xref: EMAPA:35497 +xref: FMA:14654 +xref: http://linkedlifedata.com/resource/umls/id/C0227519 +xref: http://www.snomedbrowser.com/Codes/Details/272214009 +xref: MA:0002496 +xref: NCIT:C32992 +xref: UMLS:C0227519 {source="ncithesaurus:Liver_Acinus"} +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0011858 ! acinus of exocrine gland +relationship: part_of UBERON:0001280 {source="cjm"} ! liver parenchyma + +[Term] +id: UBERON:0001173 +name: biliary tree +def: "A complex network of conduits that begins with the canals of Hering (intralobar bile duct) and progressively merges into a system of interlobular, septal, and major ducts which then coalesce to form the extrahepatic bile ducts, which finally deliver bile to the intestine, and in some species to the gallbladder." [https://doi.org/10.1002/ar.20664] +comment: The path in many species is as follows: Bile canaliculi -> Canals of Hering (intralobar bile duct) -> interlobular bile ducts -> intrahepatic bile ducts -> left and right hepatic ducts merge to form -> common hepatic duct *exits liver* and joins -> cystic duct (from gall bladder) forming -> common bile duct -> joins with pancreatic duct -> forming ampulla of Vater -> enters duodenum [WP] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "biliary tract" RELATED [MA:0001273] +xref: AAO:0011020 +xref: Biliary:tract +xref: EMAPA:35172 +xref: FMA:14665 +xref: http://linkedlifedata.com/resource/umls/id/C0005423 +xref: http://www.snomedbrowser.com/Codes/Details/181267003 +xref: UMLS:C0005423 {source="ncithesaurus:Biliary_Tract"} +xref: XAO:0000455 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0013765 ! digestive system element +intersection_of: UBERON:0000062 ! organ +intersection_of: composed_primarily_of UBERON:0002394 ! bile duct +intersection_of: part_of UBERON:0002294 ! biliary system +relationship: composed_primarily_of UBERON:0002394 ! bile duct +relationship: contributes_to_morphology_of UBERON:0002423 ! hepatobiliary system +relationship: develops_from UBERON:0004912 ! biliary bud +relationship: has_part UBERON:0001246 ! interlobular bile duct +relationship: has_part UBERON:0001282 ! intralobular bile duct +relationship: has_part UBERON:0003703 ! extrahepatic bile duct +relationship: part_of UBERON:0002294 ! biliary system + +[Term] +id: UBERON:0001174 +name: common bile duct +def: "the part of the biliary tree formed by the union of the cystic duct and the common hepatic duct" [MGI:csmith, MP:0009495] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "ductus choledochus" RELATED LATIN [http://en.wikipedia.org/wiki/Common_bile_duct] +synonym: "ductus choledochus (biliaris)" EXACT [] +xref: EHDAA2:0000303 +xref: EHDAA:3981 +xref: EMAPA:17201 +xref: FMA:14667 +xref: GAID:282 +xref: galen:CommonBileDuct +xref: http://en.wikipedia.org/wiki/Common_bile_duct +xref: http://linkedlifedata.com/resource/umls/id/C0009437 +xref: http://www.snomedbrowser.com/Codes/Details/362199009 +xref: MA:0001631 +xref: MESH:D003135 +xref: NCIT:C12698 +xref: TAO:0005165 +xref: UMLS:C0009437 {source="ncithesaurus:Common_Bile_Duct"} +xref: VHOG:0000214 +xref: ZFA:0005165 +is_a: UBERON:0003703 ! extrahepatic bile duct +relationship: channels_into UBERON:0001064 ! ventral pancreatic duct +relationship: continuous_with UBERON:0001152 ! cystic duct +relationship: continuous_with UBERON:0001175 ! common hepatic duct + +[Term] +id: UBERON:0001175 +name: common hepatic duct +def: "Predominantly extrahepatic bile duct which is formed by the junction of the right and left hepatic ducts, which are predominantly intrahepatic, and, in turn, joins the cystic duct to form the common bile duct[GAID]. The common hepatic duct is the duct formed by the convergence of the right hepatic duct (which drains bile from the right functional lobe of the liver) and the left hepatic duct (which drains bile from the left functional lobe of the liver). The common hepatic duct then joins the cystic duct coming from the gallbladder to form the common bile duct[WP]." [http://en.wikipedia.org/wiki/Common_hepatic_duct, ZFIN:curator] +subset: pheno_slim +subset: uberon_slim +synonym: "ductus hepaticus communis" RELATED LATIN [http://en.wikipedia.org/wiki/Common_hepatic_duct] +synonym: "hepatic duct" RELATED [] +xref: EMAPA:19101 +xref: FMA:14668 +xref: GAID:286 +xref: http://en.wikipedia.org/wiki/Common_hepatic_duct +xref: http://linkedlifedata.com/resource/umls/id/C0019149 +xref: http://www.snomedbrowser.com/Codes/Details/245403006 +xref: MA:0002660 +xref: MESH:D006500 +xref: NCIT:C32356 +xref: UMLS:C0019149 {source="ncithesaurus:Common_Hepatic_Duct"} +xref: VHOG:0000220 +is_a: UBERON:0003703 {source="FMA"} ! extrahepatic bile duct +relationship: channels_into UBERON:0001174 ! common bile duct +relationship: continuous_with UBERON:0001176 {source="Wikipedia"} ! right hepatic duct +relationship: continuous_with UBERON:0001177 {source="Wikipedia"} ! left hepatic duct +relationship: develops_from UBERON:0010081 ! future common hepatic duct +relationship: immediate_transformation_of UBERON:0010081 {evidence="definitional"} ! future common hepatic duct +relationship: part_of UBERON:0005604 {source="MA"} ! extrahepatic part of hepatic duct + +[Term] +id: UBERON:0001176 +name: right hepatic duct +def: "The duct that drains bile from the right half of the liver and joins the left hepatic duct to form the common hepatic duct." [http://www.medterms.com/script/main/art.asp?articlekey=26034] +synonym: "ductus hepaticus dexter" RELATED LATIN [] +xref: EHDAA2:0001727 +xref: EHDAA:3992 +xref: EMAPA:32797 +xref: FMA:14669 +xref: http://linkedlifedata.com/resource/umls/id/C0227557 +xref: http://www.snomedbrowser.com/Codes/Details/245401008 +xref: MA:0001639 +xref: NCIT:C33476 +xref: UMLS:C0227557 {source="ncithesaurus:Right_Hepatic_Duct"} +xref: VHOG:0000217 +is_a: UBERON:0003703 ! extrahepatic bile duct +intersection_of: UBERON:0003703 ! extrahepatic bile duct +intersection_of: continuous_with UBERON:0001114 ! right lobe of liver +relationship: continuous_with UBERON:0001114 ! right lobe of liver +relationship: part_of UBERON:0005171 ! hepatic duct + +[Term] +id: UBERON:0001177 +name: left hepatic duct +def: "The duct that drains bile from the left half of the liver and joins the right hepatic duct to form the common hepatic duct." [http://www.medterms.com/script/main/art.asp?articlekey=26035] +synonym: "ductus hepaticus sinister" RELATED LATIN [] +xref: EHDAA2:0000941 +xref: EHDAA:3990 +xref: EMAPA:32795 +xref: FMA:14670 +xref: http://linkedlifedata.com/resource/umls/id/C0227560 +xref: http://www.snomedbrowser.com/Codes/Details/245400009 +xref: MA:0001638 +xref: NCIT:C32960 +xref: UMLS:C0227560 {source="ncithesaurus:Left_Hepatic_Duct"} +xref: VHOG:0000218 +is_a: UBERON:0003703 ! extrahepatic bile duct +intersection_of: UBERON:0003703 ! extrahepatic bile duct +intersection_of: continuous_with UBERON:0001115 ! left lobe of liver +relationship: continuous_with UBERON:0001115 ! left lobe of liver +relationship: part_of UBERON:0005171 ! hepatic duct + +[Term] +id: UBERON:0001178 +name: visceral peritoneum +def: "The inner layer of peritoneum that is wrapped around organs located inside the intraperitoneal space." [http://en.wikipedia.org/wiki/Peritoneum#Types, http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +subset: vertebrate_core +synonym: "visceral serous membrane of peritoneum" EXACT [UBERON:cjm] +xref: EMAPA:16592 +xref: FMA:14703 +xref: http://www.snomedbrowser.com/Codes/Details/362702003 +xref: TAO:0005132 +xref: VHOG:0001528 +xref: Visceral:peritoneum +xref: ZFA:0005132 +is_a: UBERON:0022350 ! visceral serous membrane +intersection_of: UBERON:0022350 ! visceral serous membrane +intersection_of: part_of UBERON:0002358 ! peritoneum +relationship: part_of UBERON:0002358 ! peritoneum + +[Term] +id: UBERON:0001179 +name: peritoneal cavity +def: "Anatomical cavity bounded by visceral and parietal peritoneum" [http://en.wikipedia.org/wiki/Peritoneal_cavity, http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/86] +subset: pheno_slim +subset: uberon_slim +synonym: "cavitas peritonealis" RELATED [BTO:0001782] +synonym: "cavitas peritonealis" RELATED LATIN [http://en.wikipedia.org/wiki/Peritoneal_cavity] +synonym: "saccus serosus peritonei" RELATED LATIN [http://en.wikipedia.org/wiki/Peritoneal_cavity] +xref: BTO:0001782 +xref: EHDAA2:0001446 +xref: EMAPA:16138 +xref: FMA:14704 +xref: GAID:24 +xref: http://linkedlifedata.com/resource/umls/id/C1704247 +xref: http://www.snomedbrowser.com/Codes/Details/181616008 +xref: MA:0000054 +xref: MESH:A01.047.025.600.678 +xref: NCIT:C12769 +xref: Peritoneal:cavity +xref: UMLS:C1704247 {source="ncithesaurus:Peritoneal_Cavity"} +xref: VHOG:0000852 +is_a: UBERON:0035809 ! serous cavity +intersection_of: UBERON:0002553 ! anatomical cavity +intersection_of: adjacent_to UBERON:0001178 ! visceral peritoneum +intersection_of: adjacent_to UBERON:0001366 ! parietal peritoneum +intersection_of: luminal_space_of UBERON:0035820 ! peritoneal sac +relationship: adjacent_to UBERON:0001178 ! visceral peritoneum +relationship: adjacent_to UBERON:0001366 ! parietal peritoneum +relationship: develops_from UBERON:0003887 {source="Wikipedia"} ! intraembryonic coelom +relationship: luminal_space_of UBERON:0035820 ! peritoneal sac +relationship: part_of UBERON:0035820 ! peritoneal sac + +[Term] +id: UBERON:0001180 +name: superior recess of lesser sac +alt_id: UBERON:0006299 +synonym: "omental bursa superior recess" EXACT [MA:0000447] +synonym: "recessus superior bursae omentalis" EXACT LATIN [FMA:TA] +synonym: "recessus superior bursae omentalis" EXACT LATIN [FMA:14708, FMA:TA] +synonym: "recessus superior omentalis" EXACT [FMA:14708] +synonym: "superior omental bursa" EXACT [FMA:14708] +synonym: "superior recess" EXACT [EHDAA2:0001958] +synonym: "superior recess of omental bursa" EXACT [FMA:14708] +xref: EHDAA2:0001958 +xref: EHDAA:2343 +xref: EMAPA:18049 +xref: FMA:14708 +xref: http://www.snomedbrowser.com/Codes/Details/263190002 +xref: MA:0000447 +is_a: UBERON:0002553 ! anatomical cavity +relationship: develops_from UBERON:0005252 {source="EHDAA2"} ! lesser sac cavity +relationship: part_of UBERON:0001341 {source="EMAPA"} ! lesser sac + +[Term] +id: UBERON:0001181 +name: inferior recess of lesser sac +alt_id: UBERON:0006249 +synonym: "inferior omental bursa" EXACT [FMA:14709] +synonym: "inferior recess" EXACT [EHDAA2:0000825] +synonym: "inferior recess of omental bursa" EXACT [FMA:14709] +synonym: "omental bursa inferior recess" EXACT [MA:0000446] +synonym: "recessus inferior bursae omentalis" EXACT LATIN [FMA:TA] +synonym: "recessus inferior bursae omentalis" EXACT LATIN [FMA:14709, FMA:TA] +synonym: "recessus inferior omentalis" EXACT [FMA:14709] +xref: EHDAA2:0000825 +xref: EHDAA:6083 +xref: EMAPA:18048 +xref: FMA:14709 +xref: http://www.snomedbrowser.com/Codes/Details/263261002 +xref: MA:0000446 +is_a: UBERON:0002553 ! anatomical cavity +relationship: part_of UBERON:0001341 ! lesser sac + +[Term] +id: UBERON:0001182 +name: superior mesenteric artery +def: "Mesenteric artery that supplies the whole length of the small intestine except the superior part of the duodenum. It also supplies the cecum and the ascending part of the colon and about half the transverse part of the colon. It arises from the anterior surface of the aorta below the celiac artery at the level of the first lumbar vertebra." [MESH:A07.231.114.565.755] +subset: pheno_slim +subset: uberon_slim +synonym: "arteria mesenterica superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_mesenteric_artery] +synonym: "arteria mesenterica superior" RELATED [BTO:0002303] +synonym: "superior mesenteric arterial tree" EXACT [] +xref: BTO:0002303 +xref: EHDAA2:0001949 +xref: EHDAA:3358 +xref: EHDAA:5313 +xref: EMAPA:18619 +xref: FMA:14749 +xref: GAID:502 +xref: galen:SuperiorMesentericArtery +xref: http://en.wikipedia.org/wiki/Superior_mesenteric_artery +xref: http://linkedlifedata.com/resource/umls/id/C0162861 +xref: http://www.snomedbrowser.com/Codes/Details/362048004 +xref: MA:0002005 +xref: MESH:D017538 +xref: NCIT:C33685 +xref: OpenCyc:Mx4rwE5KipwpEbGdrcN5Y29ycA +xref: UMLS:C0162861 {source="ncithesaurus:Superior_Mesenteric_Artery"} +xref: VHOG:0000754 +is_a: UBERON:0005616 ! mesenteric artery +intersection_of: UBERON:0005616 ! mesenteric artery +intersection_of: supplies UBERON:0002115 ! jejunum +intersection_of: supplies UBERON:0002116 ! ileum +relationship: supplies UBERON:0002115 ! jejunum +relationship: supplies UBERON:0002116 ! ileum + +[Term] +id: UBERON:0001183 +name: inferior mesenteric artery +def: "Mesenteric artery that supplies the large intestine from the left colic (or splenic) flexure to the upper part of the rectum, which includes the descending colon, the sigmoid colon, and part of the rectum. Proximally, its territory of distribution overlaps (forms a watershed) with the middle colic artery, and therefore the superior mesenteric artery. The SMA and IMA anastomose via the marginal artery (artery of Drummond). The territory of distribution of the IMA is more or less equivalent to the embryonic hindgut. [WP,unvetted]." [http://en.wikipedia.org/wiki/Inferior_mesenteric_artery] +subset: pheno_slim +subset: uberon_slim +synonym: "arteria mesenterica inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_mesenteric_artery] +synonym: "arteria mesenterica inferior" RELATED [BTO:0002302] +synonym: "IMA" BROAD ABBREVIATION [] +synonym: "inferior mesenteric arterial tree" EXACT [] +xref: BTO:0002302 +xref: EHDAA2:0000817 +xref: EHDAA:4345 +xref: EMAPA:18618 +xref: FMA:14750 +xref: GAID:501 +xref: galen:InferiorMesentericArtery +xref: http://en.wikipedia.org/wiki/Inferior_mesenteric_artery +xref: http://linkedlifedata.com/resource/umls/id/C0162860 +xref: http://www.snomedbrowser.com/Codes/Details/181341006 +xref: MA:0002004 +xref: MESH:D017537 +xref: NCIT:C32780 +xref: OpenCyc:Mx4rv-t-S5wpEbGdrcN5Y29ycA +xref: UMLS:C0162860 {source="ncithesaurus:Inferior_Mesenteric_Artery"} +xref: VHOG:0001116 +is_a: UBERON:0005616 ! mesenteric artery +is_a: UBERON:0035039 ! rectal artery +intersection_of: UBERON:0005616 ! mesenteric artery +intersection_of: supplies UBERON:0001052 ! rectum +intersection_of: supplies UBERON:0001158 ! descending colon +intersection_of: supplies UBERON:0001159 ! sigmoid colon +relationship: supplies UBERON:0001158 ! descending colon +relationship: supplies UBERON:0001159 ! sigmoid colon + +[Term] +id: UBERON:0001184 +name: renal artery +def: "One of two laterally paired arteries that supplies the kidneys. These are large arteries that branch from the dorsal aorta in primitive vertebrates." [http://en.wikipedia.org/wiki/Renal_artery, ISBN:0073040584] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "arteria renalis" RELATED LATIN [http://en.wikipedia.org/wiki/Renal_artery] +synonym: "renal arterial tree" EXACT [] +synonym: "renal arteries" RELATED PLURAL [] +xref: AAO:0010223 +xref: BTO:0001165 +xref: EFO:0002552 +xref: EHDAA2:0004100 +xref: EHDAA:5321 +xref: EHDAA:8594 +xref: EMAPA:28373 +xref: FMA:14751 +xref: GAID:507 +xref: galen:RenalArtery +xref: http://linkedlifedata.com/resource/umls/id/C0035065 +xref: http://www.snomedbrowser.com/Codes/Details/181339005 +xref: MA:0002035 +xref: MESH:D012077 +xref: NCIT:C12778 +xref: OpenCyc:Mx4rveOFHpwpEbGdrcN5Y29ycA +xref: Renal:artery +xref: RETIRED_EHDAA2:0001600 +xref: TAO:0000420 +xref: UMLS:C0035065 {source="ncithesaurus:Renal_Artery"} +xref: ZFA:0000420 +is_a: UBERON:0012254 ! abdominal aorta artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0002113 ! kidney +relationship: supplies UBERON:0002113 ! kidney + +[Term] +id: UBERON:0001185 +name: right renal artery +def: "Renal artery that supplies the right kidney" [https://orcid.org/0000-0002-6601-2165] +comment: The right [renal artery] passes behind the inferior vena cava, the right renal vein, the head of the pancreas, and the descending part of the duodenum[WP] +subset: pheno_slim +subset: uberon_slim +synonym: "right renal arterial tree" EXACT [] +xref: EMAPA:37380 {source="MA:th"} +xref: FMA:14752 +xref: http://linkedlifedata.com/resource/umls/id/C0226332 +xref: http://www.snomedbrowser.com/Codes/Details/36800007 +xref: MA:0002037 +xref: NCIT:C52740 +xref: OpenCyc:Mx4rtW8I0KgEEdudWQACs5b6Bw +xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rveOFHpwpEbGdrcN5Y29ycA +xref: UMLS:C0226332 {source="ncithesaurus:Right_Renal_Artery"} +is_a: UBERON:0001184 ! renal artery +intersection_of: UBERON:0001184 ! renal artery +intersection_of: supplies UBERON:0004539 ! right kidney +relationship: supplies UBERON:0004539 ! right kidney + +[Term] +id: UBERON:0001186 +name: left renal artery +def: "Renal artery that supplies the left kidney" [https://orcid.org/0000-0002-6601-2165] +comment: The left [renal artery] is somewhat higher than the right; it lies behind the left renal vein, the body of the pancreas and the splenic vein, and is crossed by the inferior mesenteric vein[WP] +subset: pheno_slim +synonym: "left renal arterial tree" EXACT [] +xref: EMAPA:37098 {source="MA:th"} +xref: FMA:14753 +xref: http://linkedlifedata.com/resource/umls/id/C0226333 +xref: http://www.snomedbrowser.com/Codes/Details/19215005 +xref: MA:0002036 +xref: NCIT:C52741 +xref: OpenCyc:Mx4rtW8I0agEEdudWQACs5b6Bw +xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rveOFHpwpEbGdrcN5Y29ycA +xref: UMLS:C0226333 {source="ncithesaurus:Left_Renal_Artery"} +is_a: UBERON:0001184 ! renal artery +intersection_of: UBERON:0001184 ! renal artery +intersection_of: supplies UBERON:0004538 ! left kidney +relationship: supplies UBERON:0004538 ! left kidney + +[Term] +id: UBERON:0001187 +name: testicular artery +def: "One of a pair of arteries that is a branch of the abdominal aorta that supplies blood to a male gonad." [http://en.wikipedia.org/wiki/Testicular_artery, http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "arteria testicularis" RELATED LATIN [http://en.wikipedia.org/wiki/Testicular_artery] +synonym: "internal spermatic" RELATED [http://en.wikipedia.org/wiki/Testicular_artery] +synonym: "internal spermatic arteries" RELATED [http://en.wikipedia.org/wiki/Testicular_artery] +synonym: "internal spermatic artery" RELATED [http://en.wikipedia.org/wiki/Testicular_artery] +synonym: "internal spermatic vessels" RELATED [http://en.wikipedia.org/wiki/Testicular_artery] +synonym: "spermatic arteries" RELATED [http://en.wikipedia.org/wiki/Testicular_artery] +synonym: "spermatic artery" RELATED [http://en.wikipedia.org/wiki/Testicular_artery] +synonym: "spermatic vessels" RELATED [http://en.wikipedia.org/wiki/Testicular_artery] +synonym: "testicular arterial tree" EXACT [] +synonym: "testicular arteries" RELATED [http://en.wikipedia.org/wiki/Testicular_artery] +xref: EMAPA:18621 +xref: FMA:14758 +xref: http://www.snomedbrowser.com/Codes/Details/244281003 +xref: MA:0002063 +xref: Testicular:artery +is_a: UBERON:0010192 ! genital artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0000473 ! testis +relationship: supplies UBERON:0000473 ! testis + +[Term] +id: UBERON:0001188 +name: right testicular artery +def: "A testicular artery that supplies a right testicle." [OBOL:automatic] +synonym: "right spermatic artery" EXACT [] +synonym: "trunk of right testicular arterial tree" EXACT [] +xref: EMAPA:37382 {source="MA:th"} +xref: FMA:14759 +xref: http://linkedlifedata.com/resource/umls/id/C0734076 +xref: MA:0002042 +xref: NCIT:C52738 +xref: UMLS:C0734076 {source="ncithesaurus:Right_Spermatic_Artery"} +is_a: UBERON:0001187 ! testicular artery +is_a: UBERON:0003468 ! ureteric segment of renal artery +intersection_of: UBERON:0001187 ! testicular artery +intersection_of: supplies UBERON:0004534 ! right testis +relationship: supplies UBERON:0001222 ! right ureter +relationship: supplies UBERON:0004534 ! right testis + +[Term] +id: UBERON:0001189 +name: left testicular artery +def: "A testicular artery that supplies a left testicle." [OBOL:automatic] +synonym: "left spermatic artery" EXACT [] +synonym: "trunk of left testicular arterial tree" EXACT [] +xref: EMAPA:37099 {source="MA:th"} +xref: FMA:14760 +xref: http://linkedlifedata.com/resource/umls/id/C0734077 +xref: MA:0002041 +xref: NCIT:C52739 +xref: UMLS:C0734077 {source="ncithesaurus:Left_Spermatic_Artery"} +is_a: UBERON:0001187 ! testicular artery +is_a: UBERON:0003468 ! ureteric segment of renal artery +intersection_of: UBERON:0001187 ! testicular artery +intersection_of: supplies UBERON:0004533 ! left testis +relationship: supplies UBERON:0001223 ! left ureter +relationship: supplies UBERON:0004533 ! left testis + +[Term] +id: UBERON:0001190 +name: ovarian artery +def: "An artery that supplies an ovary." [OBOL:automatic] +subset: uberon_slim +synonym: "arteria ovarica" RELATED LATIN [http://en.wikipedia.org/wiki/Ovarian_artery] +synonym: "ovarian arterial tree" EXACT [] +xref: EMAPA:18620 +xref: FMA:14761 +xref: http://linkedlifedata.com/resource/umls/id/C0226411 +xref: http://www.snomedbrowser.com/Codes/Details/244280002 +xref: MA:0002012 +xref: NCIT:C33242 +xref: OpenCyc:Mx4rwOa9PZwpEbGdrcN5Y29ycA +xref: Ovarian:artery +xref: UMLS:C0226411 {source="ncithesaurus:Ovarian_Artery"} +is_a: UBERON:0001637 ! artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0000992 ! ovary +relationship: supplies UBERON:0000992 ! ovary + +[Term] +id: UBERON:0001191 +name: common iliac artery +def: "The common iliac arteries are two large arteries, about 4cm long in adults but more than a centimetre in diameter, that originate from the aortic bifurcation. The arteries run inferolaterally, along the medial border of the psoas muscles to the pelvic brim, where they bifurcate into the external iliac artery and internal iliac artery. The common iliac artery, and all of its branches, exist as paired structures (that is to say, there is one on the left side and one on the right). The distribution of the common iliac artery is basically the pelvis and lower limb on the corresponding side. Both common iliac arteries are accompanied along their course by common iliac veins. [WP,unvetted]." [http://en.wikipedia.org/wiki/Common_iliac_artery] +comment: See notes for parent class +subset: uberon_slim +synonym: "arteria iliaca communis" RELATED LATIN [http://en.wikipedia.org/wiki/Common_iliac_artery] +synonym: "common iliac arterial tree" EXACT [] +xref: EHDAA2:0000311 +xref: EHDAA:2553 +xref: EMAPA:17310 +xref: FMA:14764 +xref: http://en.wikipedia.org/wiki/Common_iliac_artery +xref: http://linkedlifedata.com/resource/umls/id/C1261084 +xref: http://www.snomedbrowser.com/Codes/Details/362050007 +xref: MA:0001972 +xref: NCIT:C32357 +xref: OpenCyc:Mx4rvkZ7ZpwpEbGdrcN5Y29ycA +xref: UMLS:C1261084 {source="ncithesaurus:Common_Iliac_Artery"} +is_a: UBERON:0005609 {source="MA"} ! iliac artery +is_a: UBERON:0012254 ! abdominal aorta artery + +[Term] +id: UBERON:0001192 +name: left gastric artery +def: "An artery that arises from the celiac artery and supplies the stomach." [http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "arteria gastrica sinistra" RELATED LATIN [http://en.wikipedia.org/wiki/Left_gastric_artery] +synonym: "gastric artery" RELATED [FMA:14768] +xref: EMAPA:35374 +xref: FMA:14768 +xref: galen:LeftGastricArtery +xref: http://en.wikipedia.org/wiki/Left_gastric_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226299 +xref: http://www.snomedbrowser.com/Codes/Details/244267000 +xref: MA:0001961 +xref: NCIT:C32654 +xref: OpenCyc:Mx4rwMjqKZwpEbGdrcN5Y29ycA +xref: UMLS:C0226299 {source="ncithesaurus:Gastric_Artery"} +is_a: UBERON:0004573 ! systemic artery +relationship: branching_part_of UBERON:0001640 ! celiac artery +relationship: part_of UBERON:0001640 ! celiac artery +relationship: supplies UBERON:0000945 ! stomach + +[Term] +id: UBERON:0001193 +name: hepatic artery +def: "An artery that supplies the liver." [http://en.wikipedia.org/wiki/Hepatic_artery_proper, https://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +subset: vertebrate_core +synonym: "arteria hepatica" RELATED [BTO:0004307] +synonym: "arteria hepatica propria" EXACT LATIN [] +xref: BTO:0004307 +xref: EMAPA:17859 +xref: FMA:14769 +xref: GAID:496 +xref: galen:HepaticArtery +xref: http://linkedlifedata.com/resource/umls/id/C0019145 +xref: http://www.snomedbrowser.com/Codes/Details/76015000 +xref: MA:0001963 +xref: MESH:D006499 +xref: NCIT:C32729 +xref: OpenCyc:Mx4rvzKtFpwpEbGdrcN5Y29ycA +xref: TAO:0005161 +xref: UMLS:C0019145 {source="ncithesaurus:Hepatic_Artery"} +xref: ZFA:0005161 +is_a: UBERON:0001637 ! artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0002107 ! liver +relationship: supplies UBERON:0002107 ! liver + +[Term] +id: UBERON:0001194 +name: splenic artery +def: "An artery that supplies the spleen." [http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "arteria lienalis" RELATED LATIN [http://en.wikipedia.org/wiki/Splenic_artery] +synonym: "arteria splenica" EXACT LATIN [http://en.wikipedia.org/wiki/Splenic_artery] +synonym: "lienal artery" EXACT [MA:0001991] +xref: EMAPA:19216 +xref: FMA:14773 +xref: GAID:510 +xref: galen:SplenicArtery +xref: http://linkedlifedata.com/resource/umls/id/C0037996 +xref: http://www.snomedbrowser.com/Codes/Details/244266009 +xref: MA:0001991 +xref: MA:0003177 +xref: MESH:D013157 +xref: NCIT:C33597 +xref: OpenCyc:Mx4rv0cb2ZwpEbGdrcN5Y29ycA +xref: Splenic:artery +xref: UMLS:C0037996 {source="ncithesaurus:Splenic_Artery"} +is_a: UBERON:0004573 ! systemic artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0002106 ! spleen +disjoint_from: UBERON:0001640 ! celiac artery +relationship: branching_part_of UBERON:0001640 ! celiac artery +relationship: part_of UBERON:0001640 ! celiac artery +relationship: supplies UBERON:0002106 ! spleen + +[Term] +id: UBERON:0001195 +name: inferior pancreaticoduodenal artery +def: "The inferior pancreaticoduodenal artery is a branch of the superior mesenteric artery or from its first intestinal branch, opposite the upper border of the inferior part of the duodenum. It courses to the right between the head of the pancreas and duodenum, and then ascends to anastomose with the anterior and posterior superior pancreaticoduodenal artery. It distributes branches to the head of the pancreas and to the descending and inferior parts of the duodenum. [WP,unvetted]." [http://en.wikipedia.org/wiki/Inferior_pancreaticoduodenal_artery] +subset: uberon_slim +synonym: "arteriae pancreaticoduodenales inferiores" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_pancreaticoduodenal_artery] +synonym: "inferior pancreatico-duodenal artery" EXACT [] +xref: EMAPA:37086 {source="MA:th"} +xref: FMA:14805 +xref: http://en.wikipedia.org/wiki/Inferior_pancreaticoduodenal_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226319 +xref: http://www.snomedbrowser.com/Codes/Details/244273004 +xref: MA:0002014 +xref: NCIT:C32786 +xref: UMLS:C0226319 {source="ncithesaurus:Inferior_Pancreatico-duodenal_artery"} +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0009658 ! pancreaticoduodenal artery +relationship: branching_part_of UBERON:0001182 ! superior mesenteric artery +relationship: part_of UBERON:0001182 ! superior mesenteric artery + +[Term] +id: UBERON:0001196 +name: middle colic artery +def: "The middle colic artery is a branch of the superior mesenteric artery that mostly supplies the transverse colon. It arises just below the pancreas, and, passing downward and forward between the layers of the transverse mesocolon, divides into two branches: right and left. The right branch anastomoses with the right colic artery The left branch anastomoses with the left colic artery, a branch of the inferior mesenteric artery. The arches thus formed are placed about two fingers' breadth from the transverse colon, to which they distribute branches. [WP,unvetted]." [http://en.wikipedia.org/wiki/Middle_colic_artery] +subset: uberon_slim +synonym: "arteria colica media" RELATED LATIN [http://en.wikipedia.org/wiki/Middle_colic_artery] +xref: EMAPA:37106 {source="MA:th"} +xref: FMA:14810 +xref: galen:MiddleColicArtery +xref: http://en.wikipedia.org/wiki/Middle_colic_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226328 +xref: http://www.snomedbrowser.com/Codes/Details/244276007 +xref: MA:0002007 +xref: NCIT:C52981 +xref: UMLS:C0226328 {source="ncithesaurus:Middle_Colic_Artery"} +is_a: UBERON:0004573 ! systemic artery +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0001182 ! superior mesenteric artery +intersection_of: supplies UBERON:0001157 ! transverse colon +relationship: branching_part_of UBERON:0001182 ! superior mesenteric artery +relationship: part_of UBERON:0001182 ! superior mesenteric artery +relationship: supplies UBERON:0001157 ! transverse colon + +[Term] +id: UBERON:0001197 +name: ileocolic artery +def: "The Ileocolic Artery is the lowest branch arising from the concavity of the superior mesenteric artery. It passes downward and to the right behind the peritoneum toward the right iliac fossa, where it divides into a superior and an inferior branch; the inferior anastomoses with the end of the superior mesenteric artery, the superior with the right colic artery. Supplies the cecum, ileum, and appendix. [WP,unvetted]." [http://en.wikipedia.org/wiki/Ileocolic_artery] +subset: uberon_slim +synonym: "arteria ileocolica" RELATED LATIN [http://en.wikipedia.org/wiki/Ileocolic_artery] +xref: EMAPA:37083 {source="MA:th"} +xref: FMA:14815 +xref: galen:IleocolicArtery +xref: http://linkedlifedata.com/resource/umls/id/C0226323 +xref: http://www.snomedbrowser.com/Codes/Details/244279000 +xref: Ileocolic:artery +xref: MA:0001970 +xref: NCIT:C32760 +xref: UMLS:C0226323 {source="ncithesaurus:Ileo-colic_Artery"} +is_a: UBERON:0004573 ! systemic artery +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0001182 ! superior mesenteric artery +intersection_of: supplies UBERON:0001153 ! caecum +intersection_of: supplies UBERON:0001154 ! vermiform appendix +intersection_of: supplies UBERON:0002116 ! ileum +relationship: branching_part_of UBERON:0001182 ! superior mesenteric artery +relationship: part_of UBERON:0001182 ! superior mesenteric artery +relationship: supplies UBERON:0001153 ! caecum +relationship: supplies UBERON:0001154 ! vermiform appendix +relationship: supplies UBERON:0002116 ! ileum + +[Term] +id: UBERON:0001198 +name: superior suprarenal artery +def: "Each (left and right) superior suprarenal artery is a branch of the inferior phrenic artery on that side of the body. The left and right phrenic arteries supply the diaphragm, and come off the aorta. [WP,unvetted]." [http://en.wikipedia.org/wiki/Superior_suprarenal_artery] +subset: uberon_slim +synonym: "arteriae suprarenales superiores" EXACT LATIN [http://en.wikipedia.org/wiki/Superior_suprarenal_artery] +synonym: "superior adrenal branch of inferior phrenic artery" EXACT [] +synonym: "superior suprarenal branch of inferior phrenic artery" EXACT [] +xref: EMAPA:37122 {source="MA:th"} +xref: FMA:14863 +xref: http://en.wikipedia.org/wiki/Superior_suprarenal_artery +xref: http://linkedlifedata.com/resource/umls/id/C0580876 +xref: http://www.snomedbrowser.com/Codes/Details/303424001 +xref: MA:0002057 +xref: NCIT:C52736 +xref: UMLS:C0580876 {source="ncithesaurus:Superior_Suprarenal_Artery"} +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0005624 ! suprarenal artery +intersection_of: UBERON:0005624 ! suprarenal artery +intersection_of: branching_part_of UBERON:0012255 ! inferior phrenic artery +relationship: branching_part_of UBERON:0012255 ! inferior phrenic artery +relationship: part_of UBERON:0012255 ! inferior phrenic artery + +[Term] +id: UBERON:0001199 +name: mucosa of stomach +def: "The mucosal layer that lines the stomach." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "gastric mucosa" EXACT [] +synonym: "gastric mucous membrane" EXACT [] +synonym: "Magenschleimhaut" RELATED [BTO:0001308] +synonym: "mucosa of organ of stomach" EXACT [OBOL:automatic] +synonym: "mucosa of organ of ventriculus" EXACT [OBOL:automatic] +synonym: "mucosa of ventriculus" EXACT [OBOL:automatic] +synonym: "mucous membrane of stomach" EXACT [] +synonym: "mucous membrane of ventriculus" EXACT [OBOL:automatic] +synonym: "organ mucosa of stomach" EXACT [OBOL:automatic] +synonym: "organ mucosa of ventriculus" EXACT [OBOL:automatic] +synonym: "stomach mucosa" EXACT [] +synonym: "stomach mucosa of organ" EXACT [OBOL:automatic] +synonym: "stomach mucous membrane" EXACT [OBOL:automatic] +synonym: "stomach organ mucosa" EXACT [OBOL:automatic] +synonym: "tunica mucosa (gaster)" EXACT [] +synonym: "tunica mucosa gastricae" EXACT LATIN [FMA:14907, FMA:TA] +synonym: "tunica mucosa gastris" RELATED [BTO:0001308] +synonym: "tunica mucosa gastris" RELATED LATIN [http://en.wikipedia.org/wiki/Gastric_mucosa] +synonym: "ventriculus mucosa" EXACT [OBOL:automatic] +synonym: "ventriculus mucosa of organ" EXACT [OBOL:automatic] +synonym: "ventriculus mucous membrane" EXACT [OBOL:automatic] +synonym: "ventriculus organ mucosa" EXACT [OBOL:automatic] +xref: BTO:0001308 +xref: CALOHA:TS-0404 +xref: EMAPA:35817 +xref: FMA:14907 +xref: GAID:321 +xref: galen:GastricMucosa +xref: Gastric:mucosa +xref: http://linkedlifedata.com/resource/umls/id/C0017136 +xref: http://www.snomedbrowser.com/Codes/Details/362131005 +xref: MA:0002683 +xref: MESH:A03.492.766.440 +xref: NCIT:C32656 +xref: OpenCyc:Mx8NhB4rvcD6KJwpEbGdrcN5Y29ycB4rvmKNOpwpEbGdrcN5Y29ycB4rvVj5FpwpEbGdrcN5Y29ycB4rvVjlqpwpEbGdrcN5Y29ycA +xref: UMLS:C0017136 {source="ncithesaurus:Gastric_Mucosa"} +is_a: UBERON:0004786 ! gastrointestinal system mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0000945 ! stomach +relationship: contributes_to_morphology_of UBERON:0001167 ! wall of stomach +relationship: part_of UBERON:0001167 ! wall of stomach + +[Term] +id: UBERON:0001200 +name: submucosa of stomach +def: "the fibrous connective tissue layer beneath the stomach mucosa" [MGI:csmith, MP:0010794] +subset: pheno_slim +synonym: "gastric submucosa" EXACT [] +synonym: "stomach submucosa" EXACT [] +synonym: "submucosa of ventriculus" EXACT [OBOL:automatic] +synonym: "submucous layer of stomach" RELATED [BTO:0002110] +synonym: "tela submucosa (gaster)" EXACT [] +synonym: "tela submucosa gastricae" EXACT LATIN [FMA:14908, FMA:TA] +synonym: "tela submucosa ventriculi" RELATED [BTO:0002110] +synonym: "ventriculus submucosa" EXACT [OBOL:automatic] +xref: BTO:0002110 +xref: EMAPA:35825 +xref: FMA:14908 +xref: http://linkedlifedata.com/resource/umls/id/C0227211 +xref: http://www.snomedbrowser.com/Codes/Details/52459002 +xref: MA:0002685 +xref: NCIT:C32663 +xref: UMLS:C0227211 {source="ncithesaurus:Gastric_Submucosa"} +is_a: UBERON:0018257 ! submucosa of digestive tract +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0000945 ! stomach +relationship: contributes_to_morphology_of UBERON:0001167 ! wall of stomach +relationship: part_of UBERON:0001167 ! wall of stomach + +[Term] +id: UBERON:0001201 +name: serosa of stomach +def: "the outermost layer of the stomach wall, consisting of layers of connective tissue continuous with the peritoneum" [MGI:csmith, MP:0010793] +subset: pheno_slim +synonym: "anatomical wall of stomach serosa" EXACT [OBOL:automatic] +synonym: "anatomical wall of stomach serous membrane" EXACT [OBOL:automatic] +synonym: "anatomical wall of ventriculus serosa" EXACT [OBOL:automatic] +synonym: "anatomical wall of ventriculus serous membrane" EXACT [OBOL:automatic] +synonym: "gastric serosa" RELATED [] +synonym: "gastric wall serosa" EXACT [OBOL:automatic] +synonym: "gastric wall serous membrane" EXACT [OBOL:automatic] +synonym: "serosa of anatomical wall of stomach" EXACT [OBOL:automatic] +synonym: "serosa of anatomical wall of ventriculus" EXACT [OBOL:automatic] +synonym: "serosa of gastric wall" EXACT [OBOL:automatic] +synonym: "serosa of stomach anatomical wall" EXACT [OBOL:automatic] +synonym: "serosa of stomach wall" EXACT [OBOL:automatic] +synonym: "serosa of ventriculus anatomical wall" EXACT [OBOL:automatic] +synonym: "serosa of ventriculus wall" EXACT [OBOL:automatic] +synonym: "serosa of wall of stomach" EXACT [OBOL:automatic] +synonym: "serosa of wall of ventriculus" EXACT [OBOL:automatic] +synonym: "serous coat of stomach" EXACT [] +synonym: "serous membrane of anatomical wall of stomach" EXACT [OBOL:automatic] +synonym: "serous membrane of anatomical wall of ventriculus" EXACT [OBOL:automatic] +synonym: "serous membrane of gastric wall" EXACT [OBOL:automatic] +synonym: "serous membrane of stomach anatomical wall" EXACT [OBOL:automatic] +synonym: "serous membrane of stomach wall" EXACT [OBOL:automatic] +synonym: "serous membrane of ventriculus anatomical wall" EXACT [OBOL:automatic] +synonym: "serous membrane of ventriculus wall" EXACT [OBOL:automatic] +synonym: "serous membrane of wall of stomach" EXACT [OBOL:automatic] +synonym: "serous membrane of wall of ventriculus" EXACT [OBOL:automatic] +synonym: "stomach anatomical wall serosa" EXACT [OBOL:automatic] +synonym: "stomach anatomical wall serous membrane" EXACT [OBOL:automatic] +synonym: "stomach serosa" EXACT [] +synonym: "stomach wall serosa" EXACT [OBOL:automatic] +synonym: "stomach wall serous membrane" EXACT [OBOL:automatic] +synonym: "tunica serosa (gaster)" EXACT [] +synonym: "tunica serosa gastricae" EXACT LATIN [FMA:14914, FMA:TA] +synonym: "ventriculus anatomical wall serosa" EXACT [OBOL:automatic] +synonym: "ventriculus anatomical wall serous membrane" EXACT [OBOL:automatic] +synonym: "ventriculus wall serosa" EXACT [OBOL:automatic] +synonym: "ventriculus wall serous membrane" EXACT [OBOL:automatic] +synonym: "visceral peritoneum of stomach" EXACT [] +synonym: "wall of stomach serosa" EXACT [OBOL:automatic] +synonym: "wall of stomach serous membrane" EXACT [OBOL:automatic] +synonym: "wall of ventriculus serosa" EXACT [OBOL:automatic] +synonym: "wall of ventriculus serous membrane" EXACT [OBOL:automatic] +xref: EMAPA:35822 +xref: FMA:14914 +xref: http://linkedlifedata.com/resource/umls/id/C1517453 +xref: http://www.snomedbrowser.com/Codes/Details/1353004 +xref: MA:0001626 +xref: NCIT:C32662 +xref: UMLS:C1517453 {source="ncithesaurus:Gastric_Serosal_Surface"} +is_a: UBERON:0004782 ! gastrointestinal system serosa +intersection_of: UBERON:0000042 ! serous membrane +intersection_of: part_of UBERON:0001167 ! wall of stomach +relationship: contributes_to_morphology_of UBERON:0001167 ! wall of stomach +relationship: part_of UBERON:0001167 ! wall of stomach + +[Term] +id: UBERON:0001202 +name: pyloric sphincter +def: "A strong ring of smooth muscle at the end of the pyloric canal which lets food pass from the stomach to the duodenum. It receives sympathetic innervation from the celiac ganglion[WP]." [https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "pyloric valve" EXACT [http://en.wikipedia.org/wiki/Pylorus] +xref: AAO:0011093 +xref: EMAPA:19251 +xref: FMA:14916 +xref: http://linkedlifedata.com/resource/umls/id/C0227238 +xref: http://www.snomedbrowser.com/Codes/Details/268073008 +xref: MA:0002952 +xref: NCIT:C33433 +xref: OpenCyc:Mx4rvly2ZZwpEbGdrcN5Y29ycA +xref: UMLS:C0227238 {source="ncithesaurus:Pyloric_Sphincter"} +xref: VHOG:0001466 +xref: XAO:0000457 +is_a: UBERON:0011185 ! gastrointestinal sphincter +intersection_of: UBERON:0004590 ! sphincter muscle +intersection_of: part_of UBERON:0001166 ! pylorus +relationship: adjacent_to UBERON:0002114 ! duodenum +relationship: continuous_with UBERON:0008858 ! pyloric canal +relationship: contributes_to_morphology_of UBERON:0001166 ! pylorus +relationship: part_of UBERON:0001166 ! pylorus + +[Term] +id: UBERON:0001203 +name: muscularis mucosae of stomach +def: "the thin layer of smooth muscle in the mucosal layer of the stomach that functions to agitate the surface area stomach mucosa by moving the villi back and forth" [MGI:csmith, MP:0010806] +subset: pheno_slim +synonym: "gastric muscularis mucosa" EXACT [] +synonym: "lamina muscularis mucosae (tunica mucosa)(gaster)" EXACT [] +synonym: "lamina muscularis mucosae gastricae" EXACT LATIN [FMA:14924, FMA:TA] +synonym: "lamina muscularis of gastric mucosa" EXACT [] +synonym: "muscular coat of stomach" EXACT [] +synonym: "stomach muscularis mucosa" EXACT [] +synonym: "tunica muscularis gastricae" EXACT LATIN [FMA:14924, FMA:TA] +xref: EMAPA:35818 +xref: FMA:14924 +xref: http://linkedlifedata.com/resource/umls/id/C0227200 +xref: http://www.snomedbrowser.com/Codes/Details/64551004 +xref: MA:0002684 +xref: NCIT:C32658 +xref: UMLS:C0227200 {source="ncithesaurus:Gastric_Muscularis_Mucosa"} +is_a: UBERON:0004222 ! stomach smooth muscle +is_a: UBERON:0006676 ! muscularis mucosa +intersection_of: UBERON:0006676 ! muscularis mucosa +intersection_of: part_of UBERON:0001199 ! mucosa of stomach +relationship: contributes_to_morphology_of UBERON:0001199 ! mucosa of stomach +relationship: part_of UBERON:0001199 ! mucosa of stomach + +[Term] +id: UBERON:0001204 +name: mucosa of small intestine +def: "A mucosa that is part of a small intestine [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of organ of small bowel" EXACT [OBOL:automatic] +synonym: "mucosa of organ of small intestine" EXACT [OBOL:automatic] +synonym: "mucosa of small bowel" EXACT [OBOL:automatic] +synonym: "mucous membrane of small bowel" EXACT [OBOL:automatic] +synonym: "mucous membrane of small intestine" EXACT [] +synonym: "organ mucosa of small bowel" EXACT [OBOL:automatic] +synonym: "organ mucosa of small intestine" EXACT [OBOL:automatic] +synonym: "small bowel mucosa" EXACT [OBOL:automatic] +synonym: "small bowel mucosa of organ" EXACT [OBOL:automatic] +synonym: "small bowel mucous membrane" EXACT [OBOL:automatic] +synonym: "small bowel organ mucosa" EXACT [OBOL:automatic] +synonym: "small intestinal mucosa" EXACT [] +synonym: "small intestine mucosa" EXACT [] +synonym: "small intestine mucosa of organ" EXACT [OBOL:automatic] +synonym: "small intestine mucous membrane" EXACT [] +synonym: "small intestine organ mucosa" EXACT [OBOL:automatic] +synonym: "tunica mucosa (intestinum tenue)" EXACT [] +synonym: "tunica mucosa intestini tenuis" EXACT LATIN [FMA:14933, FMA:TA] +xref: BTO:0001259 +xref: CALOHA:TS-0941 +xref: EMAPA:35780 +xref: FMA:14933 +xref: http://linkedlifedata.com/resource/umls/id/C0227261 +xref: http://www.snomedbrowser.com/Codes/Details/362144000 +xref: MA:0002686 +xref: NCIT:C33568 +xref: UMLS:C0227261 {source="ncithesaurus:Small_Intestinal_Mucosa"} +is_a: UBERON:0001242 ! intestinal mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0002108 ! small intestine +relationship: part_of UBERON:0001168 ! wall of small intestine + +[Term] +id: UBERON:0001205 +name: submucosa of small intestine +def: "submucosal tissue in the small intestines." [http://en.wikipedia.org/wiki/Small_intestinal_submucosa] +subset: uberon_slim +synonym: "small bowel submucosa" EXACT [OBOL:automatic] +synonym: "small intestinal submucosa" EXACT [] +synonym: "small intestine submucosa" EXACT [] +synonym: "submucosa of small bowel" EXACT [OBOL:automatic] +synonym: "tela submucosa (intestinum tenue)" EXACT [] +synonym: "tela submucosa intestini tenuis" EXACT LATIN [BTO:0002112] +xref: BTO:0002112 +xref: EMAPA:37564 {source="MA:th"} +xref: FMA:14934 +xref: http://en.wikipedia.org/wiki/Small_intestinal_submucosa +xref: http://linkedlifedata.com/resource/umls/id/C0227268 +xref: http://www.snomedbrowser.com/Codes/Details/691000 +xref: MA:0001562 +xref: NCIT:C33572 +xref: UMLS:C0227268 {source="ncithesaurus:Small_Intestinal_Submucosa"} +is_a: UBERON:0009566 ! intestinal submucosa +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0002108 ! small intestine +relationship: part_of UBERON:0001168 ! wall of small intestine + +[Term] +id: UBERON:0001206 +name: serosa of small intestine +def: "A serous membrane that is part of a small intestine [Automatically generated definition]." [OBOL:automatic] +synonym: "serosa of small bowel" EXACT [OBOL:automatic] +synonym: "serous coat of small intestine" EXACT [] +synonym: "serous membrane of small bowel" EXACT [OBOL:automatic] +synonym: "serous membrane of small intestine" EXACT [OBOL:automatic] +synonym: "small bowel serosa" EXACT [OBOL:automatic] +synonym: "small bowel serous membrane" EXACT [OBOL:automatic] +synonym: "small intestinal serosa" EXACT [] +synonym: "small intestine serosa" EXACT [] +synonym: "small intestine serous membrane" EXACT [OBOL:automatic] +synonym: "tunica serosa (intestinum tenue)" EXACT [] +synonym: "tunica serosa intestini tenuis" EXACT LATIN [FMA:14938, FMA:TA] +synonym: "visceral peritoneum of small intestine" EXACT [] +xref: EMAPA:37561 {source="MA:th"} +xref: FMA:14938 +xref: http://www.snomedbrowser.com/Codes/Details/8266009 +xref: MA:0001558 +is_a: UBERON:0001243 ! serosa of intestine +intersection_of: UBERON:0000042 ! serous membrane +intersection_of: part_of UBERON:0002108 ! small intestine +relationship: part_of UBERON:0001168 ! wall of small intestine + +[Term] +id: UBERON:0001207 +name: mucosa of large intestine +def: "A mucosa that is part of a large intestine [Automatically generated definition]." [OBOL:automatic] +synonym: "large intestinal mucosa" EXACT [] +synonym: "large intestine mucosa" EXACT [] +synonym: "large intestine mucosa of organ" EXACT [OBOL:automatic] +synonym: "large intestine mucous membrane" EXACT [OBOL:automatic] +synonym: "large intestine organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of organ of large intestine" EXACT [OBOL:automatic] +synonym: "mucous membrane of large intestine" EXACT [] +synonym: "organ mucosa of large intestine" EXACT [OBOL:automatic] +synonym: "tunica mucosa intestini crassi" EXACT LATIN [FMA:14969, FMA:TA] +xref: CALOHA:TS-2106 +xref: EMAPA:35467 +xref: FMA:14969 +xref: http://linkedlifedata.com/resource/umls/id/C0734203 +xref: MA:0002688 +xref: NCIT:C32926 +xref: UMLS:C0734203 {source="ncithesaurus:Large_Intestinal_Mucosa"} +is_a: UBERON:0001242 ! intestinal mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0000059 ! large intestine +relationship: part_of UBERON:0001169 ! wall of large intestine + +[Term] +id: UBERON:0001208 +name: submucosa of large intestine +def: "A submucosa that is part of a large intestine [Automatically generated definition]." [OBOL:automatic] +synonym: "large intestinal submucosa" EXACT [] +synonym: "large intestine submucosa" EXACT [] +synonym: "submucous layer of large intestine" RELATED [BTO:0002111] +synonym: "tela submucosa intestini crassi" EXACT LATIN [FMA:14970, FMA:TA] +xref: BTO:0002111 +xref: EMAPA:37560 {source="MA:th"} +xref: FMA:14970 +xref: http://linkedlifedata.com/resource/umls/id/C0734204 +xref: MA:0002690 +xref: NCIT:C32930 +xref: UMLS:C0734204 {source="ncithesaurus:Large_Intestinal_Submucosa"} +is_a: UBERON:0009566 ! intestinal submucosa +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0000059 ! large intestine +relationship: part_of UBERON:0001169 ! wall of large intestine + +[Term] +id: UBERON:0001209 +name: serosa of large intestine +def: "A serous membrane that is part of a large intestine [Automatically generated definition]." [OBOL:automatic] +synonym: "large intestinal serosa" EXACT [] +synonym: "large intestine serosa" EXACT [] +synonym: "large intestine serous membrane" EXACT [OBOL:automatic] +synonym: "serous coat of large intestine" EXACT [] +synonym: "serous membrane of large intestine" EXACT [OBOL:automatic] +synonym: "tunica serosa intestini crassi" EXACT LATIN [FMA:14975, FMA:TA] +synonym: "visceral peritoneum of large intestine" EXACT [] +xref: EMAPA:37557 {source="MA:th"} +xref: FMA:14975 +xref: http://linkedlifedata.com/resource/umls/id/C1517727 +xref: MA:0001546 +xref: NCIT:C32929 +xref: UMLS:C1517727 {source="ncithesaurus:Large_Intestinal_Serosal_Surface"} +is_a: UBERON:0001243 ! serosa of intestine +intersection_of: UBERON:0000042 ! serous membrane +intersection_of: part_of UBERON:0000059 ! large intestine +relationship: part_of UBERON:0001169 ! wall of large intestine + +[Term] +id: UBERON:0001210 +name: muscularis mucosae of small intestine +def: "A muscularis mucosa that is part of a small intestine." [OBOL:automatic] +synonym: "lamina muscularis mucosae (tunica mucosa)(intestinum tenue)" EXACT [] +synonym: "lamina muscularis mucosae intestini tenuis" EXACT LATIN [FMA:15051, FMA:TA] +synonym: "lamina muscularis of small intestine mucous membrane" EXACT [] +synonym: "small intestine muscularis mucosa" EXACT [] +xref: EMAPA:35781 +xref: FMA:15051 +xref: http://linkedlifedata.com/resource/umls/id/C0227262 +xref: http://www.snomedbrowser.com/Codes/Details/36401004 +xref: MA:0002687 +xref: NCIT:C33570 +xref: UMLS:C0227262 {source="ncithesaurus:Small_Intestinal_Muscularis_Mucosa"} +is_a: UBERON:0001240 ! muscularis mucosae of intestine +is_a: UBERON:0004239 ! small intestine smooth muscle +intersection_of: UBERON:0006676 ! muscularis mucosa +intersection_of: part_of UBERON:0002108 ! small intestine +relationship: part_of UBERON:0001204 ! mucosa of small intestine + +[Term] +id: UBERON:0001211 +name: Peyer's patch +def: "the protruding lymphoid tissue located on the mucosa of the intestine that is composed of densely packed B cell follicles" [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/15841100, MESH:A10.549.600, MP:0000696] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "aggregated lymphoid follicle of intestine" RELATED [] +synonym: "aggregated lymphoid nodule" RELATED [] +synonym: "noduli lymphoidei aggregati" EXACT LATIN [] +synonym: "Peyers gland" RELATED [BTO:0001784] +synonym: "Peyers patch" RELATED [BTO:0001784] +xref: BTO:0001784 +xref: CALOHA:TS-0780 +xref: EFO:0001381 +xref: EMAPA:19028 +xref: GAID:950 +xref: http://linkedlifedata.com/resource/umls/id/C0031272 +xref: MA:0000137 +xref: MESH:A10.549.598 +xref: NCIT:C12771 +xref: Peyer's:patch +xref: UMLS:C0031272 {source="ncithesaurus:Peyer_s_Patch"} +is_a: UBERON:0001962 {source="FMA", source="MA"} ! gut-associated lymphoid tissue +relationship: part_of UBERON:0000030 {editor_note="check this"} ! lamina propria +relationship: part_of UBERON:0001242 ! intestinal mucosa + +[Term] +id: UBERON:0001212 +name: duodenal gland +def: "A compound tubular submucosal gland found in that portion of the duodenum which is above the hepatopancreatic sphincter (Sphincter of Oddi). The main function of these glands is to produce a mucus-rich alkaline secretion (containing bicarbonate)[WP]." [http://en.wikipedia.org/wiki/Brunner's_glands] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "Brunner's gland" EXACT [FMA:15060] +synonym: "gland of Brunner" EXACT [FMA:15060] +synonym: "glandula duodenales" RELATED LATIN [BTO:0002376] +synonym: "glandula duodenales Brunneri" RELATED LATIN [BTO:0002376] +synonym: "submucosal gland of duodenum" EXACT [] +xref: Brunner's:glands +xref: BTO:0002376 +xref: EMAPA:36522 +xref: FMA:15060 +xref: GAID:314 +xref: http://linkedlifedata.com/resource/umls/id/C0006323 +xref: http://www.snomedbrowser.com/Codes/Details/41298001 +xref: MA:0001551 +xref: MESH:A03.492.411.620.270.322 +xref: NCIT:C13010 +xref: UMLS:C0006323 {source="ncithesaurus:Brunner_s_Gland"} +is_a: UBERON:0003408 ! gland of digestive tract +is_a: UBERON:0011148 {notes="compound tubular"} ! submucosal gland +intersection_of: UBERON:0011148 ! submucosal gland +intersection_of: part_of UBERON:0002114 ! duodenum +relationship: located_in UBERON:0003332 {source="FMA, modified"} ! submucosa of duodenum +relationship: part_of UBERON:0002114 ! duodenum + +[Term] +id: UBERON:0001213 +name: intestinal villus +alt_id: UBERON:0007607 +def: "the tiny hair-like projections that protrude from the inside of the small intestine that contain blood vessels that capture digested nutrients that are absorbed through the intestinal wall; the villi increase the absorptive surface area of the small intestine by approximately 30-fold" [MGI:csmith, MGI:rbabiuk, MP:0008108] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "enteric villi" EXACT PLURAL [HP:0011473] +synonym: "enteric villous" EXACT [HP:0011473] +synonym: "enteric villus" EXACT [HP:0011473] +synonym: "intestinal villi" EXACT PLURAL [ZFA:0005125] +synonym: "intestinal villus layer" RELATED [] +synonym: "small intestine villus" RELATED [MA:0001563] +synonym: "villi intestinales" EXACT PLURAL [] +synonym: "villi intestinales" RELATED LATIN [http://en.wikipedia.org/wiki/Intestinal_villus] +synonym: "villus" EXACT [BTO:0003121] +synonym: "villus intestinalis (intestinum tenue)" EXACT [FMA:15072] +xref: BTO:0003121 +xref: EMAPA:35784 +xref: FMA:15072 +xref: http://linkedlifedata.com/resource/umls/id/C1519988 +xref: http://www.snomedbrowser.com/Codes/Details/23230007 +xref: Intestinal:villus +xref: MA:0001563 +xref: NCIT:C33874 +xref: TAO:0005125 +xref: UMLS:C1519988 {source="ncithesaurus:Villus"} +xref: ZFA:0005125 +is_a: UBERON:0004923 {source="FMA"} ! organ component layer +relationship: has_part UBERON:0001981 ! blood vessel +relationship: has_part UBERON:0012425 ! striated border microvillus layer +relationship: part_of UBERON:0001277 {source="ZFA"} ! intestinal epithelium + +[Term] +id: UBERON:0001214 +name: pancreatic tributary of splenic vein +def: "The pancreatic veins consist of several small vessels which drain the body and tail of the pancreas, and open into the trunk of the great pancreatic vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Pancreatic_vein] +subset: uberon_slim +synonym: "pancreatic vein" EXACT [] +xref: EMAPA:37678 {source="MA:th"} +xref: FMA:15388 +xref: http://linkedlifedata.com/resource/umls/id/C0226743 +xref: http://www.snomedbrowser.com/Codes/Details/264492008 +xref: MA:0002189 +xref: NCIT:C53059 +xref: Pancreatic:vein +xref: UMLS:C0226743 {source="ncithesaurus:Pancreatic_Vein"} +is_a: UBERON:0002017 ! portal vein +relationship: part_of UBERON:0003713 ! splenic vein +relationship: tributary_of UBERON:0003713 {source="FMA/obol"} ! splenic vein + +[Term] +id: UBERON:0001215 +name: inferior mesenteric vein +def: "A blood vessel that drains blood from the large intestine that usually terminates when reaching the splenic vein, which goes on to form the portal vein with the superior mesenteric vein (SMV). Anatomical variations include the IMV draining into the confluence of the SMV and splenic vein and the IMV draining in the SMV. The IMV lies to the right of the similarly name artery, the inferior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]." [http://en.wikipedia.org/wiki/Inferior_mesenteric_vein] +subset: uberon_slim +synonym: "lower mesenteric vein" RELATED [BTO:0002782] +synonym: "vena mesenterica inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_mesenteric_vein] +xref: BTO:0002782 +xref: EHDAA2:0000819 +xref: EHDAA:8712 +xref: EMAPA:18642 +xref: FMA:15391 +xref: http://en.wikipedia.org/wiki/Inferior_mesenteric_vein +xref: http://linkedlifedata.com/resource/umls/id/C0226754 +xref: http://www.snomedbrowser.com/Codes/Details/281055007 +xref: MA:0002178 +xref: NCIT:C32782 +xref: OpenCyc:Mx4rvcV53ZwpEbGdrcN5Y29ycA +xref: UMLS:C0226754 {source="ncithesaurus:Inferior_Mesenteric_Vein"} +xref: VHOG:0001118 +is_a: UBERON:0005617 ! mesenteric vein +intersection_of: UBERON:0005617 ! mesenteric vein +intersection_of: drains UBERON:0000059 ! large intestine +relationship: drains UBERON:0000059 ! large intestine +relationship: part_of UBERON:0003713 ! splenic vein +relationship: tributary_of UBERON:0003713 {source="FMA/obol"} ! splenic vein + +[Term] +id: UBERON:0001216 +name: jejunal vein +def: "A tributary of the superior mesenteric vein that drains the jejunum." [http://en.wikipedia.org/wiki/Jejunal_veins, http://orcid.org/0000-0002-6601-2165] +synonym: "venae jejunales" RELATED LATIN [http://en.wikipedia.org/wiki/Jejunal_veins] +xref: EMAPA:37160 {source="MA:th"} +xref: FMA:15402 +xref: Jejunal:veins +xref: MA:0002153 +is_a: UBERON:0002017 {source="FMA"} ! portal vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0002115 ! jejunum +relationship: drains UBERON:0002115 ! jejunum +relationship: part_of UBERON:0001138 ! superior mesenteric vein +relationship: tributary_of UBERON:0001138 {source="FMA/obol"} ! superior mesenteric vein + +[Term] +id: UBERON:0001217 +name: ileal vein +def: "The veins that drain blood from the ileum into the superior mesenteric vein." [ncithesaurus:Ileal_Vein] +xref: EMAPA:37149 {source="MA:th"} +xref: FMA:15405 +xref: http://linkedlifedata.com/resource/umls/id/C1301431 +xref: Ileal:veins +xref: MA:0002140 +xref: NCIT:C53046 +xref: UMLS:C1301431 {source="ncithesaurus:Ileal_Vein"} +is_a: UBERON:0002017 ! portal vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0002116 ! ileum +relationship: drains UBERON:0002116 ! ileum +relationship: part_of UBERON:0001138 ! superior mesenteric vein +relationship: tributary_of UBERON:0001138 {source="FMA", source="Wikipedia"} ! superior mesenteric vein + +[Term] +id: UBERON:0001218 +name: middle colic vein +def: "The middle colic vein drains the transverse colon. It is a tributary of the superior mesenteric vein, and follows the path of its corresponding artery, the middle colic artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/Middle_colic_vein] +subset: uberon_slim +synonym: "vena colica media" RELATED LATIN [http://en.wikipedia.org/wiki/Middle_colic_vein] +synonym: "vena colica media (intermedia)" EXACT [] +xref: EMAPA:37174 {source="MA:th"} +xref: FMA:15406 +xref: http://en.wikipedia.org/wiki/Middle_colic_vein +xref: http://www.snomedbrowser.com/Codes/Details/9018004 +xref: MA:0002181 +xref: OpenCyc:Mx4rvywYIpwpEbGdrcN5Y29ycA +is_a: UBERON:0002017 ! portal vein +intersection_of: UBERON:0002017 ! portal vein +intersection_of: drains UBERON:0001157 ! transverse colon +intersection_of: tributary_of UBERON:0001138 ! superior mesenteric vein +relationship: drains UBERON:0001157 ! transverse colon +relationship: part_of UBERON:0001138 ! superior mesenteric vein +relationship: tributary_of UBERON:0001138 ! superior mesenteric vein + +[Term] +id: UBERON:0001219 +name: ileocolic vein +def: "The ileocolic vein is a vein which drains the ileum, colon, and cecum. [WP,unvetted]." [http://en.wikipedia.org/wiki/Ileocolic_vein] +subset: uberon_slim +synonym: "vena ileocolica" RELATED LATIN [http://en.wikipedia.org/wiki/Ileocolic_vein] +xref: EMAPA:37150 {source="MA:th"} +xref: FMA:15408 +xref: http://linkedlifedata.com/resource/umls/id/C0226744 +xref: http://www.snomedbrowser.com/Codes/Details/36208008 +xref: Ileocolic:vein +xref: MA:0002141 +xref: NCIT:C53047 +xref: UMLS:C0226744 {source="ncithesaurus:Ileocolic_Vein"} +is_a: UBERON:0001217 ! ileal vein +intersection_of: UBERON:0002017 ! portal vein +intersection_of: drains UBERON:0001153 ! caecum +intersection_of: drains UBERON:0001155 ! colon +intersection_of: drains UBERON:0002116 ! ileum +intersection_of: tributary_of UBERON:0001138 ! superior mesenteric vein +relationship: drains UBERON:0001153 ! caecum +relationship: drains UBERON:0001155 ! colon + +[Term] +id: UBERON:0001220 +name: quadratus lumborum +def: "An abdominal muscle that inserts on the last rib and transverse processes of lumbar vertebrae. It is irregular and quadrilateral in shape, and broader below than above." [http://en.wikipedia.org/wiki/Quadratus_lumborum_muscle] +subset: organ_slim +subset: uberon_slim +synonym: "muscle of posterior abdominal wall" EXACT [] +xref: EMAPA:18524 +xref: FMA:15569 +xref: http://en.wikipedia.org/wiki/Quadratus_lumborum_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224380 +xref: MA:0002362 +xref: NCIT:C33440 +xref: OpenCyc:Mx4rvj1wcpwpEbGdrcN5Y29ycA +xref: UMLS:C0224380 {source="ncithesaurus:Quadratus_Lumborum"} +is_a: UBERON:0002378 ! muscle of abdomen +is_a: UBERON:0003897 ! axial muscle +is_a: UBERON:0004518 ! muscle of vertebral column +relationship: has_muscle_insertion UBERON:0001077 {notes="Last rib and transverse processes of lumbar vertebrae", source="dbpedia"} ! transverse process of vertebra +relationship: has_muscle_insertion UBERON:0002228 {notes="Last rib and transverse processes of lumbar vertebrae", source="dbpedia"} ! rib +relationship: has_muscle_insertion UBERON:0002414 {notes="Last rib and transverse processes of lumbar vertebrae", source="dbpedia"} ! lumbar vertebra + +[Term] +id: UBERON:0001221 +name: transversus abdominis muscle +def: "The lateral abdominal wall muscle that is deep to the internal oblique." [ISBN:9781435464339, UBERON:cjm] +subset: organ_slim +subset: uberon_slim +synonym: "musculus transversus abdominis" EXACT LATIN [FMA:TA] +synonym: "musculus transversus abdominis" EXACT LATIN [FMA:15570, FMA:TA] +synonym: "transversalis" RELATED [http://en.wikipedia.org/wiki/Transversus_abdominis_muscle] +synonym: "transversalis muscle" RELATED [http://en.wikipedia.org/wiki/Transversus_abdominis_muscle] +synonym: "transverse abdominal" EXACT [FMA:15570] +synonym: "transverse abdominal" RELATED [http://en.wikipedia.org/wiki/Transversus_abdominis_muscle] +synonym: "transverse abdominal muscle" RELATED [http://en.wikipedia.org/wiki/Transversus_abdominis_muscle] +synonym: "transverse abdominis" RELATED [http://en.wikipedia.org/wiki/Transversus_abdominis_muscle] +synonym: "transverse abdominus" RELATED [http://en.wikipedia.org/wiki/Transversus_abdominis_muscle] +synonym: "transversis abdominus" EXACT LATIN [http://en.wikipedia.org/wiki/Transversus_abdominis_muscle] +synonym: "transversus" RELATED [http://en.wikipedia.org/wiki/Transversus_abdominis_muscle] +synonym: "transversus abdominis" EXACT LATIN [] +synonym: "transversus abdominis" RELATED [http://en.wikipedia.org/wiki/Transversus_abdominis_muscle] +synonym: "transversus abdominus" RELATED [http://en.wikipedia.org/wiki/Transversus_abdominis_muscle] +synonym: "transversus abdominus muscle" RELATED [http://en.wikipedia.org/wiki/Transversus_abdominis_muscle] +xref: EHDAA2:0002078 +xref: EHDAA:8254 +xref: EMAPA:18165 +xref: FMA:15570 +xref: http://en.wikipedia.org/wiki/Transversus_abdominis_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224378 +xref: http://www.snomedbrowser.com/Codes/Details/244949003 +xref: MA:0002396 +xref: NCIT:C53179 +xref: UMLS:C0224378 {source="ncithesaurus:Transversus_Abdominis"} +xref: VHOG:0000845 +is_a: UBERON:0002461 {is_inferred="true"} ! anterior abdominal wall muscle +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: immediately_deep_to UBERON:0005454 ! abdominal internal oblique muscle +intersection_of: part_of UBERON:0006635 ! anterior abdominal wall +relationship: immediately_deep_to UBERON:0005454 ! abdominal internal oblique muscle +relationship: innervated_by UBERON:0003727 {source="dbpedia"} ! intercostal nerve + +[Term] +id: UBERON:0001222 +name: right ureter +def: "An ureter that is part of a right side of organism [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:37373 {source="MA:th"} +xref: FMA:15571 +xref: http://linkedlifedata.com/resource/umls/id/C0227682 +xref: http://www.snomedbrowser.com/Codes/Details/276251000 +xref: MA:0001685 +xref: NCIT:C49327 +xref: UMLS:C0227682 {source="ncithesaurus:Right_Ureter"} +is_a: UBERON:0000056 ! ureter +intersection_of: UBERON:0000056 ! ureter +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: in_right_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0001223 +name: left ureter +def: "An ureter that is part of a left side of organism [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:37372 {source="MA:th"} +xref: FMA:15572 +xref: http://linkedlifedata.com/resource/umls/id/C0227683 +xref: http://www.snomedbrowser.com/Codes/Details/276340002 +xref: MA:0001684 +xref: NCIT:C49324 +xref: UMLS:C0227683 {source="ncithesaurus:Left_Ureter"} +is_a: UBERON:0000056 ! ureter +intersection_of: UBERON:0000056 ! ureter +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0001224 +name: renal pelvis +def: "A funnel shaped proximal portion of the ureter that is formed by convergence of the major calices [MP]." [MP:0004194] +comment: In this ontology, the renal pelvis is represented as the area of part-overlap between the kidney and the ureter +subset: pheno_slim +subset: uberon_slim +synonym: "kidney pelvis" EXACT [] +synonym: "p. renallis" RELATED LATIN [http://en.wikipedia.org/wiki/Renal_pelvis] +synonym: "pelvis of ureter" EXACT [] +synonym: "pyelum" RELATED [MP:0004194] +xref: CALOHA:TS-2230 +xref: EMAPA:17948 +xref: FMA:15575 +xref: GAID:426 +xref: galen:RenalPelvis +xref: http://linkedlifedata.com/resource/umls/id/C0227666 +xref: http://www.snomedbrowser.com/Codes/Details/362221007 +xref: MA:0000374 +xref: MESH:D007682 +xref: NCIT:C12887 +xref: Renal:pelvis +xref: UMLS:C0227666 {source="ncithesaurus:Renal_Pelvis"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004111 ! anatomical conduit +disjoint_from: UBERON:0002355 ! pelvic region of trunk +relationship: channel_for UBERON:0001088 ! urine +relationship: channels_from UBERON:0002113 ! kidney +relationship: channels_into UBERON:0000056 ! ureter +relationship: continuous_with UBERON:0000056 {source="FMA"} ! ureter +relationship: contributes_to_morphology_of UBERON:0000056 ! ureter +relationship: part_of UBERON:0002113 {source="MA"} ! kidney +relationship: part_of UBERON:0036295 ! renal pelvis/ureter + +[Term] +id: UBERON:0001225 +name: cortex of kidney +def: "Outer cortical portion of the kidney, between the renal capsule and the renal medulla." [http://en.wikipedia.org/wiki/Renal_cortex] +subset: pheno_slim +subset: uberon_slim +synonym: "cortex renalis" EXACT LATIN [FMA:15581, FMA:TA] +synonym: "kidney cortex" EXACT [] +synonym: "renal cortex" EXACT [] +xref: BTO:0001166 +xref: CALOHA:TS-0503 +xref: EMAPA:17952 +xref: FMA:15581 +xref: GAID:424 +xref: galen:CortexOfKidney +xref: http://linkedlifedata.com/resource/umls/id/C0022655 +xref: http://www.snomedbrowser.com/Codes/Details/362211004 +xref: MA:0000372 +xref: MESH:D007672 +xref: NCIT:C12739 +xref: Renal:cortex +xref: UMLS:C0022655 {source="ncithesaurus:Renal_Cortex"} +is_a: UBERON:0001851 ! cortex +intersection_of: UBERON:0001851 ! cortex +intersection_of: part_of UBERON:0002113 ! kidney +relationship: contributes_to_morphology_of UBERON:0002113 ! kidney +relationship: part_of UBERON:0008987 {source="FMA"} ! renal parenchyma + +[Term] +id: UBERON:0001226 +name: major calyx +def: "portion of the urinary collecting system within the kidney that drains several minor calyces" [http://anatomy.uams.edu/anatomyhtml/kidney.html] +comment: major calyx collects urine from several renal papillae; all major calyces unite to form the renal pelvis +subset: uberon_slim +synonym: "calices renales majores" EXACT LATIN [http://en.wikipedia.org/wiki/Major_calyx] +synonym: "calices renales majores" RELATED LATIN [http://en.wikipedia.org/wiki/Major_calyx] +synonym: "major calix" EXACT [] +xref: EMAPA:18677 +xref: FMA:15613 +xref: http://www.snomedbrowser.com/Codes/Details/1106008 +xref: MA:0001644 +xref: Major:calyx +is_a: UBERON:0006517 ! kidney calyx +is_a: UBERON:0013126 ! vein of abdomen +is_a: UBERON:0014401 ! renal venous blood vessel +relationship: drains UBERON:0001227 ! minor calyx + +[Term] +id: UBERON:0001227 +name: minor calyx +def: "portion of the urinary collecting system within the kidney that drains one renal papilla" [http://anatomy.uams.edu/anatomyhtml/kidney.html] +comment: one renal papilla projects into the lumen of one minor calyx; several minor calyces unite to form a major calyx +subset: uberon_slim +synonym: "calices renales minores" EXACT LATIN [http://en.wikipedia.org/wiki/Minor_calyx] +synonym: "calices renales minores" RELATED LATIN [http://en.wikipedia.org/wiki/Minor_calyx] +synonym: "minor calix" EXACT [] +xref: EMAPA:18678 +xref: FMA:15614 +xref: http://www.snomedbrowser.com/Codes/Details/26293004 +xref: MA:0001645 +xref: Minor:calyx +is_a: UBERON:0006517 ! kidney calyx +is_a: UBERON:0013126 ! vein of abdomen +is_a: UBERON:0014401 ! renal venous blood vessel +relationship: drains UBERON:0001228 ! renal papilla + +[Term] +id: UBERON:0001228 +name: renal papilla +def: "Tip of renal pyramid projecting into a minor calyx." [http://anatomy.uams.edu/anatomyhtml/kidney.html] +subset: pheno_slim +subset: uberon_slim +synonym: "kidney papilla" EXACT [MP:0011303] +xref: BTO:0003925 +xref: EMAPA:35727 +xref: FMA:15622 +xref: galen:RenalPapilla +xref: http://linkedlifedata.com/resource/umls/id/C0022666 +xref: http://www.snomedbrowser.com/Codes/Details/362214007 +xref: MA:0002730 +xref: MESH:D007679 +xref: NCIT:C33460 +xref: Renal:papilla +xref: UMLS:C0022666 {source="ncithesaurus:Renal_Papilla"} +is_a: UBERON:0000064 ! organ part +relationship: contributes_to_morphology_of UBERON:0001224 ! renal pelvis +relationship: part_of UBERON:0001224 ! renal pelvis +relationship: part_of UBERON:0001294 ! inner medulla of kidney + +[Term] +id: UBERON:0001229 +name: renal corpuscle +def: "the structure containing the glomerular capsule and the glomerulus that serves as the initial blood-filtering component of a nephron" [ISBN:0-683-40008-8, MP:0002827] +comment: Together, the Bowmans capsule and the glomerulus comprise the definitive renal corpuscle. http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "corpusculum renale" EXACT LATIN [] +synonym: "corpusculum renis" RELATED LATIN [http://en.wikipedia.org/wiki/Renal_corpuscle] +synonym: "cortical renal corpuscle" RELATED [MA:0000376] +synonym: "kidney corpuscle" RELATED [http://en.wikipedia.org/wiki/Renal_corpuscle] +synonym: "Malphigian corpuscle" EXACT MISSPELLING [MA:0000376] +synonym: "Malpighian corpuscle" EXACT [ZFA:0005281] +xref: BTO:0000333 +xref: CALOHA:TS-1317 +xref: EMAPA:28236 +xref: EMAPA:35726 +xref: EV:0100385 +xref: FMA:15625 +xref: http://linkedlifedata.com/resource/umls/id/C0227635 +xref: http://www.snomedbrowser.com/Codes/Details/361329009 +xref: MA:0000376 +xref: NCIT:C33456 +xref: Renal:corpuscle +xref: TAO:0005281 +xref: UMLS:C0227635 {source="ncithesaurus:Renal_Corpuscle"} +xref: VHOG:0001262 +xref: ZFA:0005281 +is_a: UBERON:0000063 ! organ subunit +relationship: contributes_to_morphology_of UBERON:0001225 ! cortex of kidney +relationship: contributes_to_morphology_of UBERON:0001285 ! nephron +relationship: part_of UBERON:0001225 ! cortex of kidney +relationship: part_of UBERON:0001285 {source="MA", source="ZFA"} ! nephron + +[Term] +id: UBERON:0001230 +name: glomerular capsule +def: "A cup-like sac at the expanded beginning of a tubular component of a nephron that contains the glomerulus" [http://en.wikipedia.org/wiki/Bowman%27s_capsule, MGI:pvb, MP:0002828] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "Bowman's capsule" EXACT [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] +synonym: "Bowman's capsule" RELATED [TAO:0005254] +synonym: "Bowmans capsule" EXACT [KUPO:0001001] +synonym: "capsula glomerularis" EXACT LATIN [] +synonym: "capsula glomeruli" RELATED LATIN [] +synonym: "Malphigian capsule" RELATED MISSPELLING [BTO:0002297] +synonym: "Malpighian capsule" RELATED [UBERO:cjm] +synonym: "Mueller capsule" RELATED [BTO:0002297] +synonym: "Muellerian capsule" RELATED [BTO:0002297] +synonym: "pronephric glomerular capsule" RELATED [TAO:0005310] +synonym: "renal glomerular capsule" EXACT [TAO:0005254] +xref: AAO:0010526 +xref: Bowman%27s:capsule +xref: BTO:0002297 +xref: EMAPA:27973 +xref: EMAPA:28257 +xref: FMA:15626 +xref: http://linkedlifedata.com/resource/umls/id/C0524448 +xref: http://www.snomedbrowser.com/Codes/Details/361331000 +xref: KUPO:0001001 +xref: MA:0001660 +xref: NCIT:C32225 +xref: TAO:0005254 +xref: TAO:0005310 +xref: UMLS:C0524448 {source="ncithesaurus:Bowman_s_Capsule"} +xref: ZFA:0005254 +xref: ZFA:0005310 +is_a: UBERON:0000064 ! organ part +disjoint_from: UBERON:0002015 ! kidney capsule +relationship: contributes_to_morphology_of UBERON:0001229 ! renal corpuscle +relationship: develops_from UBERON:0004199 ! S-shaped body +relationship: part_of UBERON:0001229 ! renal corpuscle + +[Term] +id: UBERON:0001231 +name: nephron tubule +alt_id: UBERON:0004210 +def: "An epithelial tube that is part of the nephron, the functional part of the kidney." [GO:0072078, http://en.wikipedia.org/wiki/Renal_tubule] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "kidney tubule" EXACT [GAID:433] +synonym: "renal tubule" BROAD [] +synonym: "tubulus renalis" EXACT [] +synonym: "uriniferous tubule" RELATED [MA:0000377] +xref: BTO:0000343 +xref: CALOHA:TS-1262 +xref: EFO:0003666 +xref: EMAPA:27782 +xref: EV:0100387 +xref: FMA:15627 +xref: GAID:433 +xref: http://linkedlifedata.com/resource/umls/id/C0022674 +xref: http://www.snomedbrowser.com/Codes/Details/361332007 +xref: MA:0000377 +xref: MESH:D007684 +xref: NCIT:C49274 +xref: Renal:tubule +xref: TAO:0001287 +xref: UMLS:C0022674 {source="ncithesaurus:Renal_Tubule"} +xref: ZFA:0001287 +is_a: UBERON:0004211 ! nephron epithelium +is_a: UBERON:0009773 {source="GO"} ! renal tubule +intersection_of: UBERON:0003914 {source="GO", source="MA", source="ZFA"} ! epithelial tube +intersection_of: part_of UBERON:0001285 {source="GO", source="MA", source="ZFA"} ! nephron +relationship: contributes_to_morphology_of UBERON:0001285 ! nephron +relationship: develops_from UBERON:0003918 {notes="checkme"} ! kidney mesenchyme + +[Term] +id: UBERON:0001232 +name: collecting duct of renal tubule +def: "The collecting duct is a portion of the nephron through which water flows, moving passively down its concentration gradient" [GO:0072044, http://en.wikipedia.org/wiki/Collecting_tubule] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "arcuate renal tubule" RELATED [http://en.wikipedia.org/wiki/Connecting_tubule] +synonym: "collecting duct" EXACT [GO:0072044] +synonym: "collecting duct system" RELATED [BTO:0000761] +synonym: "collecting tubule" RELATED [] +synonym: "junctional tube" RELATED [http://en.wikipedia.org/wiki/Connecting_tubule] +synonym: "kidney collecting duct" EXACT [] +synonym: "kidney collecting tubule" RELATED [] +synonym: "renal collecting tubule" EXACT [FMA:15628] +synonym: "tubulus renalis arcuatus" EXACT LATIN [http://en.wikipedia.org/wiki/Connecting_tubule] +synonym: "tubulus renalis colligens" EXACT [] +synonym: "ureteric tree" RELATED [EMAPA:28407] +xref: BTO:0000761 +xref: CALOHA:TS-0860 +xref: Collecting:tubule +xref: EMAPA:28407 +xref: EV:0100391 +xref: FMA:15628 +xref: GAID:434 +xref: http://www.snomedbrowser.com/Codes/Details/28202009 +xref: MA:0000371 +xref: MESH:D007685 +xref: TAO:0005294 +xref: ZFA:0005294 +is_a: UBERON:0006555 ! excretory tube +relationship: contributes_to_morphology_of UBERON:0002113 ! kidney +relationship: part_of UBERON:0001285 {notes="checkme", source="GO"} ! nephron + +[Term] +id: UBERON:0001233 +name: right adrenal gland +def: "An adrenal gland that is in the right side of the abdomen" [OBOL:automatic] +synonym: "glandula suprarenalis dexter" EXACT LATIN [] +synonym: "right suprarenal gland" EXACT [] +xref: EMAPA:37357 {source="MA:th"} +xref: FMA:15629 +xref: http://linkedlifedata.com/resource/umls/id/C0229559 +xref: http://www.snomedbrowser.com/Codes/Details/281625001 +xref: MA:0000719 +xref: NCIT:C49325 +xref: UMLS:C0229559 {source="ncithesaurus:Right_Adrenal_Gland"} +is_a: UBERON:0002369 ! adrenal gland +intersection_of: UBERON:0002369 ! adrenal gland +intersection_of: in_right_side_of UBERON:0000916 ! abdomen +relationship: in_right_side_of UBERON:0000916 ! abdomen + +[Term] +id: UBERON:0001234 +name: left adrenal gland +def: "An adrenal gland that is in the left side of the abdomen" [OBOL:automatic] +synonym: "glandula suprarenalis sinister" EXACT LATIN [] +synonym: "left suprarenal gland" EXACT [] +xref: EMAPA:37356 {source="MA:th"} +xref: FMA:15630 +xref: http://linkedlifedata.com/resource/umls/id/C0229560 +xref: http://www.snomedbrowser.com/Codes/Details/281626000 +xref: MA:0000718 +xref: NCIT:C49322 +xref: UMLS:C0229560 {source="ncithesaurus:Left_Adrenal_Gland"} +is_a: UBERON:0002369 ! adrenal gland +intersection_of: UBERON:0002369 ! adrenal gland +intersection_of: in_left_side_of UBERON:0000916 ! abdomen +relationship: in_left_side_of UBERON:0000916 ! abdomen + +[Term] +id: UBERON:0001235 +name: adrenal cortex +def: "the thick outer layer of the adrenal gland that produces and secretes steroid hormones such as corticosterone, estrone and aldosterone" [ISBN:0-683-40008-8, MGI:llw2, MP:0008288] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "adrenal gland cortex" EXACT [] +synonym: "cortex (glandula suprarenalis)" EXACT [] +synonym: "cortex glandulae suprarenalis" RELATED LATIN [http://en.wikipedia.org/wiki/Adrenal_cortex] +synonym: "cortex glandulae suprarenalis" RELATED [BTO:0000045] +synonym: "cortex of adrenal gland" EXACT [] +synonym: "cortex of suprarenal gland" EXACT [] +synonym: "suprarenal" RELATED [] +synonym: "suprarenal cortex" EXACT [] +xref: AAO:0011009 +xref: Adrenal:cortex +xref: BTO:0000045 +xref: CALOHA:TS-0015 +xref: EFO:0000237 +xref: EMAPA:18427 +xref: EV:0100136 +xref: FMA:15632 +xref: GAID:447 +xref: http://linkedlifedata.com/resource/umls/id/C0001613 +xref: http://www.snomedbrowser.com/Codes/Details/362584002 +xref: MA:0000118 +xref: MAT:0000494 +xref: MESH:D000302 +xref: NCIT:C12396 +xref: UMLS:C0001613 {source="ncithesaurus:Adrenal_Cortex"} +xref: VHOG:0001481 +xref: XAO:0000165 +is_a: UBERON:0001851 ! cortex +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0001851 ! cortex +intersection_of: part_of UBERON:0002369 ! adrenal gland +relationship: contributes_to_morphology_of UBERON:0002369 ! adrenal gland +relationship: part_of UBERON:0002369 ! adrenal gland + +[Term] +id: UBERON:0001236 +name: adrenal medulla +def: "the inner portion of the adrenal gland that consists mainly of chromaffin cells which produce, store and secrete neurotransmitters such as epinephrine and norepinephrine" [MESH:A06.407.071.265, MGI:llw2, MP:0008289] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "adrenal central medulla" RELATED [] +synonym: "adrenal gland medulla" EXACT [] +synonym: "chromaffin cells" RELATED [] +synonym: "medulla (glandula suprarenalis)" EXACT [] +synonym: "medulla glandulae suprarenalis" EXACT LATIN [FMA:15633, FMA:TA] +synonym: "medulla of adrenal gland" EXACT [OBOL:automatic] +synonym: "medulla of glandula suprarenalis" RELATED [BTO:0000049] +synonym: "medulla of suprarenal gland" EXACT [] +synonym: "suprarenal medulla" EXACT [] +xref: AAO:0011010 +xref: Adrenal:medulla +xref: BTO:0000049 +xref: CALOHA:TS-0018 +xref: EFO:0000852 +xref: EMAPA:18428 +xref: EV:0100137 +xref: FMA:15633 +xref: GAID:451 +xref: http://linkedlifedata.com/resource/umls/id/C0001629 +xref: http://www.snomedbrowser.com/Codes/Details/362585001 +xref: MA:0000119 +xref: MAT:0000495 +xref: MESH:D019439 +xref: NCIT:C12397 +xref: UMLS:C0001629 {source="ncithesaurus:Adrenal_Medulla"} +xref: VHOG:0001378 +xref: XAO:0000166 +is_a: UBERON:0000958 ! medulla of organ +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0000958 ! medulla of organ +intersection_of: part_of UBERON:0002369 ! adrenal gland +relationship: contributes_to_morphology_of UBERON:0002369 ! adrenal gland +relationship: part_of UBERON:0002369 ! adrenal gland +relationship: surrounded_by UBERON:0001235 {source="Wikipedia"} ! adrenal cortex + +[Term] +id: UBERON:0001237 +name: paraaortic body +def: "A chromaffin paraganglion located at the bifurcation of the aorta or at the origin of the inferior mesenteric artery." [http://en.wikipedia.org/wiki/Organ_of_Zuckerkandl] +comment: The largest chromaffin paraganglia, and the largest source of circulating catecholamines in the fetus and young infants, and gradually atrophies to microscopic loci[WP] +subset: organ_slim +subset: uberon_slim +synonym: "organ of Zuckerkandl" EXACT [] +synonym: "para-aortic body" RELATED [] +synonym: "paraganglia of Zuckerkandl" RELATED PLURAL [] +synonym: "paraganglion of Zuckerkandl" EXACT [EMAPA:18223] +xref: EMAPA:18223 +xref: FMA:15647 +xref: GAID:444 +xref: http://en.wikipedia.org/wiki/Organ_of_Zuckerkandl +xref: http://linkedlifedata.com/resource/umls/id/C0442134 +xref: http://www.snomedbrowser.com/Codes/Details/276159005 +xref: MA:0001137 +xref: MESH:D010220 +xref: NCIT:C25316 +xref: UMLS:C0442134 {source="ncithesaurus:Paraaortic"} +is_a: UBERON:0012279 ! chromaffin paraganglion + +[Term] +id: UBERON:0001238 +name: lamina propria of small intestine +def: "Lamina propria that is part_of the small intestine." [GOC:Obol] +synonym: "lamina propria mucosa of small bowel" EXACT [OBOL:automatic] +synonym: "lamina propria mucosa of small intestine" EXACT [OBOL:automatic] +synonym: "lamina propria mucosae of small bowel" EXACT [OBOL:automatic] +synonym: "lamina propria mucosae of small intestine" EXACT [] +synonym: "lamina propria of mucosa of small intestine" EXACT [] +synonym: "lamina propria of small bowel" EXACT [OBOL:automatic] +synonym: "small bowel lamina propria" EXACT [OBOL:automatic] +synonym: "small bowel lamina propria mucosa" EXACT [OBOL:automatic] +synonym: "small bowel lamina propria mucosae" EXACT [OBOL:automatic] +synonym: "small intestine lamina propria" EXACT [] +synonym: "small intestine lamina propria mucosa" EXACT [OBOL:automatic] +synonym: "small intestine lamina propria mucosae" EXACT [OBOL:automatic] +xref: EMAPA:35779 +xref: FMA:15651 +xref: http://linkedlifedata.com/resource/umls/id/C1711325 +xref: http://www.snomedbrowser.com/Codes/Details/63588008 +xref: MA:0001554 +xref: NCIT:C49297 +xref: UMLS:C1711325 {source="ncithesaurus:Small_Intestinal_Lamina_Propria"} +is_a: UBERON:0004780 ! gastrointestinal system lamina propria +intersection_of: UBERON:0000030 ! lamina propria +intersection_of: part_of UBERON:0002108 ! small intestine +relationship: part_of UBERON:0001204 ! mucosa of small intestine + +[Term] +id: UBERON:0001239 +name: muscularis mucosae of large intestine +def: "A muscularis mucosa that is part of a large intestine." [OBOL:automatic] +synonym: "lamina muscularis mucosae intestini crassi" EXACT LATIN [FMA:15655, FMA:TA] +synonym: "lamina muscularis of large intestine mucosa" EXACT [] +synonym: "lamina muscularis of large intestine mucous membrane" EXACT [] +synonym: "large intestine muscularis mucosa" EXACT [] +xref: EMAPA:37556 {source="MA:th"} +xref: FMA:15655 +xref: http://linkedlifedata.com/resource/umls/id/C0734776 +xref: MA:0002689 +xref: NCIT:C32928 +xref: UMLS:C0734776 {source="ncithesaurus:Large_Intestinal_Muscularis_Mucosa"} +is_a: UBERON:0001240 ! muscularis mucosae of intestine +is_a: UBERON:0004220 ! large intestine smooth muscle +intersection_of: UBERON:0006676 ! muscularis mucosa +intersection_of: part_of UBERON:0000059 ! large intestine +relationship: part_of UBERON:0001207 ! mucosa of large intestine + +[Term] +id: UBERON:0001240 +name: muscularis mucosae of intestine +def: "A muscularis mucosa that is part of a intestine." [OBOL:automatic] +synonym: "intestinal muscularis mucosa" RELATED [EMAPA:35442] +synonym: "intestine muscularis mucosa" EXACT [MA:0002694] +xref: EMAPA:35442 +xref: FMA:15691 +xref: MA:0002694 +is_a: UBERON:0004221 ! intestine smooth muscle +is_a: UBERON:0006676 ! muscularis mucosa +intersection_of: UBERON:0006676 ! muscularis mucosa +intersection_of: part_of UBERON:0000160 ! intestine +relationship: part_of UBERON:0001242 ! intestinal mucosa + +[Term] +id: UBERON:0001241 +name: crypt of Lieberkuhn of small intestine +def: "the tubular intestinal glands found in the mucosal membranes of the small intestine" [ISBN:0-683-40008-8, MP:0004841] +subset: pheno_slim +synonym: "crypt of Lieberkuhn of small bowel" EXACT [OBOL:automatic] +synonym: "crypt of Lieberkuhn of small intestine" EXACT [OBOL:automatic] +synonym: "intestinal gland of small bowel" EXACT [OBOL:automatic] +synonym: "intestinal gland of small intestine" EXACT [OBOL:automatic] +synonym: "lieberkuhn crypt of small bowel" EXACT [OBOL:automatic] +synonym: "lieberkuhn crypt of small intestine" EXACT [OBOL:automatic] +synonym: "small bowel crypt of Lieberkuhn" EXACT [OBOL:automatic] +synonym: "small bowel intestinal gland" EXACT [OBOL:automatic] +synonym: "small bowel lieberkuhn crypt" EXACT [OBOL:automatic] +synonym: "small intestinal crypt of Lieberkuhn" EXACT [] +synonym: "small intestine crypt of Lieberkuhn" EXACT [OBOL:automatic] +synonym: "small intestine intestinal gland" EXACT [OBOL:automatic] +synonym: "small intestine lieberkuhn crypt" EXACT [OBOL:automatic] +xref: EMAPA:35777 +xref: FMA:15693 +xref: http://linkedlifedata.com/resource/umls/id/C0227267 +xref: http://www.snomedbrowser.com/Codes/Details/52688008 +xref: MA:0001552 +xref: NCIT:C33565 +xref: UMLS:C0227267 {source="ncithesaurus:Small_Intestinal_Crypt_of_Lieberkuhn"} +is_a: UBERON:0001983 ! crypt of Lieberkuhn +intersection_of: UBERON:0001983 ! crypt of Lieberkuhn +intersection_of: part_of UBERON:0002108 ! small intestine +relationship: contributes_to_morphology_of UBERON:0002108 ! small intestine +relationship: part_of UBERON:0002108 ! small intestine + +[Term] +id: UBERON:0001242 +name: intestinal mucosa +def: "Mucosal layer that lines the intestine." [UBERON:cjm] +subset: pheno_slim +subset: uberon_slim +synonym: "bowel mucosa" EXACT [OBOL:automatic] +synonym: "bowel mucosa of organ" EXACT [OBOL:automatic] +synonym: "bowel mucous membrane" EXACT [OBOL:automatic] +synonym: "bowel organ mucosa" EXACT [OBOL:automatic] +synonym: "intestine mucosa" EXACT [] +synonym: "intestine mucosa of organ" EXACT [OBOL:automatic] +synonym: "intestine mucous membrane" EXACT [OBOL:automatic] +synonym: "intestine organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of bowel" EXACT [OBOL:automatic] +synonym: "mucosa of intestine" EXACT [] +synonym: "mucosa of organ of bowel" EXACT [OBOL:automatic] +synonym: "mucosa of organ of intestine" EXACT [OBOL:automatic] +synonym: "mucous membrane of bowel" EXACT [OBOL:automatic] +synonym: "mucous membrane of intestine" EXACT [OBOL:automatic] +synonym: "organ mucosa of bowel" EXACT [OBOL:automatic] +synonym: "organ mucosa of intestine" EXACT [OBOL:automatic] +synonym: "tunica mucosa intestini" EXACT [] +xref: BTO:0000642 +xref: EMAPA:35440 +xref: FMA:15695 +xref: GAID:296 +xref: http://linkedlifedata.com/resource/umls/id/C0021839 +xref: http://www.snomedbrowser.com/Codes/Details/362080002 +xref: MA:0001537 +xref: MESH:A03.492.411.369 +xref: NCIT:C49241 +xref: UMLS:C0021839 {source="ncithesaurus:Intestinal_Mucosa"} +is_a: UBERON:0004786 ! gastrointestinal system mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0000160 ! intestine +relationship: part_of UBERON:0001262 ! wall of intestine + +[Term] +id: UBERON:0001243 +name: serosa of intestine +def: "A serous membrane that is part of a wall of intestine [Automatically generated definition]." [OBOL:automatic] +synonym: "anatomical wall of bowel serosa" EXACT [OBOL:automatic] +synonym: "anatomical wall of bowel serous membrane" EXACT [OBOL:automatic] +synonym: "anatomical wall of intestine serosa" EXACT [OBOL:automatic] +synonym: "anatomical wall of intestine serous membrane" EXACT [OBOL:automatic] +synonym: "bowel anatomical wall serosa" EXACT [OBOL:automatic] +synonym: "bowel anatomical wall serous membrane" EXACT [OBOL:automatic] +synonym: "bowel wall serosa" EXACT [OBOL:automatic] +synonym: "bowel wall serous membrane" EXACT [OBOL:automatic] +synonym: "intestinal serosa" EXACT [] +synonym: "intestinal wall serosa" EXACT [OBOL:automatic] +synonym: "intestinal wall serous membrane" EXACT [OBOL:automatic] +synonym: "intestine anatomical wall serosa" EXACT [OBOL:automatic] +synonym: "intestine anatomical wall serous membrane" EXACT [OBOL:automatic] +synonym: "intestine serosa" EXACT [] +synonym: "intestine wall serosa" EXACT [OBOL:automatic] +synonym: "intestine wall serous membrane" EXACT [OBOL:automatic] +synonym: "serosa of anatomical wall of bowel" EXACT [OBOL:automatic] +synonym: "serosa of anatomical wall of intestine" EXACT [OBOL:automatic] +synonym: "serosa of bowel anatomical wall" EXACT [OBOL:automatic] +synonym: "serosa of bowel wall" EXACT [OBOL:automatic] +synonym: "serosa of intestinal wall" EXACT [OBOL:automatic] +synonym: "serosa of intestine anatomical wall" EXACT [OBOL:automatic] +synonym: "serosa of intestine wall" EXACT [OBOL:automatic] +synonym: "serosa of wall of bowel" EXACT [OBOL:automatic] +synonym: "serosa of wall of intestine" EXACT [OBOL:automatic] +synonym: "serous membrane of anatomical wall of bowel" EXACT [OBOL:automatic] +synonym: "serous membrane of anatomical wall of intestine" EXACT [OBOL:automatic] +synonym: "serous membrane of bowel anatomical wall" EXACT [OBOL:automatic] +synonym: "serous membrane of bowel wall" EXACT [OBOL:automatic] +synonym: "serous membrane of intestinal wall" EXACT [OBOL:automatic] +synonym: "serous membrane of intestine anatomical wall" EXACT [OBOL:automatic] +synonym: "serous membrane of intestine wall" EXACT [OBOL:automatic] +synonym: "serous membrane of wall of bowel" EXACT [OBOL:automatic] +synonym: "serous membrane of wall of intestine" EXACT [OBOL:automatic] +synonym: "visceral peritoneum of intestine" EXACT [] +synonym: "wall of bowel serosa" EXACT [OBOL:automatic] +synonym: "wall of bowel serous membrane" EXACT [OBOL:automatic] +synonym: "wall of intestine serosa" EXACT [OBOL:automatic] +synonym: "wall of intestine serous membrane" EXACT [OBOL:automatic] +xref: EMAPA:37619 {source="MA:th"} +xref: FMA:15701 +xref: MA:0001538 +is_a: UBERON:0004782 ! gastrointestinal system serosa +intersection_of: UBERON:0000042 ! serous membrane +intersection_of: part_of UBERON:0000160 ! intestine +relationship: part_of UBERON:0001262 ! wall of intestine + +[Term] +id: UBERON:0001244 +name: internal anal sphincter +def: "the smooth muscle ring, formed by an increase of the circular muscle fibers of the rectum, situated at the upper end of the anal canal, internal to the outer voluntary external anal sphincter" [MGI:anna, MP:0009055] +subset: pheno_slim +subset: uberon_slim +synonym: "circular layer of anal muscularis externa" EXACT [] +synonym: "circular layer of muscularis externa of anal canal" EXACT [] +synonym: "circular layer of muscularis propria of anal canal" EXACT [] +synonym: "circular muscle layer of anal canal" EXACT [] +xref: EMAPA:18266 +xref: FMA:15710 +xref: http://en.wikipedia.org/wiki/Internal_anal_sphincter +xref: http://linkedlifedata.com/resource/umls/id/C0224394 +xref: MA:0001534 +xref: NCIT:C32833 +xref: UMLS:C0224394 {source="ncithesaurus:Internal_Anal_Sphincter"} +is_a: UBERON:0004231 {source="MA"} ! anal region smooth muscle +is_a: UBERON:0004916 ! anal sphincter +is_a: UBERON:0007521 ! smooth muscle sphincter +is_a: UBERON:0012368 ! circular muscle layer of muscular coat +relationship: surrounds UBERON:0000159 ! anal canal + +[Term] +id: UBERON:0001245 +name: anus +def: "Orifice at the opposite end of an animal's digestive tract from the mouth. Its function is to expel feces, unwanted semi-solid matter produced during digestion, which, depending on the type of animal, may be one or more of: matter which the animal cannot digest, such as bones; food material after all the nutrients have been extracted, for example cellulose or lignin; ingested matter which would be toxic if it remained in the digestive tract; and dead or excess gut bacteria and other endosymbionts." [http://en.wikipedia.org/wiki/Anus, ZFIN:curator] +subset: pheno_slim +subset: uberon_slim +synonym: "anal opening" EXACT [] +synonym: "anal orifice" EXACT [] +synonym: "opening of terminal part of digestive tract" EXACT [] +synonym: "proctodeum" RELATED [] +xref: BTO:0001680 +xref: CALOHA:TS-2005 +xref: EV:0100082 +xref: FBbt:00003148 +xref: FMA:15711 +xref: GAID:312 +xref: galen:Anus +xref: http://en.wikipedia.org/wiki/Anus +xref: http://linkedlifedata.com/resource/umls/id/C0003461 +xref: http://www.snomedbrowser.com/Codes/Details/181262009 +xref: MA:0000331 +xref: MESH:A03.492.411.495.767.288 +xref: NCIT:C43362 +xref: OpenCyc:Mx4rvVjaEZwpEbGdrcN5Y29ycA +xref: TADS:0000066 +xref: TGMA:0001279 +xref: UMLS:C0003461 {source="ncithesaurus:Anus"} +xref: WBbt:0005364 +is_a: UBERON:0000161 ! orifice +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000161 ! orifice +intersection_of: distalmost_part_of UBERON:0001555 ! digestive tract +relationship: develops_from UBERON:0000931 ! proctodeum +relationship: distalmost_part_of UBERON:0001555 ! digestive tract +relationship: part_of UBERON:0001555 ! digestive tract + +[Term] +id: UBERON:0001246 +name: interlobular bile duct +def: "The canals that carry bile in the liver between the intralobular ducts and the biliary ductules; interlobular bile ducts are part of the interlobular portal triad." [MP:0009500] +subset: pheno_slim +synonym: "interlobular ductule" EXACT [MP:0009500] +xref: FMA:15767 +xref: http://en.wikipedia.org/wiki/Interlobular_bile_ducts +xref: http://linkedlifedata.com/resource/umls/id/C0227515 +xref: http://www.snomedbrowser.com/Codes/Details/83488001 +xref: MA:0002668 +xref: NCIT:C32827 +xref: UMLS:C0227515 {source="ncithesaurus:Interlobular_Bile_Duct"} +is_a: UBERON:0003704 {souce="MA-part-of", source="FMA"} ! intrahepatic bile duct +relationship: connects UBERON:0004058 ! biliary ductule +relationship: connects UBERON:0014719 ! intralobular duct +relationship: contributes_to_morphology_of UBERON:0001279 ! portal triad +relationship: part_of UBERON:0001279 {source="FMA", source="MA", source="MP"} ! portal triad + +[Term] +id: UBERON:0001247 +name: falciform ligament +def: "A ligament that attaches the liver to the anterior body wall. It is a broad and thin antero-posterior peritoneal fold, falciform in shape, its base being directed downward and backward and its apex upward and backward. It is a remnant of the ventral mesentery of the fetus. It is situated in an antero-posterior plane but lies obliquely, so that one surface faces forward and is in contact with the peritoneum behind the right rectus and the diaphragm, while the other is directed backward and is in contact with the left lobe of the liver. It is attached by its left margin to the under surface of the diaphragm and the posterior surface of the sheath of the right Rectus as low down as the umbilicus; by its right margin it extends from the notch on the anterior margin of the liver, as far back as the posterior surface. It is composed of two layers of peritoneum closely united together. Its base or free edge contains between its layers the round ligament and the paraumbilical veins[WP]." [http://en.wikipedia.org/wiki/Falciform_ligament] +subset: uberon_slim +synonym: "falciform ligament of liver" EXACT [] +synonym: "ligamentum falciforme (hepatis)" EXACT [] +synonym: "ligamentum falciforme hepatis" EXACT LATIN [FMA:15823, FMA:TA] +xref: EHDAA2:0000499 +xref: EHDAA:4856 +xref: EMAPA:18288 +xref: Falciform:ligament +xref: FMA:15823 +xref: http://linkedlifedata.com/resource/umls/id/C0230240 +xref: http://www.snomedbrowser.com/Codes/Details/362705001 +xref: MA:0001622 +xref: NCIT:C32582 +xref: UMLS:C0230240 {source="ncithesaurus:Falciform_Ligament"} +xref: VHOG:0000355 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0013139 ! ligament of liver +intersection_of: UBERON:0008845 ! nonskeletal ligament +intersection_of: attaches_to UBERON:0000309 ! body wall +intersection_of: attaches_to UBERON:0002107 ! liver +relationship: attaches_to UBERON:0000309 ! body wall +relationship: attaches_to UBERON:0002107 ! liver +relationship: part_of UBERON:0005626 {source="MA"} ! ventral mesogastrium + +[Term] +id: UBERON:0001248 +name: hilum of spleen +def: "The splenic hilum is a location on the surface of the spleen. It is the point of attachment for the gastrosplenic ligament, and the point of insertion for the splenic artery and splenic vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Splenic_hilum] +subset: uberon_slim +synonym: "hilum" BROAD [EMAPA:19303] +synonym: "hilum lienale" EXACT LATIN [FMA:15841, FMA:TA] +synonym: "hilum splenicum" EXACT LATIN [FMA:15841, FMA:TA] +synonym: "hilum splenicum" RELATED LATIN [http://en.wikipedia.org/wiki/Splenic_hilum] +synonym: "spleen hilum" EXACT [] +synonym: "splenic hilum" EXACT [] +xref: EMAPA:19303 +xref: FMA:15841 +xref: http://linkedlifedata.com/resource/umls/id/C0229685 +xref: http://www.snomedbrowser.com/Codes/Details/245377005 +xref: MA:0002670 +xref: NCIT:C33601 +xref: Splenic:hilum +xref: UMLS:C0229685 {source="ncithesaurus:Splenic_Hilum"} +is_a: UBERON:0004885 ! hilum +intersection_of: UBERON:0004885 ! hilum +intersection_of: part_of UBERON:0002106 ! spleen +relationship: part_of UBERON:0002106 ! spleen + +[Term] +id: UBERON:0001249 +name: spleen lymphoid follicle +alt_id: UBERON:0003969 +def: "The area of the white pulp where the affinity maturation of B cells and the generation of memory B cells and plasma cells occur" [CL:tm, https://github.com/obophenotype/uberon/issues/6, MP:0008470] +subset: pheno_slim +synonym: "lymphatic follicle of spleen" EXACT [FMA:15843] +synonym: "lymphoid follicle of spleen" EXACT [FMA:15843] +synonym: "lymphoid nodule of spleen" EXACT [FMA:15843] +synonym: "Malpighian body" EXACT [FMA:15843] +synonym: "spleen B cell follicle" EXACT [CL:tm] +synonym: "spleen lymphoid follicle" EXACT [MA:0002672] +synonym: "spleen lymphoid nodule" RELATED [MA:0002672] +synonym: "splenic B cell follicle" EXACT [CL:tm] +synonym: "splenic lymphatic follicle" EXACT [FMA:15843] +synonym: "splenic lymphoid follicle" EXACT [] +xref: EMAPA:35804 +xref: http://linkedlifedata.com/resource/umls/id/C1519475 +xref: http://www.snomedbrowser.com/Codes/Details/35845000 +xref: MA:0002672 +xref: NCIT:C33602 +xref: UMLS:C1519475 {source="ncithesaurus:Splenic_Lymphoid_Follicle"} +is_a: UBERON:0000444 ! lymphoid follicle +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0000444 ! lymphoid follicle +intersection_of: part_of UBERON:0002106 ! spleen +relationship: contributes_to_morphology_of UBERON:0001959 ! white pulp of spleen +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan +relationship: part_of UBERON:0001959 {source="CL:tm", source="MA"} ! white pulp of spleen +relationship: part_of UBERON:0006561 {source="FMA"} ! non-lymphatic part of lymphoid system + +[Term] +id: UBERON:0001250 +name: red pulp of spleen +def: "the parenchymatous tissue network of the spleen that consists of loose plates or cords (sinuses) infiltrated with red blood cells where most of the blood filtration occurs and degenerate erythrocytes are removed from the circulation" [MGI:csmith, MP:0002356] +subset: pheno_slim +subset: uberon_slim +synonym: "pulpa rubra" EXACT LATIN [FMA:15844, FMA:TA] +synonym: "pulpa splenica" RELATED LATIN [http://en.wikipedia.org/wiki/Red_pulp] +synonym: "red pulp" EXACT [] +synonym: "spleen red pulp" EXACT [] +synonym: "splenic red pulp" EXACT [] +xref: CALOHA:TS-1263 +xref: EMAPA:35806 +xref: FMA:15844 +xref: http://linkedlifedata.com/resource/umls/id/C0229687 +xref: http://www.snomedbrowser.com/Codes/Details/27579002 +xref: MA:0000756 +xref: NCIT:C12992 +xref: Red:pulp +xref: UMLS:C0229687 {source="ncithesaurus:Splenic_Red_Pulp"} +is_a: UBERON:1000023 ! spleen pulp +relationship: contributes_to_morphology_of UBERON:0002106 ! spleen +relationship: present_in_taxon NCBITaxon:7955 {source="https://doi.org/10.1177/0192623311409597"} + +[Term] +id: UBERON:0001251 +name: marginal zone of spleen +def: "the zone between the red and white pulp of the spleen containing numerous macrophages and lymphocytes, and a rich plexus of sinusoids supplied by white pulp arterioles carrying blood-borne antigens" [ISBN:0-683-40008-8, MP:0002362] +subset: pheno_slim +synonym: "junctional zone of spleen" EXACT [] +synonym: "marginal zone" BROAD [http://en.wikipedia.org/wiki/Marginal_zone] +synonym: "spleen marginal zone" EXACT [MA:0000755] +xref: CALOHA:TS-2395 +xref: EMAPA:36650 +xref: FMA:15852 +xref: http://linkedlifedata.com/resource/umls/id/C1711368 +xref: MA:0000755 +xref: Marginal:zone +xref: NCIT:C49767 +xref: UMLS:C1711368 {source="ncithesaurus:Marginal_Zone"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +disjoint_from: UBERON:0004879 ! marginal zone of embryo +relationship: adjacent_to UBERON:0001250 ! red pulp of spleen +relationship: adjacent_to UBERON:0001959 ! white pulp of spleen +relationship: part_of UBERON:0002106 ! spleen + +[Term] +id: UBERON:0001252 +name: adventitia of ureter +def: "An adventitia that is part of a ureter." [OBOL:automatic] +synonym: "external adventitia of ureter" EXACT [] +synonym: "tunica adventitia (ureter)" EXACT LATIN [FMA:15892, FMA:TA] +synonym: "tunica adventitia ureteris" EXACT LATIN [FMA:15892, FMA:TA] +synonym: "ureter adventitia" EXACT [] +synonym: "ureteral adventitia" EXACT [] +xref: EMAPA:28114 +xref: FMA:15892 +xref: http://www.snomedbrowser.com/Codes/Details/392273001 +xref: http://www.snomedbrowser.com/Codes/Details/47879001 +xref: MA:0002652 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005742 ! adventitia +intersection_of: UBERON:0005742 ! adventitia +intersection_of: part_of UBERON:0000056 ! ureter +relationship: part_of UBERON:0009916 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! wall of ureter + +[Term] +id: UBERON:0001253 +name: lamina propria of ureter +def: "A lamina propria that is part of a ureter [Automatically generated definition]." [OBOL:automatic] +synonym: "lamina propria mucosa of ureter" EXACT [OBOL:automatic] +synonym: "lamina propria mucosae of ureter" EXACT [OBOL:automatic] +synonym: "ureter lamina propria" EXACT [] +synonym: "ureter lamina propria mucosa" EXACT [OBOL:automatic] +synonym: "ureter lamina propria mucosae" EXACT [OBOL:automatic] +xref: EMAPA:28841 +xref: FMA:15896 +xref: http://www.snomedbrowser.com/Codes/Details/2771005 +xref: MA:0002653 +is_a: UBERON:0000030 ! lamina propria +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0000030 ! lamina propria +intersection_of: part_of UBERON:0000056 ! ureter +relationship: part_of UBERON:0004980 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! mucosa of ureter + +[Term] +id: UBERON:0001254 +name: urothelium of ureter +def: "The luminal epithelium of the tube that conducts the urine from the renal pelvis to the bladder[MP]" [MP:0000535] +subset: pheno_slim +synonym: "transitional epithelium of ureter" EXACT [] +synonym: "ureter luminal urothelium" RELATED INCONSISTENT [MP:0000535] +synonym: "ureter transitional epithelium" EXACT [] +synonym: "ureter urothelium" EXACT [] +xref: EMAPA:28089 +xref: FMA:15897 +xref: MA:0002655 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0000365 ! urothelium +is_a: UBERON:0012275 ! meso-epithelium +intersection_of: UBERON:0000365 ! urothelium +intersection_of: part_of UBERON:0000056 ! ureter +relationship: contributes_to_morphology_of UBERON:0000056 ! ureter +relationship: part_of UBERON:0000056 ! ureter + +[Term] +id: UBERON:0001255 +name: urinary bladder +def: "distensible musculomembranous organ situated in the anterior part of the pelvic cavity in which urine collects before excretion[MP]." [http://en.wikipedia.org/wiki/Urinary_bladder, MGI:anna] +subset: efo_slim +subset: major_organ +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "bladder" BROAD [EHDAA2:0000174] +synonym: "urocyst" RELATED [http://en.wikipedia.org/wiki/Urinary_bladder] +synonym: "vesica" RELATED [BTO:0001418] +synonym: "vesica urinaria" EXACT LATIN [http://en.wikipedia.org/wiki/Urinary_bladder] +xref: AAO:0000623 +xref: BTO:0001418 +xref: CALOHA:TS-1090 +xref: EFO:0000290 +xref: EHDAA2:0000174 +xref: EHDAA:9328 +xref: EMAPA:18321 +xref: EV:0100098 +xref: FMA:15900 +xref: GAID:0000004 +xref: galen:UrinaryBladder +xref: http://linkedlifedata.com/resource/umls/id/C0005682 +xref: http://www.snomedbrowser.com/Codes/Details/302512001 +xref: MA:0000380 +xref: MAT:0000122 +xref: MESH:A05.810.161 +xref: MIAA:0000122 +xref: NCIT:C12414 +xref: OpenCyc:Mx4rvVjMmZwpEbGdrcN5Y29ycA +xref: UMLS:C0005682 {source="ncithesaurus:Bladder"} +xref: Urinary:bladder +xref: VHOG:0000740 +xref: XAO:0000154 +is_a: UBERON:0002075 ! viscus +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0018707 {source="BTO"} ! bladder organ +relationship: develops_from UBERON:0000164 {notes="upper part of UG sinus"} ! primitive urogenital sinus +relationship: part_of UBERON:0001556 {source="FMA"} ! lower urinary tract + +[Term] +id: UBERON:0001256 +name: wall of urinary bladder +def: "An anatomical wall that lines the insider of a urinary bladder." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "anatomical wall of bladder" EXACT [OBOL:automatic] +synonym: "anatomical wall of urinary bladder" EXACT [OBOL:automatic] +synonym: "bladder anatomical wall" EXACT [OBOL:automatic] +synonym: "bladder wall" EXACT [OBOL:automatic] +synonym: "urinary bladder anatomical wall" EXACT [OBOL:automatic] +synonym: "urinary bladder wall" EXACT [] +synonym: "wall of bladder" EXACT [OBOL:automatic] +xref: BTO:0001462 +xref: EMAPA:35175 +xref: FMA:15902 +xref: http://linkedlifedata.com/resource/umls/id/C0458421 +xref: http://www.snomedbrowser.com/Codes/Details/362225003 +xref: MA:0002493 +xref: NCIT:C48941 +xref: UMLS:C0458421 {source="ncithesaurus:Bladder_Wall"} +is_a: UBERON:0000060 ! anatomical wall +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0001255 ! urinary bladder +relationship: part_of UBERON:0001255 ! urinary bladder + +[Term] +id: UBERON:0001257 +name: trigone of urinary bladder +def: "the smooth triangular region of the wall of the urinary bladder formed by the two ureteral orifices and the internal urethral orifice; it is an area in which the muscle fibers are closely adherent to the mucosa" [MGI:anna, MP:0011768] +subset: pheno_slim +subset: uberon_slim +synonym: "bladder trigone" EXACT [] +synonym: "deep trigone" EXACT [] +synonym: "dorsal bladder neck" RELATED [EMAPA:35174] +synonym: "Lieutaud's trigone" EXACT [] +synonym: "musculus trigoni vesicae profundus" EXACT LATIN [FMA:15910, FMA:TA] +synonym: "trigone of bladder" EXACT [] +synonym: "trigonum vesicae" EXACT LATIN [FMA:15910, FMA:TA] +synonym: "trigonum vesicae urinariae" RELATED LATIN [http://en.wikipedia.org/wiki/Trigone_of_urinary_bladder] +synonym: "urinary bladder trigone" EXACT [] +synonym: "vesical trigone" EXACT [] +xref: EMAPA:35174 +xref: FMA:15910 +xref: galen:TrigoneOfUrinaryBladder +xref: http://en.wikipedia.org/wiki/Trigone_of_urinary_bladder +xref: http://linkedlifedata.com/resource/umls/id/C0447586 +xref: http://www.snomedbrowser.com/Codes/Details/272663002 +xref: MA:0002492 +xref: NCIT:C12331 +xref: UMLS:C0447586 {source="ncithesaurus:Bladder_Trigone"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: contributes_to_morphology_of UBERON:0001255 ! urinary bladder +relationship: part_of UBERON:0006082 ! fundus of urinary bladder + +[Term] +id: UBERON:0001258 +name: neck of urinary bladder +def: "The constricted portion of the urinary bladder, formed by the meeting of its inferolateral surfaces proximal to the opening of the urethra[MP]." [http://en.wikipedia.org/wiki/Neck_of_urinary_bladder, MP:anna] +subset: pheno_slim +subset: uberon_slim +synonym: "bladder neck" EXACT [] +synonym: "cervix vesicae" EXACT LATIN [FMA:15912, FMA:TA] +synonym: "cervix vesicae urinariae" RELATED LATIN [http://en.wikipedia.org/wiki/Neck_of_urinary_bladder] +synonym: "collum vesicae" EXACT LATIN [FMA:15912, FMA:TA] +synonym: "neck of bladder" EXACT [] +synonym: "urinary bladder neck" EXACT [] +synonym: "vesical neck" EXACT [] +xref: EMAPA:36078 +xref: FMA:15912 +xref: galen:UrinaryBladderNeck +xref: http://en.wikipedia.org/wiki/Neck_of_urinary_bladder +xref: http://linkedlifedata.com/resource/umls/id/C0227716 +xref: http://www.snomedbrowser.com/Codes/Details/362227006 +xref: MA:0002491 +xref: NCIT:C12336 +xref: UMLS:C0227716 {source="ncithesaurus:Bladder_Neck"} +is_a: UBERON:0001560 ! neck of organ +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001560 ! neck of organ +intersection_of: part_of UBERON:0001255 ! urinary bladder +relationship: contributes_to_morphology_of UBERON:0001255 ! urinary bladder +relationship: part_of UBERON:0001255 ! urinary bladder + +[Term] +id: UBERON:0001259 +name: mucosa of urinary bladder +def: "the mucous membrane lining the urinary bladder" [MGI:anna, MP:0011766] +subset: efo_slim +subset: pheno_slim +synonym: "bladder mucosa" EXACT [] +synonym: "bladder mucous membrane" EXACT [OBOL:automatic] +synonym: "bladder organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of bladder" EXACT [OBOL:automatic] +synonym: "mucous membrane of bladder" EXACT [] +synonym: "mucous membrane of urinary bladder" EXACT [] +synonym: "tunica mucosa (vesica urinaria)" EXACT LATIN [FMA:15928, FMA:TA] +synonym: "tunica mucosa vesicae" EXACT LATIN [FMA:15928, FMA:TA] +synonym: "tunica mucosa vesicae urinariae" EXACT [MP:MP] +synonym: "urinary bladder mucosa" EXACT [] +synonym: "urinary bladder mucous membrane" EXACT [OBOL:automatic] +xref: EFO:0000293 +xref: EMAPA:35897 +xref: FMA:15928 +xref: galen:MucousMembraneOfUrinaryBladder +xref: http://linkedlifedata.com/resource/umls/id/C0227691 +xref: http://www.snomedbrowser.com/Codes/Details/362224004 +xref: MA:0001692 +xref: NCIT:C32205 +xref: UMLS:C0227691 {source="ncithesaurus:Bladder_Mucosa"} +is_a: UBERON:0000344 ! mucosa +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001255 ! urinary bladder +relationship: contributes_to_morphology_of UBERON:0001255 ! urinary bladder +relationship: part_of UBERON:0001256 ! wall of urinary bladder + +[Term] +id: UBERON:0001260 +name: serosa of urinary bladder +def: "A serous membrane that is part of a urinary bladder [Automatically generated definition]." [OBOL:automatic] +synonym: "bladder serosa" EXACT [] +synonym: "bladder serous membrane" EXACT [OBOL:automatic] +synonym: "serosa of bladder" EXACT [] +synonym: "serous coat of bladder" EXACT [] +synonym: "serous coat of urinary bladder" EXACT [] +synonym: "serous membrane of bladder" EXACT [OBOL:automatic] +synonym: "serous membrane of urinary bladder" EXACT [OBOL:automatic] +synonym: "tunica serosa (vesica urinaria)" EXACT LATIN [FMA:15932, FMA:TA] +synonym: "tunica serosa vesicae" EXACT LATIN [FMA:15932, FMA:TA] +synonym: "urinary bladder serosa" EXACT [] +synonym: "urinary bladder serous membrane" EXACT [OBOL:automatic] +synonym: "visceral peritoneum of urinary bladder" EXACT [] +xref: EMAPA:28661 +xref: FMA:15932 +xref: http://www.snomedbrowser.com/Codes/Details/5868002 +xref: MA:0001696 +is_a: UBERON:0000042 ! serous membrane +intersection_of: UBERON:0000042 ! serous membrane +intersection_of: part_of UBERON:0001255 ! urinary bladder +relationship: part_of UBERON:0001256 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! wall of urinary bladder + +[Term] +id: UBERON:0001261 +name: lamina propria of urinary bladder +def: "A lamina propria that is part of a urinary bladder [Automatically generated definition]." [OBOL:automatic] +synonym: "bladder lamina propria" EXACT [OBOL:automatic] +synonym: "bladder lamina propria mucosa" EXACT [OBOL:automatic] +synonym: "bladder lamina propria mucosae" EXACT [OBOL:automatic] +synonym: "lamina propria mucosa of bladder" EXACT [OBOL:automatic] +synonym: "lamina propria mucosa of urinary bladder" EXACT [OBOL:automatic] +synonym: "lamina propria mucosae of bladder" EXACT [OBOL:automatic] +synonym: "lamina propria mucosae of urinary bladder" EXACT [OBOL:automatic] +synonym: "lamina propria of bladder" EXACT [OBOL:automatic] +synonym: "urinary bladder lamina propria" EXACT [] +synonym: "urinary bladder lamina propria mucosa" EXACT [OBOL:automatic] +synonym: "urinary bladder lamina propria mucosae" EXACT [OBOL:automatic] +xref: EMAPA:30088 +xref: FMA:15935 +xref: http://linkedlifedata.com/resource/umls/id/C1706967 +xref: MA:0001695 +xref: NCIT:C48940 +xref: UMLS:C1706967 {source="ncithesaurus:Bladder_Lamina_Propria"} +is_a: UBERON:0000030 ! lamina propria +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0000030 ! lamina propria +intersection_of: part_of UBERON:0001255 ! urinary bladder +relationship: part_of UBERON:0001259 ! mucosa of urinary bladder + +[Term] +id: UBERON:0001262 +name: wall of intestine +def: "An anatomical wall that is part of a intestine [Automatically generated definition]." [OBOL:automatic] +synonym: "anatomical wall of bowel" EXACT [OBOL:automatic] +synonym: "anatomical wall of intestine" EXACT [OBOL:automatic] +synonym: "bowel anatomical wall" EXACT [OBOL:automatic] +synonym: "bowel wall" EXACT [OBOL:automatic] +synonym: "bowel wall" RELATED [MA:0001525] +synonym: "intestinal wall" EXACT [] +synonym: "intestine anatomical wall" EXACT [OBOL:automatic] +synonym: "intestine wall" EXACT [] +synonym: "wall of bowel" EXACT [OBOL:automatic] +xref: BTO:0000647 +xref: EMAPA:35444 +xref: FMA:15949 +xref: http://linkedlifedata.com/resource/umls/id/C1708548 +xref: MA:0001525 +xref: MA:0002693 +xref: NCIT:C49478 +xref: UMLS:C1708548 {source="ncithesaurus:Intestinal_Wall_Tissue"} +is_a: UBERON:0000328 ! gut wall +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0000160 ! intestine +relationship: part_of UBERON:0000160 ! intestine + +[Term] +id: UBERON:0001263 +name: pancreatic acinus +def: "The secretory units of the exocrine pancreas, where fluid containing digestive enzymes is produced; consists of a group of secretory cells surrounding a luminal space that connects to the pancreatic duct." [MP:0009145] +subset: pheno_slim +synonym: "acinus pancreaticus" EXACT LATIN [FMA:16011] +synonym: "pancreas acinus" EXACT [] +synonym: "pancreatic acinar" RELATED [TEMP:MP] +synonym: "pancreatic acini" RELATED PLURAL [] +xref: EMAPA:35651 +xref: FMA:16011 +xref: http://linkedlifedata.com/resource/umls/id/C0227578 +xref: http://www.snomedbrowser.com/Codes/Details/247604006 +xref: MA:0002417 +xref: NCIT:C49268 +xref: UMLS:C0227578 {source="ncithesaurus:Pancreatic_Acinus"} +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0013232 ! serous acinus +intersection_of: UBERON:0009842 ! glandular acinus +intersection_of: part_of UBERON:0000017 ! exocrine pancreas +relationship: contributes_to_morphology_of UBERON:0000017 ! exocrine pancreas +relationship: part_of UBERON:0007324 {source="FMA"} ! pancreatic lobule + +[Term] +id: UBERON:0001264 +name: pancreas +def: "An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes[GO]." [GO:0031016] +subset: efo_slim +subset: major_organ +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +xref: AAO:0010112 +xref: BTO:0000988 +xref: CALOHA:TS-0736 +xref: EFO:0000855 +xref: EHDAA2:0001367 +xref: EHDAA:6893 +xref: EMAPA:17503 +xref: EV:0100092 +xref: FMA:7198 +xref: GAID:334 +xref: galen:Pancreas +xref: http://en.wikipedia.org/wiki/Pancreas +xref: http://linkedlifedata.com/resource/umls/id/C0030274 +xref: http://www.snomedbrowser.com/Codes/Details/181277001 +xref: MA:0000120 +xref: MAT:0000075 +xref: MESH:D010179 +xref: MIAA:0000075 +xref: NCIT:C12393 +xref: OpenCyc:Mx4rvVimZZwpEbGdrcN5Y29ycA +xref: TAO:0000140 +xref: UMLS:C0030274 {source="ncithesaurus:Pancreas"} +xref: VHOG:0000050 +xref: XAO:0000136 +xref: ZFA:0000140 +is_a: UBERON:0002075 ! viscus +disjoint_from: UBERON:0010264 ! hepatopancreas +relationship: has_developmental_contribution_from UBERON:0003923 {source="Wikipedia"} ! dorsal pancreatic bud +relationship: has_developmental_contribution_from UBERON:0003924 {source="Wikipedia"} ! ventral pancreatic bud +relationship: has_part UBERON:0000016 ! endocrine pancreas + +[Term] +id: UBERON:0001265 +name: trabecula of spleen +def: "A trabecula that is part of a spleen." [OBOL:automatic] +synonym: "spleen trabeculum" EXACT [] +synonym: "splenic trabecula" EXACT [] +xref: EMAPA:35808 +xref: FMA:16027 +xref: http://en.wikipedia.org/wiki/Trabeculae_of_spleen +xref: http://linkedlifedata.com/resource/umls/id/C0229688 +xref: http://www.snomedbrowser.com/Codes/Details/61987002 +xref: MA:0000758 +xref: NCIT:C33607 +xref: UMLS:C0229688 {source="ncithesaurus:Splenic_Trabecula"} +is_a: UBERON:0000440 ! trabecula +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0000440 ! trabecula +intersection_of: part_of UBERON:0002106 ! spleen +relationship: part_of UBERON:1000024 {source="FMA"} ! parenchyma of spleen + +[Term] +id: UBERON:0001266 +name: splenic cord +def: "A structure found in the red pulp of the spleen between the sinusoids, consisting of fibrils and connective tissue cells with a large population of monocytes and macrophages. These cords contain half of the human body's monocytes as a reserve so that after tissue injury these monocytes can move in and aid locally sourced monocytes in wound healing. Erythrocytes pass through the cords of Billroth before entering the sinusoids. The passage into the sinusoids may be seen as a bottleneck, where erythrocytes need to be flexible in order to pass through. In disorders of erythrocyte shape and/or flexibility, such as hereditary spherocytosis, erythrocytes fail to pass through and get phagocytosed, causing extravascular hemolysis." [http://en.wikipedia.org/wiki/Cords_of_Billroth] +synonym: "cord of Billroth" EXACT [http://en.wikipedia.org/wiki/Cords_of_Billroth] +synonym: "cord of Bilroth" EXACT [FMA:16031] +xref: EMAPA:37752 {source="MA:th"} +xref: FMA:16031 +xref: http://en.wikipedia.org/wiki/Cords_of_Billroth +xref: http://linkedlifedata.com/resource/umls/id/C0735011 +xref: MA:0002671 +xref: NCIT:C33599 +xref: UMLS:C0735011 {source="ncithesaurus:Splenic_Cord"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0001250 {source="MA"} ! red pulp of spleen + +[Term] +id: UBERON:0001267 +name: femoral nerve +def: "The femoral nerve, the largest branch of the lumbar plexus, arises from the ventral divisions of the second, third, and fourth lumbar nerves. It descends through the fibers of the Psoas major, emerging from the muscle at the lower part of its lateral border, and passes down between it and the Iliacus, behind the iliac fascia; it then runs beneath the inguinal ligament, into the thigh, and splits into an anterior and a posterior division. Under the inguinal ligament, it is separated from the femoral artery by a portion of the Psoas major. [WP,unvetted]." [http://en.wikipedia.org/wiki/Femoral_nerve] +subset: uberon_slim +synonym: "anterior crural nerve" EXACT [] +synonym: "nervus femoralis" RELATED LATIN [http://en.wikipedia.org/wiki/Femoral_nerve] +xref: EHDAA2:0000507 +xref: EHDAA:5655 +xref: EMAPA:35343 +xref: Femoral:nerve +xref: FMA:16486 +xref: GAID:850 +xref: http://linkedlifedata.com/resource/umls/id/C0015808 +xref: http://www.snomedbrowser.com/Codes/Details/181051004 +xref: MA:0001167 +xref: MESH:D005267 +xref: NCIT:C52816 +xref: OpenCyc:Mx4rwGC03JwpEbGdrcN5Y29ycA +xref: UMLS:C0015808 {source="ncithesaurus:Femoral_Nerve"} +xref: VHOG:0001411 +is_a: UBERON:0003431 ! leg nerve +relationship: innervates UBERON:0004482 ! musculature of lower limb + +[Term] +id: UBERON:0001268 +name: peritoneal fluid +def: "Transudate contained in the peritoneal cavity." [FMA:16515] +subset: pheno_slim +subset: uberon_slim +xref: BTO:0001031 +xref: EMAPA:35683 +xref: FMA:16515 +xref: MA:0002531 +xref: ncithesaurus:Peritoneal_Fluid +xref: Peritoneal:fluid +is_a: UBERON:0007779 ! transudate +is_a: UBERON:0007794 {source="FMA"} ! secretion of serous gland +is_a: UBERON:0036217 ! coelomic fluid +intersection_of: UBERON:0007779 ! transudate +intersection_of: located_in UBERON:0001179 ! peritoneal cavity +relationship: located_in UBERON:0001179 ! peritoneal cavity + +[Term] +id: UBERON:0001269 +name: acetabular part of hip bone +def: "The acetabulum is a concave surface of the pelvis. The head of the femur meets with the pelvis at the acetabulum, forming the hip joint. There are three bones of the os coxae (hip bone) that come together to form the acetabulum. Contributing a little more than two-fifths of the structure is the ischium, which provides lower and side boundaries to the acetabulum. The ilium forms the upper boundary, providing a little less than two-fifths of the structure of the acetabulum. The rest is formed by the pubis, near the midline. It is bounded by a prominent uneven rim, which is thick and strong above, and serves for the attachment of the acetabular labrum, which reduces its opening, and deepens the surface for formation of the hip joint. At the lower part of the acetabulum is the acetabular notch, which is continuous with a circular depression, the acetabular fossa, at the bottom of the cavity of the acetabulum. The rest of the acetabulum is formed by a curved, crescent-moon shaped surface, the lunate surface, where the joint is made with the head of the femur. Its counterpart in the pectoral girdle is the glenoid fossa.[WP,unvetted]." [http://en.wikipedia.org/wiki/Acetabulum] +subset: pheno_slim +subset: uberon_slim +synonym: "acetabular region" EXACT [VHOG:0000974] +synonym: "acetabulum" EXACT [MA:0001335] +xref: AAO:0000770 +xref: EHDAA:10661 +xref: EMAPA:18346 +xref: FMA:16579 +xref: GAID:206 +xref: http://en.wikipedia.org/wiki/Acetabulum +xref: http://linkedlifedata.com/resource/umls/id/C0000962 +xref: http://www.snomedbrowser.com/Codes/Details/182027007 +xref: MA:0001335 +xref: MESH:A02.835.232.611.108 +xref: NCIT:C32042 +xref: OpenCyc:Mx4rwJlP9ZwpEbGdrcN5Y29ycA +xref: RETIRED_EHDAA2:0001427 +xref: UMLS:C0000962 {source="ncithesaurus:Acetabulum"} +xref: VHOG:0000974 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ +relationship: part_of UBERON:0001273 {source="Phenoscape"} ! ilium +relationship: part_of UBERON:0001486 {source="FMA"} ! hip joint + +[Term] +id: UBERON:0001270 +name: bony pelvis +def: "A ring of bone formed by the sacrum and the first few coccygeal vertebrae as the roof, the pubis and ischia as the floor and the ilia and the acetabular part of the ischia as the walls." [http://medical-dictionary.thefreedictionary.com/bony+pelvis] +synonym: "pelvis ossea" EXACT [] +synonym: "skeletal system of pelvis" EXACT [FMA:16580] +xref: FMA:16580 +xref: http://www.snomedbrowser.com/Codes/Details/46633002 +is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system +disjoint_from: UBERON:0002355 ! pelvic region of trunk +relationship: has_part UBERON:0001274 ! ischium +relationship: has_part UBERON:0001275 ! pubis +relationship: has_part UBERON:0003690 ! fused sacrum + +[Term] +id: UBERON:0001271 +name: pelvic girdle region +def: "The organism subdivision that includes the pelvic girdle skeleton and associated soft tissue. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc). Examples: There are only two instances in an organism, right and left pectoral girdle regions." [FMA:16581, FMA:23217, https://doi.org/10.1002/dvdy.22617, https://groups.google.com/d/topic/obo-anatomy/h4R4xKmINrw/discussion, https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +subset: uberon_slim +subset: vertebrate_core +synonym: "girdle - pelvic" RELATED [] +synonym: "pelvic girdle" RELATED INCONSISTENT [] +xref: EMAPA:37862 {source="MA:th"} +xref: FMA:16581 +xref: http://linkedlifedata.com/resource/umls/id/C0684083 +xref: http://www.snomedbrowser.com/Codes/Details/360010001 +xref: NCIT:C33291 +xref: UMLS:C0684083 {source="ncithesaurus:Pelvic_Girdle"} +xref: VSAO:0000304 +is_a: UBERON:0007823 ! appendage girdle region +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0007823 ! appendage girdle region +intersection_of: part_of UBERON:0010709 ! pelvic complex +disjoint_from: UBERON:0007832 ! pelvic girdle skeleton +relationship: has_skeleton UBERON:0007832 ! pelvic girdle skeleton +relationship: in_lateral_side_of UBERON:0002355 ! pelvic region of trunk +relationship: part_of UBERON:0002355 ! pelvic region of trunk +relationship: part_of UBERON:0010709 ! pelvic complex + +[Term] +id: UBERON:0001272 +name: innominate bone +def: "A fused bone consisting of the ilium, ischium and and pubis. Together with the sacrum and coccyx, it comprises the pelvis. [WP,modified]." [http://en.wikipedia.org/wiki/Hip_bone, https://github.com/obophenotype/uberon/issues/290, https://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "basipterygium" RELATED [] +synonym: "bone of pelvic girdle" BROAD [FMA:16585] +synonym: "coxal bone" EXACT [FMA:16585] +synonym: "hip bone" EXACT [FMA:16585] +synonym: "innominate" BROAD [] +synonym: "innominate bone" EXACT [FMA:16585] +synonym: "os coxa" EXACT LATIN [] +synonym: "os coxae" EXACT LATIN [FMA:16585, FMA:TA] +synonym: "os innominatum" RELATED LATIN [http://en.wikipedia.org/wiki/Hip_bone] +synonym: "pelvic bone" EXACT [FMA:16585] +xref: FMA:16585 +xref: GAID:205 +xref: Hip:bone +xref: http://www.snomedbrowser.com/Codes/Details/361776002 +xref: MESH:A02.835.232.611 +is_a: UBERON:0007830 ! pelvic girdle bone/zone +is_a: UBERON:0010428 {source="FMA"} ! flat bone +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0007832 ! pelvic girdle skeleton +relationship: part_of UBERON:0001464 {source="FMA"} ! hip + +[Term] +id: UBERON:0001273 +name: ilium +def: "Paired endochondral bone that is the dorsal-most of the pelvic bones, offering attachment areas for gluteal muscles on its main surface [PHENOSCAPE:ad]." [https://github.com/obophenotype/uberon/issues/105, https://github.com/obophenotype/uberon/issues/60, PHENOSCAPE:ad] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "iliac bone" EXACT [EMAPA:18726] +synonym: "ilium bone" EXACT [] +synonym: "illium" RELATED [] +synonym: "os iliacum" EXACT [] +synonym: "os ilii" EXACT [] +synonym: "os ilium" EXACT LATIN [FMA:16589, FMA:TA] +xref: AAO:0000772 +xref: CALOHA:TS-2200 +xref: EFO:0003049 +xref: EMAPA:18726 +xref: FMA:16589 +xref: GAID:207 +xref: galen:Ilium +xref: http://linkedlifedata.com/resource/umls/id/C0020889 +xref: http://www.snomedbrowser.com/Codes/Details/182029005 +xref: Ilium:(bone) +xref: MA:0001336 +xref: MESH:A02.835.232.611.434 +xref: NCIT:C32765 +xref: OpenCyc:Mx4rvhwFJ5wpEbGdrcN5Y29ycA +xref: UMLS:C0020889 {source="ncithesaurus:Ilium"} +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0007830 ! pelvic girdle bone/zone +is_a: UBERON:0015054 ! iliac endochondral element +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0015054 ! iliac endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: contributes_to_morphology_of UBERON:0007830 ! pelvic girdle bone/zone +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +relationship: develops_from UBERON:0010714 {source="cjm"} ! iliac cartilage element +relationship: dubious_for_taxon NCBITaxon:8570 {source="Wikipedia"} +relationship: in_lateral_side_of UBERON:0007832 ! pelvic girdle skeleton +relationship: part_of UBERON:0001272 {source="FMA"} ! innominate bone + +[Term] +id: UBERON:0001274 +name: ischium +def: "Endochondral bone that is paired, forming the posterior part of the pelvis, articulating with the pubis and ilium." [http://en.wikipedia.org/wiki/Ischium, VSAO:0005006, VSAO:NI] +subset: pheno_slim +subset: uberon_slim +synonym: "ischial bone" EXACT [EMAPA:18727] +synonym: "ischium bone" EXACT [] +synonym: "os ischii" RELATED [AAO:0000860] +synonym: "os ischii" RELATED LATIN [http://en.wikipedia.org/wiki/Ischium] +xref: AAO:0000860 +xref: EMAPA:18727 +xref: FMA:16592 +xref: GAID:208 +xref: galen:Ischium +xref: http://en.wikipedia.org/wiki/Ischium +xref: http://linkedlifedata.com/resource/umls/id/C0022122 +xref: http://www.snomedbrowser.com/Codes/Details/182025004 +xref: MA:0001337 +xref: MESH:A02.835.232.611.548 +xref: NCIT:C32884 +xref: OpenCyc:Mx4rvlzMKpwpEbGdrcN5Y29ycA +xref: UMLS:C0022122 {source="ncithesaurus:Ischium"} +xref: VSAO:0005006 +is_a: UBERON:0002513 {source="VSAO"} ! endochondral bone +is_a: UBERON:0007830 {source="MA"} ! pelvic girdle bone/zone +is_a: UBERON:0008202 {source="MA"} ! bone of hip region +is_a: UBERON:0015056 ! ischial endochondral element +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0015056 ! ischial endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: contributes_to_morphology_of UBERON:0007830 ! pelvic girdle bone/zone +relationship: develops_from UBERON:0006254 {source="cjm"} ! ischial cartilage element +relationship: in_lateral_side_of UBERON:0007832 ! pelvic girdle skeleton +relationship: part_of UBERON:0001272 ! innominate bone + +[Term] +id: UBERON:0001275 +name: pubis +def: "A paired endochondral bone making up the anteroventral region of the tripartite pelvic girdle forming part of the ventral edge of the acetabulum. The origin site of many proximal hindlimb muscles. [PHENOSCAPE:ad]." [https://github.com/obophenotype/uberon/issues/68, PHENOSCAPE:ad] +subset: pheno_slim +subset: uberon_slim +synonym: "os pubis" RELATED [http://en.wikipedia.org/wiki/Pubis_(bone)] +synonym: "pubic bone" RELATED [http://en.wikipedia.org/wiki/Pubis_(bone)] +synonym: "pubis bone" RELATED [http://en.wikipedia.org/wiki/Pubis_(bone)] +xref: AAO:0000861 +xref: EMAPA:18728 +xref: FMA:16595 +xref: galen:Pubis +xref: http://linkedlifedata.com/resource/umls/id/C0034014 +xref: http://www.snomedbrowser.com/Codes/Details/182035005 +xref: MA:0001338 +xref: MESH:A02.835.232.611.781 +xref: NCIT:C33423 +xref: Pubis:(bone) +xref: UMLS:C0034014 {source="ncithesaurus:Pubic_Bone"} +is_a: UBERON:0002513 {source="VSAO"} ! endochondral bone +is_a: UBERON:0007830 {source="MA"} ! pelvic girdle bone/zone +is_a: UBERON:0008202 {source="MA"} ! bone of hip region +is_a: UBERON:0015055 ! pubic endochondral element +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0015055 ! pubic endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: contributes_to_morphology_of UBERON:0007830 ! pelvic girdle bone/zone +property_value: dc-contributor https://github.com/alex-dececchi +property_value: dc-contributor https://github.com/cmungall +relationship: develops_from UBERON:0010718 ! pubic cartilage element +relationship: in_lateral_side_of UBERON:0007832 ! pelvic girdle skeleton +relationship: part_of UBERON:0001272 {source="FMA"} ! innominate bone + +[Term] +id: UBERON:0001276 +name: epithelium of stomach +def: "The epithelial layer of the stomach ." [MP:0000471] +subset: pheno_slim +synonym: "epithelial tissue of stomach" EXACT [OBOL:automatic] +synonym: "epithelial tissue of ventriculus" EXACT [OBOL:automatic] +synonym: "epithelium of ventriculus" EXACT [OBOL:automatic] +synonym: "gastric epithelium" RELATED [BTO:0000500] +synonym: "stomach epithelial tissue" EXACT [OBOL:automatic] +synonym: "stomach epithelium" EXACT [OBOL:automatic] +synonym: "ventriculus epithelial tissue" EXACT [OBOL:automatic] +synonym: "ventriculus epithelium" EXACT [OBOL:automatic] +xref: BTO:0000500 +xref: CALOHA:TS-2068 +xref: EHDAA2:0001918 +xref: EMAPA:17023 +xref: FMA:17091 +xref: http://www.snomedbrowser.com/Codes/Details/64977002 +xref: MA:0001610 +xref: VHOG:0001433 +is_a: UBERON:0000485 ! simple columnar epithelium +is_a: UBERON:0003350 ! epithelium of mucosa +is_a: UBERON:0004808 ! gastrointestinal system epithelium +is_a: UBERON:0015833 ! foregut epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000945 ! stomach +relationship: contributes_to_morphology_of UBERON:0001199 ! mucosa of stomach +relationship: part_of UBERON:0001199 ! mucosa of stomach + +[Term] +id: UBERON:0001277 +name: intestinal epithelium +def: "Epithelial layer that lines the intestine." [UBERON:cjm] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "bowel epithelial tissue" EXACT [OBOL:automatic] +synonym: "bowel epithelium" EXACT [OBOL:automatic] +synonym: "epithelial tissue of bowel" EXACT [OBOL:automatic] +synonym: "epithelial tissue of intestine" EXACT [OBOL:automatic] +synonym: "epithelium of bowel" EXACT [OBOL:automatic] +synonym: "epithelium of intestine" EXACT [OBOL:automatic] +synonym: "intestine epithelial tissue" EXACT [OBOL:automatic] +synonym: "intestine epithelium" RELATED [] +synonym: "villous epithelium" NARROW [ZFA:0005124] +xref: BTO:0000781 +xref: EMAPA:32873 +xref: FMA:17229 +xref: http://linkedlifedata.com/resource/umls/id/C0226890 +xref: http://www.snomedbrowser.com/Codes/Details/266135004 +xref: Intestinal:epithelium +xref: MA:0001536 +xref: NCIT:C49240 +xref: TAO:0005124 +xref: UMLS:C0226890 {source="ncithesaurus:Intestinal_Epithelium"} +xref: ZFA:0005124 +is_a: UBERON:0000485 ! simple columnar epithelium +is_a: UBERON:0003350 ! epithelium of mucosa +is_a: UBERON:0003929 ! digestive tract epithelium +is_a: UBERON:0004808 ! gastrointestinal system epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000160 ! intestine +relationship: contributes_to_morphology_of UBERON:0000160 ! intestine +relationship: part_of UBERON:0001242 ! intestinal mucosa + +[Term] +id: UBERON:0001278 +name: epithelium of large intestine +def: "An epithelium that is part of a large intestine [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of large intestine" EXACT [OBOL:automatic] +synonym: "large intestinal epithelium" EXACT [] +synonym: "large intestine epithelial tissue" EXACT [OBOL:automatic] +synonym: "large intestine epithelium" EXACT [] +xref: CALOHA:TS-2105 +xref: EMAPA:35466 +xref: FMA:17301 +xref: MA:0001545 +is_a: UBERON:0001277 ! intestinal epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000059 ! large intestine +relationship: part_of UBERON:0001207 ! mucosa of large intestine + +[Term] +id: UBERON:0001279 +name: portal triad +def: "A multi-organ-part structure that consists of three vessels of the portal lobule including the bile duct, a terminal branch of the hepatic artery and portal vein, and may also include a lymphatic vessel" [http://orcid.org/0000-0002-6601-2165, ISBN:0-683-40008-8, MGI:csmith, MP:0008993] +subset: pheno_slim +subset: uberon_slim +synonym: "trias hepatica" EXACT [] +synonym: "trias hepatica" RELATED LATIN [http://en.wikipedia.org/wiki/Portal_triad] +xref: FMA:17523 +xref: http://linkedlifedata.com/resource/umls/id/C0227514 +xref: http://www.snomedbrowser.com/Codes/Details/362192000 +xref: MA:0002499 +xref: NCIT:C33342 +xref: Portal:triad +xref: UMLS:C0227514 {source="ncithesaurus:Portal_Triad"} +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0034921 ! multi organ part structure +relationship: contributes_to_morphology_of UBERON:0001171 ! portal lobule +relationship: has_part UBERON:0001193 ! hepatic artery +relationship: has_part UBERON:0002017 ! portal vein +relationship: has_part UBERON:0003704 ! intrahepatic bile duct +relationship: part_of UBERON:0001172 ! hepatic acinus + +[Term] +id: UBERON:0001280 +name: liver parenchyma +alt_id: UBERON:0003223 +def: "The functional units of the liver including the lobules." [MP:0008986] +subset: pheno_slim +synonym: "hepatic parenchyma" EXACT [FMA:17540] +synonym: "hepatic parenchyme" RELATED [VHOG:0000539] +synonym: "liver parenchyme" EXACT [XAO:0000454] +synonym: "parenchyma of liver" EXACT [FMA:17540] +xref: AAO:0010405 +xref: EHDAA2:0001004 +xref: EHDAA:2201 +xref: EMAPA:17203 +xref: FMA:17540 +xref: http://linkedlifedata.com/resource/umls/id/C0736268 +xref: http://www.snomedbrowser.com/Codes/Details/363535004 +xref: MA:0000366 +xref: NCIT:C32735 +xref: VHOG:0000539 +xref: XAO:0000454 +is_a: UBERON:0000353 ! parenchyma +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000353 ! parenchyma +intersection_of: part_of UBERON:0002107 ! liver +relationship: contributes_to_morphology_of UBERON:0002107 ! liver +relationship: develops_from UBERON:0008835 {source="XAO"} ! hepatic diverticulum +relationship: part_of UBERON:0002107 ! liver + +[Term] +id: UBERON:0001281 +name: hepatic sinusoid +alt_id: UBERON:0003275 +def: "Wide thin-walled blood vessels in the liver. In mammals they have neither veinous or arterial markers." [http://en.wikipedia.org/wiki/Hepatic_sinusoid, ZFIN:curator] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "hepatic sinusoids" RELATED [] +synonym: "liver hepatic sinusoids" EXACT [EHDAA2:0000999] +synonym: "liver sinusoid" EXACT [] +synonym: "liver sinusoidal blood vessel" EXACT [OBOL:automatic] +synonym: "sinusoid of liver" EXACT [OBOL:automatic] +synonym: "sinusoidal blood vessel of liver" EXACT [OBOL:automatic] +synonym: "vas capillare sinusoideum" EXACT [] +synonym: "vas sinusoideum" EXACT LATIN [http://en.wikipedia.org/wiki/Hepatic_sinusoid] +xref: EHDAA2:0000999 +xref: EMAPA:17365 +xref: FMA:17543 +xref: Hepatic:sinusoid +xref: http://linkedlifedata.com/resource/umls/id/C0227523 +xref: http://www.snomedbrowser.com/Codes/Details/67435004 +xref: MA:0000367 +xref: NCIT:C32733 +xref: TAO:0005091 +xref: UMLS:C0227523 {source="ncithesaurus:Hepatic_Sinusoid"} +xref: VHOG:0000708 +xref: ZFA:0005091 +is_a: UBERON:0003909 ! sinusoid +is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0015796 ! liver blood vessel +intersection_of: UBERON:0003909 ! sinusoid +intersection_of: part_of UBERON:0002107 ! liver +relationship: contributes_to_morphology_of UBERON:0004647 ! liver lobule +relationship: develops_in UBERON:0001113 ! lobe of liver +relationship: part_of UBERON:0004647 ! liver lobule +relationship: part_of UBERON:0006877 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! vasculature of liver + +[Term] +id: UBERON:0001282 +name: intralobular bile duct +def: "the tubules located between the bile canaliculi and interlobular bile ducts near the outer edge of a classic liver lobule" [MGI:csmith, MP:0009499] +subset: pheno_slim +subset: uberon_slim +synonym: "canal of Hering" RELATED [] +synonym: "canal of Herring" EXACT [FMA:17545] +synonym: "canals of Hering" RELATED PLURAL [http://en.wikipedia.org/wiki/Canals_of_Hering] +synonym: "cholangiole" EXACT [FMA:17545] +synonym: "duct of Herring" RELATED [http://en.wikipedia.org/wiki/Canals_of_Hering] +synonym: "ductus interlobularis bilifer" EXACT LATIN [FMA:17545, FMA:TA] +synonym: "intrahepatic bile ductule" RELATED [http://en.wikipedia.org/wiki/Canals_of_Hering] +xref: FMA:17545 +xref: http://en.wikipedia.org/wiki/Canals_of_Hering +xref: http://linkedlifedata.com/resource/umls/id/C0227517 +xref: http://www.snomedbrowser.com/Codes/Details/227002 +xref: http://www.snomedbrowser.com/Codes/Details/269922006 +xref: MA:0002669 +xref: NCIT:C32255 +xref: UMLS:C0227517 {source="ncithesaurus:Canal_of_Hering"} +is_a: UBERON:0003704 {source="FMA"} ! intrahepatic bile duct +is_a: UBERON:0014716 ! interlobular duct +relationship: contributes_to_morphology_of UBERON:0004647 ! liver lobule +relationship: part_of UBERON:0001172 {source="FMA"} ! hepatic acinus +relationship: part_of UBERON:0004647 {source="FMA"} ! liver lobule + +[Term] +id: UBERON:0001283 +name: bile canaliculus +def: "An intercellular channel that takes up bile from hepatocytes, transporting it to the bile ducts." [MP:0008991] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "bile canaliculi" RELATED PLURAL [http://en.wikipedia.org/wiki/Bile_canaliculus] +synonym: "bile capillary" RELATED [BTO:0002841] +synonym: "biliary canaliculus" RELATED [BTO:0002841] +xref: Bile:canaliculus +xref: BTO:0002841 +xref: EMAPA:36534 +xref: FMA:17547 +xref: http://linkedlifedata.com/resource/umls/id/C0005393 +xref: http://www.snomedbrowser.com/Codes/Details/270023005 +xref: MA:0002495 +xref: MESH:D001648 +xref: NCIT:C32202 +xref: TAO:0005163 +xref: UMLS:C0005393 {source="ncithesaurus:Bile_Canaliculus"} +xref: ZFA:0005163 +is_a: UBERON:0000464 {source="FMA", source="ZFA"} ! anatomical space +relationship: contributes_to_morphology_of UBERON:0004647 ! liver lobule +relationship: part_of UBERON:0002394 {source="BTO"} ! bile duct +relationship: part_of UBERON:0004647 {source="FMA"} ! liver lobule +relationship: part_of UBERON:0005452 {source="FMA"} ! hepatic cord + +[Term] +id: UBERON:0001284 +name: renal column +def: "A column of tissue that is histologically identical to tissue found in the renal cortex, but which is located in the medulla between the renal pyramids." [http://anatomy.uams.edu/anatomyhtml/kidney.html] +subset: uberon_slim +synonym: "Bertin's column" RELATED [FMA:17633] +synonym: "column of Bertin" RELATED [FMA:17633] +synonym: "column of Bertini" EXACT [] +synonym: "columna Bertini" EXACT LATIN [FMA:17633, FMA:TA] +synonym: "columnae renales" RELATED LATIN [http://en.wikipedia.org/wiki/Renal_column] +synonym: "cortical column" BROAD [ncithesaurus:Cortical_Column] +synonym: "kidney column" EXACT [MA:0001651] +synonym: "renal column of Bertini" EXACT [] +synonym: "renal cortical column" EXACT [] +xref: EMAPA:37487 {source="MA:th"} +xref: FMA:17633 +xref: http://linkedlifedata.com/resource/umls/id/C0736346 +xref: MA:0001651 +xref: NCIT:C32387 +xref: Renal:column +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0002189 {source="FMA", source="MA"} ! outer cortex of kidney + +[Term] +id: UBERON:0001285 +name: nephron +def: "The basic functional unit of the kidney. its chief function is to regulate the concentration of water and soluble substances like sodium salts by filtering the blood, reabsorbing what is needed and excreting the rest as urine. A nephron eliminates wastes from the body, regulates blood volume and blood pressure, controls levels of electrolytes and metabolites, and regulates blood pH. Its functions are vital to life and are regulated by the endocrine system by hormones such as antidiuretic hormone, aldosterone, and parathyroid hormone.[WP]" [http://en.wikipedia.org/wiki/Nephron, http://www.ncbi.nlm.nih.gov/pubmed/9268568] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "mature nephron" NARROW [EMAPA:28491] +synonym: "nephroneum" RELATED LATIN [http://en.wikipedia.org/wiki/Nephron] +synonym: "tubulus renalis" RELATED LATIN [http://en.wikipedia.org/wiki/Nephron] +xref: BTO:0000924 +xref: CALOHA:TS-1312 +xref: EMAPA:28491 +xref: EMAPA:35592 +xref: EV:0100384 +xref: FMA:17640 +xref: GAID:428 +xref: http://en.wikipedia.org/wiki/Nephron +xref: http://linkedlifedata.com/resource/umls/id/C0027713 +xref: http://www.snomedbrowser.com/Codes/Details/361337001 +xref: MA:0000375 +xref: MESH:D009399 +xref: NCIT:C13048 +xref: TAO:0002153 +xref: UMLS:C0027713 {source="ncithesaurus:Nephron"} +xref: ZFA:0005282 +is_a: UBERON:0000064 ! organ part +relationship: contributes_to_morphology_of UBERON:0002113 ! kidney +relationship: develops_from UBERON:0010532 ! primitive nephron +relationship: immediate_transformation_of UBERON:0010532 {source="Bgee:AN"} ! primitive nephron +relationship: part_of UBERON:0007684 {source="FMA"} ! uriniferous tubule + +[Term] +id: UBERON:0001286 +name: Bowman's space +def: "A narrow chalice-shaped cavity between the glomerular and capsular epithelium of the glomerular capsule of the kidney[TFD]. Between the visceral and parietal layers, into which the filtrate enters after passing through the podocytes' filtration slits[WP]. luminal region between the glomerular capsule visceral and parietal layers, into which filtrate enters after passing through the filtration barrier from the glomerular capillaries[MP]" [http://en.wikipedia.org/wiki/Bowman's_space, http://medical-dictionary.thefreedictionary.com/bowman's+space, MP:0011499] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "Bowman's space" EXACT [] +synonym: "Bowmanb%s space" RELATED [TAO:0005312] +synonym: "capsular space" EXACT [http://medical-dictionary.thefreedictionary.com/bowman's+space] +synonym: "glomerular capsule space" EXACT [MP:0011499] +synonym: "glomerular urinary space" EXACT [MP:0011499] +synonym: "inter-glomerular space" EXACT [ZFA:0005283] +synonym: "inter-glomerular space" EXACT [ZFA:0005312] +synonym: "pronephric capsular space" EXACT [ZFA:0005312] +synonym: "renal capsular space" EXACT [ZFA:0005283] +synonym: "urinary space" EXACT [] +synonym: "urinary space of renal corpuscle" EXACT [EMAPA:28263] +xref: Bowman's:space +xref: EMAPA:27985 +xref: EMAPA:28263 +xref: FMA:17676 +xref: http://linkedlifedata.com/resource/umls/id/C0227643 +xref: http://www.snomedbrowser.com/Codes/Details/244284006 +xref: MA:0001664 +xref: NCIT:C33840 +xref: TAO:0005283 +xref: TAO:0005312 +xref: UMLS:C0227643 {source="ncithesaurus:Urinary_Space"} +xref: ZFA:0005283 +xref: ZFA:0005312 +is_a: UBERON:0000464 ! anatomical space +relationship: contributes_to_morphology_of UBERON:0001230 ! glomerular capsule +relationship: part_of UBERON:0001230 ! glomerular capsule + +[Term] +id: UBERON:0001287 +name: proximal convoluted tubule +def: "The proximal convoluted tubule is the most proximal portion of the proximal tubule and extends from the glomerular capsule to the proximal straight tubule." [GO:0072019] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "1st convoluted tubule" RELATED [] +synonym: "first convoluted tubule" RELATED [] +synonym: "kidney proximal convoluted tubule" RELATED [EMAPA:28287] +synonym: "PCT" RELATED [] +synonym: "proximal convoluted renal tubule" EXACT [] +synonym: "renal proximal convoluted tubule" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "tubulus contortus proximalis" EXACT [] +synonym: "tubulus contortus proximalis" RELATED LATIN [http://en.wikipedia.org/wiki/Proximal_convoluted_tubule] +synonym: "tubulus convolutus proximalis" RELATED LATIN [] +xref: CALOHA:TS-2198 +xref: EMAPA:28287 +xref: EV:0100388 +xref: FMA:17693 +xref: http://en.wikipedia.org/wiki/Proximal_convoluted_tubule +xref: http://linkedlifedata.com/resource/umls/id/C1514580 +xref: http://www.snomedbrowser.com/Codes/Details/362220008 +xref: MA:0001669 +xref: NCIT:C33417 +xref: TAO:0005290 +xref: UMLS:C1514580 {source="ncithesaurus:Proximal_Convoluted_Tube"} +xref: ZFA:0005290 +is_a: UBERON:0006534 {source="MA"} ! renal convoluted tubule +is_a: UBERON:0006853 ! renal cortex tubule +is_a: UBERON:0012275 ! meso-epithelium +relationship: continuous_with UBERON:0001230 {source="GO"} ! glomerular capsule +relationship: continuous_with UBERON:0001290 ! proximal straight tubule +relationship: contributes_to_morphology_of UBERON:0001231 ! nephron tubule +relationship: develops_from UBERON:0003220 {source="Wikipedia"} ! metanephric mesenchyme +relationship: part_of UBERON:0004134 {notes="MA uses subclass", source="GOC:mtg_kidney_jan10"} ! proximal tubule + +[Term] +id: UBERON:0001288 +name: loop of Henle +def: "the section of the renal tubule in the kidney medulla with a hairpin bend; consists of a descending limb and an ascending limb, and is situated between the proximal convoluted tubule to the distal convoluted tubule; it functions to reabsorb water and ions from the urine" [MGI:csmith, MP:0004755] +subset: pheno_slim +subset: uberon_slim +synonym: "ansa nephroni" EXACT LATIN [http://en.wikipedia.org/wiki/Loop_of_Henle] +synonym: "Henle loop" EXACT [] +synonym: "Henle's loop" EXACT [] +xref: BTO:0004608 +xref: EMAPA:19280 +xref: EV:0100390 +xref: FMA:17698 +xref: GAID:437 +xref: http://en.wikipedia.org/wiki/Loop_of_Henle +xref: http://linkedlifedata.com/resource/umls/id/C0023986 +xref: http://www.snomedbrowser.com/Codes/Details/361335009 +xref: MA:0001675 +xref: MESH:D008138 +xref: NCIT:C33006 +xref: UMLS:C0023986 {source="ncithesaurus:Loop_of_Henle"} +xref: VHOG:0001270 +is_a: UBERON:0007685 ! region of nephron tubule +intersection_of: UBERON:0007685 ! region of nephron tubule +intersection_of: continuous_with UBERON:0001287 ! proximal convoluted tubule +intersection_of: continuous_with UBERON:0001292 ! distal convoluted tubule +relationship: continuous_with UBERON:0001287 ! proximal convoluted tubule +relationship: continuous_with UBERON:0001292 ! distal convoluted tubule +relationship: contributes_to_morphology_of UBERON:0001231 ! nephron tubule +relationship: dubious_for_taxon NCBITaxon:8353 +relationship: present_in_taxon NCBITaxon:8782 + +[Term] +id: UBERON:0001289 +name: descending limb of loop of Henle +def: "the portion of the renal tubule that constitutes the proximal part of the loop of Henle, has low permeability to ions and urea, and is highly permeable to water; it consists of an initial short thick segment lined by low simple cuboidal epithelium and a long thin segment lined by simple squamous epithelium; however, this distinction is not as important physiologically as in the ascending limb, so often the two are treated as one structure" [MGI:anna, MP:0011341] +subset: pheno_slim +subset: uberon_slim +synonym: "descending limb" BROAD [] +synonym: "descending limb of Henle's loop" EXACT [] +synonym: "loop of Henle descending limb" EXACT [] +xref: EMAPA:35511 +xref: FMA:17705 +xref: http://en.wikipedia.org/wiki/Descending_limb_of_loop_of_henle +xref: http://linkedlifedata.com/resource/umls/id/C0227657 +xref: http://www.snomedbrowser.com/Codes/Details/245350001 +xref: MA:0001679 +xref: NCIT:C32456 +xref: UMLS:C0227657 {source="ncithesaurus:Descending_Limb_of_the_Henle_s_Loop"} +is_a: UBERON:0007685 {source="FMA"} ! region of nephron tubule +relationship: contributes_to_morphology_of UBERON:0001288 ! loop of Henle +relationship: part_of UBERON:0001288 {source="FMA"} ! loop of Henle + +[Term] +id: UBERON:0001290 +name: proximal straight tubule +alt_id: UBERON:0005166 +def: "The proximal straight tubule is the part of the descending limb that extends from the proximal convoluted tubule to the descending thin tubule." [GO:0072020] +subset: uberon_slim +subset: vertebrate_core +synonym: "pars recta" RELATED [] +synonym: "pars recta tubuli renalis" RELATED [BTO:0000055] +synonym: "proximal tubule segment 3" RELATED [MA:0002614] +synonym: "S3" EXACT [GO:0072020] +synonym: "segment 3 of proximal tubule" RELATED [EMAPA:29661] +synonym: "thick descending limb of proximal tubule" EXACT [] +synonym: "tubulus rectus proximalis" EXACT [] +xref: BTO:0000055 +xref: EMAPA:29661 +xref: EMAPA:29669 +xref: FMA:17716 +xref: http://en.wikipedia.org/wiki/Proximal_straight_tubule +xref: MA:0002614 +xref: TAO:0005291 +xref: ZFA:0005291 +is_a: UBERON:0006853 ! renal cortex tubule +is_a: UBERON:0009035 {source="MA"} ! renal straight tubule +relationship: continuous_with UBERON:0001287 ! proximal convoluted tubule +relationship: continuous_with UBERON:0005096 ! descending thin limb +relationship: part_of UBERON:0001289 {source="MA"} ! descending limb of loop of Henle +relationship: part_of UBERON:0004134 {notes="MA uses subclass", source="GOC:mtg_kidney_jan10"} ! proximal tubule +relationship: part_of UBERON:0006542 {source="MA"} ! outer medulla outer stripe loop of Henle + +[Term] +id: UBERON:0001291 +name: thick ascending limb of loop of Henle +def: "the distal sub-portion of the ascending loop of Henle which is lined by simple cuboidal epithelium and enters the renal cortex to empty a hypotonic filtrate into the distal convoluted tubule" [MGI:anna, MP:0011344] +subset: pheno_slim +subset: uberon_slim +synonym: "ascending thick limb" EXACT [] +synonym: "distal straight tubule" EXACT [MA:0001677] +synonym: "loop of Henle ascending limb thick segment" EXACT [MA:0001677] +synonym: "straight portion of distal convoluted renal tubule" EXACT [] +synonym: "straight portion of distal convoluted tubule" EXACT [FMA:17722] +synonym: "thick ascending limb" EXACT [] +synonym: "thick ascending limb of distal tubule" EXACT [FMA:17722] +synonym: "thick ascending limb of Henle's loop" EXACT [] +synonym: "tubulus rectus distalis" EXACT [FMA:17722] +synonym: "tubulus rectus distalis" RELATED LATIN [http://en.wikipedia.org/wiki/Thick_ascending_limb_of_loop_of_Henle] +xref: EMAPA:28396 +xref: EMAPA:29671 +xref: EMAPA:35512 +xref: FMA:17722 +xref: http://en.wikipedia.org/wiki/Thick_ascending_limb_of_loop_of_Henle +xref: http://www.snomedbrowser.com/Codes/Details/244953001 +xref: MA:0001677 +is_a: UBERON:0009035 {source="MA"} ! renal straight tubule +relationship: contributes_to_morphology_of UBERON:0005164 ! ascending limb of loop of Henle +relationship: part_of UBERON:0005164 ! ascending limb of loop of Henle + +[Term] +id: UBERON:0001292 +name: distal convoluted tubule +def: "The first segment of the nephron lying just downstream from the loop of Henle, immediately after the macula densa." [GO:0072025] +subset: pheno_slim +subset: uberon_slim +synonym: "distal convoluted renal tubule" EXACT [] +synonym: "second convoluted tubule" RELATED [] +synonym: "tubulus contortus distalis" EXACT [] +synonym: "tubulus contortus distalis" RELATED LATIN [http://en.wikipedia.org/wiki/Distal_convoluted_tubule] +synonym: "tubulus convolutus distalis" RELATED LATIN [] +xref: EMAPA:28393 +xref: EV:0100389 +xref: FMA:17721 +xref: http://en.wikipedia.org/wiki/Distal_convoluted_tubule +xref: http://linkedlifedata.com/resource/umls/id/C0022676 +xref: http://www.snomedbrowser.com/Codes/Details/361336005 +xref: MA:0001666 +xref: NCIT:C32469 +xref: UMLS:C0022676 {source="ncithesaurus:Distal_Convoluted_Tubule"} +is_a: UBERON:0006534 {source="MA"} ! renal convoluted tubule +is_a: UBERON:0006853 ! renal cortex tubule +is_a: UBERON:0012275 ! meso-epithelium +relationship: contributes_to_morphology_of UBERON:0001231 ! nephron tubule +relationship: develops_from UBERON:0003220 ! metanephric mesenchyme +relationship: part_of UBERON:0004135 {source="EMAPA", source="GO", source="MA-modified-from-isa"} ! distal tubule + +[Term] +id: UBERON:0001293 +name: outer medulla of kidney +def: "The renal outer medulla is the region of the kidney that lies between the renal cortex and the renal inner medulla[GO]." [GOC:mtg_kidney_jan10, https://doi.org/10.1371/journal.pone.0099864] +subset: pheno_slim +synonym: "kidney outer medulla" RELATED [BTO:0001746] +synonym: "outer renal medulla" EXACT [] +synonym: "outer zone of medulla of kidney" EXACT [] +synonym: "outer zone of renal medulla" EXACT [] +synonym: "renal outer medulla" EXACT [BTO:0001746] +synonym: "set of outer region of renal pyramids" RELATED [FMA:17733] +synonym: "zona externa (medullaris renalis)" EXACT LATIN [FMA:17733, FMA:TA] +synonym: "zona externa medullae renalis" EXACT LATIN [FMA:17733, FMA:TA] +xref: BTO:0001746 +xref: CALOHA:TS-0508 +xref: EMAPA:28310 +xref: FMA:17733 +xref: MA:0001653 +is_a: UBERON:0000064 ! organ part +relationship: contributes_to_morphology_of UBERON:0000362 ! renal medulla +relationship: part_of UBERON:0000362 ! renal medulla + +[Term] +id: UBERON:0001294 +name: inner medulla of kidney +def: "Innermost region of the mammalian kidney." [GO:0072053] +subset: pheno_slim +synonym: "inner renal medulla" EXACT [] +synonym: "inner zone of medulla of kidney" EXACT [] +synonym: "inner zone of renal medulla" EXACT [] +synonym: "kidney inner medulla" RELATED [BTO:0001745] +synonym: "renal inner medulla" EXACT [BTO:0001745] +synonym: "set of inner region of renal pyramids" EXACT [] +synonym: "zona interna (medullaris renalis)" EXACT LATIN [FMA:17734, FMA:TA] +synonym: "zona interna medullae renalis" EXACT LATIN [FMA:17734, FMA:TA] +xref: BTO:0001745 +xref: CALOHA:TS-0506 +xref: EMAPA:28349 +xref: FMA:17734 +xref: MA:0001652 +is_a: UBERON:0000064 ! organ part +relationship: contributes_to_morphology_of UBERON:0000362 ! renal medulla +relationship: part_of UBERON:0000362 ! renal medulla + +[Term] +id: UBERON:0001295 +name: endometrium +def: "the glandular mucous membrane lining of the uterine cavity that is hormonally responsive during the estrous/menstrual cycle and during pregnancy" [MESH:A05.360.319.679.490, MGI:smb, MP:0004896] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "tunica mucosa (endometrium)" EXACT [FMA:17742] +synonym: "tunica mucosa uteri" EXACT LATIN [http://en.wikipedia.org/wiki/Endometrium] +synonym: "uterine endometrium" EXACT [BTO:0001422] +synonym: "uterine mucosa" RELATED [] +synonym: "uterine mucous membrane" RELATED [BTO:0001422] +xref: BTO:0001422 +xref: CALOHA:TS-0276 +xref: EFO:0000980 +xref: EMAPA:29917 +xref: EV:0100115 +xref: FMA:17742 +xref: GAID:377 +xref: http://en.wikipedia.org/wiki/Endometrium +xref: http://linkedlifedata.com/resource/umls/id/C0014180 +xref: http://www.snomedbrowser.com/Codes/Details/278867007 +xref: MA:0000390 +xref: MAT:0000319 +xref: MESH:D004717 +xref: MIAA:0000319 +xref: NCIT:C12313 +xref: UMLS:C0014180 {source="ncithesaurus:Endometrium"} +xref: VHOG:0001285 +is_a: UBERON:0019042 ! reproductive system mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0000995 ! uterus +relationship: contributes_to_morphology_of UBERON:0000995 ! uterus +relationship: part_of UBERON:0000459 {source="FMA"} ! uterine wall + +[Term] +id: UBERON:0001296 +name: myometrium +def: "the smooth muscle coat of the uterus, which forms the main mass of the organ and surrounds and supports the endometrium" [MESH:A02.633.570.500, MGI:brs, MP:0008256] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "tunica muscularis" RELATED LATIN [http://en.wikipedia.org/wiki/Myometrium] +synonym: "tunica muscularis (myometrium)" EXACT [] +synonym: "uterine myometrium" RELATED [BTO:0000907] +synonym: "uterine smooth muscle" RELATED [] +xref: BTO:0000907 +xref: CALOHA:TS-0652 +xref: EFO:0001970 +xref: EMAPA:29923 +xref: EV:0100116 +xref: FMA:17743 +xref: GAID:171 +xref: http://en.wikipedia.org/wiki/Myometrium +xref: http://linkedlifedata.com/resource/umls/id/C0027088 +xref: http://www.snomedbrowser.com/Codes/Details/279879004 +xref: MA:0000391 +xref: MESH:D009215 +xref: NCIT:C12314 +xref: UMLS:C0027088 {source="ncithesaurus:Myometrium"} +xref: VHOG:0001281 +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0034933 ! layer of smooth muscle tissue +relationship: contributes_to_morphology_of UBERON:0000995 ! uterus +relationship: part_of UBERON:0000459 {source="FMA"} ! uterine wall +relationship: surrounded_by UBERON:0001297 ! serosa of uterus +relationship: surrounds UBERON:0001295 ! endometrium + +[Term] +id: UBERON:0001297 +name: serosa of uterus +def: "Outer serosa layer of the uterus." [http://en.wikipedia.org/wiki/Perimetrium] +synonym: "perimetrium" EXACT [http://en.wikipedia.org/wiki/Perimetrium] +synonym: "serous coat of uterus" EXACT [http://en.wikipedia.org/wiki/Perimetrium] +synonym: "serous membrane of uterus" EXACT [OBOL:automatic] +synonym: "tunica serosa (perimetrium)" EXACT [] +synonym: "tunica serosa uteri" EXACT LATIN [FMA:17744, FMA:TA] +synonym: "uterine serosa" EXACT [] +synonym: "uterus serosa" EXACT [] +synonym: "uterus serous membrane" EXACT [OBOL:automatic] +synonym: "visceral peritoneum of uterus" EXACT [] +xref: EMAPA:37792 {source="MA:th"} +xref: FMA:17744 +xref: http://en.wikipedia.org/wiki/Perimetrium +xref: http://linkedlifedata.com/resource/umls/id/C0227824 +xref: http://www.snomedbrowser.com/Codes/Details/253705006 +xref: MA:0001729 +xref: NCIT:C33298 +xref: UMLS:C0227824 {source="ncithesaurus:Perimetrium"} +is_a: UBERON:0000042 ! serous membrane +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0000042 ! serous membrane +intersection_of: part_of UBERON:0000995 ! uterus +relationship: part_of UBERON:0000459 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! uterine wall + +[Term] +id: UBERON:0001298 +name: psoas major muscle +def: "The psoas major is a long fusiform muscle placed on the side of the lumbar region of the vertebral column and brim of the lesser pelvis. It joins the iliacus muscle to form the iliopsoas. In less than 50 per cent of subjects the psoas major is accompanied by the psoas minor. [WP,unvetted]." [http://en.wikipedia.org/wiki/Psoas_major_muscle] +subset: uberon_slim +synonym: "m. psoas major" RELATED LATIN [http://en.wikipedia.org/wiki/Psoas_major_muscle] +synonym: "psoas major" EXACT [MA:0002358] +xref: BTO:0001877 +xref: EMAPA:18169 +xref: FMA:18060 +xref: http://en.wikipedia.org/wiki/Psoas_major_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224419 +xref: http://www.snomedbrowser.com/Codes/Details/244952006 +xref: MA:0002358 +xref: NCIT:C33420 +xref: OpenCyc:Mx4rwU5ZfZwpEbGdrcN5Y29ycA +xref: UMLS:C0224419 {source="ncithesaurus:Psoas_Major"} +is_a: UBERON:0008450 {source="MA"} ! psoas muscle +relationship: has_muscle_insertion UBERON:0002504 {notes="in the lesser trochanter of the femur", source="dbpedia"} ! lesser trochanter +relationship: has_muscle_origin UBERON:0001077 {notes="Transverse processes of T12-L5 and the lateral aspects of the discs between them", source="dbpedia"} ! transverse process of vertebra + +[Term] +id: UBERON:0001299 +name: glans penis +def: "the conic expansion of the corpus spongiosum that forms the head of the penis" [MGI:anna, MP:0009102] +subset: pheno_slim +subset: uberon_slim +synonym: "balanus" RELATED [BTO:0003118] +synonym: "coronal sulcus" RELATED INCONSISTENT [http://en.wikipedia.org/wiki/Glans_penis] +synonym: "glans" BROAD [EV:0100108] +xref: BTO:0003118 +xref: EMAPA:18988 +xref: EV:0100108 +xref: FMA:18247 +xref: GAID:0000012 +xref: Glans:penis +xref: http://linkedlifedata.com/resource/umls/id/C0227948 +xref: http://www.snomedbrowser.com/Codes/Details/263378009 +xref: MA:0002726 +xref: NCIT:C12324 +xref: OpenCyc:Mx4rvdCpE5wpEbGdrcN5Y29ycA +xref: UMLS:C0227948 {source="ncithesaurus:Glans_Penis"} +xref: VHOG:0001475 +is_a: UBERON:0035651 ! glans +intersection_of: UBERON:0035651 ! glans +intersection_of: part_of UBERON:0000989 ! penis +relationship: contributes_to_morphology_of UBERON:0000989 ! penis +relationship: develops_from UBERON:0013239 ! future glans penis +relationship: immediate_transformation_of UBERON:0013239 {source="Bgee:AN"} ! future glans penis +relationship: part_of UBERON:0000989 ! penis +relationship: sexually_homologous_to UBERON:0006653 ! glans clitoris + +[Term] +id: UBERON:0001300 +name: scrotum +def: "the external sac of skin that encloses the testes. It is an extension of the abdomen, and in placentals is located between the penis and anus." [http://en.wikipedia.org/wiki/Scrotum, ISBN:0-683-40008-8, MP:0002669] +subset: pheno_slim +subset: uberon_slim +xref: BTO:0003098 +xref: CALOHA:TS-2341 +xref: EMAPA:19296 +xref: FMA:18252 +xref: GAID:393 +xref: galen:Scrotum +xref: http://en.wikipedia.org/wiki/Scrotum +xref: http://linkedlifedata.com/resource/umls/id/C0036471 +xref: http://www.snomedbrowser.com/Codes/Details/265794003 +xref: MA:0000409 +xref: MESH:D012611 +xref: NCIT:C12785 +xref: OpenCyc:Mx4rwUC_upwpEbGdrcN5Y29ycA +xref: UMLS:C0036471 {source="ncithesaurus:Scrotum"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0034929 ! external soft tissue zone +relationship: develops_from UBERON:0011756 {source="Wikipedia"} ! male genital swelling +relationship: part_of UBERON:0004053 ! external male genitalia + +[Term] +id: UBERON:0001301 +name: epididymis +def: "the elongated structure connected to the posterior surface of the testis that transports, stores, and matures spermatozoa between testis and vas deferens" [MGI:pvb, MP:0002631] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "Nebenhoden@de" RELATED [BTO:0000408] +xref: BTO:0000408 +xref: CALOHA:TS-0285 +xref: EFO:0000982 +xref: EMAPA:19290 +xref: EV:0100103 +xref: FMA:18255 +xref: GAID:397 +xref: galen:Epididymis +xref: http://en.wikipedia.org/wiki/Epididymis +xref: http://linkedlifedata.com/resource/umls/id/C0014533 +xref: http://www.snomedbrowser.com/Codes/Details/181432000 +xref: MA:0000397 +xref: MAT:0000130 +xref: MESH:A05.360.444.849.286 +xref: MIAA:0000130 +xref: NCIT:C12328 +xref: UMLS:C0014533 {source="ncithesaurus:Epididymis"} +xref: VHOG:0001265 +is_a: UBERON:0000025 ! tube +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005904 ! duct of male reproductive system +relationship: channels_from UBERON:0006946 ! efferent duct +relationship: channels_into UBERON:0001000 ! vas deferens +relationship: contributes_to_morphology_of UBERON:0004054 ! internal male genitalia +relationship: develops_from UBERON:0003074 {source="Wikipedia"} ! mesonephric duct +relationship: part_of UBERON:0006947 {source="FMA"} ! male genital duct + +[Term] +id: UBERON:0001302 +name: right uterine tube +def: "A fallopian tube that is part of a right side of organism [Automatically generated definition]." [OBOL:automatic] +synonym: "right fallopian tube" EXACT [] +synonym: "right oviduct" EXACT [] +xref: EMAPA:37369 {source="MA:th"} +xref: FMA:18483 +xref: http://linkedlifedata.com/resource/umls/id/C0227900 +xref: http://www.snomedbrowser.com/Codes/Details/280106006 +xref: MA:0001717 +xref: NCIT:C33475 +xref: UMLS:C0227900 {source="ncithesaurus:Right_Fallopian_Tube"} +is_a: UBERON:0003889 ! fallopian tube +intersection_of: UBERON:0003889 ! fallopian tube +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: in_right_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0001303 +name: left uterine tube +def: "A fallopian tube that is part of a left side of organism [Automatically generated definition]." [OBOL:automatic] +synonym: "left fallopian tube" EXACT [] +synonym: "left oviduct" EXACT [] +xref: EMAPA:37368 {source="MA:th"} +xref: FMA:18484 +xref: http://linkedlifedata.com/resource/umls/id/C0227902 +xref: http://www.snomedbrowser.com/Codes/Details/280107002 +xref: MA:0001716 +xref: NCIT:C32959 +xref: UMLS:C0227902 {source="ncithesaurus:Left_Fallopian_Tube"} +is_a: UBERON:0003889 ! fallopian tube +intersection_of: UBERON:0003889 ! fallopian tube +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0001304 +name: germinal epithelium of ovary +def: "layer of simple cuboidal cells covering surface of ovary[WP]." [http://en.wikipedia.org/wiki/Germinal_epithelium_(female), http://en.wikipedia.org/wiki/Talk\:Germinal_epithelium_(female), http://www.ncbi.nlm.nih.gov/pubmed/16923182] +comment: Controversial - see article. Requires expert input. Also check BTO placement +synonym: "epithelium superficiale (ovarium)" EXACT [] +synonym: "female coelomic epithelium" RELATED [EMAPA:17384] +synonym: "germinal epithelium (female)" EXACT [http://en.wikipedia.org/wiki/Germinal_epithelium_(female)] +synonym: "ovarian surface epithelium" EXACT [BTO:0004483] +synonym: "ovary germinal epithelium" EXACT [] +synonym: "ovary surface epithelium" RELATED [EMAPA:17963] +synonym: "surface epithelium of ovary" EXACT [] +xref: BTO:0004483 +xref: EHDAA:8126 +xref: EMAPA:17963 +xref: FMA:18629 +xref: http://en.wikipedia.org/wiki/Germinal_epithelium_(female) +xref: http://linkedlifedata.com/resource/umls/id/C0227875 +xref: http://www.snomedbrowser.com/Codes/Details/258308007 +xref: MA:0001711 +xref: NCIT:C61518 +xref: RETIRED_EHDAA2:0001361 +xref: UMLS:C0227875 {source="ncithesaurus:Ovarian_Surface_Epithelium"} +xref: VHOG:0000630 +is_a: UBERON:0000484 ! simple cuboidal epithelium +is_a: UBERON:0004911 ! epithelium of female gonad +intersection_of: UBERON:0000484 ! simple cuboidal epithelium +intersection_of: part_of UBERON:0001307 ! capsule of ovary +relationship: part_of UBERON:0001307 ! capsule of ovary + +[Term] +id: UBERON:0001305 +name: ovarian follicle +def: "A spherical aggregation of cells in the ovary that contains a single oocyte[WP,modified]." [http://en.wikipedia.org/wiki/Ovarian_follicle, http://www.repropedia.org/ovarian-follicle] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "egg follicle" RELATED [ZFA:0001110] +synonym: "follicle of ovary" EXACT [] +synonym: "follicle of ovary viewed macroscopically" EXACT [FMA:18640] +synonym: "folliculi ovarici primarii" RELATED LATIN [http://en.wikipedia.org/wiki/Ovarian_follicle] +synonym: "folliculi ovarici vesiculosi" RELATED LATIN [http://en.wikipedia.org/wiki/Ovarian_follicle] +synonym: "ovary follicle" EXACT [MA:0001707] +xref: BTO:0000475 +xref: CALOHA:TS-0726 +xref: EMAPA:35627 +xref: FMA:18640 +xref: GAID:371 +xref: http://linkedlifedata.com/resource/umls/id/C0018120 +xref: http://www.snomedbrowser.com/Codes/Details/361111009 +xref: MA:0001707 +xref: MAT:0000449 +xref: MESH:D006080 +xref: NCIT:C33244 +xref: Ovarian:follicle +xref: TAO:0001110 +xref: UMLS:C0018120 {source="ncithesaurus:Ovarian_Follicle"} +xref: VHOG:0001536 +xref: ZFA:0001110 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: develops_from UBERON:0005296 {source="Wikipedia"} ! ovary sex cord +relationship: has_part UBERON:0000038 ! follicular fluid +relationship: part_of UBERON:0000992 ! ovary + +[Term] +id: UBERON:0001306 +name: cumulus oophorus +def: "A cluster of cells that project into the cavity of the mature ovarian follicle. It is released with the embedded oocyte during ovulation. In order for fertilization to occur this layer must be penetrated by the spermatocyte. [WP,modified]." [http://en.wikipedia.org/wiki/Cumulus_oophorus] +subset: pheno_slim +subset: uberon_slim +synonym: "cumulus ovaricus" EXACT LATIN [FMA:18659] +synonym: "discus proligerus" EXACT [] +synonym: "ovarian cumulus" EXACT [GO:0001550] +xref: Cumulus:oophorus +xref: EMAPA:35267 +xref: FMA:18659 +xref: http://www.snomedbrowser.com/Codes/Details/258586009 +xref: MA:0002414 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0034922 ! cell cluster +relationship: part_of UBERON:0005170 ! granulosa cell layer + +[Term] +id: UBERON:0001307 +name: capsule of ovary +def: "A capsule that surrounds a female gonad." [OBOL:automatic] +subset: pheno_slim +synonym: "ovarian capsule" EXACT [] +synonym: "ovary capsule" EXACT [] +xref: EMAPA:35626 +xref: FMA:18662 +xref: http://linkedlifedata.com/resource/umls/id/C0227877 +xref: http://www.snomedbrowser.com/Codes/Details/258491008 +xref: MA:0001706 +xref: NCIT:C49265 +xref: UMLS:C0227877 {source="ncithesaurus:Ovarian_Capsule"} +is_a: UBERON:0003893 ! capsule +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0003893 ! capsule +intersection_of: bounding_layer_of UBERON:0000992 ! ovary +relationship: bounding_layer_of UBERON:0000992 ! ovary +relationship: part_of UBERON:0000992 ! ovary + +[Term] +id: UBERON:0001308 +name: external iliac artery +def: "The external iliac artery is a large artery in the pelvic region that carries blood to the lower limb. The external iliac artery is a paired artery, meaning there is one on each side of the body: a right external iliac artery and left external iliac artery. The external iliac artery is accompanied by the external iliac vein, which is located posterior to the artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/External_iliac_artery] +subset: uberon_slim +synonym: "arteria iliaca externa" RELATED LATIN [http://en.wikipedia.org/wiki/External_iliac_artery] +xref: BTO:0004666 +xref: EHDAA2:0000463 +xref: EHDAA:4337 +xref: EMAPA:17614 +xref: FMA:18805 +xref: galen:ExternalIliacArtery +xref: http://en.wikipedia.org/wiki/External_iliac_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226398 +xref: http://www.snomedbrowser.com/Codes/Details/181352000 +xref: MA:0001973 +xref: NCIT:C32558 +xref: OpenCyc:Mx4rvkh47pwpEbGdrcN5Y29ycA +xref: UMLS:C0226398 {source="ncithesaurus:External_Iliac_Artery"} +is_a: UBERON:0005609 {source="MA"} ! iliac artery +relationship: part_of UBERON:0001191 ! common iliac artery + +[Term] +id: UBERON:0001309 +name: internal iliac artery +def: "The internal iliac artery (formerly known as the hypogastric artery) is the main artery of the pelvis. [WP,unvetted]." [http://en.wikipedia.org/wiki/Internal_iliac_artery] +subset: uberon_slim +synonym: "arteria iliaca interna" RELATED LATIN [http://en.wikipedia.org/wiki/Internal_iliac_artery] +synonym: "hypogastric artery" RELATED [BTO:0004667] +xref: BTO:0004667 +xref: EMAPA:17860 +xref: FMA:18808 +xref: galen:InternalIliacArtery +xref: http://en.wikipedia.org/wiki/Internal_iliac_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226364 +xref: http://www.snomedbrowser.com/Codes/Details/181346001 +xref: MA:0001974 +xref: NCIT:C32845 +xref: UMLS:C0226364 {source="ncithesaurus:Internal_Iliac_Artery"} +is_a: UBERON:0005609 {source="MA"} ! iliac artery +relationship: part_of UBERON:0001191 ! common iliac artery + +[Term] +id: UBERON:0001310 +name: umbilical artery +def: "The umbilical artery is a paired artery (with one for each half of the body) that is found in the abdominal and pelvic regions. In the fetus, it extends into the umbilical cord. [WP,unvetted]." [http://en.wikipedia.org/wiki/Umbilical_artery, https://github.com/obophenotype/uberon/issues/328] +subset: pheno_slim +subset: uberon_slim +synonym: "a. umbilicalis" RELATED LATIN [http://en.wikipedia.org/wiki/Umbilical_artery] +xref: BTO:0000841 +xref: CALOHA:TS-1077 +xref: EHDAA:1026 +xref: EHDAA:410 +xref: EMAPA:16331 +xref: EMAPA:16372 +xref: FMA:18820 +xref: GAID:516 +xref: http://linkedlifedata.com/resource/umls/id/C0041632 +xref: http://www.snomedbrowser.com/Codes/Details/261404000 +xref: MA:0002072 +xref: MESH:D014469 +xref: NCIT:C33827 +xref: OpenCyc:Mx4rCWdhMGWbEd2AAABQjYGu0g +xref: RETIRED_EHDAA2:0002106 +xref: Umbilical:artery +xref: UMLS:C0041632 {source="ncithesaurus:Umbilical_Artery"} +is_a: UBERON:0001637 ! artery +is_a: UBERON:0010260 ! umbilical blood vessel + +[Term] +id: UBERON:0001311 +name: inferior vesical artery +def: "An artery that supplies blood to the lower urinary bladder." [http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "arteria vesicali inferior" EXACT LATIN [http://en.wikipedia.org/wiki/Inferior_vesical_artery] +synonym: "arteria vesicalis inferior" EXACT LATIN [http://en.wikipedia.org/wiki/Inferior_vesical_artery] +synonym: "arteria vesicalis inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_vesical_artery] +xref: EMAPA:37089 {source="MA:th"} +xref: FMA:18823 +xref: http://en.wikipedia.org/wiki/Inferior_vesical_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226377 +xref: http://www.snomedbrowser.com/Codes/Details/43210002 +xref: MA:0002079 +xref: NCIT:C52685 +xref: UMLS:C0226377 {source="ncithesaurus:Inferior_Vesical_Artery"} +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0009027 ! vesical artery +intersection_of: UBERON:0009027 ! vesical artery +intersection_of: supplies UBERON:0006082 ! fundus of urinary bladder +relationship: branching_part_of UBERON:0001309 ! internal iliac artery +relationship: part_of UBERON:0001309 ! internal iliac artery +relationship: supplies UBERON:0000998 {gci_filler="UBERON:0003101", gci_relation="part_of"} ! seminal vesicle +relationship: supplies UBERON:0001000 {gci_filler="UBERON:0003101", gci_relation="part_of"} ! vas deferens +relationship: supplies UBERON:0002367 {gci_filler="UBERON:0003101", gci_relation="part_of"} ! prostate gland +relationship: supplies UBERON:0006082 ! fundus of urinary bladder + +[Term] +id: UBERON:0001312 +name: superior vesical artery +def: "An artery that supplies blood to the upper urinary bladder." [http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "arteria vesicali superior" EXACT LATIN [http://en.wikipedia.org/wiki/Superior_vesical_artery] +synonym: "arteria vesicalis superior" EXACT LATIN [http://en.wikipedia.org/wiki/Superior_vesical_artery] +synonym: "arteriae vesicales superiores" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_vesical_artery] +xref: EMAPA:37123 {source="MA:th"} +xref: FMA:18839 +xref: http://en.wikipedia.org/wiki/Superior_vesical_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226376 +xref: http://www.snomedbrowser.com/Codes/Details/113268007 +xref: MA:0002080 +xref: NCIT:C52686 +xref: UMLS:C0226376 {source="ncithesaurus:Superior_Vesical_Artery"} +is_a: UBERON:0003468 ! ureteric segment of renal artery +is_a: UBERON:0009027 ! vesical artery +intersection_of: UBERON:0009027 ! vesical artery +intersection_of: supplies UBERON:0000056 ! ureter + +[Term] +id: UBERON:0001313 +name: iliolumbar artery +def: "The iliolumbar artery is a branch of the posterior trunk of the internal iliac artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/Iliolumbar_artery] +subset: uberon_slim +synonym: "arteria iliolumbalis" RELATED LATIN [http://en.wikipedia.org/wiki/Iliolumbar_artery] +synonym: "ilio-lumbar artery" EXACT [] +xref: EMAPA:37085 {source="MA:th"} +xref: FMA:18845 +xref: http://linkedlifedata.com/resource/umls/id/C0226367 +xref: http://www.snomedbrowser.com/Codes/Details/113267002 +xref: Iliolumbar:artery +xref: MA:0001976 +xref: NCIT:C52859 +xref: UMLS:C0226367 {source="ncithesaurus:Iliolumbar_Artery"} +is_a: UBERON:0004573 ! systemic artery +relationship: branching_part_of UBERON:0001309 ! internal iliac artery +relationship: part_of UBERON:0001309 ! internal iliac artery + +[Term] +id: UBERON:0001314 +name: obturator artery +def: "The obturator artery passes antero-inferiorly (forwards and downwards) on the lateral wall of the pelvis, to the upper part of the obturator foramen, and, escaping from the pelvic cavity through the obturator canal, it divides into both an anterior and a posterior branch. [WP,unvetted]." [http://en.wikipedia.org/wiki/Obturator_artery] +subset: uberon_slim +synonym: "arteria obturatoria" RELATED LATIN [http://en.wikipedia.org/wiki/Obturator_artery] +xref: EMAPA:37671 {source="MA:th"} +xref: FMA:18865 +xref: http://linkedlifedata.com/resource/umls/id/C0226369 +xref: http://www.snomedbrowser.com/Codes/Details/244302006 +xref: MA:0002008 +xref: NCIT:C33190 +xref: Obturator:artery +xref: UMLS:C0226369 {source="ncithesaurus:Obturator_Artery"} +is_a: UBERON:0004573 ! systemic artery +relationship: branching_part_of UBERON:0001309 ! internal iliac artery +relationship: part_of UBERON:0001309 ! internal iliac artery + +[Term] +id: UBERON:0001315 +name: superior gluteal artery +def: "The superior gluteal artery (gluteal artery) is the largest branch of the internal iliac artery, and appears to be the continuation of the posterior division of that vessel. It is a short artery which runs backward between the lumbosacral trunk and the first sacral nerve, and, passing out of the pelvis above the upper border of the Piriformis, immediately divides into a superficial and a deep branch. Within the pelvis it gives off a few branches to the Iliacus, Piriformis, and Obturator internus, and just previous to quitting that cavity, a nutrient artery which enters the ilium. [WP,unvetted]." [http://en.wikipedia.org/wiki/Superior_gluteal_artery] +subset: uberon_slim +synonym: "arteria glutea superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_gluteal_artery] +synonym: "arteria glutealis superior" EXACT [] +xref: EMAPA:37120 {source="MA:th"} +xref: FMA:18868 +xref: http://en.wikipedia.org/wiki/Superior_gluteal_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226371 +xref: http://www.snomedbrowser.com/Codes/Details/181354004 +xref: MA:0002054 +xref: NCIT:C32688 +xref: UMLS:C0226371 {source="ncithesaurus:Gluteal_Artery"} +is_a: UBERON:0004573 ! systemic artery +relationship: branching_part_of UBERON:0001309 ! internal iliac artery +relationship: part_of UBERON:0001309 ! internal iliac artery +relationship: supplies UBERON:0001273 ! ilium +relationship: supplies UBERON:0001369 ! iliacus muscle +relationship: supplies UBERON:0008529 ! piriformis muscle +relationship: supplies UBERON:0011048 ! obturator internus + +[Term] +id: UBERON:0001316 +name: external iliac vein +def: "A large vein that connects the femoral vein to the common iliac vein. Their origin is at the inferior margin of the inguinal ligaments and they terminate when they join the internal iliac veins (to form the common iliac veins). Both external iliac veins are accompanied along their course by external iliac arteries. [WP,modified]." [http://en.wikipedia.org/wiki/External_iliac_vein] +subset: uberon_slim +synonym: "vena iliaca externa" RELATED LATIN [http://en.wikipedia.org/wiki/External_iliac_vein] +xref: EHDAA2:0000464 +xref: EMAPA:37144 {source="MA:th"} +xref: FMA:18883 +xref: galen:ExternalIliacVein +xref: http://en.wikipedia.org/wiki/External_iliac_vein +xref: http://linkedlifedata.com/resource/umls/id/C0226761 +xref: http://www.snomedbrowser.com/Codes/Details/181400000 +xref: MA:0002144 +xref: NCIT:C32560 +xref: OpenCyc:Mx4rwQUYtZwpEbGdrcN5Y29ycA +xref: UMLS:C0226761 {source="ncithesaurus:External_Iliac_Vein"} +is_a: UBERON:0005610 {source="MA"} ! iliac vein +relationship: drains UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0001317 +name: internal iliac vein +def: "A vein that begins near the upper part of the greater sciatic foramen, passes upward behind and slightly medial to the hypogastric artery and, at the brim of the pelvis, joins with the external iliac to form the common iliac vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Internal_iliac_vein] +subset: uberon_slim +synonym: "hypogastric vein" RELATED [http://en.wikipedia.org/wiki/Internal_iliac_vein, MA:0002139] +synonym: "v. hypogastrica" RELATED LATIN [http://en.wikipedia.org/wiki/Internal_iliac_vein] +synonym: "v. iliaca interna" RELATED LATIN [http://en.wikipedia.org/wiki/Internal_iliac_vein] +xref: EHDAA2:0000874 +xref: EMAPA:37148 {source="MA:th"} +xref: FMA:18884 +xref: galen:InternalIliacVein +xref: http://en.wikipedia.org/wiki/Internal_iliac_vein +xref: http://linkedlifedata.com/resource/umls/id/C0226764 +xref: http://www.snomedbrowser.com/Codes/Details/181399007 +xref: MA:0002139 +xref: MA:0002145 +xref: NCIT:C32847 +xref: UMLS:C0226764 {source="ncithesaurus:Internal_Iliac_Vein"} +xref: VHOG:0000749 +is_a: UBERON:0005610 {source="MA"} ! iliac vein +relationship: drains UBERON:0005179 ! pelvic region element + +[Term] +id: UBERON:0001318 +name: inferior vesical vein +xref: EMAPA:37158 {source="MA:th"} +xref: FMA:18890 +xref: MA:0002264 +is_a: UBERON:0002460 {is_inferred="true", source="MA"} ! vesical vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0006082 ! fundus of urinary bladder +relationship: drains UBERON:0006082 ! fundus of urinary bladder + +[Term] +id: UBERON:0001319 +name: vaginal vein +def: "One the veins that drains the vaginal venous plexus, into the hypogastric veins. [WP,modified]." [http://en.wikipedia.org/wiki/Vaginal_venous_plexus] +subset: uberon_slim +synonym: "vagina vein" EXACT [OBOL:automatic] +synonym: "vein of vagina" EXACT [OBOL:automatic] +xref: EMAPA:37796 {source="MA:th"} +xref: FMA:18899 +xref: http://www.snomedbrowser.com/Codes/Details/424336009 +xref: MA:0002251 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0001638 ! vein +intersection_of: part_of UBERON:0000996 ! vagina +relationship: part_of UBERON:0000996 ! vagina +relationship: part_of UBERON:0001317 ! internal iliac vein +relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein + +[Term] +id: UBERON:0001320 +name: iliolumbar vein +def: "The iliolumbar vein is the vena comitans of the iliolumbar artery. The obturator nerve crosses superficial to it. A single vein is found more commonly than a double vein. It drains vertebral segments four and five. It is closely related to the ascending lumbar vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Iliolumbar_vein] +subset: uberon_slim +synonym: "ilio-lumbar vein" EXACT [] +synonym: "vena iliolumbalis" RELATED LATIN [http://en.wikipedia.org/wiki/Iliolumbar_vein] +xref: EMAPA:37152 {source="MA:th"} +xref: FMA:18902 +xref: http://linkedlifedata.com/resource/umls/id/C0226760 +xref: http://www.snomedbrowser.com/Codes/Details/286793006 +xref: Iliolumbar:vein +xref: MA:0002146 +xref: NCIT:C53048 +xref: UMLS:C0226760 {source="ncithesaurus:Iliolumbar_Vein"} +is_a: UBERON:0001638 ! vein +relationship: drains UBERON:0002412 ! vertebra +relationship: part_of UBERON:0001317 ! internal iliac vein +relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein + +[Term] +id: UBERON:0001321 +name: obturator vein +def: "The obturator vein begins in the upper portion of the adductor region of the thigh and enters the pelvis through the upper part of the obturator foramen, in the obturator canal. It runs backward and upward on the lateral wall of the pelvis below the obturator artery, and then passes between the ureter and the hypogastric artery, to end in the hypogastric vein. It has an anterior and posterior branch (similar to obturator artery). [WP,unvetted]." [http://en.wikipedia.org/wiki/Obturator_veins] +subset: uberon_slim +xref: EMAPA:37677 {source="MA:th"} +xref: FMA:18914 +xref: http://linkedlifedata.com/resource/umls/id/C0226776 +xref: http://www.snomedbrowser.com/Codes/Details/20146009 +xref: MA:0002183 +xref: NCIT:C53056 +xref: Obturator:veins +xref: UMLS:C0226776 {source="ncithesaurus:Obturator_Vein"} +is_a: UBERON:0001638 ! vein +relationship: part_of UBERON:0001317 ! internal iliac vein +relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein + +[Term] +id: UBERON:0001322 +name: sciatic nerve +def: "A large nerve that supplies nearly the whole of the skin of the leg, the muscles of the back of the thigh, and those of the leg and foot. It begins in the lower back and runs through the buttock and down the lower limb." [http://en.wikipedia.org/wiki/Sciatic_nerve] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "ischiadic nerve" RELATED [http://en.wikipedia.org/wiki/Sciatic_nerve] +synonym: "ischiatic nerve" RELATED [http://en.wikipedia.org/wiki/Sciatic_nerve] +synonym: "nervus ischiadicus" RELATED LATIN [http://en.wikipedia.org/wiki/Sciatic_nerve] +synonym: "nervus ischiadicus" RELATED [BTO:0001221] +synonym: "nervus sciaticus" RELATED [BTO:0001221] +xref: BIRNLEX:1133 +xref: BTO:0001221 +xref: CALOHA:TS-0899 +xref: EFO:0001417 +xref: EHDAA2:0001779 +xref: EHDAA:5659 +xref: EMAPA:18577 +xref: FMA:19034 +xref: GAID:852 +xref: http://linkedlifedata.com/resource/umls/id/C0036394 +xref: http://www.snomedbrowser.com/Codes/Details/181050003 +xref: MA:0001172 +xref: MESH:D012584 +xref: NCIT:C52810 +xref: OpenCyc:Mx4rv7MlDJwpEbGdrcN5Y29ycA +xref: Sciatic:nerve +xref: UMLS:C0036394 {source="BIRNLEX:1133"} +xref: UMLS:C0036394 {source="ncithesaurus:Sciatic_Nerve"} +xref: VHOG:0000894 +is_a: UBERON:0001021 ! nerve +relationship: innervates UBERON:0001511 ! skin of leg +relationship: part_of UBERON:0001815 ! lumbosacral nerve plexus + +[Term] +id: UBERON:0001323 +name: tibial nerve +def: "The tibial nerve is a branch of the sciatic nerve. The tibial nerve passes through the popliteal fossa to pass below the arch of soleus. In the popliteal fossa the nerve gives off branches to gastrocnemius, popliteus, soleus and plantaris muscles, an articular branch to the knee joint, and a cutaneous branch that will become the sural nerve. The sural nerve is joined by fibres from the common peroneal nerve and runs down the calf to supply the lateral side of the foot. Below the soleus muscle the nerve lies close to the tibia and supplies the tibialis posterior, the flexor digitorum longus and the flexor hallucis longus. The nerve passes into the foot running posterior to the medial malleolus. Here it is bound down by the flexor retinaculum in company with the posterior tibial artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/Tibial_nerve] +subset: uberon_slim +synonym: "medial popliteal nerve" EXACT [] +synonym: "n. tibialis" RELATED LATIN [http://en.wikipedia.org/wiki/Tibial_nerve] +xref: EMAPA:36512 +xref: FMA:19035 +xref: GAID:854 +xref: http://linkedlifedata.com/resource/umls/id/C0040186 +xref: http://www.snomedbrowser.com/Codes/Details/181078002 +xref: MA:0001173 +xref: MESH:D013979 +xref: NCIT:C52809 +xref: OpenCyc:Mx4rwNya8JwpEbGdrcN5Y29ycA +xref: Tibial:nerve +xref: UMLS:C0040186 {source="ncithesaurus:Tibial_Nerve"} +is_a: UBERON:0003431 ! leg nerve +disjoint_from: UBERON:0001324 {source="lexical"} ! common fibular nerve +relationship: branching_part_of UBERON:0001322 {source="FMA", source="WP"} ! sciatic nerve +relationship: part_of UBERON:0001322 ! sciatic nerve + +[Term] +id: UBERON:0001324 +name: common fibular nerve +def: "A nerve arising at the terminal division of the sciatic nerve at the popliteal fossa and extending to the neck of the fibula, ultimately innervating the Peroneus muscle[MP]." [MP:0011211] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "common peroneal nerve" EXACT [] +synonym: "extrernal peroneal nerve" EXACT [MP:0011211] +synonym: "lateral popliteal nerve" EXACT [MP:0011211] +synonym: "n. fibularis communis" RELATED LATIN [http://en.wikipedia.org/wiki/Common_fibular_nerve] +synonym: "n. peroneus communis" RELATED LATIN [http://en.wikipedia.org/wiki/Common_fibular_nerve] +synonym: "nervus fibularis communis" RELATED LATIN [] +synonym: "nervus peroneus communis" EXACT LATIN [FMA:19039, FMA:TA] +xref: EFO:0003062 +xref: FMA:19039 +xref: GAID:853 +xref: http://en.wikipedia.org/wiki/Common_fibular_nerve +xref: http://linkedlifedata.com/resource/umls/id/C0031173 +xref: http://www.snomedbrowser.com/Codes/Details/181077007 +xref: MA:0001169 +xref: MESH:D010543 +xref: NCIT:C52814 +xref: OpenCyc:Mx4rvwKexZwpEbGdrcN5Y29ycA +xref: UMLS:C0031173 {source="ncithesaurus:Peroneal_Nerve"} +is_a: UBERON:0003431 ! leg nerve +is_a: UBERON:0035652 ! fibular nerve +relationship: branching_part_of UBERON:0001322 ! sciatic nerve +relationship: part_of UBERON:0001322 ! sciatic nerve + +[Term] +id: UBERON:0001325 +name: muscle of pelvis +def: "Muscle (organ) which is a part of the pelvis. Examples: levator ani," [FMA:19086] +subset: pheno_slim +subset: uberon_slim +synonym: "muscle organ of pelvis" EXACT [OBOL:automatic] +synonym: "pelvic muscle" EXACT [FMA:19086] +synonym: "pelvis muscle" EXACT [] +synonym: "pelvis muscle organ" EXACT [OBOL:automatic] +xref: EMAPA:18184 +xref: EMAPA:37481 {source="MA:th"} +xref: FMA:19086 +xref: MA:0000534 +is_a: UBERON:0003833 {source="MA"} ! abdominal segment muscle +is_a: UBERON:0005179 ! pelvic region element +intersection_of: UBERON:0014892 {source="FMAdef"} ! skeletal muscle organ +intersection_of: part_of UBERON:0002355 {source="FMAdef"} ! pelvic region of trunk + +[Term] +id: UBERON:0001326 +name: levator ani muscle +def: "The Levator ani is a broad, thin muscle, situated on the side of the pelvis. It is attached to the inner surface of the side of the lesser pelvis, and unites with its fellow of the opposite side to form the greater part of the floor of the pelvic cavity. It supports the viscera in pelvic cavity, and surrounds the various structures which pass through it. In combination with the Coccygeus muscle, it forms the pelvic diaphragm. [WP,unvetted]." [http://en.wikipedia.org/wiki/Levator_ani] +subset: uberon_slim +synonym: "levator ani" EXACT [MA:0002332] +synonym: "musculus levator ani" EXACT LATIN [http://en.wikipedia.org/wiki/Levator_ani] +xref: EMAPA:19165 +xref: FMA:19087 +xref: http://linkedlifedata.com/resource/umls/id/C0224384 +xref: http://www.snomedbrowser.com/Codes/Details/181753008 +xref: Levator:ani +xref: MA:0002332 +xref: NCIT:C32984 +xref: UMLS:C0224384 {source="ncithesaurus:Levator_Ani"} +is_a: UBERON:0001325 ! muscle of pelvis +relationship: has_muscle_origin UBERON:0002355 {notes="inner surface of the side of the lesser pelvis", source="dbpedia"} ! pelvic region of trunk + +[Term] +id: UBERON:0001327 +name: coccygeus muscle +def: "The Coccygeus is a muscle of the pelvic wall (i.e. peripheral to the pelvic floor), situated behind the levator ani and in front of the sacrospinous ligament. It is a triangular plane of muscular and tendinous fibers, arising by its apex from the spine of the ischium and sacrospinous ligament, and inserted by its base into the margin of the coccyx and into the side of the lowest piece of the sacrum. It assists the Levator ani and Piriformis in closing in the back part of the outlet of the pelvis. [WP,unvetted]." [http://en.wikipedia.org/wiki/Coccygeus_muscle] +subset: organ_slim +subset: uberon_slim +synonym: "coccygeus" EXACT [MA:0002277] +synonym: "ischiococcygeus" EXACT [] +synonym: "musculus coccygeus" RELATED LATIN [http://en.wikipedia.org/wiki/Coccygeus_muscle] +synonym: "musculus ischiococcygeus" EXACT LATIN [FMA:19088, FMA:TA] +xref: Coccygeus:muscle +xref: EMAPA:37482 {source="MA:th"} +xref: FMA:19088 +xref: MA:0002277 +is_a: UBERON:0001325 ! muscle of pelvis +is_a: UBERON:0015212 ! lateral structure +relationship: has_muscle_origin UBERON:0009000 {notes="Sacrospinous ligament and ischial spine", source="dbpedia"} ! ischial spine +relationship: in_lateral_side_of UBERON:0002355 ! pelvic region of trunk +relationship: innervated_by UBERON:0009625 {notes="sacral nerves: S4 S5 or S3-S4", source="dbpedia"} ! sacral nerve + +[Term] +id: UBERON:0001328 +name: lobe of prostate +def: "A portion of a prostate that forms a lobe." [https://github.com/obophenotype/uberon/issues/665] +synonym: "lobe of prostate gland" EXACT [] +synonym: "prostate gland lobe" EXACT [] +synonym: "prostatic lobe" EXACT [] +xref: BTO:0000548 +xref: EMAPA:35712 +xref: FMA:19570 +xref: http://linkedlifedata.com/resource/umls/id/C0227970 +xref: http://www.snomedbrowser.com/Codes/Details/279692004 +xref: MA:0001738 +xref: NCIT:C52726 +xref: UMLS:C0227970 {source="ncithesaurus:Prostate_Gland_Lobe"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0009912 ! anatomical lobe +intersection_of: UBERON:0009912 ! anatomical lobe +intersection_of: part_of UBERON:0002367 ! prostate gland +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/RDruzinsky +property_value: dc-contributor https://github.com/tfhayamizu +property_value: dc-contributor https://github.com/uberon +relationship: part_of UBERON:0002367 ! prostate gland + +[Term] +id: UBERON:0001329 +name: prostate gland anterior lobe +subset: pheno_slim +synonym: "anterior lobe of prostate" EXACT [FMA:19574] +synonym: "anterior lobe of prostate gland" EXACT [] +synonym: "anterior prostate" RELATED [] +synonym: "anterior prostate gland" EXACT [EMAPA:29794] +synonym: "commissura prostatae" EXACT LATIN [FMA:19574, FMA:TA] +synonym: "commissure of prostate" EXACT [] +synonym: "isthmus of prostate" EXACT [] +synonym: "isthmus of prostate gland" EXACT [] +synonym: "isthmus prostatae" EXACT LATIN [FMA:19574, FMA:TA] +synonym: "prostate gland anterior lobe" EXACT [] +synonym: "prostatic isthmus" EXACT [] +xref: BTO:0003158 +xref: EMAPA:29794 +xref: FMA:19574 +xref: http://www.snomedbrowser.com/Codes/Details/279693009 +xref: MA:0002422 +is_a: UBERON:0001328 ! lobe of prostate +disjoint_from: UBERON:0035341 {source="lexical"} ! posterior lobe of prostate + +[Term] +id: UBERON:0001330 +name: pampiniform plexus +def: "The pampiniform plexus is a network of many small veins found in the male spermatic cord. It is formed by the union of multiple spermatic veins from the back of the testis and tributaries from the epididymis. The veins of the plexus ascend along the cord in front of the ductus deferens. Below the subcutaneous inguinal ring they unite to form three or four veins, which pass along the inguinal canal, and, entering the abdomen through the abdominal inguinal ring, coalesce to form two veins. These again unite to form a single vein, the testicular vein, which opens on the right side into the inferior vena cava, at an acute angle, and on the left side into the left renal vein, at a right angle. The pampinoform plexus forms the chief mass of the cord. In addition to its function in venous return from the testes, the pampiniform plexus also plays a role in the temperature regulation of the testes. It acts as a heat exchanger, cooling blood in adjacent arteries. An abnormal enlargement of the pampiniform plexus is a medical condition called varicocele. [WP,unvetted]." [http://en.wikipedia.org/wiki/Pampiniform_venous_plexus] +subset: uberon_slim +synonym: "pampiniform venous plexus" EXACT [] +synonym: "plexus of veins of fascia of prostate" EXACT [] +synonym: "plexus venosus pampiniformis" EXACT LATIN [FMA:19607, FMA:TA] +synonym: "venous plexus of fascia of prostate" EXACT [] +synonym: "venous plexus of fascia of prostate gland" EXACT [] +xref: EMAPA:37385 {source="MA:th"} +xref: FMA:19607 +xref: http://en.wikipedia.org/wiki/Pampiniform_venous_plexus +xref: http://www.snomedbrowser.com/Codes/Details/279661001 +xref: MA:0001866 +is_a: UBERON:0001593 ! venous plexus +relationship: located_in UBERON:0005352 ! spermatic cord + +[Term] +id: UBERON:0001331 +name: skin of penis +def: "A zone of skin that is part of a penis [Automatically generated definition]." [OBOL:automatic] +synonym: "penile skin" EXACT [FMA:19638] +synonym: "penis skin" EXACT [] +synonym: "penis zone of skin" EXACT [OBOL:automatic] +synonym: "zone of skin of penis" EXACT [OBOL:automatic] +xref: EMAPA:35675 +xref: FMA:19638 +xref: http://www.snomedbrowser.com/Codes/Details/35900000 +xref: MA:0002727 +is_a: UBERON:0000014 ! zone of skin +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0000989 ! penis +relationship: continuous_with UBERON:0001085 ! skin of trunk +relationship: part_of UBERON:0000989 ! penis + +[Term] +id: UBERON:0001332 +name: prepuce of penis +def: "A retractable double-layered fold of skin and mucous membrane that covers the glans penis and protects the urinary meatus when the penis is not erect." [http://en.wikipedia.org/wiki/Foreskin, http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "foreskin" RELATED [FMA:19639] +synonym: "penile prepuce" EXACT [FMA:19639] +synonym: "praeputium" RELATED LATIN [http://en.wikipedia.org/wiki/Foreskin] +synonym: "prepuce" BROAD [http://en.wikipedia.org/wiki/Foreskin, MA:0000407] +synonym: "prepuce of male" EXACT [EMAPA:18989] +synonym: "prepucium" RELATED LATIN [http://en.wikipedia.org/wiki/Foreskin] +synonym: "preputium" BROAD [HP:0100587] +synonym: "preputium penis" EXACT LATIN [FMA:19639, FMA:TA] +xref: BTO:0001113 +xref: CALOHA:TS-0383 +xref: EFO:0001664 +xref: EMAPA:18989 +xref: EV:0100109 +xref: FMA:19639 +xref: http://en.wikipedia.org/wiki/Foreskin +xref: http://linkedlifedata.com/resource/umls/id/C0227952 +xref: http://www.snomedbrowser.com/Codes/Details/181426005 +xref: MA:0000407 +xref: NCIT:C33049 +xref: OpenCyc:Mx4rvVjlTZwpEbGdrcN5Y29ycA +xref: UMLS:C0227952 {source="ncithesaurus:Male_Prepuce"} +is_a: UBERON:0011374 ! prepuce +intersection_of: UBERON:0011374 ! prepuce +intersection_of: part_of UBERON:0000989 ! penis +relationship: adjacent_to UBERON:0001299 ! glans penis +relationship: develops_from UBERON:0035005 ! preputial swelling of male +relationship: part_of UBERON:0000989 ! penis +relationship: transformation_of UBERON:0035005 ! preputial swelling of male + +[Term] +id: UBERON:0001333 +name: male urethra +def: "A urethra that is part of a male reproductive system." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +xref: BTO:0004089 +xref: EMAPA:18692 +xref: FMA:19668 +xref: http://linkedlifedata.com/resource/umls/id/C0458452 +xref: http://www.snomedbrowser.com/Codes/Details/264085007 +xref: MA:0002640 +xref: Male:urethra +xref: NCIT:C33050 +xref: UMLS:C0458452 {source="ncithesaurus:Male_Urethra"} +is_a: UBERON:0000057 ! urethra +intersection_of: UBERON:0000057 ! urethra +intersection_of: part_of UBERON:0003101 ! male organism +relationship: part_of UBERON:0003101 ! male organism + +[Term] +id: UBERON:0001334 +name: female urethra +def: "A urethra that is part of a female reproductive system." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "urethra feminina" RELATED [BTO:0004088] +synonym: "urethra muliebris" RELATED [BTO:0004088] +xref: BTO:0004088 +xref: EMAPA:28747 +xref: Female:urethra +xref: FMA:19669 +xref: http://linkedlifedata.com/resource/umls/id/C0458485 +xref: http://www.snomedbrowser.com/Codes/Details/264469008 +xref: MA:0002637 +xref: NCIT:C32591 +xref: UMLS:C0458485 {source="ncithesaurus:Female_Urethra"} +is_a: UBERON:0000057 ! urethra +intersection_of: UBERON:0000057 ! urethra +intersection_of: part_of UBERON:0003100 ! female organism +relationship: part_of UBERON:0003100 ! female organism + +[Term] +id: UBERON:0001335 +name: prostatic urethra +def: "the widest and most dilatable part of the male urethra canal which runs almost vertically through the prostate from its base to its apex, lying nearer its anterior than its posterior surface; this portion of the urethral canal is spindle-shaped, being wider in the middle than at either extremity, and narrowest below, where it joins the membranous portion; it is lined by transitional epithelium and contains in its posterior wall, or floor, the orifices of the prostatic utricle, ejaculatory ducts, and prostatic ducts, collectively known as the seminal colliculus (aka verumontanum)" [MGI:anna, MP:0011777] +subset: pheno_slim +subset: uberon_slim +synonym: "male prostatic urethra" EXACT [MP:0011777] +synonym: "pars prostatica urethrae" EXACT LATIN [http://en.wikipedia.org/wiki/Prostatic_urethra] +synonym: "pars prostatica urethrae" EXACT [MP:0011777] +synonym: "pars prostatica urethrae" RELATED [BTO:0003163] +synonym: "prostatic part of male urethra" EXACT [MP:0011777] +synonym: "prostatic part of urethra" EXACT [] +xref: BTO:0003163 +xref: EMAPA:30942 +xref: FMA:19673 +xref: http://linkedlifedata.com/resource/umls/id/C0458450 +xref: http://www.snomedbrowser.com/Codes/Details/279434009 +xref: MA:0002646 +xref: NCIT:C13101 +xref: Prostatic:urethra +xref: UMLS:C0458450 {source="ncithesaurus:Prostatic_Portion_of_the_Male_Urethra"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0013522 ! subdivision of tube +relationship: contributes_to_morphology_of UBERON:0001333 ! male urethra +relationship: located_in UBERON:0002367 {source="FMA"} ! prostate gland +relationship: part_of UBERON:0001333 {source="FMA", source="MA"} ! male urethra + +[Term] +id: UBERON:0001336 +name: membranous urethra of male or female +subset: uberon_slim +synonym: "intermediate part of urethra" EXACT [] +synonym: "intermediate urethra" EXACT [] +synonym: "membranous part of urethra" EXACT [] +synonym: "membranous urethra" EXACT INCONSISTENT [MA:0002647] +synonym: "pars intermedia urethrae" EXACT LATIN [FMA:19674, FMA:TA] +synonym: "pars membranacea (urethrae)" EXACT [] +xref: EMAPA:37542 {source="MA:th"} +xref: MA:0002647 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0013522 ! subdivision of tube +relationship: part_of UBERON:0000057 ! urethra + +[Term] +id: UBERON:0001337 +name: spongiose part of urethra +def: "the longest part of the male urethra contained in the corpus spongiosum and extending from the end of the membranous portion to the external urethral orifice; commencing below the inferior fascia of the urogenital diaphragm it passes forward and upward to the front of the symphysis pubis; and then, in the flaccid condition of the penis, it bends downward and forward; while narrow and of uniform size in the body of the penis, it is dilated behind, within the bulb, and again anteriorly within the glans penis, where it forms the fossa navicularis urethrae; the spongy urethra is lined by pseudostratified columnar epithelium proximally, and by stratified squamous epithelium distally" [MGI:anna, MP:0011779] +subset: pheno_slim +subset: uberon_slim +synonym: "cavernous portion of male urethra" EXACT [MP:0011779] +synonym: "male spongiose urethra" EXACT [MP:0011779] +synonym: "male spongy urethra" EXACT [] +synonym: "pars cavernosa urethrae" EXACT [MP:0011779] +synonym: "pars spongiosa" EXACT LATIN [FMA:19675, FMA:TA] +synonym: "pars spongiosa (urethra masculina)" EXACT LATIN [FMA:19675, FMA:TA] +synonym: "pars spongiosa urethrae masculinae" EXACT [MP:0011779] +synonym: "penile urethra" EXACT [MP:0011779] +synonym: "spongiose urethra" EXACT [MP:0011779] +synonym: "spongy urethra (male)" EXACT [] +xref: EMAPA:30944 +xref: FMA:19675 +xref: http://www.snomedbrowser.com/Codes/Details/263341006 +xref: MA:0002644 +xref: Penile:urethra +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0013522 ! subdivision of tube +relationship: contributes_to_morphology_of UBERON:0001333 ! male urethra +relationship: located_in UBERON:0011183 ! corpus spongiosum of penis +relationship: part_of UBERON:0000989 {source="FMA"} ! penis +relationship: part_of UBERON:0001333 {source="FMA"} ! male urethra + +[Term] +id: UBERON:0001338 +name: urethral gland +def: "Any of the numerous small mucous-secreting glands located in the wall of the male or female urethra that help protect the epithelium from the corrosive urine" [MP:anna] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "gland of urethra" EXACT [OBOL:automatic] +synonym: "urethra gland" EXACT [] +synonym: "urethra gland (male or female)" EXACT [] +synonym: "urethral mucuous gland" EXACT [] +xref: EMAPA:37784 {source="MA:th"} +xref: FMA:19683 +xref: http://www.snomedbrowser.com/Codes/Details/279477005 +xref: MA:0001688 +is_a: UBERON:0000414 {source="MP"} ! mucous gland +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0000057 ! urethra +relationship: contributes_to_morphology_of UBERON:0000057 ! urethra +relationship: part_of UBERON:0000057 ! urethra + +[Term] +id: UBERON:0001339 +name: ischiocavernosus muscle +def: "The ischiocavernosus muscle is a muscle just below the surface of the perineum, present in both men and women. [WP,unvetted]." [http://en.wikipedia.org/wiki/Ischiocavernosus_muscle] +subset: organ_slim +subset: uberon_slim +synonym: "erector penis" RELATED [http://en.wikipedia.org/wiki/Ischiocavernosus_muscle] +synonym: "ischiocavernosi" RELATED [http://en.wikipedia.org/wiki/Ischiocavernosus_muscle] +synonym: "ischiocavernosus" RELATED [http://en.wikipedia.org/wiki/Ischiocavernosus_muscle] +synonym: "ischiocavernous muscle" RELATED [http://en.wikipedia.org/wiki/Ischiocavernosus_muscle] +synonym: "ishiocavernosus" RELATED [http://en.wikipedia.org/wiki/Ischiocavernosus_muscle] +synonym: "ishiocavernosus muscle" RELATED [http://en.wikipedia.org/wiki/Ischiocavernosus_muscle] +synonym: "musculus ishiocavernosus" EXACT LATIN [http://en.wikipedia.org/wiki/Ischiocavernosus_muscle] +xref: EMAPA:37455 {source="MA:th"} +xref: FMA:19730 +xref: http://linkedlifedata.com/resource/umls/id/C0224401 +xref: http://www.snomedbrowser.com/Codes/Details/244975004 +xref: Ischiocavernosus:muscle +xref: MA:0002330 +xref: NCIT:C52946 +xref: UMLS:C0224401 {source="ncithesaurus:Ischiocavernosus"} +is_a: UBERON:0002379 ! perineal muscle +relationship: has_muscle_origin UBERON:0001274 ! ischium + +[Term] +id: UBERON:0001340 +name: dorsal artery of penis +def: "The Dorsal Artery of the Penis ascends between the crus penis and the pubic symphysis, and, piercing the inferior fascia of the urogenital diaphragm, passes between the two layers of the suspensory ligament of the penis, and runs forward on the dorsum of the penis to the glans, where it divides into two branches, which supply the glans and prepuce. On the penis, it lies between the dorsal nerve and deep dorsal vein, the former being on its lateral side. It supplies the integument and fibrous sheath of the corpus cavernosum penis, sending branches through the sheath to anastomose with the deep artery of the penis. [WP,unvetted]." [http://en.wikipedia.org/wiki/Dorsal_artery_of_penis] +subset: uberon_slim +synonym: "arteria dorsalis penis" EXACT [BTO:0005088] +synonym: "dorsal artery of the penis" RELATED [BTO:0005088] +synonym: "dorsal penile artery" EXACT [FMA:19795] +synonym: "dorsal penis artery" EXACT [MA:0001946] +xref: BTO:0005088 +xref: EMAPA:37080 {source="MA:th"} +xref: FMA:19795 +xref: http://en.wikipedia.org/wiki/Dorsal_artery_of_penis +xref: http://www.snomedbrowser.com/Codes/Details/244294001 +xref: MA:0001946 +is_a: UBERON:0003835 ! abdominal segment blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0005156 ! reproductive structure +relationship: branching_part_of UBERON:0007315 {source="FMA"} ! internal pudendal artery +relationship: part_of UBERON:0007315 ! internal pudendal artery +relationship: part_of UBERON:0008320 {source="BTO"} ! common penile artery +relationship: supplies UBERON:0001299 ! glans penis + +[Term] +id: UBERON:0001341 +name: lesser sac +def: "The lesser sac, also known as the omental bursa, is the cavity in the abdomen that is formed by the lesser and greater omentum. Usually found in mammals, it is connected with the greater sac via the epiploic foramen (also known as the Foramen of Winslow). [WP,unvetted]." [http://en.wikipedia.org/wiki/Lesser_sac] +subset: uberon_slim +synonym: "bursa omentalis" EXACT LATIN [FMA:19800, FMA:TA] +synonym: "omental bursa" EXACT [] +xref: EHDAA2:0001296 +xref: EHDAA2:0004554 +xref: EHDAA:2335 +xref: EMAPA:16889 +xref: FMA:19800 +xref: http://linkedlifedata.com/resource/umls/id/C0230212 +xref: Lesser:sac +xref: MA:0000445 +xref: NCIT:C81014 +xref: UMLS:C0230212 {source="ncithesaurus:Omental_Bursa"} +xref: VHOG:0000458 +is_a: UBERON:0000063 ! organ subunit +relationship: located_in UBERON:0001179 ! peritoneal cavity +relationship: part_of UBERON:0035820 ! peritoneal sac + +[Term] +id: UBERON:0001342 +name: mesovarium +def: "The mesentery that suspends the ovary from the dorsal wall of the coelom[VHOG]." [http://en.wikipedia.org/wiki/Mesovarium, VHOG:0001566] +subset: uberon_slim +subset: vertebrate_core +synonym: "mesovarian ligament" RELATED [] +xref: AAO:0010531 +xref: EMAPA:17961 +xref: FMA:19815 +xref: http://en.wikipedia.org/wiki/Mesovarium +xref: http://linkedlifedata.com/resource/umls/id/C0230310 +xref: http://www.snomedbrowser.com/Codes/Details/279914000 +xref: MA:0003236 +xref: NCIT:C92440 +xref: TAO:0000333 +xref: UMLS:C0230310 {source="ncithesaurus:Mesovarian_Ligament"} +xref: VHOG:0001566 +xref: ZFA:0000333 +is_a: UBERON:0002095 ! mesentery +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0000992 ! ovary + +[Term] +id: UBERON:0001343 +name: seminiferous tubule of testis +def: "The tubules in the testes where spermatogenesis occurs." [https://github.com/obophenotype/uberon/issues/1381, ISBN:0-683-40008-8, MGI:csmith, MP:0002216] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "seminiferous cord" EXACT [EMAPA:18685] +synonym: "seminiferous tubule" EXACT [] +synonym: "testis - seminiferous tubule" EXACT [] +synonym: "tubuli seminiferi" EXACT [] +synonym: "tubuli seminiferi" RELATED LATIN [http://en.wikipedia.org/wiki/Seminiferous_tubule] +xref: AAO:0010399 +xref: BTO:0001235 +xref: CALOHA:TS-1239 +xref: EFO:0001404 +xref: EMAPA:18685 +xref: EMAPA:31476 +xref: EV:0100380 +xref: FMA:19825 +xref: GAID:400 +xref: http://linkedlifedata.com/resource/umls/id/C0036630 +xref: http://linkedlifedata.com/resource/umls/id/C1519236 +xref: http://www.snomedbrowser.com/Codes/Details/279614002 +xref: MA:0000412 +xref: MAT:0000503 +xref: MESH:D012671 +xref: NCIT:C13047 +xref: NCIT:C34293 +xref: Seminiferous:tubule +xref: UMLS:C0036630 {source="ncithesaurus:Seminiferous_Tubule"} +xref: UMLS:C1519236 {source="ncithesaurus:Seminiferous_Cord"} +xref: VHOG:0001363 +xref: XAO:0003088 +is_a: UBERON:0000025 ! tube +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005904 ! duct of male reproductive system +relationship: develops_from UBERON:0005297 {source="Wikipedia"} ! testis sex cord +relationship: part_of UBERON:0000473 ! testis + +[Term] +id: UBERON:0001344 +name: epithelium of vagina +def: "The epithelial layer of the vagina." [MP:0001140] +subset: pheno_slim +synonym: "epithelial tissue of vagina" EXACT [OBOL:automatic] +synonym: "epithelium, vaginal" RELATED [BTO:0000422] +synonym: "vagina epithelial tissue" EXACT [OBOL:automatic] +synonym: "vagina epithelium" EXACT [] +synonym: "vaginal epithelium" EXACT [] +xref: BTO:0000422 +xref: CALOHA:TS-1325 +xref: EMAPA:30991 +xref: FMA:19978 +xref: http://linkedlifedata.com/resource/umls/id/C0920840 +xref: MA:0001730 +xref: NCIT:C49313 +xref: UMLS:C0920840 {source="ncithesaurus:Vaginal_Epithelium"} +is_a: UBERON:0000486 ! multilaminar epithelium +is_a: UBERON:0004804 ! oviduct epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000996 ! vagina +relationship: contributes_to_morphology_of UBERON:0000996 ! vagina +relationship: part_of UBERON:0000996 ! vagina + +[Term] +id: UBERON:0001345 +name: obsolete fornix +subset: uberon_slim +xref: http://en.wikipedia.org/wiki/Vaginal_fornix_of_brain +is_obsolete: true +consider: UBERON:0000051 +consider: UBERON:0000052 + +[Term] +id: UBERON:0001346 +name: vaginal hymen +def: "A membrane that surrounds or partially covers the vaginal opening." [http://en.wikipedia.org/wiki/Hymen] +subset: pheno_slim +synonym: "hymen" BROAD [MESH:A05.360.319.779.479] +synonym: "hymen of vagina" EXACT [FMA:20005] +synonym: "hymen vaginae" EXACT [] +synonym: "hymen vaginae" RELATED LATIN [http://en.wikipedia.org/wiki/Hymen] +synonym: "vaginal corona" RELATED [http://en.wikipedia.org/wiki/Hymen] +xref: EMAPA:37795 {source="MA:th"} +xref: FMA:20005 +xref: http://en.wikipedia.org/wiki/Hymen +xref: http://linkedlifedata.com/resource/umls/id/C0020412 +xref: http://www.snomedbrowser.com/Codes/Details/245473005 +xref: MA:0002465 +xref: MESH:D006924 +xref: NCIT:C32750 +xref: UMLS:C0020412 {source="ncithesaurus:Hymen"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0000996 {source="FMA"} ! vagina + +[Term] +id: UBERON:0001347 +name: white adipose tissue +def: "Connective tissue consisting of fat-storing cells and arranged in lobular groups or along minor blood vessels[MP,modified]" [ISBN:0-683-40008-8, MP:0005670] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "adipocytus unigutturalis" EXACT [] +synonym: "textus adiposus albus" EXACT [] +synonym: "textus adiposus albus" RELATED LATIN [http://en.wikipedia.org/wiki/White_adipose_tissue] +synonym: "unilocular adipose tissue" EXACT [] +synonym: "white fat" EXACT [] +xref: BTO:0001456 +xref: CALOHA:TS-1119 +xref: EFO:0000813 +xref: EMAPA:35926 +xref: FMA:20117 +xref: http://en.wikipedia.org/wiki/White_adipose_tissue +xref: http://linkedlifedata.com/resource/umls/id/C1704223 +xref: MA:0000058 +xref: MAT:0000199 +xref: MIAA:0000199 +xref: NCIT:C33889 +xref: UMLS:C1704223 {source="ncithesaurus:White_Adipose_Tissue"} +is_a: UBERON:0001013 ! adipose tissue + +[Term] +id: UBERON:0001348 +name: brown adipose tissue +def: "A thermogenic form of adipose tissue that is composed of brown adipocytes[MP,modified]" [MGI:smb, MP:0011698] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "adipocytus multigutturalis" EXACT [] +synonym: "BAT" RELATED ABBREVIATION [http://en.wikipedia.org/wiki/Brown_adipose_tissue] +synonym: "brown fat" EXACT [] +synonym: "multilocular adipose tissue" EXACT [] +synonym: "textus adiposus fuscus" EXACT [] +synonym: "textus adiposus fuscus" RELATED LATIN [http://en.wikipedia.org/wiki/Brown_adipose_tissue] +xref: BTO:0000156 +xref: CALOHA:TS-0099 +xref: EFO:0000812 +xref: EMAPA:19209 +xref: FMA:20118 +xref: GAID:921 +xref: http://en.wikipedia.org/wiki/Brown_adipose_tissue +xref: http://linkedlifedata.com/resource/umls/id/C0006298 +xref: http://www.snomedbrowser.com/Codes/Details/15965003 +xref: MA:0000057 +xref: MAT:0000198 +xref: MESH:D002001 +xref: MIAA:0000198 +xref: NCIT:C32235 +xref: UMLS:C0006298 {source="ncithesaurus:Brown_Adipose_Tissue"} +is_a: UBERON:0001013 ! adipose tissue + +[Term] +id: UBERON:0001349 +name: externally connecting tube lumen +def: "Anatomical cavity that connects an organ cavity, organ cavity subdivision or cavity of body part subdivision to the exterior, completely or partially surrounded by organs or organ parts that are lined by epithelium. Examples: preputial cavity, vestibule of vagina.[FMA]" [FMA:20192] +subset: non_informative +synonym: "vestibule" RELATED [FMA:20192] +xref: FMA:20192 +is_a: UBERON:0002553 ! anatomical cavity +disjoint_from: UBERON:0005236 ! osseus labyrinth vestibule + +[Term] +id: UBERON:0001350 +name: coccyx +def: "A collection of caudal vertebrae in the coccygeal region that are fused and part of the bony pelvis." [https://orcid.org/0000-0002-6601-2165] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "coccygeal skeleton" EXACT [EHDAA2:0000259] +synonym: "coccygeal vertebrae I-IV" EXACT [FMA:20229] +synonym: "coccyx [coccygeal vertebrae I-IV]" EXACT [FMA:20229] +synonym: "coccyx [vertebrae coccygeae I-IV]" EXACT LATIN [FMA:20229, FMA:TA] +synonym: "fused caudal vertebrae" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "fused caudal vertebral column" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "os coccygis" EXACT LATIN [FMA:20229, FMA:TA] +synonym: "os coccygis" RELATED LATIN [http://en.wikipedia.org/wiki/Coccyx] +synonym: "tailbone" RELATED SENSU [FMA:20229] +xref: AAO:0000731 +xref: EHDAA2:0000259 +xref: FMA:20229 +xref: GAID:239 +xref: galen:Coccyx +xref: http://en.wikipedia.org/wiki/Coccyx +xref: http://linkedlifedata.com/resource/umls/id/C0009194 +xref: http://www.snomedbrowser.com/Codes/Details/182028002 +xref: MESH:D003050 +xref: NCIT:C12696 +xref: OpenCyc:Mx4rv1XqHJwpEbGdrcN5Y29ycA +xref: UMLS:C0009194 {source="ncithesaurus:Coccyx"} +is_a: UBERON:0004247 ! bone of dorsum +is_a: UBERON:0006076 ! caudal region of vertebral column +is_a: UBERON:0008001 {source="FMA"} ! irregular bone +intersection_of: UBERON:0006076 ! caudal region of vertebral column +intersection_of: has_fused_element UBERON:0001095 ! caudal vertebra +intersection_of: part_of UBERON:0001270 ! bony pelvis +relationship: develops_from UBERON:0007144 ! embryonic post-anal tail +relationship: has_fused_element UBERON:0001095 ! caudal vertebra +relationship: part_of UBERON:0001270 {source="FMA"} ! bony pelvis + +[Term] +id: UBERON:0001351 +name: lacrimal sac +def: "The upper dilated end of the nasolacrimal duct that is lodged in a deep groove formed by the lacrimal bone and frontal process of the maxilla; it connects the lacrimal canaliculi, which drain tears from the eye's surface, and the nasolacrimal duct, which conveys this fluid into the nasal cavity; like the nasolacrimal duct, the sac is lined by stratified columnar epithelium with mucus-secreting goblet cells, and is surrounded by connective tissue." [MGI:anna] +subset: pheno_slim +subset: uberon_slim +synonym: "lachrymal sac" EXACT [] +synonym: "lacrymal sac" EXACT [] +synonym: "saccus lacrimalis" EXACT LATIN [http://en.wikipedia.org/wiki/Lacrimal_sac] +xref: FMA:20289 +xref: http://linkedlifedata.com/resource/umls/id/C0229289 +xref: http://www.snomedbrowser.com/Codes/Details/362534009 +xref: Lacrimal:sac +xref: MA:0001298 +xref: NCIT:C32909 +xref: UMLS:C0229289 {source="ncithesaurus:Lacrimal_Sac"} +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0034944 ! zone of organ +relationship: part_of UBERON:0002392 ! nasolacrimal duct + +[Term] +id: UBERON:0001352 +name: external acoustic meatus +def: "A tube running from the outer ear to the middle ear. The human ear canal extends from the pinna to the eardrum and is about 26 mm in length and 7 mm in diameter." [http://en.wikipedia.org/wiki/External_acoustic_meatus] +subset: pheno_slim +subset: uberon_slim +synonym: "auditory canal" EXACT [] +synonym: "auditory meatus" RELATED [EHDAA2:0000460] +synonym: "ear canal" EXACT [http://en.wikipedia.org/wiki/Ear_canal] +synonym: "external acoustic tube" EXACT [FMA:61734] +synonym: "external auditory canal" EXACT [] +synonym: "external auditory meatus" RELATED [] +synonym: "external auditory tube" EXACT [FMA:61734] +xref: EHDAA2:0000460 +xref: EHDAA:8975 +xref: EMAPA:17588 +xref: EV:0100356 +xref: FMA:61734 +xref: GAID:864 +xref: galen:ExternalAuditoryMeatus +xref: http://en.wikipedia.org/wiki/External_acoustic_meatus +xref: http://linkedlifedata.com/resource/umls/id/C0013444 +xref: http://www.snomedbrowser.com/Codes/Details/181178004 +xref: MA:0000260 +xref: MESH:D004424 +xref: NCIT:C12498 +xref: OpenCyc:Mx4rvli-nZwpEbGdrcN5Y29ycA +xref: UMLS:C0013444 {source="ncithesaurus:External_Acoustic_Meatus"} +xref: VHOG:0000977 +is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: develops_from UBERON:0005872 {source="http://www.ncbi.nlm.nih.gov/pubmed/11237469"} ! 1st arch pharyngeal cleft +relationship: part_of UBERON:0001691 {source="FMA"} ! external ear +relationship: surrounded_by UBERON:0010065 {source="EHDAA2"} ! auditory meatus epithelium + +[Term] +id: UBERON:0001353 +name: anal region +def: "The anus and surrounding regions. Encompasses both internal and external regions, where present" [https://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "posterior" RELATED [] +synonym: "posterior end of organism" RELATED [] +xref: EFO:0000847 +xref: EHDAA2:0000122 +xref: EHDAA:2931 +xref: EMAPA:16831 +xref: http://linkedlifedata.com/resource/umls/id/C0230120 +xref: http://www.snomedbrowser.com/Codes/Details/362680001 +xref: MA:0000329 +xref: MAT:0000042 +xref: MIAA:0000042 +xref: NCIT:C32069 +xref: UMLS:C0230120 {source="ncithesaurus:Anal_Region"} +xref: VHOG:0000395 +xref: WBbt:0006919 +is_a: UBERON:0000475 ! organism subdivision +relationship: has_developmental_contribution_from UBERON:0000931 {evidence="cjm"} ! proctodeum + +[Term] +id: UBERON:0001354 +name: inferior epigastric artery +def: "The artery that arises from the external iliac artery and anastomoses with the superior epigastric artery." [http://en.wikipedia.org/wiki/Inferior_epigastric_artery, http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "arteria epigastrica inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_epigastric_artery] +xref: EMAPA:18751 +xref: FMA:20686 +xref: http://en.wikipedia.org/wiki/Inferior_epigastric_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226401 +xref: http://www.snomedbrowser.com/Codes/Details/244288009 +xref: MA:0001978 +xref: NCIT:C52861 +xref: OpenCyc:Mx4rdBvQc6gOEdudWQACs5b6Bw +xref: UMLS:C0226401 {source="ncithesaurus:Inferior_Epigastric_Artery"} +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0006349 ! epigastric artery +intersection_of: UBERON:0006349 ! epigastric artery +intersection_of: anastomoses_with UBERON:0007153 ! superior epigastric artery +intersection_of: branching_part_of UBERON:0001308 ! external iliac artery +relationship: anastomoses_with UBERON:0007153 ! superior epigastric artery +relationship: branching_part_of UBERON:0001308 ! external iliac artery +relationship: part_of UBERON:0001308 ! external iliac artery + +[Term] +id: UBERON:0001355 +name: deep femoral artery +def: "The profunda femoris artery (also known as the deep femoral artery, or the deep artery of the thigh) is a branch of the femoral artery that, as its name suggests, travels more deeply (posteriorly) than the rest of the femoral artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/Deep_femoral_artery] +subset: uberon_slim +synonym: "arteria profunda femoris" EXACT [] +synonym: "profunda femoris artery" EXACT [] +xref: EMAPA:37216 {source="MA:th"} +xref: FMA:20741 +xref: http://en.wikipedia.org/wiki/Deep_femoral_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226455 +xref: http://www.snomedbrowser.com/Codes/Details/181348000 +xref: MA:0002027 +xref: NCIT:C32436 +xref: UMLS:C0226455 {source="ncithesaurus:Deep_Femoral_Artery"} +is_a: UBERON:0004573 ! systemic artery +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0002060 ! femoral artery +intersection_of: part_of UBERON:0035551 ! deep vasculature +relationship: branching_part_of UBERON:0002060 ! femoral artery +relationship: part_of UBERON:0002060 ! femoral artery +relationship: part_of UBERON:0035551 ! deep vasculature + +[Term] +id: UBERON:0001356 +name: medial circumflex femoral artery +def: "The medial circumflex femoral artery (internal circumflex artery, medial femoral circumflex artery) is an artery in the upper thigh that helps supply blood to the neck of the femur. [WP,unvetted]." [http://en.wikipedia.org/wiki/Medial_circumflex_femoral_artery] +subset: uberon_slim +synonym: "arteria circumflexa femoris medialis" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_circumflex_femoral_artery] +synonym: "medial femoral circumflex artery" EXACT [] +xref: EMAPA:37670 {source="MA:th"} +xref: FMA:20799 +xref: http://en.wikipedia.org/wiki/Medial_circumflex_femoral_artery +xref: http://www.snomedbrowser.com/Codes/Details/244326008 +xref: MA:0001996 +is_a: UBERON:0004573 ! systemic artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0007119 ! neck of femur +relationship: branching_part_of UBERON:0001355 {source="FMA"} ! deep femoral artery +relationship: part_of UBERON:0001355 ! deep femoral artery +relationship: supplies UBERON:0007119 ! neck of femur + +[Term] +id: UBERON:0001357 +name: inferior rectal artery +def: "The inferior rectal artery (inferior hemorrhoidal artery) is an artery that supplies blood to the lower half of the anal canal. [WP,unvetted]." [http://en.wikipedia.org/wiki/Inferior_rectal_artery] +subset: uberon_slim +synonym: "arteria haemorrhoidalis inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_rectal_artery] +synonym: "arteria rectalis inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_rectal_artery] +synonym: "inferior haemorrhoidal artery" RELATED [http://en.wikipedia.org/wiki/Inferior_rectal_artery] +synonym: "inferior hemorrhoidal arteries" RELATED [http://en.wikipedia.org/wiki/Inferior_rectal_artery] +synonym: "inferior hemorrhoidal artery" RELATED [http://en.wikipedia.org/wiki/Inferior_rectal_artery] +synonym: "inferior hemorrhoidal branches" RELATED [http://en.wikipedia.org/wiki/Inferior_rectal_artery] +synonym: "inferior hemorrhoidal vessels" RELATED [http://en.wikipedia.org/wiki/Inferior_rectal_artery] +synonym: "inferior rectal arteries" RELATED [http://en.wikipedia.org/wiki/Inferior_rectal_artery] +xref: EMAPA:37087 {source="MA:th"} +xref: FMA:20824 +xref: http://en.wikipedia.org/wiki/Inferior_rectal_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226393 +xref: http://www.snomedbrowser.com/Codes/Details/244304007 +xref: MA:0001979 +xref: NCIT:C52938 +xref: UMLS:C0226393 {source="ncithesaurus:Inferior_Rectal_Artery"} +is_a: UBERON:0003835 ! abdominal segment blood vessel +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:0035039 ! rectal artery +relationship: in_lateral_side_of UBERON:0006867 {source="FMA-abduced-lr"} ! anal part of perineum +relationship: part_of UBERON:0000159 {source="FMA-abduced-lr"} ! anal canal +relationship: part_of UBERON:0006867 ! anal part of perineum +relationship: supplies UBERON:0000159 ! anal canal + +[Term] +id: UBERON:0001358 +name: perineal artery +def: "The perineal artery (superficial perineal artery) arises from the internal pudendal artery, and turns upward, crossing either over or under the Transversus perinæi superficialis, and runs forward, parallel to the pubic arch, in the interspace between the Bulbocavernosus and Ischiocavernosus, both of which it supplies, and finally divides into several posterior scrotal branches which are distributed to the skin and dartos tunic of the scrotum. As it crosses the Transversus perinæi superficialis it gives off the transverse perineal artery which runs transversely on the cutaneous surface of the muscle, and anastomoses with the corresponding vessel of the opposite side and with the perineal and inferior hemorrhoidal arteries. It supplies the Transversus perinæi superficialis and the structures between the anus and the urethral bulb. [WP,unvetted]." [http://en.wikipedia.org/wiki/Perineal_artery] +subset: uberon_slim +synonym: "arteria perinei" RELATED LATIN [http://en.wikipedia.org/wiki/Perineal_artery] +synonym: "superficial perineal artery" NARROW [http://en.wikipedia.org/wiki/Perineal_artery] +xref: EMAPA:37107 {source="MA:th"} +xref: FMA:20836 +xref: http://linkedlifedata.com/resource/umls/id/C0226394 +xref: http://www.snomedbrowser.com/Codes/Details/244303001 +xref: MA:0002017 +xref: NCIT:C52994 +xref: Perineal:artery +xref: UMLS:C0226394 {source="ncithesaurus:Perineal_Artery"} +is_a: UBERON:0003835 ! abdominal segment blood vessel +is_a: UBERON:0004573 ! systemic artery +relationship: branching_part_of UBERON:0007315 {source="FMA"} ! internal pudendal artery +relationship: part_of UBERON:0007315 ! internal pudendal artery + +[Term] +id: UBERON:0001359 +name: cerebrospinal fluid +def: "A clear, colorless, bodily fluid, that occupies the subarachnoid space and the ventricular system around and inside the brain and spinal cord." [http://en.wikipedia.org/wiki/Cerebrospinal_fluid] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "cerebral spinal fluid" EXACT [ZFA:0001626] +synonym: "CSF" EXACT [] +synonym: "liquor cerebrospinalis" RELATED [http://en.wikipedia.org/wiki/Cerebrospinal_fluid] +synonym: "spinal fluid" RELATED [BTO:0000237] +xref: BIRNLEX:1798 +xref: BTO:0000237 +xref: CALOHA:TS-0130 +xref: Cerebrospinal:fluid +xref: EFO:0000329 +xref: EHDAA2:0004441 +xref: ENVO:02000029 +xref: EV:0100311 +xref: FMA:20935 +xref: GAID:1181 +xref: http://linkedlifedata.com/resource/umls/id/C0007806 +xref: MA:0002503 +xref: MAT:0000499 +xref: MESH:A12.207.268 +xref: NCIT:C12692 +xref: TAO:0002184 +xref: UMLS:C0007806 {source="BIRNLEX:1798"} +xref: UMLS:C0007806 {source="ncithesaurus:Cerebrospinal_Fluid"} +xref: VHOG:0001278 +xref: ZFA:0001626 +is_a: UBERON:0007779 {source="Wikipedia"} ! transudate +relationship: develops_from UBERON:0002307 {notes="see notes", source="EHDAA2"} ! choroid plexus of lateral ventricle +relationship: filtered_through UBERON:0001886 ! choroid plexus +relationship: located_in UBERON:0005281 {source="EHDAA2"} ! ventricular system of central nervous system + +[Term] +id: UBERON:0001360 +name: deep circumflex iliac vein +def: "A vein that corresponds to the deep circumflex iliac artery and empties near or in a common trunk with the inferior epigastric vein into the external iliac vein; deep circumflex iliac vein." [http://medical-dictionary.thefreedictionary.com/circumflex+iliac+vein] +subset: uberon_slim +synonym: "circumflex iliac vein" EXACT [] +synonym: "deep iliac circumflex vein" EXACT [] +synonym: "iliac circumflex vein" EXACT [] +synonym: "vena circumflexa iliaca profunda" EXACT [] +synonym: "vena circumflexa ilium profunda" RELATED LATIN [http://en.wikipedia.org/wiki/Deep_circumflex_iliac_vein] +xref: EMAPA:37511 {source="MA:th"} +xref: FMA:21182 +xref: http://en.wikipedia.org/wiki/Deep_circumflex_iliac_vein +xref: http://www.snomedbrowser.com/Codes/Details/11653007 +xref: MA:0002099 +is_a: UBERON:0035552 ! deep vein + +[Term] +id: UBERON:0001361 +name: femoral vein +def: "In the human body, the femoral vein is a blood vessel that accompanies the femoral artery in the femoral sheath. It begins at the adductor canal (also known as Hunter's canal) and is a continuation of the popliteal vein. It ends at the inferior margin of the inguinal ligament, where it becomes the external iliac vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Femoral_vein] +subset: uberon_slim +synonym: "vena femoralis" RELATED LATIN [http://en.wikipedia.org/wiki/Femoral_vein] +xref: AAO:0010237 +xref: EMAPA:17876 +xref: Femoral:vein +xref: FMA:21185 +xref: GAID:533 +xref: galen:FemoralVein +xref: http://linkedlifedata.com/resource/umls/id/C0015809 +xref: http://www.snomedbrowser.com/Codes/Details/362071002 +xref: MA:0002118 +xref: MESH:D005268 +xref: NCIT:C12716 +xref: OpenCyc:Mx4rwFXTLJwpEbGdrcN5Y29ycA +xref: UMLS:C0015809 {source="ncithesaurus:Femoral_Vein"} +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003516 ! hindlimb blood vessel + +[Term] +id: UBERON:0001362 +name: perineal vein +xref: EMAPA:37179 {source="MA:th"} +xref: FMA:21246 +xref: http://www.snomedbrowser.com/Codes/Details/312507009 +xref: MA:0002193 +is_a: UBERON:0001638 ! vein +relationship: part_of UBERON:0001317 ! internal iliac vein +relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein + +[Term] +id: UBERON:0001363 +name: great saphenous vein +def: "The great saphenous vein (GSV), also greater saphenous vein, is the large (subcutaneous) superficial vein of the leg and thigh. The terms 'safaina' (Greek) and 'el safin' (Arabic) have both been claimed as the origin for the word 'saphenous'. [WP,unvetted]." [http://en.wikipedia.org/wiki/Great_saphenous_vein] +subset: uberon_slim +synonym: "greater saphenous vein" EXACT [] +synonym: "large saphenous vein" RELATED [BTO:0003271] +synonym: "long saphenous vein" RELATED [] +synonym: "vena saphena magna" RELATED LATIN [http://en.wikipedia.org/wiki/Great_saphenous_vein] +xref: BTO:0003271 +xref: EMAPA:37147 {source="MA:th"} +xref: FMA:21376 +xref: galen:GreaterSaphenousVein +xref: galen:GreatSaphenousVein +xref: http://en.wikipedia.org/wiki/Great_saphenous_vein +xref: http://linkedlifedata.com/resource/umls/id/C0392907 +xref: http://www.snomedbrowser.com/Codes/Details/181402008 +xref: MA:0002216 +xref: NCIT:C33004 +xref: UMLS:C0392907 {source="ncithesaurus:Long_Saphenous_Vein"} +is_a: UBERON:0007318 ! saphenous vein +relationship: part_of UBERON:0001361 ! femoral vein +relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein + +[Term] +id: UBERON:0001364 +name: obsolete circumpennate +synonym: "radial" EXACT [] +synonym: "radialis" EXACT LATIN [FMA:21431, FMA:TA] +synonym: "radials" RELATED [] +xref: OpenCyc:Mx4rvVjBSZwpEbGdrcN5Y29ycA +is_obsolete: true +consider: FMA:21431 +consider: ZFA:0000271 + +[Term] +id: UBERON:0001365 +name: sacro-iliac joint +def: "The joint in the bony pelvis between the sacrum and the ilium of the pelvis, which are joined by strong ligaments." [http://en.wikipedia.org/wiki/Sacroiliac_joint] +subset: pheno_slim +subset: uberon_slim +synonym: "articulatio sacro-iliaca" EXACT [] +synonym: "sacroiliac joint" EXACT [] +xref: EMAPA:19300 +xref: FMA:21440 +xref: GAID:268 +xref: http://linkedlifedata.com/resource/umls/id/C0036036 +xref: http://www.snomedbrowser.com/Codes/Details/182199004 +xref: MA:0001506 +xref: MESH:D012446 +xref: NCIT:C33507 +xref: Sacroiliac:joint +xref: UMLS:C0036036 {source="ncithesaurus:Sacroiliac_Joint"} +is_a: UBERON:0011107 {source="FMA"} ! synovial joint of pelvic girdle +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001273 ! ilium +intersection_of: connects UBERON:0003690 ! fused sacrum +relationship: connects UBERON:0001273 ! ilium +relationship: connects UBERON:0003690 ! fused sacrum +relationship: in_lateral_side_of UBERON:0002355 ! pelvic region of trunk +relationship: part_of UBERON:0001270 ! bony pelvis + +[Term] +id: UBERON:0001366 +name: parietal peritoneum +alt_id: UBERON:0004459 +def: "The outer layer of peritoneum that is attached to the abdominal and pelvic walls." [http://en.wikipedia.org/wiki/Peritoneum#Types, http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +subset: vertebrate_core +synonym: "parietal serous membrane of peritoneum" EXACT [UBERON:cjm] +synonym: "peritoneal cavity lining" RELATED [] +xref: AAO:0010816 +xref: EMAPA:16591 +xref: FMA:21451 +xref: http://www.snomedbrowser.com/Codes/Details/362700006 +xref: Parietal:peritoneum +xref: TAO:0005131 +xref: VHOG:0001527 +xref: ZFA:0005131 +is_a: UBERON:0022351 ! parietal serous membrane +intersection_of: UBERON:0022351 ! parietal serous membrane +intersection_of: part_of UBERON:0002358 ! peritoneum +relationship: attaches_to UBERON:0003697 ! abdominal wall +relationship: part_of UBERON:0002358 ! peritoneum + +[Term] +id: UBERON:0001367 +name: external anal sphincter +def: "The Sphincter ani externus (external anal sphincter) is a flat plane of muscular fibers, elliptical in shape and intimately adherent to the integument surrounding the margin of the anus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Sphincter_ani_externus_muscle] +subset: pheno_slim +subset: uberon_slim +synonym: "external sphincter ani" EXACT [] +synonym: "musculus sphincter ani externus" EXACT [] +synonym: "sphincter ani externus" RELATED LATIN [] +xref: EMAPA:18265 +xref: FMA:21930 +xref: http://en.wikipedia.org/wiki/Sphincter_ani_externus_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224395 +xref: http://www.snomedbrowser.com/Codes/Details/244969008 +xref: MA:0001531 +xref: NCIT:C32548 +xref: UMLS:C0224395 {source="ncithesaurus:External_Anal_Sphincter"} +is_a: UBERON:0003898 ! skeletal muscle tissue of trunk +is_a: UBERON:0004832 {source="MA"} ! anal region skeletal muscle +relationship: part_of UBERON:0006867 {source="FMA"} ! anal part of perineum +relationship: surrounds UBERON:0001245 ! anus + +[Term] +id: UBERON:0001368 +name: obturator externus +def: "An adductor muscle that attaches to the femur and the pelvis. In humans, the obturator externus muscle is a flat, triangular muscle, which covers the outer surface of the anterior wall of the pelvis. It is sometimes considered part of the medial compartment of thigh, and sometimes considered part of the gluteal region. [WP,generalized]." [http://en.wikipedia.org/wiki/Obturator_externus_muscle] +subset: uberon_slim +synonym: "external obturator" EXACT [] +synonym: "external obturator" RELATED [http://en.wikipedia.org/wiki/Obturator_externus_muscle] +synonym: "external obturatus" RELATED [http://en.wikipedia.org/wiki/Obturator_externus_muscle] +synonym: "externus obturator" RELATED [http://en.wikipedia.org/wiki/Obturator_externus_muscle] +synonym: "M. obturator externus" EXACT [AAO:0010043] +synonym: "musculus obturatorius externus" RELATED LATIN [http://en.wikipedia.org/wiki/Obturator_externus_muscle] +synonym: "obturator externus" RELATED [http://en.wikipedia.org/wiki/Obturator_externus_muscle] +synonym: "obturatorius externus" RELATED [http://en.wikipedia.org/wiki/Obturator_externus_muscle] +synonym: "obturatus externus" RELATED [http://en.wikipedia.org/wiki/Obturator_externus_muscle] +xref: AAO:0010043 +xref: EMAPA:36236 +xref: FMA:22299 +xref: http://en.wikipedia.org/wiki/Obturator_externus_muscle +xref: http://linkedlifedata.com/resource/umls/id/C1518528 +xref: http://www.snomedbrowser.com/Codes/Details/245026009 +xref: MA:0002347 +xref: NCIT:C33191 +xref: UMLS:C1518528 {source="ncithesaurus:Obturator_Externus_Muscle"} +is_a: UBERON:0011043 {source="FMA"} ! obturator muscle +is_a: UBERON:0011144 {source="Wikipedia"} ! adductor muscle of hip +relationship: attaches_to UBERON:0002503 {source="FMA"} ! greater trochanter +relationship: has_muscle_insertion UBERON:0000981 {notes="trochanteric fossa of femur", source="dbpedia"} ! femur +relationship: has_muscle_origin UBERON:0006803 {notes="obturator foramen and obturatory membrane", source="dbpedia"} ! obturator foramen + +[Term] +id: UBERON:0001369 +name: iliacus muscle +def: "The iliacus is a flat, triangular muscle, which fills the iliac fossa. [WP,unvetted]." [http://en.wikipedia.org/wiki/Iliacus_muscle] +subset: uberon_slim +synonym: "anterior muscle of pelvic girdle" EXACT [] +synonym: "iliacus" EXACT [MA:0002318] +synonym: "iliacus muscle" RELATED [http://en.wikipedia.org/wiki/Iliacus_muscle] +synonym: "musculus iliacus" RELATED LATIN [http://en.wikipedia.org/wiki/Iliacus_muscle] +xref: EMAPA:19164 +xref: FMA:22310 +xref: http://linkedlifedata.com/resource/umls/id/C0224418 +xref: http://www.snomedbrowser.com/Codes/Details/244956009 +xref: Iliacus:muscle +xref: MA:0002318 +xref: NCIT:C32762 +xref: UMLS:C0224418 {source="ncithesaurus:Iliacus"} +is_a: UBERON:0001497 {source="FMA"} ! muscle of pelvic girdle +relationship: has_muscle_antagonist UBERON:0001370 {source="dbpedia"} ! gluteus maximus +relationship: has_muscle_insertion UBERON:0002504 {notes="lesser trochanter of femur", source="dbpedia"} ! lesser trochanter +relationship: has_muscle_origin UBERON:0011015 {source="dbpedia"} ! iliac fossa +relationship: innervated_by UBERON:0001267 {source="dbpedia"} ! femoral nerve + +[Term] +id: UBERON:0001370 +name: gluteus maximus +def: "The largest and most superficial of the three gluteal muscles [WP,unvetted]." [http://en.wikipedia.org/wiki/Gluteus_maximus_muscle] +subset: uberon_slim +synonym: "glutaeus maximus muscle" RELATED [http://en.wikipedia.org/wiki/Gluteus_maximus_muscle] +synonym: "gluteus maximus muscle" EXACT [http://en.wikipedia.org/wiki/Gluteus_maximus_muscle] +synonym: "gluteus superficialis" RELATED [] +synonym: "glutæus maximus" EXACT [] +synonym: "m.gluteus maximus" EXACT [] +synonym: "musculus gluteus maximus" RELATED LATIN [http://en.wikipedia.org/wiki/Gluteus_maximus_muscle] +xref: EMAPA:18527 +xref: FMA:22314 +xref: http://en.wikipedia.org/wiki/Gluteus_maximus_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224424 +xref: http://www.snomedbrowser.com/Codes/Details/181674001 +xref: MA:0002309 +xref: NCIT:C52560 +xref: OpenCyc:Mx4rvVjdMZwpEbGdrcN5Y29ycA +xref: UMLS:C0224424 {source="ncithesaurus:Gluteus_Maximus"} +is_a: UBERON:0002000 ! gluteal muscle +is_a: UBERON:0003897 ! axial muscle +is_a: UBERON:0011645 ! iliofemoralis muscle +relationship: has_muscle_antagonist UBERON:0001298 {source="dbpedia"} ! psoas major muscle +relationship: has_muscle_antagonist UBERON:0001369 {source="dbpedia"} ! iliacus muscle +relationship: has_muscle_antagonist UBERON:0001372 {source="dbpedia"} ! psoas minor muscle +relationship: has_muscle_origin UBERON:0003690 {notes="Gluteal surface of ilium lumbar fascia sacrum sacrotuberous ligament", source="dbpedia"} ! fused sacrum + +[Term] +id: UBERON:0001371 +name: gluteus medius +def: "One of three gluteal muscles, is a broad, thick, radiating muscle, situated on the outer surface of the pelvis. Its posterior third is covered by the gluteus maximus, its anterior two-thirds by the gluteal aponeurosis, which separates it from the superficial fascia and integument. [WP,unvetted]." [http://en.wikipedia.org/wiki/Gluteus_medius_muscle] +subset: uberon_slim +synonym: "gluteus medius muscle" RELATED [http://en.wikipedia.org/wiki/Gluteus_medius_muscle] +synonym: "musculus gluteus medius" RELATED [http://en.wikipedia.org/wiki/Gluteus_medius_muscle] +synonym: "musculus gluteus medius" RELATED LATIN [http://en.wikipedia.org/wiki/Gluteus_medius_muscle] +xref: EMAPA:19163 +xref: FMA:22315 +xref: galen:GluteusMedius +xref: http://en.wikipedia.org/wiki/Gluteus_medius_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224425 +xref: http://www.snomedbrowser.com/Codes/Details/181675000 +xref: MA:0002310 +xref: NCIT:C52933 +xref: UMLS:C0224425 {source="ncithesaurus:Gluteus_Medius"} +is_a: UBERON:0002000 ! gluteal muscle +relationship: attaches_to UBERON:0002503 {source="FMA"} ! greater trochanter +relationship: has_muscle_insertion UBERON:0002503 {notes="Greater trochanter of the femur", source="dbpedia"} ! greater trochanter +relationship: has_muscle_origin UBERON:0001273 {notes="Gluteal surface of ilium under gluteus maximus", source="dbpedia"} ! ilium + +[Term] +id: UBERON:0001372 +name: psoas minor muscle +def: "The psoas minor is a long, slender skeletal muscle that, when present, is placed in front of the psoas major muscle. [WP,unvetted]." [http://en.wikipedia.org/wiki/Psoas_minor_muscle] +comment: Human variation notes: It is absent in 40% of individuals. +subset: uberon_slim +synonym: "m. psoas minor" RELATED LATIN [http://en.wikipedia.org/wiki/Psoas_minor_muscle] +synonym: "psoas minor" EXACT [MA:0002359] +xref: BTO:0001878 +xref: EMAPA:18170 +xref: FMA:22350 +xref: http://en.wikipedia.org/wiki/Psoas_minor_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224420 +xref: http://www.snomedbrowser.com/Codes/Details/244954007 +xref: MA:0002359 +xref: NCIT:C33421 +xref: UMLS:C0224420 {source="ncithesaurus:Psoas_Minor"} +is_a: UBERON:0008450 {source="MA"} ! psoas muscle +relationship: has_muscle_insertion UBERON:0001275 {notes="pectineal line", source="dbpedia"} ! pubis +relationship: has_muscle_origin UBERON:0001075 {notes="Lateral surface bodies of T12 and L1 vertebrae and intervening intervertebral disc", source="dbpedia"} ! bony vertebral centrum + +[Term] +id: UBERON:0001373 +name: sartorius muscle +def: "The Sartorius muscle - the longest muscle in the human body - is a long thin muscle that runs down the length of the thigh. Its upper portion forms the lateral border of the femoral triangle." [http://en.wikipedia.org/wiki/Sartorius_muscle] +subset: uberon_slim +synonym: "ambliens" RELATED SENSU [] +synonym: "M. sartorius" RELATED [] +synonym: "musculus sartorius" RELATED LATIN [http://en.wikipedia.org/wiki/Sartorius_muscle] +synonym: "sartorius" EXACT [MA:0002368] +xref: BTO:0001215 +xref: EHDAA2:0001776 +xref: EHDAA:10583 +xref: EMAPA:37693 {source="MA:th"} +xref: FMA:22353 +xref: galen:Sartorius +xref: http://linkedlifedata.com/resource/umls/id/C0224434 +xref: http://www.snomedbrowser.com/Codes/Details/181683006 +xref: MA:0002368 +xref: NCIT:C33515 +xref: Sartorius:muscle +xref: UMLS:C0224434 {source="ncithesaurus:Sartorius_Muscle"} +xref: VHOG:0001192 +is_a: UBERON:0001630 ! muscle organ +relationship: has_muscle_insertion UBERON:0008977 {notes="anteromedial surface of the upper tibia in the pes anserinus", source="dbpedia"} ! pes anserinus of tibia +relationship: has_muscle_origin UBERON:0001273 ! ilium +relationship: innervated_by UBERON:0001267 {notes="femoral nerve", source="dbpedia"} ! femoral nerve + +[Term] +id: UBERON:0001374 +name: biceps femoris +def: "The biceps femoris is a muscle of the posterior (the back) thigh. As its name implies, it has two parts, one of which (the long head) forms part of the hamstrings muscle group. [WP,unvetted]." [http://en.wikipedia.org/wiki/Biceps_femoris_muscle] +subset: efo_slim +subset: uberon_slim +synonym: "biceps femoris muscle" EXACT [BTO:0003418] +synonym: "musculus biceps femoris" RELATED LATIN [http://en.wikipedia.org/wiki/Biceps_femoris_muscle] +xref: BTO:0003418 +xref: EFO:0001418 +xref: EMAPA:35170 +xref: FMA:22356 +xref: galen:BicepsFemoris +xref: http://en.wikipedia.org/wiki/Biceps_femoris_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224449 +xref: http://www.snomedbrowser.com/Codes/Details/181672002 +xref: MA:0002270 +xref: NCIT:C53147 +xref: UMLS:C0224449 {source="ncithesaurus:Biceps_Femoris"} +is_a: UBERON:0002463 {source="cjm"} ! muscle of posterior compartment of hindlimb stylopod +relationship: has_muscle_insertion UBERON:0008775 {notes="the head of the fibula which articulates with the back of the lateral tibial condyle", source="dbpedia"} ! proximal epiphysis of fibula +relationship: has_muscle_insertion UBERON:0009989 {notes="the head of the fibula which articulates with the back of the lateral tibial condyle", source="dbpedia"} ! condyle of tibia +relationship: has_muscle_origin UBERON:0000981 {source="dbpedia"} ! femur +relationship: innervated_by UBERON:0001323 {notes="long head: tibial nerveshort head: common peroneal nerve", source="dbpedia"} ! tibial nerve + +[Term] +id: UBERON:0001375 +name: semitendinosus +def: "The semitendinosus is a muscle in the back of the thigh; it is one of the hamstrings. [WP,unvetted]." [http://en.wikipedia.org/wiki/Semitendinosus_muscle] +subset: uberon_slim +synonym: "musculus semitendinosus" RELATED [BTO:0001236] +synonym: "musculus semitendinosus" RELATED LATIN [http://en.wikipedia.org/wiki/Semitendinosus_muscle] +synonym: "semitendinosus muscle" EXACT [] +xref: BTO:0001236 +xref: EMAPA:35762 +xref: FMA:22357 +xref: galen:Semitendinosus +xref: http://linkedlifedata.com/resource/umls/id/C0224453 +xref: http://www.snomedbrowser.com/Codes/Details/181685004 +xref: MA:0002375 +xref: NCIT:C53176 +xref: Semitendinosus:muscle +xref: UMLS:C0224453 {source="ncithesaurus:Semitendinosus"} +is_a: UBERON:0002463 {source="cjm"} ! muscle of posterior compartment of hindlimb stylopod +relationship: has_muscle_insertion UBERON:0008977 {source="dbpedia"} ! pes anserinus of tibia + +[Term] +id: UBERON:0001376 +name: tensor fasciae latae muscle +def: "The tensor fasciae latae or tensor fasciæ latæ is a muscle of the thigh. [WP,unvetted]." [http://en.wikipedia.org/wiki/Tensor_fasciae_latae_muscle] +subset: uberon_slim +synonym: "musculus tensor fasciae latae" EXACT LATIN [http://en.wikipedia.org/wiki/Tensor_fasciae_latae_muscle] +synonym: "musculus tensor fasciae latae" EXACT LATIN [FMA:22423, FMA:TA] +synonym: "tensor fasciae lata" EXACT [MA:0002391] +synonym: "tensor fasciae lata muscle" EXACT [] +synonym: "tensor fasciae latae" EXACT [FMA:22423] +synonym: "tensor of fascia lata" EXACT [] +xref: EMAPA:35855 +xref: FMA:22423 +xref: http://en.wikipedia.org/wiki/Tensor_fasciae_latae_muscle +xref: http://linkedlifedata.com/resource/umls/id/C1384497 +xref: http://www.snomedbrowser.com/Codes/Details/181671009 +xref: MA:0002391 +xref: NCIT:C53072 +xref: UMLS:C1384497 {source="ncithesaurus:Tensor_Fasciae_Lata"} +is_a: UBERON:0002000 ! gluteal muscle +relationship: has_muscle_origin UBERON:0010746 ! iliac blade + +[Term] +id: UBERON:0001377 +name: quadriceps femoris +def: "One of the muscles belong to the group consisting of the rectus femoris and the three heads of the vastus (lateralis, medialis, intermedius)." [ISBN:0073040584] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "musculus quadriceps femoris" RELATED LATIN [http://en.wikipedia.org/wiki/Quadriceps_femoris_muscle] +synonym: "musculus quadriceps femoris" RELATED [BTO:0001149] +synonym: "quadricep muscle" RELATED [BTO:0001149] +synonym: "quadriceps" EXACT [] +synonym: "quadriceps femoris muscle" EXACT [] +synonym: "quadriceps muscle" RELATED [BTO:0001149] +synonym: "quadriceps muscle of the thigh" RELATED [BTO:0001149] +synonym: "quadriceps muscle of thigh" RELATED [BTO:0001149] +xref: BTO:0001149 +xref: EFO:0001938 +xref: EHDAA2:0001583 +xref: EHDAA:8299 +xref: EMAPA:19146 +xref: FMA:22428 +xref: galen:QuadricepsFemoris +xref: http://en.wikipedia.org/wiki/Quadriceps_femoris_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224440 +xref: http://www.snomedbrowser.com/Codes/Details/181669009 +xref: MA:0002363 +xref: NCIT:C33441 +xref: OpenCyc:Mx4rvVjd-JwpEbGdrcN5Y29ycA +xref: UMLS:C0224440 {source="ncithesaurus:Quadriceps_Muscle_of_the_Thigh"} +xref: VHOG:0000828 +is_a: UBERON:0003663 ! hindlimb muscle +union_of: UBERON:0001378 ! rectus femoris +union_of: UBERON:0001379 ! vastus lateralis +union_of: UBERON:0001380 ! vastus medialis +union_of: UBERON:0014847 ! vastus intermedius +relationship: has_muscle_insertion UBERON:0000979 {notes="tibial tuberosity", source="dbpedia"} ! tibia +relationship: has_muscle_origin UBERON:0001378 {notes="combined rectus femoris and vastus muscles", source="dbpedia"} ! rectus femoris +relationship: innervated_by UBERON:0001267 {source="dbpedia"} ! femoral nerve + +[Term] +id: UBERON:0001378 +name: rectus femoris +def: "The Rectus femoris muscle is one of the four quadriceps muscles of the human body. (The others are the vastus medialis, the vastus intermedius, and the vastus lateralis. All four combine to form the quadriceps tendon, which inserts into the patella and continues as the patellar ligament. ) The Rectus femoris is situated in the middle of the front of the thigh; it is fusiform in shape, and its superficial fibers are arranged in a bipenniform manner, the deep fibers running straight down to the deep aponeurosis. [WP,unvetted]." [http://en.wikipedia.org/wiki/Rectus_femoris_muscle] +subset: uberon_slim +synonym: "musculus rectos femoris" EXACT [] +xref: BTO:0001564 +xref: EMAPA:36266 +xref: FMA:22430 +xref: http://en.wikipedia.org/wiki/Rectus_femoris_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0584894 +xref: http://www.snomedbrowser.com/Codes/Details/181679006 +xref: MA:0002365 +xref: NCIT:C53175 +xref: UMLS:C0584894 {source="ncithesaurus:Rectus_Femoris"} +is_a: UBERON:0001377 ! quadriceps femoris +relationship: has_muscle_antagonist UBERON:0002463 {source="dbpedia"} ! muscle of posterior compartment of hindlimb stylopod +relationship: has_muscle_origin UBERON:0001269 {notes="anterior inferior iliac spine and the exterior surface of the bony ridge which forms the iliac portion of the acetabulum", source="dbpedia"} ! acetabular part of hip bone + +[Term] +id: UBERON:0001379 +name: vastus lateralis +def: "The Vastus lateralis (Vastus externus) is the largest part of the Quadriceps femoris. It arises by a broad aponeurosis, which is attached to the upper part of the intertrochanteric line, to the anterior and inferior borders of the greater trochanter, to the lateral lip of the gluteal tuberosity, and to the upper half of the lateral lip of the linea aspera; this aponeurosis covers the upper three-fourths of the muscle, and from its deep surface many fibers take origin. A few additional fibers arise from the tendon of the Glutæus maximus, and from the lateral intermuscular septum between the Vastus lateralis and short head of the Biceps femoris. The fibers form a large fleshy mass, which is attached to a strong aponeurosis, placed on the deep surface of the lower part of the muscle: this aponeurosis becomes contracted and thickened into a flat tendon inserted into the lateral border of the patella, blending with the Quadriceps femoris tendon, and giving an expansion to the capsule of the knee-joint. [WP,unvetted]." [http://en.wikipedia.org/wiki/Vastus_lateralis] +subset: efo_slim +subset: uberon_slim +synonym: "lateralis" BROAD [] +synonym: "vastus externus" RELATED [BTO:0001563] +synonym: "vastus lateralis muscle" EXACT [] +xref: BTO:0001563 +xref: EFO:0001937 +xref: EMAPA:36244 +xref: FMA:22431 +xref: galen:VastusLateralis +xref: http://linkedlifedata.com/resource/umls/id/C0224444 +xref: MA:0002402 +xref: NCIT:C53073 +xref: UMLS:C0224444 {source="ncithesaurus:Vastus_Lateralis"} +xref: Vastus:lateralis +is_a: UBERON:0001377 ! quadriceps femoris + +[Term] +id: UBERON:0001380 +name: vastus medialis +def: "The vastus medialis, often called the 'teardrop' muscle, is a medially located muscle of the quadriceps. [WP,unvetted]." [http://en.wikipedia.org/wiki/Vastus_medialis] +subset: uberon_slim +synonym: "medialis" BROAD [] +synonym: "vastus internus" RELATED [BTO:0004913] +synonym: "vastus medialis muscle" EXACT [] +xref: BTO:0004913 +xref: EMAPA:36245 +xref: FMA:22432 +xref: galen:VastusMedialis +xref: MA:0002403 +xref: NCIT:C117736 +xref: Vastus:medialis +is_a: UBERON:0001377 ! quadriceps femoris +relationship: has_muscle_insertion UBERON:0002446 {source="dbpedia"} ! patella +relationship: has_muscle_origin UBERON:0000981 {source="dbpedia"} ! femur + +[Term] +id: UBERON:0001381 +name: semimembranosus muscle +def: "The semimembranosus is a muscle in the back of the thigh. It is the most medial of the three hamstring muscles. [WP,unvetted]." [http://en.wikipedia.org/wiki/Semimembranosus] +subset: uberon_slim +synonym: "musculus semimembranosus" EXACT LATIN [BTO:0003177] +synonym: "semimembranosus" EXACT [MA:0002371] +xref: BTO:0003177 +xref: EMAPA:36242 +xref: FMA:22438 +xref: galen:Semimembranosus +xref: http://en.wikipedia.org/wiki/Semimembranosus +xref: http://linkedlifedata.com/resource/umls/id/C0224452 +xref: MA:0002371 +xref: NCIT:C52987 +xref: UMLS:C0224452 {source="ncithesaurus:Semimembranosus"} +is_a: UBERON:0002463 {source="cjm"} ! muscle of posterior compartment of hindlimb stylopod + +[Term] +id: UBERON:0001382 +name: pectineus muscle +def: "An adductor muscle that attaches to the pelvic bone and the femur. In humans, The pectineus muscle is a flat, quadrangular muscle, situated at the anterior part of the upper and medial aspect of the thigh. It can be classified in the medial compartment of thigh (when the function is emphasized) or the anterior compartment of thigh (when the nerve is emphasized). [WP,generalized]." [http://en.wikipedia.org/wiki/Pectineus_muscle] +subset: uberon_slim +synonym: "M. pectineus" EXACT [AAO:0010036] +synonym: "musculus pectineus" RELATED LATIN [http://en.wikipedia.org/wiki/Pectineus_muscle] +synonym: "pectineus" EXACT [] +xref: AAO:0010036 +xref: EMAPA:36238 +xref: FMA:22440 +xref: http://linkedlifedata.com/resource/umls/id/C0224447 +xref: http://www.snomedbrowser.com/Codes/Details/245017006 +xref: MA:0002353 +xref: NCIT:C52978 +xref: Pectineus:muscle +xref: UMLS:C0224447 {source="ncithesaurus:Pectineus"} +is_a: UBERON:0004252 ! hindlimb stylopod muscle +is_a: UBERON:0011144 {source="Wikipedia"} ! adductor muscle of hip +relationship: has_muscle_insertion UBERON:0000981 {source="dbpedia"} ! femur +relationship: has_muscle_origin UBERON:0001275 {notes="pectineal line - superior pubic ramus", source="dbpedia"} ! pubis +relationship: innervated_by UBERON:0001267 {notes="Femoral nerve sometimes obturator nerve", source="dbpedia"} ! femoral nerve + +[Term] +id: UBERON:0001383 +name: muscle of leg +alt_id: UBERON:0003270 +def: "A muscle that is part of the region of the hindlimb between the pelvis and ankle." [http://en.wikipedia.org/wiki/Leg_muscle, https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "leg muscle" EXACT [] +synonym: "leg muscle organ" EXACT [OBOL:automatic] +synonym: "leg skeletal muscle" EXACT [OBOL:automatic] +synonym: "leg skeletal muscle tissue" EXACT [OBOL:automatic] +synonym: "muscle of hindlimb zeugopod or stylopod" EXACT [https://orcid.org/0000-0002-6601-2165, OBOL:automatic] +synonym: "muscle of thigh or crus" EXACT [https://orcid.org/0000-0002-6601-2165, OBOL:automatic] +synonym: "muscle of upper or lower hindlimb segment" EXACT [https://orcid.org/0000-0002-6601-2165, OBOL:automatic] +synonym: "muscle of upper/lower leg" EXACT [] +synonym: "muscle organ of leg" EXACT [OBOL:automatic] +synonym: "skeletal muscle of leg" EXACT [OBOL:automatic] +xref: BTO:0000722 +xref: EHDAA:8291 +xref: EMAPA:19144 +xref: EMAPA:19318 +xref: Leg:muscle +xref: MA:0000672 +xref: RETIRED_EHDAA2:0000974 +is_a: UBERON:0003663 ! hindlimb muscle +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0000978 ! leg +relationship: part_of UBERON:0004466 {source="prolog"} ! musculature of leg + +[Term] +id: UBERON:0001384 +name: primary motor cortex +def: "The part of the cerebral cortex that receives projections from the motor thalamus and which projects to motor neurons in the brainstem and spinal cord. The motor cortex corresponds to Brodmann's area 4 (MM). The primary motor cortex, or M1, is located on the precentral gyrus and on the anterior paracentral lobule on the medial surface of the brain. Of the three motor cortex areas, stimulation of the primary motor cortex requires the least amount of electrical current to elicit a movement. http://neuroscience.uth.tmc.edu/s3/chapter03.html" [NLX:143555] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "excitable area" RELATED [BTO:0004348] +synonym: "gyrus precentralis" RELATED LATIN [http://en.wikipedia.org/wiki/Primary_motor_cortex] +synonym: "motor area" RELATED [BTO:0004348] +synonym: "motor cortex" EXACT [FMA:224854] +synonym: "prefrontal gyrus" RELATED [http://en.wikipedia.org/wiki/Primary_motor_cortex, MP:0000798] +synonym: "primary motor area" RELATED [BAMS:MOp] +synonym: "Rolando's area" RELATED [BTO:0004348] +synonym: "somatic motor areas" RELATED [BAMS:MO] +synonym: "somatomotor areas" RELATED [BAMS:MO] +xref: BAMS:M1 +xref: BAMS:MO +xref: BAMS:MOp +xref: BM:Tel-Cx-M1 +xref: BTO:0004348 +xref: DHBA:10162 +xref: EFO:0002472 +xref: EMAPA:35704 +xref: FMA:224854 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1910 +xref: http://en.wikipedia.org/wiki/Primary_motor_cortex +xref: http://linkedlifedata.com/resource/umls/id/C0026607 +xref: http://www.snomedbrowser.com/Codes/Details/11931008 +xref: MA:0000907 +xref: MBA:985 +xref: MESH:A08.186.211.730.885.213.270.548 +xref: NCIT:C97339 +xref: NLX:143555 +xref: UMLS:C0026607 {source="ncithesaurus:Primary_Motor_Cortex"} +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0000956 ! cerebral cortex +relationship: contributes_to_morphology_of UBERON:0001870 ! frontal cortex +relationship: part_of UBERON:0001870 {source="MA", source="Wikipedia"} ! frontal cortex + +[Term] +id: UBERON:0001385 +name: tibialis anterior +def: "A muscle that originates in the upper two-thirds of the lateral surface of the tibia and inserts into the medial cuneiform and first metatarsal bones of the foot. Its acts to invert the foot. It is situated on the lateral side of the tibia; it is thick and fleshy above, tendinous below. This muscle overlaps the anterior tibial vessels and deep peroneal nerve in the upper part of the leg. [WP,unvetted]. The M. tibialis cranialis is a muscle that flexes the tarsometatarsus. It originates on the craniodistal aspect of the femur and proximal tibiotarsus and inserts on the cranial surface of the tarsometarsus[EvoWiki]." [http://en.wikipedia.org/wiki/Tibialis_anterior_muscle, http://evolutionwiki.org/wiki/M._tibialis_cranialis] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "anterior tibialis" RELATED [BTO:0001382] +synonym: "ibialis anticus" RELATED [BTO:0001382] +synonym: "musculus tibialis anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Tibialis_anterior_muscle] +synonym: "tibialis anterior muscle" EXACT [BTO:0001382] +synonym: "tibialis cranialis" EXACT [MA:0002395] +synonym: "tibilais cranialis" EXACT [] +xref: BTO:0001382 +xref: EFO:0001385 +xref: EMAPA:35866 +xref: FMA:22532 +xref: galen:TibialisAnterior +xref: http://en.wikipedia.org/wiki/Tibialis_anterior_muscle +xref: http://linkedlifedata.com/resource/umls/id/C1710423 +xref: http://www.snomedbrowser.com/Codes/Details/181696007 +xref: MA:0002395 +xref: NCIT:C53079 +xref: UMLS:C1710423 {source="ncithesaurus:Tibialis_Cranialis"} +is_a: UBERON:0008230 ! tibialis +relationship: has_muscle_antagonist UBERON:0001388 {source="dbpedia"} ! gastrocnemius +relationship: has_muscle_antagonist UBERON:0001389 {source="dbpedia"} ! soleus muscle +relationship: has_muscle_antagonist UBERON:0001667 {source="dbpedia"} ! tibialis posterior +relationship: has_muscle_insertion UBERON:0001448 {notes="medial cuneiform and first metatarsal bones of the foot", source="dbpedia"} ! metatarsal bone +relationship: has_muscle_insertion UBERON:0010721 {notes="medial cuneiform and first metatarsal bones of the foot", source="dbpedia"} ! distal tarsal bone + +[Term] +id: UBERON:0001386 +name: extensor digitorum longus +def: "A penniform muscle of the lateral front part of the hindlimb responsible for extension of the digits and dorsiflexion of the ankle." [MP:0004246] +subset: pheno_slim +subset: uberon_slim +synonym: "extensor digitorum longus muscle" EXACT [BTO:0000436] +synonym: "musculus extensor digitorum longus" RELATED LATIN [http://en.wikipedia.org/wiki/Extensor_digitorum_longus_muscle] +synonym: "toe extensor" EXACT [HP:0011916] +synonym: "toe extensor muscle" EXACT [] +xref: BTO:0000436 +xref: EMAPA:35330 +xref: FMA:22534 +xref: http://en.wikipedia.org/wiki/Extensor_digitorum_longus_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224464 +xref: MA:0002295 +xref: NCIT:C52918 +xref: UMLS:C0224464 {source="ncithesaurus:Extensor_Digitorum_Longus"} +is_a: UBERON:0000311 {source="BTO"} ! extensor muscle +is_a: UBERON:0003663 ! hindlimb muscle +relationship: has_muscle_insertion UBERON:0001449 {notes="Dorsal surface; middle and distal phalanges of lateral four digits", source="dbpedia"} ! phalanx of pes +relationship: has_muscle_origin UBERON:0000979 {notes="Anterior lateral condyle of tibia anterior shaft of fibula and superior of interosseous membrane", source="dbpedia"} ! tibia +relationship: has_muscle_origin UBERON:0001446 {notes="Anterior lateral condyle of tibia anterior shaft of fibula and superior of interosseous membrane", source="dbpedia"} ! fibula +relationship: has_muscle_origin UBERON:0009991 {notes="Anterior lateral condyle of tibia anterior shaft of fibula and superior of interosseous membrane", source="dbpedia"} ! lateral condyle of tibia +relationship: innervated_by UBERON:0001324 {source="dbpedia"} ! common fibular nerve + +[Term] +id: UBERON:0001387 +name: fibularis longus +def: "A superficial muscle in the lateral compartment of the leg, and acts to evert and plantar flex the ankle. It is situated at the upper part of the lateral side of the leg, and is the most superficial of the three peroneus muscles. It is innervated by the superficial fibular nerve (superficial peroneal nerve). [WP,unvetted]." [http://en.wikipedia.org/wiki/Peroneus_longus] +subset: pheno_slim +subset: uberon_slim +synonym: "fibularis longus" RELATED [http://en.wikipedia.org/wiki/Peroneus_longus] +synonym: "fibularis longus muscle" RELATED [http://en.wikipedia.org/wiki/Peroneus_longus] +synonym: "musculus peroneus longus" EXACT LATIN [FMA:22539, FMA:TA] +synonym: "peronaei longus" RELATED [http://en.wikipedia.org/wiki/Peroneus_longus] +synonym: "peronaeus longus" RELATED [http://en.wikipedia.org/wiki/Peroneus_longus] +synonym: "peroneous longus" RELATED [http://en.wikipedia.org/wiki/Peroneus_longus] +synonym: "peroneus longus" EXACT [] +synonym: "peroneus longus muscle" EXACT [] +synonym: "peroneus longus muscle" RELATED [http://en.wikipedia.org/wiki/Peroneus_longus] +xref: EMAPA:36253 +xref: FMA:22539 +xref: galen:PeroneusLongus +xref: http://linkedlifedata.com/resource/umls/id/C0224469 +xref: http://www.snomedbrowser.com/Codes/Details/361825008 +xref: MA:0002356 +xref: NCIT:C53171 +xref: Peroneus:longus +xref: UMLS:C0224469 {source="ncithesaurus:Peroneus_Longus"} +is_a: UBERON:0009132 ! peroneus +relationship: has_muscle_antagonist UBERON:0001385 {source="dbpedia"} ! tibialis anterior +relationship: has_muscle_insertion UBERON:0003650 {source="dbpedia"} ! metatarsal bone of digit 1 + +[Term] +id: UBERON:0001388 +name: gastrocnemius +def: "The most superficial muscle of the triceps surae group, in the posterior portion of the lower hindleg." [http://orcid.org/0000-0002-6601-2165, ISBN:0073040584, MP:0013188] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "gastrocnemius muscle" EXACT [BTO:0000506] +synonym: "m. gastrocnemius" EXACT [] +synonym: "m.gastrocnemius" EXACT [] +synonym: "musculus gastrocnemius" RELATED LATIN [http://en.wikipedia.org/wiki/Gastrocnemius_muscle] +xref: BTO:0000506 +xref: EFO:0001413 +xref: EHDAA2:0000701 +xref: EHDAA:8293 +xref: EMAPA:35375 +xref: FMA:22541 +xref: galen:Gastrocnemius +xref: Gastrocnemius:muscle +xref: http://linkedlifedata.com/resource/umls/id/C0242691 +xref: http://www.snomedbrowser.com/Codes/Details/181700004 +xref: MA:0002306 +xref: NCIT:C32666 +xref: UMLS:C0242691 {source="ncithesaurus:Gastrocnemius_Muscle"} +xref: VHOG:0001193 +is_a: UBERON:0004256 ! hindlimb zeugopod muscle +relationship: contributes_to_morphology_of UBERON:0003661 ! limb muscle +relationship: has_muscle_antagonist UBERON:0001385 {source="dbpedia"} ! tibialis anterior +relationship: has_muscle_insertion UBERON:0001450 {notes="tendo calcaneus into mid-posteior calcaneus", source="dbpedia"} ! calcaneus +relationship: has_muscle_insertion UBERON:0003701 {notes="tendo calcaneus into mid-posteior calcaneus", source="dbpedia"} ! calcaneal tendon +relationship: has_muscle_origin UBERON:0009984 {notes="superior to articular surfaces of lateral condyle of femur and medial condyle of femur", source="dbpedia"} ! medial condyle of femur +relationship: innervated_by UBERON:0001323 {notes="tibial nerve from the sciatic specifically nerve roots", source="dbpedia"} ! tibial nerve +relationship: part_of UBERON:0001665 {source="FMA"} ! triceps surae + +[Term] +id: UBERON:0001389 +name: soleus muscle +def: "A deep muscle of the triceps surae group, in the superficial posterior compartment of the leg." [http://en.wikipedia.org/wiki/Soleus_muscle, http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "soleus" EXACT [MA:0002424] +xref: BTO:0001265 +xref: EFO:0001946 +xref: EMAPA:35786 +xref: FMA:22542 +xref: galen:Soleus +xref: http://linkedlifedata.com/resource/umls/id/C0242694 +xref: http://www.snomedbrowser.com/Codes/Details/181702007 +xref: MA:0002424 +xref: NCIT:C53075 +xref: Soleus:muscle +xref: UMLS:C0242694 {source="ncithesaurus:Soleus"} +is_a: UBERON:0004256 ! hindlimb zeugopod muscle +relationship: contributes_to_morphology_of UBERON:0003661 ! limb muscle +relationship: has_muscle_antagonist UBERON:0001385 {source="dbpedia"} ! tibialis anterior +relationship: has_muscle_insertion UBERON:0003701 {source="dbpedia"} ! calcaneal tendon +relationship: has_muscle_origin UBERON:0001446 {notes="fibula medial border of tibia", source="dbpedia"} ! fibula +relationship: innervated_by UBERON:0001323 {notes="tibial nerve specifically nerve roots ", source="dbpedia"} ! tibial nerve +relationship: part_of UBERON:0001665 {source="FMA"} ! triceps surae + +[Term] +id: UBERON:0001390 +name: sural artery +def: "The sural arteries (inferior muscular arteries) are two large branches, which are distributed to the Gastrocnemius, Soleus, and Plantaris. The term applies to any of four or five arteries arising from the popliteal artery, with distribution to the muscles and integument of the calf, and with anastomoses to the posterior tibial, medial and lateral inferior genicular arteries. [WP,unvetted]." [http://en.wikipedia.org/wiki/Sural_artery] +subset: uberon_slim +xref: EMAPA:37125 {source="MA:th"} +xref: FMA:22570 +xref: http://linkedlifedata.com/resource/umls/id/C0226464 +xref: http://www.snomedbrowser.com/Codes/Details/302693002 +xref: MA:0002058 +xref: NCIT:C52734 +xref: Sural:artery +xref: UMLS:C0226464 {source="ncithesaurus:External_Sural_Artery"} +is_a: UBERON:0001637 ! artery + +[Term] +id: UBERON:0001391 +name: popliteus muscle +def: "The popliteus muscle in the leg is used to unlock the knee by laterally rotating the femur on the tibia during a closed chain movement (such as one with the foot in contact with the ground). [WP,unvetted]." [http://en.wikipedia.org/wiki/Popliteus_muscle] +subset: uberon_slim +synonym: "m.popliteus" EXACT [] +synonym: "musculus popliteus" RELATED LATIN [http://en.wikipedia.org/wiki/Popliteus_muscle] +synonym: "poplitea" EXACT [] +synonym: "popliteal" EXACT [] +synonym: "popliteal muscle" EXACT [FMA:22590] +synonym: "popliteus" EXACT [FMA:22590] +synonym: "popliteus" EXACT [MA:0002554] +xref: EMAPA:36240 +xref: FMA:22590 +xref: http://linkedlifedata.com/resource/umls/id/C0224457 +xref: http://www.snomedbrowser.com/Codes/Details/245032004 +xref: MA:0002554 +xref: NCIT:C33340 +xref: Popliteus:muscle +xref: UMLS:C0224457 {source="ncithesaurus:Popliteus_Muscle"} +is_a: UBERON:0001383 ! muscle of leg +relationship: has_muscle_insertion UBERON:0009980 {notes="middle facet of the lateral surface of the lateral femoral condyle", source="dbpedia"} ! condyle of femur +relationship: has_muscle_origin UBERON:0000979 {notes="posterior-medial tibia under the tibial condyles", source="dbpedia"} ! tibia +relationship: innervated_by UBERON:0001323 {source="dbpedia"} ! tibial nerve + +[Term] +id: UBERON:0001392 +name: flexor hallucis longus +def: "A deep muscle of the posterior compartment of the hindlimb that is innervated by the tibial nerve, arises from the fibula and insets in the distal phalanx of pedal digit 1." [http://en.wikipedia.org/wiki/Flexor_hallucis_longus_muscle] +subset: uberon_slim +synonym: "flexor hallucis longus muscle" EXACT [http://en.wikipedia.org/wiki/Flexor_hallucis_longus_muscle] +xref: EMAPA:37588 {source="MA:th"} +xref: FMA:22593 +xref: http://en.wikipedia.org/wiki/Flexor_hallucis_longus_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224473 +xref: http://www.snomedbrowser.com/Codes/Details/361826009 +xref: MA:0002301 +xref: NCIT:C52925 +xref: UMLS:C0224473 {source="ncithesaurus:Flexor_Hallucis_Longus"} +is_a: UBERON:0000366 ! flexor muscle +is_a: UBERON:0001383 ! muscle of leg +relationship: has_muscle_insertion UBERON:0004315 {notes="Plantar surface; base of distal phalanx of hallux", source="dbpedia"} ! distal phalanx of pedal digit 1 +relationship: has_muscle_origin UBERON:0001446 {notes="fibula posterior aspect of middle 1/3", source="dbpedia"} ! fibula +relationship: innervated_by UBERON:0001323 {notes="tibial nerve S1 and S2 nerve roots", source="dbpedia"} ! tibial nerve + +[Term] +id: UBERON:0001393 +name: auditory cortex +def: "The part of the brain that is the ultimate target of afferent auditory information." [http://www.ncbi.nlm.nih.gov/books/NBK10900/] +subset: pheno_slim +subset: uberon_slim +synonym: "A1 (primary auditory cortex)" RELATED [http://en.wikipedia.org/wiki/Primary_auditory_cortex] +synonym: "anterior transverse temporal area 41" RELATED [http://en.wikipedia.org/wiki/Primary_auditory_cortex] +synonym: "auditory area" RELATED [BTO:0004343] +synonym: "auditory areas" RELATED [BAMS:AUD] +synonym: "auditory cortex" RELATED [http://en.wikipedia.org/wiki/Primary_auditory_cortex] +synonym: "BA41" RELATED ABBREVIATION [] +synonym: "BA42" RELATED ABBREVIATION [] +synonym: "Brodmann area 41" RELATED [http://en.wikipedia.org/wiki/Primary_auditory_cortex] +synonym: "Brodmann area 41 & 42" RELATED [http://en.wikipedia.org/wiki/Primary_auditory_cortex] +synonym: "Brodmann area 42" RELATED [http://en.wikipedia.org/wiki/Primary_auditory_cortex] +synonym: "posterior transverse temporal area 42" RELATED [http://en.wikipedia.org/wiki/Primary_auditory_cortex] +synonym: "primary auditory cortex" RELATED [http://en.wikipedia.org/wiki/Auditory_cortex] +synonym: "temporal auditory neocortex" RELATED [GEO:GSE13344] +xref: Auditory:cortex +xref: BAMS:Area_1 +xref: BAMS:Au1 +xref: BAMS:AUD +xref: BTO:0004343 +xref: EMAPA:35156 +xref: FMA:226221 +xref: GAID:682 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1556 +xref: http://linkedlifedata.com/resource/umls/id/C0004302 +xref: MA:0000942 +xref: MBA:247 +xref: MESH:A08.186.211.730.885.213.863.297 +xref: NCIT:C52712 +xref: UMLS:C0004302 {source="ncithesaurus:Auditory_Cortex"} +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0001871 ! temporal lobe +relationship: part_of UBERON:0000956 ! cerebral cortex +relationship: part_of UBERON:0001871 {source="MA"} ! temporal lobe + +[Term] +id: UBERON:0001394 +name: axillary artery +def: "Artery that supplies the axilla" [http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "arteria axillaris" EXACT LATIN [http://en.wikipedia.org/wiki/Axillary_artery] +synonym: "axillary part of subclavian artery" EXACT [FMA:22654] +synonym: "axillary part of trunk of subclavian artery" EXACT [] +xref: Axillary:artery +xref: EMAPA:18749 +xref: FMA:22654 +xref: GAID:473 +xref: galen:AxillaryArtery +xref: http://linkedlifedata.com/resource/umls/id/C0004455 +xref: http://www.snomedbrowser.com/Codes/Details/181321001 +xref: MA:0002573 +xref: MESH:D001366 +xref: NCIT:C32169 +xref: OpenCyc:Mx4rwRh-vZwpEbGdrcN5Y29ycA +xref: UMLS:C0004455 {source="ncithesaurus:Axillary_Artery"} +is_a: UBERON:0001637 ! artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0009472 ! axilla +relationship: part_of UBERON:0001467 ! shoulder +relationship: supplies UBERON:0009472 ! axilla + +[Term] +id: UBERON:0001395 +name: thoraco-acromial artery +def: "The thoracoacromial artery (acromiothoracic artery; thoracic axis) is a short trunk, which arises from the forepart of the axillary artery, its origin being generally overlapped by the upper edge of the Pectoralis minor. [WP,unvetted]." [http://en.wikipedia.org/wiki/Thoraco-acromial_artery] +subset: uberon_slim +synonym: "acromiothoracic artery" EXACT [] +synonym: "thoracoacromial artery" EXACT [] +xref: EMAPA:37128 {source="MA:th"} +xref: FMA:22671 +xref: http://linkedlifedata.com/resource/umls/id/C0226420 +xref: http://www.snomedbrowser.com/Codes/Details/244315002 +xref: MA:0002064 +xref: NCIT:C32046 +xref: Thoraco-acromial:artery +xref: UMLS:C0226420 {source="ncithesaurus:Acromial_Thoracic_Artery"} +is_a: UBERON:0001637 ! artery +relationship: part_of UBERON:0001467 ! shoulder + +[Term] +id: UBERON:0001396 +name: lateral thoracic artery +def: "A blood vessel that supplies oxygenated blood to the lateral structures of the thorax and breast. It originates from the axillary artery and follows the lower border of the Pectoralis minor muscle to the side of the chest, supplies the serratus ventralis muscle and the Pectoralis major muscle, and sends branches across the axilla to the axillary lymph nodes and Subscapularis muscle. It anastomoses with the internal thoracic artery, subscapular, and intercostal arteries, and with the pectoral branch of the thoracoacromial artery. In the female it supplies an external mammary branch which turns round the free edge of the Pectoralis major and supplies the breasts. [WP,unvetted]." [http://en.wikipedia.org/wiki/Lateral_thoracic_artery] +subset: uberon_slim +synonym: "arteria thoracalis lateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_thoracic_artery] +synonym: "external mammary artery" EXACT [] +xref: EMAPA:37095 {source="MA:th"} +xref: FMA:22674 +xref: http://en.wikipedia.org/wiki/Lateral_thoracic_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226421 +xref: http://www.snomedbrowser.com/Codes/Details/206135006 +xref: MA:0001989 +xref: NCIT:C52951 +xref: UMLS:C0226421 {source="ncithesaurus:Lateral_Thoracic_Artery"} +is_a: UBERON:0001637 ! artery +relationship: part_of UBERON:0001467 ! shoulder + +[Term] +id: UBERON:0001397 +name: subscapular artery +def: "The subscapular artery, the largest branch of the axillary artery, arises at the lower border of the Subscapularis, which it follows to the inferior angle of the scapula, where it anastomoses with the lateral thoracic and intercostal arteries and with the descending branch of the transverse cervical, and ends in the neighboring muscles. About 4 cm. from its origin it gives off two branches, first the scapular circumflex artery and then the thoracodorsal artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/Subscapular_artery] +subset: uberon_slim +synonym: "arteria subscapularis" RELATED LATIN [http://en.wikipedia.org/wiki/Subscapular_artery] +xref: EMAPA:37116 {source="MA:th"} +xref: FMA:22677 +xref: http://linkedlifedata.com/resource/umls/id/C0226422 +xref: http://www.snomedbrowser.com/Codes/Details/244311006 +xref: MA:0002050 +xref: NCIT:C33650 +xref: Subscapular:artery +xref: UMLS:C0226422 {source="ncithesaurus:Subscapular_Artery"} +is_a: UBERON:0001637 ! artery + +[Term] +id: UBERON:0001398 +name: brachial artery +def: "The brachial artery is the major blood vessel of the (upper) arm. It is the continuation of the axillary artery beyond the lower margin of teres major muscle. It continues down the ventral surface of the arm until it reaches the cubital fossa at the elbow. It then divides into the radial and ulnar arteries which run down the forearm. In some individuals, the bifurcation occurs much earlier and the ulnar and radial arteries extend through the upper arm. The pulse of the brachial artery is palpable on the anterior aspect of the elbow, medial to the tendon of the biceps, and, with the use of a stethoscope and sphygmomanometer (blood pressure cuff) often used to measure the blood pressure. The brachial artery is closely related to the median nerve; in proximal regions, the median nerve is immediately lateral to the brachial artery. Distally, the median nerve crosses the medial side of the brachial artery and lies anterior to the elbow joint. [WP,unvetted]." [http://en.wikipedia.org/wiki/Brachial_artery] +subset: efo_slim +subset: uberon_slim +synonym: "arteria brachialis" RELATED LATIN [http://en.wikipedia.org/wiki/Brachial_artery] +synonym: "brachial part of trunk of subclavian artery" EXACT [] +xref: AAO:0010504 +xref: Brachial:artery +xref: EFO:0004231 +xref: FMA:22689 +xref: GAID:475 +xref: galen:BrachialArtery +xref: http://linkedlifedata.com/resource/umls/id/C0006087 +xref: http://www.snomedbrowser.com/Codes/Details/181322008 +xref: MA:0001921 +xref: MESH:D001916 +xref: NCIT:C12681 +xref: OpenCyc:Mx4rwM-i5JwpEbGdrcN5Y29ycA +xref: UMLS:C0006087 {source="ncithesaurus:Brachial_Artery"} +is_a: UBERON:0001637 ! artery + +[Term] +id: UBERON:0001399 +name: deep brachial artery +def: "The arteria profunda brachii (also known as deep artery of the arm and the deep brachial artery) is a large vessel which arises from the medial and back part of the brachial, just below the lower border of the Teres major. [WP,unvetted]." [http://en.wikipedia.org/wiki/Deep_brachial_artery] +subset: uberon_slim +synonym: "arteria profunda brachii" EXACT LATIN [FMA:22695, FMA:TA] +synonym: "profunda brachii artery" EXACT [] +xref: EMAPA:37215 {source="MA:th"} +xref: FMA:22695 +xref: http://en.wikipedia.org/wiki/Deep_brachial_artery +xref: http://www.snomedbrowser.com/Codes/Details/41065002 +xref: MA:0002026 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003507 ! arm blood vessel + +[Term] +id: UBERON:0001400 +name: iliocostalis thoracis muscle +def: "The iliocostalis dorsi (musculus accessorius; iliocostalis thoracis) arises by flattened tendons from the upper borders of the angles of the lower six ribs medial to the tendons of insertion of the iliocostalis lumborum; these become muscular, and are inserted into the upper borders of the angles of the upper six ribs and into the back of the transverse process of the seventh cervical vertebra." [http://en.wikipedia.org/wiki/Iliocostalis#Iliocostalis_thoracis] +synonym: "iliocostalis thoracis" RELATED [http://en.wikipedia.org/wiki/Iliocostalis] +synonym: "iliocostalis thoracis muscle" RELATED [http://en.wikipedia.org/wiki/Iliocostalis] +synonym: "musculus accessorius" RELATED [http://en.wikipedia.org/wiki/Iliocostalis] +xref: EMAPA:37604 {source="MA:th"} +xref: FMA:22703 +xref: http://www.snomedbrowser.com/Codes/Details/244856005 +xref: Iliocostalis_thoracis +xref: MA:0002320 +is_a: UBERON:0002251 ! iliocostalis muscle + +[Term] +id: UBERON:0001401 +name: longissimus thoracis muscle +def: "The longissimus thoracis is the intermediate and largest of the continuations of the sacrospinalis.[WP]. intermediate erector spinae muscle of back; origin, with iliocostalis and from transverse processes of lower thoracic vertebrae; insertion, by lateral slips into most or all of the ribs between angles and tubercles and into tips of transverse processes of upper lumbar vertebrae, and by medial slips into accessory processes of upper lumbar and transverse processes of thoracic vertebrae; action, extends vertebral column; nerve supply, dorsal primary rami of thoracic and lumbar spinal nerves[Stedmans]." [http://en.wikipedia.org/wiki/Longissimus#Longissimus_thoracis, http://www.medilexicon.com/medicaldictionary.php?s=longissimus+thoracis+%28muscle%29] +subset: uberon_slim +synonym: "longissimus dorsi" EXACT [BTO:0001651] +synonym: "longissimus dorsi muscle" EXACT [] +synonym: "longissimus thoracis" EXACT [MA:0002339] +synonym: "musculus longissimus dorsi" EXACT LATIN [http://www.medilexicon.com/medicaldictionary.php?s=longissimus+thoracis+%28muscle%29] +synonym: "musculus longissimus thoracis" EXACT LATIN [BTO:0001651] +xref: AAO:0010775 +xref: BTO:0001651 +xref: EMAPA:37653 {source="MA:th"} +xref: FMA:22709 +xref: http://linkedlifedata.com/resource/umls/id/C0224307 +xref: http://www.snomedbrowser.com/Codes/Details/244859003 +xref: Longissimus_thoracis +xref: MA:0002339 +xref: NCIT:C53169 +xref: UMLS:C0224307 {source="ncithesaurus:Longissimus_Thoracis"} +is_a: UBERON:0000392 {source="FMA"} ! longissimus muscle + +[Term] +id: UBERON:0001402 +name: longissimus cervicis muscle +def: "A muscle with origin in transverse processes of upper thoracic vertebrae, and insertion in transverse processes of middle and upper cervical vertebrae that extends cervical vertebrae." [http://medical-dictionary.thefreedictionary.com/longissimus+cervicis+muscle, UBERON:cjm] +comment: ; nerve supply, dorsal primary rami of lower cervical and upper thoracic spinal nerves +subset: uberon_slim +synonym: "longissimus cervicis" EXACT [MA:0002337] +synonym: "musculus longissimus cervicis" RELATED [BTO:0001650] +xref: BTO:0001650 +xref: EMAPA:37651 {source="MA:th"} +xref: FMA:22711 +xref: http://linkedlifedata.com/resource/umls/id/C0224308 +xref: http://www.snomedbrowser.com/Codes/Details/244860008 +xref: Longissimus_cervicis +xref: MA:0002337 +xref: NCIT:C53167 +xref: UMLS:C0224308 {source="ncithesaurus:Longissimus_Cervicis"} +is_a: UBERON:0000392 ! longissimus muscle +is_a: UBERON:0003897 ! axial muscle +intersection_of: UBERON:0000392 ! longissimus muscle +intersection_of: has_muscle_insertion UBERON:0018143 ! transverse process of cervical vertebra +relationship: has_muscle_insertion UBERON:0018143 ! transverse process of cervical vertebra + +[Term] +id: UBERON:0001403 +name: longissimus capitis +def: "A longissimus muscle that lies medial to the longissimus cervicis, between it and the semispinalis capitis. It arises by tendons from the transverse processes of the upper four or five thoracic vertebrae, and the articular processes of the lower three or four cervical vertebrae, and is inserted into the posterior margin of the mastoid process, beneath the splenius capitis and sternocleidomastoid.[WP,unvetted]." [http://en.wikipedia.org/wiki/Longissimus#Longissimus_capitis] +subset: uberon_slim +synonym: "musculus longissimus capitis" RELATED [BTO:0001649] +synonym: "trachelomastoid muscle" RELATED [http://en.wikipedia.org/wiki/Longissimus#Longissimus_capitis] +xref: BTO:0001649 +xref: EMAPA:37650 {source="MA:th"} +xref: FMA:22714 +xref: http://linkedlifedata.com/resource/umls/id/C0224309 +xref: http://www.snomedbrowser.com/Codes/Details/244861007 +xref: Longissimus_capitis +xref: MA:0002336 +xref: NCIT:C53166 +xref: UMLS:C0224309 {source="ncithesaurus:Longissimus_Capitis"} +is_a: UBERON:0000392 ! longissimus muscle +relationship: has_muscle_insertion UBERON:0011220 {source="Mastoid:process"} ! mastoid process of temporal bone + +[Term] +id: UBERON:0001404 +name: radial artery +def: "branch of the brachial artery beginning below the elbow and extending down the forearm around the wrist and into the palm." [https://www.vocabulary.com/dictionary/arteria%20radialis] +subset: uberon_slim +synonym: "arteria radialis" RELATED LATIN [http://en.wikipedia.org/wiki/Radial_artery] +xref: EMAPA:37112 {source="MA:th"} +xref: FMA:22730 +xref: GAID:506 +xref: galen:RadialArtery +xref: http://linkedlifedata.com/resource/umls/id/C0162857 +xref: http://www.snomedbrowser.com/Codes/Details/181332001 +xref: MA:0002034 +xref: MESH:D017534 +xref: NCIT:C12838 +xref: OpenCyc:Mx4rvxzeR5wpEbGdrcN5Y29ycA +xref: Radial:artery +xref: UMLS:C0162857 {source="ncithesaurus:Radial_Artery"} +is_a: UBERON:0001637 ! artery + +[Term] +id: UBERON:0001405 +name: spinalis thoracis muscle +def: "Origin: spinous processes of two upper lumbar and two lower thoracic; insertion: spines of upper thoracic vertebrae; innervation: branches of spinal nerves; action: extends vertebral column." [BTO:0002624] +subset: uberon_slim +synonym: "musculus spinalis dorsi" RELATED [BTO:0002624] +synonym: "musculus spinalis thoracis" RELATED [BTO:0002624] +synonym: "spinal muscle of thorax" RELATED [BTO:0002624] +synonym: "spinalis dorsi" RELATED [http://en.wikipedia.org/wiki/Spinalis#Spinalis_dorsi] +synonym: "spinalis thoracis" EXACT [MA:0002381] +xref: BTO:0002624 +xref: EMAPA:37700 {source="MA:th"} +xref: FMA:22765 +xref: http://linkedlifedata.com/resource/umls/id/C0224311 +xref: http://www.snomedbrowser.com/Codes/Details/244863005 +xref: MA:0002381 +xref: NCIT:C53038 +xref: UMLS:C0224311 {source="ncithesaurus:Spinalis_Thoracis"} +is_a: UBERON:0011013 {source="FMA"} ! spinalis muscle + +[Term] +id: UBERON:0001406 +name: ulnar artery +def: "The ulnar artery is the main blood vessel, with oxygenated blood, of the medial aspect of the forearm. It arises from the brachial artery and terminates in the superficial palmar arch, which joins with the superficial branch of the radial artery. It is palpable on the anterior and medial aspect of the wrist. Along its course, it is accompanied by a similarly named vein or veins, the ulnar vein or ulnar veins. The ulnar artery, the larger of the two terminal branches of the brachial, begins a little below the bend of the elbow in the cubital fossa, and, passing obliquely downward, reaches the ulnar side of the forearm at a point about midway between the elbow and the wrist. It then runs along the ulnar border to the wrist, crosses the transverse carpal ligament on the radial side of the pisiform bone, and immediately beyond this bone divides into two branches, which enter into the formation of the superficial and deep volar arches. [WP,unvetted]." [http://en.wikipedia.org/wiki/Ulnar_artery] +subset: uberon_slim +synonym: "arteria ulnaris" EXACT LATIN [http://en.wikipedia.org/wiki/Ulnar_artery] +xref: EMAPA:37675 {source="MA:th"} +xref: FMA:22796 +xref: GAID:515 +xref: galen:UlnarArtery +xref: http://linkedlifedata.com/resource/umls/id/C0162858 +xref: http://www.snomedbrowser.com/Codes/Details/181333006 +xref: MA:0002069 +xref: MESH:D017535 +xref: NCIT:C12839 +xref: OpenCyc:Mx4rwAF2PJwpEbGdrcN5Y29ycA +xref: Ulnar:artery +xref: UMLS:C0162858 {source="ncithesaurus:Ulnar_Artery"} +is_a: UBERON:0001637 ! artery + +[Term] +id: UBERON:0001407 +name: semispinalis thoracis +def: "The Semispinalis dorsi (or semispinalis thoracis) consists of thin, narrow, fleshy fasciculi, interposed between tendons of considerable length. It arises by a series of small tendons from the transverse processes of the sixth to the tenth thoracic vertebræ, and is inserted, by tendons, into the spinous processes of the upper four thoracic and lower two cervical vertebrae. [WP,unvetted]." [http://en.wikipedia.org/wiki/Semispinalis_dorsi] +subset: uberon_slim +synonym: "musculus semispinalis dorsi" RELATED LATIN [http://en.wikipedia.org/wiki/Semispinalis_dorsi] +synonym: "musculus semispinalis thoracis" RELATED LATIN [http://en.wikipedia.org/wiki/Semispinalis_dorsi] +synonym: "semispinalis dorsi" EXACT [http://en.wikipedia.org/wiki/Semispinalis_dorsi] +synonym: "semispinalis dorsi muscle" EXACT [http://en.wikipedia.org/wiki/Semispinalis_dorsi] +xref: EMAPA:37696 {source="MA:th"} +xref: FMA:22828 +xref: http://linkedlifedata.com/resource/umls/id/C0224316 +xref: http://www.snomedbrowser.com/Codes/Details/244868001 +xref: MA:0002374 +xref: NCIT:C53006 +xref: Semispinalis:dorsi +xref: UMLS:C0224316 {source="ncithesaurus:Semispinalis_Thoracis"} +is_a: UBERON:0011017 {source="FMA"} ! semispinalis muscle +relationship: has_muscle_insertion UBERON:0001076 {notes="spinous processes of the upper four thoracic and lower two cervical vertebrae", source="dbpedia"} ! neural spine +relationship: has_muscle_origin UBERON:0001077 {notes="transverse processes of the sixth to the tenth thoracic vertebre", source="dbpedia"} ! transverse process of vertebra + +[Term] +id: UBERON:0001408 +name: semispinalis cervicis +def: "The semispinalis cervicis (semispinalis colli), thicker than the semispinalis dorsi, arises by a series of tendinous and fleshy fibers from the transverse processes of the upper five or six thoracic vertebræ, and is inserted into the cervical spinous processes, from the axis to the fifth inclusive. The fasciculus connected with the axis is the largest, and is chiefly muscular in structure. [WP,unvetted]." [http://en.wikipedia.org/wiki/Semispinalis_cervicis] +subset: uberon_slim +synonym: "musculus semispinalis cervicis" RELATED LATIN [http://en.wikipedia.org/wiki/Semispinalis_cervicis] +xref: EMAPA:37695 {source="MA:th"} +xref: FMA:22829 +xref: http://linkedlifedata.com/resource/umls/id/C0224317 +xref: http://www.snomedbrowser.com/Codes/Details/244869009 +xref: MA:0002373 +xref: NCIT:C52991 +xref: Semispinalis:cervicis +xref: UMLS:C0224317 {source="ncithesaurus:Semispinalis_Cervicis"} +is_a: UBERON:0011017 {source="FMA"} ! semispinalis muscle +relationship: has_muscle_insertion UBERON:0002413 {notes="cervical spinous processes from the axis to the fifth", source="dbpedia"} ! cervical vertebra +relationship: has_muscle_origin UBERON:0001077 {notes="transverse processes of the upper five or six thoracic vertebrae", source="dbpedia"} ! transverse process of vertebra + +[Term] +id: UBERON:0001409 +name: semispinalis capitis +def: "The Semispinalis capitis (Complexus) is situated at the upper and back part of the neck, deep to the Splenius, and medial to the Longissimus cervicis and capitis. It arises by a series of tendons from the tips of the transverse processes of the upper six or seven thoracic and the seventh cervical vertebræ, and from the articular processes of the three cervical above this. The tendons, uniting, form a broad muscle, which passes upward, and is inserted between the superior and inferior nuchal lines of the occipital bone. The medial part, usually more or less distinct from the remainder of the muscle, is frequently termed the Spinalis capitis; it is also named the Biventer cervicis since it is traversed by an imperfect tendinous inscription. [WP,unvetted]." [http://en.wikipedia.org/wiki/Semispinalis_capitis] +subset: uberon_slim +synonym: "biventer cervicis" NARROW [http://en.wikipedia.org/wiki/Semispinalis_capitis] +synonym: "complexus" RELATED [http://en.wikipedia.org/wiki/Semispinalis_capitis] +synonym: "complexus muscle" RELATED [http://en.wikipedia.org/wiki/Semispinalis_capitis] +synonym: "musculus semispinalis capitis" RELATED LATIN [http://en.wikipedia.org/wiki/Semispinalis_capitis] +synonym: "semispinales capitis" RELATED [http://en.wikipedia.org/wiki/Semispinalis_capitis] +synonym: "semispinalis capitis muscle" RELATED [http://en.wikipedia.org/wiki/Semispinalis_capitis] +xref: EMAPA:37694 {source="MA:th"} +xref: FMA:22830 +xref: http://linkedlifedata.com/resource/umls/id/C0224318 +xref: http://www.snomedbrowser.com/Codes/Details/244870005 +xref: MA:0002372 +xref: NCIT:C52989 +xref: Semispinalis:capitis +xref: UMLS:C0224318 {source="ncithesaurus:Semispinalis_Capitis"} +is_a: UBERON:0011017 {source="FMA"} ! semispinalis muscle +relationship: has_muscle_origin UBERON:0001077 {notes="Transversal process of lower cervical and higher thoracal columna", source="dbpedia"} ! transverse process of vertebra + +[Term] +id: UBERON:0001410 +name: common palmar digital artery +def: "Three common palmar digital arteries arise from the convexity of the superficial palmar arch and proceed distally on the second, third, and fourth lumbricales muscles." [http://en.wikipedia.org/wiki/Common_palmar_digital_artery] +subset: uberon_slim +synonym: "common palmar digital arteries" EXACT [] +xref: EMAPA:37207 {source="MA:th"} +xref: FMA:22852 +xref: http://en.wikipedia.org/wiki/Common_palmar_digital_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226446 +xref: http://www.snomedbrowser.com/Codes/Details/38396009 +xref: MA:0001957 +xref: NCIT:C52744 +xref: UMLS:C0226446 {source="ncithesaurus:Common_Palmar_Digital_Artery"} +is_a: UBERON:0006141 ! palmar digital artery + +[Term] +id: UBERON:0001411 +name: basilic vein +def: "A superficial vein of the upper limb that drain parts of manus and forearm." [http://en.wikipedia.org/wiki/Basilic_vein] +subset: uberon_slim +synonym: "basilic vein of forearm" EXACT [] +synonym: "vena basilica antebrachii" EXACT LATIN [FMA:22908, FMA:TA] +xref: Basilic:vein +xref: EMAPA:37439 {source="MA:th"} +xref: FMA:22908 +xref: galen:BasilicVein +xref: http://linkedlifedata.com/resource/umls/id/C0226801 +xref: http://www.snomedbrowser.com/Codes/Details/181393008 +xref: MA:0002086 +xref: NCIT:C32197 +xref: OpenCyc:Mx4rvwrxEpwpEbGdrcN5Y29ycA +xref: UMLS:C0226801 {source="ncithesaurus:Basilic_Vein"} +is_a: UBERON:0003515 ! forelimb blood vessel +is_a: UBERON:0035550 ! superficial vein +relationship: drains UBERON:0002102 ! forelimb +relationship: part_of UBERON:0000985 ! axillary vein +relationship: part_of UBERON:0001587 ! subclavian vein +relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein +relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein + +[Term] +id: UBERON:0001412 +name: common palmar digital vein +comment: Some sources distinguish between the "proper palmar digital veins", which are more distal, and the "common palmar digital veins", which are more proximal. +synonym: "proximal palmar digital vein" EXACT [http://en.wikipedia.org/wiki/Palmar_digital_veins] +xref: EMAPA:37222 {source="MA:th"} +xref: FMA:22923 +xref: MA:0002121 +is_a: UBERON:0004563 ! forelimb digital vein + +[Term] +id: UBERON:0001413 +name: brachial vein +def: "A vein that accompanies the brachial artery between the shoulder and the elbow." [UBERON:cjm] +subset: uberon_slim +xref: AAO:0010512 +xref: Brachial:vein +xref: EMAPA:37445 {source="MA:th"} +xref: FMA:22934 +xref: galen:BrachialVein +xref: http://linkedlifedata.com/resource/umls/id/C0226812 +xref: http://www.snomedbrowser.com/Codes/Details/181390006 +xref: MA:0002087 +xref: NCIT:C12883 +xref: OpenCyc:Mx4rwS3In5wpEbGdrcN5Y29ycA +xref: UMLS:C0226812 {source="ncithesaurus:Brachial_Vein"} +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003507 ! arm blood vessel +relationship: part_of UBERON:0000985 ! axillary vein +relationship: part_of UBERON:0001587 ! subclavian vein +relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein +relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein + +[Term] +id: UBERON:0001414 +name: median basilic vein +def: "A vein between the biceps and pronator radii teres muscles that unites with the common ulnar vein to form the basilic vein within the forearm." [ncithesaurus:Median_Basilic_Vein] +subset: uberon_slim +synonym: "medial antecubital vein" RELATED [http://en.wikipedia.org/wiki/Median_cubital_vein] +synonym: "median cubital" RELATED [http://en.wikipedia.org/wiki/Median_cubital_vein] +synonym: "median cubital vein" EXACT [http://en.wikipedia.org/wiki/Median_cubital_vein, MA:0002176] +synonym: "vena mediana cubiti" RELATED LATIN [http://en.wikipedia.org/wiki/Median_cubital_vein] +xref: EMAPA:37173 {source="MA:th"} +xref: FMA:22963 +xref: http://en.wikipedia.org/wiki/Median_cubital_vein +xref: http://linkedlifedata.com/resource/umls/id/C0226807 +xref: http://www.snomedbrowser.com/Codes/Details/181392003 +xref: http://www.snomedbrowser.com/Codes/Details/368496000 +xref: MA:0002176 +xref: NCIT:C33070 +xref: OpenCyc:Mx4rvzQSYZwpEbGdrcN5Y29ycA +is_a: UBERON:0001411 ! basilic vein +relationship: tributary_of UBERON:0001411 {source="FMA/obol"} ! basilic vein + +[Term] +id: UBERON:0001415 +name: skin of pelvis +def: "A zone of skin that is part of a pelvis [Automatically generated definition]." [OBOL:automatic] +synonym: "pelvic skin" EXACT [] +synonym: "pelvis skin" EXACT [] +synonym: "pelvis zone of skin" EXACT [OBOL:automatic] +synonym: "zone of skin of pelvis" EXACT [OBOL:automatic] +xref: EMAPA:37282 {source="MA:th"} +xref: FMA:22984 +xref: http://www.snomedbrowser.com/Codes/Details/181517009 +xref: MA:0000546 +is_a: UBERON:0003836 ! abdominal segment skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0002355 ! pelvic region of trunk +relationship: part_of UBERON:0002355 ! pelvic region of trunk + +[Term] +id: UBERON:0001416 +name: skin of abdomen +def: "A zone of skin that is part of an abdomen [Automatically generated definition]." [OBOL:automatic] +subset: efo_slim +subset: pheno_slim +synonym: "abdomen skin" EXACT [] +synonym: "abdomen zone of skin" EXACT [OBOL:automatic] +synonym: "abdominal skin" EXACT [] +synonym: "skin of abdomen proper" EXACT [FMA:22988] +synonym: "zone of skin of abdomen" EXACT [OBOL:automatic] +xref: EFO:0000214 +xref: FMA:22988 +xref: FMA:23000 +xref: http://linkedlifedata.com/resource/umls/id/C0222166 +xref: http://www.snomedbrowser.com/Codes/Details/361707007 +xref: MA:0000523 +xref: NCIT:C52758 +xref: UMLS:C0222166 {source="ncithesaurus:Abdominal_Skin"} +is_a: UBERON:0003836 ! abdominal segment skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0000916 ! abdomen +relationship: part_of UBERON:0000916 ! abdomen + +[Term] +id: UBERON:0001417 +name: skin of neck +def: "A zone of skin that is part of a neck [Automatically generated definition]." [OBOL:automatic] +synonym: "neck (volume) zone of skin" EXACT [OBOL:automatic] +synonym: "neck skin" EXACT [] +synonym: "neck zone of skin" EXACT [OBOL:automatic] +synonym: "zone of skin of neck" EXACT [OBOL:automatic] +synonym: "zone of skin of neck (volume)" EXACT [OBOL:automatic] +xref: EMAPA:37277 {source="MA:th"} +xref: FMA:23021 +xref: FMA:23022 +xref: http://linkedlifedata.com/resource/umls/id/C0205030 +xref: http://www.snomedbrowser.com/Codes/Details/361705004 +xref: MA:0000590 +xref: NCIT:C52756 +xref: UMLS:C0205030 {source="ncithesaurus:Neck_Skin"} +is_a: UBERON:0012180 ! head or neck skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0000974 ! neck +relationship: part_of UBERON:0000974 ! neck + +[Term] +id: UBERON:0001418 +name: skin of thorax +def: "A zone of skin that is part of a thorax [Automatically generated definition]." [OBOL:automatic] +synonym: "thoracic skin" EXACT [] +synonym: "thorax skin" EXACT [] +synonym: "thorax zone of skin" EXACT [OBOL:automatic] +synonym: "upper body skin" RELATED [] +synonym: "zone of skin of thorax" EXACT [OBOL:automatic] +xref: EMAPA:37765 {source="MA:th"} +xref: FMA:23028 +xref: FMA:23029 +xref: http://www.snomedbrowser.com/Codes/Details/281723000 +xref: MA:0000564 +is_a: UBERON:0001085 ! skin of trunk +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk +relationship: part_of UBERON:0000915 ! thoracic segment of trunk + +[Term] +id: UBERON:0001419 +name: skin of limb +def: "A zone of skin that is part of a limb [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "limb skin" EXACT [] +synonym: "limb zone of skin" EXACT [OBOL:automatic] +synonym: "zone of skin of limb" EXACT [OBOL:automatic] +xref: EMAPA:32726 +xref: FMA:23100 +xref: http://linkedlifedata.com/resource/umls/id/C1282135 +xref: http://www.snomedbrowser.com/Codes/Details/314403009 +xref: MA:0000694 +xref: NCIT:C53276 +xref: UMLS:C1282135 {source="ncithesaurus:Skin_of_the_Extremity"} +is_a: UBERON:0000014 ! zone of skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0002101 ! limb +relationship: part_of UBERON:0002101 ! limb + +[Term] +id: UBERON:0001420 +name: subscapular vein +def: "a vein formed by the confluence of the thoracodorsal and circumflex scapular veins and accompanying the subscapular artery to drain into the axillary vein." [http://www.medilexicon.com/medicaldictionary.php?t=97509] +synonym: "vena subscapularis" EXACT LATIN [] +xref: EMAPA:37190 {source="MA:th"} +xref: FMA:23113 +xref: MA:0002224 +is_a: UBERON:0001638 ! vein +relationship: part_of UBERON:0000985 ! axillary vein +relationship: part_of UBERON:0001587 ! subclavian vein +relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein +relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein + +[Term] +id: UBERON:0001421 +name: pectoral girdle region +def: "An organism subdivision that includes the pectoral girdle skeleton and associated soft tissue. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc). Examples: There are only two instances in an organism, right and left pectoral girdle regions." [FMA:23217, https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "cingulum membri superioris" EXACT LATIN [FMA:23217, FMA:TA] +synonym: "cingulum membri superioris" NARROW [FMA:TA] +synonym: "girdle - pectoral" EXACT [] +synonym: "pectoral girdle" RELATED [] +synonym: "pectoral region" RELATED [] +synonym: "shoulder girdle" NARROW [FMA:23217] +synonym: "upper limb girdle" NARROW [FMA:23217] +xref: EMAPA:37856 {source="MA:th"} +xref: FMA:23217 +xref: galen:ShoulderGirdle +xref: http://www.snomedbrowser.com/Codes/Details/229759004 +xref: VSAO:0000305 +is_a: UBERON:0007823 ! appendage girdle region +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0007823 ! appendage girdle region +intersection_of: part_of UBERON:0010708 ! pectoral complex +disjoint_from: UBERON:0007831 ! pectoral girdle skeleton +relationship: has_skeleton UBERON:0007831 ! pectoral girdle skeleton +relationship: in_lateral_side_of UBERON:0000468 ! multicellular organism +relationship: part_of UBERON:0010708 ! pectoral complex + +[Term] +id: UBERON:0001422 +name: facial lymphatic vessel +def: "A lymphatic vessel that is part of a face [Automatically generated definition]." [OBOL:automatic] +subset: vertebrate_core +synonym: "buccal lymphatic vessel" EXACT [] +synonym: "face lymph vessel" EXACT [OBOL:automatic] +synonym: "face lymphatic vessel" EXACT [OBOL:automatic] +synonym: "FL" RELATED [] +synonym: "lymph vessel of face" EXACT [OBOL:automatic] +synonym: "lymphatic vessel of face" EXACT [OBOL:automatic] +xref: FMA:233946 +xref: TAO:0005108 +xref: ZFA:0005108 +is_a: UBERON:0001473 ! lymphatic vessel +intersection_of: UBERON:0001473 ! lymphatic vessel +intersection_of: part_of UBERON:0001456 ! face +relationship: part_of UBERON:0001456 ! face +relationship: part_of UBERON:0011363 ! cranial lymph vasculature + +[Term] +id: UBERON:0001423 +name: radius bone +def: "The major preaxial endochondral bone in the anterior zeugopod[Phenoscape]." [PHENOSCAPE:mah] +comment: Due to the presence of the radius in Tetrpodomorph fish this element is not inherently linked to the presence of digits or flexor musculature. The corresponding bone in the posterior fin/limb is the tibia.[Phenoscape]. In four-legged animals, the radius is the main load-bearing bone of the lower forelimb. Its structure is similar in most terrestrial tetrapods, but it may be fused with the ulna in some mammals (such as horses) and reduced or modified in animals with flippers or vestigial forelimbs [ISBN:0-03-910284-X] +subset: pheno_slim +subset: uberon_slim +synonym: "radius" EXACT [MA:0001357] +xref: AAO:0000788 +xref: CALOHA:TS-2199 +xref: EMAPA:19103 +xref: FMA:23463 +xref: GAID:185 +xref: galen:Radius +xref: http://linkedlifedata.com/resource/umls/id/C0034627 +xref: http://www.snomedbrowser.com/Codes/Details/181940002 +xref: MA:0001357 +xref: MESH:A02.835.232.087.702 +xref: NCIT:C12777 +xref: OpenCyc:Mx4rwUsDcZwpEbGdrcN5Y29ycA +xref: Radius:(bone) +xref: UMLS:C0034627 {source="ncithesaurus:Radius_Bone"} +xref: VSAO:0005012 +is_a: UBERON:0003466 ! forelimb zeugopod bone +is_a: UBERON:0003607 ! forelimb long bone +is_a: UBERON:0015001 ! radius endochondral element +intersection_of: UBERON:0015001 ! radius endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0006286 {evidence="definitional"} ! radius cartilage element +relationship: preaxialmost_part_of UBERON:0010703 ! forelimb zeugopod skeleton + +[Term] +id: UBERON:0001424 +name: ulna +def: "The major postaxial endochondral bone in the anterior zeugopod[Phenoscape]." [PHENOSCAPE:mah] +comment: The corresponding bone in the posterior fin/limb is the fibula. +subset: pheno_slim +subset: uberon_slim +xref: AAO:0000789 +xref: EMAPA:19104 +xref: FMA:23466 +xref: GAID:188 +xref: galen:Ulna +xref: http://en.wikipedia.org/wiki/Ulna +xref: http://linkedlifedata.com/resource/umls/id/C0041600 +xref: http://www.snomedbrowser.com/Codes/Details/181948009 +xref: MA:0001358 +xref: MESH:A02.835.232.087.911 +xref: NCIT:C12809 +xref: OpenCyc:Mx4rwPtIM5wpEbGdrcN5Y29ycA +xref: UMLS:C0041600 {source="ncithesaurus:Ulna"} +xref: VSAO:0005013 +is_a: UBERON:0003466 ! forelimb zeugopod bone +is_a: UBERON:0003607 ! forelimb long bone +is_a: UBERON:0015003 ! ulna endochondral element +intersection_of: UBERON:0015003 ! ulna endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0006306 {evidence="definitional"} ! ulna cartilage element +relationship: postaxialmost_part_of UBERON:0010703 ! forelimb zeugopod skeleton + +[Term] +id: UBERON:0001425 +name: pectoral lymphatic vessel +subset: vertebrate_core +synonym: "PL" RELATED ABBREVIATION [] +xref: FMA:234865 +xref: TAO:0005107 +xref: ZFA:0005107 +is_a: UBERON:0001473 ! lymphatic vessel +intersection_of: UBERON:0001473 ! lymphatic vessel +intersection_of: part_of UBERON:0001421 ! pectoral girdle region +relationship: part_of UBERON:0001421 ! pectoral girdle region + +[Term] +id: UBERON:0001426 +name: jugular lymphatic vessel +subset: vertebrate_core +synonym: "JL" RELATED ABBREVIATION [] +synonym: "JLV" BROAD ABBREVIATION [ZFA:0005109] +xref: FMA:234908 +xref: TAO:0005109 +xref: ZFA:0005109 +is_a: UBERON:0001473 ! lymphatic vessel +relationship: develops_from UBERON:0011765 ! jugular lymph sac + +[Term] +id: UBERON:0001427 +name: radiale +def: "Endochondral proximal carpal bone articulating with the radius." [https://github.com/obophenotype/uberon/issues/112, UBERON:mah] +subset: pheno_slim +subset: uberon_slim +synonym: "navicular bone of hand" EXACT [] +synonym: "navicular bone of manus" EXACT [] +synonym: "navicular of hand" RELATED [] +synonym: "navicular of manus" EXACT [] +synonym: "os carpi radiale" EXACT [] +synonym: "os naviculare manus" EXACT [http://en.wikipedia.org/wiki/Scaphoid_bone] +synonym: "os scaphoideum" EXACT [http://en.wikipedia.org/wiki/Scaphoid_bone] +synonym: "radial carpal bone" EXACT [] +synonym: "scaphoid" EXACT [http://en.wikipedia.org/wiki/Scaphoid, MA:0002555, NCBITaxon:40674] +synonym: "scaphoid bone" EXACT [] +synonym: "scaphoideum" EXACT [http://en.wikipedia.org/wiki/Scaphoid_bone] +xref: AAO:0000790 +xref: EMAPA:37660 {source="MA:th"} +xref: FMA:23709 +xref: GAID:180 +xref: galen:Scaphoid +xref: http://en.wikipedia.org/wiki/Scaphoid +xref: http://linkedlifedata.com/resource/umls/id/C0223724 +xref: http://www.snomedbrowser.com/Codes/Details/181958008 +xref: MA:0002555 +xref: MESH:A02.835.232.087.144.650 +xref: NCIT:C12854 +xref: OpenCyc:Mx4rwAwWe5wpEbGdrcN5Y29ycA +xref: UMLS:C0223724 {source="ncithesaurus:Scaphoid_Bone"} +is_a: UBERON:0001480 ! proximal carpal bone +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly + +[Term] +id: UBERON:0001428 +name: intermedium +def: "Endochondral carpal bone articulating with the ulnare and the radiale." [https://github.com/obophenotype/uberon/issues/113, UBERON:mah] +subset: pheno_slim +subset: uberon_slim +synonym: "intermediate carpal bone" RELATED [] +synonym: "intermedium" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "lunar" EXACT [VSAO:0005040] +synonym: "lunate" EXACT SENSU [MA:0002556, NCBITaxon:40674] +synonym: "lunate bone" EXACT [] +synonym: "os carpi intermedium" EXACT [] +synonym: "os lunatum" EXACT LATIN [VSAO:0005040] +synonym: "os lunatum" RELATED LATIN [http://en.wikipedia.org/wiki/Lunate_bone] +synonym: "semilunar" RELATED [] +synonym: "semilunar bone" EXACT [] +synonym: "semilunate" RELATED [] +xref: EMAPA:37659 {source="MA:th"} +xref: FMA:23712 +xref: GAID:181 +xref: galen:Lunate +xref: http://linkedlifedata.com/resource/umls/id/C0036624 +xref: http://www.snomedbrowser.com/Codes/Details/181959000 +xref: Lunate:bone +xref: MA:0002556 +xref: MESH:A02.835.232.087.144.663 +xref: NCIT:C12786 +xref: UMLS:C0036624 {source="ncithesaurus:Lunate_Bone"} +xref: VSAO:0005040 +is_a: UBERON:0001480 {source="FMA"} ! proximal carpal bone +relationship: connected_to UBERON:0001427 ! radiale +relationship: connected_to UBERON:0002445 ! ulnare +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly + +[Term] +id: UBERON:0001429 +name: pisiform +def: "A laterally positioned sesamoid bone found in close proximity with and occasionally fused to the ulnare." [https://github.com/obophenotype/uberon/issues/116, PHENOSCAPE:ad] +subset: uberon_slim +synonym: "accessory carpal bone" RELATED [MA:0001339] +synonym: "os pisiforme" RELATED LATIN [http://en.wikipedia.org/wiki/Pisiform_bone] +synonym: "pisiform bone" EXACT [FMA:23718] +xref: EMAPA:36165 +xref: FMA:23718 +xref: galen:Pisiform +xref: http://linkedlifedata.com/resource/umls/id/C0223729 +xref: http://www.snomedbrowser.com/Codes/Details/181966004 +xref: http://www.snomedbrowser.com/Codes/Details/9181003 +xref: MA:0001339 +xref: NCIT:C12855 +xref: OpenCyc:Mx4rvtByTZwpEbGdrcN5Y29ycA +xref: Pisiform:bone +xref: UMLS:C0223729 {source="ncithesaurus:Pisiform_Bone"} +is_a: UBERON:0001480 {source="FMA", source="MA"} ! proximal carpal bone +is_a: UBERON:0007997 ! sesamoid bone of manus +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly + +[Term] +id: UBERON:0001430 +name: distal carpal bone 1 +def: "." [http://en.wikipedia.org/wiki/Trapezium_(bone)] +subset: pheno_slim +subset: uberon_slim +synonym: "carpal 1" RELATED [AAO:0010634] +synonym: "distal carpal 1" EXACT [VSAO:0005043] +synonym: "greater multangular" RELATED [] +synonym: "greater multangular bone" EXACT [] +synonym: "greater multiangular" RELATED [MA:0001340] +synonym: "hand distal carpal bone 1" RELATED [MA:0001340] +synonym: "manus distal carpal bone 1" RELATED [] +synonym: "os trapezium" EXACT [VSAO:0005043] +synonym: "trapezial bone" EXACT [FMA:23721] +synonym: "trapezium" EXACT [VSAO:0005043] +synonym: "trapezium bone" EXACT [FMA:23721] +xref: AAO:0010634 +xref: EMAPA:36173 +xref: FMA:23721 +xref: galen:Trapezium +xref: http://linkedlifedata.com/resource/umls/id/C0223736 +xref: http://www.snomedbrowser.com/Codes/Details/361780007 +xref: MA:0001340 +xref: NCIT:C12857 +xref: OpenCyc:Mx4rv3CbrJwpEbGdrcN5Y29ycA +xref: Trapezium:(bone) +xref: UMLS:C0223736 {source="ncithesaurus:Trapezial_Bone"} +xref: VSAO:0005043 +is_a: UBERON:0001481 {source="FMA"} ! distal carpal bone +is_a: UBERON:0015084 ! distal carpal bone 1 endochondral element +intersection_of: UBERON:0015084 ! distal carpal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015085 ! distal carpal bone 1 cartilage + +[Term] +id: UBERON:0001431 +name: distal carpal bone 2 +def: "." [http://en.wikipedia.org/wiki/Trapezoid_bone] +subset: pheno_slim +subset: uberon_slim +synonym: "carpal 2" RELATED [AAO:0000848] +synonym: "distal carpal 2" EXACT [VSAO:0005044] +synonym: "hand distal carpal bone 2" RELATED [MA:0001341] +synonym: "lesser multangular" RELATED [] +synonym: "lesser multangular bone" EXACT [FMA:23724] +synonym: "lesser multiangular" RELATED [MA:0001341] +synonym: "manus distal carpal bone 2" RELATED [] +synonym: "os trapezoideum" EXACT [VSAO:0005044] +synonym: "trapezoid" EXACT [VSAO:0005044] +synonym: "trapezoid bone" EXACT [FMA:23724] +xref: AAO:0000848 +xref: EMAPA:36174 +xref: FMA:23724 +xref: galen:Trapezoid +xref: http://linkedlifedata.com/resource/umls/id/C0223741 +xref: http://www.snomedbrowser.com/Codes/Details/361781006 +xref: MA:0001341 +xref: NCIT:C12859 +xref: OpenCyc:Mx4rvVvsjpwpEbGdrcN5Y29ycA +xref: OpenCyc:Mx4rvxNWBJwpEbGdrcN5Y29ycA +xref: Trapezoid:bone +xref: UMLS:C0223741 {source="ncithesaurus:Trapezoid_Bone"} +xref: VSAO:0005044 +is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015087 ! distal carpal bone 2 endochondral element +intersection_of: UBERON:0015087 ! distal carpal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015088 ! distal carpal bone 2 cartilage + +[Term] +id: UBERON:0001432 +name: distal carpal bone 3 +def: "." [http://en.wikipedia.org/wiki/Capitate_bone] +subset: pheno_slim +subset: uberon_slim +synonym: "capitate" EXACT [MA:0001342] +synonym: "capitate bone" EXACT [FMA:23727] +synonym: "carpal 3" RELATED [AAO:0000849] +synonym: "distal carpal 3" EXACT [VSAO:0005045] +synonym: "hand distal carpal bone 3" RELATED [MA:0001342] +synonym: "magnum" RELATED [VSAO:0005045] +synonym: "os capitatum" RELATED [http://en.wikipedia.org/wiki/Capitate_bone] +synonym: "os magnum" RELATED [] +synonym: "os magnum (carpus)" EXACT [FMA:23727] +xref: AAO:0000849 +xref: Capitate:bone +xref: EMAPA:36169 +xref: FMA:23727 +xref: galen:Capitate +xref: http://linkedlifedata.com/resource/umls/id/C0223733 +xref: http://www.snomedbrowser.com/Codes/Details/181964001 +xref: MA:0001342 +xref: NCIT:C12856 +xref: OpenCyc:Mx4rvZFPrZwpEbGdrcN5Y29ycA +xref: UMLS:C0223733 {source="ncithesaurus:Capitate_Bone"} +xref: VSAO:0005045 +is_a: UBERON:0001481 {source="FMA", source="palaeos"} ! distal carpal bone +is_a: UBERON:0015090 ! distal carpal bone 3 endochondral element +intersection_of: UBERON:0015090 ! distal carpal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015091 ! distal carpal bone 3 cartilage + +[Term] +id: UBERON:0001433 +name: distal carpal bone 4 +def: "." [http://en.wikipedia.org/wiki/Hamate_bone] +subset: pheno_slim +subset: uberon_slim +synonym: "carpal 4" RELATED [AAO:0000850] +synonym: "distal carpal 4" EXACT [VSAO:0005046] +synonym: "hamate" EXACT [MA:0001343] +synonym: "hamate bone" EXACT [FMA:23730] +synonym: "hand distal carpal bone 4" RELATED [MA:0001343] +synonym: "os hamatum" RELATED LATIN [http://en.wikipedia.org/wiki/Hamate_bone] +synonym: "os hamatum" RELATED [VSAO:0005046] +synonym: "unciform" RELATED [MA:0001343] +synonym: "unciform bone" EXACT [FMA:23730] +synonym: "uncinate" RELATED [MA:0001343] +xref: AAO:0000850 +xref: EMAPA:36172 +xref: FMA:23730 +xref: galen:Hamate +xref: Hamate:bone +xref: http://linkedlifedata.com/resource/umls/id/C0560737 +xref: http://www.snomedbrowser.com/Codes/Details/181967008 +xref: MA:0001343 +xref: NCIT:C12860 +xref: OpenCyc:Mx4rwFTmuJwpEbGdrcN5Y29ycA +xref: UMLS:C0560737 {source="ncithesaurus:Hamate_Bone"} +xref: VSAO:0005046 +is_a: UBERON:0001481 {source="FMA"} ! distal carpal bone +is_a: UBERON:0015093 ! distal carpal bone 4 endochondral element +intersection_of: UBERON:0015093 ! distal carpal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015094 ! distal carpal bone 4 cartilage + +[Term] +id: UBERON:0001434 +name: skeletal system +def: "Anatomical system that is a multi-element, multi-tissue anatomical cluster that consists of the skeleton and the articular system." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000027] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "set of all bones and joints" NARROW SENSU [] +synonym: "skeleton system" EXACT [] +synonym: "Skelettsystem" RELATED [BTO:0001486] +xref: AAO:0000566 +xref: BTO:0001486 +xref: CALOHA:TS-1320 +xref: EFO:0000806 +xref: EHDAA2:0003168 +xref: EMAPA:35773 +xref: FMA:23881 +xref: http://linkedlifedata.com/resource/umls/id/C0037253 +xref: MA:0000018 +xref: NCIT:C12788 +xref: OpenCyc:Mx4rvVi1rpwpEbGdrcN5Y29ycA +xref: TAO:0000434 +xref: UMLS:C0037253 {source="ncithesaurus:Skeletal_System"} +xref: VHOG:0001254 +xref: VSAO:0000027 +xref: XAO:0003060 +xref: ZFA:0000434 +is_a: UBERON:0011216 ! organ system subdivision +intersection_of: UBERON:0011216 ! organ system subdivision +intersection_of: has_part UBERON:0004288 ! skeleton +intersection_of: has_part UBERON:0004770 ! articular system +disjoint_from: UBERON:0001474 ! bone element +disjoint_from: UBERON:0002204 ! musculoskeletal system +disjoint_from: UBERON:0002294 ! biliary system +disjoint_from: UBERON:0002330 ! exocrine system +disjoint_from: UBERON:0002390 ! hematopoietic system +disjoint_from: UBERON:0002405 ! immune system +disjoint_from: UBERON:0002416 ! integumental system +disjoint_from: UBERON:0002423 ! hepatobiliary system +disjoint_from: UBERON:0004456 ! entire sense organ system +relationship: existence_ends_during UBERON:0000066 ! fully formed stage +relationship: has_part UBERON:0004288 ! skeleton +relationship: has_part UBERON:0004770 ! articular system +relationship: part_of UBERON:0002204 ! musculoskeletal system + +[Term] +id: UBERON:0001435 +name: carpal bone +def: "A bone that is part of the carpal skeleton. Examples: scaphoid, lunate, capitate[cjm]." [https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "bone of carpus" EXACT [] +synonym: "carpal" EXACT [PHENOSCAPE:ad] +synonym: "carpal skeleton bone" EXACT [] +synonym: "carpus bone" RELATED [EMAPA:25056] +xref: EMAPA:25056 +xref: FMA:23889 +xref: GAID:179 +xref: galen:CarpalBone +xref: http://en.wikipedia.org/wiki/Carpus +xref: http://linkedlifedata.com/resource/umls/id/C0007285 +xref: http://www.snomedbrowser.com/Codes/Details/83936004 +xref: MA:0000296 +xref: MESH:A02.835.232.087.144 +xref: NCIT:C12688 +xref: UMLS:C0007285 {source="ncithesaurus:Carpal_Bone"} +is_a: UBERON:0003656 ! mesopodium bone +is_a: UBERON:0005897 ! manus bone +is_a: UBERON:0015049 ! carpus endochondral element +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0004452 ! carpal region +disjoint_from: UBERON:0012358 ! manual digitopodium bone +relationship: develops_from UBERON:0006213 ! carpus cartilage element + +[Term] +id: UBERON:0001436 +name: phalanx of manus +def: "A phalanx that is part of a forelimb autopod[Automatically generated definition]." [http://en.wikipedia.org/wiki/Phalanges_of_the_hand, https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "bone of finger" RELATED [FMA:23914] +synonym: "digital bone of manus" NARROW [OBOL:automatic] +synonym: "digitus manus phalanx" EXACT [OBOL:automatic] +synonym: "finger phalanx" EXACT [OBOL:automatic] +synonym: "hand digit phalanx" EXACT [OBOL:automatic] +synonym: "hand phalanx" EXACT [MA:0000306] +synonym: "manual phalanx" EXACT [] +synonym: "phalanges of fore digit" RELATED PLURAL [AAO:0000947] +synonym: "phalanx of digit of hand" EXACT [OBOL:automatic] +synonym: "phalanx of digitus manus" EXACT [OBOL:automatic] +synonym: "phalanx of finger" EXACT [FMA:23914] +synonym: "phalanx of fore digit" EXACT [] +synonym: "phalanx of hand" EXACT [] +synonym: "phalanx of hand digit" EXACT [OBOL:automatic] +synonym: "phalanx of manual digit" EXACT [] +xref: AAO:0000947 +xref: EMAPA:32650 +xref: FMA:23914 +xref: http://en.wikipedia.org/wiki/Phalanges_of_the_hand +xref: http://linkedlifedata.com/resource/umls/id/C0223792 +xref: http://mbe.oxfordjournals.org/content/26/3/613/F1.large.jpg +xref: http://www.snomedbrowser.com/Codes/Details/181976001 +xref: http://www.snomedbrowser.com/Codes/Details/361100001 +xref: MA:0000306 +xref: NCIT:C52771 +xref: UMLS:C0223792 {source="ncithesaurus:Hand_Phalanx"} +is_a: UBERON:0003221 ! phalanx +is_a: UBERON:0003607 ! forelimb long bone +is_a: UBERON:0004249 ! manual digit bone +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: UBERON:0003221 ! phalanx +intersection_of: part_of UBERON:0002389 ! manual digit +relationship: develops_from UBERON:0010686 ! manual digit phalanx cartilage element + +[Term] +id: UBERON:0001437 +name: epiphysis +def: "The head of a long bone that articulates with a neighboring skeletal element and is separated from the shaft by the epiphyseal plate until bone growth stops. At that time, the plate disappears and the head and shaft are united[MESH,modified]." [http://orcid.org/0000-0002-6601-2165, MESH:A02.835.232.251] +subset: pheno_slim +subset: uberon_slim +synonym: "bone epiphysis" EXACT [] +synonym: "end of long bone" EXACT [] +synonym: "epiphyses" EXACT PLURAL [] +synonym: "long bone epiphysis" EXACT [] +xref: AAO:0000742 +xref: BTO:0000413 +xref: EMAPA:35508 +xref: FMA:24012 +xref: http://en.wikipedia.org/wiki/Epiphysis +xref: http://linkedlifedata.com/resource/umls/id/C1708734 +xref: http://www.snomedbrowser.com/Codes/Details/244701002 +xref: MA:0001362 +xref: MESH:D004838 +xref: NCIT:C32529 +xref: NCIT:C52722 +xref: UMLS:C1708734 {source="ncithesaurus:Long_Bone_Epiphysis"} +is_a: UBERON:0005055 ! zone of long bone +relationship: contributes_to_morphology_of UBERON:0002495 ! long bone +relationship: seeAlso UBERON:0006776 ! annular epiphysis + +[Term] +id: UBERON:0001438 +name: metaphysis +def: "Zone of long bone that is between the epiphysis and diaphysis. Subdivision of diaphysis which forms the proximal or distal end of diaphysis next to the epiphysis; together with diaphysis proper, it constitutes the diaphysis. Examples: proximal metaphysis of humerus, distal metaphysis of femur.[FMA]" [FMA:24014, http://en.wikipedia.org/wiki/Metaphysis] +subset: pheno_slim +subset: uberon_slim +synonym: "diaphyseal end of long bone" EXACT [] +synonym: "long bone metaphysis" EXACT [] +synonym: "metaphyses" EXACT PLURAL [] +xref: EMAPA:35509 +xref: FMA:24014 +xref: http://en.wikipedia.org/wiki/Metaphysis +xref: http://linkedlifedata.com/resource/umls/id/C0222671 +xref: http://www.snomedbrowser.com/Codes/Details/304581004 +xref: MA:0001363 +xref: NCIT:C52723 +xref: UMLS:C0222671 {source="ncithesaurus:Metaphysis"} +is_a: UBERON:0005055 ! zone of long bone +relationship: adjacent_to UBERON:0006861 ! diaphysis proper +relationship: contributes_to_morphology_of UBERON:0002495 ! long bone +relationship: part_of UBERON:0004769 ! diaphysis + +[Term] +id: UBERON:0001439 +name: compact bone tissue +def: "the outer layers of solid, hard bone that covers spongy bone; consists of parallel osteons containing mineral deposits and interstitial lamellae" [ISBN:0-683-40008-8, MGI:hdene, MP:0003797] +comment: MP distinguishes compact/cortical bone. in other AOs they are syns +subset: pheno_slim +subset: uberon_slim +synonym: "bony cortex" EXACT [HP:0002753] +synonym: "compact bone" EXACT [MA:0001461] +synonym: "compact bone tissue" EXACT [] +synonym: "cortical bone" EXACT [] +synonym: "cortical bone tissue" EXACT [] +synonym: "cortical region of bone" EXACT [] +synonym: "substantia compacta" EXACT LATIN [FMA:24018, FMA:TA] +synonym: "substantia compacta (pars ossea)" EXACT [] +synonym: "substantia corticalis" EXACT LATIN [FMA:24018, FMA:TA] +xref: Compact:bone +xref: EMAPA:35250 +xref: FMA:24018 +xref: galen:CorticalBone +xref: http://linkedlifedata.com/resource/umls/id/C0222661 +xref: http://www.snomedbrowser.com/Codes/Details/361728003 +xref: MA:0001461 +xref: NCIT:C52714 +xref: UMLS:C0222661 {source="ncithesaurus:Cortical_Bone"} +is_a: UBERON:0002481 ! bone tissue +disjoint_from: UBERON:0002483 ! trabecular bone tissue +relationship: part_of UBERON:0002482 ! lamellar bone + +[Term] +id: UBERON:0001440 +name: forelimb skeleton +def: "The collection of all skeletal elements in a free forelimb region. Excludes the pectoral girdle" [https://orcid.org/0000-0002-6601-2165] +synonym: "bones of upper limb" EXACT [] +synonym: "fore limb skeleton" EXACT [] +synonym: "forelimb skeleton" EXACT [VHOG:0001256] +synonym: "free upper limb skeleton" EXACT [FMA:24142] +synonym: "ossa membri superioris" EXACT LATIN [FMA:24139, FMA:TA] +synonym: "pectoral limb skeleton" EXACT [] +synonym: "set of bones of upper limb" EXACT [] +synonym: "skeleton of forelimb" EXACT [] +synonym: "skeleton of free upper limb" EXACT [FMA:24142] +synonym: "skeleton of pectoral limb" EXACT [] +synonym: "skeleton of upper limb" EXACT [FMA:24139] +synonym: "upper limb skeleton" EXACT [EHDAA2:0002222] +synonym: "wing skeleton" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +xref: AAO:0000202 +xref: EHDAA2:0002222 +xref: EMAPA:32623 +xref: FMA:24142 +xref: VHOG:0001256 +xref: VSAO:0000151 +xref: XAO:0003061 +is_a: UBERON:0004381 ! skeleton of limb +is_a: UBERON:0007272 ! pectoral appendage skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0002102 ! forelimb +relationship: part_of UBERON:0002102 {source="FMA"} ! forelimb +relationship: part_of UBERON:0012475 ! skeleton of pectoral complex +relationship: proximally_connected_to UBERON:0007831 ! pectoral girdle skeleton +relationship: skeleton_of UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0001441 +name: hindlimb skeleton +def: "Subdivision of skeleton consisting of all skeletal elements in an hindlimb region." [https://orcid.org/0000-0002-6601-2165] +comment: TOOD - find a home for: FMA:24140 +subset: uberon_slim +synonym: "bones of lower limb" EXACT [] +synonym: "free lower limb skeleton" EXACT [FMA:24144] +synonym: "hind limb skeleton" EXACT [XAO:0003062] +synonym: "hind-limb skeleton" EXACT [VSAO:0000152] +synonym: "hindlimb skeleton" EXACT [VHOG:0001255] +synonym: "lower limb skeleton" EXACT [] +synonym: "ossa membri inferioris" EXACT LATIN [FMA:24140, FMA:TA] +synonym: "set of bones of lower limb" EXACT [] +synonym: "skeleton of free lower limb" EXACT [FMA:24144] +synonym: "skeleton of lower limb" EXACT [FMA:24140] +xref: AAO:0000217 +xref: EHDAA2:0002226 +xref: EMAPA:32633 +xref: FMA:24144 +xref: OpenCyc:Mx4rvZcKkZwpEbGdrcN5Y29ycA +xref: VHOG:0001255 +xref: VSAO:0000152 +xref: XAO:0003062 +is_a: UBERON:0004381 ! skeleton of limb +is_a: UBERON:0007273 ! pelvic appendage skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0002103 ! hindlimb +relationship: part_of UBERON:0002103 {source="FMA"} ! hindlimb +relationship: part_of UBERON:0012476 ! skeleton of pelvic complex +relationship: proximally_connected_to UBERON:0007832 ! pelvic girdle skeleton +relationship: skeleton_of UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0001442 +name: skeleton of manus +def: "Subdivision of skeleton that is the collection of all skeletal elements in a manus, which is the distal section of the anterior forelimb skeleton consisting of the mesopodium, the metapodium and the acropodium (e.g. including the wrist, palm, and fingers)[Phenoscape]." [https://github.com/obophenotype/uberon/issues/74, https://orcid.org/0000-0002-6601-2165, PHENOSCAPE:MAH] +comment: here 'manus' includes both the wrist region, metatarsal region and acropodial region +subset: pheno_slim +synonym: "anterior autopodium" RELATED [VSAO:0005020, VSAO:NI] +synonym: "anterior autopodium skeleton" EXACT [] +synonym: "bones of hand" EXACT [FMA:24159] +synonym: "fore autopod skeleton" EXACT [] +synonym: "forelimb autopod skeleton" EXACT [] +synonym: "hand region skeleton" EXACT [EHDAA2:0002227] +synonym: "hand skeleton" EXACT [FMA:24159] +synonym: "manual skeleton" EXACT [] +synonym: "manus" RELATED [VSAO:0005020, VSAO:NI] +synonym: "manus skeleton" EXACT [] +synonym: "ossa manus" EXACT LATIN [FMA:24159, FMA:TA] +synonym: "set of bones of hand" EXACT [FMA:24159] +synonym: "skeleton of hand" EXACT [FMA:24159] +xref: EHDAA2:0002227 +xref: EMAPA:32643 +xref: FMA:24159 +xref: OpenCyc:Mx4rvdHPJJwpEbGdrcN5Y29ycA +xref: VSAO:0005020 +is_a: UBERON:0006717 ! autopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0002398 ! manus +disjoint_from: UBERON:0001445 {source="lexical"} ! skeleton of pes +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +relationship: part_of UBERON:0001440 {source="EHDAA2"} ! forelimb skeleton +relationship: part_of UBERON:0002398 ! manus +relationship: skeleton_of UBERON:0002398 ! manus + +[Term] +id: UBERON:0001443 +name: chest +def: "Subdivision of trunk proper, which is demarcated from the neck by the plane of the superior thoracic aperture and from the abdomen internally by the inferior surface of the diaphragm and externally by the costal margin and associated with the thoracic vertebral column and ribcage and from the back of the thorax by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines; together with the abdomen and the perineum, it constitutes the trunk proper[FMA]." [FMA:9576, http://en.wikipedia.org/wiki/Chest] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "anterolateral part of thorax" EXACT [] +synonym: "front of thorax" EXACT [] +synonym: "pectus" EXACT LATIN [FMA:24816, FMA:TA] +synonym: "thoracic body wall" RELATED [MA:0000031] +synonym: "thorax" RELATED LATIN [http://en.wikipedia.org/wiki/Chest] +synonym: "thorax" RELATED [FMA:9576] +synonym: "ventral part of thoracic region" EXACT [] +xref: BTO:0001368 +xref: CALOHA:TS-1039 +xref: EFO:0000965 +xref: EMAPA:37232 {source="MA:th"} +xref: EV:0100010 +xref: FMA:9576 +xref: GAID:91 +xref: galen:Chest +xref: galen:Thorax +xref: http://en.wikipedia.org/wiki/Chest +xref: http://linkedlifedata.com/resource/umls/id/C0817096 +xref: http://linkedlifedata.com/resource/umls/id/C1527391 +xref: MA:0000031 +xref: MAT:0000295 +xref: MESH:A01.911 +xref: MIAA:0000295 +xref: NCIT:C12799 +xref: NCIT:C25389 +xref: OpenCyc:Mx4rvVikFZwpEbGdrcN5Y29ycA +xref: UMLS:C0817096 {source="ncithesaurus:Thorax"} +xref: UMLS:C1527391 {source="ncithesaurus:Chest"} +is_a: UBERON:0009569 {source="FMA-modified"} ! subdivision of trunk +relationship: part_of UBERON:0000915 {source="FMA", source="MA"} ! thoracic segment of trunk + +[Term] +id: UBERON:0001444 +name: subdivision of head +subset: non_informative +synonym: "head region" RELATED [] +synonym: "head subdivision" EXACT [] +synonym: "region of head" RELATED [] +xref: FMA:24218 +xref: http://www.snomedbrowser.com/Codes/Details/123852005 +xref: XAO:0000040 +is_a: UBERON:0000475 ! organism subdivision +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0001445 +name: skeleton of pes +def: "Subdivision of skeleton that is the collection of all skeletal elements in a pes, which is the distal section of the posterior hindlimb skeleton consisting of the mesopodium, the metapodium and the acropodium (e.g. including the ankle, sole, and toes)[Phenoscape]." [https://github.com/obophenotype/uberon/issues/75, https://orcid.org/0000-0002-6601-2165, PHENOSCAPE:MAH] +comment: here 'pes' includes both the ankle region, metatarsals and acropodial region +subset: pheno_slim +synonym: "foot region skeleton" EXACT [EHDAA2:0002228] +synonym: "foot skeleton" EXACT [FMA:24222] +synonym: "pedal skeleton" EXACT [] +synonym: "pes" RELATED INCONSISTENT [VSAO:0005021, VSAO:NI] +synonym: "pes skeleton" EXACT [] +synonym: "posterior autopodium" RELATED [VSAO:0005021, VSAO:NI] +synonym: "posterior autopodium skeleton" EXACT [] +synonym: "set of bones of foot" EXACT [FMA:24222] +synonym: "skeleton of foot" EXACT [FMA:24222] +xref: EHDAA2:0002228 +xref: FMA:24222 +xref: VSAO:0005021 +is_a: UBERON:0006717 ! autopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0002387 ! pes +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +relationship: part_of UBERON:0001441 {source="EHDAA2"} ! hindlimb skeleton +relationship: part_of UBERON:0002387 ! pes +relationship: skeleton_of UBERON:0002387 ! pes + +[Term] +id: UBERON:0001446 +name: fibula +def: "The major postaxial endochondral bone in the posterior zeugopod[Phenoscape]." [PHENOSCAPE:mah] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +xref: AAO:0000891 +xref: BTO:0002346 +xref: CALOHA:TS-2203 +xref: EFO:0003052 +xref: EMAPA:19141 +xref: FMA:24479 +xref: GAID:202 +xref: galen:Fibula +xref: http://en.wikipedia.org/wiki/Fibula +xref: http://linkedlifedata.com/resource/umls/id/C0016068 +xref: http://www.snomedbrowser.com/Codes/Details/302529003 +xref: MA:0001360 +xref: MESH:A02.835.232.500.321 +xref: NCIT:C12718 +xref: UMLS:C0016068 {source="ncithesaurus:Fibula"} +is_a: UBERON:0003608 ! hindlimb long bone +is_a: UBERON:0004251 ! hindlimb zeugopod bone +is_a: UBERON:0015013 ! fibula endochondral element +intersection_of: UBERON:0015013 ! fibula endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010851 ! fibula cartilage element +relationship: postaxialmost_part_of UBERON:0010720 ! hindlimb zeugopod skeleton + +[Term] +id: UBERON:0001447 +name: tarsal bone +def: "A bone that is part of the tarsal skeleton. Examples: calcaneus, talus, centralia." [https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "ankle bone" EXACT [FMA:24491] +synonym: "bone of ankle" EXACT [FMA:24491] +synonym: "bone of tarsal skeleton" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "bone of tarsus" EXACT [FMA:24491] +synonym: "bony tarsus" RELATED [BTO:0002343] +synonym: "hind mesopodium" RELATED [AAO:0000220] +synonym: "ossa tarsalia" EXACT PLURAL [FMA:71339, FMA:TA] +synonym: "ossa tarsi" EXACT PLURAL [FMA:71339, FMA:TA] +synonym: "tarsal" RELATED [BTO:0002343] +synonym: "tarsus osseus" RELATED [BTO:0002343] +xref: BTO:0002343 +xref: EMAPA:25072 +xref: FMA:24491 +xref: GAID:194 +xref: galen:TarsalBone +xref: http://linkedlifedata.com/resource/umls/id/C0039316 +xref: http://www.snomedbrowser.com/Codes/Details/108372004 +xref: MA:0000297 +xref: MESH:A02.835.232.300.710 +xref: NCIT:C12796 +xref: UMLS:C0039316 {source="ncithesaurus:Tarsal_Bone"} +is_a: UBERON:0003656 ! mesopodium bone +is_a: UBERON:0005899 ! pes bone +is_a: UBERON:0015050 ! tarsus endochondral element +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0004454 ! tarsal region +disjoint_from: UBERON:0012359 ! pedal digitopodium bone +relationship: develops_from UBERON:0010541 ! tarsus cartilage element + +[Term] +id: UBERON:0001448 +name: metatarsal bone +def: "The metatarsus or metatarsal bones are a group of five long bones in the pes located between the tarsal bones of the hind- and mid-pes and the phalanges of the toes. Lacking individual names, the metatarsal bones are numbered from the medial side (side of big toe): the first, second, third, fourth, and fifth metatarsal. The metatarsals are analogous to the metacarpal bones of the manus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Metatarsal_bone] +subset: pheno_slim +subset: uberon_slim +synonym: "metatarsal" EXACT [] +synonym: "ossa metatarsalia" RELATED PLURAL [BTO:0002347] +synonym: "ossa metatarsi" RELATED [BTO:0002347] +xref: BTO:0002347 +xref: EMAPA:32940 +xref: EMAPA:36159 +xref: FMA:24492 +xref: GAID:193 +xref: galen:Metatarsal +xref: http://linkedlifedata.com/resource/umls/id/C0025584 +xref: http://www.snomedbrowser.com/Codes/Details/302532000 +xref: MA:0000303 +xref: MESH:A02.835.232.300.492 +xref: Metatarsal:bone +xref: NCIT:C12752 +xref: UMLS:C0025584 {source="ncithesaurus:Metatarsal_Bone"} +is_a: UBERON:0003608 ! hindlimb long bone +is_a: UBERON:0003821 {is_inferred="true"} ! metapodium bone +is_a: UBERON:0012359 ! pedal digitopodium bone +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0000983 ! metatarsus region +relationship: connected_to UBERON:0001447 ! tarsal bone +relationship: connected_to UBERON:0001449 ! phalanx of pes +relationship: part_of UBERON:0010545 ! metatarsus skeleton + +[Term] +id: UBERON:0001449 +name: phalanx of pes +alt_id: UBERON:0004272 +def: "A phalanx that is part of a hindlimb autopod[Automatically generated definition]." [http://en.wikipedia.org/wiki/Phalanges_of_the_foot, https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "bone of toe" RELATED [FMA:24493] +synonym: "digital bone of pes" BROAD [OBOL:automatic] +synonym: "digitus pedis phalanx" EXACT [OBOL:automatic] +synonym: "foot digit phalanx" EXACT [OBOL:automatic] +synonym: "foot phalanx" EXACT [MA:0000305] +synonym: "pedal phalanx" EXACT [] +synonym: "phalanges of hind digit" RELATED PLURAL [AAO:0000930] +synonym: "phalanx of digit of foot" EXACT [OBOL:automatic] +synonym: "phalanx of digitus pedis" EXACT [OBOL:automatic] +synonym: "phalanx of foot digit" EXACT [OBOL:automatic] +synonym: "phalanx of hind digit" EXACT [] +synonym: "phalanx of pes" EXACT [] +synonym: "phalanx of toe" EXACT [FMA:24493] +synonym: "toe phalanx" EXACT [OBOL:automatic] +xref: AAO:0000930 +xref: EMAPA:32941 +xref: FMA:24493 +xref: http://en.wikipedia.org/wiki/Phalanges_of_the_foot +xref: http://linkedlifedata.com/resource/umls/id/C0584876 +xref: http://www.snomedbrowser.com/Codes/Details/302533005 +xref: MA:0000305 +xref: NCIT:C52772 +xref: ncithesaurus:Phalanx_of_the_Foot +xref: UMLS:C0584876 {source="ncithesaurus:Foot_Phalanx"} +is_a: UBERON:0003221 ! phalanx +is_a: UBERON:0003608 ! hindlimb long bone +is_a: UBERON:0004248 ! pedal digit bone +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: UBERON:0003221 ! phalanx +intersection_of: part_of UBERON:0002387 ! pes +relationship: develops_from UBERON:0010685 ! pedal digit phalanx cartilage element + +[Term] +id: UBERON:0001450 +name: calcaneus +def: "The postaxial bone of the proximal tarsals series[Phenoscape]." [https://github.com/obophenotype/uberon/issues/72, PHENOSCAPE:mah] +subset: pheno_slim +subset: uberon_slim +synonym: "calcaneal bone" EXACT [BTO:0002355] +synonym: "calcanei" RELATED PLURAL [] +synonym: "calcaneum" EXACT [MA:0001348] +synonym: "calcaneus bone" EXACT [UBERON:cjm] +synonym: "fibulare" RELATED [AAO:0000913, http://en.wikipedia.org/wiki/Calcaneus, ISBN:0073040584, VSAO:0005016] +synonym: "heel bone" RELATED [BTO:0002355] +synonym: "os calcis" EXACT LATIN [FMA:24496] +synonym: "os tarsi fibulare" RELATED [BTO:0002355] +xref: BTO:0002355 +xref: EMAPA:19134 +xref: FMA:24496 +xref: galen:Calcaneum +xref: http://en.wikipedia.org/wiki/Calcaneus +xref: http://linkedlifedata.com/resource/umls/id/C0006655 +xref: http://www.snomedbrowser.com/Codes/Details/182099002 +xref: MA:0001348 +xref: MESH:A02.835.232.300.710.300 +xref: NCIT:C32250 +xref: UMLS:C0006655 {source="ncithesaurus:Calcaneum"} +xref: VSAO:0005016 +is_a: UBERON:0011679 ! proximal tarsal bone +is_a: UBERON:0015014 ! calcaneum endochondral element +intersection_of: UBERON:0015014 ! calcaneum endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +property_value: dc-contributor https://github.com/alex-dececchi +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +relationship: develops_from UBERON:0010842 ! calcaneum cartilage element +relationship: postaxialmost_part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0001451 +name: navicular bone of pes +def: "the oval-shaped tarsal bone found between the talus and the 3 cuneiform bones" [MGI:llw2, MP:0009727] +subset: pheno_slim +subset: uberon_slim +synonym: "central tarsal bone" RELATED [] +synonym: "centrale" BROAD [] +synonym: "centrale (hind)" EXACT [AAO:0000924] +synonym: "navicular" EXACT [] +synonym: "navicular bone of foot" EXACT [FMA:24499] +synonym: "navicular of foot" EXACT [FMA:24499] +synonym: "navicular of pes" EXACT [] +synonym: "os naviculare" EXACT LATIN [FMA:24499, FMA:TA] +synonym: "os naviculare" RELATED LATIN [http://en.wikipedia.org/wiki/Navicular_bone] +synonym: "os naviculare pedis" EXACT [BTO:0002356] +synonym: "os tarsi centrale" EXACT LATIN [NominaAnatomicaVeterinaria:2005] +xref: AAO:0000924 +xref: BTO:0002356 +xref: EMAPA:36180 +xref: FMA:24499 +xref: galen:Navicular +xref: http://linkedlifedata.com/resource/umls/id/C0223947 +xref: http://www.snomedbrowser.com/Codes/Details/182100005 +xref: MA:0001349 +xref: Navicular:bone +xref: NCIT:C33162 +xref: OpenCyc:Mx4rv67esJwpEbGdrcN5Y29ycA +xref: UMLS:C0223947 {source="ncithesaurus:Navicular_Bone"} +is_a: UBERON:0001447 ! tarsal bone +is_a: UBERON:0012131 ! centrale +relationship: distally_connected_to UBERON:0010721 {notes="numbers vary"} ! distal tarsal bone +relationship: proximally_connected_to UBERON:0002395 ! talus + +[Term] +id: UBERON:0001452 +name: distal tarsal bone 1 +def: "Endochondral tarsal bone articulating with centralia and metatarsal 1." [http://en.wikipedia.org/wiki/Medial_cuneiform_bone, VSAO:0005052] +subset: uberon_slim +synonym: "1st cuneiform" RELATED [EMAPA:36176] +synonym: "cuneiforme 1" EXACT [VSAO:0005052] +synonym: "distal tarsal 1" RELATED [VSAO:0005052] +synonym: "distal tarsal 1 bone" EXACT SYSTEMATIC [UBERON:cjm] +synonym: "entocuneiforme" EXACT [VSAO:0005052] +synonym: "first cuneiform" EXACT [http://en.wikipedia.org/wiki/Medial_cuneiform_bone] +synonym: "first cuneiform bone" EXACT [FMA:24518] +synonym: "foot distal carpal bone 1" RELATED [] +synonym: "medial cuneiform" EXACT [FMA:24518] +synonym: "medial cuneiform bone" EXACT [FMA:24518] +synonym: "os cuneiform primum" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_cuneiform_bone] +synonym: "os cuneiforme mediale" EXACT LATIN [FMA:TA] +synonym: "os cuneiforme mediale" EXACT LATIN [NominaAnatomicaVeterinaria:2005] +synonym: "os cuneiforme mediale" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_cuneiform_bone] +synonym: "os cuneiforme primum" RELATED [BTO:0002360] +synonym: "os tarsale I" EXACT LATIN [NominaAnatomicaVeterinaria:2005] +synonym: "ossa cuneiforme mediale" RELATED [BTO:0002360] +synonym: "tarsal 1" EXACT [AAO:0000918] +xref: AAO:0000918 +xref: BTO:0002360 +xref: EMAPA:36176 +xref: FMA:24518 +xref: galen:MedialCuneiform +xref: http://en.wikipedia.org/wiki/Medial_cuneiform_bone +xref: http://linkedlifedata.com/resource/umls/id/C1512869 +xref: http://palaeos.com/vertebrates/glossary/images/450x218xEctocuneiform.gif.pagespeed.ic.kaiuLYQELL.png +xref: http://www.snomedbrowser.com/Codes/Details/182116007 +xref: MA:0001352 +xref: NCIT:C32840 +xref: OpenCyc:Mx4rvYtfH5wpEbGdrcN5Y29ycA +xref: UMLS:C1512869 {source="ncithesaurus:Internal_Cuneiform_Bone_of_the_Foot"} +xref: VSAO:0005052 +is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015102 ! distal tarsal bone 1 endochondral element +intersection_of: UBERON:0015102 ! distal tarsal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +disjoint_from: UBERON:0001454 {source="lexical"} ! distal tarsal bone 3 +relationship: develops_from UBERON:0015103 ! distal tarsal bone 1 cartilage +relationship: distally_connected_to UBERON:0003650 ! metatarsal bone of digit 1 +relationship: proximally_connected_to UBERON:0001451 ! navicular bone of pes + +[Term] +id: UBERON:0001453 +name: distal tarsal bone 2 +def: "Endochondral tarsal bone articulating with centralia and metatarsal 2." [http://en.wikipedia.org/wiki/Intermediate_cuneiform_bone, VSAO:0005053] +comment: The intermediate cuneiform (also known as second cuneiform / middle cuneiform) is shaped like a wedge, the thin end pointing downwards. It is situated between the other two cuneiforms (the medial and lateral cuneiforms), and articulates with the navicular posteriorly, the second metatarsal anteriorly and with the other cuneiforms on either side. [WP,unvetted] +subset: uberon_slim +synonym: "2nd cuneiform" RELATED [EMAPA:36177] +synonym: "cuneiforme 2" EXACT [VSAO:0005053] +synonym: "distal tarsal 2" RELATED [VSAO:0005053] +synonym: "distal tarsal 2 bone" EXACT SYSTEMATIC [UBERON:cjm] +synonym: "foot distal carpal bone 2" RELATED [] +synonym: "intermediate cuneiform" EXACT [] +synonym: "intermediate cuneiform bone" RELATED [FMA:24519] +synonym: "mesocuneiforme" EXACT [VSAO:0005053] +synonym: "middle cuneiform" EXACT [] +synonym: "middle cuneiform bone of foot" EXACT [] +synonym: "os cuneiforme intermedium" EXACT LATIN [NominaAnatomicaVeterinaria:2005] +synonym: "os cuneiforme intermedium" RELATED LATIN [http://en.wikipedia.org/wiki/Intermediate_cuneiform_bone] +synonym: "os cuneiforme intermedium" RELATED [BTO:0002359] +synonym: "os cuneiforme secundum" RELATED LATIN [http://en.wikipedia.org/wiki/Intermediate_cuneiform_bone] +synonym: "os cuneiforme secundum" RELATED [BTO:0002359] +synonym: "os tarsale II" EXACT LATIN [NominaAnatomicaVeterinaria:2005] +synonym: "second cuneiform bone" EXACT [] +synonym: "second cuneiform bone of foot" EXACT [] +synonym: "tarsal 2" EXACT [AAO:0000919] +xref: AAO:0000919 +xref: BTO:0002359 +xref: EMAPA:36177 +xref: FMA:24519 +xref: galen:IntermediateCuneiform +xref: http://en.wikipedia.org/wiki/Intermediate_cuneiform_bone +xref: http://linkedlifedata.com/resource/umls/id/C1513292 +xref: http://www.snomedbrowser.com/Codes/Details/179512006 +xref: MA:0001353 +xref: NCIT:C33116 +xref: UMLS:C1513292 {source="ncithesaurus:Middle_Cuneiform_Bone_of_the_Foot"} +xref: VSAO:0005053 +is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015105 ! distal tarsal bone 2 endochondral element +intersection_of: UBERON:0015105 ! distal tarsal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015106 ! distal tarsal bone 2 cartilage +relationship: distally_connected_to UBERON:0003651 ! metatarsal bone of digit 2 +relationship: proximally_connected_to UBERON:0001451 ! navicular bone of pes + +[Term] +id: UBERON:0001454 +name: distal tarsal bone 3 +def: "Endochondral tarsal bone articulating with centralia and metatarsal 3." [http://en.wikipedia.org/wiki/Lateral_cuneiform_bone, VSAO:0005054] +comment: The lateral cuneiform (also known as third cuneiform / external cuneiform) intermediate in size between the other two cuneiform bones, is also wedge-shaped, the base being uppermost. It occupies the center of the front row of the tarsal bones, between the second cuneiform medially, the cuboid laterally, the navicular posteriorly and the third metatarsal in front. [WP,unvetted] +subset: uberon_slim +synonym: "3rd cuneiform" RELATED [EMAPA:36178] +synonym: "cuneiforme 3" EXACT [VSAO:0005054] +synonym: "distal tarsal 3" RELATED [VSAO:0005054] +synonym: "distal tarsal 3 bone" EXACT SYSTEMATIC [UBERON:cjm] +synonym: "ectocuneiforme" EXACT [VSAO:0005054] +synonym: "external cuneiform" EXACT [http://en.wikipedia.org/wiki/Lateral_cuneiform_bone] +synonym: "external cuneiform bone of foot" EXACT [] +synonym: "foor distal carpal bone 3" RELATED [] +synonym: "lateral cuneiform" EXACT [] +synonym: "lateral cuneiform bone" EXACT [FMA:24520] +synonym: "os cuneiforme laterale" EXACT LATIN [NominaAnatomicaVeterinaria:2005] +synonym: "os cuneiforme laterale" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_cuneiform_bone] +synonym: "os cuneiforme tertium" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_cuneiform_bone] +synonym: "os tarsale III" EXACT LATIN [NominaAnatomicaVeterinaria:2005] +synonym: "ossa cuneiforme laterale" RELATED [BTO:0002358] +synonym: "tarsal 3" EXACT [AAO:0000920] +synonym: "third cuneiform bone" EXACT [] +xref: AAO:0000920 +xref: BTO:0002358 +xref: EMAPA:36178 +xref: FMA:24520 +xref: galen:LateralCuneiform +xref: http://en.wikipedia.org/wiki/Lateral_cuneiform_bone +xref: http://linkedlifedata.com/resource/umls/id/C1517036 +xref: http://www.snomedbrowser.com/Codes/Details/182117003 +xref: MA:0001354 +xref: NCIT:C32554 +xref: OpenCyc:Mx4rvoLPu5wpEbGdrcN5Y29ycA +xref: UMLS:C1517036 {source="ncithesaurus:External_Cuneiform_Bone_of_the_Foot"} +xref: VSAO:0005054 +is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015108 ! distal tarsal bone 3 endochondral element +intersection_of: UBERON:0015108 ! distal tarsal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015109 ! distal tarsal bone 3 cartilage +relationship: distally_connected_to UBERON:0003652 ! metatarsal bone of digit 3 +relationship: proximally_connected_to UBERON:0001451 ! navicular bone of pes + +[Term] +id: UBERON:0001455 +name: cuboid bone +def: "A tarsal bone that is formed from distal tarsals 4 and 5. [WP,modified]." [http://en.wikipedia.org/wiki/Cuboid_bone] +subset: uberon_slim +synonym: "cuboid" EXACT [] +synonym: "cuboideum" RELATED [] +synonym: "distal tarsal bones 4 and 5" RELATED [] +synonym: "foot distal tarsal bone 4 and 5" RELATED [] +synonym: "os cuboideum" RELATED LATIN [BTO:0002357, http://en.wikipedia.org/wiki/Cuboid_bone] +synonym: "os tarsale IV et V" RELATED LATIN [http://orcid.org/0000-0002-6601-2165] +xref: BTO:0002357 +xref: Cuboid:bone +xref: EMAPA:36175 +xref: FMA:24527 +xref: galen:Cuboid +xref: http://linkedlifedata.com/resource/umls/id/C0376381 +xref: http://www.snomedbrowser.com/Codes/Details/182101009 +xref: MA:0001355 +xref: NCIT:C32414 +xref: UMLS:C0376381 {source="ncithesaurus:Cuboid_Bone"} +is_a: UBERON:0010721 ! distal tarsal bone +intersection_of: UBERON:0010721 ! distal tarsal bone +intersection_of: has_fused_element UBERON:0010737 ! distal tarsal bone 4 +intersection_of: has_fused_element UBERON:0010738 ! distal tarsal bone 5 +relationship: has_fused_element UBERON:0010737 ! distal tarsal bone 4 +relationship: has_fused_element UBERON:0010738 ! distal tarsal bone 5 + +[Term] +id: UBERON:0001456 +name: face +def: "A subdivision of the head that has as parts the layers deep to the surface of the anterior surface, including the mouth, eyes, and nose (when present). In vertebrates, this includes the facial skeleton and structures superficial to the facial skeleton (cheeks, mouth, eyeballs, skin of face, etc)." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "facia/facies" RELATED LATIN [http://en.wikipedia.org/wiki/Face] +synonym: "visage" RELATED [BTO:0003369] +xref: BTO:0003369 +xref: CALOHA:TS-2216 +xref: EMAPA:32763 +xref: FMA:24728 +xref: GAID:64 +xref: galen:Face +xref: HAO:0000316 +xref: http://en.wikipedia.org/wiki/Face +xref: http://linkedlifedata.com/resource/umls/id/C0015450 +xref: http://www.snomedbrowser.com/Codes/Details/302549007 +xref: MA:0002473 +xref: MESH:D005145 +xref: NCIT:C13071 +xref: OpenCyc:Mx4rvVi5GZwpEbGdrcN5Y29ycA +xref: UMLS:C0015450 {source="ncithesaurus:Face"} +is_a: UBERON:0001444 ! subdivision of head +relationship: contributes_to_morphology_of UBERON:0000033 ! head +relationship: has_part UBERON:0000165 ! mouth + +[Term] +id: UBERON:0001457 +name: skin of eyelid +def: "A zone of skin that is part of a eyelid [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "blepharon zone of skin" EXACT [OBOL:automatic] +synonym: "eyelid skin" EXACT [] +synonym: "eyelid zone of skin" EXACT [OBOL:automatic] +synonym: "zone of skin of blepharon" EXACT [OBOL:automatic] +synonym: "zone of skin of eyelid" EXACT [OBOL:automatic] +xref: EMAPA:37536 {source="MA:th"} +xref: FMA:24760 +xref: http://linkedlifedata.com/resource/umls/id/C0222088 +xref: http://www.snomedbrowser.com/Codes/Details/245947005 +xref: MA:0001256 +xref: NCIT:C52718 +xref: UMLS:C0222088 {source="ncithesaurus:Eyelid_Skin"} +is_a: UBERON:1000021 ! skin of face +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0001711 ! eyelid +relationship: part_of UBERON:0001711 ! eyelid + +[Term] +id: UBERON:0001458 +name: skin of lip +def: "A zone of skin that is part of a lip [Automatically generated definition]." [OBOL:automatic] +synonym: "lip skin" EXACT [] +synonym: "lip zone of skin" EXACT [OBOL:automatic] +synonym: "skin of lips" RELATED PLURAL [] +synonym: "zone of skin of lip" EXACT [OBOL:automatic] +xref: EMAPA:37643 {source="MA:th"} +xref: FMA:24764 +xref: http://linkedlifedata.com/resource/umls/id/C0222101 +xref: http://www.snomedbrowser.com/Codes/Details/244092005 +xref: MA:0001579 +xref: NCIT:C12291 +xref: UMLS:C0222101 {source="ncithesaurus:Skin_of_the_Lip"} +is_a: UBERON:0001084 ! skin of head +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0001833 ! lip +relationship: part_of UBERON:0001833 ! lip + +[Term] +id: UBERON:0001459 +name: skin of external ear +def: "A zone of skin that is part of a external ear [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "auricular region of head zone of skin" EXACT [OBOL:automatic] +synonym: "auricular region zone of skin" EXACT [OBOL:automatic] +synonym: "ear skin" EXACT [] +synonym: "external ear skin" EXACT [] +synonym: "external ear zone of skin" EXACT [OBOL:automatic] +synonym: "outer ear zone of skin" EXACT [OBOL:automatic] +synonym: "zone of skin of auricular region" EXACT [OBOL:automatic] +synonym: "zone of skin of auricular region of head" EXACT [OBOL:automatic] +synonym: "zone of skin of external ear" EXACT [OBOL:automatic] +synonym: "zone of skin of outer ear" EXACT [OBOL:automatic] +xref: EMAPA:35301 +xref: FMA:24775 +xref: http://linkedlifedata.com/resource/umls/id/C0222110 +xref: http://www.snomedbrowser.com/Codes/Details/244073008 +xref: MA:0001233 +xref: NCIT:C49481 +xref: UMLS:C0222110 {source="ncithesaurus:Ear_Skin"} +is_a: UBERON:0001084 ! skin of head +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0001691 ! external ear +relationship: part_of UBERON:0001757 ! pinna + +[Term] +id: UBERON:0001460 +name: arm +def: "The part of the forelimb extending from the shoulder to the autopod[cjm]." [http://en.wikipedia.org/wiki/Arm] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "brachium" RELATED LATIN [http://en.wikipedia.org/wiki/Arm] +synonym: "upper extremity" RELATED [MESH:A01.378.800] +xref: BTO:0001435 +xref: CALOHA:TS-2204 +xref: EFO:0001410 +xref: EHDAA2:0000140 +xref: EHDAA:4164 +xref: EHDAA:6210 +xref: EHDAA:8275 +xref: EMAPA:17413 +xref: GAID:52 +xref: http://en.wikipedia.org/wiki/Arm +xref: MA:0000033 +xref: MESH:A01.378.800 +xref: MESH:D001132 +xref: OpenCyc:Mx4rvVjp5ZwpEbGdrcN5Y29ycA +xref: VHOG:0000339 +is_a: UBERON:0006058 ! multi-limb segment region +is_a: UBERON:0008785 ! upper limb segment +relationship: distally_connected_to UBERON:0002398 ! manus +relationship: proximally_connected_to UBERON:0001467 ! shoulder + +[Term] +id: UBERON:0001461 +name: elbow +def: "The elbow is the region surrounding the elbow-joint-the ginglymus or hinge joint in the middle of the arm. Three bones form the elbow joint: the humerus of the upper arm, and the paired radius and ulna of the forearm. The bony prominence at the very tip of the elbow is the olecranon process of the ulna, and the inner aspect of the elbow is called the antecubital fossa. [WP,unvetted,human-specific]." [http://en.wikipedia.org/wiki/Elbow] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "articulatio cubiti" RELATED LATIN [http://en.wikipedia.org/wiki/Elbow] +synonym: "cubital region" EXACT [] +synonym: "elbow limb segment" EXACT [] +synonym: "elbow region" EXACT [] +xref: CALOHA:TS-2222 +xref: EFO:0003069 +xref: EHDAA2:0000429 +xref: EHDAA:4166 +xref: EHDAA:6212 +xref: EMAPA:17414 +xref: FMA:24901 +xref: GAID:54 +xref: galen:Elbow +xref: http://en.wikipedia.org/wiki/Elbow +xref: http://www.snomedbrowser.com/Codes/Details/76248009 +xref: MA:0000036 +xref: MESH:D004550 +xref: OpenCyc:Mx4rvVjjNZwpEbGdrcN5Y29ycA +xref: VHOG:0000340 +is_a: UBERON:0008785 ! upper limb segment +relationship: part_of UBERON:0001460 {source="EHDAA2"} ! arm + +[Term] +id: UBERON:0001463 +name: manual digit 1 +def: "1st (preaxial) digit of the manus[Wikipedia]." [http://en.wikipedia.org/wiki/Thumb, PMCID:PMC2553264] +subset: pheno_slim +subset: uberon_slim +synonym: "alula" NARROW SENSU [http://en.wikipedia.org/wiki/Alula] +synonym: "digit 1 of fore-paw" EXACT [EMAPA:17429] +synonym: "digit 1 of manus" EXACT [] +synonym: "digitus 1" BROAD [] +synonym: "digitus I" BROAD LATIN [http://en.wikipedia.org/wiki/Thumb] +synonym: "digitus primus" BROAD LATIN [http://en.wikipedia.org/wiki/Thumb] +synonym: "digitus primus [I]" BROAD [] +synonym: "finger 1" EXACT [EHDAA2:0000511] +synonym: "first digit of hand" EXACT [] +synonym: "first finger" RELATED [EMAPA:17429] +synonym: "fore digit I" EXACT [AAO:0010639] +synonym: "fore limb digit 1" EXACT [OBOL:accepted] +synonym: "forelimb dewclaw" NARROW SENSU [http://en.wikipedia.org/wiki/Dewclaw] +synonym: "hand digit 1" EXACT [MA:0000454] +synonym: "hand digit 1" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit 1" EXACT [] +synonym: "manual digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "pollex" EXACT LATIN [http://en.wikipedia.org/wiki/Thumb] +synonym: "thumb" NARROW SENSU [] +xref: AAO:0010639 +xref: EHDAA2:0000511 +xref: EMAPA:17429 +xref: FMA:24938 +xref: GAID:58 +xref: http://en.wikipedia.org/wiki/Thumb +xref: http://linkedlifedata.com/resource/umls/id/C0040067 +xref: http://www.snomedbrowser.com/Codes/Details/302540006 +xref: http://www.snomedbrowser.com/Codes/Details/69603001 +xref: MA:0000454 +xref: MESH:D013933 +xref: NCIT:C52834 +xref: OpenCyc:Mx4rvVjVbpwpEbGdrcN5Y29ycA +xref: UMLS:C0040067 {source="ncithesaurus:Hand_Digit_1"} +is_a: UBERON:0006048 ! digit 1 +is_a: UBERON:0019231 ! manual digit 1 or 5 +intersection_of: UBERON:0006048 ! digit 1 +intersection_of: part_of UBERON:0002398 ! manus +relationship: ambiguous_for_taxon NCBITaxon:8782 +relationship: part_of UBERON:5001463 ! manual digit 1 plus metapodial segment +relationship: preaxialmost_part_of UBERON:0002398 ! manus + +[Term] +id: UBERON:0001464 +name: hip +def: "The hip region is located lateral to the gluteal region (i.e. the buttock), inferior to the iliac crest, and overlying the greater trochanter of the thigh bone. In adults, three of the bones of the pelvis have fused into the hip bone which forms part of the hip region. The hip joint, scientifically referred to as the acetabulofemoral joint (art. coxae), is the joint between the femur and acetabulum of the pelvis and its primary function is to support the weight of the body in both static (e.g. standing) and dynamic (e.g. walking or running) postures. [WP,modified]." [http://en.wikipedia.org/wiki/Hip] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "coxa" RELATED LATIN [http://en.wikipedia.org/wiki/Hip] +synonym: "hip region" EXACT [FMA:24964] +synonym: "regio coxae" EXACT [FMA:24964] +xref: BTO:0001457 +xref: CALOHA:TS-2226 +xref: EFO:0001929 +xref: EHDAA2:0000783 +xref: EHDAA:5153 +xref: EHDAA:6178 +xref: EMAPA:17490 +xref: FMA:24964 +xref: GAID:47 +xref: galen:Hip +xref: http://en.wikipedia.org/wiki/Hip +xref: http://linkedlifedata.com/resource/umls/id/C0019552 +xref: http://www.snomedbrowser.com/Codes/Details/302543008 +xref: MA:0000045 +xref: MESH:D006615 +xref: NCIT:C64193 +xref: OpenCyc:Mx4rvVjhy5wpEbGdrcN5Y29ycA +xref: UMLS:C0019552 {source="ncithesaurus:Hip"} +xref: VHOG:0000346 +is_a: UBERON:0000475 ! organism subdivision +relationship: part_of UBERON:0010709 ! pelvic complex + +[Term] +id: UBERON:0001465 +name: knee +def: "A segment of the hindlimb that corresponds to the joint connecting a hindlimb stylopod and zeugopod." [https://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "knee region" EXACT [] +xref: BTO:0003595 +xref: CALOHA:TS-2220 +xref: EHDAA2:0000895 +xref: EHDAA:5159 +xref: EHDAA:6184 +xref: EMAPA:17493 +xref: FMA:24974 +xref: GAID:48 +xref: galen:Knee +xref: http://www.snomedbrowser.com/Codes/Details/361291001 +xref: MA:0000046 +xref: MESH:D007717 +xref: OpenCyc:Mx4rvVjPKZwpEbGdrcN5Y29ycA +xref: VHOG:0000347 +is_a: UBERON:0008784 ! lower limb segment +relationship: part_of UBERON:0000978 ! leg + +[Term] +id: UBERON:0001466 +name: pedal digit +alt_id: UBERON:0000027 +def: "A digit that is part of a pes (foot)." [https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "digit of foot" EXACT [] +synonym: "digit of terminal segment of lower limb" EXACT [OBOL:automatic] +synonym: "digiti pedis" EXACT PLURAL [FMA:70664, FMA:TA] +synonym: "digiti pedis" RELATED LATIN [http://en.wikipedia.org/wiki/Toe] +synonym: "digitipedis" RELATED [BTO:0002348] +synonym: "digitus pedis" EXACT [] +synonym: "foot digit" EXACT [MA:0000048] +synonym: "hind digit" EXACT [XAO:0003035] +synonym: "hind_digit" EXACT [AAO:0000888] +synonym: "hindlimb digit" EXACT [] +synonym: "pedal digit (phalangeal portion) plus soft tissue" EXACT COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "pes digit" EXACT [] +synonym: "toe" EXACT [FMA:25046] +xref: AAO:0000888 +xref: BTO:0002348 +xref: EMAPA:32649 +xref: FMA:25046 +xref: GAID:44 +xref: galen:Toe +xref: http://en.wikipedia.org/wiki/Toe +xref: http://linkedlifedata.com/resource/umls/id/C0040357 +xref: http://www.snomedbrowser.com/Codes/Details/116667001 +xref: MA:0000048 +xref: NCIT:C33788 +xref: OpenCyc:Mx4rvVjCHZwpEbGdrcN5Y29ycA +xref: UMLS:C0040357 {source="ncithesaurus:Toe"} +xref: XAO:0003035 +is_a: UBERON:0002544 ! digit +intersection_of: UBERON:0002544 ! digit +intersection_of: part_of UBERON:0002387 ! pes +relationship: part_of UBERON:0012142 {source="PHENOSCAPE:ni"} ! pedal digitopodium region +relationship: part_of UBERON:5001466 ! pedal digit plus metapodial segment + +[Term] +id: UBERON:0001467 +name: shoulder +def: "A subdivision of the pectoral complex consisting of the structures in the region of the shoulder joint (which connects the humerus, scapula and clavicle)." [http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "articulatio humeri" RELATED LATIN [http://en.wikipedia.org/wiki/Shoulder] +synonym: "shoulder region" EXACT [] +xref: CALOHA:TS-2229 +xref: EFO:0003068 +xref: EHDAA2:0001834 +xref: EHDAA:4180 +xref: EHDAA:6228 +xref: EMAPA:17421 +xref: FMA:25202 +xref: GAID:60 +xref: galen:Shoulder +xref: http://en.wikipedia.org/wiki/Shoulder +xref: http://linkedlifedata.com/resource/umls/id/C0037004 +xref: http://www.snomedbrowser.com/Codes/Details/361103004 +xref: MA:0000038 +xref: MESH:D012782 +xref: NCIT:C25203 +xref: OpenCyc:Mx4rvViCM5wpEbGdrcN5Y29ycA +xref: UMLS:C0037004 {source="ncithesaurus:Shoulder"} +xref: VHOG:0000342 +is_a: UBERON:0000475 ! organism subdivision +relationship: has_part UBERON:0016884 ! shoulder joint +relationship: part_of UBERON:0010708 ! pectoral complex + +[Term] +id: UBERON:0001468 +name: intervertebral joint +def: "The joint between adjacent vertebral bodies. May be composed of the nucleus pulposus, annular ligament, and the anterior and posterior longitudinal ligaments." [http://www.medilexicon.com/medicaldictionary.php?t=87401] +synonym: "inter-centrum joint" EXACT [] +synonym: "inter-vertebral joint" EXACT [] +synonym: "intervertebral symphysis" EXACT [FMA:25511] +synonym: "joint of vertebral body" EXACT [FMA:25511] +synonym: "vertebral joint" BROAD [] +xref: EMAPA:37622 {source="MA:th"} +xref: FMA:25511 +xref: http://linkedlifedata.com/resource/umls/id/C1182940 +xref: http://www.snomedbrowser.com/Codes/Details/244512000 +xref: MA:0001514 +xref: NCIT:C49577 +xref: UMLS:C1182940 {source="ncithesaurus:Vertebral_Joint"} +is_a: UBERON:0002216 {source="FMA"} ! symphysis +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001075 {minCardinality="2", maxCardinality="2"} ! bony vertebral centrum +relationship: connects UBERON:0001075 {notes="connects successive pairs of centra"} ! bony vertebral centrum +relationship: part_of UBERON:0001130 {source="FMA"} ! vertebral column + +[Term] +id: UBERON:0001469 +name: sternoclavicular joint +def: "The sternoclavicular articulation is a double arthrodial joint composed of two portions separated by an articular disc. The parts entering into its formation are the sternal end of the clavicle, the upper and lateral part of the manubrium sterni, and the cartilage of the first rib, visible from the outside as the suprasternal notch. The articular surface of the clavicle is much larger than that of the sternum, and is invested with a layer of cartilage, which is considerably thicker than that on the latter bone. The ligaments of this joint are: Articular capsule Anterior sternoclavicular ligament Posterior sternoclavicular ligament Interclavicular ligament Costoclavicular ligament Articular disk [WP,unvetted]." [http://en.wikipedia.org/wiki/Sternoclavicular_articulation] +subset: uberon_slim +synonym: "articulatio sternoclavicularis" RELATED LATIN [http://en.wikipedia.org/wiki/Sternoclavicular_articulation] +synonym: "sterno clavicular joint" EXACT [] +synonym: "sternoclavicular" BROAD [http://en.wikipedia.org/wiki/Sternoclavicular_articulation] +synonym: "sternoclavicular articulation" EXACT [http://en.wikipedia.org/wiki/Sternoclavicular_articulation] +xref: EMAPA:19203 +xref: FMA:25883 +xref: GAID:270 +xref: http://linkedlifedata.com/resource/umls/id/C0038291 +xref: http://www.snomedbrowser.com/Codes/Details/182165002 +xref: MA:0001507 +xref: MESH:D013247 +xref: NCIT:C33615 +xref: OpenCyc:Mx4rv_eLJZwpEbGdrcN5Y29ycA +xref: OpenCyc:Mx4rwI-ZZpwpEbGdrcN5Y29ycA +xref: Sternoclavicular:articulation +xref: UMLS:C0038291 {source="ncithesaurus:Sternoclavicular_Joint"} +is_a: UBERON:0011108 {source="FMA"} ! synovial joint of pectoral girdle +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0000975 ! sternum +intersection_of: connects UBERON:0001105 ! clavicle bone +relationship: connects UBERON:0000975 {notes="clavicular notch of the manubrium sterni"} ! sternum +relationship: connects UBERON:0001105 {notes="sternal end of the clavicle and first rib"} ! clavicle bone + +[Term] +id: UBERON:0001470 +name: glenohumeral joint +def: "The glenohumeral joint, commonly known as the shoulder joint, is a multiaxial synovial ball and socket joint and involves articulation between the glenoid fossa of the scapula (shoulder blade) and the head of the humerus (upper arm bone). [WP,unvetted]." [http://en.wikipedia.org/wiki/Glenohumeral_joint] +subset: uberon_slim +synonym: "articulatio humeri" EXACT LATIN [FMA:25912, FMA:TA] +synonym: "humeral joint" EXACT [FMA:25912] +synonym: "humeroscapular joint" RELATED [http://en.wikipedia.org/wiki/Glenohumeral_joint] +synonym: "joint of shoulder" BROAD [OBOL:automatic] +synonym: "shoulder joint" BROAD [MA:0000459] +xref: EMAPA:19105 +xref: FMA:25912 +xref: GAID:269 +xref: galen:ShoulderJoint +xref: Glenohumeral:joint +xref: http://linkedlifedata.com/resource/umls/id/C0037009 +xref: http://www.snomedbrowser.com/Codes/Details/182168000 +xref: MA:0000459 +xref: MESH:D012785 +xref: NCIT:C33548 +xref: OpenCyc:Mx4rwP32BZwpEbGdrcN5Y29ycA +xref: UMLS:C0037009 {source="ncithesaurus:Shoulder_Joint"} +xref: VHOG:0001002 +is_a: UBERON:0011108 ! synovial joint of pectoral girdle +is_a: UBERON:0011139 {source="FMA"} ! synovial limb joint +is_a: UBERON:0016884 ! shoulder joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0000976 ! humerus +intersection_of: connects UBERON:0006849 ! scapula +relationship: adjacent_to UBERON:0006657 ! glenoid fossa +relationship: connects UBERON:0000976 ! humerus +relationship: connects UBERON:0006849 ! scapula +relationship: part_of UBERON:0004753 ! scapulocoracoid + +[Term] +id: UBERON:0001471 +name: skin of prepuce of penis +def: "the loose fold of skin that covers the penis" [MP:0003553, NCBI:matt] +subset: pheno_slim +synonym: "foreskin of penis" EXACT [] +synonym: "penis foreskin" EXACT [] +synonym: "preputial skin" EXACT [] +xref: EV:0100109 +xref: FMA:27648 +xref: http://www.snomedbrowser.com/Codes/Details/39059001 +xref: MA:0001744 +xref: VHOG:0001342 +is_a: UBERON:0001331 ! skin of penis +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0001332 ! prepuce of penis +relationship: contributes_to_morphology_of UBERON:0000989 ! penis +relationship: part_of UBERON:0001332 ! prepuce of penis + +[Term] +id: UBERON:0001472 +name: vaginal venous plexus +def: "The vaginal plexuses are placed at the sides of the vagina; they communicate with the uterine, vesical, and hemorrhoidal plexuses, and are drained by the vaginal veins, one on either side, into the hypogastric veins. [WP,unvetted]." [http://en.wikipedia.org/wiki/Vaginal_venous_plexus] +subset: uberon_slim +synonym: "plexus venosus vaginalis" RELATED LATIN [http://en.wikipedia.org/wiki/Vaginal_venous_plexus] +synonym: "venous vaginal plexus" EXACT [] +xref: EMAPA:37801 {source="MA:th"} +xref: FMA:29713 +xref: http://en.wikipedia.org/wiki/Vaginal_venous_plexus +xref: http://www.snomedbrowser.com/Codes/Details/294653003 +xref: MA:0002257 +is_a: UBERON:0001593 ! venous plexus +is_a: UBERON:0006876 ! vasculature of organ +intersection_of: UBERON:0001593 ! venous plexus +intersection_of: part_of UBERON:0000996 ! vagina +relationship: part_of UBERON:0000996 ! vagina + +[Term] +id: UBERON:0001473 +name: lymphatic vessel +def: "A vessel that contains or conveys lymph, that originates as an interfibrillar or intercellular cleft or space in a tissue or organ, and that if small has no distinct walls or walls composed only of endothelial cells and if large resembles a vein in structure[BTO]." [BTO:0000752, http://en.wikipedia.org/wiki/Lymphatic_vessel] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "lymph vessel" EXACT [] +synonym: "vas lymphaticum" RELATED LATIN [http://en.wikipedia.org/wiki/Lymphatic_vessel] +xref: AAO:0011005 +xref: BTO:0000752 +xref: CALOHA:TS-2102 +xref: EFO:0000873 +xref: EMAPA:35532 +xref: FMA:30315 +xref: http://linkedlifedata.com/resource/umls/id/C0229889 +xref: http://www.snomedbrowser.com/Codes/Details/279089004 +xref: Lymphatic:vessel +xref: MA:0000138 +xref: MAT:0000443 +xref: NCIT:C33038 +xref: OpenCyc:Mx4rwA1fYZwpEbGdrcN5Y29ycA +xref: TAO:0005105 +xref: UMLS:C0229889 {source="ncithesaurus:Lymphatic_Vessel"} +xref: VHOG:0001249 +xref: XAO:0000375 +is_a: UBERON:0000055 ! vessel +intersection_of: UBERON:0000055 ! vessel +intersection_of: part_of UBERON:0004536 ! lymph vasculature +disjoint_from: UBERON:0001981 ! blood vessel +relationship: contributes_to_morphology_of UBERON:0002405 ! immune system +relationship: dubious_for_taxon NCBITaxon:8342 {source="https://doi.org/10.1152/japplphysiol.00201.2013"} +relationship: has_part UBERON:0002391 ! lymph +relationship: part_of UBERON:0004536 ! lymph vasculature + +[Term] +id: UBERON:0001474 +name: bone element +def: "Skeletal element that is composed of bone tissue." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, https://github.com/obophenotype/uberon/issues/277, PSPUB:0000170, VSAO:0000057] +subset: efo_slim +subset: major_organ +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "bone" RELATED [AEO:0000082, BTO:0000140, MA:0001459, VHOG:0001190] +synonym: "bone organ" EXACT [FMA:5018] +synonym: "bones" RELATED PLURAL [ZFA:0001514] +xref: AAO:0000047 +xref: AEO:0000082 +xref: BTO:0000140 +xref: CALOHA:TS-0088 +xref: EFO:0000298 +xref: EHDAA2:0003082 +xref: EMAPA:32782 +xref: ENVO:00002039 +xref: EV:0100140 +xref: FMA:30317 +xref: FMA:5018 +xref: GAID:92 +xref: galen:Bone +xref: http://en.wikipedia.org/wiki/Bone +xref: http://linkedlifedata.com/resource/umls/id/C0262950 +xref: http://www.snomedbrowser.com/Codes/Details/90780006 +xref: MA:0001459 +xref: MAT:0000299 +xref: MIAA:0000299 +xref: NCIT:C12366 +xref: OpenCyc:Mx4rvViDlpwpEbGdrcN5Y29ycA +xref: OpenCyc:Mx4rvVkCG5wpEbGdrcN5Y29ycA +xref: TAO:0001514 +xref: UMLS:C0262950 {source="ncithesaurus:Bone"} +xref: VHOG:0001190 +xref: VSAO:0000057 +xref: XAO:0000169 +xref: ZFA:0001514 +is_a: UBERON:0004765 ! skeletal element +intersection_of: UBERON:0004765 ! skeletal element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +disjoint_from: UBERON:0001630 ! muscle organ +disjoint_from: UBERON:0005090 ! muscle structure +disjoint_from: UBERON:0010538 ! paired limb/fin segment +relationship: composed_primarily_of UBERON:0002481 {source="VSAO-modified"} ! bone tissue + +[Term] +id: UBERON:0001475 +name: obsolete ligament +comment: made obsolete as it incorrectly grouped classes +is_obsolete: true +consider: FMA:30319 +consider: UBERON:0000211 +consider: UBERON:0002360 + +[Term] +id: UBERON:0001476 +name: deltoid +def: "A muscle of shoulder which attaches to the scapula, clavicle and humerus.[FMA,generalized]" [FMA:32521, http://orcid.org/0000-0002-6601-2165] +comment: We use a generic definition that includes the deltoideus as represented in AAO: 'Muscle which originates as three heads, the pars externalis, pars clavicularis, and pars scapularis. The pars externalis originates from the lateral border of the omosternum and inserts on the distal portion of the humerus. The pars clavicularis originates from the ventro-lateral surface of the clavicle and inserts on the deltoid crest of the humerus. The pars scapularis originates from the lateral surface of the clavicle and inserts on the deltoid crest of the humerus'. Kardong: Dorsal group +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "common shoulder muscle" RELATED [http://en.wikipedia.org/wiki/Deltoid_muscle] +synonym: "deltoid muscle" EXACT [http://en.wikipedia.org/wiki/Deltoid_muscle] +synonym: "deltoideus" RELATED [http://en.wikipedia.org/wiki/Deltoid_muscle] +synonym: "deltoideus muscle" RELATED [http://en.wikipedia.org/wiki/Deltoid_muscle] +synonym: "m. deltoideus" EXACT [AAO:0010716] +synonym: "musculus deltoideus" EXACT [http://en.wikipedia.org/wiki/Deltoid_muscle] +synonym: "musculus deltoideus" RELATED LATIN [http://en.wikipedia.org/wiki/Deltoid_muscle] +xref: AAO:0010716 +xref: Deltoid:muscle +xref: EFO:0001412 +xref: EHDAA2:0000339 +xref: EMAPA:18177 +xref: FMA:32521 +xref: http://linkedlifedata.com/resource/umls/id/C0224234 +xref: http://www.snomedbrowser.com/Codes/Details/181620007 +xref: MA:0002286 +xref: NCIT:C32446 +xref: OpenCyc:Mx4rvVjdc5wpEbGdrcN5Y29ycA +xref: UMLS:C0224234 {source="ncithesaurus:Deltoid"} +xref: VHOG:0000846 +is_a: UBERON:0001482 {source="FMA"} ! muscle of shoulder +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0034908 ! scapular muscle +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: attaches_to UBERON:0000976 ! humerus +intersection_of: attaches_to UBERON:0001105 ! clavicle bone +intersection_of: attaches_to UBERON:0006849 ! scapula +relationship: attaches_to UBERON:0000976 ! humerus +relationship: attaches_to UBERON:0001105 ! clavicle bone +relationship: attaches_to UBERON:0002498 {source="FMA"} ! deltopectoral crest +relationship: develops_from UBERON:0006219 {source="EHDAA2"} ! deltoid pre-muscle mass +relationship: has_muscle_antagonist UBERON:0001112 {source="dbpedia"} ! latissimus dorsi muscle +relationship: has_muscle_insertion UBERON:0002498 {notes="deltoid tuberosity of humerus", source="dbpedia"} ! deltopectoral crest +relationship: has_muscle_origin UBERON:0001105 {notes="the anterior border and upper surface of the lateral third of the clavicle acromion spine of the scapula", source="dbpedia"} ! clavicle bone +relationship: has_muscle_origin UBERON:0002497 {notes="the anterior border and upper surface of the lateral third of the clavicle acromion spine of the scapula", source="dbpedia"} ! acromion +relationship: has_muscle_origin UBERON:0006849 {notes="the anterior border and upper surface of the lateral third of the clavicle acromion spine of the scapula", source="dbpedia"} ! scapula +relationship: innervated_by UBERON:0001493 {source="dbpedia"} ! axillary nerve +relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle + +[Term] +id: UBERON:0001477 +name: infraspinatus muscle +def: "The infraspinatus muscle is a thick triangular muscle, which occupies the chief part of the infraspinatous fossa. The infraspinatus is a muscle of the rotator cuff. [WP,unvetted]." [http://en.wikipedia.org/wiki/Infraspinatus_muscle] +subset: pheno_slim +subset: uberon_slim +synonym: "infrascapularis" RELATED [EMAPA:18526] +synonym: "infraspinatus" EXACT [MA:0002323] +synonym: "musculus infraspinatus" RELATED LATIN [http://en.wikipedia.org/wiki/Infraspinatus_muscle] +xref: EHDAA2:0000826 +xref: EHDAA:8305 +xref: EMAPA:18526 +xref: FMA:32546 +xref: http://linkedlifedata.com/resource/umls/id/C0584882 +xref: http://www.snomedbrowser.com/Codes/Details/277439009 +xref: Infraspinatus:muscle +xref: MA:0002323 +xref: NCIT:C32797 +xref: OpenCyc:Mx4rwVT4_ZwpEbGdrcN5Y29ycA +xref: UMLS:C0584882 {source="ncithesaurus:Infraspinatus"} +xref: VHOG:0000921 +is_a: UBERON:0001482 ! muscle of shoulder +is_a: UBERON:0010891 ! pectoral complex muscle +is_a: UBERON:0034908 ! scapular muscle +relationship: has_muscle_insertion UBERON:0011187 {notes="middle facet of greater tubercle of the humerus", source="dbpedia"} ! ventral tubercle of humerus +relationship: has_muscle_origin UBERON:0006849 {notes="infraspinous fossa of the scapula", source="dbpedia"} ! scapula +relationship: part_of UBERON:0003683 {source="Wikipedia"} ! rotator cuff + +[Term] +id: UBERON:0001478 +name: teres major muscle +def: "Teres major is a muscle of the upper limb and one of six scapulohumeral muscles. It is a thick but somewhat flattened muscle. [WP,unvetted]." [http://en.wikipedia.org/wiki/Teres_major_muscle] +subset: pheno_slim +subset: uberon_slim +synonym: "musculus teres major" RELATED LATIN [http://en.wikipedia.org/wiki/Teres_major_muscle] +synonym: "teres major" EXACT [MA:0002392] +xref: EHDAA2:0002004 +xref: EHDAA:8321 +xref: EMAPA:19110 +xref: FMA:32549 +xref: http://en.wikipedia.org/wiki/Teres_major_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224232 +xref: http://www.snomedbrowser.com/Codes/Details/277444002 +xref: MA:0002392 +xref: NCIT:C33750 +xref: OpenCyc:Mx4rwJZqBJwpEbGdrcN5Y29ycA +xref: UMLS:C0224232 {source="ncithesaurus:Teres_Major_Muscle"} +xref: VHOG:0000750 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010467 ! teres muscle +relationship: develops_from UBERON:0010988 {source="EHDAA2"} ! teres major pre-muscle mass +relationship: has_muscle_insertion UBERON:0000976 {notes="medial lip of the intertubercular sulcus of the humerus", source="dbpedia"} ! humerus +relationship: has_muscle_origin UBERON:0007175 {notes="posterior aspect of the inferior angle of the scapula", source="dbpedia"} ! inferior angle of scapula + +[Term] +id: UBERON:0001479 +name: sesamoid bone +def: "A sesamoid element that is composed of bone tissue." [http://orcid.org/0000-0002-6601-2165] +comment: Sesamoids are often endochondral replacement elements and in addition to bone tissue, may also be composed of articular cartilage, fibrocartilage, hyaline cartilage, and calcified cartilage.[VSAO] +subset: uberon_slim +synonym: "ossa sesamoidea" EXACT LATIN [http://en.wikipedia.org/wiki/Sesamoid_bone] +synonym: "sesamoid" BROAD [] +xref: AEO:0000086 +xref: EHDAA2:0003086 +xref: EMAPA:36620 +xref: FMA:32672 +xref: GAID:210 +xref: galen:SessamoidBone +xref: http://linkedlifedata.com/resource/umls/id/C0036846 +xref: http://www.snomedbrowser.com/Codes/Details/362914002 +xref: MA:0001375 +xref: MESH:D012716 +xref: NCIT:C33541 +xref: Sesamoid:bone +xref: UMLS:C0036846 {source="ncithesaurus:Sesamoid_Bone"} +is_a: UBERON:0013630 {source="UBERON:cjm"} ! short bone +is_a: UBERON:0013631 ! sesamoid element +intersection_of: UBERON:0013631 ! sesamoid element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue + +[Term] +id: UBERON:0001480 +name: proximal carpal bone +def: "A carpal bone that proximally_connected_to a forelimb zeugopod skeleton." [OBOL:automatic] +xref: EMAPA:36164 +xref: FMA:33302 +xref: http://www.snomedbrowser.com/Codes/Details/306715004 +xref: MA:0002557 +is_a: UBERON:0001435 ! carpal bone +is_a: UBERON:0014395 ! proximal mesopodial bone +is_a: UBERON:0015078 ! proximal carpal endochondral element +intersection_of: UBERON:0015078 ! proximal carpal endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015079 ! proximal carpal cartilage + +[Term] +id: UBERON:0001481 +name: distal carpal bone +def: "A distal carpal endochondral element that is composed primarily of a bone tissue." [OBOL:automatic] +synonym: "distal carpal" EXACT [AAO:0000847] +xref: AAO:0000847 +xref: EMAPA:36168 +xref: FMA:33303 +xref: http://www.snomedbrowser.com/Codes/Details/306716003 +xref: MA:0002558 +is_a: UBERON:0001435 ! carpal bone +is_a: UBERON:0015068 ! distal carpal endochondral element +is_a: UBERON:0018102 ! distal mesopodial bone +intersection_of: UBERON:0015068 ! distal carpal endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015069 ! distal carpal cartilage element +relationship: distally_connected_to UBERON:0002374 ! metacarpal bone + +[Term] +id: UBERON:0001482 +name: muscle of shoulder +def: "Any muscle organ that is part of a shoulder [Automatically generated definition]." [OBOL:automatic] +synonym: "muscle organ of shoulder" EXACT [OBOL:automatic] +synonym: "shoulder muscle" EXACT [] +synonym: "shoulder muscle organ" EXACT [OBOL:automatic] +xref: EMAPA:36154 +xref: FMA:33531 +xref: MA:0000633 +is_a: UBERON:0014892 ! skeletal muscle organ +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: attaches_to UBERON:0003461 ! shoulder bone +relationship: attaches_to UBERON:0003461 ! shoulder bone +relationship: part_of UBERON:0004476 {source="prolog"} ! musculature of shoulder + +[Term] +id: UBERON:0001483 +name: skin of shoulder +def: "A zone of skin that is part of a shoulder region." [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +synonym: "shoulder skin" EXACT [] +synonym: "shoulder zone of skin" EXACT [OBOL:automatic] +synonym: "zone of skin of shoulder" EXACT [OBOL:automatic] +xref: EMAPA:18059 +xref: FMA:34830 +xref: http://www.snomedbrowser.com/Codes/Details/244131002 +xref: MA:0000635 +is_a: UBERON:0000014 ! zone of skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0001467 ! shoulder +relationship: part_of UBERON:0001467 ! shoulder + +[Term] +id: UBERON:0001484 +name: articular capsule +def: "An articular capsule (or joint capsule) is an envelope surrounding a synovial joint. [WP,unvetted]." [http://en.wikipedia.org/wiki/Articular_capsule] +subset: organ_slim +subset: uberon_slim +synonym: "capsula articularis" EXACT LATIN [FMA:34836, FMA:TA] +synonym: "capsulae articulares" RELATED LATIN [http://en.wikipedia.org/wiki/Articular_capsule] +synonym: "fibrous capsule of joint" EXACT [] +synonym: "joint capsule" EXACT [] +synonym: "joint fibrous capsule" EXACT [] +xref: Articular:capsule +xref: EMAPA:37621 {source="MA:th"} +xref: FMA:34836 +xref: GAID:263 +xref: galen:JointCapsule +xref: http://linkedlifedata.com/resource/umls/id/C0206207 +xref: http://www.snomedbrowser.com/Codes/Details/182238002 +xref: MA:0001519 +xref: MESH:D017746 +xref: NCIT:C32259 +xref: NCIT:C84388 +xref: UMLS:C0206207 {source="ncithesaurus:Joint_Capsule"} +is_a: UBERON:0000094 ! membrane organ +intersection_of: UBERON:0000094 ! membrane organ +intersection_of: has_part UBERON:0007616 ! layer of synovial tissue +intersection_of: surrounds UBERON:0002217 ! synovial joint +relationship: has_part UBERON:0007616 ! layer of synovial tissue +relationship: surrounds UBERON:0002217 ! synovial joint + +[Term] +id: UBERON:0001485 +name: knee joint +def: "The knee joint joins the thigh with the leg and consists of two articulations: one between the femur and tibia, and one between the femur and patella. It is the largest and most complicated joint in the human body. The knee is a mobile trocho-ginglymus (i.e. a pivotal hinge joint), which permits flexion and extension as well as a slight medial and lateral rotation[WP,unvetted]." [http://en.wikipedia.org/wiki/Knee] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "articulatio genus" RELATED LATIN [http://en.wikipedia.org/wiki/Knee] +synonym: "joint of knee" EXACT [OBOL:automatic] +xref: EFO:0001957 +xref: EMAPA:19137 +xref: FMA:35175 +xref: GAID:114 +xref: galen:KneeJoint +xref: http://en.wikipedia.org/wiki/Knee +xref: http://linkedlifedata.com/resource/umls/id/C0022745 +xref: http://www.snomedbrowser.com/Codes/Details/182204005 +xref: MA:0000471 +xref: MESH:D007719 +xref: NCIT:C32898 +xref: OpenCyc:Mx4rwCuaYZwpEbGdrcN5Y29ycA +xref: UMLS:C0022745 {source="ncithesaurus:Knee_Joint"} +xref: VHOG:0001003 +is_a: UBERON:0003840 ! hindlimb joint +is_a: UBERON:0011139 ! synovial limb joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0000979 ! tibia +intersection_of: connects UBERON:0000981 ! femur +intersection_of: connects UBERON:0002446 ! patella +relationship: connects UBERON:0000979 ! tibia +relationship: connects UBERON:0000981 ! femur +relationship: connects UBERON:0002446 ! patella +relationship: develops_from UBERON:0006256 {evidence="definitional"} ! knee joint primordium +relationship: part_of UBERON:0001465 ! knee + +[Term] +id: UBERON:0001486 +name: hip joint +def: "A synovial joint that connects the femur to the acetbulum of the innominate bone." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "articulatio coxofemoralis" EXACT [FMA:35178] +synonym: "coxal articulation" RELATED [http://en.wikipedia.org/wiki/Hip] +synonym: "femoro-iliac joint" EXACT [] +xref: Articulation +xref: BTO:0001502 +xref: EMAPA:19136 +xref: FMA:35178 +xref: GAID:262 +xref: galen:HipJoint +xref: http://linkedlifedata.com/resource/umls/id/C0019558 +xref: http://www.snomedbrowser.com/Codes/Details/182201002 +xref: MA:0000470 +xref: MESH:D006621 +xref: NCIT:C32742 +xref: OpenCyc:Mx4rwP32b5wpEbGdrcN5Y29ycA +xref: UMLS:C0019558 {source="ncithesaurus:Hip_Joint"} +xref: VHOG:0001001 +is_a: UBERON:0011107 {source="FMA"} ! synovial joint of pelvic girdle +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0000981 ! femur +intersection_of: connects UBERON:0001269 ! acetabular part of hip bone +relationship: connects UBERON:0000981 ! femur +relationship: connects UBERON:0001269 ! acetabular part of hip bone +relationship: develops_from UBERON:0006244 {evidence="definitional"} ! hip joint primordium +relationship: part_of UBERON:0001464 {source="FMA"} ! hip + +[Term] +id: UBERON:0001487 +name: pes joint +def: "A skeletal joint that is part of a pes [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "articulationes pedis" EXACT LATIN [FMA:71349, FMA:TA] +synonym: "foot joint" EXACT [] +synonym: "hind limb autopod joint" EXACT [OBOL:automatic] +synonym: "joint of pes" EXACT [] +synonym: "joint of terminal segment of free lower limb" EXACT [OBOL:automatic] +synonym: "joints of foot" EXACT PLURAL [FMA:71349] +synonym: "pedal joint" EXACT [] +xref: EMAPA:32949 +xref: FMA:35194 +xref: GAID:256 +xref: http://en.wikipedia.org/wiki/Joints_of_foot +xref: http://www.snomedbrowser.com/Codes/Details/244555001 +xref: MA:0000464 +xref: MESH:D033023 +is_a: UBERON:0003840 ! hindlimb joint +is_a: UBERON:0003841 ! autopod joint +is_a: UBERON:0011139 ! synovial limb joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: part_of UBERON:0002387 ! pes +relationship: fma_set_term FMA:71349 +relationship: part_of UBERON:0002387 ! pes + +[Term] +id: UBERON:0001488 +name: ankle joint +def: "A joint that connects the hindlimb autopod and zeugopod skeletons." [http://en.wikipedia.org/wiki/Ankle, https://orcid.org/0000-0002-6601-2165, MESH:A02.835.583.378.062] +subset: efo_slim +subset: uberon_slim +synonym: "gambrel" NARROW [http://en.wikipedia.org/wiki/Hock_(anatomy)] +synonym: "hock" NARROW [http://en.wikipedia.org/wiki/Hock_(anatomy)] +synonym: "hock joint" NARROW [http://en.wikipedia.org/wiki/Hock_(anatomy)] +synonym: "mortise joint" RELATED [BTO:0004706] +synonym: "talocrural articulation" RELATED [http://en.wikipedia.org/wiki/Ankle] +synonym: "talocrural joint" RELATED [http://en.wikipedia.org/wiki/Ankle] +synonym: "talotibial joint" NARROW [http://en.wikipedia.org/wiki/Ankle] +xref: BTO:0004706 +xref: EMAPA:35126 +xref: FMA:35195 +xref: GAID:257 +xref: galen:AnkleJoint +xref: http://en.wikipedia.org/wiki/Ankle +xref: http://linkedlifedata.com/resource/umls/id/C0003087 +xref: http://www.snomedbrowser.com/Codes/Details/182212002 +xref: MA:0000463 +xref: MESH:D000843 +xref: NCIT:C32078 +xref: OpenCyc:Mx4rvwiy35wpEbGdrcN5Y29ycA +xref: UMLS:C0003087 {source="ncithesaurus:Ankle_Joint"} +is_a: UBERON:0003840 ! hindlimb joint +is_a: UBERON:0011139 ! synovial limb joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001445 ! skeleton of pes +intersection_of: connects UBERON:0010720 ! hindlimb zeugopod skeleton +relationship: connects UBERON:0001445 ! skeleton of pes +relationship: connects UBERON:0010720 ! hindlimb zeugopod skeleton + +[Term] +id: UBERON:0001489 +name: manus joint +def: "A skeletal joint that is part of a manus (hand) [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "articulationes manus" EXACT LATIN [FMA:71345, FMA:TA] +synonym: "hand joint" EXACT [] +synonym: "joint of hand" EXACT [] +synonym: "joint of manus" EXACT [] +synonym: "joint of terminal segment of free upper limb" EXACT [OBOL:automatic] +synonym: "manual joint" EXACT [] +xref: EMAPA:32641 +xref: http://en.wikipedia.org/wiki/Joints_of_hand +xref: http://www.snomedbrowser.com/Codes/Details/244546004 +xref: MA:0000452 +is_a: UBERON:0003839 ! forelimb joint +is_a: UBERON:0003841 ! autopod joint +is_a: UBERON:0011139 ! synovial limb joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: part_of UBERON:0002398 ! manus +relationship: fma_set_term FMA:71345 +relationship: part_of UBERON:0002398 ! manus + +[Term] +id: UBERON:0001490 +name: elbow joint +def: "A joint that connects the forelimb zeugopod and stylopod skeletons[Obol]." [http://en.wikipedia.org/wiki/Elbow, https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "articulatio cubiti" EXACT LATIN [] +synonym: "cubital region joint" EXACT [OBOL:automatic] +synonym: "joint of cubital region" EXACT [OBOL:automatic] +synonym: "joint of elbow" EXACT [OBOL:automatic] +xref: EMAPA:19102 +xref: FMA:35289 +xref: GAID:253 +xref: galen:ElbowJoint +xref: http://en.wikipedia.org/wiki/Elbow +xref: http://linkedlifedata.com/resource/umls/id/C0013770 +xref: http://www.snomedbrowser.com/Codes/Details/182169008 +xref: MA:0000451 +xref: MESH:D004551 +xref: NCIT:C32497 +xref: UMLS:C0013770 {source="ncithesaurus:Elbow_Joint"} +xref: VHOG:0000997 +is_a: UBERON:0003839 ! forelimb joint +is_a: UBERON:0011139 ! synovial limb joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0000976 ! humerus +intersection_of: connects UBERON:0010703 ! forelimb zeugopod skeleton +relationship: connects UBERON:0000976 ! humerus +relationship: connects UBERON:0010703 ! forelimb zeugopod skeleton +relationship: develops_from UBERON:0006224 {evidence="definitional"} ! elbow joint primordium +relationship: part_of UBERON:0001461 ! elbow + +[Term] +id: UBERON:0001491 +name: wrist joint +def: "A joint connecting the forelimb zeugopod skeleton with the carpal skeleton." [http://en.wikipedia.org/wiki/Wrist, https://orcid.org/0000-0002-6601-2165, https://sourceforge.net/tracker/?group_id=76834&atid=1205376] +subset: uberon_slim +synonym: "carpal region joint" EXACT [OBOL:automatic] +synonym: "joint of carpal region" EXACT [OBOL:automatic] +synonym: "joint of wrist" EXACT [] +synonym: "radiocarpal joint" NARROW INCONSISTENT [FMA:35291] +xref: EMAPA:19205 +xref: FMA:321842 +xref: GAID:274 +xref: galen:WristJoint +xref: http://en.wikipedia.org/wiki/Wrist +xref: http://linkedlifedata.com/resource/umls/id/C1322271 +xref: http://www.snomedbrowser.com/Codes/Details/182178002 +xref: MA:0000460 +xref: MESH:A02.835.583.959 +xref: NCIT:C33894 +xref: OpenCyc:Mx4rvZD2PJwpEbGdrcN5Y29ycA +xref: UMLS:C1322271 {source="ncithesaurus:Wrist_Joint"} +is_a: UBERON:0001489 ! manus joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0009880 ! carpal skeleton +intersection_of: connects UBERON:0010703 ! forelimb zeugopod skeleton +relationship: connects UBERON:0009880 ! carpal skeleton +relationship: connects UBERON:0010703 ! forelimb zeugopod skeleton +relationship: part_of UBERON:0004452 ! carpal region + +[Term] +id: UBERON:0001492 +name: radial nerve +def: "A nerve that supplies the upper limb, including the triceps brachii muscle of the arm, as well as all 12 muscles in the posterior osteofascial compartment of the forearm, as well as the associated joints and overlying skin." [http://en.wikipedia.org/wiki/Radial_nerve] +subset: uberon_slim +synonym: "nervus radialis" RELATED LATIN [http://en.wikipedia.org/wiki/Radial_nerve] +xref: EHDAA2:0001584 +xref: EHDAA:5650 +xref: EMAPA:17278 +xref: FMA:37069 +xref: GAID:845 +xref: http://linkedlifedata.com/resource/umls/id/C0034518 +xref: http://www.snomedbrowser.com/Codes/Details/181011002 +xref: MA:0001171 +xref: MESH:D011826 +xref: NCIT:C52812 +xref: OpenCyc:Mx4rvfk7E5wpEbGdrcN5Y29ycA +xref: Radial:nerve +xref: UMLS:C0034518 {source="ncithesaurus:Radial_Nerve"} +xref: VHOG:0000896 +is_a: UBERON:0003433 ! arm nerve +relationship: branching_part_of UBERON:0001814 ! brachial nerve plexus +relationship: innervates UBERON:0001509 ! triceps brachii +relationship: innervates UBERON:0003403 ! skin of forearm +relationship: innervates UBERON:0004487 ! musculature of forelimb zeugopod +relationship: part_of UBERON:0001814 ! brachial nerve plexus + +[Term] +id: UBERON:0001493 +name: axillary nerve +def: "The axillary nerve is a nerve of the human body, that comes off the posterior cord of the brachial plexus at the level of the axilla (armpit) and carries nerve fibers from C5 and C6. The axillary nerve travels through the quadrangular space with the posterior circumflex humeral artery and vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Axillary_nerve] +subset: uberon_slim +synonym: "auxillery nerve" RELATED [http://en.wikipedia.org/wiki/Axillary_nerve] +synonym: "circumflex humeral nerve" EXACT [] +synonym: "circumflex nerve" RELATED [http://en.wikipedia.org/wiki/Axillary_nerve] +synonym: "nervus axillaris" RELATED [http://en.wikipedia.org/wiki/Axillary_nerve] +synonym: "nervus axillaris" RELATED LATIN [http://en.wikipedia.org/wiki/Axillary_nerve] +xref: Axillary:nerve +xref: EMAPA:18802 +xref: FMA:37072 +xref: http://linkedlifedata.com/resource/umls/id/C0228885 +xref: http://www.snomedbrowser.com/Codes/Details/181009006 +xref: MA:0001166 +xref: NCIT:C52817 +xref: OpenCyc:Mx4rvgwMfpwpEbGdrcN5Y29ycA +xref: UMLS:C0228885 {source="ncithesaurus:Axillary_Nerve"} +is_a: UBERON:0003433 ! arm nerve +relationship: innervates UBERON:0009472 ! axilla +relationship: part_of UBERON:0001814 {source="MA"} ! brachial nerve plexus + +[Term] +id: UBERON:0001494 +name: ulnar nerve +alt_id: UBERON:0005668 +def: "A nerve which runs near the ulna bone." [http://en.wikipedia.org/wiki/Ulnar_nerve] +subset: uberon_slim +synonym: "nervus ulnaris" RELATED LATIN [http://en.wikipedia.org/wiki/Ulnar_nerve] +xref: EHDAA2:0002099 +xref: EHDAA:5652 +xref: EMAPA:17279 +xref: FMA:37319 +xref: GAID:846 +xref: http://linkedlifedata.com/resource/umls/id/C0041602 +xref: http://www.snomedbrowser.com/Codes/Details/181012009 +xref: MA:0001174 +xref: MESH:D014459 +xref: NCIT:C52807 +xref: Ulnar:nerve +xref: UMLS:C0041602 {source="ncithesaurus:Ulnar_Nerve"} +xref: VHOG:0000922 +is_a: UBERON:0003433 ! arm nerve +relationship: branching_part_of UBERON:0001814 ! brachial nerve plexus +relationship: innervates UBERON:0003625 ! manual digit 5 +relationship: part_of UBERON:0001814 ! brachial nerve plexus + +[Term] +id: UBERON:0001495 +name: pectoral muscle +def: "Muscles of the upper chest. The term may refer to one of two muscles, the pectoralis major and pectoralis minor. The former is a thick muscle in the anterior portion of the chest. Its action involves flexion, medial rotation, and adduction of the humerus. The latter is a thin muscle located beneath the pectoralis major. Its action involves lowering the scapula and raising the ribs." [ncithesaurus:Pectoralis_Muscle] +comment: This currently groups the major and minor muscles (which have different attachment sites) as well as the AAO structure: Muscle which is comprised of three heads. The anterior head is the portio epicoracoidea that originates on the epicoracoid cartilage and inserts on the deltoid crest of the humerus. The next more posterior head, portio sternalis, originates on the sternum and inserts in the groove next to the deltoid crest of the humerus. The most posterior head, portio abdominalis, arises from the M. rectus abdominis and inserts on the deltoid crest of the humerus +subset: grouping_class +subset: pheno_slim +subset: uberon_slim +synonym: "breast muscle" RELATED [BTO:0000023] +synonym: "M. pectoralis" EXACT [AAO:0010727] +synonym: "muscle of pectoral part of chest" EXACT [FMA:37349] +synonym: "muscle of pectoral region" EXACT [FMA:37349] +synonym: "pectoralis" RELATED [] +synonym: "pectoralis group muscle" RELATED [] +synonym: "pectoralis muscle" RELATED [BTO:0000023] +xref: AAO:0010727 +xref: BTO:0000023 +xref: CALOHA:TS-0751 +xref: EMAPA:35670 +xref: FMA:37349 +xref: GAID:153 +xref: http://linkedlifedata.com/resource/umls/id/C0030747 +xref: http://www.snomedbrowser.com/Codes/Details/181621006 +xref: MA:0002423 +xref: MESH:D010369 +xref: NCIT:C33286 +xref: UMLS:C0030747 {source="ncithesaurus:Pectoralis_Muscle"} +is_a: UBERON:0003830 ! thoracic segment muscle +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0008196 {source="FMA"} ! muscle of pectoral girdle +relationship: develops_from UBERON:0010984 ! pectoral pre-muscle mass + +[Term] +id: UBERON:0001496 +name: ascending aorta +def: "The ascending aorta is the portion of the aorta in a two-pass circulatory system that lies between the heart and the arch of aorta[GO]. A portion of the aorta commencing at the upper part of the base of the left ventricle, on a level with the lower border of the third costal cartilage behind the left half of the sternum; it passes obliquely upward, forward, and to the right, in the direction of the heart's axis, as high as the upper border of the second right costal cartilage, describing a slight curve in its course, and being situated, about 6 cm behind the posterior surface of the sternum. The total length is about 5 cm in length [Wikipedia]" [GO:0035905, http://en.wikipedia.org/wiki/Ascending_aorta] +subset: pheno_slim +subset: uberon_slim +synonym: "aorta ascendens" RELATED LATIN [http://en.wikipedia.org/wiki/Ascending_aorta] +synonym: "ascending thoracic aorta" EXACT [EMAPA:17014] +synonym: "pars ascendens aortae" EXACT [] +synonym: "pars ascendens aortae" RELATED LATIN [http://en.wikipedia.org/wiki/Ascending_aorta] +xref: Ascending:aorta +xref: EHDAA2:0000147 +xref: EHDAA:9828 +xref: EMAPA:17014 +xref: FMA:3736 +xref: http://linkedlifedata.com/resource/umls/id/C0003956 +xref: http://www.snomedbrowser.com/Codes/Details/181299009 +xref: MA:0002570 +xref: NCIT:C32150 +xref: OpenCyc:Mx4rwVFqO5wpEbGdrcN5Y29ycA +xref: UMLS:C0003956 {source="ncithesaurus:Ascending_Aorta"} +is_a: UBERON:0001515 ! thoracic aorta +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0001515 ! thoracic aorta +relationship: develops_from UBERON:0005338 {source="EHDAA2"} ! outflow tract aortic component +relationship: has_developmental_contribution_from UBERON:0002061 ! truncus arteriosus +relationship: has_developmental_contribution_from UBERON:0005432 ! aortic sac + +[Term] +id: UBERON:0001497 +name: muscle of pelvic girdle +alt_id: UBERON:0003271 +def: "Any muscle organ that is part of a pelvic girdle [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "girdle-pelvic muscle organ" EXACT [OBOL:automatic] +synonym: "muscle organ of girdle-pelvic" EXACT [OBOL:automatic] +synonym: "muscle organ of pelvic girdle" EXACT [OBOL:automatic] +synonym: "muscle organ of pelvic girdle bone" EXACT [OBOL:automatic] +synonym: "pelvic girdle muscle" EXACT [] +synonym: "pelvic girdle muscle organ" EXACT [OBOL:automatic] +synonym: "pelvic girdle skeletal muscle" EXACT [EMAPA:18185] +xref: EHDAA:8326 +xref: EMAPA:18184 +xref: EMAPA:18185 +xref: FMA:37367 +xref: MA:0000537 +xref: RETIRED_EHDAA2:0001430 +is_a: UBERON:0001325 ! muscle of pelvis +is_a: UBERON:0010890 ! pelvic complex muscle +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0001271 ! pelvic girdle region +relationship: part_of UBERON:0004470 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! musculature of pelvic girdle + +[Term] +id: UBERON:0001498 +name: muscle of pes +def: "Any muscle organ that is part of a pes [Automatically generated definition]." [OBOL:automatic] +synonym: "foot muscle" EXACT [] +synonym: "foot muscle organ" EXACT [OBOL:automatic] +synonym: "muscle of foot" EXACT [FMA:37369] +synonym: "muscle organ of foot" EXACT [OBOL:automatic] +xref: BTO:0000477 +xref: EMAPA:36160 +xref: FMA:37369 +xref: http://www.snomedbrowser.com/Codes/Details/67240005 +xref: MA:0000652 +is_a: UBERON:0003663 ! hindlimb muscle +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0002387 ! pes +relationship: part_of UBERON:0004488 {source="prolog"} ! musculature of pes + +[Term] +id: UBERON:0001499 +name: muscle of arm +alt_id: UBERON:0003272 +def: "A muscle organ that is part of an arm [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "arm muscle" EXACT [MA:0000594] +synonym: "arm muscle system" RELATED [EHDAA2:0000141] +synonym: "arm skeletal muscle" EXACT [OBOL:automatic] +synonym: "arm skeletal muscle tissue" EXACT [OBOL:automatic] +synonym: "muscle of upper arm or lower arm" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "upper arm / lower arm muscle" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: EHDAA:8277 +xref: EMAPA:36053 +xref: MA:0000594 +xref: RETIRED_EHDAA2:0000142 +is_a: UBERON:0003662 ! forelimb muscle +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0001460 ! arm +relationship: part_of UBERON:0004474 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! musculature of arm + +[Term] +id: UBERON:0001500 +name: muscle of manus +def: "Any muscle organ that is part of a manus [Automatically generated definition]." [OBOL:automatic] +synonym: "hand muscle" EXACT [MA:0000628] +synonym: "manus muscle" EXACT [] +synonym: "manus muscle organ" EXACT [OBOL:automatic] +synonym: "muscle of hand" EXACT [FMA:37372] +synonym: "muscle organ of manus" EXACT [OBOL:automatic] +xref: EMAPA:32644 +xref: FMA:37372 +xref: http://www.snomedbrowser.com/Codes/Details/110540008 +xref: MA:0000628 +is_a: UBERON:0003662 ! forelimb muscle +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0002398 ! manus +relationship: part_of UBERON:0004489 {source="prolog"} ! musculature of manus + +[Term] +id: UBERON:0001501 +name: lumbrical muscle of manus +def: "The lumbricals are intrinsic muscles of the manus that flex the metacarpophalangeal joints and extend the interphalangeal joints" [http://en.wikipedia.org/wiki/Lumbricals_of_the_hand] +synonym: "hand lumbrical" EXACT [] +synonym: "hand lumbrical muscle" EXACT [MA:0002316] +synonym: "lumbrical muscle of hand" RELATED [FMA:37385] +synonym: "lumbrical of hand" EXACT [FMA:37385] +synonym: "musculi lumbricales manus" EXACT LATIN [http://en.wikipedia.org/wiki/Lumbricals_of_the_hand] +xref: EMAPA:36217 +xref: FMA:37385 +xref: http://en.wikipedia.org/wiki/Lumbricals_of_the_hand +xref: http://www.snomedbrowser.com/Codes/Details/181654008 +xref: MA:0002316 +is_a: UBERON:0014375 {source="FMA"} ! intrinsic muscle of manus +relationship: has_muscle_origin UBERON:0001523 ! flexor digitorum profundus + +[Term] +id: UBERON:0001502 +name: interosseous muscle of manus +def: "Any of the interosseous muscles of the manus (hand). This includes the dorsal and plantar interossei" [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "hand interosseous muscle" EXACT [MA:0002313] +synonym: "interosseous muscle of hand" EXACT [FMA:37417] +synonym: "manus interosseous muscle" EXACT [] +xref: EMAPA:36216 +xref: FMA:37417 +xref: http://linkedlifedata.com/resource/umls/id/C0224295 +xref: http://www.snomedbrowser.com/Codes/Details/265804003 +xref: MA:0002313 +xref: NCIT:C53173 +xref: UMLS:C0224295 {source="ncithesaurus:Hand_Interosseous_Muscle"} +is_a: UBERON:0006508 ! interosseous muscle of autopod +is_a: UBERON:0014375 {source="FMA"} ! intrinsic muscle of manus +intersection_of: UBERON:0006508 ! interosseous muscle of autopod +intersection_of: part_of UBERON:0002398 ! manus +relationship: has_muscle_insertion UBERON:0002234 ! proximal phalanx of manus +relationship: has_muscle_origin UBERON:0002374 ! metacarpal bone + +[Term] +id: UBERON:0001503 +name: dorsal interosseous of manus +def: "The dorsal interossei of the hand are muscles that occupy the space between the metacarpals. There are four dorsal interossei in each hand. They are specified as 'dorsal' to contrast them with the palmar interossei, which are located on the anterior side of the metacarpals. The dorsal interosseous muscles are bipennate, with each muscle arising by two heads from the adjacent sides of the metacarpal bones, but more extensively from the metacarpal bone of the finger into which the muscle is inserted. They are inserted into the bases of the proximal phalanges and into the extensor expansion of the corresponding extensor digitorum tendon. The middle digit has two dorsal interossei insert onto it while the first digit (thumb) and the fifth digit (little finger) have none[WP]." [http://en.wikipedia.org/wiki/Dorsal_interossei_muscles_(hand)] +comment: Action: abducts medial digits +synonym: "dorsal hand interosseus muscle" EXACT [MA:0002314] +synonym: "dorsal interosseous muscle of hand" RELATED [FMA:37418] +synonym: "dorsal interosseous of hand" EXACT [FMA:37418] +synonym: "dorsal manus interosseous muscle" EXACT [] +synonym: "musculi interossei dorsales manus" EXACT [] +xref: EMAPA:37519 {source="MA:th"} +xref: FMA:37418 +xref: http://en.wikipedia.org/wiki/Dorsal_interossei_muscles_(hand) +xref: http://linkedlifedata.com/resource/umls/id/C1744530 +xref: http://www.snomedbrowser.com/Codes/Details/245002007 +xref: MA:0002314 +xref: NCIT:C52703 +xref: UMLS:C1744530 {source="ncithesaurus:Dorsal_Hand_Interosseous_Muscle"} +is_a: UBERON:0001502 ! interosseous muscle of manus +relationship: has_muscle_origin UBERON:0010544 {source="dbpedia"} ! metacarpus skeleton + +[Term] +id: UBERON:0001504 +name: lumbrical muscle of pes +def: "The lumbricals are four small skeletal muscles, accessory to the tendons of the flexor digitorum longus and numbered from the medial side of the pes; they arise from these tendons, as far back as their angles of division, each springing from two tendons, except the first." [http://en.wikipedia.org/wiki/Lumbricals_of_the_foot] +synonym: "foot lumbrical" EXACT [FMA:37453] +synonym: "foot lumbrical muscle" EXACT [MA:0002305] +synonym: "lumbrical muscle of foot" RELATED [FMA:37453] +synonym: "lumbrical of foot" EXACT [FMA:37453] +synonym: "pes lumbrical" EXACT [] +synonym: "pes lumbrical muscle" EXACT [] +xref: EMAPA:36263 +xref: FMA:37453 +xref: http://en.wikipedia.org/wiki/Lumbricals_of_the_foot +xref: http://www.snomedbrowser.com/Codes/Details/181715003 +xref: MA:0002305 +is_a: UBERON:0014378 {source="FMA"} ! intrinsic muscle of pes + +[Term] +id: UBERON:0001505 +name: coracobrachialis muscle +def: "The Coracobrachialis is the smallest of the three muscles that attach to the coracoid process of the scapula. (The other two muscles are pectoralis minor and biceps brachii. ) It is situated at the upper and medial part of the arm. It is perforated by and innervated by the musculocutaneous nerve. [WP,unvetted]." [http://en.wikipedia.org/wiki/Coracobrachialis_muscle] +subset: uberon_slim +synonym: "coracobrachial" EXACT [MA:0002282] +synonym: "coracobrachialis" EXACT [] +synonym: "coracobrachialis muscle" RELATED [http://en.wikipedia.org/wiki/Coracobrachialis_muscle] +synonym: "musculus coracobrachialis" RELATED LATIN [http://en.wikipedia.org/wiki/Coracobrachialis_muscle] +synonym: "Pirogoff's aponeurosis" EXACT [FMA:37664] +xref: Coracobrachialis:muscle +xref: EMAPA:36182 +xref: FMA:37664 +xref: http://linkedlifedata.com/resource/umls/id/C0224246 +xref: http://www.snomedbrowser.com/Codes/Details/244980008 +xref: MA:0002282 +xref: NCIT:C53151 +xref: UMLS:C0224246 {source="ncithesaurus:Coracobrachialis"} +is_a: UBERON:0001482 ! muscle of shoulder +is_a: UBERON:0004255 {source="FMA"} ! forelimb stylopod muscle +relationship: has_muscle_insertion UBERON:0000976 {notes="medial humerus", source="dbpedia"} ! humerus +relationship: has_muscle_origin UBERON:0006633 {notes="coracoid process of scapula", source="dbpedia"} ! coracoid process of scapula +relationship: innervated_by UBERON:0003724 {source="dbpedia"} ! musculocutaneous nerve + +[Term] +id: UBERON:0001506 +name: brachialis muscle +def: "The brachialis (brachialis anticus) is a muscle in the upper arm that flexes the elbow joint. It lies just deep of the biceps brachii, and is a synergist that assists the biceps brachii in flexing at the elbow. It makes up part of the floor of the region known as the cubital fossa. [WP,unvetted]." [http://en.wikipedia.org/wiki/Brachialis_muscle] +subset: uberon_slim +synonym: "brachialis" RELATED [http://en.wikipedia.org/wiki/Brachialis_muscle] +synonym: "brachialis anticus muscle" RELATED [http://en.wikipedia.org/wiki/Brachialis_muscle] +synonym: "Casserio's muscle" EXACT [] +synonym: "musculus brachialis" RELATED LATIN [http://en.wikipedia.org/wiki/Brachialis_muscle] +xref: Brachialis:muscle +xref: EHDAA2:0000181 +xref: EHDAA:8281 +xref: EMAPA:19109 +xref: FMA:37667 +xref: http://linkedlifedata.com/resource/umls/id/C0224240 +xref: http://www.snomedbrowser.com/Codes/Details/244982000 +xref: MA:0002271 +xref: NCIT:C53149 +xref: UMLS:C0224240 {source="ncithesaurus:Brachialis"} +xref: VHOG:0001026 +is_a: UBERON:0001482 ! muscle of shoulder +is_a: UBERON:0001499 ! muscle of arm +relationship: has_muscle_insertion UBERON:0010994 {notes="coronoid process and the tuberosity of the ulna", source="dbpedia"} ! coronoid process of ulna +relationship: has_muscle_origin UBERON:0000976 {notes="anterior surface of the humerus particularly the distal half of this bone", source="dbpedia"} ! humerus +relationship: innervated_by UBERON:0003724 {source="dbpedia"} ! musculocutaneous nerve + +[Term] +id: UBERON:0001507 +name: biceps brachii +def: "A muscle in the forelimb stylopod which in humans has several functions, the most important being to rotate the forearm and to flex the elbow. [WP,unvetted]." [http://en.wikipedia.org/wiki/Biceps_brachii_muscle] +subset: pheno_slim +subset: uberon_slim +synonym: "biceps" BROAD [EHDAA2:0000167] +synonym: "biceps brachii %26 brachialis muscles" RELATED [http://en.wikipedia.org/wiki/Biceps_brachii_muscle] +synonym: "biceps brachii muscle" RELATED [http://en.wikipedia.org/wiki/Biceps_brachii_muscle] +synonym: "biceps cubiti" RELATED [http://en.wikipedia.org/wiki/Biceps_brachii_muscle] +synonym: "biceps muscle" RELATED [http://en.wikipedia.org/wiki/Biceps_brachii_muscle] +synonym: "musculus biceps brachii" RELATED LATIN [http://en.wikipedia.org/wiki/Biceps_brachii_muscle] +xref: BTO:0003419 +xref: EHDAA2:0000167 +xref: EHDAA:8279 +xref: EMAPA:19108 +xref: FMA:37670 +xref: http://en.wikipedia.org/wiki/Biceps_brachii_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0559499 +xref: http://www.snomedbrowser.com/Codes/Details/265802004 +xref: MA:0002269 +xref: NCIT:C32200 +xref: UMLS:C0559499 {source="ncithesaurus:Biceps"} +xref: VHOG:0000861 +is_a: UBERON:0004255 ! forelimb stylopod muscle +relationship: has_muscle_antagonist UBERON:0001509 {source="dbpedia"} ! triceps brachii +relationship: has_muscle_insertion UBERON:0001423 {notes="radial tuberosity and bicipittal aponeurosis into deep fascia on medial part of forearm", source="dbpedia"} ! radius bone +relationship: has_muscle_origin UBERON:0006633 {notes="short head: coracoid process of the scapula. long head: supraglenoid tubercle", source="dbpedia"} ! coracoid process of scapula +relationship: has_muscle_origin UBERON:0010760 {notes="short head: coracoid process of the scapula. long head: supraglenoid tubercle", source="dbpedia"} ! supraglenoid tubercle +relationship: innervated_by UBERON:0003724 {notes="Musculocutaneous nerve", source="dbpedia"} ! musculocutaneous nerve + +[Term] +id: UBERON:0001508 +name: arch of aorta +def: "the convex portion of the aorta between the ascending and descending parts of the aorta; branches from it include the brachiocephalic trunk, the left common carotid artery, and the left subclavian artery; the brachiocephalic trunk further splits to form the right subclavian artery and the right common carotid artery" [ISBN:0-683-40008-8, MP:0004113] +subset: pheno_slim +subset: uberon_slim +synonym: "aortic arch" RELATED [FMA:3768] +synonym: "arcus aortae" EXACT LATIN [FMA:3768, FMA:TA] +synonym: "thoracic aorta" RELATED [GAID:471] +xref: BTO:0000157 +xref: EFO:0002526 +xref: EHDAA2:0000132 +xref: EMAPA:17613 +xref: FMA:3768 +xref: GAID:471 +xref: http://en.wikipedia.org/wiki/Arch_of_aorta +xref: http://www.snomedbrowser.com/Codes/Details/181300001 +xref: MA:0000475 +xref: VHOG:0001196 +is_a: UBERON:0001515 ! thoracic aorta +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0001515 ! thoracic aorta +relationship: develops_from UBERON:0003121 {notes="left arch 4 in human", source="embryology.ch"} ! pharyngeal arch artery 4 +relationship: has_developmental_contribution_from UBERON:0005432 ! aortic sac +relationship: has_developmental_contribution_from UBERON:0005613 ! left dorsal aorta + +[Term] +id: UBERON:0001509 +name: triceps brachii +def: "The triceps brachii muscle (Latin for 'three-headed' muscle of the arm, it is called a three headed muscle because there are three bundles of muscle, each of different origin, joining together at the elbow) is the large muscle on the back of the human upper limb. It is the muscle principally responsible for extension of the elbow joint (i.e. straightening of the arm). Though a similarly-named muscle, the triceps surae, is found on the lower leg, the triceps brachii is commonly called simply the 'triceps'. [WP,unvetted]." [http://en.wikipedia.org/wiki/Triceps_brachii_muscle] +comment: Dorsal group derivative that acts on the forearm[Kardong] +subset: pheno_slim +subset: uberon_slim +synonym: "musculus triceps brachii" RELATED LATIN [http://en.wikipedia.org/wiki/Triceps_brachii_muscle] +synonym: "triceps" EXACT [EHDAA2:0002080] +synonym: "triceps brachii muscle" EXACT [http://en.wikipedia.org/wiki/Triceps_brachii_muscle] +synonym: "triceps muscle" RELATED [http://en.wikipedia.org/wiki/Triceps_brachii_muscle] +xref: EHDAA2:0002080 +xref: EHDAA:8287 +xref: EMAPA:19111 +xref: FMA:37688 +xref: http://en.wikipedia.org/wiki/Triceps_brachii_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0559502 +xref: http://www.snomedbrowser.com/Codes/Details/181623009 +xref: MA:0002399 +xref: NCIT:C33812 +xref: NCIT:C90604 +xref: UMLS:C0559502 {source="ncithesaurus:Triceps_Brachii"} +xref: VHOG:0000851 +is_a: UBERON:0001482 ! muscle of shoulder +is_a: UBERON:0004255 ! forelimb stylopod muscle +is_a: UBERON:0034908 ! scapular muscle +relationship: has_muscle_antagonist UBERON:0001507 {source="dbpedia"} ! biceps brachii +relationship: has_muscle_insertion UBERON:0006810 {notes="olecranon process of ulna", source="dbpedia"} ! olecranon +relationship: has_muscle_origin UBERON:0000976 {notes="lateral head: posterior humerus", source="dbpedia"} ! humerus +relationship: has_muscle_origin UBERON:0006849 {notes="long head: infraglenoid tubercle of scapula", source="dbpedia"} ! scapula +relationship: innervated_by UBERON:0001492 {notes="radial nerve and axillary nerve", source="dbpedia"} ! radial nerve +relationship: innervated_by UBERON:0001493 {notes="radial nerve and axillary nerve", source="dbpedia"} ! axillary nerve + +[Term] +id: UBERON:0001510 +name: skin of knee +def: "A zone of skin that is part of a knee [Automatically generated definition]." [OBOL:automatic] +synonym: "knee skin" EXACT [] +synonym: "knee zone of skin" EXACT [OBOL:automatic] +synonym: "zone of skin of knee" EXACT [OBOL:automatic] +xref: EMAPA:18151 +xref: FMA:37800 +xref: http://linkedlifedata.com/resource/umls/id/C0222275 +xref: http://www.snomedbrowser.com/Codes/Details/181552001 +xref: MA:0000668 +xref: NCIT:C64859 +xref: UMLS:C0222275 {source="ncithesaurus:Knee_Skin"} +is_a: UBERON:0001511 ! skin of leg +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0001465 ! knee +relationship: part_of UBERON:0001465 ! knee + +[Term] +id: UBERON:0001511 +name: skin of leg +def: "A zone of skin that is part of a leg [Automatically generated definition]." [OBOL:automatic] +synonym: "leg skin" EXACT [] +synonym: "leg zone of skin" EXACT [OBOL:automatic] +synonym: "zone of skin of leg" EXACT [OBOL:automatic] +xref: EMAPA:18156 +xref: EMAPA:18159 +xref: EMAPA:37352 {source="MA:th"} +xref: FMA:37828 +xref: http://linkedlifedata.com/resource/umls/id/C0222279 +xref: MA:0000674 +xref: NCIT:C52749 +xref: UMLS:C0222279 {source="ncithesaurus:Leg_Skin"} +is_a: UBERON:0003532 ! hindlimb skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0000978 ! leg +relationship: part_of UBERON:0000978 ! leg + +[Term] +id: UBERON:0001512 +name: skin of ankle +def: "A zone of skin that is part of an ankle [Automatically generated definition]." [OBOL:automatic] +synonym: "ankle skin" EXACT [] +synonym: "ankle zone of skin" EXACT [OBOL:automatic] +synonym: "tarsal region skin" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "zone of skin of ankle" EXACT [OBOL:automatic] +xref: EMAPA:37353 {source="MA:th"} +xref: FMA:37831 +xref: http://linkedlifedata.com/resource/umls/id/C0222286 +xref: http://www.snomedbrowser.com/Codes/Details/181560000 +xref: MA:0000641 +xref: NCIT:C52751 +xref: UMLS:C0222286 {source="ncithesaurus:Ankle_Skin"} +is_a: UBERON:0001513 ! skin of pes +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0004454 ! tarsal region +relationship: part_of UBERON:0004454 ! tarsal region + +[Term] +id: UBERON:0001513 +name: skin of pes +def: "A zone of skin that is part of a pes [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "foot skin" EXACT [] +synonym: "skin of foot" EXACT [FMA:37834] +synonym: "skin of hind-paw" NARROW SENSU [EMAPA:18504] +xref: EMAPA:18504 +xref: FMA:37834 +xref: http://linkedlifedata.com/resource/umls/id/C0222289 +xref: http://www.snomedbrowser.com/Codes/Details/181529000 +xref: MA:0000654 +xref: NCIT:C52750 +xref: UMLS:C0222289 {source="ncithesaurus:Foot_Skin"} +is_a: UBERON:0003532 {source="MA"} ! hindlimb skin +is_a: UBERON:0015790 ! autopod skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0002387 ! pes +relationship: part_of UBERON:0002387 ! pes + +[Term] +id: UBERON:0001514 +name: descending aorta +def: "The descending aorta is the portion of the aorta in a two-pass circulatory system from the arch of aorta to the point where it divides into the common iliac arteries[GO]. The descending aorta is part of the aorta, the largest artery in the body. The descending aorta is the part of the aorta beginning at the aortic arch that runs down through the chest and abdomen. The descending aorta is divided into two portions, the thoracic and abdominal, in correspondence with the two great cavities of the trunk in which it is situated. Within the abdomen, the descending aorta branches into the two common iliac arteries which serve the legs. [WP,unvetted]." [GO:0035906, http://en.wikipedia.org/wiki/Descending_aorta] +subset: pheno_slim +subset: uberon_slim +synonym: "aorta descendens" RELATED LATIN [http://en.wikipedia.org/wiki/Descending_aorta] +synonym: "aorta descendens" RELATED [http://en.wikipedia.org/wiki/Descending_aorta] +synonym: "pars descendens aortae" EXACT [FMA:3784] +synonym: "pars descendens aortae" RELATED LATIN [http://en.wikipedia.org/wiki/Descending_aorta] +xref: Descending:aorta +xref: EMAPA:18606 +xref: FMA:3784 +xref: http://linkedlifedata.com/resource/umls/id/C0011666 +xref: http://www.snomedbrowser.com/Codes/Details/261399002 +xref: MA:0002571 +xref: NCIT:C32455 +xref: OpenCyc:Mx4rv4EE35wpEbGdrcN5Y29ycA +xref: UMLS:C0011666 {source="ncithesaurus:Descending_Aorta"} +is_a: UBERON:0005800 {source="FMA"} ! section of aorta +relationship: develops_from UBERON:0005805 {source="Wikipedia"} ! dorsal aorta +relationship: has_developmental_contribution_from UBERON:0005613 ! left dorsal aorta +relationship: has_developmental_contribution_from UBERON:0005622 ! right dorsal aorta + +[Term] +id: UBERON:0001515 +name: thoracic aorta +def: "the part of the aorta that extends from the origin at the heart to the diaphragm, and from which arises numerous branches that supply oxygenated blood to the chest cage and the organs within the chest" [http://www.medterms.com, MP:0010468] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "aorta thoracalis" RELATED LATIN [http://en.wikipedia.org/wiki/Thoracic_aorta] +synonym: "aorta thoracica" EXACT LATIN [FMA:3786, FMA:TA] +synonym: "pars thoracica aortae" RELATED LATIN [http://en.wikipedia.org/wiki/Thoracic_aorta] +synonym: "thoracic part of aorta" EXACT [] +xref: BTO:0000157 +xref: EFO:0002525 +xref: EMAPA:18603 +xref: FMA:3786 +xref: GAID:471 +xref: galen:ThoracicAorta +xref: http://linkedlifedata.com/resource/umls/id/C1522460 +xref: http://www.snomedbrowser.com/Codes/Details/302510009 +xref: MA:0002569 +xref: MESH:D001013 +xref: NCIT:C33766 +xref: OpenCyc:Mx4rveb9TpwpEbGdrcN5Y29ycA +xref: Thoracic:aorta +xref: UMLS:C1522460 {source="ncithesaurus:Thoracic_Aorta"} +is_a: UBERON:0005800 {source="FMA"} ! section of aorta +intersection_of: UBERON:0005800 ! section of aorta +intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk +relationship: contributes_to_morphology_of UBERON:0000947 ! aorta +relationship: part_of UBERON:0000915 ! thoracic segment of trunk + +[Term] +id: UBERON:0001516 +name: abdominal aorta +def: "Abdominal part of aorta: the distal part of the descending aorta, which is the continuation of the thoracic part and gives rise to the inferior phrenic, lumbar, median sacral, superior and inferior mesenteric, middle suprarenal, renal, and testicular or ovarian arteries, and celiac trunk[BTO]. The abdominal aorta is the largest artery in the abdominal cavity. As part of the aorta, it is a direct continuation of descending aorta(of the thorax). [WP,unvetted]." [BTO:0002976, http://en.wikipedia.org/wiki/Abdominal_aorta] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "abdominal part of aorta" EXACT [FMA:3789] +synonym: "abdominal part of aorta" RELATED [BTO:0002976] +synonym: "aorta abdominalis" RELATED LATIN [http://en.wikipedia.org/wiki/Abdominal_aorta] +synonym: "aorta abdominalis" RELATED [BTO:0002976] +synonym: "descending abdominal aorta" EXACT [FMA:3789] +synonym: "pars abdominalis aortae" EXACT [FMA:3789] +synonym: "pars abdominalis aortae" RELATED LATIN [http://en.wikipedia.org/wiki/Abdominal_aorta] +synonym: "pars abdominalis aortae" RELATED [BTO:0002976] +xref: Abdominal:aorta +xref: BTO:0002976 +xref: EFO:0002524 +xref: EMAPA:17856 +xref: FMA:3789 +xref: GAID:470 +xref: galen:AbdominalAorta +xref: http://linkedlifedata.com/resource/umls/id/C0003484 +xref: http://www.snomedbrowser.com/Codes/Details/244231007 +xref: MA:0000474 +xref: MESH:D001012 +xref: NCIT:C32038 +xref: OpenCyc:Mx4rvYhWCZwpEbGdrcN5Y29ycA +xref: UMLS:C0003484 {source="ncithesaurus:Abdominal_Aorta"} +is_a: UBERON:0005800 ! section of aorta +relationship: contributes_to_morphology_of UBERON:0001514 ! descending aorta +relationship: part_of UBERON:0001514 {source="FMA"} ! descending aorta + +[Term] +id: UBERON:0001517 +name: skin of elbow +alt_id: UBERON:0003399 +def: "A zone of skin that is part of a elbow [Automatically generated definition]." [OBOL:automatic] +synonym: "cubital region zone of skin" EXACT [OBOL:automatic] +synonym: "elbow skin" EXACT [] +synonym: "elbow zone of skin" EXACT [OBOL:automatic] +synonym: "zone of skin of cubital region" EXACT [OBOL:automatic] +synonym: "zone of skin of elbow" EXACT [OBOL:automatic] +xref: EMAPA:18051 +xref: FMA:38250 +xref: http://linkedlifedata.com/resource/umls/id/C0222213 +xref: http://www.snomedbrowser.com/Codes/Details/181534001 +xref: MA:0000610 +xref: NCIT:C52755 +xref: UMLS:C0222213 {source="ncithesaurus:Elbow_Skin"} +is_a: UBERON:0002427 ! arm skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0001461 ! elbow +relationship: part_of UBERON:0001461 ! elbow + +[Term] +id: UBERON:0001518 +name: skin of wrist +def: "A zone of skin that is part of a wrist [Automatically generated definition]." [OBOL:automatic] +synonym: "carpal region zone of skin" EXACT [OBOL:automatic] +synonym: "wrist skin" EXACT [] +synonym: "wrist zone of skin" EXACT [OBOL:automatic] +synonym: "zone of skin of carpal region" EXACT [OBOL:automatic] +synonym: "zone of skin of wrist" EXACT [OBOL:automatic] +xref: EMAPA:37351 {source="MA:th"} +xref: FMA:38280 +xref: http://linkedlifedata.com/resource/umls/id/C0222223 +xref: http://www.snomedbrowser.com/Codes/Details/181540008 +xref: MA:0000638 +xref: NCIT:C52752 +xref: UMLS:C0222223 {source="ncithesaurus:Wrist_Skin"} +is_a: UBERON:0001519 ! skin of manus +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0004452 ! carpal region +relationship: part_of UBERON:0004452 ! carpal region + +[Term] +id: UBERON:0001519 +name: skin of manus +def: "A zone of skin that is part of a manus [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "hand skin" EXACT [MA:0000630] +synonym: "manus skin" EXACT [] +synonym: "skin of fore-paw" NARROW SENSU [EMAPA:18486] +synonym: "skin of hand" EXACT [FMA:38295] +xref: EMAPA:18486 +xref: FMA:38295 +xref: http://linkedlifedata.com/resource/umls/id/C0222224 +xref: http://www.snomedbrowser.com/Codes/Details/181527003 +xref: MA:0000630 +xref: NCIT:C52753 +xref: UMLS:C0222224 {source="ncithesaurus:Hand_Skin"} +is_a: UBERON:0003531 ! forelimb skin +is_a: UBERON:0015790 ! autopod skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0002398 ! manus +relationship: part_of UBERON:0002398 ! manus + +[Term] +id: UBERON:0001520 +name: pronator teres +def: "The pronator teres is a muscle of the human body (located mainly in the forearm) that, along with the pronator quadratus, serves to pronate the forearm (turning it so the palm faces posteriorly). [WP,unvetted]." [http://en.wikipedia.org/wiki/Pronator_teres_muscle] +subset: uberon_slim +synonym: "musculus pronator teres" RELATED LATIN [http://en.wikipedia.org/wiki/Pronator_teres_muscle] +synonym: "pronator teres muscle" RELATED [http://en.wikipedia.org/wiki/Pronator_teres_muscle] +xref: EMAPA:36207 +xref: FMA:38450 +xref: http://en.wikipedia.org/wiki/Pronator_teres_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224249 +xref: http://www.snomedbrowser.com/Codes/Details/302514000 +xref: MA:0002357 +xref: NCIT:C53174 +xref: UMLS:C0224249 {source="ncithesaurus:Pronator_Teres"} +is_a: UBERON:0003662 ! forelimb muscle +relationship: has_muscle_antagonist UBERON:0003228 {source="dbpedia"} ! supinator muscle +relationship: has_muscle_insertion UBERON:0001028 {notes="Middle of the lateral surface of the body of the radius", source="dbpedia"} ! diaphysis of radius +relationship: has_muscle_origin UBERON:0006806 {notes="humeral head: medial epicondyle of humerus ulnar head: coronoid process of ulna", source="dbpedia"} ! entepicondyle of humerus +relationship: has_muscle_origin UBERON:0010994 {notes="humeral head: medial epicondyle of humerus ulnar head: coronoid process of ulna", source="dbpedia"} ! coronoid process of ulna +relationship: innervated_by UBERON:0001148 {source="dbpedia"} ! median nerve + +[Term] +id: UBERON:0001521 +name: flexor carpi radialis muscle +def: "A muscle of the forearm that acts to flex and abduct the manus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Flexor_carpi_radialis_muscle] +subset: uberon_slim +synonym: "flexor carpi radialis" EXACT [MA:0002297] +xref: AAO:0010733 +xref: EMAPA:36197 +xref: FMA:38459 +xref: http://en.wikipedia.org/wiki/Flexor_carpi_radialis_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224252 +xref: http://www.snomedbrowser.com/Codes/Details/361816002 +xref: MA:0002297 +xref: NCIT:C53155 +xref: UMLS:C0224252 {source="ncithesaurus:Flexor_Carpi_Radialis"} +is_a: UBERON:0000366 ! flexor muscle +is_a: UBERON:0004254 ! forelimb zeugopod muscle +relationship: has_muscle_insertion UBERON:0002374 {notes="2 and 3 in human"} ! metacarpal bone +relationship: has_muscle_origin UBERON:0006806 ! entepicondyle of humerus + +[Term] +id: UBERON:0001522 +name: flexor carpi ulnaris muscle +def: "The flexor carpi ulnaris muscle (FCU) is a muscle of the human forearm that acts to flex and adduct the manus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Flexor_carpi_ulnaris_muscle] +subset: uberon_slim +synonym: "flexor carpi ulnaris" EXACT [http://en.wikipedia.org/wiki/Flexor_carpi_ulnaris_muscle] +synonym: "musculus flexor carpi ulnaris" RELATED LATIN [http://en.wikipedia.org/wiki/Flexor_carpi_ulnaris_muscle] +xref: EMAPA:36198 +xref: FMA:38465 +xref: http://en.wikipedia.org/wiki/Flexor_carpi_ulnaris_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224254 +xref: http://www.snomedbrowser.com/Codes/Details/244985003 +xref: MA:0002298 +xref: NCIT:C53156 +xref: UMLS:C0224254 {source="ncithesaurus:Flexor_Carpi_Ulnaris"} +is_a: UBERON:0000366 ! flexor muscle +is_a: UBERON:0004254 ! forelimb zeugopod muscle +relationship: has_muscle_insertion UBERON:0001429 {source="dbpedia"} ! pisiform +relationship: has_muscle_origin UBERON:0006806 {notes="medial epicondyle", source="dbpedia"} ! entepicondyle of humerus + +[Term] +id: UBERON:0001523 +name: flexor digitorum profundus +def: "A muscle in the forearm that flexes the manual digits[WP,modified]." [http://en.wikipedia.org/wiki/Flexor_digitorum_profundus_muscle] +subset: uberon_slim +synonym: "flexor digitorum profundus muscle" EXACT [http://en.wikipedia.org/wiki/Flexor_digitorum_profundus_muscle] +synonym: "musculus flexor digitorum profundus" RELATED LATIN [http://en.wikipedia.org/wiki/Flexor_digitorum_profundus_muscle] +xref: BTO:0001246 +xref: EMAPA:19319 +xref: FMA:38478 +xref: http://en.wikipedia.org/wiki/Flexor_digitorum_profundus_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224261 +xref: MA:0002300 +xref: NCIT:C52923 +xref: UMLS:C0224261 {source="ncithesaurus:Flexor_Digitorum_Profundus"} +is_a: UBERON:0000366 {source="BTO"} ! flexor muscle +is_a: UBERON:0004255 ! forelimb stylopod muscle +relationship: has_muscle_antagonist UBERON:0007612 {source="dbpedia"} ! extensor digitorum communis +relationship: has_muscle_insertion UBERON:0004300 {notes="base of the distal phalanges of the fingers", source="dbpedia"} ! distal phalanx +relationship: has_muscle_origin UBERON:0001010 {notes="upper 3/4 of the volar and medial surfaces of the body of the ulna interosseous membrane and deep fascia of the forearm", source="dbpedia"} ! diaphysis of ulna + +[Term] +id: UBERON:0001524 +name: extensor carpi radialis longus muscle +def: "Extensor carpi radialis longus is one of the five main muscles that control movements at the wrist. This muscle is quite long, starting on the lateral side of the humerus, and attaching to the base of the second metacarpal bone (metacarpal of the index finger). [WP,unvetted]." [http://en.wikipedia.org/wiki/Extensor_carpi_radialis_longus_muscle] +subset: uberon_slim +synonym: "extensor carpi radialis longus" EXACT [MA:0002291] +synonym: "musculus extensor carpi radialis longus" RELATED LATIN [http://en.wikipedia.org/wiki/Extensor_carpi_radialis_longus_muscle] +xref: EMAPA:36189 +xref: FMA:38494 +xref: http://en.wikipedia.org/wiki/Extensor_carpi_radialis_longus_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224266 +xref: http://www.snomedbrowser.com/Codes/Details/244990000 +xref: MA:0002291 +xref: NCIT:C52913 +xref: UMLS:C0224266 {source="ncithesaurus:Extensor_Carpi_Radialis_Longus"} +is_a: UBERON:0011867 ! extensor carpi radialis muscle +relationship: has_muscle_insertion UBERON:0003646 {notes="base", source="dbpedia"} ! metacarpal bone of digit 2 +relationship: has_muscle_origin UBERON:0004404 {notes="lateral supracondylar ridge", source="dbpedia"} ! distal epiphysis of humerus + +[Term] +id: UBERON:0001525 +name: extensor carpi radialis brevis muscle +def: "The Extensor carpi radialis brevis is shorter and thicker than the extensor carpi radialis longus. The longus muscle can be found above the distal end of the Extensor carpi radialis brevis. [WP,unvetted]." [http://en.wikipedia.org/wiki/Extensor_carpi_radialis_brevis_muscle] +subset: uberon_slim +synonym: "extensor carpi radialis brevis" EXACT [MA:0002290] +synonym: "musculus extensor carpi radialis brevis" EXACT LATIN [http://en.wikipedia.org/wiki/Extensor_carpi_radialis_brevis_muscle] +xref: EMAPA:36188 +xref: FMA:38497 +xref: http://en.wikipedia.org/wiki/Extensor_carpi_radialis_brevis_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224267 +xref: http://www.snomedbrowser.com/Codes/Details/244991001 +xref: MA:0002290 +xref: NCIT:C52911 +xref: UMLS:C0224267 {source="ncithesaurus:Extensor_Carpi_Radialis_Brevis"} +is_a: UBERON:0011867 ! extensor carpi radialis muscle +relationship: has_muscle_insertion UBERON:0003647 {notes="base", source="dbpedia"} ! metacarpal bone of digit 3 +relationship: has_muscle_origin UBERON:0006807 {source="dbpedia"} ! ectepicondyle of humerus + +[Term] +id: UBERON:0001526 +name: extensor carpi ulnaris muscle +def: "Extensor carpi ulnaris is a muscle located in the forearm that acts to extend and adduct the wrist. Being an extensor muscle, extensor carpi ulnaris is on the posterior side of the forearm. [WP]." [http://en.wikipedia.org/wiki/Extensor_carpi_ulnaris_muscle] +subset: uberon_slim +synonym: "ECU muscle" EXACT [] +synonym: "extensor carpi ulnaris" EXACT [] +synonym: "musculus extensor carpi ulnaris" EXACT [] +xref: AAO:0010281 +xref: EMAPA:36190 +xref: FMA:38506 +xref: http://en.wikipedia.org/wiki/Extensor_carpi_ulnaris_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224272 +xref: http://www.snomedbrowser.com/Codes/Details/244992008 +xref: MA:0002292 +xref: NCIT:C52914 +xref: UMLS:C0224272 {source="ncithesaurus:Extensor_Carpi_Ulnaris"} +is_a: UBERON:0011024 {source="Wikipedia"} ! extrinsic extensor muscle of manus +relationship: has_muscle_origin UBERON:0006807 ! ectepicondyle of humerus +relationship: innervated_by UBERON:0001492 {notes="deep part", source="dbpedia"} ! radial nerve + +[Term] +id: UBERON:0001527 +name: abductor pollicis longus +def: "The Abductor pollicis longus lies immediately below the Supinator and is sometimes united with it. [WP,unvetted]." [http://en.wikipedia.org/wiki/Abductor_pollicis_longus_muscle] +subset: uberon_slim +synonym: "abductor pollicis longus muscle" RELATED [http://en.wikipedia.org/wiki/Abductor_pollicis_longus_muscle] +synonym: "musculus abductor pollicis longus" RELATED LATIN [http://en.wikipedia.org/wiki/Abductor_pollicis_longus_muscle] +xref: EMAPA:36210 +xref: FMA:38515 +xref: http://en.wikipedia.org/wiki/Abductor_pollicis_longus_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224278 +xref: http://www.snomedbrowser.com/Codes/Details/256671001 +xref: MA:0002266 +xref: NCIT:C52888 +xref: UMLS:C0224278 {source="ncithesaurus:Abductor_Pollicis_Longus"} +is_a: UBERON:0011534 ! abductor pollicis muscle +relationship: has_muscle_antagonist UBERON:0002962 {source="dbpedia"} ! adductor pollicis muscle +relationship: has_muscle_insertion UBERON:0003645 ! metacarpal bone of digit 1 +relationship: has_muscle_origin UBERON:0001424 {source="dbpedia"} ! ulna + +[Term] +id: UBERON:0001528 +name: radio-ulnar joint +def: "A joint that connects the radius and the ulna. Examples: proximal and distal radio-ulnar joints" [https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "articulation of the radus and ulna" EXACT [] +synonym: "radioulnar articulation" RELATED [] +synonym: "radioulnar joint" EXACT [FMA:38863] +xref: EMAPA:19206 +xref: FMA:38863 +xref: http://www.snomedbrowser.com/Codes/Details/264167003 +xref: MA:0003145 +xref: OpenCyc:Mx4rvlO2nJwpEbGdrcN5Y29ycA +is_a: UBERON:0003839 ! forelimb joint +is_a: UBERON:0011139 {source="FMA"} ! synovial limb joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001423 ! radius bone +intersection_of: connects UBERON:0001424 ! ulna +relationship: connects UBERON:0001423 ! radius bone +relationship: connects UBERON:0001424 ! ulna +relationship: part_of UBERON:0002386 ! forelimb zeugopod + +[Term] +id: UBERON:0001529 +name: brachiocephalic artery +def: "the short first aortic arch branch and divides into the right subclavian artery and the right common carotid artery" [MGI:csmith, MP:0010663] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "brachiocephalic trunk" EXACT [MA:0001922] +synonym: "innominate" BROAD [http://en.wikipedia.org/wiki/Brachiocephalic_artery] +synonym: "innominate artery" EXACT [http://en.wikipedia.org/wiki/Brachiocephalic_artery] +synonym: "truncus brachiocephalicus" EXACT LATIN [FMA:3932, FMA:TA] +synonym: "truncus brachiocephalicus" RELATED LATIN [http://en.wikipedia.org/wiki/Brachiocephalic_artery] +xref: Brachiocephalic:artery +xref: EFO:0002550 +xref: EHDAA2:0000835 +xref: EMAPA:17615 +xref: FMA:3932 +xref: GAID:476 +xref: galen:BrachioCephalicArtery +xref: http://linkedlifedata.com/resource/umls/id/C0006094 +xref: http://www.snomedbrowser.com/Codes/Details/244244002 +xref: MA:0001922 +xref: MESH:D016122 +xref: NCIT:C32814 +xref: OpenCyc:Mx4rv9mMTpwpEbGdrcN5Y29ycA +xref: UMLS:C0006094 {source="ncithesaurus:Innominate_Artery"} +is_a: UBERON:0004573 ! systemic artery +relationship: channels_from UBERON:0001508 ! arch of aorta +relationship: part_of UBERON:0007204 ! brachiocephalic vasculature + +[Term] +id: UBERON:0001530 +name: common carotid artery plus branches +def: "A bilaterally paired branched artery that originates from the aortic arches and divides into and includes as parts the internal and external carotid arteries[cjm]." [http://en.wikipedia.org/wiki/Common_carotid_artery] +subset: pheno_slim +subset: uberon_slim +synonym: "a. carotis communis" RELATED LATIN [http://en.wikipedia.org/wiki/Common_carotid_artery] +synonym: "carotid artery" BROAD [FMA:3939] +synonym: "carotid artery system" EXACT [EHDAA2:0000217] +synonym: "common carotid artery" EXACT INCONSISTENT [FMA:3939] +synonym: "trunk of common carotid tree" EXACT [FMA:3939] +xref: CALOHA:TS-0116 +xref: EHDAA2:0000217 +xref: EHDAA:7331 +xref: EMAPA:17855 +xref: FMA:3939 +xref: GAID:479 +xref: http://en.wikipedia.org/wiki/Common_carotid_artery +xref: http://linkedlifedata.com/resource/umls/id/C0162859 +xref: http://www.snomedbrowser.com/Codes/Details/362041005 +xref: MA:0001926 +xref: MESH:D017536 +xref: NCIT:C32352 +xref: UMLS:C0162859 {source="ncithesaurus:Common_Carotid_Artery"} +xref: VHOG:0000272 +is_a: UBERON:0004573 {source="FMA"} ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0004363 {source="Wikipedia"} ! pharyngeal arch artery +relationship: existence_starts_during UBERON:0000068 ! embryo stage + +[Term] +id: UBERON:0001531 +name: right common carotid artery plus branches +def: "The rightmost of the two common carotid arteries, originating from in the neck from the brachiocephalic trunk." [UBERON:cjm] +subset: uberon_slim +synonym: "right common carotid artery" EXACT [MA:0001928] +synonym: "right common carotid artery" RELATED [FMA:3941] +synonym: "trunk of right common carotid tree" EXACT [FMA:3941] +xref: EMAPA:35749 +xref: FMA:3941 +xref: http://en.wikipedia.org/wiki/Right_common_carotid_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226086 +xref: http://www.snomedbrowser.com/Codes/Details/362042003 +xref: MA:0001928 +xref: NCIT:C33473 +xref: OpenCyc:Mx4rtW9-AqgEEdudWQACs5b6Bw +xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvg7rcJwpEbGdrcN5Y29ycA +xref: UMLS:C0226086 {source="ncithesaurus:Right_Common_Carotid_Artery"} +is_a: UBERON:0001530 {source="FMA"} ! common carotid artery plus branches + +[Term] +id: UBERON:0001532 +name: internal carotid artery +def: "A terminal branch of the left or right common carotid artery which supplies oxygenated blood to the brain and eyes[MP]" [MGI:anna] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "arteria carotis interna" RELATED LATIN [http://en.wikipedia.org/wiki/Internal_carotid_artery] +synonym: "cranial carotid artery" EXACT [ZFA:0005081] +synonym: "ICA" RELATED ABBREVIATION [] +synonym: "internal carotid" EXACT [AAO:0010219] +xref: AAO:0010219 +xref: AAO:0011054 +xref: BTO:0004697 +xref: EFO:0001952 +xref: EHDAA2:0000873 +xref: EHDAA:408 +xref: EHDAA:6389 +xref: EMAPA:16328 +xref: FMA:3947 +xref: GAID:481 +xref: http://en.wikipedia.org/wiki/Internal_carotid_artery +xref: http://linkedlifedata.com/resource/umls/id/C0007276 +xref: http://www.snomedbrowser.com/Codes/Details/362045001 +xref: MA:0001930 +xref: MESH:D002343 +xref: NCIT:C32836 +xref: OpenCyc:Mx4rvYx8KZwpEbGdrcN5Y29ycA +xref: TAO:0005081 +xref: UMLS:C0007276 {source="ncithesaurus:Internal_Carotid_Artery"} +xref: VHOG:0000267 +xref: XAO:0000366 +xref: ZFA:0005081 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0005396 {source="MA"} ! carotid artery segment +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: branching_part_of UBERON:0001530 {source="FMA"} ! common carotid artery plus branches +relationship: develops_from UBERON:2001053 {source="cjm"} ! future internal carotid artery +relationship: part_of UBERON:0001530 ! common carotid artery plus branches +relationship: supplies UBERON:0000955 ! brain +relationship: supplies UBERON:0000970 ! eye + +[Term] +id: UBERON:0001533 +name: subclavian artery +def: "One of two laterally paired arteries that supplies the pectoral appendages, usually branching from the dorsal aorta" [https://orcid.org/0000-0002-6601-2165, ISBN:0073040584] +subset: pheno_slim +subset: uberon_slim +subset: unverified_taxonomic_grouping +subset: vertebrate_core +synonym: "arteria subclavia" EXACT LATIN [XAO:0000365] +synonym: "arteria subclavia" RELATED LATIN [http://en.wikipedia.org/wiki/Subclavian_artery] +synonym: "arterial tree of upper limb" EXACT [] +synonym: "PA" RELATED ABBREVIATION [] +synonym: "pectoral artery" EXACT [] +synonym: "subclavian arterial tree" EXACT [] +xref: AAO:0010232 +xref: EHDAA2:0001933 +xref: EHDAA:4357 +xref: EMAPA:17617 +xref: FMA:3951 +xref: GAID:511 +xref: http://linkedlifedata.com/resource/umls/id/C0038530 +xref: http://www.snomedbrowser.com/Codes/Details/265790007 +xref: MA:0002045 +xref: MESH:D013348 +xref: NCIT:C33643 +xref: OpenCyc:Mx4rvp8u1JwpEbGdrcN5Y29ycA +xref: Subclavian:artery +xref: TAO:0005086 +xref: UMLS:C0038530 {source="ncithesaurus:Subclavian_Artery"} +xref: XAO:0000365 +xref: ZFA:0005086 +is_a: UBERON:0004573 ! systemic artery +relationship: develops_from UBERON:0002457 {source="EHDAA2"} ! intersomitic artery +relationship: develops_from UBERON:0005622 {source="EHDAA2"} ! right dorsal aorta +relationship: supplies UBERON:0004710 ! pectoral appendage + +[Term] +id: UBERON:0001534 +name: right subclavian artery +def: "The subclavian artery that supplies the right pectoral appendage" [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "arteria subclavia dextra" EXACT LATIN [FMA:3953, FMA:TA] +xref: EHDAA2:0004514 +xref: EMAPA:37384 {source="MA:th"} +xref: FMA:3953 +xref: http://linkedlifedata.com/resource/umls/id/C0226261 +xref: http://www.snomedbrowser.com/Codes/Details/244246000 +xref: MA:0002047 +xref: NCIT:C33490 +xref: OpenCyc:Mx4rtW7hwqgEEdudWQACs5b6Bw +xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvp8u1JwpEbGdrcN5Y29ycA +xref: Subclavian:artery +xref: UMLS:C0226261 {source="ncithesaurus:Right_Subclavian_Artery"} +is_a: UBERON:0001533 ! subclavian artery +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0001533 ! subclavian artery +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: in_right_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0001535 +name: vertebral artery +def: "the first branch of the left and right subclavian arteries that merge to form the single midline basilar artery; branches of the vertebral arteries supply the musculature of the neck" [ISBN:0-683-40008-8, MP:0011513] +comment: The two vertebral arteries and the basilar artery are sometimes together called the vertebrobasilar system, which supplies blood to the posterior part of circle of Willis and anastomoses with blood supplied to the anterior part of the circle of Willis from the carotid arteries. [WP,unvetted] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "arteria vertebralis" RELATED LATIN [http://en.wikipedia.org/wiki/Vertebral_artery] +synonym: "vertebral arteries" RELATED PLURAL [ZFA:0005033] +xref: EHDAA2:0002192 +xref: EHDAA:5328 +xref: EMAPA:17314 +xref: FMA:3956 +xref: GAID:518 +xref: http://linkedlifedata.com/resource/umls/id/C0042559 +xref: http://www.snomedbrowser.com/Codes/Details/181323003 +xref: MA:0002077 +xref: MESH:D014711 +xref: NCIT:C12819 +xref: OpenCyc:Mx4rvg_ir5wpEbGdrcN5Y29ycA +xref: TAO:0005033 +xref: UMLS:C0042559 {source="ncithesaurus:Vertebral_Artery"} +xref: Vertebral:artery +xref: VHOG:0000263 +xref: ZFA:0005033 +is_a: UBERON:0002458 ! spinal artery +relationship: branching_part_of UBERON:0001533 ! subclavian artery +relationship: part_of UBERON:0001533 ! subclavian artery + +[Term] +id: UBERON:0001536 +name: left common carotid artery plus branches +def: "The leftmost of the two common carotid arteries, originating from the aortic arch in the thorax." [UBERON:cjm] +subset: uberon_slim +synonym: "left common carotid artery" EXACT [MA:0001927] +synonym: "left common carotid artery" RELATED [FMA:4058] +synonym: "trunk of left common carotid tree" EXACT [FMA:4058] +xref: EMAPA:35491 +xref: FMA:4058 +xref: http://en.wikipedia.org/wiki/Left_common_carotid_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226087 +xref: http://www.snomedbrowser.com/Codes/Details/362043008 +xref: MA:0001927 +xref: NCIT:C32956 +xref: OpenCyc:Mx4rdz4xcLVIEduAAAAOpmP6tw +xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvg7rcJwpEbGdrcN5Y29ycA +xref: UMLS:C0226087 {source="ncithesaurus:Left_Common_Carotid_Artery"} +is_a: UBERON:0001530 {source="FMA"} ! common carotid artery plus branches + +[Term] +id: UBERON:0001537 +name: anterior tibial artery +def: "The anterior tibial artery of the lower limb carries blood to the anterior compartment of the leg and dorsal surface of the foot, from the popliteal artery. It is accompanied by a deep vein, the anterior tibial vein, along its course. It crosses the anterior aspect of the ankle joint, at which point it becomes the dorsalis pedis artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/Anterior_tibial_artery] +subset: uberon_slim +synonym: "arteria tibialis anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_tibial_artery] +xref: EMAPA:37071 {source="MA:th"} +xref: FMA:43894 +xref: http://en.wikipedia.org/wiki/Anterior_tibial_artery +xref: http://linkedlifedata.com/resource/umls/id/C0085816 +xref: http://www.snomedbrowser.com/Codes/Details/181357006 +xref: MA:0002574 +xref: NCIT:C12825 +xref: OpenCyc:Mx4rvaHcEZwpEbGdrcN5Y29ycA +xref: UMLS:C0085816 {source="ncithesaurus:Anterior_Tibial_Artery"} +is_a: UBERON:0007610 ! tibial artery +disjoint_from: UBERON:0001538 {source="lexical"} ! posterior tibial artery + +[Term] +id: UBERON:0001538 +name: posterior tibial artery +def: "The posterior tibial artery of the lower limb carries blood to the posterior compartment of the leg and plantar surface of the foot, from the popliteal artery. It is accompanied by a deep vein, the posterior tibial vein, along its course. [WP,unvetted]." [http://en.wikipedia.org/wiki/Posterior_tibial_artery] +subset: uberon_slim +synonym: "arteria tibialis posterior" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_tibial_artery] +xref: EMAPA:37110 {source="MA:th"} +xref: FMA:43895 +xref: http://en.wikipedia.org/wiki/Posterior_tibial_artery +xref: http://linkedlifedata.com/resource/umls/id/C0086835 +xref: http://www.snomedbrowser.com/Codes/Details/181358001 +xref: MA:0002575 +xref: NCIT:C12826 +xref: OpenCyc:Mx4rwLSaQ5wpEbGdrcN5Y29ycA +xref: UMLS:C0086835 {source="ncithesaurus:Posterior_Tibial_Artery"} +is_a: UBERON:0007610 ! tibial artery + +[Term] +id: UBERON:0001539 +name: dorsalis pedis artery +def: "A blood vessel of the lower limb that carries oxygenated blood to the dorsal surface of the foot. It arises at the anterior aspect of the ankle joint and is a continuation of the anterior tibial artery. It terminates at the proximal part of the first intermetatarsal space, where it divides into two branches, the first dorsal metatarsal artery and the deep plantar artery. Along its course, it is accompanied by a deep vein, the dorsalis pedis vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Dorsalis_pedis_artery] +subset: uberon_slim +synonym: "arteria dorsalis pedis" EXACT LATIN [FMA:43915, FMA:TA] +synonym: "arteria dorsalis pedis" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsalis_pedis_artery] +synonym: "dorsal artery of foot" EXACT [http://en.wikipedia.org/wiki/Dorsalis_pedis_artery] +xref: EMAPA:37077 {source="MA:th"} +xref: FMA:43915 +xref: galen:DorsalisPedisArtery +xref: http://en.wikipedia.org/wiki/Dorsalis_pedis_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226492 +xref: http://www.snomedbrowser.com/Codes/Details/181362007 +xref: MA:0001942 +xref: NCIT:C32478 +xref: UMLS:C0226492 {source="ncithesaurus:Dorsalis_Pedis_Artery"} +is_a: UBERON:0003516 ! hindlimb blood vessel +is_a: UBERON:0004573 ! systemic artery +relationship: branching_part_of UBERON:0001537 ! anterior tibial artery +relationship: part_of UBERON:0001537 ! anterior tibial artery +relationship: supplies UBERON:0002387 ! pes + +[Term] +id: UBERON:0001540 +name: peroneal artery +def: "An artery that supplies blood to the lateral compartment of the leg and is typically a branch of posterior tibial artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/Peroneal_artery] +synonym: "arteria fibularis" EXACT LATIN [FMA:43921, FMA:TA] +synonym: "fibular artery" EXACT [] +xref: EMAPA:37674 {source="MA:th"} +xref: FMA:43921 +xref: http://linkedlifedata.com/resource/umls/id/C0226476 +xref: http://www.snomedbrowser.com/Codes/Details/181359009 +xref: MA:0002018 +xref: NCIT:C33314 +xref: OpenCyc:Mx4rwSO_s5wpEbGdrcN5Y29ycA +xref: Peroneal:artery +xref: UMLS:C0226476 {source="ncithesaurus:Peroneal_Artery"} +is_a: UBERON:0035292 ! branch of posterior tibial artery +relationship: supplies UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0001541 +name: medial plantar artery +def: "The medial plantar artery (internal plantar artery), much smaller than the lateral, passes forward along the medial side of the foot. It is at first situated above the Abductor hallucis, and then between it and the Flexor digitorum brevis, both of which it supplies. At the base of the first metatarsal bone, where it is much diminished in size, it passes along the medial border of the first toe, anastomosing with the first dorsal metatarsal artery. Small superficial digital branches accompany the digital branches of the medial plantar nerve and join the plantar metatarsal arteries of the first three spaces. [WP,unvetted]." [http://en.wikipedia.org/wiki/Medial_plantar_artery] +subset: uberon_slim +synonym: "a. plantaris medialis" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_plantar_artery] +xref: EMAPA:37101 {source="MA:th"} +xref: FMA:43925 +xref: http://en.wikipedia.org/wiki/Medial_plantar_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226479 +xref: http://linkedlifedata.com/resource/umls/id/C1512881 +xref: http://www.snomedbrowser.com/Codes/Details/181360004 +xref: MA:0001997 +xref: NCIT:C32860 +xref: NCIT:C52968 +xref: UMLS:C0226479 {source="ncithesaurus:Medial_Plantar_Artery"} +is_a: UBERON:0003516 ! hindlimb blood vessel +is_a: UBERON:0004573 ! systemic artery +relationship: part_of UBERON:0001538 {source="FMA"} ! posterior tibial artery + +[Term] +id: UBERON:0001542 +name: inguinal lymph node +def: "the lymph nodes located in the groin area" [MGI:cwg, MP:0002353] +subset: pheno_slim +subset: uberon_slim +xref: EMAPA:35431 +xref: FMA:44226 +xref: http://en.wikipedia.org/wiki/Inguinal_lymph_node +xref: http://linkedlifedata.com/resource/umls/id/C0729596 +xref: http://www.snomedbrowser.com/Codes/Details/181762005 +xref: MA:0000737 +xref: NCIT:C32801 +xref: UMLS:C0729596 {source="ncithesaurus:Inguinal_Lymph_Node"} +is_a: UBERON:0003968 {source="CL:tm"} ! peripheral lymph node +is_a: UBERON:0005173 ! abdominal segment element +intersection_of: UBERON:0000029 ! lymph node +intersection_of: part_of UBERON:0008337 ! inguinal part of abdomen +relationship: part_of UBERON:0008337 ! inguinal part of abdomen + +[Term] +id: UBERON:0001543 +name: popliteal lymph node +def: "the lymph nodes which drain the legs; contained in the popliteal fossa" [http://en.wikipedia.org/wiki/Popliteal_lymph_node, MGI:cwg, MP:0002352] +subset: pheno_slim +subset: uberon_slim +synonym: "popliteal glands" RELATED [http://en.wikipedia.org/wiki/Popliteal_lymph_nodes] +synonym: "popliteal lymph glands" RELATED [http://en.wikipedia.org/wiki/Popliteal_lymph_nodes] +synonym: "popliteal lymph node" RELATED [http://en.wikipedia.org/wiki/Popliteal_lymph_nodes] +xref: FMA:44227 +xref: http://en.wikipedia.org/wiki/Popliteal_lymph_node +xref: http://linkedlifedata.com/resource/umls/id/C0588057 +xref: http://www.snomedbrowser.com/Codes/Details/279156002 +xref: MA:0000738 +xref: NCIT:C53146 +xref: UMLS:C0588057 {source="ncithesaurus:Popliteal_Lymph_Node"} +is_a: UBERON:0003968 {source="CL:tm"} ! peripheral lymph node +is_a: UBERON:0016398 ! lymph node of lower limb +intersection_of: UBERON:0000029 ! lymph node +intersection_of: located_in UBERON:0016400 ! infrapatellar fat pad +intersection_of: part_of UBERON:0001485 ! knee joint +relationship: located_in UBERON:0016400 ! infrapatellar fat pad +relationship: part_of UBERON:0001485 ! knee joint + +[Term] +id: UBERON:0001544 +name: popliteal vein +def: "The popliteal vein course runs alongside the popliteal artery but carries the blood from the knee joint and muscles in the thigh and calf back to the heart. Its origin is defined by the junction of the posterior tibial vein and anterior tibial vein. It drains the peroneal vein before reaching the knee joint and turns into the femoral vein when leaving the adductor canal (also known as Hunter's canal). The popliteal artery extends from the femoral artery behind the popliteal fossa which is the space behind the knee. [WP,unvetted]." [http://en.wikipedia.org/wiki/Popliteal_vein] +subset: uberon_slim +synonym: "vena poplitea" RELATED LATIN [http://en.wikipedia.org/wiki/Popliteal_vein] +xref: EMAPA:37181 {source="MA:th"} +xref: FMA:44327 +xref: GAID:537 +xref: galen:PoplitealVein +xref: http://linkedlifedata.com/resource/umls/id/C0032652 +xref: http://www.snomedbrowser.com/Codes/Details/281065001 +xref: MA:0002197 +xref: MESH:D011152 +xref: NCIT:C33339 +xref: OpenCyc:Mx4rv8Ch-JwpEbGdrcN5Y29ycA +xref: Popliteal:vein +xref: UMLS:C0032652 {source="ncithesaurus:Popliteal_Vein"} +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003516 ! hindlimb blood vessel +relationship: part_of UBERON:0001361 ! femoral vein +relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein + +[Term] +id: UBERON:0001545 +name: anterior tibial vein +def: "A vein of the lower limb that carries blood from the anterior compartment of the leg to the popliteal vein which is forms when it joins with the posterior tibial vein. Like most deep veins, the anterior tibial vein is accompanied by an artery of the same name, the anterior tibial artery, along its course. [WP,unvetted]." [http://en.wikipedia.org/wiki/Anterior_tibial_vein] +subset: uberon_slim +synonym: "venae tibiales anteriores" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_tibial_vein] +xref: EMAPA:37135 {source="MA:th"} +xref: FMA:44331 +xref: galen:AnteriorTibialVein +xref: http://en.wikipedia.org/wiki/Anterior_tibial_vein +xref: http://linkedlifedata.com/resource/umls/id/C0226833 +xref: http://www.snomedbrowser.com/Codes/Details/281066000 +xref: MA:0002244 +xref: NCIT:C32115 +xref: OpenCyc:Mx4rvXYDl5wpEbGdrcN5Y29ycA +xref: UMLS:C0226833 {source="ncithesaurus:Anterior_Tibial_Vein"} +is_a: UBERON:0010370 {source="MA"} ! tibial vein +disjoint_from: UBERON:0001546 {source="lexical"} ! posterior tibial vein +relationship: part_of UBERON:0001544 ! popliteal vein +relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein +relationship: tributary_of UBERON:0001544 {source="FMA/obol"} ! popliteal vein + +[Term] +id: UBERON:0001546 +name: posterior tibial vein +def: "A vein of the lower limb carries blood from the posterior compartment and plantar surface of the foot to the popliteal vein which it forms when it joins with the anterior tibial vein. Like most deep veins, the posterior tibial vein is accompanied by an artery of the same name, the posterior tibial artery, along its course. [WP,unvetted]." [http://en.wikipedia.org/wiki/Posterior_tibial_vein] +subset: uberon_slim +synonym: "venae tibiales posteriores" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_tibial_vein] +xref: EMAPA:37183 {source="MA:th"} +xref: FMA:44332 +xref: galen:PosteriorTibialVein +xref: http://en.wikipedia.org/wiki/Posterior_tibial_vein +xref: http://linkedlifedata.com/resource/umls/id/C0226832 +xref: http://www.snomedbrowser.com/Codes/Details/281067009 +xref: MA:0002245 +xref: NCIT:C33386 +xref: OpenCyc:Mx4rwA9GD5wpEbGdrcN5Y29ycA +xref: UMLS:C0226832 {source="ncithesaurus:Posterior_Tibial_Vein"} +is_a: UBERON:0010370 {source="MA"} ! tibial vein +relationship: part_of UBERON:0001544 ! popliteal vein +relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein +relationship: tributary_of UBERON:0001544 {source="FMA/obol"} ! popliteal vein + +[Term] +id: UBERON:0001547 +name: small saphenous vein +def: "The small saphenous vein (also lesser saphenous vein), is a relatively large vein of the superficial posterior leg. [WP,unvetted]." [http://en.wikipedia.org/wiki/Small_saphenous_vein] +subset: uberon_slim +synonym: "lesser saphenous vein" EXACT [] +synonym: "short saphenous vein" EXACT [] +synonym: "vena saphena parva" EXACT LATIN [http://en.wikipedia.org/wiki/Small_saphenous_vein] +xref: BTO:0003272 +xref: EMAPA:37187 {source="MA:th"} +xref: FMA:44333 +xref: galen:LesserSaphenousVein +xref: http://en.wikipedia.org/wiki/Small_saphenous_vein +xref: http://linkedlifedata.com/resource/umls/id/C0226827 +xref: http://www.snomedbrowser.com/Codes/Details/181404009 +xref: MA:0002217 +xref: NCIT:C33546 +xref: UMLS:C0226827 {source="ncithesaurus:Short_Saphenous_Vein"} +is_a: UBERON:0007318 ! saphenous vein +relationship: part_of UBERON:0001544 ! popliteal vein +relationship: tributary_of UBERON:0001544 {source="FMA"} ! popliteal vein + +[Term] +id: UBERON:0001548 +name: lateral marginal vein +def: "a continuation of the Dorsal venous arch of the foot and is the origin of the short saphenous vein" [http://en.wikipedia.org/wiki/Lateral_marginal_vein] +synonym: "lateral marginal vein of foot" EXACT [] +synonym: "vena marginalis lateralis" EXACT [] +synonym: "vena marginalis lateralis pedis" EXACT LATIN [FMA:44359, FMA:TA] +xref: EMAPA:37161 {source="MA:th"} +xref: FMA:44359 +xref: http://en.wikipedia.org/wiki/Lateral_marginal_vein +xref: MA:0002160 +is_a: UBERON:0004261 ! lower leg blood vessel +is_a: UBERON:0035550 ! superficial vein +disjoint_from: UBERON:0001550 {source="lexical"} ! medial marginal vein +relationship: part_of UBERON:0001547 ! small saphenous vein +relationship: tributary_of UBERON:0001547 {source="FMA/obol"} ! small saphenous vein + +[Term] +id: UBERON:0001549 +name: dorsal metatarsal vein +def: "The dorsal metatarsal veins are veins which drain the metatarsus of the foot. [WP,unvetted]." [http://en.wikipedia.org/wiki/Dorsal_metatarsal_veins] +synonym: "metatarsal vein" EXACT [] +synonym: "venae metatarsales dorsales" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsal_metatarsal_veins] +xref: EMAPA:37143 {source="MA:th"} +xref: FMA:44377 +xref: http://en.wikipedia.org/wiki/Dorsal_metatarsal_veins +xref: http://linkedlifedata.com/resource/umls/id/C0835053 +xref: MA:0002105 +xref: NCIT:C52689 +xref: UMLS:C0835053 {source="ncithesaurus:Dorsal_Metatarsal_Vein"} +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0000983 ! metatarsus region +relationship: drains UBERON:0000983 ! metatarsus region +relationship: part_of UBERON:0008783 ! dorsal venous arch +relationship: tributary_of UBERON:0008783 ! dorsal venous arch + +[Term] +id: UBERON:0001550 +name: medial marginal vein +def: "a continuation of the Dorsal venous arch of the foot and is the origin of the long saphenous vein" [http://en.wikipedia.org/wiki/Medial_marginal_vein] +synonym: "medial marginal vein of foot" EXACT [] +synonym: "vena marginalis medialis" EXACT [] +synonym: "vena marginalis medialis pedis" EXACT LATIN [FMA:44420, FMA:TA] +xref: EMAPA:37170 {source="MA:th"} +xref: FMA:44420 +xref: http://en.wikipedia.org/wiki/Medial_marginal_vein +xref: MA:0002171 +is_a: UBERON:0004261 ! lower leg blood vessel +is_a: UBERON:0035550 ! superficial vein +relationship: part_of UBERON:0001363 ! great saphenous vein +relationship: tributary_of UBERON:0001363 {source="FMA/obol"} ! great saphenous vein + +[Term] +id: UBERON:0001551 +name: vein of hindlimb zeugopod +synonym: "sural vein" EXACT [FMA:44561] +xref: EMAPA:37231 {source="MA:th"} +xref: FMA:44561 +xref: MA:0002231 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0004261 ! lower leg blood vessel +relationship: drains UBERON:0001665 ! triceps surae +relationship: part_of UBERON:0001544 ! popliteal vein +relationship: tributary_of UBERON:0001544 {source="FMA"} ! popliteal vein + +[Term] +id: UBERON:0001552 +name: kidney arcuate artery +def: "One of the curved arteries at the corticomedullary border of the kidney that arise from the interlobar arteries and give rise to the interlobular arteries." [http://en.wikipedia.org/wiki/Arcuate_artery_of_the_foot, MP:0011315] +subset: pheno_slim +subset: uberon_slim +synonym: "arcuate artery" BROAD [MA:0002583] +synonym: "renal arcuate artery" EXACT [] +xref: EMAPA:28215 +xref: FMA:70497 +xref: http://en.wikipedia.org/wiki/Arcuate_arteries_of_the_kidney +xref: MA:0002583 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003644 ! kidney arterial blood vessel +relationship: branching_part_of UBERON:0009885 ! interlobar artery +relationship: part_of UBERON:0001225 {source="MA"} ! cortex of kidney +relationship: part_of UBERON:0009885 ! interlobar artery + +[Term] +id: UBERON:0001553 +name: medial tarsal artery +def: "The medial tarsal arteries are two or three small branches which ramify on the medial border of the foot and join the medial malleolar net-work." [http://en.wikipedia.org/wiki/Medial_tarsal_arteries] +xref: EMAPA:37102 {source="MA:th"} +xref: FMA:44598 +xref: http://en.wikipedia.org/wiki/Medial_tarsal_arteries +xref: http://linkedlifedata.com/resource/umls/id/C0226495 +xref: http://www.snomedbrowser.com/Codes/Details/67925000 +xref: MA:0001998 +xref: NCIT:C52969 +xref: UMLS:C0226495 {source="ncithesaurus:Medial_Tarsal_Artery"} +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003521 ! pes blood vessel + +[Term] +id: UBERON:0001554 +name: skin of hip +def: "A zone of skin that is part of a hip region." [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +synonym: "hip region zone of skin" EXACT [OBOL:automatic] +synonym: "hip skin" EXACT [] +synonym: "hip zone of skin" EXACT [OBOL:automatic] +synonym: "regio coxae zone of skin" EXACT [OBOL:automatic] +synonym: "zone of skin of hip" EXACT [OBOL:automatic] +synonym: "zone of skin of hip region" EXACT [OBOL:automatic] +synonym: "zone of skin of regio coxae" EXACT [OBOL:automatic] +xref: EMAPA:18148 +xref: FMA:45282 +xref: http://www.snomedbrowser.com/Codes/Details/181518004 +xref: MA:0000658 +is_a: UBERON:0000014 ! zone of skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0001464 ! hip +relationship: part_of UBERON:0001464 ! hip + +[Term] +id: UBERON:0001555 +name: digestive tract +def: "A tube extending from the mouth to the anus." [http://en.wikipedia.org/wiki/Talk\:Human_gastrointestinal_tract, https://github.com/geneontology/go-ontology/issues/7549] +subset: uberon_slim +subset: vertebrate_core +synonym: "alimentary canal" NARROW [] +synonym: "alimentary tract" NARROW [] +synonym: "digestive canal" RELATED [BTO:0000058] +synonym: "digestive tube" EXACT [] +synonym: "enteric tract" EXACT [ZFA:0000112] +synonym: "gut" BROAD [] +synonym: "gut tube" RELATED [] +xref: AAO:0010023 +xref: BILA:0000083 +xref: BTO:0000511 +xref: BTO:0000545 +xref: EHDAA2:0000726 +xref: EHDAA:518 +xref: EMAPA:16247 +xref: FBbt:00003125 +xref: FMA:45615 +xref: galen:AlimentaryTract +xref: http://linkedlifedata.com/resource/umls/id/C0017189 +xref: MA:0000917 +xref: NCIT:C34082 +xref: OpenCyc:Mx4rvVi0GpwpEbGdrcN5Y29ycA +xref: TAO:0000112 +xref: TGMA:0001819 +xref: UMLS:C0017189 {source="ncithesaurus:Gastrointestinal_Tract"} +xref: VHOG:0000309 +xref: WBbt:0005743 +xref: ZFA:0000112 +is_a: UBERON:0000025 ! tube +relationship: connects UBERON:0000165 ! mouth +relationship: develops_from UBERON:0007026 ! presumptive gut +relationship: immediate_transformation_of UBERON:0007026 {source="NCBIBook:NBK10107"} ! presumptive gut +relationship: part_of UBERON:0001007 ! digestive system + +[Term] +id: UBERON:0001556 +name: lower urinary tract +def: "Subdivision of urinary system which consists of the urinary bladder and the urethra." [FMA:45659] +subset: pheno_slim +subset: uberon_slim +xref: FMA:45659 +xref: galen:LowerUrinaryTract +xref: http://www.snomedbrowser.com/Codes/Details/181420004 +xref: MA:0002636 +is_a: UBERON:0000477 ! anatomical cluster +relationship: has_part UBERON:0000057 ! urethra +relationship: has_part UBERON:0001255 ! urinary bladder +relationship: part_of UBERON:0001008 ! renal system + +[Term] +id: UBERON:0001557 +name: upper respiratory tract +def: "The segment of the respiratory tract that starts proximally with the nose and ends distally with the cricoid cartilage, before continuing to the trachea." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +xref: EHDAA2:0002136 +xref: EMAPA:17669 +xref: FMA:45661 +xref: http://en.wikipedia.org/wiki/Upper_respiratory_tract +xref: http://www.snomedbrowser.com/Codes/Details/361381009 +xref: MA:0000442 +xref: OpenCyc:Mx4rtT2HwgJMEdyAAADggVbxzQ +xref: VHOG:0000406 +is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: has_part UBERON:0000004 ! nose + +[Term] +id: UBERON:0001558 +name: lower respiratory tract +def: "The segment of the respiratory tract that starts proximally with the trachea and includes all distal structures including the lungs[WP,modified]" [http://en.wikipedia.org/wiki/Lower_respiratory_tract, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "lower respiratory system" EXACT [] +xref: EHDAA2:0001036 +xref: EMAPA:16738 +xref: FMA:45662 +xref: http://en.wikipedia.org/wiki/Lower_respiratory_tract +xref: http://www.snomedbrowser.com/Codes/Details/281488008 +xref: MA:0000435 +xref: OpenCyc:Mx4rQRqjUgAKEdyHxgDggVfs8g +xref: VHOG:0000382 +is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract +relationship: has_part UBERON:0000170 ! pair of lungs + +[Term] +id: UBERON:0001559 +name: obsolete head of organ +comment: incorrect grouping +synonym: "head organ" EXACT [MA:0000581] +synonym: "organ head" EXACT [] +is_obsolete: true +consider: FMA:45729 +consider: MA:0000581 + +[Term] +id: UBERON:0001560 +name: neck of organ +subset: non_informative +synonym: "organ neck" EXACT [] +xref: FMA:45733 +is_a: UBERON:0034944 {source="FMA"} ! zone of organ + +[Term] +id: UBERON:0001561 +name: subcostal artery +def: "An artery that runs along the bottom of the lowest rib. They constitute the lowest pair of branches derived from the thoracic aorta, and are in series with the intercostal arteries. Each passes along the lower border of the twelfth rib behind the kidney and in front of the Quadratus lumborum muscle, and is accompanied by the twelfth thoracic nerve. It then pierces the posterior aponeurosis of the Transversus abdominis, and, passing forward between this muscle and the Obliquus internus, anastomoses with the superior epigastric, lower intercostal, and lumbar arteries. Each subcostal artery gives off a posterior branch which has a similar distribution to the posterior ramus of an intercostal artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/Subcostal_artery] +subset: uberon_slim +xref: EMAPA:19097 +xref: FMA:4613 +xref: http://linkedlifedata.com/resource/umls/id/C0226293 +xref: http://www.snomedbrowser.com/Codes/Details/244243008 +xref: MA:0002048 +xref: NCIT:C53000 +xref: Subcostal:artery +xref: UMLS:C0226293 {source="ncithesaurus:Subcostal_Artery"} +is_a: UBERON:0004573 ! systemic artery +relationship: posterior_to UBERON:0014478 ! rib skeletal system + +[Term] +id: UBERON:0001562 +name: digastric muscle group +def: "A group of muscles (or in some classifications, muscle bellies) that are located under the jaw and attach to the base of the cranium and typically attaches to the hyoid apparatus via a common tendon." [http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "digastric" EXACT [MA:0002288] +synonym: "digastric" RELATED [FMA:46291] +synonym: "digastric muscle" RELATED [http://en.wikipedia.org/wiki/Digastric_muscle] +synonym: "digastricus" RELATED [http://en.wikipedia.org/wiki/Digastric_muscle] +synonym: "musculus digastricus" EXACT LATIN [http://en.wikipedia.org/wiki/Digastric_muscle] +synonym: "musculus digastricus" RELATED [http://en.wikipedia.org/wiki/Digastric_muscle] +xref: Digastric:muscle +xref: EMAPA:25134 +xref: FMA:46291 +xref: http://linkedlifedata.com/resource/umls/id/C0224155 +xref: http://www.snomedbrowser.com/Codes/Details/244825002 +xref: MA:0002288 +xref: NCIT:C32462 +xref: UMLS:C0224155 {source="ncithesaurus:Digastric_Muscle"} +is_a: UBERON:0008571 {source="FMA"} ! suprahyoid muscle +relationship: has_muscle_insertion UBERON:0001685 {exception="Orangutan DOI:10.1007/BF02547558", notes="Intermediate tendon", source="dbpedia"} ! hyoid bone +relationship: innervated_by UBERON:0001647 {notes="anterior belly - mandibular division of the trigeminal via the mylohyoid nerve; posterior belly - facial nerve", source="dbpedia"} ! facial nerve + +[Term] +id: UBERON:0001563 +name: longus capitis muscle +def: "A muscle that arises by four tendinous slips from the transverse processes of the third, fourth, fifth, and sixth cervical vertebrae and inserts into the inferior surface of the basilar part of the occipital bone.[WP,modified]." [http://en.wikipedia.org/wiki/Longus_capitis_muscle] +subset: uberon_slim +synonym: "longus capitis" EXACT [MA:0002340] +synonym: "longus capitus muscle" RELATED [http://en.wikipedia.org/wiki/Longus_capitis_muscle] +synonym: "m. rectus capitis posterior" EXACT [AAO:0010666] +synonym: "musculus longus capitis" RELATED LATIN [http://en.wikipedia.org/wiki/Longus_capitis_muscle] +synonym: "rectus capitis anticus major" RELATED [http://en.wikipedia.org/wiki/Longus_capitis_muscle] +xref: AAO:0010666 +xref: EMAPA:25131 +xref: FMA:46308 +xref: http://en.wikipedia.org/wiki/Longus_capitis_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224107 +xref: http://www.snomedbrowser.com/Codes/Details/244837000 +xref: MA:0002340 +xref: NCIT:C52956 +xref: UMLS:C0224107 {source="ncithesaurus:Longus_Capitis"} +is_a: UBERON:0008549 {source="FMA-abduced"} ! prevertebral muscle +relationship: has_muscle_insertion UBERON:0001692 {notes="basilar part of the occipital bone", source="dbpedia"} ! basioccipital bone +relationship: has_muscle_origin UBERON:0001077 {notes="anterior tubercles of the transverse processes of the third fourth fifth and sixth cervical vertebrae", source="dbpedia"} ! transverse process of vertebra +relationship: innervated_by UBERON:0000962 ! nerve of cervical vertebra + +[Term] +id: UBERON:0001564 +name: mylohyoid muscle +def: "The mylohyoid is a pharyngeal arch I muscle that participates in oral/pharyngeal behaviors and is innervated by the nerve to mylohyoid and attaches to the midline raphe linking right and left mylohyoid and the mandible." [MFMO:0000084] +comment: Taxon motes: mylohyoideus and digastricus anterior of rats derived from intermandibularis posterior, see e.g. Jarvik [53] http://www.biomedcentral.com/1471-213X/8/24/table/T3 +subset: uberon_slim +synonym: "musculus mylohyoideus" EXACT [http://en.wikipedia.org/wiki/Mylohyoid_muscle] +synonym: "musculus mylohyoideus" RELATED LATIN [http://en.wikipedia.org/wiki/Mylohyoid_muscle] +synonym: "mylohyoid" EXACT [http://en.wikipedia.org/wiki/Mylohyoid_muscle] +synonym: "mylohyoideus" EXACT [http://en.wikipedia.org/wiki/Mylohyoid_muscle] +synonym: "mylohyoideus muscle" EXACT [http://en.wikipedia.org/wiki/Mylohyoid_muscle] +xref: EMAPA:25136 +xref: FMA:46320 +xref: http://linkedlifedata.com/resource/umls/id/C0224159 +xref: http://www.snomedbrowser.com/Codes/Details/244827005 +xref: MA:0002344 +xref: MFMO:0000084 +xref: Mylohyoid:muscle +xref: NCIT:C52962 +xref: UMLS:C0224159 {source="ncithesaurus:Mylohyoid"} +is_a: UBERON:0008571 {source="FMA"} ! suprahyoid muscle +is_a: UBERON:0018544 ! trigeminal nerve muscle +relationship: has_muscle_insertion UBERON:0003999 {notes="body of hyoid bone and median raphe", source="dbpedia"} ! hyoid bone body +relationship: innervated_by UBERON:0000375 {notes="mylohyoid nerve from inferior alveolar branch of mandibular nerve V3", source="dbpedia"} ! mandibular nerve + +[Term] +id: UBERON:0001565 +name: geniohyoid muscle +def: "The geniohyoid is a muscle that attaches to the mandible and the hyoid apparatus and is innervated by the first cervical nerve (C1)." [MFMO:0000068] +subset: uberon_slim +synonym: "genio-hyoideus" EXACT [] +synonym: "genio-hyoideus muscle" EXACT [] +synonym: "geniohyoid" EXACT [http://en.wikipedia.org/wiki/Geniohyoid_muscle] +synonym: "geniohyoideus" EXACT [http://en.wikipedia.org/wiki/Geniohyoid_muscle] +synonym: "geniohyoideus muscle" EXACT [http://en.wikipedia.org/wiki/Geniohyoid_muscle] +synonym: "m. geniohyoideus" EXACT [] +synonym: "musculus geniohyoideus" RELATED LATIN [http://en.wikipedia.org/wiki/Geniohyoid_muscle] +xref: EMAPA:36626 +xref: FMA:46325 +xref: Geniohyoid:muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224160 +xref: http://www.snomedbrowser.com/Codes/Details/244828000 +xref: MA:0002308 +xref: NCIT:C52930 +xref: UMLS:C0224160 {source="ncithesaurus:Geniohyoid"} +is_a: UBERON:0008571 {source="FMA"} ! suprahyoid muscle +is_a: UBERON:0011151 ! jaw depressor muscle +relationship: has_muscle_insertion UBERON:0001685 {source="dbpedia"} ! hyoid bone +relationship: has_muscle_origin UBERON:0006606 {source="dbpedia"} ! mandibular symphysis +relationship: innervated_by UBERON:0001650 {notes="C1 via the hypoglossal nerve", source="dbpedia"} ! hypoglossal nerve +relationship: innervated_by UBERON:0001780 {notes="C1 via the hypoglossal nerve", source="dbpedia"} ! spinal nerve + +[Term] +id: UBERON:0001566 +name: cricothyroid muscle +def: "Intrinsic muscle of the larynx, innervated by the external division of the laryngeal nerve, a branch of the vagus nerve. It attaches to the anterolateral surface of the cricoid cartilage and the external surface of the thyroid cartilage." [MFMO:0000324] +subset: uberon_slim +synonym: "cricothyroid" EXACT [] +synonym: "cricothyroideus" EXACT [] +synonym: "M. cricothyroideus" EXACT LATIN [http://en.wikipedia.org/wiki/Cricothyroid_muscle] +synonym: "musculus cricothyroideus" EXACT LATIN [FMA:46417, FMA:TA] +xref: Cricothyroid:muscle +xref: EMAPA:19270 +xref: FMA:46417 +xref: http://linkedlifedata.com/resource/umls/id/C0224178 +xref: http://www.snomedbrowser.com/Codes/Details/244809007 +xref: MA:0002284 +xref: MFMO:0000324 +xref: NCIT:C32404 +xref: UMLS:C0224178 {source="ncithesaurus:Cricothyroid_Muscle"} +is_a: UBERON:0006328 ! laryngeal intrinsic muscle +intersection_of: UBERON:0001630 ! muscle organ +intersection_of: attaches_to UBERON:0001738 ! thyroid cartilage +intersection_of: attaches_to UBERON:0002375 ! cricoid cartilage +intersection_of: innervated_by UBERON:0001759 ! vagus nerve +relationship: attaches_to UBERON:0001738 ! thyroid cartilage +relationship: attaches_to UBERON:0002375 ! cricoid cartilage +relationship: has_muscle_insertion UBERON:0001738 {notes="Inferior cornu and lamina of the thyroid cartilage", source="dbpedia"} ! thyroid cartilage +relationship: has_muscle_origin UBERON:0002375 {notes="Anterior and lateral cricoid cartilage", source="dbpedia"} ! cricoid cartilage +relationship: innervated_by UBERON:0001759 {notes="external laryngeal branch of the vagus", source="dbpedia"} ! vagus nerve + +[Term] +id: UBERON:0001567 +name: cheek +def: "A fleshy subdivision of one side of the face bounded by an eye, ear and the nose." [http://en.wikipedia.org/wiki/Cheek, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "buccae" RELATED LATIN [http://en.wikipedia.org/wiki/Cheek] +synonym: "jowl" RELATED [http://en.wikipedia.org/wiki/Cheek] +xref: BTO:0001754 +xref: EMAPA:37451 {source="MA:th"} +xref: FMA:46476 +xref: GAID:65 +xref: galen:Cheek +xref: http://en.wikipedia.org/wiki/Cheek +xref: http://linkedlifedata.com/resource/umls/id/C0007966 +xref: http://www.snomedbrowser.com/Codes/Details/182325008 +xref: MA:0002475 +xref: MESH:D002610 +xref: NCIT:C13070 +xref: OpenCyc:Mx4rvVi5WZwpEbGdrcN5Y29ycA +xref: TAO:0002113 +xref: UMLS:C0007966 {source="ncithesaurus:Cheek"} +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:0034929 ! external soft tissue zone +relationship: in_lateral_side_of UBERON:0001456 {source="FMA-abduced-lr"} ! face +relationship: part_of UBERON:0004089 ! midface + +[Term] +id: UBERON:0001568 +name: muscle of larynx +def: "The muscles associated with the larynx." [MP:0002263] +subset: pheno_slim +synonym: "laryngeal muscle" EXACT [] +synonym: "larynx muscle" EXACT [] +synonym: "larynx muscle organ" EXACT [OBOL:automatic] +synonym: "muscle organ of larynx" EXACT [OBOL:automatic] +synonym: "musculi laryngeales" EXACT [] +xref: BTO:0001626 +xref: EMAPA:35473 +xref: FMA:46562 +xref: GAID:144 +xref: http://en.wikipedia.org/wiki/Muscles_of_larynx +xref: http://linkedlifedata.com/resource/umls/id/C0023054 +xref: http://www.snomedbrowser.com/Codes/Details/181744001 +xref: MA:0001768 +xref: MESH:D007821 +xref: NCIT:C32934 +xref: UMLS:C0023054 {source="ncithesaurus:Laryngeal_Muscle"} +is_a: UBERON:0002377 ! muscle of neck +is_a: UBERON:0003831 ! respiratory system muscle +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0001737 ! larynx +relationship: contributes_to_morphology_of UBERON:0001015 ! musculature +relationship: contributes_to_morphology_of UBERON:0001737 ! larynx +relationship: part_of UBERON:0004478 {source="prolog"} ! musculature of larynx + +[Term] +id: UBERON:0001569 +name: constrictor muscle of pharynx +def: "Pharyngeal constrictor refers to one of the muscles that serves to constrict the pharynx. They include: Superior pharyngeal constrictor muscle Middle pharyngeal constrictor muscle Inferior pharyngeal constrictor muscle" [http://en.wikipedia.org/wiki/Pharyngeal_constrictor] +subset: uberon_slim +synonym: "pharyngeal constrictor muscle" EXACT [] +xref: EMAPA:18964 +xref: FMA:46620 +xref: http://www.snomedbrowser.com/Codes/Details/244799007 +xref: MA:0002278 +xref: Pharyngeal:constrictor +is_a: UBERON:0000933 ! pharyngeal muscle + +[Term] +id: UBERON:0001570 +name: inferior pharyngeal constrictor +def: "The inferior pharyngeal constrictor, the thickest of the three constrictors, arises from the sides of the cricoid and thyroid cartilage. Similarly to the superior and middle pharyngeal constrictor muscles, it is innervated by the vagus nerve (cranial nerve X), specifically, by branches from the pharyngeal plexus and by neuronal branches from the recurrent laryngeal nerve. [WP,unvetted]." [http://en.wikipedia.org/wiki/Inferior_pharyngeal_constrictor_muscle] +subset: uberon_slim +synonym: "constrictor inferior" RELATED [http://en.wikipedia.org/wiki/Inferior_pharyngeal_constrictor_muscle] +synonym: "constrictor muscle of pharynx inferior" EXACT [MA:0002279] +synonym: "constrictor pharyngis inferior" RELATED [http://en.wikipedia.org/wiki/Inferior_pharyngeal_constrictor_muscle] +synonym: "constrictores pharyngis caudales" EXACT [] +synonym: "inferior constrictor" EXACT [FMA:46623] +synonym: "inferior constrictor" RELATED [http://en.wikipedia.org/wiki/Inferior_pharyngeal_constrictor_muscle] +synonym: "inferior constrictor muscle" RELATED [http://en.wikipedia.org/wiki/Inferior_pharyngeal_constrictor_muscle] +synonym: "inferior constrictor of pharynx" EXACT [FMA:46623] +synonym: "inferior constrictor pharyngeus" EXACT [FMA:46623] +synonym: "inferior pharyngeal constrictor" RELATED [http://en.wikipedia.org/wiki/Inferior_pharyngeal_constrictor_muscle] +synonym: "musculus constrictor pharyngis inferior" EXACT LATIN [FMA:46623, FMA:TA] +synonym: "musculus constrictor pharyngis inferior" EXACT LATIN [FMA:TA] +synonym: "musculus constrictor pharyngis inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_pharyngeal_constrictor_muscle] +xref: EMAPA:18965 +xref: FMA:46623 +xref: http://en.wikipedia.org/wiki/Inferior_pharyngeal_constrictor_muscle +xref: http://www.snomedbrowser.com/Codes/Details/244803008 +xref: MA:0002279 +is_a: UBERON:0001566 ! cricothyroid muscle +is_a: UBERON:0001569 ! constrictor muscle of pharynx +relationship: has_muscle_insertion UBERON:0011345 {source="Wikipedia"} ! pharyngeal raphe +relationship: has_muscle_origin UBERON:0001738 {notes="cricoid and thyroid cartilage", source="dbpedia"} ! thyroid cartilage + +[Term] +id: UBERON:0001571 +name: genioglossus muscle +def: "Either of a pair of lingual muscles with origin in the mandible, with insertion to the lingual fascia below the mucous membrane and epiglottis, with nerve supply from the hypoglossal nerve, and whose action depresses and protrudes the tongue." [http://en.wikipedia.org/wiki/Genioglossus_muscle, VHOG:0000847] +subset: uberon_slim +synonym: "genioglossus" EXACT [] +synonym: "m. genioglossus" EXACT [] +synonym: "musculus genioglossus" EXACT [] +xref: AAO:0010660 +xref: EHDAA2:0000704 +xref: EHDAA:9150 +xref: EMAPA:18276 +xref: FMA:46690 +xref: Genioglossus:muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224194 +xref: http://www.snomedbrowser.com/Codes/Details/244784007 +xref: MA:0002307 +xref: NCIT:C52928 +xref: UMLS:C0224194 {source="ncithesaurus:Genioglossus"} +xref: VHOG:0000847 +is_a: UBERON:0001575 {source="FMA"} ! extrinsic muscle of tongue +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: develops_from UBERON:0010059 {source="EHDAA2"} ! hypoglossal cord +relationship: has_muscle_insertion UBERON:0009471 {source="Wikipedia"} ! dorsum of tongue +relationship: has_muscle_origin UBERON:0006606 ! mandibular symphysis + +[Term] +id: UBERON:0001572 +name: hyoglossus muscle +def: "A muscle that attaches to the hyopid bone and to the tongue and is innervated by cranial nerve XII" [FEED:rd] +subset: uberon_slim +synonym: "hyoglossus" EXACT [http://en.wikipedia.org/wiki/Hyoglossus] +synonym: "m. hyoglossus" EXACT [] +xref: AAO:0010663 +xref: EMAPA:18277 +xref: FMA:46691 +xref: http://linkedlifedata.com/resource/umls/id/C0224196 +xref: http://www.snomedbrowser.com/Codes/Details/244785008 +xref: Hyoglossus:muscle +xref: MA:0002317 +xref: MFMO_0000064 +xref: NCIT:C53161 +xref: UMLS:C0224196 {source="ncithesaurus:Hyoglossus_Muscle"} +is_a: UBERON:0001575 {source="FMA"} ! extrinsic muscle of tongue +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: attaches_to UBERON:0001685 ! hyoid bone +intersection_of: attaches_to UBERON:0001723 ! tongue +intersection_of: innervated_by UBERON:0001650 ! hypoglossal nerve +relationship: attaches_to UBERON:0001685 ! hyoid bone +relationship: attaches_to UBERON:0001723 ! tongue +relationship: has_muscle_insertion UBERON:0001723 ! tongue +relationship: has_muscle_origin UBERON:0001685 {notes="lingual process in horse", source="dbpedia"} ! hyoid bone + +[Term] +id: UBERON:0001573 +name: styloglossus +def: "The Styloglossus, the shortest and smallest of the three styloid muscles, arises from the anterior and lateral surfaces of the styloid process, near its apex, and from the stylomandibular ligament. Passing downward and forward between the internal and external carotid arteries, it divides upon the side of the tongue near its dorsal surface, blending with the fibers of the Longitudinalis inferior in front of the Hyoglossus; the other, oblique, overlaps the Hyoglossus and decussates with its fibers. [WP,unvetted]." [http://en.wikipedia.org/wiki/Styloglossus] +subset: uberon_slim +synonym: "musculus styloglossus" RELATED LATIN [http://en.wikipedia.org/wiki/Styloglossus] +synonym: "syloglossus muscle" EXACT [] +xref: EMAPA:18279 +xref: FMA:46692 +xref: http://en.wikipedia.org/wiki/Styloglossus +xref: http://linkedlifedata.com/resource/umls/id/C0224195 +xref: MA:0002387 +xref: NCIT:C53071 +xref: UMLS:C0224195 {source="ncithesaurus:Styloglossus"} +is_a: UBERON:0001575 {source="FMA"} ! extrinsic muscle of tongue +relationship: has_muscle_insertion UBERON:0001723 {notes="tip and sides of tongue", source="dbpedia"} ! tongue +relationship: has_muscle_origin UBERON:0003960 {source="dbpedia"} ! styloid process of temporal bone + +[Term] +id: UBERON:0001574 +name: palatoglossus muscle +def: "The palatoglossus, glossopalatinus, or palatoglossal muscle is a small fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the glossopalatine arch. It arises from the anterior surface of the soft palate, where it is continuous with the muscle of the opposite side, and passing downward, forward, and lateralward in front of the palatine tonsil, is inserted into the side of the tongue, some of its fibers spreading over the dorsum, and others passing deeply into the substance of the organ to intermingle with the Transversus linguæ. [WP,unvetted]." [http://en.wikipedia.org/wiki/Palatoglossus_muscle] +subset: uberon_slim +synonym: "musculus palatoglossus" RELATED LATIN [http://en.wikipedia.org/wiki/Palatoglossus_muscle] +synonym: "palatoglossal" EXACT [] +synonym: "palatoglossal muscle" EXACT [] +synonym: "palatoglossus" EXACT [] +xref: EMAPA:18278 +xref: FMA:46697 +xref: http://linkedlifedata.com/resource/umls/id/C1704249 +xref: http://www.snomedbrowser.com/Codes/Details/244783001 +xref: MA:0002351 +xref: NCIT:C53170 +xref: Palatoglossus:muscle +xref: UMLS:C1704249 {source="ncithesaurus:Palatoglossus_Muscle"} +is_a: UBERON:0000378 ! tongue muscle +is_a: UBERON:0003682 ! palatal muscle +relationship: has_muscle_insertion UBERON:0001723 {source="dbpedia"} ! tongue +relationship: has_muscle_origin UBERON:0003216 {notes="aponeurosis", source="dbpedia"} ! hard palate +relationship: innervated_by UBERON:0000929 {source="Wikipedia"} ! pharyngeal branch of vagus nerve + +[Term] +id: UBERON:0001575 +name: extrinsic muscle of tongue +def: "A muscle organ that attaches the tongue to some other structure." [http://en.wikipedia.org/wiki/Muscles_of_tongue, https://github.com/obophenotype/uberon/issues/331] +synonym: "extrinsic lingual muscle" EXACT [] +synonym: "extrinsic tongue muscle" EXACT [] +xref: EHDAA2:0002063 +xref: EHDAA:9148 +xref: EMAPA:18275 +xref: FMA:46699 +xref: http://www.snomedbrowser.com/Codes/Details/244782006 +xref: MA:0002296 +xref: VHOG:0000825 +is_a: UBERON:0000378 {is_inferred="true"} ! tongue muscle +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: attaches_to UBERON:0004765 ! skeletal element +intersection_of: attaches_to_part_of UBERON:0001723 ! tongue +intersection_of: innervated_by UBERON:0001650 ! hypoglossal nerve +relationship: attaches_to UBERON:0004765 ! skeletal element +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/dosumis +property_value: dc-contributor https://github.com/mellybelly +property_value: dc-contributor https://github.com/RDruzinsky +relationship: develops_from UBERON:0011332 ! extrinsic tongue pre-muscle mass +relationship: immediate_transformation_of UBERON:0011332 ! extrinsic tongue pre-muscle mass +relationship: innervated_by UBERON:0001650 {notes="check palatoglossus", source="Wikipedia"} ! hypoglossal nerve + +[Term] +id: UBERON:0001576 +name: intrinsic muscle of tongue +def: "The intrinsic tongue muscles are an integral part of the tongue and completely contained within the tongue that are innervated by Cranial Nerve XII." [http://www.feedexp.org/wiki/Mammalian_Muscle_Ontology_Workshop] +synonym: "intrinsic lingual muscle" EXACT [] +synonym: "intrinsic tongue muscle" EXACT [] +xref: EHDAA2:0002064 +xref: EHDAA:9152 +xref: EMAPA:18280 +xref: FMA:46701 +xref: http://www.snomedbrowser.com/Codes/Details/244788005 +xref: MA:0002327 +xref: VHOG:0000748 +is_a: UBERON:0000378 {is_inferred="true"} ! tongue muscle +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: attaches_to_part_of UBERON:0001723 ! tongue +intersection_of: innervated_by UBERON:0001650 ! hypoglossal nerve +intersection_of: part_of UBERON:0001723 ! tongue +relationship: develops_from UBERON:0010059 {source="EHDAA2"} ! hypoglossal cord +relationship: innervated_by UBERON:0001650 {source="FEED", source="Wikipedia"} ! hypoglossal nerve +relationship: part_of UBERON:0001723 ! tongue + +[Term] +id: UBERON:0001577 +name: facial muscle +def: "A muscle innervated by a facial nerve." [FEED:rd] +subset: pheno_slim +subset: uberon_slim +synonym: "cranial-facial muscle" RELATED [EMAPA:25133] +synonym: "cranio-facial muscle" RELATED [EMAPA:25133] +synonym: "craniofacial muscle" RELATED [EMAPA:25133] +synonym: "face muscle" EXACT [FMA:46751] +synonym: "face muscle organ" EXACT [OBOL:automatic] +synonym: "facial muscle" EXACT [FMA:46751] +synonym: "facial muscle" EXACT [XAO:0001013] +synonym: "facial muscle proper" EXACT [] +synonym: "facial nerve innervated muscle" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "facial nerve muscle" EXACT [] +synonym: "mimetic muscles" RELATED [http://en.wikipedia.org/wiki/Facial_muscles] +synonym: "muscle of face" EXACT [FMA:46751] +synonym: "muscle of facil expression" RELATED [http://en.wikipedia.org/wiki/Facial_muscles] +synonym: "muscle organ of face" EXACT [OBOL:automatic] +synonym: "muscles of facial expression" RELATED [http://en.wikipedia.org/wiki/Facial_muscles] +synonym: "musculi faciei" RELATED LATIN [http://en.wikipedia.org/wiki/Facial_muscles] +xref: Facial:muscles +xref: FMA:46751 +xref: GAID:143 +xref: http://linkedlifedata.com/resource/umls/id/C0015460 +xref: http://www.snomedbrowser.com/Codes/Details/25903009 +xref: MA:0003160 +xref: MESH:D005152 +xref: MFMO:0000005 +xref: NCIT:C13073 +xref: UMLS:C0015460 {source="ncithesaurus:Facial_Muscle"} +xref: XAO:0001013 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015789 ! cranial or facial muscle +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: innervated_by UBERON:0001647 ! facial nerve +disjoint_from: UBERON:0003681 ! masticatory muscle +relationship: develops_from UBERON:0003066 {source="FEED", source="Wikipedia"} ! pharyngeal arch 2 +relationship: innervated_by UBERON:0001647 ! facial nerve + +[Term] +id: UBERON:0001578 +name: orbicularis oculi muscle +def: "A circumorbital muscle in the face that closes the eyelid[HP]." [http://en.wikipedia.org/wiki/Orbicularis_oculi_muscle] +comment: It arises from the nasal part of the frontal bone, from the frontal process of the maxilla in front of the lacrimal groove, and from the anterior surface and borders of a short fibrous band, the medial palpebral ligament. From this origin, the fibers are directed lateralward, forming a broad and thin layer, which occupies the eyelids or palpebræ, surrounds the circumference of the orbit, and spreads over the temple, and downward on the cheek. The palpebral portion of the muscle is thin and pale; it arises from the bifurcation of the medial palpebral ligament, forms a series of concentric curves, and is inserted into the lateral palpebral raphé. The orbital portion is thicker and of a reddish color; its fibers form a complete ellipse without interruption at the lateral palpebral commissure; the upper fibers of this portion blend with the Frontalis and Corrugator. The lacrimal part (Tensor tarsi) is a small, thin muscle, about 6 mm. in breadth and 12 mm. in length, situated behind the medial palpebral ligament and lacrimal sac. It arises from the posterior crest and adjacent part of the orbital surface of the lacrimal bone, and passing behind the lacrimal sac, divides into two slips, upper and lower, which are inserted into the superior and inferior tarsi medial to the puncta lacrimalia; occasionally it is very indistinct. [WP,unvetted]. [Wikipedia:Orbicularis_oculi_muscle] +subset: pheno_slim +subset: uberon_slim +synonym: "musculus orbicularis oculi" RELATED LATIN [http://en.wikipedia.org/wiki/Orbicularis_oculi_muscle] +synonym: "orbicularis oculi" EXACT [http://en.wikipedia.org/wiki/Orbicularis_oculi_muscle] +synonym: "tensor tarsi" RELATED [http://en.wikipedia.org/wiki/Orbicularis_oculi_muscle] +xref: EMAPA:35619 +xref: FMA:46779 +xref: http://en.wikipedia.org/wiki/Orbicularis_oculi_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224122 +xref: http://www.snomedbrowser.com/Codes/Details/244726006 +xref: MA:0001254 +xref: NCIT:C52886 +xref: UMLS:C0224122 {source="ncithesaurus:Orbicularis_Oculi"} +is_a: UBERON:0003660 {source="MA"} ! eyelid muscle +is_a: UBERON:0004277 ! eye muscle +disjoint_from: UBERON:0013497 ! muscularis orbicularis +relationship: has_muscle_insertion UBERON:0004772 ! eyelid tarsus +relationship: has_muscle_origin UBERON:0000209 {source="dbpedia"} ! tetrapod frontal bone +relationship: has_muscle_origin UBERON:0001680 {source="dbpedia"} ! lacrimal bone +relationship: has_muscle_origin UBERON:0004724 {source="dbpedia"} ! medial palpebral ligament +relationship: innervated_by UBERON:0001647 {notes="branches of the facial nerve and Zygomatic branches of Facial Nerve", source="dbpedia"} ! facial nerve + +[Term] +id: UBERON:0001579 +name: olfactory nerve +def: "Nerve that carries information from the olfactory epithelium to the olfactory bulb[Butler and Hodos]." [http://en.wikipedia.org/wiki/Olfactory_nerve, ISBN:0471209627] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "1n" BROAD ABBREVIATION [BIRNLEX:1319, NIFSTD:NeuroNames_abbrevSource] +synonym: "CN-I" RELATED [] +synonym: "cranial nerve I" RELATED [] +synonym: "fila olfactoria" RELATED [BTO:0003648] +synonym: "first cranial nerve" EXACT [] +synonym: "nerve I" RELATED [NeuroNames:32] +synonym: "nerve of smell" RELATED [BTO:0003648] +synonym: "nervus olfactorius" RELATED [BTO:0003648] +synonym: "nervus olfactorius" RELATED LATIN [http://en.wikipedia.org/wiki/Olfactory_nerve] +synonym: "nervus olfactorius [i]" EXACT LATIN [FMA:46787, FMA:TA] +synonym: "olfactoria fila" RELATED [NeuroNames:32] +synonym: "olfactory fila" RELATED [BTO:0003648] +synonym: "olfactory I" EXACT [EHDAA2:0001293] +synonym: "olfactory i nerve" EXACT [] +synonym: "olfactory nerve [I]" EXACT [] +xref: AAO:0010088 +xref: BAMS:1n +xref: BAMS:ln +xref: BIRNLEX:1319 +xref: BTO:0003648 +xref: EHDAA2:0001293 +xref: EHDAA:6672 +xref: EMAPA:17797 +xref: FMA:46787 +xref: GAID:830 +xref: HBA:9300 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=32 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=32 {source="BIRNLEX:1319"} +xref: http://linkedlifedata.com/resource/umls/id/C0028938 +xref: http://linkedlifedata.com/resource/umls/id/C1268984 +xref: http://www.snomedbrowser.com/Codes/Details/180937006 +xref: MA:0001096 +xref: MBA:840 +xref: MESH:D009832 +xref: NCIT:C12759 +xref: Olfactory:nerve +xref: OpenCyc:Mx4rvZuXAJwpEbGdrcN5Y29ycA +xref: TAO:0000249 +xref: UMLS:C0028938 {source="BIRNLEX:1319"} +xref: UMLS:C0028938 {source="ncithesaurus:Olfactory_Nerve"} +xref: UMLS:C1268984 {source="BIRNLEX:1319"} +xref: VHOG:0000703 +xref: XAO:0000426 +xref: ZFA:0000249 +is_a: UBERON:0001785 ! cranial nerve +intersection_of: UBERON:0001785 ! cranial nerve +intersection_of: extends_fibers_into UBERON:0002264 ! olfactory bulb +intersection_of: innervates UBERON:0001997 ! olfactory epithelium +relationship: develops_from UBERON:0003050 {source="ISBN:0471888893"} ! olfactory placode +relationship: extends_fibers_into UBERON:0002264 ! olfactory bulb +relationship: innervates UBERON:0001997 {source="ISBN:0471888893"} ! olfactory epithelium + +[Term] +id: UBERON:0001580 +name: levator labii superioris +def: "The levator labii superioris (or quadratus labii superioris) is a broad sheet, the origin of which extends from the side of the nose to the zygomatic bone. Its medial fibers form the angular head, which arises by a pointed extremity from the upper part of the frontal process of the maxilla and passing obliquely downward and lateralward divides into two slips. One of these is inserted into the greater alar cartilage and skin of the nose; the other is prolonged into the lateral part of the upper lip, blending with the infraorbital head and with the Orbicularis oris. The intermediate portion or infraorbital head arises from the lower margin of the orbit immediately above the infraorbital foramen, some of its fibers being attached to the maxilla, others to the zygomatic bone. Its fibers converge, to be inserted into the muscular substance of the upper lip between the angular head and the Caninus. The lateral fibers, forming the zygomatic head, arise from the malar surface of the zygomatic bone immediately behind the zygomaticomaxillary suture and pass downward and medialward to the upper lip. [WP,unvetted]." [http://en.wikipedia.org/wiki/Levator_labii_superioris] +subset: uberon_slim +synonym: "musculus levator labii superioris" RELATED LATIN [http://en.wikipedia.org/wiki/Levator_labii_superioris] +xref: EMAPA:37503 {source="MA:th"} +xref: FMA:46805 +xref: http://en.wikipedia.org/wiki/Levator_labii_superioris +xref: http://linkedlifedata.com/resource/umls/id/C1704248 +xref: MA:0002333 +xref: MFMO:0000136 +xref: NCIT:C53164 +xref: UMLS:C1704248 {source="ncithesaurus:Levator_Labii_Superioris"} +is_a: UBERON:0001577 {source="FEED"} ! facial muscle +relationship: has_muscle_insertion UBERON:0001458 {notes="Skin and muscle of the upper lip", source="dbpedia"} ! skin of lip +relationship: has_muscle_insertion UBERON:0001834 {notes="Skin and muscle of the upper lip", source="dbpedia"} ! upper lip + +[Term] +id: UBERON:0001581 +name: depressor labii inferioris +def: "A muscle of facial expression, innervated by the facial nerve, attached to the skin of the lower lip, orbicularis oris muscle, and mandible, and superficial and lateral to the mentalis muscle. See Diogo et al., 2009; Burrows et al., 2011)" [MFMO:0000123] +subset: uberon_slim +xref: EMAPA:37516 {source="MA:th"} +xref: FMA:46816 +xref: http://en.wikipedia.org/wiki/Depressor_labii_inferioris_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224119 +xref: MA:0002287 +xref: MFMO:0000123 +xref: NCIT:C53152 +xref: UMLS:C0224119 {source="ncithesaurus:Depressor_Labii_Inferioris"} +is_a: UBERON:0001577 {is_inferred="true"} ! facial muscle +is_a: UBERON:0013765 ! digestive system element +is_a: UBERON:0015212 ! lateral structure +relationship: has_muscle_insertion UBERON:0001835 {notes="integument of the lower lip Orbicularis oris fibers its fellow of the opposite side", source="dbpedia"} ! lower lip +relationship: has_muscle_insertion UBERON:0010933 {notes="integument of the lower lip Orbicularis oris fibers its fellow of the opposite side", source="dbpedia"} ! orbicularis oris muscle +relationship: has_muscle_origin UBERON:0001684 {notes="oblique line of the mandible between the symphysis and the mental foramen", source="dbpedia"} ! mandible +relationship: in_lateral_side_of UBERON:0008199 {source="FMA-abduced-lr"} ! chin +relationship: part_of UBERON:0008199 ! chin + +[Term] +id: UBERON:0001582 +name: buccinator muscle +def: "The buccinator is a muscle that is attached to the mandible, skin, pterygomandibular raphe and maxilla, and is innervated by Cranial Nerve VII and participates in oropharyngeal behavior." [FEED:cw, FEED:rd, http://www.feedexp.org/, MFMO:0000002] +subset: uberon_slim +synonym: "buccinator" EXACT [] +synonym: "buccinatorius" RELATED [MFMO:0000002] +synonym: "musculus buccinator" EXACT [] +synonym: "musculus buccinator" RELATED LATIN [http://en.wikipedia.org/wiki/Buccinator_muscle] +synonym: "trumpeters muscle" NARROW [MFMO:0000002, NCBITaxon:9606] +xref: Buccinator:muscle +xref: EMAPA:37453 {source="MA:th"} +xref: FMA:46834 +xref: http://linkedlifedata.com/resource/umls/id/C0224121 +xref: http://www.snomedbrowser.com/Codes/Details/244747005 +xref: MA:0002272 +xref: MFMO:0000002 +xref: NCIT:C53150 +xref: UMLS:C0224121 {source="ncithesaurus:Buccinator"} +is_a: UBERON:0001577 ! facial muscle +intersection_of: UBERON:0001577 ! facial muscle +intersection_of: attaches_to UBERON:0001684 ! mandible +intersection_of: attaches_to UBERON:0002097 ! skin of body +intersection_of: attaches_to UBERON:0002397 ! maxilla +intersection_of: attaches_to UBERON:0011349 ! pterygomandibular raphe +intersection_of: attaches_to UBERON:0011386 ! facial modiolus +relationship: attaches_to UBERON:0001684 ! mandible +relationship: attaches_to UBERON:0002097 ! skin of body +relationship: attaches_to UBERON:0002397 ! maxilla +relationship: attaches_to UBERON:0011349 ! pterygomandibular raphe +relationship: attaches_to UBERON:0011386 ! facial modiolus +relationship: has_muscle_insertion UBERON:0011386 {notes="dbpedia says: in the fibers of the orbicularis oris", source="FEED"} ! facial modiolus +relationship: has_muscle_origin UBERON:0004528 {notes="from the alveolar processes of the maxillary bone and mandible temporomandibular joint", source="dbpedia"} ! alveolar ridge of mandible + +[Term] +id: UBERON:0001583 +name: extrinsic auricular muscle +def: "Auricular muscle attaching the cartilage of the ear to the epicranial aponeurosis. The 3 extrinsic auricular muscles in humans are: anterior auricular muscle superior auricular muscle posterior auricular muscle [WP,modified]." [http://en.wikipedia.org/wiki/Auriculares_muscles, http://www.daviddarling.info/encyclopedia/A/auricle.html] +xref: Auriculares:muscles +xref: EMAPA:37527 {source="MA:th"} +xref: FMA:46854 +xref: http://www.snomedbrowser.com/Codes/Details/244758001 +xref: MA:0001230 +is_a: UBERON:0001595 ! auricular muscle +intersection_of: UBERON:0001595 ! auricular muscle +intersection_of: has_muscle_insertion UBERON:0001848 ! auricular cartilage +intersection_of: has_muscle_origin UBERON:0006661 ! epicranial aponeurosis +relationship: has_muscle_insertion UBERON:0001848 ! auricular cartilage +relationship: has_muscle_origin UBERON:0006661 ! epicranial aponeurosis + +[Term] +id: UBERON:0001584 +name: left subclavian artery +def: "The subclavian artery that supplies the left pectoral appendage" [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "arteria subclavia (sinistra)" EXACT LATIN [FMA:4694, FMA:TA] +xref: EMAPA:37100 {source="MA:th"} +xref: FMA:4694 +xref: http://linkedlifedata.com/resource/umls/id/C0226262 +xref: http://www.snomedbrowser.com/Codes/Details/244245001 +xref: MA:0002046 +xref: NCIT:C32972 +xref: OpenCyc:Mx4rtW7hw6gEEdudWQACs5b6Bw +xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvp8u1JwpEbGdrcN5Y29ycA +xref: Subclavian:artery +xref: UMLS:C0226262 {source="ncithesaurus:Left_Subclavian_Artery"} +is_a: UBERON:0001533 ! subclavian artery +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0001533 ! subclavian artery +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0001585 +name: anterior vena cava +def: "A vein that carries deoxygenated blood from the upper half of the body into the right atrium of the heart." [http://en.wikipedia.org/wiki/Superior_vena_cava, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "cranial vena cava" RELATED [VHOG:0001195] +synonym: "precava" RELATED [] +synonym: "superior caval vein" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "superior vena cava" EXACT [FMA:4720] +synonym: "vena cava superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_vena_cava] +synonym: "vena cava superior" RELATED [BTO:0002683] +synonym: "vena maxima" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_vena_cava] +xref: BTO:0002683 +xref: EHDAA2:0001962 +xref: EHDAA:8726 +xref: EMAPA:18417 +xref: FMA:4720 +xref: GAID:549 +xref: galen:SuperiorVenaCava +xref: http://en.wikipedia.org/wiki/Superior_vena_cava +xref: http://linkedlifedata.com/resource/umls/id/C0042459 +xref: http://www.snomedbrowser.com/Codes/Details/181368006 +xref: MA:0000481 +xref: MESH:D014683 +xref: NCIT:C12816 +xref: UMLS:C0042459 {source="ncithesaurus:Superior_Vena_Cava"} +xref: VHOG:0001195 +is_a: UBERON:0004087 ! vena cava +intersection_of: UBERON:0004087 ! vena cava +intersection_of: drains UBERON:0000153 ! anterior region of body +relationship: drains UBERON:0000153 ! anterior region of body + +[Term] +id: UBERON:0001586 +name: internal jugular vein +def: "One of two jugular veins that collect the blood from the brain, the superficial parts of the face, and the neck. [WP,unvetted]." [http://en.wikipedia.org/wiki/Internal_jugular_vein] +subset: uberon_slim +synonym: "internal jugular" EXACT [EHDAA2:0000877] +synonym: "internal jugular venous tree" EXACT [] +synonym: "vena jugularis interna" RELATED LATIN [http://en.wikipedia.org/wiki/Internal_jugular_vein] +xref: AAO:0010236 +xref: EHDAA2:0000877 +xref: EHDAA:5407 +xref: EMAPA:17620 +xref: FMA:4724 +xref: galen:InternalJugularVein +xref: http://en.wikipedia.org/wiki/Internal_jugular_vein +xref: http://linkedlifedata.com/resource/umls/id/C0226550 +xref: http://www.snomedbrowser.com/Codes/Details/181372005 +xref: MA:0002157 +xref: NCIT:C32849 +xref: OpenCyc:Mx4rvqdb95wpEbGdrcN5Y29ycA +xref: RETIRED_EHDAA2:0000878 +xref: UMLS:C0226550 {source="ncithesaurus:Internal_Jugular_Vein"} +xref: XAO:0000382 +is_a: UBERON:0004711 ! jugular vein +relationship: drains UBERON:0000955 ! brain +relationship: drains UBERON:0001456 ! face + +[Term] +id: UBERON:0001587 +name: subclavian vein +def: "The subclavian vein is a paired large vein, one on either side of the body. Their diameter is approximately that of the smallest finger." [http://en.wikipedia.org/wiki/Subclavian_vein] +subset: uberon_slim +synonym: "subclavian venous tree" EXACT [] +synonym: "vena subclavia" EXACT LATIN [http://en.wikipedia.org/wiki/Subclavian_vein] +xref: AAO:0010510 +xref: EHDAA2:0001934 +xref: EHDAA:4455 +xref: EMAPA:17621 +xref: FMA:4725 +xref: GAID:546 +xref: galen:SubclavianVein +xref: http://linkedlifedata.com/resource/umls/id/C0038532 +xref: http://www.snomedbrowser.com/Codes/Details/181388005 +xref: MA:0002221 +xref: MESH:D013350 +xref: NCIT:C12794 +xref: OpenCyc:Mx4rvvvtMZwpEbGdrcN5Y29ycA +xref: Subclavian:vein +xref: UMLS:C0038532 {source="ncithesaurus:Subclavian_Vein"} +is_a: UBERON:0001638 ! vein +relationship: drains UBERON:0004710 ! pectoral appendage + +[Term] +id: UBERON:0001588 +name: vertebral vein +def: "The vertebral vein is formed in the suboccipital triangle, from numerous small tributaries which spring from the internal vertebral venous plexuses and issue from the vertebral canal above the posterior arch of the atlas. They unite with small veins from the deep muscles at the upper part of the back of the neck, and form a vessel which enters the foramen in the transverse process of the atlas, and descends, forming a dense plexus around the vertebral artery, in the canal formed by the foramina transversaria of the cervical vertebrae. This plexus ends in a single trunk, which emerges from the foramen transversarium of the sixth cervical vertebra, and opens at the root of the neck into the back part of the innominate vein near its origin, its mouth being guarded by a pair of valves. On the right side, it crosses the first part of the subclavian artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/Vertebral_vein] +subset: uberon_slim +synonym: "vena vertebralis" RELATED LATIN [http://en.wikipedia.org/wiki/Vertebral_vein] +xref: AAO:0010509 +xref: EMAPA:36271 +xref: FMA:4727 +xref: http://linkedlifedata.com/resource/umls/id/C0226560 +xref: http://www.snomedbrowser.com/Codes/Details/303961000 +xref: MA:0002262 +xref: NCIT:C53145 +xref: OpenCyc:Mx4rwKt8xJwpEbGdrcN5Y29ycA +xref: UMLS:C0226560 {source="ncithesaurus:Vertebral_Vein"} +xref: Vertebral:vein +is_a: UBERON:0001638 ! vein +relationship: drains UBERON:0002240 ! spinal cord + +[Term] +id: UBERON:0001589 +name: internal thoracic vein +def: "A vessel that drains the chest wall and breats and arises from the superior epigastric vein, accompanies the internal thoracic artery along its course and terminates in the brachiocephalic vein.." [http://en.wikipedia.org/wiki/Internal_thoracic_vein] +subset: uberon_slim +synonym: "internal mammary vein" RELATED INCONSISTENT [http://en.wikipedia.org/wiki/Internal_thoracic_vein] +synonym: "vena thoracica interna" RELATED LATIN [http://en.wikipedia.org/wiki/Internal_thoracic_vein] +xref: EMAPA:18641 +xref: FMA:4729 +xref: http://en.wikipedia.org/wiki/Internal_thoracic_vein +xref: http://linkedlifedata.com/resource/umls/id/C0226633 +xref: http://www.snomedbrowser.com/Codes/Details/281056008 +xref: MA:0002237 +xref: NCIT:C52698 +xref: UMLS:C0226633 {source="ncithesaurus:Internal_Thoracic_Vein"} +is_a: UBERON:0005194 {source="MA"} ! thoracic vein + +[Term] +id: UBERON:0001590 +name: pericardiacophrenic vein +def: "Vena comitans of the pericardiacophrenic arteries." [http://en.wikipedia.org/wiki/Pericardiacophrenic_veins] +synonym: "venae pericardiacophrenicae" RELATED LATIN [http://en.wikipedia.org/wiki/Pericardiacophrenic_veins] +xref: EMAPA:37178 {source="MA:th"} +xref: FMA:4742 +xref: http://linkedlifedata.com/resource/umls/id/C0501112 +xref: http://www.snomedbrowser.com/Codes/Details/361626007 +xref: MA:0002187 +xref: NCIT:C53061 +xref: Pericardiacophrenic:veins +xref: UMLS:C0501112 {source="ncithesaurus:Pericardiacophrenic_Vein"} +is_a: UBERON:0001638 ! vein + +[Term] +id: UBERON:0001591 +name: thymic vein +def: "A vein that drains blood from the thymus." [http://orcid.org/0000-0002-6601-2165] +synonym: "thymic tributary of brachiocephalic vein" EXACT [] +synonym: "vena thymica" EXACT LATIN [http://en.wikipedia.org/wiki/Thymic_veins] +synonym: "venae thymicae" RELATED LATIN [http://en.wikipedia.org/wiki/Thymic_veins] +xref: EMAPA:36325 +xref: FMA:4747 +xref: http://linkedlifedata.com/resource/umls/id/C0226698 +xref: http://www.snomedbrowser.com/Codes/Details/303432009 +xref: MA:0002246 +xref: NCIT:C53143 +xref: Thymic:veins +xref: UMLS:C0226698 {source="ncithesaurus:Thymic_Vein"} +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0002370 ! thymus +relationship: drains UBERON:0002370 ! thymus +relationship: part_of UBERON:0003711 ! brachiocephalic vein +relationship: tributary_of UBERON:0003711 ! brachiocephalic vein + +[Term] +id: UBERON:0001592 +name: bronchial vein +def: "The bronchial veins are small vessels that return blood from the larger bronchi and structures at the roots of the lungs. The right side drains into the azygos vein, while the left side drains into the left superior intercostal vein or the accessory hemiazygos vein. The bronchial veins are counterparts to the bronchial arteries. The veins, however, do not return all of the blood supplied by the arteries; much of the blood that is carried in the bronchial arteries is returned to the heart via the pulmonary veins. [WP,unvetted]." [http://en.wikipedia.org/wiki/Bronchial_veins] +subset: uberon_slim +synonym: "bronchial venous tree" EXACT [] +xref: Bronchial:veins +xref: EMAPA:36284 +xref: FMA:4749 +xref: http://linkedlifedata.com/resource/umls/id/C0226650 +xref: http://www.snomedbrowser.com/Codes/Details/198293000 +xref: MA:0002088 +xref: NCIT:C53031 +xref: UMLS:C0226650 {source="ncithesaurus:Bronchial_Vein"} +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0002185 ! bronchus +relationship: drains UBERON:0002185 ! bronchus + +[Term] +id: UBERON:0001593 +name: venous plexus +def: "A congregation of multiple veins." [http://en.wikipedia.org/wiki/Venous_plexus] +subset: uberon_slim +synonym: "plexus venosus" RELATED LATIN [http://en.wikipedia.org/wiki/Venous_plexus] +synonym: "rete venosum" RELATED LATIN [http://en.wikipedia.org/wiki/Venous_plexus] +synonym: "venous network" EXACT [] +xref: EMAPA:36327 +xref: FMA:4767 +xref: http://www.snomedbrowser.com/Codes/Details/322151008 +xref: MA:0000069 +xref: Venous:plexus +is_a: UBERON:0004537 ! blood vasculature +is_a: UBERON:0005629 ! vascular plexus +intersection_of: UBERON:0005629 ! vascular plexus +intersection_of: composed_primarily_of UBERON:0001638 ! vein +relationship: composed_primarily_of UBERON:0001638 ! vein + +[Term] +id: UBERON:0001594 +name: azygos vein +def: "An unpaired vein which in humans arises from the right ascending lumbar vein or the vena cava, enters the thorax through the aortic orifice in the diaphragm, and terminates in the superior vena cava; unlike humans, mice have a single and left-sided azygos vein that develops from the paired embryonic cardinal venous system and drains most of the right and left thoracic walls into the left anterior vena cava[MP]." [http://en.wikipedia.org/wiki/Azygos_vein, MP:0011569] +subset: pheno_slim +subset: uberon_slim +synonym: "azygos venous tree" EXACT [] +synonym: "vena azygos" RELATED LATIN [http://en.wikipedia.org/wiki/Azygos_vein] +xref: Azygos:vein +xref: EMAPA:18250 +xref: FMA:4838 +xref: GAID:528 +xref: galen:AzygosVein +xref: http://linkedlifedata.com/resource/umls/id/C0004526 +xref: MA:0002085 +xref: MESH:D001401 +xref: NCIT:C53029 +xref: UMLS:C0004526 {source="ncithesaurus:Azygos_Vein"} +is_a: UBERON:0001638 ! vein +relationship: develops_from UBERON:0008268 {source="ISBN:0443065837"} ! right supracardinal vein + +[Term] +id: UBERON:0001595 +name: auricular muscle +def: "A muscle that is part of the pinna and is attached to the auricular cartilage" [http://orcid.org/0000-0002-6601-2165] +synonym: "attolens aurem muscle" RELATED [http://en.wikipedia.org/wiki/Auricular_muscles] +synonym: "attrahens aurem muscle" RELATED [http://en.wikipedia.org/wiki/Auricular_muscles] +synonym: "auriclular" BROAD [] +synonym: "auriculares" RELATED [http://en.wikipedia.org/wiki/Auricular_muscles] +synonym: "auriculares anterior" RELATED [http://en.wikipedia.org/wiki/Auricular_muscles] +synonym: "auriculares muscles" RELATED [http://en.wikipedia.org/wiki/Auricular_muscles] +synonym: "auricularis" RELATED [http://en.wikipedia.org/wiki/Auricular_muscles] +synonym: "auricularis muscle" RELATED [http://en.wikipedia.org/wiki/Auricular_muscles] +synonym: "auricularis muscles" RELATED [http://en.wikipedia.org/wiki/Auricular_muscles] +synonym: "muscle of auricle" EXACT [] +synonym: "musculi auriculares" EXACT LATIN [http://en.wikipedia.org/wiki/Auricular_muscles] +synonym: "temporoparietalis" RELATED [http://en.wikipedia.org/wiki/Auricular_muscles] +xref: Auricular:muscles +xref: EMAPA:35159 +xref: FMA:48966 +xref: http://www.snomedbrowser.com/Codes/Details/244757006 +xref: MA:0001229 +is_a: UBERON:0001630 ! muscle organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: attaches_to UBERON:0001848 ! auricular cartilage +relationship: part_of UBERON:0001757 {source="MA"} ! pinna + +[Term] +id: UBERON:0001596 +name: intrinsic auricular muscle +def: "Auricular muscle attached only to the cartilage of the ear and not to the epicranial aponeurosis" [http://www.daviddarling.info/encyclopedia/A/auricle.html] +xref: EMAPA:37528 {source="MA:th"} +xref: FMA:48967 +xref: http://www.snomedbrowser.com/Codes/Details/244762007 +xref: MA:0001231 +is_a: UBERON:0001595 {source="FMA"} ! auricular muscle + +[Term] +id: UBERON:0001597 +name: masseter muscle +def: "Pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors, is innervated by masseteric nerve branches of the trigeminal nerve (CN V), and attaches to mandible and zygomatic arch." [https://doi.org/10.1093/icb/icr067, MFMO:0000075] +subset: efo_slim +subset: feed_aligned +subset: pheno_slim +subset: uberon_slim +synonym: "masseter" EXACT [BTO:0001755, FMA:48996, MA:0002343] +synonym: "musculus masseter" RELATED LATIN [http://en.wikipedia.org/wiki/Masseter_muscle] +xref: BTO:0001755 +xref: EFO:0001424 +xref: EHDAA2:0001067 +xref: EHDAA:10561 +xref: EMAPA:25135 +xref: FMA:48996 +xref: http://linkedlifedata.com/resource/umls/id/C0024876 +xref: http://www.snomedbrowser.com/Codes/Details/181738000 +xref: MA:0002343 +xref: Masseter:muscle +xref: MESH:D008406 +xref: MFMO:0000075 +xref: NCIT:C13074 +xref: UMLS:C0024876 {source="ncithesaurus:Masseter_Muscle"} +xref: VHOG:0000823 +is_a: UBERON:0003681 {source="FMA"} ! masticatory muscle +intersection_of: UBERON:0018544 ! trigeminal nerve muscle +intersection_of: attaches_to UBERON:0002500 ! zygomatic arch +intersection_of: attaches_to UBERON:0011344 ! lateral surface of mandible +relationship: attaches_to UBERON:0002500 ! zygomatic arch +relationship: attaches_to UBERON:0011344 ! lateral surface of mandible +relationship: has_muscle_insertion UBERON:0001684 {source="FEED"} ! mandible +relationship: has_muscle_origin UBERON:0002397 {notes="zygomatic arch and maxilla", source="dbpedia"} ! maxilla +relationship: has_muscle_origin UBERON:0002500 {notes="zygomatic arch and maxilla", source="dbpedia"} ! zygomatic arch +relationship: innervated_by UBERON:0011321 ! masseteric nerve +relationship: part_of UBERON:0001567 {source="FMA"} ! cheek + +[Term] +id: UBERON:0001598 +name: temporalis muscle +def: "Pharyngeal arch 1 muscle that is innervated by the deep temporal branches of the trigeminal nerve and attaches to the wall of the braincase (including the cranial vault) and mandible." [MFMO:0000085] +subset: pheno_slim +subset: uberon_slim +synonym: "jaw adductor muscle" BROAD [] +synonym: "musculus temporalis" EXACT LATIN [FMA:49006, FMA:TA] +synonym: "musculus temporalis" RELATED LATIN [http://en.wikipedia.org/wiki/Temporal_muscle] +synonym: "temporal muscle" EXACT [] +synonym: "temporalis" EXACT [MA:0002390] +xref: EHDAA2:0002001 +xref: EHDAA:10565 +xref: EMAPA:25138 +xref: FMA:49006 +xref: GAID:148 +xref: http://linkedlifedata.com/resource/umls/id/C0039487 +xref: http://www.snomedbrowser.com/Codes/Details/181739008 +xref: MA:0002390 +xref: MESH:D013703 +xref: NCIT:C33743 +xref: Temporal:muscle +xref: UMLS:C0039487 {source="ncithesaurus:Temporal_Muscle"} +xref: VHOG:0000929 +is_a: UBERON:0003681 ! masticatory muscle +relationship: has_muscle_antagonist UBERON:0005467 {source="dbpedia"} ! platysma +relationship: has_muscle_insertion UBERON:0004660 {notes="coronoid process of the mandible.", source="dbpedia"} ! mandible coronoid process + +[Term] +id: UBERON:0001599 +name: stapedius muscle +def: "The muscle that stabilizes the stapes bone. The stapedius emerges from a pinpoint foramen in the apex of the pyramidal eminence (a hollow, cone-shaped prominence in the posterior wall of the tympanic cavity), and inserts into the neck of the stapes. [WP,unvetted]." [http://en.wikipedia.org/wiki/Stapedius_muscle] +subset: pheno_slim +subset: uberon_slim +synonym: "musculus stapedius" RELATED LATIN [http://en.wikipedia.org/wiki/Stapedius_muscle] +synonym: "stapedius" EXACT [EHDAA2:0001909] +xref: EHDAA:9029 +xref: EMAPA:18586 +xref: FMA:49027 +xref: GAID:164 +xref: http://linkedlifedata.com/resource/umls/id/C0038151 +xref: http://www.snomedbrowser.com/Codes/Details/244780003 +xref: MA:0001220 +xref: MESH:D013198 +xref: NCIT:C33611 +xref: Stapedius:muscle +xref: UMLS:C0038151 {source="ncithesaurus:Stapedius_Muscle"} +xref: VHOG:0000813 +is_a: UBERON:0001577 ! facial muscle +is_a: UBERON:0004113 ! muscle of auditory ossicle +intersection_of: UBERON:0004113 ! muscle of auditory ossicle +intersection_of: attaches_to UBERON:0001687 ! stapes bone +relationship: attaches_to UBERON:0001687 ! stapes bone +relationship: develops_from UBERON:0010929 ! stapedius pre-muscle condensation +relationship: has_muscle_insertion UBERON:0001687 {notes="neck of stapes", source="dbpedia"} ! stapes bone + +[Term] +id: UBERON:0001600 +name: tensor tympani +alt_id: UBERON:0005238 +def: "The larger of the two muscles of the tympanic cavity, is contained in the bony canal above the osseous portion of the auditory tube. Its role is to dampen sounds produced from chewing. It arises from the cartilaginous portion of the auditory tube and the adjoining part of the great wing of the sphenoid, as well as from the osseous canal in which it is contained. Passing backward through the canal, it ends in a slender tendon which enters the tympanic cavity, makes a sharp bend around the extremity of the septum, known as the processus cochleariformis[1], and is inserted into the manubrium of the malleus, near its root[WP]." [http://en.wikipedia.org/wiki/Tensor_tympani_muscle] +subset: uberon_slim +synonym: "eustachian muscle" EXACT [] +synonym: "M. tensor tympani" RELATED [http://en.wikipedia.org/wiki/Tensor_tympani_muscle] +synonym: "musculus tensor tympani" RELATED LATIN [http://en.wikipedia.org/wiki/Tensor_tympani_muscle] +synonym: "tensor tympani muscle" EXACT [http://en.wikipedia.org/wiki/Tensor_tympani_muscle] +synonym: "tympanic muscle" RELATED [http://en.wikipedia.org/wiki/Tensor_tympani_muscle] +xref: EHDAA2:0002002 +xref: EHDAA:10167 +xref: EHDAA:10191 +xref: EMAPA:18587 +xref: FMA:49028 +xref: GAID:166 +xref: http://en.wikipedia.org/wiki/Tensor_tympani_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0039529 +xref: http://www.snomedbrowser.com/Codes/Details/244779001 +xref: MA:0001221 +xref: MESH:D013719 +xref: NCIT:C33748 +xref: UMLS:C0039529 {source="ncithesaurus:Tensor_Tympani"} +xref: VHOG:0000698 +is_a: UBERON:0004113 ! muscle of auditory ossicle +is_a: UBERON:0018544 ! trigeminal nerve muscle +intersection_of: UBERON:0004113 ! muscle of auditory ossicle +intersection_of: attaches_to UBERON:0001689 ! malleus bone +relationship: attaches_to UBERON:0001689 ! malleus bone +relationship: develops_from UBERON:0010935 ! tensor tympani pre-muscle condensation +relationship: has_muscle_insertion UBERON:0006722 {notes="handle of the malleus", source="dbpedia"} ! manubrium of malleus +relationship: has_muscle_origin UBERON:0002393 {source="dbpedia"} ! pharyngotympanic tube +relationship: innervated_by UBERON:0000375 {notes="medial pterygoid nerve from the mandibular nerve", source="dbpedia"} ! mandibular nerve + +[Term] +id: UBERON:0001601 +name: extra-ocular muscle +alt_id: UBERON:0006229 +def: "Skeletal muscle derived from cranial mesoderm and controls eye movements." [GO:0002074, http://en.wikipedia.org/wiki/Extraocular_muscles] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "extra-ocular skeletal muscle" EXACT [] +synonym: "extraocular muscle" EXACT [FMA:49033] +synonym: "extraocular musculature" EXACT [ZFA:0000511] +synonym: "extraocular skeletal muscle" EXACT [MA:0001271] +synonym: "extrinsic eye muscle" EXACT [OBOL:automatic] +synonym: "extrinsic muscle of eyeball" EXACT [FMA:49033] +synonym: "extrinsic ocular muscle" EXACT [EHDAA2:0000482] +synonym: "musculi externi bulbi oculi" RELATED LATIN [http://en.wikipedia.org/wiki/Extraocular_muscles] +xref: AAO:0010028 +xref: BTO:0001579 +xref: CALOHA:TS-0305 +xref: EFO:0001921 +xref: EHDAA2:0000482 +xref: EHDAA:5729 +xref: EMAPA:18234 +xref: Extraocular:muscles +xref: FMA:49033 +xref: http://www.snomedbrowser.com/Codes/Details/181150000 +xref: MA:0001271 +xref: TAO:0000511 +xref: VHOG:0000549 +xref: ZFA:0000511 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004277 ! eye muscle +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010959 ! craniocervical muscle +relationship: develops_from UBERON:0006230 {source="EHDAA2"} ! extrinsic ocular pre-muscle mass +relationship: part_of UBERON:0003269 {source="EHDAA2"} ! skeletal muscle tissue of eye +relationship: part_of UBERON:0035639 {source="HPO:pr"} ! ocular adnexa + +[Term] +id: UBERON:0001602 +name: medial rectus extraocular muscle +alt_id: UBERON:0004836 +def: "The medial rectus muscle is a muscle in the orbit. As with most of the muscles of the orbit, it is innervated by the inferior division of the oculomotor nerve (Cranial Nerve III). This muscle shares an origin with several other extrinsic eye muscles, the anulus tendineus, or common tendon. It is the largest of the extraocular muscles and its only action is adduction of the eyeball. [WP,unvetted]." [http://en.wikipedia.org/wiki/Medial_rectus_muscle] +comment: Taxon notes (from VHOG): "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.331 [VHOG:0001127] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "m. rectus medialis" EXACT [] +synonym: "medial recti" RELATED PLURAL [ZFA:0000301] +synonym: "medial rectus" EXACT [FMA:49037] +synonym: "medial rectus extraocular muscle" EXACT [MA:0001281] +synonym: "medial rectus muscle" EXACT [] +synonym: "musculus rectus medialis" EXACT [AAO:0010113] +synonym: "musculus rectus medialis bulbi" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_rectus_muscle] +xref: AAO:0010113 +xref: FMA:49037 +xref: http://en.wikipedia.org/wiki/Medial_rectus_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0582820 +xref: http://www.snomedbrowser.com/Codes/Details/181151001 +xref: MA:0001281 +xref: NCIT:C33068 +xref: TAO:0000301 +xref: UMLS:C0582820 {source="ncithesaurus:Medial_Rectus_Muscle"} +xref: VHOG:0001127 +xref: ZFA:0000301 +is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle +disjoint_from: UBERON:0001603 {source="lexical"} ! lateral rectus extra-ocular muscle +relationship: innervated_by UBERON:0001643 {notes="inferior division of the oculomotor nerve", source="dbpedia"} ! oculomotor nerve +relationship: part_of UBERON:0002376 ! cranial muscle + +[Term] +id: UBERON:0001603 +name: lateral rectus extra-ocular muscle +alt_id: UBERON:0004837 +def: "The lateral rectus muscle is a muscle in the orbit. It is one of six extraocular muscles that control the movements of the eye (abduction in this case) and the only muscle innervated by the abducens nerve, cranial nerve VI. [WP,unvetted]." [http://en.wikipedia.org/wiki/Lateral_rectus_muscle] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "lateral extraocular muscle" RELATED [] +synonym: "lateral recti" RELATED PLURAL [ZFA:0000383] +synonym: "lateral rectus" EXACT [FMA:49038] +synonym: "lateral rectus extraocular muscle" EXACT [MA:0001280] +synonym: "lateral rectus muscle" EXACT [] +synonym: "M. rectus lateralis" EXACT [] +synonym: "musculus rectus lateralis" EXACT [AAO:0010107] +synonym: "musculus rectus lateralis bulbi" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_rectus_muscle] +synonym: "posterior rectus" EXACT [ZFA:0000383, ZFIN:ZDB-PUB-970121-6] +xref: AAO:0010107 +xref: FMA:49038 +xref: http://en.wikipedia.org/wiki/Lateral_rectus_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0582821 +xref: http://www.snomedbrowser.com/Codes/Details/181152008 +xref: MA:0001280 +xref: NCIT:C32945 +xref: TAO:0000383 +xref: UMLS:C0582821 {source="ncithesaurus:Lateral_Rectus_Muscle"} +xref: VHOG:0001129 +xref: ZFA:0000383 +is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle +disjoint_from: UBERON:0003250 ! rectus capitis lateralis muscle +relationship: innervated_by UBERON:0001646 {source="dbpedia"} ! abducens nerve + +[Term] +id: UBERON:0001604 +name: levator palpebrae superioris +def: "The levator palpebrae superioris (or levator muscle of upper eyelid) is the muscle in the orbit that elevates the superior (upper) eyelid. [WP,unvetted]." [http://en.wikipedia.org/wiki/Levator_palpebrae_superioris] +subset: pheno_slim +subset: uberon_slim +xref: EMAPA:36652 +xref: FMA:49041 +xref: http://en.wikipedia.org/wiki/Levator_palpebrae_superioris +xref: http://linkedlifedata.com/resource/umls/id/C0224134 +xref: http://www.snomedbrowser.com/Codes/Details/244774006 +xref: MA:0001272 +xref: NCIT:C52802 +xref: UMLS:C0224134 {source="ncithesaurus:Levator_Palpebrae_Superioris"} +is_a: UBERON:0001601 {source="FMA"} ! extra-ocular muscle +relationship: has_muscle_insertion UBERON:0004772 ! eyelid tarsus +relationship: has_muscle_origin UBERON:0001677 ! sphenoid bone +relationship: part_of UBERON:0001711 {source="FMA"} ! eyelid + +[Term] +id: UBERON:0001605 +name: ciliary muscle +def: "The ciliary muscle is a ring of smooth muscle in the middle layer of the eye that controls the eye's accommodation for viewing objects at varying distances and regulates the flow of aqueous humour through Schlemm's canal. [WP,unvetted]." [http://en.wikipedia.org/wiki/Ciliary_muscle] +subset: pheno_slim +subset: uberon_slim +synonym: "Bowman`s muscles" RELATED [BTO:0000654] +synonym: "ciliaris" RELATED [http://en.wikipedia.org/wiki/Ciliary_muscle] +synonym: "musculus ciliaris" RELATED LATIN [http://en.wikipedia.org/wiki/Ciliary_muscle] +synonym: "musculus ciliarus" EXACT [BTO:0000654] +xref: BTO:0000654 +xref: Ciliary:muscle +xref: EMAPA:35240 +xref: FMA:49151 +xref: http://linkedlifedata.com/resource/umls/id/C0559230 +xref: http://www.snomedbrowser.com/Codes/Details/280862009 +xref: MA:0001269 +xref: NCIT:C32315 +xref: UMLS:C0559230 {source="ncithesaurus:Ciliary_Muscle"} +is_a: UBERON:0003386 {source="MA"} ! smooth muscle of eye +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011222 {source="FMA"} ! intra-ocular muscle +relationship: part_of UBERON:0001775 {source="FMA"} ! ciliary body + +[Term] +id: UBERON:0001606 +name: muscle of iris +def: "." [http://en.wikipedia.org/wiki/Iris_muscle] +subset: uberon_slim +synonym: "iris muscle" EXACT [] +synonym: "iris muscle organ" EXACT [OBOL:automatic] +synonym: "muscle organ of iris" EXACT [OBOL:automatic] +xref: EMAPA:35448 +xref: FMA:49154 +xref: http://www.snomedbrowser.com/Codes/Details/280888007 +xref: Iris:muscle +xref: MA:0001287 +is_a: UBERON:0011222 {source="FMA"} ! intra-ocular muscle +intersection_of: UBERON:0001630 ! muscle organ +intersection_of: part_of UBERON:0001769 ! iris +relationship: part_of UBERON:0001769 ! iris + +[Term] +id: UBERON:0001607 +name: sphincter pupillae +def: "A sphincter muscle that is part of the iris." [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] +subset: uberon_slim +synonym: "circular fibers" RELATED [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] +synonym: "constrictor pupillae" RELATED [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] +synonym: "iris constrictor" RELATED [] +synonym: "iris constrictor muscle" RELATED [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] +synonym: "iris sphincter" RELATED [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] +synonym: "iris sphincter muscle" EXACT [BTO:0000656] +synonym: "M. sphincter pupillae" EXACT [] +synonym: "m. sphincter pupillae" RELATED LATIN [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] +synonym: "musculus sphincter pupillae" EXACT [BTO:0000656] +synonym: "pupillary constrictor muscle" RELATED [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] +synonym: "pupillary sphincter" RELATED [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] +synonym: "pupillary sphincter muscle" RELATED [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] +synonym: "sphincter muscle of pupil" EXACT [BTO:0000656] +synonym: "sphincter pupillae" RELATED [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] +synonym: "sphincter pupillae muscle" RELATED [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] +synonym: "spincter pupillae" RELATED [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] +xref: BTO:0000656 +xref: EMAPA:35788 +xref: FMA:49157 +xref: http://en.wikipedia.org/wiki/Iris_sphincter_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0229189 +xref: http://www.snomedbrowser.com/Codes/Details/280889004 +xref: MA:0001289 +xref: NCIT:C33586 +xref: UMLS:C0229189 {source="ncithesaurus:Sphincter_Pupillae_Muscle"} +is_a: UBERON:0001606 ! muscle of iris +is_a: UBERON:0004234 {source="BTO"} ! iris smooth muscle +is_a: UBERON:0007521 ! smooth muscle sphincter +intersection_of: UBERON:0004590 ! sphincter muscle +intersection_of: part_of UBERON:0001769 ! iris +relationship: develops_from UBERON:0002346 {source="ISBN:0781772214"} ! neurectoderm +relationship: has_muscle_antagonist UBERON:0001608 {source="dbpedia"} ! dilatator pupillae +relationship: has_muscle_insertion UBERON:0001769 {notes="encircles iris", source="dbpedia"} ! iris +relationship: has_muscle_origin UBERON:0001769 {notes="encircles iris", source="dbpedia"} ! iris + +[Term] +id: UBERON:0001608 +name: dilatator pupillae +def: "A smooth muscle of the eye, running radially in the iris that functions as a dilator. [WP,unvetted]." [http://en.wikipedia.org/wiki/Iris_dilator_muscle] +subset: uberon_slim +synonym: "dilator muscle of pupil" EXACT [] +synonym: "dilator of pupil" EXACT [] +synonym: "dilator pupillae" EXACT [] +synonym: "dilator pupillae muscle" EXACT [http://en.wikipedia.org/wiki/Iris_dilator_muscle] +synonym: "dilator pupillae muscle" RELATED [BTO:0001371] +synonym: "iris dilator" RELATED [http://en.wikipedia.org/wiki/Iris_dilator_muscle] +synonym: "iris dilator muscle" EXACT [BTO:0001371] +synonym: "musculus dilatator pupillae" EXACT LATIN [FMA:49158, FMA:TA] +synonym: "musculus dilatator pupillae" RELATED LATIN [http://en.wikipedia.org/wiki/Iris_dilator_muscle] +synonym: "musculus dilator pupillae" RELATED [BTO:0001371] +synonym: "pupil dilator" RELATED [http://en.wikipedia.org/wiki/Iris_dilator_muscle] +synonym: "pupil dilator muscle" RELATED [http://en.wikipedia.org/wiki/Iris_dilator_muscle] +synonym: "pupillary dilator" RELATED [http://en.wikipedia.org/wiki/Iris_dilator_muscle] +synonym: "pupillary dilator muscle" EXACT [http://en.wikipedia.org/wiki/Iris_dilator_muscle] +synonym: "pupillary muscle" RELATED [http://en.wikipedia.org/wiki/Iris_dilator_muscle] +synonym: "radial muscle" RELATED [http://en.wikipedia.org/wiki/Iris_dilator_muscle] +synonym: "radial muscle of iris" EXACT [http://en.wikipedia.org/wiki/Iris_dilator_muscle] +synonym: "radiating fibers" RELATED [http://en.wikipedia.org/wiki/Iris_dilator_muscle] +xref: BTO:0001371 +xref: EMAPA:35286 +xref: FMA:49158 +xref: http://en.wikipedia.org/wiki/Iris_dilator_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0229190 +xref: http://www.snomedbrowser.com/Codes/Details/280890008 +xref: MA:0001288 +xref: NCIT:C32463 +xref: UMLS:C0229190 {source="ncithesaurus:Dilator_Pupillae_Muscle"} +is_a: UBERON:0004234 {source="BTO"} ! iris smooth muscle +relationship: develops_from UBERON:0002346 {source="ISBN:0781772214"} ! neurectoderm +relationship: has_muscle_antagonist UBERON:0001607 {source="dbpedia"} ! sphincter pupillae +relationship: has_muscle_insertion UBERON:0001769 {notes="inner margins of iris", source="dbpedia"} ! iris +relationship: has_muscle_origin UBERON:0001769 {notes="outer margins of iris", source="dbpedia"} ! iris + +[Term] +id: UBERON:0001609 +name: isthmus of thyroid gland +def: "A narrow median bridge that joins together the lower thirds of the two lateral (right and left) lobes of the thyroid gland and usually covers the second and the third tracheal rings; the thyroid isthmus is variable in presence and size, can change shape and size, and can encompass a cranially extending pyramid lobe (lobus pyramidalis or processus pyramidalis), remnant of the thyroglossal duct" [MP:0013163] +subset: uberon_slim +synonym: "isthmus" BROAD [VHOG:0000739] +synonym: "isthmus glandulae thyroideae" EXACT LATIN [] +synonym: "isthmus glandulae thyroideae" RELATED LATIN [http://en.wikipedia.org/wiki/Thyroid_isthmus] +synonym: "thyroid gland isthmus" EXACT [] +synonym: "thyroid isthmus" EXACT [] +xref: EHDAA2:0002031 +xref: EHDAA:5777 +xref: EMAPA:18195 +xref: FMA:49178 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2643 +xref: http://linkedlifedata.com/resource/umls/id/C0229583 +xref: http://www.snomedbrowser.com/Codes/Details/245539003 +xref: MA:0000727 +xref: NCIT:C32887 +xref: Thyroid:isthmus +xref: UMLS:C0229583 {source="ncithesaurus:Thyroid_Gland_Isthmus"} +xref: VHOG:0000739 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004119 ! endoderm-derived structure +disjoint_from: UBERON:0003052 ! midbrain-hindbrain boundary +relationship: connects UBERON:0001118 ! lobe of thyroid gland +relationship: part_of UBERON:0002046 ! thyroid gland + +[Term] +id: UBERON:0001610 +name: lingual artery +def: "The lingual artery arises from the external carotid between the superior thyroid and facial artery[WP]." [http://en.wikipedia.org/wiki/Lingual_artery] +subset: uberon_slim +synonym: "arteria lingualis" RELATED LATIN [http://en.wikipedia.org/wiki/Lingual_artery] +synonym: "lingual branch of external carotid artery" EXACT [] +xref: AAO:0010492 +xref: EMAPA:36324 +xref: FMA:49526 +xref: http://linkedlifedata.com/resource/umls/id/C0226104 +xref: http://www.snomedbrowser.com/Codes/Details/181327002 +xref: Lingual:artery +xref: MA:0001992 +xref: NCIT:C52961 +xref: OpenCyc:Mx4rvfqDCZwpEbGdrcN5Y29ycA +xref: UMLS:C0226104 {source="ncithesaurus:Lingual_Artery"} +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:0035398 ! branch of external carotid artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0001723 ! tongue +relationship: in_lateral_side_of UBERON:0001723 {source="FMA-abduced-lr"} ! tongue +relationship: part_of UBERON:0001723 ! tongue +relationship: supplies UBERON:0001723 ! tongue + +[Term] +id: UBERON:0001611 +name: sublingual artery +def: "A branch of the lingual artery that supplies the sublingual gland." [http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "arteria sublingualis" RELATED LATIN [http://en.wikipedia.org/wiki/Sublingual_artery] +synonym: "sublingual branch of lingual artery" EXACT [] +xref: AAO:0010491 +xref: EMAPA:37115 {source="MA:th"} +xref: FMA:49543 +xref: http://linkedlifedata.com/resource/umls/id/C0226106 +xref: http://www.snomedbrowser.com/Codes/Details/368706006 +xref: MA:0002049 +xref: NCIT:C53002 +xref: Sublingual:artery +xref: UMLS:C0226106 {source="ncithesaurus:Sublingual_Artery"} +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0001832 ! sublingual gland +relationship: branching_part_of UBERON:0001610 {source="FMA"} ! lingual artery +relationship: part_of UBERON:0001610 ! lingual artery +relationship: supplies UBERON:0001832 ! sublingual gland + +[Term] +id: UBERON:0001612 +name: facial artery +def: "A branch of the external carotid artery that supplies structures of the face. [WP,unvetted]." [http://en.wikipedia.org/wiki/Facial_artery] +subset: uberon_slim +synonym: "arteria maxillaris externa" RELATED LATIN [http://en.wikipedia.org/wiki/Facial_artery] +synonym: "external maxillary artery" RELATED [] +xref: EMAPA:19213 +xref: Facial:artery +xref: FMA:49549 +xref: http://linkedlifedata.com/resource/umls/id/C0226109 +xref: http://www.snomedbrowser.com/Codes/Details/181328007 +xref: MA:0001950 +xref: NCIT:C32578 +xref: OpenCyc:Mx4rwCt95ZwpEbGdrcN5Y29ycA +xref: UMLS:C0226109 {source="ncithesaurus:Facial_Artery"} +is_a: UBERON:0035398 ! branch of external carotid artery +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0001070 ! external carotid artery +intersection_of: supplies UBERON:0001456 ! face +relationship: supplies UBERON:0001456 ! face + +[Term] +id: UBERON:0001613 +name: occipital artery +def: "The occipital artery arises opposite the facial artery, its path is below the posterior belly of digastric to the occipital region. This artery supplies blood to the back of the scalp and sterno-mastoid muscles. Other muscles it supplies are deep muscles in the back and neck. [WP,unvetted]." [http://en.wikipedia.org/wiki/Occipital_artery] +subset: uberon_slim +synonym: "arteria occipitalis" RELATED LATIN [http://en.wikipedia.org/wiki/Occipital_artery] +xref: EMAPA:37672 {source="MA:th"} +xref: FMA:49586 +xref: http://linkedlifedata.com/resource/umls/id/C0226117 +xref: http://www.snomedbrowser.com/Codes/Details/244219005 +xref: MA:0002009 +xref: NCIT:C33194 +xref: Occipital:artery +xref: OpenCyc:Mx4rwC1IFJwpEbGdrcN5Y29ycA +xref: UMLS:C0226117 {source="ncithesaurus:Occipital_Artery"} +is_a: UBERON:0035398 ! branch of external carotid artery +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0001070 ! external carotid artery +intersection_of: supplies UBERON:0000403 ! scalp +intersection_of: supplies UBERON:0002377 ! muscle of neck +relationship: supplies UBERON:0000403 ! scalp +relationship: supplies UBERON:0002377 ! muscle of neck + +[Term] +id: UBERON:0001614 +name: superficial temporal artery +def: "A major artery of the head that arises from the external carotid artery when it bifurcates into the superficial temporal artery and maxillary artery. Its pulse is palpable superior to the zygomatic arch, anterior and superior to the tragus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Superficial_temporal_artery] +subset: uberon_slim +synonym: "arteria temporalis superficialis" RELATED LATIN [http://en.wikipedia.org/wiki/Superficial_temporal_artery] +xref: BTO:0003747 +xref: EMAPA:37118 {source="MA:th"} +xref: FMA:49650 +xref: http://en.wikipedia.org/wiki/Superficial_temporal_artery +xref: http://www.snomedbrowser.com/Codes/Details/181325005 +xref: MA:0002062 +xref: OpenCyc:Mx4rv33WkZwpEbGdrcN5Y29ycA +is_a: UBERON:0001632 ! temporal artery +is_a: UBERON:0035398 ! branch of external carotid artery + +[Term] +id: UBERON:0001615 +name: transverse facial artery +def: "The transverse facial artery is an artery that branches from the superficial temporal artery and runs across the face. [WP,unvetted]." [http://en.wikipedia.org/wiki/Transverse_facial_artery] +subset: uberon_slim +synonym: "arteria transversa faciei" RELATED LATIN [http://en.wikipedia.org/wiki/Transverse_facial_artery] +xref: EMAPA:37130 {source="MA:th"} +xref: FMA:49657 +xref: http://en.wikipedia.org/wiki/Transverse_facial_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226132 +xref: http://www.snomedbrowser.com/Codes/Details/146551008 +xref: MA:0002068 +xref: NCIT:C53025 +xref: UMLS:C0226132 {source="ncithesaurus:Transverse_Facial_Artery"} +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0013648 ! masseteric artery +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0001614 ! superficial temporal artery +intersection_of: supplies UBERON:0001597 ! masseter muscle +intersection_of: supplies UBERON:0001831 ! parotid gland +relationship: branching_part_of UBERON:0001614 ! superficial temporal artery +relationship: part_of UBERON:0001614 ! superficial temporal artery +relationship: supplies UBERON:0001831 ! parotid gland + +[Term] +id: UBERON:0001616 +name: maxillary artery +def: "An artery that supplies deep structures of the face. It comes just out behind the neck of the mandible. [WP,unvetted]." [http://en.wikipedia.org/wiki/Maxillary_artery] +subset: uberon_slim +synonym: "arteria maxillaris" RELATED LATIN [http://en.wikipedia.org/wiki/Maxillary_artery] +synonym: "internal maxillary artery" RELATED [] +xref: EHDAA2:0001069 +xref: EHDAA:7357 +xref: EMAPA:17311 +xref: FMA:49675 +xref: GAID:498 +xref: http://linkedlifedata.com/resource/umls/id/C0024949 +xref: http://www.snomedbrowser.com/Codes/Details/181326006 +xref: MA:0001919 +xref: Maxillary:artery +xref: MESH:D008438 +xref: NCIT:C34205 +xref: OpenCyc:Mx4rwDDJ45wpEbGdrcN5Y29ycA +xref: UMLS:C0024949 {source="ncithesaurus:Maxillary_Artery"} +is_a: UBERON:0001637 ! artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001637 ! artery +intersection_of: directly_develops_from UBERON:0003118 ! pharyngeal arch artery 1 +relationship: develops_from UBERON:0003118 ! pharyngeal arch artery 1 +relationship: directly_develops_from UBERON:0003118 ! pharyngeal arch artery 1 + +[Term] +id: UBERON:0001617 +name: mental artery +def: "The mental branch of inferior alveolar artery escapes with the nerve at the mental foramen, supplies the chin, and anastomoses with the submental and inferior labial arteries. [WP,unvetted]." [http://en.wikipedia.org/wiki/Mental_artery] +subset: uberon_slim +synonym: "mental branch of inferior alveolar artery" EXACT [] +synonym: "ramus mentalis (arteria alveolaris inferior)" EXACT LATIN [FMA:49701, FMA:TA] +xref: EMAPA:37105 {source="MA:th"} +xref: FMA:49701 +xref: http://en.wikipedia.org/wiki/Mental_part_of_inferior_alveolar_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226144 +xref: http://www.snomedbrowser.com/Codes/Details/147561008 +xref: MA:0002002 +xref: NCIT:C52973 +xref: UMLS:C0226144 {source="ncithesaurus:Mental_Artery"} +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0014693 ! inferior alveolar artery +intersection_of: supplies UBERON:0008199 ! chin +relationship: branching_part_of UBERON:0014693 ! inferior alveolar artery +relationship: part_of UBERON:0014693 ! inferior alveolar artery +relationship: supplies UBERON:0008199 ! chin + +[Term] +id: UBERON:0001618 +name: buccal artery +def: "The buccal artery (buccinator artery) is small and runs obliquely forward, between the Pterygoideus internus and the insertion of the Temporalis, to the outer surface of the Buccinator, to which it is distributed, anastomosing with branches of the external maxillary and with the infraorbital. [WP,unvetted]." [http://en.wikipedia.org/wiki/Buccal_artery] +subset: uberon_slim +synonym: "arteria buccalis" RELATED LATIN [http://en.wikipedia.org/wiki/Buccal_artery] +synonym: "arteria buccinatoria" RELATED LATIN [http://en.wikipedia.org/wiki/Buccal_artery] +xref: Buccal:artery +xref: EMAPA:37073 {source="MA:th"} +xref: FMA:49754 +xref: http://linkedlifedata.com/resource/umls/id/C0226151 +xref: http://www.snomedbrowser.com/Codes/Details/148066005 +xref: MA:0001924 +xref: NCIT:C52847 +xref: UMLS:C0226151 {source="ncithesaurus:Buccal_Artery"} +is_a: UBERON:0001637 ! artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0001616 ! maxillary artery +intersection_of: supplies UBERON:0001567 ! cheek +intersection_of: supplies UBERON:0001582 ! buccinator muscle +relationship: branching_part_of UBERON:0001616 ! maxillary artery +relationship: part_of UBERON:0001616 ! maxillary artery +relationship: supplies UBERON:0001567 ! cheek +relationship: supplies UBERON:0001582 ! buccinator muscle + +[Term] +id: UBERON:0001619 +name: ophthalmic artery +def: "The ophthalmic artery is a branch of the internal carotid artery which supplies branches to supply the eye and other structures in the orbit. It enters the orbit together with the Optic nerve through the Optic foramen/canal. [WP,modified]." [http://en.wikipedia.org/wiki/Ophthalmic_artery] +subset: uberon_slim +synonym: "arteria ophthalmica" RELATED LATIN [http://en.wikipedia.org/wiki/Ophthalmic_artery] +synonym: "opthalmic artery" RELATED [http://en.wikipedia.org/wiki/Ophthalmic_artery] +xref: AAO:0010497 +xref: EHDAA2:0001300 +xref: EHDAA:7363 +xref: EMAPA:17007 +xref: FMA:49868 +xref: GAID:503 +xref: http://linkedlifedata.com/resource/umls/id/C0029078 +xref: http://www.snomedbrowser.com/Codes/Details/181310005 +xref: MA:0002011 +xref: MESH:D009880 +xref: NCIT:C33216 +xref: OpenCyc:Mx4rvcCxpJwpEbGdrcN5Y29ycA +xref: Ophthalmic:artery +xref: UMLS:C0029078 {source="ncithesaurus:Opthalmic_Artery"} +xref: XAO:0000368 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: branching_part_of UBERON:0001532 ! internal carotid artery +relationship: part_of UBERON:0001532 ! internal carotid artery + +[Term] +id: UBERON:0001620 +name: central retinal artery +def: "The central retinal artery (retinal artery) branches off the ophthalmic artery, running inferior to the optic nerve within its dural sheath to the eyeball. [WP,unvetted]." [http://en.wikipedia.org/wiki/Central_retinal_artery] +subset: uberon_slim +synonym: "arteria centralis retinae" RELATED [http://en.wikipedia.org/wiki/Central_retinal_artery] +synonym: "arteria centralis retinae" RELATED LATIN [http://en.wikipedia.org/wiki/Central_retinal_artery] +synonym: "central artery of retina" EXACT [] +synonym: "central artery of the retina" RELATED [http://en.wikipedia.org/wiki/Central_retinal_artery] +synonym: "retinal artery" EXACT [] +synonym: "Zinn's artery" EXACT [] +xref: EMAPA:37113 {source="MA:th"} +xref: FMA:49879 +xref: GAID:508 +xref: http://en.wikipedia.org/wiki/Central_retinal_artery +xref: http://linkedlifedata.com/resource/umls/id/C0035301 +xref: http://www.snomedbrowser.com/Codes/Details/277771001 +xref: MA:0002038 +xref: MESH:D012161 +xref: NCIT:C52997 +xref: UMLS:C0035301 {source="ncithesaurus:Retinal_Artery"} +is_a: UBERON:0003501 ! retina blood vessel +is_a: UBERON:0004573 ! systemic artery +relationship: branching_part_of UBERON:0001619 {source="FMA"} ! ophthalmic artery +relationship: develops_from UBERON:0002270 ! hyaloid artery +relationship: develops_from_part_of UBERON:0002270 {notes="proximal portion", source="ISBN:0781772214"} ! hyaloid artery +relationship: part_of UBERON:0001619 ! ophthalmic artery +relationship: supplies UBERON:0000966 ! retina + +[Term] +id: UBERON:0001621 +name: coronary artery +def: "An artery that supplies the myocardium." [http://en.wikipedia.org/wiki/Coronary_circulation#Coronary_anatomy, http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "coronary arterial tree" EXACT [] +synonym: "coronary vessel" RELATED [ZFA:0005812] +xref: BTO:0000290 +xref: CALOHA:TS-0176 +xref: Coronary_anatomy +xref: EFO:0002551 +xref: EMAPA:19160 +xref: EV:0100383 +xref: FMA:49893 +xref: galen:CoronaryArtery +xref: http://linkedlifedata.com/resource/umls/id/C0205042 +xref: http://www.snomedbrowser.com/Codes/Details/181294004 +xref: MA:0002453 +xref: NCIT:C12843 +xref: OpenCyc:Mx4rvoL56ZwpEbGdrcN5Y29ycA +xref: UMLS:C0205042 {source="ncithesaurus:Coronary_Artery"} +xref: VHOG:0001557 +xref: ZFA:0005812 +is_a: UBERON:0003498 ! heart blood vessel +is_a: UBERON:0004573 ! systemic artery +relationship: supplies UBERON:0002349 ! myocardium + +[Term] +id: UBERON:0001622 +name: lacrimal artery +def: "The lacrimal artery arises close to the optic foramen, and is one of the largest branches derived from the ophthalmic artery: not infrequently it is given off before the artery enters the orbit. It accompanies the lacrimal nerve along the upper border of the Lateral Rectus, supplies the lacrimal gland. [WP,unvetted]." [http://en.wikipedia.org/wiki/Lacrimal_artery] +subset: uberon_slim +synonym: "a. lacrimalis" RELATED LATIN [http://en.wikipedia.org/wiki/Lacrimal_artery] +xref: EMAPA:37094 {source="MA:th"} +xref: FMA:49927 +xref: http://linkedlifedata.com/resource/umls/id/C0226171 +xref: http://www.snomedbrowser.com/Codes/Details/369324002 +xref: Lacrimal:artery +xref: MA:0001988 +xref: NCIT:C52948 +xref: UMLS:C0226171 {source="ncithesaurus:Lacrimal_Artery"} +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0001817 ! lacrimal gland +relationship: branching_part_of UBERON:0001619 {source="FMA"} ! ophthalmic artery +relationship: part_of UBERON:0001619 ! ophthalmic artery +relationship: supplies UBERON:0001817 ! lacrimal gland + +[Term] +id: UBERON:0001623 +name: dorsal nasal artery +def: "The dorsal nasal artery (nasal artery) is an artery of the head. It is one of the two terminal branches of the ophthalmic artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/Dorsal_nasal_artery] +subset: uberon_slim +synonym: "arteria dorsalis nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsal_nasal_artery] +synonym: "dorsal nasal branch of ophthalmic artery" EXACT [FMA:50000] +synonym: "external nasal artery" EXACT [FMA:50000] +xref: EMAPA:35292 +xref: FMA:50000 +xref: http://en.wikipedia.org/wiki/Dorsal_nasal_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226194 +xref: http://www.snomedbrowser.com/Codes/Details/369333000 +xref: MA:0001945 +xref: NCIT:C52983 +xref: UMLS:C0226194 {source="ncithesaurus:Dorsal_Nasal_Artery"} +is_a: UBERON:0015156 {source="FMA"} ! terminal branch of ophthalmic artery + +[Term] +id: UBERON:0001624 +name: anterior cerebral artery +def: "One of a pair of arteries on the brain that supply oxygen to most medial portions of frontal lobes and superior medial parietal lobes. The 2 anterior cerebral arteries arise from the internal carotid artery and are part of the Circle of Willis." [http://en.wikipedia.org/wiki/Anterior_cerebral_artery] +subset: uberon_slim +synonym: "arteria cerebri anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_cerebral_artery] +xref: EHDAA2:0000128 +xref: EHDAA:5296 +xref: EMAPA:17854 +xref: FMA:50028 +xref: GAID:485 +xref: http://en.wikipedia.org/wiki/Anterior_cerebral_artery +xref: http://linkedlifedata.com/resource/umls/id/C0149561 +xref: http://www.snomedbrowser.com/Codes/Details/181309000 +xref: MA:0001915 +xref: MESH:D020771 +xref: NCIT:C12829 +xref: OpenCyc:Mx4rv8biO5wpEbGdrcN5Y29ycA +xref: UMLS:C0149561 {source="ncithesaurus:Anterior_Cerebral_Artery"} +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004449 ! cerebral artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +disjoint_from: UBERON:0001636 {source="lexical"} ! posterior cerebral artery +relationship: branching_part_of UBERON:0001532 {source="FMA", source="WP"} ! internal carotid artery +relationship: part_of UBERON:0001532 ! internal carotid artery + +[Term] +id: UBERON:0001625 +name: right coronary artery +def: "Coronary artery which runs along the right side of the heart and predominantly supplies the mycocardium of the right side of the heart[Wikipedia,modified]" [http://en.wikipedia.org/wiki/Right_coronary_artery, http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "arteria coronaria dextra" RELATED LATIN [http://en.wikipedia.org/wiki/Right_coronary_artery] +synonym: "right coronary arterial tree" RELATED [] +xref: EHDAA2:0004505 +xref: EMAPA:36532 +xref: FMA:50039 +xref: http://en.wikipedia.org/wiki/Right_coronary_artery +xref: http://linkedlifedata.com/resource/umls/id/C1261316 +xref: http://www.snomedbrowser.com/Codes/Details/362037006 +xref: MA:0002455 +xref: NCIT:C12875 +xref: UMLS:C1261316 {source="ncithesaurus:Right_Coronary_Artery"} +is_a: UBERON:0001621 ! coronary artery +relationship: supplies UBERON:0000948 ! heart + +[Term] +id: UBERON:0001626 +name: left coronary artery +def: "Coronary artery which runs along the left side of the heart and predominantly supplies the mycocardium of the left side of the heart[Wikipedia,modified]" [http://en.wikipedia.org/wiki/Left_coronary_artery, http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "arteria coronaria sinistra" RELATED LATIN [http://en.wikipedia.org/wiki/Left_coronary_artery] +synonym: "left coronary arterial tree" RELATED [] +xref: EHDAA2:0004504 +xref: EMAPA:36531 +xref: FMA:50040 +xref: http://en.wikipedia.org/wiki/Left_coronary_artery +xref: http://linkedlifedata.com/resource/umls/id/C1261082 +xref: http://www.snomedbrowser.com/Codes/Details/362034004 +xref: MA:0002454 +xref: NCIT:C12872 +xref: UMLS:C1261082 {source="ncithesaurus:Left_Coronary_Artery"} +is_a: UBERON:0001621 ! coronary artery +relationship: supplies UBERON:0000948 ! heart + +[Term] +id: UBERON:0001627 +name: middle cerebral artery +def: "The middle cerebral artery (MCA) is one of the three major paired arteries that supplies blood to the cerebrum. The MCA arises from the internal carotid and continues into the lateral sulcus where it then branches and projects to many parts of the lateral cerebral cortex. It also supplies blood to the anterior temporal lobes and the insular cortices. The left and right MCAs rise from trifurcations of the internal carotid arteries and thus are connected to the anterior cerebral arteries and the posterior communicating arteries, which connect to the posterior cerebral arteries. The MCAs are not considered a part of the Circle of Willis. [WP,unvetted]." [http://en.wikipedia.org/wiki/Middle_cerebral_artery] +subset: uberon_slim +synonym: "arteria cerebri media" RELATED LATIN [http://en.wikipedia.org/wiki/Middle_cerebral_artery] +synonym: "Sylvian artery" EXACT [] +xref: BTO:0005206 +xref: EHDAA2:0001179 +xref: EHDAA:5298 +xref: EMAPA:18239 +xref: FMA:50079 +xref: GAID:487 +xref: http://en.wikipedia.org/wiki/Middle_cerebral_artery +xref: http://linkedlifedata.com/resource/umls/id/C0149566 +xref: http://www.snomedbrowser.com/Codes/Details/181312002 +xref: MA:0001935 +xref: MESH:D020768 +xref: NCIT:C12830 +xref: OpenCyc:Mx4rvh3qQ5wpEbGdrcN5Y29ycA +xref: UMLS:C0149566 {source="ncithesaurus:Middle_Cerebral_Artery"} +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004449 ! cerebral artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: branching_part_of UBERON:0001532 {source="FMA", source="WP"} ! internal carotid artery +relationship: part_of UBERON:0001532 ! internal carotid artery + +[Term] +id: UBERON:0001628 +name: posterior communicating artery +def: "One of a pair of right-sided and left-sided blood vessels in the circle of Willis. It connects the three cerebral arteries of the same side. Anteriorly, it is one portion of the terminal trifurcation of the internal carotid artery. The anterior cerebral artery and the middle cerebral artery are the other two branches of the trifurcation. Posteriorly, it communicates with the posterior cerebral artery." [http://en.wikipedia.org/wiki/Posterior_communicating_artery] +subset: uberon_slim +subset: vertebrate_core +synonym: "arteria cerebri communicans posterior" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_communicating_artery] +synonym: "caudal communicating segment" EXACT [ZFA:0005001] +synonym: "PCA" RELATED [] +synonym: "PCS" RELATED [] +synonym: "posterior communicating segment of the basilar artery" EXACT [ZFA:0005001] +xref: EHDAA2:0004518 +xref: EHDAA:3352 +xref: EMAPA:18600 +xref: FMA:50084 +xref: http://en.wikipedia.org/wiki/Posterior_communicating_artery +xref: http://linkedlifedata.com/resource/umls/id/C0149559 +xref: http://www.snomedbrowser.com/Codes/Details/181314001 +xref: MA:0002023 +xref: NCIT:C33357 +xref: OpenCyc:Mx4rwDDlqpwpEbGdrcN5Y29ycA +xref: RETIRED_EHDAA2:0001487 +xref: TAO:0005001 +xref: UMLS:C0149559 {source="ncithesaurus:Posterior_Communicating_Artery"} +xref: ZFA:0005001 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0006347 ! communicating artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0006347 ! communicating artery +intersection_of: branching_part_of UBERON:0001532 ! internal carotid artery +intersection_of: part_of UBERON:0003709 ! circle of Willis +disjoint_from: UBERON:0006764 {source="lexical"} ! anterior communicating artery +relationship: branching_part_of UBERON:0001532 {source="FMA", source="ZFA"} ! internal carotid artery +relationship: in_lateral_side_of UBERON:0003709 {source="FMA-abduced-lr"} ! circle of Willis +relationship: part_of UBERON:0001532 ! internal carotid artery +relationship: part_of UBERON:0003709 ! circle of Willis + +[Term] +id: UBERON:0001629 +name: carotid body +def: "A small epithelioid structure consisting of a small cluster of chemoreceptive and supporting cells located near the bifurcation of the common carotid artery that serves as a chemoreceptive organ that senses the pH, carbon dioxide, and oxygen concentrations in the blood and plays a crucial role in their homeostatic control." [MP:0003438] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "carotid glomus" EXACT [http://en.wikipedia.org/wiki/Carotid_body] +synonym: "glomus caroticum" EXACT LATIN [http://en.wikipedia.org/wiki/Carotid_body] +xref: BTO:0000204 +xref: Carotid:body +xref: EMAPA:19211 +xref: FMA:50095 +xref: GAID:813 +xref: http://linkedlifedata.com/resource/umls/id/C0007277 +xref: http://www.snomedbrowser.com/Codes/Details/362586000 +xref: MA:0002463 +xref: MESH:A08.800.550.700.120.600.150 +xref: NCIT:C66852 +xref: UMLS:C0007277 {source="ncithesaurus:Carotid_Body"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0034979 ! nonchromaffin paraganglion +relationship: part_of UBERON:0001530 ! common carotid artery plus branches + +[Term] +id: UBERON:0001630 +name: muscle organ +def: "Organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work[GO]." [GO:0007517] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "muscle" BROAD [ZFA:0005145] +xref: AAO:0011066 +xref: EMAPA:32715 +xref: EMAPA:37474 {source="MA:th"} +xref: EV:0100146 +xref: FMA:5022 +xref: GAID:131 +xref: galen:Muscle +xref: http://www.snomedbrowser.com/Codes/Details/71616004 +xref: MA:0000015 +xref: OpenCyc:Mx4rv2kf-5wpEbGdrcN5Y29ycA +xref: TAO:0005145 +xref: VHOG:0001245 +xref: XAO:0000172 +xref: ZFA:0005145 +is_a: UBERON:0000062 ! organ +is_a: UBERON:0005090 ! muscle structure +intersection_of: UBERON:0000062 ! organ +intersection_of: composed_primarily_of UBERON:0002385 ! muscle tissue +relationship: composed_primarily_of UBERON:0002385 ! muscle tissue +relationship: part_of UBERON:0001015 ! musculature + +[Term] +id: UBERON:0001631 +name: thoracic duct +def: "A major lymphatic vessel that drains lymph from the lower body, left appendage, and left thorax into the junction of the left jugular and subclavian veins." [http://en.wikipedia.org/wiki/Thoracic_duct] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "ductus thoracicus" RELATED LATIN [http://en.wikipedia.org/wiki/Thoracic_duct] +synonym: "trunk of thoracic duct tree" EXACT [] +xref: EHDAA2:0004501 +xref: EMAPA:19310 +xref: FMA:5031 +xref: GAID:1290 +xref: http://linkedlifedata.com/resource/umls/id/C0039979 +xref: http://www.snomedbrowser.com/Codes/Details/362600004 +xref: MA:0002801 +xref: MESH:A15.382.520.869 +xref: NCIT:C33768 +xref: TAO:0005110 +xref: Thoracic:duct +xref: UMLS:C0039979 {source="ncithesaurus:Thoracic_Duct"} +xref: ZFA:0005110 +is_a: UBERON:0001473 ! lymphatic vessel +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: develops_from UBERON:0002065 {source="TAO"} ! posterior cardinal vein +relationship: develops_from UBERON:0006210 {source="EHDAA2"} ! body-wall mesenchyme + +[Term] +id: UBERON:0001632 +name: temporal artery +subset: grouping_class +subset: uberon_slim +xref: EMAPA:37127 {source="MA:th"} +xref: FMA:50438 +xref: GAID:489 +xref: http://linkedlifedata.com/resource/umls/id/C0039482 +xref: MA:0002061 +xref: MESH:D013699 +xref: NCIT:C33741 +xref: Temporal:artery +xref: UMLS:C0039482 {source="ncithesaurus:Temporal_Artery"} +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003496 ! head blood vessel + +[Term] +id: UBERON:0001633 +name: basilar artery +def: "A major artery that supplues the hindbrain and runs along the ventral keel of the hindbrain." [BGEE:ann] +subset: pheno_slim +subset: uberon_slim +subset: unverified_taxonomic_grouping +subset: vertebrate_core +synonym: "BA" RELATED [] +xref: Basilar:artery +xref: EHDAA2:0000163 +xref: EHDAA:5285 +xref: EMAPA:17307 +xref: FMA:50542 +xref: GAID:474 +xref: http://linkedlifedata.com/resource/umls/id/C0004811 +xref: http://www.snomedbrowser.com/Codes/Details/244215004 +xref: MA:0001920 +xref: MESH:D001488 +xref: NCIT:C12676 +xref: OpenCyc:Mx4rwJTtcZwpEbGdrcN5Y29ycA +xref: TAO:0005002 +xref: UMLS:C0004811 {source="ncithesaurus:Basilar_Artery"} +xref: VHOG:0000237 +xref: ZFA:0005002 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0035307 ! branch of vertebral artery +relationship: develops_from UBERON:0001535 {source="EHDAA2"} ! vertebral artery +relationship: supplies UBERON:0002028 ! hindbrain + +[Term] +id: UBERON:0001634 +name: mesencephalic artery +def: "The major artery of the midbrain, which crosses the midbrain medially to meet its partner the mesencephalic vein." [http://www.ncbi.nlm.nih.gov/pubmed/12606281, XAO:0004173] +synonym: "MsA" EXACT ABBREVIATION [ZFA:0001068] +xref: FMA:50570 +xref: TAO:0001068 +xref: XAO:0004173 +xref: ZFA:0001068 +is_a: UBERON:0001637 ! artery +relationship: develops_from UBERON:2001062 {source="ZFA"} ! presumptive mesencephalic artery +relationship: supplies UBERON:0001891 ! midbrain + +[Term] +id: UBERON:0001635 +name: superior cerebellar artery +def: "The superior cerebellar artery (SCA) arises near the termination of the basilar artery. It passes lateralward, immediately below the oculomotor nerve, which separates it from the posterior cerebral artery, winds around the cerebral peduncle, close to the trochlear nerve, and, arriving at the upper surface of the cerebellum, divides into branches which ramify in the pia mater and anastomose with those of the inferior cerebellar arteries. Several branches are given to the pineal body, the anterior medullary velum, and the tela chorioidea of the third ventricle. [WP,unvetted]." [http://en.wikipedia.org/wiki/Superior_cerebellar_artery] +subset: uberon_slim +synonym: "arteria superior cerebelli" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_cerebellar_artery] +xref: EHDAA2:0000681 +xref: EMAPA:19309 +xref: FMA:50573 +xref: http://en.wikipedia.org/wiki/Superior_cerebellar_artery +xref: http://linkedlifedata.com/resource/umls/id/C0149575 +xref: http://www.snomedbrowser.com/Codes/Details/244214000 +xref: MA:0001934 +xref: NCIT:C33669 +xref: UMLS:C0149575 {source="ncithesaurus:Superior_Cerebellar_Artery"} +is_a: UBERON:0003472 ! cerebellar artery +is_a: UBERON:0035489 ! branch of basilar artery +intersection_of: UBERON:0003472 ! cerebellar artery +intersection_of: branching_part_of UBERON:0001633 ! basilar artery +intersection_of: supplies UBERON:0001895 ! metencephalon +intersection_of: supplies UBERON:0001905 ! pineal body +intersection_of: supplies UBERON:0002037 ! cerebellum +relationship: supplies UBERON:0001895 ! metencephalon +relationship: supplies UBERON:0001905 ! pineal body + +[Term] +id: UBERON:0001636 +name: posterior cerebral artery +def: "The posterior cerebral artery (PCA) is one of a pair of blood vessels that supplies oxygenated blood to the posterior aspect of the brain in human anatomy]. It arises near the intersection of the posterior communicating artery and the basilar artery and connects with the ipsilateral middle cerebral artery (MCA) and internal carotid artery via the posterior communicating artery (PCommA). [WP,unvetted]." [http://en.wikipedia.org/wiki/Posterior_cerebral_artery] +subset: uberon_slim +synonym: "arteria cerebri posterior" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_cerebral_artery] +xref: EHDAA2:0000659 +xref: EMAPA:17861 +xref: FMA:50583 +xref: GAID:488 +xref: http://en.wikipedia.org/wiki/Posterior_cerebral_artery +xref: http://linkedlifedata.com/resource/umls/id/C0149576 +xref: http://www.snomedbrowser.com/Codes/Details/181313007 +xref: MA:0002022 +xref: MESH:D020769 +xref: NCIT:C12831 +xref: OpenCyc:Mx4rwO4qIJwpEbGdrcN5Y29ycA +xref: UMLS:C0149576 {source="ncithesaurus:Posterior_Cerebral_Artery"} +is_a: UBERON:0004449 ! cerebral artery +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:0035489 ! branch of basilar artery +intersection_of: UBERON:0004449 ! cerebral artery +intersection_of: branching_part_of UBERON:0001633 ! basilar artery +intersection_of: supplies UBERON:0002021 ! occipital lobe +relationship: in_lateral_side_of UBERON:0001633 {source="FMA-abduced-lr"} ! basilar artery +relationship: supplies UBERON:0002021 ! occipital lobe + +[Term] +id: UBERON:0001637 +name: artery +def: "An epithelial tube or tree of tibes that transports blood away from the heart[modified from AEO definition]." [AEO:JB] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "arterial subtree" EXACT [] +synonym: "arterial system" RELATED [] +synonym: "arterial tree organ part" EXACT [] +synonym: "arterial vessel" RELATED [] +synonym: "arteries" EXACT PLURAL [TAO:0000005] +xref: AAO:0010211 +xref: AEO:0000208 +xref: BTO:0000573 +xref: CALOHA:TS-0054 +xref: EFO:0000814 +xref: EHDAA2:0000143 +xref: EHDAA2:0003253 +xref: EMAPA:35147 +xref: EV:0100026 +xref: FMA:50720 +xref: GAID:468 +xref: galen:Artery +xref: http://en.wikipedia.org/wiki/Artery +xref: http://linkedlifedata.com/resource/umls/id/C0003842 +xref: http://www.snomedbrowser.com/Codes/Details/362877004 +xref: MA:0000064 +xref: MAT:0000034 +xref: MESH:D001158 +xref: MIAA:0000034 +xref: NCIT:C12372 +xref: OpenCyc:Mx4rvVjknZwpEbGdrcN5Y29ycA +xref: TAO:0000005 +xref: UMLS:C0003842 {source="ncithesaurus:Artery"} +xref: VHOG:0001251 +xref: XAO:0000114 +xref: ZFA:0000005 +is_a: UBERON:0003509 ! arterial blood vessel +relationship: channels_from UBERON:0000948 ! heart +relationship: fma_set_term FMA:63812 + +[Term] +id: UBERON:0001638 +name: vein +def: "Any of the tubular branching vessels that carry blood from the capillaries toward the heart." [http://en.wikipedia.org/wiki/Vein] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "vascular element" RELATED [EMAPA:th] +synonym: "vena" RELATED LATIN [http://en.wikipedia.org/wiki/Vein] +synonym: "venae" RELATED PLURAL [VHOG:0001743] +synonym: "venous subtree" BROAD [] +synonym: "venous tree organ part" EXACT [] +synonym: "venous vessel" BROAD [] +xref: AAO:0010212 +xref: AEO:0000209 +xref: BTO:0000234 +xref: CALOHA:TS-1108 +xref: EFO:0000816 +xref: EHDAA2:0003254 +xref: EMAPA:35906 +xref: EV:0100031 +xref: FMA:50723 +xref: GAID:492 +xref: galen:Vein +xref: http://en.wikipedia.org/wiki/Vein +xref: http://linkedlifedata.com/resource/umls/id/C0042449 +xref: http://www.snomedbrowser.com/Codes/Details/181367001 +xref: MA:0000067 +xref: MAT:0000037 +xref: MESH:D014680 +xref: MIAA:0000037 +xref: NCIT:C12814 +xref: OpenCyc:Mx4rvVjkWpwpEbGdrcN5Y29ycA +xref: TAO:0000082 +xref: UMLS:C0042449 {source="ncithesaurus:Vein"} +xref: VHOG:0001743 +xref: XAO:0000115 +xref: ZFA:0000082 +is_a: UBERON:0003920 ! venous blood vessel +intersection_of: UBERON:0003920 ! venous blood vessel +intersection_of: channel_for UBERON:0013756 ! venous blood +relationship: channel_for UBERON:0013756 ! venous blood +relationship: channels_from UBERON:0001982 ! capillary +relationship: fma_set_term FMA:63814 + +[Term] +id: UBERON:0001639 +name: hepatic portal vein +def: "A portal vein that transports nutrients from the digestive tract to the liver[Kardong]." [http://en.wikipedia.org/wiki/Hepatic_portal_vein, http://sourceforge.net/tracker/?func=detail&aid=3091300&group_id=76834&atid=1205376, ISBN:0073040584] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "hepatic portal tree" EXACT [] +synonym: "HPV" RELATED [] +synonym: "liver portal vein" EXACT [OBOL:automatic] +synonym: "portal vein" RELATED INCONSISTENT [] +synonym: "portal vein of liver" EXACT [OBOL:automatic] +synonym: "primary hepatic portal vein" RELATED [ZFA:0005090] +synonym: "primary hepatic portal veins" RELATED [] +synonym: "vena portae hepatis" RELATED LATIN [http://en.wikipedia.org/wiki/Hepatic_portal_vein] +xref: AAO:0010214 +xref: FMA:50735 +xref: http://en.wikipedia.org/wiki/Hepatic_portal_vein +xref: MA:0002132 +xref: TAO:0005090 +xref: VHOG:0000642 +xref: ZFA:0005090 +is_a: UBERON:0002017 {source="MA"} ! portal vein +relationship: channels_into UBERON:0002107 ! liver +relationship: part_of UBERON:0010194 ! hepatic portal system + +[Term] +id: UBERON:0001640 +name: celiac artery +def: "The first major branch of the abdominal aorta." [http://en.wikipedia.org/wiki/Celiac_artery] +comment: dorsal aorta in Kardong +subset: pheno_slim +subset: uberon_slim +synonym: "arteria coeliaca" RELATED LATIN [http://en.wikipedia.org/wiki/Celiac_artery] +synonym: "arteria cÅ“liaca" RELATED LATIN [http://en.wikipedia.org/wiki/Celiac_artery] +synonym: "celiac tree" EXACT [] +synonym: "celiac trunk" RELATED [http://en.wikipedia.org/wiki/Celiac_artery] +synonym: "coeliac artery" EXACT [http://en.wikipedia.org/wiki/Celiac_artery] +synonym: "coeliac axis" RELATED [http://en.wikipedia.org/wiki/Celiac_artery] +synonym: "coeliac trunck" RELATED [http://en.wikipedia.org/wiki/Celiac_artery] +synonym: "coeliac trunk" RELATED [http://en.wikipedia.org/wiki/Celiac_artery] +synonym: "truncus coeliacus" RELATED LATIN [http://en.wikipedia.org/wiki/Celiac_artery] +synonym: "truncus coeliacus" RELATED [http://en.wikipedia.org/wiki/Celiac_artery] +synonym: "truncus cÅ“liacus" RELATED LATIN [http://en.wikipedia.org/wiki/Celiac_artery] +xref: Celiac:artery +xref: EHDAA2:0004519 +xref: EMAPA:35202 +xref: FMA:50737 +xref: GAID:483 +xref: http://linkedlifedata.com/resource/umls/id/C0007569 +xref: http://www.snomedbrowser.com/Codes/Details/181340007 +xref: MA:0001931 +xref: MESH:D002445 +xref: NCIT:C52846 +xref: UMLS:C0007569 {source="ncithesaurus:Coeliac_Artery"} +is_a: UBERON:0012254 ! abdominal aorta artery +relationship: indirectly_supplies UBERON:0000160 {source="ISBN:0073040584"} ! intestine +relationship: indirectly_supplies UBERON:0000945 {source="ISBN:0073040584"} ! stomach +relationship: indirectly_supplies UBERON:0002106 {source="ISBN:0073040584"} ! spleen +relationship: indirectly_supplies UBERON:0002107 {source="ISBN:0073040584"} ! liver + +[Term] +id: UBERON:0001641 +name: transverse sinus +def: "one of the dural venous sinuses and drains the superior sagittal sinus the occipital sinus and the straight sinus, and empties into the sigmoid sinus which in turn reaches the jugular bulb." [http://radiopaedia.org/articles/transverse-sinus] +subset: uberon_slim +synonym: "groove for right and left transverse sinuses" RELATED [http://en.wikipedia.org/wiki/Transverse_sinuses] +synonym: "lateral sinus" RELATED [FMA:50763] +synonym: "sinus transversus" RELATED [http://en.wikipedia.org/wiki/Transverse_sinuses] +synonym: "sinus transversus durae matris" EXACT LATIN [http://en.wikipedia.org/wiki/Transverse_sinuses] +synonym: "transverse sinus" RELATED [http://en.wikipedia.org/wiki/Transverse_sinuses] +synonym: "transverse sinus vein" RELATED [http://en.wikipedia.org/wiki/Transverse_sinuses] +xref: EMAPA:18637 +xref: FMA:50763 +xref: http://www.snomedbrowser.com/Codes/Details/279262004 +xref: MA:0001868 +xref: ncithesaurus:Transverse_Sinus +xref: OpenCyc:Mx4rwDb62ZwpEbGdrcN5Y29ycA +xref: Transverse:sinuses +is_a: UBERON:0003502 ! neck blood vessel +is_a: UBERON:0017635 ! paired venous dural sinus +intersection_of: UBERON:0017635 ! paired venous dural sinus +intersection_of: tributary_of UBERON:0005475 ! sigmoid sinus +relationship: part_of UBERON:0005475 ! sigmoid sinus +relationship: tributary_of UBERON:0005475 ! sigmoid sinus + +[Term] +id: UBERON:0001642 +name: superior sagittal sinus +def: "The superior sagittal sinus (also known as the superior longitudinal sinus), within a human cranium, is an area above/behind the brain, which allows blood veins to span the area, from the top of the head towards the back. It is believed that the cerebrospinal fluid drains through the arachnoid granulations into the dural venous sinuses of the superior sagittal sinus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Superior_sagittal_sinus] +subset: uberon_slim +synonym: "sinus sagittalis superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_sagittal_sinus] +xref: EMAPA:18636 +xref: FMA:50767 +xref: http://en.wikipedia.org/wiki/Superior_sagittal_sinus +xref: http://linkedlifedata.com/resource/umls/id/C0226859 +xref: http://www.snomedbrowser.com/Codes/Details/362075006 +xref: MA:0001867 +xref: NCIT:C12515 +xref: OpenCyc:Mx4rv9naEJwpEbGdrcN5Y29ycA +xref: UMLS:C0226859 {source="ncithesaurus:Superior_Sagittal_Sinus"} +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015704 ! sagittal sinus +relationship: develops_from UBERON:0009968 {source="cjm"} ! primitive superior sagittal sinus + +[Term] +id: UBERON:0001643 +name: oculomotor nerve +def: "Cranial nerve which connects the midbrain to the extra-ocular and intra-ocular muscles." [http://en.wikipedia.org/wiki/Oculomotor_nerve, ISBN:0471209627] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "3n" BROAD ABBREVIATION [BIRNLEX:1646, NIFSTD:NeuroNames_abbrevSource] +synonym: "CN-III" RELATED [] +synonym: "cranial nerve III" RELATED [] +synonym: "nerve III" RELATED [NeuroNames:488] +synonym: "nervus oculomotorius" EXACT LATIN [http://en.wikipedia.org/wiki/Oculomotor_nerve] +synonym: "nervus oculomotorius [III]" EXACT LATIN [FMA:50864, FMA:TA] +synonym: "occulomotor" RELATED [] +synonym: "oculomotor III" EXACT [EHDAA2:0001284] +synonym: "oculomotor III nerve" EXACT [] +synonym: "oculomotor nerve [III]" EXACT [] +synonym: "oculomotor nerve or its root" RELATED [BAMS:3n] +synonym: "oculomotor nerve tree" EXACT [] +synonym: "third cranial nerve" EXACT [] +xref: AAO:0010468 +xref: BAMS:3n +xref: BAMS:IIIn +xref: BIRNLEX:1646 +xref: BM:MB-IIIN +xref: EHDAA2:0001284 +xref: EHDAA:3736 +xref: EMAPA:17574 +xref: FMA:50864 +xref: GAID:829 +xref: HBA:9316 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=488 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=488 {source="BIRNLEX:1646"} +xref: http://linkedlifedata.com/resource/umls/id/C0028864 +xref: http://www.snomedbrowser.com/Codes/Details/362456009 +xref: MA:0001095 +xref: MBA:832 +xref: MESH:D009802 +xref: NCIT:C12758 +xref: Oculomotor:nerve +xref: OpenCyc:Mx4rvj7pZpwpEbGdrcN5Y29ycA +xref: TAO:0000405 +xref: UMLS:C0028864 {source="BIRNLEX:1646"} +xref: UMLS:C0028864 {source="ncithesaurus:Oculomotor_Nerve"} +xref: VHOG:0000692 +xref: XAO:0003090 +xref: ZFA:0000405 +is_a: UBERON:0001785 ! cranial nerve +intersection_of: UBERON:0001785 ! cranial nerve +intersection_of: extends_fibers_into UBERON:0001715 ! oculomotor nuclear complex +intersection_of: innervates UBERON:0001601 ! extra-ocular muscle +intersection_of: innervates UBERON:0011222 ! intra-ocular muscle +relationship: develops_from UBERON:0010285 {source="Wikipedia"} ! midbrain basal plate +relationship: extends_fibers_into UBERON:0001715 ! oculomotor nuclear complex +relationship: innervates UBERON:0001601 ! extra-ocular muscle +relationship: innervates UBERON:0011222 ! intra-ocular muscle + +[Term] +id: UBERON:0001644 +name: trochlear nerve +def: "A cranial nerve that runs to the eye muscles." [http://en.wikipedia.org/wiki/Trochlear_nerve, ISBN:0471209627] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "4n" BROAD ABBREVIATION [BIRNLEX:1654, NIFSTD:NeuroNames_abbrevSource] +synonym: "CN-IV" RELATED [] +synonym: "cranial nerve IV" EXACT [VHOG:0000705, ZFA:0000600] +synonym: "fourth cranial nerve" EXACT [] +synonym: "nerve IV" RELATED [NeuroNames:466] +synonym: "nervus trochlearis" RELATED LATIN [http://en.wikipedia.org/wiki/Trochlear_nerve] +synonym: "nervus trochlearis [IV]" EXACT LATIN [FMA:50865, FMA:TA] +synonym: "pathetic nerve" RELATED [VHOG:0000705] +synonym: "superior oblique nerve" EXACT [] +synonym: "trochlear" RELATED [VHOG:0000705] +synonym: "trochlear IV nerve" EXACT [MA:0001105] +synonym: "trochlear nerve [IV]" EXACT [] +synonym: "trochlear nerve or its root" RELATED [BAMS:4n] +synonym: "trochlear nerve tree" EXACT [] +synonym: "trochlear nerve/root" RELATED [BAMS:4n] +xref: AAO:0010469 +xref: BAMS:4n +xref: BAMS:IVn +xref: BAMS:nIV +xref: BIRNLEX:1654 +xref: BM:IVN +xref: EHDAA2:0002090 +xref: EMAPA:18218 +xref: FMA:50865 +xref: GAID:838 +xref: HBA:9319 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=466 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=466 {source="BIRNLEX:1654"} +xref: http://linkedlifedata.com/resource/umls/id/C0041159 +xref: http://www.snomedbrowser.com/Codes/Details/180939009 +xref: MA:0001105 +xref: MBA:911 +xref: MESH:D014321 +xref: NCIT:C12808 +xref: OpenCyc:Mx4rvyeBQ5wpEbGdrcN5Y29ycA +xref: TAO:0000600 +xref: Trochlear:nerve +xref: UMLS:C0041159 {source="BIRNLEX:1654"} +xref: UMLS:C0041159 {source="ncithesaurus:Trochlear_Nerve"} +xref: VHOG:0000705 +xref: XAO:0003091 +xref: ZFA:0000600 +is_a: UBERON:0001785 ! cranial nerve +intersection_of: UBERON:0001785 ! cranial nerve +intersection_of: extends_fibers_into UBERON:0002722 ! trochlear nucleus +intersection_of: innervates UBERON:0006321 ! superior oblique extraocular muscle +relationship: extends_fibers_into UBERON:0002722 ! trochlear nucleus +relationship: innervates UBERON:0006321 ! superior oblique extraocular muscle + +[Term] +id: UBERON:0001645 +name: trigeminal nerve +def: "Cranial nerve that has three branches - the ophthalmic (supplying the skin of the nose and upper jaw), the maxillary and the mandibular (supplying the lower jaw)." [http://en.wikipedia.org/wiki/Trigeminal_nerve, ISBN:0471209627] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "5n" BROAD ABBREVIATION [BIRNLEX:869, NIFSTD:NeuroNames_abbrevSource] +synonym: "CN-V" RELATED [] +synonym: "cranial nerve V" RELATED [] +synonym: "fifth cranial nerve" EXACT [] +synonym: "nerve V" RELATED [NeuroNames:549] +synonym: "nervus trigeminus" EXACT LATIN [http://en.wikipedia.org/wiki/Trigeminal_nerve] +synonym: "nervus trigeminus" RELATED [BTO:0001072] +synonym: "nervus trigeminus [v]" EXACT LATIN [FMA:50866, FMA:TA] +synonym: "trigeminal nerve [V]" EXACT [] +synonym: "trigeminal nerve tree" EXACT [] +synonym: "trigeminal V" EXACT [EHDAA2:0002084] +synonym: "trigeminal v nerve" EXACT [] +synonym: "trigeminus" RELATED [BTO:0001072] +xref: AAO:0010470 +xref: BAMS:5n +xref: BAMS:nV +xref: BAMS:Vn +xref: BIRNLEX:869 +xref: BM:VN +xref: BTO:0001072 +xref: EFO:0001402 +xref: EHDAA2:0002084 +xref: EHDAA:3738 +xref: EMAPA:17576 +xref: FMA:50866 +xref: GAID:726 +xref: HBA:9322 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=549 {source="BIRNLEX:869"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=549 +xref: http://linkedlifedata.com/resource/umls/id/C0040996 +xref: http://www.snomedbrowser.com/Codes/Details/362459002 +xref: MA:0001100 +xref: MBA:901 +xref: MESH:D014276 +xref: MFMO:0000093 +xref: NCIT:C12806 +xref: OpenCyc:Mx4rwMF8CJwpEbGdrcN5Y29ycA +xref: TAO:0000697 +xref: Trigeminal:nerve +xref: UMLS:C0040996 {source="BIRNLEX:869"} +xref: UMLS:C0040996 {source="ncithesaurus:Trigeminal_Nerve"} +xref: VHOG:0000704 +xref: XAO:0003092 +xref: ZFA:0000697 +is_a: UBERON:0001785 ! cranial nerve +intersection_of: UBERON:0001785 ! cranial nerve +intersection_of: extends_fibers_into UBERON:0002925 ! trigeminal nucleus +intersection_of: innervates UBERON:0000165 ! mouth +intersection_of: innervates UBERON:0011648 ! jaw muscle +intersection_of: innervates UBERON:1000021 ! skin of face +relationship: extends_fibers_into UBERON:0002925 ! trigeminal nucleus +relationship: has_developmental_contribution_from UBERON:0005239 {source="Wikipedia"} ! basal plate metencephalon +relationship: innervates UBERON:0000165 ! mouth +relationship: innervates UBERON:0011648 ! jaw muscle +relationship: innervates UBERON:1000021 ! skin of face + +[Term] +id: UBERON:0001646 +name: abducens nerve +def: "Cranial nerve that runs to the eye muscles." [http://en.wikipedia.org/wiki/Abducens_nerve, ISBN:0471209627] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "6n" BROAD ABBREVIATION [BIRNLEX:876, NIFSTD:NeuroNames_abbrevSource] +synonym: "abducens nerve [VI]" EXACT [] +synonym: "abducens nerve tree" EXACT [] +synonym: "abducens nerve/root" RELATED [BAMS:6n] +synonym: "abducens VI nerve" EXACT [] +synonym: "abducent nerve" RELATED [] +synonym: "abducent nerve [VI]" EXACT [] +synonym: "abducents VI nerve" RELATED [EMAPA:18216] +synonym: "CN-VI" RELATED [] +synonym: "cranial nerve VI" RELATED [] +synonym: "lateral rectus nerve" EXACT [] +synonym: "nerve VI" RELATED [NeuroNames:550] +synonym: "nervus abducens" EXACT [] +synonym: "nervus abducens" RELATED LATIN [http://en.wikipedia.org/wiki/Abducens_nerve] +synonym: "nervus abducens [VI]" EXACT LATIN [FMA:50867, FMA:TA] +synonym: "sixth cranial nerve" EXACT [] +xref: AAO:0010471 +xref: Abducens:nerve +xref: BAMS:VIn +xref: BIRNLEX:876 +xref: BM:Pons-VIN +xref: EHDAA2:0000103 +xref: EMAPA:18216 +xref: FMA:50867 +xref: GAID:824 +xref: HBA:9325 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=550 {source="BIRNLEX:876"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=550 +xref: http://linkedlifedata.com/resource/umls/id/C0000741 +xref: http://www.snomedbrowser.com/Codes/Details/180941005 +xref: MA:0001087 +xref: MBA:710 +xref: MESH:D000010 +xref: NCIT:C12665 +xref: OpenCyc:Mx4rvjl41ZwpEbGdrcN5Y29ycA +xref: TAO:0000310 +xref: UMLS:C0000741 {source="ncithesaurus:Abducens_Nerve"} +xref: UMLS:C0000741 {source="BIRNLEX:876"} +xref: VHOG:0000697 +xref: XAO:0003093 +xref: ZFA:0000310 +is_a: UBERON:0001785 ! cranial nerve +intersection_of: UBERON:0001785 ! cranial nerve +intersection_of: extends_fibers_into UBERON:0002682 ! abducens nucleus +intersection_of: innervates UBERON:0001601 ! extra-ocular muscle +relationship: develops_from UBERON:0005239 {source="Wikipedia"} ! basal plate metencephalon +relationship: extends_fibers_into UBERON:0002682 ! abducens nucleus +relationship: innervates UBERON:0001601 ! extra-ocular muscle + +[Term] +id: UBERON:0001647 +name: facial nerve +def: "Cranial nerve that branches into the supraorbital (supplying the skin of the eye region and the lateral line organs here), the palatine (to the roof of the buccal cavity), and the hyomandibular (dividing into the jugular and mental branches)." [http://en.wikipedia.org/wiki/Facial_nerve, ISBN:0471209627] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "7n" BROAD ABBREVIATION [BIRNLEX:827, NIFSTD:NeuroNames_abbrevSource] +synonym: "branchiomeric cranial nerve" EXACT [] +synonym: "CN-VII" RELATED [] +synonym: "cranial nerve VII" RELATED [] +synonym: "face nerve" EXACT [OBOL:automatic] +synonym: "facial nerve [VII]" EXACT [] +synonym: "facial nerve or its root" RELATED [BAMS:7n] +synonym: "facial nerve tree" EXACT [] +synonym: "facial nerve/root" RELATED [BAMS:7n] +synonym: "facial VII" EXACT [EHDAA2:0000489] +synonym: "facial VII nerve" EXACT [] +synonym: "nerve of face" EXACT [OBOL:automatic] +synonym: "nerve VII" RELATED [NeuroNames:551] +synonym: "nervus facialis" EXACT [ZFA:0000664] +synonym: "nervus facialis" RELATED LATIN [http://en.wikipedia.org/wiki/Facial_nerve] +synonym: "nervus facialis [vii]" EXACT LATIN [FMA:50868, FMA:TA] +synonym: "seventh cranial nerve" EXACT [] +xref: AAO:0010472 +xref: BAMS:7n +xref: BAMS:nVII +xref: BAMS:VIIn +xref: BAMS:Viin +xref: BIRNLEX:827 +xref: BM:Pons-VIIN +xref: EHDAA2:0000489 +xref: EHDAA:3729 +xref: EMAPA:17796 +xref: Facial:nerve +xref: FMA:50868 +xref: GAID:719 +xref: HBA:9328 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=551 {source="BIRNLEX:827"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=551 +xref: http://linkedlifedata.com/resource/umls/id/C0015462 +xref: http://www.snomedbrowser.com/Codes/Details/362460007 +xref: MA:0001091 +xref: MBA:798 +xref: MESH:D005154 +xref: NCIT:C12714 +xref: OpenCyc:Mx4rvthgEpwpEbGdrcN5Y29ycA +xref: TAO:0000664 +xref: UMLS:C0015462 {source="ncithesaurus:Facial_Nerve"} +xref: UMLS:C0015462 {source="BIRNLEX:827"} +xref: VHOG:0000706 +xref: XAO:0003094 +xref: ZFA:0000664 +is_a: UBERON:0001785 ! cranial nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: extends_fibers_into UBERON:0000127 ! facial nucleus +intersection_of: innervates UBERON:0001577 ! facial muscle +relationship: extends_fibers_into UBERON:0000127 ! facial nucleus +relationship: has_developmental_contribution_from UBERON:0003066 {source="Wikipedia"} ! pharyngeal arch 2 +relationship: has_developmental_contribution_from UBERON:0005239 {source="Wikipedia"} ! basal plate metencephalon +relationship: innervates UBERON:0001577 ! facial muscle +relationship: part_of UBERON:0001033 {source="ZFA"} ! gustatory system + +[Term] +id: UBERON:0001648 +name: vestibulocochlear nerve +def: "Cranial nerve that transmits sound and equilibrium (balance) information from the inner ear to the brain." [http://en.wikipedia.org/wiki/Vestibulocochlear_nerve, ISBN:0471209627] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "8n" BROAD ABBREVIATION [BIRNLEX:890, NIFSTD:NeuroNames_abbrevSource] +synonym: "acoustic nerve" EXACT [FMA:50869] +synonym: "acoustic nerve (Crosby)" EXACT [] +synonym: "acoustic VIII nerve" EXACT [] +synonym: "CN-VIII" EXACT [] +synonym: "cochlear-vestibular nerve" EXACT [] +synonym: "cochleovestibular nerve" EXACT [] +synonym: "cranial nerve VIII" EXACT [] +synonym: "eighth cranial nerve" EXACT [] +synonym: "nervus octavus" RELATED LATIN [NeuroNames:553] +synonym: "nervus statoacusticus" RELATED LATIN [NeuroNames:553] +synonym: "nervus vestibulocochlearis" RELATED [BTO:0003490] +synonym: "nervus vestibulocochlearis [viii]" EXACT LATIN [FMA:50869, FMA:TA] +synonym: "octaval nerve" RELATED [] +synonym: "stato-acoustic nerve" EXACT [] +synonym: "statoacoustic nerve" RELATED [] +synonym: "vestibulocochlear nerve [VIII]" EXACT [] +synonym: "vestibulocochlear nerve tree" EXACT [] +synonym: "vestibulocochlear VIII nerve" EXACT [] +synonym: "VIII nerve" EXACT [] +synonym: "VIIIth cranial nerve" EXACT [] +xref: AAO:0010473 +xref: BAMS:8n +xref: BAMS:nVIII +xref: BAMS:VIIIn +xref: BIRNLEX:890 +xref: BTO:0003490 +xref: EHDAA2:0002194 +xref: EMAPA:17801 +xref: FMA:50869 +xref: GAID:839 +xref: HBA:9331 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=553 {source="BIRNLEX:890"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=553 +xref: http://linkedlifedata.com/resource/umls/id/C0001162 +xref: http://linkedlifedata.com/resource/umls/id/C1278835 +xref: http://www.snomedbrowser.com/Codes/Details/180945001 +xref: MA:0001109 +xref: MBA:933 +xref: MESH:D000159 +xref: NCIT:C12996 +xref: OpenCyc:Mx4rvVjMFZwpEbGdrcN5Y29ycA +xref: TAO:0000247 +xref: UMLS:C0001162 {source="BIRNLEX:890"} +xref: UMLS:C0001162 {source="ncithesaurus:Vestibulocochlear_Nerve"} +xref: UMLS:C1278835 {source="BIRNLEX:890"} +xref: Vestibulocochlear:nerve +xref: VHOG:0000695 +xref: XAO:0003095 +xref: ZFA:0000247 +is_a: UBERON:0001785 ! cranial nerve +intersection_of: UBERON:0001785 ! cranial nerve +intersection_of: extends_fibers_into UBERON:0001720 ! cochlear nucleus +intersection_of: innervates UBERON:0001844 ! cochlea +relationship: develops_from UBERON:0003069 {source="ISBN:0471888893"} ! otic placode +relationship: extends_fibers_into UBERON:0001720 ! cochlear nucleus +relationship: innervates UBERON:0001844 ! cochlea +relationship: part_of UBERON:0002105 ! vestibulo-auditory system + +[Term] +id: UBERON:0001649 +name: glossopharyngeal nerve +def: "Cranial nerve that branches into the ramus communicans (to the skin), the pretrematic (to the walls of the pharynx and mouth, viscero-sensory fibers), and the larval post-trematic branch (lost in the adult)." [http://en.wikipedia.org/wiki/Glossopharyngeal_nerve, ISBN:0471209627] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "9n" BROAD ABBREVIATION [BIRNLEX:899, NIFSTD:NeuroNames_abbrevSource] +synonym: "CN-IX" RELATED ABBREVIATION [] +synonym: "cranial nerve IX" RELATED [] +synonym: "glossopharyngeal IX" EXACT [EHDAA2:0000709] +synonym: "glossopharyngeal IX nerve" EXACT [] +synonym: "glossopharyngeal nerve [IX]" EXACT [] +synonym: "glossopharyngeal nerve tree" EXACT [] +synonym: "nerve IX" RELATED [NeuroNames:701] +synonym: "nervus glossopharyngeus" EXACT [ZFA:0000668] +synonym: "nervus glossopharyngeus" RELATED LATIN [http://en.wikipedia.org/wiki/Glossopharyngeal_nerve] +synonym: "nervus glossopharyngeus [ix]" EXACT LATIN [FMA:50870, FMA:TA] +synonym: "ninth cranial nerve" EXACT [] +xref: AAO:0010474 +xref: BAMS:9n +xref: BAMS:IXn +xref: BIRNLEX:899 +xref: BTO:0004979 +xref: EHDAA2:0000709 +xref: EHDAA:3733 +xref: EMAPA:17268 +xref: FMA:50870 +xref: GAID:827 +xref: Glossopharyngeal:nerve +xref: HBA:9334 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=701 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=701 {source="BIRNLEX:899"} +xref: http://linkedlifedata.com/resource/umls/id/C0017679 +xref: http://linkedlifedata.com/resource/umls/id/C1305752 +xref: http://www.snomedbrowser.com/Codes/Details/362465002 +xref: MA:0001093 +xref: MBA:808 +xref: MESH:D005930 +xref: NCIT:C12723 +xref: OpenCyc:Mx4rwIr5X5wpEbGdrcN5Y29ycA +xref: TAO:0000668 +xref: UMLS:C0017679 {source="BIRNLEX:899"} +xref: UMLS:C0017679 {source="ncithesaurus:Glossopharyngeal_Nerve"} +xref: UMLS:C1305752 {source="BIRNLEX:899"} +xref: VHOG:0000701 +xref: XAO:0003096 +xref: ZFA:0000668 +is_a: UBERON:0001785 ! cranial nerve +relationship: extends_fibers_into UBERON:0001896 ! medulla oblongata +relationship: has_developmental_contribution_from UBERON:0005239 {notes="motor", source="Wikipedia"} ! basal plate metencephalon +relationship: innervates UBERON:0001727 ! taste bud +relationship: innervates UBERON:0006562 ! pharynx +relationship: part_of UBERON:0001033 ! gustatory system + +[Term] +id: UBERON:0001650 +name: hypoglossal nerve +def: "Cranial nerve that innervates the muscles of the tongue." [http://orcid.org/0000-0002-6601-2165, ISBN:080184780X, VHOG:0000693] +subset: pheno_slim +subset: uberon_slim +synonym: "12n" BROAD ABBREVIATION [BIRNLEX:820, NIFSTD:NeuroNames_abbrevSource] +synonym: "CN-XII" RELATED [VHOG:0000693] +synonym: "cranial nerve XII" EXACT [BIRNLEX:820] +synonym: "hypoglossal nerve [XII]" EXACT [] +synonym: "hypoglossal nerve tree" EXACT [] +synonym: "hypoglossal nerve/ root" RELATED [BAMS:12n] +synonym: "hypoglossal XII" EXACT [EHDAA2:0000798] +synonym: "hypoglossal XII nerve" EXACT [] +synonym: "nerve XII" RELATED [NeuroNames:704] +synonym: "nervi hypoglossalis" RELATED LATIN [NeuroNames:704] +synonym: "nervus hypoglossus" RELATED LATIN [http://en.wikipedia.org/wiki/Hypoglossal_nerve] +synonym: "nervus hypoglossus [xii]" EXACT LATIN [FMA:50871, FMA:TA] +synonym: "twelfth cranial nerve" EXACT [] +xref: AAO:0010477 +xref: BAMS:12n +xref: BAMS:nXII +xref: BAMS:XIIn +xref: BIRNLEX:820 +xref: BTO:0003386 +xref: EHDAA2:0000798 +xref: EHDAA:2859 +xref: EMAPA:17269 +xref: FMA:50871 +xref: GAID:828 +xref: HBA:9343 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=704 {source="BIRNLEX:820"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=704 +xref: http://linkedlifedata.com/resource/umls/id/C0020614 +xref: http://www.snomedbrowser.com/Codes/Details/362471008 +xref: Hypoglossal:nerve +xref: MA:0001094 +xref: MBA:813 +xref: MESH:D007002 +xref: NCIT:C12732 +xref: OpenCyc:Mx4rv9eWA5wpEbGdrcN5Y29ycA +xref: UMLS:C0020614 {source="BIRNLEX:820"} +xref: UMLS:C0020614 {source="ncithesaurus:Hypoglossal_Nerve"} +xref: VHOG:0000693 +xref: XAO:0004215 +is_a: UBERON:0001785 ! cranial nerve +intersection_of: UBERON:0001785 ! cranial nerve +intersection_of: extends_fibers_into UBERON:0002871 ! hypoglossal nucleus +intersection_of: innervates UBERON:0000378 ! tongue muscle +relationship: dubious_for_taxon NCBITaxon:8292 +relationship: extends_fibers_into UBERON:0002871 ! hypoglossal nucleus +relationship: innervates UBERON:0001571 ! genioglossus muscle +relationship: innervates UBERON:0001572 ! hyoglossus muscle + +[Term] +id: UBERON:0001651 +name: right pulmonary artery +def: "The pulmonary artery that supplies the right lung." [UBERON:cjm] +subset: uberon_slim +synonym: "arteria pulmonalis dextra" RELATED LATIN [http://en.wikipedia.org/wiki/Right_pulmonary_artery] +synonym: "right main pulmonary artery" EXACT [] +synonym: "right pulmonary arterial tree" EXACT [] +xref: EMAPA:37378 {source="MA:th"} +xref: FMA:50872 +xref: galen:RightPulmonaryArtery +xref: http://en.wikipedia.org/wiki/Right_pulmonary_artery +xref: http://linkedlifedata.com/resource/umls/id/C0923924 +xref: http://www.snomedbrowser.com/Codes/Details/244235003 +xref: MA:0002500 +xref: NCIT:C33489 +xref: UMLS:C0923924 {source="ncithesaurus:Right_Pulmonary_Artery"} +is_a: UBERON:0001637 ! artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0002167 ! right lung +relationship: supplies UBERON:0002167 ! right lung + +[Term] +id: UBERON:0001652 +name: left pulmonary artery +def: "The pulmonary artery that supplies the left lung." [UBERON:cjm] +subset: uberon_slim +synonym: "arteria pulmonalis sinistra" RELATED LATIN [http://en.wikipedia.org/wiki/Left_pulmonary_artery] +synonym: "left main pulmonary artery" EXACT [] +synonym: "left pulmonary arterial tree" EXACT [] +xref: EMAPA:37097 {source="MA:th"} +xref: FMA:50873 +xref: galen:LeftPulmonaryArtery +xref: http://en.wikipedia.org/wiki/Left_pulmonary_artery +xref: http://linkedlifedata.com/resource/umls/id/C0923925 +xref: http://www.snomedbrowser.com/Codes/Details/244234004 +xref: MA:0002032 +xref: NCIT:C32971 +xref: UMLS:C0923925 {source="ncithesaurus:Left_Pulmonary_Artery"} +is_a: UBERON:0001637 ! artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0002168 ! left lung +relationship: supplies UBERON:0002168 ! left lung + +[Term] +id: UBERON:0001653 +name: facial vein +def: "The anterior facial vein (facial vein) commences at the side of the root of the nose, and is a direct continuation of the angular vein where it also receives a small nasal branch. It lies behind the facial artery and follows a less tortuous course. It receives blood from the external palatine vein before it either joins the anterior branch of the retromandibular vein to form the common facial vein, or drains directly into the internal jugular vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Facial_vein] +subset: uberon_slim +synonym: "anterior facial vein" RELATED INCONSISTENT [http://en.wikipedia.org/wiki/Facial_vein] +synonym: "face vein" EXACT [OBOL:automatic] +synonym: "vein of face" EXACT [OBOL:automatic] +synonym: "vena facialis anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Facial_vein] +xref: AAO:0010513 +xref: EMAPA:19220 +xref: Facial:vein +xref: FMA:50874 +xref: http://linkedlifedata.com/resource/umls/id/C0226532 +xref: http://www.snomedbrowser.com/Codes/Details/181374006 +xref: MA:0002115 +xref: NCIT:C32579 +xref: OpenCyc:Mx4rvziz3JwpEbGdrcN5Y29ycA +xref: UMLS:C0226532 {source="ncithesaurus:Facial_Vein"} +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0003502 ! neck blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +relationship: part_of UBERON:0001456 ! face +relationship: part_of UBERON:0001586 ! internal jugular vein +relationship: tributary_of UBERON:0001586 {source="FMA"} ! internal jugular vein + +[Term] +id: UBERON:0001654 +name: supraorbital vein +def: "The supraorbital vein begins on the forehead where it communicates with the frontal branch of the superficial temporal vein. It runs downward superficial to the Frontalis muscle, and joins the frontal vein at the medial angle of the orbit to form the angular vein. Previous to its junction with the frontal vein, it sends through the supraorbital notch into the orbit a branch which communicates with the ophthalmic vein; as this vessel passes through the notch, it receives the frontal diploic vein through a foramen at the bottom of the notch. The areas drained by this vessel are the forehead, eyebrow and upper eyelid. [WP,unvetted]." [http://en.wikipedia.org/wiki/Supra-orbital_vein] +subset: uberon_slim +synonym: "supra-orbital vein" EXACT [FMA:50904] +xref: EMAPA:37195 {source="MA:th"} +xref: FMA:50904 +xref: http://linkedlifedata.com/resource/umls/id/C0226535 +xref: http://www.snomedbrowser.com/Codes/Details/152006005 +xref: MA:0002228 +xref: NCIT:C33707 +xref: Supraorbital:vein +xref: UMLS:C0226535 {source="ncithesaurus:Supra-orbital_Vein"} +is_a: UBERON:0014768 ! superior palpebral vein +relationship: drains UBERON:0001604 ! levator palpebrae superioris +relationship: tributary_of UBERON:0001653 {source="FMA"} ! facial vein + +[Term] +id: UBERON:0001655 +name: submental vein +def: "A vein in the chin that is connected to the sublingual and anterior jugular veins and drains into the facial vein." [ncithesaurus:Submental_Vein] +xref: EMAPA:37188 {source="MA:th"} +xref: FMA:50925 +xref: http://linkedlifedata.com/resource/umls/id/C0226541 +xref: http://www.snomedbrowser.com/Codes/Details/152309009 +xref: MA:0002223 +xref: NCIT:C53128 +xref: UMLS:C0226541 {source="ncithesaurus:Submental_Vein"} +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0003502 ! neck blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001653 ! facial vein +relationship: part_of UBERON:0008199 ! chin +relationship: tributary_of UBERON:0001653 {source="FMA/obol"} ! facial vein + +[Term] +id: UBERON:0001656 +name: retromandibular vein +def: "The retromandibular vein (temporomaxillary vein, posterior facial vein), formed by the union of the superficial temporal and maxillary veins, descends in the substance of the parotid gland, superficial to the external carotid artery but beneath the facial nerve, between the ramus of the mandible and the sternocleidomastoideus muscle. It divides into two branches: an anterior, which passes forward and unites with the anterior facial vein to form the common facial vein. a posterior, which is joined by the posterior auricular vein and becomes the external jugular vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Retromandibular_vein] +subset: uberon_slim +synonym: "posterior facial vein" EXACT [] +synonym: "vena facialis posterior" RELATED LATIN [http://en.wikipedia.org/wiki/Retromandibular_vein] +synonym: "vena retromandibularis" RELATED LATIN [http://en.wikipedia.org/wiki/Retromandibular_vein] +xref: EMAPA:37182 {source="MA:th"} +xref: FMA:50928 +xref: http://linkedlifedata.com/resource/umls/id/C0226520 +xref: http://www.snomedbrowser.com/Codes/Details/151299003 +xref: MA:0002117 +xref: NCIT:C33746 +xref: OpenCyc:Mx4rv0bn95wpEbGdrcN5Y29ycA +xref: Retromandibular:vein +xref: UMLS:C0226520 {source="ncithesaurus:Temporo-maxillary_Vein"} +is_a: UBERON:0001653 ! facial vein +disjoint_from: UBERON:0035675 {source="lexical"} ! anterior facial vein +relationship: part_of UBERON:0001101 ! external jugular vein +relationship: tributary_of UBERON:0001101 {source="FMA"} ! external jugular vein + +[Term] +id: UBERON:0001657 +name: superficial temporal vein +def: "The superficial temporal vein is a vein of the side of the head. [WP,unvetted]." [http://en.wikipedia.org/wiki/Superficial_temporal_vein] +subset: uberon_slim +synonym: "venae temporales superficiales" RELATED LATIN [http://en.wikipedia.org/wiki/Superficial_temporal_vein] +xref: BTO:0003748 +xref: EMAPA:19315 +xref: FMA:50932 +xref: http://en.wikipedia.org/wiki/Superficial_temporal_vein +xref: http://linkedlifedata.com/resource/umls/id/C0226521 +xref: http://www.snomedbrowser.com/Codes/Details/150087005 +xref: MA:0002242 +xref: NCIT:C52700 +xref: OpenCyc:Mx4rvmANWZwpEbGdrcN5Y29ycA +xref: UMLS:C0226521 {source="ncithesaurus:Superficial_Temporal_Vein"} +is_a: UBERON:0001671 ! temporal vein +is_a: UBERON:0003502 ! neck blood vessel +relationship: part_of UBERON:0001656 ! retromandibular vein +relationship: tributary_of UBERON:0001656 {source="FMA", source="Wikipedia"} ! retromandibular vein + +[Term] +id: UBERON:0001658 +name: middle temporal vein +def: "A temporal vein that arises near the lateral angle of the eye; joins the superficial temporal veins to form the retromandibular vein." [http://medical-dictionary.thefreedictionary.com/middle+temporal+vein] +xref: EMAPA:37176 {source="MA:th"} +xref: FMA:50935 +xref: http://www.snomedbrowser.com/Codes/Details/151400007 +xref: MA:0002241 +is_a: UBERON:0001671 ! temporal vein +is_a: UBERON:0003502 ! neck blood vessel +relationship: drains UBERON:0004088 ! orbital region +relationship: part_of UBERON:0001656 ! retromandibular vein +relationship: tributary_of UBERON:0001656 {source="FMA", source="TFD"} ! retromandibular vein + +[Term] +id: UBERON:0001659 +name: transverse facial vein +def: "a tributary of the superficial temporal or retromandibular veins, anastomosing with the facial vein." [http://medical-dictionary.thefreedictionary.com/transverse+facial+vein] +subset: uberon_slim +xref: EMAPA:37200 {source="MA:th"} +xref: FMA:50938 +xref: http://www.snomedbrowser.com/Codes/Details/151501009 +xref: MA:0002247 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0003502 ! neck blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +intersection_of: UBERON:0001638 ! vein +intersection_of: anastomoses_with UBERON:0001653 ! facial vein +intersection_of: tributary_of UBERON:0001656 ! retromandibular vein +relationship: anastomoses_with UBERON:0001653 ! facial vein +relationship: part_of UBERON:0001656 ! retromandibular vein +relationship: tributary_of UBERON:0001656 ! retromandibular vein + +[Term] +id: UBERON:0001660 +name: maxillary vein +def: "A vein that consists of a short trunk which accompanies the first part of the internal maxillary artery. It is formed by a confluence of the veins of the pterygoid plexus, and passes backward between the sphenomandibular ligament and the neck of the mandible, and unites with the superficial temporal vein to form the retromandibular vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Maxillary_vein] +subset: uberon_slim +xref: EMAPA:37169 {source="MA:th"} +xref: FMA:50941 +xref: http://linkedlifedata.com/resource/umls/id/C0226524 +xref: http://www.snomedbrowser.com/Codes/Details/29972009 +xref: MA:0002169 +xref: Maxillary:vein +xref: NCIT:C32855 +xref: OpenCyc:Mx4rvlDSc5wpEbGdrcN5Y29ycA +xref: UMLS:C0226524 {source="ncithesaurus:Internal_Maxillary_Vein"} +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0003502 ! neck blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +relationship: part_of UBERON:0001656 ! retromandibular vein +relationship: tributary_of UBERON:0001656 {source="FMA"} ! retromandibular vein + +[Term] +id: UBERON:0001661 +name: deep temporal vein +def: "The blood vessels at the vertex and on either side of the head that drain deoxygenated blood into the pterygoid venous plexus." [ncithesaurus:Deep_Temporal_Vein] +xref: EMAPA:37512 {source="MA:th"} +xref: FMA:50954 +xref: http://linkedlifedata.com/resource/umls/id/C0226526 +xref: http://www.snomedbrowser.com/Codes/Details/798000 +xref: MA:0002240 +xref: NCIT:C52699 +xref: UMLS:C0226526 {source="ncithesaurus:Deep_Temporal_Vein"} +is_a: UBERON:0001671 ! temporal vein +is_a: UBERON:0035552 ! deep vein +intersection_of: UBERON:0001671 ! temporal vein +intersection_of: part_of UBERON:0035551 ! deep vasculature + +[Term] +id: UBERON:0001662 +name: anterior auricular vein +def: "The anterior auricular veins are veins which drain the anterior aspect of the external ear. [WP,unvetted]." [http://en.wikipedia.org/wiki/Anterior_auricular_veins] +synonym: "venae auriculares anteriores" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_auricular_veins] +xref: EMAPA:37132 {source="MA:th"} +xref: FMA:50956 +xref: http://en.wikipedia.org/wiki/Anterior_auricular_veins +xref: http://linkedlifedata.com/resource/umls/id/C0226527 +xref: http://www.snomedbrowser.com/Codes/Details/151602009 +xref: MA:0002083 +xref: MA:0002214 +xref: NCIT:C53027 +xref: UMLS:C0226527 {source="ncithesaurus:Anterior_Auricular_Vein"} +is_a: UBERON:0006197 ! auricular vein +disjoint_from: UBERON:0006199 {source="lexical"} ! posterior auricular vein +relationship: part_of UBERON:0001656 ! retromandibular vein +relationship: tributary_of UBERON:0001656 {source="FMA"} ! retromandibular vein + +[Term] +id: UBERON:0001663 +name: cerebral vein +def: "The cerebral veins are divisible into external and internal groups according to the outer surfaces or the inner parts of the hemispheres they drain into. The external veins are the superior cerebral veins, inferior cerebral veins, and middle cerebral vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Cerebral_veins] +subset: pheno_slim +synonym: "venae cerebri" RELATED LATIN [http://en.wikipedia.org/wiki/Cerebral_veins] +synonym: "venae encephali" RELATED LATIN [http://en.wikipedia.org/wiki/Cerebral_veins] +xref: Cerebral:veins +xref: EMAPA:37140 {source="MA:th"} +xref: FMA:50981 +xref: GAID:530 +xref: http://linkedlifedata.com/resource/umls/id/C0007797 +xref: http://www.snomedbrowser.com/Codes/Details/244392000 +xref: MA:0002096 +xref: MESH:D002550 +xref: NCIT:C53037 +xref: UMLS:C0007797 {source="ncithesaurus:Cerebral_Vein"} +xref: XAO:0004160 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003499 ! brain blood vessel +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0001893 ! telencephalon +relationship: drains UBERON:0001893 ! telencephalon +relationship: fma_set_term FMA:70861 +relationship: part_of UBERON:0001893 ! telencephalon + +[Term] +id: UBERON:0001664 +name: inferior cerebral vein +def: "The inferior cerebral veins, of small size, drain the under surfaces of the hemispheres. Those on the orbital surface of the frontal lobe join the superior cerebral veins, and through these open into the superior sagittal sinus. Those of the temporal lobe anastomose with the middle cerebral and basal veins, and join the cavernous, sphenoparietal, and superior petrosal sinuses. [WP,unvetted]." [http://en.wikipedia.org/wiki/Inferior_cerebral_veins] +subset: uberon_slim +synonym: "small cerebral vein" RELATED [] +xref: EMAPA:37154 {source="MA:th"} +xref: FMA:50986 +xref: http://en.wikipedia.org/wiki/Inferior_cerebral_veins +xref: http://www.snomedbrowser.com/Codes/Details/244395003 +xref: MA:0002097 +is_a: UBERON:0001663 ! cerebral vein + +[Term] +id: UBERON:0001665 +name: triceps surae +def: "The triceps surae is a pair of muscles located at the calf - the gastrocnemius and the soleus. These muscles both insert into the calcaneus, the bone of the heel of the human foot, and form the major part of the muscle of the back part of the lower leg, commonly known as the calf muscle. The triceps surae is connected to the foot through the Achilles tendon, and has 3 heads deriving from the 2 major masses of muscle. The superficial portion (the gastrocnemius) gives off 2 heads attaching to the base of the femur directly above the knee. The deep (profundis) mass of muscle (the soleus) forms the remaining head which attaches to the superior posterior area of the tibia. The triceps surae is innervated by the tibial nerve, specifically, nerve roots L5-S2. [WP,unvetted]." [http://en.wikipedia.org/wiki/Triceps_surae_muscle] +subset: uberon_slim +synonym: "calf muscle" RELATED [http://en.wikipedia.org/wiki/Triceps_surae_muscle] +synonym: "gastrosoleus" RELATED [http://en.wikipedia.org/wiki/Triceps_surae_muscle] +synonym: "gastrosoleus complex" RELATED [http://en.wikipedia.org/wiki/Triceps_surae_muscle] +synonym: "musculus triceps surae" RELATED LATIN [http://en.wikipedia.org/wiki/Triceps_surae_muscle] +synonym: "sural triceps" RELATED [] +xref: EMAPA:36267 +xref: FMA:51062 +xref: http://en.wikipedia.org/wiki/Triceps_surae_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224458 +xref: MA:0002400 +xref: NCIT:C53181 +xref: UMLS:C0224458 {source="ncithesaurus:Triceps_Surae"} +is_a: UBERON:0004256 ! hindlimb zeugopod muscle +relationship: has_muscle_insertion UBERON:0001450 {source="dbpedia"} ! calcaneus +relationship: has_muscle_insertion UBERON:0003701 {source="dbpedia"} ! calcaneal tendon +relationship: innervated_by UBERON:0001323 {source="dbpedia"} ! tibial nerve + +[Term] +id: UBERON:0001666 +name: flexor digitorum longus +def: "The Flexor digitorum longus is situated on the tibial side of the leg. At its origin it is thin and pointed, but it gradually increases in size as it descends. This muscle serves to curl the second, third, fourth, and fifth toes (flexion of phalanges II-V). [WP,unvetted]." [http://en.wikipedia.org/wiki/Flexor_digitorum_longus] +subset: uberon_slim +xref: BTO:0000466 +xref: EMAPA:36248 +xref: FMA:51071 +xref: http://en.wikipedia.org/wiki/Flexor_digitorum_longus +xref: http://linkedlifedata.com/resource/umls/id/C1261048 +xref: http://www.snomedbrowser.com/Codes/Details/181703002 +xref: MA:0002299 +xref: NCIT:C52921 +xref: UMLS:C1261048 {source="ncithesaurus:Flexor_Digitorum_Longus"} +is_a: UBERON:0001383 ! muscle of leg +relationship: has_muscle_insertion UBERON:0003641 ! pedal digit 2 phalanx +relationship: has_muscle_insertion UBERON:0003642 ! pedal digit 3 phalanx +relationship: has_muscle_insertion UBERON:0003862 ! pedal digit 4 phalanx +relationship: has_muscle_insertion UBERON:0003863 ! pedal digit 5 phalanx +relationship: has_muscle_origin UBERON:0000979 ! tibia +relationship: innervated_by UBERON:0001323 ! tibial nerve + +[Term] +id: UBERON:0001667 +name: tibialis posterior +def: "The Tibialis posterior is the most central of all the leg muscles, and is located in the posterior compartment of the leg. It is the key stabilizing muscle of the lower leg. [WP,unvetted]." [http://en.wikipedia.org/wiki/Tibialis_posterior_muscle] +subset: uberon_slim +synonym: "ibialis posticus" RELATED [BTO:0000867] +synonym: "musculus tibialis posterior" RELATED LATIN [http://en.wikipedia.org/wiki/Tibialis_posterior_muscle] +synonym: "posterior tibialis" RELATED [BTO:0000867] +synonym: "tibialis caudalis" EXACT [] +synonym: "tibialis posterior muscle" RELATED [BTO:0000867] +xref: BTO:0000867 +xref: EMAPA:36255 +xref: FMA:51099 +xref: http://en.wikipedia.org/wiki/Tibialis_posterior_muscle +xref: http://linkedlifedata.com/resource/umls/id/C1711425 +xref: http://www.snomedbrowser.com/Codes/Details/361824007 +xref: MA:0002394 +xref: NCIT:C53078 +xref: UMLS:C1711425 {source="ncithesaurus:Tibialis_Caudalis"} +is_a: UBERON:0008230 ! tibialis +relationship: has_muscle_antagonist UBERON:0001385 {source="dbpedia"} ! tibialis anterior +relationship: has_muscle_insertion UBERON:0001451 {source="dbpedia"} ! navicular bone of pes +relationship: has_muscle_insertion UBERON:0001452 {source="dbpedia"} ! distal tarsal bone 1 +relationship: has_muscle_origin UBERON:0000979 {source="dbpedia"} ! tibia +relationship: has_muscle_origin UBERON:0001446 {source="dbpedia"} ! fibula +relationship: innervated_by UBERON:0001323 {source="dbpedia"} ! tibial nerve + +[Term] +id: UBERON:0001668 +name: cerebellar vein +def: "A vein that drains the cerebellum." [http://orcid.org/0000-0002-6601-2165] +synonym: "cerebellum vein" EXACT [OBOL:automatic] +synonym: "epencephalon-1 vein" EXACT [OBOL:automatic] +synonym: "vein of cerebellum" EXACT [OBOL:automatic] +synonym: "vein of epencephalon-1" EXACT [OBOL:automatic] +xref: Cerebellar:veins +xref: EMAPA:37139 {source="MA:th"} +xref: FMA:51227 +xref: http://linkedlifedata.com/resource/umls/id/C0226601 +xref: http://www.snomedbrowser.com/Codes/Details/40693009 +xref: MA:0002093 +xref: NCIT:C53032 +xref: UMLS:C0226601 {source="ncithesaurus:Cerebellar_Vein"} +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0002037 ! cerebellum +relationship: drains UBERON:0002037 ! cerebellum + +[Term] +id: UBERON:0001669 +name: superior cerebellar vein +def: "The superior cerebellar veins pass partly forward and medialward, across the superior vermis, to end in the straight sinus and the internal cerebral veins, partly lateralward to the transverse and superior petrosal sinuses. [WP,unvetted]." [http://en.wikipedia.org/wiki/Superior_cerebellar_vein] +subset: uberon_slim +synonym: "vein of superior cerebellar hemisphere" EXACT [] +xref: EMAPA:37191 {source="MA:th"} +xref: FMA:51232 +xref: http://en.wikipedia.org/wiki/Superior_cerebellar_vein +xref: http://www.snomedbrowser.com/Codes/Details/64307009 +xref: MA:0002095 +is_a: UBERON:0001668 ! cerebellar vein + +[Term] +id: UBERON:0001670 +name: inferior cerebellar vein +def: "The inferior cerebellar veins are of large size, end in the transverse, superior petrosal, and occipital sinuses. [WP,unvetted]." [http://en.wikipedia.org/wiki/Inferior_cerebellar_vein] +subset: uberon_slim +synonym: "inferior vein of cerebellar hemisphere" EXACT [] +xref: EMAPA:37153 {source="MA:th"} +xref: FMA:51233 +xref: http://en.wikipedia.org/wiki/Inferior_cerebellar_vein +xref: http://www.snomedbrowser.com/Codes/Details/69104006 +xref: MA:0002094 +is_a: UBERON:0001668 ! cerebellar vein + +[Term] +id: UBERON:0001671 +name: temporal vein +def: "Any of the veins draining the temporal region." [http://www.thefreedictionary.com/temporal+vein] +subset: uberon_slim +xref: EMAPA:37196 {source="MA:th"} +xref: FMA:51302 +xref: http://linkedlifedata.com/resource/umls/id/C0924206 +xref: MA:0002239 +xref: NCIT:C53140 +xref: Temporal:vein +xref: UMLS:C0924206 {source="ncithesaurus:Temporal_Vein"} +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0003251 ! temporal part of head +relationship: drains UBERON:0003251 ! temporal part of head + +[Term] +id: UBERON:0001672 +name: anterior cerebral vein +subset: vertebrate_core +synonym: "ACeV" RELATED [] +synonym: "rostral cerebral vein" RELATED [] +xref: EMAPA:36467 +xref: FMA:51306 +xref: http://www.snomedbrowser.com/Codes/Details/55155007 +xref: TAO:0001067 +xref: XAO:0004158 +xref: ZFA:0001067 +is_a: UBERON:0001663 ! cerebral vein +disjoint_from: UBERON:2005027 {source="lexical"} ! posterior cerebral vein + +[Term] +id: UBERON:0001673 +name: central retinal vein +def: "The central retinal vein (retinal vein) is a short vein that runs through the optic nerve and drains blood from the capillaries of the retina into the larger veins outside the eye. The anatomy of the veins of the orbit of the eye varies between individuals, and in some the central retinal vein drains into the superior ophthalmic vein, and in some it drains directly into the cavernous sinus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Central_retinal_vein] +subset: efo_slim +subset: uberon_slim +synonym: "retinal vein" EXACT [MA:0002213] +synonym: "vena centralis retinae" RELATED LATIN [http://en.wikipedia.org/wiki/Central_retinal_vein] +xref: EFO:0004271 +xref: EMAPA:37185 {source="MA:th"} +xref: FMA:51799 +xref: GAID:524 +xref: http://en.wikipedia.org/wiki/Central_retinal_vein +xref: http://linkedlifedata.com/resource/umls/id/C0035327 +xref: http://www.snomedbrowser.com/Codes/Details/280913005 +xref: MA:0002213 +xref: MESH:D012169 +xref: NCIT:C53063 +xref: UMLS:C0035327 {source="ncithesaurus:Retinal_Vein"} +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: develops_from UBERON:0006011 ! hyaloid vein +relationship: develops_from_part_of UBERON:0006011 {notes="proximal portion", source="ISBN:0781772214"} ! hyaloid vein +relationship: drains UBERON:0000966 ! retina +relationship: part_of UBERON:0000019 ! camera-type eye +relationship: part_of UBERON:0003712 ! cavernous sinus +relationship: tributary_of UBERON:0003712 {source="FMA/obol"} ! cavernous sinus + +[Term] +id: UBERON:0001674 +name: masseteric vein +def: "A plexiform vein accompanying the masseteric artery that empty into the pterygoid venous plexus." [http://www.drugs.com/dict/masseteric-veins.html] +synonym: "masseteric veins" RELATED PLURAL [] +xref: EMAPA:37168 {source="MA:th"} +xref: FMA:52519 +xref: http://linkedlifedata.com/resource/umls/id/C0925179 +xref: MA:0002167 +xref: NCIT:C53051 +xref: UMLS:C0925179 {source="ncithesaurus:Masseteric_Vein"} +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0001597 ! masseter muscle +relationship: drains UBERON:0001597 ! masseter muscle + +[Term] +id: UBERON:0001675 +name: trigeminal ganglion +def: "The cranial ganglion that is associated with and extends fibers into the trigeminal nerve." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/books/NBK53171, https://github.com/obophenotype/uberon/issues/693] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "5th ganglion" EXACT [ZFA:0000295] +synonym: "fifth ganglion" EXACT [ZFA:0000295] +synonym: "fused trigeminal ganglion" NARROW SENSU [NCBITaxon:32524] +synonym: "ganglion of trigeminal complex" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "ganglion of trigeminal nerve" RELATED [BTO:0001231] +synonym: "ganglion semilunare" RELATED LATIN [http://en.wikipedia.org/wiki/Trigeminal_ganglion] +synonym: "ganglion trigeminale" RELATED [BTO:0001231] +synonym: "ganglion trigeminale" RELATED LATIN [http://en.wikipedia.org/wiki/Trigeminal_ganglion] +synonym: "Gasser's ganglion" RELATED [BTO:0001231] +synonym: "Gasserian ganglia" RELATED PLURAL [http://en.wikipedia.org/wiki/Trigeminal_ganglion] +synonym: "Gasserian ganglion" EXACT [http://en.wikipedia.org/wiki/Trigeminal_ganglion] +synonym: "gV" RELATED [] +synonym: "semilunar ganglion" EXACT [ISBN:0471888893] +synonym: "trigeminal ganglia" RELATED PLURAL [] +synonym: "trigeminal V ganglion" EXACT [MA:0001080] +synonym: "trigeminus ganglion" RELATED [] +xref: AAO:0011107 +xref: BAMS:5Gn +xref: BAMS:GV +xref: BTO:0001231 +xref: EFO:0000903 +xref: EHDAA2:0002085 +xref: EHDAA:2113 +xref: EMAPA:16797 +xref: FMA:52618 +xref: GAID:725 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1402 +xref: http://linkedlifedata.com/resource/umls/id/C0040995 +xref: http://www.snomedbrowser.com/Codes/Details/244449009 +xref: MA:0001080 +xref: MAT:0000511 +xref: MESH:D012668 +xref: NCIT:C62642 +xref: TAO:0000295 +xref: Trigeminal:ganglion +xref: UMLS:C0040995 {source="ncithesaurus:Trigeminal_Ganglion"} +xref: VHOG:0000694 +xref: XAO:0000427 +xref: XAO:0000428 +xref: ZFA:0000295 +is_a: UBERON:0001714 ! cranial ganglion +is_a: UBERON:0001800 {source="ncithesaurus"} ! sensory ganglion +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0001714 ! cranial ganglion +intersection_of: extends_fibers_into UBERON:0001645 ! trigeminal nerve +property_value: dc-contributor https://github.com/ANiknejad +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +relationship: develops_from UBERON:0006304 ! future trigeminal ganglion +relationship: extends_fibers_into UBERON:0001645 ! trigeminal nerve +relationship: immediate_transformation_of UBERON:0006304 {source="Bgee:AN"} ! future trigeminal ganglion + +[Term] +id: UBERON:0001676 +name: occipital bone +def: "the bone at the lower, posterior part of the skull" [ISBN:0-683-40008-8, MP:0005269] +subset: pheno_slim +subset: uberon_slim +synonym: "occipital complex" RELATED [http://palaeos.com/vertebrates/bones/braincase/occiput.html] +synonym: "occipital squama" RELATED [] +synonym: "os occipitale" RELATED LATIN [http://en.wikipedia.org/wiki/Occipital_bone] +xref: EMAPA:25112 +xref: FMA:52735 +xref: GAID:227 +xref: http://linkedlifedata.com/resource/umls/id/C0028784 +xref: http://www.snomedbrowser.com/Codes/Details/181796003 +xref: MA:0001468 +xref: MESH:D009777 +xref: NCIT:C12757 +xref: Occipital:bone +xref: OpenCyc:Mx4rwQtsiZwpEbGdrcN5Y29ycA +xref: UMLS:C0028784 {source="ncithesaurus:Occipital_Bone"} +is_a: UBERON:0010428 {source="FMA"} ! flat bone +is_a: UBERON:0011164 ! neurocranium bone +relationship: develops_from UBERON:0003089 {source="http://www.ncbi.nlm.nih.gov/pubmed/11523816"} ! sclerotome +relationship: part_of UBERON:0005902 {source="FMA"} ! occipital region +relationship: surrounds UBERON:0003687 ! foramen magnum + +[Term] +id: UBERON:0001677 +name: sphenoid bone +def: "An unpaired bone situated at the base of the skull in front of the temporal bone and basilar part of the occipital bone. The sphenoid bone is one of the seven bones that articulate to form the orbit. Its shape somewhat resembles that of a butterfly or bat with its wings extended." [http://en.wikipedia.org/wiki/Sphenoid_bone] +subset: pheno_slim +subset: uberon_slim +synonym: "butterfly bone" RELATED [http://en.wikipedia.org/wiki/Sphenoid_bone] +synonym: "os sphenoidale" EXACT LATIN [FMA:52736, FMA:TA] +synonym: "os sphenoidale" RELATED [http://en.wikipedia.org/wiki/Sphenoid_bone] +synonym: "os sphenoidale" RELATED LATIN [http://en.wikipedia.org/wiki/Sphenoid_bone] +synonym: "os sphenoidum" RELATED [http://en.wikipedia.org/wiki/Sphenoid_bone] +synonym: "sphenoid" EXACT [] +synonym: "sphenoid complex" RELATED [] +synonym: "sphenoidal bone" EXACT [] +xref: CALOHA:TS-2343 +xref: EMAPA:18340 +xref: FMA:52736 +xref: GAID:230 +xref: http://linkedlifedata.com/resource/umls/id/C0037884 +xref: http://www.snomedbrowser.com/Codes/Details/272676008 +xref: MA:0001472 +xref: MESH:D013100 +xref: NCIT:C12790 +xref: OpenCyc:Mx4rwAU9XpwpEbGdrcN5Y29ycA +xref: Sphenoid:bone +xref: UMLS:C0037884 {source="ncithesaurus:Sphenoid_Bone"} +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0008193 {source="FMA"} ! pneumatized bone +is_a: UBERON:0015060 ! sphenoid endochondral element +intersection_of: UBERON:0015060 ! sphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0009193 {source="cjm"} ! sphenoid cartilage element + +[Term] +id: UBERON:0001678 +name: temporal bone +def: "the large, irregular bone located at the base and side of the skull; consists of three parts at birth: squamous, tympanic, and petrous" [ISBN:0-683-40008-8, MP:0005272] +subset: pheno_slim +subset: uberon_slim +synonym: "os temporale" RELATED LATIN [http://en.wikipedia.org/wiki/Temporal_bone] +xref: EHDAA:6035 +xref: EMAPA:17682 +xref: FMA:52737 +xref: GAID:232 +xref: http://linkedlifedata.com/resource/umls/id/C0039484 +xref: http://www.snomedbrowser.com/Codes/Details/181795004 +xref: MA:0001476 +xref: MESH:D013701 +xref: NCIT:C12797 +xref: OpenCyc:Mx4rvbkAk5wpEbGdrcN5Y29ycA +xref: Temporal:bone +xref: UMLS:C0039484 {source="ncithesaurus:Temporal_Bone"} +xref: VHOG:0000800 +is_a: UBERON:0008193 {source="FMA"} ! pneumatized bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest + +[Term] +id: UBERON:0001679 +name: ethmoid bone +def: "A bone in the skull that separates the nasal cavity from the brain. As such, it is located at the roof of the nose, between the two orbits. The cubical bone is lightweight due to a spongy construction. The ethmoid bone is one of the bones that makes up the orbit of the eye[WP]" [http://en.wikipedia.org/wiki/Ethmoid_bone] +subset: pheno_slim +subset: uberon_slim +synonym: "ethmoid" EXACT [FMA:52740] +synonym: "ethmoidal bone" EXACT [MP:0000101] +synonym: "os ethmoidale" EXACT [http://en.wikipedia.org/wiki/Ethmoid] +synonym: "os ethmoidale" EXACT LATIN [FMA:52740, FMA:TA] +xref: BTO:0004140 +xref: EMAPA:19018 +xref: Ethmoid:bone +xref: FMA:52740 +xref: GAID:212 +xref: http://linkedlifedata.com/resource/umls/id/C0015027 +xref: http://www.snomedbrowser.com/Codes/Details/272674006 +xref: MA:0001483 +xref: MESH:D005004 +xref: NCIT:C12711 +xref: OpenCyc:Mx4rvuUPh5wpEbGdrcN5Y29ycA +xref: UMLS:C0015027 {source="ncithesaurus:Ethmoid_Bone"} +xref: VHOG:0001317 +is_a: UBERON:0002513 {source="ISBN:0073040584"} ! endochondral bone +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0011164 ! neurocranium bone +relationship: contributes_to_morphology_of UBERON:0011156 ! facial skeleton +relationship: develops_from UBERON:0006227 {evidence="definitional"} ! ethmoid bone primordium +relationship: part_of UBERON:0002517 ! basicranium +relationship: part_of UBERON:0011241 ! ethmoid region + +[Term] +id: UBERON:0001680 +name: lacrimal bone +def: "the irregularly thin plate that forms part of the medial wall of the orbit behind the frontal process of the maxilla" [ISBN:0-683-40008-8, MP:0005271] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "infraorbital 1" RELATED SENSU [TODO:TODO, VHOG:0001149, ZFA:0000223] +synonym: "lachrymal bone" EXACT [] +synonym: "lachrymal bone - infraorbital 1" RELATED [VHOG:0001149] +synonym: "lacrimal" BROAD [] +synonym: "lacrimal - infraorbital 1" RELATED [VHOG:0001149] +synonym: "lacrymal bone" EXACT [] +synonym: "lacrymal bone - infraorbital 1" RELATED [VHOG:0001149] +synonym: "os lacrimale" RELATED LATIN [http://en.wikipedia.org/wiki/Lacrimal_bone] +xref: FMA:52741 +xref: http://linkedlifedata.com/resource/umls/id/C0222733 +xref: http://www.snomedbrowser.com/Codes/Details/272675007 +xref: Lacrimal:bone +xref: MA:0001486 +xref: NCIT:C32906 +xref: UMLS:C0222733 {source="ncithesaurus:Lacrimal_Bone"} +xref: VHOG:0001149 +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0008001 {source="FMA"} ! irregular bone +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0015212 ! lateral structure +relationship: contributes_to_morphology_of UBERON:0011156 ! facial skeleton +relationship: dubious_for_taxon NCBITaxon:8292 {source="Wikipedia"} +relationship: in_lateral_side_of UBERON:0011156 {source="FMA-abduced-lr"} ! facial skeleton +relationship: part_of UBERON:0003113 {notes="orbital series", source="ISBN:0073040584"} ! dermatocranium + +[Term] +id: UBERON:0001681 +name: nasal bone +def: "One of two small oblong bones, varying in size and form in different individuals; they are placed side by side at the middle and upper part of the face, and form, by their junction, 'the bridge' of the nose[WP]. Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish[ZFA]." [http://en.wikipedia.org/wiki/Nasal_bone, https://github.com/obophenotype/uberon/issues/265, ZFIN:curator] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "adnasal@fr" EXACT [TAO:0000365] +synonym: "nasal bones" RELATED PLURAL [ZFA:0000365] +synonym: "nasal@fr" EXACT [TAO:0000365] +synonym: "nasals" RELATED PLURAL [TAO:0000365] +synonym: "os nasale" RELATED LATIN [http://en.wikipedia.org/wiki/Nasal_bone] +xref: AAO:0000312 +xref: EMAPA:19202 +xref: FMA:52745 +xref: GAID:222 +xref: http://linkedlifedata.com/resource/umls/id/C0027422 +xref: http://www.snomedbrowser.com/Codes/Details/181801008 +xref: MA:0001494 +xref: MESH:D009295 +xref: Nasal:bone +xref: NCIT:C33157 +xref: OpenCyc:Mx4rwGOTZJwpEbGdrcN5Y29ycA +xref: TAO:0000365 +xref: UMLS:C0027422 {source="ncithesaurus:Nasal_Bone"} +xref: VHOG:0001370 +xref: ZFA:0000365 +is_a: UBERON:0002514 ! intramembranous bone +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0010428 {source="FMA"} ! flat bone +is_a: UBERON:0015212 ! lateral structure +relationship: contributes_to_morphology_of UBERON:0011156 ! facial skeleton +relationship: in_lateral_side_of UBERON:0011156 {source="FMA-abduced-lr"} ! facial skeleton +relationship: part_of UBERON:0000004 ! nose +relationship: part_of UBERON:0003113 {notes="facial series", source="ISBN:0073040584"} ! dermatocranium + +[Term] +id: UBERON:0001682 +name: palatine bone +def: "A paired dermal bone situated in the mid-palate[Palaeos]." [http://en.wikipedia.org/wiki/Palatine_bone, http://palaeos.com/vertebrates/bones/dermal/palatal-palatines.html] +subset: pheno_slim +subset: uberon_slim +synonym: "dermopalatine" NARROW [http://palaeos.com/vertebrates/glossary/glossaryD.html] +synonym: "os palatinum" RELATED LATIN [] +synonym: "palate bone" RELATED [] +synonym: "palatine" EXACT [] +synonym: "palatum" RELATED [http://en.wikipedia.org/wiki/Palatine_bone] +xref: EMAPA:36619 +xref: FMA:52746 +xref: http://linkedlifedata.com/resource/umls/id/C0222734 +xref: http://palaeos.com/vertebrates/bones/dermal/images/289x311xPalatine1.gif.pagespeed.ic.tglmNBrF4D.png +xref: http://www.snomedbrowser.com/Codes/Details/244654005 +xref: MA:0001495 +xref: NCIT:C52745 +xref: Palatine:bone +xref: TAO:0000015 +xref: UMLS:C0222734 {source="ncithesaurus:Palatine_Bone"} +is_a: UBERON:0008001 {source="FMA"} ! irregular bone +is_a: UBERON:0011597 ! bone of upper jaw +is_a: UBERON:0012071 ! palate bone +is_a: UBERON:0015212 ! lateral structure +relationship: connected_to UBERON:0002397 ! maxilla +relationship: contributes_to_morphology_of UBERON:0011156 ! facial skeleton +relationship: in_lateral_side_of UBERON:0011156 {source="FMA-abduced-lr"} ! facial skeleton +relationship: in_lateral_side_of UBERON:0012072 {source="ISBN:0073040584"} ! palatal part of dermatocranium +relationship: part_of UBERON:0011085 ! palatoquadrate arch + +[Term] +id: UBERON:0001683 +name: jugal bone +def: "the quadrilateral bone that forms the prominence of the cheek" [ISBN:0-683-40008-8, MP:0005270] +subset: pheno_slim +subset: uberon_slim +synonym: "cheek bone" EXACT [] +synonym: "jugal" RELATED [http://en.wikipedia.org/wiki/Zygomatic_bone] +synonym: "jugal bone" RELATED [GAID:225, http://en.wikipedia.org/wiki/Zygomatic_bone] +synonym: "jugale" RELATED SENSU [] +synonym: "malar bone" EXACT [FMA:52747] +synonym: "orbital bone" EXACT [] +synonym: "os zygomaticum" EXACT [FMA:52747, FMA:TA] +synonym: "os zygomaticum" RELATED LATIN [http://en.wikipedia.org/wiki/Zygomatic_bone] +synonym: "os zygomaticus" RELATED [http://en.wikipedia.org/wiki/Zygomatic_bone] +synonym: "zygoma" RELATED [http://en.wikipedia.org/wiki/Zygomatic_bone] +synonym: "zygoma" RELATED [GAID:225] +synonym: "zygomatic" RELATED [] +synonym: "zygomatic bone" EXACT HUMAN_PREFERRED [https://github.com/obophenotype/uberon/issues/121, MA:0001497] +xref: EMAPA:25111 +xref: FMA:52747 +xref: GAID:225 +xref: http://www.snomedbrowser.com/Codes/Details/272683001 +xref: Jugal:bone +xref: MA:0001497 +xref: MFMO:0000146 +xref: VHOG:0001638 +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0008001 {source="FMA"} ! irregular bone +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0015212 ! lateral structure +relationship: contributes_to_morphology_of UBERON:0011156 ! facial skeleton +relationship: in_lateral_side_of UBERON:0011156 {source="FMA-abduced-lr"} ! facial skeleton +relationship: part_of UBERON:0001567 ! cheek +relationship: part_of UBERON:0003113 {notes="orbital series", source="ISBN:0073040584"} ! dermatocranium + +[Term] +id: UBERON:0001684 +name: mandible +def: "A dentary bone that is the only bone in one of the lateral halves of the lower jaw skeleton." [http://en.wikipedia.org/wiki/Human_mandible, http://en.wikipedia.org/wiki/Mandible] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "inferior maxillary bone" EXACT [] +synonym: "lower jaw" BROAD SENSU [] +synonym: "lower jaw bone" BROAD SENSU [] +synonym: "lower mandibula" NARROW SENSU [http://en.wikipedia.org/wiki/Mandible] +synonym: "mammaliam mandible" EXACT [] +synonym: "mandibula" RELATED LATIN [http://en.wikipedia.org/wiki/Human_mandible] +synonym: "mandibula" RELATED [BTO:0001748] +synonym: "mandibular series" RELATED [ZFA:0001273] +synonym: "mandibulla" EXACT [] +xref: BTO:0001748 +xref: CALOHA:TS-2225 +xref: EFO:0001965 +xref: EHDAA2:0001059 +xref: EHDAA:8007 +xref: EMAPA:18290 +xref: FMA:52748 +xref: GAID:68 +xref: galen:Mandible +xref: http://linkedlifedata.com/resource/umls/id/C0024687 +xref: http://www.snomedbrowser.com/Codes/Details/181812008 +xref: Human:mandible +xref: MA:0001487 +xref: MESH:D008334 +xref: NCIT:C12290 +xref: UMLS:C0024687 {source="ncithesaurus:Mandible"} +is_a: UBERON:0002514 {source="EHDAA2"} ! intramembranous bone +is_a: UBERON:0004742 ! dentary +relationship: contributes_to_morphology_of UBERON:0001708 ! jaw skeleton + +[Term] +id: UBERON:0001685 +name: hyoid bone +def: "A horseshoe shaped bone situated in the anterior midline of the neck between the chin and the thyroid cartilage. The hyoid bone provides attachment to the muscles of the floor of the mouth and the tongue above, the larynx below, and the epiglottis and pharynx behind. [WP,modified]." [http://en.wikipedia.org/wiki/Hyoid_bone] +subset: pheno_slim +subset: uberon_slim +synonym: "hyoid" RELATED [http://en.wikipedia.org/wiki/Hyoid_bone] +synonym: "hyoid bone" RELATED [http://en.wikipedia.org/wiki/Hyoid_bone] +synonym: "hyoideum" RELATED [http://en.wikipedia.org/wiki/Hyoid_bone] +synonym: "lingual bone" RELATED [http://en.wikipedia.org/wiki/Hyoid_bone] +synonym: "os hyoideum" RELATED LATIN [http://en.wikipedia.org/wiki/Hyoid_bone] +synonym: "os hyoideum" RELATED [http://en.wikipedia.org/wiki/Hyoid_bone] +xref: AAO:0000684 +xref: EMAPA:18650 +xref: FMA:52749 +xref: GAID:197 +xref: http://linkedlifedata.com/resource/umls/id/C0020417 +xref: http://www.snomedbrowser.com/Codes/Details/263352000 +xref: Hyoid:bone +xref: MA:0001484 +xref: MESH:D006928 +xref: NCIT:C32752 +xref: UMLS:C0020417 {source="ncithesaurus:Hyoid_Bone"} +xref: VHOG:0001325 +is_a: UBERON:0008001 {source="FMA"} ! irregular bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: has_developmental_contribution_from UBERON:0003066 {source="Wikipedia"} ! pharyngeal arch 2 +relationship: has_developmental_contribution_from UBERON:0003114 {source="Wikipedia"} ! pharyngeal arch 3 +relationship: part_of UBERON:0010272 ! hyoid apparatus + +[Term] +id: UBERON:0001686 +name: auditory ossicle bone +def: "One of 3 small bones contained within the middle ear space and serve to transmit sounds from the air to the fluid-filled labyrinth. The absence of the auditory ossicles would constitute a moderate-to-severe hearing loss. The term 'ossicles' literally means 'tiny bones' and commonly refers to the auditory ossicles, though the term may refer to any small bone throughout the body. [WP,unvetted]." [http://en.wikipedia.org/wiki/Auditory_ossicle, https://github.com/obophenotype/uberon/issues/91] +subset: pheno_slim +subset: uberon_slim +synonym: "auditory bone" EXACT [] +synonym: "auditory ossicle" RELATED [MA:0000254] +synonym: "ear bone" RELATED [MA:0000254] +synonym: "ear ossicle" RELATED [] +synonym: "ear ossicles" RELATED PLURAL [] +synonym: "middle ear bone" RELATED [] +synonym: "middle ear ossicle" EXACT [MP:0005105] +synonym: "ossicle" BROAD [EMAPA:17824, http://en.wikipedia.org/wiki/Auditory_ossicle] +synonym: "ossicle of ear" RELATED [] +synonym: "ossicle of inner ear" RELATED [] +synonym: "ossicular chain" RELATED PLURAL [] +xref: AAO:0011015 +xref: Auditory:ossicle +xref: EHDAA2:0001183 +xref: EHDAA:5697 +xref: EMAPA:17824 +xref: EV:0100360 +xref: FMA:52750 +xref: http://linkedlifedata.com/resource/umls/id/C0013450 +xref: http://www.snomedbrowser.com/Codes/Details/181184001 +xref: MA:0000254 +xref: NCIT:C32164 +xref: UMLS:C0013450 {source="ncithesaurus:Auditory_Ossicle"} +xref: VHOG:0000461 +xref: XAO:0000214 +is_a: UBERON:0003457 ! head bone +is_a: UBERON:0035130 ! auditory ossicle endochondral element +intersection_of: UBERON:0035130 ! auditory ossicle endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +property_value: dc-contributor https://github.com/cmungall + +[Term] +id: UBERON:0001687 +name: stapes bone +def: "The stapes or stirrup is the stirrup-shaped small bone or ossicle in the middle ear which is attached to the incus laterally and to the fenestra ovalis, the 'oval window' medially. The oval window is adjacent to the vestibule of the inner ear. The stapes is the smallest and lightest bone in the human body. The stapes transmits the sound vibrations from the incus to the membrane of the inner ear inside the fenestra ovalis. The stapes is also stabilized by the stapedius muscle, which is innervated by the facial nerve. In non-mammalian vertebrates, the bone homologous to the stapes is usually called the columella; however, in reptiles, either term may be used[WP,unvetted]." [http://en.wikipedia.org/wiki/Stapes, https://doi.org/10.1111/j.1469-7580.2005.00441.x] +subset: pheno_slim +subset: uberon_slim +synonym: "columella" RELATED SENSU [http://en.wikipedia.org/wiki/Stapes] +synonym: "columella auris" RELATED [AAO:0000580] +synonym: "columellare" RELATED [AAO:0000580] +synonym: "interstapediale" RELATED [AAO:0000580] +synonym: "mediostapediale" RELATED [AAO:0000580] +synonym: "mesostapediale" RELATED [AAO:0000580] +synonym: "os columellare" RELATED [AAO:0000580] +synonym: "os intermedium" RELATED [AAO:0000580] +synonym: "stapellos" RELATED LATIN [http://en.wikipedia.org/wiki/Stapes] +synonym: "stapes" RELATED [AAO:0000580] +synonym: "stelidium" RELATED [AAO:0000580] +synonym: "stilus columellare" RELATED [AAO:0000580] +synonym: "stirrup" EXACT [] +xref: EMAPA:18585 +xref: FMA:52751 +xref: GAID:868 +xref: http://en.wikipedia.org/wiki/Stapes +xref: http://linkedlifedata.com/resource/umls/id/C0038152 +xref: http://www.snomedbrowser.com/Codes/Details/264199009 +xref: MA:0001217 +xref: MESH:D013199 +xref: NCIT:C33612 +xref: OpenCyc:Mx4rv5UnkZwpEbGdrcN5Y29ycA +xref: UMLS:C0038152 {source="ncithesaurus:Stapes"} +xref: VHOG:0000688 +is_a: UBERON:0001686 ! auditory ossicle bone +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0015016 ! stapes endochondral element +intersection_of: UBERON:0015016 ! stapes endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +disjoint_from: UBERON:0008283 ! columnella +relationship: develops_from UBERON:0004368 {contradicted_by="DOI:10.1111/j.1469-7580.2006.00524.x", source="classical definition"} ! Reichert's cartilage +relationship: develops_from UBERON:0010055 {source="definitional"} ! stapes cartilage element + +[Term] +id: UBERON:0001688 +name: incus bone +def: "The incus or anvil is the anvil-shaped small bone or ossicle in the middle ear. It connects the malleus to the stapes. It was first described by Alessandro Achillin of Bologna. The incus transmits sound vibrations from the malleus to the stapes. The incus only exists in mammals, and is derived from a reptilian upper jaw bone, the quadrate bone. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [http://en.wikipedia.org/wiki/Incus] +subset: pheno_slim +subset: uberon_slim +synonym: "incus" EXACT [MA:0001215] +synonym: "incus bone" EXACT [] +synonym: "quadrate - incus" BROAD [VHOG:0000689] +xref: EMAPA:18583 +xref: FMA:52752 +xref: GAID:866 +xref: http://en.wikipedia.org/wiki/Incus +xref: http://linkedlifedata.com/resource/umls/id/C0021181 +xref: http://www.snomedbrowser.com/Codes/Details/272649008 +xref: MA:0001215 +xref: MESH:D007188 +xref: NCIT:C32770 +xref: UMLS:C0021181 {source="ncithesaurus:Incus"} +xref: VHOG:0000689 +is_a: UBERON:0001686 ! auditory ossicle bone +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0015017 ! incus endochondral element +intersection_of: UBERON:0015017 ! incus endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0007374 {source="EMAPA-implied"} ! incus cartilage element + +[Term] +id: UBERON:0001689 +name: malleus bone +def: "The malleus or hammer is a hammer-shaped small bone or ossicle of the middle ear which connects with the incus and is attached to the inner surface of the eardrum. The word is Latin for hammer. It transmits the sound vibrations from the eardrum to the incus. The malleus is unique to mammals, and evolved from a lower jaw bone in basal amniotes called the articular, which still forms part of the jaw joint in reptiles. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [http://en.wikipedia.org/wiki/Malleus] +subset: pheno_slim +subset: uberon_slim +synonym: "anguloarticular - malleus" BROAD [VHOG:0000690] +synonym: "malleus" BROAD [MA:0001216] +synonym: "malleus" EXACT LATIN [http://en.wikipedia.org/wiki/Malleus] +xref: EMAPA:18584 +xref: FMA:52753 +xref: GAID:867 +xref: http://en.wikipedia.org/wiki/Malleus +xref: http://linkedlifedata.com/resource/umls/id/C0024631 +xref: http://www.snomedbrowser.com/Codes/Details/264090005 +xref: MA:0001216 +xref: MESH:D008307 +xref: NCIT:C33051 +xref: UMLS:C0024631 {source="ncithesaurus:Malleus"} +xref: VHOG:0000690 +is_a: UBERON:0001686 ! auditory ossicle bone +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0015018 ! malleus endochondral element +intersection_of: UBERON:0015018 ! malleus endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010054 {source="cjm"} ! malleus cartilage element + +[Term] +id: UBERON:0001690 +name: ear +def: "Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, http://en.wikipedia.org/wiki/Ear] +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "auditory apparatus" RELATED [] +synonym: "auris" RELATED [BTO:0000368] +xref: AAO:0011014 +xref: BIRNLEX:1062 +xref: BTO:0000368 +xref: CALOHA:TS-1165 +xref: EFO:0000826 +xref: EHDAA2:0000423 +xref: EHDAA:502 +xref: EMAPA:16193 +xref: EV:0100353 +xref: FMA:52780 +xref: GAID:62 +xref: galen:Ear +xref: http://en.wikipedia.org/wiki/Ear +xref: http://linkedlifedata.com/resource/umls/id/C0013443 +xref: http://linkedlifedata.com/resource/umls/id/C0521421 +xref: http://www.snomedbrowser.com/Codes/Details/1910005 +xref: MA:0000236 +xref: MAT:0000138 +xref: MESH:D004423 +xref: MIAA:0000138 +xref: NCIT:C12394 +xref: OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA +xref: OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA +xref: UMLS:C0013443 {source="ncithesaurus:Ear"} +xref: UMLS:C0013443 {source="BIRNLEX:1062"} +xref: UMLS:C0521421 {source="BIRNLEX:1062"} +xref: VHOG:0000330 +xref: XAO:0000189 +is_a: UBERON:0000020 ! sense organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +disjoint_from: UBERON:0014448 ! feathered ear tuft +relationship: part_of UBERON:0000033 ! head +relationship: part_of UBERON:0002105 ! vestibulo-auditory system + +[Term] +id: UBERON:0001691 +name: external ear +def: "Part of the ear external to the tympanum (eardrum). It typically consists of a tube (the external auditory meatus) that directs sound waves on to the tympanum, and may also include the external pinna, which extends beyond the skull[GO]." [GO:0042473, http://en.wikipedia.org/wiki/External_ear] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "auricular region" BROAD [] +synonym: "auricular region of head" EXACT [] +synonym: "auris externa" RELATED [BTO:0002100] +synonym: "outer ear" EXACT [MA:0000258] +xref: AAO:0011037 +xref: BIRNLEX:1705 +xref: BTO:0002100 +xref: EFO:0004221 +xref: EHDAA2:0000462 +xref: EHDAA:3786 +xref: EMAPA:16991 +xref: EV:0100354 +xref: External:ear +xref: FMA:52781 +xref: GAID:104 +xref: http://linkedlifedata.com/resource/umls/id/C0013453 +xref: http://linkedlifedata.com/resource/umls/id/C1269548 +xref: http://www.snomedbrowser.com/Codes/Details/420893000 +xref: MA:0000258 +xref: MAT:0000147 +xref: MESH:D004431 +xref: MIAA:0000147 +xref: NCIT:C12292 +xref: OpenCyc:Mx4rwOHtXJwpEbGdrcN5Y29ycA +xref: UMLS:C0013453 {source="ncithesaurus:External_Ear"} +xref: UMLS:C0013453 {source="BIRNLEX:1705"} +xref: UMLS:C1269548 {source="BIRNLEX:1705"} +xref: VHOG:0000311 +xref: XAO:0000190 +is_a: UBERON:0001444 ! subdivision of head +is_a: UBERON:0015212 ! lateral structure +disjoint_from: UBERON:0006618 ! atrium auricular region +relationship: contributes_to_morphology_of UBERON:0000033 ! head +relationship: contributes_to_morphology_of UBERON:0001690 ! ear +relationship: in_lateral_side_of UBERON:0000033 ! head +relationship: part_of UBERON:0001690 ! ear + +[Term] +id: UBERON:0001692 +name: basioccipital bone +def: "One of the bones of the occiput, the part of the skull which articulates with the spine. The basioccipital is located (if present) ventral to the foramen magnum. It often rests on or articulates with the basisphenoid, as well as meeting the exoccipitals. The basioccipital usually forms most (sometimes all) of the occipital condyle(s) and the ventral margin of the foramen magnum." [http://en.wikipedia.org/wiki/Basilar_part_of_occipital_bone, http://palaeos.com/vertebrates/glossary/glossaryB.html] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "basi-occipital" EXACT [] +synonym: "basilar part of occipital bone" EXACT [] +synonym: "basinial@fr" EXACT [TAO:0000472] +synonym: "basinioste@fr" EXACT [TAO:0000472] +synonym: "basioccipital" EXACT [] +synonym: "basioccipital bone" EXACT [] +synonym: "basioccipital@fr" EXACT [TAO:0000472] +synonym: "pars basilaris ossis occipitalis" RELATED LATIN [http://en.wikipedia.org/wiki/Basilar_part_of_occipital_bone] +xref: AAO:0000039 +xref: EMAPA:18705 +xref: FMA:52858 +xref: http://en.wikipedia.org/wiki/Basilar_part_of_occipital_bone +xref: http://www.snomedbrowser.com/Codes/Details/138976007 +xref: MA:0001462 +xref: MFMO:0000045 +xref: TAO:0000472 +xref: VHOG:0001152 +xref: ZFA:0000472 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:0015048 ! basioccipital endochondral element +intersection_of: UBERON:0015048 ! basioccipital endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0006209 ! basioccipital cartilage element + +[Term] +id: UBERON:0001693 +name: exoccipital bone +def: "Paired cartilage bone that bears a large foramen (lateral occipital foramen). Contacts the supraoccipital dorsally, the epiotic laterally and the basioccipital ventrally. Forms the posterior hind margin of the cranium and borders the lateral and posterior margins of the forum (foramen) magnum." [http://en.wikipedia.org/wiki/Lateral_parts_of_occipital_bone, ZFIN:curator] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "exoccipital" EXACT [FMA:52859] +synonym: "exoccipital@fr" EXACT [TAO:0000661] +synonym: "exoccipitals" EXACT PLURAL [TAO:0000661] +synonym: "lateral part of occipital bone" EXACT [FMA:52859] +synonym: "occipital latéral@fr" EXACT [TAO:0000661] +synonym: "pars lateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_parts_of_occipital_bone] +synonym: "pars lateralis" RELATED [http://en.wikipedia.org/wiki/Lateral_parts_of_occipital_bone] +synonym: "pars lateralis ossis occipitalis" EXACT LATIN [FMA:52859, FMA:TA] +synonym: "pleurinial@fr" EXACT [TAO:0000661] +synonym: "pleurinioste@fr" EXACT [TAO:0000661] +xref: AAO:0000147 +xref: EMAPA:18708 +xref: FMA:52859 +xref: http://en.wikipedia.org/wiki/Lateral_parts_of_occipital_bone +xref: http://www.snomedbrowser.com/Codes/Details/139279001 +xref: MA:0001464 +xref: TAO:0000661 +xref: VHOG:0001151 +xref: ZFA:0000661 +is_a: UBERON:0002513 {source="ZFA"} ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:0015051 ! exoccipital endochondral element +intersection_of: UBERON:0015051 ! exoccipital endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0009635 {source="ZFA"} ! parachordal cartilage +relationship: develops_from UBERON:0010752 ! exoccipital cartilage element + +[Term] +id: UBERON:0001694 +name: petrous part of temporal bone +def: "The petrous portion of the temporal bone or pyramid is pyramidal and is wedged in at the base of the skull between the sphenoid and occipital bones. Directed medially, forward, and a little upward, it presents for examination a base, an apex, three surfaces, and three angles, and contains, in its interior, the essential parts of the organ of hearing. The petrous portion is among the most basal elements of the skull and forms part of the endocranium.[WP,unvetted]." [http://en.wikipedia.org/wiki/Petrous_part_of_the_temporal_bone] +subset: uberon_slim +synonym: "pars petrosa (os temporale)" EXACT [FMA:52871] +synonym: "pars petrosa ossis temporalis" EXACT [] +synonym: "petromastoid part of temporal bone" EXACT [FMA:52871] +synonym: "petrosal" BROAD [VHOG:0001553] +synonym: "petrosal bone" RELATED [FMA:52871] +synonym: "petrous bone" RELATED [FMA:52871] +synonym: "temporal bone petrous part" EXACT [] +xref: EHDAA2:0001452 +xref: EMAPA:17683 +xref: FMA:52871 +xref: GAID:234 +xref: http://en.wikipedia.org/wiki/Petrous_part_of_the_temporal_bone +xref: http://linkedlifedata.com/resource/umls/id/C1261761 +xref: http://www.snomedbrowser.com/Codes/Details/361733004 +xref: MA:0001477 +xref: MESH:D010579 +xref: NCIT:C32316 +xref: UMLS:C1261761 {source="ncithesaurus:Ciliary_Process"} +xref: VHOG:0001553 +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0001678 ! temporal bone +relationship: part_of UBERON:0002517 {source="FMA"} ! basicranium + +[Term] +id: UBERON:0001695 +name: squamous part of temporal bone +def: "A bone which is fused with the temporal bone in many mammals and forms part of the cheek region articulating with quadrate and pterygoid in other vertebrates." [http://en.wikipedia.org/wiki/Squama_temporalis, http://en.wikipedia.org/wiki/Squamosal_bone, https://github.com/obophenotype/uberon/issues/122, MP:0004423] +subset: pheno_slim +synonym: "os squamosum" EXACT LATIN [] +synonym: "pars squamosa (os temporale)" EXACT [] +synonym: "pars squamosa ossis temporalis" EXACT LATIN [FMA:52883, FMA:TA] +synonym: "squama" RELATED [] +synonym: "squama temporalis" EXACT [http://en.wikipedia.org/wiki/Squama_temporalis] +synonym: "squama temporalis" RELATED LATIN [http://en.wikipedia.org/wiki/Squama_temporalis] +synonym: "squamosal" EXACT [AAO:0000574] +synonym: "squamosal bone" EXACT [https://github.com/obophenotype/uberon/issues/122, MA:0001473] +synonym: "squamosum" EXACT [] +synonym: "squamous bone" EXACT [https://github.com/obophenotype/uberon/issues/122] +synonym: "temporal bone squamous part" EXACT [MP:0004423, VHOG:0001561] +xref: AAO:0000574 +xref: EMAPA:18021 +xref: FMA:52883 +xref: http://www.snomedbrowser.com/Codes/Details/138672006 +xref: MA:0001473 +xref: Squamosal:bone +xref: VHOG:0001561 +is_a: UBERON:0002514 {source="EHDAA2-inferred"} ! intramembranous bone +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0011164 ! neurocranium bone +relationship: contributes_to_morphology_of UBERON:0001678 ! temporal bone +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +relationship: develops_from UBERON:0010751 ! squamous part of temporal bone primordium +relationship: part_of UBERON:0001678 {notes="see comments"} ! temporal bone +relationship: part_of UBERON:0003113 {notes="temporal series", source="ISBN:0073040584"} ! dermatocranium +relationship: part_of UBERON:0004339 {source="http://www.ncbi.nlm.nih.gov/pubmed/11523816", source="EHDAA2"} ! vault of skull + +[Term] +id: UBERON:0001697 +name: orbit of skull +def: "Subdivision of skeleton that is an anterolateral part of the cranium and structurally supports the eye. Includes bones formed and located in sclerotic layer of eyeball." [http://en.wikipedia.org/wiki/Orbit_(anatomy), http://orcid.org/0000-0002-6601-2165, TAO:0001410] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "bony orbit" EXACT [] +synonym: "eye socket" EXACT [] +synonym: "orbit" RELATED [ZFA:0001410] +synonym: "orbit of skull" EXACT [FMA:53074] +xref: BTO:0004687 +xref: FMA:53074 +xref: GAID:223 +xref: galen:Orbit +xref: http://linkedlifedata.com/resource/umls/id/C0029180 +xref: MA:0002482 +xref: MESH:D009915 +xref: NCIT:C12347 +xref: OpenCyc:Mx4rvW8EgZwpEbGdrcN5Y29ycA +xref: Orbit:(anatomy) +xref: TAO:0001410 +xref: UMLS:C0029180 {source="ncithesaurus:Orbit"} +xref: XAO:0003171 +xref: ZFA:0001410 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010912 ! subdivision of skeleton +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0011156 {source="FMA-abduced-lr"} ! facial skeleton +relationship: location_of UBERON:0000019 ! camera-type eye +relationship: part_of UBERON:0004088 ! orbital region +relationship: part_of UBERON:0011156 ! facial skeleton + +[Term] +id: UBERON:0001698 +name: foramen ovale of skull +def: "one of the larger of the several holes at the base of the skull that transmit nerves through the skull. The foramen ovale is situated in the anterior part of the sphenoid bone, posteriolateral to the foramen rotundum.." [http://en.wikipedia.org/wiki/Foramen_ovale_(skull)] +synonym: "foramen ovale" NARROW [AAO:0000169, FMA:53155] +synonym: "foramen ovale (skull)" EXACT [FMA:53155] +synonym: "foramen ovale basis cranii" EXACT [galen:ForamenOvaleBasisCranii] +synonym: "foramen ovale cranii" EXACT [] +synonym: "foramen ovale of chondrocranium" EXACT [EMAPA:18711] +synonym: "foramen ovale of cranium" EXACT [] +synonym: "foramen ovale of sphenoid" RELATED [FMA:53155] +xref: AAO:0000169 +xref: EHDAA2:0000551 +xref: EHDAA:10627 +xref: EMAPA:18711 +xref: FMA:53155 +xref: galen:ForamenOvaleBasisCranii +xref: http://en.wikipedia.org/wiki/Foramen_ovale_(skull) +xref: http://www.snomedbrowser.com/Codes/Details/369441001 +xref: VHOG:0001189 +is_a: UBERON:0013685 ! foramen of skull +disjoint_from: UBERON:0004754 ! foramen ovale of heart +relationship: located_in UBERON:0001677 ! sphenoid bone + +[Term] +id: UBERON:0001699 +name: sensory root of facial nerve +def: "The nervus intermedius, or intermediate nerve, is the part of the facial nerve (cranial nerve VII) located between the motor component of the facial nerve and the vestibulocochlear nerve (cranial nerve VIII). It contains the sensory and parasympathetic fibers of the facial nerve. Upon reaching the facial canal, it joins with the motor root of the facial nerve at the geniculate ganglion. [WP,unvetted]." [http://en.wikipedia.org/wiki/Intermediate_nerve] +subset: uberon_slim +subset: vertebrate_core +synonym: "intermediate nerve" RELATED [FMA:53410] +synonym: "nerve of Wrisberg" RELATED [] +synonym: "nervus intermedius" RELATED LATIN [FMA:53410, FMA:TA] +synonym: "pars intermedii of Wrisberg" RELATED [] +synonym: "sensory component of the VIIth (facial) nerve" EXACT [] +synonym: "sensory roots of facial nerves" RELATED PLURAL [ZFA:0000679] +synonym: "Wrisberg's nerve" RELATED [FMA:53410] +xref: BAMS:imn +xref: BAMS:iVIIn +xref: DHBA:12864 +xref: FMA:53410 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=552 +xref: http://www.snomedbrowser.com/Codes/Details/279927001 +xref: Intermediate:nerve +xref: MBA:1131 +xref: TAO:0000679 +xref: ZFA:0000679 +is_a: UBERON:0004674 ! facial nerve root +relationship: develops_from UBERON:0003099 {source="Wikipedia"} ! cranial neural crest +relationship: part_of UBERON:0001896 ! medulla oblongata + +[Term] +id: UBERON:0001700 +name: geniculate ganglion +def: "the group of sensory neuron cell bodies associated with the facial nerve (seventh cranial nerve)" [ISBN:0-683-40008-8, MP:0001082] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "facial ganglion" RELATED [ZFA:0001291] +synonym: "facial VII ganglion" EXACT [MA:0001076] +synonym: "ganglion genicularum" EXACT [FMA:53414] +synonym: "ganglion geniculi" RELATED [http://en.wikipedia.org/wiki/Geniculate_ganglion] +synonym: "ganglion geniculi nervi facialis" RELATED LATIN [http://en.wikipedia.org/wiki/Geniculate_ganglion] +synonym: "genicular ganglion" EXACT [FMA:53414] +synonym: "genicular ganglion" EXACT [http://en.wikipedia.org/wiki/Geniculate_ganglion] +synonym: "geniculate" BROAD [http://en.wikipedia.org/wiki/Geniculate_ganglion] +synonym: "geniculate ganglion" RELATED [MA:0001076] +synonym: "gVII" EXACT [ZFA:0001291] +synonym: "internal genu" RELATED [http://en.wikipedia.org/wiki/Geniculate_ganglion] +xref: BAMS:GgVII +xref: EFO:0003669 +xref: EHDAA2:0000491 +xref: EHDAA2:0004623 +xref: EHDAA:5567 +xref: EHDAA:6644 +xref: EMAPA:17569 +xref: FMA:53414 +xref: GAID:718 +xref: Geniculate:ganglion +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1535 +xref: http://linkedlifedata.com/resource/umls/id/C0017406 +xref: http://www.snomedbrowser.com/Codes/Details/279076005 +xref: MA:0001076 +xref: MESH:D005830 +xref: NCIT:C12721 +xref: TAO:0001291 +xref: UMLS:C0017406 {source="ncithesaurus:Geniculate_Ganglion"} +xref: VHOG:0000707 +xref: ZFA:0001291 +is_a: UBERON:0001800 {source="ncithesaurus"} ! sensory ganglion +is_a: UBERON:0009127 ! epibranchial ganglion +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0001714 ! cranial ganglion +intersection_of: extends_fibers_into UBERON:0001647 ! facial nerve +relationship: develops_from UBERON:0009124 {source="EHDAA2:0004623", source="ZFA"} ! geniculate placode +relationship: develops_from UBERON:0010258 {source="EHDAA2:0004623"} ! mesenchyme from rhombencephalic neural crest +relationship: develops_from UBERON:0012175 {source="EHDAA2:0000491"} ! acoustico-facial VII-VIII ganglion complex +relationship: extends_fibers_into UBERON:0001647 ! facial nerve + +[Term] +id: UBERON:0001701 +name: glossopharyngeal ganglion +def: "The group of neuron cell bodies associated with the ninth cranial nerve." [MP:0001096] +subset: pheno_slim +subset: vertebrate_core +synonym: "ganglion of glossopharyngeal nerve" EXACT [] +synonym: "ganglion of glosspharyngeal nerve" EXACT [FMA:53471] +synonym: "gIX" RELATED [] +synonym: "glossopharyngeal IX ganglion" EXACT [MA:0001077] +synonym: "petrosal ganglion" NARROW [ZFA:0001301] +xref: EHDAA2:0000710 +xref: EHDAA:2838 +xref: EMAPA:16795 +xref: FMA:53471 +xref: http://www.snomedbrowser.com/Codes/Details/244451008 +xref: MA:0001077 +xref: TAO:0001301 +xref: VHOG:0000702 +xref: ZFA:0001301 +is_a: UBERON:0009127 {source="ZFA"} ! epibranchial ganglion +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001714 ! cranial ganglion +intersection_of: extends_fibers_into UBERON:0001649 ! glossopharyngeal nerve +relationship: extends_fibers_into UBERON:0001649 ! glossopharyngeal nerve +relationship: has_developmental_contribution_from UBERON:0005491 {notes="dorsal", source="EHDAA2", source="ISBN:0471888893", source="ZFA"} ! glossopharyngeal neural crest +relationship: has_developmental_contribution_from UBERON:0009125 {notes="ventrolateral", source="EHDAA2", source="ISBN:0471888893", source="ZFA"} ! petrosal placode + +[Term] +id: UBERON:0001702 +name: eyelash +def: "Any of the hairs that grow at the edge of the upper or lower eyelid." [MGI:anna] +subset: pheno_slim +subset: uberon_slim +synonym: "blepharis" RELATED [] +synonym: "cilia" RELATED LATIN [http://en.wikipedia.org/wiki/Eyelash] +synonym: "cilium" RELATED LATIN [http://en.wikipedia.org/wiki/Eyelash] +synonym: "eyelid cilia" RELATED PLURAL [] +synonym: "eyelid cilium" EXACT [] +synonym: "hair of eyelid" RELATED [] +xref: FMA:53669 +xref: GAID:73 +xref: http://en.wikipedia.org/wiki/Eyelash +xref: http://linkedlifedata.com/resource/umls/id/C0015422 +xref: http://www.snomedbrowser.com/Codes/Details/244201001 +xref: MA:0002702 +xref: MESH:D005140 +xref: NCIT:C32576 +xref: OpenCyc:Mx4rvVi41pwpEbGdrcN5Y29ycA +xref: UMLS:C0015422 {source="ncithesaurus:Eyelash"} +is_a: UBERON:0001037 ! strand of hair +relationship: attaches_to UBERON:0001711 ! eyelid +relationship: fma_set_term FMA:70742 + +[Term] +id: UBERON:0001703 +name: neurocranium +def: "Subdivision of skeletal system that surrounds and protects the brain. Includes the skull base, sensory capsules and the central part of the skull roof." [http://en.wikipedia.org/wiki/Neuroranium, http://www.ncbi.nlm.nih.gov/pubmed/11523816, TAO:MAH, ZFA:0001580] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "brain box" EXACT [] +synonym: "brain case" RELATED [ZFA:0001580] +synonym: "brain pan" RELATED [http://www.thefreedictionary.com/braincase] +synonym: "braincase" RELATED [ZFA:0001580] +xref: AAO:0010153 +xref: EHDAA2:0000243 +xref: EMAPA:17681 +xref: FMA:53672 +xref: http://en.wikipedia.org/wiki/Neuroranium +xref: http://www.snomedbrowser.com/Codes/Details/361731002 +xref: MA:0000317 +xref: TAO:0001580 +xref: XAO:0003170 +xref: ZFA:0001580 +is_a: UBERON:0011158 {source="FMA"} ! primary subdivision of skull +relationship: develops_from UBERON:0004761 ! cartilaginous neurocranium +relationship: location_of UBERON:0000955 ! brain +relationship: part_of UBERON:0003128 ! cranium +relationship: protects UBERON:0000955 ! brain + +[Term] +id: UBERON:0001704 +name: obsolete viscerocranium +def: "." [http://en.wikipedia.org/wiki/Facial_skeleton] +xref: Facial:skeleton +is_obsolete: true +consider: UBERON:0008895 +consider: UBERON:0011156 + +[Term] +id: UBERON:0001705 +name: nail +def: "A horn-like keratin structure covering the dorsal aspect of the terminal phalanges of fingers and toes[WP]." [http://en.wikipedia.org/wiki/Nail_(anatomy), https://github.com/obophenotype/uberon/issues/120] +comment: The nails of humans and the claws are moth are highly similar. Both species have a proximal nail fold, cuticle, nail matrix, nail bed, nail plate, and hyponychium. Distinguishing features are the shape of the nail and the presence of an extended hyponychium in the mouse [PMC3579226] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "claw" NARROW SENSU [http://en.wikipedia.org/wiki/Claw] +synonym: "nail/claw" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "talon" RELATED [] +xref: BTO:0001719 +xref: CALOHA:TS-2034 +xref: EFO:0000956 +xref: EMAPA:35580 +xref: EV:0100159 +xref: FMA:54326 +xref: GAID:1320 +xref: galen:Nail +xref: http://linkedlifedata.com/resource/umls/id/C0027342 +xref: http://www.snomedbrowser.com/Codes/Details/72651009 +xref: MA:0002703 +xref: MAT:0000158 +xref: MESH:D009262 +xref: MIAA:0000158 +xref: Nail:(anatomy) +xref: NCIT:C33156 +xref: OpenCyc:Mx4rvVjJv5wpEbGdrcN5Y29ycA +xref: UMLS:C0027342 {source="ncithesaurus:Nail"} +xref: VHOG:0001361 +xref: XAO:0003103 +is_a: UBERON:0009564 ! distal limb integumentary appendage +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly + +[Term] +id: UBERON:0001706 +name: nasal septum +def: "The nasal septum separates the left and right airways in the nose, dividing the two nostrils. It is depressed by the Depressor septi nasi muscle. [WP,unvetted]." [http://en.wikipedia.org/wiki/Nasal_septum] +subset: pheno_slim +subset: uberon_slim +synonym: "septal cartilage" RELATED [http://en.wikipedia.org/wiki/Nasal_septum] +synonym: "septum mobile nasi" RELATED [http://en.wikipedia.org/wiki/Nasal_septum] +synonym: "septum nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Nasal_septum] +synonym: "septum nasi" RELATED [http://en.wikipedia.org/wiki/Nasal_septum] +synonym: "septum of the nose" RELATED [http://en.wikipedia.org/wiki/Nasal_septum] +xref: AAO:0000559 +xref: AAO:0010135 +xref: EHDAA2:0001234 +xref: EHDAA2:0004104 +xref: EHDAA:6809 +xref: EMAPA:17608 +xref: FMA:54375 +xref: GAID:115 +xref: http://linkedlifedata.com/resource/umls/id/C0027432 +xref: http://www.snomedbrowser.com/Codes/Details/181197004 +xref: MA:0000285 +xref: MESH:A02.165.639 +xref: Nasal:septum +xref: NCIT:C33160 +xref: OpenCyc:Mx4rv7e-k5wpEbGdrcN5Y29ycA +xref: UMLS:C0027432 {source="ncithesaurus:Nasal_Septum"} +xref: VHOG:0000017 +is_a: UBERON:0003037 ! septum +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: contributes_to_morphology_of UBERON:0000004 ! nose +relationship: develops_from UBERON:0009714 {source="EHDAA2-abduced"} ! intermaxillary process +relationship: part_of UBERON:0006813 {source="AAO"} ! nasal skeleton +relationship: part_of UBERON:0011241 {source="AAO"} ! ethmoid region + +[Term] +id: UBERON:0001707 +name: nasal cavity +def: "An anatomical cavity that is part of the olfactory apparatus. This includes the space bounded anteriorly by the nares and posteriorly by the choanae, when these structures are present." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "cavitas nasalis" RELATED [BTO:0002096] +synonym: "cavitas nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Nasal_cavity] +synonym: "cavitas nasi" RELATED [BTO:0002096] +synonym: "cavity of nose" EXACT [] +synonym: "cavity of olfactory apparatus" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "cavum nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Nasal_cavity] +synonym: "nasal canal" EXACT [ZFA:0000130] +synonym: "nasal conduit space" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "nasal fossa" EXACT [http://en.wikipedia.org/wiki/Nasal_cavity] +synonym: "nasal pit" RELATED [] +synonym: "olfactory cavity" RELATED [] +synonym: "olfactory chamber" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "olfactory chamber cavity" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "olfactory pit" RELATED INCONSISTENT [ZFA:0000130] +xref: AAO:0000314 +xref: BTO:0002096 +xref: EHDAA2:0001226 +xref: EHDAA:6801 +xref: EMAPA:17604 +xref: FMA:54378 +xref: GAID:350 +xref: http://linkedlifedata.com/resource/umls/id/C0027423 +xref: http://www.snomedbrowser.com/Codes/Details/263481003 +xref: MA:0000284 +xref: MESH:D009296 +xref: Nasal:cavity +xref: NCIT:C12424 +xref: TAO:0000130 +xref: UMLS:C0027423 {source="ncithesaurus:Nasal_Cavity"} +xref: VHOG:0000271 +xref: ZFA:0000130 +is_a: UBERON:0002553 ! anatomical cavity +relationship: develops_from UBERON:0005870 ! olfactory pit +relationship: part_of UBERON:0015788 {source="cjm"} ! olfactory apparatus chamber + +[Term] +id: UBERON:0001708 +name: jaw skeleton +def: "Subdivision of skeleton which includes upper and lower jaw skeletons." [http://en.wikipedia.org/wiki/Jaw, https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "anterior splanchnocranium" RELATED [] +synonym: "jaw" EXACT [MA:0001905] +synonym: "jaw cartilage" EXACT [ZFA:0001227] +synonym: "jaws" RELATED [] +synonym: "mandibular arch" RELATED [TAO:0001227] +synonym: "mandibular arch skeleton" EXACT [ZFA:0001227] +synonym: "oral jaw skeleton" RELATED [] +synonym: "pharyngeal arch 1 skeleton" RELATED [] +synonym: "visceral arch 1" RELATED [] +xref: AAO:0000988 +xref: BTO:0001749 +xref: EMAPA:35455 +xref: FMA:54396 +xref: GAID:214 +xref: galen:Jaw +xref: http://en.wikipedia.org/wiki/Jaw +xref: http://linkedlifedata.com/resource/umls/id/C0022359 +xref: http://www.snomedbrowser.com/Codes/Details/181811001 +xref: MA:0001905 +xref: MESH:D007568 +xref: NCIT:C48821 +xref: OpenCyc:Mx4rvVjjEZwpEbGdrcN5Y29ycA +xref: TAO:0001227 +xref: UMLS:C0022359 {source="ncithesaurus:Jaw"} +xref: ZFA:0001227 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010912 ! subdivision of skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0011595 ! jaw region +relationship: part_of UBERON:0011156 {source="cjm"} ! facial skeleton +relationship: part_of UBERON:0011595 ! jaw region +relationship: skeleton_of UBERON:0011595 ! jaw region + +[Term] +id: UBERON:0001709 +name: upper jaw region +def: "Subdivision of head that consists of the upper jaw skeletal elements plus associated soft tissue (skin, lips, muscle)[cjm]." [http://en.wikipedia.org/wiki/Upper_jaw, http://orcid.org/0000-0002-6601-2165] +comment: See notes for jaw w.r.t skeletal element vs subdivision of head. +subset: uberon_slim +subset: vertebrate_core +synonym: "alveolodental arch of bimaxilla" RELATED [FMA:59399] +synonym: "dorsal mandibular arch" RELATED [] +synonym: "dorsal pharyngeal arch 1" RELATED INCONSISTENT [] +synonym: "maxillary part of mouth" EXACT [FMA:59399] +synonym: "maxillary part of mouth proper" RELATED [FMA:59399] +synonym: "palatoquadrate arch" RELATED INCONSISTENT [] +synonym: "upper pharyngeal jaws" RELATED [] +xref: AAO:0000620 +xref: EHDAA2:0002118 +xref: EHDAA2:0004607 +xref: EHDAA:8025 +xref: EMAPA:17924 +xref: FMA:59399 +xref: http://www.snomedbrowser.com/Codes/Details/362636001 +xref: ncithesaurus:Upper_Jaw +xref: Upper:jaw +xref: VHOG:0000454 +is_a: UBERON:0000475 ! organism subdivision +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000475 ! organism subdivision +intersection_of: has_skeleton UBERON:0003277 ! skeleton of upper jaw +disjoint_from: UBERON:0001710 ! lower jaw region +relationship: has_skeleton UBERON:0003277 ! skeleton of upper jaw +relationship: part_of UBERON:0004089 ! midface +relationship: part_of UBERON:0011595 ! jaw region + +[Term] +id: UBERON:0001710 +name: lower jaw region +def: "Subdivision of head that consists of the lower jaw skeletal elements plus associated soft tissue (skin, lips, muscle)[cjm]." [http://en.wikipedia.org/wiki/Lower_jaw] +comment: See notes for jaw w.r.t skeletal element vs subdivision of head +subset: efo_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "lower part of mouth" RELATED [] +synonym: "mandibular part of mouth" EXACT [FMA:59398] +synonym: "mandibular series" RELATED [] +xref: AAO:0000272 +xref: EFO:0003660 +xref: EHDAA2:0001018 +xref: EHDAA:7995 +xref: EMAPA:17906 +xref: FMA:59398 +xref: http://www.snomedbrowser.com/Codes/Details/362637005 +xref: Lower:jaw +xref: MESH:D008334 +xref: ncithesaurus:Lower_Jaw +xref: VHOG:0000453 +is_a: UBERON:0000475 ! organism subdivision +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000475 ! organism subdivision +intersection_of: has_skeleton UBERON:0003278 ! skeleton of lower jaw +relationship: develops_from UBERON:0005867 {source="Mandibular:prominence"} ! mandibular prominence +relationship: has_skeleton UBERON:0003278 ! skeleton of lower jaw +relationship: part_of UBERON:0011595 ! jaw region + +[Term] +id: UBERON:0001711 +name: eyelid +def: "A fold of skin that covers and protects part of the eyeball. Examples: upper eyelid, lower eyelid, nictitating membrane" [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "blephara" RELATED PLURAL [] +synonym: "blepharon" EXACT [] +synonym: "eye lid" EXACT [] +synonym: "palpebra" EXACT [] +synonym: "palpebrae" RELATED PLURAL [] +xref: BTO:0002241 +xref: EHDAA2:0000487 +xref: EHDAA:9037 +xref: EMAPA:17829 +xref: EV:0100338 +xref: FMA:54437 +xref: GAID:72 +xref: http://en.wikipedia.org/wiki/Eyelid +xref: http://linkedlifedata.com/resource/umls/id/C0015426 +xref: http://www.snomedbrowser.com/Codes/Details/265782007 +xref: MA:0000268 +xref: MESH:D005143 +xref: NCIT:C12713 +xref: OpenCyc:Mx4rvVi4m5wpEbGdrcN5Y29ycA +xref: UMLS:C0015426 {source="ncithesaurus:Eyelid"} +xref: VHOG:0000016 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: contributes_to_morphology_of UBERON:0000019 ! camera-type eye +relationship: fma_set_term FMA:75178 +relationship: part_of UBERON:0000019 {source="multiple"} ! camera-type eye +relationship: protects UBERON:0010409 ! ocular surface region + +[Term] +id: UBERON:0001712 +name: upper eyelid +subset: pheno_slim +subset: uberon_slim +synonym: "palpebra superior" EXACT LATIN [FMA:54439, FMA:TA] +synonym: "superior eyelid" EXACT [] +xref: EHDAA2:0002115 +xref: EHDAA:9047 +xref: EMAPA:17834 +xref: FMA:54439 +xref: http://linkedlifedata.com/resource/umls/id/C0585636 +xref: http://www.snomedbrowser.com/Codes/Details/244499008 +xref: MA:0001267 +xref: NCIT:C49581 +xref: OpenCyc:Mx4rvg4ohJwpEbGdrcN5Y29ycA +xref: UMLS:C0585636 {source="ncithesaurus:Upper_Eyelid"} +xref: VHOG:0000389 +is_a: UBERON:0001711 ! eyelid + +[Term] +id: UBERON:0001713 +name: lower eyelid +subset: pheno_slim +subset: uberon_slim +synonym: "inferior eyelid" EXACT [] +synonym: "palpebra inferior" EXACT LATIN [FMA:54442, FMA:TA] +xref: AAO:0010349 +xref: EHDAA2:0001015 +xref: EHDAA:9041 +xref: EMAPA:17831 +xref: FMA:54442 +xref: http://linkedlifedata.com/resource/umls/id/C0229258 +xref: http://www.snomedbrowser.com/Codes/Details/362528002 +xref: MA:0001263 +xref: NCIT:C49580 +xref: OpenCyc:Mx4rvW6GtJwpEbGdrcN5Y29ycA +xref: UMLS:C0229258 {source="ncithesaurus:Lower_Eyelid"} +xref: VHOG:0000388 +xref: XAO:0000007 +is_a: UBERON:0001711 ! eyelid + +[Term] +id: UBERON:0001714 +name: cranial ganglion +alt_id: UBERON:0003213 +alt_id: UBERON:0026601 +def: "the groups of nerve cell bodies associated with the twelve cranial nerves" [http://www.ncbi.nlm.nih.gov/pubmed/9362461, ISBN:0-683-40008-8, MGI:csmith, MP:0001081] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "cranial ganglia" RELATED [] +synonym: "cranial ganglion" EXACT [] +synonym: "cranial ganglion part of peripheral nervous system" EXACT [BIRNLEX:2597] +synonym: "cranial ganglion/nerve" EXACT [] +synonym: "cranial nerve ganglion" EXACT [] +synonym: "cranial neural ganglion" EXACT [] +synonym: "cranial neural tree organ ganglion" EXACT [OBOL:automatic] +synonym: "ganglion of cranial nerve" EXACT [FMA:54502] +synonym: "ganglion of cranial neural tree organ" EXACT [OBOL:automatic] +synonym: "head ganglion" RELATED [] +synonym: "presumptive cranial ganglia" RELATED [ZFA:0000013] +xref: BIRNLEX:2597 +xref: BTO:0000106 +xref: EFO:0000902 +xref: EMAPA:16659 +xref: FMA:54502 +xref: http://en.wikipedia.org/wiki/Cranial_nerve_ganglion +xref: http://www.snomedbrowser.com/Codes/Details/244448001 +xref: MA:0000213 +xref: MA:0000214 +xref: MAT:0000200 +xref: MIAA:0000200 +xref: TAO:0000013 +xref: VHOG:0000076 +xref: XAO:0000027 +xref: ZFA:0000013 +is_a: UBERON:0000045 ! ganglion +intersection_of: UBERON:0000045 ! ganglion +intersection_of: extends_fibers_into UBERON:0034713 ! cranial neuron projection bundle +relationship: extends_fibers_into UBERON:0034713 ! cranial neuron projection bundle +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0001715 +name: oculomotor nuclear complex +def: "Nuclear complex containing subnuclei that give rise to the axons of the occulomotor nerve, both motor and parasympathetic fibers, situated at the midline at the level of the superior colliculus in the midbrain tegmentum (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 533-534)." [BIRNLEX:1240] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "motor nucleus III" RELATED [] +synonym: "nIII" RELATED [] +synonym: "nucleus nervi oculomotorii" EXACT LATIN [FMA:54510, FMA:TA] +synonym: "nucleus nervi oculomotorii" EXACT [FMA:TA] +synonym: "nucleus oculomotorius" RELATED LATIN [NeuroNames:492] +synonym: "nucleus of oculomotor nerve" EXACT [FMA:54510] +synonym: "nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "nucleus of third cranial nerve" EXACT [FMA:54510] +synonym: "oculomotor III nuclear complex" EXACT [] +synonym: "oculomotor III nucleus" EXACT [MA:0001073] +synonym: "oculomotor motornucleus" RELATED [XAO:0004389] +synonym: "oculomotor nucleus" EXACT [FMA:54510] +synonym: "OM" EXACT ABBREVIATION [XAO:0004389] +synonym: "third cranial nerve nucleus" EXACT [FMA:54510] +xref: BAMS:3 +xref: BAMS:III +xref: BIRNLEX:1240 +xref: BM:MB-III +xref: DHBA:12198 +xref: EFO:0002468 +xref: EHDAA2:0004211 +xref: EMAPA:35605 +xref: EV:0100250 +xref: FMA:54510 +xref: HBA:9030 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=492 {source="BIRNLEX:1240"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=492 +xref: http://en.wikipedia.org/wiki/Nucleus_of_oculomotor_nerve +xref: http://linkedlifedata.com/resource/umls/id/C0228686 +xref: http://www.snomedbrowser.com/Codes/Details/362457000 +xref: MA:0001073 +xref: MBA:35 +xref: NCIT:C12897 +xref: TAO:0000553 +xref: UMLS:C0228686 {source="ncithesaurus:Oculomotor_Nucleus"} +xref: UMLS:C0228686 {source="BIRNLEX:1240"} +xref: VHOG:0001389 +xref: XAO:0004389 +xref: ZFA:0000553 +is_a: UBERON:0007245 {source="FMA"} ! nuclear complex of neuraxis +is_a: UBERON:0019267 ! gray matter of midbrain +relationship: fma_set_term FMA:84019 +relationship: part_of UBERON:0001943 {source="ZFA"} ! midbrain tegmentum + +[Term] +id: UBERON:0001716 +name: secondary palate +def: "The part of the palate formed from the fusion of the two palatine shelves, extensions of the maxillary prominences." [http://en.wikipedia.org/wiki/Secondary_palate, http://www.indiana.edu/~anat550/hnanim/face/face.html] +subset: pheno_slim +subset: uberon_slim +synonym: "definitive palate" EXACT [EMAPA:18948] +synonym: "oral roof" EXACT [] +synonym: "palate" BROAD SENSU [EMAPA:18948, GO:0060021, MA:0002476] +synonym: "palatum" BROAD [] +synonym: "palatum" RELATED LATIN [http://en.wikipedia.org/wiki/Palate] +synonym: "palatum definitivum" EXACT LATIN [http://en.wikipedia.org/wiki/Secondary_palate] +synonym: "palatum secundarium" EXACT LATIN [http://en.wikipedia.org/wiki/Secondary_palate] +synonym: "roof of mouth" RELATED [] +xref: BTO:0001779 +xref: EMAPA:18948 +xref: FMA:54549 +xref: GAID:152 +xref: galen:Palate +xref: http://linkedlifedata.com/resource/umls/id/C0700374 +xref: http://linkedlifedata.com/resource/umls/id/C1519217 +xref: http://www.snomedbrowser.com/Codes/Details/181227004 +xref: MA:0002476 +xref: MESH:D010159 +xref: NCIT:C12229 +xref: NCIT:C34292 +xref: Secondary:palate +xref: UMLS:C0700374 {source="ncithesaurus:Palate"} +xref: UMLS:C1519217 {source="ncithesaurus:Secondary_Palate"} +is_a: UBERON:0007375 ! roof of mouth +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: adjacent_to UBERON:0000167 ! oral cavity +relationship: adjacent_to UBERON:0001707 ! nasal cavity +relationship: develops_from UBERON:0005619 {notes="fusion", source="http://www.indiana.edu/~anat550/hnanim/face/face.html"} ! secondary palatal shelf +relationship: part_of UBERON:0001709 {source="EMAPA"} ! upper jaw region + +[Term] +id: UBERON:0001717 +name: spinal nucleus of trigeminal nerve +def: "Nucleus extending from the upper spinal cord through the pontine tegmentum that receives sensory inputs from the trigeminal nerve. It is continuous caudally with the dorsal gray matter of the spinal cord." [NLX:12995] +subset: uberon_slim +synonym: "nucleus spinalis nervi trigemini" RELATED LATIN [http://en.wikipedia.org/wiki/Spinal_trigeminal_nucleus] +synonym: "spinal nucleus of cranial nerve v" EXACT [] +synonym: "spinal nucleus of the trigeminal" RELATED [BAMS:SPV] +synonym: "spinal trigeminal nucleus" EXACT [GO:0021741] +synonym: "trigeminal nerve spinal tract nucleus" EXACT [] +synonym: "trigeminal spinal nucleus" EXACT [] +synonym: "trigeminal spinal sensory nucleus" RELATED [EMAPA:35885] +synonym: "trigeminal v spinal sensory nucleus" EXACT [] +xref: BAMS:Sp5 +xref: BAMS:SPV +xref: BM:VSp +xref: DHBA:12572 +xref: EMAPA:35885 +xref: FMA:54565 +xref: GAID:605 +xref: HBA:9676 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1732 +xref: http://en.wikipedia.org/wiki/Spinal_trigeminal_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0041000 +xref: http://www.snomedbrowser.com/Codes/Details/369033006 +xref: MA:0001053 +xref: MESH:D014279 +xref: NCIT:C33188 +xref: NLX:12995 +xref: UMLS:C0041000 {source="ncithesaurus:Nucleus_of_the_Spinal_Tract_of_the_Trigeminal_Nerve"} +xref: VHOG:0001357 +is_a: UBERON:0004132 {source="MA"} ! trigeminal sensory nucleus +is_a: UBERON:0007635 ! nucleus of medulla oblongata + +[Term] +id: UBERON:0001718 +name: mesencephalic nucleus of trigeminal nerve +def: "Elongated nucleus located in the midbrain tegmentum that receives proprioceptive input from both teh extraocular and the masticatory muscles. Contrary to the general rule, the cell bodies that give rise to these sensory fibers are located within the mesencephalic nucleus rather than in a peripheral ganglion. Some of the sensory fibers in the mesencephalic root give off collaterals to the trigeminal motor nucleus, thereby providing the anatomic basis for the monosynaptic jaw reflex. (Heimer, L. The Human Brain and Spinal Cord, 2nd ed. 1996, page 248)." [BIRNLEX:1010] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "Me5" BROAD ABBREVIATION [BIRNLEX:1010, NIFSTD:NeuroNames_abbrevSource] +synonym: "Me5" BROAD [BIRNLEX:1010] +synonym: "mesencephalic nuclei of trigeminal nerves" RELATED PLURAL [ZFA:0000312] +synonym: "mesencephalic nucleus" BROAD [http://en.wikipedia.org/wiki/Mesencephalic_nucleus_of_trigeminal_nerve] +synonym: "mesencephalic nucleus of the trigeminal" RELATED [BAMS:MEV] +synonym: "mesencephalic nucleus of the trigeminal nerve" RELATED [NeuroNames:558] +synonym: "mesencephalic trigeminal nucleus" EXACT [GO:0021739] +synonym: "mesencephalic trigeminal V nucleus" EXACT [] +synonym: "midbrain trigeminal nucleus" RELATED [NeuroNames:558] +synonym: "nucleus mesencephalicus nervi trigeminalis" RELATED LATIN [NeuroNames:558] +synonym: "nucleus mesencephalicus nervi trigemini" RELATED LATIN [http://en.wikipedia.org/wiki/Mesencephalic_nucleus_of_trigeminal_nerve] +synonym: "nucleus of mesencephalic root of v" EXACT [] +synonym: "nucleus tractus mesencephalici nervi trigemini" RELATED LATIN [NeuroNames:558] +synonym: "nucleus tractus mesencephalicus nervi trigemini" RELATED LATIN [NeuroNames:558] +synonym: "trigeminal mesencephalic nucleus" EXACT [] +synonym: "trigeminal nerve mesencepahlic nucleus" EXACT [] +synonym: "trigeminal V mesencephalic nucleus" EXACT [MA:0001057] +xref: BAMS:Me5 +xref: BAMS:MEV +xref: BIRNLEX:1010 +xref: BM:Pons-5ME +xref: DHBA:12208 +xref: EMAPA:35881 +xref: EV:0100252 +xref: FMA:54568 +xref: HBA:9205 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=558 {source="BIRNLEX:1010"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=558 +xref: http://en.wikipedia.org/wiki/Mesencephalic_nucleus_of_trigeminal_nerve +xref: http://linkedlifedata.com/resource/umls/id/C0228702 +xref: http://www.snomedbrowser.com/Codes/Details/369032001 +xref: MA:0001057 +xref: MBA:460 +xref: TAO:0000312 +xref: UMLS:C0228702 {source="BIRNLEX:1010"} +xref: VHOG:0001354 +xref: ZFA:0000312 +is_a: UBERON:0004132 ! trigeminal sensory nucleus +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus +relationship: part_of UBERON:0001943 {source="NIF"} ! midbrain tegmentum + +[Term] +id: UBERON:0001719 +name: nucleus ambiguus +def: "A region of histologically disparate cells located just dorsal to the inferior olivary nucleus in the lateral portion of the upper medulla. It receives upper motor neuron innervation directly via the corticobulbar tract This nucleus gives rise to the efferent motor fibers of the vagus nerve terminating in the laryngeal and pharyngeal muscles, as well as to the efferent motor fibers of the glossopharyngeal nerve (CN IX) terminating in the stylopharyngeus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Nucleus_ambiguus] +subset: uberon_slim +synonym: "Amb" BROAD ABBREVIATION [BIRNLEX:2650, NIFSTD:NeuroNames_abbrevSource] +synonym: "ambiguous nucleus" RELATED [NeuroNames:765] +synonym: "ambiguus nucleus" EXACT [] +synonym: "nucleus innominatus" RELATED LATIN [NeuroNames:765] +xref: BAMS:AMB +xref: BAMS:Amb +xref: BIRNLEX:2650 +xref: BM:Me-AMB +xref: DHBA:12540 +xref: EHDAA2:0004305 +xref: EMAPA:35596 +xref: EV:0100292 +xref: FMA:54588 +xref: HBA:9516 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=765 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=765 {source="BIRNLEX:2650"} +xref: http://linkedlifedata.com/resource/umls/id/C0152400 +xref: http://linkedlifedata.com/resource/umls/id/C1281211 +xref: http://www.snomedbrowser.com/Codes/Details/280184006 +xref: MA:0001050 +xref: MBA:135 +xref: NCIT:C12835 +xref: Nucleus:ambiguus +xref: UMLS:C0152400 {source="BIRNLEX:2650"} +xref: UMLS:C0152400 {source="ncithesaurus:Nucleus_Ambiguus"} +xref: UMLS:C1281211 {source="BIRNLEX:2650"} +is_a: UBERON:0007635 ! nucleus of medulla oblongata +is_a: UBERON:0011775 {source="Wikipedia"} ! vagus nerve nucleus +relationship: develops_from UBERON:0010126 ! future nucleus ambiguus +relationship: immediate_transformation_of UBERON:0010126 {evidence="definitional"} ! future nucleus ambiguus + +[Term] +id: UBERON:0001720 +name: cochlear nucleus +def: "Any of the nuclei of the cochlear nuclear complex." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "cochlear nucleus of acoustic nerve" EXACT [] +synonym: "cochlear nucleus of eighth cranial nerve" EXACT [] +synonym: "cochlear VIII nucleus" EXACT [MA:0001012] +synonym: "nucleus of cochlear nerve" EXACT [] +synonym: "statoacoustic (VIII) nucleus" EXACT [] +synonym: "vestibulocochlear nucleus" RELATED [] +xref: Cochlear:nucleus +xref: EMAPA:35248 +xref: FMA:54603 +xref: GAID:601 +xref: http://www.snomedbrowser.com/Codes/Details/362463009 +xref: MA:0001012 +xref: MESH:D017626 +xref: NCIT:C12837 +xref: TAO:0002243 +xref: ZFA:0001638 +is_a: UBERON:0007635 ! nucleus of medulla oblongata +intersection_of: UBERON:0000125 ! neural nucleus +intersection_of: part_of UBERON:0002610 ! cochlear nuclear complex +relationship: contributes_to_morphology_of UBERON:0002298 ! brainstem +relationship: extends_fibers_into UBERON:0004727 ! cochlear nerve +relationship: part_of UBERON:0002610 ! cochlear nuclear complex + +[Term] +id: UBERON:0001721 +name: inferior vestibular nucleus +def: "The inferior vestibular nucleus is the vestibular nucleus which lies near the fourth ventricle. [WP,unvetted]." [http://en.wikipedia.org/wiki/Inferior_vestibular_nucleus] +subset: uberon_slim +synonym: "descending vestibular nucleus" EXACT [FMA:54608] +synonym: "nucleus vestibularis inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_vestibular_nucleus] +synonym: "spinal vestibular nucleus" EXACT [FMA:54608] +xref: BAMS:IVe +xref: BAMS:SPIV +xref: BAMS:SpVe +xref: BAMS:SPVN +xref: BM:Me-VS-VSI +xref: BTO:0004369 +xref: EMAPA:35797 +xref: EV:0100258 +xref: FMA:54608 +xref: HBA:9702 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=718 +xref: http://en.wikipedia.org/wiki/Inferior_vestibular_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0175498 +xref: http://www.snomedbrowser.com/Codes/Details/280175006 +xref: MA:0001054 +xref: MBA:225 +xref: NCIT:C33591 +xref: UMLS:C0175498 {source="ncithesaurus:Spinal_Vestibular_Nucleus"} +is_a: UBERON:0007228 ! vestibular nucleus + +[Term] +id: UBERON:0001722 +name: medial vestibular nucleus +def: "The medial vestibular nucleus is one of the vestibular nuclei. It is located in the medulla oblongata. Lateral vestibulo-spinal tract (lateral vestibular nucleus 'Deiters')- via ventrolateral medulla and spinal cord to ventral funiculus (lumbo-sacral segments). Ipsilaterally for posture Medial vestibulo-spinal tract (medial, lateral, inferior, vestibular nuclei), bilateral projection via descending medial longitudinal fasciculus to cervical segments. DESCENDING MLF. Bilaterally for head/neck/eye movements [WP,unvetted]." [http://en.wikipedia.org/wiki/Medial_vestibular_nucleus] +subset: uberon_slim +synonym: "chief vestibular nucleus" EXACT [FMA:54611] +synonym: "dorsal vestibular nucleus" EXACT [FMA:54611] +synonym: "medial nucleus" RELATED [http://en.wikipedia.org/wiki/Medial_vestibular_nucleus] +synonym: "nucleus of Schwalbe" EXACT [FMA:54611] +synonym: "nucleus triangularis" EXACT LATIN [FMA:54611, FMA:TA] +synonym: "nucleus vestibularis medialis" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_vestibular_nucleus] +synonym: "principal vestibular nucleus" EXACT [FMA:54611] +synonym: "Schwalbe's nucleus" EXACT [FMA:54611] +synonym: "triangular nucleus" EXACT [FMA:54611] +xref: BAMS:MV +xref: BAMS:MVe +xref: BAMS:MVN +xref: BAMS:VMN +xref: BM:Me-VS-VSM +xref: BTO:0004371 +xref: DHBA:12581 +xref: EMAPA:35554 +xref: FMA:54611 +xref: HBA:9700 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=717 +xref: http://en.wikipedia.org/wiki/Medial_vestibular_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0036385 +xref: http://www.snomedbrowser.com/Codes/Details/280174005 +xref: MA:0001048 +xref: MBA:202 +xref: NCIT:C33069 +xref: PBA:10125 +xref: UMLS:C0036385 {source="ncithesaurus:Medial_Vestibular_Nucleus"} +is_a: UBERON:0007228 ! vestibular nucleus +disjoint_from: UBERON:0007230 {source="lexical"} ! lateral vestibular nucleus + +[Term] +id: UBERON:0001723 +name: tongue +def: "A muscular organ in the floor of the mouth." [FEED:rd, https://github.com/obophenotype/uberon/issues/256] +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "glossus" RELATED [http://en.wikipedia.org/wiki/Tongue] +xref: AAO:0010360 +xref: BTO:0001385 +xref: CALOHA:TS-1050 +xref: EFO:0000833 +xref: EHDAA2:0002062 +xref: EHDAA:9144 +xref: EMAPA:17185 +xref: EV:0100058 +xref: FMA:54640 +xref: GAID:816 +xref: http://en.wikipedia.org/wiki/Tongue +xref: http://linkedlifedata.com/resource/umls/id/C0040408 +xref: http://www.snomedbrowser.com/Codes/Details/181226008 +xref: MA:0000347 +xref: MAT:0000040 +xref: MESH:D014059 +xref: MIAA:0000040 +xref: NCIT:C12422 +xref: OpenCyc:Mx4rvVjmJ5wpEbGdrcN5Y29ycA_53KXLq9EdqAAAACs6hnmQ +xref: TAO:0005333 +xref: UMLS:C0040408 {source="ncithesaurus:Tongue"} +xref: VHOG:0000419 +xref: XAO:0000446 +xref: ZFA:0005333 +is_a: UBERON:0000020 {source="GO"} ! sense organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0013765 ! digestive system element +relationship: adjacent_to UBERON:0000166 ! oral opening +relationship: contributes_to_morphology_of UBERON:0001007 ! digestive system +relationship: develops_from UBERON:0008814 ! pharyngeal arch system +relationship: develops_from UBERON:0010056 ! future tongue +relationship: has_developmental_contribution_from UBERON:0006260 {notes="anterior 2/3"} ! lingual swellings +relationship: has_developmental_contribution_from UBERON:0006756 {source="Wikipedia"} ! median lingual swelling +relationship: has_developmental_contribution_from UBERON:0006757 {source="Wikipedia"} ! lateral lingual swelling +relationship: immediate_transformation_of UBERON:0010056 {evidence="definitional"} ! future tongue +relationship: part_of UBERON:0000165 {source="BTO", source="EHDAA2", source="FMA", source="ZFA"} ! mouth +relationship: part_of UBERON:0001033 {source="MA"} ! gustatory system + +[Term] +id: UBERON:0001724 +name: sphenoidal sinus +def: "One of the paired paranasal sinuses, located in the body of the sphenoid bone and communicating with the highest meatus of the nasal cavity on the same side[MESH]. The sphenoidal sinuses (or sphenoid) contained within the body of the sphenoid vary in size and shape; owing to the lateral displacement of the intervening septum they are rarely symmetrical. The following are their average measurements: vertical height, 2.2 cm. ; transverse breadth, 2 cm. ; antero-posterior depth, 2.2 cm. [WP,unvetted]." [http://en.wikipedia.org/wiki/Sphenoidal_sinus, MESH:A04.531.621.827] +subset: pheno_slim +subset: uberon_slim +synonym: "sinus sphenoidalis" RELATED LATIN [http://en.wikipedia.org/wiki/Sphenoidal_sinus] +synonym: "sphenoid sinus" EXACT [] +xref: FMA:54683 +xref: GAID:359 +xref: http://linkedlifedata.com/resource/umls/id/C0037885 +xref: http://www.snomedbrowser.com/Codes/Details/181207000 +xref: MA:0001795 +xref: MESH:D013101 +xref: NCIT:C12278 +xref: OpenCyc:Mx4rwEIoz5wpEbGdrcN5Y29ycA +xref: Sphenoidal:sinus +xref: UMLS:C0037885 {source="ncithesaurus:Sphenoid_Sinus"} +is_a: UBERON:0001825 ! paranasal sinus +intersection_of: UBERON:0001825 ! paranasal sinus +intersection_of: part_of UBERON:0009639 ! body of sphenoid +relationship: in_lateral_side_of UBERON:0003129 ! skull +relationship: in_lateral_side_of UBERON:0009639 {source="FMA-abduced-lr"} ! body of sphenoid +relationship: part_of UBERON:0009639 ! body of sphenoid + +[Term] +id: UBERON:0001725 +name: cranial synchondrosis +def: "The cartilaginous joints of the skull; these include sphenoethmoidal synchondrosis, sphenooccipital synchondrosis, sphenopetrosal synchondrosis, petrooccipital synchondrosis, anterior intraoccipital synchondrosis and posterior intraoccipital synchondrosis." [http://www.medilexicon.com/medicaldictionary.php?t=87514] +xref: EMAPA:35264 +xref: FMA:54816 +xref: http://www.snomedbrowser.com/Codes/Details/314228003 +xref: MA:0001502 +is_a: UBERON:0002215 {source="FMA"} ! synchondrosis +intersection_of: UBERON:0002215 ! synchondrosis +intersection_of: part_of UBERON:0003129 ! skull +relationship: part_of UBERON:0003129 ! skull + +[Term] +id: UBERON:0001726 +name: papilla of tongue +subset: pheno_slim +synonym: "lingual papilla" EXACT [] +synonym: "tongue papilla" EXACT [] +xref: BIRNLEX:4102 +xref: EMAPA:32777 +xref: FMA:54819 +xref: http://linkedlifedata.com/resource/umls/id/C0226964 +xref: http://linkedlifedata.com/resource/umls/id/C1289183 +xref: http://www.snomedbrowser.com/Codes/Details/368728006 +xref: MA:0001593 +xref: NCIT:C33258 +xref: UMLS:C0226964 {source="ncithesaurus:Papilla_of_the_Tongue"} +xref: UMLS:C0226964 {source="BIRNLEX:4102"} +xref: UMLS:C1289183 {source="BIRNLEX:4102"} +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0005020 ! mucosa of tongue +relationship: part_of UBERON:0009471 {source="FMA-modified"} ! dorsum of tongue + +[Term] +id: UBERON:0001727 +name: taste bud +def: "A specialized receptor organ that is a collection of cells spanning the gustatory epithelium." [http://periowiki.wikispot.org/Taste_bud_histology] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "caliculus gustatorius" RELATED LATIN [http://en.wikipedia.org/wiki/Taste_bud] +synonym: "caliculus gustatorius" RELATED PLURAL [http://en.wikipedia.org/wiki/Taste_bud] +synonym: "taste buds" RELATED PLURAL [http://en.wikipedia.org/wiki/Taste_bud] +synonym: "taste-bud" RELATED [http://en.wikipedia.org/wiki/Taste_bud] +synonym: "tastebud" EXACT [http://en.wikipedia.org/wiki/Taste_bud] +synonym: "tastebuds" RELATED PLURAL [http://en.wikipedia.org/wiki/Taste_bud] +xref: AAO:0010573 +xref: BIRNLEX:4101 +xref: BTO:0000989 +xref: CALOHA:TS-1015 +xref: EMAPA:35850 +xref: FMA:54825 +xref: GAID:815 +xref: http://linkedlifedata.com/resource/umls/id/C0039337 +xref: http://www.snomedbrowser.com/Codes/Details/362099006 +xref: MA:0001591 +xref: MESH:A08.800.550.700.120.800 +xref: NCIT:C96518 +xref: nifext:14 +xref: OpenCyc:Mx4rvVjan5wpEbGdrcN5Y29ycA +xref: TAO:0001074 +xref: Taste:bud +xref: UMLS:C0039337 {source="ncithesaurus:Taste_Bud"} +xref: UMLS:C0039337 {source="BIRNLEX:4101"} +xref: VHOG:0000130 +xref: XAO:0000445 +xref: ZFA:0001074 +is_a: UBERON:0003212 ! gustatory organ +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: contributes_to_morphology_of UBERON:0001033 ! gustatory system +relationship: develops_from UBERON:0007690 {source="http://dev.biologists.org/content/128/22/4573.full"} ! early pharyngeal endoderm +relationship: part_of UBERON:0002926 {source="NIF"} ! gustatory epithelium + +[Term] +id: UBERON:0001728 +name: nasopharynx +def: "the section of the pharynx that lies above the soft palate" [MGI:cwg, MP:0002251] +subset: pheno_slim +subset: uberon_slim +synonym: "epipharynx" RELATED [http://en.wikipedia.org/wiki/Pharynx] +synonym: "nasal part of pharynx" EXACT [] +synonym: "Nasenrachenraum" RELATED [BTO:0000662] +synonym: "pars nasalis pharyngis" RELATED LATIN [http://en.wikipedia.org/wiki/Nasopharynx] +synonym: "rhinopharynx" EXACT [] +xref: BTO:0000662 +xref: CALOHA:TS-0663 +xref: EHDAA2:0001239 +xref: EHDAA:7086 +xref: EMAPA:17670 +xref: EV:0100066 +xref: FMA:54878 +xref: GAID:339 +xref: http://en.wikipedia.org/wiki/Nasopharynx +xref: http://linkedlifedata.com/resource/umls/id/C0027442 +xref: http://www.snomedbrowser.com/Codes/Details/181200003 +xref: MA:0000443 +xref: MAT:0000447 +xref: MESH:A03.867.557 +xref: NCIT:C12423 +xref: OpenCyc:Mx4rwUPoDJwpEbGdrcN5Y29ycA +xref: UMLS:C0027442 {source="ncithesaurus:Nasopharynx"} +xref: VHOG:0000375 +is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract +relationship: contributes_to_morphology_of UBERON:0001042 ! chordate pharynx +relationship: part_of UBERON:0001042 ! chordate pharynx +relationship: part_of UBERON:0001557 ! upper respiratory tract + +[Term] +id: UBERON:0001729 +name: oropharynx +def: "the portion of the pharynx that lies between the soft palate and the upper edge of the epiglottis" [MGI:cwg, MP:0002252] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "mesopharynx" RELATED [http://en.wikipedia.org/wiki/Pharynx] +synonym: "oral part of pharynx" EXACT [] +synonym: "pars oralis pharyngis" RELATED LATIN [http://en.wikipedia.org/wiki/Oropharynx] +xref: BTO:0005257 +xref: CALOHA:TS-0718 +xref: EFO:0001976 +xref: EHDAA2:0004082 +xref: EMAPA:25094 +xref: EV:0100067 +xref: FMA:54879 +xref: GAID:340 +xref: http://en.wikipedia.org/wiki/Oropharynx +xref: http://linkedlifedata.com/resource/umls/id/C0521367 +xref: http://www.snomedbrowser.com/Codes/Details/263376008 +xref: MA:0000351 +xref: MAT:0000446 +xref: MESH:A03.867.603 +xref: NCIT:C12762 +xref: OpenCyc:Mx4rwACoxpwpEbGdrcN5Y29ycA +xref: UMLS:C0521367 {source="ncithesaurus:Oropharynx"} +xref: VHOG:0000457 +xref: VSAO:0000034 +xref: XAO:0004048 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0013522 ! subdivision of tube +relationship: contributes_to_morphology_of UBERON:0001042 ! chordate pharynx +relationship: develops_from UBERON:0010023 {source="ISBN:0073040584-table13.1"} ! dorsal part of pharyngeal pouch 2 +relationship: part_of UBERON:0001042 ! chordate pharynx +relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system + +[Term] +id: UBERON:0001730 +name: extrinsic ligament of larynx +synonym: "laryngeal extrinsic ligament" EXACT [] +xref: EMAPA:37627 {source="MA:th"} +xref: FMA:54921 +xref: http://www.snomedbrowser.com/Codes/Details/279550004 +xref: MA:0001756 +is_a: UBERON:0001743 ! ligament of larynx + +[Term] +id: UBERON:0001731 +name: cavity of pharynx +def: "A anatomical space that is enclosed by a pharynx." [OBOL:automatic] +synonym: "cavitas pharyngealis" RELATED LATIN [] +synonym: "cavitas pharyngis" RELATED [BTO:0002097] +synonym: "lumen of pharynx" EXACT [] +synonym: "pharyngeal cavity" EXACT [] +xref: AAO:0010435 +xref: BSA:0000113 +xref: BTO:0002097 +xref: EMAPA:18381 +xref: FMA:54935 +xref: http://www.snomedbrowser.com/Codes/Details/180543003 +xref: XAO:0000105 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0006562 ! pharynx +relationship: develops_from UBERON:0001041 {source="XAO"} ! foregut +relationship: luminal_space_of UBERON:0006562 ! pharynx +relationship: part_of UBERON:0006562 ! pharynx + +[Term] +id: UBERON:0001732 +name: pharyngeal tonsil +def: "the lymph tissue in the roof and posterior wall of the nasopharynx" [MGI:cwg, MP:0002384] +subset: pheno_slim +subset: uberon_slim +synonym: "adenoid" EXACT [] +synonym: "nasopharyngeal tonsil" EXACT [] +synonym: "Rachenmandel" RELATED [BTO:0000777] +synonym: "tonsil of Luschka" EXACT [] +synonym: "tonsilla pharyngea" RELATED LATIN [http://en.wikipedia.org/wiki/Pharyngeal_tonsil] +synonym: "tonsilla pharyngealis" EXACT LATIN [FMA:54970, FMA:TA] +xref: BTO:0000777 +xref: EV:0100054 +xref: FMA:54970 +xref: GAID:1288 +xref: http://linkedlifedata.com/resource/umls/id/C0001428 +xref: http://www.snomedbrowser.com/Codes/Details/181199001 +xref: MA:0000774 +xref: MESH:A15.382.520.604.084 +xref: NCIT:C33318 +xref: Pharyngeal:tonsil +xref: UMLS:C0001428 {source="ncithesaurus:Pharyngeal_Tonsil"} +is_a: UBERON:0002372 ! tonsil +is_a: UBERON:0012330 {source="cjm"} ! nasal-associated lymphoid tissue + +[Term] +id: UBERON:0001733 +name: soft palate +def: "The muscular, non-bony arch-shaped posterior portion of the palate extending from the posterior edge of the hard palate." [GO:0060023, http://en.wikipedia.org/wiki/Soft_palate, http://www.feedexp.org, UBERON:cjm] +subset: pheno_slim +subset: uberon_slim +synonym: "muscular palate" RELATED [http://en.wikipedia.org/wiki/Soft_palate] +synonym: "palatum molle" RELATED LATIN [http://en.wikipedia.org/wiki/Soft_palate] +synonym: "velum" RELATED [http://en.wikipedia.org/wiki/Soft_palate] +synonym: "velum palatinum" RELATED LATIN [http://en.wikipedia.org/wiki/Soft_palate] +xref: BTO:0005405 +xref: EMAPA:18949 +xref: FMA:55021 +xref: GAID:1284 +xref: http://linkedlifedata.com/resource/umls/id/C0030219 +xref: http://www.snomedbrowser.com/Codes/Details/245784004 +xref: MA:0002412 +xref: MAT:0000039 +xref: MESH:D010160 +xref: MIAA:0000039 +xref: NCIT:C12231 +xref: Soft:palate +xref: UMLS:C0030219 {source="ncithesaurus:Soft_Palate"} +is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster +relationship: part_of UBERON:0001716 {source="MA"} ! secondary palate + +[Term] +id: UBERON:0001734 +name: palatine uvula +def: "Conic projection from the posterior edge of the middle of the soft palate, composed of connective tissue containing a number of racemose glands, and some muscular fibers." [http://en.wikipedia.org/wiki/Palatine_uvula] +comment: seeAlso - bifid uvula and cleft palate +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "palatine uvula" EXACT [] +synonym: "uvula" EXACT [FMA:55022] +synonym: "uvula of palate" EXACT [] +synonym: "uvula palatina" EXACT LATIN [FMA:55022, FMA:TA] +synonym: "uvula palatina" RELATED LATIN [http://en.wikipedia.org/wiki/Palatine_uvula] +xref: BTO:0002204 +xref: EFO:0001386 +xref: FMA:55022 +xref: GAID:1285 +xref: http://linkedlifedata.com/resource/umls/id/C0042173 +xref: http://www.snomedbrowser.com/Codes/Details/362082005 +xref: MESH:D014609 +xref: NCIT:C12232 +xref: Palatine:uvula +xref: UMLS:C0042173 {source="ncithesaurus:Uvula"} +is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure +disjoint_from: UBERON:0004078 ! cerebellum vermis lobule IX +relationship: part_of UBERON:0001733 ! soft palate + +[Term] +id: UBERON:0001735 +name: tonsillar ring +def: "the circular lymphoid tissue formed by the lingual, pharyngeal, and facial tonsils" [MGI:cwg, MP:0002379] +subset: pheno_slim +subset: uberon_slim +synonym: "anulus lymphoideus pharyngis" EXACT LATIN [FMA:55070, FMA:TA] +synonym: "oropharyngeal lymphoid tissue" EXACT [] +synonym: "pharyngeal lymphatic ring" EXACT [] +synonym: "pharyngeal lymphoid ring" EXACT [] +synonym: "Waldeyer's ring" EXACT [] +synonym: "Waldeyer's tonsillar ring" EXACT [] +xref: FMA:55070 +xref: http://linkedlifedata.com/resource/umls/id/C0459892 +xref: http://www.snomedbrowser.com/Codes/Details/56411004 +xref: MA:0000752 +xref: NCIT:C73468 +xref: UMLS:C0459892 {source="ncithesaurus:Waldeyers_Tonsillar_Ring"} +xref: Waldeyer's:ring +is_a: UBERON:0001962 ! gut-associated lymphoid tissue +relationship: part_of UBERON:0001042 ! chordate pharynx +relationship: seeAlso FMA:79771 + +[Term] +id: UBERON:0001736 +name: submandibular gland +def: "Either of the paired compound tubuloalveolar (aka tubuloacinar) major salivary glands composed of both serous and mucous secretory cells and situated beneath the mandible." [https://doi.org/10.1111/j.1432-0436.2006.00088.x, MGI:anna] +comment: lobular, sexually dimorphic in mouse +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "glandula submandibularis" RELATED LATIN [http://en.wikipedia.org/wiki/Submandibular_gland] +synonym: "mandibular gland" EXACT SENSU [http://www.avdc.org/Nomenclature.pdf] +synonym: "mandibular salivary gland" EXACT SENSU [http://www.avdc.org/Nomenclature.pdf] +synonym: "maxillary gland" RELATED [] +synonym: "submandibular salivary gland" EXACT [] +synonym: "submaxillary gland" RELATED [] +xref: BTO:0001316 +xref: CALOHA:TS-0988 +xref: EFO:0001387 +xref: EMAPA:18812 +xref: EV:0100061 +xref: FMA:55093 +xref: GAID:942 +xref: http://linkedlifedata.com/resource/umls/id/C0038556 +xref: http://www.snomedbrowser.com/Codes/Details/181235001 +xref: MA:0001589 +xref: MESH:D013363 +xref: NCIT:C12233 +xref: Submandibular:gland +xref: UMLS:C0038556 {source="ncithesaurus:Submandibular_Gland"} +xref: VHOG:0000364 +is_a: UBERON:0001829 ! major salivary gland +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0006298 ! submandibular gland primordium +relationship: in_lateral_side_of UBERON:0001710 {source="FMA-abduced-lr"} ! lower jaw region +relationship: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0001737 +name: larynx +def: "A continuation of the pharynx that is involved in breathing, sound production, and protecting the trachea against food aspiration." [http://en.wikipedia.org/wiki/Larynx, http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "Kehlkopf@de" RELATED [BTO:0001208] +xref: AAO:0000268 +xref: BTO:0001208 +xref: CALOHA:TS-0532 +xref: EFO:0000838 +xref: EHDAA2:0004063 +xref: EMAPA:18333 +xref: EV:0100039 +xref: FMA:55097 +xref: GAID:108 +xref: galen:Larynx +xref: http://en.wikipedia.org/wiki/Larynx +xref: http://linkedlifedata.com/resource/umls/id/C0023078 +xref: http://www.snomedbrowser.com/Codes/Details/181212004 +xref: MA:0000414 +xref: MAT:0000187 +xref: MESH:D007830 +xref: MIAA:0000187 +xref: NCIT:C12420 +xref: OpenCyc:Mx4rvViOnZwpEbGdrcN5Y29ycA +xref: UMLS:C0023078 {source="ncithesaurus:Larynx"} +xref: VHOG:0001279 +xref: XAO:0003081 +is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract +relationship: contributes_to_morphology_of UBERON:0001004 ! respiratory system +relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primordium +relationship: innervated_by UBERON:0003716 ! recurrent laryngeal nerve + +[Term] +id: UBERON:0001738 +name: thyroid cartilage +def: "the largest of the laryngeal cartilages" [ISBN:0-397-51047-0, MGI:cwg, MP:0002260] +subset: pheno_slim +subset: uberon_slim +synonym: "cartilago thyroidea" RELATED LATIN [http://en.wikipedia.org/wiki/Thyroid_cartilage] +synonym: "cartilago thyroidea" RELATED [http://en.wikipedia.org/wiki/Thyroid_cartilage] +synonym: "laryngeal prominence" RELATED [http://en.wikipedia.org/wiki/Thyroid_cartilage] +synonym: "pomus" RELATED [http://en.wikipedia.org/wiki/Thyroid_cartilage] +synonym: "pomus adamus" RELATED [http://en.wikipedia.org/wiki/Thyroid_cartilage] +xref: BTO:0003655 +xref: EHDAA2:0002030 +xref: EHDAA:9395 +xref: EMAPA:18698 +xref: FMA:55099 +xref: GAID:112 +xref: http://linkedlifedata.com/resource/umls/id/C0040126 +xref: http://www.snomedbrowser.com/Codes/Details/263483000 +xref: MA:0001764 +xref: MESH:A02.165.507.870 +xref: NCIT:C33780 +xref: Thyroid:cartilage +xref: UMLS:C0040126 {source="ncithesaurus:Thyroid_Cartilage"} +xref: VHOG:0001365 +is_a: UBERON:0001739 ! laryngeal cartilage +relationship: develops_from UBERON:0010219 {source="EHDAA2"} ! thyroid pre-cartilage condensation + +[Term] +id: UBERON:0001739 +name: laryngeal cartilage +def: "The cartilaginous structures that support the larynx." [MP:0002256] +subset: pheno_slim +synonym: "cartilage of larynx" EXACT [FMA:55108] +synonym: "cartilagines laryngeales" EXACT PLURAL [] +synonym: "larynx cartilage" EXACT [VHOG:0001550] +xref: BTO:0003660 +xref: EHDAA:8157 +xref: EMAPA:18697 +xref: FMA:55108 +xref: GAID:107 +xref: http://linkedlifedata.com/resource/umls/id/C0023050 +xref: http://www.snomedbrowser.com/Codes/Details/263482005 +xref: MA:0001758 +xref: MESH:A02.165.507 +xref: NCIT:C12281 +xref: UMLS:C0023050 {source="ncithesaurus:Laryngeal_Cartilage"} +xref: VHOG:0001550 +is_a: UBERON:0003406 ! cartilage of respiratory system +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0011004 ! pharyngeal arch cartilage +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0001737 ! larynx +relationship: develops_from UBERON:0010213 ! laryngeal pre-cartilage condensation +relationship: fma_set_term FMA:64159 +relationship: part_of UBERON:0010212 ! laryngeal apparatus + +[Term] +id: UBERON:0001740 +name: arytenoid cartilage +def: "the paired triangular laryngeal cartilages located postlaterally at the level of the thyroid cartilage" [ISBN:0-397-51047-0, MGI:cwg, MP:0002257] +subset: pheno_slim +subset: uberon_slim +synonym: "arytenoid" EXACT [EMAPA:18695] +synonym: "arytenoids" RELATED [http://en.wikipedia.org/wiki/Arytenoid_cartilage] +synonym: "cartilagines arytenoidea" RELATED LATIN [http://en.wikipedia.org/wiki/Arytenoid_cartilage] +synonym: "cartilago arytaenoidea" RELATED [AAO:0000674] +synonym: "cartilago arytenoidea" RELATED [] +xref: AAO:0000674 +xref: Arytenoid:cartilage +xref: EMAPA:17977 +xref: EMAPA:18695 +xref: FMA:55109 +xref: GAID:109 +xref: http://linkedlifedata.com/resource/umls/id/C0003943 +xref: http://www.snomedbrowser.com/Codes/Details/264446005 +xref: MA:0001759 +xref: MESH:A02.165.507.083 +xref: NCIT:C32148 +xref: UMLS:C0003943 {source="ncithesaurus:Arytenoid_Cartilage"} +is_a: UBERON:0001739 ! laryngeal cartilage +is_a: UBERON:0015212 ! lateral structure +relationship: develops_from UBERON:0010220 {source="cjm"} ! arytenoid pre-cartilage condensation +relationship: in_lateral_side_of UBERON:0001737 ! larynx + +[Term] +id: UBERON:0001741 +name: corniculate cartilage +def: "The corniculate cartilages (cartilages of Santorini) are two small conical nodules consisting of yellow elastic cartilage, which articulate with the summits of the arytenoid cartilages and serve to prolong them posteriorly and medially. They are situated in the posterior parts of the aryepiglottic folds of mucous membrane, and are sometimes fused with the arytenoid cartilages. [WP,unvetted]." [http://en.wikipedia.org/wiki/Corniculate_cartilages] +subset: uberon_slim +synonym: "cartilage of Santorini" EXACT [] +synonym: "cartilagines corniculata" EXACT LATIN [http://en.wikipedia.org/wiki/Corniculate_cartilage] +synonym: "Santorini's cartilage" EXACT [] +xref: Corniculate:cartilages +xref: EMAPA:37484 {source="MA:th"} +xref: FMA:55110 +xref: http://linkedlifedata.com/resource/umls/id/C0225556 +xref: http://www.snomedbrowser.com/Codes/Details/278989005 +xref: MA:0001885 +xref: NCIT:C32373 +xref: UMLS:C0225556 {source="ncithesaurus:Corniculate_Cartilage"} +is_a: UBERON:0001996 {source="MA"} ! elastic cartilage tissue +is_a: UBERON:0003583 ! larynx connective tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: has_developmental_contribution_from UBERON:0003117 ! pharyngeal arch 6 +relationship: part_of UBERON:0008895 ! splanchnocranium + +[Term] +id: UBERON:0001742 +name: epiglottic cartilage +def: "The most superior of the laryngeal cartilages, which is found at the root of the tongue and folds back over the entrance to the larynx during swallowing." [MP:0002259] +subset: uberon_slim +xref: EMAPA:37522 {source="MA:th"} +xref: FMA:55112 +xref: http://linkedlifedata.com/resource/umls/id/C0458526 +xref: http://www.snomedbrowser.com/Codes/Details/278990001 +xref: MA:0001763 +xref: NCIT:C32526 +xref: UMLS:C0458526 {source="ncithesaurus:Epiglottic_Cartilage"} +is_a: UBERON:0001739 ! laryngeal cartilage +is_a: UBERON:0013765 ! digestive system element +intersection_of: UBERON:0001739 ! laryngeal cartilage +intersection_of: part_of UBERON:0000388 ! epiglottis +relationship: composed_primarily_of UBERON:0001996 ! elastic cartilage tissue +relationship: part_of UBERON:0000388 ! epiglottis + +[Term] +id: UBERON:0001743 +name: ligament of larynx +def: "A ligament that is part of a larynx and connexts the cartilages of the larynx" [http://education.yahoo.com/reference/gray/subjects/subject/236] +synonym: "laryngeal ligament" EXACT [] +synonym: "larynx ligament" EXACT [MA:0001755] +xref: EMAPA:37626 {source="MA:th"} +xref: FMA:55131 +xref: http://linkedlifedata.com/resource/umls/id/C0458519 +xref: http://www.snomedbrowser.com/Codes/Details/279508004 +xref: MA:0001755 +xref: NCIT:C32933 +xref: UMLS:C0458519 {source="ncithesaurus:Laryngeal_Ligament"} +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0008845 {source="FMA"} ! nonskeletal ligament +intersection_of: UBERON:0000211 ! ligament +intersection_of: part_of UBERON:0001737 ! larynx +relationship: part_of UBERON:0001737 ! larynx + +[Term] +id: UBERON:0001744 +name: lymphoid tissue +def: "Portion of connective tissue with various types of white blood cells enmeshed in it, most numerous being the lymphocytes[WP]." [http://en.wikipedia.org/wiki/Lymphoid_tissue] +subset: pheno_slim +subset: uberon_slim +synonym: "lymphatic tissue" EXACT [] +synonym: "lymphocytic tissue" EXACT [] +xref: BTO:0000753 +xref: CALOHA:TS-0584 +xref: FMA:55220 +xref: GAID:342 +xref: galen:LymphoidTissue +xref: http://linkedlifedata.com/resource/umls/id/C0024296 +xref: http://www.snomedbrowser.com/Codes/Details/181768009 +xref: Lymphoid:tissue +xref: MA:0002436 +xref: MESH:D008221 +xref: NCIT:C13049 +xref: UMLS:C0024296 {source="ncithesaurus:Lymphoid_Tissue"} +is_a: UBERON:0034769 {source="FMA"} ! lymphomyeloid tissue +relationship: dubious_for_taxon NCBITaxon:7776 {notes="lampreys lack organized lymphoid tissue", source="NCBIBook:NBK27108"} +relationship: part_of UBERON:0002465 ! lymphoid system + +[Term] +id: UBERON:0001745 +name: secondary nodular lymphoid tissue +def: "A lymphoid follicle that contains a germinal center." [CL:tm] +subset: uberon_slim +synonym: "peripheral lymphoid tissue" EXACT [] +synonym: "secondary lymphoid nodule" EXACT [] +synonym: "secondary lymphoid tissue" EXACT [] +xref: FMA:55224 +xref: GAID:946 +is_a: UBERON:0000444 ! lymphoid follicle +intersection_of: UBERON:0000444 ! lymphoid follicle +intersection_of: has_part UBERON:0010754 ! germinal center +relationship: develops_from UBERON:0010422 ! primary nodular lymphoid tissue +relationship: has_part UBERON:0010754 ! germinal center + +[Term] +id: UBERON:0001746 +name: capsule of thyroid gland +synonym: "capsula fibrosa glandulae thyroideae" EXACT LATIN [FMA:55513, FMA:TA] +synonym: "fibrous capsule of thyroid gland" EXACT [FMA:55513] +synonym: "thyroid capsule" EXACT [] +synonym: "thyroid gland capsule" EXACT [MA:0002675] +xref: EMAPA:37767 {source="MA:th"} +xref: FMA:55513 +xref: http://linkedlifedata.com/resource/umls/id/C0229575 +xref: http://www.snomedbrowser.com/Codes/Details/176859009 +xref: MA:0002675 +xref: NCIT:C33781 +xref: UMLS:C0229575 {source="ncithesaurus:Thyroid_Gland_Capsule"} +is_a: UBERON:0003893 ! capsule +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0003893 ! capsule +intersection_of: part_of UBERON:0002046 ! thyroid gland +relationship: part_of UBERON:0002046 ! thyroid gland + +[Term] +id: UBERON:0001747 +name: parenchyma of thyroid gland +def: "A parenchyma that is part of a thyroid follicle [Automatically generated definition]." [OBOL:automatic] +synonym: "parenchyma glandulae thyroideae" RELATED [BTO:0004579] +synonym: "parenchyma of thyroid" EXACT [OBOL:accepted] +synonym: "parenchyma of thyroid follicle" EXACT [OBOL:automatic] +synonym: "parenchyma of thyroid gland follicle" EXACT [OBOL:automatic] +synonym: "thyroid follicle parenchyma" EXACT [OBOL:automatic] +synonym: "thyroid gland follicle parenchyma" EXACT [OBOL:automatic] +synonym: "thyroid gland parenchyma" EXACT [] +synonym: "thyroid parenchyma" EXACT [OBOL:accepted] +xref: BTO:0004579 +xref: EMAPA:37769 {source="MA:th"} +xref: FMA:55515 +xref: http://www.snomedbrowser.com/Codes/Details/371402001 +xref: MA:0000730 +is_a: UBERON:0000353 ! parenchyma +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000353 ! parenchyma +intersection_of: part_of UBERON:0002046 ! thyroid gland +relationship: part_of UBERON:0002046 ! thyroid gland + +[Term] +id: UBERON:0001748 +name: capsule of parathyroid gland +def: "The dense and irregular connective tissue capsule surrounding a parathyroid gland." [MGI:anna] +subset: pheno_slim +synonym: "parathyroid gland capsule" EXACT [] +xref: EMAPA:35663 +xref: FMA:55566 +xref: http://linkedlifedata.com/resource/umls/id/C0927176 +xref: MA:0002676 +xref: NCIT:C33265 +xref: UMLS:C0927176 {source="ncithesaurus:Parathyroid_Gland_Capsule"} +is_a: UBERON:0003893 ! capsule +intersection_of: UBERON:0003893 ! capsule +intersection_of: bounding_layer_of UBERON:0001132 ! parathyroid gland +relationship: bounding_layer_of UBERON:0001132 ! parathyroid gland +relationship: composed_primarily_of UBERON:0011822 ! dense irregular connective tissue +relationship: part_of UBERON:0001132 {source="MA"} ! parathyroid gland + +[Term] +id: UBERON:0001749 +name: parenchyma of parathyroid gland +def: "A parenchyma that is part of a parathyroid gland [Automatically generated definition]." [OBOL:automatic] +synonym: "parathyroid gland parenchyma" EXACT [] +synonym: "parathyroid parenchyma" EXACT [OBOL:automatic] +synonym: "parenchyma of parathyroid" EXACT [OBOL:automatic] +xref: EMAPA:35664 +xref: FMA:55569 +xref: MA:0002677 +is_a: UBERON:0000353 ! parenchyma +intersection_of: UBERON:0000353 ! parenchyma +intersection_of: part_of UBERON:0001132 ! parathyroid gland +relationship: part_of UBERON:0001132 ! parathyroid gland + +[Term] +id: UBERON:0001750 +name: lacrimal apparatus +def: "A network of orbital structures of the eye that secrete and drain tears from the surface of the eyeball into the nasal cavity; these parts include the lacrimal glands, lacrimal lake, lacrimal ducts, lacrimal canals, lacrimal sacs, nasolacrimal ducts, and lacrimal puncta." [MGI:anna] +subset: pheno_slim +subset: uberon_slim +synonym: "apparatus lacrimalis" EXACT LATIN [http://en.wikipedia.org/wiki/Lacrimal_apparatus] +synonym: "lacrimal drainage system" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "lacrymal system" EXACT [MGI:anna] +synonym: "nasolacrimal drainage system" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "nasolacrimal system" RELATED [HPO:pr] +xref: EMAPA:35462 +xref: FMA:55605 +xref: GAID:901 +xref: http://linkedlifedata.com/resource/umls/id/C0022903 +xref: Lacrimal:apparatus +xref: MA:0000274 +xref: MESH:D007765 +xref: NCIT:C32905 +xref: UMLS:C0022903 {source="ncithesaurus:Lacrimal_Apparatus"} +is_a: UBERON:0000467 ! anatomical system +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: contributes_to_morphology_of UBERON:0000019 ! camera-type eye +relationship: develops_from UBERON:0000076 {source="ISBN:0781772214"} ! external ectoderm +relationship: part_of UBERON:0010409 {source="MA"} ! ocular surface region +relationship: part_of UBERON:0035639 {source="HPO:pr"} ! ocular adnexa + +[Term] +id: UBERON:0001751 +name: dentine +def: "Collagen-rich odontogenic tissue characteristic of teeth and tooth-like skeletal elements (e.g., odontodes); mature dentine is mineralized and develops from predentine tissue; often (but not always) tubular and acellular." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000069] +comment: . +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "dentin" EXACT [ZFA:0005143] +synonym: "dentin" EXACT [MA:0002542] +synonym: "dentine of tooth" EXACT [] +synonym: "predentin" NARROW [GO:0070468] +xref: BTO:0003453 +xref: EMAPA:35281 +xref: FMA:55628 +xref: GAID:1272 +xref: http://en.wikipedia.org/wiki/Dentin +xref: http://linkedlifedata.com/resource/umls/id/C0011429 +xref: http://www.snomedbrowser.com/Codes/Details/362112004 +xref: MA:0002542 +xref: MESH:A14.254.900.280 +xref: NCIT:C32453 +xref: TAO:0005143 +xref: UMLS:C0011429 {source="ncithesaurus:Dentin"} +xref: VHOG:0001589 +xref: VSAO:0000069 +xref: XAO:0004051 +xref: ZFA:0005143 +is_a: UBERON:0010365 {source="VSAO"} ! odontoid tissue +is_a: UBERON:4000013 ! mineralized skeletal tissue +relationship: develops_from UBERON:0011587 ! pre-dentine +relationship: transformation_of UBERON:0011587 {source="VSAO"} ! pre-dentine + +[Term] +id: UBERON:0001752 +name: enamel +def: "A dentine-like hypermineralized substance that covers the tooth tip. Enamel's primary mineral is hydroxylapatite, which is a crystalline calcium phosphate. Unlike dentin and bone, enamel does not contain collagen. Instead, it has two unique classes of proteins called amelogenins and enamelins[WP]." [http://en.wikipedia.org/wiki/Enamel_organ, ZFIN:curator] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "enamel of tooth" EXACT [] +synonym: "enamel tissue" EXACT [VSAO:curator] +synonym: "enameloid" RELATED [] +synonym: "tooth enamel" EXACT [] +xref: BTO:0001844 +xref: CALOHA:TS-1057 +xref: EMAPA:35303 +xref: Enamel:organ +xref: FMA:55629 +xref: http://linkedlifedata.com/resource/umls/id/C0011350 +xref: http://www.snomedbrowser.com/Codes/Details/362113009 +xref: MA:0002543 +xref: MESH:A14.254.900.255 +xref: NCIT:C32505 +xref: UMLS:C0011350 {source="ncithesaurus:Enamel"} +xref: VSAO:0000065 +xref: XAO:0004198 +is_a: UBERON:0010365 {source="VSAO"} ! odontoid tissue +is_a: UBERON:4000013 ! mineralized skeletal tissue +relationship: develops_from UBERON:0011588 {source="VSAO"} ! pre-enamel + +[Term] +id: UBERON:0001753 +name: cementum +def: "Odontoid tissue that is deposited by cementoblasts onto dentine tissue and functions to attach teeth, odontodes and other odontogenic derivatives to bone tissue and the integument." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000062] +subset: pheno_slim +synonym: "bone of attachment" RELATED [VSAO:0000062] +synonym: "cement" EXACT [FMA:55630] +synonym: "cement of tooth" EXACT [] +synonym: "cementum" EXACT [] +synonym: "cementum of tooth" EXACT [] +xref: BTO:0002525 +xref: CALOHA:TS-2163 +xref: EMAPA:35203 +xref: FMA:55630 +xref: http://en.wikipedia.org/wiki/Cementum +xref: http://linkedlifedata.com/resource/umls/id/C0011343 +xref: http://www.snomedbrowser.com/Codes/Details/362114003 +xref: MA:0002541 +xref: MESH:A14.254.646.267 +xref: NCIT:C32276 +xref: UMLS:C0011343 {source="ncithesaurus:Cementum"} +xref: VSAO:0000062 +xref: XAO:0004196 +is_a: UBERON:0010365 {source="VSAO"} ! odontoid tissue +relationship: has_developmental_contribution_from UBERON:0008969 {source="http://www.ncbi.nlm.nih.gov/pubmed/19767574", source="Wikipedia"} ! dental follicle + +[Term] +id: UBERON:0001754 +name: dental pulp +def: "The part in the center of a tooth made up of living soft tissue and cells called odontoblasts[WP]." [http://en.wikipedia.org/wiki/Dental_pulp] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "dental pulp cell" RELATED [BTO:0000339] +synonym: "pulp of tooth" EXACT [] +synonym: "tooth pulp" EXACT [ZFA:0005141] +xref: BTO:0000339 +xref: CALOHA:TS-0195 +xref: Dental:pulp +xref: EMAPA:35274 +xref: FMA:55631 +xref: GAID:1270 +xref: http://linkedlifedata.com/resource/umls/id/C0011399 +xref: http://www.snomedbrowser.com/Codes/Details/362110007 +xref: MA:0001599 +xref: MESH:A14.254.900.260 +xref: NCIT:C32451 +xref: TAO:0005141 +xref: UMLS:C0011399 {source="ncithesaurus:Dental_Pulp"} +xref: VHOG:0001469 +xref: ZFA:0005141 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0011825 {source="FMA"} ! loose connective tissue +relationship: develops_from UBERON:0001763 {source="ZFA"} ! odontogenic papilla +relationship: part_of UBERON:0001091 ! calcareous tooth + +[Term] +id: UBERON:0001755 +name: distal part of styloid process of temporal bone +def: "A segment in the hyoidean arch between the epihyal and tympanohyal[biology-online]. The interhyal is a small rod-like element that connects the ventral and dorsal parts of the hyoid arch. It articulates laterally with the posterior end of the epihyal and medially at the cartilaginous junction between the hyomandibula and the symplectic. It remains cartilaginous in adult zebrafish and other cypriniforms[ZFA]." [http://www.biology-online.org/dictionary/Stylohyal] +subset: vertebrate_core +synonym: "distal part of styloid process" EXACT [FMA:56472] +synonym: "stylohyal" BROAD [FMA:56472] +synonym: "stylohyal bone" RELATED [MFMO:0000053] +xref: FMA:56472 +xref: MFMO:0000053 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0003960 ! styloid process of temporal bone + +[Term] +id: UBERON:0001756 +name: middle ear +def: "The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window)[GO]." [GO:0042474, http://en.wikipedia.org/wiki/Middle_ear] +subset: pheno_slim +subset: uberon_slim +synonym: "auris media" RELATED LATIN [http://en.wikipedia.org/wiki/Middle_ear] +synonym: "auris media" RELATED [BTO:0002099] +xref: AAO:0011065 +xref: BIRNLEX:1695 +xref: BTO:0002099 +xref: CALOHA:TS-2233 +xref: EHDAA2:0001181 +xref: EHDAA:5693 +xref: EMAPA:17000 +xref: EV:0100357 +xref: FMA:56513 +xref: GAID:165 +xref: http://linkedlifedata.com/resource/umls/id/C0013455 +xref: http://linkedlifedata.com/resource/umls/id/C1268972 +xref: http://www.snomedbrowser.com/Codes/Details/181185000 +xref: MA:0000253 +xref: MAT:0000146 +xref: MESH:D004432 +xref: MIAA:0000146 +xref: Middle:ear +xref: NCIT:C12274 +xref: OpenCyc:Mx4rvbw1j5wpEbGdrcN5Y29ycA +xref: UMLS:C0013455 {source="BIRNLEX:1695"} +xref: UMLS:C0013455 {source="ncithesaurus:Middle_Ear"} +xref: UMLS:C1268972 {source="BIRNLEX:1695"} +xref: VHOG:0000312 +xref: XAO:0000191 +is_a: UBERON:0034921 ! multi organ part structure +relationship: contributes_to_morphology_of UBERON:0001690 ! ear +relationship: part_of UBERON:0001690 ! ear + +[Term] +id: UBERON:0001757 +name: pinna +def: "The part of the ear that projects from the head, connecting to the external acoustic meatus." [http://en.wikipedia.org/wiki/Pinna_(anatomy), http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "auricle" EXACT [] +synonym: "auricle of ear" EXACT [] +synonym: "auricle of external ear" EXACT [] +synonym: "auricula" EXACT [http://en.wikipedia.org/wiki/Auricula] +synonym: "auricula (auris externa)" EXACT [] +synonym: "pinna of ear" EXACT [] +synonym: "pinnae" RELATED PLURAL [] +xref: EHDAA2:0001467 +xref: EMAPA:17589 +xref: EV:0100355 +xref: FMA:56580 +xref: galen:Auricle +xref: http://linkedlifedata.com/resource/umls/id/C0928075 +xref: http://www.snomedbrowser.com/Codes/Details/421159007 +xref: MA:0000259 +xref: NCIT:C32165 +xref: OpenCyc:Mx4rvs_VC5wpEbGdrcN5Y29ycA +xref: Pinna:(anatomy) +xref: UMLS:C0928075 {source="ncithesaurus:Auricle"} +xref: VHOG:0000460 +is_a: UBERON:0001444 ! subdivision of head +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: continuous_with UBERON:0001352 ! external acoustic meatus +relationship: develops_from UBERON:0006208 ! auditory hillocks +relationship: part_of UBERON:0001691 ! external ear + +[Term] +id: UBERON:0001758 +name: periodontium +def: "The tissues that invest or help to invest and support the teeth, including the periodontal ligament, gingivae, cementum, and alveolar and supporting bone[BTO]." [BTO:0001021, http://en.wikipedia.org/wiki/Periodontium] +subset: pheno_slim +synonym: "paradentium" RELATED [MESH:A14.254.646] +synonym: "periodontal ligament" RELATED INCONSISTENT [FMA:56665] +synonym: "periodontal membrane" RELATED [MA:0002467] +synonym: "tooth supporting structure" RELATED [MESH:A14.254.646] +xref: BTO:0001021 +xref: CALOHA:TS-2380 +xref: GAID:216 +xref: http://en.wikipedia.org/wiki/Periodontium +xref: http://linkedlifedata.com/resource/umls/id/C0031093 +xref: MESH:A14.254.646 +xref: NCIT:C33304 +xref: UMLS:C0031093 {source="ncithesaurus:Periodontium"} +is_a: UBERON:0000479 {source="cjm"} ! tissue +relationship: adjacent_to UBERON:0001091 ! calcareous tooth +relationship: part_of UBERON:0003672 {source="cjm"} ! dentition + +[Term] +id: UBERON:0001759 +name: vagus nerve +def: "Cranial nerve that branches into the lateral (to body sense organs) and the intestino-accessorial (to the skin, muscles of shoulder, hyoid, larynx, gut, lungs, and heart)." [http://en.wikipedia.org/wiki/Vagus_nerve, ISBN:0471209627] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "10n" BROAD ABBREVIATION [BIRNLEX:801, NIFSTD:NeuroNames_abbrevSource] +synonym: "CN-X" RELATED [] +synonym: "cranial nerve X" RELATED [] +synonym: "nerve X" RELATED [NeuroNames:702] +synonym: "nervus vagus" RELATED [BTO:0003472] +synonym: "nervus vagus" RELATED LATIN [http://en.wikipedia.org/wiki/Vagus_nerve] +synonym: "nervus vagus [x]" EXACT LATIN [FMA:5731, FMA:TA] +synonym: "pneuomgastric nerve" RELATED [BTO:0003472] +synonym: "tenth cranial nerve" EXACT [] +synonym: "vagal nerve" RELATED [] +synonym: "vagus" EXACT [] +synonym: "vagus nerve [X]" EXACT [] +synonym: "vagus nerve or its root" RELATED [BAMS:10n] +synonym: "vagus nerve tree" EXACT [] +synonym: "vagus X nerve" EXACT [MA:0001106] +xref: AAO:0010475 +xref: BAMS:10n +xref: BAMS:Xn +xref: BIRNLEX:801 +xref: BTO:0003472 +xref: EFO:0002549 +xref: EMAPA:37797 {source="MA:th"} +xref: FMA:5731 +xref: GAID:721 +xref: galen:VagusNerve +xref: HBA:9337 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=702 {source="BIRNLEX:801"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=702 +xref: http://linkedlifedata.com/resource/umls/id/C0042276 +xref: http://linkedlifedata.com/resource/umls/id/C1305910 +xref: http://www.snomedbrowser.com/Codes/Details/362466001 +xref: MA:0001106 +xref: MBA:917 +xref: MESH:D014630 +xref: NCIT:C12812 +xref: OpenCyc:Mx4rviHk2ZwpEbGdrcN5Y29ycA +xref: TAO:0000453 +xref: UMLS:C0042276 {source="ncithesaurus:Vagus_Nerve"} +xref: UMLS:C0042276 {source="BIRNLEX:801"} +xref: UMLS:C1305910 {source="BIRNLEX:801"} +xref: Vagus:nerve +xref: VHOG:0000737 +xref: XAO:0003097 +xref: ZFA:0000453 +is_a: UBERON:0001785 ! cranial nerve +intersection_of: UBERON:0001785 ! cranial nerve +intersection_of: extends_fibers_into UBERON:0011775 ! vagus nerve nucleus +relationship: extends_fibers_into UBERON:0002075 ! viscus +relationship: extends_fibers_into UBERON:0011775 ! vagus nerve nucleus +relationship: has_developmental_contribution_from UBERON:0005239 {notes="motor", source="Wikipedia"} ! basal plate metencephalon +relationship: part_of UBERON:0001033 ! gustatory system + +[Term] +id: UBERON:0001760 +name: frontal sinus +def: "The frontal sinus occupies the dorsal part of the skull medial to the orbit. It overlaps cranial and nasal cavities and is often referred to as the conchofrontal sinus. ." [http://en.wikipedia.org/wiki/Frontal_sinus, MURDOCH:753] +subset: pheno_slim +subset: uberon_slim +synonym: "cavity of frontal bone" EXACT [FMA:57417] +synonym: "sinus frontales" RELATED LATIN [http://en.wikipedia.org/wiki/Frontal_sinus] +xref: FMA:57417 +xref: Frontal:sinus +xref: GAID:357 +xref: http://linkedlifedata.com/resource/umls/id/C0016734 +xref: http://www.snomedbrowser.com/Codes/Details/181205008 +xref: MA:0001793 +xref: MESH:D005626 +xref: NCIT:C12277 +xref: OpenCyc:Mx4rvqMUR5wpEbGdrcN5Y29ycA +xref: UMLS:C0016734 {source="ncithesaurus:Frontal_Sinus"} +is_a: UBERON:0001825 {source="MA"} ! paranasal sinus + +[Term] +id: UBERON:0001761 +name: future foramen cecum +def: "A thickened and indented region in the midline in the floor of the rostral part of the pharyngeal region of the foregut, located between the second and third branchial arches that is the first indication of the thyroid primordium. [Kaufman_MH_and_Bard_JBL, The_anatomical_basis_of_mouse_development_(1999)_San_Diego:_Academic_Press, p.132]" [ISBN:0124020607, VHOG:0000826] +subset: uberon_slim +synonym: "foramen caecum" BROAD [MA:0000725] +synonym: "foramen cecum" BROAD [] +synonym: "future foramen caecum" BROAD [] +synonym: "future foramen cecum of tongue" BROAD [] +xref: EHDAA2:0000550 +xref: EHDAA:2150 +xref: EHDAA:2977 +xref: EMAPA:17069 +xref: VHOG:0000826 +is_a: UBERON:0016566 {source="EHDAA2"} ! pit +relationship: develops_from UBERON:0005665 {source="EHDAA2"} ! 3rd arch endoderm +relationship: part_of UBERON:0003091 ! thyroid primordium + +[Term] +id: UBERON:0001762 +name: turbinate bone +def: "the small curved bones that extends horizontally along the lateral wall of the nasal passage" [ISBN:0-683-40008-8, MP:0002244] +subset: pheno_slim +subset: uberon_slim +synonym: "concha" RELATED [EMAPA:25093] +synonym: "ossified nasal turbinal" EXACT [] +synonym: "ossified nasal turbinate" EXACT [] +synonym: "ossified turbinate" EXACT [] +synonym: "turbinal bone" EXACT [] +synonym: "turbinate bone" EXACT [EMAPA:25093] +xref: EHDAA2:0004101 +xref: EMAPA:25093 +xref: GAID:224 +xref: http://linkedlifedata.com/resource/umls/id/C1266928 +xref: http://www.snomedbrowser.com/Codes/Details/361931007 +xref: MA:0000286 +xref: MESH:D014420 +xref: Nasal:concha +xref: NCIT:C49594 +xref: OpenCyc:Mx4rv07bVJwpEbGdrcN5Y29ycA +xref: UMLS:C1266928 {source="ncithesaurus:Nasal_Turbinate"} +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:0035612 ! nasal turbinal +intersection_of: UBERON:0035612 ! nasal turbinal +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +disjoint_from: UBERON:0006203 ! conchal part of pinna +relationship: develops_from UBERON:0035007 ! nasal concha cartilage +relationship: transformation_of UBERON:0035007 ! nasal concha cartilage + +[Term] +id: UBERON:0001763 +name: odontogenic papilla +def: "A condensation of odontoblasts that forms the part of a tooth germ that gives rise to dentin and pulp in the mature tooth. It lies below a cellular aggregation known as the enamel organ." [http://en.wikipedia.org/wiki/Dental_papilla, ZFA:0005140] +subset: uberon_slim +subset: vertebrate_core +synonym: "dental papilla" RELATED [MA:0001598] +synonym: "dentinal papilla" RELATED [BTO:0001839] +synonym: "dermal papilla" RELATED INCONSISTENT [ISBN:0073040584] +synonym: "odontogenic condensation" EXACT [VSAO:0000025] +synonym: "papilla dentis" RELATED LATIN [http://en.wikipedia.org/wiki/Dental_papilla] +synonym: "pharyngeal tooth mesenchyme" NARROW SENSU [ZFA:0005140] +synonym: "tooth mesenchyme" RELATED [ZFA:0005140] +xref: BTO:0001839 +xref: Dental:papilla +xref: EMAPA:32892 +xref: FMA:57662 +xref: GAID:1277 +xref: MA:0001598 +xref: MESH:A14.254.900.720.250 +xref: TAO:0005140 +xref: VHOG:0001465 +xref: VSAO:0000025 +xref: XAO:0004045 +xref: ZFA:0005140 +is_a: UBERON:0005856 ! developing mesenchymal condensation +is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +relationship: develops_from UBERON:0003856 {source="ZFA"} ! uncondensed odontogenic mesenchyme +relationship: immediately_deep_to UBERON:0005176 ! tooth enamel organ +relationship: part_of UBERON:0008281 ! tooth bud + +[Term] +id: UBERON:0001764 +name: maxillary sinus +def: "One of the paired paranasal sinuses, located in the body of the maxilla, communicating with the middle meatus of the nasal cavity." [http://en.wikipedia.org/wiki/Maxillary_sinus, MESH:A04.531.621.578] +subset: pheno_slim +subset: uberon_slim +synonym: "antrum of Highmore" EXACT [] +synonym: "Highmore antrum" RELATED [MESH:A04.531.621.578] +synonym: "maxillary antrum" RELATED [MESH:A04.531.621.578] +synonym: "sinus maxilliaris" EXACT LATIN [http://en.wikipedia.org/wiki/Maxillary_sinus] +xref: CALOHA:TS-2231 +xref: FMA:57715 +xref: GAID:358 +xref: http://linkedlifedata.com/resource/umls/id/C0024957 +xref: http://www.snomedbrowser.com/Codes/Details/181204007 +xref: MA:0001794 +xref: Maxillary:sinus +xref: MESH:D008443 +xref: NCIT:C12275 +xref: OpenCyc:Mx4rvp2ZWJwpEbGdrcN5Y29ycA +xref: UMLS:C0024957 {source="ncithesaurus:Maxillary_Sinus"} +is_a: UBERON:0001825 ! paranasal sinus +relationship: in_lateral_side_of UBERON:0000033 ! head +relationship: part_of UBERON:0002397 ! maxilla + +[Term] +id: UBERON:0001765 +name: mammary duct +def: "Epithelial tube that transports milk[GO]." [GO:0060603, http://en.wikipedia.org/wiki/Lactiferous_duct] +comment: This structure regresses in most males +subset: pheno_slim +subset: uberon_slim +synonym: "ductus lactiferi" RELATED LATIN [http://en.wikipedia.org/wiki/Lactiferous_duct] +synonym: "ductus lactiferi" RELATED [BTO:0002845] +synonym: "galactophorous duct" RELATED [http://en.wikipedia.org/wiki/Lactiferous_duct] +synonym: "galactophorous tubule" RELATED [BTO:0002845] +synonym: "lactiferous duct" EXACT [FMA:58006] +synonym: "lactiferous gland duct" EXACT [OBOL:automatic] +synonym: "lactiferous tubule" RELATED [BTO:0002845] +synonym: "mammary gland duct" EXACT [MA:0000791] +synonym: "mammilary duct" RELATED [http://en.wikipedia.org/wiki/Lactiferous_duct] +xref: BTO:0002845 +xref: CALOHA:TS-2385 +xref: EMAPA:35538 +xref: FMA:58006 +xref: http://linkedlifedata.com/resource/umls/id/C0222613 +xref: http://www.snomedbrowser.com/Codes/Details/361719004 +xref: Lactiferous:duct +xref: MA:0000791 +xref: NCIT:C32910 +xref: UMLS:C0222613 {source="ncithesaurus:Lactiferous_Duct"} +is_a: UBERON:0000058 ! duct +is_a: UBERON:0003244 ! epithelium of mammary gland +is_a: UBERON:0003914 ! epithelial tube +intersection_of: UBERON:0000058 ! duct +intersection_of: part_of UBERON:0001911 ! mammary gland +relationship: channel_for UBERON:0001913 ! milk +relationship: channels_into UBERON:0002030 ! nipple + +[Term] +id: UBERON:0001766 +name: anterior chamber of eyeball +def: "the space in the eye, filled with aqueous humor, and bounded anteriorly by the cornea and a small portion of the sclera and posteriorly by a small portion of the ciliary body, the iris, and part of the crystalline lens" [MESH:A09.371.060.067, MP:0005205] +subset: pheno_slim +synonym: "anterior chamber" EXACT [HP:0000593, MP:0010709] +synonym: "anterior chamber of eye" EXACT [] +synonym: "camera anterior" EXACT [] +synonym: "camera anterior bulbi" RELATED [BTO:0002084] +synonym: "camera anterior bulbi oculi" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_chamber_of_eyeball] +synonym: "camera oculi anterior" RELATED [BTO:0002084] +synonym: "eye anterior chamber" EXACT [] +xref: BTO:0002084 +xref: EHDAA2:0000129 +xref: EHDAA:9033 +xref: EMAPA:18231 +xref: FMA:58078 +xref: GAID:889 +xref: http://en.wikipedia.org/wiki/Anterior_chamber_of_eyeball +xref: http://linkedlifedata.com/resource/umls/id/C0003151 +xref: http://www.snomedbrowser.com/Codes/Details/181160009 +xref: MA:0000262 +xref: MESH:D000867 +xref: NCIT:C12667 +xref: UMLS:C0003151 {source="ncithesaurus:Anterior_Chamber_of_the_Eye"} +xref: VHOG:0001431 +is_a: UBERON:0006311 {source="FMA"} ! chamber of eyeball +disjoint_from: UBERON:0001767 {source="lexical"} ! posterior chamber of eyeball +relationship: contributes_to_morphology_of UBERON:0001801 ! anterior segment of eyeball +relationship: part_of UBERON:0001801 ! anterior segment of eyeball + +[Term] +id: UBERON:0001767 +name: posterior chamber of eyeball +def: "the ring-like space, filled with aqueous humor, between the iris/pupil anteriorly and the lens and ciliary body posteriorly" [ISBN:0-683-40008-8, MP:0005299] +comment: The posterior chamber should not be confused with vitreous chamber. +subset: pheno_slim +synonym: "c. posterior bulbi" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_chamber_of_eyeball] +synonym: "camera oculi posterior" RELATED [BTO:0002086] +synonym: "camera posterior" EXACT [] +synonym: "camera posterior bulbi" RELATED [BTO:0002086] +synonym: "eye posterior chamber" EXACT [] +synonym: "posterior chamber of eye" EXACT [] +xref: BTO:0002086 +xref: FMA:58080 +xref: http://en.wikipedia.org/wiki/Posterior_chamber_of_eyeball +xref: http://linkedlifedata.com/resource/umls/id/C0229094 +xref: http://www.snomedbrowser.com/Codes/Details/362504004 +xref: MA:0002460 +xref: NCIT:C12900 +xref: OpenCyc:Mx4rvnYe8pwpEbGdrcN5Y29ycA +xref: UMLS:C0229094 {source="ncithesaurus:Posterior_Chamber_of_the_Eye"} +is_a: UBERON:0006311 ! chamber of eyeball +relationship: contributes_to_morphology_of UBERON:0001801 ! anterior segment of eyeball +relationship: part_of UBERON:0001801 ! anterior segment of eyeball + +[Term] +id: UBERON:0001768 +name: uvea +def: "the pigmented middle of the three concentric layers that make up an eye, consisting of the iris, ciliary body and choroid[WP,edited]." [http://en.wikipedia.org/wiki/Uvea, MP:0005197] +subset: pheno_slim +subset: uberon_slim +synonym: "pars iridica retinae" RELATED [http://en.wikipedia.org/wiki/Uvea] +synonym: "tunica vasculatis oculi" RELATED [http://en.wikipedia.org/wiki/Uvea] +synonym: "tunica vasculosa bulbi" RELATED LATIN [http://en.wikipedia.org/wiki/Uvea] +synonym: "tunica vasculosa of eyeball" EXACT [FMA:58103] +synonym: "uvea" EXACT [FMA:58103] +synonym: "uveal tract" EXACT [FMA:58103] +synonym: "vascular layer of eyeball" RELATED [FMA:58103] +xref: CALOHA:TS-2228 +xref: EMAPA:35901 +xref: FMA:58103 +xref: GAID:912 +xref: http://en.wikipedia.org/wiki/Uvea +xref: http://linkedlifedata.com/resource/umls/id/C0042160 +xref: http://www.snomedbrowser.com/Codes/Details/280648000 +xref: MA:0002480 +xref: MESH:D014602 +xref: NCIT:C12811 +xref: UMLS:C0042160 {source="ncithesaurus:Uvea"} +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004923 {source="FMA"} ! organ component layer +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0000019 ! camera-type eye +relationship: has_part UBERON:0001769 ! iris +relationship: has_part UBERON:0001775 ! ciliary body +relationship: has_part UBERON:0001776 ! optic choroid +relationship: part_of UBERON:0001801 ! anterior segment of eyeball +relationship: present_in_taxon NCBITaxon:7955 {source="https://doi.org/10.1177/0192623311409597"} + +[Term] +id: UBERON:0001769 +name: iris +def: "the adjustable membrane, composed of the stroma and pigmented epithelium, located just in front of the crystalline lens within the eye" [ISBN:0-683-40008-8, MP:0001322] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "anterior uvea" RELATED [] +synonym: "irides" RELATED PLURAL [] +synonym: "irises" RELATED PLURAL [VHOG:0000101] +xref: AAO:0010347 +xref: BTO:0000653 +xref: CALOHA:TS-0491 +xref: EFO:0004245 +xref: EMAPA:19154 +xref: EV:0100345 +xref: FMA:58235 +xref: GAID:917 +xref: http://linkedlifedata.com/resource/umls/id/C0022077 +xref: http://www.snomedbrowser.com/Codes/Details/181164000 +xref: Iris:(anatomy) +xref: MA:0000273 +xref: MESH:D007498 +xref: NCIT:C12737 +xref: OpenCyc:Mx4rvVjbppwpEbGdrcN5Y29ycA +xref: TAO:0001238 +xref: UMLS:C0022077 {source="ncithesaurus:Iris"} +xref: VHOG:0000101 +xref: XAO:0000185 +xref: ZFA:0001238 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: contributes_to_morphology_of UBERON:0011892 ! anterior uvea +relationship: develops_from UBERON:0004128 {source="XAO"} ! optic vesicle +relationship: part_of UBERON:0011892 ! anterior uvea + +[Term] +id: UBERON:0001770 +name: lacrimal canaliculus +def: "The part of the lacrimal duct that connects the lacrimal punctum to the lacrimal sac." [http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "canaliculus lacrimalis" RELATED LATIN [http://en.wikipedia.org/wiki/Lacrimal_canaliculi] +xref: EMAPA:37624 {source="MA:th"} +xref: FMA:58245 +xref: http://linkedlifedata.com/resource/umls/id/C0459631 +xref: http://www.snomedbrowser.com/Codes/Details/263348000 +xref: Lacrimal:canaliculi +xref: MA:0001294 +xref: NCIT:C32907 +xref: UMLS:C0459631 {source="ncithesaurus:Lacrimal_Canaliculus"} +is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: connects UBERON:0001351 ! lacrimal sac +relationship: connects UBERON:0010284 ! lacrimal punctum +relationship: part_of UBERON:0001850 {source="FMA"} ! lacrimal drainage system + +[Term] +id: UBERON:0001771 +name: pupil +def: "the central circular aperture of the iris through which light rays enter the eye" [ISBN:0-683-40008-8, MP:0001317] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "pupils" RELATED PLURAL [ZFA:0001283] +xref: AAO:0010351 +xref: FMA:58252 +xref: GAID:918 +xref: http://en.wikipedia.org/wiki/Pupil +xref: http://linkedlifedata.com/resource/umls/id/C0034121 +xref: http://www.snomedbrowser.com/Codes/Details/35146001 +xref: MA:0001292 +xref: MESH:D011680 +xref: NCIT:C33429 +xref: OpenCyc:Mx4rvViBr5wpEbGdrcN5Y29ycA +xref: TAO:0001283 +xref: UMLS:C0034121 {source="ncithesaurus:Pupil"} +xref: VHOG:0000116 +xref: XAO:0000283 +xref: ZFA:0001283 +is_a: UBERON:0000464 {source="AAO", source="FMA"} ! anatomical space +relationship: contributes_to_morphology_of UBERON:0001769 ! iris +relationship: part_of UBERON:0001769 ! iris + +[Term] +id: UBERON:0001772 +name: corneal epithelium +def: "the smooth stratified squamous epithelium that covers the outer surface of the cornea" [MESH:A09.371.060.217.325, MGI:smb, MP:0006000] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "anterior corneal epithelium" EXACT [] +synonym: "anterior endothelium of cornea" RELATED [BTO:0000287] +synonym: "cornea epithelial tissue" EXACT [OBOL:automatic] +synonym: "cornea epithelium" EXACT [OBOL:automatic] +synonym: "e. anterius corneae" RELATED LATIN [http://en.wikipedia.org/wiki/Corneal_epithelium] +synonym: "endothelium anterius corneae" RELATED [BTO:0000287] +synonym: "endothelium camerae anterioris bulbi" RELATED [BTO:0000287] +synonym: "endothelium corneale" RELATED [BTO:0000287] +synonym: "epithelial tissue of cornea" EXACT [OBOL:automatic] +synonym: "epithelium anterius (cornea)" EXACT [] +synonym: "epithelium anterius corneae" EXACT LATIN [FMA:58263, FMA:TA] +synonym: "epithelium corneæ anterior layer" EXACT [] +synonym: "epithelium of cornea" EXACT [] +synonym: "epithelium posterius corneae" RELATED [BTO:0000287] +synonym: "external epithelium of cornea" EXACT [] +xref: BTO:0000287 +xref: CALOHA:TS-0173 +xref: Corneal:epithelium +xref: EFO:0001917 +xref: EHDAA2:0000319 +xref: EMAPA:17162 +xref: FMA:58263 +xref: GAID:895 +xref: http://linkedlifedata.com/resource/umls/id/C0459875 +xref: http://www.snomedbrowser.com/Codes/Details/368825001 +xref: MA:0001243 +xref: MESH:D019573 +xref: NCIT:C12928 +xref: TAO:0002187 +xref: UMLS:C0459875 {source="ncithesaurus:Corneal_Epithelium"} +xref: ZFA:0001683 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0015808 ! eye epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: bounding_layer_of UBERON:0000964 ! cornea +relationship: bounding_layer_of UBERON:0000964 ! cornea +relationship: contributes_to_morphology_of UBERON:0000964 ! cornea +relationship: develops_from UBERON:0000076 {source="ISBN:0781772214"} ! external ectoderm +relationship: part_of UBERON:0000964 ! cornea + +[Term] +id: UBERON:0001773 +name: sclera +def: "Opaque fibrous outer layer of the eyeball[ZFA,Kardong,WP]." [http://en.wikipedia.org/wiki/Sclera, ZFIN:ZDB-PUB-050701-15] +comment: Disease notes: implicated in rheumatoid arthritis. +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "scleral capsule" RELATED [] +xref: AAO:0010354 +xref: BTO:0001606 +xref: EMAPA:19027 +xref: EV:0100342 +xref: FMA:58269 +xref: GAID:911 +xref: http://en.wikipedia.org/wiki/Sclera +xref: http://linkedlifedata.com/resource/umls/id/C0036410 +xref: http://www.snomedbrowser.com/Codes/Details/181163006 +xref: MA:0000280 +xref: MESH:D012590 +xref: NCIT:C12784 +xref: OpenCyc:Mx4rv7yR55wpEbGdrcN5Y29ycA +xref: UMLS:C0036410 {source="ncithesaurus:Sclera"} +xref: VHOG:0001274 +xref: XAO:0000183 +xref: ZFA:0005563 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: contributes_to_morphology_of UBERON:0000019 ! camera-type eye +relationship: develops_from UBERON:0003314 {source="ISBN:0781772214"} ! eye mesenchyme +relationship: part_of UBERON:0012430 {source="FMA"} ! tunica fibrosa of eyeball + +[Term] +id: UBERON:0001774 +name: skeletal muscle of trunk +def: "A skeletal muscle organ that is part of the trunk region." [http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +subset: vertebrate_core +synonym: "body musculature" EXACT [ZFA:0000473] +synonym: "muscle of trunk" EXACT [FMA:58274] +synonym: "muscle organ of torso" EXACT [OBOL:automatic] +synonym: "muscle organ of trunk" EXACT [OBOL:automatic] +synonym: "torso muscle organ" EXACT [OBOL:automatic] +synonym: "trunk muscle" EXACT [] +synonym: "trunk muscle organ" EXACT [OBOL:automatic] +synonym: "trunk musculature" EXACT [] +xref: AAO:0000611 +xref: EMAPA:35888 +xref: FMA:58274 +xref: MA:0000514 +xref: TAO:0000473 +xref: XAO:0003230 +xref: ZFA:0000473 +is_a: UBERON:0005177 ! trunk region element +is_a: UBERON:0014892 ! skeletal muscle organ +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0002100 ! trunk +relationship: part_of UBERON:0004479 {source="prolog"} ! musculature of trunk + +[Term] +id: UBERON:0001775 +name: ciliary body +def: "the thickened portion of the vascular tunic, which lies between the choroid and the iris, composed of ciliary muscle and ciliary processes" [http://en.wikipedia.org/wiki/Ciliary_body, ISBN:0-683-40008-8, MP:0005099] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "anterior uvea" RELATED [] +synonym: "ciliary bodies" RELATED PLURAL [VHOG:0000102] +synonym: "corpus ciliare" RELATED LATIN [http://en.wikipedia.org/wiki/Ciliary_body] +synonym: "corpus ciliare" RELATED [http://en.wikipedia.org/wiki/Ciliary_body] +synonym: "ocular ciliary body" EXACT [] +xref: AAO:0010341 +xref: BTO:0000260 +xref: CALOHA:TS-0694 +xref: Ciliary:body +xref: EMAPA:19065 +xref: EV:0100346 +xref: FMA:58295 +xref: GAID:916 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1571 +xref: http://linkedlifedata.com/resource/umls/id/C0008779 +xref: http://www.snomedbrowser.com/Codes/Details/263340007 +xref: MA:0000264 +xref: MESH:D002924 +xref: NCIT:C12345 +xref: UMLS:C0008779 {source="ncithesaurus:Ciliary_Body"} +xref: VHOG:0000102 +xref: XAO:0000186 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: contributes_to_morphology_of UBERON:0011892 ! anterior uvea +relationship: develops_from UBERON:0002346 {source="ISBN:0781772214"} ! neurectoderm +relationship: has_part UBERON:0001605 ! ciliary muscle +relationship: has_part UBERON:0010427 ! ciliary processes +relationship: part_of UBERON:0011892 ! anterior uvea + +[Term] +id: UBERON:0001776 +name: optic choroid +def: "vascular layer containing connective tissue, of the eye lying between the retina and the sclera. The choroid provides oxygen and nourishment to the outer layers of the retina. Along with the ciliary body and iris, the choroid forms the uveal tract[WP]." [http://en.wikipedia.org/wiki/Choroid] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "chorioid" RELATED [BTO:0001829] +synonym: "choroid" EXACT [MA:0000263] +synonym: "choroid coat" EXACT [http://en.wikipedia.org/wiki/Choroid] +synonym: "choroidea" EXACT [http://en.wikipedia.org/wiki/Choroid] +synonym: "choroidea" RELATED LATIN [http://en.wikipedia.org/wiki/Choroid] +synonym: "eye choroid" EXACT [VHOG:0001568] +synonym: "optic choroid" RELATED [ZFA:0005229] +synonym: "posterior uvea" EXACT [http://en.wikipedia.org/wiki/Uvea#Regions] +xref: BTO:0001829 +xref: CALOHA:TS-2054 +xref: EMAPA:19077 +xref: EV:0100347 +xref: FMA:58298 +xref: GAID:913 +xref: http://en.wikipedia.org/wiki/Choroid +xref: http://linkedlifedata.com/resource/umls/id/C0008520 +xref: http://www.snomedbrowser.com/Codes/Details/181172003 +xref: MA:0000263 +xref: MESH:D002829 +xref: NCIT:C12344 +xref: TAO:0005229 +xref: UMLS:C0008520 {source="ncithesaurus:Choroid"} +xref: VHOG:0001568 +xref: ZFA:0005229 +is_a: UBERON:0002203 ! vasculature of eye +disjoint_from: UBERON:0011892 {source="lexical"} ! anterior uvea +relationship: adjacent_to UBERON:0000966 ! retina +relationship: adjacent_to UBERON:0001773 ! sclera +relationship: adjacent_to UBERON:0011892 ! anterior uvea +relationship: contributes_to_morphology_of UBERON:0001768 ! uvea +relationship: part_of UBERON:0001768 {source="MA"} ! uvea +relationship: part_of UBERON:0019207 ! chorioretinal region + +[Term] +id: UBERON:0001777 +name: substantia propria of cornea +def: "the lamellated connective tissue of the cornea between the Bowman and Descemet membranes" [ISBN:0-683-40008-8, MESH:A09.371.060.217.228, MP:0005300] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "corneal stroma" EXACT [MA:0001245] +synonym: "stroma of cornea" EXACT [] +synonym: "substantia propria" BROAD [] +synonym: "substantia propria corneae" EXACT LATIN [FMA:58306, FMA:TA] +xref: CALOHA:TS-1138 +xref: Corneal:stroma +xref: EFO:0002514 +xref: EMAPA:17602 +xref: FMA:58306 +xref: GAID:893 +xref: http://linkedlifedata.com/resource/umls/id/C0010040 +xref: http://www.snomedbrowser.com/Codes/Details/362511000 +xref: MA:0001245 +xref: MESH:D003319 +xref: NCIT:C12699 +xref: TAO:0002189 +xref: UMLS:C0010040 {source="ncithesaurus:Corneal_Stroma"} +xref: ZFA:0001685 +is_a: UBERON:0003891 ! stroma +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0003891 ! stroma +intersection_of: part_of UBERON:0000964 ! cornea +relationship: adjacent_to UBERON:0004367 ! Descemet's membrane +relationship: adjacent_to UBERON:0004370 ! anterior limiting lamina of cornea +relationship: contributes_to_morphology_of UBERON:0000964 ! cornea +relationship: develops_from UBERON:0007213 {inferred_by="cjm", source="ISBN:0781772214", source="Wikipedia"} ! mesenchyme derived from head neural crest +relationship: part_of UBERON:0000964 ! cornea + +[Term] +id: UBERON:0001778 +name: ciliary epithelium +def: "A double layer covering the ciliary body that produces aqueous humor." [http://en.wikipedia.org/wiki/Ciliary_body#Ciliary_epithelium] +synonym: "ciliary body epithelium" EXACT [FMA:58464] +synonym: "epithelium of ciliary body" EXACT [FMA:58464] +synonym: "ocular ciliary epithelium" EXACT [] +xref: BTO:0001770 +xref: CALOHA:TS-0695 +xref: Ciliary_epithelium +xref: EMAPA:35239 +xref: FMA:58464 +xref: http://linkedlifedata.com/resource/umls/id/C0459736 +xref: http://www.snomedbrowser.com/Codes/Details/280870004 +xref: MA:0001238 +xref: NCIT:C32314 +xref: UMLS:C0459736 {source="ncithesaurus:Ciliary_Epithelium"} +is_a: UBERON:0000488 {source="FMA"} ! atypical epithelium +is_a: UBERON:0015808 ! eye epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001775 ! ciliary body +relationship: part_of UBERON:0001775 {source="MA"} ! ciliary body +relationship: produces UBERON:0001796 {source="Wikipedia"} ! aqueous humor of eyeball + +[Term] +id: UBERON:0001779 +name: iris stroma +def: "The delicate vascular connective tissue that lies between the anterior surface of the iris and the pars iridica retinae." [http://en.wikipedia.org/wiki/Iris_stroma, http://www.drugs.com/dict/stroma-of-iris.html] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "iridial stroma" EXACT [] +synonym: "stroma of iris" EXACT [] +xref: EMAPA:35451 +xref: FMA:58526 +xref: http://www.snomedbrowser.com/Codes/Details/280882008 +xref: Iris:stroma +xref: MA:0002777 +xref: ZFA:0005569 +is_a: UBERON:0003891 ! stroma +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0003891 ! stroma +intersection_of: part_of UBERON:0001769 ! iris +relationship: contributes_to_morphology_of UBERON:0001769 ! iris +relationship: part_of UBERON:0001769 ! iris + +[Term] +id: UBERON:0001780 +name: spinal nerve +def: "the any of the paired peripheral nerves formed by the union of the dorsal and ventral spinal roots from each spinal cord segment[MP,modified]" [MESH:A08.800.800.720, MP:0001077] +subset: pheno_slim +subset: uberon_slim +synonym: "backbone nerve" EXACT [OBOL:automatic] +synonym: "nerve of backbone" EXACT [OBOL:automatic] +synonym: "nerve of spinal column" EXACT [OBOL:automatic] +synonym: "nerve of spine" EXACT [OBOL:automatic] +synonym: "nerve of vertebral column" EXACT [OBOL:automatic] +synonym: "nervi spinales" RELATED LATIN [http://en.wikipedia.org/wiki/Spinal_nerve] +synonym: "spinal column nerve" EXACT [OBOL:automatic] +synonym: "spinal nerve tree" EXACT [] +synonym: "spinal nerves" RELATED PLURAL [BAMS:spin] +synonym: "spine nerve" EXACT [OBOL:automatic] +synonym: "vertebral column nerve" EXACT [OBOL:automatic] +xref: AAO:0011101 +xref: BAMS:spin +xref: BTO:0000870 +xref: EHDAA2:0001898 +xref: EMAPA:16989 +xref: FMA:5858 +xref: GAID:841 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1228 +xref: http://linkedlifedata.com/resource/umls/id/C0037941 +xref: http://www.snomedbrowser.com/Codes/Details/361099009 +xref: MA:0000233 +xref: MESH:D013127 +xref: NCIT:C12792 +xref: OpenCyc:Mx4rwK_iFJwpEbGdrcN5Y29ycA +xref: Spinal:nerve +xref: UMLS:C0037941 {source="ncithesaurus:Spinal_Nerve"} +xref: VHOG:0000824 +xref: XAO:0003101 +is_a: UBERON:0001021 ! nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: extends_fibers_into UBERON:0002240 ! spinal cord +relationship: extends_fibers_into UBERON:0002240 ! spinal cord + +[Term] +id: UBERON:0001781 +name: layer of retina +def: "Any of the layers that make up the retina[MP]." [MP:0003727] +subset: pheno_slim +subset: vertebrate_core +synonym: "retina layer" EXACT [] +synonym: "retina neuronal layer" EXACT [MP:0006069] +synonym: "retinal layer" EXACT [] +synonym: "retinal neuronal layer" EXACT [MP:0006069] +xref: AAO:0010353 +xref: EMAPA:35742 +xref: FMA:58617 +xref: http://linkedlifedata.com/resource/umls/id/C0459649 +xref: http://www.snomedbrowser.com/Codes/Details/280657006 +xref: MA:0001319 +xref: NCIT:C49328 +xref: UMLS:C0459649 {source="ncithesaurus:Retina_Layer"} +xref: XAO:0000266 +is_a: UBERON:0022303 ! nervous system cell part layer +relationship: contributes_to_morphology_of UBERON:0000966 ! retina +relationship: part_of UBERON:0000966 ! retina + +[Term] +id: UBERON:0001782 +name: pigmented layer of retina +def: "A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup[ZFA]. the pigmented cell layer just outside the neurosensory retina that nourishes retinal visual cells, and is firmly attached to the underlying choroid and overlying retinal visual cells[WP]." [http://en.wikipedia.org/wiki/Retinal_pigment_epithelium, ZFIN:curator] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "epithelium, retinal pigment" RELATED [BTO:0001177] +synonym: "outer pigmented layer of retina" EXACT [] +synonym: "p. pigmentosa retinae" RELATED LATIN [http://en.wikipedia.org/wiki/Retinal_pigment_epithelium] +synonym: "pigment epithelium of retina" EXACT [] +synonym: "pigmented epithelium" RELATED [] +synonym: "pigmented retina" RELATED [] +synonym: "pigmented retina epithelium" EXACT [] +synonym: "pigmented retinal epithelium" EXACT [] +synonym: "PRE" RELATED [] +synonym: "retinal pigment epithelium" EXACT [http://en.wikipedia.org/wiki/Retinal_pigment_epithelium, MP:0005201] +synonym: "retinal pigment layer" RELATED [VHOG:0000536] +synonym: "retinal pigmented epithelium" EXACT [ZFA:0000144] +synonym: "RPE" RELATED [] +synonym: "stratum pigmentosa retinae" RELATED LATIN [http://en.wikipedia.org/wiki/Retinal_pigment_epithelium] +synonym: "stratum pigmentosum (retina)" EXACT [] +synonym: "stratum pigmentosum retinae" EXACT LATIN [FMA:58627, FMA:TA] +xref: AAO:0011096 +xref: BTO:0001177 +xref: CALOHA:TS-0869 +xref: EHDAA2:0001465 +xref: EHDAA:4765 +xref: EMAPA:17172 +xref: EMAPA:35738 +xref: FMA:58627 +xref: http://en.wikipedia.org/wiki/Retinal_pigment_epithelium +xref: http://linkedlifedata.com/resource/umls/id/C0035322 +xref: http://www.snomedbrowser.com/Codes/Details/280662007 +xref: MA:0000279 +xref: MA:0003173 +xref: NCIT:C33470 +xref: TAO:0000144 +xref: UMLS:C0035322 {source="ncithesaurus:Retinal_Pigment_Epithelium"} +xref: VHOG:0000536 +xref: XAO:0003217 +xref: ZFA:0000144 +is_a: UBERON:0000957 ! lamina +is_a: UBERON:0001781 ! layer of retina +is_a: UBERON:0015808 ! eye epithelium +intersection_of: UBERON:0001781 ! layer of retina +intersection_of: immediate_transformation_of UBERON:0005424 ! presumptive retinal pigmented epithelium +relationship: adjacent_to UBERON:0001787 {source="Wikipedia"} ! photoreceptor layer of retina +relationship: adjacent_to UBERON:0003902 ! retinal neural layer +relationship: develops_from UBERON:0005424 ! presumptive retinal pigmented epithelium +relationship: immediate_transformation_of UBERON:0005424 ! presumptive retinal pigmented epithelium + +[Term] +id: UBERON:0001783 +name: optic disc +def: "The optic disc or optic nerve head is the location where ganglion cell axons exit the eye to form the optic nerve. There are no light sensitive rods or cones to respond to a light stimulus at this point. This causes a break in the visual field called 'the blind spot' or the 'physiological blind spot'. The optic nerve head in a normal human eye carries from 1 to 1.2 million neurons from the eye towards the brain. [WP,unvetted]." [http://en.wikipedia.org/wiki/Optic_disc] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "optic disk" EXACT [MESH:A08.800.800.120.680.660] +synonym: "optic disk" RELATED [http://en.wikipedia.org/wiki/Optic_disc] +synonym: "optic nerve disc" RELATED [http://en.wikipedia.org/wiki/Optic_disc] +synonym: "optic nerve head" RELATED [http://en.wikipedia.org/wiki/Optic_disc] +synonym: "optic papilla" RELATED [http://en.wikipedia.org/wiki/Optic_disc] +synonym: "physiologic blind spot" RELATED [http://en.wikipedia.org/wiki/Optic_disc] +synonym: "physiologic blind spot of mariotte" RELATED [http://en.wikipedia.org/wiki/Optic_disc] +xref: CALOHA:TS-2153 +xref: EFO:0001974 +xref: EHDAA2:0001307 +xref: EHDAA:9077 +xref: EMAPA:18238 +xref: FMA:58634 +xref: http://linkedlifedata.com/resource/umls/id/C0029127 +xref: http://www.snomedbrowser.com/Codes/Details/362518006 +xref: MA:0000278 +xref: MESH:D009898 +xref: NCIT:C12760 +xref: Optic:disc +xref: UMLS:C0029127 {source="ncithesaurus:Optic_Disc"} +xref: VHOG:0000551 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: extends_fibers_into UBERON:0000941 ! cranial nerve II +relationship: part_of UBERON:0000966 ! retina + +[Term] +id: UBERON:0001784 +name: obsolete macula lutea +comment: Obsoleted as it accidentally grouped macula and macula lutea +is_obsolete: true +consider: UBERON:0000053 +consider: UBERON:0000054 + +[Term] +id: UBERON:0001785 +name: cranial nerve +def: "Cranial nerves are nerves that emerge directly from the brain, in contrast to spinal nerves, which emerge from segments of the spinal cord." [http://en.wikipedia.org/wiki/Cranial_nerve] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "cranial nerves" RELATED [] +synonym: "cranial neural tree organ" EXACT [] +synonym: "nervus cranialis" RELATED LATIN [http://en.wikipedia.org/wiki/Cranial_nerve] +xref: AAO:0000108 +xref: BAMS:cran +xref: BIRNLEX:1623 +xref: BTO:0001104 +xref: Cranial:nerve +xref: EHDAA2:0000323 +xref: EMAPA:17264 +xref: FMA:5865 +xref: GAID:802 +xref: HBA:9299 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1227 +xref: http://linkedlifedata.com/resource/umls/id/C0010268 +xref: http://linkedlifedata.com/resource/umls/id/C1269897 +xref: http://www.snomedbrowser.com/Codes/Details/244447006 +xref: MA:0000215 +xref: MBA:967 +xref: MESH:D003391 +xref: NCIT:C12700 +xref: OpenCyc:Mx4rvWvJVpwpEbGdrcN5Y29ycA +xref: TAO:0000641 +xref: UMLS:C0010268 {source="BIRNLEX:1623"} +xref: UMLS:C0010268 {source="ncithesaurus:Cranial_Nerve"} +xref: UMLS:C1269897 {source="BIRNLEX:1623"} +xref: VHOG:0000279 +xref: XAO:0000429 +xref: XAO:0003089 +xref: ZFA:0000641 +is_a: UBERON:0011779 ! nerve of head region +is_a: UBERON:0034713 ! cranial neuron projection bundle +intersection_of: UBERON:0001021 ! nerve +intersection_of: anterior_to UBERON:0001780 ! spinal nerve +intersection_of: extends_fibers_into UBERON:0000955 ! brain +relationship: anterior_to UBERON:0001780 ! spinal nerve +relationship: has_developmental_contribution_from UBERON:0003099 ! cranial neural crest + +[Term] +id: UBERON:0001786 +name: fovea centralis +def: "A depression in the inner retinal surface within the macula lutea, the photoreceptor layer of which is entirely cones and which is specialized for maximum visual acuity" [http://en.wikipedia.org/wiki/Fovea, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "centre of fovea" RELATED [BIRNLEX:2543] +synonym: "centre of macula" EXACT [BIRNLEX:2543] +synonym: "fovea" BROAD [] +synonym: "fovea centralis in macula" EXACT [http://en.wikipedia.org/wiki/Fovea_centralis_in_macula] +xref: BIRNLEX:2543 +xref: CALOHA:TS-2055 +xref: EMAPA:37589 {source="MA:th"} +xref: EV:0100350 +xref: FMA:58658 +xref: GAID:910 +xref: http://en.wikipedia.org/wiki/Fovea_centralis_in_macula +xref: http://linkedlifedata.com/resource/umls/id/C0016622 +xref: http://linkedlifedata.com/resource/umls/id/C0450290 +xref: http://www.snomedbrowser.com/Codes/Details/264479005 +xref: MA:0001307 +xref: MESH:D005584 +xref: NCIT:C26463 +xref: UMLS:C0016622 {source="BIRNLEX:2543"} +xref: UMLS:C0016622 {source="ncithesaurus:Fovea_Centralis"} +xref: UMLS:C0450290 {source="BIRNLEX:2543"} +xref: VHOG:0001572 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0000053 ! macula lutea + +[Term] +id: UBERON:0001787 +name: photoreceptor layer of retina +def: "The layer within the retina where the photoreceptor cell receptor segments reside." [http://en.wikipedia.org/wiki/Layer_of_rods_and_cones, ZFA:0000143] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "layer of rods and cones" RELATED [] +synonym: "retina photoreceptor layer" EXACT [] +synonym: "retinal photoreceptor layer" EXACT [ZFA:0000143] +synonym: "retinal photoreceptor layers" RELATED PLURAL [ZFA:0000143] +synonym: "stratum segmentorum externorum et internorum (retina)" EXACT [] +synonym: "stratum segmentorum externorum et internorum retinae" EXACT LATIN [FMA:58680, FMA:TA] +xref: EMAPA:35686 +xref: FMA:58680 +xref: http://en.wikipedia.org/wiki/Layer_of_rods_and_cones +xref: http://linkedlifedata.com/resource/umls/id/C0229206 +xref: MA:0001308 +xref: NCIT:C32954 +xref: TAO:0000143 +xref: UMLS:C0229206 {source="ncithesaurus:Layer_of_the_Rods_and_Cones"} +xref: VHOG:0001165 +xref: XAO:0003215 +xref: ZFA:0000143 +is_a: UBERON:0001781 ! layer of retina +relationship: adjacent_to UBERON:0001788 ! outer limiting layer of retina +relationship: part_of UBERON:0003902 ! retinal neural layer + +[Term] +id: UBERON:0001788 +name: outer limiting layer of retina +def: "The row of jucntional complexes between the plasma membranes of rod segments and the Muller glia cells; this barrier separates the layer of inner and outer segments of the rods and cones from the outer nuclear layer and forms a blood-retina barrier[MP]." [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2109, MP:0010236] +subset: pheno_slim +subset: vertebrate_core +synonym: "blood retina barrier" RELATED [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2109] +synonym: "BRB" RELATED ABBREVIATION [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2109] +synonym: "external limiting lamina of retina" EXACT [] +synonym: "external limiting membrane" EXACT [ZFA:0001331] +synonym: "external limiting membrane of retina" EXACT [] +synonym: "outer limiting membrane" EXACT [XAO:0003224] +synonym: "outer limiting membrane of retina" EXACT [] +synonym: "outer limiting membranes" RELATED PLURAL [ZFA:0001331] +synonym: "retina external limiting lamina" EXACT [] +synonym: "retina outer limiting membrane" EXACT [MP:0010236] +synonym: "stratum limitans externum (retina)" EXACT [] +synonym: "stratum limitans externum retinae" EXACT LATIN [FMA:58683, FMA:TA] +xref: EMAPA:36518 +xref: FMA:58683 +xref: http://en.wikipedia.org/wiki/External_limiting_membrane +xref: http://linkedlifedata.com/resource/umls/id/C1518685 +xref: http://www.snomedbrowser.com/Codes/Details/280676008 +xref: MA:0001309 +xref: NCIT:C33235 +xref: TAO:0001331 +xref: UMLS:C1518685 {source="ncithesaurus:Outer_Limiting_Membrane"} +xref: XAO:0003224 +xref: ZFA:0001331 +is_a: UBERON:0007619 {source="MA"} ! limiting membrane of retina +relationship: adjacent_to UBERON:0001789 ! outer nuclear layer of retina + +[Term] +id: UBERON:0001789 +name: outer nuclear layer of retina +def: "The layer within the retina where the photoreceptor cell bodies reside." [ZFA:0001464] +subset: pheno_slim +subset: vertebrate_core +synonym: "external nuclear layer" RELATED [BTO:0005600] +synonym: "layer of outer granules" RELATED [BTO:0005600] +synonym: "neural retina outer nuclear layer" EXACT [EMAPA:19157] +synonym: "ONL" NARROW [] +synonym: "outer nuclear layer" BROAD [] +synonym: "retina outer nuclear layer" EXACT [] +synonym: "retina, outer nuclear layer" RELATED [BAMS:Ronl] +synonym: "retinal outer nuclear layer" EXACT [] +synonym: "retinal outer nuclear layers" RELATED PLURAL [ZFA:0001464] +synonym: "stratum nucleare externum (retina)" EXACT [] +synonym: "stratum nucleare externum retinae" EXACT LATIN [FMA:58684, FMA:TA] +xref: BAMS:Ronl +xref: BTO:0005600 +xref: EMAPA:19157 +xref: FMA:58684 +xref: http://en.wikipedia.org/wiki/Outer_nuclear_layer +xref: http://linkedlifedata.com/resource/umls/id/C0229210 +xref: http://www.snomedbrowser.com/Codes/Details/280678009 +xref: MA:0001315 +xref: NCIT:C33236 +xref: TAO:0001464 +xref: UMLS:C0229210 {source="ncithesaurus:Outer_Nuclear_Layer_of_Retina"} +xref: VHOG:0001170 +xref: XAO:0003219 +xref: ZFA:0001464 +is_a: UBERON:0001781 ! layer of retina +relationship: adjacent_to UBERON:0001790 ! outer plexiform layer of retina +relationship: contributes_to_morphology_of UBERON:0003902 ! retinal neural layer +relationship: part_of UBERON:0003902 ! retinal neural layer + +[Term] +id: UBERON:0001790 +name: outer plexiform layer of retina +def: "The layer within the retina where the bipolar cells synapse with the photoreceptor cells[ZFA]. Between the inner and outer nuclear layers, the outer plexiform layer (OPL) contains connections between the photoreceptors and bipolar and horizontal cells[GO]." [ZFA:0001330] +subset: pheno_slim +subset: vertebrate_core +synonym: "external plexiform layer" BROAD [BTO:0003174] +synonym: "OPL" NARROW ABBREVIATION [] +synonym: "outer plexiform layer" EXACT [BTO:0003174] +synonym: "retina outer plexiform layer" EXACT [] +synonym: "retina, outer plexiform layer" RELATED [BAMS:Ropl] +synonym: "retinal outer plexiform layer" EXACT [] +synonym: "retinal outer plexiform layers" RELATED PLURAL [ZFA:0001330] +synonym: "stratum plexiforme externum" EXACT [] +synonym: "stratum plexiforme externum retinae" EXACT LATIN [FMA:58685, FMA:TA] +xref: BAMS:Ropl +xref: BTO:0003174 +xref: EMAPA:35744 +xref: FMA:58685 +xref: http://en.wikipedia.org/wiki/Outer_plexiform_layer +xref: http://linkedlifedata.com/resource/umls/id/C0229217 +xref: http://www.snomedbrowser.com/Codes/Details/280684007 +xref: MA:0001316 +xref: NCIT:C33237 +xref: TAO:0001330 +xref: UMLS:C0229217 {source="ncithesaurus:Outer_Plexiform_Layer"} +xref: VHOG:0001171 +xref: XAO:0003218 +xref: ZFA:0001330 +is_a: UBERON:0001781 ! layer of retina +disjoint_from: UBERON:0005376 ! olfactory bulb external plexiform layer +relationship: adjacent_to UBERON:0001791 ! inner nuclear layer of retina +relationship: contributes_to_morphology_of UBERON:0003902 ! retinal neural layer +relationship: part_of UBERON:0003902 ! retinal neural layer + +[Term] +id: UBERON:0001791 +name: inner nuclear layer of retina +def: "Cytoarchitectural layer of retina containing closely packed cell bodies, the majority of which are bipolar cells (adapted from Wikipedia)." [NLX:93816] +comment: AO notes NLXANAT:1005031 appears to be retired +subset: pheno_slim +subset: vertebrate_core +synonym: "INL" NARROW [] +synonym: "inner nuclear layer" EXACT [] +synonym: "intermediate cell layer" EXACT [ZFA:0000119] +synonym: "layer of inner granules" RELATED [NLX:93816] +synonym: "neural retina inner nuclear layer" EXACT [EMAPA:19155] +synonym: "retina inner nuclear layer" EXACT [] +synonym: "retina, inner nuclear layer" RELATED [BAMS:Rinl] +synonym: "retinal inner nuclear layer" EXACT [] +synonym: "stratum nucleare internum" EXACT [] +synonym: "stratum nucleare internum retinae" EXACT LATIN [FMA:58686, FMA:TA] +xref: BAMS:Rinl +xref: BTO:0003176 +xref: EMAPA:19155 +xref: FMA:58686 +xref: http://en.wikipedia.org/wiki/Inner_nuclear_layer +xref: http://linkedlifedata.com/resource/umls/id/C0229211 +xref: http://www.snomedbrowser.com/Codes/Details/362520009 +xref: MA:0001311 +xref: NCIT:C32808 +xref: NLX:93816 +xref: NLXANAT:1005031 +xref: TAO:0000119 +xref: UMLS:C0229211 {source="ncithesaurus:Inner_Nuclear_Layer"} +xref: VHOG:0001167 +xref: XAO:0003221 +xref: ZFA:0000119 +is_a: UBERON:0001781 ! layer of retina +relationship: adjacent_to UBERON:0001795 ! inner plexiform layer of retina +relationship: contributes_to_morphology_of UBERON:0003902 ! retinal neural layer +relationship: part_of UBERON:0003902 ! retinal neural layer + +[Term] +id: UBERON:0001792 +name: ganglionic layer of retina +def: "Cytoarchitectural layer of retina that contains somata of retinal ganglion cells, bounded by the stratum opticum and the inner plexiform layer" [NLX:36500] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "ganglion cell layer" BROAD [FMA:58687, ZFA:0000024] +synonym: "ganglionic cell layer of retina" EXACT [FMA:58687] +synonym: "GCL layer" EXACT [] +synonym: "retina ganglion cell layer" EXACT [] +synonym: "retina ganglion layer" EXACT [] +synonym: "retina, ganglion cell layer" RELATED [BAMS:Rgcl] +synonym: "retinal ganglion cell layer" EXACT [] +synonym: "retinal ganglion layer" EXACT [MP:0008510] +synonym: "RGC layer" EXACT [] +synonym: "stratum ganglionicum (retina)" EXACT [FMA:58687] +synonym: "stratum ganglionicum retinae" RELATED LATIN [http://en.wikipedia.org/wiki/Ganglion_cell_layer] +xref: BAMS:Rgcl +xref: BTO:0003398 +xref: CALOHA:TS-0867 +xref: EMAPA:35739 +xref: FMA:58687 +xref: http://en.wikipedia.org/wiki/Ganglion_cell_layer +xref: http://www.snomedbrowser.com/Codes/Details/280670002 +xref: MA:0001310 +xref: NCIT:C32652 +xref: NLX:36500 +xref: NLXANAT:1005030 +xref: TAO:0000024 +xref: VHOG:0001166 +xref: XAO:0003223 +xref: ZFA:0000024 +is_a: UBERON:0001781 {source="FMA"} ! layer of retina +relationship: adjacent_to UBERON:0001793 ! nerve fiber layer of retina +relationship: contributes_to_morphology_of UBERON:0003902 ! retinal neural layer +relationship: part_of UBERON:0003902 {source="FMA"} ! retinal neural layer + +[Term] +id: UBERON:0001793 +name: nerve fiber layer of retina +alt_id: UBERON:0005888 +def: "layer of the retina formed by expansion of the fibers of the optic nerve" [ISBN:0-914294-08-3, MGI:smb] +subset: pheno_slim +subset: vertebrate_core +synonym: "layer of nerve fibers of retina" EXACT [] +synonym: "layer of nerve fibres of retina" EXACT [] +synonym: "nerve fiber layer" BROAD [ZFA:0001619] +synonym: "neural retina nerve fibre layer" RELATED [EMAPA:18591] +synonym: "optic fiber layer" EXACT [DMBA:15652] +synonym: "optic fiber layer" RELATED [VHOG:0001169] +synonym: "optic fiber layers" RELATED PLURAL [TAO:0002212] +synonym: "retina nerve fiber layer" EXACT [] +synonym: "stratum neurofibrarum (retina)" EXACT [] +synonym: "stratum neurofibrarum retinae" EXACT LATIN [FMA:58688, FMA:TA] +synonym: "stratum neurofibrum retinae" RELATED LATIN [http://en.wikipedia.org/wiki/Nerve_fiber_layer] +synonym: "stratum opticum of retina" EXACT [] +xref: DMBA:15652 +xref: EMAPA:18591 +xref: FMA:58688 +xref: http://en.wikipedia.org/wiki/Nervous_system_fiber_layer +xref: http://www.snomedbrowser.com/Codes/Details/280671003 +xref: MA:0001314 +xref: TAO:0002212 +xref: VHOG:0001169 +xref: XAO:0003220 +xref: ZFA:0001619 +is_a: UBERON:0001781 ! layer of retina +relationship: adjacent_to UBERON:0001794 ! inner limiting layer of retina +relationship: contributes_to_morphology_of UBERON:0003902 ! retinal neural layer +relationship: part_of UBERON:0003902 {source="FMA"} ! retinal neural layer + +[Term] +id: UBERON:0001794 +name: inner limiting layer of retina +def: "The row of fused Muller cell processes and astrocytes that separates the retinal nerve fiber layer from the vitreous[MP]." [MP:0010235] +subset: pheno_slim +subset: vertebrate_core +synonym: "ILM" BROAD ABBREVIATION [ZFA:0001029] +synonym: "inner limiting membrane" EXACT [XAO:0003222] +synonym: "inner limiting membrane of retina" EXACT [] +synonym: "inner limiting membranes" RELATED PLURAL [ZFA:0001029] +synonym: "internal limiting lamina of retina" EXACT [] +synonym: "internal limiting membrane of retina" EXACT [] +synonym: "retina inner limiting membrane" EXACT [MP:0010235] +synonym: "retina internal limiting lamina" EXACT [] +synonym: "stratum limitans internum retinae" EXACT LATIN [FMA:58689, FMA:TA] +xref: EMAPA:36519 +xref: FMA:58689 +xref: http://en.wikipedia.org/wiki/Inner_limiting_membrane +xref: http://linkedlifedata.com/resource/umls/id/C1512783 +xref: http://www.snomedbrowser.com/Codes/Details/280677004 +xref: MA:0001313 +xref: NCIT:C32807 +xref: TAO:0001029 +xref: UMLS:C1512783 {source="ncithesaurus:Inner_Limiting_Membrane"} +xref: XAO:0003222 +xref: ZFA:0001029 +is_a: UBERON:0007619 {source="MA"} ! limiting membrane of retina +relationship: adjacent_to UBERON:0001797 ! vitreous humor + +[Term] +id: UBERON:0001795 +name: inner plexiform layer of retina +def: "Cytoarchitectural layer of the retina that is made up of a dense reticulum of fibrils formed by interlaced dendrites of retinal ganglion cells and cells of the inner nuclear layer (adapted from Wikipedia)" [NLX:20558] +subset: pheno_slim +subset: vertebrate_core +synonym: "inner plexiform layer" RELATED [BTO:0003175] +synonym: "internal plexiform layer of retina" RELATED [NLXANAT:1005032] +synonym: "IPL" NARROW ABBREVIATION [] +synonym: "retina inner plexiform layer" EXACT [] +synonym: "retina, inner plexiform layer" RELATED [BAMS:Ripl] +synonym: "retinal inner plexiform layer" EXACT [] +synonym: "retinal internal plexiform layer" RELATED [NLXANAT:1005032] +synonym: "stratum plexifome internum" RELATED [BTO:0003175] +synonym: "stratum plexiforme internum" EXACT [FMA:58704] +synonym: "stratum plexiforme internum retinae" RELATED LATIN [http://en.wikipedia.org/wiki/Inner_plexiform_layer] +xref: BAMS:Ripl +xref: BTO:0003175 +xref: EMAPA:35741 +xref: FMA:58704 +xref: http://en.wikipedia.org/wiki/Inner_plexiform_layer +xref: http://linkedlifedata.com/resource/umls/id/C0229221 +xref: http://www.snomedbrowser.com/Codes/Details/280682006 +xref: MA:0001312 +xref: NCIT:C32809 +xref: NLX:20558 +xref: NLXANAT:1005032 +xref: TAO:0001329 +xref: UMLS:C0229221 {source="ncithesaurus:Inner_Plexiform_Layer"} +xref: VHOG:0001168 +xref: XAO:0003225 +xref: ZFA:0001329 +is_a: UBERON:0001781 ! layer of retina +intersection_of: UBERON:0001781 ! layer of retina +intersection_of: adjacent_to UBERON:0001791 ! inner nuclear layer of retina +intersection_of: adjacent_to UBERON:0001792 ! ganglionic layer of retina +relationship: adjacent_to UBERON:0001791 ! inner nuclear layer of retina +relationship: adjacent_to UBERON:0001792 ! ganglionic layer of retina +relationship: contributes_to_morphology_of UBERON:0003902 ! retinal neural layer +relationship: part_of UBERON:0003902 ! retinal neural layer + +[Term] +id: UBERON:0001796 +name: aqueous humor of eyeball +def: "A thick watery refractive medium that fills the space between the lens and the cornea[WP]." [http://en.wikipedia.org/wiki/Aqueous_humor] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "aqueous humor" EXACT [] +synonym: "aqueous humour" EXACT [EHDAA2:0000139] +synonym: "humor aquosus" EXACT LATIN [FMA:58819, FMA:TA] +xref: Aqueous:humor +xref: EHDAA2:0000139 +xref: EHDAA:10196 +xref: EMAPA:18232 +xref: ENVO:02000024 +xref: FMA:58819 +xref: GAID:890 +xref: http://linkedlifedata.com/resource/umls/id/C0003662 +xref: http://www.snomedbrowser.com/Codes/Details/280587006 +xref: MA:0001236 +xref: MESH:D001082 +xref: NCIT:C13190 +xref: OpenCyc:Mx4rvdGd-5wpEbGdrcN5Y29ycA +xref: UMLS:C0003662 {source="ncithesaurus:Aqueous_Humor"} +xref: VHOG:0000548 +xref: ZFA:0005564 +is_a: UBERON:0006312 ! ocular refractive media +is_a: UBERON:0006314 ! bodily fluid +relationship: contributes_to_morphology_of UBERON:0001766 ! anterior chamber of eyeball +relationship: part_of UBERON:0001766 {notes="FMA def states A and P", notes="located_in in EHDAA2", source="VHOG"} ! anterior chamber of eyeball + +[Term] +id: UBERON:0001797 +name: vitreous humor +def: "A transparent, semigelatinous substance that fills the cavity behind the crystalline lens of the eye and in front of the retina" [MP:0002699] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "humor vitreous" EXACT [] +synonym: "humor vitreus" EXACT LATIN [FMA:58822, FMA:TA] +synonym: "humoral fluid" RELATED [BTO:0001451] +synonym: "ocular fluid" RELATED [BTO:0001451] +synonym: "portion of vitreous humor" BROAD [FMA:67388] +synonym: "vitreous" EXACT [ZFA:0005561] +synonym: "vitreous fluid" RELATED [BTO:0001451] +synonym: "vitreous humour" RELATED [] +synonym: "whole portion of vitreous humor" EXACT [FMA:58822] +xref: BTO:0001451 +xref: CALOHA:TS-0308 +xref: EMAPA:17837 +xref: ENVO:02000032 +xref: EV:0100344 +xref: FMA:58822 +xref: http://linkedlifedata.com/resource/umls/id/C0229096 +xref: MA:0001286 +xref: NCIT:C13323 +xref: OpenCyc:Mx4rv7ZIfZwpEbGdrcN5Y29ycA +xref: UMLS:C0229096 {source="ncithesaurus:Vitreous_Humor"} +xref: VHOG:0000795 +xref: Vitreous:humour +xref: ZFA:0005561 +is_a: UBERON:0006312 ! ocular refractive media +relationship: located_in UBERON:0005606 ! hyaloid cavity +relationship: part_of UBERON:0001798 ! vitreous body + +[Term] +id: UBERON:0001798 +name: vitreous body +def: "Gelatinous mucoid tissue that is composed of vitreous humor and fills the cavity behind the crystalline lens of the eye and in front of the retina[MP,modified]" [MP:0002699] +subset: pheno_slim +subset: uberon_slim +xref: CALOHA:TS-0308 +xref: FMA:58827 +xref: GAID:919 +xref: http://linkedlifedata.com/resource/umls/id/C0042905 +xref: http://www.snomedbrowser.com/Codes/Details/181170006 +xref: MA:0002462 +xref: MESH:A09.371.943 +xref: NCIT:C33884 +xref: UMLS:C0042905 {source="ncithesaurus:Vitreous_Body"} +is_a: UBERON:0003566 ! head connective tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0011825 {source="FMA"} ! loose connective tissue +relationship: composed_primarily_of UBERON:0001797 ! vitreous humor +relationship: has_developmental_contribution_from UBERON:0002346 {notes="neural ectoderm of optic cup", source="ISBN:0781772214"} ! neurectoderm +relationship: part_of UBERON:0001799 ! vitreous chamber of eyeball + +[Term] +id: UBERON:0001799 +name: vitreous chamber of eyeball +def: "The chamber in the eyeball enclosing the vitreous humor, bounded anteriorly by the lens and ciliary body and posteriorly by the posterior wall of the eyeball[BTO,modified]." [BTO:0002087] +subset: uberon_slim +synonym: "camera postrema" EXACT [FMA:58848] +synonym: "camera postrema bulbi oculi" EXACT LATIN [FMA:58848, FMA:TA] +synonym: "camera postrema bulbi oculi" EXACT [FMA:TA] +synonym: "camera vitrea" EXACT [FMA:58848] +synonym: "camera vitrea bulbi" EXACT [FMA:58848] +synonym: "postremal chamber" EXACT [FMA:58848] +synonym: "postremal chamber of eyeball" EXACT [FMA:58848] +synonym: "vitreous chamber" EXACT [FMA:58848] +xref: BTO:0002087 +xref: EMAPA:37805 {source="MA:th"} +xref: FMA:58848 +xref: http://linkedlifedata.com/resource/umls/id/C0229095 +xref: MA:0002461 +xref: NCIT:C33885 +xref: UMLS:C0229095 {source="ncithesaurus:Vitreous_Chamber"} +xref: Vitreous:chamber +is_a: UBERON:0006311 ! chamber of eyeball +intersection_of: UBERON:0006311 ! chamber of eyeball +intersection_of: location_of UBERON:0001798 ! vitreous body +relationship: location_of UBERON:0001798 ! vitreous body +relationship: part_of UBERON:0001802 ! posterior segment of eyeball + +[Term] +id: UBERON:0001800 +name: sensory ganglion +def: "The clusters of neurons in the somatic peripheral nervous system which contain the cell bodies of sensory nerve axons, interneurons and non-neuronal supporting cells." [MP:0000960] +subset: pheno_slim +synonym: "ganglion sensorium" EXACT LATIN [] +xref: AEO:0001000 +xref: BTO:0005630 +xref: EMAPA:36596 +xref: FMA:5885 +xref: http://linkedlifedata.com/resource/umls/id/C0206429 +xref: MA:0002566 +xref: MESH:D017950 +xref: NCIT:C13060 +xref: UMLS:C0206429 {source="ncithesaurus:Sensory_Ganglion"} +is_a: UBERON:0000045 ! ganglion +intersection_of: UBERON:0000045 ! ganglion +intersection_of: extends_fibers_into UBERON:0001027 ! sensory nerve +relationship: extends_fibers_into UBERON:0001027 ! sensory nerve + +[Term] +id: UBERON:0001801 +name: anterior segment of eyeball +def: "any of the parts of the eye that lie in front of, or ventral to, the lens (inclusive)" [ISBN:0-683-40008-8, MESH:A09.371.060, MP:0005193] +subset: pheno_slim +subset: vertebrate_core +synonym: "anterior eye segment" EXACT [] +synonym: "anterior segment eye" EXACT [ZFA:0005566] +synonym: "anterior segment of eye" EXACT [] +synonym: "anterior segment of the eye" EXACT [] +synonym: "eye anterior segment" EXACT [] +synonym: "segmentum anterius (bulbus oculi)" EXACT [] +synonym: "segmentum anterius bulbi oculi" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_segment_of_eyeball] +xref: EMAPA:36594 +xref: FMA:58865 +xref: http://en.wikipedia.org/wiki/Anterior_segment_of_eyeball +xref: http://linkedlifedata.com/resource/umls/id/C0003153 +xref: http://www.snomedbrowser.com/Codes/Details/280658001 +xref: MA:0002484 +xref: MESH:D000869 +xref: NCIT:C12668 +xref: UMLS:C0003153 {source="ncithesaurus:Anterior_Eye_Segment"} +xref: ZFA:0005566 +is_a: UBERON:0000063 ! organ subunit +is_a: UBERON:0004121 ! ectoderm-derived structure +disjoint_from: UBERON:0001802 {source="lexical"} ! posterior segment of eyeball +relationship: contributes_to_morphology_of UBERON:0000019 ! camera-type eye +relationship: in_anterior_side_of UBERON:0010230 {source="cjm"} ! eyeball of camera-type eye +relationship: part_of UBERON:0010230 {source="FMA"} ! eyeball of camera-type eye + +[Term] +id: UBERON:0001802 +name: posterior segment of eyeball +def: "any of the parts of the eye that lie in back of, or dorsal to, the lens (but not inclusive)" [ISBN:0-683-40008-8, MP:0005195] +subset: pheno_slim +subset: vertebrate_core +synonym: "eye posterior segment" EXACT [] +synonym: "posterior eye segment" EXACT [] +synonym: "posterior segment eye" EXACT [ZFA:0005567] +synonym: "posterior segment of eye" EXACT [] +synonym: "posterior segment of the eye" EXACT [] +synonym: "segmentum posterius (bulbus oculi)" EXACT [] +synonym: "segmentum posterius bulbi oculi" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_segment_of_eyeball] +xref: EMAPA:36595 +xref: FMA:58868 +xref: http://en.wikipedia.org/wiki/Posterior_segment_of_eyeball +xref: http://linkedlifedata.com/resource/umls/id/C0278450 +xref: http://www.snomedbrowser.com/Codes/Details/280659009 +xref: MA:0002485 +xref: NCIT:C12906 +xref: UMLS:C0278450 {source="ncithesaurus:Posterior_Eye_Segment"} +xref: ZFA:0005567 +is_a: UBERON:0000063 ! organ subunit +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: contributes_to_morphology_of UBERON:0000019 ! camera-type eye +relationship: in_posterior_side_of UBERON:0010230 {source="cjm"} ! eyeball of camera-type eye +relationship: part_of UBERON:0010230 {source="FMA"} ! eyeball of camera-type eye + +[Term] +id: UBERON:0001803 +name: epithelium of lens +def: "A layer of epithelial cells that is part of the eye." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: vertebrate_core +synonym: "epithelial tissue of eye lens" EXACT [OBOL:automatic] +synonym: "epithelial tissue of lens" EXACT [OBOL:automatic] +synonym: "epithelium lentis" EXACT LATIN [FMA:58871, FMA:TA] +synonym: "epithelium of eye lens" EXACT [OBOL:automatic] +synonym: "eye lens epithelial tissue" EXACT [OBOL:automatic] +synonym: "eye lens epithelium" EXACT [OBOL:automatic] +synonym: "lens epithelial tissue" EXACT [OBOL:automatic] +synonym: "lens epithelium" EXACT [] +xref: BTO:0001873 +xref: CALOHA:TS-0543 +xref: EMAPA:32871 +xref: FMA:58871 +xref: http://www.snomedbrowser.com/Codes/Details/362523006 +xref: Lens_Epithelium +xref: MA:0001301 +xref: TAO:0001326 +xref: XAO:0004094 +xref: ZFA:0001326 +is_a: UBERON:0000484 ! simple cuboidal epithelium +is_a: UBERON:0015808 ! eye epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000965 ! lens of camera-type eye +relationship: contributes_to_morphology_of UBERON:0000965 ! lens of camera-type eye +relationship: part_of UBERON:0000965 ! lens of camera-type eye + +[Term] +id: UBERON:0001804 +name: capsule of lens +def: "the elastic, clear, membrane-like structure, that is outer most layer of the lens" [http://www.ncbi.nlm.nih.gov/pubmed/15483628, MGI:smb, MP:0003236] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "capsula lentis" EXACT LATIN [] +synonym: "lens capsule" EXACT [] +xref: EHDAA2:0000977 +xref: EMAPA:18237 +xref: FMA:58881 +xref: http://linkedlifedata.com/resource/umls/id/C0229232 +xref: http://www.snomedbrowser.com/Codes/Details/244500004 +xref: Lens_capsule +xref: MA:0001300 +xref: NCIT:C32975 +xref: UMLS:C0229232 {source="ncithesaurus:Lens_Capsule"} +xref: VHOG:0000550 +xref: ZFA:0005574 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005764 ! acellular membrane +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000476 ! acellular anatomical structure +intersection_of: bounding_layer_of UBERON:0000965 ! lens of camera-type eye +relationship: bounding_layer_of UBERON:0000965 ! lens of camera-type eye +relationship: develops_from UBERON:0005614 {source="EHDAA2"} ! lens anterior epithelium +relationship: part_of UBERON:0000965 ! lens of camera-type eye + +[Term] +id: UBERON:0001805 +name: autonomic ganglion +def: "ganglion that has dendrites that form a junction between autonomic nerves originating from the central nervous system and autonomic nerves innervating their target organs in the periphery. There are two subtypes, sympathetic ganglion and parasympathetic ganglion." [http://en.wikipedia.org/wiki/Autonomic_ganglion] +subset: uberon_slim +synonym: "autonomic nervous system ganglion" EXACT [OBOL:automatic] +synonym: "ganglion autonomicum" RELATED LATIN [http://en.wikipedia.org/wiki/Autonomic_ganglion] +synonym: "ganglion of autonomic nervous system" EXACT [OBOL:automatic] +synonym: "ganglion of visceral nervous system" EXACT [OBOL:automatic] +synonym: "visceral nervous system ganglion" EXACT [OBOL:automatic] +xref: AEO:0001001 +xref: Autonomic:ganglion +xref: CALOHA:TS-2340 +xref: EMAPA:17157 +xref: EMAPA:18221 +xref: FMA:5889 +xref: http://linkedlifedata.com/resource/umls/id/C0017068 +xref: MA:0000220 +xref: MESH:D005725 +xref: NCIT:C12720 +xref: UMLS:C0017068 {source="ncithesaurus:Autonomic_Ganglion"} +is_a: UBERON:0003338 ! ganglion of peripheral nervous system +intersection_of: UBERON:0000045 ! ganglion +intersection_of: part_of UBERON:0002410 ! autonomic nervous system +relationship: extends_fibers_into UBERON:0034728 ! autonomic nerve +relationship: part_of UBERON:0002410 ! autonomic nervous system + +[Term] +id: UBERON:0001806 +name: sympathetic ganglion +def: "A ganglion of the sympathetic nervous system. Examples: paravertebral and the prevertebral ganglia, which include the sympathetic chain ganglia, the superior, middle, and inferior cervical ganglia, and the aorticorenal, celiac, and stellate ganglia" [http://orcid.org/0000-0002-6601-2165, MP:0001008] +subset: pheno_slim +subset: uberon_slim +synonym: "ganglion of sympathetic nervous system" EXACT [OBOL:automatic] +synonym: "ganglion of sympathetic part of autonomic division of nervous system" EXACT [OBOL:automatic] +synonym: "ganglion sympatheticum" EXACT [] +synonym: "ganglion sympathicum" RELATED LATIN [http://en.wikipedia.org/wiki/Sympathetic_ganglion] +synonym: "ganglion sympathicum" RELATED [BTO:0001333] +synonym: "sympathetic nervous system ganglion" EXACT [OBOL:automatic] +synonym: "sympathetic part of autonomic division of nervous system ganglion" EXACT [OBOL:automatic] +xref: AAO:0010773 +xref: BTO:0001333 +xref: CALOHA:TS-0994 +xref: EHDAA2:0001969 +xref: EMAPA:17157 +xref: FMA:5890 +xref: http://linkedlifedata.com/resource/umls/id/C0017071 +xref: http://www.snomedbrowser.com/Codes/Details/362485003 +xref: MA:0000226 +xref: NCIT:C12467 +xref: Sympathetic:ganglion +xref: UMLS:C0017071 {source="ncithesaurus:Sympathetic_Ganglion"} +is_a: UBERON:0001805 ! autonomic ganglion +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0000045 ! ganglion +intersection_of: part_of UBERON:0000013 ! sympathetic nervous system +relationship: contributes_to_morphology_of UBERON:0000013 ! sympathetic nervous system +relationship: develops_from UBERON:0003083 {source="https://doi.org/10.1101/gr.157586.113", source="ISBN:0073040584"} ! trunk neural crest +relationship: extends_fibers_into UBERON:0034729 ! sympathetic nerve +relationship: part_of UBERON:0000013 ! sympathetic nervous system + +[Term] +id: UBERON:0001807 +name: paravertebral ganglion +alt_id: UBERON:0005466 +def: "Trunk ganglion which is part of a bilaterally paired set of sympathetic ganglia located anterior and lateral to the spinal cord." [http://en.wikipedia.org/wiki/Paravertebral_ganglion, ZFIN:curator] +subset: uberon_slim +subset: vertebrate_core +synonym: "ganglia of sympathetic trunk" RELATED [http://en.wikipedia.org/wiki/Paravertebral_ganglia] +synonym: "ganglia trunci sympathici" RELATED LATIN [http://en.wikipedia.org/wiki/Paravertebral_ganglia] +synonym: "ganglion of sympathetic trunk" EXACT [] +synonym: "ganglion trunci sympathetici" EXACT LATIN [] +synonym: "ganglion trunci sympathici" EXACT LATIN [FMA:5891, FMA:TA] +synonym: "paravertebral ganglia" RELATED PLURAL [FMA:80128] +synonym: "paravertebral ganglion" RELATED [http://en.wikipedia.org/wiki/Paravertebral_ganglia] +synonym: "sympathetic chain ganglia" RELATED PLURAL [http://en.wikipedia.org/wiki/Paravertebral_ganglia] +synonym: "sympathetic chain ganglion" EXACT [] +xref: EHDAA2:0001403 +xref: EHDAA:5635 +xref: FMA:5891 +xref: http://www.snomedbrowser.com/Codes/Details/324478000 +xref: MA:0003100 +xref: Paravertebral:ganglion +xref: TAO:0001556 +xref: ZFA:0001556 +is_a: UBERON:0001806 ! sympathetic ganglion +is_a: UBERON:0007134 {source="ZFA"} ! trunk ganglion +intersection_of: UBERON:0000045 ! ganglion +intersection_of: part_of UBERON:0000407 ! sympathetic trunk +relationship: fma_set_term FMA:80128 +relationship: part_of UBERON:0000407 ! sympathetic trunk + +[Term] +id: UBERON:0001808 +name: parasympathetic ganglion +def: "Ganglion containing neurons that receive innervation from parasympathetic neurons in the central nervous system and subserves parasympathetic functions through innervation of smooth muscle, cardiac muscle and glands." [NLXANAT:100303] +subset: pheno_slim +subset: uberon_slim +synonym: "ganglion parasympathicum" RELATED LATIN [http://en.wikipedia.org/wiki/Parasympathetic_ganglion] +synonym: "ganglion parasympathicum" RELATED [BTO:0001256] +xref: BTO:0001256 +xref: EHDAA2:0001400 +xref: EMAPA:32813 +xref: FMA:5894 +xref: http://linkedlifedata.com/resource/umls/id/C0017069 +xref: http://www.snomedbrowser.com/Codes/Details/279284004 +xref: MA:0002469 +xref: NCIT:C52557 +xref: NLXANAT:100303 +xref: Parasympathetic:ganglion +xref: UMLS:C0017069 {source="ncithesaurus:Parasympathetic_Ganglion"} +is_a: UBERON:0001805 ! autonomic ganglion +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0001805 ! autonomic ganglion +intersection_of: part_of UBERON:0000011 ! parasympathetic nervous system +relationship: contributes_to_morphology_of UBERON:0000011 ! parasympathetic nervous system +relationship: extends_fibers_into UBERON:0004293 ! parasympathetic nerve +relationship: part_of UBERON:0000011 ! parasympathetic nervous system + +[Term] +id: UBERON:0001809 +name: enteric ganglion +def: "." [http://en.wikipedia.org/wiki/Enteric_ganglia] +subset: pheno_slim +synonym: "intramural ganglion" EXACT [FMA:5896] +xref: EMAPA:35312 +xref: Enteric:ganglia +xref: FMA:5896 +xref: http://linkedlifedata.com/resource/umls/id/C0501399 +xref: MA:0001144 +xref: NCIT:C52709 +xref: UMLS:C0501399 {source="ncithesaurus:Enteric_Ganglion"} +is_a: UBERON:0001808 {source="FMA"} ! parasympathetic ganglion +intersection_of: UBERON:0001808 ! parasympathetic ganglion +intersection_of: part_of UBERON:0002005 ! enteric nervous system +relationship: contributes_to_morphology_of UBERON:0002005 ! enteric nervous system +relationship: part_of UBERON:0002005 ! enteric nervous system + +[Term] +id: UBERON:0001810 +name: nerve plexus +def: "Anatomical junction where subdivisions of two or more neural trees interconnect with one another to form a network through which nerve fibers of the constituent nerve trees become regrouped; together with other nerve plexuses, nerves and ganglia, it constitutes the peripheral nervous system. Examples: cervical nerve plexus, brachial nerve plexus, sacral nerve plexus[FMA]." [FMA:5901, http://en.wikipedia.org/wiki/Nervous_system_plexus] +subset: uberon_slim +synonym: "plexus" BROAD [] +xref: AEO:0000138 +xref: BTO:0000205 +xref: EHDAA2:0003138 +xref: EHDAA:3780 +xref: EMAPA:37683 {source="MA:th"} +xref: FMA:5901 +xref: http://en.wikipedia.org/wiki/Nervous_system_plexus +xref: http://linkedlifedata.com/resource/umls/id/C0501403 +xref: http://www.snomedbrowser.com/Codes/Details/122455009 +xref: MA:0002407 +xref: NCIT:C12929 +xref: UMLS:C0501403 {source="ncithesaurus:Nerve_Plexus"} +is_a: UBERON:0003714 ! neural tissue + +[Term] +id: UBERON:0001811 +name: conjunctiva +def: "the mucous membrane that lines the inner surface of the eyelids and the front of the eyeball" [MESH:A09.371.060.200, MGI:csmith, MP:0001310] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "conjunctivae" EXACT PLURAL [XAO:0000182] +synonym: "conjunctivas" EXACT PLURAL [XAO:0000182] +synonym: "tunica conjunctiva" EXACT LATIN [FMA:TA] +synonym: "wall of conjunctival sac" EXACT [FMA:59011] +xref: AAO:0010343 +xref: BTO:0003415 +xref: CALOHA:TS-2232 +xref: EFO:0000374 +xref: EMAPA:18233 +xref: EV:0100340 +xref: FMA:59011 +xref: GAID:898 +xref: http://en.wikipedia.org/wiki/Conjunctiva +xref: http://linkedlifedata.com/resource/umls/id/C0009758 +xref: http://www.snomedbrowser.com/Codes/Details/181161008 +xref: MA:0000265 +xref: MESH:A09.371.192 +xref: NCIT:C12341 +xref: UMLS:C0009758 {source="ncithesaurus:Conjunctiva"} +xref: XAO:0000182 +is_a: UBERON:0000060 {source="FMA"} ! anatomical wall +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: adjacent_to UBERON:0001711 ! eyelid +relationship: adjacent_to UBERON:0001773 ! sclera +relationship: contributes_to_morphology_of UBERON:0001801 ! anterior segment of eyeball +relationship: develops_from UBERON:0000076 {source="ISBN:0781772214"} ! external ectoderm +relationship: part_of UBERON:0005908 {source="cjm"} ! conjunctival sac +relationship: part_of UBERON:0010409 {source="MA"} ! ocular surface region + +[Term] +id: UBERON:0001812 +name: palpebral conjunctiva +def: "A thin transparent mucous membrane that covers the posterior surface of the eyelids and is continuous with the bulbar conjunctiva at the conjunctival fornicies." [MP:0013394] +comment: lines the eyeballs +subset: pheno_slim +synonym: "conjunctival layer of eyelids" EXACT [MP:0013394] +synonym: "eyelid conjunctiva" RELATED [] +synonym: "tarsal conjunctiva" EXACT [http://en.wikipedia.org/wiki/Conjunctiva] +synonym: "tunica conjunctiva palpebrum" EXACT [] +xref: FMA:59025 +xref: http://linkedlifedata.com/resource/umls/id/C0229274 +xref: http://www.snomedbrowser.com/Codes/Details/280666005 +xref: MA:0001265 +xref: NCIT:C12901 +xref: UMLS:C0229274 {source="ncithesaurus:Palpebral_Conjunctiva"} +is_a: UBERON:0010305 {source="FMA"} ! subdivision of conjunctiva +relationship: adjacent_to UBERON:0001711 ! eyelid +relationship: continuous_with UBERON:0010306 ! bulbar conjunctiva +relationship: part_of UBERON:0001711 {source="FMA", source="MA"} ! eyelid + +[Term] +id: UBERON:0001813 +name: spinal nerve plexus +def: "an intermingling of fiber fascicles from adjacent spinal nerves to form a network." [http://www.medilexicon.com/medicaldictionary.php?t=70024] +synonym: "plexus nervorum spinalium" EXACT LATIN [FMA:5903, FMA:TA] +synonym: "plexus of spinal nerves" EXACT [FMA:5903] +synonym: "somatic nerve plexus" EXACT [FMA:5903] +synonym: "spinal nerve plexus" EXACT [FMA:5903] +xref: EHDAA2:0001899 +xref: EMAPA:16987 +xref: FMA:5903 +xref: http://linkedlifedata.com/resource/umls/id/C0228603 +xref: http://www.snomedbrowser.com/Codes/Details/42280003 +xref: MA:0000235 +xref: NCIT:C49601 +xref: UMLS:C0228603 {source="ncithesaurus:Spinal_Nerve_Plexus"} +xref: VHOG:0000925 +is_a: UBERON:0001810 ! nerve plexus +intersection_of: UBERON:0001810 ! nerve plexus +intersection_of: extends_fibers_into UBERON:0001780 ! spinal nerve +relationship: extends_fibers_into UBERON:0001780 ! spinal nerve + +[Term] +id: UBERON:0001814 +name: brachial nerve plexus +def: "An arrangement of nerve fibers, running from the spine where it proceeds through the neck then the axilla and into the arm where it innervates skin and muscle. [WP,modified]." [http://en.wikipedia.org/wiki/Brachial_plexus, UBERON:cjm] +subset: uberon_slim +synonym: "brachial plexus" EXACT [MA:0001180] +synonym: "plexus brachialis" RELATED [http://en.wikipedia.org/wiki/Brachial_plexus] +synonym: "plexus brachialis" RELATED LATIN [http://en.wikipedia.org/wiki/Brachial_plexus] +xref: Brachial:plexus +xref: EHDAA2:0000180 +xref: EHDAA:3782 +xref: EMAPA:16988 +xref: FMA:5906 +xref: GAID:842 +xref: http://linkedlifedata.com/resource/umls/id/C0006090 +xref: http://www.snomedbrowser.com/Codes/Details/181002002 +xref: MA:0001180 +xref: MESH:D001917 +xref: NCIT:C12682 +xref: OpenCyc:Mx4rwNWmO5wpEbGdrcN5Y29ycA +xref: UMLS:C0006090 {source="ncithesaurus:Brachial_Plexus"} +xref: VHOG:0000372 +is_a: UBERON:0001813 ! spinal nerve plexus +intersection_of: UBERON:0001813 ! spinal nerve plexus +intersection_of: innervates UBERON:0002102 ! forelimb +relationship: innervates UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0001815 +name: lumbosacral nerve plexus +def: "An arrangement of nerve fibers, running from the spine that travels to the pelvic appendage where it innervates skin and muscle." [UBERON:cjm] +subset: uberon_slim +synonym: "lumbosacral plexus" EXACT [] +synonym: "plexus lumbosacralis" EXACT LATIN [FMA:5907, FMA:TA] +synonym: "plexus lumbosacralis" RELATED LATIN [http://en.wikipedia.org/wiki/Lumbosacral_plexus] +xref: BAMS:lsp +xref: EHDAA2:0001040 +xref: EHDAA:4673 +xref: EMAPA:17587 +xref: FMA:5907 +xref: GAID:849 +xref: http://linkedlifedata.com/resource/umls/id/C0024093 +xref: http://www.snomedbrowser.com/Codes/Details/181049003 +xref: Lumbosacral:plexus +xref: MA:0001181 +xref: MESH:D008160 +xref: NCIT:C52805 +xref: OpenCyc:Mx4rvzYo75wpEbGdrcN5Y29ycA +xref: UMLS:C0024093 {source="ncithesaurus:Lumbosacral_Plexus"} +xref: VHOG:0000926 +is_a: UBERON:0001813 ! spinal nerve plexus +intersection_of: UBERON:0001813 ! spinal nerve plexus +intersection_of: innervates UBERON:0002103 ! hindlimb +relationship: innervates UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0001816 +name: autonomic nerve plexus +def: "A nerve plexus that is part of an autonomic nervous system [Automatically generated definition]." [OBOL:automatic] +synonym: "autonomic plexus" EXACT [] +synonym: "plexus autonomicus" EXACT LATIN [FMA:5910, FMA:TA] +synonym: "plexus nervosus visceralis" EXACT LATIN [FMA:5910, FMA:TA] +synonym: "plexus visceralis" EXACT LATIN [FMA:5910, FMA:TA] +synonym: "visceral nerve plexus" EXACT [] +synonym: "visceral plexus" EXACT [] +xref: EMAPA:18224 +xref: FMA:5910 +xref: http://www.snomedbrowser.com/Codes/Details/362482000 +xref: MA:0000221 +is_a: UBERON:0001810 ! nerve plexus +intersection_of: UBERON:0001810 ! nerve plexus +intersection_of: part_of UBERON:0002410 ! autonomic nervous system +relationship: part_of UBERON:0002410 ! autonomic nervous system + +[Term] +id: UBERON:0001817 +name: lacrimal gland +def: "The lacrimal glands are paired almond-shaped glands, located in or near the orbital region, that secrete the aqueous layer of the tear film.[WP]." [http://en.wikipedia.org/wiki/Lacrimal_gland, http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "glandula lacrimalis" EXACT LATIN [http://en.wikipedia.org/wiki/Lacrimal_gland] +synonym: "glandula praeorbitalis" RELATED SENSU [http://en.wikipedia.org/wiki/Preorbital_gland, NCBITaxon:91561] +synonym: "lacrimal-preorbital gland" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "preorbital gland" RELATED SENSU [http://en.wikipedia.org/wiki/Preorbital_gland, NCBITaxon:91561] +synonym: "tear gland" RELATED [BTO:0000044] +xref: BTO:0000044 +xref: CALOHA:TS-0512 +xref: EFO:0001389 +xref: EMAPA:35463 +xref: EV:0100339 +xref: FMA:59101 +xref: http://linkedlifedata.com/resource/umls/id/C0022907 +xref: http://www.snomedbrowser.com/Codes/Details/181147003 +xref: Lacrimal:gland +xref: MA:0001296 +xref: NCIT:C12346 +xref: Preorbital:gland +xref: UMLS:C0022907 {source="ncithesaurus:Lacrimal_Gland"} +xref: VHOG:0001476 +is_a: UBERON:0002365 ! exocrine gland +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004859 ! eye gland +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015154 ! lateral gland of orbital region +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0001750 ! lacrimal apparatus +disjoint_from: UBERON:0004187 ! Harderian gland +relationship: contributes_to_morphology_of UBERON:0001750 ! lacrimal apparatus +relationship: develops_from UBERON:0022284 ! lacrimal gland bud +relationship: part_of UBERON:0001750 ! lacrimal apparatus + +[Term] +id: UBERON:0001818 +name: tarsal gland +def: "A modified lobulated sebaceous gland at the rim of an eyelid, responsible for the supply of meibum." [http://en.wikipedia.org/wiki/Meibomian_gland, http://www.ncbi.nlm.nih.gov/pubmed/20664693, ISBN:0123813611] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "gland of Meibom" EXACT [] +synonym: "glandula tarsales" EXACT [] +synonym: "Meibomian gland" EXACT [MA:0001249] +synonym: "palpebral gland" RELATED [MA:0001249] +synonym: "tarsoconjunctival gland" RELATED [BTO:0004165] +xref: BTO:0004165 +xref: FMA:59104 +xref: GAID:899 +xref: http://linkedlifedata.com/resource/umls/id/C0025181 +xref: http://www.snomedbrowser.com/Codes/Details/280585003 +xref: MA:0001249 +xref: Meibomian:gland +xref: MESH:D008537 +xref: NCIT:C33075 +xref: UMLS:C0025181 {source="ncithesaurus:Meibomian_Gland"} +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0013231 ! sebaceous gland of eyelid +is_a: UBERON:0015251 {source="ISBN:0123813611", source="MA"} ! modified sebaceous gland +intersection_of: UBERON:0001821 ! sebaceous gland +intersection_of: part_of UBERON:0004772 ! eyelid tarsus +relationship: contributes_to_morphology_of UBERON:0001711 ! eyelid +relationship: part_of UBERON:0004772 ! eyelid tarsus + +[Term] +id: UBERON:0001819 +name: palpebral fissure +def: "Orifice separating upper and lower eyelids. In the human adult this measures about 10mm vertically and 30 mm horizontally. It can be reduced in size in fetal alcohol syndrome. In Trisomy 9 the palpebral fissures can be upslanting. [WP,modified]." [http://en.wikipedia.org/wiki/Palpebral_fissure] +subset: pheno_slim +subset: uberon_slim +synonym: "rima palpebrarum" RELATED LATIN [http://en.wikipedia.org/wiki/Palpebral_fissure] +xref: FMA:59110 +xref: http://www.snomedbrowser.com/Codes/Details/280576003 +xref: MA:0001266 +xref: Palpebral:fissure +is_a: UBERON:0000161 {source="FMA"} ! orifice +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: adjacent_to UBERON:0001712 ! upper eyelid +relationship: adjacent_to UBERON:0001713 ! lower eyelid +relationship: part_of UBERON:0000019 ! camera-type eye + +[Term] +id: UBERON:0001820 +name: sweat gland +def: "any of the coil glands of the skin that secrete sweat" [ISBN:0-683-40008-8, MP:0000674] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "glandula sudorifera" RELATED [BTO:0001331] +synonym: "sudoriferous gland" RELATED [BTO:0001331] +synonym: "sudoriparous gland" RELATED [BTO:0001331] +xref: BTO:0001331 +xref: CALOHA:TS-0993 +xref: EMAPA:35844 +xref: EV:0100160 +xref: FMA:59152 +xref: GAID:943 +xref: http://linkedlifedata.com/resource/umls/id/C0038989 +xref: http://www.snomedbrowser.com/Codes/Details/361700009 +xref: MA:0000150 +xref: MESH:D013545 +xref: NCIT:C33712 +xref: OpenCyc:Mx4rvVjx15wpEbGdrcN5Y29ycA +xref: Sweat:gland +xref: UMLS:C0038989 {source="ncithesaurus:Sweat_Gland"} +xref: VHOG:0001467 +is_a: UBERON:0007771 ! epidermis gland +is_a: UBERON:0019319 ! exocrine gland of integumental system +intersection_of: UBERON:0002530 ! gland +intersection_of: produces UBERON:0001089 ! sweat +relationship: develops_from UBERON:0005089 {evidence="definitional"} ! sweat gland placode +relationship: produces UBERON:0001089 ! sweat + +[Term] +id: UBERON:0001821 +name: sebaceous gland +def: "A holocrine gland that secretes sebum into the hair follicles, or in hairless areas into ducts.[MP]." [http://en.wikipedia.org/wiki/Sebaceous_gland, MP:0000647] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "glandula sebacea" RELATED LATIN [http://en.wikipedia.org/wiki/Sebaceous_gland] +synonym: "glandula sebaceae" RELATED [BTO:0001980] +synonym: "sebaceous follicle" RELATED [BTO:0001980] +xref: BTO:0001980 +xref: CALOHA:TS-2384 +xref: EMAPA:35754 +xref: EV:0100161 +xref: FMA:59160 +xref: GAID:900 +xref: http://linkedlifedata.com/resource/umls/id/C0036505 +xref: http://www.snomedbrowser.com/Codes/Details/361697005 +xref: MA:0002565 +xref: MESH:D012627 +xref: NCIT:C33519 +xref: Sebaceous:gland +xref: UMLS:C0036505 {source="ncithesaurus:Sebaceous_Gland"} +xref: VHOG:0001468 +is_a: UBERON:0007771 ! epidermis gland +is_a: UBERON:0012344 {source="Wikipedia"} ! holocrine gland +is_a: UBERON:0019319 ! exocrine gland of integumental system +relationship: develops_from UBERON:0005088 {evidence="definitional"} ! sebaceous gland placode +relationship: part_of UBERON:0011932 ! pilosebaceous unit +relationship: produces UBERON:0001866 ! sebum + +[Term] +id: UBERON:0001822 +name: orbital septum +def: "A membranous sheet that acts as the anterior boundary of the orbit. It extends from the orbital rims to the eyelids[WP]." [http://en.wikipedia.org/wiki/Orbital_septum] +subset: organ_slim +subset: uberon_slim +synonym: "septum orbitale" RELATED LATIN [http://en.wikipedia.org/wiki/Orbital_septum] +xref: EMAPA:37609 {source="MA:th"} +xref: FMA:59328 +xref: http://www.snomedbrowser.com/Codes/Details/368859002 +xref: MA:0001259 +xref: Orbital:septum +is_a: UBERON:0000094 ! membrane organ +is_a: UBERON:0003037 ! septum +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0002204 ! musculoskeletal system +relationship: part_of UBERON:0004772 ! eyelid tarsus +relationship: surrounds UBERON:0001697 ! orbit of skull + +[Term] +id: UBERON:0001823 +name: nasal cartilage +def: "One of the cartilage structures in the nose that provide form and support[WP]." [http://en.wikipedia.org/wiki/Nasal_cartilage] +subset: pheno_slim +subset: uberon_slim +synonym: "cartilage of nose" EXACT [] +xref: CALOHA:TS-0655 +xref: EMAPA:37681 {source="MA:th"} +xref: FMA:59502 +xref: http://linkedlifedata.com/resource/umls/id/C0225415 +xref: http://www.snomedbrowser.com/Codes/Details/278941001 +xref: MA:0001883 +xref: Nasal:cartilage +xref: NCIT:C49593 +xref: UMLS:C0225415 {source="ncithesaurus:Nasal_Cartilage"} +is_a: UBERON:0002418 {source="MA"} ! cartilage tissue +is_a: UBERON:0003566 ! head connective tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0007844 ! cartilage element +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0000004 ! nose +relationship: location_of UBERON:0000402 ! nasal vestibule +relationship: part_of UBERON:0000004 ! nose + +[Term] +id: UBERON:0001824 +name: mucosa of larynx +def: "The mucous lining of the larynx, which is composed of squamous epithelium in the upper larynx and ciliated columnar epithelium in the lower larynx." [MP:0002261] +synonym: "laryngeal mucosa" EXACT [] +synonym: "laryngeal mucous membrane" RELATED [EMAPA:18334] +synonym: "larynx mucosa" EXACT [] +synonym: "larynx mucosa of organ" EXACT [OBOL:automatic] +synonym: "larynx mucous membrane" EXACT [OBOL:automatic] +synonym: "larynx organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of organ of larynx" EXACT [OBOL:automatic] +synonym: "mucous membrane of larynx" EXACT [] +synonym: "organ mucosa of larynx" EXACT [OBOL:automatic] +synonym: "tunica mucosa laryngis" EXACT LATIN [FMA:59662, FMA:TA] +xref: EMAPA:18334 +xref: FMA:59662 +xref: GAID:301 +xref: http://linkedlifedata.com/resource/umls/id/C0023053 +xref: http://www.snomedbrowser.com/Codes/Details/361940006 +xref: MA:0001766 +xref: MESH:D007820 +xref: NCIT:C49246 +xref: UMLS:C0023053 {source="ncithesaurus:Laryngeal_Mucosa"} +is_a: UBERON:0000379 ! tracheal mucosa +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001737 ! larynx +relationship: part_of UBERON:0001737 ! larynx + +[Term] +id: UBERON:0001825 +name: paranasal sinus +def: "the paired air-filled cavities surrounded by the bones of the face that are lined by mucous membranes and are continuous with the nasal cavity" [ISBN:0-683-40008-8, MP:0002240] +subset: pheno_slim +subset: uberon_slim +synonym: "nasal sinus" RELATED [GAID:355] +synonym: "sinus" BROAD [] +xref: CALOHA:TS-2082 +xref: EHDAA:6489 +xref: EMAPA:35662 +xref: EV:0100038 +xref: FMA:59679 +xref: GAID:355 +xref: http://linkedlifedata.com/resource/umls/id/C0030471 +xref: http://www.snomedbrowser.com/Codes/Details/181203001 +xref: MA:0000431 +xref: MESH:D010256 +xref: NCIT:C12763 +xref: Paranasal:sinuses +xref: UMLS:C0030471 {source="ncithesaurus:Paranasal_Sinus"} +is_a: UBERON:0002553 ! anatomical cavity +relationship: continuous_with UBERON:0001707 ! nasal cavity +relationship: contributes_to_morphology_of UBERON:0001004 ! respiratory system +relationship: fma_set_term FMA:76587 +relationship: part_of UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0003129 ! skull + +[Term] +id: UBERON:0001826 +name: nasal cavity mucosa +def: "The mucous membrane that lines the nasal cavity[MP]." [MP:0002238] +subset: pheno_slim +synonym: "mucosa of nose" EXACT [FMA:59684] +synonym: "mucous membrane of nose" EXACT [FMA:59684] +synonym: "nasal mucosa" RELATED [] +synonym: "tunica mucosa nasalis" EXACT [] +synonym: "tunica mucosa nasi" EXACT LATIN [FMA:59684, FMA:TA] +xref: BTO:0000912 +xref: CALOHA:TS-0657 +xref: EMAPA:36026 +xref: FMA:59684 +xref: GAID:302 +xref: http://en.wikipedia.org/wiki/Mucous_membrane_of_nose +xref: http://www.snomedbrowser.com/Codes/Details/310211009 +is_a: UBERON:0000379 ! tracheal mucosa +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0015788 ! olfactory apparatus chamber +relationship: bounding_layer_of UBERON:0015788 ! olfactory apparatus chamber +relationship: part_of UBERON:0015788 ! olfactory apparatus chamber + +[Term] +id: UBERON:0001827 +name: secretion of lacrimal gland +def: "Aqueous substance secreted by the lacrimal gland." [http://en.wikipedia.org/wiki/Tear, http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "lacrimal fluid" EXACT [] +synonym: "lacrimal gland secretion" EXACT [] +synonym: "lacrimal secretion" EXACT [] +synonym: "tear" EXACT [FMA:59756] +synonym: "tear fluid" RELATED [BTO:0001499] +synonym: "tears" EXACT PLURAL [] +xref: BTO:0001499 +xref: CALOHA:TS-1016 +xref: EMAPA:36537 +xref: ENVO:02000034 +xref: FMA:59756 +xref: GAID:1173 +xref: galen:Tear +xref: galen:Tears +xref: http://en.wikipedia.org/wiki/Tear +xref: http://linkedlifedata.com/resource/umls/id/C0039409 +xref: MA:0002508 +xref: MESH:D013666 +xref: NCIT:C33739 +xref: UMLS:C0039409 {source="ncithesaurus:Tear"} +is_a: UBERON:0000456 ! secretion of exocrine gland +intersection_of: UBERON:0000456 ! secretion of exocrine gland +intersection_of: produced_by UBERON:0001817 ! lacrimal gland +relationship: produced_by UBERON:0001817 ! lacrimal gland + +[Term] +id: UBERON:0001828 +name: gingiva +def: "The fibrous investing tissue, covered by keratinized epithelium, that immediately surrounds a tooth and is contiguous with its periodontal ligament and with the mucosal tissues of the mouth[Glossary of Periodontal Terms 2001]." [http://en.wikipedia.org/wiki/Gingiva, ISBN:0013002015] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "gingival mucosa" RELATED [] +synonym: "gum" EXACT [FMA:59762] +synonym: "gum tissue" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "gums" EXACT [] +xref: BTO:0000519 +xref: CALOHA:TS-2074 +xref: EFO:0001925 +xref: EMAPA:35945 +xref: EV:0100064 +xref: FMA:59762 +xref: GAID:1257 +xref: galen:Gingiva +xref: http://en.wikipedia.org/wiki/Gingiva +xref: http://linkedlifedata.com/resource/umls/id/C0017562 +xref: http://www.snomedbrowser.com/Codes/Details/181224006 +xref: MA:0000342 +xref: MESH:A14.254.646.480 +xref: NCIT:C32677 +xref: OpenCyc:Mx4rvViWnZwpEbGdrcN5Y29ycA +xref: UMLS:C0017562 {source="ncithesaurus:Gingiva"} +xref: VHOG:0001269 +is_a: UBERON:0003729 ! mouth mucosa +relationship: adjacent_to UBERON:0004103 ! alveolar ridge +relationship: adjacent_to UBERON:0008266 ! periodontal ligament +relationship: continuous_with UBERON:0003729 {source="ISBN:0013002015"} ! mouth mucosa +relationship: part_of UBERON:0011595 ! jaw region + +[Term] +id: UBERON:0001829 +name: major salivary gland +def: "One of the three largest glands of the oral cavity that secrete most of the saliva, including the parotid, submandibular, and sublingual glands." [MP:0003792] +subset: organ_slim +subset: pheno_slim +xref: FMA:59788 +xref: galen:MajorSalivaryGland +xref: http://linkedlifedata.com/resource/umls/id/C0930553 +xref: http://www.snomedbrowser.com/Codes/Details/303049006 +xref: MA:0002478 +xref: NCIT:C12999 +xref: UMLS:C0930553 {source="ncithesaurus:Major_Salivary_Gland"} +is_a: UBERON:0001044 ! saliva-secreting gland +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0000165 ! mouth + +[Term] +id: UBERON:0001830 +name: minor salivary gland +def: "One of the smaller, largely mucus-secreting, exocrine glands of the oral cavity, consisting of the labial, buccal, molar, lingual, and palatine glands[MP]." [http://en.wikipedia.org/wiki/Salivary_gland#Minor_Salivary_Glands, MP:0003791] +comment: There are over 600 minor salivary glands located throughout the oral cavity within the lamina propria of the oral mucosa. They are 1-2mm in diameter and unlike the other glands, they are not encapsulated by connective tissue only surrounded by it. The gland is usually a number of acini connected in a tiny lobule. A minor salivary gland may have a common excretory duct with another gland, or may have its own excretory duct. Their secretion is mainly mucous in nature (except for von Ebner's glands) and have many functions such as coating the oral cavity with saliva[WP]. +subset: organ_slim +subset: pheno_slim +xref: EMAPA:35574 +xref: FMA:59789 +xref: GAID:940 +xref: galen:MinorSalivaryGland +xref: http://linkedlifedata.com/resource/umls/id/C0036099 +xref: http://www.snomedbrowser.com/Codes/Details/362177001 +xref: MA:0002479 +xref: MESH:D012470 +xref: Minor_Salivary_Glands +xref: NCIT:C33129 +xref: UMLS:C0036099 {source="ncithesaurus:Minor_Salivary_Gland"} +is_a: UBERON:0001044 ! saliva-secreting gland +relationship: part_of UBERON:0005334 ! oral lamina propria + +[Term] +id: UBERON:0001831 +name: parotid gland +def: "The parotid gland is the largest of the salivary glands. It is found wrapped around the mandibular ramus, and it secretes saliva through Stensen's duct into the oral cavity, to facilitate mastication and swallowing. [WP,unvetted]." [http://en.wikipedia.org/wiki/Parotid_gland] +comment: The mouse parotid, exorbital lacrimal gland and exocrine pancreas have similar histological appearances[ISBN:0123813611] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "glandula parotidea" RELATED LATIN [http://en.wikipedia.org/wiki/Parotid_gland] +synonym: "parotid" EXACT [] +xref: AAO:0010095 +xref: BTO:0001004 +xref: CALOHA:TS-0748 +xref: EFO:0002558 +xref: EMAPA:18537 +xref: EV:0100060 +xref: FMA:59790 +xref: GAID:938 +xref: galen:ParotidGland +xref: http://linkedlifedata.com/resource/umls/id/C0030580 +xref: http://www.snomedbrowser.com/Codes/Details/181234002 +xref: MA:0001585 +xref: MESH:D010306 +xref: NCIT:C12427 +xref: OpenCyc:Mx4rvqwyg5wpEbGdrcN5Y29ycA +xref: Parotid:gland +xref: UMLS:C0030580 {source="ncithesaurus:Parotid_Gland"} +xref: VHOG:0000308 +is_a: UBERON:0000409 ! serous gland +is_a: UBERON:0001829 ! major salivary gland +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0012102 ! buccal salivary gland +disjoint_from: UBERON:0013219 ! parotoid gland +relationship: develops_from UBERON:0008801 ! parotid gland primordium +relationship: in_lateral_side_of UBERON:0001710 {source="FMA-abduced-lr"} ! lower jaw region +relationship: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0001832 +name: sublingual gland +def: "the small mucin-producing salivary glands in the floor of the mouth beneath the tongue, anterior to the submandibular gland" [MGI:hdene, MP:0004035] +subset: pheno_slim +subset: uberon_slim +synonym: "ductus sublingualis" EXACT [] +synonym: "glandula sublingualis" RELATED LATIN [http://en.wikipedia.org/wiki/Sublingual_gland] +synonym: "Rivinus gland" RELATED [BTO:0001315] +synonym: "Rivinus' gland" EXACT [] +synonym: "sublingual salivary gland" RELATED [] +synonym: "submaxillary gland" RELATED [MA:0001589] +xref: BTO:0001315 +xref: CALOHA:TS-0987 +xref: EMAPA:18809 +xref: EV:0100062 +xref: FMA:59791 +xref: GAID:941 +xref: http://linkedlifedata.com/resource/umls/id/C0038553 +xref: http://www.snomedbrowser.com/Codes/Details/362176005 +xref: MA:0001588 +xref: MESH:D013361 +xref: NCIT:C12234 +xref: Sublingual:gland +xref: UMLS:C0038553 {source="ncithesaurus:Sublingual_Salivary_Gland"} +xref: VHOG:0000363 +is_a: UBERON:0001829 {source="FMA"} ! major salivary gland +disjoint_from: UBERON:0009964 ! crustacean maxillary gland +relationship: develops_from UBERON:0006297 ! sublingual gland primordium + +[Term] +id: UBERON:0001833 +name: lip +def: "One of the two fleshy folds which surround the opening of the mouth." [http://en.wikipedia.org/wiki/Lip, http://www.medterms.com/script/main/art.asp?articlekey=9458] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "labia oris" RELATED LATIN [http://en.wikipedia.org/wiki/Lip] +synonym: "lips" RELATED [] +xref: BTO:0001647 +xref: CALOHA:TS-0558 +xref: EMAPA:32839 +xref: FMA:59816 +xref: GAID:76 +xref: galen:Lip +xref: http://en.wikipedia.org/wiki/Lip +xref: http://linkedlifedata.com/resource/umls/id/C0023759 +xref: http://www.snomedbrowser.com/Codes/Details/181221003 +xref: MA:0000343 +xref: MESH:D008046 +xref: NCIT:C12220 +xref: OpenCyc:Mx4rvVi4U5wpEbGdrcN5Y29ycA +xref: TAO:0007006 +xref: UMLS:C0023759 {source="ncithesaurus:Lip"} +xref: VHOG:0000677 +xref: ZFA:0007006 +is_a: UBERON:0003102 {source="ZFA"} ! surface structure +disjoint_from: UBERON:0004084 ! genital labium +relationship: contributes_to_morphology_of UBERON:0000165 ! mouth +relationship: part_of UBERON:0000165 {source="BTO", source="FMA-implicit", source="VHOG", source="ZFA"} ! mouth +relationship: surrounds UBERON:0000166 {source="cjm"} ! oral opening + +[Term] +id: UBERON:0001834 +name: upper lip +alt_id: UBERON:0003391 +def: "Lip that covers the upper portion of the mouth.[TAO]." [http://en.wikipedia.org/wiki/Upper_lip, TAO:0001970] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "labium superius oris" RELATED LATIN [http://en.wikipedia.org/wiki/Upper_lip] +synonym: "upper jaw lip" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: EMAPA:17925 +xref: FMA:59817 +xref: http://www.snomedbrowser.com/Codes/Details/245776003 +xref: MA:0000919 +xref: OpenCyc:Mx4rvWPv7pwpEbGdrcN5Y29ycA +xref: TAO:0001970 +xref: Upper:lip +xref: VHOG:0001750 +xref: ZFA:0005226 +is_a: UBERON:0001833 ! lip +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001833 ! lip +intersection_of: part_of UBERON:0001709 ! upper jaw region +relationship: develops_from UBERON:0011592 ! future upper lip +relationship: immediate_transformation_of UBERON:0011592 ! future upper lip +relationship: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0001835 +name: lower lip +alt_id: UBERON:0003392 +def: "Lip that covers the lower portion of the mouth.[TAO]." [http://en.wikipedia.org/wiki/Lower_lip, TAO:0002060] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "labium inferius oris" RELATED LATIN [http://en.wikipedia.org/wiki/Lower_lip] +synonym: "lower jaw lip" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: EHDAA2:0001020 +xref: EMAPA:17909 +xref: FMA:59818 +xref: http://linkedlifedata.com/resource/umls/id/C0458583 +xref: http://www.snomedbrowser.com/Codes/Details/245777007 +xref: Lower:lip +xref: MA:0000921 +xref: NCIT:C94572 +xref: OpenCyc:Mx4rv842UpwpEbGdrcN5Y29ycA +xref: TAO:0002060 +xref: UMLS:C0458583 {source="ncithesaurus:Lower_Lip"} +xref: ZFA:0005225 +is_a: UBERON:0001833 ! lip +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001833 ! lip +intersection_of: part_of UBERON:0001710 ! lower jaw region +relationship: develops_from UBERON:0011596 ! future lower lip +relationship: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0001836 +name: saliva +def: "A fluid produced in the oral cavity by salivary glands, typically used in predigestion, but also in other functions." [GO:0046541, http://en.wikipedia.org/wiki/Saliva] +subset: uberon_slim +synonym: "sailva normalis" RELATED LATIN [http://en.wikipedia.org/wiki/Saliva] +synonym: "saliva atomaris" RELATED LATIN [http://en.wikipedia.org/wiki/Saliva] +synonym: "saliva molecularis" RELATED LATIN [http://en.wikipedia.org/wiki/Saliva] +synonym: "salivary gland secretion" EXACT [FMA:59862] +xref: BTO:0001202 +xref: CALOHA:TS-0891 +xref: EMAPA:36536 +xref: ENVO:02000036 +xref: FMA:59862 +xref: GAID:1167 +xref: galen:Saliva +xref: http://en.wikipedia.org/wiki/Saliva +xref: http://linkedlifedata.com/resource/umls/id/C0036087 +xref: MA:0002507 +xref: MAT:0000444 +xref: MESH:D012463 +xref: NCIT:C13275 +xref: OpenCyc:Mx4rvVjJ95wpEbGdrcN5Y29ycA +xref: UMLS:C0036087 {source="ncithesaurus:Saliva"} +is_a: UBERON:0000456 ! secretion of exocrine gland + +[Term] +id: UBERON:0001837 +name: duct of salivary gland +def: "The duct of a salivary gland." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "salivary duct" EXACT [] +synonym: "salivary gland duct" EXACT [] +synonym: "secretory duct" RELATED [BTO:0005115] +xref: BTO:0005115 +xref: EMAPA:35750 +xref: FMA:59908 +xref: GAID:939 +xref: http://www.snomedbrowser.com/Codes/Details/181238004 +xref: MA:0001586 +xref: MESH:D018987 +xref: NCIT:C32486 +xref: Salivary:duct +is_a: UBERON:0000025 ! tube +is_a: UBERON:0003928 ! digestive system duct +intersection_of: UBERON:0000058 ! duct +intersection_of: part_of UBERON:0001044 ! saliva-secreting gland +relationship: channel_for UBERON:0001836 ! saliva +relationship: channels_from UBERON:0001044 ! saliva-secreting gland +relationship: channels_into UBERON:0000165 ! mouth +relationship: contributes_to_morphology_of UBERON:0001044 ! saliva-secreting gland +relationship: part_of UBERON:0001044 ! saliva-secreting gland + +[Term] +id: UBERON:0001838 +name: sublingual duct +def: "A duct of a sublingual gland." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +xref: BTO:0004558 +xref: EMAPA:36564 +xref: FMA:59983 +xref: http://www.snomedbrowser.com/Codes/Details/281000009 +xref: MA:0002699 +xref: Sublingual:duct +is_a: UBERON:0001837 ! duct of salivary gland +intersection_of: UBERON:0001837 ! duct of salivary gland +intersection_of: part_of UBERON:0001832 ! sublingual gland +relationship: channels_from UBERON:0001832 ! sublingual gland +relationship: contributes_to_morphology_of UBERON:0001832 ! sublingual gland +relationship: part_of UBERON:0001832 ! sublingual gland + +[Term] +id: UBERON:0001839 +name: bony labyrinth +def: "A system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]." [http://en.wikipedia.org/wiki/Bony_labyrinth] +comment: Ideally we would place a spatially disjoint from relationship to membranous labyrinth, but there are many parts in common. this should be resolved. +subset: pheno_slim +subset: uberon_slim +synonym: "labyrinthus osseus" RELATED LATIN [http://en.wikipedia.org/wiki/Bony_labyrinth] +synonym: "osseous labyrinth" EXACT [] +synonym: "osseus labyrinth" RELATED [] +xref: AAO:0011078 +xref: Bony:labyrinth +xref: BTO:0004685 +xref: CALOHA:TS-2080 +xref: EMAPA:36580 +xref: EV:0100362 +xref: FMA:60179 +xref: http://linkedlifedata.com/resource/umls/id/C0458699 +xref: http://www.snomedbrowser.com/Codes/Details/279727008 +xref: MA:0000238 +xref: NCIT:C33227 +xref: UMLS:C0458699 {source="ncithesaurus:Osseous_Labyrinth"} +xref: VHOG:0001219 +xref: XAO:0000193 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0034921 ! multi organ part structure +relationship: part_of UBERON:0001694 {source="FMA", source="MA"} ! petrous part of temporal bone +relationship: part_of UBERON:0001846 {source="FMA"} ! internal ear +relationship: part_of UBERON:0004681 ! vestibular system + +[Term] +id: UBERON:0001840 +name: semicircular canal +def: "One of three half-circular, interconnected tubes located inside each ear[WP]." [http://en.wikipedia.org/wiki/Semicircular_canal] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "canalis semicircularis" RELATED LATIN [http://en.wikipedia.org/wiki/Semicircular_canal] +synonym: "ductus semicirculares" RELATED PLURAL [BTO:0003383, FMA:71880, FMA:TA] +synonym: "scc" RELATED [TAO:0000431] +synonym: "semicircular canals" EXACT PLURAL [TAO:0000431] +synonym: "semicircular ducts" RELATED PLURAL [XAO:0000198] +xref: AAO:0011098 +xref: BTO:0003383 +xref: CALOHA:TS-2164 +xref: EMAPA:32832 +xref: EV:0100365 +xref: FMA:60186 +xref: GAID:776 +xref: http://linkedlifedata.com/resource/umls/id/C0036622 +xref: http://www.snomedbrowser.com/Codes/Details/279757004 +xref: MA:0000249 +xref: MESH:D012665 +xref: NCIT:C33527 +xref: Semicircular:canal +xref: TAO:0000431 +xref: UMLS:C0036622 {source="ncithesaurus:Semicircular_Canal"} +xref: VHOG:0001144 +xref: XAO:0000198 +xref: ZFA:0000431 +is_a: UBERON:0000025 {source="GO"} ! tube +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0003051 ! ear vesicle +relationship: part_of UBERON:0001849 {source="OG"} ! membranous labyrinth + +[Term] +id: UBERON:0001841 +name: anterior semicircular canal +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "anterior semicircular canals" RELATED [] +synonym: "anterior semicircular duct" RELATED [] +synonym: "canalis semircularis posterior" RELATED [AAO:0000058] +synonym: "rostral vertical semicircular canal" RELATED [] +synonym: "superior semicircular canal" EXACT [] +xref: AAO:0000058 +xref: EHDAA2:0001959 +xref: EHDAA:7802 +xref: EMAPA:17299 +xref: FMA:60187 +xref: http://en.wikipedia.org/wiki/Anterior_semicircular_canal +xref: http://linkedlifedata.com/resource/umls/id/C1288332 +xref: http://www.snomedbrowser.com/Codes/Details/279764002 +xref: MA:0001207 +xref: NCIT:C33695 +xref: TAO:0000314 +xref: UMLS:C1288332 {source="ncithesaurus:Superior_Semicircular_Canal"} +xref: ZFA:0000314 +is_a: UBERON:0001840 ! semicircular canal +disjoint_from: UBERON:0001842 {source="lexical"} ! posterior semicircular canal + +[Term] +id: UBERON:0001842 +name: posterior semicircular canal +def: "The posterior semicircular canal is a part of the vestibular system and detects rotations of the head in the sagittal plane." [http://en.wikipedia.org/wiki/Posterior_semicircular_canal] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "canalis semicircularis posterior" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_semicircular_canal] +synonym: "caudal vertical semicircular canal" RELATED [] +synonym: "pars superior of labyrinth" RELATED [AAO:0000420] +synonym: "posterior semicircular canals" RELATED [] +synonym: "posterior semicircular duct" RELATED [] +xref: AAO:0000420 +xref: EHDAA2:0001489 +xref: EHDAA:7796 +xref: EMAPA:17296 +xref: FMA:60190 +xref: http://en.wikipedia.org/wiki/Posterior_semicircular_canal +xref: http://linkedlifedata.com/resource/umls/id/C0229454 +xref: http://www.snomedbrowser.com/Codes/Details/279762003 +xref: MA:0001209 +xref: NCIT:C33378 +xref: TAO:0000262 +xref: UMLS:C0229454 {source="ncithesaurus:Posterior_Semicircular_Canal"} +xref: ZFA:0000262 +is_a: UBERON:0001840 ! semicircular canal + +[Term] +id: UBERON:0001843 +name: lateral semicircular canal +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "horizontal semicircular canal" RELATED [] +synonym: "lateral semicircular canals" RELATED [] +synonym: "lateral semicircular duct" RELATED [] +xref: EHDAA2:0000920 +xref: EHDAA:7790 +xref: EMAPA:17821 +xref: FMA:60193 +xref: http://en.wikipedia.org/wiki/Lateral_semicircular_canal +xref: http://www.snomedbrowser.com/Codes/Details/279761005 +xref: MA:0001208 +xref: TAO:0000220 +xref: ZFA:0000220 +is_a: UBERON:0001840 ! semicircular canal + +[Term] +id: UBERON:0001844 +name: cochlea +def: "the spiral-shaped bony canal in the inner ear containing the hair cells that transduce sound. Its core component is the Organ of Corti, the sensory organ of hearing, which is distributed along the partition separating fluid chambers in the coiled tapered tube of the cochlea. [WP,modified]." [http://en.wikipedia.org/wiki/Cochlea, ISBN:0-683-40008-8, MP:0000031] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "cochleae" RELATED PLURAL [] +synonym: "cochlear duct" RELATED [] +synonym: "cochlear organ" RELATED [BTO:0000267] +synonym: "cochlear part of bony labyrinth" EXACT [] +synonym: "lagena" EXACT SENSU [XAO:0000197] +synonym: "lagenas" RELATED PLURAL [ZFA:0000374] +xref: AAO:0000253 +xref: BIRNLEX:1190 +xref: BTO:0000267 +xref: CALOHA:TS-0151 +xref: EFO:0000357 +xref: EMAPA:17597 +xref: EV:0100363 +xref: FMA:60201 +xref: GAID:724 +xref: http://en.wikipedia.org/wiki/Cochlea +xref: http://linkedlifedata.com/resource/umls/id/C0009195 +xref: http://linkedlifedata.com/resource/umls/id/C1278895 +xref: http://www.snomedbrowser.com/Codes/Details/181187008 +xref: MA:0000240 +xref: MAT:0000144 +xref: MESH:D003051 +xref: MIAA:0000144 +xref: NCIT:C12395 +xref: NIFSTD_RETIRED:birnlex_883 +xref: OpenCyc:Mx4rvqfJmJwpEbGdrcN5Y29ycA +xref: TAO:0000374 +xref: UMLS:C0009195 {source="BIRNLEX:1190"} +xref: UMLS:C0009195 {source="ncithesaurus:Cochlea"} +xref: UMLS:C1278895 {source="BIRNLEX:1190"} +xref: VHOG:0000691 +xref: XAO:0000197 +xref: ZFA:0000374 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0034921 ! multi organ part structure +relationship: contributes_to_morphology_of UBERON:0001846 ! internal ear +relationship: part_of UBERON:0001839 {source="FMA", source="VHOG", source="XAO", source="ncit"} ! bony labyrinth + +[Term] +id: UBERON:0001845 +name: perilymph +def: "Transudate contained in the osseous labyrinth outside the membranous labyrinth.[FMA]" [FMA:FMA, http://en.wikipedia.org/wiki/Perilymph] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "liquor cotunnii" RELATED LATIN [http://en.wikipedia.org/wiki/Perilymph] +synonym: "perilympha" RELATED [http://en.wikipedia.org/wiki/Perilymph] +xref: EMAPA:36549 +xref: FMA:60908 +xref: GAID:1185 +xref: http://en.wikipedia.org/wiki/Perilymph +xref: http://linkedlifedata.com/resource/umls/id/C0031059 +xref: MA:0002529 +xref: MESH:A12.207.571.678 +xref: NCIT:C33297 +xref: TAO:0005413 +xref: UMLS:C0031059 {source="ncithesaurus:Perilymph"} +xref: ZFA:0005413 +is_a: UBERON:0006586 ! otolymph +relationship: located_in UBERON:0002278 ! perilymphatic space +relationship: surrounds UBERON:0001849 {source="Wikipedia"} ! membranous labyrinth + +[Term] +id: UBERON:0001846 +name: internal ear +def: "Complex labyrinthine structure that comprises sensory endorgans specialized for vestibular, auditory, and acoustico-vestibular sensation." [http://en.wikipedia.org/wiki/Internal_ear, http://www.ncbi.nlm.nih.gov/pubmed/16217737, ZFIN:curator] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "auris interna" RELATED [BTO:0000630] +synonym: "inner ear" EXACT [] +synonym: "labyrinth" RELATED [] +synonym: "otocyst" RELATED [] +xref: AAO:0000238 +xref: BIRNLEX:1196 +xref: BTO:0000630 +xref: CALOHA:TS-0478 +xref: EFO:0001363 +xref: EHDAA2:0000831 +xref: EHDAA:504 +xref: EMAPA:16194 +xref: EV:0100361 +xref: FMA:60909 +xref: GAID:871 +xref: galen:InnerEar +xref: http://linkedlifedata.com/resource/umls/id/C0022889 +xref: http://linkedlifedata.com/resource/umls/id/C1268973 +xref: http://www.snomedbrowser.com/Codes/Details/181189006 +xref: http://www.snomedbrowser.com/Codes/Details/304982002 +xref: Internal:ear +xref: MA:0000237 +xref: MAT:0000145 +xref: MESH:D007758 +xref: MIAA:0000145 +xref: NCIT:C12499 +xref: OpenCyc:Mx4rwJ8SsJwpEbGdrcN5Y29ycA +xref: TAO:0000217 +xref: UMLS:C0022889 {source="ncithesaurus:Internal_Ear"} +xref: UMLS:C0022889 {source="BIRNLEX:1196"} +xref: UMLS:C1268973 {source="BIRNLEX:1196"} +xref: VHOG:0000284 +xref: XAO:0000192 +xref: ZFA:0000217 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0034921 ! multi organ part structure +relationship: develops_from UBERON:0003051 {evidence="definitional"} ! ear vesicle +relationship: part_of UBERON:0001690 ! ear + +[Term] +id: UBERON:0001847 +name: lobule of pinna +def: "The soft lower part of the external ear, projecting below the antitragus." [http://en.wikipedia.org/wiki/Ear_lobe] +subset: pheno_slim +subset: uberon_slim +synonym: "auricular lobule" EXACT [] +synonym: "ear lobe" EXACT [] +synonym: "ear lobule" RELATED [] +synonym: "earlobe" EXACT [] +synonym: "lobe of ear" EXACT [] +synonym: "lobule of auricle" RELATED [] +synonym: "lobule of auricle of ear" EXACT [] +synonym: "lobulus auriculae" EXACT LATIN [FMA:60984, FMA:TA] +synonym: "pinna lobule" EXACT [] +xref: Ear:lobe +xref: FMA:60984 +xref: http://linkedlifedata.com/resource/umls/id/C0229315 +xref: http://www.snomedbrowser.com/Codes/Details/362544006 +xref: MA:0002468 +xref: NCIT:C32999 +xref: UMLS:C0229315 {source="ncithesaurus:Lobule_of_the_Auricle"} +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0034929 ! external soft tissue zone +relationship: contributes_to_morphology_of UBERON:0001691 ! external ear +relationship: has_part UBERON:0001013 ! adipose tissue +relationship: has_part UBERON:0006815 ! areolar connective tissue +relationship: part_of UBERON:0001757 ! pinna + +[Term] +id: UBERON:0001848 +name: auricular cartilage +def: "cartilage of the pinna and much of the external ear canal." [http://medical-dictionary.thefreedictionary.com/auricular+cartilage] +subset: pheno_slim +synonym: "cartilage of pinna" EXACT [FMA:61013] +synonym: "pinna cartilage" EXACT [] +xref: EMAPA:35158 +xref: FMA:61013 +xref: http://www.snomedbrowser.com/Codes/Details/279627003 +xref: MA:0001227 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0034944 ! zone of organ +intersection_of: UBERON:0034944 ! zone of organ +intersection_of: part_of UBERON:0001757 ! pinna +intersection_of: part_of UBERON:0001867 ! cartilage of external ear +relationship: part_of UBERON:0001757 ! pinna +relationship: part_of UBERON:0001867 ! cartilage of external ear + +[Term] +id: UBERON:0001849 +name: membranous labyrinth +alt_id: UBERON:0010113 +def: "Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. The membranous labyrinth is lodged within the bony labyrinth and has the same general form; it is, however, considerably smaller and is partly separated from the bony walls by a quantity of fluid, the perilymph.[FMA, WP]" [FMA:61022, http://en.wikipedia.org/wiki/Membranous_labyrinth] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "labyrinthus membranaceus" EXACT LATIN [http://en.wikipedia.org/wiki/Membranous_labyrinth] +xref: AAO:0011060 +xref: EHDAA2:0000899 +xref: EHDAA:4698 +xref: EMAPA:17815 +xref: EV:0100367 +xref: FMA:61022 +xref: http://linkedlifedata.com/resource/umls/id/C0458700 +xref: http://www.snomedbrowser.com/Codes/Details/263790009 +xref: MA:0000242 +xref: Membranous:labyrinth +xref: NCIT:C33090 +xref: UMLS:C0458700 {source="ncithesaurus:Membranous_Labyrinth"} +xref: VHOG:0000729 +xref: XAO:0000194 +is_a: UBERON:0000062 ! organ +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0003051 ! ear vesicle +relationship: located_in UBERON:0004637 ! otic capsule +relationship: part_of UBERON:0001846 {source="FMA", source="MA"} ! internal ear + +[Term] +id: UBERON:0001850 +name: lacrimal drainage system +def: "A collection of channels that connects the conjunctival sac with the nasal cavity, encompassing the lacrimal ducts, the lacrimal sac and the naso-lacrimal duct." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "lacrimal duct" RELATED [FMA:61063, MA:0001295] +synonym: "tear duct" RELATED [MA:0001295] +xref: EMAPA:19245 +xref: FMA:61063 +xref: http://www.snomedbrowser.com/Codes/Details/280426002 +xref: MA:0001295 +is_a: UBERON:0000062 {source="FMA"} ! organ +is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: channel_for UBERON:0001827 ! secretion of lacrimal gland +relationship: connects UBERON:0001707 ! nasal cavity +relationship: connects UBERON:0010284 ! lacrimal punctum +relationship: part_of UBERON:0001750 {source="FMA"} ! lacrimal apparatus + +[Term] +id: UBERON:0001851 +name: cortex +def: "Outermost layer of an organ[WP]." [http://en.wikipedia.org/wiki/Cortex_(anatomy)] +subset: pheno_slim +subset: uberon_slim +subset: upper_level +synonym: "cortex" EXACT [FMA:61109] +synonym: "cortex of organ" EXACT [] +xref: Cortex:(anatomy) +xref: EFO:0000383 +xref: EHDAA:9344 +xref: FMA:61109 +xref: galen:Cortex +is_a: UBERON:0000064 ! organ part +relationship: bounding_layer_of UBERON:0000062 ! organ + +[Term] +id: UBERON:0001852 +name: endolymph +def: "Transudate contained within the membranous labyrinth.[FMA]" [FMA:61112, http://en.wikipedia.org/wiki/Endolymph] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "endolympha" RELATED [http://en.wikipedia.org/wiki/Endolymph] +synonym: "endolympha" RELATED LATIN [http://en.wikipedia.org/wiki/Endolymph] +synonym: "endolymphatic fluid" EXACT [] +synonym: "Scarpa's fluid" RELATED [http://en.wikipedia.org/wiki/Endolymph] +xref: EMAPA:36548 +xref: FMA:61112 +xref: GAID:1184 +xref: http://en.wikipedia.org/wiki/Endolymph +xref: http://linkedlifedata.com/resource/umls/id/C0014166 +xref: MA:0002528 +xref: MESH:A12.207.571.324 +xref: NCIT:C32513 +xref: TAO:0005414 +xref: UMLS:C0014166 {source="ncithesaurus:Endolymph"} +xref: ZFA:0005414 +is_a: UBERON:0006586 ! otolymph +intersection_of: UBERON:0007779 ! transudate +intersection_of: located_in UBERON:0011078 ! endolymphatic space +relationship: located_in UBERON:0011078 ! endolymphatic space + +[Term] +id: UBERON:0001853 +name: utricle of membranous labyrinth +def: "the larger of the two otolith organs in the vestibule" [http://en.wikipedia.org/wiki/Utricle_(ear), http://www.ncbi.nlm.nih.gov/pubmed/15363417, ISBN:0-8036-0655-9, MGI:smb, MP:0006090] +comment: XAO/AAO to be checked - see https://github.com/seger/aao/issues/5; AAO has both utricle and utriculus; these are generally considered synonyms - e.g. http://www.fishbase.org/glossary/Glossary.php?q=utriculus +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "membranous labyrinth utricle" EXACT [] +synonym: "utricle" EXACT [] +synonym: "utriculus" EXACT [ZFA:0000700] +synonym: "utriculus (labyrinthus vestibularis)" EXACT [] +xref: AAO:0000625 +xref: AAO:0011109 +xref: BTO:0001807 +xref: EHDAA2:0002153 +xref: EHDAA:4726 +xref: EMAPA:17293 +xref: EV:0100368 +xref: FMA:61113 +xref: http://linkedlifedata.com/resource/umls/id/C0042158 +xref: http://www.snomedbrowser.com/Codes/Details/279817006 +xref: MA:0000247 +xref: NCIT:C33844 +xref: TAO:0000700 +xref: UMLS:C0042158 {source="ncithesaurus:Utricle"} +xref: Utricle:(ear) +xref: VHOG:0000289 +xref: XAO:0000195 +xref: ZFA:0000700 +is_a: UBERON:0002518 {source="Wikipedia", source="ZFA"} ! otolith organ + +[Term] +id: UBERON:0001854 +name: saccule of membranous labyrinth +def: "the smaller of the two otolith organs in the vestibule" [http://en.wikipedia.org/wiki/Saccule, http://www.ncbi.nlm.nih.gov/pubmed/15363417, ISBN:0-8036-0655-9, MGI:smb, MP:0006089] +comment: XAO/AAO to be checked - see https://github.com/seger/aao/issues/5 +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "membranous labyrinth saccule" EXACT [] +synonym: "saccule" EXACT [] +synonym: "sacculus" EXACT [ZFA:0000428] +synonym: "sacculus" RELATED LATIN [http://en.wikipedia.org/wiki/Saccule] +synonym: "sacculus (labyrinthus vestibularis)" EXACT [] +xref: AAO:0000550 +xref: BTO:0001805 +xref: EHDAA2:0001769 +xref: EHDAA:4712 +xref: EMAPA:17290 +xref: EV:0100369 +xref: FMA:61116 +xref: http://en.wikipedia.org/wiki/Saccule +xref: http://linkedlifedata.com/resource/umls/id/C0036029 +xref: http://www.snomedbrowser.com/Codes/Details/279827000 +xref: MA:0000246 +xref: NCIT:C33503 +xref: TAO:0000428 +xref: UMLS:C0036029 {source="ncithesaurus:Saccule"} +xref: VHOG:0000374 +xref: XAO:0000196 +xref: ZFA:0000428 +is_a: UBERON:0002518 {source="Wikipedia", source="ZFA"} ! otolith organ + +[Term] +id: UBERON:0001855 +name: cochlear duct of membranous labyrinth +def: "An endolymph filled cavity inside the cochlea, located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Houses the organ of Corti[WP]." [http://en.wikipedia.org/wiki/Cochlear_duct] +subset: pheno_slim +subset: uberon_slim +synonym: "cochlea duct" EXACT [BIRNLEX:2562] +synonym: "cochlear aqueduct" RELATED [] +synonym: "cochlear duct" EXACT [] +synonym: "ductus cochlearis" RELATED LATIN [http://en.wikipedia.org/wiki/Cochlear_duct] +synonym: "ductus cochlearis" RELATED LATIN [BTO:0001692] +synonym: "membranous cochlea" RELATED [BTO:0001692] +synonym: "Reissner's canal" EXACT [FMA:61119] +synonym: "Reissners canal" EXACT [BIRNLEX:2562] +synonym: "scala media" RELATED [http://en.wikipedia.org/wiki/Cochlear_duct] +synonym: "scala medias" EXACT [BIRNLEX:2562] +synonym: "scala of Loewenberg" RELATED [BTO:0001692] +xref: BIRNLEX:2562 +xref: BTO:0001692 +xref: CALOHA:TS-0152 +xref: Cochlear:duct +xref: EHDAA2:0000262 +xref: EHDAA:4718 +xref: EMAPA:17598 +xref: FMA:61119 +xref: GAID:874 +xref: http://linkedlifedata.com/resource/umls/id/C1281166 +xref: http://linkedlifedata.com/resource/umls/id/C1323110 +xref: http://www.snomedbrowser.com/Codes/Details/279849006 +xref: MA:0000243 +xref: MESH:D003053 +xref: NCIT:C32335 +xref: UMLS:C1281166 {source="BIRNLEX:2562"} +xref: UMLS:C1323110 {source="ncithesaurus:Cochlear_Duct"} +xref: UMLS:C1323110 {source="BIRNLEX:2562"} +xref: VHOG:0000507 +is_a: UBERON:0000025 ! tube +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002499 {source="FMA", source="MA"} ! cochlear labyrinth + +[Term] +id: UBERON:0001856 +name: semicircular duct +def: "Any of the three loop-shaped membranous inner tubular parts of the semicircular canals that are about one-fourth the diameter of the corresponding outer bony canals, that communicate at each end with the utricle, and that have near one end an expanded ampulla containing an area of sensory epithelium" [http://dictionary.reference.com/browse/semicircular+duct] +synonym: "ductus semicirculares" RELATED PLURAL [FMA:71880, FMA:TA] +synonym: "membranous semicircular canal" RELATED [MA:0000251] +xref: EMAPA:32830 +xref: FMA:61122 +xref: http://linkedlifedata.com/resource/umls/id/C1323109 +xref: http://www.snomedbrowser.com/Codes/Details/279833009 +xref: MA:0000251 +xref: NCIT:C33528 +xref: UMLS:C1323109 {source="ncithesaurus:Semicircular_Duct"} +xref: VHOG:0000238 +is_a: UBERON:0000025 ! tube +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001840 {source="MA"} ! semicircular canal +relationship: part_of UBERON:0001862 {source="FMA", source="MA"} ! vestibular labyrinth + +[Term] +id: UBERON:0001857 +name: anterior semicircular duct +synonym: "superior semicircular duct" RELATED [VHOG:0000246] +xref: EMAPA:37411 {source="MA:th"} +xref: FMA:61123 +xref: http://www.snomedbrowser.com/Codes/Details/279836001 +xref: MA:0001211 +xref: VHOG:0000246 +is_a: UBERON:0001856 ! semicircular duct +intersection_of: UBERON:0001856 ! semicircular duct +intersection_of: part_of UBERON:0001841 ! anterior semicircular canal +disjoint_from: UBERON:0001858 {source="lexical"} ! posterior semicircular duct +relationship: part_of UBERON:0001841 ! anterior semicircular canal + +[Term] +id: UBERON:0001858 +name: posterior semicircular duct +def: "The semicircular canals are three half-circular, interconnected tubes located inside each ear. The three canals are the horizontal semicircular canal (also known as the lateral semicircular canal), superior semicircular canal (also known as the anterior semicircular canal), and the posterior semicircular canal. The canals are aligned approximately orthogonally to one another. The horizontal canal is aligned roughly horizontally in the head. The superior and anterior canals are aligned roughly at a 45 degree angle to a vertical plane drawn from the nose to the back of the skull. Thus, the horizontal canal detects horizontal head movements (such as when doing a pirouette), while the superior and posterior canals detect vertical head movements. Each canal is filled with a fluid called endolymph and contains a motion sensor with little hairs whose ends are embedded in a gelatinous structure called the cupula. As the skull twists in any direction, the endolymph is thrown into different sections of the canals. The cilia detect when the endolymph rushes past, and a signal is then sent to the brain. The semicircular canals are a component of the Labyrinth. Among species of mammals, the size of the semicircular canals is correlated with their type of locomotion. Specifically, species that are agile and have fast, jerky locomotion have larger canals relative to their body size than those that move more cautiously." [http://en.wikipedia.org/wiki/Semicircular_canal] +subset: uberon_slim +xref: EMAPA:37413 {source="MA:th"} +xref: FMA:61126 +xref: http://www.snomedbrowser.com/Codes/Details/279835002 +xref: MA:0001214 +xref: Semicircular:canal +xref: VHOG:0000248 +is_a: UBERON:0001856 ! semicircular duct +intersection_of: UBERON:0001856 ! semicircular duct +intersection_of: part_of UBERON:0001842 ! posterior semicircular canal +relationship: part_of UBERON:0001842 ! posterior semicircular canal + +[Term] +id: UBERON:0001859 +name: lateral semicircular duct +subset: uberon_slim +synonym: "external semicircular duct" RELATED [] +xref: EMAPA:37412 {source="MA:th"} +xref: FMA:61129 +xref: http://en.wikipedia.org/wiki/Lateral_semicircular_duct +xref: http://www.snomedbrowser.com/Codes/Details/279834003 +xref: MA:0001213 +xref: VHOG:0000247 +is_a: UBERON:0001856 ! semicircular duct +intersection_of: UBERON:0001856 ! semicircular duct +intersection_of: part_of UBERON:0001843 ! lateral semicircular canal +relationship: part_of UBERON:0001843 ! lateral semicircular canal + +[Term] +id: UBERON:0001860 +name: endolymphatic duct +def: "the small membranous canal, connecting with both saccule and utricle of the membranous labyrinth, passing through the aqueduct of vestibule, and terminating in the endolymphatic sac" [MGI:anna, MGI:smb, MP:0006011] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "ductus endolymphaticus" EXACT LATIN [AAO:0000135] +synonym: "ductus endolymphaticus" RELATED LATIN [http://en.wikipedia.org/wiki/Endolymphatic_duct] +xref: AAO:0000135 +xref: EMAPA:18580 +xref: Endolymphatic:duct +xref: FMA:61246 +xref: GAID:886 +xref: http://www.snomedbrowser.com/Codes/Details/362567008 +xref: MA:0001187 +xref: MESH:D004711 +xref: TAO:0002194 +xref: ZFA:0001705 +is_a: UBERON:0000025 ! tube +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001849 ! membranous labyrinth + +[Term] +id: UBERON:0001861 +name: ductus reuniens +def: "The canalis reuniens of Hansen is part of the human inner ear. It connects the lower part of the saccule to the ductus cochlearis near its vestibular extremity." [http://en.wikipedia.org/wiki/Canalis_reuniens_of_Hensen] +synonym: "canal of Henson" RELATED [http://en.wikipedia.org/wiki/Canalis_reuniens_of_Hensen] +synonym: "canalis reuniens" RELATED [http://en.wikipedia.org/wiki/Canalis_reuniens_of_Hensen] +synonym: "canalis reuniens of Hensen" RELATED [http://en.wikipedia.org/wiki/Canalis_reuniens_of_Hensen] +synonym: "Hensen duct" RELATED [http://en.wikipedia.org/wiki/Canalis_reuniens_of_Hensen] +synonym: "Hensen's duct" RELATED [http://en.wikipedia.org/wiki/Canalis_reuniens_of_Hensen] +xref: EMAPA:17287 +xref: FMA:61252 +xref: http://en.wikipedia.org/wiki/Canalis_reuniens_of_Hensen +xref: http://www.snomedbrowser.com/Codes/Details/279805009 +xref: MA:0000244 +is_a: UBERON:0000025 ! tube +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: connects UBERON:0001854 {source="Wikipedia"} ! saccule of membranous labyrinth +relationship: connects UBERON:0001855 {source="Wikipedia"} ! cochlear duct of membranous labyrinth +relationship: part_of UBERON:0001862 {source="EMAPA"} ! vestibular labyrinth + +[Term] +id: UBERON:0001862 +name: vestibular labyrinth +def: "The part of the membranous labyrinth that includes the utricle and saccule lodged within the vestibule and the semicircular ducts lodged eccentrically in the corresponding canals." [BTO:0001856] +subset: pheno_slim +synonym: "inner ear vestibular component" EXACT [EHDAA2:0000832] +synonym: "labyrinthus vestibularis" RELATED [BTO:0001856] +synonym: "vestibular apparatus" RELATED [] +synonym: "vestibular component" BROAD [] +xref: BTO:0001856 +xref: CALOHA:TS-0479 +xref: EHDAA2:0000832 +xref: EHDAA:4706 +xref: EMAPA:17286 +xref: EMAPA:17815 +xref: FMA:61255 +xref: http://linkedlifedata.com/resource/umls/id/C0042606 +xref: http://www.snomedbrowser.com/Codes/Details/181188003 +xref: Inner:ear +xref: MA:0000245 +xref: NCIT:C33871 +xref: UMLS:C0042606 {source="ncithesaurus:Vestibular_Labyrinth"} +xref: XAO:0004145 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001849 ! membranous labyrinth + +[Term] +id: UBERON:0001863 +name: scala vestibuli +def: "the division of the spiral canal of the cochlea lying on the apical side of the spiral lamina and vestibular membrane" [MGI:anna, MP:0003168] +subset: pheno_slim +subset: uberon_slim +xref: EMAPA:35753 +xref: FMA:61269 +xref: http://www.snomedbrowser.com/Codes/Details/362578000 +xref: MA:0001206 +xref: Scala:vestibuli +is_a: UBERON:0011060 {source="MA"} ! perilymphatic channel +is_a: UBERON:0013685 ! foramen of skull +relationship: contributes_to_morphology_of UBERON:0001844 ! cochlea +relationship: located_in UBERON:0002278 ! perilymphatic space +relationship: part_of UBERON:0001844 {source="FMA"} ! cochlea + +[Term] +id: UBERON:0001864 +name: scala tympani +def: "the division of the spiral canal of the cochlea lying on the basal side of the spiral lamina" [MGI:anna, MP:0003167] +subset: pheno_slim +subset: uberon_slim +xref: EMAPA:35752 +xref: FMA:61272 +xref: GAID:879 +xref: http://www.snomedbrowser.com/Codes/Details/362579008 +xref: MA:0001205 +xref: MESH:D012533 +xref: Scala:tympani +is_a: UBERON:0011060 {source="MA"} ! perilymphatic channel +is_a: UBERON:0013685 ! foramen of skull +relationship: contributes_to_morphology_of UBERON:0001844 ! cochlea +relationship: located_in UBERON:0002278 ! perilymphatic space +relationship: part_of UBERON:0001844 {source="FMA"} ! cochlea + +[Term] +id: UBERON:0001865 +name: cartilaginous external acoustic tube +synonym: "cartilaginous external acoustic meatus" EXACT [] +synonym: "cartilaginous part of external acoustic meatus" EXACT [] +synonym: "external acoustic meatus cartilaginous part" EXACT [] +synonym: "meatus acusticus externus cartilagineus" EXACT LATIN [FMA:61289, FMA:TA] +xref: EMAPA:37525 {source="MA:th"} +xref: FMA:61289 +xref: MA:0001234 +is_a: UBERON:0000025 ! tube +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: part_of UBERON:0001352 ! external acoustic meatus + +[Term] +id: UBERON:0001866 +name: sebum +def: "Fatty lubricant matter secreted by sebaceous glands, and made of made of triglyceride oils, wax, squalene, and metabolytes of fat-producing cells[BTO,WP]." [BTO:0001981, http://en.wikipedia.org/wiki/Sebaceous_glands#Sebum] +subset: uberon_slim +xref: BTO:0001981 +xref: ENVO:02000037 +xref: FMA:61304 +xref: GAID:1168 +xref: http://linkedlifedata.com/resource/umls/id/C0036511 +xref: MA:0002538 +xref: MESH:D012629 +xref: NCIT:C13276 +xref: Sebum +xref: UMLS:C0036511 {source="ncithesaurus:Sebum"} +is_a: UBERON:0000456 ! secretion of exocrine gland +intersection_of: UBERON:0000456 ! secretion of exocrine gland +intersection_of: produced_by UBERON:0001821 ! sebaceous gland +relationship: produced_by UBERON:0001821 ! sebaceous gland + +[Term] +id: UBERON:0001867 +name: cartilage of external ear +def: "A cartilage that is part of a external ear [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "external ear cartilage" EXACT [] +xref: EMAPA:37706 {source="MA:th"} +xref: FMA:61339 +xref: GAID:103 +xref: http://linkedlifedata.com/resource/umls/id/C0013445 +xref: MA:0001886 +xref: MESH:A02.165.207 +xref: NCIT:C49225 +xref: UMLS:C0013445 {source="ncithesaurus:External_Ear_Cartilage"} +is_a: UBERON:0007844 ! cartilage element +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0001691 ! external ear +relationship: composed_primarily_of UBERON:0001996 ! elastic cartilage tissue +relationship: part_of UBERON:0001691 ! external ear + +[Term] +id: UBERON:0001868 +name: skin of chest +def: "A zone of skin that is part of a chest [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "anterior thoracic region zone of skin" EXACT [OBOL:automatic] +synonym: "anterolateral part of thorax zone of skin" EXACT [OBOL:automatic] +synonym: "chest skin" EXACT [] +synonym: "chest zone of skin" EXACT [OBOL:automatic] +synonym: "front of thorax zone of skin" EXACT [OBOL:automatic] +synonym: "zone of skin of anterior chest" EXACT [FMA:61416] +synonym: "zone of skin of anterior part of thorax" EXACT [FMA:61416] +synonym: "zone of skin of anterior thoracic region" EXACT [OBOL:automatic] +synonym: "zone of skin of anterolateral part of thorax" EXACT [OBOL:automatic] +synonym: "zone of skin of chest" EXACT [OBOL:automatic] +synonym: "zone of skin of front of thorax" EXACT [OBOL:automatic] +synonym: "zone of skin of pectoral part of chest" RELATED [FMA:61417] +xref: EMAPA:37279 {source="MA:th"} +xref: FMA:61416 +xref: http://www.snomedbrowser.com/Codes/Details/181496004 +xref: MA:0000553 +is_a: UBERON:0001418 ! skin of thorax +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0001443 ! chest +relationship: part_of UBERON:0001443 ! chest + +[Term] +id: UBERON:0001869 +name: cerebral hemisphere +def: "One of two bilateral, largely symmetrical organ subdivisions within the telencephalon which contain the cerebral cortex and cerebral white matter.[FMA]" [FMA:61817, http://en.wikipedia.org/wiki/Cerebral_hemisphere] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "cerebrum" RELATED [https://github.com/obophenotype/uberon/issues/1208, MA:0000133, VHOG:0001639] +synonym: "hemisphere" RELATED [VHOG:0001639] +synonym: "hemispheric regions" RELATED [BAMS:HEM] +synonym: "hemispherium cerebri" RELATED LATIN [http://en.wikipedia.org/wiki/Cerebral_hemisphere] +synonym: "medial amygdalar nucleus" RELATED [NeuroNames:241] +synonym: "nucleus amygdaloideus medialis" RELATED LATIN [NeuroNames:241] +synonym: "nucleus medialis amygdalae" RELATED LATIN [NeuroNames:241] +xref: AAO:0010480 +xref: BAMS:HEM +xref: BIRNLEX:1042 +xref: BTO:0000231 +xref: CALOHA:TS-2007 +xref: Cerebral:hemisphere +xref: DMBA:15739 +xref: EFO:0002521 +xref: EMAPA:16653 +xref: FMA:61817 +xref: galen:CerebralHemisphere +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=241 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=241 {source="BIRNLEX:1042"} +xref: http://linkedlifedata.com/resource/umls/id/C0228174 +xref: http://linkedlifedata.com/resource/umls/id/C0242202 +xref: http://www.snomedbrowser.com/Codes/Details/278251007 +xref: MA:0000133 +xref: MBA:403 +xref: NCIT:C12351 +xref: OpenCyc:Mx4rvigx5ZwpEbGdrcN5Y29ycA +xref: UMLS:C0228174 {source="ncithesaurus:Cerebral_Hemisphere"} +xref: UMLS:C0242202 {source="BIRNLEX:1042"} +xref: VHOG:0001639 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0000955 ! brain +relationship: in_lateral_side_of UBERON:0001893 {source="FMA-abduced-lr"} ! telencephalon +relationship: part_of UBERON:0001893 ! telencephalon + +[Term] +id: UBERON:0001870 +name: frontal cortex +def: "Anterior portion of the neocortex, lying anterior to the central sulcus in humans. It is bounded by the parietal cortex posteriorly and the temporal cortex laterally[NIFSTD,modified]." [NLXANAT:20090601] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "cortex of frontal lobe" EXACT [FMA:242199] +synonym: "frontal lobe cortex" EXACT [FMA:242199] +synonym: "frontal neocortex" RELATED [DHBA:10161] +synonym: "gray matter of frontal lobe" EXACT [FMA:242199] +synonym: "grey matter of frontal lobe" EXACT [] +xref: BTO:0000484 +xref: DHBA:10161 +xref: DMBA:16002 +xref: EMAPA:35357 +xref: FMA:242199 +xref: Frontal:lobe +xref: GAID:674 +xref: MA:0000905 +xref: NLXANAT:20090601 +is_a: UBERON:0016529 ! cortex of cerebral lobe +intersection_of: UBERON:0016529 ! cortex of cerebral lobe +intersection_of: part_of UBERON:0016525 ! frontal lobe +relationship: part_of UBERON:0016525 ! frontal lobe + +[Term] +id: UBERON:0001871 +name: temporal lobe +def: "Lower lateral part of the cerebral hemisphere. (MSH)" [BIRNLEX:1160] +comment: Boundary notes: It is bounded dorsally by the lateral fissure and posteriorly by an arbitrary border shared with the occipital lobe. [Wikipedia:Temporal_lobe] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "lobus temporalis" EXACT LATIN [http://en.wikipedia.org/wiki/Temporal_lobe] +synonym: "temporal cortex" NARROW [] +xref: BAMS:Temporal_lobe +xref: BAMS:TL +xref: BIRNLEX:1160 +xref: BTO:0001355 +xref: CALOHA:TS-1020 +xref: DHBA:12139 +xref: EFO:0000917 +xref: EMAPA:18797 +xref: EV:0100169 +xref: FMA:61825 +xref: GAID:635 +xref: HBA:4132 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=125 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=125 {source="BIRNLEX:1160"} +xref: http://linkedlifedata.com/resource/umls/id/C0039485 +xref: http://linkedlifedata.com/resource/umls/id/C1268978 +xref: http://www.snomedbrowser.com/Codes/Details/180921000 +xref: MAT:0000508 +xref: MESH:A08.186.211.730.885.213.863 +xref: NCIT:C12353 +xref: OpenCyc:Mx4rwQLi-ZwpEbGdrcN5Y29ycA +xref: Temporal:lobe +xref: UMLS:C0039485 {source="ncithesaurus:Temporal_Lobe"} +xref: UMLS:C0039485 {source="BIRNLEX:1160"} +xref: UMLS:C1268978 {source="BIRNLEX:1160"} +is_a: UBERON:0016526 {source="FMA"} ! lobe of cerebral hemisphere +relationship: contributes_to_morphology_of UBERON:0001893 ! telencephalon + +[Term] +id: UBERON:0001872 +name: parietal lobe +def: "Upper central part of the cerebral hemisphere. (MSH)" [BIRNLEX:1148] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "lobus parietalis" RELATED LATIN [http://en.wikipedia.org/wiki/Parietal_lobe] +synonym: "parietal region" BROAD [] +synonym: "regio parietalis" EXACT LATIN [FMA:61826, FMA:TA] +xref: BAMS:Parietal_lobe +xref: BIRNLEX:1148 +xref: BTO:0001001 +xref: CALOHA:TS-0747 +xref: DHBA:12131 +xref: EFO:0000914 +xref: EV:0100168 +xref: FMA:61826 +xref: GAID:680 +xref: HBA:4084 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=95 {source="BIRNLEX:1148"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=95 +xref: http://linkedlifedata.com/resource/umls/id/C0030560 +xref: http://www.snomedbrowser.com/Codes/Details/180922007 +xref: MAT:0000506 +xref: MESH:A08.186.211.730.885.213.670 +xref: NCIT:C12354 +xref: OpenCyc:Mx4rvg-typwpEbGdrcN5Y29ycA +xref: Parietal:lobe +xref: UMLS:C0030560 {source="BIRNLEX:1148"} +xref: UMLS:C0030560 {source="ncithesaurus:Parietal_Lobe_of_the_Brain"} +is_a: UBERON:0016526 {source="FMA"} ! lobe of cerebral hemisphere +relationship: adjacent_to UBERON:0001871 ! temporal lobe +relationship: contributes_to_morphology_of UBERON:0001893 ! telencephalon + +[Term] +id: UBERON:0001873 +name: caudate nucleus +alt_id: UBERON:0010122 +def: "Subcortical nucleus of telecephalic origin consisting of an elongated gray mass lying lateral to and bordering the lateral ventricle. It is divided into a head, body and tail in some species." [BIRNLEX:1373] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "Ammon horn fields" RELATED [BAMS:CA] +synonym: "caudatum" RELATED [BTO:0000211] +synonym: "caudatus" EXACT [] +synonym: "nucleus caudatus" RELATED [BTO:0000211] +synonym: "nucleus caudatus" RELATED LATIN [http://en.wikipedia.org/wiki/Caudate_nucleus] +xref: BAMS:CA +xref: BAMS:Cd +xref: BIRNLEX:1373 +xref: BM:Tel-CA +xref: BTO:0000211 +xref: CALOHA:TS-0121 +xref: Caudate:nucleus +xref: DHBA:10334 +xref: DMBA:15855 +xref: EFO:0000907 +xref: EHDAA2:0004461 +xref: EMAPA:18207 +xref: EV:0100185 +xref: FMA:61833 +xref: GAID:670 +xref: HBA:4278 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=226 {source="BIRNLEX:1373"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=226 +xref: http://linkedlifedata.com/resource/umls/id/C0007461 +xref: http://www.snomedbrowser.com/Codes/Details/279297002 +xref: MA:0000894 +xref: MAT:0000513 +xref: MESH:A08.186.211.730.885.105.487.550.184 +xref: NCIT:C12451 +xref: OpenCyc:Mx4rvvyAjJwpEbGdrcN5Y29ycA +xref: PBA:10082 +xref: UMLS:C0007461 {source="ncithesaurus:Caudate_Nucleus"} +xref: UMLS:C0007461 {source="BIRNLEX:1373"} +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: contributes_to_morphology_of UBERON:0005383 ! caudate-putamen +relationship: part_of UBERON:0005383 {source="MA"} ! caudate-putamen + +[Term] +id: UBERON:0001874 +name: putamen +def: "Subcortical nucleus of telencephalic , which together with the caudate nucleus, forms the striatum. The putamen lies lateral to the internal capsule and medial to the external medullary lamina, and is separated from the caudate nucleus by the fibers of the internal capsule for most of its length, except at its anterior portion." [BIRNLEX:809] +subset: pheno_slim +subset: uberon_slim +synonym: "nucleus putamen" EXACT [] +xref: BAMS:PU +xref: BAMS:Pu +xref: BIRNLEX:809 +xref: BM:Tel-Pu +xref: CALOHA:TS-2041 +xref: DHBA:10338 +xref: DMBA:15857 +xref: EMAPA:35719 +xref: EV:0100187 +xref: FMA:61834 +xref: GAID:671 +xref: HBA:4287 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=230 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=230 {source="BIRNLEX:809"} +xref: http://en.wikipedia.org/wiki/Putamen +xref: http://linkedlifedata.com/resource/umls/id/C0034169 +xref: http://www.snomedbrowser.com/Codes/Details/281512002 +xref: MA:0000895 +xref: MESH:A08.186.211.730.885.105.487.550.784 +xref: NCIT:C12452 +xref: PBA:10086 +xref: UMLS:C0034169 {source="ncithesaurus:Putamen"} +xref: VHOG:0001456 +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: contributes_to_morphology_of UBERON:0005383 ! caudate-putamen +relationship: part_of UBERON:0001869 {source="FMA"} ! cerebral hemisphere +relationship: part_of UBERON:0005383 ! caudate-putamen + +[Term] +id: UBERON:0001875 +name: globus pallidus +def: "Subcortical nucleus, functionally part of the basal ganglia, which consists of two segments the external (or lateral) and internal (or medial) separated by the medial medullary lamina in primates. In rodents, The globus pallidus lateral is separated from the medial segment by the fibers of the internal capsule/cerebral peduncle." [BIRNLEX:1234] +comment: BTO and MA are inconsistent w.r.t striatum and pallidum being non-overlapping as in ABA. Note that we have pallidum as part_of basal gangion, so we can make the direct link to basal ganglion. ISBN:1588900649 says: ... a derivative of the diencephalon, seperates as a result of growing fibers of theinternal capsule and is finally displaced into telencephalon. only a small medial remnannt remains, the entopeduncular nucleus. The globus pallidus should be regarded as part of the subthalamus +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "globus pallidus (Burdach)" RELATED [NeuroNames:231] +synonym: "nucleus pallidus" RELATED LATIN [NeuroNames:231] +synonym: "pale body" EXACT [BIRNLEX:1234] +synonym: "paleostriatum" EXACT [http://en.wikipedia.org/wiki/Globus_pallidus] +synonym: "pallidium" RELATED [http://en.wikipedia.org/wiki/Globus_pallidus] +synonym: "pallidum" RELATED [BIRNLEX:1234, GO:0021759, http://en.wikipedia.org/wiki/Globus_pallidus] +xref: BAMS:GP +xref: BIRNLEX:1234 +xref: BTO:0002246 +xref: CALOHA:TS-2013 +xref: DHBA:10342 +xref: EFO:0000905 +xref: EMAPA:35380 +xref: EV:0100188 +xref: FMA:61835 +xref: GAID:668 +xref: Globus:pallidus +xref: HBA:4293 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=231 {source="BIRNLEX:1234"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=231 +xref: http://linkedlifedata.com/resource/umls/id/C0017651 +xref: http://www.snomedbrowser.com/Codes/Details/362361005 +xref: MA:0000890 +xref: MAT:0000510 +xref: MESH:A08.186.211.730.885.105.487.397 +xref: NCIT:C12449 +xref: PBA:10097 +xref: UMLS:C0017651 {source="ncithesaurus:Globus_Pallidus"} +xref: UMLS:C0017651 {source="BIRNLEX:1234"} +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: contributes_to_morphology_of UBERON:0010011 ! collection of basal ganglia +relationship: develops_from UBERON:0001894 ! diencephalon +relationship: develops_from_part_of UBERON:0001894 {source="GO", source="ISBN:1588900649"} ! diencephalon +relationship: part_of UBERON:0001869 ! cerebral hemisphere +relationship: part_of UBERON:0006514 {source="MA"} ! pallidum + +[Term] +id: UBERON:0001876 +name: amygdala +def: "Subcortical brain region lying anterior to the hippocampal formation in the temporal lobe and anterior to the temporal horn of the lateral ventricle in some species. It is usually subdivided into several groups. Functionally, it is not considered a unitary structure (MM)." [BIRNLEX:1241] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "amygdaloid area" RELATED [] +synonym: "amygdaloid body" EXACT [] +synonym: "amygdaloid complex" EXACT [BIRNLEX:1241] +synonym: "amygdaloid nuclear complex" EXACT [] +synonym: "amygdaloid nuclear group" RELATED [BTO:0001042] +synonym: "amygdaloid nuclear groups" EXACT [] +synonym: "amygdaloid nucleus" RELATED [FMA:61841] +synonym: "archistriatum" EXACT [] +synonym: "corpus amygdalae" RELATED LATIN [NeuroNames:237] +synonym: "corpus amygdaloideum" RELATED [BTO:0001042] +synonym: "corpus amygdaloideum" RELATED LATIN [http://en.wikipedia.org/wiki/Amygdala] +synonym: "nucleus amygdalae" RELATED [BTO:0001042] +xref: BAMS:Amg +xref: BAMS:AMY +xref: BAMS:Amy +xref: BAMS:Amygdala +xref: BAMS:Amygdaloid_complex +xref: BIRNLEX:1241 +xref: BM:Tel-Am +xref: BTO:0001042 +xref: CALOHA:TS-0037 +xref: DHBA:10361 +xref: EFO:0000252 +xref: EMAPA:32672 +xref: EMAPA:36051 +xref: EV:0100189 +xref: EV:0100190 +xref: FMA:61841 +xref: GAID:616 +xref: HBA:4327 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=237 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=237 {source="BIRNLEX:1241"} +xref: http://en.wikipedia.org/wiki/Amygdala +xref: http://linkedlifedata.com/resource/umls/id/C0002708 +xref: http://www.snomedbrowser.com/Codes/Details/279404004 +xref: MA:0000887 +xref: MAT:0000289 +xref: MESH:A08.186.211.577.090 +xref: MIAA:0000289 +xref: NCIT:C12440 +xref: OpenCyc:Mx4rwJC_2ZwpEbGdrcN5Y29ycA +xref: PBA:4002 +xref: UMLS:C0002708 {source="ncithesaurus:Amygdala"} +xref: UMLS:C0002708 {source="BIRNLEX:1241"} +xref: VHOG:0001277 +is_a: UBERON:0002420 {source="FMA"} ! basal ganglion +is_a: UBERON:0005401 ! cerebral hemisphere gray matter +relationship: part_of UBERON:0000349 {source="FMA"} ! limbic system +relationship: part_of UBERON:0001871 {source="BTO"} ! temporal lobe + +[Term] +id: UBERON:0001877 +name: medial septal nucleus +def: "Cells lying generally in front of Regional_part_of_septal_nuclei, lying ventral to and slightly medial to the lateral septal nucleus. Neurons in this nucleus give rise to the bulk of efferents from the septal nuclei. A major projection from the medial septal nucleus terminates in the hippocampal formation (Adapted from Brodal, 1981)." [BIRNLEX:1668, https://github.com/obophenotype/uberon/issues/1356] +synonym: "medial parolfactory nucleus" EXACT [FMA:61879] +synonym: "medial septal nucleus (Cajal)" RELATED [NeuroNames:262] +synonym: "medial septum" NARROW [BIRNLEX:1668] +synonym: "medial septum nucleus" RELATED [NeuroNames:262] +synonym: "n. septi medialis" RELATED LATIN [NeuroNames:262] +synonym: "nucleus medialis septi" RELATED LATIN [NeuroNames:262] +synonym: "nucleus septalis medialis" RELATED [BTO:0002446] +xref: BAMS:MS +xref: BAMS:SMN +xref: BIRNLEX:1668 +xref: BM:Tel-Spt-SMN +xref: BTO:0002446 +xref: DHBA:10351 +xref: DMBA:15764 +xref: EMAPA:35553 +xref: FMA:61879 +xref: HBA:4302 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=262 {source="BIRNLEX:1668"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=262 +xref: http://en.wikipedia.org/wiki/Medial_septal_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0175233 +xref: MA:0000935 +xref: MBA:564 +xref: UMLS:C0175233 {source="BIRNLEX:1668"} +is_a: UBERON:0009663 ! telencephalic nucleus +disjoint_from: UBERON:0002667 {source="lexical"} ! lateral septal nucleus +relationship: part_of UBERON:0007629 ! medial septal complex + +[Term] +id: UBERON:0001878 +name: septofimbrial nucleus +synonym: "nucleus septalis fimbrialis" RELATED LATIN [NeuroNames:264] +synonym: "nucleus septofibrialis" EXACT [BIRNLEX:730] +synonym: "nucleus septofimbrialis" RELATED [NeuroNames:264] +synonym: "scattered nucleus of the septum" EXACT [] +xref: BAMS:SF +xref: BAMS:SFi +xref: BAMS:SFN +xref: BIRNLEX:730 +xref: BM:SFN +xref: DHBA:13032 +xref: DMBA:15780 +xref: EMAPA:35767 +xref: FMA:61881 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=264 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=264 {source="BIRNLEX:730"} +xref: http://linkedlifedata.com/resource/umls/id/C0694603 +xref: MA:0000938 +xref: MBA:310 +xref: UMLS:C0694603 {source="BIRNLEX:730"} +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0002663 {source="NIFSTD"} ! septal nuclear complex + +[Term] +id: UBERON:0001879 +name: nucleus of diagonal band +def: "A brain structure that is part of the septal nuclear complex. It is connected with the hippocampus, hypothalamus and amygdala." [ncithesaurus:Nucleus_of_Diagonal_Band] +synonym: "area olfactoria (Roberts)" RELATED LATIN [NeuroNames:265] +synonym: "diagonal band nucleus" EXACT [] +synonym: "diagonal nucleus" RELATED [NeuroNames:265] +synonym: "nuclei of horizontal and vertical limbs of diagonal band" RELATED [NeuroNames:265] +synonym: "nucleus fasciculi diagonalis Brocae" RELATED LATIN [NeuroNames:265] +synonym: "nucleus of diagonal band (of Broca)" EXACT [] +synonym: "nucleus of the diagonal band" RELATED [NeuroNames:265] +synonym: "nucleus of the diagonal band of Broca" EXACT [] +synonym: "olfactory area (roberts)" EXACT [] +xref: BAMS:DB +xref: BAMS:NDB +xref: BIRNLEX:719 +xref: DHBA:10354 +xref: EHDAA2:0004708 +xref: EMAPA:35598 +xref: FMA:61882 +xref: HBA:4309 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=265 {source="BIRNLEX:719"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=265 +xref: http://en.wikipedia.org/wiki/Nucleus_of_diagonal_band +xref: http://linkedlifedata.com/resource/umls/id/C0175227 +xref: MA:0000936 +xref: MBA:596 +xref: NCIT:C97342 +xref: UMLS:C0175227 {source="BIRNLEX:719"} +xref: UMLS:C0175227 {source="ncithesaurus:Nucleus_of_Diagonal_Band"} +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0007629 {source="MA"} ! medial septal complex + +[Term] +id: UBERON:0001880 +name: bed nucleus of stria terminalis +def: "A brain structure in the forebrain wrapped around the stria terminalis. It's largest extent can be found around the crossing of the anterior commissure[INCF]." [http://en.wikipedia.org/wiki/Stria_terminalis#Bed_nucleus_of_the_stria_terminalis, INCF:Seattle_mtg_2010] +subset: efo_slim +synonym: "bed nuclei of the stria terminalis" EXACT PLURAL [ABA:BST] +synonym: "bed nuclei of the stria terminalis" RELATED [BAMS:BST] +synonym: "bed nucleus of the stria terminalis" EXACT [BIRNLEX:724] +synonym: "bed nucleus stria terminalis (Johnson)" EXACT [BIRNLEX:724] +synonym: "bed nucleus striae terminalis" EXACT [XAO:0004541] +synonym: "BST" BROAD ABBREVIATION [INCF:Seattle_mtg_2010] +synonym: "intercalate nucleus of stria terminalis" EXACT [] +synonym: "interstitial nucleus of stria terminalis" EXACT [BIRNLEX:724] +synonym: "nuclei of stria terminalis" EXACT [] +synonym: "nucleus interstitialis striae terminalis" RELATED LATIN [NeuroNames:267] +synonym: "nucleus of stria terminalis" EXACT [FMA:61884] +synonym: "nucleus of the stria terminalis" RELATED [NeuroNames:267] +synonym: "nucleus proprius stria terminalis (bed nucleus)" RELATED [BAMS:BST] +synonym: "nucleus striae terminalis" EXACT LATIN [FMA:61884, FMA:TA] +synonym: "stria terminalis nucleus" EXACT [] +xref: BAMS:Bed.n.term. +xref: BAMS:BST +xref: BAMS:bst +xref: BAMS:ST +xref: BAMS:stb +xref: BAMS:StT +xref: Bed_nucleus_of_the_stria_terminalis +xref: BIRNLEX:724 +xref: BM:BNST +xref: BTO:0002698 +xref: DHBA:10384 +xref: EFO:0001971 +xref: EMAPA:35169 +xref: FMA:61884 +xref: HBA:4313 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=267 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=267 {source="BIRNLEX:724"} +xref: http://linkedlifedata.com/resource/umls/id/C0228365 +xref: MA:0000925 +xref: MBA:351 +xref: UMLS:C0228365 {source="BIRNLEX:724"} +xref: XAO:0004541 +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0002663 {source="EMAPA", source="FMA"} ! septal nuclear complex +relationship: surrounds UBERON:0003029 ! stria terminalis + +[Term] +id: UBERON:0001881 +name: island of Calleja +def: "One of the seven small groups of granule cells in the polymorph layer of the olfactory tubercle and one large group, the insula magna, which lies along the border between septum, nucleus accumbens and nucleus of the diagonal band." [http://www.ncbi.nlm.nih.gov/pubmed/80412, MP:0010010] +subset: pheno_slim +subset: uberon_slim +synonym: "Calleja island" EXACT [] +synonym: "insula callejae" RELATED LATIN [http://en.wikipedia.org/wiki/Islands_of_Calleja] +synonym: "insulae olfactoriae" RELATED LATIN [http://en.wikipedia.org/wiki/Islands_of_Calleja] +synonym: "islands of Calleja" EXACT [] +synonym: "islands of Calleja (olfactory tubercle)" RELATED [NeuroNames:276] +xref: BAMS:ICj +xref: BAMS:IClj +xref: BAMS:ISC +xref: BAMS:isl +xref: BIRNLEX:1113 +xref: BM:Tel-ISC +xref: DHBA:10358 +xref: EMAPA:35452 +xref: FMA:61888 +xref: GAID:632 +xref: HBA:265504792 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=276 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=276 {source="BIRNLEX:1113"} +xref: http://en.wikipedia.org/wiki/Islands_of_Calleja +xref: http://linkedlifedata.com/resource/umls/id/C0262264 +xref: MA:0000977 +xref: MBA:481 +xref: MESH:A08.186.211.577.699.400 +xref: PBA:10095 +xref: UMLS:C0262264 {source="BIRNLEX:1113"} +is_a: UBERON:0009663 ! telencephalic nucleus +disjoint_from: UBERON:0010010 {source="NIFSTD"} ! basal nucleus of telencephalon +relationship: contributes_to_morphology_of UBERON:0001882 ! nucleus accumbens +relationship: contributes_to_morphology_of UBERON:0001883 ! olfactory tubercle +relationship: part_of UBERON:0001869 ! cerebral hemisphere + +[Term] +id: UBERON:0001882 +name: nucleus accumbens +def: "A region of the brain consisting of a collection of neurons located in the forebrain ventral to the caudate and putamen. (caudoputamen in rodent) and continuous with these structures. There is no distinct boundary between the nucleus accumbens and the caudate/putamen, but in rodents, it can be identified by its lack of traversing fiber bundles in comparison to the dorsal striatum. Its principle neuron is the medium spiny neuron. Together with the neostriatum (caudate nucleus and putamen), the nucleus accumbens forms the striatum." [BIRNLEX:727] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "accumbens nucleus" EXACT [FMA:61889] +synonym: "colliculus nuclei caudati" RELATED LATIN [NeuroNames:277] +synonym: "colliculus of caudate nucleus" EXACT [FMA:61889] +synonym: "nucleus accumbens septi" EXACT [FMA:61889, http://en.wikipedia.org/wiki/Nucleus_accumbens] +xref: BAMS:ACB +xref: BAMS:Acb +xref: BAMS:ACC +xref: BIRNLEX:727 +xref: BM:Ac +xref: BTO:0001862 +xref: DHBA:10339 +xref: EFO:0000906 +xref: EHDAA2:0004707 +xref: EMAPA:32789 +xref: FMA:61889 +xref: GAID:672 +xref: HBA:4290 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=277 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=277 {source="BIRNLEX:727"} +xref: http://linkedlifedata.com/resource/umls/id/C0028633 +xref: http://www.snomedbrowser.com/Codes/Details/427667007 +xref: MA:0000892 +xref: MAT:0000512 +xref: MBA:56 +xref: MESH:A08.186.211.730.885.105.683 +xref: NCIT:C52733 +xref: Nucleus:accumbens +xref: PBA:10092 +xref: UMLS:C0028633 {source="ncithesaurus:Accumbens_Nucleus"} +is_a: UBERON:0009663 ! telencephalic nucleus +disjoint_from: UBERON:0010010 {source="NIFSTD"} ! basal nucleus of telencephalon +relationship: contributes_to_morphology_of UBERON:0005403 ! ventral striatum +relationship: part_of UBERON:0000349 {source="FMA", source="GO"} ! limbic system +relationship: part_of UBERON:0001869 ! cerebral hemisphere +relationship: part_of UBERON:0005403 {source="MA"} ! ventral striatum +relationship: present_in_taxon NCBITaxon:8782 {source="ISBN:0471888893"} + +[Term] +id: UBERON:0001883 +name: olfactory tubercle +def: "Region in the ventral telencephalon, prominent in rodents, but present in all mammals, consisting of a laminated cortical part and the cap/hilus region. It is traditionally viewed as part of the olfactory cortex but recognized by some as having a striatal character. According to many authors, the structure of the OT transitions from cortical like to striatal like along the lateral medial axis. (Maryann Martone)" [NLXANAT:1005037] +subset: pheno_slim +subset: uberon_slim +synonym: "tuberculum olfactorium" EXACT LATIN [] +xref: BAMS:DLT +xref: BAMS:OLT +xref: BAMS:OT +xref: BAMS:Tu +xref: BM:Tel-OLT +xref: BTO:0001869 +xref: DHBA:10310 +xref: EHDAA2:0004701 +xref: EMAPA:35616 +xref: EV:0100177 +xref: HBA:10145 +xref: MA:0000976 +xref: MBA:754 +xref: NLXANAT:1005037 +xref: Olfactory:tubercle +xref: PBA:10096 +xref: VHOG:0001625 +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: contributes_to_morphology_of UBERON:0002894 ! olfactory cortex +relationship: dubious_for_taxon NCBITaxon:9443 {editor_note="check EHDAA2", source="MP"} +relationship: part_of UBERON:0002894 {source="EHDAA2-inferred", source="MA", source="VHOG", source="Wikipedia"} ! olfactory cortex + +[Term] +id: UBERON:0001884 +name: phrenic nerve +def: "A nerve that arises from the caudal cervical nerves and is primarily the motor nerve of the diaphragm but also sends sensory fibers to the pericardium." [VHOG:0000728] +subset: pheno_slim +subset: uberon_slim +synonym: "diaphragmatic nerve" RELATED [BTO:0001063] +synonym: "nervus phrenicus" RELATED LATIN [http://en.wikipedia.org/wiki/Phrenic_nerve] +synonym: "nervus phrenicus" RELATED [BTO:0001063] +synonym: "phrenic" RELATED [BTO:0001063] +xref: BAMS:phn +xref: BTO:0001063 +xref: EHDAA:4677 +xref: EMAPA:17813 +xref: FMA:6191 +xref: GAID:848 +xref: http://linkedlifedata.com/resource/umls/id/C0031774 +xref: http://www.snomedbrowser.com/Codes/Details/280344009 +xref: MA:0001170 +xref: MESH:D010791 +xref: NCIT:C52813 +xref: OpenCyc:Mx4rvtmdUJwpEbGdrcN5Y29ycA +xref: Phrenic:nerve +xref: UMLS:C0031774 {source="ncithesaurus:Phrenic_Nerve"} +xref: VHOG:0000728 +is_a: UBERON:0003443 ! thoracic cavity nerve +is_a: UBERON:0003473 ! thoracic cavity artery +intersection_of: UBERON:0001021 ! nerve +intersection_of: supplies UBERON:0001103 ! diaphragm +relationship: branching_part_of UBERON:0000962 ! nerve of cervical vertebra +relationship: part_of UBERON:0000962 ! nerve of cervical vertebra +relationship: supplies UBERON:0001103 ! diaphragm + +[Term] +id: UBERON:0001885 +name: dentate gyrus of hippocampal formation +def: "Part of the hippocampal formation forming a 'V' or 'U' shaped structure with the opening bounded by hippocampal area CA3. It consists of 3 layers from superficial to deep: molecular, granule cell and polymorphic or hilar layer." [BIRNLEX:1178] +comment: BTO says dentate gyrus = fascia dentata + hilus. Note that GO classifies dentate gyrus development under hippocampus development +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "area dentata" EXACT [] +synonym: "dentate area" RELATED [DHBA:10295] +synonym: "dentate area (dentate gyrus)" EXACT [DHBA:10295] +synonym: "dentate gyrus" EXACT [] +synonym: "fascia dentata" NARROW [] +synonym: "gyrus dentatus" RELATED [BTO:0002496] +synonym: "gyrus dentatus" RELATED LATIN [http://en.wikipedia.org/wiki/Dentate_gyrus] +synonym: "hippocampal dentate gyrus" RELATED [BTO:0002496] +xref: BAMS:DG +xref: BIRNLEX:1178 +xref: BM:Tel-DG +xref: BTO:0002496 +xref: BTO:0002615 +xref: CALOHA:TS-2388 +xref: Dentate:gyrus +xref: DHBA:10295 +xref: DMBA:16115 +xref: EFO:0001366 +xref: EMAPA:19037 +xref: FMA:61922 +xref: GAID:624 +xref: HBA:12891 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=179 +xref: http://linkedlifedata.com/resource/umls/id/C0152314 +xref: http://www.snomedbrowser.com/Codes/Details/279211002 +xref: MA:0000190 +xref: MBA:726 +xref: MESH:A08.186.211.577.405.200 +xref: NCIT:C32452 +xref: UMLS:C0152314 {source="ncithesaurus:Dentate_Gyrus"} +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002421 {source="MA"} ! hippocampal formation + +[Term] +id: UBERON:0001886 +name: choroid plexus +def: "A network formed by blood vessels and the tela choroidea which secretes CSF into the ventricular spaces." [http://en.wikipedia.org/wiki/Choroid_plexus, ISBN:0471888893] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "chorioid plexus" EXACT [FMA:61934] +synonym: "choroid plexus of cerebral hemisphere" RELATED [FMA:61934] +synonym: "CP" BROAD ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23375746] +synonym: "plexus choroideus" EXACT LATIN [FMA:61934, FMA:TA] +synonym: "plexus choroideus" RELATED LATIN [http://en.wikipedia.org/wiki/Choroid_plexus] +synonym: "ventricular choroid plexus" RELATED [] +xref: BAMS:CHP +xref: BAMS:chp +xref: BAMS:chpl +xref: BAMS:GHP +xref: BTO:0000258 +xref: CALOHA:TS-0145 +xref: Choroid:plexus +xref: EFO:0001915 +xref: EMAPA:32741 +xref: FMA:61934 +xref: GAID:607 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1377 +xref: http://linkedlifedata.com/resource/umls/id/C0008524 +xref: http://www.snomedbrowser.com/Codes/Details/264450003 +xref: MA:0000823 +xref: MBA:108 +xref: MESH:D002831 +xref: NCIT:C12694 +xref: TAO:0001443 +xref: UMLS:C0008524 {source="ncithesaurus:Choroid_Plexus"} +xref: VHOG:0001377 +xref: ZFA:0001443 +is_a: UBERON:0003947 ! brain ventricle/choroid plexus +is_a: UBERON:0005629 ! vascular plexus +is_a: UBERON:0006876 ! vasculature of organ +is_a: UBERON:0036303 ! vasculature of central nervous system +disjoint_from: UBERON:0005336 ! capillary layer of choroid +disjoint_from: UBERON:0010078 ! optic choroid vascular plexus +relationship: contributes_to_morphology_of UBERON:0003947 ! brain ventricle/choroid plexus +relationship: part_of UBERON:0004086 ! brain ventricle +relationship: part_of UBERON:0005283 ! tela choroidea + +[Term] +id: UBERON:0001887 +name: internal capsule of telencephalon +def: "White matter regional part of brain which is flanked by nuclear masses, consisting of both afferent and efferent fibers projecting between the cerebral cortex and the brainstem and spinal cord. It consists of three distinct parts: an anterior limb, posterior limb, and genu. (Adapted from MSH by Maryann Martone)." [BIRNLEX:1659] +subset: pheno_slim +subset: uberon_slim +synonym: "brain internal capsule" EXACT [MP:0008128] +synonym: "capsula interna" RELATED LATIN [http://en.wikipedia.org/wiki/Internal_capsule] +synonym: "internal capsule" BROAD [MA:0002748] +synonym: "internal capsule radiations" EXACT [] +xref: BAMS:ic +xref: BAMS:int +xref: BIRNLEX:1659 +xref: BM:IC +xref: DHBA:10581 +xref: DMBA:17770 +xref: EMAPA:18206 +xref: EMAPA:35437 +xref: FMA:61950 +xref: GAID:685 +xref: HBA:9263 +xref: http://linkedlifedata.com/resource/umls/id/C0152341 +xref: http://www.snomedbrowser.com/Codes/Details/85637007 +xref: Internal:capsule +xref: MA:0002748 +xref: MBA:6 +xref: MESH:D020772 +xref: NCIT:C13082 +xref: PBA:10102 +xref: UMLS:C0152341 {source="BIRNLEX:1659"} +xref: UMLS:C0152341 {source="ncithesaurus:Internal_Capsule"} +is_a: UBERON:0002437 ! cerebral hemisphere white matter + +[Term] +id: UBERON:0001888 +name: lateral olfactory stria +def: "White matter tract that contains projections from the olfactory bulb to the olfactory cortex (Maryann Martone)." [BIRNLEX:1559] +subset: uberon_slim +subset: vertebrate_core +synonym: "lateral olfactory stria" RELATED [FMA:61971] +synonym: "lateral olfactory stria" RELATED [NeuroNames:284] +synonym: "lateral olfactory tract" RELATED [NeuroNames:284] +synonym: "lateral olfactory tract, body" RELATED [NeuroNames:284] +synonym: "lateral olfactory tract. body" RELATED [BAMS:lot] +synonym: "LOT" RELATED ABBREVIATION [] +synonym: "olfactory tract" RELATED [NeuroNames:284] +synonym: "stria olfactoria lateralis" RELATED LATIN [NeuroNames:284] +synonym: "stria olfactoria lateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_olfactory_stria] +synonym: "tractus olfactorius lateralis" EXACT LATIN [ZFA:0000229] +synonym: "tractus olfactorius lateralis" RELATED LATIN [NeuroNames:284] +xref: BAMS:LDTR +xref: BAMS:lo +xref: BAMS:lot +xref: BAMS:LOTR +xref: BIRNLEX:1559 +xref: BM:Tel-LOT +xref: DHBA:12075 +xref: DMBA:17773 +xref: EV:0100175 +xref: FMA:61971 +xref: HBA:265505514 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=284 {source="BIRNLEX:1559"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=284 +xref: http://en.wikipedia.org/wiki/Lateral_olfactory_stria +xref: http://linkedlifedata.com/resource/umls/id/C0152330 +xref: http://www.snomedbrowser.com/Codes/Details/369107001 +xref: MBA:665 +xref: UMLS:C0152330 {source="BIRNLEX:1559"} +is_a: UBERON:0034730 ! olfactory tract linking bulb to ipsilateral dorsal telencephalon +disjoint_from: UBERON:0034734 {source="lexical"} ! medial olfactory stria + +[Term] +id: UBERON:0001889 +name: trunk of phrenic nerve +synonym: "phrenic nerve trunk" EXACT [] +synonym: "phrenic neural trunk" EXACT [] +xref: EHDAA2:0001463 +xref: EMAPA:37718 {source="MA:th"} +xref: FMA:6198 +xref: MA:0001177 +is_a: UBERON:0005476 ! spinal nerve trunk +intersection_of: UBERON:0002464 ! nerve trunk +intersection_of: part_of UBERON:0001884 ! phrenic nerve +relationship: part_of UBERON:0001884 ! phrenic nerve + +[Term] +id: UBERON:0001890 +name: forebrain +def: "The most anterior region the brain including both the telencephalon and diencephalon." [http://en.wikipedia.org/wiki/Forebrain, ZFIN:ZDB-PUB-961014-576] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "FB" BROAD ABBREVIATION [BIRNLEX:1509, NIFSTD:NeuroNames_abbrevSource] +synonym: "prosencephalon" RELATED [] +xref: AAO:0010147 +xref: BAMS:FB +xref: BAMS:Forebrain +xref: BIRNLEX:1509 +xref: BTO:0000478 +xref: CALOHA:TS-0380 +xref: DHBA:10156 +xref: DMBA:15566 +xref: EFO:0000909 +xref: EHDAA2:0000556 +xref: EHDAA:3470 +xref: EMAPA:16895 +xref: FMA:61992 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=27 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=27 {source="BIRNLEX:1509"} +xref: http://en.wikipedia.org/wiki/Forebrain +xref: http://linkedlifedata.com/resource/umls/id/C0085140 +xref: http://www.snomedbrowser.com/Codes/Details/362291003 +xref: MA:0000170 +xref: MAT:0000105 +xref: MESH:D016548 +xref: MIAA:0000105 +xref: NCIT:C40185 +xref: TAO:0000109 +xref: UMLS:C0085140 {source="ncithesaurus:Fore-Brain"} +xref: UMLS:C0085140 {source="BIRNLEX:1509"} +xref: VHOG:0000383 +xref: XAO:0000011 +xref: ZFA:0000109 +is_a: UBERON:0002616 ! regional part of brain +relationship: contributes_to_morphology_of UBERON:0000955 ! brain +relationship: develops_from UBERON:0003080 ! anterior neural tube +relationship: develops_from UBERON:0006240 ! future forebrain +relationship: immediate_transformation_of UBERON:0006240 {evidence="definitional"} ! future forebrain + +[Term] +id: UBERON:0001891 +name: midbrain +def: "The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)[GO]." [GO:0030901] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "MB" BROAD ABBREVIATION [BIRNLEX:1667, NIFSTD:NeuroNames_abbrevSource] +synonym: "mesencephalon" RELATED LATIN [http://en.wikipedia.org/wiki/Midbrain] +xref: AAO:0010149 +xref: BAMS:MES +xref: BIRNLEX:1667 +xref: BM:MB +xref: BTO:0000138 +xref: CALOHA:TS-0630 +xref: DHBA:10648 +xref: DMBA:16649 +xref: EFO:0000919 +xref: EHDAA2:0001162 +xref: EHDAA:3694 +xref: EMAPA:16974 +xref: EV:0100242 +xref: FMA:61993 +xref: HBA:9001 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=462 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=462 {source="BIRNLEX:1667"} +xref: http://en.wikipedia.org/wiki/Midbrain +xref: http://linkedlifedata.com/resource/umls/id/C0025462 +xref: http://www.snomedbrowser.com/Codes/Details/279099009 +xref: MA:0000207 +xref: MAT:0000106 +xref: MBA:313 +xref: MESH:D008636 +xref: MIAA:0000106 +xref: NCIT:C12510 +xref: OpenCyc:Mx4rvsBUqpwpEbGdrcN5Y29ycA +xref: RETIRED_EHDAA2:0001104 +xref: TAO:0000128 +xref: UMLS:C0025462 {source="ncithesaurus:Mesencephalon"} +xref: UMLS:C0025462 {source="BIRNLEX:1667"} +xref: VHOG:0000069 +xref: XAO:0000014 +xref: ZFA:0000128 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0000955 ! brain +relationship: develops_from UBERON:0009616 ! presumptive midbrain +relationship: has_developmental_contribution_from UBERON:0003849 {evidence="definitional"} ! mesencephalic neural crest +relationship: immediate_transformation_of UBERON:0009616 {source="Bgee:AN"} ! presumptive midbrain + +[Term] +id: UBERON:0001892 +name: rhombomere +def: "A segment of the developing hindbrain[ZFA]. In the vertebrate embryo, a rhombomere is a transiently divided segment of the developing neural tube, within the hindbrain region (a neuromere) in the area that will eventually become the rhombencephalon. The rhombomeres appear as a series of slightly constricted swellings in the neural tube, caudal to the cephalic flexure.[WP]." [http://en.wikipedia.org/wiki/Rhombomere, ZFIN:curator] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "future rhombencephalon" RELATED [MIAA:0000272] +synonym: "hindbrain neuromere" EXACT [] +synonym: "hindbrain neuromeres" EXACT PLURAL [DHBA:HNM] +synonym: "hindbrain segment" BROAD [ZFA:0001064] +synonym: "rhombomere" EXACT [] +synonym: "rhombomeres" RELATED PLURAL [VHOG:0000672] +synonym: "segment of hindbrain" BROAD [ZFA:0001064] +xref: DHBA:12664 +xref: EFO:0003617 +xref: EMAPA:16148 +xref: FMA:295666 +xref: http://en.wikipedia.org/wiki/Rhombomere +xref: MAT:0000272 +xref: MIAA:0000272 +xref: RETIRED_EHDAA2:0000669 +xref: TAO:0001064 +xref: VHOG:0000672 +xref: XAO:0004079 +xref: ZFA:0001064 +is_a: UBERON:0004731 ! neuromere +intersection_of: UBERON:0004731 ! neuromere +intersection_of: part_of UBERON:0007277 ! presumptive hindbrain +relationship: part_of UBERON:0007277 ! presumptive hindbrain + +[Term] +id: UBERON:0001893 +name: telencephalon +def: "Part of the forebrain consisting of paired olfactory bulbs and cerebral hemispheres." [AAO:0010479, XAO:0000012] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "cerebrum" EXACT [BTO:0000239, EMAPA:16910, FMA:62000, http://en.wikipedia.org/wiki/Talk\:Cerebrum/Archive_1, https://github.com/obophenotype/uberon/issues/1208] +synonym: "endbrain" EXACT [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=31, Swanson:2004] +synonym: "supratentorial region" BROAD [http://en.wikipedia.org/wiki/Tentorium_cerebelli] +xref: AAO:0010479 +xref: BAMS:CB +xref: BAMS:CH +xref: BAMS:IV +xref: BAMS:Tel +xref: BIRNLEX:1115 +xref: BM:Tel +xref: BTO:0000239 +xref: CALOHA:TS-1018 +xref: DHBA:10158 +xref: EFO:0000912 +xref: EHDAA2:0001982 +xref: EMAPA:16910 +xref: EV:0100165 +xref: FMA:62000 +xref: GAID:621 +xref: HBA:4007 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=31 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=31 {source="BIRNLEX:1115"} +xref: http://en.wikipedia.org/wiki/Telencephalon +xref: http://linkedlifedata.com/resource/umls/id/C0039452 +xref: http://www.snomedbrowser.com/Codes/Details/263353005 +xref: MA:0000183 +xref: MAT:0000421 +xref: MBA:567 +xref: MESH:D013687 +xref: MIAA:0000421 +xref: PBA:128011350 +xref: TAO:0000079 +xref: UMLS:C0039452 {source="BIRNLEX:1115"} +xref: VHOG:0000283 +xref: XAO:0000012 +xref: ZFA:0000079 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0014371 ! future telencephalon +relationship: immediate_transformation_of UBERON:0014371 {source="Bgee:AN"} ! future telencephalon +relationship: part_of UBERON:0001890 ! forebrain + +[Term] +id: UBERON:0001894 +name: diencephalon +def: "The division of the forebrain that develops from the foremost primary cerebral vesicle." [http://en.wikipedia.org/wiki/Diencephalon] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "between brain" EXACT [] +synonym: "betweenbrain" RELATED [BTO:0000342] +synonym: "DiE" BROAD ABBREVIATION [BIRNLEX:1503, NIFSTD:NeuroNames_abbrevSource] +synonym: "diencephalon" RELATED LATIN [http://en.wikipedia.org/wiki/Diencephalon] +synonym: "interbrain" EXACT [Swanson:2004] +synonym: "mature diencephalon" EXACT [FMA:62001] +synonym: "thalamencephalon" EXACT [MGI:anna] +xref: AAO:0010481 +xref: BAMS:DI +xref: BAMS:Di +xref: BAMS:DiE +xref: BAMS:IB +xref: BAMS:Zh. +xref: BIRNLEX:1503 +xref: BM:Die +xref: BTO:0000342 +xref: CALOHA:TS-0199 +xref: DHBA:10389 +xref: DMBA:16308 +xref: EFO:0000911 +xref: EHDAA2:0000385 +xref: EHDAA:1969 +xref: EHDAA:2645 +xref: EHDAA:3472 +xref: EMAPA:16896 +xref: EV:0100194 +xref: FMA:62001 +xref: GAID:618 +xref: HBA:4391 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=288 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=288 {source="BIRNLEX:1503"} +xref: http://en.wikipedia.org/wiki/Diencephalon +xref: http://linkedlifedata.com/resource/umls/id/C0012144 +xref: http://www.snomedbrowser.com/Codes/Details/279328001 +xref: MA:0000171 +xref: MAT:0000420 +xref: MBA:1129 +xref: MESH:A08.186.211.730.385 +xref: MIAA:0000420 +xref: NCIT:C12456 +xref: OpenCyc:Mx4rwC-V0JwpEbGdrcN5Y29ycA +xref: PBA:128013010 +xref: TAO:0000101 +xref: UMLS:C0012144 {source="BIRNLEX:1503"} +xref: UMLS:C0012144 {source="ncithesaurus:Diencephalon"} +xref: VHOG:0000318 +xref: XAO:0000013 +xref: ZFA:0000101 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0001890 ! forebrain +relationship: develops_from UBERON:0006222 ! future diencephalon +relationship: has_developmental_contribution_from UBERON:0003851 {evidence="definitional"} ! diencephalon neural crest +relationship: immediate_transformation_of UBERON:0006222 {evidence="definitional"} ! future diencephalon +relationship: part_of UBERON:0001890 ! forebrain +relationship: present_in_taxon NCBITaxon:7762 {notes="not well differentiated from the cerebrum. (Ariens, p. 868)", source="http://www.ncbi.nlm.nih.gov/pubmed/8932866"} + +[Term] +id: UBERON:0001895 +name: metencephalon +def: "Rostral segment of the hindbrain that has as its parts the pons (where present) and the cerebellum[WP,modified]." [http://en.wikipedia.org/wiki/Metencephalon, https://github.com/obophenotype/uberon/issues/300] +comment: the terms metencephalon and myelencephalon are only meaningful in mammals and birds[Neuroanatomy of the Zebrafish Brain]. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished in ZFA[ZFA]. +subset: pheno_slim +subset: uberon_slim +synonym: "epencephalon" BROAD INCONSISTENT [ncithesaurus:Epencephalon] +synonym: "epencephalon-2" EXACT [FMA:62003] +xref: BAMS:Met +xref: BIRNLEX:965 +xref: BTO:0000673 +xref: CALOHA:TS-2029 +xref: DHBA:10655 +xref: EHDAA2:0001149 +xref: EHDAA:5498 +xref: EMAPA:17071 +xref: FMA:62003 +xref: GAID:594 +xref: HBA:4833 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=543 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=543 {source="BIRNLEX:965"} +xref: http://en.wikipedia.org/wiki/Metencephalon +xref: http://linkedlifedata.com/resource/umls/id/C0376353 +xref: http://linkedlifedata.com/resource/umls/id/C1516904 +xref: MA:0000197 +xref: MESH:D020540 +xref: NCIT:C32741 +xref: UMLS:C0376353 {source="BIRNLEX:965"} +xref: UMLS:C1516904 {source="ncithesaurus:Epencephalon"} +xref: VHOG:0000741 +is_a: UBERON:0004733 ! segmental subdivision of hindbrain +relationship: contributes_to_morphology_of UBERON:0002028 ! hindbrain +property_value: dc-contributor https://github.com/cmungall +relationship: develops_from UBERON:0010092 ! future metencephalon +relationship: dubious_for_taxon NCBITaxon:7955 +relationship: immediate_transformation_of UBERON:0010092 {evidence="definitional"} ! future metencephalon + +[Term] +id: UBERON:0001896 +name: medulla oblongata +def: "Organ component of neuraxis that has as its parts the medullary reticular formation, inferior olivary complex and cochlear nuclear complex, among other structures[FMA]. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate[GO]." [FMA:62004, GO:0021550, http://en.wikipedia.org/wiki/Bone_marrow_of_ovary_oblongata] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "bulb" BROAD [] +synonym: "bulbus" EXACT LATIN [FMA:62004, FMA:TA] +synonym: "medulla" BROAD [ABA:MY] +synonym: "medulla oblonzata" RELATED LATIN [http://en.wikipedia.org/wiki/Medulla_oblongata] +synonym: "metepencephalon" RELATED [FMA:62004] +xref: AAO:0010486 +xref: BAMS:Md +xref: BAMS:MY +xref: BIRNLEX:957 +xref: BM:Me +xref: BTO:0000041 +xref: CALOHA:TS-0607 +xref: DMBA:17352 +xref: EFO:0000924 +xref: EHDAA2:0001088 +xref: EHDAA:7588 +xref: EMAPA:17550 +xref: EV:0100275 +xref: FMA:62004 +xref: GAID:590 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=698 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=698 {source="BIRNLEX:957"} +xref: http://en.wikipedia.org/wiki/Bone_marrow_of_ovary_oblongata +xref: http://linkedlifedata.com/resource/umls/id/C0025148 +xref: http://linkedlifedata.com/resource/umls/id/C1269575 +xref: http://www.snomedbrowser.com/Codes/Details/279104005 +xref: MA:0000206 +xref: MAT:0000111 +xref: MAT:0000367 +xref: MBA:354 +xref: MESH:D008526 +xref: MIAA:0000111 +xref: NCIT:C12442 +xref: OpenCyc:Mx4rvVjxSJwpEbGdrcN5Y29ycA +xref: OpenCyc:Mx4rwCqnXJwpEbGdrcN5Y29ycA +xref: TAO:0000545 +xref: UMLS:C0025148 {source="ncithesaurus:Medulla_Oblongata"} +xref: UMLS:C0025148 {source="BIRNLEX:957"} +xref: UMLS:C1269575 {source="BIRNLEX:957"} +xref: VHOG:0000181 +xref: XAO:0003100 +xref: ZFA:0000545 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002298 ! brainstem +relationship: part_of UBERON:0005290 ! myelencephalon + +[Term] +id: UBERON:0001897 +name: dorsal plus ventral thalamus +def: "Subcortical brain region consisting of paired gray matter bodies in the dorsal diencephalon and forming part of the lateral wall of the third ventricle of the brain. The thalamus represents the major portion of the diencephalon and is commonly divided into cellular aggregates known as nuclear groups.(MeSH). The dorsal topographic division of the interbrain. The macrodissected adult human thalamus was clearly illustrated by Vesalius in 1543 and the term as defined here was introduced by His in 1893. It includes the traditional epithalamus, dorsal thalamus, and ventral thalamus of Herrick (1910, pp. 494, 498). Also see Kuhlenbeck (1927, Ch. 9) and Jones (1985, p. 87)." [BIRNLEX:954] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "Th" BROAD ABBREVIATION [BIRNLEX:954, http://www.ncbi.nlm.nih.gov/pubmed/23375746, NIFSTD:NeuroNames_abbrevSource] +synonym: "thalamencephalon" RELATED LATIN [NeuroNames:300] +synonym: "thalami" RELATED PLURAL [VHOG:0000657] +synonym: "thalamus" BROAD [FMA:62007, MA:0000179] +synonym: "thalamus opticus" RELATED LATIN [NeuroNames:300] +synonym: "wider thalamus" EXACT [PMCID:PMC3345571] +xref: AAO:0010483 +xref: BAMS:TH +xref: BAMS:Th +xref: BIRNLEX:954 +xref: BTO:0001365 +xref: CALOHA:TS-1031 +xref: DHBA:10390 +xref: DMBA:16376 +xref: EFO:0000910 +xref: EMAPA:17540 +xref: EV:0100195 +xref: GAID:656 +xref: galen:Thalamus +xref: HBA:4392 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=300 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=300 {source="BIRNLEX:954"} +xref: http://en.wikipedia.org/wiki/Thalamus +xref: http://linkedlifedata.com/resource/umls/id/C0039729 +xref: http://www.snomedbrowser.com/Codes/Details/244433007 +xref: MA:0000179 +xref: MAT:0000109 +xref: MBA:549 +xref: MESH:A08.186.211.730.385.826 +xref: MIAA:0000109 +xref: NCIT:C12459 +xref: OpenCyc:Mx4rwMPQ65wpEbGdrcN5Y29ycA +xref: PBA:128013014 +xref: TAO:0001215 +xref: UMLS:C0039729 {source="BIRNLEX:954"} +xref: UMLS:C0039729 {source="ncithesaurus:Thalamus"} +xref: VHOG:0000657 +xref: ZFA:0001215 +is_a: UBERON:0002616 ! regional part of brain +relationship: contributes_to_morphology_of UBERON:0001894 ! diencephalon +relationship: in_lateral_side_of UBERON:0010225 {source="FMA-abduced-lr"} ! thalamic complex +relationship: part_of UBERON:0010225 ! thalamic complex + +[Term] +id: UBERON:0001898 +name: hypothalamus +def: "A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. [ZFA]. One of the most important functions of the hypothalamus is to link the nervous system to the endocrine system via the pituitary gland (hypophysis).[Wikipedia]." [http://en.wikipedia.org/wiki/Hypothalamus, ZFIN:curator] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "Hy" BROAD ABBREVIATION [BIRNLEX:734, NIFSTD:NeuroNames_abbrevSource] +synonym: "hypothalamus" RELATED LATIN [http://en.wikipedia.org/wiki/Hypothalamus] +synonym: "preoptico-hypothalamic area" EXACT [] +synonym: "preoptico-hypothalamic region" EXACT [] +xref: AAO:0010484 +xref: BAMS:HY +xref: BAMS:Hy +xref: BIRNLEX:734 +xref: BM:Die-Hy +xref: BTO:0000614 +xref: CALOHA:TS-0469 +xref: DHBA:10467 +xref: EFO:0000107 +xref: EHDAA2:0000802 +xref: EHDAA:5446 +xref: EMAPA:17536 +xref: EV:0100225 +xref: FMA:62008 +xref: GAID:460 +xref: galen:Hypothalamus +xref: HBA:4540 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=292 {source="BIRNLEX:734"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=292 +xref: http://en.wikipedia.org/wiki/Hypothalamus +xref: http://linkedlifedata.com/resource/umls/id/C0020663 +xref: http://www.snomedbrowser.com/Codes/Details/264483005 +xref: MA:0000173 +xref: MAT:0000112 +xref: MBA:1097 +xref: MESH:A08.186.211.577.482 +xref: MIAA:0000112 +xref: NCIT:C12458 +xref: OpenCyc:Mx4rwEgr9JwpEbGdrcN5Y29ycA +xref: TAO:0000032 +xref: UMLS:C0020663 {source="BIRNLEX:734"} +xref: UMLS:C0020663 {source="ncithesaurus:Hypothalamus"} +xref: VHOG:0000179 +xref: XAO:0004070 +xref: ZFA:0000032 +is_a: UBERON:0002616 ! regional part of brain +relationship: contributes_to_morphology_of UBERON:0001894 ! diencephalon +relationship: dubious_for_taxon NCBITaxon:7737 {notes="Lancelets possess a region similar to the hypothalamus (Murakami, 2005)"} +relationship: part_of UBERON:0000349 ! limbic system +relationship: part_of UBERON:0010225 {missing_from="FMA", source="EHDAA2", source="Wikipedia"} ! thalamic complex +relationship: present_in_taxon NCBITaxon:117569 {source="Ariens, p. 1192"} +relationship: present_in_taxon NCBITaxon:7742 + +[Term] +id: UBERON:0001899 +name: epithalamus +def: "Most dorsal part of the thalamus, comprising the pineal gland and habenular nuclei in most vertebrates. In a few vertebrates, it also includes the parietal eye. (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 2nd ed, 2005, pg. 345-346." [BIRNLEX:1710] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "epithalamus" RELATED LATIN [http://en.wikipedia.org/wiki/Epithalamus] +synonym: "ETh" BROAD ABBREVIATION [BIRNLEX:1710, NIFSTD:NeuroNames_abbrevSource] +xref: AAO:0010482 +xref: BAMS:EPI +xref: BAMS:Epi +xref: BAMS:EpT +xref: BAMS:ETh +xref: BIRNLEX:1710 +xref: BM:Die-Epi +xref: BTO:0000175 +xref: CALOHA:TS-2060 +xref: DHBA:10451 +xref: EFO:0000918 +xref: EHDAA2:0000448 +xref: EHDAA:5433 +xref: EMAPA:17532 +xref: EV:0100220 +xref: FMA:62009 +xref: GAID:455 +xref: HBA:4520 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=292 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=292 {source="BIRNLEX:1710"} +xref: http://en.wikipedia.org/wiki/Epithalamus +xref: http://linkedlifedata.com/resource/umls/id/C0152361 +xref: http://www.snomedbrowser.com/Codes/Details/281487003 +xref: MA:0000172 +xref: MAT:0000422 +xref: MBA:958 +xref: MESH:A08.186.211.577.200 +xref: MIAA:0000422 +xref: NCIT:C12457 +xref: OpenCyc:Mx4rvneLQpwpEbGdrcN5Y29ycA +xref: PBA:128013147 +xref: TAO:0000509 +xref: UMLS:C0152361 {source="ncithesaurus:Epithalamus"} +xref: UMLS:C0152361 {source="BIRNLEX:1710"} +xref: VHOG:0000178 +xref: ZFA:0000509 +is_a: UBERON:0002616 ! regional part of brain +relationship: contributes_to_morphology_of UBERON:0001894 ! diencephalon +relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus +relationship: present_in_taxon NCBITaxon:7742 + +[Term] +id: UBERON:0001900 +name: ventral thalamus +def: "Anterior part of the diencephalon that lies between the dorsal thalamus, hypothalamus, and tegmentum of the mesencephalon, including subthalamic nucleus, zona incerta, the fields of Forel, and the nucleus of ansa lenticularis[GO, modified]." [GO:0021539] +comment: Some sources treat the subthalamus as distinct from the thalamus, separated by the zona limitans intrathalamica. In MA, the ventral thalamus is part of the thalamus. Butler Hodos who identify a dorsal to ventral sequence consisting of epithalamus, dorsal thalamus, ventral thalamus and hypothalamus. We solve this by considering dorsal and ventral thalamus distinct, and the label thalamus as being ambiguous w.r.t thalamus proper (dorsal thalamus) or wider thalamus (dorsal plus ventral) +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "perithalamus" RELATED [http://en.wikipedia.org/wiki/Thalamus] +synonym: "prethalamus" RELATED DEVELOPMENTAL [http://en.wikipedia.org/wiki/Thalamus] +synonym: "SbTh" BROAD ABBREVIATION [BIRNLEX:708, NIFSTD:NeuroNames_abbrevSource] +synonym: "subthalamic region" EXACT [BIRNLEX:708, FMA:62010] +synonym: "subthalamus" EXACT [BIRNLEX:708, http://en.wikipedia.org/wiki/Thalamus] +synonym: "thalamus ventralis" EXACT LATIN [BIRNLEX:708] +synonym: "ventral thalamus" EXACT [GO:0021539] +synonym: "ventral thalamus" EXACT [MA:0000181] +xref: BAMS:SbTh +xref: BAMS:Ventral_thalamus +xref: BAMS:VNT +xref: BAMS:VT +xref: BIRNLEX:708 +xref: BM:Die-VTh +xref: CALOHA:TS-2048 +xref: DHBA:10461 +xref: DMBA:16310 +xref: EHDAA2:0004470 +xref: EMAPA:35915 +xref: EV:0100223 +xref: FMA:62010 +xref: GAID:653 +xref: HBA:4504 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=434 {source="BIRNLEX:708"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=434 +xref: http://en.wikipedia.org/wiki/Subthalamus +xref: http://linkedlifedata.com/resource/umls/id/C0152349 +xref: http://www.snomedbrowser.com/Codes/Details/279332007 +xref: MA:0000181 +xref: MESH:A08.186.211.730.385.800 +xref: NCIT:C52731 +xref: TAO:0000458 +xref: UMLS:C0152349 {source="BIRNLEX:708"} +xref: UMLS:C0152349 {source="ncithesaurus:Ventral_Thalamus"} +xref: ZFA:0000458 +is_a: UBERON:0002616 ! regional part of brain +relationship: contributes_to_morphology_of UBERON:0001894 ! diencephalon +relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus +relationship: present_in_taxon NCBITaxon:117569 {source="Ariens, p. 1192"} +relationship: present_in_taxon NCBITaxon:7742 + +[Term] +id: UBERON:0001901 +name: epithelium of trachea +alt_id: UBERON:0003227 +def: "the epithelial lining of the trachea which contains numerous ciliated cells" [ISBN:0-397-51047-0, MGI:cwg, MP:0002285] +subset: pheno_slim +synonym: "epithelial tissue of trachea" EXACT [OBOL:automatic] +synonym: "epithelial tissue of windpipe" EXACT [OBOL:automatic] +synonym: "epithelium of windpipe" EXACT [OBOL:automatic] +synonym: "trachea epithelial tissue" EXACT [OBOL:automatic] +synonym: "trachea epithelium" EXACT [] +synonym: "tracheal epithelium" EXACT [] +synonym: "windpipe epithelial tissue" EXACT [OBOL:automatic] +synonym: "windpipe epithelium" EXACT [OBOL:automatic] +xref: BTO:0001389 +xref: CALOHA:TS-1061 +xref: EHDAA2:0002069 +xref: EHDAA:5007 +xref: EMAPA:16855 +xref: EMAPA:18409 +xref: FMA:62015 +xref: http://linkedlifedata.com/resource/umls/id/C1179002 +xref: MA:0001862 +xref: NCIT:C33797 +xref: UMLS:C1179002 {source="ncithesaurus:Tracheal_Epithelium"} +xref: VHOG:0001045 +is_a: UBERON:0008397 ! tracheobronchial epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0003126 ! trachea +relationship: contributes_to_morphology_of UBERON:0003126 ! trachea +relationship: develops_from UBERON:0003258 ! endoderm of foregut +relationship: part_of UBERON:0003126 ! trachea + +[Term] +id: UBERON:0001902 +name: epithelium of small intestine +def: "An epithelium that is part of a small intestine [Automatically generated definition]." [OBOL:automatic] +subset: vertebrate_core +synonym: "epithelial tissue of small bowel" EXACT [OBOL:automatic] +synonym: "epithelial tissue of small intestine" EXACT [OBOL:automatic] +synonym: "epithelium of small bowel" EXACT [OBOL:automatic] +synonym: "mid intestine epithelium" EXACT [ZFA:0005127] +synonym: "small bowel epithelial tissue" EXACT [OBOL:automatic] +synonym: "small bowel epithelium" EXACT [OBOL:automatic] +synonym: "small intestinal epithelium" EXACT [] +synonym: "small intestine epithelial tissue" EXACT [OBOL:automatic] +synonym: "small intestine epithelium" EXACT [] +xref: BTO:0001258 +xref: CALOHA:TS-2104 +xref: EMAPA:35778 +xref: FMA:62017 +xref: http://www.snomedbrowser.com/Codes/Details/45480009 +xref: MA:0001553 +xref: TAO:0005127 +xref: ZFA:0005127 +is_a: UBERON:0001277 ! intestinal epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002108 ! small intestine +relationship: part_of UBERON:0001204 ! mucosa of small intestine + +[Term] +id: UBERON:0001903 +name: thalamic reticular nucleus +def: "The thalamic reticular nucleus is part of the ventral thalamus that forms a capsule around the thalamus laterally. It is separated from the thalamus by the external medullary lamina. Reticular cells are GABAergic, and have discoid dendritic arbors in the plane of the nucleus. Thalamic Reticular Nucleus is variously abbreviated TRN, RTN, NRT, and RT. [WP,unvetted]." [http://en.wikipedia.org/wiki/Thalamic_reticular_nucleus] +subset: uberon_slim +synonym: "nuclei reticulares (thalami)" RELATED LATIN [NeuroNames:365] +synonym: "nucleus reticularis" RELATED LATIN [NeuroNames:365] +synonym: "nucleus reticularis thalami" EXACT LATIN [FMA:62026, FMA:TA] +synonym: "nucleus reticularis thalami" RELATED LATIN [http://en.wikipedia.org/wiki/Thalamic_reticular_nucleus] +synonym: "nucleus reticulatus (thalami)" RELATED LATIN [NeuroNames:365] +synonym: "nucleus thalamicus reticularis" RELATED LATIN [NeuroNames:365] +synonym: "reticular nuclear group" EXACT [] +synonym: "reticular nucleus of thalamus" EXACT [] +synonym: "reticular nucleus of the thalamus" EXACT [] +synonym: "reticular nucleus thalamus (Arnold)" RELATED [NeuroNames:365] +synonym: "reticular nucleus-2" EXACT [] +synonym: "reticular thalamic nucleus" EXACT [] +synonym: "reticulatum thalami (Hassler)" RELATED LATIN [NeuroNames:365] +xref: BAMS:RT +xref: BAMS:Rt +xref: BIRNLEX:1721 +xref: BM:Die-VTh-R +xref: DHBA:10464 +xref: EMAPA:35737 +xref: EV:0100214 +xref: FMA:62026 +xref: HBA:4506 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=365 {source="BIRNLEX:1721"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=365 +xref: http://en.wikipedia.org/wiki/Thalamic_reticular_nucleus +xref: http://www.snomedbrowser.com/Codes/Details/279164008 +xref: MA:0000876 +xref: MBA:262 +is_a: UBERON:0015234 ! nucleus of ventral thalamus + +[Term] +id: UBERON:0001904 +name: habenula +def: "A segment of the epithalamus that has as its parts the habenular nuclei and the habenular commissure[FMA,modified]." [FMA:62032, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "ganglion intercrurale" RELATED LATIN [NeuroNames:294] +synonym: "ganglion interpedunculare" RELATED LATIN [NeuroNames:294] +synonym: "habenula complex" EXACT LATIN [FMA:62032, FMA:TA] +synonym: "habenulae" RELATED [] +synonym: "habenular complex" RELATED [] +synonym: "habenular nuclei" RELATED [] +synonym: "Hb" BROAD ABBREVIATION [BIRNLEX:1611, NIFSTD:NeuroNames_abbrevSource] +synonym: "nuclei habenulares" RELATED LATIN [NeuroNames:294] +synonym: "nucleus habenularis" RELATED LATIN [NeuroNames:294] +synonym: "pineal peduncle" RELATED [BTO:0003684] +xref: BAMS:HB +xref: BAMS:Hb +xref: BIRNLEX:1611 +xref: BTO:0003684 +xref: EMAPA:35386 +xref: EV:0100222 +xref: FMA:62032 +xref: GAID:619 +xref: HBA:4522 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=294 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=294 {source="BIRNLEX:1611"} +xref: http://en.wikipedia.org/wiki/Habenula +xref: http://linkedlifedata.com/resource/umls/id/C0152362 +xref: http://www.snomedbrowser.com/Codes/Details/362389008 +xref: MA:0000830 +xref: MESH:A08.186.211.577.200.360 +xref: TAO:0000213 +xref: UMLS:C0152362 {source="BIRNLEX:1611"} +xref: ZFA:0000213 +is_a: UBERON:0002616 ! regional part of brain +relationship: contributes_to_morphology_of UBERON:0001899 ! epithalamus +relationship: part_of UBERON:0001899 ! epithalamus +relationship: present_in_taxon NCBITaxon:7762 {source="Butler, 1996, p. 303"} + +[Term] +id: UBERON:0001905 +name: pineal body +def: "A midline, cone like structure located in the dorso-caudal roof of the 3rd ventricle, attached by peduncles to the habenular and posterior commissures. The stalk contains nerve fibers, blood vessels, connective tissue and parenchymal cells (Paxinos, The Rat Central Nervous System, 2nd ed, pg 399)." [BIRNLEX:1184] +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "conarium" RELATED [BIRNLEX:1184] +synonym: "corpus pineale" EXACT [] +synonym: "epiphysis" RELATED INCONSISTENT [ZFA:0000019] +synonym: "epiphysis cerebri" RELATED [http://en.wikipedia.org/wiki/Epiphysis_cerebri] +synonym: "frontal organ" RELATED [VHOG:0000051] +synonym: "glandula pinealis" EXACT LATIN [FMA:TA] +synonym: "glandula pinealis" EXACT LATIN [FMA:62033, FMA:TA] +synonym: "Pi" BROAD ABBREVIATION [BIRNLEX:1184, NIFSTD:NeuroNames_abbrevSource] +synonym: "pineal" RELATED [VHOG:0000051] +synonym: "pineal gland" EXACT [FMA:62033] +synonym: "pineal gland (Galen)" RELATED [NeuroNames:297] +synonym: "pineal organ" EXACT [ZFA:0000019] +synonym: "stirnorgan" RELATED [VHOG:0000051] +xref: AAO:0010549 +xref: BAMS:Pi +xref: BAMS:PIN +xref: BIRNLEX:1184 +xref: BM:P +xref: BTO:0001067 +xref: CALOHA:TS-0789 +xref: DHBA:10460 +xref: EFO:0000865 +xref: EHDAA2:0001466 +xref: EHDAA:7523 +xref: EMAPA:18778 +xref: EV:0100131 +xref: EV:0100221 +xref: FMA:62033 +xref: GAID:453 +xref: galen:PinealGland +xref: HBA:4532 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=297 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=297 {source="BIRNLEX:1184"} +xref: http://linkedlifedata.com/resource/umls/id/C0031939 +xref: http://www.snomedbrowser.com/Codes/Details/181126002 +xref: MA:0000175 +xref: MAT:0000448 +xref: MBA:953 +xref: MESH:D010870 +xref: NCIT:C12398 +xref: NLXANAT:1010009 +xref: OpenCyc:Mx4rv2FMGpwpEbGdrcN5Y29ycA +xref: Pineal:gland +xref: TAO:0000019 +xref: UMLS:C0031939 {source="ncithesaurus:Pineal_Gland"} +xref: UMLS:C0031939 {source="BIRNLEX:1184"} +xref: VHOG:0000051 +xref: XAO:0000160 +xref: ZFA:0000019 +is_a: UBERON:0003296 ! gland of diencephalon +is_a: UBERON:0010134 {source="MA"} ! secretory circumventricular organ +relationship: contributes_to_morphology_of UBERON:0001899 ! epithalamus +relationship: part_of UBERON:0015238 {source="ZFA", source="various"} ! pineal complex +relationship: present_in_taxon NCBITaxon:117569 {source="Hardisty, p. 310"} + +[Term] +id: UBERON:0001906 +name: subthalamic nucleus +def: "The subthalamic nucleus is the lens-shaped nucleus located in the ventral part of the subthalamus on the inner aspect of the internal capsule that is concerned with the integration of somatic motor function[GO]." [GO:0021763] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "body of Forel" EXACT [] +synonym: "body of Luys" EXACT [] +synonym: "corpus Luysi" RELATED [http://en.wikipedia.org/wiki/Subthalamic_nucleus] +synonym: "corpus subthalamicum" RELATED LATIN [http://en.wikipedia.org/wiki/Subthalamic_nucleus] +synonym: "Luy's body" RELATED [http://en.wikipedia.org/wiki/Subthalamic_nucleus] +synonym: "Luys' body" RELATED [BTO:0002252] +synonym: "Luys' nucleus" EXACT [] +synonym: "nucleus of corpus luysii" EXACT [] +synonym: "nucleus of Luys" EXACT [http://en.wikipedia.org/wiki/Subthalamic_nucleus] +synonym: "nucleus subthalamicus" EXACT LATIN [BTO:0002252, http://en.wikipedia.org/wiki/Subthalamic_nucleus] +synonym: "subthalamic nucleus (of Luys)" EXACT [] +synonym: "subthalamic nucleus of Luys" RELATED [http://en.wikipedia.org/wiki/Subthalamic_nucleus] +xref: BAMS:STh +xref: BAMS:STN +xref: BAMS:SUB +xref: BM:Die-Sb +xref: BTO:0002252 +xref: CALOHA:TS-1154 +xref: DHBA:10466 +xref: EFO:0001392 +xref: EMAPA:35839 +xref: EV:0100224 +xref: FMA:62035 +xref: GAID:655 +xref: HBA:4518 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=435 +xref: http://linkedlifedata.com/resource/umls/id/C0152355 +xref: http://www.snomedbrowser.com/Codes/Details/361575000 +xref: MA:0000877 +xref: MBA:470 +xref: MESH:A08.186.211.730.385.800.800 +xref: NCIT:C12454 +xref: NLXANAT:1010002 +xref: Subthalamic:nucleus +xref: UMLS:C0152355 {source="ncithesaurus:Subthalamic_Nucleus"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +is_a: UBERON:0015234 ! nucleus of ventral thalamus +relationship: contributes_to_morphology_of UBERON:0001900 ! ventral thalamus +relationship: part_of UBERON:0002776 {notes="part of hypothalamus in ABA"} ! ventral nuclear group + +[Term] +id: UBERON:0001907 +name: zona incerta +def: "The zona incerta is a horizontally elongated region of gray matter cells in the subthalamus below the thalamus. Its connections project extensively over the brain from the cerebral cortex down into the spinal cord. Its function is unknown though several have been proposed related to 'limbic-motor integration' such as controlling visceral activity and pain; gating sensory input and synchronizing cortical and subcortical brain rhythms. Its dysfunction may play a role in central pain syndrome. It is also been identified as a promising deep brain stimulation therapy target for treating Parkinsons Disease. Its existence was first described by Auguste Forel in 1877 as a 'region of which nothing certain can be said'. A hundred and thirty years later in 2007, Nadia Urbain and Martin Deschênes of Université Laval noted that the 'zona incerta is among the least studied regions of the brain; its name does not even appear in the index of many textbooks. ' [WP,unvetted]." [http://en.wikipedia.org/wiki/Zona_incerta] +subset: uberon_slim +synonym: "nucleus of the zona incerta" RELATED [BAMS:ZI] +synonym: "zona incerta proper" RELATED [BAMS:ZI] +xref: BAMS:ZI +xref: BM:Die-VTh-ZI +xref: BTO:0003146 +xref: DHBA:10463 +xref: EMAPA:35930 +xref: FMA:62038 +xref: HBA:4507 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=438 +xref: http://www.snomedbrowser.com/Codes/Details/369186007 +xref: MA:0000878 +xref: MBA:797 +xref: Zona:incerta +is_a: UBERON:0015234 ! nucleus of ventral thalamus + +[Term] +id: UBERON:0001908 +name: optic tract +def: "Diencephalic white matter (tract) which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm[ZFA]. Predominantly white matter structure found in diencephalon consisting of fibers originating in the retina. The optic tract is considered to extend from the point of the optic chiasm and terminates largely, although not exclusively, in the lateral geniculate complex. Other fibers end in the superior colliculus and other structures in the diencephalon, midbrain and brainstem (MM)[NIF]." [http://en.wikipedia.org/wiki/Optic_tract, NIFSTD, ZFIN:curator] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "optic lemniscus" EXACT [] +synonym: "optic tracts" RELATED PLURAL [ZFA:0000252] +synonym: "tractus optici" RELATED LATIN [NeuroNames:460] +synonym: "tractus opticus" RELATED LATIN [http://en.wikipedia.org/wiki/Optic_tract] +synonym: "visual pathway" RELATED [GAID:735] +xref: BAMS:opt +xref: BIRNLEX:1684 +xref: BM:Tel-OT +xref: DHBA:10589 +xref: DMBA:17785 +xref: EMAPA:16678 +xref: EMAPA:35617 +xref: FMA:62046 +xref: GAID:735 +xref: HBA:9309 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=460 {source="BIRNLEX:1684"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=460 +xref: http://linkedlifedata.com/resource/umls/id/C0152405 +xref: http://www.snomedbrowser.com/Codes/Details/280952003 +xref: MA:0001099 +xref: MBA:125 +xref: MESH:D014795 +xref: NCIT:C33218 +xref: Optic:tract +xref: TAO:0000252 +xref: UMLS:C0152405 {source="BIRNLEX:1684"} +xref: UMLS:C0152405 {source="ncithesaurus:Optic_Tract"} +xref: VHOG:0001164 +xref: XAO:0004101 +xref: ZFA:0000252 +is_a: UBERON:0011591 ! tract of diencephalon +relationship: contributes_to_morphology_of UBERON:0003544 ! brain white matter +relationship: extends_fibers_into UBERON:0000941 ! cranial nerve II +relationship: extends_fibers_into UBERON:0000959 ! optic chiasma +relationship: innervates UBERON:0000966 ! retina +relationship: part_of UBERON:0002104 ! visual system +relationship: part_of UBERON:0003931 ! diencephalic white matter + +[Term] +id: UBERON:0001909 +name: habenular commissure +def: "A brain commissure that is situated in front of the pineal gland and connects the habenular nucleus on one side of the diencephalon with that on the other side." [http://en.wikipedia.org/wiki/Habenular_commissure, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "commissura habenularis" RELATED LATIN [NeuroNames:299] +synonym: "commissura habenularum" EXACT [ZFA:0000359] +synonym: "commissura habenularum" EXACT LATIN [http://en.wikipedia.org/wiki/Habenular_commissure] +synonym: "commissure habenularum" EXACT [MP:0008231] +synonym: "habenular commissure (Haller)" RELATED [NeuroNames:299] +synonym: "habenular commisure" RELATED [BAMS:hbc] +synonym: "HBC" BROAD ABBREVIATION [BIRNLEX:1609, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:hbc +xref: BAMS:HC +xref: BAMS:HG +xref: BIRNLEX:1609 +xref: BM:Die-Epi-HC +xref: DHBA:10566 +xref: DMBA:17768 +xref: EMAPA:37875 {source="MA:th"} +xref: FMA:62048 +xref: Habenular:commissure +xref: HBA:9227 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=299 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=299 {source="BIRNLEX:1609"} +xref: http://linkedlifedata.com/resource/umls/id/C0152363 +xref: http://www.snomedbrowser.com/Codes/Details/279335009 +xref: MBA:611 +xref: TAO:0000359 +xref: UMLS:C0152363 {source="BIRNLEX:1609"} +xref: ZFA:0000359 +is_a: UBERON:0005341 {source="MP"} ! ventral commissure +is_a: UBERON:0011590 ! commissure of diencephalon +is_a: UBERON:0025261 ! thalamic fiber tract +intersection_of: UBERON:0001020 ! nervous system commissure +intersection_of: connects UBERON:0008993 ! habenular nucleus +relationship: connects UBERON:0008993 ! habenular nucleus +relationship: part_of UBERON:0001904 {source="FMA"} ! habenula +relationship: part_of UBERON:0003931 {source="ZFA-modified"} ! diencephalic white matter + +[Term] +id: UBERON:0001910 +name: medial forebrain bundle +def: "The Medial forebrain bundle (MFB), is a complex bundle of axons coming from the basal olfactory regions, the periamygdaloid region, and the septal nuclei, and passing to the lateral hypothalamus, with some carrying on into the tegmentum. It contains both ascending and descending fibers. It also represents a part of the mesolimbic pathway, carrying information between the ventral tegmentum and the nucleus accumbens. It is commonly accepted that the MFB is a part of the reward system, involved in the integration of reward and pleasure. Electrical stimulation of the medial forebrain bundle is believed to cause sensations of pleasure. This hypothesis is based upon intracranial self-stimulation (ICSS) studies. Animals will work for MFB ICSS, and humans report that MFB ICSS is intensely pleasurable. This is most likely because the medial forebrain bundle carries information from the ventral tegmental area (VTA) to the nucleus accumbens (nAcc or Acb). The nAcc is a recognized reward center, and activation of the pathway from the VTA to the nAcc is believed to be rewarding, which is why it is sometimes referred to as the hedonic highway. [WP,unvetted]." [http://en.wikipedia.org/wiki/Medial_forebrain_bundle] +subset: uberon_slim +subset: vertebrate_core +synonym: "fasciculus longitudinalis telencephali medialis" RELATED LATIN [NeuroNames:433] +synonym: "fasciculus medialis telencephali" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_forebrain_bundle] +synonym: "fasciculus medialis telencephalicus" RELATED LATIN [NeuroNames:433] +synonym: "fasciculus prosencephalicus medialis" RELATED LATIN [NeuroNames:433] +synonym: "medial forebrain bundles" RELATED PLURAL [ZFA:0005111] +synonym: "medial forebrain fasciculus" EXACT [] +synonym: "median forebrain bundle" RELATED [NeuroNames:433] +synonym: "MFB" BROAD ABBREVIATION [BIRNLEX:908, NIFSTD:NeuroNames_abbrevSource] +synonym: "telencephalic medial fasciculus" EXACT [] +xref: BAMS:mfb +xref: BIRNLEX:908 +xref: DHBA:10587 +xref: FMA:62064 +xref: GAID:736 +xref: HBA:265505190 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=433 {source="BIRNLEX:908"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=433 +xref: http://en.wikipedia.org/wiki/Medial_forebrain_bundle +xref: http://linkedlifedata.com/resource/umls/id/C0025055 +xref: MBA:54 +xref: MESH:D008474 +xref: NCIT:C13083 +xref: TAO:0005111 +xref: UMLS:C0025055 {source="BIRNLEX:908"} +xref: UMLS:C0025055 {source="ncithesaurus:Medial_Forebrain_Bundle"} +xref: ZFA:0005111 +is_a: UBERON:0005838 ! fasciculus of brain +disjoint_from: UBERON:2007012 {source="lexical"} ! lateral forebrain bundle +relationship: part_of UBERON:0001898 {source="NIFSTD"} ! hypothalamus + +[Term] +id: UBERON:0001911 +name: mammary gland +def: "A specialized accessory gland of the skin of mammals that secretes milk. The gland is typically only developed in females, and regresses in males." [BTO:0000817, http://en.wikipedia.org/wiki/Mammary_gland, http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "Brustdruese" RELATED [BTO:0000817] +synonym: "dug" RELATED [http://en.wikipedia.org/wiki/Mammary_gland] +synonym: "glandula mammaria" EXACT LATIN [FMA:57983, FMA:TA] +synonym: "glandula mammaria" RELATED LATIN [http://en.wikipedia.org/wiki/Mammary_gland] +synonym: "lactiferous gland" EXACT [FMA:62088] +synonym: "lobe of breast" NARROW [] +synonym: "lobe of mammary gland" RELATED [FMA:62088] +synonym: "mamma" RELATED [BTO:0000817] +synonym: "mammae" RELATED PLURAL [] +synonym: "milk patch" NARROW [NCBITaxon:9255] +xref: BTO:0000817 +xref: CALOHA:TS-0595 +xref: EFO:0000854 +xref: EMAPA:17759 +xref: EV:0100125 +xref: FMA:286452 +xref: http://linkedlifedata.com/resource/umls/id/C0929301 +xref: http://www.snomedbrowser.com/Codes/Details/361720005 +xref: MA:0000145 +xref: Mammary:gland +xref: MAT:0000073 +xref: MESH:D008321 +xref: MIAA:0000073 +xref: NCIT:C12367 +xref: OpenCyc:Mx4rvVjVq5wpEbGdrcN5Y29ycA +xref: UMLS:C0929301 {source="ncithesaurus:Mammary_Gland"} +xref: VHOG:0000398 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0019319 ! exocrine gland of integumental system +relationship: develops_from UBERON:0005333 ! mammary bud +relationship: produces UBERON:0001913 ! milk + +[Term] +id: UBERON:0001912 +name: lobule of mammary gland +def: "Organ component of the mammary gland which consists of an aggregate of mammary alveoli that communicate with a lobular lactiferous duct.[FMA]" [FMA:62090] +subset: pheno_slim +subset: uberon_slim +synonym: "acinus of mammary gland" EXACT [FMA:62090] +synonym: "lactiferous acinus" EXACT [FMA:62090] +synonym: "lactiferous gland lobule" EXACT [FMA:62090] +synonym: "lactiferous lobule" EXACT [FMA:62090] +synonym: "lobule of lactiferous gland" EXACT [FMA:62090] +synonym: "lobule of mammary gland" EXACT [FMA:62090] +synonym: "mammary acinus" EXACT [FMA:62090] +synonym: "mammary gland lobule" EXACT [MA:0000793] +xref: EMAPA:36634 +xref: FMA:62090 +xref: MA:0000793 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0009911 {source="FMA"} ! lobule +relationship: contributes_to_morphology_of UBERON:0001911 ! mammary gland +relationship: part_of UBERON:0001911 ! mammary gland + +[Term] +id: UBERON:0001913 +name: milk +def: "An emulsion of fat globules within a fluid that is secreted by the mammary gland during lactation." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "mammary gland milk" EXACT [] +xref: Breast:milk +xref: BTO:0000868 +xref: CALOHA:TS-0636 +xref: EMAPA:36540 +xref: ENVO:02000031 +xref: EV:0100126 +xref: FMA:62100 +xref: GAID:1230 +xref: galen:Milk +xref: http://linkedlifedata.com/resource/umls/id/C1511310 +xref: MA:0002552 +xref: MAT:0000056 +xref: MESH:A13.622 +xref: MIAA:0000056 +xref: NCIT:C13401 +xref: OpenCyc:Mx4rvVjGZJwpEbGdrcN5Y29ycA +xref: UMLS:C1511310 {source="ncithesaurus:Breast_Fluid_or_Secretion"} +xref: VHOG:0001263 +is_a: UBERON:0006314 ! bodily fluid +is_a: UBERON:0006539 ! mammary gland fluid/secretion + +[Term] +id: UBERON:0001914 +name: colostrum +def: "The thin, yellow, serous fluid secreted by the mammary glands during pregnancy and immediately postpartum before lactation begins. It consists of immunologically active substances, white blood cells, water, protein, fat, and carbohydrates." [http://en.wikipedia.org/wiki/Colostrum, MESH:A12.200.194] +subset: uberon_slim +xref: BTO:0000276 +xref: CALOHA:TS-0167 +xref: FMA:62101 +xref: GAID:1159 +xref: http://en.wikipedia.org/wiki/Colostrum +xref: http://linkedlifedata.com/resource/umls/id/C0009413 +xref: MA:0002551 +xref: MESH:D003126 +xref: NCIT:C32348 +xref: UMLS:C0009413 {source="ncithesaurus:Colostrum"} +is_a: UBERON:0006539 ! mammary gland fluid/secretion + +[Term] +id: UBERON:0001915 +name: endothelium of capillary +def: "An endothelium that is part of a capillary [Automatically generated definition]." [OBOL:automatic] +synonym: "blood capillary endothelium" EXACT [OBOL:automatic] +synonym: "capillary endothelium" EXACT [] +synonym: "capillary vessel endothelium" EXACT [OBOL:automatic] +synonym: "endothelium of blood capillary" EXACT [OBOL:automatic] +synonym: "endothelium of capillary vessel" EXACT [OBOL:automatic] +xref: BTO:0004954 +xref: CALOHA:TS-0112 +xref: EMAPA:36292 +xref: FMA:62114 +xref: http://linkedlifedata.com/resource/umls/id/C0006904 +xref: MA:0000711 +xref: NCIT:C49215 +xref: UMLS:C0006904 {source="ncithesaurus:Capillary_Endothelium"} +is_a: UBERON:0004638 ! blood vessel endothelium +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0001982 ! capillary +relationship: part_of UBERON:0001982 ! capillary + +[Term] +id: UBERON:0001916 +name: endothelium of arteriole +def: "An endothelium that is part of an arteriole [Automatically generated definition]." [OBOL:automatic] +synonym: "arteriole endothelium" EXACT [] +xref: EMAPA:36286 +xref: FMA:62115 +xref: http://linkedlifedata.com/resource/umls/id/C1179024 +xref: MA:0000705 +xref: NCIT:C49192 +xref: UMLS:C1179024 {source="ncithesaurus:Arteriole_Endothelium"} +is_a: UBERON:0004638 ! blood vessel endothelium +is_a: UBERON:0004700 ! arterial system endothelium +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0001980 ! arteriole +relationship: part_of UBERON:0001980 ! arteriole + +[Term] +id: UBERON:0001917 +name: endothelium of artery +def: "An endothelium that is part of an artery [Automatically generated definition]." [OBOL:automatic] +synonym: "arterial endothelium" EXACT [] +synonym: "artery endothelium" EXACT [] +xref: AAO:0011013 +xref: BTO:0004757 +xref: EMAPA:35148 +xref: FMA:62116 +xref: http://linkedlifedata.com/resource/umls/id/C1179025 +xref: MA:0000707 +xref: NCIT:C49194 +xref: UMLS:C1179025 {source="ncithesaurus:Artery_Endothelium"} +xref: VHOG:0001215 +xref: XAO:0000357 +is_a: UBERON:0003915 ! endothelial tube +is_a: UBERON:0004638 ! blood vessel endothelium +is_a: UBERON:0004700 ! arterial system endothelium +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0001637 ! artery +relationship: part_of UBERON:0001637 ! artery + +[Term] +id: UBERON:0001918 +name: endothelium of venule +def: "An endothelium that is part of a venule [Automatically generated definition]." [OBOL:automatic] +synonym: "venule endothelium" EXACT [] +xref: EMAPA:36290 +xref: FMA:62117 +xref: http://linkedlifedata.com/resource/umls/id/C1179026 +xref: MA:0000716 +xref: NCIT:C49319 +xref: UMLS:C1179026 {source="ncithesaurus:Venule_Endothelium"} +is_a: UBERON:0004638 ! blood vessel endothelium +is_a: UBERON:0004701 ! venous system endothelium +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0001979 ! venule +relationship: part_of UBERON:0001979 ! venule + +[Term] +id: UBERON:0001919 +name: endothelium of vein +def: "An endothelium that is part of a vein [Automatically generated definition]." [OBOL:automatic] +synonym: "vein endothelium" EXACT [] +synonym: "veinous endothelium" RELATED [VHOG:0001216] +synonym: "venous endothelium" EXACT [] +xref: AAO:0011110 +xref: BTO:0004756 +xref: EMAPA:36288 +xref: FMA:62118 +xref: http://linkedlifedata.com/resource/umls/id/C1179027 +xref: MA:0000712 +xref: NCIT:C49317 +xref: UMLS:C1179027 {source="ncithesaurus:Vein_Endothelium"} +xref: VHOG:0001216 +xref: XAO:0000358 +is_a: UBERON:0004638 ! blood vessel endothelium +is_a: UBERON:0004701 ! venous system endothelium +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0001638 ! vein +relationship: part_of UBERON:0001638 ! vein + +[Term] +id: UBERON:0001920 +name: paraventricular nucleus of thalamus +def: "The nucleus paraventricularis anterior thalami and nuclues paraventricularis posterior thalami, two of the nuclei mediani thalami; they are situated on the dorsomedial wall of the thalamus, juxtaposed to the third ventricle." [Dorlands_Medical_Dictionary:MerckSource] +subset: pheno_slim +subset: uberon_slim +synonym: "nuclei paraventriculares thalami" EXACT LATIN [FMA:62152, FMA:TA] +synonym: "nucleus paramedianus (Hassler)" RELATED LATIN [NeuroNames:308] +synonym: "nucleus paraventricularis thalami" RELATED LATIN [NeuroNames:308] +synonym: "paraventricular gray" EXACT [] +synonym: "paraventricular nuclei" RELATED PLURAL [] +synonym: "paraventricular nuclei of thalamus" EXACT PLURAL [] +synonym: "paraventricular nucleus of the thalamus" RELATED [NeuroNames:308] +synonym: "paraventricular thalamic nucleus" EXACT [] +synonym: "PV" BROAD ABBREVIATION [BIRNLEX:764, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:PV +xref: BAMS:PVT +xref: BIRNLEX:764 +xref: BM:Die-Th-Pa +xref: BTO:0002460 +xref: DHBA:10457 +xref: EMAPA:35666 +xref: FMA:62152 +xref: HBA:4533 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=308 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=308 {source="BIRNLEX:764"} +xref: http://linkedlifedata.com/resource/umls/id/C0175253 +xref: http://www.snomedbrowser.com/Codes/Details/369163000 +xref: MA:0000866 +xref: MBA:149 +xref: UMLS:C0175253 {source="BIRNLEX:764"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: contributes_to_morphology_of UBERON:0001897 ! dorsal plus ventral thalamus +relationship: part_of UBERON:0002705 {source="FMA"} ! midline nuclear group + +[Term] +id: UBERON:0001921 +name: reuniens nucleus +synonym: "medioventral nucleus" EXACT [FMA:62153] +synonym: "nucleus endymalis (Hassler)" RELATED LATIN [NeuroNames:309] +synonym: "nucleus of reunions" RELATED [NeuroNames:309] +synonym: "nucleus reuniens" EXACT [] +synonym: "nucleus reuniens (Malone)" RELATED [NeuroNames:309] +synonym: "nucleus reuniens thalami" RELATED LATIN [NeuroNames:309] +synonym: "Re" BROAD ABBREVIATION [BIRNLEX:770, NIFSTD:NeuroNames_abbrevSource] +synonym: "reuniens nucleus of the thalamus" RELATED [BAMS:RE] +synonym: "reuniens thalamic nucleus" EXACT [FMA:62153] +xref: BAMS:RE +xref: BAMS:Re +xref: BIRNLEX:770 +xref: BTO:0002459 +xref: DHBA:10403 +xref: EMAPA:35602 +xref: FMA:62153 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=309 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=309 {source="BIRNLEX:770"} +xref: http://linkedlifedata.com/resource/umls/id/C0228327 +xref: http://www.snomedbrowser.com/Codes/Details/369164006 +xref: MA:0000865 +xref: MBA:181 +xref: UMLS:C0228327 {source="BIRNLEX:770"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0002705 {source="NIFSTD"} ! midline nuclear group + +[Term] +id: UBERON:0001922 +name: parafascicular nucleus +subset: pheno_slim +synonym: "nuclei parafasciculares thalami" EXACT [BIRNLEX:952] +synonym: "nucleus parafascicularis" EXACT [BIRNLEX:952] +synonym: "nucleus parafascicularis (Hassler)" EXACT [BIRNLEX:952] +synonym: "nucleus parafascicularis thalami" EXACT [BIRNLEX:952] +synonym: "parafascicular nucleus (vogt)" EXACT [BIRNLEX:952] +synonym: "parafascicular nucleus of thalamus" EXACT [] +synonym: "parafascicular nucleus of the thalamus" EXACT [BIRNLEX:952] +synonym: "parafascicular thalamic nucleus" EXACT [] +synonym: "PF" BROAD ABBREVIATION [BIRNLEX:952, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:PF +xref: BIRNLEX:952 +xref: BM:Die-Th-Pf +xref: DHBA:10450 +xref: DMBA:16442 +xref: EMAPA:35659 +xref: EV:0100202 +xref: FMA:62166 +xref: HBA:4439 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=324 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=324 {source="BIRNLEX:952"} +xref: http://linkedlifedata.com/resource/umls/id/C0228352 +xref: http://www.snomedbrowser.com/Codes/Details/279150008 +xref: MA:0000874 +xref: MBA:930 +xref: NCIT:C33260 +xref: UMLS:C0228352 {source="ncithesaurus:Parafascicular_Nucleus_of_the_Thalamus"} +xref: UMLS:C0228352 {source="BIRNLEX:952"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: contributes_to_morphology_of UBERON:0001897 ! dorsal plus ventral thalamus +relationship: part_of UBERON:0002733 {source="FMA"} ! intralaminar nuclear group + +[Term] +id: UBERON:0001923 +name: central medial nucleus +def: "A small cell group in the interthalamic adhesion of the thalamus that occupy the midline region of the internal medullary lamina, between the left and right paracentral nuclei." [MP:0008929] +subset: pheno_slim +synonym: "central medial nucleus of thalamus" EXACT [] +synonym: "central medial nucleus of the thalamus" RELATED [NeuroNames:321] +synonym: "central medial nucleus thalamus (rioch 1928)" EXACT [BIRNLEX:971] +synonym: "central medial thalamic nucleus" EXACT [] +synonym: "centromedial thalamic nucleus" RELATED [BAMS:CM] +synonym: "CM" BROAD ABBREVIATION [BIRNLEX:971, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus centralis medialis" EXACT [BIRNLEX:971] +synonym: "nucleus centralis medialis thalami" EXACT [BIRNLEX:971] +xref: BAMS:CM +xref: BAMS:CMN +xref: BAMS:GMN +xref: BIRNLEX:971 +xref: BM:Die-CeM +xref: BTO:0003753 +xref: DHBA:10445 +xref: EMAPA:35206 +xref: FMA:62171 +xref: HBA:4438 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=321 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=321 {source="BIRNLEX:971"} +xref: http://linkedlifedata.com/resource/umls/id/C0920328 +xref: http://www.snomedbrowser.com/Codes/Details/279161000 +xref: MA:0000872 +xref: MBA:599 +xref: PBA:128012616 +xref: UMLS:C0920328 {source="BIRNLEX:971"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: contributes_to_morphology_of UBERON:0001897 ! dorsal plus ventral thalamus +relationship: part_of UBERON:0002965 {source="NIFSTD"} ! rostral intralaminar nuclear group + +[Term] +id: UBERON:0001924 +name: paracentral nucleus +def: "one of the intralaminar nuclei of the thalamus, located medial to the central lateral nucleus." [MP:0008928] +subset: pheno_slim +synonym: "nucleus centralis lateralis superior (kusama)" EXACT [BIRNLEX:981] +synonym: "nucleus paracentral" EXACT [BIRNLEX:981] +synonym: "nucleus paracentral thalami" EXACT [BIRNLEX:981] +synonym: "nucleus paracentralis" RELATED LATIN [NeuroNames:322] +synonym: "nucleus paracentralis thalami" EXACT LATIN [FMA:62172, FMA:TA] +synonym: "paracentral nucleus of thalamus" EXACT [] +synonym: "paracentral nucleus of the thalamus" RELATED [NeuroNames:322] +synonym: "paracentral nucleus thalamus (gurdjian 1927)" EXACT [BIRNLEX:981] +synonym: "paracentral thalamic nucleus" EXACT [] +synonym: "PC" BROAD ABBREVIATION [BIRNLEX:981, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:PAC +xref: BAMS:PC +xref: BAMS:PCM +xref: BAMS:PCN +xref: BIRNLEX:981 +xref: BM:Die-Th-Pc +xref: DHBA:10446 +xref: DMBA:16416 +xref: EMAPA:35658 +xref: EV:0100204 +xref: FMA:62172 +xref: HBA:4435 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=322 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=322 {source="BIRNLEX:981"} +xref: http://linkedlifedata.com/resource/umls/id/C0228354 +xref: http://www.snomedbrowser.com/Codes/Details/279152000 +xref: MA:0000873 +xref: MBA:907 +xref: UMLS:C0228354 {source="BIRNLEX:981"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: contributes_to_morphology_of UBERON:0001897 ! dorsal plus ventral thalamus +relationship: part_of UBERON:0002965 {source="NIFSTD"} ! rostral intralaminar nuclear group + +[Term] +id: UBERON:0001925 +name: ventral lateral nucleus of thalamus +def: "The ventral lateral nucleus (VL) is a nucleus of the thalamus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Ventral_lateral_nucleus] +subset: uberon_slim +subset: vertebrate_core +synonym: "lateral ventral nucleus of thalamus" EXACT [FMA:62186] +synonym: "lateral-ventral nuclei of thalamus" RELATED [BAMS:VTh] +synonym: "nuclei ventrales laterales thalami" EXACT [FMA:TA] +synonym: "nuclei ventrales laterales thalami" RELATED [BTO:0002463] +synonym: "nucleus ventralis intermedius" EXACT [BIRNLEX:1237] +synonym: "nucleus ventralis lateralis" EXACT [BIRNLEX:1237] +synonym: "nucleus ventralis lateralis thalami" EXACT [BIRNLEX:1237] +synonym: "nucleus ventralis thalami lateralis" EXACT [BIRNLEX:1237] +synonym: "nucleus ventrolateralis thalami" EXACT [BIRNLEX:1237] +synonym: "ventral lateral complex of thalamus" EXACT [FMA:62186] +synonym: "ventral lateral nuclei of thalamus" RELATED [BTO:0002463] +synonym: "ventral lateral nucleus" EXACT [FMA:62186] +synonym: "ventral lateral nucleus of thalamus" EXACT [FMA:62186] +synonym: "ventral lateral thalamic nuclei" EXACT [FMA:62186] +synonym: "ventral lateral thalamic nucleus" EXACT [BIRNLEX:1237] +synonym: "ventrolateral complex" RELATED [BAMS:VL] +synonym: "ventrolateral thalamic nucleus" EXACT [FMA:62186] +synonym: "VL" BROAD ABBREVIATION [BIRNLEX:1237, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:VL +xref: BAMS:VTh +xref: BIRNLEX:1237 +xref: BM:Die-Th-VL +xref: BTO:0002463 +xref: DHBA:10420 +xref: DMBA:16428 +xref: EMAPA:36654 +xref: FMA:62186 +xref: HBA:12925 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=337 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=337 {source="BIRNLEX:1237"} +xref: http://en.wikipedia.org/wiki/Ventral_lateral_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0228339 +xref: http://www.snomedbrowser.com/Codes/Details/279146001 +xref: NCIT:C33862 +xref: TAO:0000306 +xref: UMLS:C0228339 {source="BIRNLEX:1237"} +xref: UMLS:C0228339 {source="ncithesaurus:Ventrolateral_Nucleus_of_the_Thalamus"} +xref: ZFA:0000306 +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +is_a: UBERON:0015234 ! nucleus of ventral thalamus +relationship: part_of UBERON:0002776 {source="FMA"} ! ventral nuclear group + +[Term] +id: UBERON:0001926 +name: lateral geniculate body +def: "the group of neurons that serve as the primary processor of visual information received from the retina via the optic tract and send processed information to the visual cortex of the occipital lobe" [ISBN:0-683-40008-8, MP:0004165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "corpus geniculatum externum" RELATED [BTO:0004367] +synonym: "corpus geniculatum laterale" RELATED [BTO:0004367] +synonym: "corpus geniculatum laterales" EXACT [BIRNLEX:1662] +synonym: "corpus geniculatus lateralis" RELATED LATIN [NeuroNames:352] +synonym: "external geniculate body" RELATED [http://en.wikipedia.org/wiki/Lateral_geniculate_nucleus] +synonym: "lateral geniculate complex" EXACT [] +synonym: "lateral geniculate nucleus" EXACT [] +synonym: "LGB" RELATED ABBREVIATION [BTO:0004367] +synonym: "LGN" BROAD ABBREVIATION [BIRNLEX:1662, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus corporis geniculati lateralis" RELATED [BAMS:LG] +synonym: "nucleus corporis geniculati lateralis" RELATED LATIN [NeuroNames:352] +synonym: "nucleus geniculatus lateralis" EXACT [BIRNLEX:1662] +xref: BAMS:C.gl. +xref: BAMS:LG +xref: BIRNLEX:1662 +xref: BTO:0004366 +xref: BTO:0004367 +xref: DHBA:10429 +xref: EFO:0001988 +xref: EMAPA:35478 +xref: EV:0100219 +xref: FMA:62209 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=352 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=352 {source="BIRNLEX:1662"} +xref: http://en.wikipedia.org/wiki/Lateral_geniculate_body +xref: http://linkedlifedata.com/resource/umls/id/C0086526 +xref: http://www.snomedbrowser.com/Codes/Details/362377006 +xref: MA:0000869 +xref: NCIT:C32556 +xref: PBA:128013070 +xref: UMLS:C0086526 {source="BIRNLEX:1662"} +xref: UMLS:C0086526 {source="ncithesaurus:External_Geniculate_Body"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +disjoint_from: UBERON:0001927 {source="lexical"} ! medial geniculate body +relationship: contributes_to_morphology_of UBERON:0001897 ! dorsal plus ventral thalamus +relationship: part_of UBERON:0002704 {source="FMA"} ! metathalamus +relationship: present_in_taxon NCBITaxon:117569 {source="Ariens, p. 1192"} + +[Term] +id: UBERON:0001927 +name: medial geniculate body +def: "Nuclear complex of the thalamus situated on the caudal, subpial aspect of the thalamus (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 622)." [BIRNLEX:1670] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "corpus geniculatum mediale" EXACT [BIRNLEX:1670] +synonym: "corpus geniculatus medialis" RELATED LATIN [NeuroNames:355] +synonym: "internal geniculate body" RELATED [ncithesaurus:Internal_Geniculate_Body] +synonym: "medial geniculate complex" EXACT [] +synonym: "medial geniculate complex of dorsal thalamus" RELATED [BAMS:MG] +synonym: "medial geniculate nuclei" EXACT [] +synonym: "medial geniculate nucleus" EXACT [] +synonym: "MGB" RELATED [BTO:0002674] +synonym: "MGN" BROAD ABBREVIATION [BIRNLEX:1670, NIFSTD:NeuroNames_abbrevSource] +synonym: "nuclei corporis geniculati medialis" EXACT LATIN [FMA:62211, FMA:TA] +synonym: "nucleus corporis geniculati medialis" RELATED LATIN [NeuroNames:355] +synonym: "nucleus geniculatus medialis" RELATED LATIN [NeuroNames:355] +xref: BAMS:C.gm. +xref: BAMS:MG +xref: BIRNLEX:1670 +xref: BM:Die-Th-MG +xref: BTO:0002674 +xref: DHBA:10434 +xref: DMBA:16462 +xref: EFO:0001968 +xref: EMAPA:35546 +xref: EV:0100218 +xref: FMA:62211 +xref: HBA:12926 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=355 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=355 {source="BIRNLEX:1670"} +xref: http://en.wikipedia.org/wiki/Medial_geniculate_body +xref: http://linkedlifedata.com/resource/umls/id/C0086596 +xref: http://www.snomedbrowser.com/Codes/Details/362378001 +xref: MA:0000870 +xref: MBA:475 +xref: NCIT:C32843 +xref: UMLS:C0086596 {source="BIRNLEX:1670"} +xref: UMLS:C0086596 {source="ncithesaurus:Internal_Geniculate_Body"} +is_a: UBERON:0007245 ! nuclear complex of neuraxis +is_a: UBERON:0019269 ! gray matter of diencephalon +relationship: contributes_to_morphology_of UBERON:0001897 ! dorsal plus ventral thalamus +relationship: part_of UBERON:0002105 {source="NIFSTD"} ! vestibulo-auditory system +relationship: part_of UBERON:0002704 {source="FMA"} ! metathalamus + +[Term] +id: UBERON:0001928 +name: preoptic area +def: "Area of the forebrain between the anterior commissure and optic chiasm." [http://en.wikipedia.org/wiki/Preoptic_area, ZFIN:curator] +subset: efo_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "area hypothalamica rostralis" RELATED [BTO:0001796] +synonym: "area praeoptica" RELATED [] +synonym: "area preoptica" RELATED LATIN [http://en.wikipedia.org/wiki/Preoptic_area] +synonym: "nuclei preoptici" RELATED LATIN [NeuroNames:377] +synonym: "POA" BROAD ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23375746] +synonym: "POA" BROAD ABBREVIATION [BIRNLEX:1706, NIFSTD:NeuroNames_abbrevSource] +synonym: "preoptic hypothalamic area" RELATED [BTO:0001796] +synonym: "preoptic hypothalamic region" RELATED [BTO:0001796] +synonym: "preoptic nuclei" EXACT [] +synonym: "preoptic region" RELATED [] +synonym: "preoptic region of hypothalamus" EXACT [] +synonym: "regio hypothalamica anterior" RELATED [BTO:0001796] +xref: BAMS:POA +xref: BIRNLEX:1706 +xref: BM:Die-Hy-POA +xref: BTO:0001796 +xref: CALOHA:TS-0822 +xref: DMBA:15577 +xref: EFO:0002523 +xref: EMAPA:36655 +xref: FMA:62313 +xref: GAID:644 +xref: HBA:4541 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=377 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=377 {source="BIRNLEX:1706"} +xref: http://linkedlifedata.com/resource/umls/id/C0033063 +xref: http://linkedlifedata.com/resource/umls/id/C1284641 +xref: http://www.snomedbrowser.com/Codes/Details/362382004 +xref: MESH:A08.186.211.730.385.357.342.450 +xref: Preoptic:area +xref: TAO:0000470 +xref: UMLS:C0033063 {source="BIRNLEX:1706"} +xref: UMLS:C1284641 {source="BIRNLEX:1706"} +xref: ZFA:0000470 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0001894 ! diencephalon +relationship: present_in_taxon NCBITaxon:7742 + +[Term] +id: UBERON:0001929 +name: supraoptic nucleus +def: "The supraoptic nucleus (SON) is a nucleus of magnocellular neurosecretory cells in the hypothalamus of the mammalian brain. The nucleus is situated at the base of the brain, adjacent to the optic chiasm. [WP,unvetted]." [http://en.wikipedia.org/wiki/Supraoptic_nucleus, https://sourceforge.net/tracker/?func=detail&aid=3474225&group_id=76834&atid=1205376] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "nucleus supraopticus" EXACT [BTO:0002697] +synonym: "nucleus supraopticus" RELATED LATIN [http://en.wikipedia.org/wiki/Supraoptic_nucleus] +synonym: "nucleus supraopticus hypothalami" RELATED LATIN [NeuroNames:385] +synonym: "nucleus tangentialis (Riley)" RELATED LATIN [NeuroNames:385] +synonym: "SO" BROAD ABBREVIATION [BIRNLEX:1411, NIFSTD:NeuroNames_abbrevSource] +synonym: "supra-optic nucleus" EXACT [] +synonym: "supraoptic nucleus of hypothalamus" EXACT [] +synonym: "supraoptic nucleus proper (Lenhossek)" RELATED [NeuroNames:385] +synonym: "supraoptic nucleus, general" RELATED [NeuroNames:385] +synonym: "supraoptic nucleus, proper" RELATED [BAMS:SO] +xref: BAMS:SO +xref: BAMS:SON +xref: BIRNLEX:1411 +xref: BM:Die-Hy-SON +xref: BTO:0002697 +xref: DHBA:10481 +xref: DMBA:15633 +xref: EFO:0002476 +xref: EMAPA:35843 +xref: EV:0100227 +xref: FMA:62317 +xref: GAID:646 +xref: HBA:12907 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=385 {source="BIRNLEX:1411"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=385 +xref: http://linkedlifedata.com/resource/umls/id/C0038869 +xref: http://www.snomedbrowser.com/Codes/Details/369130007 +xref: MA:0000849 +xref: MBA:390 +xref: MESH:A08.186.211.730.385.357.342.650 +xref: Supraoptic:nucleus +xref: UMLS:C0038869 {source="BIRNLEX:1411"} +is_a: UBERON:0006568 ! hypothalamic nucleus +relationship: contributes_to_morphology_of UBERON:0001898 ! hypothalamus +relationship: part_of UBERON:0002271 {source="ABA", source="MA"} ! periventricular zone of hypothalamus +relationship: part_of UBERON:0002550 {source="FMA"} ! anterior hypothalamic region + +[Term] +id: UBERON:0001930 +name: paraventricular nucleus of hypothalamus +def: "Nucleus in the anterior part of the hypothalamus. (MSH) * one of the magnocellular hypothalamic nuclei, an elongated plate of large, deeply staining cells located close to the third ventricle in the anterior hypothalamic area; major source of oxytocin and to a lesser extent, of antidiuretic hormone, neurohormones, which are carried to the neurohypophysis along the paraventriculohypophysial tract. (CSP)" [BIRNLEX:1407] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "filiform nucleus" EXACT [] +synonym: "nuclei paraventriculares" RELATED LATIN [NeuroNames:387] +synonym: "nuclei paraventricularis hypothalami" RELATED LATIN [http://en.wikipedia.org/wiki/Paraventricular_nucleus_of_hypothalamus] +synonym: "nucleus filiformis" RELATED LATIN [NeuroNames:387] +synonym: "nucleus hypothalami filiformis" RELATED LATIN [NeuroNames:387] +synonym: "nucleus hypothalami paraventricularis" RELATED LATIN [NeuroNames:387] +synonym: "nucleus paraventricularis hypothalami" RELATED [BTO:0002476] +synonym: "Pa" BROAD ABBREVIATION [BIRNLEX:1407, NIFSTD:NeuroNames_abbrevSource] +synonym: "paraventricular hypothalamic nucleus" EXACT [] +synonym: "paraventricular nucleus" EXACT [] +synonym: "paraventricular nucleus hypothalamus (Malone)" RELATED [NeuroNames:387] +synonym: "paraventricular nucleus of the hypothalamus" RELATED [NeuroNames:387] +synonym: "parvocellular hypothalamic nucleus" RELATED [BAMS:PVH] +synonym: "subcommissural nucleus (Ziehen)" RELATED [NeuroNames:387] +xref: BAMS:Pa +xref: BAMS:PAH +xref: BAMS:PVH +xref: BIRNLEX:1407 +xref: BM:Die-Hy-PAH +xref: BTO:0002476 +xref: DHBA:10476 +xref: EFO:0002469 +xref: EMAPA:35665 +xref: EV:0100229 +xref: FMA:62320 +xref: GAID:643 +xref: HBA:12905 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=387 {source="BIRNLEX:1407"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=387 +xref: http://en.wikipedia.org/wiki/Paraventricular_nucleus_of_hypothalamus +xref: http://linkedlifedata.com/resource/umls/id/C0030532 +xref: http://www.snomedbrowser.com/Codes/Details/369131006 +xref: MA:0000848 +xref: MBA:38 +xref: MESH:A08.186.211.730.385.357.342.400 +xref: UMLS:C0030532 {source="BIRNLEX:1407"} +is_a: UBERON:0006568 ! hypothalamic nucleus +relationship: contributes_to_morphology_of UBERON:0001898 ! hypothalamus +relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus + +[Term] +id: UBERON:0001931 +name: lateral preoptic nucleus +def: "The lateral preoptic nucleus is lateral to the medial preoptic nucleus. It also mediates non-REM sleep onset.[WP,unvetted]." [http://en.wikipedia.org/wiki/Preoptic_area#Lateral_preoptic_nucleus] +subset: uberon_slim +synonym: "area praeoptica lateralis" RELATED LATIN [NeuroNames:381] +synonym: "area preoptica lateralis" RELATED LATIN [NeuroNames:381] +synonym: "lateral preoptic area" EXACT [] +synonym: "lateral preoptic hypothalamic nucleus" EXACT [] +synonym: "LPO" BROAD ABBREVIATION [BIRNLEX:1722, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus praeopticus lateralis" RELATED LATIN [NeuroNames:381] +synonym: "nucleus preopticus lateralis" RELATED LATIN [NeuroNames:381] +xref: BAMS:LPO +xref: BIRNLEX:1722 +xref: BM:Die-Hy-LPO +xref: DHBA:10471 +xref: EMAPA:35483 +xref: FMA:62326 +xref: HBA:4552 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=381 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=381 {source="BIRNLEX:1722"} +xref: http://linkedlifedata.com/resource/umls/id/C0175312 +xref: http://linkedlifedata.com/resource/umls/id/C1289556 +xref: http://www.snomedbrowser.com/Codes/Details/369129002 +xref: Lateral_preoptic_nucleus +xref: MA:0000835 +xref: MBA:226 +xref: UMLS:C0175312 {source="BIRNLEX:1722"} +xref: UMLS:C1289556 {source="BIRNLEX:1722"} +is_a: UBERON:0006568 ! hypothalamic nucleus +disjoint_from: UBERON:0002035 {source="lexical"} ! medial preoptic nucleus +disjoint_from: UBERON:0007769 {source="lexical"} ! medial preoptic region +relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus + +[Term] +id: UBERON:0001932 +name: arcuate nucleus of hypothalamus +def: "The arcuate nucleus (or infundibular nucleus) is an aggregation of neurons in the mediobasal hypothalamus, adjacent to the third ventricle and the median eminence. The arcuate nucleus includes several important populations of neurons, including: Neuroendocrine neurons, Centrally-projecting neurons and Others. [WP,unvetted]." [http://en.wikipedia.org/wiki/Arcuate_nucleus] +subset: uberon_slim +synonym: "ArcH" BROAD ABBREVIATION [BIRNLEX:1638, NIFSTD:NeuroNames_abbrevSource] +synonym: "arcuate hypothalamic nucleus" EXACT [] +synonym: "arcuate nucleus" EXACT [] +synonym: "arcuate nucleus of the hypothalamus" RELATED [NeuroNames:395] +synonym: "arcuate nucleus-2" EXACT [] +synonym: "arcuate periventricular nucleus" EXACT [] +synonym: "infundibular hypothalamic nucleus" EXACT [] +synonym: "infundibular nucleus" EXACT [] +synonym: "infundibular periventricular nucleus" EXACT [] +synonym: "nucleus arcuatus" EXACT LATIN [FMA:62329, FMA:TA] +synonym: "nucleus arcuatus (hypothalamus)" RELATED LATIN [NeuroNames:395] +synonym: "nucleus arcuatus hypothalami" RELATED LATIN [http://en.wikipedia.org/wiki/Arcuate_nucleus] +synonym: "nucleus infundibularis" RELATED [BTO:0002473] +synonym: "nucleus infundibularis hypothalami" RELATED LATIN [NeuroNames:395] +synonym: "nucleus semilunaris" RELATED [BTO:0002473] +xref: Arcuate:nucleus +xref: BAMS:Arc +xref: BAMS:ArcH +xref: BAMS:ARH +xref: BIRNLEX:1638 +xref: BM:HAr +xref: BTO:0002473 +xref: BTO:0005534 +xref: DHBA:10492 +xref: EMAPA:35142 +xref: EV:0100230 +xref: FMA:62329 +xref: GAID:647 +xref: HBA:12913 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=395 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=395 {source="BIRNLEX:1638"} +xref: http://linkedlifedata.com/resource/umls/id/C0003741 +xref: MA:0000847 +xref: MBA:223 +xref: MESH:A08.186.211.730.385.357.352.081 +xref: NCIT:C52711 +xref: UMLS:C0003741 {source="BIRNLEX:1638"} +xref: UMLS:C0003741 {source="ncithesaurus:Arcuate_Nucleus"} +is_a: UBERON:0006568 ! hypothalamic nucleus +relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus +relationship: part_of UBERON:0002555 {source="NIFSTD"} ! intermediate hypothalamic region + +[Term] +id: UBERON:0001933 +name: retrochiasmatic area +synonym: "area retrochiasmatica" RELATED LATIN [NeuroNames:396] +synonym: "nucleus supraopticus diffusus" RELATED LATIN [NeuroNames:396] +synonym: "RCh" BROAD ABBREVIATION [BIRNLEX:1569, NIFSTD:NeuroNames_abbrevSource] +synonym: "retrochiasmatic area" RELATED [NeuroNames:396] +synonym: "retrochiasmatic hypothalamic area" RELATED [NeuroNames:396] +synonym: "retrochiasmatic region" EXACT [] +synonym: "supraoptic nucleus, tuberal part" RELATED [NeuroNames:396] +xref: BAMS:RCH +xref: BAMS:RCh +xref: BIRNLEX:1569 +xref: EMAPA:37732 {source="MA:th"} +xref: FMA:62330 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=396 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=396 {source="BIRNLEX:1569"} +xref: http://linkedlifedata.com/resource/umls/id/C0262326 +xref: MA:0000841 +xref: MBA:173 +xref: UMLS:C0262326 {source="BIRNLEX:1569"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0002272 ! medial zone of hypothalamus +relationship: part_of UBERON:0002555 {source="FMA", source="NIFSTD"} ! intermediate hypothalamic region + +[Term] +id: UBERON:0001934 +name: dorsomedial nucleus of hypothalamus +def: "The Dorsomedial hypothalamic nucleus is a nucleus of the hypothalamus. It is involved in feeding, drinking, and body weight regulation. [WP,unvetted]." [http://en.wikipedia.org/wiki/Dorsomedial_hypothalamic_nucleus] +subset: uberon_slim +synonym: "DMH" BROAD ABBREVIATION [BIRNLEX:1558, NIFSTD:NeuroNames_abbrevSource] +synonym: "dorsomedial hypothalamic nucleus" EXACT [] +synonym: "dorsomedial nucleus" BROAD [] +synonym: "dorsomedial nucleus hypothalamus" RELATED [NeuroNames:397] +synonym: "dorsomedial nucleus of dorsal hypothalamus" EXACT [] +synonym: "dorsomedial nucleus of intermediate hypothalamus" EXACT [] +synonym: "dorsomedial nucleus of the hypothalamus" RELATED [NeuroNames:397] +synonym: "nucleus dorsomedialis hypothalami" RELATED LATIN [NeuroNames:397] +synonym: "nucleus dorsomedialis hypothalamicae intermediae" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsomedial_hypothalamic_nucleus] +synonym: "nucleus dorsomedialis hypothalamicae intermediae" RELATED [BTO:0002474] +synonym: "nucleus hypothalamicus dorsomedialis" RELATED LATIN [NeuroNames:397] +xref: BAMS:DM +xref: BAMS:DMH +xref: BIRNLEX:1558 +xref: BM:Die-Hy-DMH +xref: BTO:0002474 +xref: DHBA:10485 +xref: EMAPA:35297 +xref: EV:0100232 +xref: FMA:62331 +xref: GAID:648 +xref: HBA:12914 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=397 {source="BIRNLEX:1558"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=397 +xref: http://en.wikipedia.org/wiki/Dorsomedial_hypothalamic_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0013055 +xref: http://www.snomedbrowser.com/Codes/Details/369134003 +xref: MA:0000838 +xref: MBA:830 +xref: MESH:A08.186.211.730.385.357.352.270 +xref: UMLS:C0013055 {source="BIRNLEX:1558"} +is_a: UBERON:0006568 {source="FMA"} ! hypothalamic nucleus +relationship: part_of UBERON:0002272 {source="MA"} ! medial zone of hypothalamus +relationship: part_of UBERON:0002555 {source="FMA"} ! intermediate hypothalamic region + +[Term] +id: UBERON:0001935 +name: ventromedial nucleus of hypothalamus +def: "The ventromedial nucleus (sometimes referred to as the ventromedial hypothalamus) is a nucleus of the hypothalamus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Ventromedial_hypothalamic_nucleus] +comment: part of tuberal area in MA +subset: uberon_slim +synonym: "nucleus hypothalamicus ventromedialis" RELATED LATIN [NeuroNames:398] +synonym: "nucleus ventromedialis hypothalami" RELATED [BTO:0002472] +synonym: "tuberal nucleus (Ganser)" RELATED [NeuroNames:398] +synonym: "ventrolateral hypothalamic nucleus" RELATED [BTO:0002472] +synonym: "ventrolateral nucleus of hypothalamus" RELATED [BTO:0002472] +synonym: "ventromedial hypothalamic nucleus" EXACT [] +synonym: "ventromedial nucleus hypothalamus" RELATED [NeuroNames:398] +synonym: "ventromedial nucleus of hypothalamus." RELATED [BTO:0002472] +synonym: "ventromedial nucleus of the hypothalamus" RELATED [NeuroNames:398] +synonym: "VMH" BROAD ABBREVIATION [BIRNLEX:1572, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:VMH +xref: BIRNLEX:1572 +xref: BM:VMH +xref: BTO:0002472 +xref: DHBA:10488 +xref: DMBA:15675 +xref: EMAPA:35916 +xref: EV:0100233 +xref: FMA:62332 +xref: GAID:650 +xref: HBA:12919 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=398 {source="BIRNLEX:1572"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=398 +xref: http://en.wikipedia.org/wiki/Ventromedial_hypothalamic_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0042518 +xref: http://www.snomedbrowser.com/Codes/Details/369124007 +xref: MA:0000845 +xref: MBA:693 +xref: MESH:A08.186.211.730.385.357.352.953 +xref: UMLS:C0042518 {source="BIRNLEX:1572"} +is_a: UBERON:0006568 {source="FMA"} ! hypothalamic nucleus +relationship: part_of UBERON:0002555 {source="FMA"} ! intermediate hypothalamic region + +[Term] +id: UBERON:0001936 +name: tuberomammillary nucleus +def: "The tuberomammillary nucleus is a subnucleus of the posterior third of the hypothalamus. It consists of, largely, histaminergic and is involved with the control of arousal, sleep and circadian rhythm. Axons of the tuberomammillary nucleus project primarily to the cerebral cortex, thalamus, basal ganglia, basal forebrain, and hypothalamus. The projections to the cerebral cortex directly increase cortical activation and arousal, and projections to acetylcholinergic neurons of the basal forebrain and dorsal pons do so indirectly, by increasing the release of acetylcholine in the cerebral cortex. [WP,unvetted]." [http://en.wikipedia.org/wiki/Tuberomammillary_nucleus] +subset: uberon_slim +synonym: "caudal magnocellular nucleus" EXACT [BIRNLEX:1271] +synonym: "mammilloinfundibular nucleus" EXACT [FMA:62335] +synonym: "mammiloinfundibular nucleus" EXACT [BIRNLEX:1271] +synonym: "nucleus tuberomamillaris" RELATED LATIN [NeuroNames:427] +synonym: "nucleus tuberomamillaris hypothalami" RELATED LATIN [NeuroNames:427] +synonym: "TM" BROAD ABBREVIATION [BIRNLEX:1271, NIFSTD:NeuroNames_abbrevSource] +synonym: "TM" RELATED ABBREVIATION [BIRNLEX:1271] +synonym: "tubero-mamillary area" RELATED [NeuroNames:427] +synonym: "tuberomamillary nucleus" RELATED DUBIOUS [EV:0100237] +synonym: "tuberomammillary hypothalamic nucleus" EXACT [BIRNLEX:1271] +synonym: "tuberomammillary nucleus" EXACT [BIRNLEX:1271] +synonym: "tuberomammillary nucleus, ventral part" RELATED [NeuroNames:427] +synonym: "ventral tuberomammillary nucleus" RELATED [NeuroNames:427] +xref: BAMS:TM +xref: BIRNLEX:1271 +xref: DHBA:10496 +xref: EMAPA:35889 +xref: EV:0100237 +xref: FMA:62335 +xref: HBA:12912 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=427 {source="BIRNLEX:1271"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=427 +xref: http://linkedlifedata.com/resource/umls/id/C0228377 +xref: http://linkedlifedata.com/resource/umls/id/C1289549 +xref: http://www.snomedbrowser.com/Codes/Details/369122006 +xref: MA:0000853 +xref: MBA:557 +xref: Tuberomammillary:nucleus +xref: UMLS:C0228377 {source="BIRNLEX:1271"} +xref: UMLS:C1289549 {source="BIRNLEX:1271"} +is_a: UBERON:0006568 ! hypothalamic nucleus +relationship: part_of UBERON:0002206 {source="MA"} ! mammillary body +relationship: part_of UBERON:0002430 {source="FMA"} ! lateral hypothalamic area + +[Term] +id: UBERON:0001937 +name: lateral hypothalamic nucleus +def: "The lateral hypothalamus or lateral hypothalamic area is a part of the hypothalamus. It is concerned with hunger. Damage to this area can cause reduced food intake. Stimulating the lateral hypothalamus causes a desire to eat, while stimulating the ventromedial hypothalamus causes a desire to stop eating." [http://en.wikipedia.org/wiki/Lateral_hypothalamus] +subset: uberon_slim +subset: vertebrate_core +synonym: "areas of Economo" RELATED [NeuroNames:1347] +synonym: "economo's areas" RELATED [NeuroNames:1347] +synonym: "lateral hypothalamic nuclei" RELATED PLURAL [ZFA:0000227] +synonym: "LHy" BROAD ABBREVIATION [BIRNLEX:1199, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus hypothalamicus lateralis" EXACT LATIN [FMA:62337, FMA:TA] +xref: BAMS:LHy +xref: BIRNLEX:1199 +xref: EV:0100234 +xref: FMA:62337 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1347 {source="BIRNLEX:1199"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1347 +xref: http://linkedlifedata.com/resource/umls/id/C0086527 +xref: http://www.snomedbrowser.com/Codes/Details/360452004 +xref: Lateral:hypothalamus +xref: TAO:0000227 +xref: UMLS:C0086527 {source="BIRNLEX:1199"} +xref: ZFA:0000227 +is_a: UBERON:0006568 ! hypothalamic nucleus +relationship: part_of UBERON:0002430 ! lateral hypothalamic area + +[Term] +id: UBERON:0001938 +name: lateral mammillary nucleus +synonym: "lateral mamillary nucleus" RELATED [NeuroNames:413] +synonym: "lateral mammillary hypothalamic nucleus" EXACT [] +synonym: "lateral mammillary nucleus (Gudden)" RELATED [NeuroNames:413] +synonym: "lateral nucleus of mammillary body" EXACT [] +synonym: "LM" BROAD ABBREVIATION [BIRNLEX:1460, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus corporis mamillaris lateralis" RELATED LATIN [NeuroNames:413] +synonym: "nucleus intercalatus (Olszewski)" RELATED LATIN [NeuroNames:413] +synonym: "nucleus lateralis corpus mamillaris" RELATED LATIN [NeuroNames:413] +synonym: "nucleus mammillaris lateralis" EXACT LATIN [FMA:62341, FMA:TA] +xref: BAMS:LM +xref: BIRNLEX:1460 +xref: BTO:0004009 +xref: DHBA:10502 +xref: DMBA:15734 +xref: EMAPA:35481 +xref: EV:0100239 +xref: FMA:62341 +xref: HBA:4675 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=413 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=413 {source="BIRNLEX:1460"} +xref: http://linkedlifedata.com/resource/umls/id/C0152357 +xref: http://linkedlifedata.com/resource/umls/id/C1289570 +xref: http://www.snomedbrowser.com/Codes/Details/369143007 +xref: MA:0000850 +xref: MBA:210 +xref: UMLS:C0152357 {source="BIRNLEX:1460"} +xref: UMLS:C1289570 {source="BIRNLEX:1460"} +is_a: UBERON:0006568 ! hypothalamic nucleus +disjoint_from: UBERON:0001939 {source="lexical"} ! medial mammillary nucleus +relationship: part_of UBERON:0002206 ! mammillary body + +[Term] +id: UBERON:0001939 +name: medial mammillary nucleus +synonym: "internal mammillary nucleus" EXACT [] +synonym: "medial mamillary nucleus" RELATED [BAMS:MM] +synonym: "medial mammillary nucleus, body" RELATED [BAMS:MM] +synonym: "medial nucleus of mammillary body" EXACT [] +synonym: "MM" BROAD ABBREVIATION [BIRNLEX:1299, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus mammillaris medialis" EXACT LATIN [FMA:62342, FMA:TA] +synonym: "preoptic division" RELATED [NeuroNames:376] +xref: BAMS:MM +xref: BAMS:MMg +xref: BIRNLEX:1299 +xref: BTO:0004008 +xref: DHBA:10499 +xref: DMBA:15729 +xref: EMAPA:35548 +xref: EV:0100238 +xref: FMA:62342 +xref: HBA:4672 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=376 {source="BIRNLEX:1299"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=376 +xref: http://linkedlifedata.com/resource/umls/id/C0175329 +xref: http://linkedlifedata.com/resource/umls/id/C1289568 +xref: http://www.snomedbrowser.com/Codes/Details/369141009 +xref: MA:0000851 +xref: MBA:491 +xref: UMLS:C0175329 {source="BIRNLEX:1299"} +xref: UMLS:C1289568 {source="BIRNLEX:1299"} +is_a: UBERON:0006568 ! hypothalamic nucleus +relationship: part_of UBERON:0002206 ! mammillary body + +[Term] +id: UBERON:0001940 +name: supramammillary nucleus +synonym: "nuclei premamillaris" RELATED LATIN [NeuroNames:418] +synonym: "nucleus premamillaris hypothalami" RELATED LATIN [NeuroNames:418] +synonym: "premamillary nucleus" RELATED [NeuroNames:418] +synonym: "SuM" BROAD ABBREVIATION [BIRNLEX:1479, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:SUM +xref: BAMS:SuM +xref: BIRNLEX:1479 +xref: DHBA:10497 +xref: EMAPA:35842 +xref: FMA:62347 +xref: HBA:12911 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=418 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=418 {source="BIRNLEX:1479"} +xref: http://linkedlifedata.com/resource/umls/id/C0228378 +xref: http://linkedlifedata.com/resource/umls/id/C1289571 +xref: http://www.snomedbrowser.com/Codes/Details/369144001 +xref: MA:0000852 +xref: MBA:525 +xref: UMLS:C0228378 {source="BIRNLEX:1479"} +xref: UMLS:C1289571 {source="BIRNLEX:1479"} +is_a: UBERON:0006568 ! hypothalamic nucleus +relationship: part_of UBERON:0002206 ! mammillary body + +[Term] +id: UBERON:0001941 +name: lateral habenular nucleus +synonym: "lateral habenula" EXACT [] +synonym: "lateral habenula (Nissl)" RELATED [NeuroNames:295] +synonym: "LHb" BROAD ABBREVIATION [BIRNLEX:1438, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus habenulae lateralis" EXACT [BIRNLEX:1438] +synonym: "nucleus habenularis lateralis" EXACT [BIRNLEX:1438] +synonym: "nucleus habenularis lateralis epithalami" EXACT [BIRNLEX:1438] +xref: BAMS:HL +xref: BAMS:LH +xref: BAMS:LHb +xref: BIRNLEX:1438 +xref: BM:Die-Epi-Hl +xref: BTO:0002699 +xref: DHBA:10453 +xref: EMAPA:35479 +xref: FMA:62372 +xref: HBA:4524 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=295 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=295 {source="BIRNLEX:1438"} +xref: http://linkedlifedata.com/resource/umls/id/C0228390 +xref: http://www.snomedbrowser.com/Codes/Details/361538005 +xref: MA:0000831 +xref: MBA:186 +xref: UMLS:C0228390 {source="BIRNLEX:1438"} +is_a: UBERON:0008993 ! habenular nucleus +disjoint_from: UBERON:0001942 {source="lexical"} ! medial habenular nucleus + +[Term] +id: UBERON:0001942 +name: medial habenular nucleus +def: "The habenular nuclei comprise a small group of nuclei that are part of the epithalamus of the diencephalon, situated at the posterior end of the thalamus, on its upper surface. The habenular nuclei are typically divided into: lateral habenular nucleus medial habenular nucleus The pineal gland is attached to the brain in this region. Nerve impulses from the habenular nuclei are transmitted to the septal nuclei via the stria medullaris, which is found on the medial surface of the thalamus." [http://en.wikipedia.org/wiki/Habenular_nuclei] +synonym: "ganglion intercrurale" RELATED LATIN [NeuroNames:294] +synonym: "ganglion interpedunculare" RELATED LATIN [NeuroNames:294] +synonym: "medial habenula" EXACT [] +synonym: "MHb" BROAD ABBREVIATION [BIRNLEX:1431, NIFSTD:NeuroNames_abbrevSource] +synonym: "nuclei habenulares" RELATED LATIN [NeuroNames:294] +synonym: "nucleus habenulae medialis" EXACT [BIRNLEX:1431] +synonym: "nucleus habenularis" RELATED LATIN [NeuroNames:294] +synonym: "nucleus habenularis medialis" EXACT [BIRNLEX:1431] +synonym: "nucleus habenularis medialis (Hassler)" EXACT [BIRNLEX:1431] +synonym: "nucleus habenularis medialis epithalami" EXACT [BIRNLEX:1431] +xref: BAMS:HM +xref: BAMS:MH +xref: BAMS:MHb +xref: BIRNLEX:1431 +xref: BM:Die-Epi-HM +xref: BTO:0003686 +xref: DHBA:10456 +xref: DMBA:16388 +xref: EMAPA:35547 +xref: FMA:62373 +xref: Habenular:nuclei +xref: HBA:4523 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=294 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=294 {source="BIRNLEX:1431"} +xref: http://linkedlifedata.com/resource/umls/id/C0228389 +xref: MA:0000832 +xref: MBA:483 +xref: UMLS:C0228389 {source="BIRNLEX:1431"} +is_a: UBERON:0008993 ! habenular nucleus + +[Term] +id: UBERON:0001943 +name: midbrain tegmentum +def: "Ventral part of the midbrain, separated from the hindbrain by the isthmus[ISBN:0471888893]. Subdivision of the midbrain lying anterior to the tectum and posterior to the substantia nigra and cerebral peduncle[FMA] The part of the midbrain extending from the substantia nigra to the cerebral aqueduct in a horizontal section of the midbrain. It forms the floor of the midbrain that surrounds the cerebral aqueduct[WP]." [FMA:FMA, http://en.wikipedia.org/wiki/Midbrain_tegmentum, ISBN:0471888893] +comment: 'tegmentum' is used generically for the ventral part of the brainstem (ISBN:0471888893). We use the label 'midbrain tegmentum' to denote the midbrain structure. In NIFSTD tegmentum is a composite structure and there is a separate class for midbrain tegmentum and pontine tegmentum +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "mesencephalic tegmentum" RELATED [VHOG:0001367] +synonym: "MTg" BROAD ABBREVIATION [BIRNLEX:1200, NIFSTD:NeuroNames_abbrevSource] +synonym: "tegmentum" BROAD [ISBN:0471888893] +synonym: "tegmentum mesencephali" EXACT LATIN [http://en.wikipedia.org/wiki/Midbrain_tegmentum] +synonym: "tegmentum mesencephalicum" RELATED LATIN [NeuroNames:491] +synonym: "tegmentum of midbrain" EXACT [] +xref: BAMS:MTg +xref: BIRNLEX:1200 +xref: BTO:0003388 +xref: DHBA:12195 +xref: EFO:0000921 +xref: EHDAA2:0004475 +xref: EMAPA:18215 +xref: FMA:62393 +xref: HBA:9002 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=491 {source="BIRNLEX:1200"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=491 +xref: http://linkedlifedata.com/resource/umls/id/C0039441 +xref: http://www.snomedbrowser.com/Codes/Details/362392007 +xref: MA:0000212 +xref: MAT:0000452 +xref: Midbrain:tegmentum +xref: TAO:0000160 +xref: UMLS:C0039441 {source="BIRNLEX:1200"} +xref: VHOG:0001367 +xref: XAO:0004271 +xref: ZFA:0000160 +is_a: UBERON:0002616 ! regional part of brain +relationship: develops_from UBERON:0010285 {source="ZFA"} ! midbrain basal plate +relationship: part_of UBERON:0001891 ! midbrain +relationship: part_of UBERON:0002298 ! brainstem + +[Term] +id: UBERON:0001944 +name: pretectal region +def: "Nuclear complex between dorsal thalamus and optic tectum whose nuclei receive afferents primarily from the retina and the optic tectum and are involved in modulating motor behavior in response to visual input." [https://github.com/obophenotype/uberon/issues/361, ISBN:0471888893] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "area praetectalis" RELATED LATIN [NeuroNames:467] +synonym: "area pretectalis" EXACT LATIN [FMA:62402, FMA:TA] +synonym: "area pretectalis" EXACT LATIN [] +synonym: "nuclei pretectales" EXACT LATIN [FMA:62402, FMA:TA] +synonym: "nucleus praetectalis" RELATED LATIN [NeuroNames:467] +synonym: "praetectum" RELATED LATIN [NeuroNames:467] +synonym: "pretectal area" EXACT [] +synonym: "pretectal nuclei" EXACT [] +synonym: "pretectum" EXACT [] +synonym: "regio pretectalis" RELATED LATIN [NeuroNames:467] +xref: BAMS:PRT +xref: BAMS:PTc +xref: BAMS:PTec +xref: BIRNLEX:703 +xref: BM:MB-Tec-PT +xref: DHBA:12181 +xref: DMBA:16510 +xref: EMAPA:32778 +xref: FMA:62402 +xref: HBA:9079 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=467 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=467 {source="BIRNLEX:703"} +xref: http://en.wikipedia.org/wiki/Pretectum +xref: http://linkedlifedata.com/resource/umls/id/C0175354 +xref: http://www.snomedbrowser.com/Codes/Details/416333003 +xref: MA:0001062 +xref: MBA:1100 +xref: NLX:59721 +xref: Pretectal:area +xref: TAO:0000418 +xref: UMLS:C0175354 {source="BIRNLEX:703"} +xref: XAO:0004303 +xref: ZFA:0000418 +is_a: UBERON:0003528 ! brain gray matter +is_a: UBERON:0007245 {source="cjm"} ! nuclear complex of neuraxis +relationship: adjacent_to UBERON:0004703 {source="ISBN:0471888893"} ! dorsal thalamus +property_value: dc-contributor https://github.com/cmungall + +[Term] +id: UBERON:0001945 +name: superior colliculus +def: "Part of the midbrain tecturm consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of supeior colliculus from Wikipedia.org and Neuronames (MM)." [BIRNLEX:1040] +comment: ). In hagfish, lamprey, and shark it is a relatively small structure, but in teleost fish it is greatly expanded, in some cases becoming the largest structure in the brain. (See the adjoining drawing of a codfish brain.) In amphibians, reptiles, and especially birds it is also a very significant component, but in mammals it is dwarfed by the massive expansion of the cerebral cortex. +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "anterior colliculus" EXACT [] +synonym: "anterior corpus quadrigeminum" EXACT [] +synonym: "colliculus bigeminalis oralis" RELATED LATIN [NeuroNames:473] +synonym: "colliculus cranialis" RELATED LATIN [NeuroNames:473] +synonym: "colliculus rostralis" RELATED LATIN [NeuroNames:473] +synonym: "colliculus superior" RELATED LATIN [NeuroNames:473] +synonym: "corpora bigemina" RELATED [] +synonym: "corpus quadrigeminum superius" RELATED LATIN [NeuroNames:473] +synonym: "cranial colliculus" EXACT [] +synonym: "dorsal midbrain" RELATED [] +synonym: "layers of the superior colliculus" RELATED [NeuroNames:473] +synonym: "lobus opticus" RELATED [BTO:0000965] +synonym: "nates" RELATED LATIN [NeuroNames:473] +synonym: "optic lobe" RELATED [] +synonym: "optic tectum" EXACT SENSU [http://en.wikipedia.org/wiki/Superior_colliculus, NCBITaxon:32443, NCBITaxon:7777, ZFA:0000445] +synonym: "optic tectum" RELATED [] +synonym: "strata (grisea et alba) colliculi cranialis" RELATED LATIN [NeuroNames:473] +synonym: "strata (grisea et alba) colliculi superioris" RELATED LATIN [NeuroNames:473] +synonym: "tectal lobe" RELATED [] +synonym: "tectum" RELATED [] +synonym: "tectum opticum" RELATED [] +xref: AAO:0010609 +xref: BAMS:SC +xref: BIRNLEX:1040 +xref: BM:MB-Tec-SC +xref: BTO:0000965 +xref: DHBA:12292 +xref: DMBA:16678 +xref: EFO:0002474 +xref: EMAPA:32869 +xref: EV:0100245 +xref: FMA:62403 +xref: GAID:576 +xref: HBA:9114 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=473 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=473 {source="BIRNLEX:1040"} +xref: http://linkedlifedata.com/resource/umls/id/C0228405 +xref: MA:0001068 +xref: MESH:A08.186.211.132.659.237.816 +xref: Superior:colliculus +xref: TAO:0000445 +xref: UMLS:C0228405 {source="BIRNLEX:1040"} +xref: XAO:0003226 +xref: ZFA:0000445 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0006794 ! visual processing part of nervous system +is_a: UBERON:0015212 ! lateral structure +disjoint_from: UBERON:0001946 {source="lexical"} ! inferior colliculus +relationship: in_lateral_side_of UBERON:0002314 {source="FMA-abduced-lr"} ! midbrain tectum +relationship: part_of UBERON:0002259 ! corpora quadrigemina + +[Term] +id: UBERON:0001946 +name: inferior colliculus +def: "Part of the midbrain tectum, consisting of paired predominantly gray matter elevations on the dorsal aspect of the midbrain, located caudal to the superior colliculus, dorsal to the periaqueductal gray of the cerebral aqueduct and rostral to the cerebellum. According to Neuronames, the inferior colliculus comprises the central, pericentral and external nucleus and two predominantly white matter structures, the brachium of the inferior colliculus and the commissure of the inferior colliculus (MM)." [BIRNLEX:806] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "caudal colliculus" EXACT [] +synonym: "colliculus caudalis" RELATED LATIN [NeuroNames:476] +synonym: "colliculus inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_colliculus] +synonym: "corpus bigeminalis caudalis" RELATED LATIN [NeuroNames:476] +synonym: "corpus bigeminum posterioris" RELATED LATIN [NeuroNames:476] +synonym: "corpus quadrigeminum inferius" RELATED LATIN [NeuroNames:476] +synonym: "inferior colliculi" EXACT PLURAL [EV:0100246] +synonym: "posterior colliculus" EXACT [] +synonym: "posterior corpus quadrigeminum" EXACT [] +xref: BAMS:IC +xref: BIRNLEX:806 +xref: DHBA:12305 +xref: DMBA:16692 +xref: EFO:0002465 +xref: EMAPA:32870 +xref: EV:0100246 +xref: FMA:62404 +xref: GAID:575 +xref: HBA:9102 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=476 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=476 {source="BIRNLEX:806"} +xref: http://linkedlifedata.com/resource/umls/id/C0228411 +xref: Inferior:colliculus +xref: MA:0001067 +xref: MBA:4 +xref: MESH:A08.186.211.132.659.237.364 +xref: UMLS:C0228411 {source="BIRNLEX:806"} +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0002314 {source="FMA-abduced-lr"} ! midbrain tectum +relationship: part_of UBERON:0002259 ! corpora quadrigemina + +[Term] +id: UBERON:0001947 +name: red nucleus +def: "Large round nucleus located in the midbrain tegmentum, consisting of a magnocellular and parvicellular portion in most species studied." [BIRNLEX:1478] +subset: pheno_slim +subset: uberon_slim +synonym: "nucleus rotundus subthalamo-peduncularis" RELATED LATIN [NeuroNames:505] +synonym: "nucleus ruber" EXACT LATIN [TAO:0000552] +synonym: "nucleus ruber" RELATED LATIN [http://en.wikipedia.org/wiki/Red_nucleus] +synonym: "nucleus ruber tegmenti" RELATED LATIN [MP:MP] +synonym: "nucleus ruber tegmenti (Stilling)" RELATED LATIN [NeuroNames:505] +synonym: "R" BROAD ABBREVIATION [BIRNLEX:1478, NIFSTD:NeuroNames_abbrevSource] +synonym: "red nucleus (Burdach)" RELATED [NeuroNames:505] +xref: BAMS:R +xref: BAMS:RN +xref: BIRNLEX:1478 +xref: BM:MB-RN +xref: DHBA:12247 +xref: EHDAA2:0004706 +xref: EMAPA:35724 +xref: EV:0100248 +xref: FMA:62407 +xref: GAID:586 +xref: HBA:9053 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=505 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=505 {source="BIRNLEX:1478"} +xref: http://linkedlifedata.com/resource/umls/id/C0034910 +xref: http://www.snomedbrowser.com/Codes/Details/279287006 +xref: MA:0001063 +xref: MBA:214 +xref: MESH:A08.186.211.132.659.822.642 +xref: Red:nucleus +xref: TAO:0000552 +xref: UMLS:C0034910 {source="BIRNLEX:1478"} +xref: ZFA:0000552 +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus +relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum + +[Term] +id: UBERON:0001948 +name: regional part of spinal cord +def: "A multi-tissue structure that is part of a spinal cord." [OBOL:automatic] +subset: non_informative +synonym: "spinal cord part" RELATED [] +xref: BIRNLEX:1496 +xref: http://linkedlifedata.com/resource/umls/id/C1268166 +xref: http://www.snomedbrowser.com/Codes/Details/244437008 +xref: NCIT:C33969 +xref: UMLS:C1268166 {source="ncithesaurus:Spinal_Cord_Part"} +is_a: UBERON:0000073 ! regional part of nervous system +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000481 ! multi-tissue structure +intersection_of: part_of UBERON:0002240 ! spinal cord +relationship: part_of UBERON:0002240 ! spinal cord + +[Term] +id: UBERON:0001949 +name: gingival epithelium +def: "A stratified squamous epithelium consisting of a basal layer; it is keratinized or parakeratinized[BTO]." [BTO:0004998] +synonym: "epithelial tissue of gingiva" EXACT [OBOL:automatic] +synonym: "epithelium of gingiva" EXACT [] +synonym: "gingiva epithelial tissue" EXACT [OBOL:automatic] +synonym: "gingiva epithelium" EXACT [OBOL:automatic] +xref: BTO:0004998 +xref: FMA:62423 +xref: http://linkedlifedata.com/resource/umls/id/C1179154 +xref: MA:0001576 +xref: NCIT:C49239 +xref: UMLS:C1179154 {source="ncithesaurus:Gingival_Epithelium"} +is_a: UBERON:0002424 ! oral epithelium +is_a: UBERON:0006915 ! stratified squamous epithelium +is_a: UBERON:0035037 ! jaw epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001828 ! gingiva +relationship: part_of UBERON:0001828 ! gingiva + +[Term] +id: UBERON:0001950 +name: neocortex +def: "An area of cerebral cortex defined on the basis of cytoarchitecture that have six layers. Starting from the cortical surface the layers are: molecular layer (I), external granular layer (II), external pyramidal layer (III), internal granular layer (IV), internal pyramidal layer (V), and multiform layer (VI). Neocortex is most prominent in the frontal lobe, the parietal lobe, the temporal lobe and the occipital lobe, less so in the cingulate gyrus, the parahippocampal gyrus and the insula. It is composed of two subdivisions: true isocortex and proisocortex (Carpenter-83)(NN)" [BIRNLEX:2547, OldNeuroNames:754] +subset: pheno_slim +subset: uberon_slim +synonym: "cerebral neocortex" EXACT [] +synonym: "homogenetic cortex" EXACT DEPRECATED [ISBN:0471888893] +synonym: "homotypical cortex" EXACT [BIRNLEX:2547] +synonym: "iso-cortex" RELATED [BAMS:iso-cortex] +synonym: "isocortex" NARROW [BRAINSPAN:BRAINSPAN] +synonym: "isocortex (sensu lato)" EXACT [FMA:62429] +synonym: "neocortex (isocortex)" EXACT [DHBA:10160] +synonym: "neopallial cortex" EXACT [] +synonym: "neopallium" EXACT [] +synonym: "nonolfactory cortex" RELATED [BTO:0000920] +synonym: "nucleus hypoglossalis" RELATED LATIN [NeuroNames:757] +xref: BAMS:ISO +xref: BAMS:Iso-cortex +xref: BAMS:NCX +xref: BIRNLEX:2547 +xref: BTO:0000920 +xref: DHBA:10160 +xref: EHDAA2:0004662 +xref: EMAPA:32842 +xref: EMAPA:35589 +xref: FMA:62429 +xref: GAID:677 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=757 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=757 {source="BIRNLEX:2547"} +xref: http://en.wikipedia.org/wiki/Neocortex +xref: http://linkedlifedata.com/resource/umls/id/C0175173 +xref: MA:0002754 +xref: MBA:315 +xref: MESH:A08.186.211.730.885.213.420 +xref: PBA:294021746 +xref: UMLS:C0175173 {source="BIRNLEX:2547"} +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0000956 ! cerebral cortex +relationship: part_of UBERON:0000956 ! cerebral cortex + +[Term] +id: UBERON:0001951 +name: epithelium of nasopharynx +alt_id: UBERON:0003237 +def: "An epithelium that is part of a nasopharynx [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of nasal part of pharynx" EXACT [OBOL:automatic] +synonym: "epithelial tissue of nasopharynx" EXACT [OBOL:automatic] +synonym: "epithelial tissue of rhinopharynx" EXACT [OBOL:automatic] +synonym: "epithelium of nasal part of pharynx" EXACT [OBOL:automatic] +synonym: "epithelium of rhinopharynx" EXACT [OBOL:automatic] +synonym: "nasal part of pharynx epithelial tissue" EXACT [OBOL:automatic] +synonym: "nasal part of pharynx epithelium" EXACT [OBOL:automatic] +synonym: "nasopharyngeal epithelium" RELATED [BTO:0004480] +synonym: "nasopharynx epithelial tissue" EXACT [OBOL:automatic] +synonym: "nasopharynx epithelium" EXACT [] +synonym: "rhinopharynx epithelial tissue" EXACT [OBOL:automatic] +synonym: "rhinopharynx epithelium" EXACT [OBOL:automatic] +xref: BTO:0004480 +xref: CALOHA:TS-0662 +xref: EHDAA2:0001241 +xref: EHDAA:7090 +xref: EMAPA:17672 +xref: FMA:62452 +xref: http://linkedlifedata.com/resource/umls/id/C1179157 +xref: MA:0001865 +xref: NCIT:C49263 +xref: UMLS:C1179157 {source="ncithesaurus:Nasopharynx_Epithelium"} +xref: VHOG:0001038 +is_a: UBERON:0003351 ! pharyngeal epithelium +is_a: UBERON:0004814 ! upper respiratory tract epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001728 ! nasopharynx +relationship: part_of UBERON:0001728 ! nasopharynx + +[Term] +id: UBERON:0001952 +name: epithelium of oropharynx +def: "An epithelium that is part of a oropharynx [Automatically generated definition]." [OBOL:automatic] +synonym: "oropharyngeal epithelium" EXACT [] +synonym: "oropharynx epithelial tissue" EXACT [OBOL:automatic] +synonym: "oropharynx epithelium" EXACT [MA:0001605] +xref: EHDAA2:0004083 +xref: EMAPA:37705 {source="MA:th"} +xref: FMA:62453 +xref: http://linkedlifedata.com/resource/umls/id/C1179158 +xref: MA:0001605 +xref: NCIT:C49264 +xref: UMLS:C1179158 {source="ncithesaurus:Oropharynx_Epithelium"} +is_a: UBERON:0003351 ! pharyngeal epithelium +is_a: UBERON:0004808 ! gastrointestinal system epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001729 ! oropharynx +relationship: part_of UBERON:0001729 ! oropharynx + +[Term] +id: UBERON:0001953 +name: presubiculum +def: "A modified six-layered cortex between the subiculum and the main part of the parahippocampal gyrus." [http://medical-dictionary.thefreedictionary.com/presubiculum] +synonym: "area 27 of Brodmann" RELATED INCONSISTENT [FMA:62486] +synonym: "praesubiculum" RELATED LATIN [NeuroNames:167] +synonym: "presubicular cortex (presubiculum)" EXACT [DHBA:10315] +synonym: "presubiculum (Cajal)" EXACT [BIRNLEX:1108] +xref: BAMS:PRE +xref: BAMS:PRS +xref: BAMS:PrS +xref: BIRNLEX:1108 +xref: BM:Tel-Cx-PSB +xref: DHBA:10315 +xref: DMBA:16172 +xref: EMAPA:35703 +xref: FMA:62486 +xref: HBA:4252 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=167 {source="BIRNLEX:1108"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=167 +xref: http://linkedlifedata.com/resource/umls/id/C0175194 +xref: MA:0000923 +xref: MBA:1084 +xref: UMLS:C0175194 {source="BIRNLEX:1108"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation +relationship: part_of UBERON:0002973 {source="FMA"} ! parahippocampal gyrus + +[Term] +id: UBERON:0001954 +name: Ammon's horn +alt_id: UBERON:0003940 +alt_id: UBERON:0004165 +def: "A part of the brain consisting of a three layered cortex located in the forebrain bordering the medial surface of the lateral ventricle. The term hippocampus is often used synonymously with hippocampal formation which consists of the hippocampus proper or Cornu Ammonis, the dentate gyrus and the subiculum." [BIRNLEX:721] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "ammon gyrus" EXACT [GO:0021541] +synonym: "ammon horn" EXACT [BIRNLEX:721] +synonym: "Ammon horn fields" RELATED [BAMS:CA] +synonym: "Ammon's horn" EXACT [GO:0021541] +synonym: "Ammons horn" RELATED [BTO:0003705] +synonym: "cornu ammonis" RELATED [GO:0021541] +synonym: "hippocampus" RELATED [MA:0000191] +synonym: "hippocampus major" EXACT [] +synonym: "hippocampus proper" EXACT [BIRNLEX:721] +synonym: "hippocampus proprius" EXACT LATIN [FMA:62493, FMA:TA] +xref: BAMS:CA +xref: BIRNLEX:721 +xref: BM:Tel-CAM +xref: BTO:0003705 +xref: CALOHA:TS-0460 +xref: DHBA:10296 +xref: DMBA:16124 +xref: EFO:0000530 +xref: EHDAA2:0004443 +xref: EMAPA:32772 +xref: EMAPA:32845 +xref: EV:0100180 +xref: FMA:62493 +xref: GAID:623 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3157 +xref: http://en.wikipedia.org/wiki/Hippocampus +xref: http://linkedlifedata.com/resource/umls/id/C0019564 +xref: http://scalablebrainatlas.incf.org/services/thumbnail.php?template=ABA07&size=L&dim=2d3d&format=png®ion=CA +xref: http://www.snomedbrowser.com/Codes/Details/361561007 +xref: MA:0000191 +xref: MAT:0000114 +xref: MBA:375 +xref: MESH:A08.186.211.577.405 +xref: MIAA:0000114 +xref: NCIT:C12444 +xref: NCIT:C32374 +xref: OpenCyc:Mx4rv3piFJwpEbGdrcN5Y29ycA +xref: PBA:128012244 +xref: UMLS:C0019564 {source="ncithesaurus:Hippocampus"} +xref: UMLS:C0019564 {source="BIRNLEX:721"} +xref: VHOG:0001177 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000349 {source="FMA"} ! limbic system +relationship: part_of UBERON:0002421 {source="ABA"} ! hippocampal formation +relationship: part_of UBERON:0002600 {source="FMA"} ! limbic lobe + +[Term] +id: UBERON:0001955 +name: epithelium of respiratory bronchiole +def: "An epithelium that is part of a respiratory bronchiole [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchiolus respiratorius epithelial tissue" EXACT [OBOL:automatic] +synonym: "bronchiolus respiratorius epithelium" EXACT [OBOL:automatic] +synonym: "epithelial tissue of bronchiolus respiratorius" EXACT [OBOL:automatic] +synonym: "epithelial tissue of respiratory bronchiole" EXACT [OBOL:automatic] +synonym: "epithelium of bronchiolus respiratorius" EXACT [OBOL:automatic] +synonym: "respiratory bronchiole epithelial tissue" EXACT [OBOL:automatic] +synonym: "respiratory bronchiole epithelium" EXACT [] +xref: EMAPA:35730 +xref: FMA:62498 +xref: http://linkedlifedata.com/resource/umls/id/C1179179 +xref: MA:0001773 +xref: NCIT:C48943 +xref: UMLS:C1179179 {source="ncithesaurus:Respiratory_Bronchiole_Epithelium"} +is_a: UBERON:0002051 ! epithelium of bronchiole +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002188 ! respiratory bronchiole +relationship: part_of UBERON:0002188 ! respiratory bronchiole + +[Term] +id: UBERON:0001956 +name: cartilage of bronchus +def: "The hyaline cartilaginous structures that support the bronchi, present as irregular rings in the larger bronchi (and not as regular as in the trachea), and as small plates and islands in the smaller bronchi; as the branching continues through the bronchial tree, the amount of hyaline cartilage in the walls decreases until it is absent in the smallest bronchioles[MP]." [MP:0010988] +subset: pheno_slim +synonym: "bronchi cartilage" EXACT [OBOL:automatic] +synonym: "bronchial cartilage" EXACT [] +synonym: "bronchial cartilage ring" EXACT [MP:0010988] +synonym: "bronchial trunk cartilage" EXACT [OBOL:automatic] +synonym: "bronchus cartilage" EXACT [] +synonym: "cartilage of bronchi" EXACT [OBOL:automatic] +synonym: "cartilage of bronchial trunk" EXACT [OBOL:automatic] +synonym: "cartilagines bronchiales" EXACT PLURAL [] +xref: EMAPA:35192 +xref: FMA:62649 +xref: http://linkedlifedata.com/resource/umls/id/C0225604 +xref: http://www.snomedbrowser.com/Codes/Details/278980009 +xref: MA:0001835 +xref: NCIT:C49209 +xref: UMLS:C0225604 {source="ncithesaurus:Bronchus_Cartilage"} +is_a: UBERON:0003603 ! lower respiratory tract cartilage +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0002185 ! bronchus +relationship: composed_primarily_of UBERON:0001994 {source="MP"} ! hyaline cartilage tissue +relationship: contributes_to_morphology_of UBERON:0002185 ! bronchus +relationship: part_of UBERON:0002185 ! bronchus + +[Term] +id: UBERON:0001957 +name: submucosa of bronchus +def: "A submucosa that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchi submucosa" EXACT [OBOL:automatic] +synonym: "bronchial submucosa" EXACT [] +synonym: "bronchial trunk submucosa" EXACT [OBOL:automatic] +synonym: "bronchus submucosa" EXACT [] +synonym: "submucosa of bronchi" EXACT [OBOL:automatic] +synonym: "submucosa of bronchial trunk" EXACT [OBOL:automatic] +synonym: "submucous layer of bronchi" RELATED [BTO:0002108] +synonym: "tela submucosa bronchi" EXACT LATIN [FMA:62653, FMA:TA] +xref: BTO:0002108 +xref: EMAPA:37449 {source="MA:th"} +xref: FMA:62653 +xref: http://linkedlifedata.com/resource/umls/id/C0225601 +xref: http://www.snomedbrowser.com/Codes/Details/85546005 +xref: MA:0001837 +xref: NCIT:C49214 +xref: UMLS:C0225601 {source="ncithesaurus:Bronchus_Submucosa"} +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004777 ! respiratory system submucosa +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0002185 ! bronchus +relationship: part_of UBERON:0002185 ! bronchus + +[Term] +id: UBERON:0001958 +name: terminal bronchiole epithelium +def: "An epithelium that lines a terminal bronchiole." [http://orcid.org/0000-0002-6601-2165] +synonym: "bronchiolus terminalis epithelial tissue" EXACT [OBOL:automatic] +synonym: "bronchiolus terminalis epithelium" EXACT [OBOL:automatic] +synonym: "epithelial tissue of bronchiolus terminalis" EXACT [OBOL:automatic] +synonym: "epithelial tissue of terminal bronchiole" EXACT [OBOL:automatic] +synonym: "epithelium of bronchiolus terminalis" EXACT [OBOL:automatic] +synonym: "epithelium of terminal bronchiole" EXACT [FMA:62794] +synonym: "terminal bronchiole epithelial tissue" EXACT [OBOL:automatic] +synonym: "terminal bronchiole epithelium" EXACT [] +xref: EMAPA:36283 +xref: FMA:62794 +xref: http://linkedlifedata.com/resource/umls/id/C1179400 +xref: MA:0001774 +xref: NCIT:C33755 +xref: UMLS:C1179400 {source="ncithesaurus:Terminal_Bronchiole_Epithelium"} +is_a: UBERON:0002051 ! epithelium of bronchiole +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002187 ! terminal bronchiole +relationship: part_of UBERON:0002187 ! terminal bronchiole + +[Term] +id: UBERON:0001959 +name: white pulp of spleen +def: "the parenchymatous tissue of the spleen that surrounds splenic blood vessels, consists of compact masses of lymphatic cells and is where foreign material removed from the blood is used to initiate an immune reaction that results in the production of antibodies" [MGI:csmith, MP:0002357] +subset: pheno_slim +subset: uberon_slim +synonym: "noduli lymphoidei splenici" RELATED LATIN [http://en.wikipedia.org/wiki/White_pulp] +synonym: "pulpa alba" EXACT LATIN [FMA:62805, FMA:TA] +synonym: "spleen white pulp" EXACT [] +synonym: "splenic white pulp" EXACT [] +synonym: "white pulp" EXACT [] +xref: CALOHA:TS-1264 +xref: EMAPA:35809 +xref: FMA:62805 +xref: http://linkedlifedata.com/resource/umls/id/C0229686 +xref: MA:0000762 +xref: NCIT:C12993 +xref: UMLS:C0229686 {source="ncithesaurus:Splenic_White_Pulp"} +xref: White:pulp +is_a: UBERON:1000023 ! spleen pulp +relationship: contributes_to_morphology_of UBERON:0002106 ! spleen + +[Term] +id: UBERON:0001960 +name: periarterial lymphatic sheath +def: "The area of the spleen in which T cells surround the central arteriole" [MP:0002358] +subset: pheno_slim +synonym: "PALS" EXACT ABBREVIATION [MP:0002358] +synonym: "periarterial lymphoid sheath" EXACT [] +synonym: "periarteriolar sheath" EXACT [MP:0002358] +synonym: "spleen periarteriolar lymphatic sheath" EXACT [] +synonym: "splenic periarteriolar lymphoid sheath" RELATED [MP:0002358] +synonym: "T cell domain of the splenic white pulp" EXACT [MP:0002358] +xref: EMAPA:37750 {source="MA:th"} +xref: FMA:62810 +xref: MA:0000765 +is_a: UBERON:0004177 ! hemopoietic organ +is_a: UBERON:0005172 ! abdomen element +is_a: UBERON:0010393 ! T cell domain +is_a: UBERON:0013765 ! digestive system element +intersection_of: UBERON:0010393 ! T cell domain +intersection_of: part_of UBERON:0001959 ! white pulp of spleen +relationship: contributes_to_morphology_of UBERON:0001959 ! white pulp of spleen +relationship: part_of UBERON:0001959 ! white pulp of spleen + +[Term] +id: UBERON:0001961 +name: mucosa-associated lymphoid tissue +def: "diffuse system of small concentrations of lymphoid tissue found in various sites of the body such as the gastrointestinal tract, thyroid, breast, lung, salivary glands, eye, and skin[WP]. Mucosal-associated lymphoid tissue is typically found as nodules associated with mucosal epithelia with distinct internal structures including B- and T-zones for the activation of lymphocytes[GO]." [http://en.wikipedia.org/wiki/Mucosa-associated_lymphoid_tissue] +subset: pheno_slim +subset: uberon_slim +synonym: "epithelio-lymphoid tissue" EXACT [FMA:62819] +synonym: "MALT" EXACT [] +synonym: "mucosa associated lymphatic tissue" EXACT [] +synonym: "mucosa associated lymphoid tissue" EXACT [] +synonym: "mucosa-associated lymphoid tissue" EXACT [GO:0048537] +synonym: "mucosal-associated lymphatic tissue" EXACT [GO:0048537] +synonym: "mucosal-associated lymphoid tissue" EXACT [GO:0048537] +xref: FMA:62819 +xref: http://en.wikipedia.org/wiki/Mucosa-associated_lymphoid_tissue +xref: http://linkedlifedata.com/resource/umls/id/C0599921 +xref: MA:0000140 +xref: NCIT:C12910 +xref: UMLS:C0599921 {source="ncithesaurus:Mucosa-Associated_Lymphoid_Tissue"} +is_a: UBERON:0012069 {source="FMA"} ! epithelium-associated lymphoid tissue + +[Term] +id: UBERON:0001962 +name: gut-associated lymphoid tissue +def: "Mucosa-associated lymphoid tissue in digestive tract. includes Peyer's patches, appendix, and solitary lymph nodules[GO]." [http://en.wikipedia.org/wiki/Gut-associated_lymphoid_tissue] +subset: pheno_slim +subset: uberon_slim +synonym: "GALT" RELATED [] +synonym: "gut associated lymphoid tissue" EXACT [] +xref: FMA:62820 +xref: http://en.wikipedia.org/wiki/Gut-associated_lymphoid_tissue +xref: http://linkedlifedata.com/resource/umls/id/C0596638 +xref: MA:0000136 +xref: NCIT:C12936 +xref: UMLS:C0596638 {source="ncithesaurus:Gut_Associated_Lymphoid_Tissue"} +is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue +intersection_of: UBERON:0001961 ! mucosa-associated lymphoid tissue +intersection_of: part_of UBERON:0001555 ! digestive tract +relationship: part_of UBERON:0001555 ! digestive tract + +[Term] +id: UBERON:0001963 +name: bronchial-associated lymphoid tissue +def: "A diffuse collection of lymphpoid cells that participate in airway immune responses" [ISBN:0123813611] +comment: Lymphoid tissue associated with airways in mice has functional similarities to human BALT[ISBN:0123813611] Notes: FMA classifies this as organized, not diffuse +subset: pheno_slim +synonym: "BALT" RELATED [] +synonym: "bronchus associated lymphoid tissue" EXACT [] +xref: FMA:62821 +xref: http://linkedlifedata.com/resource/umls/id/C1179418 +xref: MA:0000135 +xref: NCIT:C32234 +xref: UMLS:C1179418 {source="ncithesaurus:Bronchus-Associated_Lymphoid_Tissue"} +is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0001961 ! mucosa-associated lymphoid tissue +intersection_of: part_of UBERON:0002185 ! bronchus +relationship: part_of UBERON:0002185 ! bronchus + +[Term] +id: UBERON:0001964 +name: least splanchnic nerve +def: "A thoracic nerve that nerve travels into the abdomen, where its fibers synapse in the renal ganglia." [http://en.wikipedia.org/wiki/Thoracic_splanchnic_nerves#cite_note-4] +subset: organ_slim +subset: uberon_slim +synonym: "least thoracic splanchnic nerve" EXACT [FMA:6283] +synonym: "lowest splanchnic nerve" EXACT [FMA:6283] +synonym: "nervus splanchnicus imus" EXACT LATIN [FMA:6283, FMA:TA] +synonym: "ramus renalis nervus splanchnici minoris" EXACT [FMA:TA] +synonym: "ramus renalis nervus splanchnici minoris" EXACT LATIN [FMA:6283, FMA:TA] +synonym: "renal branch of lesser splanchnic nerve" EXACT [FMA:6283] +synonym: "renal nerve" EXACT [FMA:6283] +synonym: "thoracic splanchnic nerve" RELATED [] +xref: cite_note-4 +xref: EMAPA:29691 +xref: FMA:6283 +xref: http://www.snomedbrowser.com/Codes/Details/280506004 +xref: MA:0002635 +is_a: UBERON:0018679 {source="FMA"} ! thoracic splanchnic nerve +relationship: connected_to UBERON:0018676 ! renal nerve plexus + +[Term] +id: UBERON:0001965 +name: substantia nigra pars compacta +def: "Regional part of substantia nigra consisting of a densely packed region of cells, more or less dorsal to the pars reticulata, but extending into the pars reticulata in some species. The dominant neurotransmitter used by pars compacta neurons is dopamine. Pars compacta neurons are pigmented in many species (MM)." [BIRNLEX:990] +subset: pheno_slim +subset: uberon_slim +synonym: "compact part of substantia nigra" EXACT [] +synonym: "nucleus substantiae nigrae, pars compacta" RELATED LATIN [NeuroNames:537] +synonym: "pars compacta" EXACT [] +synonym: "pars compacta of substantia nigra" RELATED [NeuroNames:537] +synonym: "pars compacta substantiae nigrae" EXACT LATIN [FMA:62907, FMA:TA] +synonym: "SNC" BROAD ABBREVIATION [BIRNLEX:990, NIFSTD:NeuroNames_abbrevSource] +synonym: "SNpc" EXACT [] +synonym: "substantia nigra compact part" EXACT [BIRNLEX:990] +synonym: "substantia nigra compacta" EXACT [BIRNLEX:990] +synonym: "substantia nigra, compact division" RELATED [BAMS:SNC] +synonym: "substantia nigra, compact part" EXACT [] +synonym: "substantia nigra, pars compacta" RELATED LATIN [NeuroNames:537] +xref: BAMS:SNC +xref: BAMS:SNc +xref: BIRNLEX:990 +xref: BM:MB-SNc +xref: BTO:0003749 +xref: DHBA:12252 +xref: EMAPA:35836 +xref: FMA:62907 +xref: HBA:9074 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=537 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=537 {source="BIRNLEX:990"} +xref: http://en.wikipedia.org/wiki/Substantia_nigra_pars_compacta +xref: http://linkedlifedata.com/resource/umls/id/C0175412 +xref: MA:0001064 +xref: MBA:374 +xref: NCIT:C97341 +xref: UMLS:C0175412 {source="BIRNLEX:990"} +xref: UMLS:C0175412 {source="ncithesaurus:Pars_Compacta"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0002038 ! substantia nigra + +[Term] +id: UBERON:0001966 +name: substantia nigra pars reticulata +def: "Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM)." [BIRNLEX:968] +comment: the cells of pars reticulata bear a strong structural and functional resemblance to the inner segment of the globus pallidus +subset: pheno_slim +subset: uberon_slim +synonym: "nucleus substantiae nigrae, pars compacta" RELATED LATIN [NeuroNames:537] +synonym: "nucleus substantiae nigrae, pars reticularis" EXACT LATIN [FMA:62908, FMA:TA] +synonym: "pars compacta of substantia nigra" RELATED [NeuroNames:537] +synonym: "pars reticularis" EXACT LATIN [FMA:62908, FMA:TA] +synonym: "pars reticularis substantiae nigrae" EXACT LATIN [FMA:62908, FMA:TA] +synonym: "pars reticulata" EXACT [] +synonym: "reticular part of substantia nigra" EXACT [] +synonym: "SNPR" BROAD ABBREVIATION [MP:0000836] +synonym: "SNR" BROAD ABBREVIATION [BIRNLEX:968, NIFSTD:NeuroNames_abbrevSource] +synonym: "substantia nigra reticular part" RELATED [BAMS:SNR] +synonym: "substantia nigra reticular part" RELATED [BAMS:SNr] +synonym: "substantia nigra, pars compacta" RELATED LATIN [NeuroNames:537] +synonym: "substantia nigra, pars diffusa" EXACT LATIN [FMA:62908, FMA:TA] +synonym: "substantia nigra, pars reticulata" RELATED [BAMS:SNR] +synonym: "substantia nigra, reticular division" RELATED [BAMS:SNR] +synonym: "substantia nigra, reticular part" EXACT [] +xref: BAMS:SNR +xref: BAMS:SNr +xref: BIRNLEX:968 +xref: BM:MB-SNr +xref: BTO:0003750 +xref: DHBA:12259 +xref: EMAPA:35838 +xref: FMA:62908 +xref: HBA:9075 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=537 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=537 {source="BIRNLEX:968"} +xref: http://linkedlifedata.com/resource/umls/id/C0175413 +xref: MA:0001066 +xref: MBA:381 +xref: Pars:reticulata +xref: UMLS:C0175413 {source="BIRNLEX:968"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0002038 ! substantia nigra + +[Term] +id: UBERON:0001967 +name: reticular lamina of epithelium +def: "A thin extracellular layer that sometimes lies below the basal lamina, is composed chiefly of collagenous fibers, and serves to anchor the basal lamina to underlying connective tissue." [http://mw1.merriam-webster.com/medical/reticular%20lamina] +comment: See https://github.com/obophenotype/uberon/issues/1436 +subset: uberon_slim +synonym: "fibroreticular lamina" EXACT [FMA:62924] +synonym: "lamina fibroreticularis" EXACT LATIN [FMA:62924] +synonym: "lamina reticularis" RELATED [GO:0008004] +synonym: "reticular lamina" RELATED [FMA:62924] +synonym: "reticular membrane" RELATED [] +xref: FMA:62924 +xref: Reticular:lamina +is_a: UBERON:0005764 ! acellular membrane +relationship: part_of UBERON:0005769 ! basement membrane of epithelium + +[Term] +id: UBERON:0001968 +name: semen +def: "Organism substance that is composed of sperm cells suspended in seminal fluid." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "ejaculate" RELATED [] +synonym: "sperm" RELATED [BTO:0001230] +xref: BTO:0001230 +xref: CALOHA:TS-0917 +xref: EMAPA:31488 +xref: FMA:62966 +xref: GAID:1169 +xref: http://en.wikipedia.org/wiki/Semen +xref: http://linkedlifedata.com/resource/umls/id/C1518159 +xref: http://linkedlifedata.com/resource/umls/id/C2756969 +xref: MA:0002522 +xref: MESH:D012661 +xref: NCIT:C13277 +xref: NCIT:C13713 +xref: OpenCyc:Mx4rvgC-zpwpEbGdrcN5Y29ycA +xref: UMLS:C1518159 {source="ncithesaurus:Male_Genital_System_Fluid_or_Secretion"} +xref: UMLS:C2756969 {source="ncithesaurus:Semen"} +is_a: UBERON:0000463 ! organism substance +relationship: has_part UBERON:0006530 ! seminal fluid + +[Term] +id: UBERON:0001969 +name: blood plasma +def: "The liquid component of blood, in which erythrocytes are suspended." [http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "blood plasm" EXACT [] +synonym: "plasma" BROAD [MA:0002501] +synonym: "portion of blood plasma" EXACT [] +synonym: "portion of plasma" BROAD [FMA:62970] +xref: Blood:plasma +xref: BTO:0000131 +xref: CALOHA:TS-0800 +xref: EFO:0001905 +xref: EMAPA:35690 +xref: FMA:62970 +xref: GAID:1178 +xref: http://linkedlifedata.com/resource/umls/id/C0032105 +xref: MA:0002501 +xref: MAT:0000052 +xref: MESH:D010949 +xref: MIAA:0000052 +xref: NCIT:C13356 +xref: OpenCyc:Mx4rEg4ZYrIbEduAAAAOpmP6tw +xref: UMLS:C0032105 {source="ncithesaurus:Plasma"} +is_a: UBERON:0000179 ! haemolymphatic fluid +relationship: part_of UBERON:0000178 ! blood + +[Term] +id: UBERON:0001970 +name: bile +def: "vital aqueous secretion of the liver that is formed by hepatocytes and modified down stream by absorptive and secretory properties of the bile duct epithelium." [http://en.wikipedia.org/wiki/Bile, https://doi.org/10.1002/cphy.c120027] +subset: pheno_slim +subset: uberon_slim +synonym: "fel" RELATED [BTO:0000121] +synonym: "gall" RELATED [BTO:0000121] +xref: BTO:0000121 +xref: CALOHA:TS-1172 +xref: ENVO:02000023 +xref: FMA:62971 +xref: GAID:1157 +xref: galen:Bile +xref: http://en.wikipedia.org/wiki/Bile +xref: http://linkedlifedata.com/resource/umls/id/C0005388 +xref: MA:0002513 +xref: MESH:D001646 +xref: NCIT:C13192 +xref: UMLS:C0005388 {source="ncithesaurus:Bile"} +xref: ZFA:0005857 +is_a: UBERON:0000456 ! secretion of exocrine gland +is_a: UBERON:0006314 ! bodily fluid +intersection_of: UBERON:0000456 ! secretion of exocrine gland +intersection_of: produced_by UBERON:0002107 ! liver +relationship: produced_by UBERON:0002107 ! liver + +[Term] +id: UBERON:0001971 +name: gastric juice +def: "." [http://en.wikipedia.org/wiki/Gastric_juice] +subset: pheno_slim +subset: uberon_slim +synonym: "stomach secretion" EXACT [] +synonym: "succus gastricus" RELATED [BTO:0000501] +xref: BTO:0000501 +xref: FMA:62972 +xref: GAID:1160 +xref: galen:GastricJuice +xref: Gastric:juice +xref: http://linkedlifedata.com/resource/umls/id/C0017133 +xref: MA:0002519 +xref: MESH:D005750 +xref: NCIT:C32661 +xref: UMLS:C0017133 {source="ncithesaurus:Gastric_Secretion"} +is_a: UBERON:0000456 ! secretion of exocrine gland +intersection_of: UBERON:0000456 ! secretion of exocrine gland +intersection_of: produced_by UBERON:0011953 ! stomach glandular region +relationship: produced_by UBERON:0011953 ! stomach glandular region + +[Term] +id: UBERON:0001972 +name: submucosa of esophagus +def: "A submucosa that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] +synonym: "esophageal submucosa" EXACT [] +synonym: "esophagus submucosa" EXACT [] +synonym: "gullet submucosa" EXACT [OBOL:automatic] +synonym: "oesophagus submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of esophagus" EXACT [] +synonym: "submucosa of gullet" EXACT [OBOL:automatic] +synonym: "submucosa of oesophagus" EXACT [OBOL:automatic] +synonym: "submucous layer of esophagus" RELATED [BTO:0002109] +synonym: "tela submucosa (oesophagus)" EXACT LATIN [FMA:62997, FMA:TA] +synonym: "tela submucosa esophagi" EXACT LATIN [BTO:0002109] +synonym: "tela submucosa oesophageae" EXACT LATIN [FMA:62997, FMA:TA] +synonym: "tela submucosa oesophagi" RELATED [BTO:0002109] +synonym: "tela submucosa of esophagus" EXACT [] +xref: BTO:0002109 +xref: EMAPA:35325 +xref: FMA:62997 +xref: http://www.snomedbrowser.com/Codes/Details/362128009 +xref: MA:0002724 +is_a: UBERON:0018257 ! submucosa of digestive tract +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001043 ! esophagus +relationship: part_of UBERON:0001096 ! wall of esophagus + +[Term] +id: UBERON:0001974 +name: lamina propria of esophagus +def: "A lamina propria that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] +synonym: "esophageal lamina propria" RELATED [EMAPA:26987] +synonym: "esophagus lamina propria" EXACT [] +synonym: "esophagus lamina propria mucosa" EXACT [OBOL:automatic] +synonym: "esophagus lamina propria mucosae" EXACT [OBOL:automatic] +synonym: "gullet lamina propria" EXACT [OBOL:automatic] +synonym: "gullet lamina propria mucosa" EXACT [OBOL:automatic] +synonym: "gullet lamina propria mucosae" EXACT [OBOL:automatic] +synonym: "lamina propria mucosa of esophagus" EXACT [OBOL:automatic] +synonym: "lamina propria mucosa of gullet" EXACT [OBOL:automatic] +synonym: "lamina propria mucosa of oesophagus" EXACT [OBOL:automatic] +synonym: "lamina propria mucosae of esophagus" EXACT [] +synonym: "lamina propria mucosae of gullet" EXACT [OBOL:automatic] +synonym: "lamina propria mucosae of oesophagus" EXACT [OBOL:automatic] +synonym: "lamina propria of gullet" EXACT [OBOL:automatic] +synonym: "lamina propria of oesophagus" EXACT [OBOL:automatic] +synonym: "oesophagus lamina propria" RELATED [] +synonym: "oesophagus lamina propria mucosa" EXACT [OBOL:automatic] +synonym: "oesophagus lamina propria mucosae" EXACT [OBOL:automatic] +xref: EMAPA:26987 +xref: FMA:63050 +xref: http://linkedlifedata.com/resource/umls/id/C1707949 +xref: MA:0001568 +xref: NCIT:C49223 +xref: UMLS:C1707949 {source="ncithesaurus:Esophageal_Lamina_Propria"} +is_a: UBERON:0000030 ! lamina propria +intersection_of: UBERON:0000030 ! lamina propria +intersection_of: part_of UBERON:0001043 ! esophagus +relationship: part_of UBERON:0002469 {source="FMA"} ! esophagus mucosa + +[Term] +id: UBERON:0001975 +name: serosa of esophagus +def: "A serous membrane that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] +synonym: "esophagus serosa" EXACT [] +synonym: "esophagus serous membrane" EXACT [OBOL:automatic] +synonym: "gullet serosa" EXACT [OBOL:automatic] +synonym: "gullet serous membrane" EXACT [OBOL:automatic] +synonym: "oesophagus serosa" RELATED [] +synonym: "oesophagus serous membrane" EXACT [OBOL:automatic] +synonym: "serosa of abdominal part of esophagus" EXACT [] +synonym: "serosa of gullet" EXACT [OBOL:automatic] +synonym: "serosa of oesophagus" EXACT [] +synonym: "serous coat of oesophagus" EXACT [] +synonym: "serous membrane of esophagus" EXACT [OBOL:automatic] +synonym: "serous membrane of gullet" EXACT [OBOL:automatic] +synonym: "serous membrane of oesophagus" EXACT [OBOL:automatic] +synonym: "tunica serosa oesophageae" EXACT LATIN [FMA:63057, FMA:TA] +xref: EMAPA:35322 +xref: FMA:63057 +xref: MA:0001571 +is_a: UBERON:0000042 ! serous membrane +intersection_of: UBERON:0000042 ! serous membrane +intersection_of: part_of UBERON:0001043 ! esophagus +relationship: part_of UBERON:0001096 ! wall of esophagus + +[Term] +id: UBERON:0001976 +name: epithelium of esophagus +def: "the epithelial layer that lines the luminal space of the esophagus" [ISBN:0-683-40008-8, MP:0000468] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "epithelial tissue of esophagus" EXACT [OBOL:automatic] +synonym: "epithelial tissue of gullet" EXACT [OBOL:automatic] +synonym: "epithelial tissue of oesophagus" EXACT [OBOL:automatic] +synonym: "epithelium of gullet" EXACT [OBOL:automatic] +synonym: "epithelium of oesophagus" EXACT [OBOL:automatic] +synonym: "esophageal epithelium" EXACT [] +synonym: "esophagus epithelial tissue" EXACT [OBOL:automatic] +synonym: "esophagus epithelium" EXACT [] +synonym: "gullet epithelial tissue" EXACT [OBOL:automatic] +synonym: "gullet epithelium" EXACT [OBOL:automatic] +synonym: "oesophagus epithelial tissue" EXACT [OBOL:automatic] +synonym: "oesophagus epithelium" RELATED [] +xref: BTO:0001578 +xref: CALOHA:TS-0698 +xref: EFO:0003041 +xref: EHDAA2:0001287 +xref: EMAPA:16835 +xref: FMA:63063 +xref: http://linkedlifedata.com/resource/umls/id/C1179544 +xref: MA:0001565 +xref: NCIT:C49221 +xref: TAO:0001499 +xref: UMLS:C1179544 {source="ncithesaurus:Esophageal_Epithelium"} +xref: ZFA:0001499 +is_a: UBERON:0003350 ! epithelium of mucosa +is_a: UBERON:0003929 ! digestive tract epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001043 ! esophagus +relationship: contributes_to_morphology_of UBERON:0001043 ! esophagus +relationship: part_of UBERON:0002469 {source="FMA"} ! esophagus mucosa + +[Term] +id: UBERON:0001977 +name: blood serum +def: "The portion of blood plasma that excludes clotting factors." [http://en.wikipedia.org/wiki/Serum_(blood), http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "serum" EXACT [] +xref: BTO:0000133 +xref: BTO:0001239 +xref: CALOHA:TS-0923 +xref: EHDAA2:0004728 +xref: EMAPA:35770 +xref: FMA:63083 +xref: http://linkedlifedata.com/resource/umls/id/C0229671 +xref: MA:0002502 +xref: NCIT:C13325 +xref: Serum:(blood) +xref: UMLS:C0229671 {source="ncithesaurus:Serum"} +is_a: UBERON:0000179 ! haemolymphatic fluid +relationship: part_of UBERON:0001969 ! blood plasma + +[Term] +id: UBERON:0001978 +name: parenchyma of pancreas +synonym: "pancreas parenchyma" EXACT [] +synonym: "pancreatic parenchyma" EXACT [] +xref: EMAPA:32925 +xref: FMA:63120 +xref: http://www.snomedbrowser.com/Codes/Details/371401008 +xref: MA:0000724 +xref: VHOG:0001430 +is_a: UBERON:0000353 ! parenchyma +intersection_of: UBERON:0000353 ! parenchyma +intersection_of: part_of UBERON:0001264 ! pancreas +relationship: part_of UBERON:0001264 ! pancreas + +[Term] +id: UBERON:0001979 +name: venule +def: "One of the minute vessels that collect deoxygenated blood from the capillary plexuses returns it to the veins" [MESH:A07.231.432.952, MP:0004125] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "venula" RELATED LATIN [http://en.wikipedia.org/wiki/Venule] +xref: BTO:0002626 +xref: EMAPA:35917 +xref: FMA:63130 +xref: http://en.wikipedia.org/wiki/Venule +xref: http://linkedlifedata.com/resource/umls/id/C0042520 +xref: http://www.snomedbrowser.com/Codes/Details/341687009 +xref: MA:0000071 +xref: MESH:A07.231.432.952 +xref: NCIT:C12818 +xref: TAO:0005315 +xref: UMLS:C0042520 {source="ncithesaurus:Venule"} +xref: VHOG:0001765 +xref: ZFA:0005315 +is_a: UBERON:0003920 ! venous blood vessel +relationship: connects UBERON:0001638 ! vein +relationship: connects UBERON:0001982 ! capillary + +[Term] +id: UBERON:0001980 +name: arteriole +def: "The smallest division of the artery located between the muscular arteries and the capillaries[GO]." [GO:0014830] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "arteriola" RELATED LATIN [http://en.wikipedia.org/wiki/Arteriole] +xref: AAO:0010253 +xref: BTO:0001997 +xref: EMAPA:35146 +xref: FMA:63182 +xref: http://en.wikipedia.org/wiki/Arteriole +xref: http://linkedlifedata.com/resource/umls/id/C0003847 +xref: http://www.snomedbrowser.com/Codes/Details/337724002 +xref: MA:0000063 +xref: MESH:D001160 +xref: NCIT:C12672 +xref: TAO:0002138 +xref: UMLS:C0003847 {source="ncithesaurus:Arteriole"} +xref: VHOG:0001763 +xref: ZFA:0005255 +is_a: UBERON:0003509 {source="MA"} ! arterial blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: connects UBERON:0001637 ! artery +intersection_of: connects UBERON:0001982 ! capillary +relationship: connects UBERON:0001637 ! artery +relationship: connects UBERON:0001982 ! capillary +relationship: contributes_to_morphology_of UBERON:0001637 ! artery + +[Term] +id: UBERON:0001981 +name: blood vessel +def: "A vessel through which blood circulates in the body." [BTO:0001102, http://en.wikipedia.org/wiki/Blood_vessel] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "region of vascular tree organ" EXACT [FMA:50722] +synonym: "vas sanguineum" RELATED LATIN [http://en.wikipedia.org/wiki/Blood_vessel] +synonym: "vascular element" BROAD [EMAPA:35993] +synonym: "vascular tree organ region" EXACT [FMA:50722] +xref: AAO:0011004 +xref: AEO:0000207 +xref: Blood:vessel +xref: BTO:0001102 +xref: CALOHA:TS-0080 +xref: EFO:0000817 +xref: EHDAA2:0003252 +xref: EHDAA:240 +xref: EMAPA:32743 +xref: EMAPA:35993 +xref: FMA:50722 +xref: FMA:63183 +xref: GAID:169 +xref: http://linkedlifedata.com/resource/umls/id/C0005847 +xref: http://www.snomedbrowser.com/Codes/Details/361097006 +xref: MA:0000060 +xref: MAT:0000393 +xref: MESH:D001808 +xref: NCIT:C12679 +xref: NLXANAT:090901 +xref: OpenCyc:Mx4rvVjxlpwpEbGdrcN5Y29ycA +xref: TAO:0002137 +xref: UMLS:C0005847 {source="ncithesaurus:Blood_Vessel"} +xref: VHOG:0001250 +xref: XAO:0001011 +xref: ZFA:0005314 +is_a: UBERON:0000055 ! vessel +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: channel_for UBERON:0000178 ! blood +relationship: develops_from UBERON:0004872 ! splanchnic layer of lateral plate mesoderm +relationship: develops_from UBERON:0006965 {source="GO:0072360"} ! vascular cord +relationship: has_part UBERON:0007500 {source="EHDAA2"} ! epithelial tube open at both ends +relationship: part_of UBERON:0004537 ! blood vasculature + +[Term] +id: UBERON:0001982 +name: capillary +def: "Any of the smallest blood vessels connecting arterioles with venules." [http://en.wikipedia.org/wiki/Capillary, https://github.com/obophenotype/uberon/issues/137, ISBN:0073040584] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "blood capillary" EXACT [] +synonym: "capillary vessel" EXACT [] +xref: AAO:0010252 +xref: BTO:0002045 +xref: CALOHA:TS-2006 +xref: EFO:0001906 +xref: EMAPA:35198 +xref: EV:0100035 +xref: FMA:63194 +xref: http://en.wikipedia.org/wiki/Capillary +xref: http://linkedlifedata.com/resource/umls/id/C0935624 +xref: MA:0000065 +xref: MESH:A07.231.432.410 +xref: NCIT:C12685 +xref: NLXANAT:090902 +xref: OpenCyc:Mx4rvWEU-5wpEbGdrcN5Y29ycA +xref: TAO:0005250 +xref: UMLS:C0935624 {source="ncithesaurus:Capillary"} +xref: VHOG:0001253 +xref: XAO:0000116 +xref: ZFA:0005250 +is_a: UBERON:0001981 {source="FMA", source="MA", source="XAO"} ! blood vessel +is_a: UBERON:0010523 {source="ZFA"} ! microcirculatory vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: connects UBERON:0001979 ! venule +intersection_of: connects UBERON:0001980 ! arteriole +relationship: connects UBERON:0001979 ! venule +relationship: connects UBERON:0001980 ! arteriole + +[Term] +id: UBERON:0001983 +name: crypt of Lieberkuhn +def: "the tubular intestinal glands found in the mucosal membranes" [https://github.com/obophenotype/uberon/issues/213, ISBN:0-683-40008-8, MP:0000490] +subset: organ_slim +subset: pheno_slim +synonym: "crypt of Lieberkuhn" EXACT [] +synonym: "crypt of Lieberkühn" EXACT [] +synonym: "crypts of Lieberkühn" EXACT PLURAL [] +synonym: "follicles of lieberkuhn" EXACT [] +synonym: "intestinal crypt" EXACT [] +synonym: "intestinal crypts" EXACT PLURAL [] +synonym: "intestinal gland" BROAD [http://en.wikipedia.org/wiki/Crypts_of_Lieberkuhn] +synonym: "intestinal gland of Lieberkuhn" RELATED [FMA:63621] +synonym: "Lieberkuhn crypt" EXACT [] +synonym: "lieberkuhn crypt" EXACT [] +synonym: "Lieberkuhn gland" EXACT [] +synonym: "Lieberkuhn's gland" EXACT [] +synonym: "Lieberkuhn's glands" EXACT PLURAL [] +xref: EMAPA:35266 +xref: FMA:63621 +xref: http://linkedlifedata.com/resource/umls/id/C1621887 +xref: http://www.snomedbrowser.com/Codes/Details/118652008 +xref: Intestinal:crypt +xref: MA:0001535 +xref: NCIT:C32411 +xref: UMLS:C1621887 {source="ncithesaurus:Crypts_of_the_Lieberkuhn"} +is_a: UBERON:0000333 ! intestinal gland +relationship: contributes_to_morphology_of UBERON:0001242 ! intestinal mucosa +relationship: seeAlso UBERON:2005256 ! intervillus pockets + +[Term] +id: UBERON:0001984 +name: crypt of Lieberkuhn of large intestine +def: "A crypt of lieberkuhn that is part of a large intestine [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "intestinal gland of large intestine" EXACT [OBOL:automatic] +synonym: "large intestinal crypt of Lieberkuhn" EXACT [] +synonym: "large intestine crypt of Lieberkuhn" EXACT [] +synonym: "large intestine intestinal gland" EXACT [OBOL:automatic] +synonym: "large intestine lieberkuhn crypt" EXACT [OBOL:automatic] +synonym: "lieberkuhn crypt of large intestine" EXACT [OBOL:automatic] +xref: EMAPA:35465 +xref: FMA:63622 +xref: http://linkedlifedata.com/resource/umls/id/C1179777 +xref: MA:0001544 +xref: NCIT:C32924 +xref: UMLS:C1179777 {source="ncithesaurus:Large_Intestinal_Crypt_of_the_Lieberkuhn"} +is_a: UBERON:0001983 ! crypt of Lieberkuhn +intersection_of: UBERON:0001983 ! crypt of Lieberkuhn +intersection_of: part_of UBERON:0000059 ! large intestine +relationship: contributes_to_morphology_of UBERON:0000059 ! large intestine +relationship: part_of UBERON:0001207 ! mucosa of large intestine + +[Term] +id: UBERON:0001985 +name: corneal endothelium +def: "A monolayer of specialized, flattened, mitochondria-rich cells that lines the posterior surface of the cornea and faces the anterior chamber of the eye[WP]." [http://en.wikipedia.org/wiki/Corneal_endothelium] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "cornea endothelium" EXACT [OBOL:automatic] +synonym: "endothelium of cornea" EXACT [OBOL:automatic] +synonym: "epithelium posterius corneae" RELATED LATIN [http://en.wikipedia.org/wiki/Corneal_endothelium] +xref: CALOHA:TS-0172 +xref: Corneal:endothelium +xref: EMAPA:35935 +xref: FMA:63882 +xref: GAID:891 +xref: http://linkedlifedata.com/resource/umls/id/C0014259 +xref: http://www.snomedbrowser.com/Codes/Details/368827009 +xref: MA:0001242 +xref: MESH:D004728 +xref: NCIT:C12707 +xref: TAO:0002186 +xref: UMLS:C0014259 {source="ncithesaurus:Corneal_Endothelium"} +xref: ZFA:0001687 +is_a: UBERON:0001986 ! endothelium +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0015808 ! eye epithelium +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0000964 ! cornea +relationship: adjacent_to UBERON:0001766 ! anterior chamber of eyeball +relationship: contributes_to_morphology_of UBERON:0000964 ! cornea +relationship: part_of UBERON:0000964 ! cornea + +[Term] +id: UBERON:0001986 +name: endothelium +def: "A layer of epithelium that lines the heart, blood vessels (endothelium, vascular), lymph vessels (endothelium, lymphatic), and the serous cavities of the body[MESH]. Simple squamous epithelium which lines blood and lymphatic vessels and the heart[FMA]" [FMA:63916, https://github.com/obophenotype/uberon/issues/225, MESH:A10.272.491] +comment: The term 'endothelium' has been either restricted to the continuous cell layer of the vertebrates, as we are assuming here, or applied to all the cells able to adhere to the luminal surface of the vascular basement membrane (Casley-Smith 1980) +subset: efo_slim +subset: uberon_slim +xref: BTO:0000393 +xref: CALOHA:TS-0278 +xref: EFO:0002548 +xref: FMA:63916 +xref: GAID:520 +xref: galen:Endothelium +xref: http://linkedlifedata.com/resource/umls/id/C0014257 +xref: http://www.snomedbrowser.com/Codes/Details/27168002 +xref: MESH:D004727 +xref: NCIT:C12481 +xref: UMLS:C0014257 {source="ncithesaurus:Endothelium"} +is_a: UBERON:0000487 {source="https://github.com/obophenotype/uberon/issues/225", source="FMA-text-def"} ! simple squamous epithelium +is_a: UBERON:0012275 ! meso-epithelium + +[Term] +id: UBERON:0001987 +name: placenta +def: "organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin[GO]. The fetal portion of the placenta is known as the villous chorion. The maternal portion is known as the decidua basalis. The two portions are held together by anchoring villi that are anchored to the decidua basalis by the cytotrophoblastic shell." [http://en.wikipedia.org/wiki/Placenta, http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] +comment: Marsupials possess only a rudimentary yolk-type placenta, with reduced nutrient and oxygen exchanging capabilities. +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "allantoic placenta" EXACT [ISBN:0073040584] +synonym: "eutherian placenta" EXACT [] +xref: BTO:0001078 +xref: CALOHA:TS-0799 +xref: EFO:0001407 +xref: EMAPA:35689 +xref: EV:0100119 +xref: FMA:63934 +xref: GAID:379 +xref: http://en.wikipedia.org/wiki/Placenta +xref: http://linkedlifedata.com/resource/umls/id/C0032043 +xref: http://www.snomedbrowser.com/Codes/Details/181455002 +xref: MA:0000386 +xref: MAT:0000279 +xref: MESH:A16.759 +xref: MIAA:0000279 +xref: NCIT:C13272 +xref: OpenCyc:Mx4rvv4zZ5wpEbGdrcN5Y29ycA +xref: UMLS:C0032043 {source="ncithesaurus:Placenta"} +xref: VHOG:0001266 +is_a: UBERON:0000062 ! organ +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: develops_from UBERON:0000995 {source="ISBN:0073040584"} ! uterus +relationship: develops_from UBERON:0003124 {source="Wikipedia"} ! chorion membrane +relationship: develops_from UBERON:0004340 {source="ISBN:0073040584"} ! allantois +relationship: part_of UBERON:0000474 ! female reproductive system +relationship: part_of UBERON:0016887 ! entire extraembryonic component + +[Term] +id: UBERON:0001988 +name: feces +def: "Portion of semisolid bodily waste discharged through the anus[MW,modified]" [http://en.wikipedia.org/wiki/Feces, http://www.merriam-webster.com/dictionary/feces] +subset: pheno_slim +subset: uberon_slim +synonym: "cow dung" NARROW [http://en.wikipedia.org/wiki/Cow_dung] +synonym: "cow pat" NARROW [http://en.wikipedia.org/wiki/Cow_dung] +synonym: "droppings" RELATED [] +synonym: "dung" NARROW [] +synonym: "excrement" RELATED [BTO:0000440] +synonym: "excreta" BROAD [] +synonym: "faeces" EXACT [] +synonym: "fecal material" EXACT [] +synonym: "fecal matter" EXACT [] +synonym: "fewmet" NARROW [http://en.wikipedia.org/wiki/Fewmet] +synonym: "frass" NARROW [http://en.wikipedia.org/wiki/Frass] +synonym: "guano" NARROW [http://en.wikipedia.org/wiki/Guano] +synonym: "matières fécales@fr" EXACT [] +synonym: "merde@fr" EXACT [] +synonym: "ordure" RELATED [] +synonym: "partie de la merde@fr" EXACT [] +synonym: "piece of shit" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/23285307] +synonym: "porción de mierda@es" EXACT [] +synonym: "portion of dung" NARROW [] +synonym: "portion of excrement" EXACT [] +synonym: "portion of faeces" EXACT [] +synonym: "portion of fecal material" EXACT [] +synonym: "portion of fecal matter" EXACT [] +synonym: "portion of feces" EXACT [] +synonym: "portion of guano" NARROW [] +synonym: "portion of scat" NARROW [] +synonym: "portionem cacas" EXACT LATIN [] +synonym: "scat" NARROW [] +synonym: "spoor" RELATED [] +synonym: "spraint" NARROW [http://en.wikipedia.org/wiki/Spraint] +synonym: "stool" EXACT [] +synonym: "teil der fäkalien@de" EXACT [] +xref: BTO:0000440 +xref: CALOHA:TS-2345 +xref: ENVO:00002003 +xref: FMA:64183 +xref: GAID:1199 +xref: galen:Feces +xref: http://en.wikipedia.org/wiki/Feces +xref: http://linkedlifedata.com/resource/umls/id/C0015733 +xref: MA:0002509 +xref: MAT:0000053 +xref: MESH:D005243 +xref: MIAA:0000053 +xref: NCIT:C13234 +xref: OpenCyc:Mx4rvVjJMZwpEbGdrcN5Y29ycA +xref: UMLS:C0015733 {source="ncithesaurus:Feces"} +is_a: UBERON:0000174 ! excreta + +[Term] +id: UBERON:0001989 +name: superior cervical ganglion +def: "Trunk ganglion which is bilaterally paired and located at the anterior end of the sympathetic ganglion chain." [http://en.wikipedia.org/wiki/Superior_cervical_ganglion, ZFIN:curator] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "ganglion cervicale superius" RELATED [BTO:0001325] +synonym: "ganglion cervicale superius" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_cervical_ganglion] +synonym: "SCG" RELATED ABBREVIATION [ZFA:0001572] +synonym: "superior cervical sympathetic ganglion" EXACT [] +synonym: "superior sympathetic cervical ganglion" RELATED [] +xref: BAMS:GSC +xref: BAMS:SCGn +xref: BTO:0001325 +xref: EFO:0001945 +xref: EHDAA:8943 +xref: EMAPA:18441 +xref: FMA:6467 +xref: GAID:712 +xref: http://en.wikipedia.org/wiki/Superior_cervical_ganglion +xref: http://linkedlifedata.com/resource/umls/id/C0206257 +xref: http://www.snomedbrowser.com/Codes/Details/279278002 +xref: MA:0001156 +xref: MESH:D017783 +xref: NCIT:C92213 +xref: RETIRED_EHDAA2:0001946 +xref: TAO:0001572 +xref: UMLS:C0206257 {source="ncithesaurus:Superior_Cervical_Ganglion"} +xref: ZFA:0001572 +is_a: UBERON:0001991 ! cervical ganglion + +[Term] +id: UBERON:0001990 +name: middle cervical ganglion +def: "the small ganglion located at the level of the cricoid cartilage of the laryngeal wall" [ISBN:0-683-40008-8, MP:0001016] +subset: pheno_slim +subset: uberon_slim +synonym: "ganglion cervicale medium" RELATED LATIN [http://en.wikipedia.org/wiki/Middle_cervical_ganglion] +synonym: "ganglion cervicale medium" RELATED [BTO:0000359] +synonym: "middle cervical sympathetic ganglion" EXACT [] +xref: BAMS:GMC +xref: BTO:0000359 +xref: EHDAA:8941 +xref: EMAPA:18440 +xref: FMA:6468 +xref: http://en.wikipedia.org/wiki/Middle_cervical_ganglion +xref: http://linkedlifedata.com/resource/umls/id/C0228999 +xref: http://www.snomedbrowser.com/Codes/Details/279279005 +xref: MA:0001155 +xref: NCIT:C92212 +xref: RETIRED_EHDAA2:0001180 +xref: UMLS:C0228999 {source="ncithesaurus:Middle_Cervical_Ganglion"} +is_a: UBERON:0001991 ! cervical ganglion + +[Term] +id: UBERON:0001991 +name: cervical ganglion +def: "The cervical ganglia are paravertebral ganglia of the sympathetic nervous system. They consist of three paravertebral ganglia: superior cervical ganglion middle cervical ganglion inferior cervical ganglion. The inferior ganglion may be fused with the first thoracic ganglion to form a single structure, the stellate ganglion. Nerves emerging from cervical sympathetic ganglia contribute to the cardiac plexus, among other things. [WP,unvetted]." [http://en.wikipedia.org/wiki/Cervical_ganglion] +subset: uberon_slim +synonym: "cervical sympathetic ganglion" EXACT [] +xref: BTO:0000113 +xref: Cervical:ganglion +xref: EMAPA:18438 +xref: FMA:6470 +xref: http://www.snomedbrowser.com/Codes/Details/181100007 +xref: MA:0001153 +is_a: UBERON:0001807 ! paravertebral ganglion + +[Term] +id: UBERON:0001992 +name: papillary layer of dermis +def: "The upper layer of the dermis beneath the epidermis, composed of dense irregular connective tissue[ncit,modified]." [ncithesaurus:Papillary_Dermis] +subset: pheno_slim +subset: uberon_slim +synonym: "corpus papillary" EXACT [MP:0009545] +synonym: "dermal papillary layer" RELATED [EMAPA:35282] +synonym: "dermis papillary layer" EXACT [MA:0000800] +synonym: "papillary dermis" EXACT [] +synonym: "papillary layer" EXACT [MP:0009545] +synonym: "papillary layer of dermis" EXACT [FMA:64776] +synonym: "stratum papillare" EXACT [MP:0009545] +synonym: "stratum papillare" RELATED LATIN [http://en.wikipedia.org/wiki/Papillary_dermis] +synonym: "stratum papillare (dermis)" EXACT LATIN [FMA:64776, FMA:TA] +synonym: "stratum papillare corii" EXACT [MP:0009545] +synonym: "stratum papillare dermis" EXACT LATIN [FMA:64776, FMA:TA] +synonym: "superficial dermis" EXACT [MP:0009545] +synonym: "superficial dermis" EXACT [MA:0000802] +xref: EMAPA:35282 +xref: FMA:64776 +xref: http://linkedlifedata.com/resource/umls/id/C0221930 +xref: http://linkedlifedata.com/resource/umls/id/C0682598 +xref: MA:0000800 +xref: MA:0000802 +xref: NCIT:C33630 +xref: NCIT:C94819 +xref: Papillary:dermis +xref: UMLS:C0221930 {source="ncithesaurus:Stratum_Papillare"} +xref: UMLS:C0682598 {source="ncithesaurus:Papillary_Dermis"} +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0013754 ! integumentary system layer +relationship: composed_primarily_of UBERON:0006815 {source="WP"} ! areolar connective tissue +relationship: composed_primarily_of UBERON:0011822 {source="FMA-text"} ! dense irregular connective tissue +relationship: part_of UBERON:0002067 ! dermis + +[Term] +id: UBERON:0001993 +name: reticular layer of dermis +def: "The thicker, deeper layer of the dermis, comprised of criss-crossing collagen fibers that form a strong elastic network and also containing blood and lymph vessels, nerves and nerve endings, and hair follicles" [ISBN:0-683-40008-8, MP:0005081] +subset: pheno_slim +subset: uberon_slim +synonym: "dermal reticular layer" RELATED [EMAPA:35283] +synonym: "dermis reticular layer" EXACT [] +synonym: "dermis stratum reticulare" EXACT [] +synonym: "reticular dermis" EXACT [] +synonym: "stratum reticulare" EXACT [http://en.wikipedia.org/wiki/Reticular_dermis] +synonym: "stratum reticulare" RELATED LATIN [http://en.wikipedia.org/wiki/Reticular_dermis] +synonym: "stratum reticulare dermis" EXACT LATIN [FMA:64778, FMA:TA] +xref: EMAPA:35283 +xref: FMA:64778 +xref: http://linkedlifedata.com/resource/umls/id/C0682599 +xref: http://linkedlifedata.com/resource/umls/id/C1514988 +xref: MA:0000801 +xref: NCIT:C33631 +xref: NCIT:C94818 +xref: Reticular:dermis +xref: UMLS:C0682599 {source="ncithesaurus:Reticular_Dermis"} +xref: UMLS:C1514988 {source="ncithesaurus:Stratum_Reticulare"} +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0013754 ! integumentary system layer +relationship: contributes_to_morphology_of UBERON:0000014 ! zone of skin +relationship: deep_to UBERON:0001992 ! papillary layer of dermis +relationship: part_of UBERON:0002067 ! dermis +relationship: part_of UBERON:0008877 {source="FMA"} ! epidermal-dermal junction + +[Term] +id: UBERON:0001994 +name: hyaline cartilage tissue +def: "Cartilage tissue primarily composed of type II collagen (thin fibrils) and a glassy appearance." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000094] +subset: pheno_slim +subset: uberon_slim +synonym: "chondroid cartilage" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "hyaline cartilage" EXACT [MA:0000109] +xref: EMAPA:35414 +xref: FMA:64783 +xref: http://linkedlifedata.com/resource/umls/id/C0225362 +xref: http://www.snomedbrowser.com/Codes/Details/39298000 +xref: Hyaline:cartilage +xref: MA:0000109 +xref: NCIT:C32746 +xref: UMLS:C0225362 {source="ncithesaurus:Hyaline_Cartilage"} +xref: VSAO:0000094 +xref: XAO:0004029 +is_a: UBERON:0002418 {source="FMA"} ! cartilage tissue + +[Term] +id: UBERON:0001995 +name: fibrocartilage +def: "Cartilage tissue intermediate between hyaline cartilage and dense connective tissue; contains of abundant collagen fibers; chondrocytes often arranged in columns." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000103] +comment: The white fibrocartilages admit of arrangement into four groups-interarticular, connecting, circumferential, and stratiform -- WP. EDITOR NOTE: TODO add mineralized +subset: pheno_slim +subset: uberon_slim +synonym: "fibrocartilage tissue" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "stratified cartilage tissue" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: FMA:64784 +xref: galen:Fibrocartilage +xref: http://en.wikipedia.org/wiki/Fibrocartilage +xref: http://linkedlifedata.com/resource/umls/id/C0684077 +xref: http://www.snomedbrowser.com/Codes/Details/91685003 +xref: MA:0000108 +xref: NCIT:C32599 +xref: UMLS:C0684077 {source="ncithesaurus:Fibrocartilage"} +xref: VSAO:0000103 +xref: XAO:0004028 +is_a: UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0001996 +name: elastic cartilage tissue +def: "Cartilage tissue that is flexible and contains abundant elastic fibers." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000091] +subset: pheno_slim +subset: uberon_slim +synonym: "elastic cartilage" EXACT [MA:0000107] +synonym: "elastic cartilage tissue" EXACT [VSAO:0000091] +synonym: "reticular cartilage" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "yellow cartilage" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "yellow elastic cartilage" EXACT [http://en.wikipedia.org/wiki/Elastic_cartilage] +synonym: "yellow elastic cartilage tissue" EXACT [] +xref: Elastic:cartilage +xref: FMA:64785 +xref: http://linkedlifedata.com/resource/umls/id/C0682559 +xref: MA:0000107 +xref: MA:0000485 +xref: NCIT:C32494 +xref: UMLS:C0682559 {source="ncithesaurus:Elastic_Cartilage"} +xref: VSAO:0000091 +xref: XAO:0004197 +is_a: UBERON:0011589 {source="VSAO"} ! non-mineralized cartilage tissue +relationship: develops_from UBERON:0005863 {source="VSAO"} ! cartilaginous condensation + +[Term] +id: UBERON:0001997 +name: olfactory epithelium +alt_id: UBERON:0004853 +def: "A sensory epithelium inside the nasal cavity that is responsible for detecting odors[WP]." [http://en.wikipedia.org/wiki/Olfactory_epithelium] +comment: Genes: V1Rs, Trpc2 present in lamprey +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "main olfactory epithelium" EXACT [NCBIBook:NBK55971] +synonym: "MOE" RELATED ABBREVIATION [NCBIBook:NBK55971] +synonym: "nasal cavity olfactory epithelium" EXACT [MA:0001325] +synonym: "nasal epithelium" RELATED [] +synonym: "nasal sensory epithelium" RELATED [] +synonym: "olfactory membrane" EXACT [BIRNLEX:2703] +synonym: "olfactory sensory epithelium" EXACT [] +synonym: "pseudostratified main olfactory epithelium" RELATED [http://www.ncbi.nlm.nih.gov/books/NBK55971/] +synonym: "sensory olfactory epithelium" EXACT [] +xref: AAO:0010158 +xref: BIRNLEX:2703 +xref: BTO:0000108 +xref: CALOHA:TS-0703 +xref: EFO:0001972 +xref: EHDAA2:0001228 +xref: EHDAA:4774 +xref: EMAPA:17606 +xref: FMA:64803 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1900 {source="BIRNLEX:2703"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1900 +xref: http://linkedlifedata.com/resource/umls/id/C0599332 +xref: http://www.snomedbrowser.com/Codes/Details/37623003 +xref: MA:0001325 +xref: MAT:0000445 +xref: NCIT:C33203 +xref: Olfactory:epithelium +xref: TAO:0000554 +xref: UMLS:C0599332 {source="BIRNLEX:2703"} +xref: UMLS:C0599332 {source="ncithesaurus:Olfactory_Epithelium"} +xref: VHOG:0000985 +xref: ZFA:0000554 +is_a: UBERON:0005384 ! nasal cavity epithelium +is_a: UBERON:0006934 ! sensory epithelium +intersection_of: UBERON:0006934 ! sensory epithelium +intersection_of: part_of UBERON:0005386 ! olfactory segment of nasal mucosa +relationship: contributes_to_morphology_of UBERON:0005725 ! olfactory system +relationship: develops_from UBERON:2001431 ! primitive olfactory epithelium +relationship: immediate_transformation_of UBERON:2001431 ! primitive olfactory epithelium +relationship: part_of UBERON:0000012 {source="NIFSTD"} ! somatic nervous system +relationship: part_of UBERON:0005386 ! olfactory segment of nasal mucosa + +[Term] +id: UBERON:0001998 +name: sternocostal joint +def: "Arthrodial joints, with the exception of the first, in which the cartilage is directly united with the sternum, and which is, therefore, a synarthrodial articulation." [http://en.wikipedia.org/wiki/Sternocostal_joints] +synonym: "articulatio sternocostalis" EXACT [FMA:7954] +synonym: "articulationes sternocostales" RELATED LATIN [http://en.wikipedia.org/wiki/Sternocostal_joints] +synonym: "costo sternal joint" EXACT [] +synonym: "costosternal joint" EXACT [] +synonym: "sternochondral joint" EXACT [FMA:7954] +synonym: "sternocostal synovial joint" EXACT [FMA:7954] +synonym: "synovial sternocostal joint" EXACT [FMA:7954] +xref: FMA:7954 +xref: GAID:271 +xref: http://linkedlifedata.com/resource/umls/id/C1305902 +xref: http://www.snomedbrowser.com/Codes/Details/361860002 +xref: MA:0001512 +xref: MESH:D013248 +xref: NCIT:C33617 +xref: Sternocostal:joints +xref: UMLS:C1305902 {source="ncithesaurus:Sternocostal_Joint"} +is_a: UBERON:0002001 {source="MA"} ! joint of rib +is_a: UBERON:0002217 {source="FMA"} ! synovial joint +relationship: connects UBERON:0000975 ! sternum + +[Term] +id: UBERON:0001999 +name: iliopsoas +def: "Anatomical cluster consisting of the iliacus and the psoas major[WP]." [http://en.wikipedia.org/wiki/Iliopsoas] +subset: uberon_slim +synonym: "Hyrtl's muscle" EXACT [] +synonym: "ilio-psoas" RELATED [VHOG:0001005] +synonym: "iliopsoas muscle" EXACT [BTO:0000621] +synonym: "illopsoas" EXACT [VHOG:0001005] +synonym: "musculus iliopsoas" RELATED LATIN [http://en.wikipedia.org/wiki/Iliopsoas] +xref: BTO:0000621 +xref: EHDAA2:0000812 +xref: EHDAA:9458 +xref: EMAPA:18520 +xref: FMA:64918 +xref: http://en.wikipedia.org/wiki/Iliopsoas +xref: http://linkedlifedata.com/resource/umls/id/C0224417 +xref: http://www.snomedbrowser.com/Codes/Details/181668001 +xref: MA:0002321 +xref: NCIT:C32764 +xref: UMLS:C0224417 {source="ncithesaurus:Iliopsoas_Muscle"} +xref: VHOG:0001005 +is_a: UBERON:0000061 ! anatomical structure +relationship: has_muscle_antagonist UBERON:0001370 {source="dbpedia"} ! gluteus maximus +relationship: has_muscle_antagonist UBERON:0002463 ! muscle of posterior compartment of hindlimb stylopod +relationship: has_muscle_insertion UBERON:0002504 {notes="lesser trochanter of femur", source="dbpedia"} ! lesser trochanter +relationship: has_muscle_origin UBERON:0001130 {source="dbpedia"} ! vertebral column +relationship: innervated_by UBERON:0001267 {source="dbpedia"} ! femoral nerve +relationship: innervated_by UBERON:0009624 {source="dbpedia"} ! lumbar nerve +relationship: part_of UBERON:0001015 ! musculature + +[Term] +id: UBERON:0002000 +name: gluteal muscle +def: "On of the muscles that make up the buttocks: the gluteus maximus muscle, gluteus medius muscle and gluteus minimus muscle." [http://en.wikipedia.org/wiki/Gluteal_muscles] +subset: pheno_slim +subset: uberon_slim +synonym: "gluteus" RELATED [BTO:0000531] +synonym: "gluteus muscle" RELATED [] +xref: BTO:0000531 +xref: EHDAA2:0000715 +xref: EMAPA:18186 +xref: FMA:64922 +xref: Gluteal:muscles +xref: http://linkedlifedata.com/resource/umls/id/C1744702 +xref: MA:0000535 +xref: NCIT:C78205 +xref: UMLS:C1744702 {source="ncithesaurus:Gluteal_Muscle"} +xref: VHOG:0001316 +is_a: UBERON:0001497 ! muscle of pelvic girdle +intersection_of: UBERON:0001497 ! muscle of pelvic girdle +intersection_of: part_of UBERON:0013691 ! buttock +relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group +relationship: part_of UBERON:0013691 ! buttock + +[Term] +id: UBERON:0002001 +name: joint of rib +def: "Any joint that connects a rib to another structure (or another rib). Examples: costochondral, costovertebral, interchondral, sternocostal joints." [https://orcid.org/0000-0002-6601-2165] +synonym: "rib joint" EXACT [] +xref: FMA_RETIRED:64994 +xref: http://linkedlifedata.com/resource/umls/id/C1261194 +xref: http://www.snomedbrowser.com/Codes/Details/263314001 +xref: MA:0001508 +xref: NCIT:C49575 +xref: UMLS:C1261194 {source="ncithesaurus:Joint_of_the_Rib"} +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0002228 ! rib +relationship: connects UBERON:0002228 ! rib +relationship: part_of UBERON:0014478 {source="cjm"} ! rib skeletal system + +[Term] +id: UBERON:0002002 +name: interchondral joint +def: "Interchondral Articulations (articulations of the cartilages of the ribs with each other). The contiguous borders of the sixth, seventh, and eighth, and sometimes those of the ninth and tenth, costal cartilages articulate with each other by small, smooth, oblong facets. Each articulation is enclosed in a thin articular capsule, lined by synovial membrane and strengthened laterally and medially by ligamentous fibers which pass from one cartilage to the other. Sometimes the fifth costal cartilages, more rarely the ninth and tenth, articulate by their lower borders with the adjoining cartilages by small oval facets; more frequently the connection is by a few ligamentous fibers." [http://en.wikipedia.org/wiki/Interchondral_articulations] +synonym: "articulatio interchondralis" EXACT [FMA:7955] +synonym: "articulationes interchondrales" EXACT LATIN [FMA:71378, FMA:TA] +synonym: "interchondral articulation" EXACT [http://en.wikipedia.org/wiki/Interchondral_articulations] +synonym: "interchondral joint of 9th and 10th ribs" RELATED [FMA:10425] +synonym: "interchondral joints" EXACT [FMA:71378] +synonym: "interchondral joints set" EXACT [FMA:71378] +synonym: "interchondral syndesmosis" RELATED [FMA:10425] +synonym: "non-synovial interchondral joint" RELATED [FMA:10425] +synonym: "synovial interchondral joint" EXACT [FMA:7955] +xref: FMA:10425 +xref: http://www.snomedbrowser.com/Codes/Details/303101003 +xref: Interchondral:articulations +xref: MA:0001511 +is_a: UBERON:0002001 {source="MA"} ! joint of rib +is_a: UBERON:0002210 {source="FMA"} ! syndesmosis +relationship: connects UBERON:0002228 {minCardinality="2", maxCardinality="2"} ! rib + +[Term] +id: UBERON:0002003 +name: obsolete peripheral nerve +alt_id: UBERON:0003377 +def: "A cable-like bundle of peripheral axons (the long, slender projections of neurons). A nerve provides a common pathway for the electrochemical nerve impulses that are transmitted along each of the axons. Nerves are found only in the peripheral nervous system. In the central nervous system, the analogous structures are known as tracts[WP]." [http://en.wikipedia.org/wiki/Peripheral_nerve] +comment: See https://github.com/obophenotype/mouse-anatomy-ontology/issues/6 +subset: major_organ +subset: uberon_slim +synonym: "nerve part of peripheral nervous system" EXACT [BIRNLEX:1615] +synonym: "peripheral nerve tree" EXACT [FMA:65239] +is_obsolete: true +replaced_by: UBERON:0001021 + +[Term] +id: UBERON:0002004 +name: trunk of sciatic nerve +synonym: "sciatic nerve trunk" EXACT [] +synonym: "sciatic neural trunk" EXACT [] +xref: EMAPA:18577 +xref: FMA:65507 +xref: MA:0001178 +is_a: UBERON:0002464 ! nerve trunk +intersection_of: UBERON:0002464 ! nerve trunk +intersection_of: part_of UBERON:0001322 ! sciatic nerve +relationship: part_of UBERON:0001322 ! sciatic nerve + +[Term] +id: UBERON:0002005 +name: enteric nervous system +def: "The enteric nervous system is composed of two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gall bladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation[GO]." [GO:0048484] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "enteric PNS" EXACT [EFO:0000895] +synonym: "PNS - enteric" EXACT [EFO:0000895] +xref: BAMS:ENS +xref: BIRNLEX:1166 +xref: BTO:0002506 +xref: CALOHA:TS-2093 +xref: EFO:0000895 +xref: EHDAA2:0004202 +xref: EMAPA:26922 +xref: FMA:66070 +xref: GAID:799 +xref: http://en.wikipedia.org/wiki/Enteric_nervous_system +xref: http://linkedlifedata.com/resource/umls/id/C0206111 +xref: MA:0000222 +xref: MAT:0000102 +xref: MESH:D017615 +xref: MIAA:0000102 +xref: TAO:0001155 +xref: UMLS:C0206111 {source="BIRNLEX:1166"} +xref: ZFA:0001155 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision +relationship: contributes_to_morphology_of UBERON:0002410 ! autonomic nervous system +relationship: develops_from UBERON:0005428 {source="https://github.com/obophenotype/uberon/wiki/The-neural-crest", source="Wikipedia", source="ZFA"} ! vagal neural crest +relationship: part_of UBERON:0002410 {source="FMA", source="MA", source="NIF", source="ZFA-isa-changed"} ! autonomic nervous system + +[Term] +id: UBERON:0002006 +name: cortex of lymph node +def: "Peripheral portion of the lymph node, underneath the capsule[WP]." [http://en.wikipedia.org/wiki/Cortex_of_lymph_node] +subset: pheno_slim +subset: uberon_slim +synonym: "cortex nodi lymphoidei" RELATED LATIN [http://en.wikipedia.org/wiki/Cortex_of_lymph_node] +synonym: "lymph node cortex" EXACT [] +xref: EMAPA:35525 +xref: FMA:66253 +xref: http://en.wikipedia.org/wiki/Cortex_of_lymph_node +xref: http://linkedlifedata.com/resource/umls/id/C0933402 +xref: MA:0000740 +xref: NCIT:C33029 +xref: UMLS:C0933402 {source="ncithesaurus:Lymph_Node_Cortex"} +is_a: UBERON:0001851 ! cortex +intersection_of: UBERON:0001851 ! cortex +intersection_of: part_of UBERON:0000029 ! lymph node +relationship: adjacent_to UBERON:0002194 ! capsule of lymph node +relationship: part_of UBERON:0000029 ! lymph node + +[Term] +id: UBERON:0002007 +name: medulla of lymph node +def: "The mdeullary portion of the lymph node, which contains large blood vessels, sinuses and medullary cords that contain antibody-secreting plasma cells." [http://en.wikipedia.org/wiki/Lymph_node#Medulla, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "lymph node medulla" EXACT [] +synonym: "medulla nodi lymphoidei" RELATED LATIN [http://en.wikipedia.org/wiki/Medulla_of_lymph_node] +xref: EMAPA:35529 +xref: FMA:66254 +xref: MA:0000745 +is_a: UBERON:0000958 ! medulla of organ +intersection_of: UBERON:0000958 ! medulla of organ +intersection_of: part_of UBERON:0000029 ! lymph node +relationship: has_part UBERON:0009744 ! lymph node medullary sinus +relationship: has_part UBERON:0009745 ! lymph node medullary cord +relationship: part_of UBERON:0000029 ! lymph node + +[Term] +id: UBERON:0002008 +name: cardiac nerve plexus +def: "A plexus of nerves situated at the base of the heart that innervate the heart." [http://en.wikipedia.org/wiki/Cardiac_plexus] +subset: uberon_slim +synonym: "autonomic nerve plexus of heart" EXACT [OBOL:automatic] +synonym: "autonomic plexus of heart" EXACT [OBOL:automatic] +synonym: "cardiac plexus" EXACT [] +synonym: "heart autonomic nerve plexus" EXACT [OBOL:automatic] +synonym: "heart autonomic plexus" EXACT [OBOL:automatic] +synonym: "plexus cardiacus" EXACT LATIN [http://en.wikipedia.org/wiki/Cardiac_plexus] +xref: Cardiac:plexus +xref: EMAPA:37460 {source="MA:th"} +xref: FMA:6628 +xref: http://linkedlifedata.com/resource/umls/id/C0459528 +xref: http://www.snomedbrowser.com/Codes/Details/280511002 +xref: MA:0001138 +xref: NCIT:C52833 +xref: UMLS:C0459528 {source="ncithesaurus:Cardiac_Nerve_Plexus"} +is_a: UBERON:0001816 ! autonomic nerve plexus +intersection_of: UBERON:0001816 ! autonomic nerve plexus +intersection_of: innervates UBERON:0000948 ! heart +relationship: innervates UBERON:0000948 ! heart + +[Term] +id: UBERON:0002009 +name: pulmonary nerve plexus +def: "The pulmonary plexus is an autonomic plexus formed from pulmonary branches of vagus nerve and the sympathetic trunk that supplies the Bronchial tree. [WP,modified]." [http://en.wikipedia.org/wiki/Pulmonary_plexus] +subset: uberon_slim +synonym: "plexus pulmonalis" EXACT LATIN [FMA:6629, FMA:TA] +synonym: "plexus pulmonalis" RELATED LATIN [http://en.wikipedia.org/wiki/Pulmonary_plexus] +synonym: "pulmonary plexus" EXACT [FMA:6629] +xref: EMAPA:37462 {source="MA:th"} +xref: FMA:6629 +xref: http://www.snomedbrowser.com/Codes/Details/280512009 +xref: MA:0001143 +xref: Pulmonary:plexus +is_a: UBERON:0001816 ! autonomic nerve plexus +intersection_of: UBERON:0001816 ! autonomic nerve plexus +intersection_of: innervates UBERON:3010524 ! bronchial tube +relationship: branching_part_of UBERON:0001759 ! vagus nerve +relationship: innervates UBERON:3010524 ! bronchial tube +relationship: located_in UBERON:0003728 {source="FMA"} ! mediastinum +relationship: part_of UBERON:0001759 ! vagus nerve + +[Term] +id: UBERON:0002010 +name: celiac nerve plexus +def: "A complex network of nerves located in the abdomen behind the stomach. The celiac plexus is located near where the celiac trunk, superior mesenteric artery, and renal arteries branch from the abdominal aorta. It is behind the stomach and the omental bursa and in front of the crura of the diaphragm, on the level of the first lumbar vertebra, L1. The plexus is formed (in part) by the greater and lesser splanchnic nerves of both sides, and also parts of the right vagus nerve. The celiac plexus proper consists of the celiac ganglia with a network of interconnecting fibers. The aorticorenal ganglia are often considered to be part of the celiac ganglia, and thus, part of the plexus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Celiac_plexus] +subset: uberon_slim +synonym: "celiac plexus" EXACT [] +synonym: "coeliac nerve plexus" RELATED [] +synonym: "coeliac plexus" EXACT [] +synonym: "plexus coeliacus" EXACT LATIN [FMA:6630, FMA:TA] +synonym: "plexus coeliacus" RELATED LATIN [http://en.wikipedia.org/wiki/Celiac_plexus] +synonym: "plexus nervosus coeliacus" EXACT LATIN [FMA:6630, FMA:TA] +synonym: "solar plexus" RELATED [MESH:A08.800.050.050.150] +xref: Celiac:plexus +xref: EMAPA:37461 {source="MA:th"} +xref: FMA:6630 +xref: GAID:796 +xref: http://www.snomedbrowser.com/Codes/Details/362494009 +xref: MA:0001139 +xref: MESH:D002447 +is_a: UBERON:0001816 ! autonomic nerve plexus +relationship: part_of UBERON:0000916 ! abdomen + +[Term] +id: UBERON:0002011 +name: thoracodorsal artery +def: "The thoracodorsal artery is a branch of the subscapular artery. It travels inferiorly with the thoracodorsal nerve and supplies the latissimus dorsi. [WP,unvetted]." [http://en.wikipedia.org/wiki/Thoracodorsal_artery] +subset: uberon_slim +synonym: "arteria thoracodorsalis" RELATED LATIN [http://en.wikipedia.org/wiki/Thoracodorsal_artery] +xref: EMAPA:37129 {source="MA:th"} +xref: FMA:66320 +xref: http://linkedlifedata.com/resource/umls/id/C0933449 +xref: MA:0002065 +xref: NCIT:C53018 +xref: Thoracodorsal:artery +xref: UMLS:C0933449 {source="ncithesaurus:Thoracodorsal_Artery"} +is_a: UBERON:0001637 ! artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0001112 ! latissimus dorsi muscle +relationship: supplies UBERON:0001112 ! latissimus dorsi muscle + +[Term] +id: UBERON:0002012 +name: pulmonary artery +def: "An artery that carries deoxygenated blood from heart to the lungs. They are the only arteries (other than umbilical arteries in the fetus) that carry deoxygenated blood.." [http://en.wikipedia.org/wiki/Pulmonary_artery, http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "arteria pulmonalis" RELATED LATIN [http://en.wikipedia.org/wiki/Pulmonary_artery] +synonym: "pulmonary arterial subtree" RELATED [FMA:66326] +synonym: "pulmonary arterial tree" EXACT [FMA:66326] +synonym: "pulmonary arterial tree organ part" EXACT [FMA:66326] +synonym: "truncus pulmonalis" RELATED LATIN [http://en.wikipedia.org/wiki/Pulmonary_artery] +xref: AAO:0010221 +xref: BTO:0000778 +xref: CALOHA:TS-0839 +xref: EFO:0001399 +xref: EHDAA2:0001575 +xref: EHDAA:4351 +xref: EMAPA:17008 +xref: FMA:66326 +xref: GAID:505 +xref: galen:PulmonaryArtery +xref: http://linkedlifedata.com/resource/umls/id/C0034052 +xref: http://www.snomedbrowser.com/Codes/Details/181380003 +xref: MA:0002031 +xref: MESH:D011651 +xref: NCIT:C12774 +xref: OpenCyc:Mx4rvVjbIpwpEbGdrcN5Y29ycA +xref: Pulmonary:artery +xref: UMLS:C0034052 {source="ncithesaurus:Pulmonary_Artery"} +xref: VHOG:0000982 +xref: XAO:0004162 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0013768 ! great vessel of heart +intersection_of: UBERON:0001637 ! artery +intersection_of: part_of UBERON:0008886 ! pulmonary vascular system +intersection_of: supplies UBERON:0002048 ! lung +disjoint_from: UBERON:0004573 ! systemic artery +relationship: continuous_with UBERON:0002333 ! pulmonary trunk +relationship: develops_from UBERON:0002061 {source="Wikipedia"} ! truncus arteriosus +relationship: develops_from UBERON:0003123 {source="EHDAA2", source="XAO"} ! pharyngeal arch artery 6 +relationship: develops_from UBERON:0005339 {source="EHDAA2"} ! outflow tract pulmonary component +relationship: part_of UBERON:0008886 ! pulmonary vascular system +relationship: supplies UBERON:0002048 ! lung + +[Term] +id: UBERON:0002013 +name: superior hypogastric nerve plexus +def: "The superior hypogastric plexus (in older texts, hypogastric plexus or presacral nerve) is a plexus of nerves situated on the vertebral bodies below the bifurcation of the aorta. [WP,unvetted]." [http://en.wikipedia.org/wiki/Superior_hypogastric_plexus] +subset: uberon_slim +synonym: "hypogastric plexus" RELATED [] +synonym: "nervus presacralis" EXACT LATIN [FMA:6642, FMA:TA] +synonym: "plexus hypogastricus inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_hypogastric_plexus] +synonym: "plexus hypogastricus superior" EXACT LATIN [FMA:6642, FMA:TA] +synonym: "presacral nerve" EXACT [] +synonym: "superior hypogastric plexus" EXACT [] +xref: EMAPA:19274 +xref: FMA:6642 +xref: http://en.wikipedia.org/wiki/Superior_hypogastric_plexus +xref: http://www.snomedbrowser.com/Codes/Details/244484008 +xref: MA:0001142 +is_a: UBERON:0001816 ! autonomic nerve plexus +relationship: adjacent_to UBERON:0001075 ! bony vertebral centrum + +[Term] +id: UBERON:0002014 +name: inferior hypogastric nerve plexus +def: "The inferior hypogastric plexus (pelvic plexus in some texts) is a plexus of nerves that supplies the viscera of the pelvic cavity. The inferior hypogastric plexus is a paired structure, with each situated on the side of the rectum in the male, and at the sides of the rectum and vagina in the female. [WP,unvetted]." [http://en.wikipedia.org/wiki/Inferior_hypogastric_plexus] +subset: uberon_slim +synonym: "inferior hypogastric plexus" EXACT [] +synonym: "pelvic nerve plexus" EXACT [] +synonym: "pelvic plexus" EXACT [] +synonym: "plexus hypogastricus inferior" EXACT LATIN [FMA:6643, FMA:TA] +synonym: "plexus hypogastricus inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_hypogastric_plexus] +synonym: "plexus nervosus hypogastricus inferior" EXACT LATIN [FMA:6643, FMA:TA] +synonym: "plexus nervosus pelvicus" EXACT LATIN [FMA:6643, FMA:TA] +synonym: "plexus pelvicus" EXACT LATIN [FMA:6643, FMA:TA] +xref: EMAPA:19275 +xref: FMA:6643 +xref: http://en.wikipedia.org/wiki/Inferior_hypogastric_plexus +xref: http://linkedlifedata.com/resource/umls/id/C0205797 +xref: http://www.snomedbrowser.com/Codes/Details/192608000 +xref: MA:0001141 +xref: NCIT:C52721 +xref: UMLS:C0205797 {source="ncithesaurus:Inferior_Hypogastric_Nerve_Plexus"} +is_a: UBERON:0001816 ! autonomic nerve plexus + +[Term] +id: UBERON:0002015 +name: kidney capsule +def: "the tough fibrous layer surrounding the kidney which is covered in a thick layer of perirenal adipose tissue that functions to provide some protection from trauma and damage" [MGI:anna, MP:0011383] +subset: pheno_slim +subset: uberon_slim +synonym: "capsula fibrosa renis" EXACT LATIN [FMA:66610, FMA:TA] +synonym: "capsule of kidney" EXACT [] +synonym: "fibrous capsule of kidney" EXACT [FMA:66610] +synonym: "renal capsule" EXACT [GO:0072127] +xref: EMAPA:18679 +xref: FMA:66610 +xref: galen:CapsuleOfKidney +xref: http://linkedlifedata.com/resource/umls/id/C0227637 +xref: http://www.snomedbrowser.com/Codes/Details/243657006 +xref: Kidney:capsule +xref: MA:0000370 +xref: NCIT:C12885 +xref: UMLS:C0227637 {source="ncithesaurus:Renal_Capsule"} +is_a: UBERON:0003567 ! abdomen connective tissue +is_a: UBERON:0011824 ! fibrous connective tissue +intersection_of: UBERON:0011824 ! fibrous connective tissue +intersection_of: bounding_layer_of UBERON:0002113 ! kidney +relationship: bounding_layer_of UBERON:0002113 ! kidney +relationship: contributes_to_morphology_of UBERON:0002113 ! kidney +relationship: part_of UBERON:0002113 ! kidney + +[Term] +id: UBERON:0002016 +name: pulmonary vein +def: "Pulmonary veins are blood vessels that transport blood from the lungs to the heart[GO]." [GO:0060577] +subset: pheno_slim +subset: uberon_slim +synonym: "pulmonary venous tree organ part" EXACT [] +synonym: "venae pulmonales" RELATED LATIN [http://en.wikipedia.org/wiki/Pulmonary_vein] +xref: AAO:0010521 +xref: BTO:0001799 +xref: CALOHA:TS-0840 +xref: EHDAA2:0001579 +xref: EHDAA:2629 +xref: EMAPA:18645 +xref: FMA:66643 +xref: GAID:543 +xref: galen:PulmonaryVein +xref: http://linkedlifedata.com/resource/umls/id/C0034090 +xref: http://www.snomedbrowser.com/Codes/Details/430160002 +xref: MA:0002206 +xref: MESH:D011667 +xref: NCIT:C12776 +xref: Pulmonary:vein +xref: UMLS:C0034090 {source="ncithesaurus:Pulmonary_Vein"} +xref: VHOG:0001133 +xref: XAO:0000394 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0013768 ! great vessel of heart +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0002048 ! lung +relationship: develops_from UBERON:0002061 ! truncus arteriosus +relationship: drains UBERON:0002048 ! lung +relationship: fma_set_term FMA:70827 +relationship: part_of UBERON:0008886 ! pulmonary vascular system + +[Term] +id: UBERON:0002017 +name: portal vein +def: "A vein that conducts blood from the digestive organs, spleen, pancreas, and gallbladder to the liver[BTO]." [BTO:0001792] +subset: pheno_slim +subset: uberon_slim +synonym: "portal venous tree organ part" EXACT [FMA:66645] +xref: BTO:0001792 +xref: CALOHA:TS-0814 +xref: EHDAA2:0001485 +xref: EHDAA:6510 +xref: EMAPA:17349 +xref: FMA:66645 +xref: GAID:540 +xref: galen:PortalVein +xref: http://linkedlifedata.com/resource/umls/id/C0032718 +xref: http://www.snomedbrowser.com/Codes/Details/362064007 +xref: MA:0002198 +xref: MESH:D011169 +xref: NCIT:C33343 +xref: OpenCyc:Mx4rv_bem5wpEbGdrcN5Y29ycA +xref: UMLS:C0032718 {source="ncithesaurus:Portal_Vein"} +xref: VHOG:0000656 +xref: XAO:0000392 +is_a: UBERON:0001638 {source="FMA"} ! vein +relationship: part_of UBERON:0005806 ! portal system + +[Term] +id: UBERON:0002018 +name: synovial membrane of synovial joint +def: "Soft tissue that lines the non-cartilaginous surfaces within joints with cavities (synovial joints)." [http://en.wikipedia.org/wiki/Synovial_membrane] +subset: efo_slim +subset: uberon_slim +synonym: "membrana synovialis (capsula articularis)" EXACT LATIN [FMA:9865, FMA:TA] +synonym: "membrana synovialis capsulae articularis" EXACT LATIN [http://en.wikipedia.org/wiki/Synovial_membrane] +synonym: "stratum synoviale" EXACT LATIN [FMA:66762, FMA:TA] +synonym: "stratum synoviale (capsula articularis)" EXACT LATIN [FMA:9865, FMA:TA] +synonym: "synovial layer" BROAD [FMA:66762] +synonym: "synovial layer of articular capsule of synovial joint" RELATED [FMA:9865] +synonym: "synovial membrane" BROAD [AEO:0000181] +synonym: "synovial membrane of articular capsule of synovial joint" RELATED [FMA:9865] +synonym: "synovium" BROAD [BTO:0001823, VHOG:0001282] +synonym: "synovium of articular capsule of synovial joint" RELATED [FMA:9865] +xref: AEO:0000181 +xref: BTO:0001823 +xref: EFO:0001393 +xref: EHDAA2_RETIRED:0003181 +xref: EMAPA:37476 {source="MA:th"} +xref: EV:0100143 +xref: FMA:9865 +xref: GAID:264 +xref: galen:SynovialMembrane +xref: http://linkedlifedata.com/resource/umls/id/C0039099 +xref: http://www.snomedbrowser.com/Codes/Details/361828005 +xref: MA:0000114 +xref: MESH:D013583 +xref: NCIT:C12473 +xref: Synovial:membrane +xref: UMLS:C0039099 {source="ncithesaurus:Synovial_Membrane"} +xref: VHOG:0001282 +is_a: UBERON:0006915 ! stratified squamous epithelium +is_a: UBERON:0007616 {source="FMA"} ! layer of synovial tissue +is_a: UBERON:0012275 ! meso-epithelium +relationship: attaches_to UBERON:0001484 {source="GAID"} ! articular capsule +relationship: part_of UBERON:0002217 {source="EHDAA2"} ! synovial joint + +[Term] +id: UBERON:0002019 +name: accessory XI nerve +def: "A cranial nerve that originates from neurons in the medulla and in the cervical spinal cord." [BIRNLEX:812, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "accessory nerve" EXACT [] +synonym: "accessory nerve [XI]" EXACT [] +synonym: "accessory spinal nerve" RELATED [BAMS:XIn] +synonym: "accessory XI" EXACT [EHDAA2:0000106] +synonym: "accessory XI nerve" EXACT [] +synonym: "cervical accessory nerve" EXACT [] +synonym: "CN-XI" RELATED [VHOG:0000699] +synonym: "cranial nerve XI" EXACT [BIRNLEX:812] +synonym: "eleventh cranial nerve" EXACT [BIRNLEX:812] +synonym: "nervus accessorius [XI]" EXACT LATIN [FMA:6720, FMA:TA] +synonym: "pars spinalis nervus accessorius" EXACT LATIN [FMA:6720, FMA:TA] +synonym: "radix spinalis nervus accessorius" EXACT LATIN [FMA:6720, FMA:TA] +synonym: "spinal accessory nerve" EXACT [FMA:6720] +synonym: "spinal accessory nerve tree" EXACT [] +synonym: "spinal part of accessory nerve" EXACT [] +synonym: "Willis' nerve" EXACT [] +xref: AAO:0010476 +xref: BAMS:11n +xref: BAMS:XIn +xref: BIRNLEX:812 +xref: EHDAA2:0000106 +xref: EHDAA:2855 +xref: EMAPA:17265 +xref: FMA:6720 +xref: FMA:80284 +xref: GAID:825 +xref: HBA:9340 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2085 +xref: http://en.wikipedia.org/wiki/Spinal_accessory_nerve +xref: http://linkedlifedata.com/resource/umls/id/C0000905 +xref: http://linkedlifedata.com/resource/umls/id/C1305777 +xref: http://www.snomedbrowser.com/Codes/Details/362469008 +xref: MA:0001088 +xref: MBA:717 +xref: MESH:D000055 +xref: NCIT:C32041 +xref: OpenCyc:Mx4rwTEwI5wpEbGdrcN5Y29ycA +xref: UMLS:C0000905 {source="ncithesaurus:Accessory_Nerve"} +xref: UMLS:C0000905 {source="BIRNLEX:812"} +xref: UMLS:C1305777 {source="BIRNLEX:812"} +xref: VHOG:0000699 +xref: XAO:0004214 +is_a: UBERON:0035642 ! laryngeal nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: extends_fibers_into UBERON:0020358 ! accessory XI nerve nucleus +relationship: dubious_for_taxon NCBITaxon:8292 {seeAlso="http://code.google.com/p/xenopus-anatomy-ontology/issues/detail?id=7", source="VHOG", source="Wikipedia"} +relationship: extends_fibers_into UBERON:0020358 ! accessory XI nerve nucleus + +[Term] +id: UBERON:0002020 +name: gray matter +def: "A nervous system structure composed primarily of nerve cell bodies (somas). May also include dendrites and the initial unmyelinated portion of axons." [http://en.wikipedia.org/wiki/Gray_matter, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "gray mater" RELATED [ZFA:0001681] +synonym: "gray matter" EXACT [] +synonym: "gray matter of neuraxis" EXACT [FMA:67242] +synonym: "grey matter" EXACT [] +synonym: "grey matter of neuraxis" EXACT [] +synonym: "grey substance" EXACT [] +synonym: "grisea" RELATED LATIN [] +synonym: "neuronal grey matter" EXACT [AEO:0001012] +synonym: "substantia grisea" EXACT LATIN [FMA:67242, FMA:TA] +xref: AEO:0001012 +xref: EHDAA2:0003136 +xref: EHDAA2_RETIRED:0004658 +xref: EMAPA:37596 {source="MA:th"} +xref: FMA:67242 +xref: Gray:matter +xref: HBA:4006 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2869 +xref: http://linkedlifedata.com/resource/umls/id/C0018220 +xref: MA:0001112 +xref: NCIT:C32695 +xref: OpenCyc:Mx4rwDdKMpwpEbGdrcN5Y29ycA +xref: TAO:0002197 +xref: UMLS:C0018220 {source="ncithesaurus:Gray_Matter"} +xref: VHOG:0001768 +xref: ZFA:0001681 +is_a: UBERON:0011215 ! central nervous system cell part cluster + +[Term] +id: UBERON:0002021 +name: occipital lobe +def: "Posterior part of the cerebral hemisphere (MSH)" [BIRNLEX:1136] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "lobus occipitalis" RELATED LATIN [http://en.wikipedia.org/wiki/Occipital_lobe] +synonym: "regio occipitalis" EXACT LATIN [FMA:67325, FMA:TA] +xref: BAMS:Occipital_lobe +xref: BAMS:OL +xref: BIRNLEX:1136 +xref: BTO:0000293 +xref: CALOHA:TS-0693 +xref: DHBA:12148 +xref: EFO:0000915 +xref: EV:0100170 +xref: FMA:67325 +xref: GAID:678 +xref: HBA:4180 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=140 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=140 {source="BIRNLEX:1136"} +xref: http://linkedlifedata.com/resource/umls/id/C0028785 +xref: http://www.snomedbrowser.com/Codes/Details/180923002 +xref: MAT:0000507 +xref: MESH:A08.186.211.730.885.213.571 +xref: NCIT:C12355 +xref: Occipital:lobe +xref: OpenCyc:Mx4rv9OFy5wpEbGdrcN5Y29ycA +xref: UMLS:C0028785 {source="BIRNLEX:1136"} +xref: UMLS:C0028785 {source="ncithesaurus:Occipital_Lobe"} +is_a: UBERON:0016526 {source="FMA"} ! lobe of cerebral hemisphere +relationship: adjacent_to UBERON:0001871 ! temporal lobe +relationship: adjacent_to UBERON:0001872 ! parietal lobe +relationship: contributes_to_morphology_of UBERON:0001893 ! telencephalon + +[Term] +id: UBERON:0002022 +name: insula +alt_id: UBERON:0023846 +def: "Gray matter of the insular region of the neocortex. In gyrencephalic animals, it is part of the insular lobe and lies in the depths of the lateral fissure and covered by portions of the frontal, parietal and temporal lobes. It includes Brodmann areas 13-16." [BIRNLEX:1117] +subset: uberon_slim +synonym: "central lobe" EXACT [FMA:67329] +synonym: "cortex insularis" RELATED LATIN [NeuroNames:111] +synonym: "cortex of island" EXACT [FMA:67329] +synonym: "iNS" BROAD ABBREVIATION [FMA:67329, FMA:CMA] +synonym: "insula cerebri" RELATED LATIN [NeuroNames:111] +synonym: "insula lobule" EXACT [FMA:67329] +synonym: "insula of Reil" RELATED [NeuroNames:111] +synonym: "insula Reilii" RELATED LATIN [NeuroNames:111] +synonym: "insular cortex" NARROW [BIRNLEX:1117] +synonym: "insular cortex" NARROW [FMA:67329] +synonym: "insular gyrus" RELATED [NeuroNames:111] +synonym: "insular lobe" EXACT [NLX:11342] +synonym: "insular lobe" EXACT [FMA:67329] +synonym: "insular region" EXACT [FMA:67329] +synonym: "insulary cortex" RELATED [BTO:0001105] +synonym: "island of Reil" EXACT [FMA:67329] +synonym: "lobus insularis" EXACT LATIN [FMA:67329, FMA:TA] +synonym: "morphological insula" RELATED [NeuroNames:111] +xref: BAMS:AI +xref: BAMS:Ins +xref: BIRNLEX:1117 +xref: BTO:0001105 +xref: DHBA:12176 +xref: EV:0100172 +xref: FMA:67329 +xref: HBA:4268 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=111 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=111 {source="BIRNLEX:1117"} +xref: http://linkedlifedata.com/resource/umls/id/C0021640 +xref: http://www.snomedbrowser.com/Codes/Details/279201009 +xref: Insular:cortex +xref: NCIT:C32278 +xref: ncithesaurus:Insula +xref: NLX:11342 +xref: OpenCyc:Mx4rvpK5WZwpEbGdrcN5Y29ycA +xref: UMLS:C0021640 {source="BIRNLEX:1117"} +is_a: UBERON:0005401 ! cerebral hemisphere gray matter +relationship: part_of UBERON:0000956 {source="BTO", source="NIF"} ! cerebral cortex + +[Term] +id: UBERON:0002023 +name: claustrum of brain +def: "one of the four basal ganglia in each cerebral hemisphere that consists of a thin lamina of gray matter between the lentiform nucleus and the insula[BTO]. The claustrum, which is suspected to be present in all mammals, is a fairly thin (fraction of 1 mm to multiple mms) vertical curved sheet of subcortical gray matter oriented sagittally between the white matter tracts of the external capsule and extreme capsule. The claustrum is lateral to the putamen and medial to the insular cortex and is considered by some sources to be part of the basal ganglia. There are lateral and medial tracts connecting to many cortices and perhaps to the hippocampus, the amygdala, and the caudate nucleus (connections with subcortical centers are a matter of debate)[WP]." [BTO:0004292, http://en.wikipedia.org/wiki/Claustrum] +subset: uberon_slim +synonym: "claustrum" EXACT [MA:0000888] +synonym: "claustrum (Burdach)" RELATED [NeuroNames:252] +synonym: "dorsal claustrum" EXACT [FMA:67440] +synonym: "dorsal portion of claustrum" EXACT [FMA:67440] +xref: BAMS:CL +xref: BAMS:Cl +xref: BAMS:CLA +xref: BIRNLEX:1522 +xref: BM:Tel-Cl +xref: BTO:0004292 +xref: DHBA:10346 +xref: DMBA:15984 +xref: EMAPA:35244 +xref: EV:0100183 +xref: FMA:67440 +xref: HBA:4321 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=252 {source="BIRNLEX:1522"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=252 +xref: http://en.wikipedia.org/wiki/Claustrum +xref: http://linkedlifedata.com/resource/umls/id/C0008910 +xref: http://www.snomedbrowser.com/Codes/Details/279410004 +xref: MA:0000888 +xref: MBA:583 +xref: NCIT:C32329 +xref: PBA:128012960 +xref: UMLS:C0008910 {source="BIRNLEX:1522"} +xref: UMLS:C0008910 {source="ncithesaurus:Claustrum"} +is_a: UBERON:0002420 {source="FMA"} ! basal ganglion +is_a: UBERON:0005401 ! cerebral hemisphere gray matter +disjoint_from: UBERON:0002729 {source="NIFSTD"} ! claustral amygdaloid area +relationship: part_of UBERON:0000203 {source="ISBN:0471888893"} ! pallium +relationship: part_of UBERON:0006098 {source="NIF"} ! basal nuclear complex +relationship: present_in_taxon NCBITaxon:40674 {source="Wikipedia"} + +[Term] +id: UBERON:0002024 +name: internal carotid nerve plexus +def: "The internal carotid plexus (carotid plexus) is situated on the lateral side of the internal carotid artery, and in the plexus there occasionally exists a small gangliform swelling, the carotid ganglion, on the under surface of the artery. Postganglionic sympathetic fibres ascend from the superior cervical ganglion, along the walls of the internal carotid artery, to enter the internal carotid plexus. These fibres then distribute to deep structures, which include the levator palpebrae superioris and pupillary dilator muscles. Some of the fibres from the internal carotid plexus converge to form the deep petrosal nerve. The internal carotid plexus communicates with the semilunar ganglion, the abducent nerve, and the sphenopalatine ganglion; it distributes filaments to the wall of the carotid artery, and also communicates with the tympanic branch of the glossopharyngeal nerve. [WP,unvetted]." [http://en.wikipedia.org/wiki/Internal_carotid_nerve_plexus] +subset: uberon_slim +synonym: "internal carotid plexus" EXACT [] +synonym: "plexus caroticus internus" EXACT LATIN [FMA:67533, FMA:TA] +xref: EMAPA:37618 {source="MA:th"} +xref: FMA:67533 +xref: http://en.wikipedia.org/wiki/Internal_carotid_nerve_plexus +xref: http://linkedlifedata.com/resource/umls/id/C0459526 +xref: http://www.snomedbrowser.com/Codes/Details/280509006 +xref: MA:0001162 +xref: NCIT:C52746 +xref: UMLS:C0459526 {source="ncithesaurus:Internal_Carotid_Nerve_Plexus"} +is_a: UBERON:0001816 ! autonomic nerve plexus + +[Term] +id: UBERON:0002025 +name: stratum basale of epidermis +def: "the deepest layer of the epidermis, which is composed of dividing stem cells and anchoring cells" [ISBN:0-683-40008-8, MP:0001231] +subset: pheno_slim +subset: uberon_slim +synonym: "basal cell layer of epidermis" EXACT [FMA:67540] +synonym: "basal cell layer of skin" RELATED [] +synonym: "basal epidermal layer" EXACT [ZFA:0001180] +synonym: "basal layer of epidermis" RELATED [] +synonym: "epidermal basal stratum" EXACT [TAO:0001180] +synonym: "epidermis basal layer" RELATED [] +synonym: "epidermis sensorial layer" RELATED [XAO:0000041] +synonym: "epidermis stratum basale" EXACT [] +synonym: "epidermis stratum germinativum" RELATED [] +synonym: "Malpighian layer" BROAD [http://en.wikipedia.org/wiki/Malpighian_layer] +synonym: "rete Malphighii" BROAD MISSPELLING [] +synonym: "rete Malpighii" BROAD [] +synonym: "stratum basale" BROAD [] +synonym: "stratum basalis of epidermis" EXACT [] +synonym: "stratum germinativum" EXACT [] +synonym: "stratum germinosum" BROAD [] +synonym: "stratum germinosum of epidermis" EXACT [] +synonym: "stratum Malpighi" BROAD LATIN [http://en.wikipedia.org/wiki/Malpighian_layer] +xref: AAO:0010598 +xref: BTO:0000438 +xref: EMAPA:32779 +xref: FMA:67540 +xref: http://linkedlifedata.com/resource/umls/id/C0221925 +xref: http://www.snomedbrowser.com/Codes/Details/419481005 +xref: MA:0000803 +xref: NCIT:C33466 +xref: NCIT:C33623 +xref: Stratum:germinativum +xref: TAO:0001180 +xref: UMLS:C0221925 {source="ncithesaurus:Stratum_Basale"} +xref: XAO:0000041 +xref: ZFA:0001180 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0013754 ! integumentary system layer +relationship: part_of UBERON:0001003 ! skin epidermis + +[Term] +id: UBERON:0002026 +name: stratum spinosum of epidermis +def: "the layer of polyhedral cells in the epidermis found between the stratum granulosum and stratum basale; shrinkage and adhesion of these cells gives a spiny or prickly appearance" [ISBN:0-683-40008-8, MP:0001236] +subset: pheno_slim +synonym: "epidermis prickle cell layer" RELATED [] +synonym: "epidermis stratum spinosum" EXACT [] +synonym: "Malpighian layer" BROAD [http://en.wikipedia.org/wiki/Malpighian_layer] +synonym: "prickle cell layer" RELATED [BTO:0000435] +synonym: "prickle cell layer of epidermis" EXACT [FMA:67542] +synonym: "squamous cell layer of epidermis" EXACT [] +synonym: "stratum Malpighii" BROAD LATIN [http://en.wikipedia.org/wiki/Malpighian] +synonym: "stratum spinosum" EXACT [] +xref: BTO:0000435 +xref: EMAPA:32785 +xref: FMA:67542 +xref: http://linkedlifedata.com/resource/umls/id/C0221924 +xref: http://www.snomedbrowser.com/Codes/Details/420086000 +xref: MA:0000807 +xref: NCIT:C12850 +xref: Stratum:spinosum +xref: UMLS:C0221924 {source="ncithesaurus:Stratum_Spinosum"} +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0013754 ! integumentary system layer +relationship: adjacent_to UBERON:0002025 ! stratum basale of epidermis +relationship: adjacent_to UBERON:0002069 ! stratum granulosum of epidermis +relationship: part_of UBERON:0001003 ! skin epidermis + +[Term] +id: UBERON:0002027 +name: stratum corneum of epidermis +def: "the outer layer of the epidermis, consisting of several layers of flat keratinized non-nucleated cells" [ISBN:0-683-40008-8, MP:0001240] +subset: pheno_slim +synonym: "cornified layer" EXACT [] +synonym: "epidermis stratum corneum" EXACT [] +synonym: "horny layer" BROAD [BTO:0000344] +synonym: "horny layer of epidermis" EXACT [FMA:67545] +synonym: "keratinized squame layer" BROAD [] +synonym: "keratinized squame layer of epidermis" EXACT [] +synonym: "stratum corneum" BROAD [] +synonym: "stratum corneum epidermidis" RELATED LATIN [http://en.wikipedia.org/wiki/Stratum_corneum] +xref: AAO:0010597 +xref: BTO:0000344 +xref: CALOHA:TS-0981 +xref: EMAPA:32787 +xref: FMA:67545 +xref: http://linkedlifedata.com/resource/umls/id/C0221921 +xref: http://www.snomedbrowser.com/Codes/Details/361695002 +xref: MA:0000804 +xref: NCIT:C33625 +xref: Stratum:corneum +xref: UMLS:C0221921 {source="ncithesaurus:Stratum_Corneum"} +is_a: UBERON:0003055 ! periderm +is_a: UBERON:0013754 ! integumentary system layer +relationship: superficial_to UBERON:0002069 ! stratum granulosum of epidermis + +[Term] +id: UBERON:0002028 +name: hindbrain +def: "The most posterior of the three principal regions of the brain. In mammals and birds the hindbrain is divided into a rostral metencephalon and a caudal myelencephalon. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata (From: Neuroanatomy of the Zebrafish Brain)[ZFA]. Organ component of neuraxis that has as its parts the pons, cerebellum and medulla oblongata[FMA]." [http://en.wikipedia.org/wiki/Rhombencephalon, ZFA:0000029, ZFIN:curator] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "rhombencephalon" RELATED [] +xref: AAO:0010150 +xref: BAMS:HB +xref: BIRNLEX:942 +xref: BTO:0000672 +xref: CALOHA:TS-0457 +xref: DHBA:10653 +xref: DMBA:16808 +xref: EFO:0000923 +xref: EHDAA2:0000746 +xref: EHDAA:3514 +xref: EHDAA:6487 +xref: EMAPA:16916 +xref: FMA:67687 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=540 {source="BIRNLEX:942"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=540 +xref: http://en.wikipedia.org/wiki/Rhombencephalon +xref: http://linkedlifedata.com/resource/umls/id/C0035507 +xref: http://linkedlifedata.com/resource/umls/id/C1522180 +xref: http://www.snomedbrowser.com/Codes/Details/303456008 +xref: MA:0000195 +xref: MAT:0000107 +xref: MBA:1065 +xref: MESH:D012249 +xref: MIAA:0000107 +xref: NCIT:C40336 +xref: TAO:0000029 +xref: UMLS:C0035507 {source="ncithesaurus:Hind-Brain"} +xref: UMLS:C0035507 {source="BIRNLEX:942"} +xref: UMLS:C1522180 {source="BIRNLEX:942"} +xref: VHOG:0000070 +xref: XAO:0000015 +xref: ZFA:0000029 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0000955 ! brain +relationship: develops_from UBERON:0007277 ! presumptive hindbrain +relationship: immediate_transformation_of UBERON:0007277 {source="Bgee:AN"} ! presumptive hindbrain +relationship: present_in_taxon NCBITaxon:7762 {source="http://www.ncbi.nlm.nih.gov/pubmed/8932866"} + +[Term] +id: UBERON:0002029 +name: epithelium of gall bladder +def: "The simple columnar epithelial lining of the gall bladder." [MP:0009492] +subset: pheno_slim +synonym: "biliary epithelium" RELATED [] +synonym: "epithelial tissue of gall bladder" EXACT [OBOL:automatic] +synonym: "epithelial tissue of gallbladder" EXACT [OBOL:automatic] +synonym: "epithelium of gallbladder" EXACT [OBOL:automatic] +synonym: "gall bladder epithelial tissue" EXACT [OBOL:automatic] +synonym: "gall bladder epithelium" EXACT [] +synonym: "gallbladder epithelial tissue" EXACT [OBOL:automatic] +synonym: "gallbladder epithelium" EXACT [OBOL:automatic] +xref: BTO:0001449 +xref: CALOHA:TS-1304 +xref: EMAPA:35370 +xref: FMA:67711 +xref: http://linkedlifedata.com/resource/umls/id/C1180206 +xref: MA:0001632 +xref: NCIT:C49227 +xref: UMLS:C1180206 {source="ncithesaurus:Gallbladder_Epithelium"} +is_a: UBERON:0000485 ! simple columnar epithelium +is_a: UBERON:0005911 ! endo-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002110 ! gall bladder +relationship: contributes_to_morphology_of UBERON:0002110 ! gall bladder +relationship: part_of UBERON:0002110 ! gall bladder + +[Term] +id: UBERON:0002030 +name: nipple +def: "Projection of skin containing the outlets for 15-20 lactiferous ducts arranged cylindrically around the tip." [FMA:67771, http://en.wikipedia.org/wiki/Nipple] +subset: pheno_slim +subset: uberon_slim +synonym: "papilla mammae" EXACT [MP:0009723] +synonym: "papilla mammaria" RELATED LATIN [http://en.wikipedia.org/wiki/Nipple] +synonym: "papilla of breast" EXACT [] +synonym: "papillary part of breast" NARROW [] +synonym: "teat" NARROW [] +synonym: "thele" EXACT [MP:0009723] +synonym: "thelium" EXACT [MP:0009723] +xref: BTO:0000821 +xref: CALOHA:TS-2234 +xref: EMAPA:36508 +xref: FMA:67771 +xref: GAID:35 +xref: galen:Nipple +xref: http://en.wikipedia.org/wiki/Nipple +xref: http://linkedlifedata.com/resource/umls/id/C0028109 +xref: http://www.snomedbrowser.com/Codes/Details/265780004 +xref: MA:0000796 +xref: MESH:D009558 +xref: NCIT:C12299 +xref: OpenCyc:Mx4rvVjKi5wpEbGdrcN5Y29ycA +xref: UMLS:C0028109 {source="ncithesaurus:Nipple"} +is_a: UBERON:0000475 ! organism subdivision +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: develops_from UBERON:0008425 {source="Stedmans"} ! mammary ridge + +[Term] +id: UBERON:0002031 +name: epithelium of bronchus +def: "An epithelium that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] +subset: efo_slim +subset: pheno_slim +synonym: "bronchi epithelial tissue" EXACT [OBOL:automatic] +synonym: "bronchi epithelium" EXACT [OBOL:automatic] +synonym: "bronchial epithelium" EXACT [] +synonym: "bronchial trunk epithelial tissue" EXACT [OBOL:automatic] +synonym: "bronchial trunk epithelium" EXACT [OBOL:automatic] +synonym: "bronchus epithelial tissue" EXACT [OBOL:automatic] +synonym: "bronchus epithelium" EXACT [] +synonym: "epithelial tissue of bronchi" EXACT [OBOL:automatic] +synonym: "epithelial tissue of bronchial trunk" EXACT [OBOL:automatic] +synonym: "epithelial tissue of bronchus" EXACT [OBOL:automatic] +synonym: "epithelium of bronchi" EXACT [OBOL:automatic] +synonym: "epithelium of bronchial trunk" EXACT [OBOL:automatic] +xref: BTO:0001845 +xref: CALOHA:TS-1240 +xref: EFO:0000307 +xref: EMAPA:32691 +xref: FMA:67782 +xref: http://linkedlifedata.com/resource/umls/id/C0599333 +xref: MA:0001839 +xref: NCIT:C32231 +xref: UMLS:C0599333 {source="ncithesaurus:Bronchial_Epithelium"} +is_a: UBERON:0008397 ! tracheobronchial epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002185 ! bronchus +relationship: contributes_to_morphology_of UBERON:0002185 ! bronchus +relationship: part_of UBERON:0002185 ! bronchus + +[Term] +id: UBERON:0002032 +name: areola +def: "Subdivision of breast which consists of skin, connective tissue and smooth muscle bundle and modified sebaceous glands and which surrounds the nipple." [FMA:67796] +subset: pheno_slim +subset: uberon_slim +synonym: "areola mammae" RELATED LATIN [http://en.wikipedia.org/wiki/Areola] +synonym: "areolae" RELATED PLURAL [] +xref: FMA:67796 +xref: http://en.wikipedia.org/wiki/Areola +xref: http://linkedlifedata.com/resource/umls/id/C0222608 +xref: MA:0000788 +xref: NCIT:C12368 +xref: OpenCyc:Mx4rvrcOL5wpEbGdrcN5Y29ycA +xref: UMLS:C0222608 {source="ncithesaurus:Areola"} +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0034929 ! external soft tissue zone +relationship: contributes_to_morphology_of UBERON:0001911 ! mammary gland +relationship: part_of UBERON:0001911 {source="MA"} ! mammary gland + +[Term] +id: UBERON:0002033 +name: arrector muscle of hair +def: "A tiny smooth muscle that connects the hair follicle with the dermis." [https://doi.org/10.1016/j.cub.2008.12.005] +subset: pheno_slim +subset: uberon_slim +synonym: "arectores pilorum" RELATED [BTO:0005132] +synonym: "arrector pili" EXACT PLURAL [FMA:67821, MA:0000778] +synonym: "arrector pili muscle" EXACT PLURAL [EMAPA:26779, MP:0010679] +synonym: "arrector pili smooth muscle" EXACT PLURAL [MA:0000778] +synonym: "arrector pilli" EXACT PLURAL [MP:0010679] +synonym: "arrector pilli muscle" EXACT PLURAL [MP:0010679] +synonym: "arrector pilorum" EXACT [ISBN:0123813611] +synonym: "arrector pilorum muscle of hair" EXACT [ISBN:0123813611] +synonym: "erector pili" RELATED PLURAL [BTO:0005132] +synonym: "erectores pilorum" RELATED [BTO:0005132] +synonym: "pilomotor muscle" RELATED [BTO:0005132] +xref: BTO:0005132 +xref: EMAPA:26775 +xref: FMA:67821 +xref: http://en.wikipedia.org/wiki/Arrector_pili_muscle +xref: http://www.snomedbrowser.com/Codes/Details/319910005 +xref: MA:0000778 +is_a: UBERON:0001135 {source="FMA"} ! smooth muscle tissue +relationship: attaches_to UBERON:0002073 ! hair follicle +relationship: part_of UBERON:0011932 {source="FMA"} ! pilosebaceous unit + +[Term] +id: UBERON:0002034 +name: suprachiasmatic nucleus +def: "* An ovoid densely packed collection of small cells of the anterior hypothalamus lying close to the midline in a shallow impression of the optic chiasm. (MSH) * small group of nerve cell bodies in the supraoptic region of the hypothalamus, just above the optic chiasm; influences rhythmic aspects of hypothalamic functions in many vertebrate species. (CSP)" [BIRNLEX:1325] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "nucleus suprachiasmaticus" RELATED LATIN [http://en.wikipedia.org/wiki/Suprachiasmatic_nucleus] +synonym: "nucleus suprachiasmaticus hypothalami" RELATED LATIN [NeuroNames:384] +synonym: "SCh" BROAD ABBREVIATION [BIRNLEX:1325, NIFSTD:NeuroNames_abbrevSource] +synonym: "SCN" BROAD ABBREVIATION [BIRNLEX:1325, NIFSTD:NeuroNames_abbrevSource] +synonym: "SCN" RELATED [BTO:0001822] +synonym: "suprachiasmatic nucleus (Spiegel-Zwieg)" RELATED [NeuroNames:384] +synonym: "suprachiasmatic nucleus of hypothalamus" EXACT [] +xref: BAMS:SCH +xref: BAMS:SCh +xref: BIRNLEX:1325 +xref: BM:Die-Hy-SCN +xref: BTO:0001822 +xref: CALOHA:TS-0992 +xref: DHBA:10480 +xref: DMBA:15660 +xref: EFO:0002475 +xref: EMAPA:35841 +xref: EV:0100228 +xref: FMA:67883 +xref: GAID:645 +xref: HBA:12908 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=384 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=384 {source="BIRNLEX:1325"} +xref: http://linkedlifedata.com/resource/umls/id/C0038866 +xref: http://linkedlifedata.com/resource/umls/id/C1289559 +xref: http://www.snomedbrowser.com/Codes/Details/369132004 +xref: MA:0000843 +xref: MBA:286 +xref: MESH:A08.186.211.730.385.357.342.625 +xref: NCIT:C74537 +xref: Suprachiasmatic:nucleus +xref: TAO:0000441 +xref: UMLS:C0038866 {source="ncithesaurus:Suprachiasmatic_Nucleus"} +xref: UMLS:C0038866 {source="BIRNLEX:1325"} +xref: UMLS:C1289559 {source="BIRNLEX:1325"} +xref: VHOG:0000036 +xref: XAO:0004072 +xref: ZFA:0000441 +is_a: UBERON:0006568 ! hypothalamic nucleus +is_a: UBERON:0007251 ! preoptic nucleus +relationship: contributes_to_morphology_of UBERON:0001898 ! hypothalamus +relationship: part_of UBERON:0002272 ! medial zone of hypothalamus + +[Term] +id: UBERON:0002035 +name: medial preoptic nucleus +def: "The medial preoptic nucleus is bounded laterally by the lateral preoptic nucleus, and medially by the preoptic periventricular nucleus. It releases gonadotropin-releasing hormone, controls copulation in males, and is larger in males than in females.[WP,unvetted]." [http://en.wikipedia.org/wiki/Medial_preoptic_nucleus#Medial_preoptic_nucleus, http://en.wikipedia.org/wiki/Sexually_dimorphic_nucleus] +subset: uberon_slim +synonym: "area praeoptica medialis" RELATED LATIN [NeuroNames:380] +synonym: "area preopticus medialis" RELATED LATIN [NeuroNames:380] +synonym: "medial preoptic hypothalamic nucleus" EXACT [] +synonym: "MPO" BROAD ABBREVIATION [BIRNLEX:706, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus praeopticus medialis" RELATED LATIN [NeuroNames:380] +synonym: "nucleus preopticus medialis" RELATED LATIN [NeuroNames:380] +xref: BAMS:MPO +xref: BIRNLEX:706 +xref: DHBA:10470 +xref: DMBA:15604 +xref: EMAPA:35549 +xref: FMA:67890 +xref: HBA:4544 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=380 {source="BIRNLEX:706"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=380 +xref: http://en.wikipedia.org/wiki/Sexually_dimorphic_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0175313 +xref: http://linkedlifedata.com/resource/umls/id/C1289555 +xref: http://www.snomedbrowser.com/Codes/Details/369128005 +xref: MA:0000840 +xref: MBA:515 +xref: UMLS:C0175313 {source="BIRNLEX:706"} +xref: UMLS:C1289555 {source="BIRNLEX:706"} +is_a: UBERON:0006568 ! hypothalamic nucleus +is_a: UBERON:0007251 ! preoptic nucleus +relationship: part_of UBERON:0007769 {source="MA"} ! medial preoptic region + +[Term] +id: UBERON:0002036 +name: striated muscle tissue +def: "Muscle tissue that contains fibers that are divided by transverse bands into striations." [CL:0000737, GOC:dph, GOC:mtg_muscle] +subset: pheno_slim +subset: uberon_slim +synonym: "striated muscle" EXACT [] +xref: AAO:0010762 +xref: AEO:0000140 +xref: CALOHA:TS-2047 +xref: EHDAA2:0003140 +xref: EMAPA:36390 +xref: FMA:67905 +xref: galen:StriatedMuscle +xref: http://linkedlifedata.com/resource/umls/id/C1331262 +xref: MA:0002438 +xref: NCIT:C12436 +xref: OpenCyc:Mx4rwAoze5wpEbGdrcN5Y29ycA +xref: Striated:muscle +xref: UMLS:C1331262 {source="ncithesaurus:Striated_Muscle_Tissue"} +xref: WBbt:0005779 +is_a: UBERON:0002385 ! muscle tissue + +[Term] +id: UBERON:0002037 +name: cerebellum +def: "Part of the metencephalon that lies in the posterior cranial fossa behind the brain stem. It is concerned with the coordination of movement[MESH]. A large dorsally projecting part of the brain concerned especially with the coordination of muscles and the maintenance of bodily equilibrium, situated between the brain stem and the back of the cerebrum , and formed in humans of two lateral lobes and a median lobe[BTO]. Brain structure derived from the anterior hindbrain, and perhaps including posterior midbrain. The cerebellum plays a role in somatic motor function, the control of muscle tone, and balance[ZFA]." [BTO:0000232, https://sourceforge.net/tracker/index.php?func=detail&aid=3291162&group_id=76834&atid=1205376, ISBN:3764351209, MESH:A08.186.211.132.810.428.200, ZFA:0000100] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "corpus cerebelli" RELATED LATIN [NeuroNames:643] +synonym: "epencephalon-1" EXACT [FMA:67944] +synonym: "infratentorial region" BROAD [http://en.wikipedia.org/wiki/Tentorium_cerebelli] +synonym: "parencephalon" RELATED LATIN [NeuroNames:643] +xref: AAO:0010485 +xref: BAMS:CB +xref: BAMS:Cb +xref: BIRNLEX:1489 +xref: BM:CB +xref: BTO:0000232 +xref: CALOHA:TS-0125 +xref: DHBA:10656 +xref: EFO:0000327 +xref: EHDAA2:0000232 +xref: EMAPA:17787 +xref: EV:0100293 +xref: FMA:67944 +xref: GAID:595 +xref: HBA:4696 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=643 {source="BIRNLEX:1489"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=643 +xref: http://en.wikipedia.org/wiki/Cerebellum +xref: http://linkedlifedata.com/resource/umls/id/C0007765 +xref: http://linkedlifedata.com/resource/umls/id/C1268981 +xref: http://www.snomedbrowser.com/Codes/Details/180924008 +xref: MA:0000198 +xref: MAT:0000110 +xref: MBA:512 +xref: MESH:D002531 +xref: MIAA:0000110 +xref: NCIT:C12445 +xref: OpenCyc:Mx4rvl1eipwpEbGdrcN5Y29ycA +xref: TAO:0000100 +xref: UMLS:C0007765 {source="ncithesaurus:Cerebellum"} +xref: UMLS:C0007765 {source="BIRNLEX:1489"} +xref: UMLS:C1268981 {source="BIRNLEX:1489"} +xref: VHOG:0000024 +xref: XAO:0003098 +xref: ZFA:0000100 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0001895 ! metencephalon +relationship: develops_from UBERON:0006215 {evidence="definitional"} ! rhombic lip +relationship: dubious_for_taxon NCBITaxon:117569 {source="http://icb.oxfordjournals.org/content/42/4/743.full"} +relationship: part_of UBERON:0001895 {source="FMA", source="MA"} ! metencephalon +relationship: present_in_taxon NCBITaxon:117569 {source="ISBN:0471888893"} + +[Term] +id: UBERON:0002038 +name: substantia nigra +def: "Predominantly gray matter midbrain structure lying dorsal to the crus cerebri and ventral to the midbrain tegmentum. It is divided into a dorsal, cellularly compact region known as the pars compacta and a more ventrally located, containing more loosely packed cells, the pars reticulata. The most lateral region of the reticulata is identified as the pars lateralis (MM)." [BIRNLEX:789] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "nucleus of basis pedunculi" EXACT [] +synonym: "nucleus pigmentosus subthalamo-peduncularis" RELATED LATIN [NeuroNames:536] +synonym: "SN" BROAD ABBREVIATION [BIRNLEX:789, NIFSTD:NeuroNames_abbrevSource] +synonym: "Soemmering's substance" EXACT [] +synonym: "substancia nigra" RELATED [http://en.wikipedia.org/wiki/Substantia_nigra] +synonym: "substantia nigra (Soemmerringi)" RELATED LATIN [NeuroNames:536] +xref: BAMS:SN +xref: BIRNLEX:789 +xref: BTO:0000143 +xref: CALOHA:TS-0990 +xref: DHBA:12251 +xref: EFO:0000922 +xref: EHDAA2:0004711 +xref: EMAPA:35835 +xref: EV:0100247 +xref: FMA:67947 +xref: GAID:581 +xref: HBA:9072 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=536 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=536 {source="BIRNLEX:789"} +xref: http://linkedlifedata.com/resource/umls/id/C0038590 +xref: http://linkedlifedata.com/resource/umls/id/C1269578 +xref: http://www.snomedbrowser.com/Codes/Details/279286002 +xref: MA:0000210 +xref: MAT:0000504 +xref: MESH:A08.186.211.132.659.687 +xref: NCIT:C12453 +xref: Substantia:nigra +xref: UMLS:C0038590 {source="BIRNLEX:789"} +xref: UMLS:C0038590 {source="ncithesaurus:Substantia_Nigra"} +xref: UMLS:C1269578 {source="BIRNLEX:789"} +xref: VHOG:0001573 +is_a: UBERON:0009661 ! midbrain nucleus +relationship: contributes_to_morphology_of UBERON:0001891 ! midbrain +relationship: contributes_to_morphology_of UBERON:0010011 ! collection of basal ganglia +relationship: in_lateral_side_of UBERON:0001891 {source="FMA-abduced-lr"} ! midbrain +relationship: part_of UBERON:0002420 {source="NIF"} ! basal ganglion + +[Term] +id: UBERON:0002039 +name: inferior phrenic vein +def: "The Inferior Phrenic Veins drain the diaphragm and follow the course of the inferior phrenic arteries; the right ends in the inferior vena cava; the left is often represented by two branches, one of which ends in the left renal or suprarenal vein, while the other passes in front of the esophageal hiatus in the diaphragm and opens into the inferior vena cava. [WP,unvetted]." [http://en.wikipedia.org/wiki/Inferior_phrenic_vein] +subset: uberon_slim +synonym: "venae phrenicae inferiores" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_phrenic_vein] +xref: EMAPA:37157 {source="MA:th"} +xref: FMA:68068 +xref: http://en.wikipedia.org/wiki/Inferior_phrenic_vein +xref: http://www.snomedbrowser.com/Codes/Details/286500002 +xref: MA:0002195 +is_a: UBERON:0012193 {source="MA"} ! phrenic vein + +[Term] +id: UBERON:0002040 +name: bronchial artery +def: "A systemic artery that supplies the lung with with oxygenated blood." [http://en.wikipedia.org/wiki/Bronchial_artery, UBERON:cjm] +comment: Although there is much variation, there are usually two bronchial arteries that run to the left lung, and one to the right lung. +subset: uberon_slim +synonym: "arteriae bronchiales" RELATED LATIN [http://en.wikipedia.org/wiki/Bronchial_artery] +synonym: "bronchial arterial tree" EXACT [] +synonym: "rami bronchiales partis thoracicae aortae" RELATED LATIN [http://en.wikipedia.org/wiki/Bronchial_artery] +xref: Bronchial:artery +xref: EMAPA:18608 +xref: FMA:68109 +xref: GAID:477 +xref: http://linkedlifedata.com/resource/umls/id/C0006257 +xref: http://www.snomedbrowser.com/Codes/Details/244247009 +xref: MA:0001923 +xref: MESH:D001981 +xref: NCIT:C32230 +xref: OpenCyc:Mx4r4sy0UiNbEd2AAAACs6hRXg +xref: UMLS:C0006257 {source="ncithesaurus:Bronchial_Artery"} +is_a: UBERON:0004573 ! systemic artery +intersection_of: UBERON:0004573 ! systemic artery +intersection_of: part_of UBERON:0004571 ! systemic arterial system +intersection_of: supplies UBERON:0002048 ! lung +relationship: supplies UBERON:0002048 ! lung + +[Term] +id: UBERON:0002041 +name: terminal bronchus +subset: organ_slim +xref: EMAPA:37763 {source="MA:th"} +xref: FMA:68416 +xref: MA:0000440 +is_a: UBERON:0002185 ! bronchus + +[Term] +id: UBERON:0002042 +name: lymphatic vessel endothelium +def: "An endothelium that is part of a lymphatic vessel [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +subset: vertebrate_core +synonym: "endothelium of lymph vessel" EXACT [OBOL:automatic] +synonym: "endothelium of lymphatic vessel" EXACT [FMA:68444] +synonym: "lymph vessel endothelium" EXACT [OBOL:automatic] +synonym: "lymphatic endothelium" EXACT [BTO:0004303] +synonym: "lymphatic vessel endothelium" EXACT [] +xref: BTO:0004303 +xref: CALOHA:TS-2156 +xref: EMAPA:35533 +xref: FMA:68444 +xref: http://linkedlifedata.com/resource/umls/id/C1180786 +xref: MA:0000750 +xref: MESH:D004729 +xref: NCIT:C49258 +xref: TAO:0005258 +xref: UMLS:C1180786 {source="ncithesaurus:Lymphatic_Vessel_Endothelium"} +xref: ZFA:0005258 +is_a: UBERON:0004852 ! cardiovascular system endothelium +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0001473 ! lymphatic vessel +relationship: contributes_to_morphology_of UBERON:0001473 ! lymphatic vessel +relationship: part_of UBERON:0001473 ! lymphatic vessel + +[Term] +id: UBERON:0002043 +name: dorsal raphe nucleus +def: "A large raphe nucleus extending from the anterior part of the pons through the mesencephalon; its neurons are serotoninergic[NIF]. The dorsal raphe nucleus is a part of the raphe nucleus and consists of rostral and caudal subdivisions. The rostral aspect of the dorsal raphe is further divided into interfascicular, ventral, ventrolateral and dorsal subnuclei. The projections of the dorsal raphe have been found to vary topographically, and thus the subnuclei differ in their projections. An increased number of cells in the lateral aspects of the dorsal raphe is characteristic of humans and other primates. [WP,unvetted]." [BIRNLEX:982, http://en.wikipedia.org/wiki/Dorsal_raphe_nucleus, https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3248146&group_id=36855] +subset: efo_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "cell group b7" EXACT [FMA:68462] +synonym: "dorsal nucleus of the raphe" EXACT [BrainInfo:512, FMA:68462] +synonym: "dorsal nucleus raphe" EXACT [FMA:68462] +synonym: "dorsal raphe" EXACT [BIRNLEX:982] +synonym: "dorsal raphé" RELATED [BAMS:DR] +synonym: "DR" BROAD ABBREVIATION [BIRNLEX:982, NIFSTD:NeuroNames_abbrevSource] +synonym: "DRN" BROAD ABBREVIATION [BIRNLEX:982, NIFSTD:NeuroNames_abbrevSource] +synonym: "inferior raphe nucleus" EXACT [GO:0021724] +synonym: "nucleus dorsalis raphes" RELATED LATIN [NeuroNames:512] +synonym: "nucleus raphe dorsalis" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsal_raphe_nucleus] +synonym: "nucleus raphe posterior" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsal_raphe_nucleus] +synonym: "nucleus raphes dorsalis" EXACT [BrainInfo:512, BTO:0002434] +synonym: "nucleus raphes posterior" EXACT LATIN [FMA:TA] +synonym: "nucleus raphes posterior" RELATED [BTO:0002434] +synonym: "posterior raphe nucleus" EXACT [FMA:68462] +synonym: "posterior raphe nucleus" RELATED [GO:0021724] +xref: BAMS:DR +xref: BIRNLEX:982 +xref: BM:MB-DR +xref: BTO:0002434 +xref: DHBA:12223 +xref: EFO:0001919 +xref: EMAPA:35293 +xref: FMA:68462 +xref: HBA:9457 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=512 {source="BIRNLEX:982"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=512 +xref: http://en.wikipedia.org/wiki/Dorsal_raphe_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0175392 +xref: MA:0002980 +xref: MBA:872 +xref: TAO:0000366 +xref: UMLS:C0175392 {source="BIRNLEX:982"} +xref: ZFA:0000366 +is_a: UBERON:0007415 ! nucleus of midbrain reticular formation +relationship: part_of UBERON:0004684 {source="Wikipedia"} ! raphe nuclei + +[Term] +id: UBERON:0002044 +name: ventral nucleus of posterior commissure +synonym: "Darkshevich nucleus" EXACT [] +synonym: "Darkshevich's nucleus" EXACT [FMA:68464] +synonym: "Dk" BROAD ABBREVIATION [BIRNLEX:896, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus accessorius" RELATED LATIN [NeuroNames:514] +synonym: "nucleus commissurae posterioris (Riley)" RELATED LATIN [NeuroNames:514] +synonym: "nucleus Darkschewitsch" RELATED LATIN [NeuroNames:514] +synonym: "nucleus Darkschewitschi" RELATED LATIN [NeuroNames:514] +synonym: "nucleus fasciculi longitudinalis medialis" RELATED LATIN [NeuroNames:514] +synonym: "nucleus of Darkschewitsch" EXACT [FMA:68464] +synonym: "nucleus of Darkschewitsch (Cajal)" RELATED [NeuroNames:514] +synonym: "nucleus of Darkshevich" RELATED [NeuroNames:514] +synonym: "nucleus of the posterior commissure (Darkschewitsch)" RELATED [NeuroNames:514] +xref: BAMS:Dk +xref: BAMS:ND +xref: BIRNLEX:896 +xref: BM:MB-D +xref: DHBA:12218 +xref: DMBA:16629 +xref: EMAPA:35597 +xref: FMA:68464 +xref: HBA:9047 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=514 {source="BIRNLEX:896"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=514 +xref: http://linkedlifedata.com/resource/umls/id/C0262291 +xref: http://www.snomedbrowser.com/Codes/Details/369250001 +xref: MA:0001072 +xref: MBA:587 +xref: UMLS:C0262291 {source="BIRNLEX:896"} +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus +relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum + +[Term] +id: UBERON:0002045 +name: cuneate nucleus +def: "One of the dorsal column nuclei, the cuneate nucleus is a wedge-shaped nucleus in the closed part of the medulla oblongata. It contains cells that give rise to the cuneate tubercle, visible on the posterior aspect of the medulla. It lies laterally to the gracile nucleus and medial to the spinal trigeminal nucleus in the medulla. [WP,unvetted]." [http://en.wikipedia.org/wiki/Cuneate_nucleus] +subset: uberon_slim +synonym: "Burdach's nucleus" EXACT [] +synonym: "burdachs nucleus" EXACT [BIRNLEX:2640] +synonym: "Cu" BROAD ABBREVIATION [BIRNLEX:2640, NIFSTD:NeuroNames_abbrevSource] +synonym: "cuneate" EXACT [BIRNLEX:2640] +synonym: "cuneate nucleus (Burdach)" RELATED [NeuroNames:767] +synonym: "cuneate nucleus of the medulla" RELATED [NeuroNames:767] +synonym: "nucleus cuneatus" RELATED LATIN [http://en.wikipedia.org/wiki/Cuneate_nucleus] +synonym: "nucleus cuneatus medialis" RELATED LATIN [NeuroNames:767] +synonym: "nucleus restiformis" RELATED LATIN [NeuroNames:767] +xref: BAMS:CU +xref: BAMS:Cu +xref: BIRNLEX:2640 +xref: BM:Me-Cu +xref: Cuneate:nucleus +xref: DHBA:12589 +xref: EMAPA:35268 +xref: FMA:68465 +xref: HBA:9542 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=767 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=767 {source="BIRNLEX:2640"} +xref: http://linkedlifedata.com/resource/umls/id/C0228548 +xref: http://linkedlifedata.com/resource/umls/id/C0587939 +xref: http://www.snomedbrowser.com/Codes/Details/369072005 +xref: MA:0001035 +xref: MBA:711 +xref: NCIT:C52716 +xref: UMLS:C0228548 {source="ncithesaurus:Cuneate_Nucleus"} +xref: UMLS:C0587939 {source="BIRNLEX:2640"} +is_a: UBERON:0018238 {source="ABA", source="ISBN:978-1-4615-0037-7", source="WP"} ! dorsal column nucleus + +[Term] +id: UBERON:0002046 +name: thyroid gland +def: "A two-lobed endocrine gland found in all vertebrates, located in front of and on either side of the trachea in humans, and producing various hormones, such as triiodothyronine and calcitonin[BTO]." [BTO:0001379, http://en.wikipedia.org/wiki/Thyroid] +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "glandula thyroidea" RELATED LATIN [http://en.wikipedia.org/wiki/Thyroid] +synonym: "thyroid" EXACT [] +xref: AAO:0010544 +xref: BTO:0001379 +xref: CALOHA:TS-1047 +xref: EFO:0000861 +xref: EHDAA2:0002028 +xref: EHDAA:2148 +xref: EHDAA:2975 +xref: EMAPA:17068 +xref: EV:0100133 +xref: FMA:9603 +xref: GAID:465 +xref: galen:ThyroidGland +xref: http://en.wikipedia.org/wiki/Thyroid +xref: http://linkedlifedata.com/resource/umls/id/C0040132 +xref: http://www.snomedbrowser.com/Codes/Details/181117000 +xref: MA:0000129 +xref: MAT:0000081 +xref: MESH:D013961 +xref: MIAA:0000081 +xref: NCIT:C12400 +xref: OpenCyc:Mx4rvVjLT5wpEbGdrcN5Y29ycA +xref: UMLS:C0040132 {source="ncithesaurus:Thyroid_Gland"} +xref: VHOG:0000418 +xref: XAO:0000162 +is_a: UBERON:0002368 ! endocrine gland +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0007689 ! thyroid diverticulum +relationship: transformation_of UBERON:0007689 ! thyroid diverticulum + +[Term] +id: UBERON:0002047 +name: pontine raphe nucleus +def: "The pontine raphe nucleus is one of the raphe nuclei. It is located in the pontine tegmentum. [WP,unvetted]." [http://en.wikipedia.org/wiki/Pontine_raphe_nucleus] +subset: pheno_slim +subset: uberon_slim +synonym: "nucleus raphe pontis" RELATED LATIN [NeuroNames:589] +synonym: "nucleus raphes pontis" RELATED LATIN [http://en.wikipedia.org/wiki/Pontine_raphe_nucleus] +synonym: "raphe (mediana pontina)" RELATED LATIN [NeuroNames:589] +synonym: "raphe of pons" EXACT [] +synonym: "raphe pontis" EXACT LATIN [FMA:68875, FMA:TA] +synonym: "raphe pontis nucleus" RELATED [] +xref: BAMS:PnR +xref: BAMS:RA-PONS +xref: BAMS:RPn +xref: BIRNLEX:1110 +xref: DHBA:12471 +xref: DHBA:12475 +xref: FMA:68875 +xref: HBA:9159 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=589 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=589 {source="BIRNLEX:1110"} +xref: http://en.wikipedia.org/wiki/Pontine_raphe_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0175423 +xref: MA:0001022 +xref: MBA:238 +xref: UMLS:C0175423 {source="BIRNLEX:1110"} +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009662 ! hindbrain nucleus +relationship: part_of UBERON:0003023 ! pontine tegmentum +relationship: part_of UBERON:0004684 {source="Wikipedia"} ! raphe nuclei + +[Term] +id: UBERON:0002048 +name: lung +def: "Respiration organ that develops as an outpocketing of the esophagus." [http://orcid.org/0000-0002-6601-2165] +comment: Snakes and limbless lizards typically possess only the right lung as a major respiratory organ; the left lung is greatly reduced, or even absent. Amphisbaenians, however, have the opposite arrangement, with a major left lung, and a reduced or absent right lung [WP] +subset: efo_slim +subset: major_organ +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "pulmo" EXACT LATIN [] +xref: AAO:0000275 +xref: AAO:0010567 +xref: BTO:0000763 +xref: CALOHA:TS-0568 +xref: EFO:0000934 +xref: EHDAA2:0001042 +xref: EHDAA:1554 +xref: EHDAA:2205 +xref: EMAPA:16728 +xref: EV:0100042 +xref: FMA:7195 +xref: GAID:345 +xref: galen:Lung +xref: http://en.wikipedia.org/wiki/Lung +xref: http://linkedlifedata.com/resource/umls/id/C0024109 +xref: http://www.snomedbrowser.com/Codes/Details/181216001 +xref: MA:0000415 +xref: MAT:0000135 +xref: MESH:D008168 +xref: MIAA:0000135 +xref: NCIT:C12468 +xref: OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA +xref: UMLS:C0024109 {source="ncithesaurus:Lung"} +xref: VHOG:0000310 +xref: XAO:0000119 +is_a: UBERON:0000171 ! respiration organ +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0005178 ! thoracic cavity element +is_a: UBERON:0015212 ! lateral structure +relationship: contributes_to_morphology_of UBERON:0001004 ! respiratory system +relationship: develops_from UBERON:0000118 ! lung bud +relationship: in_lateral_side_of UBERON:0000170 ! pair of lungs +relationship: part_of UBERON:0000170 {note="some species only have a single lung"} ! pair of lungs + +[Term] +id: UBERON:0002049 +name: vasculature +def: "An interconnected tubular multi-tissue structure contains fluid that is actively transported around the organism[ZFA]. Examples: vasculature of lung, vasculature of face." [ZFA:0005249] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "vascular network" EXACT [FMA:69050] +xref: BTO:0003718 +xref: FMA:69050 +xref: TAO:0005249 +xref: ZFA:0005249 +is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster +relationship: composed_primarily_of UBERON:0000055 ! vessel +relationship: has_part UBERON:0000179 ! haemolymphatic fluid +relationship: part_of UBERON:0007798 ! vascular system + +[Term] +id: UBERON:0002050 +name: embryonic structure +def: "Anatomical structure that is part of an embryo." [BTO:0000174, ZFIN:curator] +subset: efo_slim +subset: inconsistent_with_fma +subset: vertebrate_core +synonym: "developing embryonic structure" EXACT [FBbt:00004208] +synonym: "developing structure" RELATED [] +synonym: "embryonale Struktur" RELATED [BTO:0000174] +synonym: "embryonic anatomical structure" EXACT [RETIRED_EHDAA2:0003169] +synonym: "embryonic structures" RELATED PLURAL [ZFA:0001105] +xref: AAO:0000138 +xref: BILA:0000034 +xref: BTO:0000174 +xref: CALOHA:TS-2110 +xref: EFO:0000461 +xref: FBbt:00004208 +xref: FMA:69067 +xref: GAID:407 +xref: http://linkedlifedata.com/resource/umls/id/C0013948 +xref: http://www.snomedbrowser.com/Codes/Details/667009 +xref: MESH:D004628 +xref: NCIT:C13229 +xref: RETIRED_EHDAA2:0003169 +xref: TAO:0001105 +xref: UMLS:C0013948 {source="ncithesaurus:Embryonic_Structure"} +xref: VSAO:0000178 +xref: XAO:0003042 +xref: ZFA:0001105 +is_a: UBERON:0005423 ! developing anatomical structure +intersection_of: UBERON:0005423 ! developing anatomical structure +intersection_of: part_of UBERON:0000922 ! embryo +relationship: part_of UBERON:0000922 ! embryo + +[Term] +id: UBERON:0002051 +name: epithelium of bronchiole +def: "An epithelium that is part of a bronchiole [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "bronchiolar epithelium" EXACT [BTO:0001866] +synonym: "bronchiole epithelial tissue" EXACT [OBOL:automatic] +synonym: "bronchiole epithelium" EXACT [] +synonym: "epithelial tissue of bronchiole" EXACT [OBOL:automatic] +synonym: "epithelial tissue of lobular bronchiole" EXACT [OBOL:automatic] +synonym: "epithelium of lobular bronchiole" EXACT [OBOL:automatic] +synonym: "lobular bronchiole epithelial tissue" EXACT [OBOL:automatic] +synonym: "lobular bronchiole epithelium" EXACT [OBOL:automatic] +xref: BTO:0001866 +xref: CALOHA:TS-0570 +xref: EMAPA:32693 +xref: FMA:62497 +xref: FMA:69077 +xref: http://linkedlifedata.com/resource/umls/id/C1181296 +xref: MA:0001772 +xref: NCIT:C48942 +xref: UMLS:C1181296 {source="ncithesaurus:Bronchiole_Epithelium"} +is_a: UBERON:0000115 ! lung epithelium +is_a: UBERON:0002031 ! epithelium of bronchus +is_a: UBERON:0003350 ! epithelium of mucosa +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002186 ! bronchiole +relationship: contributes_to_morphology_of UBERON:0002186 ! bronchiole +relationship: part_of UBERON:0005039 ! mucosa of bronchiole + +[Term] +id: UBERON:0002052 +name: adrenal gland capsule +def: "the thick capsule of dense irregular connective tissue that surrounds each adrenal gland and contains scattered elastic fibers; the capsule contains a rich plexus of blood vessels (mainly small arteries) and numerous nerve fibers; some blood vessels and nerves enter the substance of the gland in the trabeculae that extend inward from the capsule and then leave the trabeculae to enter the cortex." [MP:0013565] +subset: pheno_slim +synonym: "adrenal capsule" RELATED [] +synonym: "capsule of adrenal gland" EXACT [FMA:69087] +xref: FMA:69087 +xref: http://linkedlifedata.com/resource/umls/id/C1181304 +xref: MA:0000117 +xref: NCIT:C32050 +xref: UMLS:C1181304 {source="ncithesaurus:Adrenal_Gland_Capsule"} +is_a: UBERON:0003893 ! capsule +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0003893 ! capsule +intersection_of: bounding_layer_of UBERON:0002369 ! adrenal gland +relationship: bounding_layer_of UBERON:0002369 ! adrenal gland +relationship: composed_primarily_of UBERON:0011822 ! dense irregular connective tissue +relationship: contributes_to_morphology_of UBERON:0001235 ! adrenal cortex +relationship: part_of UBERON:0002369 ! adrenal gland + +[Term] +id: UBERON:0002053 +name: zona glomerulosa of adrenal gland +def: "the narrow subcapsular outer zone of the adrenal cortex where aldosterone is produced" [MESH:A06.407.071.140.960, MGI:llw2, MP:0008293] +subset: pheno_slim +subset: uberon_slim +synonym: "adrenal gland zona glomerulosa" EXACT [MA:0001891] +synonym: "glomerulosa" RELATED [BTO:0000048] +synonym: "zona glomerulosa" EXACT [] +synonym: "zona glomerulosa of suprarenal gland" EXACT [] +xref: BTO:0000048 +xref: CALOHA:TS-0017 +xref: EMAPA:35115 +xref: FMA:69225 +xref: GAID:449 +xref: http://www.snomedbrowser.com/Codes/Details/21476003 +xref: MA:0001891 +xref: MESH:D015384 +xref: Zona:glomerulosa +is_a: UBERON:0009753 {source="MA"} ! adrenal gland cortex zone +relationship: contributes_to_morphology_of UBERON:0001235 ! adrenal cortex + +[Term] +id: UBERON:0002054 +name: zona fasciculata of adrenal gland +def: "the wide middle zone of the adrenal cortex that produces cortisol (hydrocortisone)" [MESH:A06.407.071.140.950, MP:0008294] +subset: pheno_slim +subset: uberon_slim +synonym: "adrenal gland zona fasciculata" EXACT [MA:0001890] +synonym: "zona fasciculata" EXACT [BTO:0000050] +synonym: "zona fasciculata of suprarenal gland" EXACT [] +xref: BTO:0000050 +xref: EMAPA:35114 +xref: FMA:69234 +xref: GAID:448 +xref: http://www.snomedbrowser.com/Codes/Details/56069004 +xref: MA:0001890 +xref: MESH:D015383 +xref: Zona:fasciculata +is_a: UBERON:0009753 {source="MA"} ! adrenal gland cortex zone +relationship: contributes_to_morphology_of UBERON:0001235 ! adrenal cortex + +[Term] +id: UBERON:0002055 +name: zona reticularis of adrenal gland +def: "the inner zone of the adrenal cortex that produces the enzymes that convert pregnenolone, a 21-carbon steroid, to 19-carbon steroids" [MESH:A06.407.071.140.970, MP:0008295] +subset: pheno_slim +subset: uberon_slim +synonym: "adrenal gland zona reticularis" EXACT [MA:0001892] +synonym: "zona reticularis" EXACT [] +synonym: "zona reticularis of suprarenal gland" EXACT [] +xref: BTO:0000056 +xref: EMAPA:35116 +xref: FMA:69236 +xref: GAID:450 +xref: http://www.snomedbrowser.com/Codes/Details/47325000 +xref: MA:0001892 +xref: MESH:D015385 +xref: Zona:reticularis +is_a: UBERON:0009753 {source="MA"} ! adrenal gland cortex zone +relationship: contributes_to_morphology_of UBERON:0001235 ! adrenal cortex + +[Term] +id: UBERON:0002056 +name: inferior suprarenal artery +def: "Each renal artery gives off some small inferior suprarenal branches to the suprarenal gland, the ureter, and the surrounding cellular tissue and muscles. [WP,unvetted]." [http://en.wikipedia.org/wiki/Inferior_suprarenal_artery] +subset: uberon_slim +synonym: "arteria suprarenalis inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_suprarenal_artery] +xref: EMAPA:37088 {source="MA:th"} +xref: FMA:69264 +xref: http://en.wikipedia.org/wiki/Inferior_suprarenal_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226334 +xref: http://www.snomedbrowser.com/Codes/Details/303426004 +xref: MA:0002056 +xref: NCIT:C52737 +xref: UMLS:C0226334 {source="ncithesaurus:Inferior_Suprarenal_Artery"} +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0005624 ! suprarenal artery +intersection_of: UBERON:0005624 ! suprarenal artery +intersection_of: branching_part_of UBERON:0001184 ! renal artery +relationship: branching_part_of UBERON:0001184 ! renal artery +relationship: part_of UBERON:0001184 ! renal artery + +[Term] +id: UBERON:0002057 +name: phrenic artery +def: "An artery that supplies the diaphragm" [https://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +xref: EMAPA:37108 {source="MA:th"} +xref: FMA:69330 +xref: http://linkedlifedata.com/resource/umls/id/C1181536 +xref: MA:0002019 +xref: NCIT:C33320 +xref: UMLS:C1181536 {source="ncithesaurus:Phrenic_Artery"} +is_a: UBERON:0004573 ! systemic artery +intersection_of: UBERON:0004573 ! systemic artery +intersection_of: supplies UBERON:0001103 ! diaphragm +relationship: supplies UBERON:0001103 ! diaphragm + +[Term] +id: UBERON:0002058 +name: main ciliary ganglion +def: "A parasympathetic ganglion located in the posterior orbit that contains preganglionic nerves and postganglionic neurons of the oculomotor nerve, connects to the Edinger-Westphal nucleus via the oculomotor nerve and the eye muscles via the short ciliary nerve." [http://en.wikipedia.org/wiki/Ciliary_ganglion, UBERON:cjm] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "ciliary ganglion" EXACT [MA:0001136] +synonym: "ganglion ciliare" RELATED LATIN [http://en.wikipedia.org/wiki/Ciliary_ganglion] +xref: BAMS:GcIII +xref: Ciliary:ganglion +xref: EFO:0002559 +xref: EHDAA2:0000251 +xref: EHDAA:5623 +xref: EMAPA:18222 +xref: FMA:6964 +xref: http://www.snomedbrowser.com/Codes/Details/279281007 +xref: MA:0001136 +xref: NLXANAT:100304 +xref: VHOG:0000805 +is_a: UBERON:0001714 ! cranial ganglion +is_a: UBERON:0035783 ! ganglion of ciliary nerve +intersection_of: UBERON:0001808 ! parasympathetic ganglion +intersection_of: extends_fibers_into UBERON:0001643 ! oculomotor nerve +intersection_of: extends_fibers_into UBERON:0022302 ! short ciliary nerve +relationship: extends_fibers_into UBERON:0001643 ! oculomotor nerve +relationship: part_of UBERON:0035639 {source="http://orcid.org/0000-0001-9114-8737", source="inferred"} ! ocular adnexa + +[Term] +id: UBERON:0002059 +name: submandibular ganglion +def: "the ganglion associated with the lingual nerve that provides postsynaptic fibers to the submandibular and sublingual glands" [ISBN:0-683-40008-8, MP:0001035] +subset: pheno_slim +subset: uberon_slim +synonym: "Blandin`s ganglion" RELATED [BTO:0001318] +synonym: "ganglion submandibulare" RELATED [BTO:0001318] +synonym: "ganglion submandibulare" RELATED LATIN [http://en.wikipedia.org/wiki/Submandibular_ganglion] +synonym: "lingual ganglion" RELATED [https://sourceforge.net/tracker/index.php?func=detail&aid=2979467&group_id=76834&atid=1205376, MA:0002470] +synonym: "mandibular ganglion" EXACT SENSU [UBERON:cjm] +synonym: "maxillary ganglion" RELATED [MA:0002470] +synonym: "submaxillary ganglion" RELATED [MA:0002470] +xref: BTO:0001318 +xref: EHDAA2:0001942 +xref: EHDAA:6710 +xref: EMAPA:36276 +xref: FMA:6966 +xref: http://linkedlifedata.com/resource/umls/id/C0229063 +xref: http://www.snomedbrowser.com/Codes/Details/279282000 +xref: MA:0002470 +xref: NCIT:C52558 +xref: Submandibular:ganglion +xref: UMLS:C0229063 {source="ncithesaurus:Submandibular_Ganglion"} +is_a: UBERON:0001808 ! parasympathetic ganglion +intersection_of: UBERON:0000045 ! ganglion +intersection_of: extends_fibers_into UBERON:0001736 ! submandibular gland +relationship: extends_fibers_into UBERON:0001736 ! submandibular gland +relationship: extends_fibers_into UBERON:0003721 ! lingual nerve + +[Term] +id: UBERON:0002060 +name: femoral artery +def: "The femoral artery is a large artery in the muscles of the thigh. It is a continuation of external iliac artery where it enters the femoral triangle at the mid inguinal point behind the inguinal ligament. It leaves femoral triangle through apex beneath the sartorius muscle. It enters the popliteal fossa by passing through the 5th osseo-aponeurotic(adductor hiatus) opening of adductor magnus where it becomes the Popliteal Artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/Femoral_artery] +subset: uberon_slim +synonym: "arteria femoralis" RELATED LATIN [http://en.wikipedia.org/wiki/Femoral_artery] +xref: AAO:0010222 +xref: BTO:0001624 +xref: CALOHA:TS-0321 +xref: EMAPA:35342 +xref: Femoral:artery +xref: FMA:70248 +xref: GAID:494 +xref: galen:FemoralArtery +xref: http://linkedlifedata.com/resource/umls/id/C0015801 +xref: http://www.snomedbrowser.com/Codes/Details/244332003 +xref: MA:0001951 +xref: MESH:D005263 +xref: NCIT:C12715 +xref: OpenCyc:Mx4rwHMI05wpEbGdrcN5Y29ycA +xref: UMLS:C0015801 {source="ncithesaurus:Femoral_Artery"} +is_a: UBERON:0004573 ! systemic artery +relationship: branching_part_of UBERON:0001308 {source="FMA", source="WP"} ! external iliac artery +relationship: part_of UBERON:0001308 ! external iliac artery + +[Term] +id: UBERON:0002061 +name: truncus arteriosus +def: "The truncus arteriosus and bulbus cordis are divided by the aorticopulmonary septum. The truncus arteriosus gives rise to the ascending aorta and the pulmonary trunk. The bulbus cordis gives rise to the smooth parts (outflow tract) of the left and right ventricles." [http://en.wikipedia.org/wiki/Truncus_arteriosus_(embryology)] +subset: uberon_slim +xref: EHDAA2:0004143 +xref: EMAPA:35887 +xref: FMA:70301 +xref: GAID:554 +xref: http://en.wikipedia.org/wiki/Truncus_arteriosus_(embryology) +xref: http://linkedlifedata.com/resource/umls/id/C1519589 +xref: http://www.snomedbrowser.com/Codes/Details/308828009 +xref: MA:0000103 +xref: MESH:D014338 +xref: NCIT:C34317 +xref: OpenCyc:Mx4rquH9YKgNEdudWQACs5b6Bw +xref: UMLS:C1519589 {source="ncithesaurus:Trancus_Arteriosus"} +is_a: UBERON:0001637 {source="EHDAA2"} ! artery +is_a: UBERON:0002050 {source="FMA"} ! embryonic structure +is_a: UBERON:0003498 ! heart blood vessel +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0005432 {source="EHDAA2"} ! aortic sac +relationship: part_of UBERON:0004145 {source="MA"} ! outflow tract +relationship: part_of UBERON:0005498 {source="EHDAA2"} ! primitive heart tube + +[Term] +id: UBERON:0002062 +name: endocardial cushion +def: "The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves[GO]. Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves[ZFA]." [GO:0003197, http://en.wikipedia.org/wiki/Atrioventricular_cushions, ZFIN:curator] +comment: GO graph seems to suggest this is an endothelium. WP: The endocardial cushions are thought to arise from a subset of endothelial cells that undergo epithelial to mesenchymal transformation, a process whereby these cells break cell-to-cell contacts and migrate into the cardiac jelly (towards to interior of the heart tube). Latest (2010-06-01) new def suggested for GO, added above. Note that EHDAA2 has a more detailed model which we may later adopt. JB: Patterning makes the cushions lay down connective tissue in three domains that force out the local endothelial lining and so the leaflets form +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "atrioventricular canal cushion" RELATED [FMA:70302] +synonym: "atrioventricular cushion" EXACT [http://en.wikipedia.org/wiki/Endocardial_cushion] +synonym: "AV cushion" EXACT [] +synonym: "cardiac cushion" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/15797462] +synonym: "endocardial cushion tissue" EXACT [EHDAA2:0000434] +synonym: "endocardial cushions" RELATED PLURAL [] +xref: Atrioventricular:cushions +xref: EHDAA2:0000434 +xref: EHDAA2:0004028 +xref: EHDAA:2586 +xref: EMAPA:16696 +xref: FMA:70302 +xref: MA:0000078 +xref: TAO:0001317 +xref: VHOG:0000932 +xref: XAO:0004189 +xref: ZFA:0001317 +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:0005256 ! trunk mesenchyme +is_a: UBERON:0009751 ! cardiac mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +relationship: part_of UBERON:0002165 {source="ZFA"} ! endocardium + +[Term] +id: UBERON:0002063 +name: sinus venosus +def: "The sinus venosus is a large cardiac chamber at the inflow tract that receives venous blood from systemic circulation. precedes the atrium on the venous side of the chordate heart." [http://en.wikipedia.org/wiki/Sinus_venosus, http://www.ncbi.nlm.nih.gov/pubmed/20735616] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "inflow tract" BROAD [ZFA:0000154] +synonym: "sinus venarum" RELATED [http://en.wikipedia.org/wiki/Sinus_venosus] +synonym: "sinus venosus cordis" RELATED LATIN [http://en.wikipedia.org/wiki/Sinus_venosus] +synonym: "venarum" RELATED [http://en.wikipedia.org/wiki/Sinus_venosus] +synonym: "venarum sinus" RELATED [http://en.wikipedia.org/wiki/Sinus_venosus] +synonym: "venosus" RELATED [http://en.wikipedia.org/wiki/Sinus_venosus] +xref: AAO:0010505 +xref: EHDAA2:0001839 +xref: EHDAA:480 +xref: EMAPA:16237 +xref: FMA:70303 +xref: http://linkedlifedata.com/resource/umls/id/C0225857 +xref: http://linkedlifedata.com/resource/umls/id/C0231084 +xref: NCIT:C34299 +xref: NCIT:C34300 +xref: Sinus:venosus +xref: TAO:0000154 +xref: UMLS:C0225857 {source="ncithesaurus:Sinus_Venarum"} +xref: UMLS:C0231084 {source="ncithesaurus:Sinus_Venosus"} +xref: VHOG:0000177 +xref: ZFA:0000154 +is_a: UBERON:0004151 ! cardiac chamber +disjoint_from: UBERON:0006615 ! venous sinus +relationship: develops_from UBERON:0007278 ! presumptive sinus venosus +relationship: immediate_transformation_of UBERON:0007278 {source="Bgee:AN"} ! presumptive sinus venosus +relationship: part_of UBERON:0002350 {source="VHOG"} ! conducting system of heart + +[Term] +id: UBERON:0002064 +name: common cardinal vein +def: "Either of a pair of large transverse venous sinuses that conduct blood from the cardinal veins to the sinus venosus of the vertebrate embryo[BTO]." [BTO:0004388, http://en.wikipedia.org/wiki/Common_cardinal_veins] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "Cuvierian duct" RELATED [] +synonym: "duct of Cuvier" RELATED [] +synonym: "future coronary sinus" RELATED [EMAPA:16356] +xref: AAO:0011033 +xref: BTO:0004388 +xref: EHDAA:1314 +xref: EMAPA:16356 +xref: FMA:70308 +xref: http://en.wikipedia.org/wiki/Common_cardinal_veins +xref: http://linkedlifedata.com/resource/umls/id/C0231083 +xref: http://www.snomedbrowser.com/Codes/Details/308783008 +xref: NCIT:C34130 +xref: TAO:0000186 +xref: UMLS:C0231083 {source="ncithesaurus:Common_Cardinal_Vein"} +xref: VHOG:0000112 +xref: XAO:0000373 +xref: ZFA:0000186 +is_a: UBERON:0002050 {source="FMA"} ! embryonic structure +is_a: UBERON:0003513 ! trunk blood vessel +is_a: UBERON:0004344 ! cardinal vein +relationship: part_of UBERON:0002201 ! vasculature of trunk + +[Term] +id: UBERON:0002065 +name: posterior cardinal vein +def: "One of two paired cardinal veins that return blood from the body of the embryo[Kardong]" [http://en.wikipedia.org/wiki/Posterior_cardinal_vein, ISBN:0073040584] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "axial vein" RELATED [] +synonym: "caudal cardinal veins" RELATED [] +synonym: "inferior cardinal vein" RELATED [http://www.embryology.ch/anglais/pcardio/venen01.html] +synonym: "PCV" RELATED [] +synonym: "postcardinal vein" RELATED [AAO:0010511, FMA:70314, http://en.wikipedia.org/wiki/Posterior_cardinal_vein] +xref: AAO:0010511 +xref: BTO:0004386 +xref: EHDAA2:0001486 +xref: EHDAA:1316 +xref: EMAPA:16357 +xref: FMA:70314 +xref: http://en.wikipedia.org/wiki/Posterior_cardinal_vein +xref: http://linkedlifedata.com/resource/umls/id/C0231087 +xref: http://www.snomedbrowser.com/Codes/Details/308781005 +xref: NCIT:C34257 +xref: TAO:0000477 +xref: UMLS:C0231087 {source="ncithesaurus:Posterior_Cardinal_Vein"} +xref: VHOG:0000111 +xref: XAO:0000241 +xref: ZFA:0000477 +is_a: UBERON:0003513 ! trunk blood vessel +is_a: UBERON:0004344 ! cardinal vein +disjoint_from: UBERON:0003087 {source="lexical"} ! anterior cardinal vein +relationship: channels_from UBERON:0002201 ! vasculature of trunk +relationship: part_of UBERON:0002201 ! vasculature of trunk + +[Term] +id: UBERON:0002066 +name: umbilical vein +def: "The umbilical vein is a blood vessel present during fetal development that carries oxygenated blood from the placenta to the growing fetus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Umbilical_vein, https://github.com/obophenotype/uberon/issues/328] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "vena umbilicalis" RELATED LATIN [http://en.wikipedia.org/wiki/Umbilical_vein] +xref: BTO:0001509 +xref: CALOHA:TS-1082 +xref: EFO:0001940 +xref: EHDAA:1034 +xref: EHDAA:488 +xref: EMAPA:16243 +xref: EMAPA:16375 +xref: EV:0100392 +xref: FMA:70317 +xref: GAID:542 +xref: http://linkedlifedata.com/resource/umls/id/C0041637 +xref: http://www.snomedbrowser.com/Codes/Details/367567000 +xref: MA:0002249 +xref: MESH:D014471 +xref: NCIT:C33830 +xref: OpenCyc:Mx4rdu17MmWaEd2AAABQjYGu0g +xref: RETIRED_EHDAA2:0002107 +xref: Umbilical:vein +xref: UMLS:C0041637 {source="ncithesaurus:Umbilical_Vein"} +is_a: UBERON:0001638 ! vein +is_a: UBERON:0010260 ! umbilical blood vessel + +[Term] +id: UBERON:0002067 +name: dermis +def: "The dermis is a layer of skin between the epidermis (with which it makes up the skin) and subcutaneous tissues, and is composed of two layers, the papillary and reticular dermis[WP]." [http://en.wikipedia.org/wiki/Dermis, ZFIN:curator] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "corium" RELATED [BTO:0000294] +synonym: "corium" RELATED LATIN [http://en.wikipedia.org/wiki/Dermis] +synonym: "cutis" RELATED [BTO:0000294] +synonym: "vertebrate dermis" EXACT [] +xref: AAO:0000128 +xref: BTO:0000294 +xref: CALOHA:TS-2076 +xref: EFO:0000953 +xref: EMAPA:17527 +xref: EV:0100154 +xref: FMA:70323 +xref: GAID:1321 +xref: http://en.wikipedia.org/wiki/Dermis +xref: http://linkedlifedata.com/resource/umls/id/C0011646 +xref: http://www.snomedbrowser.com/Codes/Details/361696001 +xref: MA:0000152 +xref: MAT:0000153 +xref: MESH:D020405 +xref: MIAA:0000153 +xref: NCIT:C12701 +xref: TAO:0001119 +xref: UMLS:C0011646 {source="ncithesaurus:Dermis"} +xref: VHOG:0000108 +xref: XAO:0000217 +xref: ZFA:0001119 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0013754 ! integumentary system layer +relationship: composed_primarily_of UBERON:0002384 ! connective tissue +relationship: deep_to UBERON:0001003 ! skin epidermis +relationship: develops_from UBERON:0010083 ! future dermis +relationship: has_part UBERON:0011860 ! collection of collagen fibrils +relationship: immediate_transformation_of UBERON:0010083 {evidence="definitional"} ! future dermis +relationship: part_of UBERON:0002097 {source="FMA"} ! skin of body +relationship: superficial_to UBERON:0002072 ! hypodermis + +[Term] +id: UBERON:0002068 +name: urachus +def: "A fibrous remnant of the allantoic stalk, a narrow fetal canal connecting the apex of the urinary bladder with the umbilicus located in the space of Retzius, between the transversalis fascia anteriorly and the peritoneum posteriorly. its lumen is normally obliterated during development, transforming the urachus into a solid cord, a functionless remnant that persists throughout life as the median umbilical ligament; failure of complete lumen obliteration may result in distinct congenital urachal remnant anomalies[MP]." [MP:0011852, MP:anna] +subset: pheno_slim +subset: uberon_slim +xref: EHDAA2:0002137 +xref: EHDAA:7016 +xref: EHDAA:9332 +xref: EMAPA:18323 +xref: FMA:70343 +xref: GAID:1313 +xref: http://en.wikipedia.org/wiki/Urachus +xref: http://linkedlifedata.com/resource/umls/id/C0041916 +xref: http://www.snomedbrowser.com/Codes/Details/276858000 +xref: MA:0001701 +xref: MESH:A16.254.835 +xref: NCIT:C12338 +xref: RETIRED_EHDAA2:0002138 +xref: UMLS:C0041916 {source="ncithesaurus:Urachus"} +xref: VHOG:0000735 +is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: continuous_with UBERON:0007118 ! umbilicus +relationship: develops_from UBERON:0004340 {source="EHDAA2"} ! allantois +relationship: part_of UBERON:0001255 {source="EHDAA2"} ! urinary bladder + +[Term] +id: UBERON:0002069 +name: stratum granulosum of epidermis +def: "the layer of flattened cells containing basophilic granules of keratohyalin and lying just above the stratum spinosum (spiny layer) of the epidermis" [ISBN:0-683-40008-8, MP:0001239] +subset: pheno_slim +synonym: "epidermis granular layer" RELATED [] +synonym: "epidermis stratum granulosum" EXACT [] +synonym: "granular layer of epidermis" EXACT [FMA:70344] +synonym: "stratum granulosum" EXACT [BTO:0000361] +xref: BTO:0000361 +xref: EMAPA:32786 +xref: FMA:70344 +xref: http://linkedlifedata.com/resource/umls/id/C0221923 +xref: http://www.snomedbrowser.com/Codes/Details/418563001 +xref: MA:0000805 +xref: NCIT:C33627 +xref: Stratum:granulosum +xref: UMLS:C0221923 {source="ncithesaurus:Stratum_Granulosum"} +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0013754 ! integumentary system layer +relationship: immediately_superficial_to UBERON:0002026 ! stratum spinosum of epidermis +relationship: part_of UBERON:0001003 ! skin epidermis + +[Term] +id: UBERON:0002070 +name: superior pancreaticoduodenal artery +def: "The superior pancreaticoduodenal artery is an artery that supplies blood to the duodenum and pancreas. It is a branch of the gastroduodenal artery, which comes from the common hepatic artery of the celiac trunk. The common hepatic itself becomes the proper hepatic after giving off the gastroduodenal artery and goes on to supply the right and left lobes of the liver. The term superior distinguishes the superior pancreaticoduodenal artery from the inferior pancreaticoduodenal artery, which a branch of the superior mesenteric artery. These arteries, together with the pancreatic branches of the splenic artery, form connections or anastomoses with one another, allowing blood to perfuse the pancreas and duodenum through multiple channels. The artery splits into two branches: the anterior superior pancreaticoduodenal artery supplies the anterior margins of the duodenum and pancreas the posterior superior pancreaticoduodenal artery supplies the posterior margins of these organs [WP,unvetted]." [http://en.wikipedia.org/wiki/Superior_pancreaticoduodenal_artery] +subset: uberon_slim +synonym: "arteria pancreaticoduodenalis superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_pancreaticoduodenal_artery] +synonym: "bauchspeicheldrüsenzwölffingerdarmpulsader@de" EXACT [http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Terminology.shtml] +synonym: "superior pancreatico-duodenal artery" EXACT [] +synonym: "superior pancreatoduodenal artery" EXACT [http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Terminology.shtml] +xref: EMAPA:37121 {source="MA:th"} +xref: FMA:70437 +xref: http://en.wikipedia.org/wiki/Superior_pancreaticoduodenal_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226317 +xref: http://www.snomedbrowser.com/Codes/Details/244272009 +xref: MA:0002015 +xref: NCIT:C52742 +xref: UMLS:C0226317 {source="ncithesaurus:Superior_Pancreatico-Duodenal_Artery"} +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0009658 ! pancreaticoduodenal artery +relationship: part_of UBERON:0010132 ! gastroduodenal artery +relationship: supplies UBERON:0002108 ! small intestine + +[Term] +id: UBERON:0002071 +name: stratum lucidum of epidermis +def: "The layer of lightly staining corneocytes found between the stratum granulosum and stratum corneum layers; found primarily in the thick epidermis of the palmar and plantar skin and is composed of three to five layers of dead, flattened keratinocytes." [http://en.wikipedia.org/wiki/Stratum_lucidum, MP:0009610] +comment: Located between the stratum granulosum and stratum corneum layers, it is composed of three to five layers of dead, flattened keratinocytes. The keratinocytes of the stratum lucidum do not feature distinct boundaries and are filled with eleidin, an intermediate form of keratin. +subset: pheno_slim +synonym: "epidermis stratum lucidum" EXACT [] +synonym: "stratum conjunctum of epidermis" EXACT [] +synonym: "stratum lucidum" BROAD [BTO:0000364] +xref: BTO:0000364 +xref: EMAPA:35314 +xref: FMA:70540 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1777 +xref: http://linkedlifedata.com/resource/umls/id/C0221922 +xref: http://linkedlifedata.com/resource/umls/id/C1514985 +xref: http://www.snomedbrowser.com/Codes/Details/419156002 +xref: MA:0000806 +xref: NCIT:C33624 +xref: NCIT:C33629 +xref: Stratum:lucidum +xref: UMLS:C0221922 {source="ncithesaurus:Stratum_Lucidum"} +xref: UMLS:C1514985 {source="ncithesaurus:Stratum_Conjunctum"} +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0013754 ! integumentary system layer +relationship: immediately_deep_to UBERON:0002027 ! stratum corneum of epidermis +relationship: immediately_superficial_to UBERON:0002069 ! stratum granulosum of epidermis +relationship: part_of UBERON:0001003 ! skin epidermis + +[Term] +id: UBERON:0002072 +name: hypodermis +def: "Lowermost layer of the integumentary system in vertebrates. Types of cells that are found in the hypodermis are fibroblasts, adipose cells, and macrophages. It is derived from the mesoderm, but unlike the dermis, it is not derived from the dermatome region of the mesoderm. The hypodermis is used mainly for fat storage[WP]." [http://en.wikipedia.org/wiki/Hypodermis] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "hypoderm" EXACT [] +synonym: "sub-tegumental tissue" RELATED [BTO:0004525] +synonym: "subcutaneous tissue" RELATED [http://en.wikipedia.org/wiki/Hypodermis] +synonym: "subcutis" RELATED [] +synonym: "subtegumental tissue" RELATED [BTO:0004525] +synonym: "superficial fascia" RELATED INCONSISTENT [] +synonym: "tela subcutanea" RELATED LATIN [http://en.wikipedia.org/wiki/Hypodermis] +synonym: "vertebrate hypodermis" EXACT [] +xref: BTO:0001314 +xref: CALOHA:TS-2366 +xref: EMAPA:37505 {source="MA:th"} +xref: FMA:70544 +xref: http://en.wikipedia.org/wiki/Hypodermis +xref: http://linkedlifedata.com/resource/umls/id/C0278403 +xref: NCIT:C33645 +xref: TAO:0001136 +xref: UMLS:C0278403 {source="ncithesaurus:Subcutis"} +xref: ZFA:0001136 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0013754 ! integumentary system layer +relationship: composed_primarily_of UBERON:0001013 ! adipose tissue +relationship: composed_primarily_of UBERON:0011825 {source="FMA-modified"} ! loose connective tissue +relationship: deep_to UBERON:0002067 ! dermis +relationship: part_of UBERON:0002199 {source="ZFA"} ! integument +relationship: superficial_to UBERON:0001015 ! musculature + +[Term] +id: UBERON:0002073 +name: hair follicle +def: "A tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open[GO]." [http://en.wikipedia.org/wiki/Hair_follicle] +comment: Development notes:Formation largely takes place during fetal and perinatal skin development. However, after skin wounding de novo hair follicle formation may also occur in adult mouse and rabbit skin[DOI:10.1016/j.cub.2008.12.005]. +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "folliculus pili" RELATED LATIN [http://en.wikipedia.org/wiki/Hair_follicle] +xref: BTO:0000554 +xref: CALOHA:TS-0432 +xref: EFO:0002464 +xref: EMAPA:18771 +xref: EMAPA:29741 +xref: EV:0100156 +xref: FMA:70660 +xref: GAID:934 +xref: Hair:follicle +xref: http://linkedlifedata.com/resource/umls/id/C0221971 +xref: http://www.snomedbrowser.com/Codes/Details/280830006 +xref: MA:0000154 +xref: MESH:D018859 +xref: NCIT:C13317 +xref: OpenCyc:Mx4rvVjOI5wpEbGdrcN5Y29ycA +xref: UMLS:C0221971 {source="ncithesaurus:Hair_Follicle"} +xref: VHOG:0001268 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0036150 ! skin appendage follicle +relationship: develops_from UBERON:0005086 ! hair follicle placode +relationship: part_of UBERON:0001003 {source="FMA"} ! skin epidermis +relationship: part_of UBERON:0011932 {source="https://doi.org/10.1016/j.cub.2008.12.005"} ! pilosebaceous unit + +[Term] +id: UBERON:0002074 +name: hair shaft +def: "The main part of the hair which is composed of trichocytes and is divided into the cortex and medulla." [https://doi.org/10.1016/j.cub.2008.12.005] +subset: pheno_slim +synonym: "scapus pili" RELATED [BTO:0004672] +synonym: "shaft of hair" EXACT [] +xref: BTO:0004672 +xref: EMAPA:36498 +xref: FMA:70728 +xref: http://linkedlifedata.com/resource/umls/id/C0221961 +xref: http://www.snomedbrowser.com/Codes/Details/361359004 +xref: MA:0000159 +xref: NCIT:C33543 +xref: UMLS:C0221961 {source="ncithesaurus:Shaft_of_the_Hair"} +is_a: UBERON:0000021 ! cutaneous appendage +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001037 {source="https://doi.org/10.1016/j.cub.2008.12.005"} ! strand of hair + +[Term] +id: UBERON:0002075 +name: viscus +def: "An organ that is located within the body cavity (or in its extension, in the scrotum); it consists of organ parts that are embryologically derived from endoderm, splanchnic mesoderm or intermediate mesoderm; together with other organs, the viscus constitutes the respiratory, gastrointestinal, urinary, reproductive and immune systems, or is the central organ of the cardiovascular system. Examples: heart, lung, esophagus, kidney, ovary, spleen." [BTO:0001491, http://en.wikipedia.org/wiki/Viscus, https://github.com/obophenotype/mouse-anatomy-ontology/issues/14] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: upper_level +synonym: "Organsystem@de" RELATED [BTO:0001491] +synonym: "splanchnic tissue" RELATED [BTO:0001491] +synonym: "viscera" RELATED [] +synonym: "visceral organ" EXACT [RETIRED_EHDAA2:0002201] +synonym: "visceral organ system" EXACT [MA:0000019] +synonym: "visceral tissue" RELATED [BTO:0001491] +xref: AAO:0010386 +xref: BTO:0001491 +xref: EHDAA:512 +xref: EMAPA:16245 +xref: FMA:7085 +xref: http://en.wikipedia.org/wiki/Viscus +xref: http://linkedlifedata.com/resource/umls/id/C0042779 +xref: http://www.snomedbrowser.com/Codes/Details/118760003 +xref: MA:0000019 +xref: MESH:D014781 +xref: NCIT:C28287 +xref: RETIRED_EHDAA2:0002201 +xref: UMLS:C0042779 {source="ncithesaurus:Viscera"} +xref: XAO:0003034 +is_a: UBERON:0005177 ! trunk region element +intersection_of: UBERON:0000062 ! organ +intersection_of: located_in UBERON:0002323 ! coelemic cavity lumen +relationship: located_in UBERON:0002323 ! coelemic cavity lumen + +[Term] +id: UBERON:0002076 +name: cuticle of hair +def: "smooth and glossy outer protective cell layer of hair shaft" [MGI:llw2, MP:0003810] +subset: pheno_slim +synonym: "hair cuticle" EXACT [] +xref: EMAPA:35388 +xref: FMA:70933 +xref: MA:0000157 +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000119 ! cell layer +intersection_of: bounding_layer_of UBERON:0002074 ! hair shaft +relationship: bounding_layer_of UBERON:0002074 ! hair shaft +relationship: part_of UBERON:0002074 ! hair shaft + +[Term] +id: UBERON:0002077 +name: cortex of hair +def: "A cortex that is part of a hair [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "coat hair cortex" EXACT [OBOL:automatic] +synonym: "coat/hair cortex" EXACT [OBOL:automatic] +synonym: "cortex of coat hair" EXACT [OBOL:automatic] +synonym: "cortex of coat/hair" EXACT [OBOL:automatic] +synonym: "hair cortex" EXACT [] +xref: EMAPA:35387 +xref: FMA:70934 +xref: http://www.snomedbrowser.com/Codes/Details/318832008 +xref: MA:0000156 +is_a: UBERON:0001851 ! cortex +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001851 ! cortex +intersection_of: part_of UBERON:0001037 ! strand of hair +relationship: part_of UBERON:0002074 ! hair shaft + +[Term] +id: UBERON:0002078 +name: right cardiac atrium +def: "A cardiac atrium that is in the left side of the heart. It receives deoxygenated blood. In mammals, this comes from the superior and inferior vena cava and the coronary sinus, and pumps it into the right ventricle through the tricuspid valve." [http://en.wikipedia.org/wiki/Right_atrium, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "atrium dextrum" RELATED LATIN [http://en.wikipedia.org/wiki/Right_atrium] +synonym: "cardiac right atrium" EXACT [] +synonym: "heart right atrium" EXACT [MA:0000075] +synonym: "right atrium" EXACT [VHOG:0000328] +synonym: "right atrium of heart" EXACT [] +synonym: "right cardiac atrium" EXACT [] +xref: AAO:0010248 +xref: BTO:0001703 +xref: EHDAA2:0000290 +xref: EMAPA:17321 +xref: FMA:7096 +xref: galen:RightAtrium +xref: http://linkedlifedata.com/resource/umls/id/C0225844 +xref: http://www.snomedbrowser.com/Codes/Details/244383003 +xref: MA:0000075 +xref: NCIT:C12868 +xref: OpenCyc:Mx4runNcs6fqEdudWQACs5b6Bw +xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rDJ89oqgPEdudWQACs5b6Bw +xref: Right:atrium +xref: UMLS:C0225844 {source="ncithesaurus:Right_Atrium"} +xref: VHOG:0000328 +xref: XAO:0003192 +is_a: UBERON:0002081 ! cardiac atrium +is_a: UBERON:0035554 ! right cardiac chamber +intersection_of: UBERON:0002081 ! cardiac atrium +intersection_of: in_right_side_of UBERON:0000948 ! heart + +[Term] +id: UBERON:0002079 +name: left cardiac atrium +def: "A cardiac atrium that is in the left side of the heart. It receives oxygenated blood from the pulmonary veins, In mammals this is pumped into the left ventricle, via the Mitral valve." [http://en.wikipedia.org/wiki/Left_atrium, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "atrium sinistrum" EXACT LATIN [http://en.wikipedia.org/wiki/Left_atrium] +synonym: "cardiac left atrium" EXACT [] +synonym: "heart left atrium" EXACT [MA:0000074] +synonym: "left atrium" EXACT [VHOG:0000369] +synonym: "left atrium of heart" EXACT [] +synonym: "left cardiac atrium" EXACT [] +xref: AAO:0010247 +xref: BTO:0001702 +xref: EHDAA2:0000275 +xref: EMAPA:17315 +xref: FMA:7097 +xref: galen:LeftAtrium +xref: http://linkedlifedata.com/resource/umls/id/C0225860 +xref: http://www.snomedbrowser.com/Codes/Details/244387002 +xref: Left:atrium +xref: MA:0000074 +xref: NCIT:C12869 +xref: OpenCyc:Mx4rkJN1AagEEdudWQACs5b6Bw +xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rDJ89oqgPEdudWQACs5b6Bw +xref: UMLS:C0225860 {source="ncithesaurus:Left_Atrium"} +xref: VHOG:0000369 +xref: XAO:0003191 +is_a: UBERON:0002081 ! cardiac atrium +is_a: UBERON:0035553 ! left cardiac chamber +intersection_of: UBERON:0002081 ! cardiac atrium +intersection_of: in_left_side_of UBERON:0000948 ! heart + +[Term] +id: UBERON:0002080 +name: heart right ventricle +def: "A cardiac ventricle that is in the right side of the heart." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "cardiac right ventricle" EXACT [] +synonym: "right cardiac ventricle" RELATED [EMAPA:17340] +synonym: "right ventricle" EXACT [FMA:7098] +synonym: "right ventricle of heart" EXACT [] +synonym: "ventriculus dexter" RELATED LATIN [http://en.wikipedia.org/wiki/Right_ventricle] +xref: BTO:0001630 +xref: CALOHA:TS-0443 +xref: EHDAA2:0000196 +xref: EMAPA:17340 +xref: FMA:7098 +xref: galen:RightVentricle +xref: http://linkedlifedata.com/resource/umls/id/C0225883 +xref: http://www.snomedbrowser.com/Codes/Details/244384009 +xref: MA:0000093 +xref: NCIT:C12870 +xref: OpenCyc:Mx4rRMlc0KgNEdudWQACs5b6Bw +xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvVjj1pwpEbGdrcN5Y29ycA +xref: Right:ventricle +xref: UMLS:C0225883 {source="ncithesaurus:Right_Ventricle"} +xref: VHOG:0000717 +is_a: UBERON:0002082 ! cardiac ventricle +is_a: UBERON:0035554 ! right cardiac chamber +intersection_of: UBERON:0002082 ! cardiac ventricle +intersection_of: in_right_side_of UBERON:0000948 ! heart +relationship: develops_from UBERON:0009889 {source="http://www.ncbi.nlm.nih.gov/pubmed/17276708"} ! secondary heart field +relationship: has_developmental_contribution_from UBERON:0004706 {source="cjm"} ! bulbus cordis + +[Term] +id: UBERON:0002081 +name: cardiac atrium +def: "Cardiac chamber in which blood enters the heart." [http://en.wikipedia.org/wiki/Heart_atrium, http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "atria" EXACT PLURAL [] +synonym: "atrial tissue" RELATED [BTO:0000903] +synonym: "atrium" EXACT [ZFA:0000471] +synonym: "atrium of heart" EXACT [] +synonym: "cardiac atria" EXACT PLURAL [] +synonym: "heart atrium" EXACT [] +xref: AAO:0010246 +xref: BTO:0000903 +xref: CALOHA:TS-0437 +xref: EFO:0000277 +xref: EHDAA2:0000154 +xref: EHDAA:1265 +xref: EMAPA:16688 +xref: EV:0100019 +xref: FMA:7099 +xref: GAID:555 +xref: galen:Atrium +xref: Heart:atrium +xref: http://linkedlifedata.com/resource/umls/id/C0018792 +xref: http://www.snomedbrowser.com/Codes/Details/261405004 +xref: MA:0000073 +xref: MAT:0000496 +xref: MESH:D006325 +xref: NCIT:C12728 +xref: TAO:0000471 +xref: UMLS:C0018792 {source="ncithesaurus:Cardiac_Atrium"} +xref: VHOG:0000175 +xref: ZFA:0000471 +is_a: UBERON:0004151 ! cardiac chamber +relationship: contributes_to_morphology_of UBERON:0000948 ! heart +relationship: develops_from UBERON:0010227 ! future cardiac atrium +relationship: immediate_transformation_of UBERON:0010227 ! future cardiac atrium + +[Term] +id: UBERON:0002082 +name: cardiac ventricle +def: "Cardiac chamber through which blood leaves the heart." [http://en.wikipedia.org/wiki/Ventricle_(heart), http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "heart ventricle" EXACT [] +synonym: "lower chamber of heart" EXACT [] +synonym: "ventricle" BROAD [] +synonym: "ventricle of heart" EXACT [] +xref: AAO:0010249 +xref: BTO:0000862 +xref: CALOHA:TS-0444 +xref: EFO:0000317 +xref: EHDAA2:0004164 +xref: EHDAA:1912 +xref: EMAPA:17331 +xref: EV:0100020 +xref: FMA:7100 +xref: GAID:568 +xref: galen:Ventricle +xref: http://linkedlifedata.com/resource/umls/id/C0018827 +xref: http://www.snomedbrowser.com/Codes/Details/277699000 +xref: MA:0000091 +xref: MAT:0000497 +xref: MESH:D006352 +xref: NCIT:C12730 +xref: OpenCyc:Mx4rvVjj1pwpEbGdrcN5Y29ycA +xref: TAO:0000009 +xref: UMLS:C0018827 {source="ncithesaurus:Cardiac_Ventricle"} +xref: Ventricle:(heart) +xref: VHOG:0000435 +xref: XAO:0003193 +xref: ZFA:0000009 +is_a: UBERON:0004151 ! cardiac chamber +relationship: contributes_to_morphology_of UBERON:0000948 ! heart +relationship: develops_from UBERON:0006283 ! future cardiac ventricle +relationship: immediate_transformation_of UBERON:0006283 {source="Bgee:AN"} ! future cardiac ventricle + +[Term] +id: UBERON:0002083 +name: ductus venosus +def: "The vascular channel in the fetus passing through the liver and joining the umbilical vein with the inferior vena cava." [VHOG:0000924] +subset: pheno_slim +subset: uberon_slim +xref: Ductus:venosus +xref: EHDAA2:0000422 +xref: EHDAA:5402 +xref: EMAPA:17343 +xref: FMA:71007 +xref: http://linkedlifedata.com/resource/umls/id/C1288338 +xref: http://www.snomedbrowser.com/Codes/Details/304829005 +xref: MA:0002111 +xref: NCIT:C34143 +xref: UMLS:C1288338 {source="ncithesaurus:Ductus_Venosus"} +xref: VHOG:0000924 +is_a: UBERON:0001638 {source="EHDAA2"} ! vein +relationship: branching_part_of UBERON:0005459 {source="cjm"} ! left umbilical vein +relationship: develops_from UBERON:0005459 {source="EHDAA2"} ! left umbilical vein +relationship: part_of UBERON:0005459 ! left umbilical vein +relationship: part_of UBERON:0011695 ! embryonic cardiovascular system + +[Term] +id: UBERON:0002084 +name: heart left ventricle +def: "A cardiac ventricle that is in the left side of the heart." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "cardiac left ventricle" EXACT [] +synonym: "left cardiac ventricle" EXACT [] +synonym: "left ventricle" EXACT [FMA:7101] +synonym: "left ventricle of heart" EXACT [] +synonym: "ventriculus sinister cordis" RELATED LATIN [http://en.wikipedia.org/wiki/Left_ventricle] +xref: BTO:0001629 +xref: CALOHA:TS-0439 +xref: EHDAA2:0002178 +xref: EMAPA:17337 +xref: FMA:7101 +xref: galen:LeftVentricle +xref: http://linkedlifedata.com/resource/umls/id/C0225897 +xref: http://www.snomedbrowser.com/Codes/Details/244385005 +xref: Left:ventricle +xref: MA:0000092 +xref: NCIT:C12871 +xref: OpenCyc:Mx4rtW8v46gEEdudWQACs5b6Bw +xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvVjj1pwpEbGdrcN5Y29ycA +xref: UMLS:C0225897 {source="ncithesaurus:Left_Ventricle"} +xref: VHOG:0000718 +is_a: UBERON:0002082 ! cardiac ventricle +is_a: UBERON:0035553 ! left cardiac chamber +intersection_of: UBERON:0002082 ! cardiac ventricle +intersection_of: in_left_side_of UBERON:0000948 ! heart +relationship: continuous_with UBERON:0000947 ! aorta +relationship: develops_from UBERON:0004140 {source="GO"} ! primary heart field + +[Term] +id: UBERON:0002085 +name: interatrial septum +def: "A cardiac septum that divides the left and right atria of the heart." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "atrial septum" EXACT [] +synonym: "atrium septum" EXACT [] +synonym: "interatrial septal wall" EXACT [] +xref: EHDAA2:0000838 +xref: EHDAA:1896 +xref: EMAPA:17011 +xref: FMA:7108 +xref: galen:InteratrialSeptum +xref: http://linkedlifedata.com/resource/umls/id/C0225836 +xref: http://www.snomedbrowser.com/Codes/Details/362016003 +xref: Interatrial:septum +xref: MA:0000084 +xref: NCIT:C32818 +xref: OpenCyc:Mx4rpd49nLYEEduAAAACs2IKfQ +xref: OpenCyc:Mx4rwGvku5wpEbGdrcN5Y29ycA +xref: UMLS:C0225836 {source="ncithesaurus:Interatrial_Septum"} +xref: VHOG:0000385 +is_a: UBERON:0002099 ! cardiac septum +intersection_of: UBERON:0002099 ! cardiac septum +intersection_of: adjacent_to UBERON:0002078 ! right cardiac atrium +intersection_of: adjacent_to UBERON:0002079 ! left cardiac atrium +relationship: adjacent_to UBERON:0002078 ! right cardiac atrium +relationship: adjacent_to UBERON:0002079 ! left cardiac atrium + +[Term] +id: UBERON:0002086 +name: sinoatrial valve +def: "A valve at the opening of the sinus venosus into the primordial atrium[TFD,modified]" [http://medical-dictionary.thefreedictionary.com/sinoatrial+valve] +subset: pheno_slim +subset: vertebrate_core +synonym: "sinoatrial valves" RELATED PLURAL [ZFA:0000680] +synonym: "sinuatrial valve" EXACT [MP:0011646] +xref: FMA:71120 +xref: TAO:0000680 +xref: ZFA:0000680 +is_a: UBERON:0000946 ! cardial valve +is_a: UBERON:0002050 ! embryonic structure +relationship: connects UBERON:0002063 {source="ZFA-modified"} ! sinus venosus +relationship: connects UBERON:0002081 {source="ZFA-modified"} ! cardiac atrium + +[Term] +id: UBERON:0002087 +name: atrioventricular canal +def: "The part of the heart connecting the atrium to the cardiac ventricle[ZFA]. In the developing heart, the constriction between the atrium and ventricle constitutes the atrial canal, and indicates the site of the future atrioventricular valves[WP]." [http://en.wikipedia.org/wiki/Atrioventricular_canal, https://github.com/obophenotype/uberon/issues/38, ZFA:0001315] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "atrial canal" EXACT [http://en.wikipedia.org/wiki/Atrial_canal] +synonym: "atrio-ventricular canal" EXACT [EHDAA2:0000152] +synonym: "AV canal" EXACT [] +synonym: "AVC" EXACT ABBREVIATION [ZFA:0001315] +synonym: "canalis atrioventricularis" RELATED LATIN [http://en.wikipedia.org/wiki/Atrioventricular_canal] +synonym: "ependymal canal" RELATED [EMAPA:16546] +xref: Atrioventricular:canal +xref: EHDAA:764 +xref: EMAPA:16546 +xref: FMA:71121 +xref: http://www.snomedbrowser.com/Codes/Details/341079007 +xref: TAO:0001315 +xref: VHOG:0001473 +xref: XAO:0004123 +xref: ZFA:0001315 +is_a: UBERON:0002050 ! embryonic structure +relationship: connects UBERON:0002081 ! cardiac atrium +relationship: connects UBERON:0002082 ! cardiac ventricle +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +property_value: dc-contributor https://github.com/rfoulger +relationship: develops_from UBERON:0007279 ! presumptive atrioventricular canal +relationship: immediate_transformation_of UBERON:0007279 {source="Bgee:AN"} ! presumptive atrioventricular canal +relationship: part_of UBERON:0011820 {source="EHDAA2"} ! atrioventricular region + +[Term] +id: UBERON:0002088 +name: lateral thoracic vein +def: "The lateral thoracic vein is a tributary of the axillary vein. It runs with the lateral thoracic artery and drains the serratus ventralis muscle and the Pectoralis major muscle. Normally, the thoracoepigastric vein exists between this vein and superficial epigastric vein (a tributary of femoral vein), to act as a shunt for blood if the portal system (through the liver) develops hypertension or a blockage. [WP,unvetted]." [http://en.wikipedia.org/wiki/Lateral_thoracic_vein] +subset: uberon_slim +synonym: "vena thoracica lateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_thoracic_vein] +xref: EMAPA:37163 {source="MA:th"} +xref: FMA:71210 +xref: http://en.wikipedia.org/wiki/Lateral_thoracic_vein +xref: http://www.snomedbrowser.com/Codes/Details/53595001 +xref: MA:0002162 +is_a: UBERON:0005194 ! thoracic vein +relationship: part_of UBERON:0000985 ! axillary vein +relationship: part_of UBERON:0001587 ! subclavian vein +relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein +relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein + +[Term] +id: UBERON:0002089 +name: thoracodorsal vein +def: "companion vein of the thoracodorsal artery, draining the apical part of the latissimus dorsi and merging with the circumflex scapular vein to form a subscapular vein" [http://www.medilexicon.com/medicaldictionary.php?t=97559] +xref: EMAPA:37198 {source="MA:th"} +xref: FMA:71213 +xref: MA:0002238 +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0001112 ! latissimus dorsi muscle +relationship: drains UBERON:0001112 ! latissimus dorsi muscle +relationship: part_of UBERON:0000985 ! axillary vein +relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein + +[Term] +id: UBERON:0002090 +name: postcranial axial skeleton +def: "The postcranial subdivision of skeleton structural components forming the long axis of the vertebrate body; in Danio, consisting of the notochord, vertebrae, ribs, supraneurals, intermuscular bones, and unpaired median fins; in human consists of the bones of the vertebral column, the thoracic cage and the pelvis[ZFA+FMA]." [https://sourceforge.net/tracker/?func=detail&aid=2983975&group_id=76834&atid=974957, https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=2983977&group_id=76834, ZFA:0000317] +comment: previous some AOs had used the term 'axial skeleton' to include the skull. This is being resolved (see tracker items above). Status: MA - fixed. +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "axial skeleton" BROAD [FMA:71221, https://github.com/obophenotype/uberon/wiki/The-axial-skeleton] +synonym: "post-cranial axial skeleton" EXACT [] +xref: AAO:0000034 +xref: EFO:0000942 +xref: EHDAA2:0000161 +xref: EHDAA:5049 +xref: EMAPA:17214 +xref: EMAPA:37721 {source="MA:th"} +xref: FMA:71221 +xref: MA:0002986 +xref: MAT:0000148 +xref: MIAA:0000148 +xref: TAO:0000317 +xref: VHOG:0000317 +xref: VSAO:0000093 +xref: XAO:0003073 +xref: ZFA:0000317 +is_a: UBERON:0010912 ! subdivision of skeleton +relationship: develops_from UBERON:0003089 ! sclerotome +relationship: part_of UBERON:0005944 ! axial skeleton plus cranial skeleton +relationship: part_of UBERON:0011138 ! postcranial axial skeletal system + +[Term] +id: UBERON:0002091 +name: appendicular skeleton +def: "Subdivision of skeleton which which consists of all the skeletal elements in in the pectoral and pelvic appendage complexes[cjm]." [http://en.wikipedia.org/wiki/Appendicular_skeleton, https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "appendicular skeleton" EXACT [] +synonym: "entire appendicular skeleton" EXACT [https://github.com/obophenotype/uberon/issues/59] +synonym: "paired fin skeleton" NARROW SENSU [] +synonym: "skeleton appendiculare" RELATED LATIN [http://en.wikipedia.org/wiki/Appendicular_skeleton] +xref: AAO:0000747 +xref: Appendicular:skeleton +xref: EFO:0000951 +xref: EMAPA:32729 +xref: FMA:71222 +xref: http://linkedlifedata.com/resource/umls/id/C0222646 +xref: http://www.snomedbrowser.com/Codes/Details/322050006 +xref: MA:0000290 +xref: MAT:0000278 +xref: MIAA:0000278 +xref: NCIT:C49477 +xref: UMLS:C0222646 {source="ncithesaurus:Appendicular_Skeleton"} +xref: VHOG:0001666 +xref: VSAO:0000076 +xref: XAO:0003166 +is_a: UBERON:0010912 ! subdivision of skeleton +relationship: contributes_to_morphology_of UBERON:0001434 ! skeletal system +relationship: part_of UBERON:0011249 ! appendicular skeletal system + +[Term] +id: UBERON:0002092 +name: brain dura mater +def: "The fibrous membrane forming the outer of the three coverings that surrounds the brain within the cranial cavity; consists of two layers including the periosteal layer and the meningeal layer." [MP:0009025] +subset: pheno_slim +synonym: "cranial dura mater" EXACT [FMA:71236] +synonym: "dura mater cranialis" EXACT LATIN [FMA:71236, FMA:TA] +synonym: "dura mater encephali" EXACT [] +synonym: "dura mater of brain" EXACT [] +xref: EMAPA:32668 +xref: EV:0100313 +xref: FMA:71236 +xref: http://linkedlifedata.com/resource/umls/id/C0459393 +xref: http://www.snomedbrowser.com/Codes/Details/309321003 +xref: MA:0000815 +xref: NCIT:C49332 +xref: UMLS:C0459393 {source="ncithesaurus:Cerebral_Dura_Mater"} +xref: VHOG:0000270 +is_a: UBERON:0002363 ! dura mater +is_a: UBERON:0003547 ! brain meninx +intersection_of: UBERON:0002363 ! dura mater +intersection_of: part_of UBERON:0000955 ! brain + +[Term] +id: UBERON:0002093 +name: spinal dura mater +def: "A dura mater that is part of a spinal cord [Automatically generated definition]." [OBOL:automatic] +subset: organ_slim +subset: pheno_slim +synonym: "dura mater of neuraxis of spinal cord" EXACT [OBOL:automatic] +synonym: "dura mater of spinal cord" EXACT [] +synonym: "spinal cord dura mater" EXACT [] +synonym: "spinal cord dura mater of neuraxis" EXACT [OBOL:automatic] +xref: EMAPA:17806 +xref: FMA:71237 +xref: http://linkedlifedata.com/resource/umls/id/C0228124 +xref: http://www.snomedbrowser.com/Codes/Details/362302001 +xref: MA:0001132 +xref: NCIT:C49799 +xref: UMLS:C0228124 {source="ncithesaurus:Spinal_Cord_Dura_Mater"} +xref: VHOG:0000411 +is_a: UBERON:0002363 ! dura mater +is_a: UBERON:0003292 ! meninx of spinal cord +intersection_of: UBERON:0002363 ! dura mater +intersection_of: part_of UBERON:0002240 ! spinal cord + +[Term] +id: UBERON:0002094 +name: interventricular septum +def: "Cardiac septum which separates the right ventricle from the left ventricle.[FMA]" [FMA:7133] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "heart interventricular septum" EXACT [MA:0000085] +synonym: "heart ventricular septum" EXACT [MA:0000085] +synonym: "interventricular septum of heart" RELATED [BTO:0002483] +synonym: "interventriculare cordis" RELATED [BTO:0002483] +synonym: "intraventricular septum" RELATED [http://en.wikipedia.org/wiki/Interventricular_septum] +synonym: "s. interventriculare cordis" RELATED LATIN [http://en.wikipedia.org/wiki/Interventricular_septum] +synonym: "septum inferius" RELATED [http://en.wikipedia.org/wiki/Interventricular_septum] +synonym: "septum membranaceum" RELATED [http://en.wikipedia.org/wiki/Interventricular_septum] +synonym: "ventricle septum" RELATED [] +synonym: "ventricular septum" RELATED [http://en.wikipedia.org/wiki/Interventricular_septum] +synonym: "ventricular septum" RELATED [MA:0000085] +xref: BTO:0002483 +xref: EFO:0001956 +xref: EHDAA:2603 +xref: EMAPA:17333 +xref: FMA:7133 +xref: galen:InterventricularSeptum +xref: http://linkedlifedata.com/resource/umls/id/C0225870 +xref: http://www.snomedbrowser.com/Codes/Details/362019005 +xref: Interventricular:septum +xref: MA:0000085 +xref: NCIT:C32874 +xref: OpenCyc:Mx4rwA7lp5wpEbGdrcN5Y29ycA +xref: UMLS:C0225870 {source="ncithesaurus:Interventricular_Septum"} +xref: VHOG:0000386 +is_a: UBERON:0002099 ! cardiac septum +intersection_of: UBERON:0002099 ! cardiac septum +intersection_of: adjacent_to UBERON:0002080 ! heart right ventricle +intersection_of: adjacent_to UBERON:0002084 ! heart left ventricle +relationship: adjacent_to UBERON:0002080 ! heart right ventricle +relationship: adjacent_to UBERON:0002084 ! heart left ventricle + +[Term] +id: UBERON:0002095 +name: mesentery +def: "Anatomical organ component composed of a double layer of serous membrane that suspends a viscus from the body wall or connects adjacent viscera and in doing so conveys blood vessels, lymphatics and nerves to and from the viscera. Examples: greater omentum, broad ligament of uterus, sigmoid mesocolon." [FMA:7144, http://en.wikipedia.org/wiki/Mesentery, http://en.wikipedia.org/wiki/Mesentery#Mesentery_.28general.29, https://github.com/obophenotype/uberon/issues/85] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "generic mesentery" EXACT [http://en.wikipedia.org/wiki/Mesentery] +synonym: "mesentery (generic)" EXACT [http://en.wikipedia.org/wiki/Mesentery] +xref: AAO:0011061 +xref: BTO:0001380 +xref: EV:0100083 +xref: FMA:7144 +xref: GAID:21 +xref: galen:Mesentery +xref: http://linkedlifedata.com/resource/umls/id/C0025474 +xref: http://www.snomedbrowser.com/Codes/Details/362707009 +xref: Mesentery_.28general.29 +xref: MESH:A01.047.025.600.451 +xref: NCIT:C33103 +xref: UMLS:C0025474 {source="ncithesaurus:Mesentery"} +is_a: UBERON:0000042 ! serous membrane +property_value: dc-contributor https://github.com/cmungall + +[Term] +id: UBERON:0002097 +name: skin of body +def: "The organ covering the body that consists of the dermis and epidermis." [UBERON:cjm] +subset: efo_slim +subset: major_organ +subset: pheno_slim +subset: uberon_slim +synonym: "entire integument" RELATED [] +synonym: "entire skin" EXACT [] +synonym: "integument" RELATED [] +synonym: "integumental organ" RELATED [] +synonym: "pelt" RELATED [] +synonym: "skin" RELATED [] +synonym: "skin organ" EXACT [] +xref: BTO:0001253 +xref: CALOHA:TS-0934 +xref: EFO:0000962 +xref: EHDAA2:0001844 +xref: EMAPA:17525 +xref: FMA:7163 +xref: galen:Skin +xref: http://en.wikipedia.org/wiki/Skin +xref: http://linkedlifedata.com/resource/umls/id/C1123023 +xref: http://www.snomedbrowser.com/Codes/Details/181469002 +xref: MESH:D012867 +xref: MFMO:0000099 +xref: NCIT:C12470 +xref: OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA +xref: UMLS:C1123023 {source="ncithesaurus:Skin"} +xref: XAO:0000023 +is_a: UBERON:0000062 ! organ +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: composed_primarily_of UBERON:0000014 ! zone of skin +relationship: develops_from UBERON:0011272 {source="Wikipathways:WP2062"} ! embryonic skin basal layer +relationship: part_of UBERON:0002199 ! integument + +[Term] +id: UBERON:0002098 +name: apex of heart +def: "The apex of the heart is the lowest superficial part of the heart. It is directed downward, forward, and to the left, and is overlapped by the left lung and pleura. [WP,unvetted]." [http://en.wikipedia.org/wiki/Apex_of_the_heart] +subset: pheno_slim +subset: uberon_slim +synonym: "apex cordis" EXACT LATIN [] +synonym: "cardiac apex" EXACT [FMA:7164] +synonym: "heart apex" EXACT [] +xref: FMA:7164 +xref: http://en.wikipedia.org/wiki/Apex_of_the_heart +xref: http://linkedlifedata.com/resource/umls/id/C0225811 +xref: http://www.snomedbrowser.com/Codes/Details/362009004 +xref: MA:0000488 +xref: NCIT:C32126 +xref: UMLS:C0225811 {source="ncithesaurus:Apex_of_the_Heart"} +is_a: UBERON:0006983 {source="FMA"} ! anatomical point +relationship: part_of UBERON:0000948 ! heart + +[Term] +id: UBERON:0002099 +name: cardiac septum +def: "The thin membranous structure between the two heart atria or the thick muscular structure between the two heart ventricles." [MESH:A07.541.459] +subset: pheno_slim +subset: uberon_slim +synonym: "cardiac septa" EXACT PLURAL [] +synonym: "heart septa" EXACT PLURAL [] +synonym: "heart septum" EXACT [] +synonym: "septum of heart" EXACT [] +synonym: "spiral septa" RELATED PLURAL [XAO:0004141] +xref: EMAPA:35400 +xref: FMA:7180 +xref: GAID:562 +xref: http://linkedlifedata.com/resource/umls/id/C0018819 +xref: http://www.snomedbrowser.com/Codes/Details/362014000 +xref: MA:0000083 +xref: MESH:D006346 +xref: NCIT:C49485 +xref: UMLS:C0018819 {source="ncithesaurus:Heart_Septum"} +xref: XAO:0004141 +is_a: UBERON:0003037 ! septum +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0003037 ! septum +intersection_of: part_of UBERON:0000948 ! heart +relationship: adjacent_to UBERON:0004151 ! cardiac chamber +relationship: contributes_to_morphology_of UBERON:0000948 ! heart +relationship: part_of UBERON:0000948 ! heart + +[Term] +id: UBERON:0002100 +name: trunk +def: "Organism subdivision which is the part of the body posterior to the cervical region (or head, when cervical region not present) and anterior to the caudal region. Includes the sacrum when present." [http://en.wikipedia.org/wiki/Torso, TAO:0001115, UBERONREF:0000006] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "Rumpf" RELATED [BTO:0001493] +synonym: "thoracolumbar region" EXACT [] +synonym: "torso" EXACT [] +synonym: "trunk region" EXACT [XAO:0000054] +xref: AAO:0010339 +xref: BILA:0000116 +xref: BTO:0001493 +xref: CALOHA:TS-1071 +xref: EFO:0000966 +xref: EMAPA:31857 +xref: FMA:7181 +xref: galen:Trunk +xref: http://en.wikipedia.org/wiki/Torso +xref: http://linkedlifedata.com/resource/umls/id/C0460005 +xref: http://www.snomedbrowser.com/Codes/Details/262225004 +xref: MA:0000004 +xref: MAT:0000296 +xref: MIAA:0000296 +xref: NCIT:C33816 +xref: OpenCyc:Mx4rvVkJjpwpEbGdrcN5Y29ycA +xref: TAO:0001115 +xref: UMLS:C0460005 {source="ncithesaurus:Trunk"} +xref: XAO:0000054 +xref: XAO:0003025 +xref: ZFA:0001115 +is_a: UBERON:0011676 ! subdivision of organism along main body axis +disjoint_from: UBERON:0002464 ! nerve trunk +disjoint_from: UBERON:0014479 ! elephant trunk +relationship: part_of UBERON:0013702 ! body proper + +[Term] +id: UBERON:0002101 +name: limb +def: "A paired appendage that is evolved from a paired fin. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the girdle and its parts." [UBERONREF:0000003] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "extremities" RELATED PLURAL [] +synonym: "extremity" RELATED [] +synonym: "flipper" NARROW SENSU [] +synonym: "free limb" EXACT [FMA:24875] +synonym: "limb sensu Vertebrata" EXACT [MAT:0000090] +synonym: "pentadactyl limb" EXACT [] +synonym: "tetrapod limb" EXACT [] +xref: AAO:0010336 +xref: AEO:0000172 +xref: CALOHA:TS-0552 +xref: EFO:0000876 +xref: EHDAA2:0003172 +xref: EHDAA:1697 +xref: EHDAA:8273 +xref: EMAPA:16405 +xref: FMA:24875 +xref: GAID:36 +xref: galen:Extremity +xref: http://en.wikipedia.org/wiki/Limb +xref: http://linkedlifedata.com/resource/umls/id/C0015385 +xref: http://www.snomedbrowser.com/Codes/Details/243996003 +xref: MA:0000007 +xref: MAT:0000090 +xref: MIAA:0000090 +xref: NCIT:C12429 +xref: OpenCyc:Mx4rvn1uSZwpEbGdrcN5Y29ycA +xref: UMLS:C0015385 {source="ncithesaurus:Limb"} +xref: VHOG:0000336 +xref: VSAO:0000121 +xref: XAO:0003027 +is_a: UBERON:0004708 {specialization_within="Sarcopterygians"} ! paired limb/fin +intersection_of: UBERON:0000475 ! organism subdivision +intersection_of: has_skeleton UBERON:0004381 ! skeleton of limb +relationship: develops_from UBERON:0004347 ! limb bud +relationship: existence_ends_during UBERON:0000066 ! fully formed stage +relationship: has_skeleton UBERON:0004381 ! skeleton of limb + +[Term] +id: UBERON:0002102 +name: forelimb +def: "A (free) limb that is connected to a pectoral girdle. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the pectoral girdle and its parts." [UBERONREF:0000003] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "anteriormost limb" EXACT [] +synonym: "fore limb" EXACT [] +synonym: "foreleg" RELATED [] +synonym: "forelimb" EXACT [] +synonym: "free part of upper limb" EXACT [FMA:24878] +synonym: "free upper limb" EXACT [FMA:24878, UBERONREF:0000003] +synonym: "membrum superius" EXACT LATIN [FMA:7183, FMA:TA] +synonym: "pectoral flipper" NARROW SENSU [] +synonym: "pectoral limb" EXACT [] +synonym: "superior member" EXACT [] +synonym: "upper extremity" EXACT [] +synonym: "upper limb" EXACT [] +xref: AAO:0000205 +xref: BTO:0001729 +xref: CALOHA:TS-2214 +xref: EFO:0000882 +xref: EHDAA2:0002133 +xref: EHDAA:6208 +xref: EMAPA:17412 +xref: EV:0100014 +xref: FMA:24878 +xref: GAID:1215 +xref: GAID:51 +xref: galen:UpperExtremity +xref: http://en.wikipedia.org/wiki/Forelimb +xref: http://linkedlifedata.com/resource/umls/id/C1140618 +xref: http://www.snomedbrowser.com/Codes/Details/182245002 +xref: MA:0000025 +xref: MAT:0000394 +xref: MESH:D005552 +xref: MIAA:0000394 +xref: NCIT:C12671 +xref: UMLS:C1140618 {source="ncithesaurus:Upper_Extremity"} +xref: VHOG:0000338 +xref: VSAO:0000148 +xref: XAO:0003030 +is_a: UBERON:0002101 ! limb +is_a: UBERON:0004710 ! pectoral appendage +intersection_of: UBERON:0002101 ! limb +intersection_of: part_of UBERON:0010708 ! pectoral complex +relationship: anterior_to UBERON:0002103 ! hindlimb +relationship: develops_from UBERON:0005417 ! forelimb bud +relationship: has_skeleton UBERON:0001440 ! forelimb skeleton +relationship: part_of UBERON:0000153 ! anterior region of body + +[Term] +id: UBERON:0002103 +name: hindlimb +def: "A (free) limb that is connected to a pelvic girdle region. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the pelvic girdle and its parts." [http://en.wikipedia.org/wiki/Hindlimb, http://en.wikipedia.org/wiki/Lower_limb, UBERONREF:0000003] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "free lower limb" EXACT [FMA:24879, UBERONREF:0000003] +synonym: "free part of lower limb" RELATED [FMA:24879] +synonym: "hind limb" EXACT [] +synonym: "hind-limb" EXACT [VSAO:0000150] +synonym: "hindlimb" EXACT [] +synonym: "inferior member" EXACT [] +synonym: "lower extremity" RELATED [] +synonym: "lower limb" EXACT [] +synonym: "membrum inferius" EXACT LATIN [FMA:7184, FMA:TA] +synonym: "membrum inferius" RELATED LATIN [http://en.wikipedia.org/wiki/Lower_limb] +synonym: "pelvic appendage" RELATED [] +xref: AAO:0000219 +xref: BTO:0002345 +xref: CALOHA:TS-2215 +xref: EFO:0000883 +xref: EHDAA2:0001033 +xref: EHDAA:6094 +xref: EMAPA:17458 +xref: EV:0100015 +xref: FMA:24879 +xref: GAID:1221 +xref: GAID:38 +xref: galen:LowerExtremity +xref: http://en.wikipedia.org/wiki/Hindlimb +xref: http://linkedlifedata.com/resource/umls/id/C0023216 +xref: http://linkedlifedata.com/resource/umls/id/C1522391 +xref: http://www.snomedbrowser.com/Codes/Details/182281004 +xref: MA:0000026 +xref: MAT:0000395 +xref: MESH:D006614 +xref: MIAA:0000395 +xref: NCIT:C12742 +xref: NCIT:C77625 +xref: UMLS:C0023216 {source="ncithesaurus:Lower_Extremity"} +xref: UMLS:C1522391 {source="ncithesaurus:Hind_Limb"} +xref: VHOG:0000337 +xref: VSAO:0000150 +xref: XAO:0003031 +is_a: UBERON:0002101 ! limb +is_a: UBERON:0004709 ! pelvic appendage +intersection_of: UBERON:0002101 ! limb +intersection_of: part_of UBERON:0010709 ! pelvic complex +relationship: develops_from UBERON:0005418 ! hindlimb bud +relationship: has_skeleton UBERON:0001441 ! hindlimb skeleton +relationship: part_of UBERON:0000154 ! posterior region of body + +[Term] +id: UBERON:0002104 +name: visual system +alt_id: UBERON:0007036 +def: "The sensory system subserving the sense of vision." [NIFSTD:FMAID_7191] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "photosensory system" EXACT [BILA:0000140] +synonym: "visual organ system" EXACT [] +xref: AAO:0000632 +xref: BILA:0000140 +xref: EMAPA:36003 +xref: FMA:7191 +xref: FMAID:7191 +xref: http://linkedlifedata.com/resource/umls/id/C0587900 +xref: http://www.snomedbrowser.com/Codes/Details/281831001 +xref: MA:0002444 +xref: NCIT:C12888 +xref: OpenCyc:Mx4rvViCtpwpEbGdrcN5Y29ycA +xref: TAO:0001127 +xref: UMLS:C0587900 {source="ncithesaurus:Visual_System"} +xref: Visual:system +xref: XAO:0003198 +xref: ZFA:0001127 +is_a: UBERON:0001032 ! sensory system + +[Term] +id: UBERON:0002105 +name: vestibulo-auditory system +def: "Sensory system responsible for the perception of spatial orientation and auditory stimuli." [ZFA:0001138] +subset: functional_classification +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "auditory organ system" EXACT [] +synonym: "auditory system" RELATED [] +synonym: "auditory/vestibular system" RELATED [] +synonym: "vestibuloauditory system" EXACT [] +synonym: "vestibuloauditory system" RELATED [] +xref: AAO:0000631 +xref: EMAPA:36002 +xref: EMAPA:37985 {source="MA:th"} +xref: FMA:78500 +xref: TAO:0001138 +xref: XAO:0003195 +xref: ZFA:0001138 +is_a: UBERON:0001032 ! sensory system + +[Term] +id: UBERON:0002106 +name: spleen +def: "the organ that functions to filter blood and to store red corpuscles and platelets" [ISBN:0-683-40008-8, MP:0000689] +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "lien" RELATED LATIN [http://en.wikipedia.org/wiki/Spleen] +xref: AAO:0010395 +xref: BTO:0001281 +xref: CALOHA:TS-0956 +xref: EFO:0000869 +xref: EMAPA:18767 +xref: EV:0100055 +xref: FMA:7196 +xref: GAID:1289 +xref: galen:Spleen +xref: http://en.wikipedia.org/wiki/Spleen +xref: http://linkedlifedata.com/resource/umls/id/C0037993 +xref: http://www.snomedbrowser.com/Codes/Details/181279003 +xref: MA:0000141 +xref: MAT:0000085 +xref: MESH:A15.382.520.604.713 +xref: MIAA:0000085 +xref: NCIT:C12432 +xref: OpenCyc:Mx4rvVjgw5wpEbGdrcN5Y29ycA +xref: TAO:0000436 +xref: UMLS:C0037993 {source="ncithesaurus:Spleen"} +xref: VHOG:0000120 +xref: XAO:0000328 +xref: ZFA:0000436 +is_a: UBERON:0004177 ! hemopoietic organ +is_a: UBERON:0005057 ! immune organ +is_a: UBERON:0013765 ! digestive system element +is_a: UBERON:0017672 ! abdominal viscera +disjoint_from: UBERON:0015708 ! splenium of the corpus callosum +relationship: develops_from UBERON:0006293 ! spleen primordium + +[Term] +id: UBERON:0002107 +name: liver +def: "An exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes[GO]." [BTO:0000759, http://en.wikipedia.org/wiki/Liver] +subset: efo_slim +subset: major_organ +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "iecur" RELATED LATIN [http://en.wikipedia.org/wiki/Liver] +synonym: "jecur" RELATED LATIN [http://en.wikipedia.org/wiki/Liver] +xref: AAO:0010111 +xref: BTO:0000759 +xref: CALOHA:TS-0564 +xref: EFO:0000887 +xref: EHDAA2:0000997 +xref: EHDAA:2197 +xref: EMAPA:16846 +xref: EV:0100089 +xref: FMA:7197 +xref: GAID:288 +xref: galen:Liver +xref: http://en.wikipedia.org/wiki/Liver +xref: http://linkedlifedata.com/resource/umls/id/C0023884 +xref: http://www.snomedbrowser.com/Codes/Details/181268008 +xref: MA:0000358 +xref: MAT:0000097 +xref: MESH:D008099 +xref: MIAA:0000097 +xref: NCIT:C12392 +xref: OpenCyc:Mx4rvVimppwpEbGdrcN5Y29ycA +xref: TAO:0000123 +xref: UMLS:C0023884 {source="ncithesaurus:Liver"} +xref: VHOG:0000257 +xref: XAO:0000133 +xref: ZFA:0000123 +is_a: UBERON:0002365 {source="BTO", source="EHDAA2", source="GO-def"} ! exocrine gland +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0005172 ! abdomen element +is_a: UBERON:0006925 ! digestive system gland +disjoint_from: UBERON:0010264 ! hepatopancreas +relationship: contributes_to_morphology_of UBERON:0002423 ! hepatobiliary system +relationship: develops_from UBERON:0004161 {source="EHDAA2"} ! septum transversum +relationship: develops_from UBERON:0008836 {source="http://www.stembook.org/node/512"} ! liver bud +relationship: has_part UBERON:0004647 ! liver lobule +relationship: part_of UBERON:0002423 {source="ZFA"} ! hepatobiliary system +relationship: produces UBERON:0001970 ! bile + +[Term] +id: UBERON:0002108 +name: small intestine +def: "Subdivision of digestive tract that connects the stomach to the large intestine and is where much of the digestion and absorption of food takes place (with the exception of ruminants). The mammalian small intestine is long and coiled and can be differentiated histologically into: duodenum, jejunem, ileum[WP,cjm,Kardong]." [http://en.wikipedia.org/wiki/Small_intestine, ISBN:0073040584] +subset: efo_slim +subset: major_organ +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "anterior intestine" RELATED [] +synonym: "intestinum tenue" RELATED LATIN [http://en.wikipedia.org/wiki/Small_intestine] +synonym: "intestinum tenue" RELATED [BTO:0000651] +synonym: "mid intestine" RELATED [] +synonym: "small bowel" EXACT [] +synonym: "small intestine" EXACT [] +xref: AAO:0010397 +xref: BTO:0000651 +xref: CALOHA:TS-0942 +xref: EFO:0000841 +xref: EMAPA:32834 +xref: EV:0100072 +xref: FMA:7200 +xref: GAID:313 +xref: galen:SmallIntestine +xref: http://linkedlifedata.com/resource/umls/id/C0021852 +xref: http://www.snomedbrowser.com/Codes/Details/181250005 +xref: MA:0000337 +xref: MAT:0000047 +xref: MESH:A03.492.411.620 +xref: MIAA:0000047 +xref: NCIT:C12386 +xref: OpenCyc:Mx4rvVjlIJwpEbGdrcN5Y29ycA +xref: Small:intestine +xref: TAO:0001323 +xref: UMLS:C0021852 {source="ncithesaurus:Small_Intestine"} +xref: VHOG:0000055 +xref: XAO:0000130 +xref: ZFA:0001323 +is_a: UBERON:0004921 {order="2", source="cjm"} ! subdivision of digestive tract +is_a: UBERON:0013765 ! digestive system element +relationship: contributes_to_morphology_of UBERON:0000160 ! intestine +relationship: part_of UBERON:0000160 ! intestine + +[Term] +id: UBERON:0002109 +name: pair of nares +def: "Pair of nostrils." [http://en.wikipedia.org/wiki/Nares] +subset: uberon_slim +synonym: "nares" RELATED [] +synonym: "nares set" EXACT [] +synonym: "nostrils" EXACT [] +synonym: "pair of nostrils" EXACT [] +synonym: "set of nares" RELATED [FMA:72005] +xref: FMA:72005 +xref: http://en.wikipedia.org/wiki/Nares +xref: OpenCyc:Mx4rvViCLpwpEbGdrcN5Y29ycA +is_a: UBERON:0034925 ! anatomical collection +intersection_of: UBERON:0034925 ! anatomical collection +intersection_of: has_member UBERON:0000003 {minCardinality="2", maxCardinality="2"} ! naris +relationship: has_member UBERON:0000003 ! naris +relationship: has_part UBERON:0000003 ! naris +relationship: part_of UBERON:0000004 ! nose + +[Term] +id: UBERON:0002110 +name: gall bladder +def: "An organ that aids digestion and stores bile produced by the liver[WP]." [http://en.wikipedia.org/wiki/Gallbladder] +comment: Rats do not have a gallbladder, but produce bile. The bile flows directly from the liver through the (hepatic) bile duct into the small intestine (Hebel and Stromberg, 1988) +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "gall bladder" EXACT [] +synonym: "gallbladder" EXACT [FMA:7202] +synonym: "vesica biliaris" RELATED LATIN [http://en.wikipedia.org/wiki/Gallbladder] +synonym: "vesica fellea" RELATED LATIN [http://en.wikipedia.org/wiki/Gallbladder] +xref: AAO:0010114 +xref: BTO:0000493 +xref: CALOHA:TS-0394 +xref: EFO:0000853 +xref: EHDAA2:0000699 +xref: EHDAA:8062 +xref: EMAPA:17202 +xref: EV:0100090 +xref: FMA:7202 +xref: galen:Gallbladder +xref: http://en.wikipedia.org/wiki/Gallbladder +xref: http://linkedlifedata.com/resource/umls/id/C0016976 +xref: http://www.snomedbrowser.com/Codes/Details/181269000 +xref: MA:0000356 +xref: MAT:0000072 +xref: MESH:D005704 +xref: MIAA:0000072 +xref: NCIT:C12377 +xref: OpenCyc:Mx4rvVkGr5wpEbGdrcN5Y29ycA +xref: TAO:0000208 +xref: UMLS:C0016976 {source="ncithesaurus:Gallbladder"} +xref: VHOG:0000221 +xref: XAO:0000135 +xref: ZFA:0000208 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0013765 ! digestive system element +is_a: UBERON:0017672 ! abdominal viscera +is_a: UBERON:0018707 {source="BTO"} ! bladder organ +relationship: contributes_to_morphology_of UBERON:0001173 ! biliary tree +relationship: develops_from UBERON:0004912 ! biliary bud +relationship: develops_from UBERON:0006242 {evidence="definitional"} ! gall bladder primordium +relationship: part_of UBERON:0002423 {source="MA", source="ZFA", source="cjm"} ! hepatobiliary system + +[Term] +id: UBERON:0002111 +name: artery smooth muscle tissue +def: "A portion of smooth muscle tissue that is part of an artery [Automatically generated definition]." [OBOL:automatic] +synonym: "arterial smooth muscle" EXACT [BTO:0000087] +synonym: "arterial smooth muscle cell" RELATED [BTO:0000087] +synonym: "artery smooth muscle" EXACT [] +synonym: "artery smooth muscle tissue" EXACT [] +synonym: "smooth muscle of artery" EXACT [FMA:72024] +xref: BTO:0000087 +xref: CALOHA:TS-1198 +xref: EMAPA:36285 +xref: FMA:72024 +xref: http://linkedlifedata.com/resource/umls/id/C1706851 +xref: MA:0000708 +xref: NCIT:C49195 +xref: UMLS:C1706851 {source="ncithesaurus:Artery_Smooth_Muscle_Tissue"} +is_a: UBERON:0004237 ! blood vessel smooth muscle +is_a: UBERON:0004695 ! arterial system smooth muscle +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0001637 ! artery +relationship: part_of UBERON:0001637 ! artery + +[Term] +id: UBERON:0002112 +name: smooth muscle of esophagus +def: "A portion of smooth muscle tissue that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "esophageal smooth muscle" EXACT [] +synonym: "esophagus involuntary muscle" EXACT [OBOL:automatic] +synonym: "esophagus non-striated muscle" EXACT [OBOL:automatic] +synonym: "esophagus smooth muscle" EXACT [] +synonym: "esophagus smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "gullet involuntary muscle" EXACT [OBOL:automatic] +synonym: "gullet non-striated muscle" EXACT [OBOL:automatic] +synonym: "gullet smooth muscle" EXACT [OBOL:automatic] +synonym: "gullet smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "involuntary muscle of esophagus" EXACT [OBOL:automatic] +synonym: "involuntary muscle of gullet" EXACT [OBOL:automatic] +synonym: "involuntary muscle of oesophagus" EXACT [OBOL:automatic] +synonym: "non-striated muscle of esophagus" EXACT [OBOL:automatic] +synonym: "non-striated muscle of gullet" EXACT [OBOL:automatic] +synonym: "non-striated muscle of oesophagus" EXACT [OBOL:automatic] +synonym: "oesophagus involuntary muscle" EXACT [OBOL:automatic] +synonym: "oesophagus non-striated muscle" EXACT [OBOL:automatic] +synonym: "oesophagus smooth muscle" RELATED [] +synonym: "oesophagus smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "smooth muscle of gullet" EXACT [OBOL:automatic] +synonym: "smooth muscle of oesophagus" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of esophagus" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of gullet" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of oesophagus" EXACT [OBOL:automatic] +xref: EMAPA:35323 +xref: FMA:72025 +xref: MA:0001573 +is_a: UBERON:0001135 ! smooth muscle tissue +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0001043 ! esophagus +relationship: contributes_to_morphology_of UBERON:0001043 ! esophagus +relationship: part_of UBERON:0003832 ! esophagus muscle + +[Term] +id: UBERON:0002113 +name: kidney +def: "A paired organ of the urinary tract which has the production of urine as its primary function." [http://anatomy.uams.edu/anatomyhtml/kidney.html, http://en.wikipedia.org/wiki/Kidney] +subset: efo_slim +subset: major_organ +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "reniculate kidney" NARROW SENSU [http://en.wikipedia.org/wiki/Reniculate_kidney] +xref: AAO:0000250 +xref: BTO:0000671 +xref: CALOHA:TS-0510 +xref: EFO:0000929 +xref: EMAPA:17373 +xref: EV:0100096 +xref: FMA:7203 +xref: GAID:423 +xref: galen:Kidney +xref: http://en.wikipedia.org/wiki/Kidney +xref: http://linkedlifedata.com/resource/umls/id/C0022646 +xref: http://www.snomedbrowser.com/Codes/Details/181414000 +xref: MA:0000368 +xref: MAT:0000119 +xref: MESH:D007668 +xref: MIAA:0000119 +xref: NCIT:C12415 +xref: OpenCyc:Mx4rvVjlYpwpEbGdrcN5Y29ycA +xref: UMLS:C0022646 {source="ncithesaurus:Kidney"} +xref: XAO:0003267 +is_a: UBERON:0000489 ! cavitated compound organ +is_a: UBERON:0005172 ! abdomen element +is_a: UBERON:0015212 ! lateral structure +relationship: contributes_to_morphology_of UBERON:0001008 ! renal system +relationship: develops_from UBERON:0003918 {evidence="definitional"} ! kidney mesenchyme +relationship: develops_from UBERON:0005095 ! kidney rudiment +relationship: fma_set_term FMA:264815 +relationship: in_lateral_side_of UBERON:0000468 ! multicellular organism +relationship: part_of UBERON:0011143 {source="FMA"} ! upper urinary tract + +[Term] +id: UBERON:0002114 +name: duodenum +def: "The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is inflected. The duodenum first goes anteriorly for a short distance, turns dorsally, and eventually caudally, thus it is a U-shaped structure with two horizontal sections (a ventral and a dorsal one)." [http://en.wikipedia.org/wiki/Duodenum, ISBN:0815318960] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "proximal intestine" RELATED [BTO:0000365] +synonym: "upper intestine" RELATED [BTO:0000365] +xref: AAO:0010402 +xref: BTO:0000365 +xref: CALOHA:TS-0214 +xref: EFO:0000851 +xref: EMAPA:18852 +xref: EV:0100073 +xref: FMA:7206 +xref: GAID:284 +xref: galen:Duodenum +xref: http://en.wikipedia.org/wiki/Duodenum +xref: http://linkedlifedata.com/resource/umls/id/C0013303 +xref: http://www.snomedbrowser.com/Codes/Details/181247007 +xref: MA:0000338 +xref: MAT:0000044 +xref: MESH:A03.492.411.620.270 +xref: MIAA:0000044 +xref: NCIT:C12263 +xref: OpenCyc:Mx4rv4LJDpwpEbGdrcN5Y29ycA +xref: UMLS:C0013303 {source="ncithesaurus:Duodenum"} +xref: VHOG:0000052 +xref: XAO:0000236 +is_a: UBERON:0004921 {order="3", source="cjm"} ! subdivision of digestive tract +relationship: continuous_with UBERON:0001166 ! pylorus +relationship: contributes_to_morphology_of UBERON:0002108 ! small intestine +relationship: part_of UBERON:0002108 ! small intestine +relationship: proximalmost_part_of UBERON:0002108 ! small intestine + +[Term] +id: UBERON:0002115 +name: jejunum +def: "the portion of the small intestine that extends from the duodenum to the ileum" [MGI:monikat, MP:0004002] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "intestinum jejunum" RELATED [BTO:0000657] +synonym: "mid-intestine" RELATED [http://en.wikipedia.org/wiki/Jejunum] +synonym: "middle intestine" RELATED [BTO:0000657] +xref: BTO:0000657 +xref: CALOHA:TS-0496 +xref: EFO:0001333 +xref: EMAPA:18666 +xref: EV:0100074 +xref: FMA:7207 +xref: GAID:318 +xref: galen:Jejunum +xref: http://en.wikipedia.org/wiki/Jejunum +xref: http://linkedlifedata.com/resource/umls/id/C0022378 +xref: http://www.snomedbrowser.com/Codes/Details/181248002 +xref: MA:0000340 +xref: MAT:0000045 +xref: MESH:A03.492.411.620.625 +xref: MIAA:0000045 +xref: NCIT:C12388 +xref: OpenCyc:Mx4rwATkPJwpEbGdrcN5Y29ycA +xref: UMLS:C0022378 {source="ncithesaurus:Jejunum"} +xref: VHOG:0000053 +is_a: UBERON:0004921 {order="3", source="cjm"} ! subdivision of digestive tract +relationship: contributes_to_morphology_of UBERON:0002108 ! small intestine +relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut +relationship: part_of UBERON:0002108 ! small intestine + +[Term] +id: UBERON:0002116 +name: ileum +def: "the portion of the small intestine that extends from the jejunum to the colon" [ISBN:0-683-40008-8, MGI:csmith, MP:0002581] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "distal intestine" RELATED [BTO:0000620] +synonym: "intestinum ileum" RELATED [BTO:0000620] +synonym: "lower intestine" RELATED [BTO:0000620] +synonym: "posterior intestine" RELATED [http://en.wikipedia.org/wiki/Ileum] +xref: AAO:0010403 +xref: BTO:0000620 +xref: CALOHA:TS-0472 +xref: EFO:0001334 +xref: EMAPA:32764 +xref: EV:0100075 +xref: FMA:7208 +xref: GAID:315 +xref: galen:Ileum +xref: http://en.wikipedia.org/wiki/Ileum +xref: http://linkedlifedata.com/resource/umls/id/C0020885 +xref: http://www.snomedbrowser.com/Codes/Details/181249005 +xref: MA:0000339 +xref: MAT:0000282 +xref: MESH:A03.492.411.620.484 +xref: MIAA:0000282 +xref: NCIT:C12387 +xref: OpenCyc:Mx4rvdcLHZwpEbGdrcN5Y29ycA +xref: UMLS:C0020885 {source="ncithesaurus:Ileum"} +xref: VHOG:0000647 +xref: XAO:0000237 +is_a: UBERON:0004921 {order="3", source="cjm"} ! subdivision of digestive tract +relationship: contributes_to_morphology_of UBERON:0002108 ! small intestine +relationship: part_of UBERON:0002108 ! small intestine + +[Term] +id: UBERON:0002118 +name: right ovary +def: "An ovary that is part of a right side of organism [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:37367 {source="MA:th"} +xref: FMA:7213 +xref: http://linkedlifedata.com/resource/umls/id/C0227873 +xref: http://www.snomedbrowser.com/Codes/Details/280123002 +xref: MA:0001705 +xref: NCIT:C33487 +xref: UMLS:C0227873 {source="ncithesaurus:Right_Ovary"} +is_a: UBERON:0000992 ! ovary +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0000992 ! ovary +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: in_right_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0002119 +name: left ovary +def: "An ovary that is part of a left side of organism [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:37366 {source="MA:th"} +xref: FMA:7214 +xref: http://linkedlifedata.com/resource/umls/id/C0227874 +xref: http://www.snomedbrowser.com/Codes/Details/280124008 +xref: MA:0001704 +xref: NCIT:C32969 +xref: UMLS:C0227874 {source="ncithesaurus:Left_Ovary"} +is_a: UBERON:0000992 ! ovary +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0000992 ! ovary +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0002120 +name: pronephros +alt_id: UBERON:0005794 +def: "In mammals, the pronephros is the first of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the pronephros is the fully functional embryonic kidney and is indispensible for larval life[GO]." [GO:0048793, http://en.wikipedia.org/wiki/Pronephros] +comment: Once the more complex mesonephros forms the pronephros undergoes apoptosis in amphibians. In fishes the nephron degenerates but the organ remains and becomes a component of the immune system[Wikipedia:Pronephros]. // TODO - check developmental relationships. Note that we previously include the ZFA/XAO terms under the more specific 'pronephric kidney', but these are now merged. TODO GCI: relationship: capable_of GO:0030104 +subset: efo_slim +subset: organ_slim +subset: uberon_slim +synonym: "archinephron" RELATED [BTO:0001541] +synonym: "embryonic kidney" RELATED [BTO:0001541] +synonym: "pronephric kidney" EXACT [XAO:0002000] +synonym: "pronephron" RELATED [BTO:0001541] +xref: AAO:0011089 +xref: BTO:0001541 +xref: EFO:0000927 +xref: EHDAA2:0001570 +xref: EHDAA:1017 +xref: EMAPA:16579 +xref: FMA:72170 +xref: http://en.wikipedia.org/wiki/Pronephros +xref: http://linkedlifedata.com/resource/umls/id/C0231048 +xref: http://www.snomedbrowser.com/Codes/Details/308804007 +xref: MAT:0000117 +xref: MIAA:0000117 +xref: NCIT:C34280 +xref: TAO:0000151 +xref: UMLS:C0231048 {source="ncithesaurus:Pronephros"} +xref: VHOG:0000037 +xref: XAO:0002000 +xref: ZFA:0000151 +is_a: UBERON:0002113 {source="GO"} ! kidney +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005423 ! developing anatomical structure +relationship: develops_from UBERON:0005721 {source="ZFA"} ! pronephric mesoderm +relationship: develops_from UBERON:0005754 ! rostral part of nephrogenic cord +relationship: located_in UBERON:0003887 {source="OG"} ! intraembryonic coelom + +[Term] +id: UBERON:0002122 +name: capsule of thymus +def: "The fibrous connective tissue surrounding the thymus." [MP:0002368] +subset: pheno_slim +synonym: "thymic capsule" EXACT [] +synonym: "thymus capsule" EXACT [] +xref: EMAPA:19306 +xref: FMA:72204 +xref: http://linkedlifedata.com/resource/umls/id/C0229945 +xref: http://www.snomedbrowser.com/Codes/Details/188181003 +xref: MA:0000766 +xref: NCIT:C33770 +xref: UMLS:C0229945 {source="ncithesaurus:Thymic_Capsule"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0003893 ! capsule +intersection_of: UBERON:0003893 ! capsule +intersection_of: bounding_layer_of UBERON:0002370 ! thymus +relationship: bounding_layer_of UBERON:0002370 ! thymus +relationship: part_of UBERON:0002370 ! thymus + +[Term] +id: UBERON:0002123 +name: cortex of thymus +def: "the outer part of a thymus lobule that surrounds the medulla and is composed of closely packed lymphocytes" [ISBN:0-683-40008-8, MP:0002371] +subset: pheno_slim +synonym: "thymic cortex" EXACT [BTO:0002934] +synonym: "thymus cortex" EXACT [MA:0000767] +xref: BTO:0002934 +xref: Cortex +xref: EMAPA:35863 +xref: FMA:72205 +xref: http://linkedlifedata.com/resource/umls/id/C0229948 +xref: http://www.snomedbrowser.com/Codes/Details/188262003 +xref: MA:0000767 +xref: NCIT:C33774 +xref: UMLS:C0229948 {source="ncithesaurus:Thymus_Cortex"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0001851 ! cortex +intersection_of: UBERON:0001851 ! cortex +intersection_of: part_of UBERON:0002370 ! thymus +relationship: part_of UBERON:0002370 ! thymus +relationship: present_in_taxon NCBITaxon:7955 {source="https://doi.org/10.1177/0192623311409597"} + +[Term] +id: UBERON:0002124 +name: medulla of thymus +def: "Medullary portion of thymus. The reticulum is coarser than in the cortex, the lymphoid cells are relatively fewer in number, and there are found peculiar nest-like bodies, the concentric corpuscles of Hassall. These concentric corpuscles are composed of a central mass, consisting of one or more granular cells, and of a capsule formed of epithelioid cells. They are the remains of the epithelial tubes, which grow out from the third branchial pouches of the embryo to form the thymus. Each follicle is surrounded by a vascular plexus, from which vessels pass into the interior, and radiate from the periphery toward the center, forming a second zone just within the margin of the medullary portion. In the center of the medullary portion there are very few vessels, and they are of minute size." [http://en.wikipedia.org/wiki/Thymus#Medulla] +subset: efo_slim +subset: pheno_slim +synonym: "medulla of thymus gland" EXACT [OBOL:automatic] +synonym: "thymus gland medulla" EXACT [OBOL:automatic] +synonym: "thymus medulla" EXACT [] +xref: BTO:0004560 +xref: EFO:0001969 +xref: EMAPA:19305 +xref: FMA:72206 +xref: http://linkedlifedata.com/resource/umls/id/C0229949 +xref: http://www.snomedbrowser.com/Codes/Details/188344009 +xref: MA:0000771 +xref: Medulla +xref: NCIT:C33775 +xref: UMLS:C0229949 {source="ncithesaurus:Thymus_Medulla"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0000958 ! medulla of organ +intersection_of: UBERON:0000958 ! medulla of organ +intersection_of: part_of UBERON:0002370 ! thymus +relationship: part_of UBERON:0002370 ! thymus +relationship: present_in_taxon NCBITaxon:7955 {source="https://doi.org/10.1177/0192623311409597"} + +[Term] +id: UBERON:0002125 +name: thymus lobule +def: "A lobule that is part of a thymus. Divided into an outer cortex and inner medulla and separated from each other by connective tissue septa, but with the medullary tissue continuous from lobule to lobule.[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Thymic_Lobule] +subset: pheno_slim +synonym: "lobule of thymus" EXACT [FMA:72215] +synonym: "thymic lobule" EXACT [] +synonym: "thymus lobule" EXACT [MA:0000770] +xref: FMA:72215 +xref: http://linkedlifedata.com/resource/umls/id/C1522462 +xref: http://www.snomedbrowser.com/Codes/Details/187882006 +xref: MA:0000770 +xref: NCIT:C33772 +xref: UMLS:C1522462 {source="ncithesaurus:Thymic_Lobule"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0009911 ! lobule +intersection_of: UBERON:0009911 ! lobule +intersection_of: part_of UBERON:0002370 ! thymus +relationship: contributes_to_morphology_of UBERON:0002370 ! thymus +relationship: part_of UBERON:0002370 ! thymus + +[Term] +id: UBERON:0002126 +name: solitary tract nuclear complex +def: "The solitary tract and nucleus are structures in the brainstem that carry and receive visceral sensation and taste from the facial (VII), glossopharyngeal (IX) and vagus (X) cranial nerves. [WP,unvetted]." [http://en.wikipedia.org/wiki/Nucleus_of_tractus_solitarius] +subset: uberon_slim +synonym: "nuclei of solitary tract" EXACT [] +synonym: "nucleus tractus solitarii" EXACT LATIN [FMA:72242, FMA:TA] +synonym: "solitary nuclei" EXACT [] +xref: FMA:72242 +xref: http://en.wikipedia.org/wiki/Nucleus_of_tractus_solitarius +xref: http://www.snomedbrowser.com/Codes/Details/369080003 +is_a: UBERON:0007245 ! nuclear complex of neuraxis +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: part_of UBERON:0001896 {source="MA-abduced"} ! medulla oblongata + +[Term] +id: UBERON:0002127 +name: inferior olivary complex +def: "largest nucleus situated in the olivary body, part of the medulla oblongata. It is closely associated with the cerebellum, but its specific function is voluntary body movements." [http://en.wikipedia.org/wiki/Inferior_olivary_nucleus] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "caudal olivary nuclei" RELATED [BTO:0002298] +synonym: "complexus olivaris inferior" RELATED [BTO:0002298] +synonym: "complexus olivaris inferior; nuclei olivares inferiores" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_olivary_nucleus] +synonym: "inferior olivary complex (Vieussens)" RELATED [NeuroNames:748] +synonym: "inferior olivary nuclear complex" EXACT [FMA:72243] +synonym: "inferior olivary nuclei" RELATED [BTO:0002298] +synonym: "inferior olivary nucleus" RELATED [FMA:72243] +synonym: "inferior olive" EXACT [FMA:72243] +synonym: "nuclei olivares caudales" RELATED [BTO:0002298] +synonym: "nuclei olivares inferiores" RELATED [BTO:0002298] +synonym: "nucleus olivaris caudalis" RELATED LATIN [NeuroNames:748] +synonym: "nucleus olivaris inferior" RELATED LATIN [NeuroNames:748] +synonym: "oliva" EXACT LATIN [FMA:72243, FMA:TA] +synonym: "regio olivaris inferior" RELATED LATIN [NeuroNames:748] +xref: BAMS:ifol +xref: BAMS:IO +xref: BIRNLEX:1164 +xref: BM:Me-IO +xref: BTO:0002298 +xref: DHBA:12600 +xref: EMAPA:19241 +xref: EV:0100277 +xref: FMA:72243 +xref: HBA:9560 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=748 {source="BIRNLEX:1164"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=748 +xref: http://en.wikipedia.org/wiki/Inferior_olivary_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0228540 +xref: MA:0001040 +xref: MBA:83 +xref: TAO:0000215 +xref: UMLS:C0228540 {source="BIRNLEX:1164"} +xref: VHOG:0001627 +xref: ZFA:0000215 +is_a: UBERON:0007245 ! nuclear complex of neuraxis +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: part_of UBERON:0000128 ! olivary body + +[Term] +id: UBERON:0002128 +name: superior olivary complex +def: "A a collection of brainstem nuclei that functions in multiple aspects of hearing and is an important component of the ascending and descending auditory pathways of the auditory system." [http://en.wikipedia.org/wiki/Superior_olivary_complex, ISBN:0-19-502694-2] +subset: uberon_slim +synonym: "nucleus olivaris superior" EXACT LATIN [FMA:72247, FMA:TA] +synonym: "regio olivaris superioris" RELATED LATIN [NeuroNames:569] +synonym: "superior olivary nuclei" EXACT [FMA:72247] +synonym: "superior olivary nucleus" RELATED INCONSISTENT [FMA:72247] +synonym: "superior olivary nucleus (Barr & Kiernan)" RELATED [NeuroNames:569] +synonym: "superior olive" RELATED INCONSISTENT [FMA:72247, ISBN:0-19-502694-2] +xref: BAMS:SOC +xref: BIRNLEX:1307 +xref: DHBA:12462 +xref: EMAPA:35840 +xref: EV:0100263 +xref: FMA:72247 +xref: HBA:9177 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=569 {source="BIRNLEX:1307"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=569 +xref: http://en.wikipedia.org/wiki/Superior_olivary_complex +xref: http://linkedlifedata.com/resource/umls/id/C0175427 +xref: MA:0001026 +xref: MBA:398 +xref: UMLS:C0175427 {source="BIRNLEX:1307"} +xref: VHOG:0001381 +is_a: UBERON:0007245 ! nuclear complex of neuraxis +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: part_of UBERON:0003023 {source="NIFSTD"} ! pontine tegmentum +relationship: part_of UBERON:0016490 ! auditory system + +[Term] +id: UBERON:0002129 +name: cerebellar cortex +def: "The superficial gray matter of the cerebellum. It consists of three main layers, the molecular layer, the Purkinje cell layer and the granule cell layer." [BIRNLEX:1566] +comment: The circuits in the cerebellar cortex look similar across all classes of vertebrates, including fish, reptiles, birds, and mammals (e.g., Fig. 2). This has been taken as evidence that the cerebellum performs functions important to all vertebrate species. (Wikipedia) +subset: pheno_slim +subset: uberon_slim +synonym: "cortex cerebellaris" RELATED [BTO:0000043] +synonym: "cortex cerebelli" RELATED LATIN [NeuroNames:647] +synonym: "cortex of cerebellar hemisphere" EXACT [DMBA:CbHCx] +xref: BAMS:CB +xref: BAMS:CbCx +xref: BAMS:CBX +xref: BIRNLEX:1566 +xref: BM:CB-Cbx +xref: BTO:0000043 +xref: CALOHA:TS-2000 +xref: Cerebellar:cortex +xref: DHBA:10657 +xref: DMBA:16939 +xref: EMAPA:35211 +xref: EV:0100294 +xref: FMA:72248 +xref: GAID:596 +xref: HBA:4697 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=647 {source="BIRNLEX:1566"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=647 +xref: http://linkedlifedata.com/resource/umls/id/C0007759 +xref: http://linkedlifedata.com/resource/umls/id/C1284087 +xref: http://www.snomedbrowser.com/Codes/Details/361593004 +xref: MA:0000199 +xref: MBA:528 +xref: MESH:D002525 +xref: NCIT:C49216 +xref: UMLS:C0007759 {source="ncithesaurus:Cerebellar_Cortex"} +xref: UMLS:C0007759 {source="BIRNLEX:1566"} +xref: UMLS:C1284087 {source="BIRNLEX:1566"} +xref: VHOG:0001597 +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: contributes_to_morphology_of UBERON:0002037 ! cerebellum +relationship: part_of UBERON:0002037 ! cerebellum + +[Term] +id: UBERON:0002130 +name: cerebellar nuclear complex +alt_id: UBERON:0004007 +def: "The gray matter nuclei located in the center of the cerebellum, embedded in the white matter, which receive inhibitory (GABAergic) inputs from Purkinje cells in the cerebellar cortex and excitatory (glutamatergic) inputs from mossy fiber pathways; all output fibers of the cerebellum originate from the these nuclei[MP]" [http://en.wikipedia.org/wiki/Deep_cerebellar_nuclei, MP:0009979] +subset: uberon_slim +synonym: "central nuclei" EXACT [] +synonym: "cerebellar nuclei" EXACT [] +synonym: "deep cerebellar nuclear complex" EXACT [BIRNLEX:1568] +synonym: "deep cerebellar nuclei" EXACT [] +synonym: "intracerebellar nuclei" EXACT [] +synonym: "intrinsic nuclei of cerebellum" EXACT [] +synonym: "nuclei cerebellares" RELATED LATIN [NeuroNames:682] +synonym: "nuclei cerebellaris" RELATED LATIN [NeuroNames:682] +synonym: "nuclei cerebelli" EXACT LATIN [FMA:72249, FMA:TA] +synonym: "nuclei cerebelli" RELATED LATIN [http://en.wikipedia.org/wiki/Deep_cerebellar_nuclei] +synonym: "roof nuclei-2" EXACT [] +xref: BAMS:CBN +xref: BAMS:CBn +xref: BAMS:DCb +xref: BAMS:DNC +xref: BIRNLEX:1568 +xref: DHBA:10660 +xref: EV:0100299 +xref: FMA:72249 +xref: GAID:599 +xref: HBA:4780 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=682 {source="BIRNLEX:1568"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=682 +xref: http://en.wikipedia.org/wiki/Deep_cerebellar_nuclei +xref: http://linkedlifedata.com/resource/umls/id/C0007763 +xref: MBA:519 +xref: MESH:D002529 +xref: UMLS:C0007763 {source="BIRNLEX:1568"} +is_a: UBERON:0007245 ! nuclear complex of neuraxis +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: part_of UBERON:0002037 ! cerebellum + +[Term] +id: UBERON:0002131 +name: anterior lobe of cerebellum +def: "the region of the cerebellum that is anterior to the primary fissure" [ISBN:0838580343, MP:0009960] +subset: pheno_slim +subset: uberon_slim +synonym: "anterior cerebellar lobe" EXACT [] +synonym: "anterior lobe of cerebellum" EXACT [] +synonym: "anterior lobe of the cerebellum" EXACT [BIRNLEX:1118] +synonym: "cerebellar anterior lobe" EXACT [] +synonym: "cerebellum anterior lobe" EXACT [] +synonym: "palaeocerebellum" RELATED [http://en.wikipedia.org/wiki/Anterior_lobe_of_cerebellum] +xref: BAMS:ALCb +xref: BAMS:ANT +xref: BAMS:Ant +xref: BIRNLEX:1118 +xref: BTO:0000496 +xref: DHBA:12838 +xref: EMAPA:35215 +xref: EV:0100295 +xref: FMA:72251 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=650 +xref: http://en.wikipedia.org/wiki/Anterior_lobe_of_cerebellum +xref: http://www.snomedbrowser.com/Codes/Details/279359004 +xref: MA:0000991 +xref: VHOG:0001598 +is_a: UBERON:0005293 ! cerebellum lobe +disjoint_from: UBERON:0004002 {source="lexical"} ! posterior lobe of cerebellum +relationship: contributes_to_morphology_of UBERON:0002129 ! cerebellar cortex + +[Term] +id: UBERON:0002132 +name: dentate nucleus +alt_id: UBERON:0008996 +def: "the largest and most lateral of the deep cerebellum nuclei; it receives axons of Purkinje cells in the lateral cerebellar hemisphere (neocerebellum) and receives its afferents from the premotor cortex and the supplementary motor cortex through the pontocerebellar system, and its efferents project through the superior cerebellar peduncle and is a major source of its fibers" [ISBN:0-683-40008-8, MP:0009980] +subset: pheno_slim +subset: uberon_slim +synonym: "dentate cerebellar nucleus" EXACT [BIRNLEX:1171] +synonym: "dentate nucleus" RELATED [http://en.wikipedia.org/wiki/Dentate_nucleus] +synonym: "dentate nucleus (Vicq d'Azyr)" RELATED [NeuroNames:683] +synonym: "dentatothalamocortical fibers" RELATED [http://en.wikipedia.org/wiki/Dentate_nucleus] +synonym: "lateral cerebellar nucleus" EXACT [] +synonym: "lateral nucleus of cerebellum" EXACT [] +synonym: "nucleus dentatus" RELATED [http://en.wikipedia.org/wiki/Dentate_nucleus] +synonym: "nucleus dentatus" RELATED LATIN [http://en.wikipedia.org/wiki/Dentate_nucleus] +synonym: "nucleus dentatus cerebelli" RELATED LATIN [NeuroNames:683] +synonym: "nucleus lateralis cerebelli" RELATED LATIN [NeuroNames:683] +xref: BAMS:DN +xref: BAMS:Dt +xref: BIRNLEX:1171 +xref: BM:CB-CBL +xref: BTO:0003836 +xref: Dentate:nucleus +xref: EV:0100300 +xref: FMA:72260 +xref: HBA:12946 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=683 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=683 {source="BIRNLEX:1171"} +xref: http://linkedlifedata.com/resource/umls/id/C0086120 +xref: http://www.snomedbrowser.com/Codes/Details/279221005 +xref: MA:0001008 +xref: MBA:846 +xref: UMLS:C0086120 {source="BIRNLEX:1171"} +xref: VHOG:0001700 +is_a: UBERON:0008995 ! nucleus of cerebellar nuclear complex +disjoint_from: UBERON:0002153 {source="lexical"} ! fastigial nucleus + +[Term] +id: UBERON:0002133 +name: atrioventricular valve +def: "A cardial valve in the atrioventricular region that separates the atrium from the ventricle and prevent backflow from the ventricles into the atria during systole." [http://en.wikipedia.org/wiki/Heart_valve#Atrioventricular_valves, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: vertebrate_core +synonym: "atrio-ventricular valve" RELATED [EMAPA:35154] +synonym: "AV valve" EXACT [] +xref: Atrioventricular_valves +xref: EHDAA2:0000153 +xref: EHDAA:7421 +xref: EMAPA:35154 +xref: FMA:7233 +xref: galen:AtrioventricularValve +xref: http://www.snomedbrowser.com/Codes/Details/11124005 +xref: MA:0002789 +xref: OpenCyc:Mx4rfCfdorrpEduAAAACs6hRXg +xref: TAO:0005064 +xref: VHOG:0001472 +xref: ZFA:0005064 +is_a: UBERON:0000946 ! cardial valve +relationship: attaches_to UBERON:0004292 {source="FMA"} ! cardiac skeleton +relationship: connects UBERON:0002081 ! cardiac atrium +relationship: connects UBERON:0002082 ! cardiac ventricle +relationship: has_part UBERON:0005994 ! chorda tendineae +relationship: part_of UBERON:0011820 {source="EHDAA2"} ! atrioventricular region + +[Term] +id: UBERON:0002134 +name: tricuspid valve +def: "An atrioventricular valve that is part of the outflow part of the right atrium." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "right atrioventricular valve" EXACT [FMA:7234] +synonym: "valva atrioventricularis dextra" EXACT LATIN [FMA:7234, FMA:TA] +synonym: "valvula tricuspidalis" RELATED LATIN [http://en.wikipedia.org/wiki/Tricuspid_valve] +xref: EHDAA2:0004029 +xref: EHDAA:7427 +xref: EMAPA:17873 +xref: FMA:7234 +xref: GAID:567 +xref: galen:TricuspidValve +xref: http://linkedlifedata.com/resource/umls/id/C0040960 +xref: http://www.snomedbrowser.com/Codes/Details/181288007 +xref: MA:0000090 +xref: MESH:D014261 +xref: NCIT:C12805 +xref: OpenCyc:Mx4rvuWAAJwpEbGdrcN5Y29ycA +xref: RETIRED_EHDAA2:0002081 +xref: Tricuspid:valve +xref: UMLS:C0040960 {source="ncithesaurus:Tricuspid_Valve"} +xref: VHOG:0000816 +is_a: UBERON:0002133 ! atrioventricular valve +is_a: UBERON:0005208 ! right atrium valve +intersection_of: UBERON:0002133 ! atrioventricular valve +intersection_of: part_of UBERON:0005965 ! outflow part of right atrium +relationship: connects UBERON:0002078 ! right cardiac atrium +relationship: connects UBERON:0002080 ! heart right ventricle +relationship: part_of UBERON:0005965 ! outflow part of right atrium + +[Term] +id: UBERON:0002135 +name: mitral valve +def: "An atrioventricular valve that is part of the outflow part of the left atrium." [http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "bicuspid valve" RELATED [] +synonym: "left atrioventricular valve" EXACT [] +synonym: "valva atrioventricularis sinistra" EXACT LATIN [FMA:7235, FMA:TA] +synonym: "valva mitralis" RELATED LATIN [http://en.wikipedia.org/wiki/Mitral_valve] +xref: EFO:0003933 +xref: EHDAA2:0000168 +xref: EMAPA:17871 +xref: FMA:7235 +xref: GAID:565 +xref: galen:MitralValve +xref: http://linkedlifedata.com/resource/umls/id/C0026264 +xref: http://www.snomedbrowser.com/Codes/Details/181286006 +xref: MA:0000088 +xref: MESH:D008943 +xref: Mitral:valve +xref: NCIT:C12753 +xref: OpenCyc:Mx4rv4l2nJwpEbGdrcN5Y29ycA +xref: UMLS:C0026264 {source="ncithesaurus:Mitral_Valve"} +xref: VHOG:0000817 +is_a: UBERON:0002133 ! atrioventricular valve +intersection_of: UBERON:0002133 ! atrioventricular valve +intersection_of: part_of UBERON:0005966 ! outflow part of left atrium +disjoint_from: UBERON:0007120 ! premolar tooth +relationship: attaches_to UBERON:0005995 {source="FMA"} ! mitral valve anulus +relationship: connects UBERON:0002079 {source="FMA"} ! left cardiac atrium +relationship: connects UBERON:0002084 {source="FMA"} ! heart left ventricle +relationship: part_of UBERON:0005966 ! outflow part of left atrium + +[Term] +id: UBERON:0002136 +name: hilus of dentate gyrus +def: "Layer of the dentate gyrus lying deep to the granule cell layer, within the opening of the C or V formed by the granule cell layer characterized by loosely packed polymorphic cells" [BIRNLEX:1482] +comment: Merge with CA4? +synonym: "CA4" RELATED [] +synonym: "dentate gyrus hilus" EXACT [] +synonym: "field CA4 of hippocampal formation" EXACT [] +synonym: "hilus gyri dentati" RELATED LATIN [NeuroNames:181] +synonym: "hilus of the dentate gyrus" RELATED [NeuroNames:181] +synonym: "multiform layer of dentate gyrus" RELATED [FMA:72358] +synonym: "polymorphic later of dentate gyrus" RELATED [FMA:72358] +synonym: "region CA4" RELATED [NeuroNames:181] +xref: BAMS:hdg +xref: BAMS:Hil +xref: BIRNLEX:1482 +xref: EMAPA:35277 +xref: FMA:72358 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=181 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=181 {source="BIRNLEX:1482"} +xref: http://linkedlifedata.com/resource/umls/id/C1134421 +xref: MA:0000947 +xref: UMLS:C1134421 {source="BIRNLEX:1482"} +is_a: UBERON:0005401 ! cerebral hemisphere gray matter +relationship: part_of UBERON:0001885 {source="NIFSTD"} ! dentate gyrus of hippocampal formation + +[Term] +id: UBERON:0002137 +name: aortic valve +def: "Cardiac valve which has as its parts the anterior, right posterior and left posterior cusps, attached to the fibrous ring of aortic valve.[FMA]" [FMA:FMA, http://en.wikipedia.org/wiki/Aortic_valve] +comment: Human variation: It is normally tricuspid (with three leaflets), although in 1% of the population it is found to be congenitally bicuspid (two leaflets) +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "valva aortae" RELATED LATIN [http://en.wikipedia.org/wiki/Aortic_valve] +xref: Aortic:valve +xref: BTO:0004628 +xref: EFO:0003879 +xref: EHDAA2:0000134 +xref: EHDAA:4410 +xref: EMAPA:17870 +xref: FMA:7236 +xref: GAID:563 +xref: galen:AorticValve +xref: http://linkedlifedata.com/resource/umls/id/C0003501 +xref: http://www.snomedbrowser.com/Codes/Details/181287002 +xref: MA:0000087 +xref: MESH:D001021 +xref: NCIT:C12670 +xref: OpenCyc:Mx4rv5914JwpEbGdrcN5Y29ycA +xref: UMLS:C0003501 {source="ncithesaurus:Aortic_Valve"} +xref: VHOG:0000815 +is_a: UBERON:0005623 {source="MA"} ! semi-lunar valve +relationship: part_of UBERON:0005956 ! outflow part of left ventricle + +[Term] +id: UBERON:0002138 +name: habenulo-interpeduncular tract +def: "White matter tract containing fibers projecting from the habenular nuclei to the interpeduncular nucleus (Maryann Martone)" [BIRNLEX:1504] +subset: vertebrate_core +synonym: "fasciculus habenulo-interpeduncularis" RELATED LATIN [NeuroNames:2318] +synonym: "fasciculus retroflexi" RELATED PLURAL [ZFA:0000353] +synonym: "fasciculus retroflexus" EXACT [ISBN:0471888893] +synonym: "fasciculus retroflexus (Meynert)" EXACT [BIRNLEX:1504] +synonym: "fasciculus retroflexus (of Meynert)" RELATED LATIN [NeuroNames:2318] +synonym: "habenulointerpeduncular fasciculus" EXACT [] +synonym: "habenulointerpeduncular tract" RELATED [] +synonym: "habenulopeduncular tract" EXACT [] +synonym: "Meynert's retroflex bundle" EXACT [] +synonym: "rf" RELATED ABBREVIATION [DMBA:17790] +synonym: "tractus habenulo-intercruralis" RELATED LATIN [NeuroNames:2318] +synonym: "tractus habenulo-interpeduncularis" EXACT [ZFA:0000353] +synonym: "tractus habenulointercruralis" RELATED LATIN [NeuroNames:2318] +synonym: "tractus habenulointerpeduncularis" RELATED LATIN [NeuroNames:2318] +synonym: "tractus retroflexus (Meynert)" RELATED LATIN [NeuroNames:2318] +xref: BAMS:fr +xref: BIRNLEX:1504 +xref: BM:HPT +xref: DMBA:17790 +xref: EMAPA:36606 +xref: FMA:72400 +xref: HBA:12953 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2318 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2318 {source="BIRNLEX:1504"} +xref: http://linkedlifedata.com/resource/umls/id/C0228391 +xref: http://www.snomedbrowser.com/Codes/Details/369194000 +xref: MBA:595 +xref: TAO:0000353 +xref: UMLS:C0228391 {source="BIRNLEX:1504"} +xref: ZFA:0000353 +is_a: UBERON:0005838 ! fasciculus of brain + +[Term] +id: UBERON:0002139 +name: subcommissural organ +def: "The subcommissural organ is a circumventricular organ consisting of ependymal cells which secrete SCO-spondin[WP,partially vetted]." [http://en.wikipedia.org/wiki/Subcommissural_organ, http://www.ncbi.nlm.nih.gov/pubmed/9579598] +comment: Occurs throughout the vertebartes [PMID:9579598, DOI:10.1002/ar.1091260210]. First appears in hagfish(Olsson). In many species, including the human, it reaches its full development during embryonic life[PMID:9579598]. During the course of phyletic evolution, one notes various changes. Indeed, in lower vertebrates, the SCO presents a greater degree of enzyme activity than the ependyma while in birds the ependyma demonstrates a more intense activity than the SCO[PMID:479574] Sometimes preceded by flexural organ[DOI:10.1007/BF00303086] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "cerebral aqueduct subcommissural organ" RELATED [BAMS:SCO] +synonym: "corpus subcommissurale" RELATED LATIN [NeuroNames:483] +synonym: "dorsal subcommissural organ" RELATED [] +synonym: "organum subcommissurale" RELATED LATIN [http://en.wikipedia.org/wiki/Subcommissural_organ] +synonym: "SCO" RELATED [] +xref: BAMS:SCO +xref: BIRNLEX:1028 +xref: BTO:0001820 +xref: CALOHA:TS-0986 +xref: DHBA:12101 +xref: DMBA:16514 +xref: EMAPA:35828 +xref: FMA:72414 +xref: GAID:794 +xref: HBA:9489 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=483 {source="BIRNLEX:1028"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=483 +xref: http://linkedlifedata.com/resource/umls/id/C0038533 +xref: http://www.snomedbrowser.com/Codes/Details/369193006 +xref: MA:0002941 +xref: MESH:A08.713.810 +xref: Subcommissural:organ +xref: TAO:0000683 +xref: UMLS:C0038533 {source="BIRNLEX:1028"} +xref: ZFA:0000683 +is_a: UBERON:0010134 {source="MA"} ! secretory circumventricular organ +relationship: part_of UBERON:0002314 {source="MA"} ! midbrain tectum +relationship: part_of UBERON:0011357 ! Reissner's fiber +relationship: present_in_taxon NCBITaxon:7742 {source="multiple"} + +[Term] +id: UBERON:0002140 +name: parabigeminal nucleus +def: "Cholinergic cell group that is located ventral to the brachium of the inferior colliculus (in rat) and has reciprocal connectivity with the superior colliculus (Adapted from Paxinos, The rat central nervous system, 2nd ed, 1995, pg 865" [BIRNLEX:1007] +synonym: "corpus parabigeminum" RELATED LATIN [NeuroNames:482] +synonym: "nucleus isthmi" RELATED [VHOG:0001701] +synonym: "nucleus parabigeminalis" EXACT [NeuroNames:482] +synonym: "parabigeminal nucleus (Bechterew)" RELATED [NeuroNames:482] +synonym: "parageminal nucleus" RELATED [BAMS:PBG] +xref: BAMS:PBG +xref: BIRNLEX:1007 +xref: BM:PBG +xref: DHBA:12312 +xref: DMBA:16862 +xref: EMAPA:35656 +xref: FMA:72415 +xref: HBA:9111 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=482 {source="BIRNLEX:1007"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=482 +xref: http://linkedlifedata.com/resource/umls/id/C0262301 +xref: MA:0001074 +xref: MBA:874 +xref: UMLS:C0262301 {source="BIRNLEX:1007"} +xref: VHOG:0001701 +is_a: UBERON:0011214 {source="FMA", source="NIF"} ! nucleus of midbrain tectum + +[Term] +id: UBERON:0002141 +name: parvocellular oculomotor nucleus +def: "Nucleus that is part of the oculomotor nerve complex consisting of preganglionic parasympathetic neurons situated close to the midline at the level of the superior colliculus (Heimer, the Human Brain and Spinal Cord, 1994, pg 244)" [BIRNLEX:822] +subset: uberon_slim +subset: vertebrate_core +synonym: "accessory oculomotor nucleus" EXACT [http://en.wikipedia.org/wiki/Edinger-westphal_nucleus] +synonym: "Edinger-Westphal nucleus" EXACT [http://en.wikipedia.org/wiki/Edinger-westphal_nucleus, MA:0001071] +synonym: "Edinger-Westphal nucleus of oculomotor nerve" RELATED [NeuroNames:498] +synonym: "EW" BROAD ABBREVIATION [HBA:9449] +synonym: "nuclei accessorii nervi oculomtorii (Edinger-Westphal)" RELATED LATIN [NeuroNames:498] +synonym: "nucleus Edinger Westphal" RELATED LATIN [NeuroNames:498] +synonym: "nucleus Edinger-Westphal" EXACT [ZFA:0000244] +synonym: "nucleus nervi oculomotorii Edinger-Westphal" RELATED LATIN [NeuroNames:498] +synonym: "nucleus nervi oculomotorii parvocellularis" RELATED LATIN [NeuroNames:498] +synonym: "nucleus rostralis nervi oculomotorii" RELATED LATIN [NeuroNames:498] +synonym: "nucleus Westphal-Edinger" RELATED LATIN [NeuroNames:498] +synonym: "oculomotor nucleus, parvicellular part" RELATED [NeuroNames:498] +synonym: "oculomotor nucleus, parvocellular part" RELATED INCONSISTENT [BIRNLEX:822] +synonym: "PC3" BROAD ABBREVIATION [BIRNLEX:822, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:EW +xref: BAMS:PC3 +xref: BIRNLEX:822 +xref: BM:EW +xref: DHBA:12219 +xref: Edinger-westphal:nucleus +xref: EMAPA:35302 +xref: FMA:72424 +xref: HBA:9449 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=498 {source="BIRNLEX:822"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=498 +xref: http://linkedlifedata.com/resource/umls/id/C0228416 +xref: http://www.snomedbrowser.com/Codes/Details/62088007 +xref: MA:0001071 +xref: MBA:975 +xref: TAO:0000244 +xref: UMLS:C0228416 {source="BIRNLEX:822"} +xref: ZFA:0000244 +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus +relationship: part_of UBERON:0001943 {source="FMA", source="MA", source="ZFA"} ! midbrain tegmentum + +[Term] +id: UBERON:0002142 +name: pedunculopontine tegmental nucleus +def: "The pedunculopontine nucleus (PPN) (or pedunculopontine tegmental nucleus, PPTN) is located in the brainstem, caudal to the substantia nigra and adjacent to the superior cerebellar peduncle. It is composed by a wide variety of neurochemical cell types, including cholinergic, glutamatergic and GABAergic cells. In the classical sense, the PPN is considered to be one of the main components of the reticular activating system. [WP,unvetted]." [http://en.wikipedia.org/wiki/Pedunculopontine_tegmental_nucleus, https://github.com/obophenotype/mouse-anatomy-ontology/issues/95] +subset: uberon_slim +synonym: "nucleus pedunculopontinus" RELATED LATIN [NeuroNames:504] +synonym: "nucleus tegmenti pedunculopontinus" RELATED LATIN [NeuroNames:504] +synonym: "peduncular pontine nucleus" EXACT [] +synonym: "pedunculopontine nucleus" EXACT [] +synonym: "PPTg" BROAD ABBREVIATION [BIRNLEX:1437, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:PPN +xref: BAMS:PPTg +xref: BIRNLEX:1437 +xref: BM:Pons-PPT +xref: DHBA:12413 +xref: DMBA:16965 +xref: EMAPA:35672 +xref: FMA:72429 +xref: HBA:9021 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=504 {source="BIRNLEX:1437"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=504 +xref: http://en.wikipedia.org/wiki/Pedunculopontine_tegmental_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0262306 +xref: MA:0001020 +xref: MBA:1052 +xref: UMLS:C0262306 {source="BIRNLEX:1437"} +is_a: UBERON:0007415 ! nucleus of midbrain reticular formation + +[Term] +id: UBERON:0002143 +name: dorsal tegmental nucleus +subset: vertebrate_core +synonym: "dorsal tegmental nucleus (Gudden)" EXACT [] +synonym: "dorsal tegmental nucleus of Gudden" EXACT [BIRNLEX:992] +synonym: "DTg" BROAD ABBREVIATION [BIRNLEX:992, NIFSTD:NeuroNames_abbrevSource] +synonym: "DTN" RELATED ABBREVIATION [ZFA:0000346] +synonym: "ganglion dorsale tegmenti" RELATED LATIN [NeuroNames:517] +synonym: "gudden nucleus" EXACT [] +synonym: "nucleus compactus suprafascicularis" RELATED LATIN [NeuroNames:517] +synonym: "nucleus dorsalis tegmenti" RELATED LATIN [NeuroNames:517] +synonym: "nucleus dorsalis tegmenti (Gudden)" RELATED LATIN [NeuroNames:517] +synonym: "nucleus opticus dorsalis" RELATED LATIN [NeuroNames:517] +synonym: "nucleus tegmentalis dorsalis" EXACT [ZFA:0000346] +synonym: "nucleus tegmentalis posterior" EXACT LATIN [FMA:72434, FMA:TA] +synonym: "nucleus tegmenti dorsale" RELATED LATIN [NeuroNames:517] +synonym: "posterior tegmental nucleus" EXACT [] +synonym: "von Gudden's nucleus" EXACT [] +xref: BAMS:DTg +xref: BAMS:DTN +xref: BIRNLEX:992 +xref: BM:TD +xref: DHBA:12508 +xref: DMBA:17000 +xref: EMAPA:35294 +xref: FMA:72434 +xref: HBA:265504876 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=517 {source="BIRNLEX:992"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=517 +xref: http://linkedlifedata.com/resource/umls/id/C0175393 +xref: MA:0001013 +xref: MBA:880 +xref: TAO:0000346 +xref: UMLS:C0175393 {source="BIRNLEX:992"} +xref: VHOG:0001368 +xref: ZFA:0000346 +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus +disjoint_from: UBERON:0010036 {source="lexical"} ! anterior tegmental nucleus +relationship: part_of UBERON:0001943 ! midbrain tegmentum + +[Term] +id: UBERON:0002144 +name: peripeduncular nucleus +def: "A group of neuron cell bodies that form a thin, caplike configuration over the dorsolateral aspect of the crus cerebri; many of its cells are acetylcholinesterase positive." [http://www.medilexicon.com/medicaldictionary.php?t=61630] +synonym: "nucleus peripeduncularis" RELATED LATIN [NeuroNames:520] +synonym: "nucleus peripeduncularis thalami" RELATED LATIN [NeuroNames:520] +synonym: "peripeduncular nucleus of pons" EXACT [FMA:72437] +synonym: "PPd" BROAD ABBREVIATION [BIRNLEX:1474, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:PP +xref: BAMS:PPd +xref: BIRNLEX:1474 +xref: BM:MB-PPN +xref: DHBA:12285 +xref: DMBA:16342 +xref: EMAPA:37717 {source="MA:th"} +xref: FMA:72437 +xref: HBA:9050 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=520 {source="BIRNLEX:1474"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=520 +xref: http://linkedlifedata.com/resource/umls/id/C0152368 +xref: http://www.snomedbrowser.com/Codes/Details/25949000 +xref: MA:0000875 +xref: MBA:1044 +xref: UMLS:C0152368 {source="BIRNLEX:1474"} +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0007414 ! nucleus of midbrain tegmentum +is_a: UBERON:0009661 ! midbrain nucleus +relationship: part_of UBERON:0001943 {source="NIFSTD"} ! midbrain tegmentum + +[Term] +id: UBERON:0002145 +name: interpeduncular nucleus +subset: vertebrate_core +synonym: "interpedunclear nucleus" RELATED [MTB:379] +synonym: "interpeduncular ganglion" EXACT [] +synonym: "interpeduncular nuclei" EXACT PLURAL [] +synonym: "interpeduncular nucleus (Gudden)" RELATED [NeuroNames:522] +synonym: "interpeduncular nucleus of midbrain" EXACT [] +synonym: "interpeduncular nucleus tegmentum" RELATED [TAO:0000903] +synonym: "IP" BROAD ABBREVIATION [BIRNLEX:1000, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus interpeduncularis" RELATED LATIN [NeuroNames:522] +synonym: "nucleus interpeduncularis medialis" RELATED LATIN [NeuroNames:522] +xref: BAMS:IPN +xref: BIRNLEX:1000 +xref: BM:MB-IP +xref: DHBA:12270 +xref: EMAPA:35439 +xref: FMA:72439 +xref: HBA:9012 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=522 {source="BIRNLEX:1000"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=522 +xref: http://linkedlifedata.com/resource/umls/id/C0175398 +xref: http://www.snomedbrowser.com/Codes/Details/369240002 +xref: MA:0001069 +xref: MBA:100 +xref: TAO:0000903 +xref: UMLS:C0175398 {source="BIRNLEX:1000"} +xref: ZFA:0000903 +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus +relationship: part_of UBERON:0001943 {source="NIF"} ! midbrain tegmentum + +[Term] +id: UBERON:0002146 +name: pulmonary valve +def: "the semilunar valve of the heart that lies between the right ventricle and the pulmonary artery." [http://en.wikipedia.org/wiki/Pulmonary_valve] +subset: pheno_slim +subset: uberon_slim +synonym: "pulmonic valve" EXACT [] +synonym: "valva trunci pulmonalis" RELATED LATIN [http://en.wikipedia.org/wiki/Pulmonary_valve] +xref: EHDAA2:0001577 +xref: EHDAA:4412 +xref: EMAPA:17872 +xref: FMA:7246 +xref: GAID:566 +xref: galen:PulmonaryValve +xref: http://linkedlifedata.com/resource/umls/id/C0034086 +xref: http://www.snomedbrowser.com/Codes/Details/181289004 +xref: MA:0000089 +xref: MESH:D011664 +xref: NCIT:C12775 +xref: OpenCyc:Mx4rwP6uq5wpEbGdrcN5Y29ycA +xref: Pulmonary:valve +xref: UMLS:C0034086 {source="ncithesaurus:Pulmonary_Valve"} +xref: VHOG:0000814 +is_a: UBERON:0005623 ! semi-lunar valve +intersection_of: UBERON:0005623 ! semi-lunar valve +intersection_of: connects UBERON:0002012 ! pulmonary artery +intersection_of: connects UBERON:0002082 ! cardiac ventricle +relationship: connects UBERON:0002012 ! pulmonary artery +relationship: connects UBERON:0002082 ! cardiac ventricle + +[Term] +id: UBERON:0002147 +name: reticulotegmental nucleus +def: "The tegmental pontine reticular nucleus (or pontine reticular nucleus of the tegmentum) is an area within the floor of the midbrain. This area is known to affect the cerebellum with its axonal projections. These efferent connections have been proven to project not only ipsilaterally, but also to decussate and project to the contralateral side of the vermis. It has also been shown that the projections from the tegmenti pontis to the cerebellar lobes are only crossed fibers. The n.r. tegmenti pontis also receives afferent axons from the cerebellum. This nucleus is known for its large amount of multipolar cells and its particularly reticular structure. The n.r. tegmenti pontis is topographically related to pontine nuclei (non-reticular), being just dorsal to them. The nucleus reticularis has been known to mediate eye movements, otherwise known as so-called saccadic movement. This makes sense concerning their connections as it would require a nucleus which receives and projects to the cerebellum to mediate that kind of complex circuitry. Also, behaviorally this makes sense as no one thinks about saccadic movements when scanning a room and the saccadic movements are not directly controlled by the cortex. The nuclei of the cerebellum are the most traditionally studied mostly because it is easy to see which nuclei degrade when the cerebellum is amputated. The neurons of the lateral reticular formation are very important for reflexes and the mediation of posture. It has been shown in cats that electrical stimulation of the reticular formation can make a standing cat lie down. Conversely if the cat is stimulated in an alternate spot it can make a lying cat stand." [http://en.wikipedia.org/wiki/Tegmental_pontine_reticular_nucleus] +synonym: "nucleus reticularis tegmenti pontis" EXACT LATIN [FMA:72471, FMA:TA] +synonym: "reticular tegmental nucleus" EXACT [] +synonym: "reticulotegmental nucleus of pons" EXACT [] +synonym: "reticulotegmental nucleus of the pons" RELATED [BAMS:RtTg] +synonym: "tegmental reticular nucleus" RELATED [BAMS:TRN] +synonym: "tegmental reticular nucleus, pontine gray" EXACT [] +xref: BAMS:RtTg +xref: BAMS:TRN +xref: BIRNLEX:882 +xref: DHBA:12414 +xref: DHBA:12497 +xref: EMAPA:35736 +xref: FMA:72471 +xref: HBA:9167 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=568 +xref: http://en.wikipedia.org/wiki/Tegmental_pontine_reticular_nucleus +xref: MA:0001025 +xref: MBA:574 +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009662 ! hindbrain nucleus +relationship: part_of UBERON:0000988 ! pons +relationship: part_of UBERON:0002275 ! reticular formation + +[Term] +id: UBERON:0002148 +name: locus ceruleus +def: "The locus ceruleus is a dense cluster of neurons within the dorsorostral pons. This nucleus is the major location of neurons that release norepinephrine throughout the brain, and is responsible for physiological responses to stress and panic[GO]. Bluish region in the superior angle of the fourth ventricle floor, corresponding to melanin-like pigmented nerve cells which lie lateral to the ponto-mesencephalic central gray (griseum centrale). It is also known as nucleus pigmentosus pontis[GAID]." [GAID:577, GO:0021703, http://en.wikipedia.org/wiki/Locus_ceruleus] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "blue nucleus" EXACT [BIRNLEX:905] +synonym: "caerulean nucleus" EXACT [] +synonym: "loci coeruleus" RELATED PLURAL [ZFA:0000539] +synonym: "locus caeruleus" EXACT [BIRNLEX:905] +synonym: "locus cinereus" RELATED [BTO:0001408] +synonym: "locus coeruleu" EXACT [] +synonym: "locus coeruleus" EXACT [] +synonym: "locus coeruleus (Vicq d'Azyr)" RELATED [NeuroNames:583] +synonym: "nucleus caeruleus" EXACT LATIN [FMA:72478, FMA:TA] +synonym: "nucleus loci caerulei" RELATED LATIN [NeuroNames:583] +synonym: "nucleus of locus caeruleus" EXACT [] +synonym: "nucleus pigmentosus pontis" EXACT [BIRNLEX:905] +synonym: "substantia ferruginea" EXACT [BIRNLEX:905] +xref: BAMS:CAE +xref: BAMS:LC +xref: BIRNLEX:905 +xref: BM:Pons-LC +xref: BTO:0001408 +xref: DHBA:12819 +xref: DMBA:16972 +xref: EFO:0001963 +xref: EMAPA:35502 +xref: FMA:72478 +xref: GAID:577 +xref: HBA:9148 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=583 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=583 {source="BIRNLEX:905"} +xref: http://linkedlifedata.com/resource/umls/id/C0023951 +xref: http://www.snomedbrowser.com/Codes/Details/369016004 +xref: Locus:ceruleus +xref: MA:0001017 +xref: MBA:147 +xref: MESH:D008125 +xref: NCIT:C97333 +xref: TAO:0000539 +xref: UMLS:C0023951 {source="BIRNLEX:905"} +xref: UMLS:C0023951 {source="ncithesaurus:Locus_Coeruleus"} +xref: ZFA:0000539 +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009662 ! hindbrain nucleus +relationship: part_of UBERON:0003023 {notes="check ZFA", source="NIFSTD"} ! pontine tegmentum + +[Term] +id: UBERON:0002149 +name: superior salivatory nucleus +def: "Nucleus containing parasympathetic neurons giving rise to the parasympathetic division of the facial nerve, innervating the salivary glands (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 703)." [BIRNLEX:1131] +subset: uberon_slim +synonym: "nucleus salivarius superior" RELATED LATIN [NeuroNames:590] +synonym: "nucleus salivatorius cranialis" RELATED LATIN [NeuroNames:590] +synonym: "nucleus salivatorius rostralis" RELATED LATIN [NeuroNames:590] +synonym: "nucleus salivatorius superior" RELATED LATIN [NeuroNames:590] +synonym: "superior salivary nucleus" EXACT [GO:0021753] +xref: BAMS:SSN +xref: BAMS:SuS +xref: BIRNLEX:1131 +xref: DHBA:12435 +xref: EHDAA2:0004646 +xref: EMAPA:37756 {source="MA:th"} +xref: FMA:72482 +xref: HBA:9194 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=590 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=590 {source="BIRNLEX:1131"} +xref: http://en.wikipedia.org/wiki/Superior_salivatory_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0175447 +xref: http://www.snomedbrowser.com/Codes/Details/369028007 +xref: MA:0001027 +xref: MBA:462 +xref: UMLS:C0175447 {source="BIRNLEX:1131"} +is_a: UBERON:0000126 ! cranial nerve nucleus +is_a: UBERON:0004133 ! salivatory nucleus +is_a: UBERON:0007635 ! nucleus of medulla oblongata +relationship: develops_from UBERON:0010125 ! future superior salivatory nucleus +relationship: immediate_transformation_of UBERON:0010125 {evidence="definitional"} ! future superior salivatory nucleus +relationship: part_of UBERON:0003023 ! pontine tegmentum + +[Term] +id: UBERON:0002150 +name: superior cerebellar peduncle +def: "A composite structure of the brain stem, which in NeuroNames is subdivided into the superior cerebellar peduncle of pons, the decussation of superior cerebellar peduncle and the superior cerebellar peduncle of midbrain (MM)." [BIRNLEX:1711] +subset: pheno_slim +subset: uberon_slim +synonym: "brachium conjunctivum" EXACT [BIRNLEX:1711] +synonym: "crus cerebello-cerebrale" RELATED LATIN [NeuroNames:1736] +synonym: "pedunculus cerebellaris cranialis" RELATED LATIN [NeuroNames:1736] +synonym: "pedunculus cerebellaris rostralis" RELATED LATIN [NeuroNames:1736] +synonym: "pedunculus cerebellaris superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_cerebellar_peduncle] +synonym: "scp" RELATED ABBREVIATION [MBA:326] +synonym: "superior cerebelar peduncles" RELATED MISSPELLING [MBA:326] +synonym: "superior cerebellar peduncle (brachium conjuctivum)" RELATED [BAMS:scp] +synonym: "superior cerebellar peduncle (brachium conjunctivum)" RELATED [BAMS:scp] +synonym: "superior cerebellar peduncle (Galen, Stilling)" RELATED [NeuroNames:1736] +synonym: "superior peduncle" RELATED [http://en.wikipedia.org/wiki/Superior_cerebellar_peduncle] +synonym: "tractus cerebello-rubralis" RELATED LATIN [NeuroNames:1736] +synonym: "tractus cerebello-tegmentalis mesencephali" RELATED LATIN [NeuroNames:1736] +xref: BAMS:5 +xref: BAMS:scp +xref: BIRNLEX:1711 +xref: BM:BC +xref: DHBA:12354 +xref: DMBA:17793 +xref: HBA:9297 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1736 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1736 {source="BIRNLEX:1711"} +xref: http://en.wikipedia.org/wiki/Superior_cerebellar_peduncle +xref: http://linkedlifedata.com/resource/umls/id/C0152391 +xref: http://www.snomedbrowser.com/Codes/Details/279218008 +xref: MA:0002746 +xref: MBA:326 +xref: UMLS:C0152391 {source="BIRNLEX:1711"} +is_a: UBERON:0007416 ! cerebellar peduncle + +[Term] +id: UBERON:0002151 +name: pontine nuclear group +def: "Nuclei in the basal pons, intermingled among the descending axons from the cortex, that receive neocrotcial input and give rise to many axons that cross the midline to enter the contralateral cerebellum (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 2nd ed., 2005, pg 135)" [BIRNLEX:1516] +subset: uberon_slim +synonym: "nuclei brachii pontis" RELATED LATIN [NeuroNames:617] +synonym: "nuclei pontis" RELATED [BTO:0003396] +synonym: "nuclei pontis" RELATED LATIN [http://en.wikipedia.org/wiki/Pontine_nuclei] +synonym: "nucleus pontis" RELATED LATIN [NeuroNames:617] +synonym: "pontine gray" EXACT [BIRNLEX:1516] +synonym: "pontine gray matter" RELATED [BTO:0003396] +synonym: "pontine grey matter" RELATED [BAMS:PG] +synonym: "pontine nuclear complex" EXACT [BIRNLEX:1516] +synonym: "pontine nuclear group" EXACT [FMA:72512] +synonym: "pontine nuclei" EXACT [] +synonym: "pontine nucleus" EXACT [] +xref: BAMS:PG +xref: BAMS:Pn +xref: BIRNLEX:1516 +xref: BM:Pons-PGr +xref: BTO:0003396 +xref: DHBA:12406 +xref: EMAPA:35692 +xref: FMA:72512 +xref: HBA:9133 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=617 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=617 {source="BIRNLEX:1516"} +xref: http://linkedlifedata.com/resource/umls/id/C0228448 +xref: http://www.snomedbrowser.com/Codes/Details/304942009 +xref: MA:0001021 +xref: MBA:931 +xref: Pontine:nuclei +xref: UMLS:C0228448 {source="BIRNLEX:1516"} +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009662 ! hindbrain nucleus +relationship: part_of UBERON:0002567 ! basal part of pons + +[Term] +id: UBERON:0002152 +name: middle cerebellar peduncle +def: "Regional part of medullary white matter (according to Neuronames) primarily found at the level of the pons, consisting of a very large bundle of fibers originating in the pontine nuclei projecting to the cerebellum (MM)." [BIRNLEX:1529] +subset: pheno_slim +subset: uberon_slim +synonym: "brachium pontis" EXACT [BIRNLEX:1529] +synonym: "brachium pontis (stem of middle cerebellar peduncle)" RELATED [BAMS:bp] +synonym: "crus cerebelli ad pontem" RELATED LATIN [NeuroNames:620] +synonym: "crus ponto-cerebellare" RELATED LATIN [NeuroNames:620] +synonym: "mid-cerebellar peduncle" RELATED [NeuroNames:620] +synonym: "pedunculus cerebellaris medialis" RELATED LATIN [NeuroNames:620] +synonym: "pedunculus cerebellaris medius" RELATED LATIN [http://en.wikipedia.org/wiki/Middle_cerebellar_peduncle] +synonym: "pedunculus cerebellaris pontinus" RELATED LATIN [NeuroNames:620] +xref: BAMS:BP +xref: BAMS:bp +xref: BAMS:mcp +xref: BIRNLEX:1529 +xref: BM:Pons-BP +xref: DHBA:12768 +xref: FMA:72515 +xref: HBA:9294 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=620 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=620 {source="BIRNLEX:1529"} +xref: http://en.wikipedia.org/wiki/Middle_cerebellar_peduncle +xref: http://linkedlifedata.com/resource/umls/id/C0152392 +xref: http://www.snomedbrowser.com/Codes/Details/279219000 +xref: MA:0002745 +xref: MBA:78 +xref: NIFSTD_RETIRED:birnlex_1699 +xref: UMLS:C0152392 {source="BIRNLEX:1529"} +is_a: UBERON:0007416 ! cerebellar peduncle +is_a: UBERON:0019292 ! white matter of pons +relationship: part_of UBERON:0002567 {source="FMA"} ! basal part of pons + +[Term] +id: UBERON:0002153 +name: fastigial nucleus +alt_id: UBERON:0008997 +def: "the most medial of the cerebellar nuclei; it receives its afferent input from Purkinje cells of the flocculonodular lobe and the vermis, and most of its efferent connections travel via the inferior cerebellar peduncle to the vestibular nuclei and to the medullary reticular formation" [ISBN:0-683-40008-8, MP:0009983] +subset: pheno_slim +subset: uberon_slim +synonym: "fasciculosus thalamic nucleus" RELATED [BAMS:Fas] +synonym: "fastigial cerebellar nucleus" RELATED [NeuroNames:690] +synonym: "medial (fastigial) nucleus" EXACT [] +synonym: "medial cerebellar nucleus" EXACT [] +synonym: "medial nucleus of cerebellum" RELATED [NeuroNames:690] +synonym: "nucleus (motorius) tecti cerebelli" RELATED LATIN [NeuroNames:690] +synonym: "nucleus fastigiatus" RELATED LATIN [NeuroNames:690] +synonym: "nucleus fastigii" EXACT [BTO:0003839] +synonym: "nucleus fastigii" RELATED LATIN [http://en.wikipedia.org/wiki/Fastigial_nucleus] +synonym: "nucleus fastigii cerebelli" RELATED LATIN [NeuroNames:690] +synonym: "nucleus fastigius cerebelli" RELATED LATIN [NeuroNames:690] +synonym: "roof nucleus-1" EXACT [] +xref: BAMS:C8M +xref: BAMS:Fas +xref: BAMS:FN +xref: BIRNLEX:1146 +xref: BM:CB-CBM +xref: BTO:0003839 +xref: DHBA:12402 +xref: DMBA:16823 +xref: Fastigial:nucleus +xref: FMA:72537 +xref: HBA:12948 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=690 {source="BIRNLEX:1146"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=690 +xref: http://linkedlifedata.com/resource/umls/id/C0175490 +xref: http://www.snomedbrowser.com/Codes/Details/279224002 +xref: MA:0001009 +xref: MBA:989 +xref: UMLS:C0175490 {source="BIRNLEX:1146"} +xref: VHOG:0001699 +is_a: UBERON:0008995 ! nucleus of cerebellar nuclear complex + +[Term] +id: UBERON:0002154 +name: lateral reticular nucleus +def: "A nucleus of the lateral medullary nuclear complex." [http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +subset: vertebrate_core +synonym: "lateral reticular nuclei" RELATED PLURAL [ZFA:0000535] +synonym: "lateral reticular nucleus (medulla)" EXACT [] +synonym: "nucleus reticularis lateralis medullae oblongatae" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_reticular_nucleus] +xref: BAMS:LRN +xref: BAMS:LRt +xref: BM:LR +xref: EMAPA:35484 +xref: FMA:72574 +xref: HBA:9616 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=727 +xref: http://en.wikipedia.org/wiki/Lateral_reticular_nucleus +xref: MA:0001047 +xref: MBA:235 +xref: NLXANAT:20081246 +xref: TAO:0000535 +xref: ZFA:0000535 +is_a: UBERON:0007635 {source="FMA"} ! nucleus of medulla oblongata +intersection_of: UBERON:0002308 ! nucleus of brain +intersection_of: part_of UBERON:0009775 ! lateral medullary reticular complex +relationship: part_of UBERON:0009775 {source="FMA"} ! lateral medullary reticular complex + +[Term] +id: UBERON:0002155 +name: gigantocellular nucleus +def: "Nucleus located in the rostral ventrolateral medulla. The PGL was originally identified by cytoarchitectural criteria in the human medulla (Olszewski and Baxter, 1954). In humans, the PGL is located in the ventrolateral quadrant of the rostral medullary tegmentum between the nucleus subtrigeminalis caudally, trapezoid body and the superior olive rostrally, nucleus gigantocellularis medially, spinothalamic tract fibers laterally, inferior olive ventrally, and the nucleus ambiguous dorsally (Olszewski and Baxter, 1954). In the rat, the PGL has been further subdivided into retrofacial PGL (caudal to the facial nucleus), and more rostrally located juxtafacial PGL (medial to the facial nucleus), based upon different connectivity." [NLXANAT:1005001] +subset: uberon_slim +synonym: "gigantocellular group" EXACT [HBA:GiRt] +synonym: "gigantocellular reticular nuclei" EXACT [DHBA:GiRt] +synonym: "gigantocellular reticular nucleus" EXACT [] +synonym: "nucleus gigantocellularis" EXACT LATIN [FMA:72576, FMA:TA] +synonym: "nucleus reticularis gigantocellularis" RELATED [NLXANAT:1005001] +xref: BAMS:Gi +xref: BAMS:GRN +xref: DHBA:12625 +xref: EMAPA:35378 +xref: FMA:72576 +xref: Gigantocellular:nucleus +xref: HBA:9597 +xref: HBA:9602 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=730 +xref: MA:0001037 +xref: MBA:1048 +xref: NLXANAT:1005001 +is_a: UBERON:0007635 ! nucleus of medulla oblongata + +[Term] +id: UBERON:0002156 +name: nucleus raphe magnus +def: "The nucleus raphe magnus, located directly rostral to the raphe obscurus, is afferently stimulated from axons in the spinal cord and cerebellum. This makes the magnus a likely candidate for part of the motor system; however, it seems to participate in the endogenous analgesia system. The magnus receives descending afferents from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, parvocellular reticular nucleus and the prelimbic, infralimbic, medial and lateral precentral cortices . All of these brain areas influence the main function of the raphe magnus. The main function of the magnus is mostly pain mediation; in fact it sends projections to the dorsal horn of the spinal cord to directly inhibit pain. The periaquiductal gray, the epicenter of analgesia, sends efferent connections to the nucleus raphe magnus in when it is stimulated by opiates (endogenous or otherwise). Electrical stimulation of the PAG produces analgesia, as well as administration of morphine to the PAG or n.r. magnus. The antinociceptic effects of electrical stimulation of the PAG can be blocked by administering naloxone, an opiate antagonist, to the n.r. magnus. All of this seems to indicate that the magnus is part of the endogenous opiate system, and acts to inhibit pain in the spinal cord. [WP,unvetted]." [http://en.wikipedia.org/wiki/Nucleus_raphe_magnus] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "magnus raphe nucleus" EXACT [] +synonym: "nucleus raphC) magnus" RELATED [BAMS:RM] +synonym: "nucleus raphes magnus" EXACT LATIN [FMA:72584, FMA:TA] +synonym: "nucleus raphes magnus" RELATED LATIN [http://en.wikipedia.org/wiki/Nucleus_raphe_magnus] +synonym: "raphe magnus" RELATED [http://en.wikipedia.org/wiki/Nucleus_raphe_magnus] +synonym: "raphe magnus nucleus" EXACT [BIRNLEX:1363] +synonym: "red nucleus, magnocellular division" RELATED [BAMS:RM] +xref: BAMS:RM +xref: BAMS:RMg +xref: BIRNLEX:1363 +xref: DHBA:12642 +xref: EFO:0002518 +xref: EMAPA:35720 +xref: FMA:72584 +xref: HBA:9643 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=739 {source="BIRNLEX:1363"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=739 +xref: http://en.wikipedia.org/wiki/Nucleus_raphe_magnus +xref: http://linkedlifedata.com/resource/umls/id/C0175515 +xref: MA:0001024 +xref: MBA:206 +xref: UMLS:C0175515 {source="BIRNLEX:1363"} +is_a: UBERON:0007635 ! nucleus of medulla oblongata +relationship: part_of UBERON:0002692 {source="FMA", source="NIF", source="Wikipedia"} ! medullary raphe nuclear complex + +[Term] +id: UBERON:0002157 +name: nucleus raphe pallidus +def: "The nucleus raphe pallidus receives afferent connections from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, and parvocellular reticular nucleus. Also, the pallidus receives afferents from the medial preoptic area, median preoptic nucleus and lateral paragigantocellular reticular nuclei . The pallidus has recently been shown to be involved in the activation of a fever as an immunoreaction. It has been implied that the preoptic area is constantly inhibiting the raphe pallidus, especially the rostral portion, with GABA. When the preoptic area receives immune signals from the body, the inhibition stops and the rostral portion of the raphe pallidus excites the intermediolateral cell column, which induces a fever . The raphe pallidus has also been known to mediate the tachycardia response, an extremely high heart rate known to be incited by emotional or psychological stress. Microinjections of a GABA-a antagonist into the raphe pallidus, induces an increased heart rate. Conversely, microinjections of muscimol, a GABA-a agonist, inhibit tachycardia in rats under air-stress stimuli. In both of these cases, GABA is mediating two different sympathetic responses, so clearly the nucleus raphe pallidus is a far more a complex nucleus than previously thought. [WP,unvetted]." [http://en.wikipedia.org/wiki/Nucleus_raphe_pallidus] +subset: pheno_slim +subset: uberon_slim +synonym: "nucleus raphC) pallidus" RELATED [BAMS:RPA] +synonym: "nucleus raphes pallidus" EXACT LATIN [FMA:72586, FMA:TA] +synonym: "nucleus raphes pallidus" RELATED LATIN [http://en.wikipedia.org/wiki/Nucleus_raphe_pallidus] +synonym: "pallidal raphe nucleus" EXACT [] +synonym: "raphe pallidus nucleus" EXACT [] +xref: BAMS:RPA +xref: BAMS:RPa +xref: BIRNLEX:1375 +xref: DHBA:12644 +xref: EMAPA:35722 +xref: FMA:72586 +xref: HBA:9649 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=741 {source="BIRNLEX:1375"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=741 +xref: http://en.wikipedia.org/wiki/Nucleus_raphe_pallidus +xref: http://linkedlifedata.com/resource/umls/id/C0175517 +xref: MA:0001051 +xref: MBA:230 +xref: UMLS:C0175517 {source="BIRNLEX:1375"} +is_a: UBERON:0007635 ! nucleus of medulla oblongata +relationship: part_of UBERON:0002692 {source="FMA"} ! medullary raphe nuclear complex + +[Term] +id: UBERON:0002158 +name: principal inferior olivary nucleus +def: "The inferior olivary nucleus that consists of the major laminar structure." [http://en.wikipedia.org/wiki/Olivary_body#Olivary_nuclei] +synonym: "chief inferior olivary nucleus" EXACT [] +synonym: "convoluted olive" EXACT [NLXANAT:20081248] +synonym: "inferior olivary complex principal olive" RELATED [BAMS:IOpr] +synonym: "inferior olivary complex, principal olive" EXACT [] +synonym: "inferior olive principal nucleus" EXACT [] +synonym: "inferior olive, principal nucleus" EXACT [] +synonym: "main olivary nucleus" EXACT [] +synonym: "nucleus olivaris principalis" EXACT LATIN [FMA:72592, FMA:TA] +synonym: "principal nucleus of inferior olive" EXACT [] +synonym: "principal olivary nucleus" EXACT [] +synonym: "principal olive" EXACT [NLXANAT:20081248] +xref: BAMS:IOPr +xref: BAMS:IOpr +xref: BAMS:PrIO +xref: DHBA:12610 +xref: EMAPA:37615 {source="MA:th"} +xref: FMA:72592 +xref: HBA:9564 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=749 +xref: MA:0001046 +xref: NLXANAT:20081248 +xref: Olivary_nuclei +is_a: UBERON:0007244 ! inferior olivary nucleus + +[Term] +id: UBERON:0002159 +name: medial accessory inferior olivary nucleus +def: "The inferior olivary nucleus that lies between the primary olivary nucleus and the pyramid, and forms a curved lamina, the concavity of which is directed laterally" [http://en.wikipedia.org/wiki/Olivary_body#Olivary_nuclei] +synonym: "inferior olivary complex, medial accessory olive" EXACT [] +synonym: "inferior olive medial nucleus" EXACT [] +synonym: "inferior olive, medial nucleus" EXACT [] +synonym: "medial accessory olivary nucleus" EXACT [] +synonym: "nucleus olivaris accessorius medialis" EXACT LATIN [FMA:72594, FMA:TA] +xref: BAMS:IOM +xref: BAMS:MIO +xref: DHBA:12605 +xref: EMAPA:37614 {source="MA:th"} +xref: FMA:72594 +xref: HBA:9563 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=751 +xref: http://www.snomedbrowser.com/Codes/Details/369069003 +xref: MA:0001045 +xref: Olivary_nuclei +is_a: UBERON:0007244 ! inferior olivary nucleus + +[Term] +id: UBERON:0002160 +name: nucleus prepositus +synonym: "nucleus praepositus" EXACT [BIRNLEX:2652] +synonym: "nucleus praepositus hypoglossi" RELATED LATIN [NeuroNames:758] +synonym: "nucleus prepositus hypoglossi" RELATED LATIN [NeuroNames:758] +synonym: "nucleus prepositus hypoglossus" RELATED [] +synonym: "prepositus hypoglossal nucleus" EXACT [] +synonym: "prepositus nucleus" EXACT [] +synonym: "prepositus nucleus (Marburg)" RELATED [NeuroNames:758] +synonym: "PrP" BROAD ABBREVIATION [BIRNLEX:2652, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:Pr +xref: BAMS:PRP +xref: BAMS:PrP +xref: BIRNLEX:2652 +xref: DHBA:12615 +xref: EMAPA:36622 +xref: FMA:72596 +xref: HBA:9639 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=758 {source="BIRNLEX:2652"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=758 +xref: http://linkedlifedata.com/resource/umls/id/C0152399 +xref: http://linkedlifedata.com/resource/umls/id/C1289505 +xref: http://www.snomedbrowser.com/Codes/Details/369078009 +xref: MA:0001023 +xref: MBA:169 +xref: UMLS:C0152399 {source="BIRNLEX:2652"} +xref: UMLS:C1289505 {source="BIRNLEX:2652"} +is_a: UBERON:0007635 ! nucleus of medulla oblongata +relationship: part_of UBERON:0000988 ! pons + +[Term] +id: UBERON:0002161 +name: gracile nucleus +def: "Nucleus in the caudal medulla that receive projections primarily from ipsilateral dorsal root ganglion cells via the posterior column of the spinal cord" [BIRNLEX:2643] +subset: uberon_slim +synonym: "Goll's nucleus" EXACT [] +synonym: "golls nucleus" EXACT [BIRNLEX:2643] +synonym: "gracile nucleus (Goll)" RELATED [NeuroNames:766] +synonym: "gracile nucleus of the medulla" RELATED [NeuroNames:766] +synonym: "gracile nucleus, general" RELATED [NeuroNames:766] +synonym: "gracile nucleus, principal part" RELATED [BAMS:GR] +synonym: "nucleus gracilis" EXACT [BIRNLEX:2643] +synonym: "nucleus gracilis" RELATED LATIN [http://en.wikipedia.org/wiki/Gracile_nucleus] +xref: BAMS:GR +xref: BAMS:Gr +xref: BIRNLEX:2643 +xref: BM:Me-Gr +xref: DHBA:12592 +xref: EMAPA:37593 {source="MA:th"} +xref: EV:0100280 +xref: FMA:72602 +xref: Gracile:nucleus +xref: HBA:9554 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=766 {source="BIRNLEX:2643"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=766 +xref: http://linkedlifedata.com/resource/umls/id/C0228546 +xref: http://www.snomedbrowser.com/Codes/Details/369071003 +xref: MA:0001038 +xref: MBA:1039 +xref: UMLS:C0228546 {source="BIRNLEX:2643"} +is_a: UBERON:0018238 {source="ABA", source="ISBN:978-1-4615-0037-7", source="WP"} ! dorsal column nucleus + +[Term] +id: UBERON:0002162 +name: area postrema +def: "A small, rounded eminence on each side of the fourth ventricle, which receives nerve fibers from the solitary nucleus , spinal cord, and adjacent areas of the medulla. The area postrema lies outside the blood-brain barrier and its functions include acting as an emetic chemoreceptor." [http://en.wikipedia.org/wiki/Area_postrema, MESH:A08.186.211.132.810.406.286] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "AP" BROAD ABBREVIATION [BIRNLEX:2636, NIFSTD:NeuroNames_abbrevSource] +synonym: "chemoreceptor trigger zone" RELATED [NeuroNames:772] +xref: Area:postrema +xref: BAMS:AP +xref: BIRNLEX:2636 +xref: BTO:0003425 +xref: DHBA:12807 +xref: EMAPA:35143 +xref: FMA:72607 +xref: GAID:591 +xref: HBA:9522 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=772 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=772 {source="BIRNLEX:2636"} +xref: http://linkedlifedata.com/resource/umls/id/C0228530 +xref: http://linkedlifedata.com/resource/umls/id/C1289468 +xref: http://www.snomedbrowser.com/Codes/Details/369039005 +xref: MA:0001034 +xref: MBA:207 +xref: MESH:D031608 +xref: TAO:0005146 +xref: UMLS:C0228530 {source="BIRNLEX:2636"} +xref: UMLS:C1289468 {source="BIRNLEX:2636"} +xref: ZFA:0005146 +is_a: UBERON:0010135 {source="MA"} ! sensory circumventricular organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001896 {source="MA", source="ZFA"} ! medulla oblongata +relationship: part_of UBERON:0002422 ! fourth ventricle + +[Term] +id: UBERON:0002163 +name: inferior cerebellar peduncle +def: "Regional part of medullary white matter (according to Neuronames) primarily found at the level of the open medulla, consisting of a large bundle of fibers projecting to and projecting from the cerebellum. The icp is continuous with the dorsal spinocerebellar tract and also contains a large number of fibers originating in the inferior olivary complex (MM)." [BIRNLEX:1691] +subset: pheno_slim +subset: uberon_slim +synonym: "corpus restiforme" EXACT LATIN [FMA:72615, FMA:TA] +synonym: "crus cerebelli ad medullam oblongatam" RELATED LATIN [NeuroNames:781] +synonym: "crus medullo-cerebellare" RELATED LATIN [NeuroNames:781] +synonym: "inferior cerebellar peduncle (restiform body)" RELATED [BAMS:icp] +synonym: "inferior cerebellar peduncle (Ridley)" RELATED [NeuroNames:781] +synonym: "inferior peduncle" RELATED [http://en.wikipedia.org/wiki/Inferior_cerebellar_peduncle] +synonym: "pedunculus cerebellaris caudalis" RELATED LATIN [NeuroNames:781] +synonym: "pedunculus cerebellaris inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_cerebellar_peduncle] +synonym: "restiform body" EXACT [BIRNLEX:1691] +xref: BAMS:icp +xref: BIRNLEX:1691 +xref: BM:RB +xref: DHBA:12741 +xref: DMBA:17772 +xref: FMA:72615 +xref: HBA:9291 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=781 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=781 {source="BIRNLEX:1691"} +xref: http://en.wikipedia.org/wiki/Inferior_cerebellar_peduncle +xref: http://linkedlifedata.com/resource/umls/id/C0152393 +xref: http://www.snomedbrowser.com/Codes/Details/362418008 +xref: MA:0002744 +xref: MBA:1123 +xref: NIFSTD_RETIRED:birnlex_1645 +xref: UMLS:C0152393 {source="BIRNLEX:1691"} +is_a: UBERON:0007416 ! cerebellar peduncle +is_a: UBERON:0014649 ! white matter of medulla oblongata + +[Term] +id: UBERON:0002164 +name: tectobulbar tract +def: "A long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the optic tectum towards target cells in the premotor reticulospinal system in the hindbrain." [GO:0034429] +subset: vertebrate_core +synonym: "tecto-bulbar tract" EXACT [] +synonym: "tractus tectobulbaris" RELATED LATIN [NeuroNames:811] +xref: BAMS:tb +xref: BIRNLEX:750 +xref: DHBA:12791 +xref: FMA:72645 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=811 {source="BIRNLEX:750"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=811 +xref: http://linkedlifedata.com/resource/umls/id/C0152378 +xref: http://www.snomedbrowser.com/Codes/Details/369265000 +xref: TAO:0000446 +xref: UMLS:C0152378 {source="BIRNLEX:750"} +xref: ZFA:0000446 +is_a: UBERON:0007702 ! tract of brain +relationship: part_of UBERON:0001896 ! medulla oblongata + +[Term] +id: UBERON:0002165 +name: endocardium +alt_id: UBERON:0006225 +def: "The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers[GO]." [GO:0003157] +comment: fixed in GO to reflect FMA. See email to David/Varsha June 18 2010 +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "endocardial lining" EXACT [EMAPA:32686] +synonym: "endocardial tissue" EXACT [EMAPA:17868] +synonym: "heart endocardial tissue" RELATED [VHOG:0000084] +synonym: "heart endocardium" EXACT [] +xref: AAO:0010408 +xref: BTO:0000387 +xref: CALOHA:TS-2075 +xref: EFO:0000821 +xref: EHDAA2:0004153 +xref: EMAPA:17868 +xref: EMAPA:32686 +xref: EV:0100021 +xref: FMA:7280 +xref: GAID:550 +xref: galen:Endocardium +xref: http://en.wikipedia.org/wiki/Endocardium +xref: http://linkedlifedata.com/resource/umls/id/C0014124 +xref: http://www.snomedbrowser.com/Codes/Details/362013006 +xref: MA:0000076 +xref: MAT:0000455 +xref: MESH:D004699 +xref: NCIT:C13004 +xref: OpenCyc:Mx4rsWA75K1cEduAAADggVaqvw +xref: TAO:0001320 +xref: UMLS:C0014124 {source="ncithesaurus:Endocardium"} +xref: VHOG:0000084 +xref: XAO:0000066 +xref: ZFA:0001320 +is_a: UBERON:0002523 ! tunica intima +is_a: UBERON:0005983 ! heart layer +relationship: develops_from UBERON:0007280 ! presumptive endocardium +relationship: has_part UBERON:0005316 ! endocardial endothelium +relationship: immediate_transformation_of UBERON:0007280 {source="Bgee:AN"} ! presumptive endocardium + +[Term] +id: UBERON:0002166 +name: endocardium of atrium +def: "Endocardium that is part of the atrium." [ZFIN:curator] +subset: pheno_slim +subset: vertebrate_core +synonym: "atrial endocardium" EXACT [] +synonym: "atrium endocardial tissue" RELATED [VHOG:0000606] +synonym: "atrium endocardium" EXACT [] +synonym: "atrium of heart endocardium" EXACT [OBOL:automatic] +synonym: "Cardiac atria endocardium" EXACT [OBOL:automatic] +synonym: "cardiac atrium endocardium" EXACT [OBOL:automatic] +synonym: "endocardium of atrium of heart" EXACT [OBOL:automatic] +synonym: "endocardium of Cardiac atria" EXACT [OBOL:automatic] +synonym: "endocardium of cardiac atrium" EXACT [OBOL:automatic] +synonym: "endocardium of heart atrium" EXACT [OBOL:automatic] +synonym: "heart atrium endocardium" EXACT [OBOL:automatic] +xref: EMAPA:32745 +xref: FMA:7284 +xref: http://www.snomedbrowser.com/Codes/Details/192001005 +xref: MA:0000077 +xref: TAO:0002169 +xref: VHOG:0000606 +xref: ZFA:0001614 +is_a: UBERON:0002165 ! endocardium +intersection_of: UBERON:0002165 ! endocardium +intersection_of: part_of UBERON:0002081 ! cardiac atrium +relationship: contributes_to_morphology_of UBERON:0002081 ! cardiac atrium +relationship: part_of UBERON:0002081 ! cardiac atrium + +[Term] +id: UBERON:0002167 +name: right lung +def: "Lung which consists of the right upper lobe, middle lobe and right lower lobe.[FMA]" [FMA:FMA, http://en.wikipedia.org/wiki/Right_lung] +subset: pheno_slim +subset: uberon_slim +xref: EHDAA2:0001730 +xref: EHDAA:4969 +xref: EMAPA:17661 +xref: FMA:7309 +xref: http://linkedlifedata.com/resource/umls/id/C0225706 +xref: http://www.snomedbrowser.com/Codes/Details/361967000 +xref: MA:0000426 +xref: NCIT:C33483 +xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvVjKy5wpEbGdrcN5Y29ycA +xref: Right:lung +xref: UMLS:C0225706 {source="ncithesaurus:Right_Lung"} +xref: VHOG:0000301 +is_a: UBERON:0002048 ! lung +intersection_of: UBERON:0002048 ! lung +intersection_of: in_right_side_of UBERON:0000170 ! pair of lungs +relationship: in_right_side_of UBERON:0000170 ! pair of lungs + +[Term] +id: UBERON:0002168 +name: left lung +def: "Lung which consists of the left upper lobe and left lower lobe.[FMA]" [FMA:FMA, http://en.wikipedia.org/wiki/Left_lung] +subset: pheno_slim +subset: uberon_slim +xref: EHDAA2:0000943 +xref: EHDAA:4947 +xref: EMAPA:17653 +xref: FMA:7310 +xref: http://linkedlifedata.com/resource/umls/id/C0225730 +xref: http://www.snomedbrowser.com/Codes/Details/361982005 +xref: Left:lung +xref: MA:0000425 +xref: NCIT:C32967 +xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvVjKy5wpEbGdrcN5Y29ycA +xref: UMLS:C0225730 {source="ncithesaurus:Left_Lung"} +xref: VHOG:0000618 +is_a: UBERON:0002048 ! lung +intersection_of: UBERON:0002048 ! lung +intersection_of: in_left_side_of UBERON:0000170 ! pair of lungs +relationship: in_left_side_of UBERON:0000170 ! pair of lungs + +[Term] +id: UBERON:0002169 +name: alveolar sac +alt_id: UBERON:0008871 +def: "The small terminal dilation of the alveolar ducts around which the alveoli form pocket-like clusters" [http://en.wikipedia.org/wiki/Alveolar_sac, MP:0010902] +subset: pheno_slim +subset: uberon_slim +synonym: "air sac" RELATED [MP:0010902] +synonym: "pulmonary alveolar sac" EXACT [MP:0010902] +synonym: "sacculus alveolaris" EXACT [FMA:7317] +xref: Alveolar:sac +xref: BTO:0000061 +xref: EMAPA:35119 +xref: FMA:7317 +xref: http://linkedlifedata.com/resource/umls/id/C0225691 +xref: http://www.snomedbrowser.com/Codes/Details/361964007 +xref: MA:0000418 +xref: NCIT:C32057 +xref: OpenCyc:Mx4rwCvh75wpEbGdrcN5Y29ycA +xref: UMLS:C0225691 {source="ncithesaurus:Alveolar_Sac"} +is_a: UBERON:0000115 ! lung epithelium +is_a: UBERON:0000117 ! respiratory tube +is_a: UBERON:0007499 ! epithelial sac +intersection_of: UBERON:0007499 ! epithelial sac +intersection_of: part_of UBERON:0008874 ! pulmonary acinus +relationship: contributes_to_morphology_of UBERON:0008874 ! pulmonary acinus +relationship: part_of UBERON:0006524 {source="MA"} ! alveolar system +relationship: part_of UBERON:0008874 {source="FMA"} ! pulmonary acinus + +[Term] +id: UBERON:0002170 +name: upper lobe of right lung +def: "The lobe of the right lung that is closest to the head." [https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "lobus superior (pulmo dexter)" EXACT LATIN [FMA:7333, FMA:TA] +synonym: "lobus superior pulmonis dextri" EXACT LATIN [FMA:TA] +synonym: "right cranial lobe of lung" EXACT [] +synonym: "right lung cranial lobe" EXACT [MA:0000429] +synonym: "right lung superior lobe" RELATED [MA:0000429] +synonym: "right upper lobe" EXACT [FMA:7333] +synonym: "right upper lobe of lung" EXACT [FMA:7333] +synonym: "superior lobe of right lung" EXACT [FMA:7333] +synonym: "upper lobe of right lung" EXACT [galen:UpperLobeOfRightLung] +xref: EHDAA2:0001747 +xref: EHDAA:4987 +xref: EMAPA:17991 +xref: FMA:7333 +xref: galen:UpperLobeOfRightLung +xref: http://linkedlifedata.com/resource/umls/id/C1261074 +xref: http://www.snomedbrowser.com/Codes/Details/361969002 +xref: MA:0000429 +xref: NCIT:C33023 +xref: UMLS:C1261074 {source="ncithesaurus:Upper_Lobe_of_the_Right_Lung"} +xref: VHOG:0000859 +is_a: UBERON:0006518 ! right lung lobe +is_a: UBERON:0008948 {source="FMA"} ! upper lobe of lung +intersection_of: UBERON:0008948 ! upper lobe of lung +intersection_of: part_of UBERON:0002167 ! right lung +relationship: contributes_to_morphology_of UBERON:0002167 ! right lung + +[Term] +id: UBERON:0002171 +name: lower lobe of right lung +def: "The lobe of the right lung that is furtherst from the head." [https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "inferior lobe of right lung" EXACT [FMA:7337] +synonym: "lobus inferior (pulmo dexter)" EXACT LATIN [FMA:7337, FMA:TA] +synonym: "lobus inferior pulmonis dextri" EXACT LATIN [FMA:7337, FMA:TA] +synonym: "lower lobe of right lung" EXACT [galen:LowerLobeOfRightLung] +synonym: "right caudal lobe of lung" EXACT [] +synonym: "right lower lobe" EXACT [FMA:7337] +synonym: "right lower lobe of lung" EXACT [FMA:7337] +synonym: "right lung caudal lobe" RELATED [MA:0000428] +synonym: "right lung inferior lobe" RELATED [MA:0000428] +xref: EHDAA2:0001740 +xref: EHDAA:4979 +xref: EMAPA:17986 +xref: FMA:7337 +xref: galen:LowerLobeOfRightLung +xref: http://linkedlifedata.com/resource/umls/id/C1261075 +xref: http://www.snomedbrowser.com/Codes/Details/361976007 +xref: MA:0000428 +xref: NCIT:C33022 +xref: UMLS:C1261075 {source="ncithesaurus:Lower_Lobe_of_the_Right_Lung"} +xref: VHOG:0000857 +is_a: UBERON:0006518 ! right lung lobe +is_a: UBERON:0008949 {source="FMA"} ! lower lobe of lung +intersection_of: UBERON:0008949 ! lower lobe of lung +intersection_of: part_of UBERON:0002167 ! right lung +relationship: contributes_to_morphology_of UBERON:0002167 ! right lung + +[Term] +id: UBERON:0002172 +name: alveolar atrium +synonym: "alveolus of lung atrium" EXACT [OBOL:automatic] +synonym: "atrium alveolare" EXACT [] +synonym: "atrium of alveolus" EXACT [] +synonym: "atrium of alveolus of lung" EXACT [OBOL:automatic] +synonym: "atrium of lung alveolus" EXACT [OBOL:automatic] +synonym: "lung alveolus atrium" EXACT [OBOL:automatic] +xref: EMAPA:37390 {source="MA:th"} +xref: FMA:7340 +xref: http://www.snomedbrowser.com/Codes/Details/201806004 +xref: MA:0000419 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: part_of UBERON:0002299 ! alveolus of lung + +[Term] +id: UBERON:0002173 +name: pulmonary alveolar duct +def: "the respiratory conducting tubes distal to the respiratory bronchiole that lead to the alveolar sacs and the alveoli" [ISBN:0-683-40008-8, MGI:cwg, MP:0002271] +subset: pheno_slim +subset: uberon_slim +synonym: "alveolar duct" EXACT [MA:0000417] +synonym: "ductus alveolaris" EXACT LATIN [FMA:7341, FMA:TA] +synonym: "respiratory alveolar duct" EXACT [] +xref: Alveolar:duct +xref: EMAPA:32694 +xref: FMA:7341 +xref: http://linkedlifedata.com/resource/umls/id/C0391892 +xref: MA:0000417 +xref: NCIT:C32056 +xref: OpenCyc:Mx4rvXmfV5wpEbGdrcN5Y29ycA +xref: UMLS:C0391892 {source="ncithesaurus:Alveolar_Duct"} +is_a: UBERON:0000117 ! respiratory tube +relationship: part_of UBERON:0006524 ! alveolar system + +[Term] +id: UBERON:0002174 +name: middle lobe of right lung +def: "In the human, the right lung is divided into three lobes (as opposed to two lobes on the left), superior, middle, and inferior, by two interlobular fissures: [WP,unvetted]." [http://en.wikipedia.org/wiki/Middle_lobe_of_right_lung] +comment: Called 'middle lobe of lung' in FMA +subset: pheno_slim +subset: uberon_slim +synonym: "intermediate lobe of right lung" EXACT [] +synonym: "lobus medius pulmonis dextri" EXACT LATIN [FMA:7383, FMA:TA] +synonym: "middle lobe of lung" BROAD [FMA:7383] +synonym: "right lung middle lobe" EXACT [] +synonym: "right lung, middle lobe" EXACT [] +synonym: "right medial lobe" BROAD [] +synonym: "right medial lobe of lung" EXACT [] +synonym: "right middle lobe" BROAD [] +synonym: "right middle lobe of lung" EXACT [] +xref: EMAPA:17997 +xref: FMA:7383 +xref: galen:MiddleLobeOfRightLung +xref: http://en.wikipedia.org/wiki/Middle_lobe_of_right_lung +xref: http://linkedlifedata.com/resource/umls/id/C0225757 +xref: http://www.snomedbrowser.com/Codes/Details/361973004 +xref: MA:0000430 +xref: NCIT:C12286 +xref: UMLS:C0225757 {source="ncithesaurus:Middle_Lobe_of_the_Right_Lung"} +is_a: UBERON:0006518 ! right lung lobe +is_a: UBERON:0008955 ! middle lobe of lung +intersection_of: UBERON:0008955 ! middle lobe of lung +intersection_of: part_of UBERON:0002167 ! right lung +relationship: contributes_to_morphology_of UBERON:0002167 ! right lung + +[Term] +id: UBERON:0002175 +name: intermediolateral nucleus +def: "The intermediolateral nucleus is a region of gray matter found in Rexed lamina VII of the spinal column. Rexed Lamina VII contains several well defined nuclei including the nucleus dorsalis, the intermediolateral cell column (lateral gray horn), and the sacral autonomic nucleus. It extends from the first thoracic through the third lumbar segment, and contains the autonomic motor neurons that give rise to the preganglionic fibers of the sympathetic system. [WP,unvetted]." [http://en.wikipedia.org/wiki/Intermediolateral_nucleus] +subset: uberon_slim +synonym: "intermediolateral nucleus of spinal cord" EXACT [] +synonym: "nucleus intermediolateralis medullae spinalis" EXACT LATIN [FMA:73915, FMA:TA] +synonym: "nucleus intermediolateralis medullae spinalis" RELATED LATIN [http://en.wikipedia.org/wiki/Intermediolateral_nucleus] +synonym: "spinal cord intermediolateral nucleus" EXACT [] +xref: EMAPA:36565 +xref: FMA:73915 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1667 +xref: Intermediolateral:nucleus +xref: MA:0002753 +is_a: UBERON:0011777 ! nucleus of spinal cord +relationship: part_of UBERON:0016578 ! lamina VII of gray matter of spinal cord + +[Term] +id: UBERON:0002176 +name: lateral cervical nucleus +def: "A diffusely arranged nucleus located in the dorsal portions of the lateral funiculus at about cervical levels C1-C3; synaptic station for the spinocervicothalamic tract." [http://www.medilexicon.com/medicaldictionary.php?t=61506] +xref: BAMS:LatC +xref: BAMS:LCN +xref: DMBA:17691 +xref: EMAPA:37633 {source="MA:th"} +xref: FMA:73921 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1672 +xref: MA:0002755 +is_a: UBERON:0011777 ! nucleus of spinal cord +relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord + +[Term] +id: UBERON:0002177 +name: right main bronchus +def: "The main bronchus on the right side." [http://en.wikipedia.org/wiki/Right_main_bronchus, https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "bronchus principalis dexter" RELATED LATIN [http://en.wikipedia.org/wiki/Right_main_bronchus] +synonym: "right bronchus" RELATED [] +synonym: "right major bronchus" EXACT [] +synonym: "right primary bronchus" EXACT [http://en.wikipedia.org/wiki/Right_main_bronchus] +synonym: "right principal bronchus" EXACT [http://en.wikipedia.org/wiki/Right_main_bronchus] +xref: EMAPA:37365 {source="MA:th"} +xref: FMA:7395 +xref: http://en.wikipedia.org/wiki/Right_main_bronchus +xref: http://linkedlifedata.com/resource/umls/id/C0225608 +xref: http://www.snomedbrowser.com/Codes/Details/361955002 +xref: MA:0001849 +xref: NCIT:C33486 +xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvoIuvJwpEbGdrcN5Y29ycA +xref: UMLS:C0225608 {source="ncithesaurus:Right_Main_Bronchus"} +is_a: UBERON:0002182 ! main bronchus +intersection_of: UBERON:0002182 ! main bronchus +intersection_of: continuous_with UBERON:0006518 ! right lung lobe +relationship: continuous_with UBERON:0006518 ! right lung lobe + +[Term] +id: UBERON:0002178 +name: left main bronchus +def: "The main bronchus on the left side." [http://en.wikipedia.org/wiki/Left_main_bronchus] +subset: pheno_slim +subset: uberon_slim +synonym: "bronchus principalis sinister" RELATED LATIN [http://en.wikipedia.org/wiki/Left_main_bronchus] +synonym: "left bronchus" RELATED [] +synonym: "left major bronchus" EXACT [] +synonym: "left primary bronchus" EXACT [http://en.wikipedia.org/wiki/Left_main_bronchus] +synonym: "left principal bronchus" EXACT [http://en.wikipedia.org/wiki/Left_main_bronchus] +xref: EMAPA:37364 {source="MA:th"} +xref: FMA:7396 +xref: http://en.wikipedia.org/wiki/Left_main_bronchus +xref: http://linkedlifedata.com/resource/umls/id/C0225630 +xref: http://www.snomedbrowser.com/Codes/Details/361959008 +xref: MA:0001843 +xref: NCIT:C32968 +xref: UMLS:C0225630 {source="ncithesaurus:Left_Main_Bronchus"} +is_a: UBERON:0002182 ! main bronchus +intersection_of: UBERON:0002182 ! main bronchus +intersection_of: continuous_with UBERON:0008951 ! left lung lobe +relationship: continuous_with UBERON:0008951 ! left lung lobe + +[Term] +id: UBERON:0002179 +name: lateral funiculus of spinal cord +def: "The lateral mass of fibers on either side of the spinal cord, between the anterolateral and posterolateral sulci." [http://medical-dictionary.thefreedictionary.com/lateral+funiculus] +subset: uberon_slim +subset: vertebrate_core +synonym: "funiculus lateralis medullae spinalis" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_funiculus] +synonym: "lateral funiculi" RELATED PLURAL [ZFA:0000533] +synonym: "lateral funiculus" EXACT [ZFA:0000533] +synonym: "lateral funiculus of spinal cord" EXACT [] +synonym: "lateral white column of spinal cord" EXACT [FMA:74000] +xref: FMA:74000 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1673 +xref: http://www.snomedbrowser.com/Codes/Details/362434006 +xref: Lateral:funiculus +xref: TAO:0000533 +xref: ZFA:0000533 +is_a: UBERON:0006127 ! funiculus of spinal cord + +[Term] +id: UBERON:0002180 +name: ventral funiculus of spinal cord +def: "The white substance of the spinal cord lying on either side between the ventral median fissure and the ventral roots of the spinal nerves." [http://medical-dictionary.thefreedictionary.com/ventral+funiculus] +subset: uberon_slim +subset: vertebrate_core +synonym: "anterior funiculus" EXACT [] +synonym: "anterior funiculus of spinal cord" EXACT [] +synonym: "anterior white column of spinal cord" EXACT [FMA:74003] +synonym: "funiculus anterior medullae spinalis" EXACT LATIN [FMA:74003, FMA:TA] +synonym: "ventral funiculi" RELATED PLURAL [ZFA:0000605] +synonym: "ventral funiculus" EXACT [ZFA:0000605] +synonym: "ventral funiculus of spinal cord" EXACT [] +synonym: "ventral white column of spinal cord" EXACT [FMA:74003] +xref: FMA:74003 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1304 +xref: http://www.snomedbrowser.com/Codes/Details/362429007 +xref: NLX:379 +xref: TAO:0000605 +xref: Ventral:funiculus +xref: ZFA:0000605 +is_a: UBERON:0006127 ! funiculus of spinal cord +disjoint_from: UBERON:0002258 {source="lexical"} ! dorsal funiculus of spinal cord +relationship: in_lateral_side_of UBERON:0002318 {source="FMA-abduced-lr"} ! white matter of spinal cord + +[Term] +id: UBERON:0002181 +name: substantia gelatinosa +def: "Gelatinous-appearing material in the dorsal horn of the spinal cord, consisting chiefly of Golgi type II neurons and some larger nerve cells, corresponding to Rexed lamina II." [http://en.wikipedia.org/wiki/Central_gelatinous_substance_of_spinal_cord_of_Rolando, MESH:A08.186.854.610.800] +subset: uberon_slim +synonym: "central gelatinous substance of spinal cord" EXACT [] +synonym: "gelatinous substance of dorsal horn of spinal cord" EXACT [] +synonym: "gelatinous substance of posterior horn of spinal cord" EXACT [] +synonym: "gelatinous substance of Rolando" EXACT [FMA:74019] +synonym: "lamina II of gray matter of spinal cord" EXACT [FMA:68863] +synonym: "lamina spinalis II" EXACT LATIN [FMA:68863, FMA:TA] +synonym: "rexed lamina II" EXACT [FMA:68863] +synonym: "spinal lamina II" EXACT [FMA:68863] +synonym: "substantia gelatinosa cornu posterioris medullae spinalis" EXACT LATIN [FMA:74019, FMA:TA] +synonym: "substantia gelatinosa of spinal cord dorsal horn" EXACT [BIRNLEX:2674] +synonym: "substantia gelatinosa of spinal cord posterior horn" RELATED [BIRNLEX:2674] +xref: BIRNLEX:2674 +xref: EMAPA:36510 +xref: EV:0100318 +xref: FMA:68863 +xref: FMA:74019 +xref: GAID:701 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1635 +xref: http://en.wikipedia.org/wiki/Central_gelatinous_substance_of_spinal_cord_of_Rolando +xref: http://linkedlifedata.com/resource/umls/id/C0038588 +xref: MA:0001124 +xref: MESH:A08.186.854.610.800 +xref: NCIT:C12641 +xref: UMLS:C0038588 {source="ncithesaurus:Substantia_Gelatinosa"} +is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord +relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord + +[Term] +id: UBERON:0002182 +name: main bronchus +def: "One of two branches of the trachea." [http://en.wikipedia.org/wiki/Main_bronchus] +subset: efo_slim +subset: organ_slim +subset: uberon_slim +synonym: "bronchus principalis" EXACT [FMA:7405] +synonym: "extrapulmonary bronchus" EXACT [ISBN:0123813611] +synonym: "mainstem bronchus" EXACT [] +synonym: "major bronchus" EXACT [] +synonym: "primary bronchus" EXACT [FMA:7405] +synonym: "principal bronchus" EXACT [FMA:7405] +synonym: "proximal bronchus" RELATED [] +xref: EHDAA2:0001044 +xref: EHDAA:3072 +xref: EMAPA:16849 +xref: FMA:7405 +xref: http://linkedlifedata.com/resource/umls/id/C0024496 +xref: http://www.snomedbrowser.com/Codes/Details/245508000 +xref: MA:0000438 +xref: Main:bronchus +xref: NCIT:C12284 +xref: OpenCyc:Mx4rvoIuvJwpEbGdrcN5Y29ycA +xref: UMLS:C0024496 {source="ncithesaurus:Main_Bronchus"} +xref: VHOG:0000370 +is_a: UBERON:0002185 ! bronchus +relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primordium +relationship: distally_connected_to UBERON:0002183 ! lobar bronchus +relationship: proximally_connected_to UBERON:0003126 ! trachea + +[Term] +id: UBERON:0002183 +name: lobar bronchus +def: "The lobar bronchus is the major airway within the respiratory tree that starts by division of the principal bronchi on both sides and ends at the point of its own subdivision into tertiary or segmental bronchi[GO]." [GO:0060482, http://en.wikipedia.org/wiki/Secondary_bronchus] +subset: organ_slim +subset: uberon_slim +synonym: "bronchi lobaris" EXACT LATIN [http://en.wikipedia.org/wiki/Secondary_bronchus] +synonym: "lobar bronchi" RELATED PLURAL [http://en.wikipedia.org/wiki/Secondary_bronchus] +synonym: "secondary bronchi" RELATED PLURAL [http://en.wikipedia.org/wiki/Secondary_bronchus] +synonym: "secondary bronchus" EXACT [FMA:7406, http://en.wikipedia.org/wiki/Secondary_bronchus] +xref: EHDAA:4955 +xref: EHDAA:4963 +xref: EHDAA:4977 +xref: EHDAA:4985 +xref: EHDAA:4993 +xref: EHDAA:8175 +xref: EHDAA:8187 +xref: EHDAA:8203 +xref: EHDAA:8213 +xref: EHDAA:8225 +xref: EMAPA:32696 +xref: FMA:7406 +xref: http://linkedlifedata.com/resource/umls/id/C0225653 +xref: http://www.snomedbrowser.com/Codes/Details/245509008 +xref: MA:0000437 +xref: NCIT:C32998 +xref: OpenCyc:Mx4rwQMLXJwpEbGdrcN5Y29ycA +xref: Secondary:bronchus +xref: UMLS:C0225653 {source="ncithesaurus:Lobar_Bronchus"} +is_a: UBERON:0035767 ! intrapulmonary bronchus +relationship: distally_connected_to UBERON:0002184 ! segmental bronchus +relationship: part_of UBERON:0000101 {source="FMA"} ! lobe of lung + +[Term] +id: UBERON:0002184 +name: segmental bronchus +def: "The tertiary bronchi (also known as the segmental bronchi) arise from the secondary bronchi. The respiratory epithelium lining their lumen is surrounded by a layer of smooth muscle. This layer is composed of two ribbons of smooth muscle that spiral in opposite directions. The smooth muscle layer is surrounded by irregular plates of hyaline cartilage which help maintain the patency of the airway. Each of the tertiary bronchi serves a specific bronchopulmonary segment. There are 10 tertiary bronchi in the right lung, and eight in the left. The tertiary bronchi get smaller and divide into primary bronchioles. [WP,unvetted]." [http://en.wikipedia.org/wiki/Segmental_bronchus] +subset: organ_slim +subset: uberon_slim +synonym: "tertiary bronchus" EXACT [] +xref: EHDAA:7043 +xref: EHDAA:7049 +xref: EHDAA:7058 +xref: EHDAA:7064 +xref: EHDAA:7070 +xref: EMAPA:37739 {source="MA:th"} +xref: FMA:7407 +xref: http://linkedlifedata.com/resource/umls/id/C0444439 +xref: http://www.snomedbrowser.com/Codes/Details/245513001 +xref: MA:0000439 +xref: NCIT:C33526 +xref: OpenCyc:Mx4rwQGFgZwpEbGdrcN5Y29ycA +xref: Segmental:bronchus +xref: UMLS:C0444439 {source="ncithesaurus:Segmental_Bronchus"} +xref: VHOG:0001446 +is_a: UBERON:0035767 ! intrapulmonary bronchus +relationship: part_of UBERON:0000101 {source="FMA"} ! lobe of lung +relationship: proximally_connected_to UBERON:0002183 ! lobar bronchus + +[Term] +id: UBERON:0002185 +name: bronchus +def: "the upper conducting airways of the lung; these airways arise from the terminus of the trachea" [ISBN:0-397-51047-0, MESH:A04.411.125, MGI:cwg, MP:0002264] +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "bronchi" EXACT PLURAL [] +synonym: "bronchial tissue" RELATED [BTO:0001340] +synonym: "bronchial trunk" EXACT [FMA:7409] +xref: BTO:0001340 +xref: CALOHA:TS-1229 +xref: EFO:0000932 +xref: EMAPA:32689 +xref: EV:0100041 +xref: FMA:7409 +xref: GAID:346 +xref: http://en.wikipedia.org/wiki/Bronchus +xref: http://linkedlifedata.com/resource/umls/id/C0006255 +xref: http://www.snomedbrowser.com/Codes/Details/181215002 +xref: MA:0000436 +xref: MAT:0000133 +xref: MESH:D001980 +xref: MIAA:0000133 +xref: NCIT:C12683 +xref: UMLS:C0006255 {source="ncithesaurus:Bronchus"} +xref: VHOG:0000262 +xref: XAO:0000121 +is_a: UBERON:0000117 ! respiratory tube +relationship: located_in UBERON:0002224 ! thoracic cavity +relationship: part_of UBERON:0007196 ! tracheobronchial tree + +[Term] +id: UBERON:0002186 +name: bronchiole +def: "the conducting airway of the lungs found terminal to the bronchi; these structures contain neither cartilage nor mucous-secreting glands; the epithelium of the bronchioles becomes thinner with each branching" [ISBN:0-397-51047-0, MGI:cwg, MP:0002267] +subset: pheno_slim +subset: uberon_slim +synonym: "bronchioli" RELATED PLURAL [] +synonym: "bronchiolus" RELATED [BTO:0002375] +synonym: "lobular bronchiole" EXACT [FMA:7410] +xref: BTO:0002375 +xref: CALOHA:TS-2003 +xref: EHDAA:8171 +xref: EHDAA:8183 +xref: EHDAA:8199 +xref: EHDAA:8221 +xref: EMAPA:32697 +xref: FMA:7410 +xref: http://en.wikipedia.org/wiki/Bronchiole +xref: http://linkedlifedata.com/resource/umls/id/C0006270 +xref: http://www.snomedbrowser.com/Codes/Details/278982001 +xref: MA:0000422 +xref: NCIT:C12684 +xref: OpenCyc:Mx4rvl9iDpwpEbGdrcN5Y29ycA +xref: UMLS:C0006270 {source="ncithesaurus:Bronchiole"} +xref: VHOG:0000675 +is_a: UBERON:0000117 ! respiratory tube +relationship: branching_part_of UBERON:0002185 ! bronchus +relationship: part_of UBERON:0002185 ! bronchus +relationship: part_of UBERON:0010368 {source="ncit"} ! pulmonary lobule + +[Term] +id: UBERON:0002187 +name: terminal bronchiole +def: "the last conducting structure of non-respiratory bronchioles; after this point, the airways have alveoli in their walls" [ISBN:0-397-51047-0, MGI:cwg, MP:0002268] +subset: pheno_slim +subset: uberon_slim +synonym: "bronchioli terminalis" RELATED LATIN [http://en.wikipedia.org/wiki/Terminal_bronchiole] +synonym: "bronchiolus terminalis" EXACT LATIN [] +synonym: "terminal bronchiole tube" RELATED [] +xref: BTO:0003223 +xref: EMAPA:36282 +xref: FMA:7411 +xref: http://linkedlifedata.com/resource/umls/id/C0225666 +xref: http://www.snomedbrowser.com/Codes/Details/278981008 +xref: MA:0000424 +xref: NCIT:C33754 +xref: OpenCyc:Mx4rwS7IU5wpEbGdrcN5Y29ycA +xref: Terminal:bronchiole +xref: UMLS:C0225666 {source="ncithesaurus:Terminal_Bronchiole"} +is_a: UBERON:0002186 ! bronchiole + +[Term] +id: UBERON:0002188 +name: respiratory bronchiole +def: "A bronchiole that is the first segment of the respiratory zone." [http://en.wikipedia.org/wiki/Respiratory_bronchiole, ISBN:0123813611] +subset: pheno_slim +subset: uberon_slim +synonym: "bronchiolus respiratorii" EXACT LATIN [http://en.wikipedia.org/wiki/Respiratory_bronchiole] +synonym: "bronchiolus respiratorius" EXACT LATIN [FMA:7412] +xref: BTO:0003222 +xref: EMAPA:35729 +xref: FMA:7412 +xref: http://linkedlifedata.com/resource/umls/id/C1261270 +xref: http://www.snomedbrowser.com/Codes/Details/128517006 +xref: MA:0000423 +xref: NCIT:C33465 +xref: OpenCyc:Mx4rwS6ki5wpEbGdrcN5Y29ycA +xref: Respiratory:bronchiole +xref: UMLS:C1261270 {source="ncithesaurus:Respiratory_Bronchiole"} +is_a: UBERON:0002186 ! bronchiole +relationship: contributes_to_morphology_of UBERON:0008874 ! pulmonary acinus +relationship: distally_connected_to UBERON:0002173 ! pulmonary alveolar duct +relationship: part_of UBERON:0008874 {source="ISBN:0123813611"} ! pulmonary acinus +relationship: proximally_connected_to UBERON:0002187 ! terminal bronchiole + +[Term] +id: UBERON:0002189 +name: outer cortex of kidney +synonym: "kidney outer cortex" EXACT [MA:0001649] +synonym: "outer renal cortex" EXACT [] +xref: EMAPA:37485 {source="MA:th"} +xref: FMA:74285 +xref: MA:0001649 +is_a: UBERON:0001225 ! cortex of kidney + +[Term] +id: UBERON:0002190 +name: subcutaneous adipose tissue +alt_id: UBERON:0008875 +def: "A portion of adipose tissue that is part of the hypodermis, beneath the dermis." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "fatty layer of subcutaneous tissue" EXACT [FMA:74315] +synonym: "fatty layer of superficial fascia" RELATED [FMA:74315] +synonym: "hypodermis fat layer" EXACT [MP:0011156] +synonym: "panniculus adiposus" BROAD [MP:0011156] +synonym: "panniculus adiposus (tela subcutanea)" EXACT LATIN [FMA:74315, FMA:TA] +synonym: "panniculus adiposus telae subcutaneae" EXACT LATIN [FMA:74315, FMA:TA] +synonym: "subcutaneous fat" RELATED [BTO:0004042] +synonym: "subcutaneous fat layer" EXACT [MP:0011156] +xref: BTO:0004042 +xref: EMAPA:35829 +xref: FMA:74315 +xref: MA:0000473 +is_a: UBERON:0001013 ! adipose tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001013 ! adipose tissue +intersection_of: part_of UBERON:0002072 ! hypodermis +relationship: contributes_to_morphology_of UBERON:0002072 ! hypodermis +relationship: part_of UBERON:0002072 ! hypodermis + +[Term] +id: UBERON:0002191 +name: subiculum +def: "Part of the hippocampal formation that is bounded by the entorhinal cortex and area CA1. It is characterized on the CA1 border by an abrupt widening of the pyramidal cell layer. A molecular layer is present that is continuous with that of CA1, although the stratum radiatum is no longer present. The stratum oriens is also not present. adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 468)" [BIRNLEX:1305] +subset: pheno_slim +subset: uberon_slim +synonym: "gyrus parahippocampalis" RELATED [BTO:0003087] +synonym: "subicular cortex" EXACT [BIRNLEX:1305] +synonym: "subiculum cornu ammonis" RELATED [BTO:0003087] +synonym: "subiculum hippocampi" EXACT [FMA:74414] +xref: BAMS:S +xref: BAMS:SUB +xref: BIRNLEX:1305 +xref: BM:Tel-Cx-SB +xref: BTO:0003087 +xref: DHBA:10301 +xref: DHBA:10302 +xref: DMBA:16163 +xref: EMAPA:35832 +xref: FMA:74414 +xref: HBA:12896 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=188 +xref: http://en.wikipedia.org/wiki/Subiculum +xref: http://linkedlifedata.com/resource/umls/id/C0152316 +xref: http://www.snomedbrowser.com/Codes/Details/369097009 +xref: MA:0000960 +xref: MBA:502 +xref: NCIT:C33648 +xref: PBA:10054 +xref: PBA:128012354 +xref: UMLS:C0152316 {source="ncithesaurus:Subiculum"} +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation + +[Term] +id: UBERON:0002192 +name: ventricular system choroidal fissure +def: "The narrow cleft along the medial wall of the lateral ventricle along the margins of which the choroid plexus is attached; it lies between the upper surface of the thalamus and lateral edge of the fornix in the central part of the ventricle and between the terminal stria and fimbria hippocampi in the inferior horn[ZFA]." [ISBN:0815318960, ZFA:0001075] +subset: vertebrate_core +synonym: "chorioid fissure" RELATED [FMA:74512] +synonym: "chorioidal fissure" RELATED [FMA:74512] +synonym: "choroid fissure" RELATED INCONSISTENT [FMA:74512, TAO:0001075] +synonym: "choroid invagination" RELATED [EHDAA2:0000250] +synonym: "choroidal fissure" RELATED [FMA:74512] +synonym: "choroidal fissure of lateral ventricle" EXACT [FMA:83715] +synonym: "choroidal fissures" RELATED PLURAL [ZFA:0001075] +synonym: "lateral ventricle choroid fissure" EXACT [EHDAA2:0000250] +synonym: "ventricular system choroid fissure" EXACT [VHOG:0001756] +xref: BAMS:chf +xref: BAMS:chfl +xref: DHBA:12094 +xref: EHDAA2:0000250 +xref: EHDAA:7567 +xref: EMAPA:17548 +xref: EMAPA:17768 +xref: FMA:74512 +xref: FMA:83715 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=24 +xref: http://linkedlifedata.com/resource/umls/id/C0262212 +xref: MBA:116 +xref: NCIT:C32311 +xref: TAO:0001075 +xref: UMLS:C0262212 {source="ncithesaurus:Choroidal_Fissure"} +xref: VHOG:0001756 +xref: ZFA:0001075 +is_a: UBERON:0000464 ! anatomical space +disjoint_from: UBERON:0005412 ! optic fissure +relationship: part_of UBERON:0005358 ! ventricle of nervous system + +[Term] +id: UBERON:0002193 +name: hemolymphoid system +def: "Anatomical cluster consisting of the hematopoietic system and the lymphoid system, or its analogs." [http://orcid.org/0000-0002-6601-2165] +synonym: "haemolymphoid system" RELATED [] +synonym: "hematolymphoid system" EXACT [] +synonym: "lymphomyeloid complex" EXACT [] +xref: CALOHA:TS-2018 +xref: EHDAA2:0004615 +xref: EMAPA:18765 +xref: FMA:74562 +xref: MA:0000013 +is_a: UBERON:0000467 {source="MA"} ! anatomical system + +[Term] +id: UBERON:0002194 +name: capsule of lymph node +def: "Capsule surrounding lymph node composed of connective tissue with some plain muscle fibers." [http://en.wikipedia.org/wiki/Lymph_node#Capsule] +subset: uberon_slim +synonym: "capsula nodi lymphoidei" EXACT LATIN [FMA:74604, FMA:TA] +synonym: "lymph node capsule" EXACT [] +xref: EMAPA:35524 +xref: FMA:74604 +xref: http://en.wikipedia.org/wiki/Lymph_node_capsule +xref: http://linkedlifedata.com/resource/umls/id/C0229699 +xref: http://www.snomedbrowser.com/Codes/Details/327532004 +xref: MA:0000739 +xref: NCIT:C33028 +xref: UMLS:C0229699 {source="ncithesaurus:Lymph_Node_Capsule"} +is_a: UBERON:0003893 ! capsule +intersection_of: UBERON:0003893 ! capsule +intersection_of: bounding_layer_of UBERON:0000029 ! lymph node +relationship: bounding_layer_of UBERON:0000029 ! lymph node +relationship: composed_primarily_of UBERON:0002384 ! connective tissue +relationship: part_of UBERON:0000029 ! lymph node + +[Term] +id: UBERON:0002195 +name: trabecula of lymph node +def: "Membranous process coming from capsule of lymph node[WP]." [http://en.wikipedia.org/wiki/Lymph_node_trabeculae] +subset: pheno_slim +synonym: "lymph node trabecula" EXACT [] +synonym: "lymph node trabeculum" EXACT [] +xref: FMA:74605 +xref: http://en.wikipedia.org/wiki/Lymph_node_trabeculae +xref: http://linkedlifedata.com/resource/umls/id/C1184179 +xref: MA:0000746 +xref: NCIT:C33035 +xref: UMLS:C1184179 {source="ncithesaurus:Lymph_Node_Trabecula"} +is_a: UBERON:0000440 ! trabecula +intersection_of: UBERON:0000440 ! trabecula +intersection_of: part_of UBERON:0000029 ! lymph node +relationship: part_of UBERON:0000029 ! lymph node + +[Term] +id: UBERON:0002196 +name: adenohypophysis +def: "The glandular, anterior lobe of the pituitary gland. The anterior pituitary regulates several physiological processes including stress, growth, and reproduction[WP]. The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin[ZFA]." [http://en.wikipedia.org/wiki/Adenohypophysis, ZFIN:curator] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "AHP" BROAD ABBREVIATION [BIRNLEX:1581, NIFSTD:NeuroNames_abbrevSource] +synonym: "anterior hypophysis" EXACT [ZFA:0001282] +synonym: "anterior lobe (hypophysis)" EXACT [] +synonym: "anterior lobe of hypophysis" EXACT [] +synonym: "anterior lobe of pituitary" EXACT [] +synonym: "anterior lobe of pituitary gland" EXACT [] +synonym: "anterior lobe of the pituitary" RELATED [BAMS:APit] +synonym: "anterior pituitary" EXACT [] +synonym: "anterior pituitary gland" RELATED [BTO:0000040] +synonym: "cranial lobe" RELATED [BTO:0000496] +synonym: "lobus anterior" RELATED LATIN [NeuroNames:407] +synonym: "lobus anterior (glandula pituitaria)" EXACT LATIN [FMA:74627, FMA:TA] +synonym: "lobus anterior hypophysis" EXACT LATIN [FMA:74627, FMA:TA] +synonym: "pituitary anterior lobe" RELATED [EMAPA:17514] +synonym: "pituitary gland, anterior lobe" EXACT [] +synonym: "pituitary glandanterior lobe" RELATED [BAMS:AL] +synonym: "rostral lobe" RELATED [BTO:0000496] +xref: AAO:0010540 +xref: BAMS:AHY +xref: BAMS:AL +xref: BAMS:APit +xref: BIRNLEX:1581 +xref: BM:AHy +xref: BTO:0000040 +xref: CALOHA:TS-0794 +xref: EFO:0000230 +xref: EHDAA2:0000109 +xref: EMAPA:17514 +xref: FMA:74627 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=407 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=407 {source="BIRNLEX:1581"} +xref: http://en.wikipedia.org/wiki/Adenohypophysis +xref: http://linkedlifedata.com/resource/umls/id/C0032008 +xref: http://linkedlifedata.com/resource/umls/id/C1280369 +xref: http://www.snomedbrowser.com/Codes/Details/245532007 +xref: MA:0000177 +xref: MESH:A06.407.747.608 +xref: NCIT:C12772 +xref: TAO:0001282 +xref: UMLS:C0032008 {source="BIRNLEX:1581"} +xref: UMLS:C0032008 {source="ncithesaurus:Anterior_Lobe_of_the_Pituitary_Gland"} +xref: UMLS:C1280369 {source="BIRNLEX:1581"} +xref: VHOG:0000141 +xref: ZFA:0001282 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +disjoint_from: UBERON:0002198 {source="lexical"} ! neurohypophysis +relationship: contributes_to_morphology_of UBERON:0000007 ! pituitary gland +relationship: develops_from UBERON:0009122 {source="NCBIBook:NBK53175", source="ZFA"} ! adenohypophyseal placode +relationship: part_of UBERON:0000007 ! pituitary gland + +[Term] +id: UBERON:0002197 +name: median eminence of neurohypophysis +def: "Elevation on the ventral surface of the brain located at the zone of attachment between the hypothalamic floor and the hypophysis (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 2nd ed., 2005, pg. 446)." [BIRNLEX:925] +subset: pheno_slim +subset: uberon_slim +synonym: "eminentia medialis (Shantha)" RELATED LATIN [NeuroNames:402] +synonym: "eminentia mediana" RELATED LATIN [NeuroNames:402] +synonym: "eminentia mediana hypothalami" EXACT LATIN [FMA:74634, FMA:TA] +synonym: "eminentia mediana hypothalami" RELATED LATIN [http://en.wikipedia.org/wiki/Median_eminence] +synonym: "eminentia postinfundibularis" RELATED LATIN [NeuroNames:402] +synonym: "ME" BROAD ABBREVIATION [BIRNLEX:925, NIFSTD:NeuroNames_abbrevSource] +synonym: "medial eminence" RELATED [NeuroNames:402] +synonym: "median eminence" EXACT [] +synonym: "median eminence of hypothalamus" EXACT [] +synonym: "median eminence of posterior lobe of pituitary gland" EXACT [] +synonym: "median eminence of tuber cinereum" EXACT [] +xref: AAO:0010539 +xref: BAMS:ME +xref: BIRNLEX:925 +xref: BM:ME +xref: BTO:0001954 +xref: DHBA:13338 +xref: DMBA:15689 +xref: EHDAA2:0001080 +xref: EHDAA:7540 +xref: EMAPA:17521 +xref: FMA:74634 +xref: GAID:463 +xref: HBA:12916 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=402 {source="BIRNLEX:925"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=402 +xref: http://linkedlifedata.com/resource/umls/id/C0025056 +xref: http://www.snomedbrowser.com/Codes/Details/369121004 +xref: MA:0000859 +xref: MBA:10671 +xref: Median:eminence +xref: MESH:A06.407.747.734.500 +xref: UMLS:C0025056 {source="BIRNLEX:925"} +xref: VHOG:0001179 +is_a: UBERON:0003296 ! gland of diencephalon +is_a: UBERON:0010134 ! secretory circumventricular organ +relationship: part_of UBERON:0002198 ! neurohypophysis + +[Term] +id: UBERON:0002198 +name: neurohypophysis +def: "The posterior part of the pituitary gland that secretes hormones involved in blood pressure regulation such as oxytocin and antidiuretic hormon." [MP:0004164] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "infundibular process" EXACT [FMA:74628] +synonym: "lobus nervosus" RELATED LATIN [NeuroNames:401] +synonym: "lobus nervosus neurohypophysis" EXACT LATIN [FMA:74628, FMA:TA] +synonym: "lobus posterior" RELATED LATIN [NeuroNames:401] +synonym: "lobus posterior (glandula pituitaria)" EXACT LATIN [FMA:74628, FMA:TA] +synonym: "lobus posterior hypophysis" EXACT LATIN [FMA:74628, FMA:TA] +synonym: "neural lobe" EXACT [FMA:74628] +synonym: "neural lobe of pituitary" EXACT [BIRNLEX:1586] +synonym: "neural lobe of pituitary gland" EXACT [FMA:74628] +synonym: "neuro hypophysis" EXACT [] +synonym: "neurohypophysis" EXACT [] +synonym: "NHP" BROAD ABBREVIATION [BIRNLEX:1586, NIFSTD:NeuroNames_abbrevSource] +synonym: "pituitary gland neural lobe" RELATED [BAMS:NL] +synonym: "pituitary gland, neural lobe" RELATED [NeuroNames:401] +synonym: "pituitary gland, posterior lobe" EXACT [] +synonym: "posterior lobe of hypophysis" RELATED [NeuroNames:401] +synonym: "posterior lobe of pituitary" EXACT [] +synonym: "posterior lobe of pituitary gland" EXACT [FMA:74628] +synonym: "posterior pituitary" EXACT [] +synonym: "posterior pituitary gland" RELATED [BTO:0000937] +xref: AAO:0010537 +xref: BAMS:NHP +xref: BAMS:NHY +xref: BAMS:NL +xref: BAMS:PPit +xref: BIRNLEX:1586 +xref: BM:NY +xref: BTO:0000937 +xref: CALOHA:TS-0815 +xref: DMBA:15691 +xref: EHDAA2:0001271 +xref: EHDAA:7536 +xref: EMAPA:17519 +xref: FMA:74628 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=401 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=401 {source="BIRNLEX:1586"} +xref: http://en.wikipedia.org/wiki/Neurohypophysis +xref: http://linkedlifedata.com/resource/umls/id/C0032009 +xref: http://linkedlifedata.com/resource/umls/id/C1280368 +xref: http://www.snomedbrowser.com/Codes/Details/245527006 +xref: MA:0000178 +xref: MESH:A06.407.747.734 +xref: NCIT:C12773 +xref: TAO:0001271 +xref: UMLS:C0032009 {source="BIRNLEX:1586"} +xref: UMLS:C0032009 {source="ncithesaurus:Posterior_Lobe_of_the_Pituitary_Gland"} +xref: UMLS:C1280368 {source="BIRNLEX:1586"} +xref: VHOG:0000142 +xref: ZFA:0001271 +is_a: UBERON:0003296 ! gland of diencephalon +is_a: UBERON:0010134 {source="MA"} ! secretory circumventricular organ +relationship: develops_from UBERON:0002346 ! neurectoderm +relationship: part_of UBERON:0000007 {source="ZFA"} ! pituitary gland +relationship: present_in_taxon NCBITaxon:117569 {source="Ariens, p. 1192"} + +[Term] +id: UBERON:0002199 +name: integument +def: "The dermis, epidermis and hypodermis." [http://en.wikipedia.org/wiki/Integument] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "dermal system" RELATED [BTO:0000634] +synonym: "dermis plus epidermis plus hypodermis" EXACT [] +synonym: "dermoid system" RELATED [BTO:0000634] +synonym: "Hautsystem@de" RELATED [BTO:0000634] +synonym: "integumentum commune" EXACT LATIN [FMA:74657, FMA:TA] +synonym: "skin" RELATED [] +synonym: "skin and subcutaneous tissue" EXACT [] +synonym: "skin plus hypodermis" EXACT [] +synonym: "tegument" RELATED [BTO:0000634] +synonym: "the integument" EXACT [FMA:74657] +synonym: "vertebrate integument" RELATED [] +xref: AAO:0000239 +xref: BTO:0000634 +xref: EMAPA:37504 {source="MA:th"} +xref: FMA:74657 +xref: galen:Integument +xref: http://en.wikipedia.org/wiki/Integument +xref: TAO:0000368 +xref: VSAO:0000029 +xref: ZFA:0000368 +is_a: UBERON:0011216 {source="FMA"} ! organ system subdivision +relationship: bounding_layer_of UBERON:0000468 ! multicellular organism +relationship: has_part UBERON:0002072 ! hypodermis +relationship: has_part UBERON:0002097 ! skin of body +relationship: part_of UBERON:0002416 {source="FMA"} ! integumental system + +[Term] +id: UBERON:0002200 +name: vasculature of head +def: "Vasculature that is part of a head [Automatically generated definition]." [OBOL:automatic] +subset: efo_slim +subset: vertebrate_core +synonym: "adult head vascular network" EXACT [OBOL:automatic] +synonym: "adult head vasculature" EXACT [OBOL:automatic] +synonym: "cranial vasculature" EXACT [] +synonym: "head vascular network" EXACT [OBOL:automatic] +synonym: "head vasculature" RELATED [] +synonym: "vascular network of adult head" EXACT [OBOL:automatic] +synonym: "vascular network of head" EXACT [OBOL:automatic] +synonym: "vasculature of adult head" EXACT [OBOL:automatic] +xref: EFO:0003656 +xref: FMA:74710 +xref: TAO:0001267 +xref: XAO:0004152 +xref: ZFA:0001267 +is_a: UBERON:0002049 ! vasculature +intersection_of: UBERON:0002049 ! vasculature +intersection_of: part_of UBERON:0000033 ! head +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0002201 +name: vasculature of trunk +def: "A vasculature that is part of a trunk [Automatically generated definition]." [OBOL:automatic] +subset: vertebrate_core +synonym: "torso vascular network" EXACT [OBOL:automatic] +synonym: "torso vasculature" EXACT [OBOL:automatic] +synonym: "trunk vascular network" EXACT [OBOL:automatic] +synonym: "trunk vasculature" EXACT [] +synonym: "vascular network of torso" EXACT [OBOL:automatic] +synonym: "vascular network of trunk" EXACT [OBOL:automatic] +synonym: "vasculature of torso" EXACT [OBOL:automatic] +xref: FMA:74712 +xref: TAO:0005024 +xref: ZFA:0005024 +is_a: UBERON:0002049 ! vasculature +intersection_of: UBERON:0002049 ! vasculature +intersection_of: part_of UBERON:0002100 ! trunk +relationship: part_of UBERON:0002100 ! trunk + +[Term] +id: UBERON:0002202 +name: submucosa of trachea +def: "A submucosa that is part of a trachea." [OBOL:automatic] +subset: pheno_slim +synonym: "submucosa of windpipe" EXACT [OBOL:automatic] +synonym: "submucous layer of trachea" RELATED [BTO:0002115] +synonym: "trachea submucosa" EXACT [] +synonym: "tracheal submucosa" EXACT [] +synonym: "windpipe submucosa" EXACT [OBOL:automatic] +xref: BTO:0002115 +xref: EMAPA:35879 +xref: FMA:7472 +xref: http://linkedlifedata.com/resource/umls/id/C0225586 +xref: http://www.snomedbrowser.com/Codes/Details/4419000 +xref: MA:0001860 +xref: NCIT:C49307 +xref: UMLS:C0225586 {source="ncithesaurus:Trachea_Submucosa"} +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004777 ! respiratory system submucosa +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0003126 ! trachea +relationship: part_of UBERON:0003126 ! trachea + +[Term] +id: UBERON:0002203 +name: vasculature of eye +def: "Vasculature that is part of the eye region." [https://sourceforge.net/tracker/?func=detail&aid=3489658&group_id=76834&atid=994726, OBOL:automatic] +subset: pheno_slim +subset: vertebrate_core +synonym: "eye vascular network" EXACT [OBOL:automatic] +synonym: "eye vasculature" RELATED [] +synonym: "ocular blood vessel" EXACT [ZFA:0007057] +synonym: "ocular vasculature" EXACT [] +synonym: "optic vasculature" RELATED [] +synonym: "vascular network of eye" EXACT [OBOL:automatic] +xref: FMA:74743 +xref: http://www.snomedbrowser.com/Codes/Details/123846009 +xref: TAO:0007057 +xref: ZFA:0007057 +is_a: UBERON:0002200 ! vasculature of head +is_a: UBERON:0006876 ! vasculature of organ +intersection_of: UBERON:0002049 ! vasculature +intersection_of: part_of UBERON:0000019 ! camera-type eye +relationship: develops_from UBERON:0003314 {source="ISBN:0781772214"} ! eye mesenchyme +relationship: part_of UBERON:0000019 ! camera-type eye + +[Term] +id: UBERON:0002204 +name: musculoskeletal system +def: "Anatomical system that consists of the muscular and skeletal systems." [https://github.com/obophenotype/uberon/issues/77, VSAO:0000031, VSAO:curator] +subset: uberon_slim +synonym: "musculo-skeletal system" EXACT [] +xref: AAO:0010546 +xref: CALOHA:TS-1311 +xref: EMAPA:32714 +xref: EV:0100139 +xref: FMA:7482 +xref: GAID:98 +xref: http://linkedlifedata.com/resource/umls/id/C0026860 +xref: http://www.snomedbrowser.com/Codes/Details/278858007 +xref: MA:0002418 +xref: MESH:D009141 +xref: Musculoskeletal:system +xref: NCIT:C12754 +xref: OpenCyc:Mx4rQRpVNgAKEdyHxgDggVfs8g +xref: UMLS:C0026860 {source="ncithesaurus:Musculoskeletal_System"} +xref: VHOG:0001275 +xref: VSAO:0000031 +xref: XAO:0000168 +is_a: UBERON:0000467 ! anatomical system +disjoint_from: UBERON:0002294 ! biliary system +disjoint_from: UBERON:0002330 ! exocrine system +disjoint_from: UBERON:0002390 ! hematopoietic system +disjoint_from: UBERON:0002405 ! immune system +disjoint_from: UBERON:0002416 ! integumental system +disjoint_from: UBERON:0002423 ! hepatobiliary system +disjoint_from: UBERON:0004456 ! entire sense organ system +property_value: dc-contributor https://github.com/cmungall +relationship: existence_ends_during UBERON:0000066 ! fully formed stage +relationship: has_developmental_contribution_from UBERON:0000926 {notes="check ctenophore"} ! mesoderm +relationship: has_part UBERON:0000383 ! musculature of body +relationship: has_part UBERON:0001434 ! skeletal system + +[Term] +id: UBERON:0002205 +name: manubrium of sternum +def: "The cranial most segment of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[MP,WP]." [http://en.wikipedia.org/wiki/Manubrium, MP:0012668] +comment: May be cartilage in some species. +subset: pheno_slim +subset: uberon_slim +synonym: "manubrium" BROAD [] +synonym: "manubrium of sternum" EXACT [] +synonym: "manubrium sterni" EXACT [EMAPA:18723] +synonym: "sternal manubrium" EXACT [MA:0001332] +synonym: "sternal rostrum" EXACT [] +synonym: "sternum rostrum" EXACT [PHENOSCAPE:ad] +xref: EMAPA:18723 +xref: FMA:7486 +xref: GAID:247 +xref: http://en.wikipedia.org/wiki/Manubrium +xref: http://linkedlifedata.com/resource/umls/id/C1710195 +xref: http://www.snomedbrowser.com/Codes/Details/182014008 +xref: MA:0001332 +xref: MESH:D008371 +xref: NCIT:C52730 +xref: OpenCyc:Mx4rvXOLAZwpEbGdrcN5Y29ycA +xref: UMLS:C1710195 {source="ncithesaurus:Sternal_Manubrium"} +is_a: UBERON:0005181 ! thoracic segment organ +is_a: UBERON:0010363 {source="ISBN:0073040584"} ! endochondral element +disjoint_from: UBERON:0006722 ! manubrium of malleus +relationship: develops_from UBERON:0011301 ! manubrium sternum pre-cartilage condensation +relationship: part_of UBERON:0000975 ! sternum +relationship: serially_homologous_to UBERON:0002208 {subset="musculoskeletal", source="ISBN:0073040584"} ! sternebra + +[Term] +id: UBERON:0002206 +name: mammillary body +def: "One of two hemispherical bulges on the base of the posterior hypothalamus (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 2nd ed., 2005, pg 455)." [BIRNLEX:865] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "corpora mamillaria" RELATED LATIN [NeuroNames:412] +synonym: "corpora mammillaria" RELATED LATIN [NeuroNames:412] +synonym: "corpus mamillare" EXACT [ZFA:0000334] +synonym: "corpus mamillare" RELATED LATIN [http://en.wikipedia.org/wiki/Mammillary_body] +synonym: "corpus mamillaris" RELATED LATIN [NeuroNames:412] +synonym: "corpus mammillare" RELATED LATIN [NeuroNames:412] +synonym: "mammillary area" RELATED [DMBA:Mam] +synonym: "MMB" BROAD ABBREVIATION [BIRNLEX:865, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:MB +xref: BAMS:MBO +xref: BAMS:mmb +xref: BIRNLEX:865 +xref: DHBA:15546 +xref: DMBA:15723 +xref: EMAPA:35542 +xref: FMA:74877 +xref: GAID:652 +xref: HBA:12909 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=412 {source="BIRNLEX:865"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=412 +xref: http://linkedlifedata.com/resource/umls/id/C0024670 +xref: http://linkedlifedata.com/resource/umls/id/C1305759 +xref: http://www.snomedbrowser.com/Codes/Details/279306001 +xref: MA:0000174 +xref: Mammillary:body +xref: MBA:331 +xref: MESH:A08.186.211.730.385.357.362.500 +xref: NCIT:C33052 +xref: TAO:0000334 +xref: UMLS:C0024670 {source="BIRNLEX:865"} +xref: UMLS:C0024670 {source="ncithesaurus:Mamillary_Body"} +xref: UMLS:C1305759 {source="BIRNLEX:865"} +xref: ZFA:0000334 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: contributes_to_morphology_of UBERON:0001894 ! diencephalon +relationship: part_of UBERON:0002272 {source="ABA"} ! medial zone of hypothalamus +relationship: part_of UBERON:0002770 {source="GO definition"} ! posterior hypothalamic region +relationship: present_in_taxon NCBITaxon:117569 {source="Hardisty, p. 320-1"} + +[Term] +id: UBERON:0002207 +name: xiphoid process +def: "A cartilaginous extension to the distal part of the sternum." [http://en.wikipedia.org/wiki/Xiphoid_process, https://sourceforge.net/tracker/?func=detail&aid=3153001&group_id=76834&atid=1205376] +subset: pheno_slim +subset: uberon_slim +synonym: "metasternum" RELATED [http://en.wikipedia.org/wiki/Xiphoid_process] +synonym: "processus xiphoideus" RELATED LATIN [http://en.wikipedia.org/wiki/Xiphoid_process] +synonym: "processus xiphoideus" RELATED [http://en.wikipedia.org/wiki/Xiphoid_process] +synonym: "xiphisternum" EXACT [http://en.wikipedia.org/wiki/Xiphoid_process] +synonym: "xiphoid" RELATED [http://en.wikipedia.org/wiki/Xiphoid_process] +synonym: "xiphoid process" EXACT [FMA:7488] +synonym: "xiphoid process" RELATED [http://en.wikipedia.org/wiki/Xiphoid_process] +synonym: "xiphoid process of sternum" EXACT [] +synonym: "xiphoideus" RELATED [http://en.wikipedia.org/wiki/Xiphoid_process] +synonym: "xiphosternal junction" RELATED [http://en.wikipedia.org/wiki/Xiphoid_process] +synonym: "xyphoid" RELATED [http://en.wikipedia.org/wiki/Xiphoid_process] +xref: EMAPA:18725 +xref: FMA:7488 +xref: http://linkedlifedata.com/resource/umls/id/C0043356 +xref: http://www.snomedbrowser.com/Codes/Details/272711000 +xref: MA:0001334 +xref: NCIT:C33895 +xref: UMLS:C0043356 {source="ncithesaurus:Xiphoid_Process"} +xref: Xiphoid:process +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0000975 ! sternum +relationship: serially_homologous_to UBERON:0002208 {subset="musculoskeletal", source="ISBN:0073040584"} ! sternebra + +[Term] +id: UBERON:0002208 +name: sternebra +def: "one of the bony segments of the sternum[TFD]." [http://en.wikipedia.org/wiki/Sternebra, http://medical-dictionary.thefreedictionary.com/sternebra] +comment: Note that some definitions state that this a segment of the primordial sternum. +subset: pheno_slim +subset: uberon_slim +synonym: "sternebral bone" RELATED [EMAPA:18724] +xref: EMAPA:18724 +xref: FMA:7489 +xref: http://en.wikipedia.org/wiki/Sternebra +xref: http://www.snomedbrowser.com/Codes/Details/95955004 +xref: MA:0001333 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0003827 ! thoracic segment bone +relationship: develops_from UBERON:0006295 ! sternebral bone pre-cartilage condensation +relationship: part_of UBERON:0000975 {source="MA"} ! sternum + +[Term] +id: UBERON:0002209 +name: fibrous joint +def: "Nonsynovial joint in which the articulating bones or cartilages are connected by ligaments. Examples: sagittal suture, inferior tibiofibular syndesmosis, gomphosis.[FMA]" [FMA:FMA, http://en.wikipedia.org/wiki/Fibrous_joint] +subset: uberon_slim +subset: vertebrate_core +synonym: "articulatio fibrosa" EXACT [] +synonym: "junctura fibrosa" RELATED LATIN [http://en.wikipedia.org/wiki/Fibrous_joint] +xref: AEO:0000178 +xref: EHDAA2:0003178 +xref: EMAPA:35344 +xref: Fibrous:joint +xref: FMA:7492 +xref: http://www.snomedbrowser.com/Codes/Details/37772004 +xref: MA:0000321 +xref: TAO:0005156 +xref: ZFA:0005156 +is_a: UBERON:0011134 {source="FMA"} ! nonsynovial joint + +[Term] +id: UBERON:0002210 +name: syndesmosis +def: "Fibrous joint in which the articulating bones or cartilages of the vertebral column and the limbs as well as articulating ossicles, are connected by skeletal ligaments or membranes. Examples: Intervertebral syndesmosis, inferior tibiofibular joint.[FMA]" [FMA:FMA, http://en.wikipedia.org/wiki/Syndesmosis] +subset: uberon_slim +xref: EMAPA:37465 {source="MA:th"} +xref: FMA:7494 +xref: http://en.wikipedia.org/wiki/Syndesmosis +xref: http://www.snomedbrowser.com/Codes/Details/89358004 +xref: MA:0001500 +is_a: UBERON:0002209 ! fibrous joint +is_a: UBERON:0002213 ! cartilaginous joint + +[Term] +id: UBERON:0002211 +name: nerve root +def: "A continuation of the neuron projection bundle component of a nerve inside, crossing or immediately outside the central nervous system." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/286] +subset: uberon_slim +synonym: "initial segment of nerve" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "radix nervi" EXACT LATIN [] +xref: FMA:5981 +xref: FMA:82524 +xref: http://linkedlifedata.com/resource/umls/id/C0228084 +xref: http://www.snomedbrowser.com/Codes/Details/362295007 +xref: NCIT:C54024 +xref: Nerve:root +xref: NLX:144250 +xref: UMLS:C0228084 {source="ncithesaurus:Nerve_Root"} +is_a: UBERON:0000122 ! neuron projection bundle +relationship: extends_fibers_into UBERON:0001017 ! central nervous system +relationship: extends_fibers_into UBERON:0001021 ! nerve + +[Term] +id: UBERON:0002212 +name: macula of saccule of membranous labyrinth +def: "the oval neuroepithelial sensory receptor in the anterior wall of the saccule; hair cells of the neuroepithelium support the statoconial membrane and have terminal arborizations of vestibular nerve fibers around their bodies" [MGI:anna, MP:0004330] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "macula of membranous labyrinth saccule" EXACT [OBOL:automatic] +synonym: "macula of saccule" EXACT [] +synonym: "macula of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] +synonym: "macula saccule" EXACT [ZFA:0007000] +synonym: "macula sacculi" EXACT LATIN [FMA:74944, FMA:TA] +synonym: "macula sacculi" RELATED LATIN [http://en.wikipedia.org/wiki/Macula_of_saccule] +synonym: "membranous labyrinth saccule macula" EXACT [OBOL:automatic] +synonym: "saccular macula" EXACT [ZFA:0007000] +synonym: "saccular macula of membranous labyrinth" EXACT [] +synonym: "saccular maculs" RELATED [] +synonym: "saccule macula" EXACT [OBOL:automatic] +synonym: "saccule of membranous labyrinth macula" EXACT [OBOL:automatic] +synonym: "sacculus (labyrinthus vestibularis) macula" EXACT [OBOL:automatic] +xref: EMAPA:35534 +xref: FMA:74944 +xref: http://en.wikipedia.org/wiki/Macula_of_saccule +xref: http://linkedlifedata.com/resource/umls/id/C0229468 +xref: http://www.snomedbrowser.com/Codes/Details/362572004 +xref: MA:0001201 +xref: NCIT:C33045 +xref: TAO:0007000 +xref: UMLS:C0229468 {source="ncithesaurus:Macula_of_Saccule"} +xref: XAO:0004136 +xref: ZFA:0007000 +is_a: UBERON:0000054 ! macula +intersection_of: UBERON:0000054 ! macula +intersection_of: part_of UBERON:0001854 ! saccule of membranous labyrinth +relationship: contributes_to_morphology_of UBERON:0001854 ! saccule of membranous labyrinth +relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth + +[Term] +id: UBERON:0002213 +name: cartilaginous joint +def: "Nonsynovial joint in which the articulating bones or cartilages are connected by cartilage. Examples: Spheno-occipital synchondrosis, first sternocostal joint, pubic symphysis.[FMA]" [FMA:FMA, http://en.wikipedia.org/wiki/Cartilaginous_joint] +subset: uberon_slim +subset: vertebrate_core +synonym: "articulatio cartilaginea" EXACT [] +synonym: "junctura cartilaginea" RELATED LATIN [http://en.wikipedia.org/wiki/Cartilaginous_joint] +xref: Cartilaginous:joint +xref: EMAPA:36581 +xref: FMA:7496 +xref: http://www.snomedbrowser.com/Codes/Details/58442004 +xref: MA:0000320 +xref: TAO:0005155 +xref: ZFA:0005155 +is_a: UBERON:0011134 {source="FMA"} ! nonsynovial joint +intersection_of: UBERON:0011134 ! nonsynovial joint +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0002214 +name: macula of utricle of membranous labyrinth +def: "the neuroepithelial sensory receptor in the inferolateral wall of the utricle; hair cells of the neuroepithelium support the statoconial membrane and have terminal arborizations of vestibular nerve fibers around their bodies; normally sensitive to linear acceleration in the longitudinal axis of the body and to gravitational influences" [MGI:anna, MP:0004333] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "macula of membranous labyrinth utricle" EXACT [OBOL:automatic] +synonym: "macula of utricle" EXACT [] +synonym: "macula of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] +synonym: "macula utricle" EXACT [ZFA:0000030] +synonym: "macula utriculi" EXACT LATIN [FMA:74960, FMA:TA] +synonym: "macula utriculi" RELATED LATIN [http://en.wikipedia.org/wiki/Macula_of_utricle] +synonym: "maculae utricle" RELATED PLURAL [ZFA:0000030] +synonym: "membranous labyrinth utricle macula" EXACT [OBOL:automatic] +synonym: "utricle macula" EXACT [OBOL:automatic] +synonym: "utricle of membranous labyrinth macula" EXACT [OBOL:automatic] +synonym: "utricular macula" RELATED [] +synonym: "utriculus (labyrinthus vestibularis) macula" EXACT [OBOL:automatic] +xref: EFO:0003474 +xref: EMAPA:35535 +xref: FMA:74960 +xref: http://en.wikipedia.org/wiki/Macula_of_utricle +xref: http://linkedlifedata.com/resource/umls/id/C0229451 +xref: http://www.snomedbrowser.com/Codes/Details/362568003 +xref: MA:0001203 +xref: NCIT:C33046 +xref: TAO:0000030 +xref: UMLS:C0229451 {source="ncithesaurus:Macula_of_Utricle"} +xref: ZFA:0000030 +is_a: UBERON:0000054 ! macula +intersection_of: UBERON:0000054 ! macula +intersection_of: part_of UBERON:0001853 ! utricle of membranous labyrinth +relationship: contributes_to_morphology_of UBERON:0001853 ! utricle of membranous labyrinth +relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth + +[Term] +id: UBERON:0002215 +name: synchondrosis +def: "Cartilaginous joint in which the articulating bones or cartilages are connected by hyaline cartilage. Examples: spheno-occipital synchondrosis, first sternocostal joint.[FMA]" [FMA:FMA, http://en.wikipedia.org/wiki/Synchondrosis] +subset: pheno_slim +subset: uberon_slim +synonym: "cartilago epiphysialis" EXACT LATIN [FMA:7497, FMA:TA] +synonym: "epiphysial cartilage" RELATED [FMA:7497] +synonym: "primary cartilaginous joint" EXACT [FMA:7497] +xref: EMAPA:35846 +xref: FMA:7497 +xref: http://en.wikipedia.org/wiki/Synchondrosis +xref: http://www.snomedbrowser.com/Codes/Details/42903008 +xref: MA:0001501 +is_a: UBERON:0002209 ! fibrous joint +is_a: UBERON:0002213 ! cartilaginous joint +intersection_of: UBERON:0002209 ! fibrous joint +intersection_of: composed_primarily_of UBERON:0001994 ! hyaline cartilage tissue +disjoint_from: UBERON:4200215 ! suture +relationship: composed_primarily_of UBERON:0001994 ! hyaline cartilage tissue + +[Term] +id: UBERON:0002216 +name: symphysis +def: "Cartilaginous joint in which the articulating bones or cartilages are connected by fibrocartilage. Examples: pubic symphysis, intervertebral symphysis, manubriosternal joint.[FMA]" [FMA:FMA, http://en.wikipedia.org/wiki/Symphysis] +subset: uberon_slim +synonym: "secondary cartilaginous joint" EXACT [FMA:7498] +xref: EMAPA:37758 {source="MA:th"} +xref: FMA:7498 +xref: http://en.wikipedia.org/wiki/Symphysis +xref: http://www.snomedbrowser.com/Codes/Details/1584001 +xref: MA:0001504 +is_a: UBERON:0002209 {source="MA"} ! fibrous joint +is_a: UBERON:0002213 {source="FMA"} ! cartilaginous joint + +[Term] +id: UBERON:0002217 +name: synovial joint +def: "Joint in which the articulating bones or cartilages are connected by an articular capsule which encloses a synovial membrane and a synovial cavity. Examples: Temporomandibular joint, knee joint.[FMA]" [FMA:7501, http://en.wikipedia.org/wiki/Synovial_joint] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "articulatio synoviale" EXACT [] +synonym: "diarthrodial joints" RELATED PLURAL [ZFA:0005153] +synonym: "diarthroses" EXACT PLURAL [ZFA:0005153] +synonym: "diarthrosis" EXACT [] +synonym: "diarthrosis joint" EXACT [] +xref: AEO:0000183 +xref: CALOHA:TS-2138 +xref: EHDAA2:0003183 +xref: FMA:7501 +xref: galen:SynovialJoint +xref: http://www.snomedbrowser.com/Codes/Details/113234001 +xref: MA:0000322 +xref: NCIT:C32461 +xref: OpenCyc:Mx4rv2bBV5wpEbGdrcN5Y29ycA +xref: Synovial:joint +xref: TAO:0005153 +xref: ZFA:0005153 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: surrounded_by UBERON:0001484 ! articular capsule +disjoint_from: UBERON:0011134 ! nonsynovial joint +relationship: surrounded_by UBERON:0001484 ! articular capsule + +[Term] +id: UBERON:0002218 +name: tympanic ring +def: "A C-shaped membranous bone that provides physical support to the tympanic membrane. The tympanic ring develops sequentially from an initial primordium in the first branchial arch growing in a circumferential fashion around the first pharyngeal cleft into the second branchial arch (Mallo and Gridley, 1996). In most mammals, the tympanic ring exists only during embryonic life, when it coordinates proper development and positioning of the eardrum (see below), and then becomes integrated into the temporal bone[PMID]." [http://www.ncbi.nlm.nih.gov/pubmed/11237469, MP:0000030] +comment: Gene notes: Gsc and Prx1 are essential for tympanic ring development +subset: pheno_slim +synonym: "ectotympanic ring" RELATED [http://en.wikipedia.org/wiki/Ectotympanic_ring] +synonym: "os tympanicum" RELATED [EMAPA:19197] +synonym: "tympanic annulus" RELATED [] +synonym: "tympanic anulus" RELATED [] +synonym: "tympanic membrane annulus" RELATED [] +xref: AAO:0000615 +xref: EMAPA:19197 +xref: http://www.snomedbrowser.com/Codes/Details/95952001 +xref: MA:0001225 +is_a: UBERON:0002514 {source="http://www.ncbi.nlm.nih.gov/pubmed/11237469"} ! intramembranous bone +is_a: UBERON:0003457 ! head bone +relationship: contributes_to_morphology_of UBERON:0001756 ! middle ear +relationship: part_of UBERON:0001756 {source="MA"} ! middle ear + +[Term] +id: UBERON:0002219 +name: subfornical organ +def: "Group of neurons situated on the ventral surface of the fornix at the level of the foramen of Monro in the third ventricle (adapted from Wikipedia via NIF)." [http://en.wikipedia.org/wiki/Subfornical_organ, NLXANAT:100314] +subset: uberon_slim +synonym: "organum subfornicale" RELATED LATIN [http://en.wikipedia.org/wiki/Subfornical_organ] +xref: BAMS:SFO +xref: DHBA:12104 +xref: EMAPA:35830 +xref: FMA:75260 +xref: GAID:795 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=454 +xref: MA:0000940 +xref: MBA:338 +xref: MESH:A08.713.840 +xref: NLXANAT:100314 +xref: Subfornical:organ +is_a: UBERON:0010135 {source="MA"} ! sensory circumventricular organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002663 {source="MA-modified"} ! septal nuclear complex + +[Term] +id: UBERON:0002221 +name: fontanelle +def: "Anatomical structure that is a membranous gap between bones of the skull[TAO]. In humans: Fontanelles are soft spots on a baby's head which, during birth, enable the bony plates of the skull to flex, allowing the child's head to pass through the birth canal. The ossification of the bones of the skull cause the fontanelles to close over by a child's second birthday. The closures eventually form the sutures of the neurocranium. Although there are the two anterior and posterior fontanelles, there are two more fontanelles of interest, the mastoid fontanelle, and the sphenoidal fontanelle[WP]." [http://en.wikipedia.org/wiki/Fontanelle] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "fontanel" EXACT [] +synonym: "fontanelles" EXACT PLURAL [TAO:0001738] +synonym: "fontanels" EXACT PLURAL [TAO:0001738] +synonym: "fonticuli cranii" RELATED LATIN [http://en.wikipedia.org/wiki/Fontanelle] +xref: FMA:75438 +xref: http://en.wikipedia.org/wiki/Fontanelle +xref: http://linkedlifedata.com/resource/umls/id/C0224548 +xref: http://www.snomedbrowser.com/Codes/Details/272681004 +xref: MA:0001465 +xref: NCIT:C32621 +xref: TAO:0001738 +xref: UMLS:C0224548 {source="ncithesaurus:Fontanelle"} +xref: ZFA:0005536 +is_a: UBERON:0007651 {source="FMA"} ! anatomical junction +relationship: adjacent_to UBERON:0003685 ! cranial suture +relationship: part_of UBERON:0001703 {source="MA", source="ZFA"} ! neurocranium + +[Term] +id: UBERON:0002222 +name: perichondrium +def: "Fibrous connective tissue that surrounds cartilage." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, https://github.com/obophenotype/uberon/issues/26, PSPUB:0000170, VSAO:0000036] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "cartilage connective tissue" RELATED [] +synonym: "perichondral region of cartilage" RELATED [] +synonym: "perichondral region of cartilage element" RELATED [] +xref: AAO:0010445 +xref: BTO:0005089 +xref: EMAPA:35676 +xref: FMA:75446 +xref: http://en.wikipedia.org/wiki/Perichondrium +xref: http://www.snomedbrowser.com/Codes/Details/11881003 +xref: MA:0003008 +xref: TAO:0001643 +xref: VSAO:0000036 +xref: XAO:0004049 +xref: ZFA:0001634 +is_a: UBERON:0002384 {source="VSAO"} ! connective tissue +relationship: bounding_layer_of UBERON:0007844 ! cartilage element +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/wdahdul +relationship: part_of UBERON:0007844 ! cartilage element + +[Term] +id: UBERON:0002223 +name: endolymphatic sac +def: "From the posterior wall of the saccule a canal, the ductus endolymphaticus, is given off; this duct is joined by the ductus utriculosaccularis, and then passes along the aquaeductus vestibuli and ends in a blind pouch, the endolymphatic sac, on the posterior surface of the petrous portion of the temporal bone, where it is in contact with the dura mater. Studies suggest that the endolymphatic duct and endolymphatic sac perform both absorptive and secretory, as well as phagocytic and immunodefensive,functions . [WP,unvetted]." [http://en.wikipedia.org/wiki/Endolymphatic_sac] +subset: pheno_slim +subset: uberon_slim +synonym: "saccus endolymphaticus" EXACT [AAO:0000551] +synonym: "saccus endolymphaticus" RELATED LATIN [http://en.wikipedia.org/wiki/Endolymphatic_sac] +xref: AAO:0000551 +xref: EHDAA2:0000441 +xref: EHDAA:7761 +xref: EMAPA:17593 +xref: Endolymphatic:sac +xref: FMA:75639 +xref: GAID:887 +xref: http://www.snomedbrowser.com/Codes/Details/279810008 +xref: MA:0001188 +xref: MESH:D004712 +xref: VHOG:0000791 +is_a: UBERON:0006937 ! inner ear epithelium +is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac +relationship: develops_from UBERON:0006226 {source="EHDAA2"} ! endolymphatic appendage + +[Term] +id: UBERON:0002224 +name: thoracic cavity +def: "The part of the coelemic cavity lumen that is enclosed by the walls of the thorax." [http://en.wikipedia.org/wiki/Thoracic_cavity, UBERON:cjm] +subset: pheno_slim +subset: uberon_slim +synonym: "cavitas thoracis" EXACT LATIN [http://en.wikipedia.org/wiki/Thoracic_cavity] +synonym: "cavity of chest" EXACT [] +synonym: "cavity of thorax" EXACT [] +synonym: "chest cavity" EXACT [] +synonym: "pectoral cavity" EXACT [] +synonym: "space of thoracic compartment" EXACT [FMA:7565] +synonym: "thoracic lumen" EXACT [] +xref: EMAPA:36497 +xref: FMA:7565 +xref: GAID:93 +xref: http://linkedlifedata.com/resource/umls/id/C0230139 +xref: http://www.snomedbrowser.com/Codes/Details/243949006 +xref: MA:0000032 +xref: MESH:A01.911.800 +xref: NCIT:C12905 +xref: OpenCyc:Mx4rmvyleLfEEduAAAACs6hRXg +xref: OpenCyc:Mx4rvhU_TpwpEbGdrcN5Y29ycA +xref: Thoracic:cavity +xref: UMLS:C0230139 {source="ncithesaurus:Thoracic_Cavity"} +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0000915 ! thoracic segment of trunk +intersection_of: part_of UBERON:0002323 ! coelemic cavity lumen +relationship: luminal_space_of UBERON:0000915 ! thoracic segment of trunk +relationship: part_of UBERON:0000915 ! thoracic segment of trunk +relationship: part_of UBERON:0002323 ! coelemic cavity lumen + +[Term] +id: UBERON:0002225 +name: costal arch +def: "The costal margin, sometimes referred to as the costal arch, is the medial margin formed by the false ribs, which in humans is from the eighth rib to the tenth rib." [http://en.wikipedia.org/wiki/Costal_margin] +synonym: "arcus costae" RELATED [http://en.wikipedia.org/wiki/Costal_margin] +synonym: "arcus costalis" RELATED LATIN [http://en.wikipedia.org/wiki/Costal_margin] +synonym: "costal margin" RELATED [http://en.wikipedia.org/wiki/Costal_margin] +synonym: "subcostal arch" RELATED [http://en.wikipedia.org/wiki/Costal_margin] +xref: Costal:margin +xref: EMAPA:37491 {source="MA:th"} +xref: FMA:7569 +xref: FMA:7570 +xref: http://linkedlifedata.com/resource/umls/id/C0230143 +xref: http://www.snomedbrowser.com/Codes/Details/367767002 +xref: MA:0001396 +xref: NCIT:C52715 +xref: UMLS:C0230143 {source="ncithesaurus:Costal_Arch"} +is_a: UBERON:0006800 {source="FMA"} ! anatomical line +relationship: part_of UBERON:0001443 ! chest +relationship: part_of UBERON:0002228 {source="MA"} ! rib + +[Term] +id: UBERON:0002226 +name: basilar membrane of cochlea +def: "A stiff structural element that separates two liquid-filled tubes that run along the coil of the cochlea, the scala media and the scala tympani[WP]." [http://en.wikipedia.org/wiki/Basilar_membrane] +subset: pheno_slim +subset: uberon_slim +synonym: "basilar membrane" EXACT [MA:0001190] +synonym: "lamina basilaris ductus cochlearis" RELATED LATIN [http://en.wikipedia.org/wiki/Basilar_membrane] +xref: Basilar:membrane +xref: BIRNLEX:2521 +xref: EMAPA:35166 +xref: FMA:75706 +xref: GAID:872 +xref: http://linkedlifedata.com/resource/umls/id/C0004816 +xref: http://www.snomedbrowser.com/Codes/Details/362574003 +xref: MA:0001190 +xref: MESH:D001489 +xref: NCIT:C13179 +xref: UMLS:C0004816 {source="BIRNLEX:2521"} +xref: UMLS:C0004816 {source="ncithesaurus:Basilar_Membrane"} +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005764 {source="Wikipedia"} ! acellular membrane +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: adjacent_to UBERON:0001864 ! scala tympani +relationship: adjacent_to UBERON:0002295 ! scala media +relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth + +[Term] +id: UBERON:0002227 +name: spiral organ of cochlea +def: "The organ of Corti (or spiral organ) is the organ in the inner ear of mammals that contains auditory sensory cells, or 'hair cells.' [WP,unvetted]." [http://en.wikipedia.org/wiki/Organ_of_Corti] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "auditory papilla" RELATED SENSU [ISBN:9780387714691] +synonym: "auditory papillae" RELATED PLURAL [ISBN:9780387714691] +synonym: "basilar papilla" RELATED SENSU [XAO:0003145] +synonym: "cochlear spiral organ" EXACT [] +synonym: "Corti's organ" RELATED [BTO:0001691] +synonym: "organ of Corti" RELATED [] +synonym: "organum spirale" EXACT LATIN [http://en.wikipedia.org/wiki/Organ_of_Corti] +synonym: "papilla basilaris" RELATED SENSU [XAO:0003145] +synonym: "spiral organ" EXACT [] +synonym: "spiral organ of Corti" EXACT [] +xref: BIRNLEX:2526 +xref: BTO:0001691 +xref: CALOHA:TS-0717 +xref: EFO:0001364 +xref: EMAPA:19061 +xref: EV:0100364 +xref: FMA:75715 +xref: GAID:772 +xref: http://en.wikipedia.org/wiki/Organ_of_Corti +xref: http://linkedlifedata.com/resource/umls/id/C0029207 +xref: http://www.snomedbrowser.com/Codes/Details/279841009 +xref: MA:0001193 +xref: NCIT:C33223 +xref: ncithesaurus:Spiral_Organ_of_Corti +xref: UMLS:C0029207 {source="ncithesaurus:Organ_of_Corti"} +xref: UMLS:C0029207 {source="BIRNLEX:2526"} +xref: VHOG:0001567 +is_a: UBERON:0000020 ! sense organ +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: dubious_for_taxon NCBITaxon:8292 +relationship: dubious_for_taxon NCBITaxon:8457 +relationship: located_in UBERON:0002295 {source="Scala:media"} ! scala media +relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous labyrinth +relationship: present_in_taxon NCBITaxon:40674 + +[Term] +id: UBERON:0002228 +name: rib +def: "An intersegmental rod-shaped bone that forms in the peritoneal membrane and attach to the vertebral parapophyses." [http://en.wikipedia.org/wiki/Rib, ZFIN:curator] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "dorsal rib" RELATED [] +synonym: "pleural rib" RELATED [] +synonym: "ribs" RELATED PLURAL [TAO:0000538] +xref: AAO:0000545 +xref: CALOHA:TS-2209 +xref: EFO:0003066 +xref: EMAPA:18010 +xref: FMA:7574 +xref: GAID:245 +xref: galen:Rib +xref: http://en.wikipedia.org/wiki/Rib +xref: http://linkedlifedata.com/resource/umls/id/C0035561 +xref: http://www.snomedbrowser.com/Codes/Details/302523002 +xref: MA:0000315 +xref: MESH:D012272 +xref: NCIT:C12782 +xref: OpenCyc:Mx4rvVjNoZwpEbGdrcN5Y29ycA +xref: TAO:0000538 +xref: UMLS:C0035561 {source="ncithesaurus:Rib"} +xref: VHOG:0001154 +xref: ZFA:0000538 +is_a: UBERON:0002495 ! long bone +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0015019 ! rib endochondral element +intersection_of: UBERON:0015019 ! rib endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +disjoint_from: UBERON:0010898 ! gastralium +relationship: develops_from UBERON:0006288 {evidence="definitional"} ! rib cartilage element + +[Term] +id: UBERON:0002229 +name: interparietal bone +def: "The bone of the cranium that lies above and anterior to the occipital bone in some mammals." [http://en.wikipedia.org/wiki/Interparietal_bone, MP:0000077] +subset: pheno_slim +synonym: "inca bone" RELATED [http://en.wikipedia.org/wiki/Interparietal_bone] +synonym: "inter-parietal bone" EXACT [EMAPA:19017] +synonym: "interparietal" EXACT [EHDAA:9530] +synonym: "os interparietale" RELATED [http://en.wikipedia.org/wiki/Interparietal_bone] +synonym: "ossicle of Goethe" RELATED [http://en.wikipedia.org/wiki/Interparietal_bone] +synonym: "post-parietal bone" RELATED [VHOG:0001327] +synonym: "postparietal" RELATED [VHOG:0001327] +synonym: "postparietal bone" RELATED [VHOG:0001327] +xref: EHDAA:9530 +xref: EMAPA:19017 +xref: FMA:75748 +xref: http://www.snomedbrowser.com/Codes/Details/369438005 +xref: Interparietal:bone +xref: MA:0001467 +xref: VHOG:0001327 +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0011164 ! neurocranium bone +relationship: anterior_to UBERON:0001676 ! occipital bone +relationship: contributes_to_morphology_of UBERON:0004339 ! vault of skull +relationship: develops_from UBERON:0006251 {evidence="definitional"} ! interparietal bone primordium +relationship: part_of UBERON:0003113 {notes="vault series", source="ISBN:0073040584"} ! dermatocranium +relationship: part_of UBERON:0004339 {source="http://www.ncbi.nlm.nih.gov/pubmed/11523816"} ! vault of skull + +[Term] +id: UBERON:0002230 +name: head of rib +def: "The head of the rib is the end of a rib closest to the vertebral column, with which it articulates with." [http://en.wikipedia.org/wiki/Head_of_rib, http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "caput costae" RELATED LATIN [http://en.wikipedia.org/wiki/Head_of_rib] +synonym: "rib head" EXACT [] +xref: EMAPA:37735 {source="MA:th"} +xref: FMA:7575 +xref: http://en.wikipedia.org/wiki/Head_of_rib +xref: http://linkedlifedata.com/resource/umls/id/C0222806 +xref: http://www.snomedbrowser.com/Codes/Details/263358001 +xref: MA:0001415 +xref: NCIT:C52727 +xref: UMLS:C0222806 {source="ncithesaurus:Rib_Head"} +is_a: UBERON:0005055 ! zone of long bone +relationship: connected_to UBERON:0002412 ! vertebra +relationship: part_of UBERON:0010388 {source="http://www.ncbi.nlm.nih.gov/pubmed/15906248"} ! proximal segment of rib + +[Term] +id: UBERON:0002231 +name: body of rib +synonym: "corpus costae" EXACT LATIN [FMA:7577, FMA:TA] +synonym: "rib body" EXACT [] +synonym: "rib shaft" EXACT [] +synonym: "shaft of rib" EXACT [] +xref: EMAPA:36014 +xref: FMA:7577 +xref: http://linkedlifedata.com/resource/umls/id/C0448161 +xref: http://www.snomedbrowser.com/Codes/Details/263361000 +xref: MA:0001416 +xref: NCIT:C52728 +xref: UMLS:C0448161 {source="ncithesaurus:Rib_Shaft"} +is_a: UBERON:0005055 ! zone of long bone +relationship: part_of UBERON:0010388 {source="http://www.ncbi.nlm.nih.gov/pubmed/15906248"} ! proximal segment of rib + +[Term] +id: UBERON:0002232 +name: olfactory gland +def: "Bowman's glands (aka olfactory glands, glands of Bowman) are situated in the olfactory mucosa, beneath the olfactory epithelium, in the lamina propria, a connective tissue also containing fibroblasts, blood vessels, and bundles of fine axons from the olfactory neurons. The structure of the Bowman's glands consists of an acinus in the lamina propria and a secretory duct going out through the olfactory epithelium. Electron microscopy studies show that Bowman's glands contain cells with large secretory vesicles. Bowman's glands might secrete proteins such as Lysozyme, amylase and IgA similarly to serous glands. The exact composition of the secretions from Bowman's glands is unclear, but there is evidence that Bowman's glands do not produce odorant binding protein[WP]." [http://en.wikipedia.org/wiki/Olfactory_glands] +subset: organ_slim +subset: pheno_slim +synonym: "Bowman's gland" RELATED [] +synonym: "gland of Bowman" RELATED [] +synonym: "glandulae olfactoriae" RELATED LATIN [http://en.wikipedia.org/wiki/Olfactory_glands] +synonym: "olfactory gland of Bowman" EXACT [] +xref: AAO:0010162 +xref: BTO:0001697 +xref: EMAPA:35613 +xref: FMA:75801 +xref: http://www.snomedbrowser.com/Codes/Details/368891001 +xref: MA:0000287 +xref: Olfactory:glands +is_a: UBERON:0012278 ! gland of nasal mucosa +relationship: part_of UBERON:0000030 ! lamina propria +relationship: part_of UBERON:0005386 ! olfactory segment of nasal mucosa + +[Term] +id: UBERON:0002233 +name: tectorial membrane of cochlea +def: "The overlaying membrane of the cochlear duct, an extracellular matrix of the inner ear that contacts the stereocilia bundles of specialized sensory hair cells; sound induces movement of these hair cells relative to the tectorial membrane, deflects the stereocilia, and leads to fluctuations in hair cell membrane potential, transducing sound into electrical signals[MP,modified]" [J:77634, MGI:anna, MP:0003149] +subset: pheno_slim +subset: uberon_slim +synonym: "tectorial membrane" EXACT [MA:0001199] +synonym: "tectorial membrane of spiral organ of cochlea" EXACT [] +xref: BIRNLEX:2531 +xref: EMAPA:35851 +xref: FMA:75805 +xref: GAID:876 +xref: http://en.wikipedia.org/wiki/Tectorial_membrane_(cochlea) +xref: http://linkedlifedata.com/resource/umls/id/C0039432 +xref: http://linkedlifedata.com/resource/umls/id/C1184928 +xref: http://www.snomedbrowser.com/Codes/Details/368960006 +xref: MA:0001199 +xref: MESH:A09.246.631.246.292.906 +xref: NCIT:C33740 +xref: UMLS:C0039432 {source="ncithesaurus:Tectorial_Membrane"} +xref: UMLS:C1184928 {source="BIRNLEX:2531"} +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005764 {source="Wikipedia"} ! acellular membrane +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: attaches_to UBERON:0002276 {notes="limbal zone"} ! lamina of spiral limbus +relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth + +[Term] +id: UBERON:0002234 +name: proximal phalanx of manus +def: "A proximal phalanx that is part of a finger [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "hand proximal phalanx" EXACT [MA:0001395] +synonym: "phalanx proximalis manus" EXACT LATIN [FMA:75816, FMA:TA] +synonym: "proximal manual phalanx" EXACT [] +synonym: "proximal phalanx of finger" EXACT [FMA:75816] +synonym: "proximal phalanx of fore digit" EXACT [] +synonym: "proximal phalanx of hand" EXACT [] +synonym: "proximal phalanx of manual digit" EXACT [] +xref: EMAPA:37307 {source="MA:th"} +xref: FMA:75816 +xref: http://linkedlifedata.com/resource/umls/id/C0730117 +xref: http://www.snomedbrowser.com/Codes/Details/181986000 +xref: http://www.snomedbrowser.com/Codes/Details/361325003 +xref: MA:0001395 +xref: NCIT:C52786 +xref: UMLS:C0730117 {source="ncithesaurus:Proximal_Phalanx_of_Hand"} +is_a: UBERON:0001436 ! phalanx of manus +is_a: UBERON:0004302 ! proximal phalanx +intersection_of: UBERON:0004302 ! proximal phalanx +intersection_of: part_of UBERON:0002389 ! manual digit +relationship: proximally_connected_to UBERON:0002374 ! metacarpal bone + +[Term] +id: UBERON:0002235 +name: tubercle of rib +def: "The tubercle of a rib is an eminence on the posterior surface, at the junction of the neck and body of the rib, and nearer the lower than the upper border. It consists of an articular and a non-articular portion. The articular portion, the lower and more medial of the two, presents a small, oval surface for articulation with the end of the transverse process of the lower of the two vertebrae to which the head is connected. The non-articular portion is a rough elevation, and affords attachment to the ligament of the tubercle. The tubercle is much more prominent in the upper than in the lower ribs[WP]." [http://en.wikipedia.org/wiki/Tubercle_(rib)] +subset: pheno_slim +subset: uberon_slim +synonym: "rib tubercle" EXACT [] +synonym: "tuberculum costae" EXACT LATIN [FMA:7583, FMA:TA] +xref: EMAPA:37736 {source="MA:th"} +xref: FMA:7583 +xref: http://linkedlifedata.com/resource/umls/id/C0222809 +xref: http://www.snomedbrowser.com/Codes/Details/361104005 +xref: MA:0001417 +xref: NCIT:C52729 +xref: Tubercle:(rib) +xref: UMLS:C0222809 {source="ncithesaurus:Rib_Tubercle"} +is_a: UBERON:0005813 ! tubercle +is_a: UBERON:4100000 ! skeletal element projection +intersection_of: UBERON:0005813 ! tubercle +intersection_of: part_of UBERON:0002231 ! body of rib +disjoint_from: UBERON:0011652 ! dorsal head of rib +relationship: part_of UBERON:0002231 {source="FMA"} ! body of rib + +[Term] +id: UBERON:0002236 +name: costal cartilage +def: "the nonvascular, resilient, flexible hyaline connective tissue that connects the end of a true rib to the sternum or the end of a false rib with the with the lower border of the costal cartilage above it" [ISBN:0-8036-0655-9, MGI:smb, MP:0006432] +subset: pheno_slim +subset: uberon_slim +synonym: "cartilagines costales" RELATED LATIN [http://en.wikipedia.org/wiki/Costal_cartilage] +synonym: "cartilago costalis" RELATED [BTO:0001721] +synonym: "sternal cartilage" RELATED [BTO:0001721] +xref: BTO:0001721 +xref: Costal:cartilage +xref: EMAPA:35262 +xref: FMA:7591 +xref: http://linkedlifedata.com/resource/umls/id/C0222787 +xref: http://www.snomedbrowser.com/Codes/Details/244703004 +xref: MA:0000106 +xref: NCIT:C32391 +xref: OpenCyc:Mx4rwP1g3pwpEbGdrcN5Y29ycA +xref: UMLS:C0222787 {source="ncithesaurus:Costal_Cartilage"} +is_a: UBERON:0007844 ! cartilage element +relationship: part_of UBERON:0002228 ! rib + +[Term] +id: UBERON:0002237 +name: true rib +def: "A rib that is ventrally connected to the sternum." [http://en.wikipedia.org/wiki/True_ribs, ISBN:0073040584] +synonym: "costa vera" EXACT [] +synonym: "costae verae" RELATED PLURAL [http://en.wikipedia.org/wiki/True_ribs] +xref: EMAPA:37774 {source="MA:th"} +xref: FMA:7592 +xref: http://www.snomedbrowser.com/Codes/Details/368044009 +xref: MA:0001419 +xref: OpenCyc:Mx4rv4-iWJwpEbGdrcN5Y29ycA +xref: True:ribs +is_a: UBERON:0002228 ! rib +intersection_of: UBERON:0002228 ! rib +intersection_of: connected_to UBERON:0000975 ! sternum +disjoint_from: UBERON:0002238 ! false rib +relationship: connected_to UBERON:0000975 ! sternum + +[Term] +id: UBERON:0002238 +name: false rib +def: "A rib that is not directly ventrally connected to the sternum." [http://en.wikipedia.org/wiki/False_rib, ISBN:0073040584] +subset: uberon_slim +synonym: "asternal ribs" RELATED [http://en.wikipedia.org/wiki/False_ribs] +synonym: "costa spuria" EXACT [] +synonym: "costae spuriae" RELATED PLURAL [http://en.wikipedia.org/wiki/False_ribs] +xref: EMAPA:37493 {source="MA:th"} +xref: False:rib +xref: FMA:7594 +xref: http://www.snomedbrowser.com/Codes/Details/368045005 +xref: MA:0001398 +xref: OpenCyc:Mx4rwLzzTZwpEbGdrcN5Y29ycA +is_a: UBERON:0002228 ! rib + +[Term] +id: UBERON:0002239 +name: floating rib +def: "A rib that is not connected to sternum or sternal cartilage." [http://en.wikipedia.org/wiki/Floating_rib, ISBN:0073040584] +subset: pheno_slim +subset: uberon_slim +synonym: "costa fluitante" EXACT LATIN [] +synonym: "costae fluctuantes" RELATED LATIN [http://en.wikipedia.org/wiki/Floating_rib] +synonym: "costae fluitantes" RELATED LATIN [http://en.wikipedia.org/wiki/Floating_rib] +synonym: "free rib" EXACT [PHENOSCAPE:Alex] +synonym: "vertebral rib" EXACT [] +xref: EMAPA:37494 {source="MA:th"} +xref: Floating:rib +xref: FMA:7595 +xref: http://www.snomedbrowser.com/Codes/Details/368046006 +xref: MA:0001399 +xref: OpenCyc:Mx4rvaPCWZwpEbGdrcN5Y29ycA +is_a: UBERON:0002238 ! false rib + +[Term] +id: UBERON:0002240 +name: spinal cord +def: "Part of the central nervous system located in the vertebral canal continuous with and caudal to the brain; demarcated from brain by plane of foramen magnum. It is composed of an inner core of gray matter in which nerve cells predominate, and an outer layer of white matter in which myelinated nerve fibers predominate, and surrounds the central canal. (CUMBO)" [BIRNLEX:1709] +subset: cumbo +subset: efo_slim +subset: major_organ +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "cerebro-cerebellar fissure" RELATED [NeuroNames:22] +synonym: "cerebrocerebellar fissure" RELATED [NeuroNames:22] +synonym: "fissura cerebro-cerebellaris" RELATED LATIN [NeuroNames:22] +synonym: "fissura cerebrocerebellaris" RELATED LATIN [NeuroNames:22] +synonym: "medulla spinalis" RELATED [BTO:0001279] +synonym: "medulla spinalis" RELATED LATIN [http://en.wikipedia.org/wiki/Spinal_cord] +synonym: "SpC" RELATED ABBREVIATION [] +synonym: "spinal cord structure" RELATED [ZFA:0000075] +synonym: "spinal medulla" RELATED [BTO:0001279] +xref: AAO:0010151 +xref: BAMS:SP +xref: BAMS:Spinal +xref: BIRNLEX:1709 +xref: BM:SpC +xref: BTO:0001279 +xref: CALOHA:TS-0953 +xref: DHBA:12890 +xref: DMBA:17651 +xref: EFO:0000110 +xref: EHDAA2:0001255 +xref: EHDAA:2863 +xref: EMAPA:17577 +xref: EV:0100316 +xref: FMA:7647 +xref: GAID:695 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=22 {source="BIRNLEX:1709"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=22 +xref: http://linkedlifedata.com/resource/umls/id/C0037925 +xref: http://www.snomedbrowser.com/Codes/Details/180959008 +xref: MA:0000216 +xref: MAT:0000183 +xref: MESH:D013116 +xref: MIAA:0000183 +xref: NCIT:C12464 +xref: OpenCyc:Mx4rvVjjk5wpEbGdrcN5Y29ycA +xref: Spinal:cord +xref: TAO:0000075 +xref: UMLS:C0037925 {source="ncithesaurus:Spinal_Cord"} +xref: UMLS:C0037925 {source="BIRNLEX:1709"} +xref: VHOG:0000601 +xref: XAO:0000020 +xref: ZFA:0000075 +is_a: UBERON:0000489 ! cavitated compound organ +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005174 ! dorsal region element +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0003076 ! posterior neural tube +relationship: develops_from UBERON:0006241 ! future spinal cord +relationship: has_developmental_contribution_from UBERON:0003853 {evidence="definitional"} ! spinal cord neural crest +relationship: immediate_transformation_of UBERON:0006241 {evidence="definitional"} ! future spinal cord +relationship: part_of UBERON:0001017 ! central nervous system + +[Term] +id: UBERON:0002241 +name: chondrocranium +def: "Endoskeletal elements that encase the brain, nose, inner ear[cjm]. that part of the neurocranium formed by endochondral ossification and comprising the bones of the base of the skull[TFD]." [http://en.wikipedia.org/wiki/Chondrocranium, http://medical-dictionary.thefreedictionary.com/chondrocranium] +subset: vertebrate_core +synonym: "calvarium" RELATED [MA:0000317] +synonym: "neurocranium" RELATED INCONSISTENT [MA:0000317] +xref: AAO:0010169 +xref: EHDAA2:0000243 +xref: EMAPA:17681 +xref: http://en.wikipedia.org/wiki/Chondrocranium +xref: TAO:0001424 +xref: VHOG:0000288 +xref: ZFA:0001424 +is_a: UBERON:0011159 ! primary subdivision of cranial skeletal system + +[Term] +id: UBERON:0002242 +name: nucleus pulposus +def: "the jelly-like substance in the middle of the spinal disc which is a remnant of the notochord" [MGI:llw2, MP:0006392] +comment: Function noyes: It functions to distribute hydraulic pressure in all directions within each disc under compressive loads. +subset: pheno_slim +subset: uberon_slim +synonym: "nucleus propulsus" RELATED [http://en.wikipedia.org/wiki/Nucleus_pulposus] +synonym: "nucleus propulsus of intervertebral disk" RELATED [http://en.wikipedia.org/wiki/Nucleus_pulposus] +synonym: "nucleus pulposus (diskus intervertebralis)" EXACT [FMA:13550] +synonym: "nucleus pulposus of intervertebral disk" RELATED [FMA:13550] +synonym: "pulpy nucleus" EXACT [] +xref: BTO:0003626 +xref: EMAPA:18008 +xref: FMA:13550 +xref: FMA:76703 +xref: http://www.snomedbrowser.com/Codes/Details/316586000 +xref: MA:0000112 +xref: Nucleus:pulposus +is_a: UBERON:0002384 ! connective tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: contributes_to_morphology_of UBERON:0001066 ! intervertebral disk +relationship: develops_from UBERON:0002328 {editor="mah", source="ISBN:0073040584", source="Wikipedia"} ! notochord +relationship: has_part UBERON:0011860 ! collection of collagen fibrils +relationship: part_of UBERON:0001066 ! intervertebral disk + +[Term] +id: UBERON:0002243 +name: cutaneous vein +def: "one of a number of veins in the subcutaneous tissue that empty into deep veins" [http://www.thefreedictionary.com/cutaneous+vein] +xref: EMAPA:37506 {source="MA:th"} +xref: FMA:76720 +xref: http://linkedlifedata.com/resource/umls/id/C1185726 +xref: MA:0002098 +xref: NCIT:C53041 +xref: UMLS:C1185726 {source="ncithesaurus:Cutaneous_Vein"} +is_a: UBERON:0001638 ! vein +relationship: part_of UBERON:0002072 ! hypodermis + +[Term] +id: UBERON:0002244 +name: premaxilla +alt_id: UBERON:0002253 +def: "One of the bones of the upper jaw situated between and in front of the maxillae[VHOG]." [http://en.wikipedia.org/wiki/Incisive_bone, http://en.wikipedia.org/wiki/Premaxilla, VHOG:0000426] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "incisive bone" RELATED [http://en.wikipedia.org/wiki/Incisive_bone] +synonym: "os incisivum" RELATED [http://en.wikipedia.org/wiki/Premaxilla] +synonym: "premaxilla bone" RELATED [http://en.wikipedia.org/wiki/Premaxilla] +synonym: "premaxillae" EXACT PLURAL [] +synonym: "premaxillary" EXACT [PHENOSCAPE:ad] +synonym: "premaxillary bone" RELATED [http://en.wikipedia.org/wiki/Premaxilla] +xref: AAO:0000461 +xref: EHDAA:6962 +xref: EHDAA:8033 +xref: EMAPA:17641 +xref: FMA:76869 +xref: FMA:77231 +xref: http://www.snomedbrowser.com/Codes/Details/308884009 +xref: Incisive:bone +xref: MA:0001493 +xref: TAO:0000567 +xref: VHOG:0000426 +xref: ZFA:0000567 +is_a: UBERON:0002514 ! intramembranous bone +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0011597 ! bone of upper jaw +relationship: develops_from UBERON:0011628 ! early premaxilla +relationship: immediate_transformation_of UBERON:0011628 {source="Bgee:AN"} ! early premaxilla +relationship: part_of UBERON:0003113 {source="ISBN:0073040584"} ! dermatocranium + +[Term] +id: UBERON:0002245 +name: cerebellar hemisphere +def: "A paired regions of the cerebellum that lie outside and lateral to the central vermis[MP]. The cerebellum consists of three parts, a median and two lateral, which are continuous with each other, and are substantially the same in structure. The median portion is constricted, and is called the vermis, from its annulated appearance which it owes to the transverse ridges and furrows upon it; the lateral expanded portions are named the hemispheres. The lateral hemisphere is considered the portion of the cerebellum to develop most recently. [WP,unvetted]." [http://en.wikipedia.org/wiki/Cerebellar_hemisphere, MP:0009959] +subset: pheno_slim +subset: uberon_slim +synonym: "cerebellar hemisphere" EXACT [] +synonym: "cerebellar hemispheres" RELATED PLURAL [] +synonym: "cerebellum hemisphere" EXACT [] +synonym: "hemisphere of cerebellum" EXACT [FMA:76925] +synonym: "hemisphere of cerebellum [H II - H X]" EXACT [] +synonym: "hemispherium cerebelli" RELATED LATIN [http://en.wikipedia.org/wiki/Cerebellar_hemisphere] +synonym: "hemispherium cerebelli [H II - H X]" EXACT LATIN [FMA:76925, FMA:TA] +synonym: "hemispherium cerebelli [hII-hX]" EXACT LATIN [FMA:76925, FMA:TA] +xref: BAMS:CH +xref: BIRNLEX:1575 +xref: Cerebellar:hemisphere +xref: DHBA:10659 +xref: DMBA:16920 +xref: EMAPA:35218 +xref: FMA:76925 +xref: HBA:12930 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1214 +xref: http://linkedlifedata.com/resource/umls/id/C0228465 +xref: http://www.snomedbrowser.com/Codes/Details/362411002 +xref: MA:0000200 +xref: MBA:1073 +xref: NCIT:C32726 +xref: UMLS:C0228465 {source="ncithesaurus:Hemisphere_of_the_Cerebellum"} +is_a: UBERON:0002749 ! regional part of cerebellar cortex +is_a: UBERON:0015212 ! lateral structure +relationship: contributes_to_morphology_of UBERON:0002129 ! cerebellar cortex +relationship: in_lateral_side_of UBERON:0002037 ! cerebellum + +[Term] +id: UBERON:0002246 +name: dorsal thoracic nucleus +def: "Two column-shaped nuclear masses formed by large cells. Clarke's nuclei are located in the regions dorsolateral to the central canal in the thoratic and upper lumbar segments." [NLXANAT:20090102] +subset: uberon_slim +synonym: "Clarke's column" EXACT [] +synonym: "Clarke's nuclei" RELATED PLURAL [NLXANAT:20090102] +synonym: "Clarke's nucleus" EXACT [] +synonym: "dorsal nucleus of Clarke" EXACT [FMA:73912] +synonym: "dorsal nucleus of the spinal cord" RELATED [BAMS:DSN] +synonym: "dorsal nucleus of the spinal cord rostral part" RELATED [BAMS:DSN] +synonym: "nucleus thoracicus dorsalis" EXACT LATIN [FMA:77023, FMA:TA] +synonym: "nucleus thoracicus posterior" EXACT LATIN [FMA:77023, FMA:TA] +synonym: "posterior thoracic nucleus" EXACT [] +synonym: "spinal cord dorsal nucleus" EXACT [] +synonym: "Stilling-Clarke's column" EXACT [] +synonym: "Stilling-Clarke's nucleus" EXACT [] +xref: BAMS:DSN +xref: Clarke's:column +xref: EMAPA:37635 {source="MA:th"} +xref: FMA:73912 +xref: FMA:77023 +xref: MA:0001121 +xref: NLXANAT:20090102 +is_a: UBERON:0011777 {source="FMA"} ! nucleus of spinal cord +relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord + +[Term] +id: UBERON:0002247 +name: uterine horn +def: "either one of the pair of tubular extensions from the uterine body where the uterus and the uterine tubes meet; uterine horns are anterior Mullerian duct-derived structures" [MGI:anna, MP:0009085] +subset: pheno_slim +subset: uberon_slim +synonym: "cornu uteri" RELATED [BTO:0004235] +xref: BTO:0004235 +xref: EMAPA:18985 +xref: FMA:77053 +xref: http://www.snomedbrowser.com/Codes/Details/245480007 +xref: MA:0000393 +xref: Uterine:horns +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0015212 ! lateral structure +relationship: connected_to UBERON:0003889 ! fallopian tube +relationship: contributes_to_morphology_of UBERON:0000995 ! uterus +relationship: in_lateral_side_of UBERON:0000995 ! uterus +relationship: part_of UBERON:0000995 {source="MA"} ! uterus + +[Term] +id: UBERON:0002248 +name: transverse pericardial sinus +def: "The passage between the venous and arterial mesocardia -i.e., between the aorta and pulmonary artery in front and the superior vena cava behind. Also, the sinus that forms in the pericardial cavity where the dorso-mesentary pericardium reside.[WP,unvetted]." [http://en.wikipedia.org/wiki/Pericardial_sinus] +subset: uberon_slim +synonym: "Thiele's canal" EXACT [FMA:77132] +synonym: "transverse sinus" BROAD [] +synonym: "transverse sinus of pericardial cavity" EXACT [FMA:77132] +xref: EHDAA2:0002077 +xref: EHDAA:796 +xref: EMAPA:16214 +xref: FMA:77132 +xref: MA:0001880 +xref: Pericardial:sinus +is_a: UBERON:0010279 ! pericardial sinus +relationship: part_of UBERON:0005601 {source="MA"} ! dorsal mesocardium + +[Term] +id: UBERON:0002249 +name: median artery +def: "An artery found in the forearm, between the radial artery and ulnar artery. It runs with the median nerve and supplies the same structures as that nerve. It may be unilateral or bilater" [http://en.wikipedia.org/wiki/Median_artery] +xref: EMAPA:37103 {source="MA:th"} +xref: FMA:77142 +xref: http://linkedlifedata.com/resource/umls/id/C0687034 +xref: MA:0001999 +xref: Median:artery +xref: NCIT:C52970 +xref: UMLS:C0687034 {source="ncithesaurus:Median_Artery"} +is_a: UBERON:0001637 ! artery +is_a: UBERON:0004259 ! lower arm blood vessel + +[Term] +id: UBERON:0002250 +name: popliteal artery +def: "The continuation of the femoral artery coursing through the popliteal fossa; it divides into the anterior and posterior tibial arteries." [MESH:A07.231.114.681] +subset: uberon_slim +synonym: "arteria poplitea" RELATED LATIN [http://en.wikipedia.org/wiki/Popliteal_artery] +xref: EMAPA:37109 {source="MA:th"} +xref: FMA:77155 +xref: GAID:504 +xref: http://linkedlifedata.com/resource/umls/id/C0032649 +xref: http://www.snomedbrowser.com/Codes/Details/181350008 +xref: MA:0002021 +xref: MESH:D011150 +xref: NCIT:C33337 +xref: OpenCyc:Mx4rvduV6pwpEbGdrcN5Y29ycA +xref: Popliteal:artery +xref: UMLS:C0032649 {source="ncithesaurus:Popliteal_Artery"} +is_a: UBERON:0004573 ! systemic artery +relationship: branching_part_of UBERON:0002060 ! femoral artery +relationship: part_of UBERON:0002060 ! femoral artery + +[Term] +id: UBERON:0002251 +name: iliocostalis muscle +def: "The iliocostalis is the muscle immediately lateral to the longissimus that is the nearest to the furrow that separates the epaxial muscles from the hypaxial. It lies very deep to the fleshy portion of the serratus ventralis (serratus anterior). [WP,unvetted]." [http://en.wikipedia.org/wiki/Iliocostalis] +subset: uberon_slim +synonym: "iliocostal muscle" EXACT [] +synonym: "iliocostalis" EXACT [] +synonym: "lateral column of erector spinae" RELATED [] +synonym: "musculus iliocostalis" EXACT LATIN [http://en.wikipedia.org/wiki/Iliocostalis] +xref: EMAPA:37603 {source="MA:th"} +xref: FMA:77177 +xref: http://en.wikipedia.org/wiki/Iliocostalis +xref: http://linkedlifedata.com/resource/umls/id/C0224304 +xref: http://www.snomedbrowser.com/Codes/Details/244854008 +xref: MA:0002319 +xref: NCIT:C32763 +xref: UMLS:C0224304 {source="ncithesaurus:Iliocostal_Muscle"} +is_a: UBERON:0003897 ! axial muscle +is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column +relationship: has_muscle_insertion UBERON:0002228 {notes="Ribs", source="dbpedia"} ! rib +relationship: has_muscle_origin UBERON:0001076 {notes="Sacrum/Illiac Crest/Spinous Processes of lower lumbar/thoracic vertebrae", source="dbpedia"} ! neural spine +relationship: has_muscle_origin UBERON:0003690 {notes="Sacrum/Illiac Crest/Spinous Processes of lower lumbar/thoracic vertebrae", source="dbpedia"} ! fused sacrum +relationship: innervated_by UBERON:0006839 {source="dbpedia"} ! dorsal ramus of spinal nerve +relationship: part_of UBERON:0002462 {source="Wikipedia"} ! erector spinae muscle group + +[Term] +id: UBERON:0002252 +name: splenius +def: "A superficial postvertebral muscle innervated by the posterior ramus of the cervical spinal nerve with origins in the upper thoracic and lower cervical spinous processes whose actions are to extend and ipsilaterally rotate the head and neck. Examples: splenius capitis, splenius cervicis" [http://en.wikipedia.org/wiki/Splenius, http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "splenius muscle" EXACT [] +xref: EMAPA:37701 {source="MA:th"} +xref: FMA:77180 +xref: http://en.wikipedia.org/wiki/Splenius +xref: http://linkedlifedata.com/resource/umls/id/C1185944 +xref: MA:0002382 +xref: NCIT:C53177 +xref: UMLS:C1185944 {source="ncithesaurus:Splenius"} +is_a: UBERON:0002324 ! muscle of back +is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column +relationship: innervated_by UBERON:0006839 ! dorsal ramus of spinal nerve + +[Term] +id: UBERON:0002254 +name: thyroglossal duct +def: "An embryological anatomical structure that forms an open connection between the initial area of development of the thyroid gland and its final position; it is located exactly midline, between the anterior 2/3rds and posterior 1/3rd of the tongue; this duct normally atrophies and closes off as the foramen cecum before birth" [MP:0013235] +subset: pheno_slim +subset: uberon_slim +synonym: "ductus thyroglossalis" RELATED LATIN [http://en.wikipedia.org/wiki/Thyroglossal_duct] +synonym: "ductus thyroglossus" EXACT [http://en.wikipedia.org/wiki/Thyroglossal_duct] +xref: EMAPA:17070 +xref: FMA:77274 +xref: http://linkedlifedata.com/resource/umls/id/C0231104 +xref: http://www.snomedbrowser.com/Codes/Details/308822005 +xref: MA:0000130 +xref: NCIT:C49783 +xref: Thyroglossal:duct +xref: UMLS:C0231104 {source="ncithesaurus:Thyroglossal_Duct"} +xref: VHOG:0000746 +is_a: UBERON:0000025 ! tube +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0006590 {source="FMA"} ! remnant of embryonic structure +relationship: part_of UBERON:0002046 {source="MA", source="VHOG"} ! thyroid gland + +[Term] +id: UBERON:0002255 +name: vomeronasal organ +def: "An organ thought to supplement the olfactory system in receiving pheromonic communication. The sensory part of the organ is in two long, thin sacs, situated on either side of the nasal septum at its base." [VHOG:0000665] +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "Jacobson's organ" EXACT [XAO:0000272] +synonym: "organ of Jacobsen" RELATED [] +synonym: "organon vomeronasale" EXACT LATIN [] +synonym: "organum vomeronasale" EXACT LATIN [http://en.wikipedia.org/wiki/Vomeronasal_organ] +synonym: "VNO" RELATED [VHOG:0000665] +xref: AAO:0000997 +xref: BTO:0002608 +xref: EFO:0001934 +xref: EHDAA2:0002211 +xref: EHDAA:7865 +xref: EMAPA:17612 +xref: FMA:77280 +xref: GAID:354 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1566 +xref: http://www.snomedbrowser.com/Codes/Details/361346007 +xref: MA:0000289 +xref: MESH:A04.531.591.940 +xref: VHOG:0000665 +xref: Vomeronasal:organ +xref: XAO:0000272 +is_a: UBERON:0000020 ! sense organ +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: develops_from UBERON:0003050 {source="Wikipedia"} ! olfactory placode +relationship: has_developmental_contribution_from UBERON:0009714 {source="EHDAA2-abduced"} ! intermaxillary process +relationship: part_of UBERON:0000004 ! nose +relationship: part_of UBERON:0009954 ! vomeronasal system + +[Term] +id: UBERON:0002256 +name: dorsal horn of spinal cord +def: "The pronounced, dorsolaterally oriented ridge of grey matter in each lateral half of the spinal cord[MP]. the dorsal (more towards the back) grey matter of the spinal cord. It receives several types of sensory information from the body, including light touch, proprioception, and vibration. This information is sent from receptors of the skin, bones, and joints through sensory neurons whose cell bodies lie in the dorsal root ganglion[WP]. The dorsal region of the mature spinal cord contains neurons that process and relay sensory input[GO]." [GO:0021516, http://en.wikipedia.org/wiki/Posterior_horn_of_spinal_cord, https://sourceforge.net/tracker/?group_id=36855&atid=440764, MP:0006282] +subset: pheno_slim +subset: vertebrate_core +synonym: "columna grisea posterior medullae spinalis" EXACT LATIN [FMA:256530, FMA:TA] +synonym: "cornu dorsale" EXACT [ZFA:0000649] +synonym: "cornu posterius medullae spinalis" EXACT LATIN [http://en.wikipedia.org/wiki/Posterior_horn_of_spinal_cord] +synonym: "dorsal gray column of spinal cord" EXACT [FMA:256530] +synonym: "dorsal gray horn" EXACT [BIRNLEX:2667] +synonym: "dorsal gray matter of spinal cord" EXACT [FMA:256530] +synonym: "dorsal grey column of spinal cord" EXACT [] +synonym: "dorsal grey horn" BROAD [EMAPA:18574] +synonym: "dorsal horn" BROAD [ZFA:0000649] +synonym: "dorsal horn of the spinal cord" RELATED [BAMS:DH] +synonym: "dorsal horn spinal cord" EXACT [ZFA:0000649] +synonym: "dorsal region of mature spinal cord" BROAD [] +synonym: "dorsal region of spinal cord" BROAD [] +synonym: "dorsal spinal cord" BROAD [] +synonym: "posterior gray column of spinal cord" EXACT [FMA:256530] +synonym: "posterior gray horn of spinal cord" EXACT [FMA:256530] +synonym: "posterior grey column of spinal cord" EXACT [] +synonym: "posterior horn of spinal cord" EXACT [http://en.wikipedia.org/wiki/Posterior_horn_of_spinal_cord] +synonym: "spinal cord dorsal horn" EXACT [] +synonym: "spinal cord dorsal horns" RELATED PLURAL [] +synonym: "spinal cord posterior horn" EXACT [BIRNLEX:2667] +xref: BAMS:DH +xref: BIRNLEX:2667 +xref: BM:SpC-DH +xref: EMAPA:18574 +xref: EMAPA:35790 +xref: FMA:256530 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1686 +xref: http://en.wikipedia.org/wiki/Posterior_horn_of_spinal_cord +xref: http://linkedlifedata.com/resource/umls/id/C0228564 +xref: http://linkedlifedata.com/resource/umls/id/C0228575 +xref: http://www.snomedbrowser.com/Codes/Details/180961004 +xref: MA:0001119 +xref: NCIT:C32473 +xref: TAO:0000649 +xref: UMLS:C0228564 {source="BIRNLEX:2667"} +xref: UMLS:C0228575 {source="ncithesaurus:Dorsal_Horn_of_the_Spinal_Cord"} +xref: VHOG:0001287 +xref: ZFA:0000649 +is_a: UBERON:0016550 ! spinal cord column +disjoint_from: UBERON:0002257 {source="lexical"} ! ventral horn of spinal cord +relationship: contributes_to_morphology_of UBERON:0002315 ! gray matter of spinal cord +relationship: in_lateral_side_of UBERON:0002315 {source="FMA-abduced-lr"} ! gray matter of spinal cord +relationship: part_of UBERON:0002315 ! gray matter of spinal cord + +[Term] +id: UBERON:0002257 +name: ventral horn of spinal cord +def: "The ventral grey column of the spinal cord[MP]. The neurons of the ventral region of the mature spinal cord participate in motor output[GO]." [GO:0021517, http://en.wikipedia.org/wiki/Anterior_horn_of_spinal_cord, https://sourceforge.net/tracker/?group_id=36855&atid=440764, MP:0005112] +subset: pheno_slim +subset: vertebrate_core +synonym: "anterior column" RELATED [http://en.wikipedia.org/wiki/Anterior_horn_of_spinal_cord] +synonym: "anterior column of the spinal cord" RELATED [http://en.wikipedia.org/wiki/Anterior_horn_of_spinal_cord] +synonym: "anterior gray column of spinal cord" EXACT [FMA:256541] +synonym: "anterior gray horn of spinal cord" EXACT [FMA:256541] +synonym: "anterior grey column of spinal cord" EXACT [] +synonym: "anterior horn" EXACT [BIRNLEX:2668] +synonym: "anterior horn (spinal cord)" RELATED [http://en.wikipedia.org/wiki/Anterior_horn_of_spinal_cord] +synonym: "columna grisea anterior medullae spinalis" EXACT LATIN [FMA:256541, FMA:TA] +synonym: "cornu anterius medullae spinalis" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_horn_of_spinal_cord] +synonym: "spinal cord anterior horn" EXACT [BIRNLEX:2668] +synonym: "spinal cord ventral horn" EXACT [] +synonym: "ventral gray column of spinal cord" EXACT [FMA:256541] +synonym: "ventral gray matter of spinal cord" EXACT [FMA:256541] +synonym: "ventral grey column of spinal cord" EXACT [] +synonym: "ventral grey horn" EXACT [BIRNLEX:2668] +synonym: "ventral horn of the spinal cord" RELATED [BAMS:VH] +synonym: "ventral horn spinal cord" EXACT [ZFA:0000702] +synonym: "ventral horns spinal cord" RELATED PLURAL [VHOG:0001288] +synonym: "ventral region of spinal cord" EXACT [] +synonym: "ventral spinal cord" EXACT [] +xref: BAMS:VH +xref: BIRNLEX:2668 +xref: BTO:0005151 +xref: EMAPA:18575 +xref: EMAPA:35794 +xref: FMA:256541 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1751 +xref: http://en.wikipedia.org/wiki/Anterior_horn_of_spinal_cord +xref: http://linkedlifedata.com/resource/umls/id/C0228569 +xref: http://linkedlifedata.com/resource/umls/id/C0228590 +xref: http://www.snomedbrowser.com/Codes/Details/279443000 +xref: MA:0001134 +xref: NCIT:C33859 +xref: TAO:0000702 +xref: UMLS:C0228569 {source="BIRNLEX:2668"} +xref: UMLS:C0228590 {source="ncithesaurus:Ventral_Horn_of_the_Spinal_Cord"} +xref: VHOG:0001288 +xref: ZFA:0000702 +is_a: UBERON:0016550 ! spinal cord column +relationship: contributes_to_morphology_of UBERON:0002315 ! gray matter of spinal cord +relationship: in_lateral_side_of UBERON:0002315 {source="FMA-abduced-lr"} ! gray matter of spinal cord +relationship: part_of UBERON:0002315 ! gray matter of spinal cord + +[Term] +id: UBERON:0002258 +name: dorsal funiculus of spinal cord +def: "the white substance of the spinal cord lying on either side between the posterior median sulcus and the dorsal root." [http://medical-dictionary.thefreedictionary.com/dorsal+funiculus] +subset: uberon_slim +subset: vertebrate_core +synonym: "dorsal funiculus" EXACT [ZFA:0000501] +synonym: "dorsal funiculus of spinal cord" EXACT [] +synonym: "dorsal white column of spinal cord" EXACT [FMA:77461] +synonym: "funiculus dorsalis" EXACT [ZFA:0000501] +synonym: "funiculus posterior medullae spinalis" EXACT LATIN [FMA:77461, FMA:TA] +synonym: "posterior funiculus" EXACT [] +synonym: "posterior funiculus of spinal cord" EXACT [] +synonym: "posterior white column of spinal cord" EXACT [FMA:77461] +xref: Dorsal:funiculus +xref: FMA:77461 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1692 +xref: http://www.snomedbrowser.com/Codes/Details/362432005 +xref: TAO:0000501 +xref: ZFA:0000501 +is_a: UBERON:0006127 ! funiculus of spinal cord +relationship: in_lateral_side_of UBERON:0002318 {source="FMA-abduced-lr"} ! white matter of spinal cord + +[Term] +id: UBERON:0002259 +name: corpora quadrigemina +def: "Either of the two pairs of colliculi on the dorsal surface of the midbrain composed of white matter externally and gray matter within, the superior pair containing correlation centers for optic reflexes and the inferior pair containing correlation centers for auditory reflexes[BTO]." [BTO:0001710, http://en.wikipedia.org/wiki/Corpora_quadrigemina] +subset: pheno_slim +subset: uberon_slim +synonym: "colliculi" EXACT [MP:0000899] +synonym: "corpora quadrigemina" EXACT [] +synonym: "quadrigeminal body" EXACT [] +synonym: "set of colliculi" RELATED [FMA:242157] +xref: BTO:0001710 +xref: Corpora:quadrigemina +xref: DHBA:12375 +xref: EMAPA:36556 +xref: EV:0100244 +xref: FMA:242157 +xref: GAID:574 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1279 +xref: http://linkedlifedata.com/resource/umls/id/C0010087 +xref: http://www.snomedbrowser.com/Codes/Details/361579006 +xref: MA:0002567 +xref: MESH:A08.186.211.132.659.237 +xref: NCIT:C12461 +xref: UMLS:C0010087 {source="ncithesaurus:Corpora_Quadrigemina"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: contributes_to_morphology_of UBERON:0002314 ! midbrain tectum +relationship: develops_from UBERON:0006777 ! tectal plate +relationship: part_of UBERON:0002314 ! midbrain tectum + +[Term] +id: UBERON:0002260 +name: ventral root of spinal cord +def: "The ventral roots contain efferent motor axons. Similar to the dorsal roots, the ventral roots continue out from the spinal column, and meet and mix with their corresponding dorsal nerve root at a point after the ganglion." [NLXANAT:20090209] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "anterior nerve root" RELATED [http://en.wikipedia.org/wiki/Anterior_root_of_spinal_nerve] +synonym: "anterior root" RELATED [http://en.wikipedia.org/wiki/Anterior_root_of_spinal_nerve] +synonym: "anterior root of spinal nerve" RELATED [FMA:5979] +synonym: "anterior spinal root" EXACT [BTO:0000865] +synonym: "motor root of spinal nerve" RELATED [FMA:5979] +synonym: "motor spinal root" RELATED [BTO:0000865] +synonym: "radix anterior (nervus spinalis)" RELATED [FMA:5979] +synonym: "radix anterior nervi spinalis" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_root_of_spinal_nerve] +synonym: "radix motoria (nervus spinalis)" RELATED [FMA:5979] +synonym: "root motoria nervi spinalis" RELATED [BTO:0000865] +synonym: "root ventralis nervi spinalis" RELATED [BTO:0000865] +synonym: "spinal nerve ventral root" RELATED [] +synonym: "ventral root" BROAD [NLXANAT:20090209] +synonym: "ventral root of spinal nerve" RELATED [FMA:5979] +synonym: "ventral roots" RELATED [BAMS:vrt] +synonym: "ventral spinal nerve root" RELATED [FMA:5979] +synonym: "ventral spinal root" EXACT [] +xref: BAMS:vr +xref: BAMS:vrt +xref: BTO:0000865 +xref: FMA:5979 +xref: FMA:77516 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2620 +xref: http://en.wikipedia.org/wiki/Anterior_root_of_spinal_nerve +xref: http://linkedlifedata.com/resource/umls/id/C0205956 +xref: NCIT:C33860 +xref: NLXANAT:20090209 +xref: TAO:0000705 +xref: UMLS:C0205956 {source="ncithesaurus:Ventral_Nerve_Root"} +xref: ZFA:0000705 +is_a: UBERON:0009623 {different_relation_from="ZFA", source="FMA"} ! spinal nerve root + +[Term] +id: UBERON:0002261 +name: dorsal root of spinal cord +def: "The dorsal roots contain afferent sensory axons. The dorsal roots of each side continue outwards, along the way forming a dorsal root ganglion (also called a spinal ganglion)." [NLXANAT:20090208] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "dorsal root" EXACT [ZFA:0000652] +synonym: "dorsal root of spinal nerve" EXACT [FMA:5980] +synonym: "dorsal roots" RELATED [BAMS:drt] +synonym: "dorsal spinal nerve root" EXACT [FMA:5980] +synonym: "dorsal spinal root" EXACT [] +synonym: "posterior root of spinal nerve" EXACT [http://en.wikipedia.org/wiki/Posterior_root_of_spinal_nerve] +synonym: "radix dorsalis" EXACT [ZFA:0000652] +synonym: "radix posterior" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_root_of_spinal_nerve] +synonym: "radix posterior (nervus spinalis)" EXACT [FMA:5980] +synonym: "radix posterior nervi spinalis" RELATED [BTO:0000360] +synonym: "radix sensoria (nervus spinalis)" EXACT [FMA:5980] +synonym: "root dorsali nervi spinalis" RELATED [BTO:0000360] +synonym: "root sensoria nervi spinalis" RELATED [BTO:0000360] +synonym: "sensory root of spinal nerve" EXACT [FMA:5980] +synonym: "sensory spinal root" RELATED [BTO:0000360] +xref: BAMS:drt +xref: BTO:0000360 +xref: FMA:5980 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1661 +xref: http://en.wikipedia.org/wiki/Posterior_root_of_spinal_nerve +xref: http://linkedlifedata.com/resource/umls/id/C0205955 +xref: http://www.snomedbrowser.com/Codes/Details/362436008 +xref: NCIT:C32477 +xref: NLXANAT:20090208 +xref: TAO:0000652 +xref: UMLS:C0205955 {source="ncithesaurus:Dorsal_Root_of_the_Spinal_Nerve"} +xref: ZFA:0000652 +is_a: UBERON:0009623 {source="FMA"} ! spinal nerve root +relationship: extends_fibers_into UBERON:0000044 ! dorsal root ganglion + +[Term] +id: UBERON:0002262 +name: celiac ganglion +def: "The celiac ganglia are two large irregularly shaped masses of nerve tissue in the upper abdomen. Part of the sympathetic subdivision of the autonomic nervous system (ANS), the two celiac ganglia are the largest ganglia in the ANS, and they innervate most of the digestive tract. They have the appearance of lymph glands and are placed on either side of the midline in front of the crura of the diaphragm, close to the suprarenal glands (also called adrenal glands). The ganglion on the right side is placed behind the inferior vena cava. They are sometimes referred to as the semilunar ganglia or the solar ganglia. [WP,unvetted]." [http://en.wikipedia.org/wiki/Celiac_ganglia] +subset: uberon_slim +synonym: "coeliac ganglion" EXACT [FMA:77570] +xref: BAMS:GCE +xref: Celiac:ganglia +xref: EHDAA2:0000266 +xref: EHDAA:8946 +xref: EMAPA:19321 +xref: FMA:77570 +xref: http://linkedlifedata.com/resource/umls/id/C0007571 +xref: http://www.snomedbrowser.com/Codes/Details/362492008 +xref: MA:0001158 +xref: NCIT:C52830 +xref: UMLS:C0007571 {source="ncithesaurus:Coeliac_Ganglion"} +is_a: UBERON:0003964 {source="MA"} ! prevertebral ganglion + +[Term] +id: UBERON:0002263 +name: lentiform nucleus +def: "The lentiform nucleus or lenticular nucleus comprises the putamen and the globus pallidus within the basal ganglia. It is a large, cone-shaped mass of gray matter just lateral to the internal capsule. [WP,unvetted]." [http://en.wikipedia.org/wiki/Lentiform_nucleus] +subset: uberon_slim +synonym: "lenticular nucleus" RELATED [BTO:0002250] +synonym: "nucleus lenticularis" EXACT [BTO:0002250] +synonym: "nucleus lentiformis" EXACT [BTO:0002250] +synonym: "nucleus lentiformis" RELATED LATIN [http://en.wikipedia.org/wiki/Lentiform_nucleus] +xref: BTO:0002250 +xref: EMAPA:18208 +xref: EMAPA:19147 +xref: EV:0100186 +xref: FMA:77615 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1234 +xref: http://linkedlifedata.com/resource/umls/id/C0162342 +xref: http://www.snomedbrowser.com/Codes/Details/279319002 +xref: Lentiform:nucleus +xref: MA:0000896 +xref: NCIT:C32977 +xref: OpenCyc:Mx4rvvyH2ZwpEbGdrcN5Y29ycA +xref: UMLS:C0162342 {source="ncithesaurus:Lenticular_Nucleus"} +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: has_part UBERON:0001874 ! putamen +relationship: has_part UBERON:0001875 ! globus pallidus +relationship: part_of UBERON:0005403 {source="MA"} ! ventral striatum + +[Term] +id: UBERON:0002264 +name: olfactory bulb +def: "A bulbous anterior projection of the olfactory lobe that is the place of termination of the olfactory nerves and is especially well developed in lower vertebrates (as fishes)[BTO]." [BTO:0000961, http://en.wikipedia.org/wiki/Olfactory_bulb] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "bulbus olfactorius" EXACT [http://en.wikipedia.org/wiki/Olfactory_bulb] +synonym: "bulbus olfactorius" RELATED LATIN [http://en.wikipedia.org/wiki/Olfactory_bulb] +synonym: "bulbus olfactorius (Morgagni)" RELATED LATIN [NeuroNames:279] +synonym: "olfactory lobe" RELATED [ZFA:0000402] +synonym: "olfactory lobe (Barr & Kiernan)" RELATED [NeuroNames:279] +xref: AAO:0010165 +xref: BAMS:DLB +xref: BAMS:OB +xref: BAMS:Olf +xref: BIRNLEX:1137 +xref: BM:Tel-OB +xref: BTO:0000961 +xref: CALOHA:TS-0702 +xref: DHBA:10307 +xref: EHDAA2:0004705 +xref: EMAPA:32809 +xref: EV:0100173 +xref: FMA:77624 +xref: GAID:633 +xref: HBA:9303 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=279 {source="BIRNLEX:1137"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=279 +xref: http://linkedlifedata.com/resource/umls/id/C0028936 +xref: http://www.snomedbrowser.com/Codes/Details/279394006 +xref: MA:0000194 +xref: MESH:A08.186.211.577.699.573 +xref: NCIT:C28401 +xref: Olfactory:bulb +xref: TAO:0000402 +xref: UMLS:C0028936 {source="ncithesaurus:Olfactory_Bulb"} +xref: UMLS:C0028936 {source="BIRNLEX:1137"} +xref: VHOG:0000033 +xref: XAO:0004180 +xref: ZFA:0000402 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015212 ! lateral structure +disjoint_from: UBERON:0010010 {source="NIFSTD"} ! basal nucleus of telencephalon +relationship: contributes_to_morphology_of UBERON:0005366 ! olfactory lobe +relationship: in_lateral_side_of UBERON:0001893 {source="ISBN:0471888893"} ! telencephalon +relationship: part_of UBERON:0005366 ! olfactory lobe + +[Term] +id: UBERON:0002265 +name: olfactory tract +def: "White matter tract that contains projections from the olfactory bulb to other parts of the brain" [BIRNLEX:1663, http://en.wikipedia.org/wiki/Olfactory_tract, http://orcid.org/0000-0002-6601-2165, ISBN:0471888893] +subset: pheno_slim +subset: uberon_slim +synonym: "olfactory peduncle" RELATED [BTO:0003647] +synonym: "olfactory stalk" RELATED [NeuroNames:283] +synonym: "pedunclulus olfactorius" RELATED LATIN [NeuroNames:283] +synonym: "tractus olfactorium" RELATED LATIN [NeuroNames:283] +synonym: "tractus olfactorius" RELATED [BTO:0003647] +synonym: "tractus olfactorius" RELATED LATIN [http://en.wikipedia.org/wiki/Olfactory_tract] +xref: BAMS:olf +xref: BIRNLEX:1663 +xref: BTO:0003647 +xref: DHBA:12073 +xref: DHBA:12074 +xref: EMAPA:35615 +xref: FMA:77626 +xref: HBA:9302 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=283 {source="BIRNLEX:1663"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=283 +xref: http://linkedlifedata.com/resource/umls/id/C0162435 +xref: http://www.snomedbrowser.com/Codes/Details/362356008 +xref: MA:0000975 +xref: NCIT:C33207 +xref: Olfactory:tract +xref: UMLS:C0162435 {source="ncithesaurus:Olfactory_Tract"} +is_a: UBERON:0007702 ! tract of brain +relationship: part_of UBERON:0011299 ! white matter of telencephalon + +[Term] +id: UBERON:0002266 +name: anterior olfactory nucleus +def: "Laminated structure lying caudal to the olfactory bulb" [BIRNLEX:1085] +subset: uberon_slim +synonym: "anterior olfactory cortex" RELATED [BTO:0003649] +synonym: "AON" RELATED [BTO:0003649] +synonym: "area retrobulbaris" RELATED LATIN [NeuroNames:280] +synonym: "nucleus olfactorius anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_olfactory_nucleus] +synonym: "nucleus retrobulbaris [a8]" EXACT LATIN [FMA:77628, FMA:TA] +synonym: "regio retrobulbaris" RELATED LATIN [NeuroNames:280] +synonym: "retrobulbar nucleus [a8]" EXACT [] +synonym: "retrobulbar region" RELATED [NeuroNames:280] +xref: BAMS:AO +xref: BAMS:AON +xref: BIRNLEX:1085 +xref: BM:Tel-OAN +xref: BTO:0003649 +xref: DHBA:10308 +xref: EMAPA:35131 +xref: EV:0100174 +xref: FMA:77628 +xref: HBA:4324 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=280 {source="BIRNLEX:1085"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=280 +xref: http://en.wikipedia.org/wiki/Anterior_olfactory_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0175225 +xref: MA:0000968 +xref: MBA:159 +xref: NCIT:C52710 +xref: UMLS:C0175225 {source="BIRNLEX:1085"} +xref: UMLS:C0175225 {source="ncithesaurus:Anterior_Olfactory_Nucleus"} +is_a: UBERON:0009663 ! telencephalic nucleus +disjoint_from: UBERON:0010010 {source="NIFSTD"} ! basal nucleus of telencephalon +relationship: part_of UBERON:0002894 ! olfactory cortex + +[Term] +id: UBERON:0002267 +name: laterodorsal tegmental nucleus +def: "The laterodorsal tegmental nucleus (or lateroposterior tegmental nucleus) is a nucleus situated in the brainstem, spanning the midbrain tegmentum and the pontine tegmentum. [WP,unvetted]." [http://en.wikipedia.org/wiki/Laterodorsal_tegmental_nucleus] +subset: uberon_slim +synonym: "anterodorsal tegmental nucleus" RELATED [BAMS:LDT] +synonym: "lateroposterior tegmental nucleus" EXACT [] +synonym: "nucleus tegmentalis posterolateralis" EXACT LATIN [FMA:77654, FMA:TA] +synonym: "nucleus tegmentalis posterolateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Laterodorsal_tegmental_nucleus] +xref: BAMS:LDT +xref: BAMS:LDTg +xref: BTO:0004016 +xref: DHBA:12519 +xref: DMBA:16964 +xref: EMAPA:35490 +xref: FMA:77654 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1256 +xref: http://en.wikipedia.org/wiki/Laterodorsal_tegmental_nucleus +xref: MA:0001016 +xref: MBA:162 +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0007414 ! nucleus of midbrain tegmentum + +[Term] +id: UBERON:0002268 +name: olfactory organ +def: "An organ that houses olfactory neurons and is responsible for the sense of smell. Examples include the vertebrate nose and the Drosophila dorsal organ." [UBERON:cjm] +subset: functional_classification +synonym: "main olfactory organ" NARROW [] +synonym: "olfactory neuroepithelium" RELATED [BTO:0001772] +synonym: "olfactory organ" EXACT [BTO:0001772] +synonym: "olfactory sense organ" EXACT [] +synonym: "olfactory sensory organ" EXACT [FBbt:00005158] +synonym: "organ olfactus" RELATED [BTO:0001772] +synonym: "organum olfactorium" RELATED [BTO:0001772] +synonym: "primary olfactory organ" NARROW [] +xref: AAO:0010180 +xref: BTO:0001772 +xref: FBbt:00005158 +xref: FMA:77659 +xref: VHOG:0000287 +xref: XAO:0000273 +is_a: UBERON:0000020 ! sense organ + +[Term] +id: UBERON:0002269 +name: pupillary membrane +def: "The pupillary membrane in mammals exists in the fetus as a source of blood supply for the lens. It normally atrophies from the time of birth to the age of four to eight weeks." [http://en.wikipedia.org/wiki/Persistent_pupillary_membrane] +xref: FMA:77663 +xref: http://en.wikipedia.org/wiki/Persistent_pupillary_membrane +xref: MA:0001293 +is_a: UBERON:0000158 ! membranous layer +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: located_in UBERON:0001771 {source="MA-modified"} ! pupil +relationship: part_of UBERON:0000922 ! embryo +relationship: part_of UBERON:0001769 ! iris + +[Term] +id: UBERON:0002270 +name: hyaloid artery +def: "An artery that is part of the optic stalk of the eye and extends from the optic disc through the vitreous humor to the lens." [http://en.wikipedia.org/wiki/Hyaloid_artery] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "arteria hyaloidea" EXACT LATIN [http://en.wikipedia.org/wiki/Hyaloid_artery] +synonym: "central artery of retina" RELATED [EMAPA:19242] +synonym: "Cloquet's canal" RELATED [http://en.wikipedia.org/wiki/Hyaloid_artery] +synonym: "Cloquets canal" RELATED [http://en.wikipedia.org/wiki/Hyaloid_artery] +synonym: "hyaloid arteries" RELATED PLURAL [ZFA:0005045] +xref: EHDAA2:0004072 +xref: EMAPA:19242 +xref: FMA:77670 +xref: http://www.snomedbrowser.com/Codes/Details/308790003 +xref: Hyaloid:artery +xref: TAO:0005045 +xref: VHOG:0001478 +xref: XAO:0004155 +xref: ZFA:0005045 +is_a: UBERON:0001637 {source="ZFA"} ! artery +is_a: UBERON:0003499 ! brain blood vessel +is_a: UBERON:0005492 ! hyaloid vessel +relationship: develops_from UBERON:0001619 {source="EHDAA2"} ! ophthalmic artery +relationship: has_potential_to_develop_into UBERON:0006010 ! hyaloid canal +relationship: located_in UBERON:0005412 {source="EHDAA2"} ! optic fissure +relationship: located_in UBERON:0005606 {source="EHDAA2"} ! hyaloid cavity +relationship: part_of UBERON:0003098 {source="Wikipedia"} ! optic stalk +relationship: supplies UBERON:0000965 ! lens of camera-type eye + +[Term] +id: UBERON:0002271 +name: periventricular zone of hypothalamus +synonym: "hypothalamus periventricular zone" EXACT [] +synonym: "periventricular zone of the hypothalamus" RELATED [BAMS:PVZ] +synonym: "zona periventricularis hypothalamicae" EXACT LATIN [FMA:77682, FMA:TA] +xref: BAMS:PVZ +xref: EMAPA:35421 +xref: FMA:77682 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2292 +xref: MA:0000846 +xref: MBA:157 +xref: VHOG:0000623 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001898 ! hypothalamus + +[Term] +id: UBERON:0002272 +name: medial zone of hypothalamus +synonym: "hypothalamic medial zone behavioral control column" RELATED [BAMS:MEZ] +synonym: "hypothalamus medial zone" EXACT [] +synonym: "medial zone of the hypothalamus" RELATED [BAMS:MEZ] +synonym: "medial zone of the hypothalamus" RELATED [BAMS:MZ] +synonym: "zona medialis hypothalamicae" EXACT LATIN [FMA:77683, FMA:TA] +xref: BAMS:MEZ +xref: BAMS:MZ +xref: EMAPA:35419 +xref: FMA:77683 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2291 +xref: MA:0000837 +xref: MBA:467 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +disjoint_from: UBERON:0002273 {source="lexical"} ! lateral zone of hypothalamus +relationship: part_of UBERON:0001898 ! hypothalamus + +[Term] +id: UBERON:0002273 +name: lateral zone of hypothalamus +synonym: "hypothalamic lateral zone" RELATED [BAMS:LZ] +synonym: "hypothalamus lateral zone" EXACT [] +synonym: "lateral zone of the hypothalamus" RELATED [BAMS:LZ] +synonym: "zona lateralis hypothalamicae" EXACT LATIN [FMA:77684, FMA:TA] +xref: BAMS:LZ +xref: EMAPA:35418 +xref: FMA:77684 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2290 +xref: MA:0000833 +xref: MBA:290 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001898 ! hypothalamus + +[Term] +id: UBERON:0002274 +name: perifornical nucleus +xref: BAMS:PeF +xref: DHBA:11578 +xref: EMAPA:37716 {source="MA:th"} +xref: FMA:77688 +xref: HBA:12917 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2263 +xref: MA:0000836 +is_a: UBERON:0006568 ! hypothalamic nucleus +relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus + +[Term] +id: UBERON:0002275 +name: reticular formation +def: "A composite substructure of the brainstem that consists of the midbrain reticular formation, the pontine reticular formation and the medullary reticular formation ( Carpenter-1983 )." [NeuroNames:1223] +subset: uberon_slim +synonym: "brain stem reticular formation" EXACT [NeuroNames:1223] +synonym: "brainstem reticular formation" EXACT [MA:0003185] +synonym: "brainstem reticular formation" EXACT [NeuroNames:1223] +synonym: "reticular formation (classical)" EXACT [NeuroNames:1223] +synonym: "reticular formation of the brainstem" EXACT [NeuroNames:1223] +xref: BAMS:RET +xref: EMAPA:35188 +xref: FMA:77719 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1223 +xref: http://www.snomedbrowser.com/Codes/Details/361552007 +xref: MA:0003185 +xref: MESH:D012154 +xref: NLX:143558 +xref: Reticular:formation +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0002298 ! brainstem + +[Term] +id: UBERON:0002276 +name: lamina of spiral limbus +def: "The osseous spiral lamina consists of two plates of bone, and between these are the canals for the transmission of the filaments of the acoustic nerve. On the upper plate of that part of the lamina which is outside the vestibular membrane, the periosteum is thickened to form the limbus spiralis (or limbus laminæ spiralis), this ends externally in a concavity, the sulcus spiralis internus, which represents, on section, the form of the letter C. [WP,unvetted]." [http://en.wikipedia.org/wiki/Limbus_laminae_spiralis] +subset: pheno_slim +subset: uberon_slim +synonym: "limbus lamina spiralis" EXACT [MA:0001191] +synonym: "limbus laminae spiralis" EXACT [FMA:77721] +synonym: "limbus laminae spiralis osseae" EXACT [] +synonym: "spiral limbus" RELATED [] +synonym: "spiral limbus lamina" EXACT [FMA:77721] +xref: EMAPA:35496 +xref: FMA:77721 +xref: http://en.wikipedia.org/wiki/Limbus_laminae_spiralis +xref: MA:0001191 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous labyrinth + +[Term] +id: UBERON:0002277 +name: spiral sulcus +def: "A concavity in the floor of the cochlear duct, formed by either the overhanging vestibular lip (inner spiral sulcus) or the spiral prominence and the spiral organ (outer spiral sulcus)." [http://orcid.org/0000-0002-6601-2165] +synonym: "sulcus spiralis" EXACT [] +xref: EMAPA:35800 +xref: FMA:77744 +xref: MA:0001195 +is_a: UBERON:0000093 ! sulcus +relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous labyrinth + +[Term] +id: UBERON:0002278 +name: perilymphatic space +def: "The fluid-filled space separating the membranous from the osseous labyrinth." [Dorlands_Medical_Dictionary:MerckSource] +subset: vertebrate_core +synonym: "cisterna perilymphatica" RELATED [http://medical-dictionary.thefreedictionary.com/perilymphatic+space] +synonym: "Retzius space" RELATED [] +synonym: "spatium perilymphaticum" RELATED [http://medical-dictionary.thefreedictionary.com/perilymphatic+space] +xref: BTO:0002083 +xref: FMA:77745 +xref: http://www.snomedbrowser.com/Codes/Details/362576001 +xref: Perilymphatic:space +xref: ZFA:0005459 +is_a: UBERON:0002553 ! anatomical cavity +relationship: adjacent_to UBERON:0001839 ! bony labyrinth +relationship: adjacent_to UBERON:0001849 ! membranous labyrinth +relationship: part_of UBERON:0001846 {source="ZFA"} ! internal ear + +[Term] +id: UBERON:0002279 +name: vestibular aqueduct +def: "At the hinder part of the medial wall of the vestibule is the orifice of the vestibular aqueduct, which extends to the posterior surface of the petrous portion of the temporal bone. It transmits a small vein, and contains a tubular prolongation of the membranous labyrinth, the ductus endolymphaticus, which ends in a cul-de-sac between the layers of the dura mater within the cranial cavity. [WP,unvetted]." [http://en.wikipedia.org/wiki/Vestibular_aqueduct] +subset: pheno_slim +subset: uberon_slim +synonym: "aqueductus vestibuli" RELATED LATIN [http://en.wikipedia.org/wiki/Vestibular_aqueduct] +xref: FMA:77821 +xref: GAID:885 +xref: MA:0001186 +xref: MESH:D014723 +xref: Vestibular:aqueduct +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0013685 ! foramen of skull +intersection_of: UBERON:0013685 ! foramen of skull +intersection_of: conduit_for UBERON:0036074 ! vein of vestibular aqueduct +relationship: conduit_for UBERON:0036074 ! vein of vestibular aqueduct +relationship: part_of UBERON:0005236 ! osseus labyrinth vestibule + +[Term] +id: UBERON:0002280 +name: otolith +def: "Acellular structure composed of calcium carbonate located in the otolith organ." [http://en.wikipedia.org/wiki/Otolith, ZFIN:curator] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "immature otolith" RELATED [] +synonym: "immature otoliths" RELATED [] +synonym: "otoconia" RELATED PLURAL [] +synonym: "otoconial crystal" RELATED [MP:0002894] +synonym: "otoconium" EXACT [] +synonym: "otoliths" EXACT PLURAL [] +synonym: "statoconia" RELATED PLURAL [] +synonym: "statoconium" EXACT [] +synonym: "statolith" RELATED [] +xref: ANISEED:777311 +xref: ANISEED:874485 +xref: EMAPA:37924 {source="MA:th"} +xref: FMA:77826 +xref: http://en.wikipedia.org/wiki/Otolith +xref: http://linkedlifedata.com/resource/umls/id/C0029894 +xref: http://www.snomedbrowser.com/Codes/Details/368951003 +xref: NCIT:C33230 +xref: TAO:0001621 +xref: UMLS:C0029894 {source="ncithesaurus:Otolith"} +xref: ZFA:0001617 +is_a: UBERON:0000476 ! acellular anatomical structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002519 {source="MP", source="Wikipedia"} ! otolithic part of statoconial membrane + +[Term] +id: UBERON:0002281 +name: vestibular membrane of cochlear duct +def: "A membrane inside the cochlea of the inner ear. It separates scala media from scala vestibuli. Together with the basilar membrane it creates a compartment in the cochlea filled with endolymph, which is important for the function of the organ of Corti. It primarily functions as a diffusion barrier, allowing nutrients to travel from the perilymph to the endolymph of the membranous labyrinth. Histologically, the membrane is composed of two layers of flattened epithelium, separated by a basal lamina. Its structure suggests that its function is transport of fluid and electrolytes." [http://en.wikipedia.org/wiki/Reissner's_membrane] +subset: pheno_slim +subset: uberon_slim +synonym: "membrana vestibularis ductus cochlearis" EXACT [MP:0006021] +synonym: "paries vestibularis ductus cochlearis" EXACT [MP:0006021] +synonym: "Reissner membrane" EXACT [] +synonym: "Reissner's membrane" EXACT [FMA:77829] +synonym: "superior wall of cochlear duct" EXACT [FMA:77829] +synonym: "vestibular membrane" EXACT [MA:0001200] +synonym: "vestibular membrane" RELATED [MP:0006021] +synonym: "vestibular membrane of Reissner" EXACT [FMA:77829] +synonym: "vestibular wall of cochlear duct" EXACT [MP:0006021] +xref: EMAPA:35922 +xref: FMA:77829 +xref: http://www.snomedbrowser.com/Codes/Details/362575002 +xref: MA:0001200 +xref: NCIT:C33083 +xref: Reissner's:membrane +is_a: UBERON:0000094 ! membrane organ +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: adjacent_to UBERON:0001863 ! scala vestibuli +relationship: adjacent_to UBERON:0002295 ! scala media +relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth + +[Term] +id: UBERON:0002282 +name: stria vascularis of cochlear duct +def: "The upper portion of the spiral ligament contains numerous capillary loops and small blood vessels, and is termed the stria vascularis. It produces endolymph for the scala media, one of the three fluid-filled compartments of the cochlea. [WP,unvetted]." [http://en.wikipedia.org/wiki/Stria_vascularis] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "psalterial cord" EXACT [MP:0000048] +synonym: "stria vascularis" EXACT [] +synonym: "stria vascularis ductus cochlearis" RELATED LATIN [BTO:0001819] +synonym: "stria vascularis of cochlea" EXACT [FMA:77832] +synonym: "vascular stria of cochlear duct" RELATED [BTO:0001819] +synonym: "vascular stripe of cochlear duct" EXACT [MP:0000048] +xref: BIRNLEX:2525 +xref: BTO:0001819 +xref: CALOHA:TS-0982 +xref: EFO:0001644 +xref: EMAPA:35827 +xref: FMA:77832 +xref: GAID:875 +xref: http://linkedlifedata.com/resource/umls/id/C0229477 +xref: http://www.snomedbrowser.com/Codes/Details/279842002 +xref: MA:0001198 +xref: MESH:D013316 +xref: Stria:vascularis +xref: UMLS:C0229477 {source="BIRNLEX:2525"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001855 {source="FMA", source="MA"} ! cochlear duct of membranous labyrinth + +[Term] +id: UBERON:0002283 +name: nail matrix +def: "Portion of tissue (or germinal matrix) upon which the nail rests, the part of the nail bed that extends beneath the nail root and contains nerves, lymph and blood vessels. The matrix is responsible for the production of the cells that become the nail plate. The width and thickness of the nail plate is determined by the size, length, and thickness of the matrix, while the shape of the fingertip itself determines if the nail plate is flat, arched, or hooked. The matrix will continue to grow as long as it receives nutrition and remains in a healthy condition. As new nail plate cells are incubated, they emerge from the matrix round and white to push older nail plate cells forward; and in this way yet older cells become compressed, flat, and translucent, making the pink colour of the capillaries in the nail bed below visible[WP]." [https://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "keratogenous membrane" EXACT [http://en.wikipedia.org/wiki/Nail_(anatomy)#Parts_of_the_nail] +synonym: "matrix unguis" EXACT LATIN [http://en.wikipedia.org/wiki/Nail_(anatomy)#Parts_of_the_nail] +synonym: "nail germinal matrix" EXACT [http://en.wikipedia.org/wiki/Nail_(anatomy)#Parts_of_the_nail] +synonym: "nail root" RELATED [http://dermatology.about.com/cs/nailanatomy/a/nailanatomy.htm] +synonym: "onychostroma" EXACT [http://en.wikipedia.org/wiki/Nail_(anatomy)#Parts_of_the_nail] +xref: EMAPA:35582 +xref: FMA:77856 +xref: MA:0002707 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001705 ! nail + +[Term] +id: UBERON:0002284 +name: hyponychium +def: "Epithelium located beneath the nail plate at the junction between the free edge and the skin of the fingertip. It forms a seal that protects the nail bed." [http://en.wikipedia.org/wiki/Hyponychium] +subset: uberon_slim +xref: EMAPA:37508 {source="MA:th"} +xref: FMA:77860 +xref: http://en.wikipedia.org/wiki/Hyponychium +xref: http://www.snomedbrowser.com/Codes/Details/300918002 +xref: MA:0002705 +is_a: UBERON:0002027 ! stratum corneum of epidermis +relationship: immediately_deep_to UBERON:0008198 ! nail plate +relationship: part_of UBERON:0002097 ! skin of body +relationship: protects UBERON:0005273 ! nail bed + +[Term] +id: UBERON:0002285 +name: telencephalic ventricle +def: "A brain ventricle that is part of a telencephalon. In mammals and species with an evaginated telencephalon, this is one of a pair of lateral structures, one in each hemisphere" [http://en.wikipedia.org/wiki/Lateral_ventricle, https://orcid.org/0000-0002-6601-2165] +comment: modeled as space in EHDAA2 +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "forebrain ventricle" RELATED [] +synonym: "lateral ventricle" EXACT HUMAN_PREFERRED [MA:0000192] +synonym: "lateral ventricle of brain" RELATED [BTO:0000879] +synonym: "lateral ventricles" EXACT PLURAL [] +synonym: "tectal ventricle" RELATED [] +synonym: "telencephalic ventricle" EXACT [VHOG:0000643, ZFA:0000696] +synonym: "telencephalic ventricles" RELATED [BAMS:Tel-V] +synonym: "telencephalic vesicle" RELATED [ZFA:0000696] +synonym: "telencephalon lateral ventricle" EXACT [EHDAA2:0001984] +xref: BAMS:LV +xref: BAMS:Tel-V +xref: BIRNLEX:1263 +xref: BM:Tel-LV +xref: BTO:0000879 +xref: CALOHA:TS-1230 +xref: DHBA:10596 +xref: DMBA:126651562 +xref: EFO:0001961 +xref: EHDAA2:0001984 +xref: EHDAA:3502 +xref: EHDAA:6576 +xref: EMAPA:16914 +xref: EV:0100307 +xref: FMA:78448 +xref: GAID:611 +xref: HBA:9419 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=209 +xref: http://linkedlifedata.com/resource/umls/id/C0152279 +xref: http://www.snomedbrowser.com/Codes/Details/180930008 +xref: Lateral:ventricle +xref: MA:0000192 +xref: MBA:81 +xref: MESH:D020547 +xref: NCIT:C12834 +xref: OpenCyc:Mx4rvYsFdZwpEbGdrcN5Y29ycA +xref: TAO:0000696 +xref: UMLS:C0152279 {source="ncithesaurus:Lateral_Ventricle"} +xref: UMLS:C0152279 {source="BIRNLEX:1263"} +xref: VHOG:0000643 +xref: ZFA:0000696 +is_a: UBERON:0004086 ! brain ventricle +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0004086 ! brain ventricle +intersection_of: part_of UBERON:0001893 ! telencephalon +relationship: develops_from UBERON:0009676 ! early telencephalic vesicle +relationship: part_of UBERON:0001893 ! telencephalon +relationship: transformation_of UBERON:0009676 {notes="material to immaterial", source="EHDAA2"} ! early telencephalic vesicle + +[Term] +id: UBERON:0002286 +name: third ventricle +def: "Part of the ventricular system of the brain, forming a single large cavity in the midline of the diencephalon; it is continuous with the lateral ventricles through the interventricular foramen and the fourth ventricle through the cerebral aqueduct. (Maryann Martone)" [BIRNLEX:714] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "3rd ventricle" EXACT [] +synonym: "diencephalic ventricle" RELATED [] +synonym: "diencephalic vesicle" NARROW [] +synonym: "ventriculus diencephali" EXACT [ZFA:0000161] +synonym: "ventriculus tertius cerebri" RELATED LATIN [http://en.wikipedia.org/wiki/Third_ventricle] +xref: BAMS:3V +xref: BAMS:V3 +xref: BIRNLEX:714 +xref: BM:Die-3V +xref: CALOHA:TS-2058 +xref: DHBA:10602 +xref: EHDAA2:0000084 +xref: EMAPA:16900 +xref: EV:0100308 +xref: FMA:78454 +xref: GAID:614 +xref: HBA:9420 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=446 +xref: http://linkedlifedata.com/resource/umls/id/C0149555 +xref: http://www.snomedbrowser.com/Codes/Details/180931007 +xref: MA:0000182 +xref: MBA:129 +xref: MESH:D020542 +xref: NCIT:C12827 +xref: OpenCyc:Mx4rvakhcJwpEbGdrcN5Y29ycA +xref: TAO:0000161 +xref: Third:ventricle +xref: UMLS:C0149555 {source="BIRNLEX:714"} +xref: UMLS:C0149555 {source="ncithesaurus:Third_Ventricle_of_Brain"} +xref: VHOG:0000007 +xref: ZFA:0000161 +is_a: UBERON:0004086 ! brain ventricle +relationship: contributes_to_morphology_of UBERON:0001894 ! diencephalon +relationship: develops_from UBERON:0006284 {source="EHDAA2"} ! early prosencephalic vesicle +relationship: part_of UBERON:0001894 ! diencephalon + +[Term] +id: UBERON:0002287 +name: optic recess of third ventricle +def: "Recess in third ventricle lying in front of the optic chiasm at the base of the lamina terminalis" [NLX:144280] +subset: uberon_slim +subset: vertebrate_core +synonym: "optic recess" EXACT [] +synonym: "optic recesses" RELATED [VHOG:0000595] +synonym: "preoptic recess" EXACT [] +synonym: "preoptic recess" RELATED [] +synonym: "recessus opticus" RELATED [] +synonym: "recessus praeopticus" RELATED [] +synonym: "recessus supraopticus" EXACT LATIN [FMA:78455, FMA:TA] +synonym: "recessus supraopticus" RELATED LATIN [http://en.wikipedia.org/wiki/Optic_recess] +synonym: "supraoptic recess" EXACT [] +synonym: "supraoptic recess" RELATED [] +xref: BAMS:ORe +xref: EHDAA2:0001317 +xref: EHDAA:1343 +xref: EHDAA:1973 +xref: EHDAA:2649 +xref: EHDAA:3478 +xref: EMAPA:16902 +xref: FMA:78455 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=457 +xref: http://www.snomedbrowser.com/Codes/Details/369279008 +xref: NLX:144280 +xref: Optic:recess +xref: TAO:0000049 +xref: VHOG:0000595 +xref: ZFA:0000049 +is_a: UBERON:0002553 ! anatomical cavity +relationship: part_of UBERON:0002286 ! third ventricle + +[Term] +id: UBERON:0002288 +name: choroid plexus of third ventricle +def: "Part of choroid plexus contained in the third ventricle" [NLX:18606] +subset: vertebrate_core +synonym: "3rd ventricle choroid plexus" RELATED [] +synonym: "chorioid plexus of cerebral hemisphere of third ventricle" EXACT [OBOL:automatic] +synonym: "chorioid plexus of third ventricle" EXACT [] +synonym: "choroid plexus third ventricle" EXACT [ZFA:0001444] +synonym: "diencephalic choroid plexus" EXACT [ZFA:0001444] +synonym: "third ventricle chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] +synonym: "third ventricle choroid plexus" EXACT [] +xref: BAMS:chp3 +xref: BAMS:cp3v +xref: EMAPA:18543 +xref: FMA:78462 +xref: HBA:9709 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=452 +xref: http://linkedlifedata.com/resource/umls/id/C0152291 +xref: http://www.snomedbrowser.com/Codes/Details/61576002 +xref: MA:0000879 +xref: NCIT:C49782 +xref: NLX:18606 +xref: TAO:0001444 +xref: UMLS:C0152291 {source="ncithesaurus:Choroid_Plexus_of_the_Third_Ventricle"} +xref: VHOG:0001374 +xref: ZFA:0001444 +is_a: UBERON:0001886 ! choroid plexus +intersection_of: UBERON:0001886 ! choroid plexus +intersection_of: part_of UBERON:0002286 ! third ventricle +relationship: part_of UBERON:0002286 ! third ventricle + +[Term] +id: UBERON:0002289 +name: midbrain cerebral aqueduct +alt_id: UBERON:0005684 +def: "Part of ventricular system of brain consisting of a narrow channel in the midbrain connecting the third and fourth ventricles. (Maryann Martone)" [BIRNLEX:1261] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "aqueduct" RELATED [BAMS:AQ] +synonym: "aqueduct (Sylvius)" EXACT [] +synonym: "aqueduct of midbrain" EXACT [] +synonym: "aqueduct of Sylvius" EXACT [] +synonym: "aqueduct of Sylvius" RELATED [BAMS:AQ] +synonym: "aqueductus mesencephali" EXACT LATIN [FMA:78467, FMA:TA] +synonym: "aqueductus mesencephali" RELATED LATIN [http://en.wikipedia.org/wiki/Cerebral_aqueduct] +synonym: "cerebral aquaduct" EXACT [ZFA:0000159] +synonym: "cerebral aqueduct" EXACT [MA:0000208] +synonym: "cerebral aqueduct of Sylvius" EXACT [] +synonym: "cerebral aqueduct proper" RELATED [BAMS:AQ] +synonym: "medial tectal ventricle" EXACT NON_AMNIOTE [ZFA:0000159] +synonym: "mesencephalic duct" EXACT [http://en.wikipedia.org/wiki/Cerebral_aqueduct] +synonym: "mesencephalic ventricle" EXACT NON_AMNIOTE [ZFA:0000159] +synonym: "mesencephalic vesicle" RELATED NON_AMNIOTE [ZFA:0000159] +synonym: "midbrain cerebral aqueduct" EXACT [EHDAA2:0001163] +synonym: "midbrain ventricle" EXACT NON_AMNIOTE [ZFA:0000159] +synonym: "Sylvian aqueduct" EXACT [http://en.wikipedia.org/wiki/Cerebral_aqueduct] +synonym: "tectal ventricle" EXACT NON_AMNIOTE [ZFA:0000159] +xref: BAMS:AQ +xref: BAMS:Aq +xref: BIRNLEX:1261 +xref: BM:MB-AQ +xref: Cerebral:aqueduct +xref: DHBA:10651 +xref: DHBA:12369 +xref: DMBA:126651722 +xref: EFO:0003501 +xref: EHDAA2:0001163 +xref: EHDAA:3696 +xref: EMAPA:17795 +xref: EV:0100309 +xref: FMA:78467 +xref: GAID:583 +xref: HBA:265505702 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=509 +xref: http://linkedlifedata.com/resource/umls/id/C0007769 +xref: http://www.snomedbrowser.com/Codes/Details/279249003 +xref: MA:0000208 +xref: MBA:140 +xref: MESH:A08.186.211.132.659.822.187 +xref: NCIT:C32135 +xref: ncithesaurus:Cerebral_Aqueduct +xref: TAO:0000159 +xref: UMLS:C0007769 {source="BIRNLEX:1261"} +xref: UMLS:C0007769 {source="ncithesaurus:Aqueduct_of_Sylvius"} +xref: VHOG:0000832 +xref: ZFA:0000159 +is_a: UBERON:0004086 ! brain ventricle +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0013148 {source="EHDAA2"} ! early midbrain vesicle +relationship: part_of UBERON:0001891 ! midbrain + +[Term] +id: UBERON:0002290 +name: choroid plexus of fourth ventricle +def: "Choroid plexus of the fourth ventricle" [NLX:27388] +subset: vertebrate_core +synonym: "4th ventricle choroid plexus" RELATED [] +synonym: "chorioid plexus of cerebral hemisphere of fourth ventricle" EXACT [OBOL:automatic] +synonym: "chorioid plexus of fourth ventricle" EXACT [] +synonym: "choroid plexus fourth ventricle" EXACT [ZFA:0001446] +synonym: "fourth ventricle chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] +synonym: "fourth ventricle choroid plexus" EXACT [] +xref: BAMS:chp4 +xref: BAMS:cp4v +xref: DHBA:12808 +xref: EMAPA:32742 +xref: FMA:78492 +xref: HBA:9710 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=638 +xref: http://linkedlifedata.com/resource/umls/id/C0152293 +xref: http://www.snomedbrowser.com/Codes/Details/42214001 +xref: MA:0000983 +xref: NCIT:C32308 +xref: NLX:27388 +xref: TAO:0001446 +xref: UMLS:C0152293 {source="ncithesaurus:Choroid_Plexus_of_the_Fourth_Ventricle"} +xref: VHOG:0001375 +xref: ZFA:0001446 +is_a: UBERON:0001886 ! choroid plexus +is_a: UBERON:0006694 ! cerebellum vasculature +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001886 ! choroid plexus +intersection_of: part_of UBERON:0002422 ! fourth ventricle +relationship: part_of UBERON:0002422 ! fourth ventricle + +[Term] +id: UBERON:0002291 +name: central canal of spinal cord +alt_id: UBERON:0002220 +def: "Spinal cord structure that is part of the ventricular system and is filled with cerebral-spinal fluid and runs the length of the spinal cord." [http://www.ncbi.nlm.nih.gov/pubmed/23409159, ZFIN:curator] +comment: previously mapped to FMA:75364. Note some ontologies (NIF, SNOMED) subdivide this into lumbar, thoracic, etc. Note we follow FMA in distinguishing between the canal and the lumen +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "canalis centralis" EXACT [ZFA:0000938] +synonym: "central canal" EXACT [ZFA:0000938] +synonym: "central canal of spinal cord" EXACT [] +synonym: "central canal, spinal cord/medulla" RELATED [BAMS:C] +synonym: "spinal cord central canal" EXACT [] +synonym: "ventricle of spinal cord" EXACT [FMA:78497] +xref: BAMS:C +xref: BAMS:CC +xref: BIRNLEX:1409 +xref: DHBA:146035108 +xref: DMBA:126652042 +xref: EHDAA2:0004361 +xref: EMAPA:35789 +xref: FMA:78497 +xref: HBA:9422 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1733 +xref: http://en.wikipedia.org/wiki/Central_canal_of_spinal_cord +xref: http://linkedlifedata.com/resource/umls/id/C0459414 +xref: http://www.snomedbrowser.com/Codes/Details/279447004 +xref: MA:0001117 +xref: MBA:164 +xref: NCIT:C12891 +xref: TAO:0000938 +xref: UMLS:C0459414 {source="ncithesaurus:Central_Canal"} +xref: ZFA:0000938 +is_a: UBERON:0004111 {source="cjm"} ! anatomical conduit +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: channel_for UBERON:0001359 ! cerebrospinal fluid +relationship: contributes_to_morphology_of UBERON:0002240 ! spinal cord +relationship: develops_from UBERON:0001049 ! neural tube +relationship: has_part UBERON:0001359 ! cerebrospinal fluid +relationship: part_of UBERON:0002240 {source="MA"} ! spinal cord +relationship: part_of UBERON:0005281 {source="FMA"} ! ventricular system of central nervous system + +[Term] +id: UBERON:0002292 +name: costovertebral joint +def: "The costovertebral joints are the articulations that connect the heads of the ribs with the bodies of the thoracic vertebrae. Joining of ribs to the vertebrae occurs at two places, the head and the tubercle of the rib. Two convex facets from the head attach to two adjacent vertebrae. This forms a trochoid joint, which is strengthened by the ligament of the head and the intercapital ligament. Articulation of the tubercle is to the transverse process of the adjacent vertebrae. This articulation is reinforced by the dorsal costotransverse ligament. [WP,unvetted]." [http://en.wikipedia.org/wiki/Costovertebral_joint] +subset: uberon_slim +synonym: "costal head joint" RELATED [FMA:7951] +synonym: "costocorporeal joint" RELATED [FMA:7951] +synonym: "costovertebral synovial joint" EXACT [FMA:10382] +synonym: "joint of costal head" RELATED [FMA:7951] +synonym: "joint of head of rib" RELATED [FMA:7951] +xref: Costovertebral:joint +xref: EMAPA:19020 +xref: FMA:10382 +xref: http://linkedlifedata.com/resource/umls/id/C0224681 +xref: http://www.snomedbrowser.com/Codes/Details/263315000 +xref: MA:0001510 +xref: NCIT:C32394 +xref: UMLS:C0224681 {source="ncithesaurus:Costovertebral_Joint"} +is_a: UBERON:0002001 {source="MA"} ! joint of rib +is_a: UBERON:0002217 {source="FMA"} ! synovial joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0002230 ! head of rib +intersection_of: connects UBERON:0002347 ! thoracic vertebra +relationship: connects UBERON:0002230 ! head of rib +relationship: connects UBERON:0002347 ! thoracic vertebra + +[Term] +id: UBERON:0002293 +name: costochondral joint +def: "A bars of hyaline cartilage located between the distal part of a rib and a costal cartilage, connecting the ribs to the sternum ." [HP:0000920, http://en.wikipedia.org/wiki/Costochondral_joint] +subset: pheno_slim +subset: uberon_slim +synonym: "articulatio costochondralis" EXACT [FMA:7956, FMA:TA] +synonym: "articulationes costochondrales" RELATED LATIN [http://en.wikipedia.org/wiki/Costochondral_joint] +synonym: "chondrocostal synchondrosis" EXACT [FMA:7956] +synonym: "costochondral junction" EXACT [FMA:7956, HP:0000920] +synonym: "costochondral synchondrosis" EXACT [FMA:7956] +xref: Costochondral:joint +xref: EMAPA:36490 +xref: FMA:7956 +xref: http://linkedlifedata.com/resource/umls/id/C0224683 +xref: http://www.snomedbrowser.com/Codes/Details/282413008 +xref: MA:0001509 +xref: NCIT:C32392 +xref: OpenCyc:Mx4rvfy27JwpEbGdrcN5Y29ycA +xref: UMLS:C0224683 {source="ncithesaurus:Costochondral_Joint"} +is_a: UBERON:0002001 {source="MA"} ! joint of rib +is_a: UBERON:0002215 ! synchondrosis +intersection_of: UBERON:0002215 ! synchondrosis +intersection_of: connects UBERON:0002236 ! costal cartilage +intersection_of: connects UBERON:0010424 ! distal segment of rib +relationship: connects UBERON:0002236 ! costal cartilage +relationship: connects UBERON:0010424 ! distal segment of rib + +[Term] +id: UBERON:0002294 +name: biliary system +def: "Organ system subdivision that consists of the organs and ducts that are involved in the production and transportation of bile. In most species this is the gallbladder and the bile ducts (biliary tree)." [http://en.wikipedia.org/wiki/Biliary_system] +subset: pheno_slim +subset: uberon_slim +synonym: "biliary apparatus" EXACT [FMA:79646] +synonym: "biliary tract" RELATED [FMA:79646, MA:0001273] +xref: Biliary:system +xref: FMA:79646 +xref: GAID:279 +xref: http://www.snomedbrowser.com/Codes/Details/361354009 +xref: MA:0001273 +xref: MESH:D001659 +xref: NCIT:C12678 +is_a: UBERON:0011216 ! organ system subdivision +disjoint_from: UBERON:0002330 ! exocrine system +disjoint_from: UBERON:0002390 ! hematopoietic system +disjoint_from: UBERON:0002405 ! immune system +disjoint_from: UBERON:0002416 ! integumental system +disjoint_from: UBERON:0002423 ! hepatobiliary system +disjoint_from: UBERON:0004456 ! entire sense organ system +relationship: has_part UBERON:0001173 ! biliary tree +relationship: part_of UBERON:0002423 ! hepatobiliary system + +[Term] +id: UBERON:0002295 +name: scala media +def: "the division of the spiral canal of the cochlea that contains the organ of Corti (the neuroepithelial receptor organ for hearing)" [http://www.ncbi.nlm.nih.gov/pubmed/1680563, MGI:anna, MP:0003169] +comment: located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Scala media houses the organ of Corti. [Wikipedia:Scala_media] +subset: pheno_slim +subset: uberon_slim +synonym: "cochlear duct" RELATED [] +xref: EHDAA2:0000262 +xref: EMAPA:35751 +xref: FMA:79789 +xref: MA:0002458 +xref: Scala:media +is_a: UBERON:0011060 {source="MA"} ! perilymphatic channel +is_a: UBERON:0013685 ! foramen of skull +relationship: contributes_to_morphology_of UBERON:0001844 ! cochlea +relationship: part_of UBERON:0001844 {source="FMA"} ! cochlea + +[Term] +id: UBERON:0002296 +name: dorsal mesentery +def: "The mesentery that originates from the dorsal side of the peritoneal cavity[ZFA]." [http://en.wikipedia.org/wiki/Dorsal_mesentery, http://en.wikipedia.org/wiki/Mesentery#Development, ZFIN:curator] +subset: uberon_slim +subset: vertebrate_core +synonym: "dorsal mesogastrium" RELATED [http://en.wikipedia.org/wiki/Dorsal_mesentery] +synonym: "mesenterium dorsale commune" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsal_mesentery] +xref: Development +xref: EHDAA2:0004560 +xref: EHDAA:3019 +xref: EHDAA:3033 +xref: EHDAA:3921 +xref: EHDAA:3934 +xref: EHDAA:3957 +xref: EHDAA:3971 +xref: FMA:79795 +xref: http://www.snomedbrowser.com/Codes/Details/308823000 +xref: TAO:0005130 +xref: ZFA:0005130 +is_a: UBERON:0006598 ! presumptive structure +relationship: has_potential_to_develop_into UBERON:0002095 ! mesentery +relationship: part_of UBERON:0009664 {source="EHDAA2"} ! gut mesentery + +[Term] +id: UBERON:0002297 +name: cerumen +def: "The yellow or brown waxy secretions produced by vestigial apocrine sweat glands in the external ear canal[MESH]." [MESH:A12.200.147] +subset: uberon_slim +synonym: "ear wax" EXACT [] +synonym: "earwax" EXACT [] +xref: ENVO:02000028 +xref: FMA:79869 +xref: GAID:1158 +xref: http://en.wikipedia.org/wiki/Earwax +xref: http://linkedlifedata.com/resource/umls/id/C0740486 +xref: MA:0002506 +xref: MESH:D002571 +xref: NCIT:C32293 +xref: UMLS:C0740486 {source="ncithesaurus:Cerumen"} +is_a: UBERON:0001089 ! sweat +relationship: located_in UBERON:0001352 ! external acoustic meatus +relationship: produced_by UBERON:0000382 ! apocrine sweat gland + +[Term] +id: UBERON:0002298 +name: brainstem +def: "Stalk-like part of the brain that includes amongst its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,MP,generalized]." [http://en.wikipedia.org/wiki/Brainstem, ISBN:0471888893, MP:0005277, ZFA:0001707] +comment: 'brainstem' is a loose term that sometimes refers to the ventral parts o the brain except for any part of the telencephalon - sometimes it includes the diencephalon or subpallial telencephalon structures (ISBN:0471888893). Here we use it in a more restriced sense, to include only the medulla oblongata, pons (when present) and the midbrain tegmentum (following the ZFA definitions). +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "accessory medullary lamina of pallidum" RELATED [NeuroNames:236] +synonym: "brain stem" EXACT [ABA:BS] +synonym: "lamella pallidi incompleta" RELATED LATIN [NeuroNames:236] +synonym: "lamina medullaris accessoria" RELATED LATIN [NeuroNames:236] +synonym: "lamina medullaris incompleta pallidi" RELATED LATIN [NeuroNames:236] +synonym: "lamina pallidi incompleta" RELATED LATIN [NeuroNames:236] +synonym: "truncus encephali" EXACT LATIN [http://en.wikipedia.org/wiki/Brainstem] +synonym: "truncus encephalicus" RELATED LATIN [BTO:0000146] +xref: BAMS:BS +xref: BIRNLEX:1565 +xref: BTO:0000146 +xref: CALOHA:TS-0093 +xref: EFO:0001962 +xref: EMAPA:32678 +xref: EV:0100241 +xref: FMA:79876 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=236 {source="BIRNLEX:1565"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=236 +xref: http://en.wikipedia.org/wiki/Brainstem +xref: http://linkedlifedata.com/resource/umls/id/C0006121 +xref: http://www.snomedbrowser.com/Codes/Details/180925009 +xref: MA:0000169 +xref: MBA:343 +xref: MESH:D001933 +xref: NCIT:C12441 +xref: TAO:0002156 +xref: UMLS:C0006121 {source="BIRNLEX:1565"} +xref: UMLS:C0006121 {source="ncithesaurus:Brain_Stem"} +xref: VHOG:0001457 +xref: ZFA:0001707 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: continuous_with UBERON:0002240 ! spinal cord +relationship: contributes_to_morphology_of UBERON:0000955 ! brain +relationship: has_part UBERON:0001896 ! medulla oblongata +relationship: has_part UBERON:0001943 ! midbrain tegmentum + +[Term] +id: UBERON:0002299 +name: alveolus of lung +def: "Spherical outcropping of the respiratory bronchioles and primary site of gas exchange with the blood. Alveoli are particular to mammalian lungs. Different structures are involved in gas exchange in other vertebrates[WP]." [http://en.wikipedia.org/wiki/Pulmonary_alveolus] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "alveoli" RELATED PLURAL [BTO:0000060] +synonym: "alveolus" BROAD [] +synonym: "alveolus pulmonis" EXACT [http://en.wikipedia.org/wiki/Pulmonary_alveolus] +synonym: "alveolus pulmonis" RELATED LATIN [http://en.wikipedia.org/wiki/Pulmonary_alveolus] +synonym: "lung alveolus" EXACT [] +synonym: "pulmonary alveolus" EXACT [FMA:7318] +synonym: "respiratory alveoli" RELATED PLURAL [] +synonym: "respiratory alveolus" EXACT [] +xref: BTO:0000060 +xref: CALOHA:TS-0031 +xref: EFO:0001985 +xref: EMAPA:32682 +xref: EV:0100043 +xref: FMA:7318 +xref: GAID:349 +xref: http://www.snomedbrowser.com/Codes/Details/361364000 +xref: MA:0000420 +xref: MESH:D011650 +xref: Pulmonary:alveolus +xref: VHOG:0001445 +is_a: UBERON:0003215 ! alveolus +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0003215 ! alveolus +intersection_of: part_of UBERON:0002048 ! lung +relationship: contributes_to_morphology_of UBERON:0008874 ! pulmonary acinus +relationship: part_of UBERON:0002169 {source="FMA"} ! alveolar sac + +[Term] +id: UBERON:0002300 +name: obsolete ventricle +def: "A chamber of an organ with cavitated organ parts. Examples: right ventricle of heart, lateral ventricle of brain." [http://en.wikipedia.org/wiki/Ventricle_of_the_larynx] +xref: http://en.wikipedia.org/wiki/Ventricle_of_the_larynx +is_obsolete: true +consider: FMA:82553 + +[Term] +id: UBERON:0002301 +name: layer of neocortex +def: "One of the layers of the neocortex." [http://orcid.org/0000-0002-6601-2165] +synonym: "cerebral cortex layer" RELATED [MA:0000186] +synonym: "cortical layer" BROAD [] +synonym: "lamina of neocortex" RELATED [FMA:83138] +synonym: "layer of neocortex" EXACT [FMA:83138] +synonym: "neocortex layer" EXACT [MA:0000186] +xref: ABA:CTX1-6b +xref: EMAPA:35588 +xref: FMA:83138 +xref: MA:0000186 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +intersection_of: UBERON:0022303 ! nervous system cell part layer +intersection_of: part_of UBERON:0001950 ! neocortex +relationship: part_of UBERON:0001950 ! neocortex + +[Term] +id: UBERON:0002302 +name: myocardium of atrium +def: "the atrial part of middle layer of the heart, comprised of involuntary muscle" [ISBN:0-683-40008-8, MP:0010493] +subset: efo_slim +subset: pheno_slim +subset: vertebrate_core +synonym: "atrial myocardium" EXACT [ZFA:0001374] +synonym: "atrium cardiac muscle" RELATED [VHOG:0000602] +synonym: "atrium myocardium" EXACT [] +xref: EFO:0003087 +xref: EMAPA:32746 +xref: FMA:83509 +xref: http://www.snomedbrowser.com/Codes/Details/191910002 +xref: MA:0000081 +xref: TAO:0001374 +xref: VHOG:0000602 +xref: ZFA:0001374 +is_a: UBERON:0002349 ! myocardium +intersection_of: UBERON:0002349 ! myocardium +intersection_of: part_of UBERON:0002081 ! cardiac atrium +relationship: contributes_to_morphology_of UBERON:0002081 ! cardiac atrium +relationship: part_of UBERON:0002081 ! cardiac atrium + +[Term] +id: UBERON:0002303 +name: juxtaglomerular apparatus +def: "An anatomical structure which consists of juxtaglomerular cells, extraglomerular mesangial cells and the macula densa. The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate[GO]. a microscopic structure in the kidney, which regulates the function of each nephron. The juxtaglomerular apparatus is named for its proximity to the glomerulus: it is found between the vascular pole of the renal corpuscle and the returning distal convoluted tubule of the same nephron. This location is critical to its function in regulating renal blood flow and glomerular filtration rate. The three cellular components of the apparatus are the macula densa, extraglomerular mesangial cells, and juxtaglomerular cells (also known as granular cells)[WP]." [GO:0072206, http://en.wikipedia.org/wiki/Juxtaglomerular_apparatus] +subset: pheno_slim +subset: uberon_slim +synonym: "complexus juxtaglomerularis" EXACT LATIN [] +synonym: "juxtaglomerular complex" EXACT [MP:0002829] +xref: BTO:0005157 +xref: EMAPA:30449 +xref: FMA:83599 +xref: GAID:432 +xref: http://linkedlifedata.com/resource/umls/id/C0022445 +xref: http://www.snomedbrowser.com/Codes/Details/362219002 +xref: Juxtaglomerular:apparatus +xref: MA:0002546 +xref: MESH:D007606 +xref: NCIT:C32891 +xref: UMLS:C0022445 {source="ncithesaurus:Juxtaglomerular_Apparatus"} +is_a: UBERON:0000477 ! anatomical cluster +relationship: has_part UBERON:0002335 ! macula densa +relationship: part_of UBERON:0001225 {source="MA"} ! cortex of kidney + +[Term] +id: UBERON:0002304 +name: layer of dentate gyrus +def: "One of the three layers of the dentate gyrus of the hippocampal formation." [http://orcid.org/0000-0002-6601-2165, PMCID:PMC2492885] +synonym: "dentate gyrus cell layer" EXACT [] +synonym: "dentate gyrus layer" EXACT [] +xref: EMAPA:35278 +xref: FMA:83678 +xref: MA:0002429 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +intersection_of: UBERON:0022303 ! nervous system cell part layer +intersection_of: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation +relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation + +[Term] +id: UBERON:0002305 +name: layer of hippocampus +def: "The layers of the laminar structure of the hippocampus." [http://en.wikipedia.org/wiki/Hippocampus_anatomy#Hippocampal_Cells_and_Layers, MP:0000813] +subset: pheno_slim +synonym: "cytoarchitectural fields of hippocampal formation" EXACT [BIRNLEX:1192] +synonym: "hippocampus layer" EXACT [] +synonym: "hippocampus proper layer" RELATED [FMA:83679] +synonym: "layer of cornu ammonis" RELATED [FMA:83679] +xref: BIRNLEX:1192 +xref: EMAPA:35407 +xref: FMA:277842 +xref: FMA:83679 +xref: Hippocampal_Cells_and_Layers +xref: MA:0002427 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0016548 ! central nervous system gray matter layer +intersection_of: UBERON:0016548 ! central nervous system gray matter layer +intersection_of: part_of UBERON:0002421 ! hippocampal formation +relationship: contributes_to_morphology_of UBERON:0002421 ! hippocampal formation +relationship: part_of UBERON:0002421 ! hippocampal formation + +[Term] +id: UBERON:0002306 +name: nasal mucus +def: "mucus produced in the nasal cavity, by the respiratory segment of the nasal mucosa." [http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "respiratory mucus" RELATED [BTO:0003603] +xref: BTO:0003603 +xref: CALOHA:TS-0658 +xref: EMAPA:36552 +xref: FMA:83688 +xref: http://linkedlifedata.com/resource/umls/id/C0225392 +xref: MA:0002535 +xref: NCIT:C52551 +xref: Respiratory_system +xref: UMLS:C0225392 {source="ncithesaurus:Nasal_Mucus"} +is_a: UBERON:0016553 ! respiratory system mucus +intersection_of: UBERON:0000912 ! mucus +intersection_of: produced_by UBERON:0015786 ! respiratory segment of nasal mucosa +relationship: produced_by UBERON:0015786 ! respiratory segment of nasal mucosa + +[Term] +id: UBERON:0002307 +name: choroid plexus of lateral ventricle +def: "Part of choroid plexus contained in the lateral ventricle" [NLX:32548] +subset: vertebrate_core +synonym: "chorioid plexus of cerebral hemisphere of lateral ventricle" EXACT [OBOL:automatic] +synonym: "chorioid plexus of lateral ventricle" EXACT [] +synonym: "choroid plexus telencephalic ventricle" EXACT [ZFA:0001447] +synonym: "lateral ventricle chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] +synonym: "lateral ventricle choroid plexus" EXACT [] +xref: BAMS:cplv +xref: DHBA:10601 +xref: EHDAA2:0004449 +xref: EMAPA:17769 +xref: FMA:83711 +xref: HBA:9708 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=218 +xref: http://linkedlifedata.com/resource/umls/id/C0152289 +xref: http://www.snomedbrowser.com/Codes/Details/70064002 +xref: MA:0000961 +xref: NCIT:C32309 +xref: NLX:32548 +xref: TAO:0001447 +xref: UMLS:C0152289 {source="ncithesaurus:Choroid_Plexus_of_the_Lateral_Ventricle"} +xref: VHOG:0001376 +xref: ZFA:0001447 +is_a: UBERON:0001886 ! choroid plexus +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001886 ! choroid plexus +intersection_of: part_of UBERON:0002285 ! telencephalic ventricle +relationship: part_of UBERON:0002285 ! telencephalic ventricle + +[Term] +id: UBERON:0002308 +name: nucleus of brain +def: "A neural nucleus that is part of the brain." [http://orcid.org/0000-0002-6601-2165] +synonym: "brain nuclei" RELATED PLURAL [ZFA:0005575] +synonym: "brain nucleus" EXACT [] +xref: EMAPA:35185 +xref: FMA:83840 +xref: http://linkedlifedata.com/resource/umls/id/C1706993 +xref: http://www.snomedbrowser.com/Codes/Details/426465002 +xref: MA:0000811 +xref: NCIT:C49346 +xref: UMLS:C1706993 {source="ncithesaurus:Brain_Nucleus"} +xref: ZFA:0005575 +is_a: UBERON:0000125 ! neural nucleus +intersection_of: UBERON:0000125 ! neural nucleus +intersection_of: part_of UBERON:0000955 ! brain +relationship: part_of UBERON:0003528 ! brain gray matter + +[Term] +id: UBERON:0002309 +name: medial longitudinal fasciculus +def: "The medial longitudinal fasciculus (MLF) is a pair of crossed fiber tracts, one on each side of the brainstem. These bundles of axons are situated near the midline of the brainstem and are composed of both ascending and descending fibers that arise from a number of sources and terminate in different areas. [WP,unvetted]." [http://en.wikipedia.org/wiki/Medial_longitudinal_fasciculus] +subset: uberon_slim +subset: vertebrate_core +synonym: "fasciculus longitudinalis medialis" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_longitudinal_fasciculus] +synonym: "medial longitudinal fascicle" RELATED [BAMS:mlf] +synonym: "MLF" RELATED [ZFA:0000543] +xref: BAMS:mlf +xref: BTO:0003951 +xref: DHBA:12764 +xref: FMA:83846 +xref: HBA:9351 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1588 +xref: http://en.wikipedia.org/wiki/Medial_longitudinal_fasciculus +xref: http://www.snomedbrowser.com/Codes/Details/362397001 +xref: MBA:62 +xref: TAO:0000543 +xref: ZFA:0000543 +is_a: UBERON:0005838 ! fasciculus of brain + +[Term] +id: UBERON:0002310 +name: hippocampus fimbria +def: "Regional part of fornix consisting of a prominent white matter structure adjacent to the hippocampus on the ventricular side continuous with the alveus. Near the splenium the fimbria separates from the hippocampus as the crus of the fornix. [adapted from Wikipedia] (MM: 2006-10-26)." [BIRNLEX:1502] +subset: pheno_slim +synonym: "fimbria" BROAD [BIRNLEX:1502] +synonym: "fimbria (Vieussens)" RELATED [NeuroNames:187] +synonym: "fimbria fornicis" RELATED LATIN [NeuroNames:187] +synonym: "fimbria hippocampi" RELATED LATIN [NeuroNames:187] +synonym: "fimbria hippocampi" RELATED LATIN [http://en.wikipedia.org/wiki/Fimbria_of_hippocampus] +synonym: "fimbria hippocampus" EXACT [] +synonym: "fimbria of fornix" RELATED [NeuroNames:187] +synonym: "fimbria of hippocampus" EXACT [FMA:83866] +synonym: "fimbria of the fornix" EXACT [BIRNLEX:1502] +synonym: "fimbria of the hippocampus" RELATED [NeuroNames:187] +synonym: "fimbria-fornix" EXACT [BIRNLEX:1502] +synonym: "hippocampal fimbria" EXACT [MP:0009324] +synonym: "neuraxis fimbria" EXACT [] +xref: BAMS:FI +xref: BAMS:fi +xref: BIRNLEX:1502 +xref: BM:Tel-FI +xref: DHBA:10575 +xref: DMBA:17766 +xref: EMAPA:35345 +xref: FMA:83866 +xref: HBA:9253 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=187 {source="BIRNLEX:1502"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=187 +xref: http://en.wikipedia.org/wiki/Fimbria_of_hippocampus +xref: http://linkedlifedata.com/resource/umls/id/C0152315 +xref: http://www.snomedbrowser.com/Codes/Details/369096000 +xref: MA:0000949 +xref: MBA:603 +xref: NCIT:C32606 +xref: UMLS:C0152315 {source="BIRNLEX:1502"} +xref: UMLS:C0152315 {source="ncithesaurus:Fimbria"} +is_a: UBERON:0011215 ! central nervous system cell part cluster +relationship: part_of UBERON:0000052 {notes="Need to determine whether the fimbria is part of the fornix. Sometimes the language suggests it isn't always thought of that way, but I see no useful reason why it should be separate; it all forms one continuous white matter tract. Neuronames and others include this as part of the hippocampal formation (MM)", source="NIFSTD"} ! fornix of brain +relationship: part_of UBERON:0001954 {source="MA", source="NIFSTD"} ! Ammon's horn +relationship: part_of UBERON:0011299 ! white matter of telencephalon + +[Term] +id: UBERON:0002311 +name: obsolete nodulus of cerebellum +comment: obsoleted based on http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=681 +is_obsolete: true +replaced_by: UBERON:0004083 + +[Term] +id: UBERON:0002313 +name: hippocampus pyramidal layer +alt_id: UBERON:0005369 +def: "A cytoarchitectural term denoting the layer of the hippocampus in which pyramidal cells are predominant. Its location is superficial to the Stratum oriens; it is deep to the Stratum radiatum in area CA1 and area CA2 and deep to the Stratum lucidum in area CA3 (Stephan-75) (NeuroNames)." [BIRNLEX:1444] +subset: pheno_slim +synonym: "gyrus occipitalis inferior" RELATED LATIN [NeuroNames:156] +synonym: "gyrus occipitalis tertius" RELATED LATIN [NeuroNames:156] +synonym: "hippocampal pyramidal cell layer" RELATED [] +synonym: "hippocampal pyramidal layer" RELATED [] +synonym: "hippocampus pyramidal cell layer" RELATED [] +synonym: "hippocampus stratum pyramidale" RELATED [] +synonym: "pyramidal cell layer of the hippocampus" EXACT [BIRNLEX:1444] +synonym: "pyramidal layer of hippocampus" EXACT [FMA:83895] +synonym: "stratum pyramidale" EXACT [BIRNLEX:1444] +synonym: "stratum pyramidale hippocampi" EXACT [BIRNLEX:1444] +xref: BAMS:Py +xref: BIRNLEX:1444 +xref: BTO:0001066 +xref: EMAPA:35409 +xref: FMA:83895 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=156 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=156 {source="BIRNLEX:1444"} +xref: MA:0000956 +is_a: UBERON:0002305 ! layer of hippocampus +intersection_of: UBERON:0002305 ! layer of hippocampus +intersection_of: deep_to UBERON:0007637 ! hippocampus stratum lucidum +intersection_of: immediately_superficial_to UBERON:0005371 ! hippocampus stratum oriens +relationship: deep_to UBERON:0007637 ! hippocampus stratum lucidum +relationship: immediately_superficial_to UBERON:0005371 ! hippocampus stratum oriens + +[Term] +id: UBERON:0002314 +name: midbrain tectum +def: "Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei (MM)." [BIRNLEX:1032] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "mesencephalic tectum" EXACT [ZFA:0000445] +synonym: "neuraxis tectum" EXACT [] +synonym: "t. mesencephali" RELATED LATIN [http://en.wikipedia.org/wiki/Midbrain_tectum] +synonym: "tectum" EXACT [] +synonym: "tectum mesencephali" EXACT [BTO:0001793] +synonym: "tectum mesencephalicum" RELATED LATIN [NeuroNames:465] +synonym: "tectum of midbrain" RELATED [NeuroNames:465] +xref: BAMS:MTec +xref: BAMS:Tec +xref: BIRNLEX:1032 +xref: BM:MB-Tec +xref: BTO:0001793 +xref: DHBA:12291 +xref: EFO:0000920 +xref: EHDAA2:0004474 +xref: EMAPA:19051 +xref: FMA:83902 +xref: HBA:9101 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=465 {source="BIRNLEX:1032"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=465 +xref: http://linkedlifedata.com/resource/umls/id/C0039433 +xref: http://www.snomedbrowser.com/Codes/Details/362394008 +xref: MA:0000211 +xref: MAT:0000451 +xref: Midbrain:tectum +xref: NCIT:C12460 +xref: TAO:0001353 +xref: UMLS:C0039433 {source="ncithesaurus:Tectum_Mesencephali"} +xref: UMLS:C0039433 {source="BIRNLEX:1032"} +xref: VHOG:0001388 +is_a: UBERON:0002616 ! regional part of brain +relationship: develops_from UBERON:0005882 {source="Wikipedia"} ! neural tube alar plate +relationship: part_of UBERON:0001891 ! midbrain + +[Term] +id: UBERON:0002315 +name: gray matter of spinal cord +def: "The ridge-shaped grey matter of the spinal cord that extends longitudunally through the center of each half of the spinal cord, and are largely or entirely composed of nerve cell bodies and their dendrites and some supportive tissue." [MP:0008503] +subset: pheno_slim +synonym: "gray matter of spinal cord" EXACT [OBOL:automatic] +synonym: "gray substance of spinal cord" EXACT [FMA:256580] +synonym: "grey matter of spinal cord" EXACT [] +synonym: "grey substance of spinal cord" EXACT [] +synonym: "spinal cord gray matter" EXACT [OBOL:automatic] +synonym: "spinal cord grey matter" EXACT [] +synonym: "spinal cord grey substance" EXACT [OBOL:automatic] +synonym: "substantia grisea medullae spinalis" EXACT LATIN [FMA:256580, FMA:TA] +xref: BAMS:Scgrey +xref: DHBA:146035048 +xref: EMAPA:35792 +xref: FMA:256580 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2619 +xref: http://linkedlifedata.com/resource/umls/id/C0475853 +xref: http://www.snomedbrowser.com/Codes/Details/279441003 +xref: MA:0000002 +xref: NCIT:C32696 +xref: NLXANAT:100204 +xref: UMLS:C0475853 {source="ncithesaurus:Gray_Matter_of_the_Spinal_Cord"} +is_a: UBERON:0002020 ! gray matter +intersection_of: UBERON:0002020 ! gray matter +intersection_of: part_of UBERON:0002240 ! spinal cord +relationship: contributes_to_morphology_of UBERON:0002240 ! spinal cord +relationship: part_of UBERON:0002240 ! spinal cord + +[Term] +id: UBERON:0002316 +name: white matter +def: "Neural tissue consisting of myelinated axons connecting grey matter areas of the central nervous system." [http://en.wikipedia.org/wiki/White_matter, https://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +subset: vertebrate_core +synonym: "CNS tract/commissure" EXACT [ZFA:0001682] +synonym: "CNS tracts and commissures" RELATED [TAO:0000145] +synonym: "CNS white matter" RELATED [TAO:0002143] +synonym: "neuronal white matter" EXACT [AEO:0001011] +synonym: "substantia alba" RELATED LATIN [http://en.wikipedia.org/wiki/White_matter] +synonym: "white mater" RELATED [VHOG:0001764] +synonym: "white matter of neuraxis" EXACT [FMA:83929] +synonym: "white substance" EXACT [] +xref: AEO:0000139 +xref: AEO:0001011 +xref: EMAPA:35927 +xref: FMA:83929 +xref: HBA:9218 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2870 +xref: http://linkedlifedata.com/resource/umls/id/C0682708 +xref: MA:0001135 +xref: NCIT:C33892 +xref: NLX:412 +xref: NLXANAT:101177 +xref: OpenCyc:Mx4rwOAsDZwpEbGdrcN5Y29ycA +xref: PBA:294022044 +xref: TAO:0000145 +xref: TAO:0002142 +xref: TAO:0002143 +xref: UMLS:C0682708 {source="ncithesaurus:White_Matter"} +xref: VHOG:0001764 +xref: White:matter +xref: ZFA:0001682 +is_a: UBERON:0011215 ! central nervous system cell part cluster +relationship: composed_primarily_of UBERON:0006135 ! myelinated nerve fiber + +[Term] +id: UBERON:0002317 +name: white matter of cerebellum +def: "Regional part of cerebellum consisting of the myelinated axons lying deep to the granule cell layer, excluding the deep cerebellar nuclei and the cerebellar peduncles." [BIRNLEX:1562] +subset: pheno_slim +subset: vertebrate_core +synonym: "cerebellar tracts/commissures" RELATED PLURAL [ZFA:0001708] +synonym: "cerebellar white matter" EXACT [] +synonym: "cerebellum white matter" EXACT [] +synonym: "medullary substance of cerebellum" RELATED [NeuroNames:691] +synonym: "substantia centralis medullaris cerebelli" RELATED LATIN [NeuroNames:691] +synonym: "substantia medullaris cerebelli" RELATED LATIN [NeuroNames:691] +xref: BAMS:CB-white +xref: BAMS:cbw +xref: BIRNLEX:1562 +xref: DMBA:16926 +xref: EMAPA:35235 +xref: FMA:83943 +xref: HBA:9288 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=691 {source="BIRNLEX:1562"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=691 +xref: http://linkedlifedata.com/resource/umls/id/C0152381 +xref: http://www.snomedbrowser.com/Codes/Details/362412009 +xref: MA:0002430 +xref: NCIT:C49217 +xref: TAO:0002183 +xref: UMLS:C0152381 {source="ncithesaurus:Cerebellum_White_Matter"} +xref: UMLS:C0152381 {source="BIRNLEX:1562"} +xref: ZFA:0001708 +is_a: UBERON:0002316 ! white matter + +[Term] +id: UBERON:0002318 +name: white matter of spinal cord +def: "The regions of the spinal cord that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008027] +subset: pheno_slim +synonym: "spinal cord white matter" EXACT [] +synonym: "spinal cord white matter of neuraxis" EXACT [OBOL:automatic] +synonym: "spinal cord white substance" EXACT [OBOL:automatic] +synonym: "substantia alba medullae spinalis" EXACT LATIN [FMA:83945, FMA:TA] +synonym: "white matter of neuraxis of spinal cord" EXACT [OBOL:automatic] +synonym: "white substance of spinal cord" EXACT [OBOL:automatic] +xref: BAMS:SCwhite +xref: DHBA:146035088 +xref: EMAPA:35795 +xref: FMA:83945 +xref: http://linkedlifedata.com/resource/umls/id/C0458457 +xref: http://www.snomedbrowser.com/Codes/Details/279436006 +xref: MA:0000910 +xref: NCIT:C33893 +xref: UMLS:C0458457 {source="ncithesaurus:White_Matter_of_the_Spinal_Cord"} +is_a: UBERON:0002316 ! white matter +intersection_of: UBERON:0002316 ! white matter +intersection_of: part_of UBERON:0002240 ! spinal cord +relationship: contributes_to_morphology_of UBERON:0002240 ! spinal cord +relationship: part_of UBERON:0002240 ! spinal cord + +[Term] +id: UBERON:0002319 +name: mesangium +def: "The inner layer of the glomerulus, within the basement membrane surrounding the glomerular capillaries." [http://en.wikipedia.org/wiki/Mesangium, https://sourceforge.net/p/obo/foundational-model-of-anatomy-fma-requests/13/] +subset: pheno_slim +subset: uberon_slim +xref: BTO:0002494 +xref: EMAPA:28248 +xref: EMAPA:36561 {source="MA:th"} +xref: FMA:84139 +xref: http://en.wikipedia.org/wiki/Mesangium +xref: http://linkedlifedata.com/resource/umls/id/C0017655 +xref: MA:0002617 +xref: NCIT:C33101 +xref: UMLS:C0017655 {source="ncithesaurus:Mesangium"} +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: located_in UBERON:0005777 ! glomerular basement membrane +relationship: part_of UBERON:0000074 ! renal glomerulus +relationship: part_of UBERON:0005215 ! kidney interstitium +relationship: surrounds UBERON:0004212 ! glomerular capillary + +[Term] +id: UBERON:0002320 +name: glomerular mesangium +def: "A thin membrane which helps to support the capillary loops in a renal glomerulus. It is connective tissue composed of mesangial cells - myofibroblasts phenotypically related to vascular smooth muscle cells (muscle, smooth, vascular), phagocytes and the mesangial extracellular matrix." [http://en.wikipedia.org/wiki/Glomerular_mesangium, MESH:A05.810.453.736.520.380] +subset: pheno_slim +subset: uberon_slim +xref: EMAPA:27961 +xref: EMAPA:28248 +xref: FMA:84140 +xref: GAID:430 +xref: Glomerular:mesangium +xref: http://www.snomedbrowser.com/Codes/Details/244574009 +xref: MA:0002606 +xref: MESH:A05.810.453.736.520.380 +is_a: UBERON:0003891 ! stroma +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: contributes_to_morphology_of UBERON:0000074 ! renal glomerulus +relationship: part_of UBERON:0002319 ! mesangium +relationship: part_of UBERON:0004190 {source="GO"} ! renal glomerulus vasculature + +[Term] +id: UBERON:0002321 +name: extraglomerular mesangium +def: "the tissue comprised of mesangial cells that fill the triangular space between the macula densa and the afferent and efferent arterioles of the juxtaglomerular apparatus" [ISBN:0-683-40008-8, MP:0011340] +subset: pheno_slim +xref: EMAPA:28278 +xref: FMA:84141 +xref: MA:0002602 +is_a: UBERON:0003891 ! stroma +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0002303 {source="MA"} ! juxtaglomerular apparatus +relationship: part_of UBERON:0002319 {source="MA"} ! mesangium + +[Term] +id: UBERON:0002322 +name: periventricular nucleus +def: "a thin sheet of small neurons located in the wall of the third ventricle, a composite structure of the hypothalamus." [http://en.wikipedia.org/wiki/Periventricular_nucleus] +subset: uberon_slim +subset: vertebrate_core +synonym: "periventricular nuclei" RELATED PLURAL [ZFA:0000260] +synonym: "ventral zone of periventricular hypothalamus" EXACT [ZFA:0000260] +xref: FMA:84354 +xref: Periventricular:nucleus +xref: TAO:0000260 +xref: ZFA:0000260 +is_a: UBERON:0002308 ! nucleus of brain + +[Term] +id: UBERON:0002323 +name: coelemic cavity lumen +alt_id: UBERON:0000169 +def: "The cavity within the body of all animals higher than the coelenterates and certain primitive worms, formed by the splitting of the embryonic mesoderm into two layers. In mammals it forms the peritoneal, pleural, and pericardial cavities." [BTO:0001707] +subset: uberon_slim +subset: vertebrate_core +synonym: "body cavity" BROAD [BTO:0001707] +synonym: "celom" RELATED [BTO:0001707] +synonym: "coelom" RELATED [] +synonym: "coelome" RELATED [BTO:0001707] +synonym: "coelomic cavity" EXACT [EHDAA2:0000267] +synonym: "coelomic cavity lumen" EXACT [EHDAA2:0000267] +synonym: "hemocoel" RELATED [FBbt:00005060] +synonym: "main body cavity" EXACT [] +synonym: "space of body compartment" EXACT [FMA:85006] +synonym: "ventral body cavity" NARROW [NCBITaxon:7742] +xref: AEO:0000186 +xref: BTO:0001707 +xref: EHDAA2:0000267 +xref: FBbt:00005060 +xref: FMA:85006 +xref: galen:BodyCavity +xref: http://linkedlifedata.com/resource/umls/id/C0333343 +xref: http://www.snomedbrowser.com/Codes/Details/361348008 +xref: NCIT:C25444 +xref: RETIRED_EHDAA2:0003186 +xref: TAO:0001438 +xref: UMLS:C0333343 {source="ncithesaurus:Cavity"} +xref: ZFA:0001438 +is_a: UBERON:0002553 ! anatomical cavity +relationship: develops_from UBERON:0003886 ! future coelemic cavity lumen +relationship: luminal_space_of UBERON:0011997 ! coelom +relationship: part_of UBERON:0011997 ! coelom +relationship: transformation_of UBERON:0003886 {evidence="definitional"} ! future coelemic cavity lumen + +[Term] +id: UBERON:0002324 +name: muscle of back +def: "Any muscle organ that is part of a back [Automatically generated definition]." [OBOL:automatic] +synonym: "back muscle" EXACT [] +synonym: "back muscle organ" EXACT [OBOL:automatic] +synonym: "muscle organ of back" EXACT [OBOL:automatic] +xref: EMAPA:35161 +xref: FMA:85216 +xref: MA:0000496 +is_a: UBERON:0001774 ! skeletal muscle of trunk +is_a: UBERON:0005174 ! dorsal region element +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0001137 ! dorsum +relationship: part_of UBERON:0004469 {source="prolog"} ! musculature of back + +[Term] +id: UBERON:0002325 +name: epithelium of urethra +def: "The urethra is a renal system organ that carries urine from the bladder to outside the body. The epithelium is the tubular, planar layer of cells through which the urine passes.." [GO:0061071] +synonym: "epithelial tissue of urethra" EXACT [OBOL:automatic] +synonym: "urethra epithelial tissue" EXACT [OBOL:automatic] +synonym: "urethra epithelium" EXACT [] +synonym: "urethral epithelium" RELATED [] +synonym: "urethral plate" RELATED [EMAPA:31518] +synonym: "urethral seam" RELATED [EMAPA:31518] +xref: EMAPA:31518 +xref: FMA:85275 +xref: http://linkedlifedata.com/resource/umls/id/C1710584 +xref: MA:0001686 +xref: NCIT:C49309 +xref: UMLS:C1710584 {source="ncithesaurus:Urethra_Epithelium"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0003914 {source="GO"} ! epithelial tube +is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0006555 ! excretory tube +is_a: UBERON:0012275 ! meso-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000057 ! urethra +relationship: part_of UBERON:0000057 ! urethra + +[Term] +id: UBERON:0002326 +name: lamina propria of urethra +def: "A lamina propria that is part of a urethra [Automatically generated definition]." [OBOL:automatic] +synonym: "lamina propria mucosa of urethra" EXACT [OBOL:automatic] +synonym: "lamina propria mucosae of urethra" EXACT [OBOL:automatic] +synonym: "urethra lamina propria" EXACT [] +synonym: "urethra lamina propria mucosa" EXACT [OBOL:automatic] +synonym: "urethra lamina propria mucosae" EXACT [OBOL:automatic] +synonym: "urethral lamina propria" RELATED [] +xref: EMAPA:37785 {source="MA:th"} +xref: FMA:85276 +xref: MA:0001689 +is_a: UBERON:0000030 ! lamina propria +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0000030 ! lamina propria +intersection_of: part_of UBERON:0000057 ! urethra +relationship: part_of UBERON:0000057 ! urethra + +[Term] +id: UBERON:0002327 +name: trunk of intercostal nerve +synonym: "intercostal nerve trunk" EXACT [] +synonym: "intercostal neural trunk" EXACT [] +xref: EMAPA:18227 +xref: EMAPA:37720 {source="MA:th"} +xref: FMA:85315 +xref: MA:0001176 +is_a: UBERON:0005476 ! spinal nerve trunk +intersection_of: UBERON:0002464 ! nerve trunk +intersection_of: part_of UBERON:0003727 ! intercostal nerve +relationship: part_of UBERON:0003727 ! intercostal nerve + +[Term] +id: UBERON:0002328 +name: notochord +def: "A flexible rod-shaped body found in embryos of all chordates. It is composed of cells derived from the mesoderm and defines the primitive axis of the embryo. In some chordates, it persists throughout life as the main axial support of the body, while in most vertebrates it becomes the nucleus pulposus of the intervertebral disc. The notochord is found ventral to the neural tube." [http://en.wikipedia.org/wiki/Notochord, http://tolweb.org/Chordata/2499, https://github.com/obophenotype/uberon/issues/25, https://github.com/obophenotype/uberon/issues/271, ISBN:0815318960] +comment: The notochord appears early in embryogeny and plays an important role in promoting or organizing the embryonic development of nearby structures. In most adult chordates the notochord disappears or becomes highly modified. In some non-vertebrate chordates and fishes the notochord persists as a laterally flexible but incompressible skeletal rod that prevents telescopic collapse of the body during swimming[TOLWEB] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "embryonic notocord" EXACT [] +synonym: "notochorda" RELATED LATIN [http://en.wikipedia.org/wiki/Notochord] +synonym: "notocord" EXACT [ZFA:0000135] +xref: AAO:0000327 +xref: BTO:0001768 +xref: CALOHA:TS-0690 +xref: EHDAA2:0001277 +xref: EHDAA:1241 +xref: EHDAA:6021 +xref: EMAPA:16191 +xref: EV:0100002 +xref: FMA:85521 +xref: GAID:1311 +xref: http://en.wikipedia.org/wiki/Notochord +xref: http://evolution.berkeley.edu/evolibrary/images/history/notochords.jpg +xref: http://linkedlifedata.com/resource/umls/id/C0028439 +xref: http://www.snomedbrowser.com/Codes/Details/308820002 +xref: MAT:0000281 +xref: MESH:A16.254.610 +xref: NCIT:C12463 +xref: TAO:0000135 +xref: UMLS:C0028439 {source="ncithesaurus:Notochord"} +xref: VHOG:0000199 +xref: VSAO:0000032 +xref: XAO:0000055 +xref: ZFA:0000135 +is_a: UBERON:0000481 {source="VSAO"} ! multi-tissue structure +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/wdahdul +relationship: develops_from UBERON:0004880 {source="ZFA"} ! chordamesoderm +relationship: develops_from UBERON:0006267 {source="EHDAA2"} ! notochordal plate +relationship: dorsal_to UBERON:0001555 ! digestive tract +relationship: existence_starts_during UBERON:0000068 ! embryo stage +relationship: part_of UBERON:0011137 ! axial skeletal system +relationship: ventral_to UBERON:0001049 ! neural tube + +[Term] +id: UBERON:0002329 +name: somite +def: "Somites are spheres of epithelial cells that form sequentially along the anterior-posterior axis of the embryo through mesenchymal to epithelial transition of the presomitic mesoderm." [http://en.wikipedia.org/wiki/Somite, https://doi.org/10.1111/j.1439-0426.2012.01987.x] +comment: When the somite becomes segmented from the segmental plate, it is composed of an epithelial sac enclosing mesenchymal somitocoel cells. Thereafter the somite differentiates into two parts, the ventro-medial mesenchymal sclerotome and the dorso-lateral epithelial dermomyotome. This change in the epithelial somite depends on surrounding tissue [PMID:15906248] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "epimere" RELATED [ISBN:0073040584] +synonym: "epimere mesoderm" RELATED [] +synonym: "epithelial somite" RELATED [https://github.com/obophenotype/uberon/wiki/The-neural-crest] +synonym: "mesodermal cluster" BROAD [GO:0001756] +synonym: "somites" RELATED PLURAL [] +synonym: "somitic mesoderm" RELATED [] +synonym: "somitus" RELATED LATIN [http://en.wikipedia.org/wiki/Somite] +xref: AAO:0010569 +xref: AEO:0001015 +xref: BTO:0001558 +xref: EHDAA2:0003436 +xref: EHDAA:366 +xref: EHDAA:699 +xref: EMAPA:31169 +xref: FMA:85522 +xref: GAID:1306 +xref: http://en.wikipedia.org/wiki/Somite +xref: http://linkedlifedata.com/resource/umls/id/C0376449 +xref: MAT:0000068 +xref: MESH:A16.254.425.660.750 +xref: MIAA:0000068 +xref: NCIT:C34302 +xref: TAO:0000155 +xref: UMLS:C0376449 {source="ncithesaurus:Somite"} +xref: VHOG:0000191 +xref: XAO:0000058 +xref: ZFA:0000155 +is_a: UBERON:0005423 ! developing anatomical structure +is_a: UBERON:0007503 {source="EHDAA2"} ! epithelial vesicle +relationship: develops_from UBERON:0003059 {source="ZFA"} ! presomitic mesoderm + +[Term] +id: UBERON:0002330 +name: exocrine system +def: "Anatomical system that consists of the glands and parts of glands that produce exocrine secretions and help to integrate and control bodily metabolic activity. Exocrine glands are glands that secrete their products (hormones) into ducts (duct glands). They are the counterparts to endocrine glands, which secrete their products (hormones) directly into the bloodstream (ductless glands) or release hormones (paracrines) that affect only target cells nearby the release site. [Wikipedia]." [http://en.wikipedia.org/wiki/Exocrine_gland] +subset: pheno_slim +subset: uberon_slim +synonym: "exocrine glandular system" EXACT [EHDAA2:0002225] +xref: CALOHA:TS-2057 +xref: EHDAA2:0002225 +xref: EMAPA:35329 +xref: Exocrine:gland +xref: FMA:85539 +xref: http://linkedlifedata.com/resource/umls/id/C1516995 +xref: MA:0002411 +xref: NCIT:C12957 +xref: UMLS:C1516995 {source="ncithesaurus:Exocrine_System"} +xref: WikipediaCategory:Exocrine_system +is_a: UBERON:0000467 ! anatomical system +disjoint_from: UBERON:0002390 ! hematopoietic system +disjoint_from: UBERON:0002405 ! immune system +disjoint_from: UBERON:0002416 ! integumental system +disjoint_from: UBERON:0002423 ! hepatobiliary system +disjoint_from: UBERON:0004456 ! entire sense organ system +relationship: composed_primarily_of UBERON:0002365 ! exocrine gland +relationship: existence_ends_during UBERON:0000066 ! fully formed stage + +[Term] +id: UBERON:0002331 +name: umbilical cord +def: "The connecting cord from the developing embryo to the placenta." [http://en.wikipedia.org/wiki/Umbilical_cord, http://www.ncbi.nlm.nih.gov/pubmed/9144284, ISBN:0-683-40008-8, MP:0001725] +comment: See notes for connecting stalk +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "birth cord" RELATED [http://en.wikipedia.org/wiki/Umbilical_cord] +synonym: "chorda umbilicalis" EXACT LATIN [MP:0012134] +synonym: "connecting stalk" RELATED [] +synonym: "funiculus umbilicalis" EXACT LATIN [MP:0012134] +synonym: "funiculus umbilicalis" RELATED LATIN [http://en.wikipedia.org/wiki/Umbilical_cord] +synonym: "yolk stalk" RELATED [BTO:0001415] +xref: BTO:0001415 +xref: CALOHA:TS-1078 +xref: EFO:0001415 +xref: EHDAA2:0000312 +xref: EHDAA:158 +xref: EMAPA:26115 +xref: EV:0100127 +xref: FMA:85541 +xref: GAID:517 +xref: http://linkedlifedata.com/resource/umls/id/C0041633 +xref: http://www.snomedbrowser.com/Codes/Details/280644003 +xref: MAT:0000280 +xref: MESH:A16.254.789 +xref: MIAA:0000280 +xref: NCIT:C34320 +xref: OpenCyc:Mx4rvyewDJwpEbGdrcN5Y29ycA +xref: Umbilical:cord +xref: UMLS:C0041633 {source="ncithesaurus:Umbilical_Cord"} +is_a: UBERON:0000478 ! extraembryonic structure +relationship: connects UBERON:0000922 ! embryo +relationship: connects UBERON:0001987 ! placenta +relationship: develops_from UBERON:0007806 ! connecting stalk + +[Term] +id: UBERON:0002333 +name: pulmonary trunk +def: "An arterial trunk which is continuous with the heart and branches into the pulmonary arteries." [http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "main pulmonary artery" RELATED [http://en.wikipedia.org/wiki/Pulmonary_artery] +synonym: "pulmonary artery (trunk)" EXACT [] +synonym: "trunk of pulmonary arterial tree" EXACT [] +xref: EHDAA2:0001576 +xref: EHDAA:9831 +xref: EMAPA:17015 +xref: FMA:8612 +xref: galen:PulmonaryTrunk +xref: MA:0002033 +xref: NCIT:C116918 +xref: OpenCyc:Mx4rv-6d0ZwpEbGdrcN5Y29ycA +xref: VHOG:0001134 +is_a: UBERON:0001637 {source="MA"} ! artery +relationship: continuous_with UBERON:0000948 ! heart +relationship: part_of UBERON:0008886 ! pulmonary vascular system + +[Term] +id: UBERON:0002334 +name: submandibular duct +def: "the duct of the submadibular gland that opens at the sublingual papilla near the frenulum of the tongue" [ISBN:0-683-40008-8, MP:0009525] +subset: pheno_slim +subset: uberon_slim +synonym: "ductus submandibularis" RELATED [BTO:0004556] +synonym: "ductus submaxillaris" RELATED LATIN [http://en.wikipedia.org/wiki/Submandibular_duct] +synonym: "submandibular salivary duct" RELATED [] +synonym: "submaxillar gland duct" RELATED [BTO:0004556] +synonym: "submaxillary duct" RELATED [] +synonym: "Wharton's duct" RELATED INCONSISTENT [FMA:59899, http://en.wikipedia.org/wiki/Submandibular_duct] +xref: BTO:0004556 +xref: EMAPA:35833 +xref: FMA:86266 +xref: http://linkedlifedata.com/resource/umls/id/C0227472 +xref: http://www.snomedbrowser.com/Codes/Details/181237009 +xref: MA:0002698 +xref: NCIT:C33649 +xref: Submandibular:duct +xref: UMLS:C0227472 {source="ncithesaurus:Submandibular_Duct"} +is_a: UBERON:0001837 ! duct of salivary gland +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001837 ! duct of salivary gland +intersection_of: part_of UBERON:0001736 ! submandibular gland +relationship: channels_from UBERON:0001736 ! submandibular gland +relationship: contributes_to_morphology_of UBERON:0001736 ! submandibular gland +relationship: part_of UBERON:0001736 ! submandibular gland + +[Term] +id: UBERON:0002335 +name: macula densa +def: "The macula densa is an area of specialized cells in the distal tubule that makes contact with the vascular pole of the glomerulus[GO]." [GO:0072024, http://en.wikipedia.org/wiki/Macula_densa] +subset: pheno_slim +subset: uberon_slim +xref: BTO:0003940 +xref: EMAPA:28399 +xref: FMA:86333 +xref: http://linkedlifedata.com/resource/umls/id/C0227662 +xref: http://www.snomedbrowser.com/Codes/Details/244657003 +xref: MA:0002603 +xref: Macula:densa +xref: NCIT:C33043 +xref: UMLS:C0227662 {source="ncithesaurus:Macula_Densa"} +is_a: UBERON:0004211 ! nephron epithelium +relationship: part_of UBERON:0002303 {source="MA"} ! juxtaglomerular apparatus +relationship: part_of UBERON:0004135 {source="GO"} ! distal tubule + +[Term] +id: UBERON:0002336 +name: corpus callosum +def: "White matter structure containing massive numbers of commissural fibers connecting cortical areas in the two cerebral hemispheres.it is subdivided into a genu, a rostrum, a body, and a splenium. (MM)" [BIRNLEX:1087] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +xref: BAMS:CC +xref: BAMS:cc +xref: BIRNLEX:1087 +xref: BM:Tel-CC +xref: BTO:0000615 +xref: CALOHA:TS-0180 +xref: Corpus:callosum +xref: DHBA:10561 +xref: EFO:0001390 +xref: EMAPA:35253 +xref: EV:0100305 +xref: FMA:86464 +xref: GAID:683 +xref: HBA:9222 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=191 +xref: http://linkedlifedata.com/resource/umls/id/C0010090 +xref: http://www.snomedbrowser.com/Codes/Details/362354006 +xref: MA:0000188 +xref: MAT:0000286 +xref: MBA:776 +xref: MESH:A08.186.211.730.885.362 +xref: MIAA:0000286 +xref: NCIT:C12446 +xref: OpenCyc:Mx4rvbNzdZwpEbGdrcN5Y29ycA +xref: UMLS:C0010090 {source="ncithesaurus:Corpus_Callosum"} +xref: UMLS:C0010090 {source="BIRNLEX:1087"} +xref: VHOG:0001608 +is_a: UBERON:0002473 {source="FMA-part_of", source="MA"} ! intercerebral commissure +is_a: UBERON:0005340 {source="MP"} ! dorsal telencephalic commissure +relationship: contributes_to_morphology_of UBERON:0001893 ! telencephalon + +[Term] +id: UBERON:0002337 +name: endometrial stroma +def: "The layer of connective tissue comprised of the endometrial lining of the uterus which fluctuates in thickness throughout the menstrual cycle." [ncithesaurus:Endometrial_Stroma] +synonym: "endometrium stroma" EXACT [] +synonym: "stroma of endometrium" EXACT [] +xref: CALOHA:TS-1266 +xref: EMAPA:35310 +xref: FMA:86487 +xref: http://linkedlifedata.com/resource/umls/id/C0227849 +xref: http://www.snomedbrowser.com/Codes/Details/254115004 +xref: MA:0002734 +xref: NCIT:C32516 +xref: UMLS:C0227849 {source="ncithesaurus:Endometrial_Stroma"} +is_a: UBERON:0003891 ! stroma +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0003891 ! stroma +intersection_of: part_of UBERON:0001295 ! endometrium +relationship: part_of UBERON:0001295 ! endometrium + +[Term] +id: UBERON:0002338 +name: lamina propria of bronchus +def: "A lamina propria that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchi lamina propria" EXACT [OBOL:automatic] +synonym: "bronchi lamina propria mucosa" EXACT [OBOL:automatic] +synonym: "bronchi lamina propria mucosae" EXACT [OBOL:automatic] +synonym: "bronchial lamina propria" RELATED [EMAPA:35194] +synonym: "bronchial trunk lamina propria" EXACT [OBOL:automatic] +synonym: "bronchial trunk lamina propria mucosa" EXACT [OBOL:automatic] +synonym: "bronchial trunk lamina propria mucosae" EXACT [OBOL:automatic] +synonym: "bronchus lamina propria" EXACT [] +synonym: "bronchus lamina propria mucosa" EXACT [OBOL:automatic] +synonym: "bronchus lamina propria mucosae" EXACT [OBOL:automatic] +synonym: "lamina propria mucosa of bronchi" EXACT [OBOL:automatic] +synonym: "lamina propria mucosa of bronchial trunk" EXACT [OBOL:automatic] +synonym: "lamina propria mucosa of bronchus" EXACT [OBOL:automatic] +synonym: "lamina propria mucosae of bronchi" EXACT [OBOL:automatic] +synonym: "lamina propria mucosae of bronchial trunk" EXACT [OBOL:automatic] +synonym: "lamina propria mucosae of bronchus" EXACT [OBOL:automatic] +synonym: "lamina propria of bronchi" EXACT [OBOL:automatic] +synonym: "lamina propria of bronchial trunk" EXACT [OBOL:automatic] +xref: EMAPA:35194 +xref: FMA:86619 +xref: http://linkedlifedata.com/resource/umls/id/C1707054 +xref: MA:0001836 +xref: NCIT:C49212 +xref: UMLS:C1707054 {source="ncithesaurus:Bronchus_Lamina_Propria"} +is_a: UBERON:0000031 ! lamina propria of trachea +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000030 ! lamina propria +intersection_of: part_of UBERON:0002185 ! bronchus +relationship: part_of UBERON:0000410 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! bronchial mucosa + +[Term] +id: UBERON:0002339 +name: epithelium of lobar bronchus +def: "The tissue made up of epithelial cells that lines the inside of the lobar bronchus." [GO:0060481] +synonym: "epithelial tissue of lobar bronchus" EXACT [OBOL:automatic] +synonym: "epithelial tissue of secondary bronchus" EXACT [OBOL:automatic] +synonym: "epithelium of secondary bronchus" EXACT [OBOL:automatic] +synonym: "lobar bronchial epithelium" EXACT [] +synonym: "lobar bronchus epithelial tissue" EXACT [OBOL:automatic] +synonym: "lobar bronchus epithelium" EXACT [] +synonym: "secondary bronchus epithelial tissue" EXACT [OBOL:automatic] +synonym: "secondary bronchus epithelium" EXACT [OBOL:automatic] +xref: EMAPA:32695 +xref: FMA:86624 +xref: MA:0001842 +is_a: UBERON:0000115 ! lung epithelium +is_a: UBERON:0002031 ! epithelium of bronchus +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002183 ! lobar bronchus +relationship: part_of UBERON:0002183 ! lobar bronchus + +[Term] +id: UBERON:0002340 +name: epithelium of main bronchus +alt_id: UBERON:0003245 +def: "An epithelium that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchus principalis epithelial tissue" EXACT [OBOL:automatic] +synonym: "bronchus principalis epithelium" EXACT [OBOL:automatic] +synonym: "epithelial tissue of bronchus principalis" EXACT [OBOL:automatic] +synonym: "epithelial tissue of main bronchus" EXACT [OBOL:automatic] +synonym: "epithelial tissue of primary bronchus" EXACT [OBOL:automatic] +synonym: "epithelial tissue of principal bronchus" EXACT [OBOL:automatic] +synonym: "epithelium of bronchus principalis" EXACT [OBOL:automatic] +synonym: "epithelium of primary bronchus" EXACT [OBOL:automatic] +synonym: "epithelium of principal bronchus" EXACT [OBOL:automatic] +synonym: "main bronchial epithelium" EXACT [] +synonym: "main bronchus epithelial tissue" EXACT [OBOL:automatic] +synonym: "main bronchus epithelium" EXACT [] +synonym: "primary bronchus epithelial tissue" EXACT [OBOL:automatic] +synonym: "primary bronchus epithelium" EXACT [OBOL:automatic] +synonym: "principal bronchus epithelial tissue" EXACT [OBOL:automatic] +synonym: "principal bronchus epithelium" EXACT [OBOL:automatic] +xref: EHDAA2:0001047 +xref: EHDAA:5003 +xref: EMAPA:16851 +xref: FMA:86625 +xref: MA:0001847 +xref: VHOG:0001034 +is_a: UBERON:0002031 ! epithelium of bronchus +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002182 ! main bronchus +relationship: part_of UBERON:0002182 ! main bronchus + +[Term] +id: UBERON:0002341 +name: epithelium of segmental bronchus +def: "An epithelium that is part of a segmental bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of segmental bronchus" EXACT [OBOL:automatic] +synonym: "epithelial tissue of tertiary bronchus" EXACT [OBOL:automatic] +synonym: "epithelium of tertiary bronchus" EXACT [OBOL:automatic] +synonym: "segmental bronchial epithelium" EXACT [] +synonym: "segmental bronchus epithelial tissue" EXACT [OBOL:automatic] +synonym: "segmental bronchus epithelium" EXACT [] +synonym: "tertiary bronchus epithelial tissue" EXACT [OBOL:automatic] +synonym: "tertiary bronchus epithelium" EXACT [OBOL:automatic] +xref: EMAPA:37740 {source="MA:th"} +xref: FMA:86626 +xref: MA:0001850 +is_a: UBERON:0000115 ! lung epithelium +is_a: UBERON:0002031 ! epithelium of bronchus +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002184 ! segmental bronchus +relationship: part_of UBERON:0002184 ! segmental bronchus + +[Term] +id: UBERON:0002342 +name: neural crest +def: "A specialized region of ectoderm found between the neural ectoderm (neural plate) and non-neural ectoderm and composed of highly migratory pluripotent cells that delaminate in early embryonic development from the dorsal neural tube and give rise to an astounding variety of differentiated cell types[MP]." [MP:0009846] +comment: Gene notes: Many factors and genes, such as Pax3 (Tremblay et al., 1995), slug (Nieto et al., 1994), AP-2 (Zhang et al., 1996; Schorle et al., 1996), and Wnt-1/3a (Ikeya et al., 1997) are expressed in the dorsal most region of the neural tube, and have been shown to be involved in the generation of neural crest cells. +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "crista neuralis" RELATED LATIN [http://en.wikipedia.org/wiki/Neural_crest] +synonym: "NC" EXACT ABBREVIATION [XAO:0000048] +synonym: "neural crest material" RELATED [VHOG:0000057] +xref: AAO:0010578 +xref: BTO:0001764 +xref: CALOHA:TS-0676 +xref: EHDAA2:0004419 +xref: EMAPA:32737 +xref: FMA:86666 +xref: GAID:1310 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1366 +xref: http://linkedlifedata.com/resource/umls/id/C0027789 +xref: http://www.snomedbrowser.com/Codes/Details/361462002 +xref: MAT:0000066 +xref: MESH:A16.254.600 +xref: MIAA:0000066 +xref: NCIT:C34222 +xref: Neural:crest +xref: TAO:0000045 +xref: UMLS:C0027789 {source="ncithesaurus:Neural_Crest"} +xref: VHOG:0000057 +xref: XAO:0000048 +xref: ZFA:0000045 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010316 ! germ layer / neural crest +relationship: develops_from UBERON:0003075 {source="BTO"} ! neural plate +relationship: develops_from UBERON:0005062 {source="http://www.ncbi.nlm.nih.gov/pubmed/11523831"} ! neural fold +relationship: dubious_for_taxon NCBITaxon:117565 {source="http://www.ncbi.nlm.nih.gov/pubmed/17377535", source="ISBN:0073040584"} +relationship: existence_starts_during UBERON:0000110 {source="http://www.ncbi.nlm.nih.gov/pubmed/11523831"} ! neurula stage +relationship: part_of UBERON:0002346 {source="https://github.com/obophenotype/uberon/wiki/The-neural-crest", source="XAO"} ! neurectoderm + +[Term] +id: UBERON:0002343 +name: abdomen musculature +def: "Set of all muscles in abdomen." [OBOL:automatic] +subset: pheno_slim +subset: vertebrate_core +synonym: "abdominal musculature" EXACT [] +synonym: "muscle group of abdomen" EXACT [FMA:71294] +synonym: "muscles of abdomen" EXACT [FMA:71294] +synonym: "musculature of abdomen" EXACT [] +synonym: "musculature of abdominal wall" EXACT [FMA:86917] +synonym: "set of muscles of abdomen" EXACT [FMA:71294] +xref: FMA:71294 +xref: FMA:86917 +xref: TAO:0001327 +xref: ZFA:0001327 +is_a: UBERON:0004479 ! musculature of trunk +intersection_of: UBERON:0001015 ! musculature +intersection_of: part_of UBERON:0000916 ! abdomen +relationship: part_of UBERON:0000916 ! abdomen + +[Term] +id: UBERON:0002345 +name: descending thoracic aorta +def: "The part of the aorta that extends from the arch of the aorta to the diaphragm, and from which arises numerous branches that supply oxygenated blood to the chest cage and the organs within the chest." [MP:0009868] +subset: efo_slim +subset: pheno_slim +xref: EFO:0002527 +xref: EMAPA:18605 +xref: FMA:87217 +xref: http://www.snomedbrowser.com/Codes/Details/181301002 +xref: MA:0002572 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0013522 ! subdivision of tube +relationship: contributes_to_morphology_of UBERON:0001514 ! descending aorta +relationship: contributes_to_morphology_of UBERON:0001515 ! thoracic aorta +relationship: part_of UBERON:0001514 ! descending aorta +relationship: part_of UBERON:0001515 ! thoracic aorta + +[Term] +id: UBERON:0002346 +name: neurectoderm +def: "Embryonic ectoderm that gives rise to nervous tissue." [http://en.wikipedia.org/wiki/Neuroectoderm] +subset: uberon_slim +subset: vertebrate_core +synonym: "epithelium tubi neuralis; neuroectoderma" RELATED LATIN [http://en.wikipedia.org/wiki/Neuroectoderm] +synonym: "neuaral ectoderm" RELATED [] +synonym: "neural ectoderm" EXACT [] +synonym: "neuroectoderm" EXACT [] +synonym: "presumptive central nervous system" RELATED [] +synonym: "ventral neurogenic region" RELATED [VHOG:0000150] +xref: AAO:0011074 +xref: BILA:0000039 +xref: CALOHA:TS-1212 +xref: EHDAA2:0001248 +xref: EHDAA:1498 +xref: EHDAA:255 +xref: EMAPA:16073 +xref: EV:0100004 +xref: FBbt:00001061 +xref: FMA:87657 +xref: http://en.wikipedia.org/wiki/Neuroectoderm +xref: http://linkedlifedata.com/resource/umls/id/C1518271 +xref: MAT:0000176 +xref: MIAA:0000176 +xref: NCIT:C34228 +xref: TAO:0001120 +xref: UMLS:C1518271 {source="ncithesaurus:Neuroectoderm"} +xref: VHOG:0000150 +xref: XAO:0000042 +xref: ZFA:0001120 +is_a: UBERON:0000923 ! germ layer +is_a: UBERON:0004121 ! ectoderm-derived structure + +[Term] +id: UBERON:0002347 +name: thoracic vertebra +def: "A thoracic vertebra endochondral element that is composed primarily of a bone tissue." [OBOL:automatic] +subset: pheno_slim +subset: uberon_slim +synonym: "dorsal vertebra" EXACT [] +synonym: "thorax vertebra" EXACT [OBOL:automatic] +synonym: "vertebra of thorax" EXACT [OBOL:automatic] +synonym: "vertebra thoracica" EXACT [] +xref: EMAPA:18011 +xref: FMA:9139 +xref: GAID:244 +xref: http://linkedlifedata.com/resource/umls/id/C0039987 +xref: http://www.snomedbrowser.com/Codes/Details/181821009 +xref: MA:0000314 +xref: MESH:D013904 +xref: NCIT:C12798 +xref: OpenCyc:Mx4rvdZIBpwpEbGdrcN5Y29ycA +xref: Thoracic:vertebrae +xref: UMLS:C0039987 {source="ncithesaurus:Thoracic_Vertebra"} +is_a: UBERON:0002412 ! vertebra +is_a: UBERON:0003827 ! thoracic segment bone +is_a: UBERON:0004247 ! bone of dorsum +is_a: UBERON:0015008 ! thoracic vertebra endochondral element +intersection_of: UBERON:0015008 ! thoracic vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0013507 ! thoracic vertebra cartilage element + +[Term] +id: UBERON:0002348 +name: epicardium +def: "a region of the serous membrane that forms the innermost layer of the pericardium and the outer surface of the heart." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "heart epicardium" EXACT [] +synonym: "pericardium visceral mesothelium" RELATED [EMAPA:16589] +synonym: "visceral serous pericardium of heart" EXACT [FMA:9461] +synonym: "visceral serous pericardium proper" EXACT [FMA:9461] +xref: AAO:0010409 +xref: EHDAA2:0002202 +xref: FMA:9461 +xref: galen:Epicardium +xref: http://en.wikipedia.org/wiki/Epicardium +xref: http://linkedlifedata.com/resource/umls/id/C0225968 +xref: NCIT:C13164 +xref: TAO:0005057 +xref: UMLS:C0225968 {source="ncithesaurus:Epicardium"} +xref: VHOG:0000119 +xref: XAO:0000316 +xref: ZFA:0005057 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: attaches_to UBERON:0002349 {source="FMA"} ! myocardium +relationship: develops_from UBERON:0004160 ! proepicardium +relationship: part_of UBERON:0000948 {source="multiple"} ! heart +relationship: part_of UBERON:0002425 {source="FMA-inferred"} ! visceral serous pericardium + +[Term] +id: UBERON:0002349 +name: myocardium +def: "the middle layer of the heart, comprised mainly of striated cardiac muscle fibers" [ISBN:0-683-40008-8, MP:0005329] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "cardiac muscle" RELATED [ZFA:0001319] +synonym: "heart muscle" RELATED [ZFA:0001319] +synonym: "heart muscle" RELATED [FMA:9462] +synonym: "heart myocardium" EXACT [] +synonym: "muscle of heart" EXACT [FMA:9462] +xref: AAO:0010410 +xref: BSA:0000089 +xref: BTO:0000901 +xref: CALOHA:TS-0440 +xref: EFO:0000819 +xref: EHDAA2:0004150 +xref: EMAPA:32688 +xref: EV:0100022 +xref: FMA:9462 +xref: GAID:173 +xref: galen:Myocardium +xref: http://en.wikipedia.org/wiki/Myocardium +xref: http://linkedlifedata.com/resource/umls/id/C0027061 +xref: http://www.snomedbrowser.com/Codes/Details/362012001 +xref: MA:0000164 +xref: MAT:0000453 +xref: MESH:D009206 +xref: NCIT:C12371 +xref: OpenCyc:Mx4ro36AFrCvEduAAAAOpmP6tw +xref: RETIRED_EHDAA2:0001220 +xref: TAO:0001319 +xref: UMLS:C0027061 {source="ncithesaurus:Myocardium"} +xref: VHOG:0000083 +xref: XAO:0000065 +xref: ZFA:0001319 +is_a: UBERON:0005983 ! heart layer +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0018260 ! layer of muscle tissue +intersection_of: UBERON:0005983 ! heart layer +intersection_of: composed_primarily_of UBERON:0001133 ! cardiac muscle tissue +relationship: composed_primarily_of UBERON:0001133 ! cardiac muscle tissue +relationship: has_part UBERON:0002350 ! conducting system of heart +relationship: part_of UBERON:0000383 ! musculature of body + +[Term] +id: UBERON:0002350 +name: conducting system of heart +def: "The cardiac conduction system consists of specialized cardiomyocytes that regulate the frequency of heart beat[GO]" [GO:0003161] +subset: efo_slim +subset: pheno_slim +subset: vertebrate_core +synonym: "cardiac conducting system" EXACT [VHOG:0001271] +synonym: "cardiac conduction system" EXACT [] +synonym: "cardiac impulse conducting system" EXACT [GO:0003161] +synonym: "cardionector" EXACT [] +synonym: "central conduction system" RELATED [] +synonym: "complexus stimulans cordis" EXACT LATIN [FMA:9476, FMA:TA] +synonym: "heart conduction system" EXACT [GO:0003161] +synonym: "impulse conducting system" EXACT [MA:0000094] +synonym: "systema conducente cordis" EXACT LATIN [FMA:9476, FMA:TA] +xref: EFO:0003909 +xref: EHDAA2:0004185 +xref: EMAPA:35428 +xref: EV:0100025 +xref: FMA:9476 +xref: http://www.snomedbrowser.com/Codes/Details/281489000 +xref: MA:0000094 +xref: MESH:D006329 +xref: TAO:0005063 +xref: VHOG:0001271 +xref: ZFA:0005063 +is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium +is_a: UBERON:0010131 {source="FMA"} ! conducting tissue of heart +relationship: contributes_to_morphology_of UBERON:0000948 ! heart + +[Term] +id: UBERON:0002351 +name: sinoatrial node +def: "The part of the cardiac conduction system that controls the timing of heart muscle contraction. It relays electrical signals to the AV node[GO]. Subdivision of conducting system of heart at the junction of the right atrium and the superior vena cava, around the sinoatrial nodal branch of right coronary artery and is continuous with the internodal tract[FMA]." [GO:0003163, http://en.wikipedia.org/wiki/Sinoatrial_node] +comment: WP:Heart states: "The SA node is found in all amniotes but not in more primitive vertebrates. In these animals, the muscles of the heart are relatively continuous and the sinus venosus coordinates the beat which passes in a wave through the remaining chambers. Indeed, since the sinus venosus is incorporated into the right atrium in amniotes, it is likely homologous with the SA node. In teleosts, with their vestigial sinus venosus, the main centre of coordination is, instead, in the atrium.". Note however that ZFA has SA node. +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "cardiac pacemaker" EXACT [FMA:9477] +synonym: "Koch's node" EXACT [FMA:9477] +synonym: "node of Keith-Flack" EXACT [FMA:9477] +synonym: "nodus sinuatrialis" EXACT LATIN [FMA:9477, FMA:TA] +synonym: "nodus sinuatrialis" RELATED LATIN [http://en.wikipedia.org/wiki/Sinoatrial_node] +synonym: "SA nodal muscle tissue" EXACT [FMA:9477] +synonym: "SA node" EXACT [FMA:9477] +synonym: "sinoatrial node" EXACT [FMA:9477] +synonym: "sinu-atrial node" EXACT [FMA:9477] +synonym: "sinuatrial nodal muscle tissue" EXACT [FMA:9477] +synonym: "sinuatrial node" EXACT [FMA:9477] +synonym: "sinus node" EXACT [FMA:9477] +synonym: "sinus node of Keith and Flack" EXACT [FMA:9477] +xref: BTO:0004358 +xref: EHDAA2:0004184 +xref: EMAPA:35772 +xref: FMA:9477 +xref: GAID:561 +xref: http://linkedlifedata.com/resource/umls/id/C0037189 +xref: http://www.snomedbrowser.com/Codes/Details/277687007 +xref: MA:0000097 +xref: MESH:D012849 +xref: NCIT:C33555 +xref: OpenCyc:Mx4rOhejDGMcEd2AAABQjYGu0g +xref: Sinoatrial:node +xref: TAO:0005069 +xref: UMLS:C0037189 {source="ncithesaurus:Sinoatrial_Node"} +xref: ZFA:0005069 +is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium +is_a: UBERON:0010131 {source="cjm"} ! conducting tissue of heart +relationship: contributes_to_morphology_of UBERON:0002350 ! conducting system of heart +relationship: part_of UBERON:0002350 {source="ZFA"} ! conducting system of heart + +[Term] +id: UBERON:0002352 +name: atrioventricular node +def: "An area of conducting tissue between the atria and the ventricles of the heart that conducts the normal electrical impulse from the atria to the ventricles." [http://en.wikipedia.org/wiki/Atrioventricular_node, UBERON:cjm] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "A-V node" RELATED [EMAPA:35153] +synonym: "Aschoff-Tawara node" EXACT [FMA:9478] +synonym: "atrio-ventricular node" RELATED [EMAPA:35153] +synonym: "atrioventricular nodal muscle tissue" EXACT [FMA:9478] +synonym: "atriovetricular node" RELATED [TAO:0005070] +synonym: "AV nodal muscle tissue" EXACT [FMA:9478] +synonym: "AV node" EXACT [FMA:9478, MA:0000095] +synonym: "downstream pacemaker" RELATED [ZFA:0005070] +synonym: "node of Tawara" EXACT [FMA:9478] +synonym: "nodus atrioventricularis" EXACT LATIN [FMA:TA] +synonym: "nodus atrioventricularis" RELATED LATIN [http://en.wikipedia.org/wiki/Atrioventricular_node] +xref: Atrioventricular:node +xref: BTO:0005689 +xref: EFO:0000276 +xref: EHDAA2:0004183 +xref: EMAPA:35153 +xref: FMA:9478 +xref: GAID:558 +xref: http://linkedlifedata.com/resource/umls/id/C0004247 +xref: http://www.snomedbrowser.com/Codes/Details/277688002 +xref: MA:0000095 +xref: MAT:0000498 +xref: MESH:D001283 +xref: NCIT:C32161 +xref: OpenCyc:Mx4rMfD91mMcEd2AAABQjYGu0g +xref: TAO:0005070 +xref: UMLS:C0004247 {source="ncithesaurus:Atrioventricular_Node"} +xref: VHOG:0001474 +xref: ZFA:0005070 +is_a: UBERON:0004491 ! cardiac muscle tissue of interatrial septum +is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium +is_a: UBERON:0010131 {source="cjm"} ! conducting tissue of heart +relationship: connected_to UBERON:0002085 ! interatrial septum +relationship: connected_to UBERON:0005979 ! crista terminalis +relationship: contributes_to_morphology_of UBERON:0002350 ! conducting system of heart +relationship: part_of UBERON:0002350 ! conducting system of heart + +[Term] +id: UBERON:0002353 +name: bundle of His +def: "A part of the His-Purkinje system that transmits signals from the AV node to the cardiac Purkinje fibers[GO]" [GO:0003166, GOC:mtg_heart] +subset: pheno_slim +subset: uberon_slim +synonym: "A-V bundle" RELATED [EMAPA:35152] +synonym: "atrio-ventricular bundle" EXACT [EMAPA:35152] +synonym: "atrioventricular bundle" EXACT [] +synonym: "atrioventricular bundle muscle tissue" EXACT [FMA:9484] +synonym: "atrioventricular fasciculus" EXACT [FMA:9484] +synonym: "AV bundle" EXACT [] +synonym: "AVB" EXACT ABBREVIATION [] +synonym: "bundle of His" EXACT [FMA:9484, GO:0003166] +synonym: "fasciculus atrioventricularis" EXACT LATIN [http://en.wikipedia.org/wiki/Bundle_of_His] +synonym: "His bundle" EXACT [] +xref: EMAPA:35152 +xref: FMA:9484 +xref: GAID:559 +xref: galen:BundleOfHis +xref: http://en.wikipedia.org/wiki/Bundle_of_His +xref: http://linkedlifedata.com/resource/umls/id/C0006382 +xref: http://www.snomedbrowser.com/Codes/Details/362022007 +xref: MA:0002576 +xref: MESH:D002036 +xref: NCIT:C32160 +xref: OpenCyc:Mx4rUv1WcGPJEd2AAABQjYGu0g +xref: UMLS:C0006382 {source="ncithesaurus:Atrioventricular_Bundle"} +is_a: UBERON:0010131 {source="cjm"} ! conducting tissue of heart +is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle +relationship: contributes_to_morphology_of UBERON:0002350 ! conducting system of heart +relationship: part_of UBERON:0004146 {source="GO"} ! His-Purkinje system + +[Term] +id: UBERON:0002354 +name: cardiac Purkinje fiber +alt_id: UBERON:0004147 +def: "The cardiac Purkinje fiber is part of the cardiac conduction system that receives signals from the bundle of His and innervates the ventricular cardiac muscle" [GO:0003165] +subset: pheno_slim +subset: uberon_slim +synonym: "cardiac Purkinje fiber" EXACT [BTO:0001735, GO:0003165] +synonym: "heart Purkinje fiber" RELATED [BTO:0001735] +synonym: "myofibra conducens cardiacus" EXACT LATIN [] +synonym: "Purkinje fiber" EXACT [FMA:9492, MA:0000096] +synonym: "subendocardial branch" EXACT [http://en.wikipedia.org/wiki/Purkinje_fiber] +xref: BTO:0001735 +xref: EMAPA:35718 +xref: FMA:9492 +xref: GAID:560 +xref: http://linkedlifedata.com/resource/umls/id/C0034144 +xref: MA:0000096 +xref: MESH:D011690 +xref: NCIT:C33430 +xref: Purkinje:fiber +xref: UMLS:C0034144 {source="ncithesaurus:Purkinje_Fiber"} +is_a: UBERON:0010131 {source="FMA"} ! conducting tissue of heart +is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle +relationship: contributes_to_morphology_of UBERON:0002350 ! conducting system of heart +relationship: part_of UBERON:8000009 {source="https://github.com/obophenotype/uberon/issues/1785", source="https://orcid.org/0000-0001-5208-3432", source="https://orcid.org/0000-0002-9791-0064"} ! Purkinje fiber network + +[Term] +id: UBERON:0002355 +name: pelvic region of trunk +def: "The lower segment of the trunk, inferioposterior to the abdomen proper, in the transition area between the trunk and the lower limbs." [http://en.wikipedia.org/wiki/Pelvis, http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/720] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "lesser pelvis" EXACT [FMA:9578] +synonym: "pelvic region" EXACT [] +synonym: "pelvis" EXACT [FMA:9578, MA:0000030] +synonym: "pelvis region" EXACT [] +synonym: "true pelvis" EXACT [FMA:9578] +xref: BTO:0001006 +xref: CALOHA:TS-2227 +xref: EFO:0002805 +xref: EMAPA:35931 +xref: EV:0100012 +xref: FMA:9578 +xref: GAID:87 +xref: galen:Pelvis +xref: http://en.wikipedia.org/wiki/Pelvis +xref: http://linkedlifedata.com/resource/umls/id/C0030797 +xref: http://www.snomedbrowser.com/Codes/Details/229765004 +xref: MA:0000030 +xref: MESH:A01.673 +xref: NCIT:C12767 +xref: OpenCyc:Mx4rvVjiTJwpEbGdrcN5Y29ycA +xref: UMLS:C0030797 {source="ncithesaurus:Pelvis"} +is_a: UBERON:0000475 ! organism subdivision +relationship: has_part UBERON:0007832 ! pelvic girdle skeleton +relationship: part_of UBERON:0002417 ! abdominal segment of trunk + +[Term] +id: UBERON:0002356 +name: perineum +def: "Subdivision of trunk proper, which is demarcated from the pelvis by the inferior surface of the pelvic diaphragm and from the lower limbs by the perineofemoral lines; together with the thorax, abdomen, and pelvis, it constitutes the trunk[FMA]." [FMA:9579, http://en.wikipedia.org/wiki/Perineum] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "perineal region" EXACT [] +synonym: "regio perinealis" EXACT LATIN [FMA:9579, FMA:TA] +xref: EFO:0004141 +xref: EHDAA2:0004015 +xref: EMAPA:36628 +xref: EV:0100013 +xref: FMA:9579 +xref: GAID:90 +xref: galen:Perineum +xref: http://en.wikipedia.org/wiki/Perineum +xref: http://linkedlifedata.com/resource/umls/id/C0031066 +xref: http://www.snomedbrowser.com/Codes/Details/243990009 +xref: MA:0002466 +xref: MESH:D010502 +xref: NCIT:C33301 +xref: OpenCyc:Mx4rvcHSh5wpEbGdrcN5Y29ycA +xref: UMLS:C0031066 {source="ncithesaurus:Perineum"} +is_a: UBERON:0009569 {source="FMA-modified"} ! subdivision of trunk +relationship: part_of UBERON:0002417 ! abdominal segment of trunk +relationship: part_of UBERON:0012469 {source="EHDAA2"} ! external anal region + +[Term] +id: UBERON:0002357 +name: serous pericardium +def: "Serous membrane which is divided into parietal and visceral serous pericardium." [http://en.wikipedia.org/wiki/Serous_pericardium, http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "pericardium serosum" RELATED LATIN [http://en.wikipedia.org/wiki/Serous_pericardium] +synonym: "serous portion of pericardium" EXACT [FMA:9582] +xref: EMAPA:19030 +xref: FMA:9582 +xref: http://www.snomedbrowser.com/Codes/Details/243954002 +xref: MA:0002739 +xref: Serous:pericardium +is_a: UBERON:0000042 ! serous membrane +relationship: attaches_to UBERON:0002359 {source="FMA"} ! fibrous pericardium +relationship: has_part UBERON:0002408 ! parietal serous pericardium +relationship: has_part UBERON:0002425 ! visceral serous pericardium +relationship: part_of UBERON:0002406 {source="FMA"} ! pericardial sac + +[Term] +id: UBERON:0002358 +name: peritoneum +def: "A serous membrane that lines the peritoneal cavity[VHOG,modified]." [VHOG:0001257] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "peritonaeum" RELATED [VHOG:0001257] +xref: AAO:0010814 +xref: BTO:0001472 +xref: CALOHA:TS-2072 +xref: EV:0100087 +xref: FMA:9584 +xref: GAID:18 +xref: galen:Peritoneum +xref: http://en.wikipedia.org/wiki/Peritoneum +xref: http://linkedlifedata.com/resource/umls/id/C0031153 +xref: MA:0000449 +xref: MESH:A01.047.025.600 +xref: NCIT:C12770 +xref: OpenCyc:Mx4rvjJ72ZwpEbGdrcN5Y29ycA +xref: TAO:0005120 +xref: UMLS:C0031153 {source="ncithesaurus:Peritoneum"} +xref: VHOG:0001257 +xref: XAO:0000139 +xref: ZFA:0005120 +is_a: UBERON:0000042 ! serous membrane +intersection_of: UBERON:0000042 ! serous membrane +intersection_of: part_of UBERON:0035820 ! peritoneal sac +relationship: part_of UBERON:0003697 {source="MP"} ! abdominal wall +relationship: part_of UBERON:0035820 ! peritoneal sac + +[Term] +id: UBERON:0002359 +name: fibrous pericardium +def: "Membrane organ which is attached to the pericardial sac proper and the central tendon of diaphragm and is continuous with the pretracheal fascia.[FMA]" [FMA:9586] +subset: organ_slim +subset: uberon_slim +synonym: "fibrous portion of pericardium" EXACT [] +synonym: "pericardium fibrosum" RELATED LATIN [http://en.wikipedia.org/wiki/Fibrous_pericardium] +xref: EMAPA:19029 +xref: Fibrous:pericardium +xref: FMA:9586 +xref: http://www.snomedbrowser.com/Codes/Details/243953008 +xref: MA:0002738 +is_a: UBERON:0000094 {source="FMA"} ! membrane organ +is_a: UBERON:0005181 ! thoracic segment organ +relationship: composed_primarily_of UBERON:0006815 {source="WP"} ! areolar connective tissue +relationship: continuous_with UBERON:0002408 ! parietal serous pericardium +relationship: part_of UBERON:0002407 {source="FMA"} ! pericardium + +[Term] +id: UBERON:0002360 +name: meninx +def: "Membrane organ that surrounds the brain and the spinal cord." [FMA:9589, http://en.wikipedia.org/wiki/Meninx, http://www.shsu.edu/~bio_mlt/Chap15.html] +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "layer of meninges" EXACT [] +synonym: "meningeal layer" EXACT [] +synonym: "meninx primitiva" NARROW [VHOG:0001295] +xref: BTO:0000144 +xref: CALOHA:TS-1177 +xref: EFO:0000867 +xref: EMAPA:32660 +xref: EV:0100312 +xref: FMA:9589 +xref: GAID:687 +xref: http://en.wikipedia.org/wiki/Meninx +xref: http://linkedlifedata.com/resource/umls/id/C0025285 +xref: MA:0001113 +xref: MAT:0000113 +xref: MESH:D008578 +xref: NCIT:C12348 +xref: NLXANAT:090204 +xref: OpenCyc:Mx4rwDOl8JwpEbGdrcN5Y29ycA +xref: TAO:0001355 +xref: UMLS:C0025285 {source="ncithesaurus:Meninges"} +xref: VHOG:0001295 +xref: ZFA:0001355 +is_a: UBERON:0000094 {source="FMA"} ! membrane organ +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0007645 ! future meninx +relationship: fma_set_term FMA:76821 +relationship: immediate_transformation_of UBERON:0007645 {source="Bgee:AN"} ! future meninx +relationship: part_of UBERON:0010743 ! meningeal cluster + +[Term] +id: UBERON:0002361 +name: pia mater +def: "The innermost layer of the leptomeninges, consisting of a delicate membrane closely covering the surface of the brain and spinal cord,and lying under the arachnoid membrane. The pia, unlike the arachnoid, extends into the sulci in gyrencephalic animals." [NLXANAT:090209] +subset: pheno_slim +subset: uberon_slim +synonym: "pia" RELATED [NLXANAT:090209] +synonym: "pia mater of neuraxis" EXACT [] +synonym: "pial membrane" EXACT [NLXANAT:090209] +xref: BTO:0001635 +xref: EHDAA2:0004318 +xref: EHDAA:1367 +xref: EHDAA:1961 +xref: EHDAA:2001 +xref: EHDAA:2099 +xref: EHDAA:2685 +xref: EHDAA:2833 +xref: EHDAA:2867 +xref: EHDAA:3692 +xref: EHDAA:3710 +xref: EHDAA:6566 +xref: EHDAA:6583 +xref: EMAPA:32663 +xref: EV:0100315 +xref: FMA:9590 +xref: GAID:693 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1463 +xref: http://linkedlifedata.com/resource/umls/id/C0031869 +xref: http://www.snomedbrowser.com/Codes/Details/362305004 +xref: MA:0001116 +xref: MESH:D010841 +xref: NCIT:C33321 +xref: NLXANAT:090209 +xref: OpenCyc:Mx4rvtesBZwpEbGdrcN5Y29ycA +xref: Pia:mater +xref: RETIRED_EHDAA2:0001464 +xref: UMLS:C0031869 {source="ncithesaurus:Pia_Mater"} +is_a: UBERON:0000391 ! leptomeninx +relationship: composed_primarily_of UBERON:0011825 ! loose connective tissue + +[Term] +id: UBERON:0002362 +name: arachnoid mater +def: "A think avascular meningeal layer, between the pia mater and the dural mater. It is separated from the pia mater by the subarachnoid space." [http://en.wikipedia.org/wiki/Arachnoid_mater, ISBN:0471888893] +subset: pheno_slim +subset: uberon_slim +synonym: "arachnoid" EXACT [] +synonym: "arachnoid mater of neuraxis" EXACT [] +synonym: "arachnoid membrane" EXACT [NLXANAT:090208] +synonym: "arachnoidea mater" RELATED [BTO:0001636] +xref: Arachnoid:mater +xref: BTO:0001636 +xref: CALOHA:TS-0052 +xref: EMAPA:32659 +xref: EV:0100314 +xref: FMA:9591 +xref: GAID:688 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1464 +xref: http://linkedlifedata.com/resource/umls/id/C1510935 +xref: http://www.snomedbrowser.com/Codes/Details/362304000 +xref: MA:0001114 +xref: MESH:D001099 +xref: NCIT:C32136 +xref: NLXANAT:090208 +xref: OpenCyc:Mx4rve5HlJwpEbGdrcN5Y29ycA +xref: UMLS:C1510935 {source="ncithesaurus:Arachnoid_Membrane"} +is_a: UBERON:0000391 ! leptomeninx + +[Term] +id: UBERON:0002363 +name: dura mater +def: "Thick, fibrous meningeal covering surrounding the brain and spinal cord. It is the outermost of the three meningeal coverings. It consists of two layers: the periosteal dura linking the inner surface of the skull and the meningeal dura that lies above the arachnoid dural membrane. The meningeal layer draws away from the periosteal layer and certain locations to form the dural reflections." [NLXANAT:090206] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "dura" RELATED [BTO:0001637] +synonym: "dura mater of neuraxis" EXACT [] +synonym: "pachymeninges" EXACT [NLXANAT:090206] +xref: BTO:0001637 +xref: CALOHA:TS-2008 +xref: Dura:mater +xref: EMAPA:32664 +xref: EV:0100313 +xref: FMA:9592 +xref: GAID:691 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1462 +xref: http://linkedlifedata.com/resource/umls/id/C0013313 +xref: http://www.snomedbrowser.com/Codes/Details/362301008 +xref: MA:0001115 +xref: MESH:D004388 +xref: NCIT:C32488 +xref: NLXANAT:090206 +xref: OpenCyc:Mx4rvvmzqZwpEbGdrcN5Y29ycA +xref: UMLS:C0013313 {source="ncithesaurus:Dura_Mater"} +is_a: UBERON:0002360 ! meninx +relationship: continuous_with UBERON:0001773 {source="http://www.ncbi.nlm.nih.gov/pubmed/16496288"} ! sclera +relationship: develops_from UBERON:0007647 ! ectomeninx +relationship: immediate_transformation_of UBERON:0007647 {evidence="definitional"} ! ectomeninx + +[Term] +id: UBERON:0002364 +name: tympanic membrane +def: "A thin membrane that separates the external ear from the middle ear, consisting of two epithelia (one part of the the external accoustic meatus epithelium, the other part of the tympanic cavity epithelium) with a fibrous layer between them. Its function is to transmit sound from the air to the ossicles inside the middle ear. The malleus bone bridges the gap between the eardrum and the other ossicles. Rupture or perforation of the eardrum can lead to conductive hearing loss. [WP,unvetted]." [http://en.wikipedia.org/wiki/Tympanic_membrane, http://www.ncbi.nlm.nih.gov/pubmed/11237469] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "ear drum" EXACT [] +synonym: "eardrum" EXACT [] +synonym: "lateral wall of tympanic cavity" EXACT [] +synonym: "membranous wall of tympanic cavity" EXACT [] +synonym: "myrinx" EXACT [] +synonym: "paries membranaceus cavi tympani" EXACT LATIN [FMA:9595, FMA:TA] +synonym: "Rivinus' membrane" EXACT [] +synonym: "tympanum" RELATED [http://en.wikipedia.org/wiki/Tympanic_membrane] +xref: EMAPA:19062 +xref: EV:0100358 +xref: FMA:9595 +xref: GAID:870 +xref: http://linkedlifedata.com/resource/umls/id/C0041445 +xref: http://www.snomedbrowser.com/Codes/Details/181180005 +xref: MA:0000257 +xref: MESH:A09.246.397.873 +xref: NCIT:C12502 +xref: Tympanic:membrane +xref: UMLS:C0041445 {source="ncithesaurus:Tympanic_Membrane"} +xref: VHOG:0001146 +xref: XAO:0000212 +is_a: UBERON:0000094 {source="FMA"} ! membrane organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: adjacent_to UBERON:0004114 {source="cjm"} ! tympanic cavity +relationship: contributes_to_morphology_of UBERON:0001756 ! middle ear +relationship: develops_from UBERON:0009213 {source="Wikipedia"} ! pharyngeal membrane of 1st arch +relationship: has_part UBERON:0005042 ! inner epithelial layer of tympanic membrane +relationship: has_part UBERON:0010069 ! outer epithelial layer of tympanic membrane +relationship: has_part UBERON:0010070 ! intermediate layer of tympanic membrane +relationship: part_of UBERON:0001756 {source="MA"} ! middle ear + +[Term] +id: UBERON:0002365 +name: exocrine gland +def: "A gland that secretes products (excluding hormones and other chemical messengers) into ducts (duct glands) which lead directly into the external environment[WP]. Typical exocrine glands include sweat glands, salivary glands, mammary glands, stomach, liver, pancreas" [http://en.wikipedia.org/wiki/Exocrine_gland] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "ducted gland" EXACT [AEO:0000097] +synonym: "glandula exocrina" EXACT LATIN [http://en.wikipedia.org/wiki/Exocrine_gland] +xref: AEO:0000097 +xref: BTO:0000765 +xref: CALOHA:TS-2012 +xref: EHDAA2:0003097 +xref: EMAPA:35327 +xref: Exocrine:gland +xref: FMA:9596 +xref: GAID:34 +xref: http://linkedlifedata.com/resource/umls/id/C0015282 +xref: http://www.snomedbrowser.com/Codes/Details/115976003 +xref: MA:0002564 +xref: MESH:D005088 +xref: NCIT:C12712 +xref: UMLS:C0015282 {source="ncithesaurus:Exocrine_Gland"} +is_a: UBERON:0002530 ! gland +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0002330 ! exocrine system +relationship: has_part UBERON:0000058 ! duct +relationship: part_of UBERON:0002330 ! exocrine system + +[Term] +id: UBERON:0002366 +name: bulbo-urethral gland +def: "Any of the small paired racemose glands below the apex of the prostate in males, located posterolateral to the membranous portion of the urethra at the base of the penis, between the two layers of the fascia of the urogenital diaphragm, in the deep perineal pouch, and enclosed by transverse fibers of the sphincter urethrae membranaceae muscle; homologous to the greater vestibular (Bartholin's) glands in the female[MP]" [http://en.wikipedia.org/wiki/Bulbourethral_gland, MP:anna] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "bulbourethral gland" EXACT [FMA:9599] +synonym: "Cowper's gland" EXACT [FMA:9599] +synonym: "Cowper's gland of male" RELATED [EMAPA:19286] +synonym: "Cowper's glands" EXACT PLURAL [FMA:9599] +synonym: "glandula bulbourethralis" EXACT LATIN [MP:anna] +synonym: "Mery's gland" EXACT [] +synonym: "Méry gland" EXACT [MP:anna] +xref: BTO:0001698 +xref: Bulbourethral:gland +xref: CALOHA:TS-0103 +xref: EMAPA:19286 +xref: FMA:9599 +xref: GAID:387 +xref: http://linkedlifedata.com/resource/umls/id/C0006366 +xref: http://www.snomedbrowser.com/Codes/Details/278918009 +xref: MA:0000401 +xref: MESH:D002030 +xref: NCIT:C32395 +xref: UMLS:C0006366 {source="ncithesaurus:Cowper_s_Gland"} +is_a: UBERON:0006868 ! seminal fluid secreting gland +is_a: UBERON:0010147 ! male accessory sex gland +is_a: UBERON:0010186 ! male urethral gland +relationship: contributes_to_morphology_of UBERON:0004054 ! internal male genitalia +relationship: produces UBERON:0004691 ! bulbourethral gland secretion +relationship: sexually_homologous_to UBERON:0000460 {subset="gland"} ! major vestibular gland + +[Term] +id: UBERON:0002367 +name: prostate gland +def: "The prostate gland is a partly muscular, partly glandular body that is situated near the base of the mammalian male urethra and secretes an alkaline viscid fluid which is a major constituent of the ejaculatory fluid." [GO:0030850, http://en.wikipedia.org/wiki/Prostate] +subset: efo_slim +subset: major_organ +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "male prostate" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/10668204] +synonym: "prostata" RELATED LATIN [http://en.wikipedia.org/wiki/Prostate] +synonym: "prostate" EXACT [] +xref: BTO:0001129 +xref: CALOHA:TS-0828 +xref: EFO:0000858 +xref: EMAPA:19287 +xref: EV:0100104 +xref: FMA:9600 +xref: GAID:392 +xref: galen:ProstateGland +xref: http://en.wikipedia.org/wiki/Prostate +xref: http://linkedlifedata.com/resource/umls/id/C0033572 +xref: http://www.snomedbrowser.com/Codes/Details/181422007 +xref: MA:0000404 +xref: MAT:0000078 +xref: MESH:D011467 +xref: MIAA:0000078 +xref: NCIT:C12410 +xref: OpenCyc:Mx4rv6trqZwpEbGdrcN5Y29ycA +xref: UMLS:C0033572 {source="ncithesaurus:Prostate_Gland"} +xref: VHOG:0001261 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0010147 ! male accessory sex gland +relationship: develops_from UBERON:0003820 ! prostate bud + +[Term] +id: UBERON:0002368 +name: endocrine gland +def: "Endocrine glands are glands of the endocrine system that secrete their products directly into the circulatory system rather than through a duct.[WP, modified]." [http://en.wikipedia.org/wiki/Endocrine_gland] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "ductless gland" EXACT [AEO:0000098] +synonym: "ductless gland" RELATED [http://en.wikipedia.org/wiki/Ductless_gland] +synonym: "glandula endocrina" EXACT [] +synonym: "glandulae endocrinae" RELATED LATIN [http://en.wikipedia.org/wiki/Endocrine_gland] +xref: AEO:0000098 +xref: BTO:0001488 +xref: CALOHA:TS-1300 +xref: EHDAA2:0003098 +xref: EMAPA:35999 +xref: Endocrine:gland +xref: FMA:9602 +xref: GAID:335 +xref: http://linkedlifedata.com/resource/umls/id/C0014133 +xref: http://www.snomedbrowser.com/Codes/Details/40818001 +xref: MA:0002563 +xref: MESH:D004702 +xref: NCIT:C12704 +xref: OpenCyc:Mx4rvbkiRZwpEbGdrcN5Y29ycA +xref: UMLS:C0014133 {source="ncithesaurus:Endocrine_Gland"} +is_a: UBERON:0002530 ! gland +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0000949 ! endocrine system +relationship: part_of UBERON:0000949 ! endocrine system + +[Term] +id: UBERON:0002369 +name: adrenal gland +def: "Either of a pair of complex endocrine organs near the anterior medial border of the kidney consisting of a mesodermal cortex that produces glucocorticoid, mineralocorticoid, and androgenic hormones and an ectodermal medulla that produces epinephrine and norepinephrine[BTO]." [BTO:0000047, http://en.wikipedia.org/wiki/Adrenal_gland] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "adrenal" RELATED [BTO:0000047] +synonym: "adrenal capsule" RELATED [BTO:0000047] +synonym: "adrenal medulla cell" RELATED [] +synonym: "atrabiliary capsule" RELATED [BTO:0000047] +synonym: "epinephric gland" RELATED [http://en.wikipedia.org/wiki/Adrenal_gland] +synonym: "epinephros" RELATED [BTO:0000047] +synonym: "glandula adrenalis" EXACT LATIN [http://en.wikipedia.org/wiki/Adrenal_gland] +synonym: "glandula suprarenalis" EXACT LATIN [http://en.wikipedia.org/wiki/Adrenal_gland] +synonym: "glandula suprarenalis" RELATED [BTO:0000047] +synonym: "interrenal gland" RELATED HOMOLOGY [GO:0030325] +synonym: "suprarenal capsule" RELATED [BTO:0000047] +synonym: "suprarenal gland" RELATED [http://en.wikipedia.org/wiki/Adrenal_gland] +xref: AAO:0010551 +xref: Adrenal:gland +xref: BTO:0000047 +xref: CALOHA:TS-0016 +xref: EFO:0000238 +xref: EMAPA:18426 +xref: EV:0100135 +xref: FMA:9604 +xref: GAID:446 +xref: galen:AdrenalGland +xref: http://linkedlifedata.com/resource/umls/id/C0001625 +xref: http://www.snomedbrowser.com/Codes/Details/181127006 +xref: MA:0000116 +xref: MAT:0000071 +xref: MESH:D000311 +xref: MIAA:0000071 +xref: NCIT:C12666 +xref: OpenCyc:Mx4rvXYiz5wpEbGdrcN5Y29ycA +xref: UMLS:C0001625 {source="ncithesaurus:Adrenal_Gland"} +xref: VHOG:0001141 +xref: XAO:0000164 +is_a: UBERON:0005172 ! abdomen element +is_a: UBERON:0006858 ! adrenal/interrenal gland +is_a: UBERON:0015212 ! lateral structure +relationship: has_developmental_contribution_from UBERON:0000926 {source="Wikipedia"} ! mesoderm +relationship: in_lateral_side_of UBERON:0000949 {source="FMA-abduced-lr"} ! endocrine system + +[Term] +id: UBERON:0002370 +name: thymus +def: "Anatomical structure of largely lymphoid tissue that functions in cell-mediated immunity by being the site where T cells develop." [http://en.wikipedia.org/wiki/Thymus, NLM:thymus] +subset: efo_slim +subset: major_organ +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "thymus gland" EXACT [] +synonym: "thymus organ" EXACT [] +xref: AAO:0010548 +xref: BTO:0001374 +xref: CALOHA:TS-1043 +xref: EFO:0000860 +xref: EHDAA2:0002017 +xref: EHDAA:9119 +xref: EMAPA:18768 +xref: EV:0100138 +xref: FMA:9607 +xref: GAID:464 +xref: http://en.wikipedia.org/wiki/Thymus +xref: http://linkedlifedata.com/resource/umls/id/C0040113 +xref: http://www.snomedbrowser.com/Codes/Details/118507000 +xref: MA:0000142 +xref: MAT:0000080 +xref: MESH:A06.407.850 +xref: MIAA:0000080 +xref: NCIT:C12433 +xref: OpenCyc:Mx4rvpIympwpEbGdrcN5Y29ycA +xref: TAO:0001078 +xref: UMLS:C0040113 {source="ncithesaurus:Thymus_Gland"} +xref: VHOG:0000253 +xref: XAO:0000163 +xref: ZFA:0001078 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0002368 {source="EHDAA2"} ! endocrine gland +is_a: UBERON:0004177 ! hemopoietic organ +is_a: UBERON:0005057 ! immune organ +is_a: UBERON:0005058 ! hemolymphoid system gland +relationship: develops_from UBERON:0005562 {source="ZFA"} ! thymus primordium +relationship: has_part UBERON:0003483 ! thymus lymphoid tissue +relationship: has_part UBERON:0003846 ! thymus epithelium +relationship: part_of UBERON:0000153 ! anterior region of body + +[Term] +id: UBERON:0002371 +name: bone marrow +def: "the soft tissue that fills the cavities of bones" [MGI:cwg, MP:0002397] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "medulla of bone" RELATED [BTO:0000141] +synonym: "medulla ossea" EXACT LATIN [BTO:0000141, FMA:9608] +synonym: "medulla ossium" EXACT LATIN [BTO:0000141, http://en.wikipedia.org/wiki/Bone_marrow] +synonym: "medullary bone" RELATED [] +xref: AAO:0011007 +xref: Bone:marrow +xref: BTO:0000141 +xref: BTO:0000829 +xref: CALOHA:TS-0087 +xref: EFO:0000868 +xref: EMAPA:32760 +xref: EV:0100046 +xref: FMA:9608 +xref: GAID:1287 +xref: galen:BoneMarrow +xref: http://linkedlifedata.com/resource/umls/id/C0005953 +xref: http://www.snomedbrowser.com/Codes/Details/421320006 +xref: MA:0000134 +xref: MAT:0000084 +xref: MESH:D001853 +xref: MIAA:0000084 +xref: NCIT:C12431 +xref: OpenCyc:Mx4rvVm-FpwpEbGdrcN5Y29ycA +xref: UMLS:C0005953 {source="ncithesaurus:Bone_Marrow"} +xref: VHOG:0001218 +xref: XAO:0000123 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0000479 ! tissue +intersection_of: has_part UBERON:0012429 ! hematopoietic tissue +intersection_of: part_of UBERON:0001474 ! bone element +relationship: has_part UBERON:0012429 ! hematopoietic tissue +relationship: part_of UBERON:0001474 ! bone element +relationship: part_of UBERON:0002390 {source="FMA", source="MA"} ! hematopoietic system +relationship: part_of UBERON:0002405 ! immune system + +[Term] +id: UBERON:0002372 +name: tonsil +def: "either of the two small almond-shaped masses of lymph tissue found on either side of the oropharynx" [MGI:cwg, MP:0002380] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "Mandel" RELATED [BTO:0001387] +xref: BTO:0001387 +xref: CALOHA:TS-1053 +xref: EFO:0001401 +xref: EMAPA:35871 +xref: EV:0100052 +xref: FMA:9609 +xref: GAID:341 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=671 +xref: http://en.wikipedia.org/wiki/Tonsil +xref: http://linkedlifedata.com/resource/umls/id/C0836921 +xref: http://linkedlifedata.com/resource/umls/id/C1519547 +xref: http://linkedlifedata.com/resource/umls/id/C1519548 +xref: MA:0000143 +xref: MESH:A03.867.603.925 +xref: NCIT:C12802 +xref: OpenCyc:Mx4rvVivrZwpEbGdrcN5Y29ycA +xref: UMLS:C0836921 {source="ncithesaurus:Tonsil"} +xref: UMLS:C1519547 {source="ncithesaurus:Tonsilar_Tissue"} +xref: UMLS:C1519548 {source="ncithesaurus:Tonsillar_Lymphoid_Tissue"} +xref: VHOG:0001139 +is_a: UBERON:0001962 ! gut-associated lymphoid tissue +disjoint_from: UBERON:0005351 ! paraflocculus +relationship: contributes_to_morphology_of UBERON:0001735 ! tonsillar ring +relationship: located_in UBERON:0000167 ! oral cavity +relationship: part_of UBERON:0001735 {source="cjm"} ! tonsillar ring + +[Term] +id: UBERON:0002373 +name: palatine tonsil +def: "tonsils on the left and right sides at the back of the throat. one of the mucosa-associated lymphoid tissues (MALT), located at the entrance to the upper respiratory and gastrointestinal tracts to protect the body from the entry of exogenous material through mucosal sites[WP]." [http://en.wikipedia.org/wiki/Palatine_tonsil] +subset: efo_slim +subset: uberon_slim +synonym: "faucial tonsil" EXACT [] +synonym: "Gaumenmandel@de" RELATED [BTO:0004714] +synonym: "tonsil" BROAD [] +synonym: "tonsilla palatina" RELATED LATIN [http://en.wikipedia.org/wiki/Palatine_tonsil] +xref: BTO:0004714 +xref: EFO:0001977 +xref: EMAPA:35644 +xref: EV:0100393 +xref: FMA:9610 +xref: http://linkedlifedata.com/resource/umls/id/C0040421 +xref: http://www.snomedbrowser.com/Codes/Details/265787001 +xref: MA:0000775 +xref: MAT:0000291 +xref: MIAA:0000291 +xref: NCIT:C33250 +xref: Palatine:tonsil +xref: UMLS:C0040421 {source="ncithesaurus:Palatine_Tonsil"} +xref: VHOG:0001140 +is_a: UBERON:0002372 ! tonsil +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0010023 {notes="the dorsal elongation of the second pouch endoderm of all mammals, with the exception of rodents, gives rise to the epithelial lining of palatine tonsils; in rodents, the ventral portion of the second pouch appears to degenerate whereas the remaining part is incorporated into the lateral border of the pharynx; it appears that rodents no longer require tonsils as their function is carried out by the NALT (Nose/Nasal-Associated Lymphoid Tissue) system in the upper respiratory tract", source="http://www.ncbi.nlm.nih.gov/pubmed/20144910", source="ISBN:1607950324", source="MP:anna"} ! dorsal part of pharyngeal pouch 2 +relationship: dubious_for_taxon NCBITaxon:9989 {source="http://www.ncbi.nlm.nih.gov/pubmed/20144910"} +relationship: has_developmental_contribution_from UBERON:0002539 {source="Wikipedia"} ! pharyngeal arch + +[Term] +id: UBERON:0002374 +name: metacarpal bone +def: "A bone that is part of the metacarpal skeleton." [http://en.wikipedia.org/wiki/Metacarpal_bone, https://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "metacarpal" EXACT [] +xref: EFO:0003886 +xref: EMAPA:36158 +xref: FMA:9612 +xref: galen:Metacarpal +xref: http://linkedlifedata.com/resource/umls/id/C0025526 +xref: http://www.snomedbrowser.com/Codes/Details/181977005 +xref: http://www.snomedbrowser.com/Codes/Details/425761003 +xref: MA:0000302 +xref: Metacarpal:bone +xref: NCIT:C12751 +xref: OpenCyc:Mx4rv1Bk45wpEbGdrcN5Y29ycA +xref: UMLS:C0025526 {source="ncithesaurus:Metacarpal_Bone"} +is_a: UBERON:0003607 ! forelimb long bone +is_a: UBERON:0003821 {is_inferred="true"} ! metapodium bone +is_a: UBERON:0012358 ! manual digitopodium bone +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0004453 ! metacarpus region +relationship: connected_to UBERON:0001435 ! carpal bone +relationship: connected_to UBERON:0001436 ! phalanx of manus +relationship: part_of UBERON:0010544 ! metacarpus skeleton + +[Term] +id: UBERON:0002375 +name: cricoid cartilage +def: "A cartilaginous ring that provides support for the arytenoid cartilages and forms the caudal part of the larynx." [AAO:LAP, FEED:rd, https://github.com/obophenotype/uberon/issues/257] +subset: pheno_slim +subset: uberon_slim +synonym: "cartilaginis cricoideae" RELATED PLURAL [http://en.wikipedia.org/wiki/Cricoid_cartilage] +synonym: "cartilago cricoidea" EXACT LATIN [http://en.wikipedia.org/wiki/Cricoid_cartilage] +synonym: "cartilago cricoidea" RELATED PLURAL [] +synonym: "cartilago cricotrachealis" RELATED [AAO:0000675] +synonym: "cricoid" RELATED [http://en.wikipedia.org/wiki/Cricoid_cartilage] +synonym: "cricoidea" RELATED [http://en.wikipedia.org/wiki/Cricoid_cartilage] +synonym: "innominate cartilage" RELATED [VHOG:0001308] +synonym: "krykoid cartilage" RELATED [http://en.wikipedia.org/wiki/Cricoid_cartilage] +xref: AAO:0000675 +xref: Cricoid:cartilage +xref: EHDAA2:0000326 +xref: EHDAA:9393 +xref: EMAPA:18696 +xref: FMA:9615 +xref: GAID:110 +xref: http://linkedlifedata.com/resource/umls/id/C0010323 +xref: http://www.snomedbrowser.com/Codes/Details/263484006 +xref: MA:0001762 +xref: MESH:A02.165.507.211 +xref: NCIT:C32400 +xref: UMLS:C0010323 {source="ncithesaurus:Cricoid_Cartilage"} +xref: VHOG:0001308 +is_a: UBERON:0001739 {source="MA"} ! laryngeal cartilage +relationship: composed_primarily_of UBERON:0001994 {source="Wikipedia"} ! hyaline cartilage tissue +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/RDruzinsky +relationship: develops_from UBERON:0010214 {source="EHDAA2"} ! cricoid pre-cartilage condensation + +[Term] +id: UBERON:0002376 +name: cranial muscle +alt_id: UBERON:0003899 +def: "Any skeletal muscle that is part of the head region." [http://orcid.org/0000-0002-6601-2165] +comment: defined generically so could in theory encompass FBbt:00003260 'skeletal muscle of head', or the muscle of a starfish Aristotle's lantern, but we restrict this to craniates. Skeletal muscles of the head originate from the non-segmented head mesoderm (Noden, 1983; Wachtler et al., 1984) +subset: efo_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "adult head muscle organ" NARROW [OBOL:automatic] +synonym: "cephalic muscle" EXACT [ZFA:0001652] +synonym: "cephalic musculature" EXACT [] +synonym: "cranial muscle" RELATED [ZFA:0001652] +synonym: "head muscle" EXACT [MA:0000578] +synonym: "head muscle organ" EXACT [OBOL:automatic] +synonym: "head muscles" RELATED [] +synonym: "muscle of head" EXACT [FMA:9616] +synonym: "muscle organ of adult head" EXACT [OBOL:automatic] +synonym: "muscle organ of head" EXACT [OBOL:automatic] +synonym: "musculus caput" EXACT [] +xref: AAO:0000107 +xref: BTO:0000021 +xref: EFO:0003524 +xref: EHDAA2:0000322 +xref: EMAPA:18172 +xref: FMA:9616 +xref: http://www.snomedbrowser.com/Codes/Details/244718003 +xref: MA:0000578 +xref: ZFA:0001652 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010959 ! craniocervical muscle +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: attaches_to UBERON:0003129 ! skull +intersection_of: part_of UBERON:0000033 ! head +relationship: attaches_to UBERON:0003129 ! skull +relationship: develops_from UBERON:0006904 {source="EHDAA2-abduced"} ! head mesenchyme from mesoderm +relationship: part_of UBERON:0004461 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! skeletal musculature of head + +[Term] +id: UBERON:0002377 +name: muscle of neck +def: "Any muscle that is part of the cervical (neck) region." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "muscle organ of neck" EXACT [OBOL:automatic] +synonym: "muscle organ of neck (volume)" EXACT [OBOL:automatic] +synonym: "neck (volume) muscle organ" EXACT [OBOL:automatic] +synonym: "neck muscle" EXACT [] +synonym: "neck muscle organ" EXACT [OBOL:automatic] +xref: EMAPA:36050 +xref: FMA:9617 +xref: GAID:149 +xref: http://linkedlifedata.com/resource/umls/id/C0027532 +xref: MA:0000587 +xref: MESH:D009334 +xref: NCIT:C33163 +xref: UMLS:C0027532 {source="ncithesaurus:Neck_Muscle"} +is_a: UBERON:0010959 ! craniocervical muscle +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0000974 ! neck +relationship: part_of UBERON:0004465 {source="prolog"} ! musculature of neck + +[Term] +id: UBERON:0002378 +name: muscle of abdomen +def: "Muscle (organ) which is a part of the abdomen. Examples: external oblique, rectus abdominis." [http://en.wikipedia.org/wiki/Abdominal_muscle] +subset: pheno_slim +subset: uberon_slim +synonym: "abdomen muscle" EXACT [] +synonym: "abdomen muscle organ" EXACT [OBOL:automatic] +synonym: "abdominal muscle" EXACT [] +synonym: "abdominal wall muscle" EXACT [] +synonym: "abdominal wall musculature" RELATED [EMAPA:35103] +synonym: "muscle organ of abdomen" EXACT [OBOL:automatic] +xref: Abdominal:muscle +xref: BTO:0001261 +xref: EMAPA:35103 +xref: FMA:9620 +xref: GAID:89 +xref: http://linkedlifedata.com/resource/umls/id/C0000739 +xref: http://www.snomedbrowser.com/Codes/Details/361352008 +xref: MA:0000520 +xref: MESH:D000009 +xref: NCIT:C32040 +xref: OpenCyc:Mx4rvlygNJwpEbGdrcN5Y29ycA +xref: UMLS:C0000739 {source="ncithesaurus:Abdominal_Muscle"} +is_a: UBERON:0003833 ! abdominal segment muscle +is_a: UBERON:0005172 ! abdomen element +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0000916 ! abdomen +relationship: part_of UBERON:0002343 {source="prolog"} ! abdomen musculature +relationship: part_of UBERON:0003697 ! abdominal wall + +[Term] +id: UBERON:0002379 +name: perineal muscle +def: "Any muscle organ that is part of a perineum [Automatically generated definition]." [OBOL:automatic] +synonym: "muscle of perineum" EXACT [] +synonym: "muscle organ of perineal region" EXACT [OBOL:automatic] +synonym: "muscle organ of perineum" EXACT [OBOL:automatic] +synonym: "perineal region muscle organ" EXACT [OBOL:automatic] +synonym: "perineum muscle organ" EXACT [OBOL:automatic] +xref: EMAPA:36629 +xref: FMA:9623 +xref: http://linkedlifedata.com/resource/umls/id/C0224382 +xref: MA:0000538 +xref: NCIT:C33300 +xref: UMLS:C0224382 {source="ncithesaurus:Perineal_Muscle"} +is_a: UBERON:0001325 ! muscle of pelvis +intersection_of: UBERON:0001630 ! muscle organ +intersection_of: part_of UBERON:0002356 ! perineum +relationship: part_of UBERON:0004486 {source="prolog"} ! musculature of perineum + +[Term] +id: UBERON:0002380 +name: trapezius muscle +def: "A large superficial muscle that extends longitudinally from the occipital bone to the lower thoracic vertebrae and laterally to the spine of the scapula (shoulder blade). Its functions are to move the scapulae and support the arm. The trapezius has three functional regions: the superior region (descending part), which supports the weight of the arm; the intermediate region (transverse part), which retracts the scapulae; and the inferior region (ascending part), which medially rotates and depresses the scapulae. [WP,unvetted]." [http://en.wikipedia.org/wiki/Trapezius_muscle] +subset: uberon_slim +synonym: "musculus trapezius" RELATED LATIN [http://en.wikipedia.org/wiki/Trapezius_muscle] +synonym: "spinotrapezius" RELATED [http://en.wikipedia.org/wiki/Trapezius_muscle] +synonym: "trapezius" EXACT [] +xref: EMAPA:18183 +xref: FMA:9626 +xref: http://linkedlifedata.com/resource/umls/id/C0224361 +xref: http://www.snomedbrowser.com/Codes/Details/181740005 +xref: MA:0002398 +xref: NCIT:C33809 +xref: Trapezius:muscle +xref: UMLS:C0224361 {source="ncithesaurus:Trapezius_Muscle"} +xref: VHOG:0000834 +is_a: UBERON:0001482 ! muscle of shoulder +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: develops_from UBERON:0010955 ! trapezius pre-muscle mass +relationship: has_muscle_antagonist UBERON:0001112 {source="dbpedia"} ! latissimus dorsi muscle +relationship: has_muscle_antagonist UBERON:0001125 {source="dbpedia"} ! serratus ventralis +relationship: has_muscle_insertion UBERON:0002497 {notes="posterior border of the lateral third of the clavicle acromion process and spine of scapula", source="dbpedia"} ! acromion +relationship: has_muscle_insertion UBERON:0007173 {notes="posterior border of the lateral third of the clavicle acromion process and spine of scapula", source="dbpedia"} ! lateral border of scapula +relationship: has_muscle_origin UBERON:0000351 {notes="external occipital protuberance nuchal ligament medial superior nuchal line spinous processes of vertebrae C7-T12", source="dbpedia"} ! nuchal ligament +relationship: has_muscle_origin UBERON:0001076 {notes="external occipital protuberance nuchal ligament medial superior nuchal line spinous processes of vertebrae C7-T12", source="dbpedia"} ! neural spine + +[Term] +id: UBERON:0002381 +name: pectoralis major +def: "The pectoralis major is a thick, fan-shaped muscle, situated at the upper front of the chest wall. It makes up the bulk of the chest muscles in the male and lies under the breast in the female. Underneath the pectoralis major is the pectoralis minor, a thin, triangular muscle. [WP,unvetted]." [http://en.wikipedia.org/wiki/Pectoralis_major_muscle] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "musculus pectoralis major" RELATED LATIN [http://en.wikipedia.org/wiki/Pectoralis_major_muscle] +synonym: "pectoralis major muscle" EXACT [] +synonym: "pectoralis major muscle structure" EXACT [] +xref: EHDAA2:0001424 +xref: EHDAA:8311 +xref: EMAPA:18179 +xref: FMA:9627 +xref: http://en.wikipedia.org/wiki/Pectoralis_major_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0585574 +xref: http://www.snomedbrowser.com/Codes/Details/181624003 +xref: MA:0002354 +xref: NCIT:C33284 +xref: UMLS:C0585574 {source="ncithesaurus:Pectoralis_Major"} +xref: VHOG:0000895 +is_a: UBERON:0001482 ! muscle of shoulder +is_a: UBERON:0001495 {source="FMA"} ! pectoral muscle +is_a: UBERON:0003897 ! axial muscle +relationship: has_muscle_insertion UBERON:0000976 {notes="Lateral lip of intertubercular groove of the humerus", source="dbpedia"} ! humerus +relationship: has_muscle_origin UBERON:0000975 {notes="anterior surface of the sternum and the superior six costal cartilages and the aponeurosis of the external oblique muscle", source="dbpedia"} ! sternum +relationship: has_muscle_origin UBERON:0001105 {notes="anterior surface of the medial half of the clavicle", source="dbpedia"} ! clavicle bone +relationship: innervated_by UBERON:0003726 {notes="lateral pectoral nerve and medial pectoral nerveClavicular head: C5 and C6Sternocostal head: C7 C8 and T1", source="dbpedia"} ! thoracic nerve +relationship: superficial_to UBERON:0001100 ! pectoralis minor + +[Term] +id: UBERON:0002382 +name: rectus abdominis muscle +def: "The rectus abdominis muscle is a paired muscle running vertically on each side of the anterior wall of the abdomen. There are two parallel sets of muscles, separated by a midline band of connective tissue called the linea alba (white line). It extends from the pubic symphysis/pubic crest inferiorly to the xiphisternum/xiphoid process and lower costal cartilages (5-7) superiorly. It is contained in the Rectus sheath. The rectus is usually crossed by three fibrous bands licked by the tendinous inscriptions. [WP,modified]." [http://en.wikipedia.org/wiki/Rectus_abdominis_muscle] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "m. rectus abdominis" EXACT [AAO:0010789] +synonym: "musculus rectus abdominis" EXACT [AAO:0010789] +synonym: "rectus abdominis" EXACT [MA:0002364] +xref: AAO:0010789 +xref: EHDAA2:0001595 +xref: EHDAA:8252 +xref: EMAPA:18164 +xref: FMA:9628 +xref: GAID:142 +xref: http://en.wikipedia.org/wiki/Rectus_abdominis_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0206066 +xref: http://www.snomedbrowser.com/Codes/Details/256672008 +xref: MA:0002364 +xref: MESH:D017568 +xref: NCIT:C33449 +xref: UMLS:C0206066 {source="ncithesaurus:Rectus_Abdominis"} +xref: VHOG:0000863 +xref: XAO:0004128 +is_a: UBERON:0002461 ! anterior abdominal wall muscle +is_a: UBERON:0003897 ! axial muscle +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: has_muscle_insertion UBERON:0000975 ! sternum +relationship: has_muscle_origin UBERON:0007832 ! pelvic girdle skeleton +relationship: part_of UBERON:0008777 {source="XAO"} ! hypaxial musculature + +[Term] +id: UBERON:0002383 +name: supraspinatus muscle +def: "The supraspinatus is a relatively small muscle of the upper limb that takes its name from its origin from the supraspinous fossa superior to the spine of the scapula. It is one of the four rotator cuff muscles and also abducts the arm at the shoulder. The spine of the scapula separates the supraspinatus muscle from the infraspinatus muscle, which originates below the spine. [WP,unvetted]." [http://en.wikipedia.org/wiki/Supraspinatus_muscle] +subset: pheno_slim +subset: uberon_slim +synonym: "musculus supraspinatus" EXACT LATIN [http://en.wikipedia.org/wiki/Supraspinatus_muscle] +synonym: "supraspinatus" EXACT [MA:0002389] +xref: EHDAA2:0001967 +xref: EHDAA:8319 +xref: EMAPA:18182 +xref: FMA:9629 +xref: http://linkedlifedata.com/resource/umls/id/C0584869 +xref: http://www.snomedbrowser.com/Codes/Details/181626001 +xref: MA:0002389 +xref: NCIT:C33709 +xref: Supraspinatus:muscle +xref: UMLS:C0584869 {source="ncithesaurus:Supraspinatus"} +xref: VHOG:0000848 +is_a: UBERON:0001482 ! muscle of shoulder +is_a: UBERON:0010891 ! pectoral complex muscle +is_a: UBERON:0034908 ! scapular muscle +relationship: has_muscle_insertion UBERON:0011187 {notes="middle facet of greater tubercle of the humerus", source="dbpedia"} ! ventral tubercle of humerus +relationship: has_muscle_origin UBERON:0006849 {notes="supraspinous fossa of the scapula", source="dbpedia"} ! scapula +relationship: part_of UBERON:0003683 {source="Wikipedia"} ! rotator cuff + +[Term] +id: UBERON:0002384 +name: connective tissue +def: "Tissue with cells that deposit non-polarized extracellular matrix including connective tissue fibers and ground substance." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, https://github.com/obophenotype/uberon/issues/23, PSPUB:0000170, VSAO:0000017] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "Bindegewebe" RELATED [BTO:0000421] +synonym: "portion of connective tissue" EXACT [FMA:9640] +synonym: "textus connectivus" EXACT [] +xref: AAO:0000098 +xref: BTO:0000421 +xref: CALOHA:TS-2009 +xref: EFO:0000952 +xref: EMAPA:35251 +xref: FMA:9640 +xref: GAID:100 +xref: galen:ConnectiveTissue +xref: http://linkedlifedata.com/resource/umls/id/C0009780 +xref: http://www.snomedbrowser.com/Codes/Details/361919005 +xref: MA:0000011 +xref: MAT:0000301 +xref: MESH:D003238 +xref: MIAA:0000301 +xref: NCIT:C12374 +xref: OpenCyc:Mx4rv-aBgZwpEbGdrcN5Y29ycA +xref: TAO:0001641 +xref: UMLS:C0009780 {source="ncithesaurus:Connective_Tissue"} +xref: VSAO:0000017 +xref: XAO:0001017 +xref: ZFA:0001632 +is_a: UBERON:0000479 ! tissue +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/wdahdul + +[Term] +id: UBERON:0002385 +name: muscle tissue +def: "Muscle tissue is a contractile tissue made up of actin and myosin fibers[GO]." [GO:0060537, http://en.wikipedia.org/wiki/Muscle_tissue, https://sourceforge.net/tracker/index.php?func=detail&aid=2801266&group_id=36855&atid=440764] +comment: Vertebrate muscle is categorized into three major muscle types defined by their structural and functional properties: skeletal, cardiac and smooth. In Dmel the counterparts are somatic, heart/cardiac and visceral. Here we take a cell type based approach. +subset: uberon_slim +synonym: "muscular tissue" EXACT SENSU [] +synonym: "portion of muscle tissue" EXACT [FMA:9641] +synonym: "textus muscularis" EXACT [] +xref: AAO:0000306 +xref: AEO:0000122 +xref: CALOHA:TS-0642 +xref: EHDAA2:0003122 +xref: EMAPA:32715 +xref: FMA:9641 +xref: galen:MuscleTissue +xref: http://linkedlifedata.com/resource/umls/id/C2328219 +xref: http://www.snomedbrowser.com/Codes/Details/91727004 +xref: MA:0002437 +xref: MESH:D009132 +xref: Muscle:tissue +xref: NCIT:C12435 +xref: UMLS:C2328219 {source="ncithesaurus:Muscle_Tissue"} +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +disjoint_from: UBERON:0003714 ! neural tissue +relationship: part_of UBERON:0001015 ! musculature + +[Term] +id: UBERON:0002386 +name: forelimb zeugopod +def: "The middle limb segment of the pectoral free limb, between the autopod and stylopod segments. Includes as parts the forelimb zeugopodial skeleton, which includes as parts the radius and ulna, or their cartilage precursors, or evolutionary variants." [PHENOSCAPE:curators] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "antebrachial region" EXACT [] +synonym: "antebrachium" EXACT [http://en.wikipedia.org/wiki/Forearm] +synonym: "antebrachium" EXACT [VSAO:0005058] +synonym: "antebrachium" RELATED LATIN [http://en.wikipedia.org/wiki/Forearm] +synonym: "antibrachium" EXACT [] +synonym: "arm middle limb segment" EXACT [OBOL:automatic] +synonym: "arm zeugopod" EXACT [OBOL:automatic] +synonym: "brachial region middle limb segment" EXACT [OBOL:automatic] +synonym: "brachial region zeugopod" EXACT [OBOL:automatic] +synonym: "fore epipodium" RELATED [] +synonym: "forearm" EXACT [] +synonym: "forelimb epipodium" EXACT [] +synonym: "forelimb zeugopodium" EXACT [] +synonym: "forelimb zygopod" EXACT [] +synonym: "intermediate segment of free upper limb" EXACT [] +synonym: "lower arm" EXACT HUMAN_PREFERRED [MA:0000034] +synonym: "lower segment of arm" EXACT [] +synonym: "middle limb segment of arm" EXACT [OBOL:automatic] +synonym: "middle limb segment of brachial region" EXACT [OBOL:automatic] +synonym: "middle limb segment of forelimb" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic] +synonym: "regio antebrachialis" EXACT LATIN [FMA:9663, FMA:TA] +synonym: "wing zeugopod" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +synonym: "zeugopod of arm" EXACT [] +synonym: "zeugopod of brachial region" EXACT [OBOL:automatic] +synonym: "zeugopod of forelimb" EXACT [] +synonym: "zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic] +xref: BTO:0001447 +xref: CALOHA:TS-2205 +xref: EFO:0003053 +xref: EHDAA2:0000553 +xref: EHDAA:4172 +xref: EHDAA:6218 +xref: EMAPA:17417 +xref: FMA:9663 +xref: GAID:55 +xref: galen:Forearm +xref: http://en.wikipedia.org/wiki/Forearm +xref: http://linkedlifedata.com/resource/umls/id/C0016536 +xref: http://www.snomedbrowser.com/Codes/Details/362741001 +xref: MA:0000034 +xref: MESH:D005542 +xref: NCIT:C32628 +xref: OpenCyc:Mx4rvVjnmpwpEbGdrcN5Y29ycA +xref: UMLS:C0016536 {source="ncithesaurus:Forearm"} +xref: VHOG:0000341 +xref: VSAO:0005058 +is_a: UBERON:0002471 ! zeugopod +is_a: UBERON:0008785 ! upper limb segment +intersection_of: UBERON:0002471 ! zeugopod +intersection_of: part_of UBERON:0002102 ! forelimb +relationship: has_skeleton UBERON:0010703 ! forelimb zeugopod skeleton +relationship: part_of UBERON:0001460 {source="MA"} ! arm + +[Term] +id: UBERON:0002387 +name: pes +def: "distal portion of the hind limb, including tarsal region, metatarsal region and digits." [http://en.wikipedia.org/wiki/Foot, http://en.wikipedia.org/wiki/Pes_(anatomy)] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "foot" EXACT HUMAN_PREFERRED [MA:0000044] +synonym: "hind foot" NARROW [] +synonym: "hind limb autopodium" RELATED [VHOG:0000350] +synonym: "hind paw" NARROW SENSU [EMAPA:17428, OBOL:automatic] +synonym: "hind-paw" NARROW SENSU [EMAPA:17428] +synonym: "hindfeet" NARROW PLURAL [] +synonym: "hindfoot" NARROW [] +synonym: "hindfoot of quadruped" NARROW [] +synonym: "hindlimb autopod" EXACT [OBOL:automatic] +synonym: "hindlimb autopodium" EXACT [OBOL:automatic] +synonym: "hindlimb distal free limb segment" EXACT [OBOL:automatic] +synonym: "hindpaw" NARROW SENSU [MA:0000044] +synonym: "pes" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "terminal segment of free lower limb" EXACT [] +xref: BTO:0000476 +xref: CALOHA:TS-0377 +xref: EFO:0003065 +xref: EHDAA2:0000546 +xref: EMAPA:17459 +xref: FMA:9664 +xref: GAID:40 +xref: galen:Foot +xref: http://linkedlifedata.com/resource/umls/id/C0016504 +xref: http://www.snomedbrowser.com/Codes/Details/302545001 +xref: MA:0000044 +xref: MESH:D005528 +xref: NCIT:C32622 +xref: OpenCyc:Mx4rvVi-k5wpEbGdrcN5Y29ycA +xref: Pes:(anatomy) +xref: UMLS:C0016504 {source="ncithesaurus:Foot"} +xref: VHOG:0000350 +is_a: UBERON:0002470 ! autopod region +is_a: UBERON:0008784 ! lower limb segment +intersection_of: UBERON:0002470 ! autopod region +intersection_of: part_of UBERON:0002103 ! hindlimb +relationship: develops_from UBERON:0006871 ! embryonic footplate +relationship: has_skeleton UBERON:0001445 ! skeleton of pes + +[Term] +id: UBERON:0002389 +name: manual digit +alt_id: UBERON:0000028 +def: "A digit that is part of a manus (hand)." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "digit of hand" EXACT [FMA:9666] +synonym: "digit of manus" EXACT [] +synonym: "digitus manus" EXACT [] +synonym: "finger" EXACT [FMA:9666] +synonym: "fore digit" EXACT [AAO:0000857, XAO:0003036] +synonym: "forelimb digit" EXACT [] +synonym: "hand digit" EXACT [MA:0000041] +synonym: "manual digit (phalangeal portion) plus soft tissue" EXACT COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +xref: AAO:0000857 +xref: BTO:0004669 +xref: EHDAA2:0000404 +xref: EMAPA:32642 +xref: FMA:9666 +xref: GAID:57 +xref: galen:Finger +xref: http://en.wikipedia.org/wiki/Finger +xref: http://linkedlifedata.com/resource/umls/id/C0016129 +xref: http://www.snomedbrowser.com/Codes/Details/283992002 +xref: MA:0000041 +xref: MESH:D005385 +xref: NCIT:C32608 +xref: NLXANAT:20090602 +xref: OpenCyc:Mx4rvVi_f5wpEbGdrcN5Y29ycA +xref: UMLS:C0016129 {source="ncithesaurus:Finger"} +xref: XAO:0003036 +is_a: UBERON:0002544 ! digit +intersection_of: UBERON:0002544 ! digit +intersection_of: part_of UBERON:0002102 ! forelimb +relationship: part_of UBERON:0012141 {source="PHENOSCAPE:ni"} ! manual digitopodium region +relationship: part_of UBERON:5002389 ! manual digit plus metapodial segment + +[Term] +id: UBERON:0002390 +name: hematopoietic system +def: "Anatomical system that is involved in the production of hematopoietic cells." [http://en.wikipedia.org/wiki/Haematopoiesis] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "Blutbildungssystem" RELATED [BTO:0000570] +synonym: "haematological system" EXACT [] +synonym: "haematopoietic system" RELATED [] +synonym: "haemopoietic system" EXACT [] +synonym: "hematological system" RELATED [] +synonym: "hematolymphoid system" RELATED [] +synonym: "hemopoietic system" RELATED [] +synonym: "organa haemopoietica" EXACT [] +xref: AAO:0011002 +xref: BTO:0000570 +xref: CALOHA:TS-0449 +xref: EFO:0000798 +xref: EMAPA:35402 +xref: EV:0100045 +xref: FMA:9667 +xref: GAID:1008 +xref: http://en.wikipedia.org/wiki/Haematopoiesis +xref: http://linkedlifedata.com/resource/umls/id/C0018957 +xref: http://www.snomedbrowser.com/Codes/Details/362587009 +xref: MA:0002434 +xref: MAT:0000022 +xref: MESH:D006413 +xref: MIAA:0000022 +xref: NCIT:C12909 +xref: TAO:0005023 +xref: UMLS:C0018957 {source="ncithesaurus:Hematopoietic_System"} +xref: VHOG:0001624 +xref: XAO:0000122 +xref: ZFA:0005023 +is_a: UBERON:0000467 ! anatomical system +is_a: UBERON:0004120 ! mesoderm-derived structure +disjoint_from: UBERON:0002405 ! immune system +disjoint_from: UBERON:0002416 ! integumental system +disjoint_from: UBERON:0002423 ! hepatobiliary system +disjoint_from: UBERON:0004456 ! entire sense organ system +relationship: develops_from UBERON:0003061 {evidence="definitional"} ! blood island +relationship: part_of UBERON:0002193 {source="FMA"} ! hemolymphoid system + +[Term] +id: UBERON:0002391 +name: lymph +def: "Lymph is the fluid that is formed when interstitial fluid enters the conduits of the lymphatic system through lymph capillaries[WP]." [http://en.wikipedia.org/wiki/Lymph] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "lympha" RELATED LATIN [http://en.wikipedia.org/wiki/Lymph] +xref: BTO:0000855 +xref: CALOHA:TS-0580 +xref: EFO:0000871 +xref: ENVO:02000041 +xref: EV:0100049 +xref: FMA:9671 +xref: GAID:1186 +xref: galen:Lymph +xref: http://en.wikipedia.org/wiki/Lymph +xref: http://linkedlifedata.com/resource/umls/id/C0024202 +xref: MA:0002520 +xref: MAT:0000055 +xref: MESH:A12.207.630 +xref: MIAA:0000055 +xref: NCIT:C13252 +xref: OpenCyc:Mx4rvpDOU5wpEbGdrcN5Y29ycA +xref: UMLS:C0024202 {source="ncithesaurus:Lymph"} +xref: VHOG:0001590 +xref: ZFA:0005658 +is_a: UBERON:0000179 ! haemolymphatic fluid +relationship: develops_from UBERON:0000913 ! interstitial fluid +relationship: part_of UBERON:0006558 ! lymphatic part of lymphoid system +relationship: transformation_of UBERON:0000913 ! interstitial fluid + +[Term] +id: UBERON:0002392 +name: nasolacrimal duct +def: "the paired channels leading from the lacrimal sacs to the inferior meatus of the nose, through which tears are conducted through the nasal cavity" [ISBN:0-683-40008-8, MP:0008969] +subset: pheno_slim +subset: uberon_slim +synonym: "d. nasolacrimalis" RELATED LATIN [http://en.wikipedia.org/wiki/Nasolacrimal_duct] +synonym: "nasolacrimal duct - posterior naris" BROAD [VHOG:0000664] +synonym: "tear duct" RELATED [http://en.wikipedia.org/wiki/Nasolacrimal_duct] +xref: AAO:0000643 +xref: EHDAA2:0001237 +xref: EHDAA:7849 +xref: EHDAA:9094 +xref: EMAPA:17853 +xref: FMA:9703 +xref: GAID:902 +xref: http://linkedlifedata.com/resource/umls/id/C0027437 +xref: http://www.snomedbrowser.com/Codes/Details/280643009 +xref: MA:0001299 +xref: MESH:D009301 +xref: Nasolacrimal:duct +xref: NCIT:C33161 +xref: OpenCyc:Mx4rv6PJy5wpEbGdrcN5Y29ycA +xref: UMLS:C0027437 {source="ncithesaurus:Nasolacrimal_Duct"} +xref: VHOG:0000664 +is_a: UBERON:0000025 ! tube +is_a: UBERON:0000058 ! duct +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: channel_for UBERON:0001827 ! secretion of lacrimal gland +relationship: connects UBERON:0001351 ! lacrimal sac +relationship: connects UBERON:0001707 ! nasal cavity +relationship: contributes_to_morphology_of UBERON:0001750 ! lacrimal apparatus +relationship: develops_from UBERON:0006266 ! nasolacrimal groove +relationship: has_part UBERON:0007602 ! stratified columnar epithelium +relationship: part_of UBERON:0001850 ! lacrimal drainage system + +[Term] +id: UBERON:0002393 +name: pharyngotympanic tube +def: "Organ with organ cavity which connects the cavity of the middle ear to the cavity of the pharynx. Examples: There are only two pharyngotympanic tubes, the right and the left pharyngotympanic tubes.[FMA]" [FMA:FMA, http://en.wikipedia.org/wiki/Eustachian_tube] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "auditory tube" EXACT [MA:0000255] +synonym: "eustachian tube" RELATED [] +synonym: "internal auditory tube" EXACT [] +synonym: "pharyngo-tympanic tube" EXACT [MA:0000255] +synonym: "tuba auditiva" EXACT LATIN [FMA:9705, FMA:TA] +synonym: "tuba auditiva; tuba auditoria; tuba auditivea" RELATED LATIN [http://en.wikipedia.org/wiki/Eustachian_tube] +synonym: "tuba auditoria" EXACT LATIN [FMA:9705, FMA:TA] +synonym: "tuba pharyngotympanica" RELATED LATIN [] +xref: AAO:0000146 +xref: AAO:0011016 +xref: EMAPA:17601 +xref: Eustachian:tube +xref: EV:0100359 +xref: FMA:9705 +xref: GAID:869 +xref: http://linkedlifedata.com/resource/umls/id/C0015183 +xref: MA:0000255 +xref: NCIT:C12500 +xref: UMLS:C0015183 {source="ncithesaurus:Eustachian_Tube"} +xref: VHOG:0001145 +xref: XAO:0000213 +is_a: UBERON:0000062 {source="FMA"} ! organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: has_developmental_contribution_from UBERON:0010020 {source="UBERON:0010062"} ! tubotympanic recess epithelium +relationship: has_part UBERON:0010062 ! pharyngotympanic tube epithelium +relationship: part_of UBERON:0001756 ! middle ear + +[Term] +id: UBERON:0002394 +name: bile duct +def: "Any of the ducts that form the biliary tree, carrying bile from the liver to the small intestine." [http://en.wikipedia.org/wiki/Bile_duct, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "bile tube" RELATED [] +synonym: "biliary duct" RELATED [FMA:9706] +synonym: "gall duct" RELATED [BTO:0000122] +synonym: "hepatic duct" RELATED INCONSISTENT [ZFA:0001100] +xref: AAO:0011019 +xref: Bile:duct +xref: BTO:0000122 +xref: CALOHA:TS-0075 +xref: EHDAA2:0000741 +xref: EMAPA:35171 +xref: EV:0100091 +xref: FMA:9706 +xref: GAID:280 +xref: http://linkedlifedata.com/resource/umls/id/C0005400 +xref: http://www.snomedbrowser.com/Codes/Details/276157007 +xref: MA:0000354 +xref: MESH:D001652 +xref: NCIT:C12376 +xref: OpenCyc:Mx4rvdCds5wpEbGdrcN5Y29ycA +xref: TAO:0001100 +xref: UMLS:C0005400 {source="ncithesaurus:Bile_Duct"} +xref: VHOG:0000212 +xref: XAO:0000134 +xref: ZFA:0001100 +is_a: UBERON:0000025 ! tube +is_a: UBERON:0003928 ! digestive system duct +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000058 ! duct +intersection_of: part_of UBERON:0001173 ! biliary tree +relationship: channel_for UBERON:0001970 ! bile +relationship: contributes_to_morphology_of UBERON:0001173 ! biliary tree +relationship: develops_from UBERON:0008835 {source="XAO"} ! hepatic diverticulum +relationship: part_of UBERON:0001173 {source="EMAPA", source="MA"} ! biliary tree + +[Term] +id: UBERON:0002395 +name: talus +def: "A proximal tarsal bone resulting from fusion of intermedium and fibulare." [http://en.wikipedia.org/wiki/Talus_bone, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "astragaloid bone" RELATED [BTO:0002354] +synonym: "astragalus" RELATED [http://en.wikipedia.org/wiki/Talus_bone, ISBN:0073040584, MA:000135] +synonym: "astragalus bone" RELATED [http://en.wikipedia.org/wiki/Talus_bone, ISBN:0073040584] +synonym: "major ankle bone" RELATED [] +synonym: "os tarsi tibiale" RELATED [BTO:0002354] +synonym: "os trigonum" RELATED [http://en.wikipedia.org/wiki/Talus_bone] +xref: BTO:0002354 +xref: EMAPA:19135 +xref: FMA:9708 +xref: GAID:196 +xref: galen:Talus +xref: http://linkedlifedata.com/resource/umls/id/C0039277 +xref: http://www.snomedbrowser.com/Codes/Details/182098005 +xref: MA:0001351 +xref: MESH:A02.835.232.300.710.780 +xref: NCIT:C52799 +xref: Talus:bone +xref: UMLS:C0039277 {source="ncithesaurus:Talus"} +is_a: UBERON:0011679 ! proximal tarsal bone +intersection_of: UBERON:0011679 ! proximal tarsal bone +intersection_of: has_fused_element UBERON:0011678 ! hindlimb intermedium bone +intersection_of: has_fused_element UBERON:0012126 ! fibulare +relationship: connected_to UBERON:0000979 ! tibia +relationship: has_fused_element UBERON:0011678 ! hindlimb intermedium bone +relationship: has_fused_element UBERON:0012126 ! fibulare + +[Term] +id: UBERON:0002396 +name: vomer +def: "the triangular flat bone of the nasal septum" [ISBN:0-683-40008-8, MP:0000098] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "prevomer" RELATED [TAO:0000308] +synonym: "vomer bone" EXACT [] +xref: AAO:0000633 +xref: FMA:9710 +xref: http://en.wikipedia.org/wiki/Vomer +xref: http://linkedlifedata.com/resource/umls/id/C0242403 +xref: http://www.snomedbrowser.com/Codes/Details/272678009 +xref: MA:0001496 +xref: NCIT:C33888 +xref: OpenCyc:Mx4rv6jKWZwpEbGdrcN5Y29ycA +xref: TAO:0000308 +xref: UMLS:C0242403 {source="ncithesaurus:Vomer"} +xref: ZFA:0000308 +is_a: UBERON:0008001 {source="FMA"} ! irregular bone +is_a: UBERON:0011597 ! bone of upper jaw +is_a: UBERON:0012071 ! palate bone +relationship: contributes_to_morphology_of UBERON:0011156 ! facial skeleton +relationship: part_of UBERON:0011085 ! palatoquadrate arch + +[Term] +id: UBERON:0002397 +name: maxilla +def: "The bone which normally forms the lateral upper jaw in osteichthyans, including tetrapods." [http://en.wikipedia.org/wiki/Maxilla, http://palaeos.com/vertebrates/glossary/glossaryM.html] +comment: Fusion of maxilla + premaxilla +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "maxillae" RELATED PLURAL [] +synonym: "maxillary bone" RELATED [http://en.wikipedia.org/wiki/Maxilla] +synonym: "upper jaw bone" BROAD [] +xref: AAO:0000285 +xref: CALOHA:TS-2217 +xref: EHDAA2:0001068 +xref: EHDAA:8043 +xref: EMAPA:17639 +xref: FMA:9711 +xref: GAID:220 +xref: galen:Maxilla +xref: http://en.wikipedia.org/wiki/Maxilla +xref: http://linkedlifedata.com/resource/umls/id/C0024947 +xref: http://www.snomedbrowser.com/Codes/Details/181813003 +xref: MA:0001491 +xref: MESH:D008437 +xref: NCIT:C26470 +xref: TAO:0000270 +xref: UMLS:C0024947 {source="ncithesaurus:Maxilla"} +xref: VHOG:0001021 +xref: VSAO:0000207 +xref: ZFA:0000270 +is_a: UBERON:0002514 ! intramembranous bone +is_a: UBERON:0008193 {source="FMA"} ! pneumatized bone +is_a: UBERON:0008907 {source="VSAO"} ! dermal bone +is_a: UBERON:0011597 ! bone of upper jaw +is_a: UBERON:0015212 ! lateral structure +relationship: adjacent_to UBERON:0002244 ! premaxilla +relationship: contributes_to_morphology_of UBERON:0001708 ! jaw skeleton +relationship: develops_from UBERON:0010334 {source="EHDAA2"} ! maxillary process mesenchyme from neural crest +relationship: in_lateral_side_of UBERON:0011156 {source="FMA-abduced-lr"} ! facial skeleton +relationship: part_of UBERON:0003113 {notes="facial series", source="ISBN:0073040584"} ! dermatocranium + +[Term] +id: UBERON:0002398 +name: manus +def: "distal segment of the fore limb, including carpal region, metacarpal region and digits." [http://en.wikipedia.org/wiki/Hand, http://en.wikipedia.org/wiki/Manus_(anatomy)] +subset: pheno_slim +subset: uberon_slim +synonym: "fore foot" NARROW INCONSISTENT [] +synonym: "fore paw" NARROW SENSU [EMAPA:17428, OBOL:automatic] +synonym: "fore-paw" NARROW SENSU [EMAPA:17428] +synonym: "forefeet" NARROW PLURAL [] +synonym: "forefoot" NARROW INCONSISTENT [] +synonym: "forefoot of quadruped" NARROW [] +synonym: "forelimb autopod" EXACT [OBOL:automatic] +synonym: "forelimb autopodium" EXACT [OBOL:automatic] +synonym: "forepaw" NARROW SENSU [MA:0000037] +synonym: "hand" EXACT HUMAN_PREFERRED [MA:0000037] +synonym: "hand region" EXACT [EHDAA2:0000728] +synonym: "terminal segment of free upper limb" EXACT [] +xref: AAO:0010803 +xref: BTO:0004668 +xref: CALOHA:TS-2213 +xref: EHDAA2:0000728 +xref: EMAPA:17428 +xref: FMA:9712 +xref: GAID:56 +xref: galen:Hand +xref: http://linkedlifedata.com/resource/umls/id/C0018563 +xref: http://www.snomedbrowser.com/Codes/Details/302539009 +xref: MA:0000037 +xref: Manus:(anatomy) +xref: MESH:D006225 +xref: NCIT:C32712 +xref: NLXANAT:20090603 +xref: OpenCyc:Mx4rvViGVZwpEbGdrcN5Y29ycA +xref: UMLS:C0018563 {source="ncithesaurus:Hand"} +xref: VHOG:0000344 +is_a: UBERON:0002470 ! autopod region +is_a: UBERON:0008785 ! upper limb segment +intersection_of: UBERON:0002470 ! autopod region +intersection_of: part_of UBERON:0002102 ! forelimb +relationship: develops_from UBERON:0006875 ! embryonic handplate +relationship: has_skeleton UBERON:0001442 ! skeleton of manus + +[Term] +id: UBERON:0002399 +name: lesser omentum +def: "The double layer of peritoneum that extends from the liver to the lesser curvature of the stomach and the start of the duodenum. [WP,unvetted]." [http://en.wikipedia.org/wiki/Lesser_omentum] +subset: uberon_slim +synonym: "gastrohepatic omentum" RELATED [http://en.wikipedia.org/wiki/Lesser_omentum] +synonym: "omentum minus" RELATED LATIN [http://en.wikipedia.org/wiki/Lesser_omentum] +synonym: "small omentum" RELATED [http://en.wikipedia.org/wiki/Lesser_omentum] +xref: EHDAA2:0000991 +xref: EHDAA:4858 +xref: EMAPA:17890 +xref: EV:0100086 +xref: FMA:9715 +xref: http://linkedlifedata.com/resource/umls/id/C0230260 +xref: http://www.snomedbrowser.com/Codes/Details/362712005 +xref: Lesser:omentum +xref: MA:0001623 +xref: NCIT:C32981 +xref: UMLS:C0230260 {source="ncithesaurus:Lesser_Omentum"} +xref: VHOG:0000357 +is_a: UBERON:0003688 ! omentum +is_a: UBERON:0009870 ! zone of stomach +relationship: develops_from UBERON:0005626 {source="EHDAA2", source="Wikipedia"} ! ventral mesogastrium +relationship: part_of UBERON:0005626 {source="MA"} ! ventral mesogastrium + +[Term] +id: UBERON:0002400 +name: parietal pleura +def: "The outer serous membrane of the pulmonary pleural." [http://en.wikipedia.org/wiki/Pulmonary_pleurae, UBERON:cjm] +comment: the part of the pleura external to the visceral pleura. It lines the inner surface of the chest wall, covers the diaphragm, and is reflected over the structures occupying the middle of the thorax +subset: pheno_slim +subset: uberon_slim +synonym: "pleura parietalis" RELATED LATIN [http://en.wikipedia.org/wiki/Parietal_pleura] +xref: EMAPA:16776 +xref: FMA:9733 +xref: http://linkedlifedata.com/resource/umls/id/C0225777 +xref: http://www.snomedbrowser.com/Codes/Details/361998003 +xref: MA:0002488 +xref: NCIT:C33273 +xref: OpenCyc:Mx4rvv2Uq5wpEbGdrcN5Y29ycA +xref: Parietal:pleura +xref: UMLS:C0225777 {source="ncithesaurus:Parietal_Pleura"} +xref: VHOG:0001495 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0004923 ! organ component layer +intersection_of: UBERON:0004923 ! organ component layer +intersection_of: adjacent_to UBERON:0002224 ! thoracic cavity +intersection_of: part_of UBERON:0000977 ! pleura +relationship: adjacent_to UBERON:0002224 ! thoracic cavity +relationship: contributes_to_morphology_of UBERON:0000977 ! pleura +relationship: innervated_by UBERON:0003727 ! intercostal nerve +relationship: part_of UBERON:0000977 ! pleura + +[Term] +id: UBERON:0002401 +name: visceral pleura +def: "The inner serous membrane of the pulmonary pleural. The visceral pleura lines the lungs." [http://en.wikipedia.org/wiki/Pulmonary_pleurae, UBERON:cjm] +subset: pheno_slim +subset: uberon_slim +synonym: "lung mesothelium" RELATED [EHDAA2:0002205] +synonym: "lung pleura" RELATED [] +synonym: "pleura pulmonalis" EXACT LATIN [FMA:9734, FMA:TA] +synonym: "pleura visceralis" EXACT LATIN [http://en.wikipedia.org/wiki/Visceral_pleura] +synonym: "pleura visceralis (pulmonalis)" EXACT [] +synonym: "pulmonary pleura" RELATED INCONSISTENT [FMA:9734] +synonym: "pulmonary visceral pleura" EXACT [] +xref: EHDAA2:0002205 +xref: EMAPA:16777 +xref: FMA:9734 +xref: http://linkedlifedata.com/resource/umls/id/C0225776 +xref: http://www.snomedbrowser.com/Codes/Details/361997008 +xref: MA:0002489 +xref: NCIT:C33881 +xref: OpenCyc:Mx4rwNFqppwpEbGdrcN5Y29ycA +xref: UMLS:C0225776 {source="ncithesaurus:Visceral_Pleura"} +xref: VHOG:0001496 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0022350 ! visceral serous membrane +intersection_of: UBERON:0004923 ! organ component layer +intersection_of: adjacent_to UBERON:0002048 ! lung +intersection_of: part_of UBERON:0000977 ! pleura +relationship: adjacent_to UBERON:0002048 ! lung +relationship: attaches_to UBERON:0008946 ! lung parenchyma +relationship: contributes_to_morphology_of UBERON:0000977 ! pleura +relationship: part_of UBERON:0000977 ! pleura +relationship: part_of UBERON:0002048 {source="FMA"} ! lung + +[Term] +id: UBERON:0002402 +name: pleural cavity +def: "The fluid-filled cavity that lies between the visceral and parietal pleurae." [http://en.wikipedia.org/wiki/Pleural_cavity, https://github.com/obophenotype/uberon/issues/86] +subset: pheno_slim +subset: uberon_slim +synonym: "cavitas pleuralis" EXACT LATIN [http://en.wikipedia.org/wiki/Pleural_cavity] +synonym: "cavitum pleuralae" RELATED LATIN [http://en.wikipedia.org/wiki/Pleural_cavity] +synonym: "cavitum pleurale" RELATED LATIN [http://en.wikipedia.org/wiki/Pleural_cavity] +xref: BTO:0004422 +xref: EHDAA2:0001475 +xref: EMAPA:16773 +xref: EMAPA:16774 +xref: FMA:9740 +xref: GAID:95 +xref: http://linkedlifedata.com/resource/umls/id/C0178802 +xref: http://www.snomedbrowser.com/Codes/Details/361999006 +xref: MA:0000055 +xref: MESH:A01.911.800.650 +xref: NCIT:C12840 +xref: OpenCyc:Mx4rwCKAppwpEbGdrcN5Y29ycA +xref: Pleural:cavity +xref: UMLS:C0178802 {source="ncithesaurus:Pleural_Cavity"} +xref: VHOG:0000581 +is_a: UBERON:0035809 ! serous cavity +intersection_of: UBERON:0002553 ! anatomical cavity +intersection_of: luminal_space_of UBERON:0009778 ! pleural sac +relationship: adjacent_to UBERON:0002400 ! parietal pleura +relationship: adjacent_to UBERON:0002401 ! visceral pleura +relationship: develops_from UBERON:0003887 {source="Wikipedia"} ! intraembryonic coelom +relationship: luminal_space_of UBERON:0009778 ! pleural sac +relationship: part_of UBERON:0009778 ! pleural sac + +[Term] +id: UBERON:0002403 +name: internal intercostal muscle +def: "An intercostal muscle that aids in forced expiration (quiet expiration is a passive process)." [http://en.wikipedia.org/wiki/Intercostal_muscle, http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "intercostal muscle internal layer" RELATED [] +synonym: "intercostales internus" EXACT [] +xref: EHDAA2:0000875 +xref: EMAPA:18523 +xref: FMA:9757 +xref: http://linkedlifedata.com/resource/umls/id/C1744536 +xref: http://www.snomedbrowser.com/Codes/Details/244890001 +xref: Intercostal:muscle +xref: MA:0002326 +xref: NCIT:C32848 +xref: OpenCyc:Mx4rvlj6HZwpEbGdrcN5Y29ycA +xref: UMLS:C1744536 {source="ncithesaurus:Internal_Intercostal_Muscle"} +xref: VHOG:0000905 +is_a: UBERON:0001111 ! intercostal muscle +relationship: develops_from UBERON:0010981 {source="EHDAA2"} ! internal intercostal pre-muscle mass + +[Term] +id: UBERON:0002404 +name: transversus thoracis +def: "The tranversus thoracis lies internal to the thoracic cage, anteriorly. It is a thin plane of muscular and tendinous fibers, situated upon the inner surface of the front wall of the chest. It is in the same layer as the subcostal muscles. It arises on either side from the lower third of the posterior surface of the body of the sternum, from the posterior surface of the xiphoid process, and from the sternal ends of the costal cartilages of the lower three or four true ribs. Its fibers diverge upward and lateralward, to be inserted by slips into the lower borders and inner surfaces of the costal cartilages of the second, third, fourth, fifth, and sixth ribs. The lowest fibers of this muscle are horizontal in their direction, and are continuous with those of the Transversus abdominis; the intermediate fibers are oblique, while the highest are almost vertical. This muscle varies in its attachments, not only in different subjects, but on opposite sides of the same subject. [WP,unvetted]." [http://en.wikipedia.org/wiki/Transversus_thoracis] +subset: organ_slim +subset: uberon_slim +xref: EMAPA:19267 +xref: FMA:9760 +xref: http://linkedlifedata.com/resource/umls/id/C1744608 +xref: http://www.snomedbrowser.com/Codes/Details/244933000 +xref: MA:0002397 +xref: NCIT:C53180 +xref: Transversus:thoracis +xref: UMLS:C1744608 {source="ncithesaurus:Transversus_Thoracis"} +is_a: UBERON:0002426 {source="FMA"} ! chest muscle +relationship: innervated_by UBERON:0003727 ! intercostal nerve + +[Term] +id: UBERON:0002405 +name: immune system +def: "Anatomical system that protects the body from foreign substances, cells, and tissues by producing the immune response and that includes especially the thymus, spleen, lymphoid tissue, lymphocytes including the B cells and T cells, and antibodies." [http://en.wikipedia.org/wiki/Immune_system] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +xref: AAO:0011003 +xref: BILA:0000104 +xref: BTO:0005810 +xref: FMA:9825 +xref: GAID:328 +xref: http://linkedlifedata.com/resource/umls/id/C0020962 +xref: http://www.snomedbrowser.com/Codes/Details/362590003 +xref: Immune:system +xref: MA:0002711 +xref: MESH:D007107 +xref: NCIT:C12735 +xref: OpenCyc:Mx4rvWNkm5wpEbGdrcN5Y29ycA +xref: TAO:0001159 +xref: UMLS:C0020962 {source="ncithesaurus:Immune_System"} +xref: VHOG:0001247 +xref: XAO:0003152 +xref: ZFA:0001159 +is_a: UBERON:0000467 ! anatomical system +disjoint_from: UBERON:0002416 ! integumental system +disjoint_from: UBERON:0002423 ! hepatobiliary system +disjoint_from: UBERON:0004456 ! entire sense organ system +relationship: existence_ends_during UBERON:0000066 ! fully formed stage +relationship: protects UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0002406 +name: pericardial sac +def: "a double-walled sac containing the heart and the roots of the great vessels." [http://en.wikipedia.org/wiki/Pericardium, https://github.com/obophenotype/uberon/issues/86] +subset: uberon_slim +subset: vertebrate_core +synonym: "pericardium" RELATED [] +xref: FMA:9868 +xref: http://www.snomedbrowser.com/Codes/Details/361326002 +xref: RETIRED_EHDAA2:0001443 +xref: TAO:0000054 +is_a: UBERON:0005181 ! thoracic segment organ +is_a: UBERON:0005906 ! serous sac +intersection_of: UBERON:0005906 ! serous sac +intersection_of: has_part UBERON:0001074 ! pericardial cavity +intersection_of: has_part UBERON:0002357 ! serous pericardium +relationship: has_part UBERON:0001074 ! pericardial cavity +relationship: has_part UBERON:0002357 ! serous pericardium +relationship: part_of UBERON:0002407 ! pericardium +relationship: surrounded_by UBERON:0002359 {source="FMA"} ! fibrous pericardium + +[Term] +id: UBERON:0002407 +name: pericardium +def: "The combination of pericardial sac (a double-walled sac containing the heart and the roots of the great vessels) plus fibrous pericardium." [http://en.wikipedia.org/wiki/Pericardium, http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +xref: AAO:0010817 +xref: BSA:0000090 +xref: BTO:0000717 +xref: CALOHA:TS-0761 +xref: EFO:0000820 +xref: EHDAA:5376 +xref: EMAPA:16133 +xref: EV:0100023 +xref: FMA:9869 +xref: GAID:569 +xref: galen:Pericardium +xref: http://en.wikipedia.org/wiki/Pericardium +xref: http://linkedlifedata.com/resource/umls/id/C0031050 +xref: http://www.snomedbrowser.com/Codes/Details/181295003 +xref: MA:0000099 +xref: MAT:0000454 +xref: MESH:D010496 +xref: NCIT:C13005 +xref: OpenCyc:Mx4rvoCLgJwpEbGdrcN5Y29ycA +xref: RETIRED_EHDAA2:0001443 +xref: TAO:0000054 +xref: UMLS:C0031050 {source="ncithesaurus:Pericardium"} +xref: VHOG:0001280 +xref: XAO:0004182 +xref: ZFA:0000054 +is_a: UBERON:0000481 ! multi-tissue structure +relationship: has_part UBERON:0002359 ! fibrous pericardium +relationship: has_part UBERON:0002406 ! pericardial sac +relationship: part_of UBERON:0015410 {source="MA"} ! heart plus pericardium +relationship: surrounds UBERON:0002349 ! myocardium + +[Term] +id: UBERON:0002408 +name: parietal serous pericardium +def: "Parietal serous membrane which is part of the pericardium and forms the outer layer of the pericardial sac." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "lamina parietalis (pericardii serosum)" EXACT [] +synonym: "lamina parietalis pericardii" EXACT LATIN [FMA:9870, FMA:TA] +synonym: "parietal layer of serous pericardium" EXACT [] +synonym: "parietal pericardium" EXACT [VHOG:0000537] +synonym: "pericardial sac" RELATED INCONSISTENT [https://doi.org/10.5962/bhl.title.1013] +xref: EHDAA:3422 +xref: EHDAA:5378 +xref: EMAPA:19031 +xref: FMA:9870 +xref: http://linkedlifedata.com/resource/umls/id/C0225969 +xref: http://www.snomedbrowser.com/Codes/Details/243956000 +xref: MA:0000483 +xref: NCIT:C94500 +xref: Parietal:pericardium +xref: UMLS:C0225969 {source="ncithesaurus:Parietal_Pericardium"} +xref: VHOG:0000537 +is_a: UBERON:0022351 ! parietal serous membrane +intersection_of: UBERON:0022351 ! parietal serous membrane +intersection_of: part_of UBERON:0002357 ! serous pericardium +relationship: part_of UBERON:0002357 ! serous pericardium + +[Term] +id: UBERON:0002409 +name: pericardial fluid +def: "Transudate contained in the pericardial cavity.[FMA]" [FMA:9887, http://en.wikipedia.org/wiki/Pericardial_fluid] +subset: uberon_slim +xref: BTO:0001016 +xref: FMA:9887 +xref: MA:0002530 +xref: Pericardial:fluid +is_a: UBERON:0007794 {source="FMA"} ! secretion of serous gland +is_a: UBERON:0036217 ! coelomic fluid +intersection_of: UBERON:0000463 ! organism substance +intersection_of: produced_by UBERON:0002425 ! visceral serous pericardium +relationship: located_in UBERON:0001074 ! pericardial cavity +relationship: produced_by UBERON:0002425 ! visceral serous pericardium + +[Term] +id: UBERON:0002410 +name: autonomic nervous system +def: "The autonomic nervous system is composed of neurons that are not under conscious control, and is comprised of two antagonistic components, the sympathetic and parasympathetic nervous systems. The autonomic nervous system regulates key functions including the activity of the cardiac (heart) muscle, smooth muscles (e.g. of the gut), and glands[GO]." [GO:0048483] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "ANS" RELATED ABBREVIATION [] +synonym: "autonomic division of peripheral nervous system" EXACT [FMA:65553] +synonym: "autonomic part of peripheral nervous system" EXACT [FMA:65553] +synonym: "divisio autonomica systematis nervosi peripherici" EXACT [FMA:TA] +synonym: "divisio autonomica systematis nervosi peripherici" RELATED LATIN [http://en.wikipedia.org/wiki/Autonomic_nervous_system] +synonym: "pars autonomica systematis nervosi peripherici" EXACT [FMA:TA] +synonym: "peripheral autonomic nervous system" EXACT [FMA:65553] +synonym: "visceral nervous system" EXACT [] +xref: AAO:0000033 +xref: BIRNLEX:1123 +xref: BTO:0002507 +xref: CALOHA:TS-2001 +xref: EHDA:10095 +xref: EHDAA2:0000158 +xref: EHDAA:3767 +xref: EMAPA:16984 +xref: FMA:65553 +xref: GAID:706 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2054 +xref: http://en.wikipedia.org/wiki/Autonomic_nervous_system +xref: http://linkedlifedata.com/resource/umls/id/C0004388 +xref: http://linkedlifedata.com/resource/umls/id/C1305381 +xref: http://www.snomedbrowser.com/Codes/Details/362481007 +xref: MA:0000219 +xref: MESH:D001341 +xref: NCIT:C12673 +xref: TAO:0001574 +xref: UMLS:C0004388 {source="ncithesaurus:Autonomic_Nervous_System"} +xref: UMLS:C0004388 {source="BIRNLEX:1123"} +xref: UMLS:C1305381 {source="BIRNLEX:1123"} +xref: VHOG:0000396 +xref: ZFA:0001574 +is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision +relationship: contributes_to_morphology_of UBERON:0001016 ! nervous system +relationship: part_of UBERON:0000010 {source="EMAPA", source="MA", source="NIFSTD", source="ZFA-modified-from-isa"} ! peripheral nervous system + +[Term] +id: UBERON:0002411 +name: clitoris +def: "the small, erectile body located at the anterior end of the vulva" [ISBN:0-683-40008-8, MP:0003127] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +xref: BTO:0002020 +xref: EHDAA2:0000255 +xref: EHDAA:9360 +xref: EMAPA:30819 +xref: FMA:9909 +xref: GAID:385 +xref: galen:Clitoris +xref: http://en.wikipedia.org/wiki/Clitoris +xref: http://linkedlifedata.com/resource/umls/id/C0008984 +xref: http://www.snomedbrowser.com/Codes/Details/181442003 +xref: MA:0000382 +xref: MESH:D002987 +xref: NCIT:C12308 +xref: OpenCyc:Mx4rvVjr6ZwpEbGdrcN5Y29ycA +xref: UMLS:C0008984 {source="ncithesaurus:Clitoris"} +xref: VHOG:0000700 +is_a: UBERON:0000062 {source="Wikipedia"} ! organ +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: contributes_to_morphology_of UBERON:0005056 ! external female genitalia +relationship: develops_from UBERON:0005876 {source="EHDAA2", source="Wikipedia"} ! undifferentiated genital tubercle +relationship: part_of UBERON:0000997 {source="MA"} ! mammalian vulva + +[Term] +id: UBERON:0002412 +name: vertebra +def: "The ossified form of a vertebral element, a skeletal element that forms around the notochord and is part of the vertebral column." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, http://orcid.org/0000-0002-6601-2165, VSAO:0000184] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "vertebra bone" EXACT [] +synonym: "vertebrae" EXACT PLURAL [PHENOSCAPE:ad] +xref: AAO:0000691 +xref: CALOHA:TS-2352 +xref: EFO:0001371 +xref: EMAPA:32740 +xref: FMA:9914 +xref: galen:Vertebra +xref: http://en.wikipedia.org/wiki/Vertebra +xref: http://linkedlifedata.com/resource/umls/id/C0549207 +xref: http://www.snomedbrowser.com/Codes/Details/181817002 +xref: MA:0000309 +xref: NCIT:C12933 +xref: OpenCyc:Mx4rvt2Dh5wpEbGdrcN5Y29ycA +xref: TAO:0001189 +xref: UMLS:C0549207 {source="ncithesaurus:Vertebra"} +xref: XAO:0004019 +xref: ZFA:0001189 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0008001 {source="FMA"} ! irregular bone +is_a: UBERON:0010913 ! vertebral element +intersection_of: UBERON:0010913 ! vertebral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0011094 ! vertebra cartilage element + +[Term] +id: UBERON:0002413 +name: cervical vertebra +def: "A vertebra that is located in the cervical region of the vertebral column." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "cervical vertebrae" EXACT PLURAL [] +synonym: "vertebrae cervicales" RELATED LATIN [http://en.wikipedia.org/wiki/Cervical_vertebrae] +xref: Cervical:vertebrae +xref: EMAPA:17674 +xref: FMA:9915 +xref: GAID:235 +xref: galen:CervicalVertebra +xref: http://www.snomedbrowser.com/Codes/Details/181820005 +xref: MA:0000311 +xref: MESH:D002574 +xref: NCIT:C12693 +xref: XAO:0003076 +is_a: UBERON:0003458 ! neck bone +is_a: UBERON:0004247 ! bone of dorsum +is_a: UBERON:0004451 {is_inferred="true"} ! trunk or cervical vertebra +is_a: UBERON:0015007 ! cervical vertebra endochondral element +intersection_of: UBERON:0015007 ! cervical vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0013505 ! cervical vertebra cartilage element + +[Term] +id: UBERON:0002414 +name: lumbar vertebra +def: "Large vertebra of the movable part of the vertebral column, characterized by the absence of the foramen transversarium within the transverse process, and by the absence of facets on the sides of the body." [http://en.wikipedia.org/wiki/Lumbar_vertebrae] +subset: pheno_slim +subset: uberon_slim +xref: CALOHA:TS-2364 +xref: EMAPA:18007 +xref: FMA:9921 +xref: GAID:240 +xref: galen:LumbarVertebra +xref: http://linkedlifedata.com/resource/umls/id/C0024091 +xref: http://www.snomedbrowser.com/Codes/Details/181822002 +xref: Lumbar:vertebrae +xref: MA:0000312 +xref: MESH:D008159 +xref: NCIT:C12744 +xref: OpenCyc:Mx4rvaOek5wpEbGdrcN5Y29ycA +xref: UMLS:C0024091 {source="ncithesaurus:Lumbar_Vertebra"} +is_a: UBERON:0002412 ! vertebra +is_a: UBERON:0003828 ! abdominal segment bone +is_a: UBERON:0004247 ! bone of dorsum +is_a: UBERON:0015009 ! lumbar vertebra endochondral element +intersection_of: UBERON:0015009 ! lumbar vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0013509 ! lumbar vertebra cartilage element + +[Term] +id: UBERON:0002415 +name: tail +def: "An external caudal extension of the body. In chordates, the tail is post-anal, in other animals the anus ends in the tail" [AEO:0000109, http://en.wikipedia.org/wiki/Tail] +subset: efo_slim +subset: grouping_class +subset: pheno_slim +subset: uberon_slim +synonym: "caudal subdivision" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: AEO:0000109 +xref: BILA:0000117 +xref: BTO:0001348 +xref: EFO:0000963 +xref: EHDAA:9198 +xref: GAID:1245 +xref: http://en.wikipedia.org/wiki/Tail +xref: MAT:0000094 +xref: MESH:D013623 +xref: MIAA:0000094 +xref: OpenCyc:Mx4rvVjiC5wpEbGdrcN5Y29ycA +xref: WBbt:0005741 +is_a: UBERON:0011676 ! subdivision of organism along main body axis +relationship: part_of UBERON:0000154 ! posterior region of body + +[Term] +id: UBERON:0002416 +name: integumental system +alt_id: UBERON:0007029 +def: "Connected anatomical system that forms a barrier between an animal and its environment. In vertebrates, the integumental system consists of the epidermis, dermis plus associated glands and adnexa such as hair and scales. In invertebrates, the integumental system may include cuticle." [CARO:0002001, http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/29] +subset: efo_slim +subset: grouping_class +subset: pheno_slim +synonym: "body surface" RELATED [] +synonym: "dermal system" RELATED [MIAA:0000033] +synonym: "external covering of organism" RELATED [] +synonym: "integumentary system" EXACT [FMA:72979] +synonym: "integumentum commune" RELATED LATIN [http://en.wikipedia.org/wiki/Integumentary_system] +synonym: "organism surface" RELATED [EHDAA2:0003154] +synonym: "surface" RELATED [BILA:0000118] +xref: AEO:0000154 +xref: BILA:0000118 +xref: CALOHA:TS-1299 +xref: CARO:0002001 +xref: EFO:0000807 +xref: EHDAA2:0000836 +xref: EHDAA2_RETIRED:0003154 +xref: EHDAA:6520 +xref: EMAPA:17524 +xref: EV:0100151 +xref: FBbt:00004969 +xref: FMA:72979 +xref: galen:Surface +xref: HAO:0000421 +xref: http://linkedlifedata.com/resource/umls/id/C0037267 +xref: http://www.snomedbrowser.com/Codes/Details/361692004 +xref: Integumentary:system +xref: MA:0000014 +xref: MAT:0000033 +xref: MESH:D034582 +xref: MIAA:0000033 +xref: NCIT:C12907 +xref: TADS:0000108 +xref: UMLS:C0037267 {source="ncithesaurus:Integumentary_System"} +xref: VHOG:0000403 +xref: XAO:0000176 +is_a: UBERON:0000467 ! anatomical system +disjoint_from: UBERON:0002423 ! hepatobiliary system +disjoint_from: UBERON:0004456 ! entire sense organ system +relationship: bounding_layer_of UBERON:0000468 ! multicellular organism +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tfhayamizu +relationship: existence_ends_during UBERON:0000066 ! fully formed stage +relationship: has_part UBERON:0007376 ! outer epithelium +relationship: surrounded_by UBERON:0013514 ! space surrounding organism + +[Term] +id: UBERON:0002417 +name: abdominal segment of trunk +def: "The abdominal segment of the torso." [http://en.wikipedia.org/wiki/Lumbar] +synonym: "abdomen/pelvis/perineum" RELATED [MA:0000021] +synonym: "lower body" RELATED [MA:0000021] +synonym: "lower trunk" RELATED [FMA:259211] +synonym: "lumbar region" RELATED [https://orcid.org/0000-0002-6601-2165] +xref: EMAPA:35104 +xref: FMA:259211 +xref: http://en.wikipedia.org/wiki/Lumbar +xref: http://www.snomedbrowser.com/Codes/Details/362875007 +xref: MA:0000021 +is_a: UBERON:0009569 {source="FMA"} ! subdivision of trunk +is_a: UBERON:0011676 ! subdivision of organism along main body axis + +[Term] +id: UBERON:0002418 +name: cartilage tissue +def: "Skeletal tissue that is avascular, rich in glycosaminoglycans (GAGs) and typically includes chondrocytes within isolated lacunae. Cartilage tissue is deposited by chondroblasts." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, https://github.com/obophenotype/uberon/issues/37, https://sourceforge.net/p/obo/vertebrate-skeletal-anatomy-vsao-term-requests/5, PSPUB:0000170, VSAO:0000040] +comment: Previous: "A portion of connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate[GO]. Regular connective tissue, which consists of chondrocytes and related cells, the intercellular matrix of which is chondrified. Examples: hyaline cartilage, fibrocartilage, elastic cartilage[FMA]. an avascular supporting and articular skeletal tissue. It also functions as the primary endoskeletal support in vertebrate embryos. Cartilage is deposited by and is composed of chondroblasts and chondrocytes separated by an extracellular matrix, which may or may not mineralize depending on cartilage type, age, or taxon[Hall and Witten]." See also FMA:71500 Set of cartilages, FMA:55107 Cartilage organ, FMA:12264 Articular cartilage. // elements made from cartilage, cartilage-like, or chondroid tissues evolved in invertebrates[H&W] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "cartilage" RELATED [] +synonym: "cartilage tissue" EXACT [FMA:37377] +synonym: "cartilages" RELATED [VHOG:0001207] +synonym: "cartilaginous tissue" EXACT [] +synonym: "chondrogenic tissue" EXACT [VSAO:0000040] +synonym: "portion of cartilage tissue" RELATED [FMA:37377] +xref: AAO:0000060 +xref: AEO:0000087 +xref: BTO:0000206 +xref: EFO:0000949 +xref: EHDAA2:0003087 +xref: EMAPA:32730 +xref: EV:0100141 +xref: FMA:37377 +xref: GAID:99 +xref: galen:Cartilage +xref: http://en.wikipedia.org/wiki/Cartilage +xref: http://linkedlifedata.com/resource/umls/id/C0007301 +xref: http://www.snomedbrowser.com/Codes/Details/309312004 +xref: MA:0000104 +xref: MAT:0000189 +xref: MESH:D002356 +xref: MIAA:0000189 +xref: NCIT:C12373 +xref: NCIT:C32268 +xref: OpenCyc:Mx4rvVjeOZwpEbGdrcN5Y29ycA +xref: TAO:0001501 +xref: UMLS:C0007301 {source="ncithesaurus:Cartilage"} +xref: VHOG:0001207 +xref: VSAO:0000040 +xref: XAO:0000170 +xref: ZFA:0005622 +is_a: UBERON:0004755 ! skeletal tissue +disjoint_from: UBERON:0002481 {source="https://github.com/obophenotype/uberon/issues/117"} ! bone tissue +relationship: contributes_to_morphology_of UBERON:0001434 ! skeletal system +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly + +[Term] +id: UBERON:0002419 +name: skin gland +def: "A gland that is part of a skin of body [Automatically generated definition]." [OBOL:automatic] +subset: organ_slim +synonym: "glandulae cutis" EXACT LATIN [FMA:71878, FMA:TA] +synonym: "set of skin glands" RELATED [FMA:71878] +synonym: "skin glands" RELATED PLURAL [] +synonym: "skin glands set" RELATED PLURAL [] +xref: EMAPA:35774 +xref: FMA:71878 +xref: http://www.snomedbrowser.com/Codes/Details/110485007 +xref: MA:0000146 +is_a: UBERON:0003297 ! gland of integumental system +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0006003 ! integumentary adnexa +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0002097 ! skin of body +relationship: part_of UBERON:0002097 ! skin of body + +[Term] +id: UBERON:0002420 +name: basal ganglion +def: "An individual member of a collection of basal ganglia. Basal ganglia are subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum[NIF,modified]." [BIRNLEX:826] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "basal ganglia" RELATED PLURAL [] +synonym: "basal ganglion of telencephalon" EXACT [] +synonym: "basal nucleus" RELATED [MA:0000184] +synonym: "nuclei basales" RELATED LATIN [http://en.wikipedia.org/wiki/Basal_ganglia] +xref: BTO:0000235 +xref: CALOHA:TS-1149 +xref: DHBA:10332 +xref: EFO:0000904 +xref: FMA:62514 +xref: http://www.snomedbrowser.com/Codes/Details/244434001 +is_a: UBERON:0003528 ! brain gray matter +is_a: UBERON:0007245 {source="FMA"} ! nuclear complex of neuraxis +relationship: part_of UBERON:0010011 ! collection of basal ganglia + +[Term] +id: UBERON:0002421 +name: hippocampal formation +def: "Hippocampus (proper) plus dentate gyrus and subiculum[definition derived from NIF comments and ontology alignment]." [https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "archipallium" RELATED [MA:0000189] +synonym: "formatio hippocampi" RELATED LATIN [NeuroNames:177] +synonym: "hippocampus" NARROW INCONSISTENT [BTO:0000601, GO:0021766] +synonym: "hippocampus (Crosby)" EXACT [] +synonym: "major hippocampus" RELATED [BTO:0000601] +synonym: "primal cortex" RELATED [MA:0000189] +synonym: "seahorse" RELATED [NeuroNames:177] +xref: BAMS:Hi +xref: BAMS:HiF +xref: BAMS:HPF +xref: BIRNLEX:715 +xref: BM:Tel-HF +xref: BTO:0000601 +xref: DHBA:10294 +xref: EMAPA:35405 +xref: FMA:74038 +xref: HBA:4249 +xref: Hippocampal:formation +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=177 {source="BIRNLEX:715"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=177 +xref: http://linkedlifedata.com/resource/umls/id/C0175202 +xref: http://www.snomedbrowser.com/Codes/Details/422867004 +xref: MA:0000189 +xref: MBA:1089 +xref: PBA:4003 +xref: UMLS:C0175202 {source="BIRNLEX:715"} +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000956 {source="MBA-indirect", source="NIFSTD"} ! cerebral cortex + +[Term] +id: UBERON:0002422 +name: fourth ventricle +def: "Part of the ventricular system of the brain, forming a single large irregularly shaped cavity located on the midline of the rhombencephalon, between the medulla, pons and the isthmus ventrally and the cerebellum dorsally. It is continuous with the cerebral aqueduct anteriorally and the central canal of the spinal cord posteriorly. It communicates with the subarachnoid space through its lateral and median apertures." [BIRNLEX:1256] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "4th ventricle" RELATED [MA:0000196] +synonym: "fourth ventricle proper" RELATED [BAMS:V4] +synonym: "hindbrain ventricle" RELATED NON_MAMMAL [VHOG:0000006] +synonym: "IVth ventricle" RELATED [VHOG:0000006] +synonym: "rhombencephalic ventricle" RELATED [VHOG:0000006] +synonym: "rhombencephalic vesicle" NARROW [ZFA:0000110] +synonym: "ventricle IV" EXACT [ZFA:0000110] +synonym: "ventricle of hindbrain" RELATED NON_MAMMAL [BTO:0003426] +synonym: "ventricle of rhombencephalon" RELATED [BTO:0003426] +synonym: "ventriculus quartus" RELATED LATIN [http://en.wikipedia.org/wiki/Fourth_ventricle] +xref: AAO:0011043 +xref: BAMS:4V +xref: BAMS:V4 +xref: BIRNLEX:1256 +xref: BM:Pons-4V +xref: BTO:0003426 +xref: CALOHA:TS-2015 +xref: DHBA:10669 +xref: DHBA:12805 +xref: DMBA:126651782 +xref: EHDAA2:0000100 +xref: EHDAA:896 +xref: EMAPA:16917 +xref: EV:0100310 +xref: FMA:78469 +xref: Fourth:ventricle +xref: GAID:610 +xref: HBA:9421 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=621 +xref: http://linkedlifedata.com/resource/umls/id/C0149556 +xref: http://www.snomedbrowser.com/Codes/Details/180932000 +xref: MA:0000196 +xref: MBA:145 +xref: MESH:D020546 +xref: NCIT:C12828 +xref: OpenCyc:Mx4rv-7Q6pwpEbGdrcN5Y29ycA +xref: TAO:0000110 +xref: UMLS:C0149556 {source="ncithesaurus:Fourth_Ventricle_of_the_Brain"} +xref: VHOG:0000006 +xref: XAO:0003099 +xref: ZFA:0000110 +is_a: UBERON:0004086 ! brain ventricle +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0004086 ! brain ventricle +intersection_of: part_of UBERON:0002028 ! hindbrain +relationship: contributes_to_morphology_of UBERON:0002028 ! hindbrain +relationship: develops_from UBERON:0013149 {source="EHDAA2"} ! hindbrain vesicle +relationship: part_of UBERON:0002028 ! hindbrain + +[Term] +id: UBERON:0002423 +name: hepatobiliary system +def: "The part of the digestive system that contains the liver and the biliary system" [http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "hepaticobiliary system" EXACT [GO:0061008] +synonym: "liver and biliary system" EXACT [] +synonym: "liver/biliary system" RELATED [] +xref: AAO:0011056 +xref: CALOHA:TS-1308 +xref: EFO:0000800 +xref: EHDAA2:0000998 +xref: EHDAA:2189 +xref: EMAPA:16840 +xref: EV:0100088 +xref: Hepatobiliary:system +xref: http://linkedlifedata.com/resource/umls/id/C1711359 +xref: MA:0000324 +xref: MAT:0000024 +xref: MIAA:0000024 +xref: NCIT:C43612 +xref: TAO:0000036 +xref: UMLS:C1711359 {source="ncithesaurus:Hepatobiliary_System"} +xref: VHOG:0000294 +xref: XAO:0000132 +xref: ZFA:0000036 +is_a: UBERON:0011216 ! organ system subdivision +disjoint_from: UBERON:0004456 ! entire sense organ system +relationship: existence_ends_during UBERON:0000066 ! fully formed stage +relationship: has_part UBERON:0002107 ! liver +relationship: has_part UBERON:0002294 ! biliary system +relationship: part_of UBERON:0001007 ! digestive system + +[Term] +id: UBERON:0002424 +name: oral epithelium +def: "An epithelium that is part of the mouth and lines the oral cavity, typically stratified squamous, and may be para-, ortho- or non- keratinized. Primary barrier between oral environment and deeper tissues" [https://orcid.org/0000-0002-6601-2165] +subset: vertebrate_core +synonym: "epithelium of mucosa of mouth" EXACT [FMA:265152] +synonym: "epithelium of oral mucosa" EXACT [FMA:265152] +xref: AAO:0010357 +xref: BTO:0001775 +xref: CALOHA:TS-0715 +xref: EHDAA2:0001325 +xref: EHDAA:2187 +xref: EMAPA:16839 +xref: EMAPA:26942 +xref: FMA:265152 +xref: http://linkedlifedata.com/resource/umls/id/C1709332 +xref: MA:0000344 +xref: NCIT:C49595 +xref: TAO:0000816 +xref: UMLS:C1709332 {source="ncithesaurus:Oral_Cavity_Epithelium"} +xref: VHOG:0000187 +xref: XAO:0003201 +xref: ZFA:0000816 +is_a: UBERON:0003350 ! epithelium of mucosa +is_a: UBERON:0003929 ! digestive tract epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0003729 ! mouth mucosa +relationship: adjacent_to UBERON:0000167 {source="AAO-modified"} ! oral cavity +relationship: part_of UBERON:0003729 ! mouth mucosa + +[Term] +id: UBERON:0002425 +name: visceral serous pericardium +def: "Visceral serous membrane which is continuous with the parietal serous pericardium and is attached to the myocardium[FMA]." [http://en.wikipedia.org/wiki/Visceral_pericardium] +subset: pheno_slim +subset: uberon_slim +synonym: "epicardium" RELATED [MA:0000484] +synonym: "lamina visceralis pericardii serosi" EXACT LATIN [http://en.wikipedia.org/wiki/Epicardium] +synonym: "pericardium visceral mesothelium" RELATED [EMAPA:16589] +synonym: "serous visceral pericardium" EXACT [] +synonym: "visceral lamina of serous pericardium" EXACT [] +synonym: "visceral layer of serous pericardium" EXACT [] +synonym: "visceral pericardium" EXACT [VHOG:0000538] +xref: EMAPA:16589 +xref: EMAPA:19032 +xref: FMA:84882 +xref: http://www.snomedbrowser.com/Codes/Details/243955001 +xref: MA:0000484 +xref: VHOG:0000538 +xref: Visceral:pericardium +is_a: UBERON:0022350 ! visceral serous membrane +intersection_of: UBERON:0022350 ! visceral serous membrane +intersection_of: part_of UBERON:0002357 ! serous pericardium +relationship: attaches_to UBERON:0002349 {source="FMA"} ! myocardium +relationship: contributes_to_morphology_of UBERON:0002407 ! pericardium +relationship: has_part UBERON:0002348 {source="cjm"} ! epicardium +relationship: part_of UBERON:0002357 ! serous pericardium + +[Term] +id: UBERON:0002426 +name: chest muscle +def: "Any muscle organ that is part of a chest [Automatically generated definition]." [OBOL:automatic] +synonym: "anterior thoracic region muscle organ" EXACT [OBOL:automatic] +synonym: "anterolateral part of thorax muscle organ" EXACT [OBOL:automatic] +synonym: "chest muscle organ" EXACT [OBOL:automatic] +synonym: "front of thorax muscle organ" EXACT [OBOL:automatic] +synonym: "muscle of thorax" EXACT [FMA:9619] +synonym: "muscle organ of anterior thoracic region" EXACT [OBOL:automatic] +synonym: "muscle organ of anterolateral part of thorax" EXACT [OBOL:automatic] +synonym: "muscle organ of chest" EXACT [OBOL:automatic] +synonym: "muscle organ of front of thorax" EXACT [OBOL:automatic] +synonym: "musculus thoracicus" EXACT [] +synonym: "thoracic muscle" EXACT [] +xref: BTO:0000508 +xref: CALOHA:TS-1037 +xref: EMAPA:17747 +xref: EMAPA:17748 +xref: FMA:9619 +xref: MA:0000548 +is_a: UBERON:0003830 ! thoracic segment muscle +is_a: UBERON:0005175 ! chest organ +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0001443 ! chest + +[Term] +id: UBERON:0002427 +name: arm skin +def: "A zone of skin that is part of an arm [Automatically generated definition]." [OBOL:automatic] +synonym: "brachial region skin" RELATED [OBOL:automatic] +synonym: "skin of arm" EXACT [OBOL:automatic] +xref: EMAPA:37350 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C0222204 +xref: MA:0000596 +xref: NCIT:C52754 +xref: UMLS:C0222204 {source="ncithesaurus:Arm_Skin"} +is_a: UBERON:0003531 ! forelimb skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0001460 ! arm +relationship: part_of UBERON:0001460 ! arm + +[Term] +id: UBERON:0002428 +name: limb bone +def: "A bone that is part of a limb [Automatically generated definition]." [OBOL:automatic] +subset: efo_slim +subset: pheno_slim +synonym: "bone of extremity" EXACT [] +synonym: "bone of limb" EXACT [OBOL:automatic] +synonym: "free limb bone" EXACT [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +xref: EFO:0000945 +xref: http://linkedlifedata.com/resource/umls/id/C0582791 +xref: http://www.snomedbrowser.com/Codes/Details/304149004 +xref: MAT:0000151 +xref: MIAA:0000151 +xref: NCIT:C32223 +xref: UMLS:C0582791 {source="ncithesaurus:Bone_of_the_Extremity"} +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004375 ! bone of free limb or fin +is_a: UBERON:0015061 ! limb endochondral element +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0002101 ! limb +relationship: develops_from UBERON:0010881 ! limb cartilage element + +[Term] +id: UBERON:0002429 +name: cervical lymph node +def: "Cervical lymph nodes are lymph nodes found in the neck. [WP,unvetted]." [http://en.wikipedia.org/wiki/Cervical_lymph_node] +subset: pheno_slim +subset: uberon_slim +synonym: "lymph node of neck" EXACT [] +xref: FMA:61213 +xref: http://en.wikipedia.org/wiki/Cervical_lymph_nodes +xref: http://linkedlifedata.com/resource/umls/id/C0588054 +xref: http://www.snomedbrowser.com/Codes/Details/181757009 +xref: MA:0000736 +xref: NCIT:C32298 +xref: UMLS:C0588054 {source="ncithesaurus:Cervical_Lymph_Node"} +is_a: UBERON:0000029 ! lymph node +intersection_of: UBERON:0000029 ! lymph node +intersection_of: part_of UBERON:0000974 ! neck +relationship: part_of UBERON:0000974 ! neck + +[Term] +id: UBERON:0002430 +name: lateral hypothalamic area +def: "The lateral hypothalamus or lateral hypothalamic area is a part of the hypothalamus. It is concerned with hunger. Damage to this area can cause reduced food intake. Stimulating the lateral hypothalamus causes a desire to eat, while stimulating the ventromedial hypothalamus causes a desire to stop eating. [WP,unvetted]." [http://en.wikipedia.org/wiki/Lateral_hypothalamic_area] +subset: uberon_slim +synonym: "area hypothalamica lateralis" EXACT LATIN [FMA:62030, FMA:TA] +synonym: "area lateralis hypothalami" RELATED LATIN [NeuroNames:426] +synonym: "lateral division of hypothalamus" EXACT [] +synonym: "lateral group of hypothalamic nuclei" EXACT [] +synonym: "lateral hypothalamic area (Nissl 1913)" RELATED [NeuroNames:426] +synonym: "lateral hypothalamic area proper" RELATED [BAMS:LHA] +synonym: "lateral hypothalamic group" EXACT [] +synonym: "lateral hypothalamic nucleus" RELATED [MA:0000834] +synonym: "lateral hypothalamic region" EXACT [FMA:62030] +synonym: "lateral hypothalamic zone (Crosby)" EXACT [] +synonym: "LH" BROAD ABBREVIATION [BIRNLEX:4037, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:HLA +xref: BAMS:LH +xref: BAMS:LHA +xref: BIRNLEX:4037 +xref: BM:Die-Hy-HLA +xref: EMAPA:35480 +xref: FMA:62030 +xref: GAID:640 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=426 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=426 {source="BIRNLEX:4037"} +xref: http://en.wikipedia.org/wiki/Lateral_hypothalamic_area +xref: http://linkedlifedata.com/resource/umls/id/C0020654 +xref: MA:0000834 +xref: MBA:194 +xref: MESH:A08.186.211.730.385.357.300 +xref: UMLS:C0020654 {source="BIRNLEX:4037"} +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus +relationship: present_in_taxon NCBITaxon:117569 {source="Ariens, p. 1192"} + +[Term] +id: UBERON:0002431 +name: obsolete pars anterior +is_obsolete: true +consider: UBERON:0006964 + +[Term] +id: UBERON:0002432 +name: pars intermedia of adenohypophysis +def: "the thin boundary between the adenohypophysis and neurohypophysis of the pituitary that produces melanocyte stimulating hormone (MSH); this area is small or absent in mammalian adults" [MGI:csmith, MP:0008130] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "intermediate lobe" RELATED [BTO:0001788] +synonym: "intermediate lobe of adenohypophysis" EXACT [] +synonym: "intermediate lobe of pituitary" EXACT [] +synonym: "pars intermedia" EXACT [MA:0000855] +synonym: "pars intermedia (glandula pituitaria)" EXACT LATIN [FMA:74632, FMA:TA] +synonym: "pars intermedia adenohypophyseos" RELATED [BTO:0001788] +synonym: "pars intermedia adenohypophyseos" RELATED LATIN [http://en.wikipedia.org/wiki/Pars_intermedia] +synonym: "pars intermedia adenohypophysis" EXACT LATIN [FMA:74632, FMA:TA] +synonym: "pars intermedia lobi anterior hypophyseos" RELATED [BTO:0001788] +synonym: "pars intermedia of anterior lobe of pituitary gland" EXACT [FMA:74632] +xref: BAMS:IPit +xref: BTO:0001788 +xref: CALOHA:TS-0795 +xref: EHDAA2:0001417 +xref: EHDAA:8765 +xref: EMAPA:17516 +xref: FMA:74632 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=409 +xref: http://www.snomedbrowser.com/Codes/Details/245534008 +xref: MA:0000855 +xref: Pars:intermedia +xref: TAO:0001197 +xref: VHOG:0001178 +xref: ZFA:0001197 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: adjacent_to UBERON:0002198 ! neurohypophysis +relationship: adjacent_to UBERON:0006377 ! remnant of Rathke's pouch +relationship: contributes_to_morphology_of UBERON:0000007 ! pituitary gland +relationship: part_of UBERON:0002196 {source="FMA", source="ZFA"} ! adenohypophysis +relationship: present_in_taxon NCBITaxon:117569 {source="Ariens, p. 1192"} + +[Term] +id: UBERON:0002433 +name: pars tuberalis of adenohypophysis +def: "The pars tuberalis is part of the anterior lobe of the pituitary gland, and wraps the pituitary stalk in a highly vascularized sheath. [WP,unvetted]." [http://en.wikipedia.org/wiki/Pars_tuberalis] +subset: uberon_slim +subset: vertebrate_core +synonym: "pars infundibularis of adenohypophysis" EXACT [FMA:74631] +synonym: "pars tuberalis" EXACT [MA:0000856] +synonym: "pars tuberalis (glandula pituitaria)" EXACT LATIN [FMA:74631, FMA:TA] +synonym: "pars tuberalis adenohypophyseos" RELATED LATIN [http://en.wikipedia.org/wiki/Pars_tuberalis] +synonym: "pars tuberalis adenohypophysis" EXACT LATIN [FMA:74631, FMA:TA] +synonym: "pars tuberalis of anterior lobe of pituitary gland" EXACT [FMA:74631] +xref: BTO:0001739 +xref: EHDAA2:0001419 +xref: EHDAA:8767 +xref: EMAPA:17517 +xref: FMA:74631 +xref: MA:0000856 +xref: Pars:tuberalis +xref: TAO:0001196 +xref: VHOG:0001114 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0002196 ! adenohypophysis + +[Term] +id: UBERON:0002434 +name: pituitary stalk +alt_id: UBERON:0003014 +alt_id: UBERON:0014606 +def: "the apical portion of the tubular structure extending from the hypothalamus to the posterior lobe of the pituitary gland" [ISBN:0-683-40008-8, MP:0009463] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "hypophyseal infundibulum" RELATED [BIRNLEX:1248] +synonym: "hypophyseal stalk" EXACT [MP:0009463] +synonym: "hypophysial stalk" RELATED [ZFA:0001199] +synonym: "InfS" BROAD ABBREVIATION [BIRNLEX:1248, NIFSTD:NeuroNames_abbrevSource] +synonym: "infundibular stalk" EXACT [BIRNLEX:1248] +synonym: "infundibular stem" BROAD [MP:0009463] +synonym: "infundibular stem" EXACT HUMAN_PREFERRED [BIRNLEX:1248] +synonym: "infundibular stem of neurohypophysis" EXACT [FMA:74635] +synonym: "infundibular stem of neurohypophysis" EXACT [BIRNLEX:1248] +synonym: "infundibulum" EXACT [MA:0000858, ZFA:0001199] +synonym: "infundibulum" EXACT [ZFA:0001199] +synonym: "infundibulum (lobus posterior) (glandula pituitaria)" EXACT LATIN [FMA:74635, FMA:TA] +synonym: "infundibulum hypophysis" EXACT LATIN [FMA:74635, FMA:TA] +synonym: "infundibulum neurohypophyseos" RELATED LATIN [http://en.wikipedia.org/wiki/Pituitary_stalk] +synonym: "infundibulum of hypothalamus" RELATED [ZFA:0001199] +synonym: "infundibulum of neurohypophysis" EXACT [FMA:74635] +synonym: "infundibulum of pituitary gland" EXACT [FMA:74635] +synonym: "infundibulum of posterior lobe of pituitary gland" EXACT [FMA:74635] +synonym: "infundibulum of posterior lobe of pituitary gland" RELATED [BIRNLEX:1248] +synonym: "neurohypophysis infundibulum" EXACT [FMA:74635] +synonym: "pars tuberalis (hypophysis)" RELATED LATIN [NeuroNames:408] +synonym: "pituitary infundibular stalk" EXACT [] +synonym: "THP" BROAD ABBREVIATION [BIRNLEX:912, NIFSTD:NeuroNames_abbrevSource] +synonym: "tuberal part of hypophysis" EXACT [FMA:74635] +synonym: "tuberal part of the hypophysis" RELATED [NeuroNames:408] +xref: BAMS:INF +xref: BAMS:InfS +xref: BAMS:THP +xref: BIRNLEX:1248 +xref: BIRNLEX:912 +xref: BTO:0000768 +xref: DHBA:10643 +xref: DMBA:15690 +xref: EHDAA2:0000828 +xref: EHDAA:7538 +xref: EMAPA:17520 +xref: FMA:74635 +xref: HBA:9358 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=405 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=405 {source="BIRNLEX:1248"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=408 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=408 {source="BIRNLEX:912"} +xref: http://linkedlifedata.com/resource/umls/id/C0175325 +xref: http://linkedlifedata.com/resource/umls/id/C0447641 +xref: http://linkedlifedata.com/resource/umls/id/C0751440 +xref: http://www.snomedbrowser.com/Codes/Details/245529009 +xref: http://www.snomedbrowser.com/Codes/Details/425300001 +xref: MA:0000858 +xref: NCIT:C32228 +xref: NCIT:C45912 +xref: Pituitary:stalk +xref: TAO:0001199 +xref: UMLS:C0175325 {source="BIRNLEX:1248"} +xref: UMLS:C0447641 {source="BIRNLEX:1248"} +xref: UMLS:C0447641 {source="BIRNLEX:912"} +xref: UMLS:C0751440 {source="ncithesaurus:Pituitary_Stalk"} +xref: VHOG:0000245 +xref: XAO:0004210 +xref: ZFA:0001199 +is_a: UBERON:0002616 ! regional part of brain +disjoint_from: UBERON:0005968 ! infundibulum of hair follicle +relationship: connects UBERON:0001898 ! hypothalamus +relationship: connects UBERON:0002198 ! neurohypophysis +relationship: contributes_to_morphology_of UBERON:0002198 ! neurohypophysis +relationship: part_of UBERON:0002198 {source="NIFSTD"} ! neurohypophysis +relationship: part_of UBERON:0002198 {inconsistent_with="NIFSTD", source="FMA", source="MA", source="ZFA"} ! neurohypophysis + +[Term] +id: UBERON:0002435 +name: striatum +def: "A region of the forebrain consisting of the caudate nucleus, putamen and fundus striati.[GO]." [GOC:jl, http://en.wikipedia.org/wiki/Striatum] +subset: pheno_slim +subset: uberon_slim +synonym: "caudate putamen" RELATED [BIRNLEX:1672] +synonym: "corpus striatum" RELATED [MA:0000891] +synonym: "corpus striatum (Zilles)" RELATED LATIN [NeuroNames:225] +synonym: "dorsal striatum" RELATED [BIRNLEX:1672] +synonym: "neostriatum" EXACT [BIRNLEX:1672] +synonym: "neostriatum" EXACT [GO:0021756, http://en.wikipedia.org/wiki/Striatum] +synonym: "neuraxis striatum" EXACT [FMA:83683] +synonym: "striate nucleus" EXACT [GO:0021756, http://en.wikipedia.org/wiki/Striatum] +synonym: "striated nucleus" RELATED [BTO:0000418] +synonym: "striatum" EXACT [BIRNLEX:1672] +synonym: "striatum of neuraxis" EXACT [FMA:83683] +xref: BAMS:STR +xref: BAMS:Str +xref: BAMS:Striatum +xref: BIRNLEX:1672 +xref: BM:N +xref: BTO:0000418 +xref: DHBA:10333 +xref: DMBA:15851 +xref: EFO:0000109 +xref: EMAPA:17549 +xref: FMA:77618 +xref: FMA:83683 +xref: HBA:4277 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=225 {source="BIRNLEX:1672"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=225 +xref: http://en.wikipedia.org/wiki/Striatum +xref: http://linkedlifedata.com/resource/umls/id/C0162512 +xref: MA:0000891 +xref: MBA:477 +xref: MESH:A08.186.211.730.885.105.487.550 +xref: NCIT:C111122 +xref: ncithesaurus:Striatum +xref: PBA:10080 +xref: UMLS:C0162512 {source="BIRNLEX:1672"} +is_a: UBERON:0011300 ! gray matter of telencephalon +relationship: contributes_to_morphology_of UBERON:0010011 ! collection of basal ganglia +relationship: part_of UBERON:0000204 {source="GO"} ! ventral part of telencephalon +relationship: part_of UBERON:0000369 {source="BTO"} ! corpus striatum +relationship: part_of UBERON:0006098 {source="NIFSTD"} ! basal nuclear complex + +[Term] +id: UBERON:0002436 +name: primary visual cortex +def: "A subdivision of the cytoarchitecturally defined occipital region of cerebral cortex in the human. Defined by the band of Gennari, which gives it the name striate (furrowed) area, it occupies the banks of the calcarine sulcus which are located in the cuneus and the lingual gyrus of the occipital lobe. Cytoarchitecturally it is bounded by the area 18 of Brodmann (human) which surrounds it ( Brodmann-1909 ). In the mouse ( Paxinos-2001 ) and the rat ( Swanson-1998 ) it is located on the dorsolateral surface of the cerebral hemisphere[BrainInfo]." [BrainInfo:2102] +subset: pheno_slim +subset: uberon_slim +synonym: "area 17 of Brodmann" RELATED [http://en.wikipedia.org/wiki/Visual_cortex] +synonym: "area 17 of Brodmann-1909" EXACT [BIRNLEX:1748] +synonym: "area striata" RELATED [] +synonym: "B09-17" BROAD ABBREVIATION [BIRNLEX:1748, NIFSTD:SumsDB_abbrevSource] +synonym: "b09-17" EXACT [BIRNLEX:1748] +synonym: "BA17" EXACT ABBREVIATION [] +synonym: "BA17" RELATED ABBREVIATION [] +synonym: "BA17" RELATED [http://en.wikipedia.org/wiki/Visual_cortex] +synonym: "Brodmann (1909) area 17" EXACT [BIRNLEX:1748] +synonym: "Brodmann area 17" EXACT [http://en.wikipedia.org/wiki/Visual_cortex] +synonym: "Brodmann area 17" RELATED [http://en.wikipedia.org/wiki/Visual_cortex] +synonym: "Brodmann area 17, striate" EXACT [BIRNLEX:1748] +synonym: "calcarine cortex" RELATED [BrainInfo:2102] +synonym: "nerve X" RELATED [NeuroNames:702] +synonym: "occipital visual neocortex" RELATED [GEO:GSM336648] +synonym: "primary visual area" RELATED [BAMS:VISp] +synonym: "striate area" RELATED [BAMS:17] +synonym: "striate cortex" EXACT [FMA:236871, http://en.wikipedia.org/wiki/Visual_cortex] +synonym: "V1" RELATED [http://en.wikipedia.org/wiki/Visual_cortex] +synonym: "visual area one" RELATED [http://en.wikipedia.org/wiki/Visual_cortex] +synonym: "visual area V1" RELATED [BTO:0004703] +synonym: "visual association area" RELATED [http://en.wikipedia.org/wiki/Visual_cortex] +synonym: "visual association cortex" RELATED [http://en.wikipedia.org/wiki/Visual_cortex] +xref: BAMS:17 +xref: BAMS:V1 +xref: BAMS:VISp +xref: BIRNLEX:1748 +xref: BM:Tel-Cx-V1 +xref: BTO:0004703 +xref: EMAPA:35708 +xref: FMA:236871 +xref: FMA:68614 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=702 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=702 {source="BIRNLEX:1748"} +xref: http://linkedlifedata.com/resource/umls/id/C0038446 +xref: http://linkedlifedata.com/resource/umls/id/C1272535 +xref: http://www.snomedbrowser.com/Codes/Details/384772005 +xref: MA:0000914 +xref: MBA:385 +xref: NCIT:C97340 +xref: NLX:143552 +xref: PBA:10026 +xref: UMLS:C0038446 {source="ncithesaurus:Primary_Visual_Cortex"} +xref: UMLS:C1272535 {source="BIRNLEX:1748"} +is_a: UBERON:0013529 {source="FMA"} ! Brodmann area +is_a: UBERON:0035014 {source="NIFSTD"} ! functional part of brain +relationship: contributes_to_morphology_of UBERON:0000956 ! cerebral cortex +relationship: contributes_to_morphology_of UBERON:0002021 ! occipital lobe +relationship: part_of UBERON:0000411 {source="WP"} ! visual cortex + +[Term] +id: UBERON:0002437 +name: cerebral hemisphere white matter +def: "White matter that is part of a cerebral hemisphere." [https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "cerebral hemisphere white matter" EXACT [] +synonym: "cerebral white matter" EXACT [MA:0000945] +synonym: "hemisphere white matter" RELATED [] +synonym: "region of cerebral white matter" RELATED [FMA:256174] +synonym: "substantia medullaris cerebri" RELATED LATIN [NeuroNames:189] +synonym: "white matter structure of cerebral hemisphere" EXACT [FMA:61822] +xref: BAMS:cw +xref: BIRNLEX:711 +xref: BTO:0000236 +xref: CALOHA:TS-2362 +xref: EMAPA:35237 +xref: FMA:241998 +xref: FMA:256174 +xref: FMA:61822 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=189 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=189 {source="BIRNLEX:711"} +xref: http://linkedlifedata.com/resource/umls/id/C0152295 +xref: http://linkedlifedata.com/resource/umls/id/C1284115 +xref: http://www.snomedbrowser.com/Codes/Details/361691006 +xref: MA:0000945 +xref: NCIT:C49347 +xref: UMLS:C0152295 {source="ncithesaurus:Cerebral_White_Matter"} +xref: UMLS:C0152295 {source="BIRNLEX:711"} +xref: UMLS:C1284115 {source="BIRNLEX:711"} +is_a: UBERON:0011299 ! white matter of telencephalon +intersection_of: UBERON:0002316 ! white matter +intersection_of: part_of UBERON:0001869 ! cerebral hemisphere +relationship: part_of UBERON:0001869 ! cerebral hemisphere + +[Term] +id: UBERON:0002438 +name: ventral tegmental nucleus +def: "A nucleus of brain that is part of a ventral tegmental area." [OBOL:automatic] +subset: vertebrate_core +synonym: "anterior tegmental nuclei" RELATED INCONSISTENT [FMA:72435] +synonym: "anterior tegmental nucleus" RELATED INCONSISTENT [FMA:72435, http://www.medilexicon.com/medicaldictionary.php?t=61761] +synonym: "deep tegmental nucleus of Gudden" EXACT [FMA:72435] +synonym: "ganglion profundum tegmenti" RELATED LATIN [NeuroNames:518] +synonym: "ganglion tegmenti ventrale" RELATED LATIN [NeuroNames:518] +synonym: "nucleus of Gudden" RELATED [MA:0001031] +synonym: "nucleus tegmentales anteriores" RELATED [FMA:TA] +synonym: "nucleus tegmentalis anterior" RELATED [FMA:TA] +synonym: "nucleus tegmenti ventralis" RELATED LATIN [NeuroNames:518] +synonym: "nucleus ventralis tegmenti" RELATED LATIN [NeuroNames:518] +synonym: "nucleus ventralis tegmenti (Gudden)" RELATED LATIN [NeuroNames:518] +synonym: "rostral tegmental nucleus" RELATED [TAO:0000275] +synonym: "ventral raphe tegmental nucleus" EXACT [FMA:72435] +synonym: "ventral tegmental nuclei" EXACT [FMA:72435] +synonym: "ventral tegmental nucleus (gudden)" EXACT [FMA:72435] +synonym: "ventral tegmental nucleus of Gudden" EXACT [FMA:72435] +synonym: "VTg" BROAD ABBREVIATION [BIRNLEX:1421, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:VTg +xref: BAMS:VTN +xref: BIRNLEX:1421 +xref: DHBA:12266 +xref: DMBA:17007 +xref: EMAPA:35914 +xref: FMA:72435 +xref: HBA:9069 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=518 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=518 {source="BIRNLEX:1421"} +xref: http://linkedlifedata.com/resource/umls/id/C0175394 +xref: http://www.snomedbrowser.com/Codes/Details/369244006 +xref: MA:0001031 +xref: MBA:757 +xref: TAO:0000275 +xref: UMLS:C0175394 {source="BIRNLEX:1421"} +xref: ZFA:0000275 +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus +disjoint_from: UBERON:0010036 ! anterior tegmental nucleus +relationship: part_of UBERON:0001943 {conflicts_with="DHBA", conflicts_with="EMAPA", conflicts_with="MA", source="FMA", source="HBA", source="NIFSTD"} ! midbrain tegmentum + +[Term] +id: UBERON:0002439 +name: myenteric nerve plexus +def: "One of two ganglionated neural networks which together form the enteric nervous system. The myenteric (Auerbach's) plexus is located between the longitudinal and circular muscle layers of the gut. Its neurons project to the circular muscle, to other myenteric ganglia, to submucosal ganglia, or directly to the epithelium, and play an important role in regulating and patterning gut motility." [NLXANAT:100306] +subset: pheno_slim +subset: uberon_slim +synonym: "Auberbach plexus" EXACT [NLXANAT:100306] +synonym: "Auberbach's plexus" EXACT [NLXANAT:100306] +synonym: "Auberbachs plexus" EXACT [NLXANAT:100306] +synonym: "Auerbach's plexus" EXACT [FMA:63252, HP:0002251] +synonym: "Meissner's plexus" RELATED INCONSISTENT [FMA:63252] +synonym: "myenteric plexus" EXACT [] +synonym: "plexus myentericus" RELATED [BTO:0002436] +synonym: "plexus nervosus submucosus" EXACT LATIN [FMA:63252, FMA:TA] +synonym: "plexus submucosus" EXACT LATIN [FMA:63252, FMA:TA] +synonym: "Remak's plexus" EXACT [FMA:63252] +synonym: "submucous plexus" RELATED [] +xref: Auerbach's:plexus +xref: BAMS:myp +xref: BTO:0002436 +xref: EMAPA:32847 +xref: FMA:63252 +xref: GAID:798 +xref: http://linkedlifedata.com/resource/umls/id/C0027028 +xref: http://www.snomedbrowser.com/Codes/Details/267716001 +xref: MA:0001148 +xref: MESH:D009197 +xref: NCIT:C52748 +xref: NLXANAT:100306 +xref: UMLS:C0027028 {source="ncithesaurus:Myenteric_Nerve_Plexus"} +is_a: UBERON:0000429 ! enteric plexus +relationship: contributes_to_morphology_of UBERON:0002005 ! enteric nervous system +relationship: part_of UBERON:0012367 {source="FMA"} ! muscle layer of intestine + +[Term] +id: UBERON:0002440 +name: inferior cervical ganglion +def: "The inferior cervical ganglion is situated between the base of the transverse process of the last cervical vertebra and the neck of the first rib, on the medial side of the costocervical artery. Its form is irregular; it is larger in size than the middle cervical ganglion, and is frequently fused with the first thoracic ganglion. [WP,unvetted]." [http://en.wikipedia.org/wiki/Inferior_cervical_ganglion] +subset: uberon_slim +synonym: "cervico-thoracic" RELATED [EMAPA:18439] +synonym: "cervico-thoracic ganglion" RELATED [EMAPA:18439] +synonym: "ganglion cervicale inferioris" RELATED [BTO:0000240] +synonym: "ganglion cervicale inferius" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_cervical_ganglion] +synonym: "stellate ganglion" RELATED [MA:0001154] +synonym: "variant cervical ganglion" EXACT [] +xref: BAMS:ICGn +xref: BTO:0000240 +xref: EHDAA:8939 +xref: EMAPA:18439 +xref: FMA:6961 +xref: http://en.wikipedia.org/wiki/Inferior_cervical_ganglion +xref: http://linkedlifedata.com/resource/umls/id/C0229000 +xref: http://www.snomedbrowser.com/Codes/Details/279280008 +xref: MA:0001154 +xref: NCIT:C92211 +xref: RETIRED_EHDAA2:0000815 +xref: UMLS:C0229000 {source="ncithesaurus:Inferior_Cervical_Ganglion"} +is_a: UBERON:0001991 ! cervical ganglion + +[Term] +id: UBERON:0002441 +name: cervicothoracic ganglion +def: "the group of neurons formed by the fusion of the inferior cervical and first thoracic ganglia" [ISBN:0-683-40008-8, MESH:A08.340.315.350.800, MP:0001017] +subset: pheno_slim +subset: uberon_slim +synonym: "cervicothoracic sympathetic ganglion" EXACT [] +synonym: "ganglion cervicothoracicum" EXACT LATIN [FMA:6469, FMA:TA] +synonym: "ganglion stellatum" EXACT LATIN [FMA:6469, FMA:TA] +synonym: "stellate ganglion" EXACT [] +xref: BAMS:GSTL +xref: BTO:0001815 +xref: Cervicothoracic:ganglion +xref: EMAPA:18226 +xref: FMA:6469 +xref: GAID:711 +xref: http://www.snomedbrowser.com/Codes/Details/181101006 +xref: MA:0001157 +xref: MESH:D013233 +is_a: UBERON:0001991 ! cervical ganglion + +[Term] +id: UBERON:0002442 +name: axillary nerve trunk +synonym: "circumflex nerve trunk" RELATED [MA:0001175] +synonym: "right axillary neural trunk" EXACT [] +synonym: "trunk of right axillary nerve" EXACT [FMA:65265] +xref: EMAPA:37719 {source="MA:th"} +xref: FMA:65265 +xref: MA:0001175 +is_a: UBERON:0002464 ! nerve trunk +intersection_of: UBERON:0002464 ! nerve trunk +intersection_of: part_of UBERON:0001493 ! axillary nerve +relationship: part_of UBERON:0001493 ! axillary nerve + +[Term] +id: UBERON:0002443 +name: choroidal blood vessel +def: "A blood vessel that is part of a choroid [Automatically generated definition]." [OBOL:automatic] +comment: cannot find singular in FMA, using Set class +subset: pheno_slim +synonym: "blood vessel of choroid" EXACT [OBOL:automatic] +synonym: "blood vessel of choroid coat" EXACT [OBOL:automatic] +synonym: "blood vessel of choroidea" EXACT [OBOL:automatic] +synonym: "blood vessel of posterior uvea" EXACT [OBOL:automatic] +synonym: "choroid blood vessel" EXACT [OBOL:automatic] +synonym: "choroid blood vessels" EXACT [] +synonym: "choroid blood vessels set" EXACT [] +synonym: "choroid coat blood vessel" EXACT [OBOL:automatic] +synonym: "choroidea blood vessel" EXACT [OBOL:automatic] +synonym: "posterior uvea blood vessel" EXACT [OBOL:automatic] +synonym: "set of choroid blood vessels" RELATED [FMA:76550] +synonym: "vasa sanguinea choroideae" EXACT LATIN [FMA:76550, FMA:TA] +xref: EMAPA:17828 +xref: FMA:76550 +xref: MA:0001237 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0001776 ! optic choroid +relationship: part_of UBERON:0001776 ! optic choroid + +[Term] +id: UBERON:0002444 +name: lens fiber +def: "A region of the lens consisting of packed elongated enucleate cells packed with crystallin" [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "fibrae lentis" EXACT LATIN [FMA:76827, FMA:TA] +synonym: "lens fibers" EXACT [] +synonym: "lens fibers set" EXACT [] +synonym: "lens fibre" RELATED [EMAPA:17841] +synonym: "lens fibres" EXACT [] +synonym: "set of lens fibers" RELATED [FMA:76827] +xref: BTO:0000724 +xref: CALOHA:TS-0544 +xref: EHDAA:4745 +xref: EHDAA:9065 +xref: EMAPA:17841 +xref: FMA:76827 +xref: http://linkedlifedata.com/resource/umls/id/C0229224 +xref: Lens_fibers +xref: MA:0001304 +xref: NCIT:C32976 +xref: RETIRED_EHDAA2:0000979 +xref: UMLS:C0229224 {source="ncithesaurus:Lens_Fiber"} +xref: VHOG:0000444 +xref: XAO:0004096 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0034944 ! zone of organ +relationship: contributes_to_morphology_of UBERON:0000965 ! lens of camera-type eye +relationship: part_of UBERON:0000965 ! lens of camera-type eye + +[Term] +id: UBERON:0002445 +name: ulnare +def: "The postaxial bone of the proximal carpal region. Found in close approximation to the ulna, often in articulation[PHENOSCAPE:ad]." [https://github.com/obophenotype/uberon/issues/114, PHENOSCAPE:ad] +subset: uberon_slim +synonym: "cuneiform bone of hand" EXACT [] +synonym: "cuneiform bone of manus" EXACT [] +synonym: "cuneiform of hand" RELATED [MA:0001347] +synonym: "os triquetrum" EXACT LATIN [FMA:23715, FMA:TA] +synonym: "os ulnare" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "triangular" RELATED [MA:0001347] +synonym: "triangular bone" EXACT [] +synonym: "triquetral" EXACT [MA:0001347, NCBITaxon:9606] +synonym: "triquetral bone" EXACT [] +synonym: "triquetrum" RELATED [MA:0001347] +synonym: "ulnar carpal bone" RELATED [MA:0001347] +xref: AAO:0000845 +xref: EMAPA:36167 +xref: FMA:23715 +xref: galen:Triquetral +xref: http://en.wikipedia.org/wiki/Triquetral +xref: http://linkedlifedata.com/resource/umls/id/C0223739 +xref: http://www.snomedbrowser.com/Codes/Details/181965000 +xref: MA:0001347 +xref: NCIT:C12858 +xref: UMLS:C0223739 {source="ncithesaurus:Triangular_Bone"} +is_a: UBERON:0001480 ! proximal carpal bone +intersection_of: UBERON:0001480 ! proximal carpal bone +intersection_of: proximally_connected_to UBERON:0001424 ! ulna +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +relationship: postaxialmost_part_of UBERON:0009880 ! carpal skeleton +relationship: proximally_connected_to UBERON:0001424 ! ulna + +[Term] +id: UBERON:0002446 +name: patella +def: "A large sesamoid bone found in the distal femur/proximal tibial region of the hindlimb of tetrapods. The patella is the attachment site for proximal hindlimb tendons.[PHENOSCAPE:ad]" [https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=3470151&group_id=76834, PHENOSCAPE:ad] +comment: The patella, also known as the knee cap or kneepan, is the largest sesamoid bone in the human body. The primary functional role of the patella is knee extension. The patella has convergently evolved in placental mammals and birds; marsupials have only rudimentary, non-ossified patellae. In more primitive tetrapods, including living amphibians and reptiles, the muscle tendons from the upper leg are attached directly to the tibia, and the patella is not present. See also: fabella. +subset: pheno_slim +subset: uberon_slim +synonym: "knee bone" RELATED [FMA:24485] +synonym: "knee cap" RELATED [http://en.wikipedia.org/wiki/Patella] +synonym: "patella" RELATED LATIN [http://en.wikipedia.org/wiki/Patella] +xref: EMAPA:35668 +xref: FMA:24485 +xref: GAID:203 +xref: galen:Patella +xref: http://en.wikipedia.org/wiki/Patella +xref: http://linkedlifedata.com/resource/umls/id/C0030647 +xref: http://www.snomedbrowser.com/Codes/Details/182083008 +xref: MA:0001374 +xref: MESH:A02.835.232.500.624 +xref: NCIT:C33282 +xref: UMLS:C0030647 {source="ncithesaurus:Patella"} +is_a: UBERON:0001479 {source="FMA"} ! sesamoid bone +is_a: UBERON:0005893 ! leg bone +is_a: UBERON:0011141 ! appendicular ossicle +intersection_of: UBERON:0001474 ! bone element +intersection_of: connected_to UBERON:0000981 ! femur +intersection_of: part_of UBERON:0001465 ! knee +relationship: adjacent_to UBERON:0001485 ! knee joint +relationship: connected_to UBERON:0000981 ! femur +relationship: part_of UBERON:0001465 ! knee + +[Term] +id: UBERON:0002447 +name: palatine gland +def: "The palatine glands form a continuous layer on its posterior surface and around the uvula. They are primarily mucous secreting glands, as opposed to serous or mixed secreting glands. [WP,unvetted]." [http://en.wikipedia.org/wiki/Palatine_glands] +subset: pheno_slim +subset: uberon_slim +synonym: "palatine glands set" EXACT [] +synonym: "palatine mucuous gland" EXACT [] +synonym: "palatine salivary gland" EXACT [] +synonym: "salivary palatine gland" EXACT [] +xref: EMAPA:35643 +xref: FMA:59795 +xref: http://linkedlifedata.com/resource/umls/id/C0930557 +xref: http://www.snomedbrowser.com/Codes/Details/13604002 +xref: MA:0001584 +xref: NCIT:C33249 +xref: Palatine:glands +xref: UMLS:C0930557 {source="ncithesaurus:Palatine_Salivary_Gland"} +is_a: UBERON:0000414 {source="MP"} ! mucous gland +is_a: UBERON:0001830 ! minor salivary gland +relationship: part_of UBERON:0007375 ! roof of mouth + +[Term] +id: UBERON:0002448 +name: fungiform papilla +def: "Any of the mushroom-shaped papillae, which have a single taste bud at the tip, located mostly on the dorsal anterior portion of the tongue" [MGI:smb, MP:0006257] +subset: pheno_slim +subset: uberon_slim +synonym: "fungiform papilla of tongue" EXACT [FMA:54821] +synonym: "fungiform papillae" EXACT PLURAL [] +synonym: "fungiform papillae set" EXACT PLURAL [] +synonym: "papillae fungiformes" RELATED LATIN [http://en.wikipedia.org/wiki/Fungiform_papilla] +xref: BIRNLEX:4106 +xref: EMAPA:18272 +xref: FMA:54821 +xref: Fungiform:papilla +xref: http://linkedlifedata.com/resource/umls/id/C0226968 +xref: http://linkedlifedata.com/resource/umls/id/C0545784 +xref: http://linkedlifedata.com/resource/umls/id/C1267558 +xref: http://www.snomedbrowser.com/Codes/Details/80673002 +xref: MA:0001595 +xref: NCIT:C32644 +xref: UMLS:C0226968 {source="BIRNLEX:4106"} +xref: UMLS:C0545784 {source="BIRNLEX:4106"} +xref: UMLS:C0545784 {source="ncithesaurus:Fungiform_Papilla"} +xref: UMLS:C1267558 {source="BIRNLEX:4106"} +is_a: UBERON:0014389 ! gustatory papilla of tongue + +[Term] +id: UBERON:0002450 +name: decidua +def: "The maternal uterine-derived portion of the placenta" [http://www.ncbi.nlm.nih.gov/pubmed/11433360, MP:0004256] +subset: pheno_slim +subset: uberon_slim +synonym: "decidous membrane" EXACT [FMA:85538] +synonym: "decidua basalis" RELATED [] +synonym: "endometrium" RELATED [] +synonym: "extraembryonic part of placenta" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "extraembryonic placenta" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "maternal decidual layer" RELATED [MP:0004256] +synonym: "maternal part of placenta" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "maternal placenta" RELATED [EMAPA:35269] +synonym: "maternal placenta" RELATED [GOC:dph] +synonym: "placenta maternal decidual layer" RELATED [] +synonym: "uterine decidua" RELATED [BTO:0001360] +xref: BTO:0001360 +xref: CALOHA:TS-0193 +xref: EMAPA:35269 +xref: FMA:85538 +xref: GAID:378 +xref: http://en.wikipedia.org/wiki/Decidua +xref: http://linkedlifedata.com/resource/umls/id/C0011106 +xref: http://www.snomedbrowser.com/Codes/Details/362842004 +xref: MA:0001722 +xref: MAT:0000290 +xref: MESH:D003656 +xref: MIAA:0000290 +xref: NCIT:C32425 +xref: UMLS:C0011106 {source="ncithesaurus:Decidua"} +is_a: UBERON:0000478 {source="FMA"} ! extraembryonic structure +relationship: contributes_to_morphology_of UBERON:0001987 ! placenta +relationship: develops_from UBERON:0000459 ! uterine wall +relationship: part_of UBERON:0001987 {component="maternal", source="MA"} ! placenta + +[Term] +id: UBERON:0002451 +name: endometrial gland +def: "The mucous secreting gland associated with the mucuous membrane lining the uterus." [http://en.wikipedia.org/wiki/Uterine_glands] +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +synonym: "endometrial gland" EXACT [BTO:0003433] +synonym: "endometrial mucuous gland" EXACT [] +synonym: "endometrium gland" EXACT [] +synonym: "glandulae uterinae" EXACT LATIN [FMA:71647, FMA:TA] +synonym: "glandulae uterinae" RELATED LATIN [http://en.wikipedia.org/wiki/Uterine_glands] +synonym: "uterine gland" EXACT [] +xref: BTO:0003433 +xref: BTO:0004518 +xref: EMAPA:29919 +xref: http://linkedlifedata.com/resource/umls/id/C1183035 +xref: http://www.snomedbrowser.com/Codes/Details/361377009 +xref: MA:0001726 +xref: NCIT:C33842 +xref: UMLS:C1183035 {source="ncithesaurus:Uterine_Gland"} +xref: Uterine:glands +is_a: UBERON:0000414 {source="MP"} ! mucous gland +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005179 ! pelvic region element +is_a: UBERON:0005398 ! female reproductive gland +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0001295 ! endometrium +relationship: fma_set_term FMA:71647 +relationship: part_of UBERON:0012276 ! endometrium glandular epithelium + +[Term] +id: UBERON:0002453 +name: ethmoid sinus +def: "the evaginations of the mucous membrane of the nasal cavity into the ethmoidal bony labyrinth, forming multiple small paranasal sinuses" [ISBN:0-683-40008-8, MP:0002245] +subset: pheno_slim +subset: uberon_slim +synonym: "cellulae ethmoidales" RELATED LATIN [http://en.wikipedia.org/wiki/Ethmoid_sinus] +synonym: "ethmoidal air cell" RELATED [FMA:84115] +synonym: "ethmoidal bone sinus" EXACT [http://en.wikipedia.org/wiki/Ethmoid_bone_sinus] +synonym: "ethmoidal sinus" EXACT [FMA:84115] +xref: FMA:84115 +xref: GAID:356 +xref: http://en.wikipedia.org/wiki/Ethmoid_bone_sinus +xref: http://linkedlifedata.com/resource/umls/id/C0015028 +xref: http://www.snomedbrowser.com/Codes/Details/181206009 +xref: MA:0001792 +xref: MESH:D005005 +xref: NCIT:C12276 +xref: UMLS:C0015028 {source="ncithesaurus:Ethmoid_Sinus"} +is_a: UBERON:0001825 {source="FMA"} ! paranasal sinus + +[Term] +id: UBERON:0002454 +name: dorsal metacarpal artery +def: "Aanastomosis of dorsal carpal branch of the radial artery and the dorsal carpal branch of the ulnar artery near the back of the wrist. It is made up of the dorsal carpal branches of both the ulnar and radial arteries. It also anastomoses with the anterior interosseous artery and the posterior interosseous artery. The arch gives off three dorsal metacarpal arteries." [http://en.wikipedia.org/wiki/Dorsal_metacarpal_artery] +subset: uberon_slim +synonym: "arteriae metacarpales dorsales" EXACT LATIN [FMA:70800, FMA:TA] +synonym: "dorsal metacarpal arteries" EXACT [] +synonym: "dorsal metacarpal arteries set" EXACT [] +synonym: "set of dorsal metacarpal arteries" RELATED [FMA:70800] +xref: EMAPA:37079 {source="MA:th"} +xref: FMA:70800 +xref: http://en.wikipedia.org/wiki/Dorsal_metacarpal_artery +xref: http://linkedlifedata.com/resource/umls/id/C0447094 +xref: http://www.snomedbrowser.com/Codes/Details/244320002 +xref: MA:0001944 +xref: NCIT:C52980 +xref: UMLS:C0447094 {source="ncithesaurus:Dorsal_Metacarpal_Artery"} +is_a: UBERON:0001637 ! artery + +[Term] +id: UBERON:0002455 +name: common plantar digital arteries +def: "." [http://en.wikipedia.org/wiki/Common_plantar_digital_arteries] +synonym: "arteriae digitales plantares communes" EXACT LATIN [FMA:70821, FMA:TA] +synonym: "arteriae digitales plantares communes" RELATED LATIN [http://en.wikipedia.org/wiki/Common_plantar_digital_arteries] +synonym: "common plantar digital arteries" EXACT [] +synonym: "common plantar digital arteries set" EXACT [FMA:70821] +synonym: "set of common plantar digital arteries" RELATED [FMA:70821] +xref: EMAPA:37208 {source="MA:th"} +xref: FMA:70821 +xref: http://en.wikipedia.org/wiki/Common_plantar_digital_arteries +xref: MA:0001966 +is_a: UBERON:0006138 ! plantar digital artery +relationship: has_part UBERON:0001410 ! common palmar digital artery + +[Term] +id: UBERON:0002456 +name: internal thoracic artery +def: "An artery that supplies the anterior chest wall and the breasts. It is a paired artery, with one running along each side of the sternum, to continue after its bifurcation as the superior epigastric and musculophrenic arteries. [WP,unvetted]." [http://en.wikipedia.org/wiki/Internal_thoracic_artery] +subset: uberon_slim +synonym: "arteria mammaria interna" RELATED LATIN [http://en.wikipedia.org/wiki/Internal_thoracic_artery] +synonym: "arteria thoracica interna" RELATED LATIN [http://en.wikipedia.org/wiki/Internal_thoracic_artery] +synonym: "internal mammary artery" EXACT PENDING_REVIEW [MA:0001982] +synonym: "internal thoracic mammary artery" EXACT [] +synonym: "mammary artery" RELATED [EMAPA:18617] +xref: EHDAA2:0000880 +xref: EHDAA:8585 +xref: EMAPA:18617 +xref: FMA:3960 +xref: http://en.wikipedia.org/wiki/Internal_thoracic_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226276 +xref: http://www.snomedbrowser.com/Codes/Details/244239009 +xref: MA:0001982 +xref: MA:0001984 +xref: NCIT:C52941 +xref: OpenCyc:Mx4rMe0MIao8EduQrwACs5b6Bw +xref: UMLS:C0226276 {source="ncithesaurus:Internal_Mammary_Artery"} +is_a: UBERON:0004573 ! systemic artery +relationship: branching_part_of UBERON:0001533 ! subclavian artery +relationship: part_of UBERON:0001533 ! subclavian artery +relationship: supplies UBERON:0000310 ! breast + +[Term] +id: UBERON:0002457 +name: intersomitic artery +alt_id: UBERON:0006001 +def: "The small branching sprouts of the dorsal aorta that grow across the medial surface of the somite, turn right angles to grow over that surface and then fuse with other sprouts and form the vertebral arteries adjacent to the neural tube; the intersomitic arteries supply the body wall and persist in the adult as the posterior intercostal, subcostal and the lumbar arteries" [MP:0010662] +subset: pheno_slim +subset: vertebrate_core +synonym: "intersegmental arteries" RELATED PLURAL [ZFA:0001061] +synonym: "intersegmental artery" EXACT [ZFA:0001061] +xref: EHDAA2:0000882 +xref: EHDAA:4340 +xref: EMAPA:17616 +xref: http://www.snomedbrowser.com/Codes/Details/360401001 +xref: MA:0001985 +xref: TAO:0001061 +xref: VHOG:0000225 +xref: XAO:0004165 +xref: ZFA:0001061 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0014907 ! intersomitic vessel + +[Term] +id: UBERON:0002458 +name: spinal artery +def: "Arteries that supply the spinal cord." [http://en.wikipedia.org/wiki/Spinal_artery, https://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +subset: vertebrate_core +synonym: "spinal arteries" EXACT PLURAL [ZFA:0000682] +xref: EHDAA2:0001890 +xref: EHDAA:4355 +xref: EMAPA:18241 +xref: http://linkedlifedata.com/resource/umls/id/C0447043 +xref: http://www.snomedbrowser.com/Codes/Details/244228006 +xref: MA:0002043 +xref: NCIT:C33587 +xref: Spinal:artery +xref: TAO:0000682 +xref: UMLS:C0447043 {source="ncithesaurus:Spinal_Artery"} +xref: ZFA:0000682 +is_a: UBERON:0004573 ! systemic artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0002240 ! spinal cord +relationship: supplies UBERON:0002240 ! spinal cord + +[Term] +id: UBERON:0002459 +name: inferior palpebral vein +def: "A blood vessel that drains from from an lower eyelid." [http://orcid.org/0000-0002-6601-2165] +synonym: "inferior palpebral veins" EXACT [] +synonym: "inferior palpebral veins set" EXACT [] +synonym: "lower palpebral vein" RELATED [MA:0002147] +synonym: "vein of inferior eyelid" EXACT [] +synonym: "venae palpebrales inferiores" RELATED LATIN [FMA:70847, FMA:TA] +xref: EMAPA:37156 {source="MA:th"} +xref: FMA:50913 +xref: http://linkedlifedata.com/resource/umls/id/C1760539 +xref: http://www.snomedbrowser.com/Codes/Details/422559003 +xref: MA:0002147 +xref: NCIT:C53049 +xref: UMLS:C1760539 {source="ncithesaurus:Inferior_Palpebral_Vein"} +is_a: UBERON:0014769 ! palpebral vein +intersection_of: UBERON:0014769 ! palpebral vein +intersection_of: drains UBERON:0001713 ! lower eyelid +relationship: drains UBERON:0001713 ! lower eyelid +relationship: fma_set_term FMA:70847 + +[Term] +id: UBERON:0002460 +name: vesical vein +def: "A tributary of the iliac vein that drains the urinary bladder." [http://en.wikipedia.org/wiki/Vesical_veins, UBERON:cjm] +subset: uberon_slim +synonym: "venae vesicales" EXACT LATIN [FMA:70911, FMA:TA] +synonym: "vesical veins" EXACT PLURAL [] +synonym: "vesical veins set" EXACT [] +xref: EMAPA:37205 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/12683000 +xref: MA:0002263 +xref: Vesical:veins +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0001255 ! urinary bladder +relationship: drains UBERON:0001255 ! urinary bladder +relationship: fma_set_term FMA:70911 +relationship: part_of UBERON:0001317 ! internal iliac vein +relationship: tributary_of UBERON:0001317 ! internal iliac vein + +[Term] +id: UBERON:0002461 +name: anterior abdominal wall muscle +def: "Any skeletal muscle organ that is part of a anterior abdominal wall. Examples: the obliques, pyramidalis and transversus abdominus" [http://orcid.org/0000-0002-6601-2165] +synonym: "muscle of anterior abdominal wall" EXACT [FMA:20278] +synonym: "ventral abdominal wall muscle" EXACT [UBERON:cjm] +xref: EHDAA2:0000125 +xref: EMAPA:17744 +xref: EMAPA:17745 +xref: FMA:20278 +xref: http://linkedlifedata.com/resource/umls/id/C1744565 +xref: MA:0002268 +xref: NCIT:C52890 +xref: UMLS:C1744565 {source="ncithesaurus:Anterior_Abdominal_Wall_Muscle"} +is_a: UBERON:0002378 {is_inferred="true"} ! muscle of abdomen +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0006635 ! anterior abdominal wall +relationship: develops_from UBERON:0006210 {source="EHDAA2"} ! body-wall mesenchyme +relationship: part_of UBERON:0006635 ! anterior abdominal wall + +[Term] +id: UBERON:0002462 +name: erector spinae muscle group +def: "A bundle of muscles and tendons that is paired and runs more or less vertically. It extends throughout the lumbar, thoracic and cervical regions, and lies in the groove to the side of the vertebral column." [http://en.wikipedia.org/wiki/Erector_spinae_muscles] +subset: uberon_slim +synonym: "erector spinae" EXACT [MA:0002289] +synonym: "erector spinalis" RELATED [BTO:0001652] +synonym: "extensor spinae" EXACT [http://en.wikipedia.org/wiki/Erector_spinae] +synonym: "extensor spinae muscle" RELATED [http://en.wikipedia.org/wiki/Erector_spinae] +synonym: "extensor spinae muscles" EXACT [http://en.wikipedia.org/wiki/Erector_spinae] +synonym: "m. erector spinae" RELATED LATIN [http://en.wikipedia.org/wiki/Erector_spinae_muscles] +synonym: "sacrospinalis" EXACT DEPRECATED [BTO:0001652] +xref: BTO:0001652 +xref: EHDAA2:0000454 +xref: EHDAA:9456 +xref: EMAPA:18168 +xref: FMA:71302 +xref: http://en.wikipedia.org/wiki/Erector_spinae_muscles +xref: http://linkedlifedata.com/resource/umls/id/C0224301 +xref: http://www.snomedbrowser.com/Codes/Details/244852007 +xref: MA:0002289 +xref: NCIT:C52902 +xref: OpenCyc:Mx4rwC7lnJwpEbGdrcN5Y29ycA +xref: UMLS:C0224301 {source="ncithesaurus:Erector_Spinae"} +xref: VHOG:0000984 +is_a: UBERON:0001015 {source="FMA"} ! musculature +is_a: UBERON:0003897 {source="EHDAA2"} ! axial muscle +is_a: UBERON:0004518 ! muscle of vertebral column +relationship: adjacent_to UBERON:0001130 ! vertebral column +relationship: develops_from UBERON:0010961 {source="EHDAA2"} ! erector spinae pre-muscle mass +relationship: has_muscle_insertion UBERON:0001076 {notes="Spinous processes of T1 and T2 thoracic vertebrae and the cervical vertebrae", source="dbpedia"} ! neural spine +relationship: has_muscle_insertion UBERON:0002413 {notes="Spinous processes of T1 and T2 thoracic vertebrae and the cervical vertebrae", source="dbpedia"} ! cervical vertebra +relationship: innervated_by UBERON:0006839 {source="dbpedia"} ! dorsal ramus of spinal nerve + +[Term] +id: UBERON:0002463 +name: muscle of posterior compartment of hindlimb stylopod +alt_id: UBERON:0008538 +def: "Any of the posterior thigh muscles. [WP,modified]." [http://en.wikipedia.org/wiki/Hamstring] +subset: uberon_slim +synonym: "hamstring" RELATED [VHOG:0000844] +synonym: "hamstring muscle" EXACT [MA:0002312] +synonym: "muscle of posterior compartment of thigh" EXACT [FMA:22427] +synonym: "muscularis compartimentum femoris posterius" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_compartment_of_thigh] +synonym: "posterior fascial compartment of thigh" RELATED [http://en.wikipedia.org/wiki/Posterior_compartment_of_thigh] +synonym: "posterior femoral muscle" EXACT [FMA:22427] +synonym: "posterior femoral muscles" RELATED [http://en.wikipedia.org/wiki/Posterior_compartment_of_thigh] +synonym: "set of hamstring muscles" RELATED [FMA:81022] +xref: BTO:0003179 +xref: EHDAA2:0000727 +xref: EHDAA:8295 +xref: EMAPA:19145 +xref: FMA:22427 +xref: FMA:81022 +xref: http://en.wikipedia.org/wiki/Hamstring +xref: http://en.wikipedia.org/wiki/Posterior_compartment_of_thigh +xref: http://linkedlifedata.com/resource/umls/id/C0584895 +xref: MA:0002312 +xref: NCIT:C53042 +xref: OpenCyc:Mx4rvVjdtJwpEbGdrcN5Y29ycA +xref: UMLS:C0584895 {source="ncithesaurus:Hamstring"} +xref: VHOG:0000844 +is_a: UBERON:0004252 ! hindlimb stylopod muscle +relationship: has_muscle_antagonist UBERON:0001378 {source="dbpedia"} ! rectus femoris +relationship: has_muscle_insertion UBERON:0000979 {source="dbpedia"} ! tibia +relationship: has_muscle_insertion UBERON:0001446 {source="dbpedia"} ! fibula +relationship: innervated_by UBERON:0001322 {notes="sciatic nerve", source="dbpedia"} ! sciatic nerve + +[Term] +id: UBERON:0002464 +name: nerve trunk +alt_id: UBERON:0001147 +synonym: "peripheral nerve trunk" EXACT [EMAPA:16986] +synonym: "trunk of nerve" EXACT [] +synonym: "trunk of peripheral nerve" EXACT [] +xref: BTO:0000927 +xref: EHDAA:4675 +xref: EMAPA:16986 +xref: FMA:14383 +xref: FMA:5913 +xref: http://www.snomedbrowser.com/Codes/Details/281248001 +xref: MA:0000229 +xref: MA:0002408 +is_a: UBERON:0000122 ! neuron projection bundle +intersection_of: UBERON:0000122 ! neuron projection bundle +intersection_of: trunk_part_of UBERON:0001021 ! nerve +disjoint_from: UBERON:0003439 ! nerve of trunk region +relationship: part_of UBERON:0001021 ! nerve +relationship: trunk_part_of UBERON:0001021 ! nerve + +[Term] +id: UBERON:0002465 +name: lymphoid system +alt_id: UBERON:0002096 +def: "The lymphatic system in vertebrates is a network of conduits that carry a clear fluid called lymph. It also includes the lymphoid tissue through which the lymph travels. Lymphoid tissue is found in many organs, particularly the lymph nodes, and in the lymphoid follicles associated with the digestive system such as the tonsils. The system also includes all the structures dedicated to the circulation and production of lymphocytes, which includes the spleen, thymus, bone marrow and the lymphoid tissue associated with the digestive system[WP]." [http://en.wikipedia.org/wiki/Lymphoid_system] +subset: uberon_slim +subset: vertebrate_core +synonym: "lymphatic circulatory system" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "lymphatic drainage system" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "lymphatic system" NARROW [ZFA:0000385] +synonym: "systema lymphoideum" RELATED LATIN [http://en.wikipedia.org/wiki/Lymphoid_system] +xref: EHDAA2:0001043 +xref: EHDAA:8677 +xref: EMAPA:37664 {source="MA:th"} +xref: FMA:74594 +xref: GAID:931 +xref: http://linkedlifedata.com/resource/umls/id/C0024235 +xref: http://www.snomedbrowser.com/Codes/Details/362589007 +xref: Lymphoid:system +xref: MA:0002435 +xref: MAT:0000197 +xref: MIAA:0000197 +xref: NCIT:C12746 +xref: OpenCyc:Mx4rwQAKT5wpEbGdrcN5Y29ycA +xref: TAO:0000385 +xref: UMLS:C0024235 {source="ncithesaurus:Lymphatic_System"} +xref: VHOG:0000842 +xref: XAO:0003199 +xref: ZFA:0000385 +is_a: UBERON:0000467 ! anatomical system +relationship: part_of UBERON:0002193 {source="FMA"} ! hemolymphoid system +relationship: part_of UBERON:0002405 ! immune system + +[Term] +id: UBERON:0002466 +name: intestine secretion +def: "Clear to pale yellow watery secretions from the glands lining the small intestine walls. Secretion is stimulated by the mechanical pressure of partly digested food in the intestine." [http://en.wikipedia.org/wiki/Succus_entericus] +subset: pheno_slim +subset: uberon_slim +synonym: "intestinal juice" RELATED [BTO:0000644] +synonym: "intestinal secretion" EXACT [FMA:62974] +synonym: "succus entericus" EXACT [http://en.wikipedia.org/wiki/Succus_entericus] +xref: BTO:0000644 +xref: FMA:62974 +xref: GAID:1162 +xref: http://linkedlifedata.com/resource/umls/id/C0021849 +xref: MA:0002515 +xref: MESH:D007419 +xref: NCIT:C32875 +xref: Succus:entericus +xref: UMLS:C0021849 {source="ncithesaurus:Intestinal_Secretion"} +is_a: UBERON:0000456 ! secretion of exocrine gland +intersection_of: UBERON:0000456 ! secretion of exocrine gland +intersection_of: produced_by UBERON:0000160 ! intestine +relationship: produced_by UBERON:0000160 ! intestine + +[Term] +id: UBERON:0002467 +name: filiform papilla +def: "The filiform papillae are thin, long 'V'-shaped cones that don't contain taste buds but are the most numerous. These papillae are mechanical and not involved in gustation covering most of the dorsum (upper surface). They are small and arranged in lines parallel to the V-shaped row of circumvallate papillae, except at the tip of the tongue where they are aligned transversely. Projecting from their apices are numerous filamentous processes, or secondary papillae. These are of a whitish tint, owing to the thickness and density of the epithelium of which they are composed. This epithelium has undergone a peculiar modification as the cells have become cornified and elongated into dense, imbricated, brush-like processes. They contain also a number of elastic fibers, which render them firmer and more elastic than the papillae of mucous membrane generally. The larger and longer papillae of this group are sometimes termed papillae conicae. Fungiform papillae are found dispersed throughout the filiform papillae. [WP,unvetted]." [http://en.wikipedia.org/wiki/Filiform_papilla] +subset: pheno_slim +subset: uberon_slim +synonym: "filiform papilla of tongue" EXACT [FMA:54820] +synonym: "filiform papillae" EXACT [] +synonym: "filiform papillae set" EXACT [] +synonym: "papillae filiformes" RELATED LATIN [http://en.wikipedia.org/wiki/Filiform_papilla] +xref: BIRNLEX:4104 +xref: EMAPA:18873 +xref: Filiform:papilla +xref: FMA:54820 +xref: http://linkedlifedata.com/resource/umls/id/C0226966 +xref: http://linkedlifedata.com/resource/umls/id/C0545782 +xref: http://linkedlifedata.com/resource/umls/id/C1267556 +xref: http://www.snomedbrowser.com/Codes/Details/58743008 +xref: MA:0002678 +xref: NCIT:C32604 +xref: UMLS:C0226966 {source="BIRNLEX:4104"} +xref: UMLS:C0545782 {source="ncithesaurus:Filiform_Papilla"} +xref: UMLS:C0545782 {source="BIRNLEX:4104"} +xref: UMLS:C1267556 {source="BIRNLEX:4104"} +is_a: UBERON:0001726 ! papilla of tongue + +[Term] +id: UBERON:0002468 +name: foliate papilla +def: "Any of the papillae located on the sides of the tongue" [ISBN:0-8036-0655-9, MGI:smb, MP:0006259] +subset: pheno_slim +subset: uberon_slim +synonym: "foliate papilla of tongue" EXACT [FMA:54823] +synonym: "foliate papillae" EXACT [] +synonym: "foliate papillae set" EXACT [] +synonym: "papillae foliatae" RELATED LATIN [http://en.wikipedia.org/wiki/Foliate_papilla] +xref: BIRNLEX:4105 +xref: EMAPA:32788 +xref: FMA:54823 +xref: Foliate:papilla +xref: http://linkedlifedata.com/resource/umls/id/C0226969 +xref: http://linkedlifedata.com/resource/umls/id/C0545785 +xref: http://www.snomedbrowser.com/Codes/Details/362098003 +xref: MA:0002679 +xref: NCIT:C32619 +xref: UMLS:C0226969 {source="BIRNLEX:4105"} +xref: UMLS:C0545785 {source="ncithesaurus:Foliate_Papilla"} +xref: UMLS:C0545785 {source="BIRNLEX:4105"} +is_a: UBERON:0014389 ! gustatory papilla of tongue + +[Term] +id: UBERON:0002469 +name: esophagus mucosa +alt_id: UBERON:0003345 +def: "A mucosa that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] +synonym: "esophageal mucosa" EXACT [] +synonym: "esophageal mucous membrane" EXACT [] +synonym: "esophagus mucosa" EXACT [FMA:62996] +synonym: "esophagus mucous membrane" EXACT [OBOL:automatic] +synonym: "lamina muscularis mucosae oesophageae" EXACT LATIN [FMA:62996, FMA:TA] +synonym: "mucosa of esophagus" EXACT [OBOL:automatic] +synonym: "mucosa of oesophagus" EXACT [OBOL:automatic] +synonym: "mucous membrane of esophagus" EXACT [] +synonym: "mucous membrane of oesophagus" EXACT [FMA:62996] +synonym: "muscularis mucosae of oesophagus" RELATED INCONSISTENT [FMA:62996] +synonym: "oesophageal mucosa" EXACT [FMA:62996] +synonym: "oesophagus mucosa" EXACT [] +synonym: "oesophagus mucous membrane" EXACT [OBOL:automatic] +synonym: "tunica mucosa esophagi" EXACT [] +synonym: "tunica mucosa oesophageae" EXACT LATIN [FMA:62996, FMA:TA] +synonym: "tunica mucosa oesophagi" EXACT [] +synonym: "tunica mucosa oesophagi" RELATED [BTO:0002859] +xref: BTO:0002859 +xref: EMAPA:26981 +xref: FMA:62996 +xref: http://linkedlifedata.com/resource/umls/id/C0227176 +xref: http://www.snomedbrowser.com/Codes/Details/362127004 +xref: MA:0002680 +xref: NCIT:C32538 +xref: UMLS:C0227176 {source="ncithesaurus:Esophageal_Mucosa"} +is_a: UBERON:0000344 ! mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001043 ! esophagus +relationship: part_of UBERON:0001096 ! wall of esophagus + +[Term] +id: UBERON:0002470 +name: autopod region +def: "Terminal segment of free limb, immediately distal to the zeugopod region. The fully developed autopod consists of the autopod skeleton plus associated structures such as integument, muscle tissue, vasculature etc. The autopod is divided into mesopodial, metapodiual, and acropodial segments. Examples: human hand, mouse paw, human foot" [https://github.com/obophenotype/uberon/issues/303, https://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "autopod" BROAD [MA:0002714] +synonym: "autopodial element" RELATED [] +synonym: "autopodial limb segment" EXACT [MA:th] +synonym: "autopodial segment" EXACT [] +synonym: "autopodium" EXACT [] +synonym: "autopodium region" EXACT [] +synonym: "distal free limb segment" EXACT [FMA:83015] +synonym: "distal segment of free limb" EXACT [FMA:83015] +synonym: "distal segment of limb" RELATED [EMAPA:32722] +synonym: "manus/pes" RELATED [] +synonym: "paw" RELATED [] +synonym: "paw/hand/foot/hoof" RELATED [] +synonym: "pod" RELATED [] +xref: BTO:0004359 +xref: EFO:0000877 +xref: EMAPA:32722 +xref: FMA:83015 +xref: http://linkedlifedata.com/resource/umls/id/C0687080 +xref: http://www.snomedbrowser.com/Codes/Details/95936004 +xref: MA:0002714 +xref: MAT:0000091 +xref: MIAA:0000091 +xref: NCIT:C77660 +xref: UMLS:C0687080 {source="ncithesaurus:Paw"} +is_a: UBERON:0002529 ! limb segment +intersection_of: UBERON:0002529 ! limb segment +intersection_of: has_skeleton UBERON:0006717 ! autopodial skeleton +relationship: contributes_to_morphology_of UBERON:0002101 ! limb +relationship: develops_from UBERON:0010130 {evidence="definitional"} ! embryonic autopod plate +relationship: distally_connected_to UBERON:0002471 ! zeugopod +relationship: has_skeleton UBERON:0006717 ! autopodial skeleton + +[Term] +id: UBERON:0002471 +name: zeugopod +def: "The middle free limb segment, between the autopod and stylopod segments. Includes as parts the zeugopodial skeleton. Examples: There are two types of zeugopod: forelimb zeugopod (aka forearm), hindlimb zeugopod (aka crus)." [https://github.com/obophenotype/uberon/issues/101, PHENOSCAPE:curators] +comment: There exists some controversy about which podial segments are present in some fishes, e.g. if the autopod is not newly evolved in tetrapods, there is a question as to which segments are actually present in basal vertebrate taxa.[PHENOSCAPE:curators] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "epipodium" EXACT [MA:th] +synonym: "middle free limb segment" EXACT [FMA:83016] +synonym: "middle limb segment" EXACT [] +synonym: "middle part of limb" BROAD [] +synonym: "middle segment of free limb" RELATED [FMA:83016] +synonym: "zeugopod limb segment" EXACT [MA:th] +synonym: "zeugopodial limb segment" EXACT [MA:th] +synonym: "zeugopodium" EXACT [] +synonym: "zygopod" EXACT [] +synonym: "zygopodium" EXACT [] +xref: EFO:0000878 +xref: FMA:83016 +xref: MA:0002716 +xref: MAT:0000092 +xref: MIAA:0000092 +is_a: UBERON:0002529 ! limb segment +intersection_of: UBERON:0002529 ! limb segment +intersection_of: has_skeleton UBERON:0011584 ! zeugopodial skeleton +property_value: dc-contributor https://github.com/alex-dececchi +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +relationship: distal_to UBERON:0002472 ! stylopod +relationship: has_skeleton UBERON:0011584 ! zeugopodial skeleton +relationship: proximal_to UBERON:0002470 ! autopod region + +[Term] +id: UBERON:0002472 +name: stylopod +def: "The proximal free limb segment. Includes as parts the stylopod skeleton." [http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: uberon_slim +synonym: "propodium" EXACT [MA:th] +synonym: "proximal free limb segment" EXACT [FMA:83014] +synonym: "proximal part of limb" BROAD [] +synonym: "proximal segment of free limb" RELATED [FMA:83014] +synonym: "stylopodial limb segment" EXACT [MA:th] +synonym: "stylopodium" EXACT [] +xref: EFO:0000879 +xref: FMA:83014 +xref: MA:0002717 +xref: MAT:0000093 +xref: MIAA:0000093 +is_a: UBERON:0002529 ! limb segment +intersection_of: UBERON:0002529 ! limb segment +intersection_of: has_skeleton UBERON:0011583 ! stylopodial skeleton +relationship: has_skeleton UBERON:0011583 ! stylopodial skeleton +relationship: proximal_to UBERON:0002471 ! zeugopod + +[Term] +id: UBERON:0002473 +name: intercerebral commissure +def: "A commissure that connects the two cerebral hemispheres. Examples: anterior commissure, corpus callosum." [http://orcid.org/0000-0002-6601-2165] +synonym: "commissure of cerebrum" RELATED [] +synonym: "inter-hemispheric commissure" RELATED [] +synonym: "interhemispheric commissure" RELATED [MA:0002721] +xref: EMAPA:35435 +xref: FMA:67930 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1559 +xref: http://www.snomedbrowser.com/Codes/Details/360567002 +xref: MA:0002721 +is_a: UBERON:0019294 ! commissure of telencephalon +intersection_of: UBERON:0001020 ! nervous system commissure +intersection_of: connects UBERON:0002812 ! left cerebral hemisphere +intersection_of: connects UBERON:0002813 ! right cerebral hemisphere +relationship: connects UBERON:0002812 ! left cerebral hemisphere +relationship: connects UBERON:0002813 ! right cerebral hemisphere +relationship: part_of UBERON:0002437 ! cerebral hemisphere white matter + +[Term] +id: UBERON:0002474 +name: cerebellar peduncular complex +def: "A composite structure of the brain stem, which is subdivided into the superior cerebellar peduncle of pons, the decussation of superior cerebellar peduncle and the superior cerebellar peduncle of midbrain (MM)[NIF, based on NN]." [BIRNLEX:970] +subset: uberon_slim +synonym: "basal ganglia (anatomic)" RELATED [NeuroNames:224] +synonym: "cerebellar peduncles" EXACT [] +synonym: "cerebellar peduncles and decussations" EXACT [BIRNLEX:970] +synonym: "cerebellar peduncles set" EXACT [] +synonym: "cerebellum peduncles" EXACT [] +synonym: "corpus striatum (Savel'ev)" RELATED LATIN [NeuroNames:224] +synonym: "ganglia basales" RELATED LATIN [NeuroNames:224] +synonym: "pedunculi cerebellares" EXACT LATIN [FMA:77791, FMA:TA] +synonym: "set of cerebellar peduncles" RELATED [FMA:77791] +xref: BAMS:cbp +xref: BIRNLEX:970 +xref: Cerebellar:peduncle +xref: FMA:77791 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=224 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=224 {source="BIRNLEX:970"} +xref: http://linkedlifedata.com/resource/umls/id/C0228514 +xref: MBA:752 +xref: UMLS:C0228514 {source="BIRNLEX:970"} +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0002317 {source="NIF-isa"} ! white matter of cerebellum +relationship: part_of UBERON:0014891 {source="MA"} ! brainstem white matter + +[Term] +id: UBERON:0002475 +name: saphenous nerve +def: "The largest cutaneous branch of the femoral nerve. [WP,unvetted]." [http://en.wikipedia.org/wiki/Saphenous_nerve] +subset: uberon_slim +synonym: "nervus saphenus" RELATED LATIN [http://en.wikipedia.org/wiki/Saphenous_nerve] +xref: EMAPA:36625 +xref: FMA:45262 +xref: http://www.snomedbrowser.com/Codes/Details/181079005 +xref: MA:0002761 +xref: OpenCyc:Mx4rvY0kgpwpEbGdrcN5Y29ycA +xref: Saphenous:nerve +is_a: UBERON:0003431 ! leg nerve +relationship: branching_part_of UBERON:0001267 ! femoral nerve +relationship: part_of UBERON:0001267 ! femoral nerve + +[Term] +id: UBERON:0002476 +name: lateral globus pallidus +def: "The more lateral of the two segments of the globus pallidus, abutting the putamen" [BIRNLEX:1610] +subset: uberon_slim +synonym: "external globus pallidus" EXACT [] +synonym: "external pallidum" EXACT [BIRNLEX:1610] +synonym: "external part of globus pallidus" EXACT [BIRNLEX:1610] +synonym: "globus pallidus (rat)" RELATED LATIN [NeuroNames:232] +synonym: "globus pallidus extermal segment" EXACT [BIRNLEX:1610] +synonym: "globus pallidus external segment" EXACT [BIRNLEX:1610, FMA:61839, MA:0002767] +synonym: "globus pallidus externus" EXACT [] +synonym: "globus pallidus lateral part" RELATED [BAMS:GPl] +synonym: "globus pallidus lateral segment" RELATED [MA:0002767] +synonym: "globus pallidus lateralis" EXACT [BTO:0002247] +synonym: "globus pallidus, external segment" RELATED [NeuroNames:232] +synonym: "globus pallidus, lateral part" RELATED [NeuroNames:232] +synonym: "globus pallidus, lateral segment" EXACT [] +synonym: "globus pallidus, pars externa" RELATED LATIN [NeuroNames:232] +synonym: "lateral division of globus pallidus" RELATED [NeuroNames:232] +synonym: "lateral pallidal segment" EXACT [] +synonym: "lateral pallidum" EXACT [BIRNLEX:1610] +synonym: "lateral part of globus pallidus" EXACT [] +synonym: "lateral segment of globus pallidus" EXACT [BIRNLEX:1610] +synonym: "lateral segment of the globus pallidus" RELATED [NeuroNames:232] +synonym: "nucleus lateralis globi pallidi" RELATED LATIN [NeuroNames:232] +synonym: "pallidum dorsal region external segment" RELATED [BAMS:GPe] +synonym: "pallidum I" RELATED [BTO:0002247] +synonym: "pallidus II" EXACT [FMA:61839] +synonym: "pars lateralis globi pallidi medialis" EXACT LATIN [FMA:61839, FMA:TA] +xref: BAMS:EGP +xref: BAMS:GPe +xref: BAMS:GPl +xref: BAMS:LGP +xref: BIRNLEX:1610 +xref: BTO:0002247 +xref: EHDAA2:0004462 +xref: EMAPA:37638 {source="MA:th"} +xref: FMA:61839 +xref: HBA:12897 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=232 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=232 {source="BIRNLEX:1610"} +xref: http://en.wikipedia.org/wiki/Lateral_globus_pallidus +xref: http://linkedlifedata.com/resource/umls/id/C0262267 +xref: http://www.snomedbrowser.com/Codes/Details/361560008 +xref: MA:0002767 +xref: MBA:1022 +xref: PBA:10099 +xref: UMLS:C0262267 {source="BIRNLEX:1610"} +is_a: UBERON:0005401 ! cerebral hemisphere gray matter +disjoint_from: UBERON:0002477 {source="lexical"} ! medial globus pallidus +relationship: part_of UBERON:0001875 ! globus pallidus + +[Term] +id: UBERON:0002477 +name: medial globus pallidus +def: "The more medial segment of the globus pallidus." [BIRNLEX:1555] +comment: See also: endopeduncular nucleus +subset: uberon_slim +synonym: "entopeduncular nucleus" RELATED [MA:0002768] +synonym: "entopeduncular nucleus (monakow)" EXACT [FMA:61840] +synonym: "globus pallidus inernal segment" RELATED [MA:0002768] +synonym: "globus pallidus interna" EXACT LATIN [] +synonym: "globus pallidus internal segment" EXACT [FMA:61840] +synonym: "globus pallidus internus" EXACT LATIN [] +synonym: "globus pallidus internus" EXACT [FMA:61840] +synonym: "globus pallidus medial part" RELATED [BAMS:GPm] +synonym: "globus pallidus medial segment" EXACT [FMA:61840] +synonym: "globus pallidus medial segment" RELATED [MA:0002768] +synonym: "globus pallidus medialis" EXACT [BTO:0002248] +synonym: "globus pallidus medialis" EXACT [FMA:TA] +synonym: "globus pallidus medialis" EXACT LATIN [] +synonym: "globus pallidus pars medialis" RELATED LATIN [NeuroNames:233] +synonym: "globus pallidus, internal segment" RELATED [NeuroNames:233] +synonym: "globus pallidus, medial part" RELATED [NeuroNames:233] +synonym: "globus pallidus, medial segment" EXACT [FMA:61840] +synonym: "globus pallidus, pars interna" RELATED LATIN [NeuroNames:233] +synonym: "internal globus pallidus" EXACT [FMA:61840] +synonym: "internal pallidum" EXACT [BIRNLEX:1555] +synonym: "internal part of globus pallidus" EXACT [BIRNLEX:1555] +synonym: "medial division of globus pallidus" RELATED [NeuroNames:233] +synonym: "medial globus pallidus (entopeduncular nucleus)" RELATED [BAMS:MGP] +synonym: "medial pallidal segment" EXACT [FMA:61840] +synonym: "medial part of globus pallidus" EXACT [FMA:61840] +synonym: "medial segment of globus pallidus" EXACT [BIRNLEX:1555] +synonym: "medial segment of the globus pallidus" RELATED [NeuroNames:233] +synonym: "mesial pallidum" EXACT [FMA:61840] +synonym: "nucleus medialis globi pallidi" RELATED LATIN [NeuroNames:233] +synonym: "pallidum dorsal region internal segment" RELATED [BAMS:GPi] +synonym: "pallidum I" RELATED [] +synonym: "pallidum II" RELATED [BTO:0002248] +synonym: "pallidus I" EXACT [FMA:61840] +synonym: "pallidus I" RELATED [] +synonym: "pars medialis globi pallidi" EXACT LATIN [FMA:61840, FMA:TA] +synonym: "principal medial geniculate nucleus" RELATED [BAMS:MGP] +xref: BAMS:GPi +xref: BAMS:GPm +xref: BAMS:IGP +xref: BAMS:MGP +xref: BIRNLEX:1555 +xref: BTO:0002248 +xref: DHBA:10344 +xref: DMBA:15830 +xref: EMAPA:37639 {source="MA:th"} +xref: FMA:61840 +xref: HBA:12898 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=233 {source="BIRNLEX:1555"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=233 +xref: http://en.wikipedia.org/wiki/Medial_globus_pallidus +xref: http://linkedlifedata.com/resource/umls/id/C0262283 +xref: http://www.snomedbrowser.com/Codes/Details/361562000 +xref: MA:0002768 +xref: MBA:1031 +xref: PBA:10098 +xref: UMLS:C0262283 {source="BIRNLEX:1555"} +is_a: UBERON:0005401 ! cerebral hemisphere gray matter +relationship: part_of UBERON:0001875 {source="MA"} ! globus pallidus + +[Term] +id: UBERON:0002478 +name: orbitosphenoid +def: "the bone that is situated in the orbit on either side of the presphenoid; it generally forms a part of the sphenoid in the adult, and may be independent in the young" [ISBN:0-683-40008-8, MP:0004457] +subset: pheno_slim +subset: vertebrate_core +synonym: "ala minor (os sphenoidale)" EXACT [FMA:52869] +synonym: "ala minor ossis sphenoidalis" EXACT LATIN [FMA:52869, FMA:TA] +synonym: "alae parvae" RELATED LATIN [http://en.wikipedia.org/wiki/Lesser_wing_of_sphenoid_bone] +synonym: "conchosphénocïde@fr" EXACT [TAO:0000253] +synonym: "ingrassia's process" EXACT [FMA:52869] +synonym: "lesser wing of sphenoid" EXACT [FMA:52869] +synonym: "lesser wing of sphenoid bone" RELATED [MA:0002773] +synonym: "lesser wing of sphenoidal bone" EXACT [FMA:52869] +synonym: "orbito-sphénocïde@fr" EXACT [TAO:0000253] +synonym: "orbitosphenoid bone" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "orbitosphenoids" RELATED PLURAL [ZFA:0000253] +xref: AAO:0000345 +xref: EMAPA:18719 +xref: FMA:52869 +xref: http://en.wikipedia.org/wiki/Lesser_wing_of_sphenoid_bone +xref: http://www.snomedbrowser.com/Codes/Details/361737003 +xref: MA:0002773 +xref: TAO:0000253 +xref: VHOG:0001153 +xref: ZFA:0000253 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:0015059 ! orbitosphenoid endochondral element +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0015059 ! orbitosphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: contributes_to_morphology_of UBERON:0001677 ! sphenoid bone +relationship: develops_from UBERON:0005687 ! orbitosphenoid cartilage element +relationship: develops_from UBERON:0009638 ! orbitosphenoid ossification center +relationship: in_lateral_side_of UBERON:0002517 {source="FMA-abduced-lr"} ! basicranium +relationship: part_of UBERON:0001677 ! sphenoid bone + +[Term] +id: UBERON:0002479 +name: dorsal lateral geniculate nucleus +def: "The main division of the lateral geniculate body; consists of two magnocellular layers [TA] (strata magnocellularia [TA]) and four parvocellular layers [TA] (strata parvocellularia [TA]) and serves as a processing station in the major pathway from the retina to the cerebral cortex, receiving fibers from the optic tract and giving rise to the geniculocalcarine radiation to the visual cortex in the occipital lobe." [http://www.medilexicon.com/medicaldictionary.php?t=61422] +synonym: "corpus geniculatum laterale (Hassler)" RELATED LATIN [NeuroNames:353] +synonym: "DLG" BROAD ABBREVIATION [BIRNLEX:1595, NIFSTD:NeuroNames_abbrevSource] +synonym: "dorsal nucleus of lateral geniculate body" RELATED [MA:0002775] +synonym: "dorsal part of the lateral geniculate complex" RELATED [NeuroNames:353] +synonym: "lateral geniculate complex, dorsal part" EXACT [] +synonym: "lateral geniculate nucleus dorsal part" RELATED [BAMS:LGd] +synonym: "lateral geniculate nucleus, dorsal part" EXACT [NeuroNames:353] +synonym: "nucleus corporis geniculati lateralis, pars dorsalis" RELATED LATIN [NeuroNames:353] +synonym: "nucleus dorsalis corporis geniculati lateralis" EXACT LATIN [FMA:62214, FMA:TA] +synonym: "nucleus geniculatus lateralis dorsalis" RELATED LATIN [NeuroNames:353] +synonym: "nucleus geniculatus lateralis pars dorsalis" EXACT [BIRNLEX:1595] +xref: BAMS:DLG +xref: BAMS:LGd +xref: BIRNLEX:1595 +xref: BM:GLd +xref: DHBA:10430 +xref: DMBA:16436 +xref: EMAPA:35290 +xref: FMA:62214 +xref: HBA:4440 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=353 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=353 {source="BIRNLEX:1595"} +xref: http://linkedlifedata.com/resource/umls/id/C0175292 +xref: MA:0002775 +xref: MBA:170 +xref: PBA:128013074 +xref: UMLS:C0175292 {source="BIRNLEX:1595"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +disjoint_from: UBERON:0002758 {source="lexical"} ! dorsal nucleus of medial geniculate body +relationship: part_of UBERON:0001926 ! lateral geniculate body +relationship: part_of UBERON:0002104 {source="NIFSTD"} ! visual system + +[Term] +id: UBERON:0002480 +name: ventral lateral geniculate nucleus +synonym: "corpus geniculatum externum, nucleus accessorius" EXACT [BIRNLEX:1597] +synonym: "corpus geniculatum laterale, pars oralis" EXACT [BIRNLEX:1597] +synonym: "DLG" BROAD ABBREVIATION [BIRNLEX:1597, NIFSTD:NeuroNames_abbrevSource] +synonym: "dorsal_nucleus_of_lateral_geniculate_body" EXACT [BIRNLEX:1597] +synonym: "griseum praegeniculatum" EXACT [BIRNLEX:1597] +synonym: "lateral geniculate complex, ventral part" EXACT [] +synonym: "lateral geniculate complex, ventral part (kolliker)" EXACT [BIRNLEX:1597] +synonym: "lateral geniculate complex, ventral part (Kvlliker)" RELATED [NeuroNames:354] +synonym: "lateral geniculate nucleus ventral part" RELATED [BAMS:LGv] +synonym: "lateral geniculate nucleus, ventral part" EXACT [BIRNLEX:1597] +synonym: "nucleus corporis geniculati lateralis, pars ventralis" EXACT [BIRNLEX:1597] +synonym: "nucleus geniculatus lateralis pars ventralis" RELATED LATIN [NeuroNames:354] +synonym: "nucleus praegeniculatus" EXACT [BIRNLEX:1597] +synonym: "nucleus pregeniculatum" EXACT [BIRNLEX:1597] +synonym: "nucleus pregeniculatus" EXACT LATIN [FMA:62215, FMA:TA] +synonym: "nucleus ventralis corporis geniculati lateralis" EXACT LATIN [FMA:62215, FMA:TA] +synonym: "praegeniculatum" EXACT [BIRNLEX:1597] +synonym: "pregeniculate nucleus" EXACT [] +synonym: "ventral nucleus of lateral geniculate body" RELATED [MA:0002776] +synonym: "ventral part of the lateral geniculate complex" EXACT [BIRNLEX:1597] +xref: BAMS:DLG +xref: BAMS:LGV +xref: BAMS:LGv +xref: BAMS:PGn +xref: BAMS:VLG +xref: BIRNLEX:1597 +xref: BM:LGv +xref: DHBA:13042 +xref: DMBA:16341 +xref: EMAPA:35908 +xref: FMA:62215 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=354 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=354 {source="BIRNLEX:1597"} +xref: http://linkedlifedata.com/resource/umls/id/C0175293 +xref: MA:0002776 +xref: MBA:178 +xref: UMLS:C0175293 {source="BIRNLEX:1597"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +disjoint_from: UBERON:0002985 {source="lexical"} ! ventral nucleus of medial geniculate body +relationship: part_of UBERON:0001926 ! lateral geniculate body + +[Term] +id: UBERON:0002481 +name: bone tissue +def: "Skeletal tissue with a collagen-rich extracellular matrix vascularized, mineralized with hydroxyapatite and typically including osteocytes located in lacunae that communicate with one another by cell processes (in canaliculi). Bone is deposited by osteoblasts." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000047] +subset: pheno_slim +subset: uberon_slim +synonym: "bone" RELATED [MESH:A02.835.232] +synonym: "calcium tissue" EXACT [] +synonym: "mineralized bone tissue" NARROW [XAO:0004040] +synonym: "osseous tissue" EXACT [] +synonym: "osteogenic tissue" EXACT [VSAO:curator] +synonym: "portion of bone tissue" RELATED [FMA:224804] +xref: Bone:tissue +xref: CALOHA:TS-2011 +xref: EMAPA:35179 +xref: FMA:224804 +xref: galen:BoneTissue +xref: http://linkedlifedata.com/resource/umls/id/C0391978 +xref: MA:0002780 +xref: MESH:D001842 +xref: NCIT:C13076 +xref: UMLS:C0391978 {source="ncithesaurus:Bone_Tissue"} +xref: VSAO:0000047 +xref: XAO:0004040 +xref: ZFA:0005621 +is_a: UBERON:0004755 {source="VSAO"} ! skeletal tissue +disjoint_from: UBERON:0005090 ! muscle structure +relationship: part_of UBERON:0001474 ! bone element + +[Term] +id: UBERON:0002482 +name: lamellar bone +def: "Bone tissue that has a regular parallel alignment of collagen into sheets (lamellae) and is mechanically strong." [http://en.wikipedia.org/wiki/Bone#Woven_or_lamellar] +comment: histological classification, lamellar vs woven. Note that only FMA has woven +xref: EMAPA:37625 {source="MA:th"} +xref: FMA:224806 +xref: galen:LamellarBone +xref: MA:0002781 +xref: Woven_or_lamellar +is_a: UBERON:0002481 ! bone tissue + +[Term] +id: UBERON:0002483 +name: trabecular bone tissue +def: "bone tissue that has a lattice-like or spongy structure; it is highly vascular and contains intercommunicating spaces filled with bone marrow" [ISBN:0-683-40008-8, MGI:csmith, MP:0000130] +comment: one of the two types of osseous tissue that form bones. Compared to compact bone, which is the other type of osseous tissue, it has a higher surface area but is less dense, softer, weaker, and less stiff. It typically occurs at the ends of long bones, proximal to joints and within the interior of vertebrae. Cancellous bone is highly vascular and frequently contains red bone marrow where hematopoiesis, which is the production of blood cells, occurs. The primary anatomical and functional unit of cancellous bone is the trabecula. +subset: pheno_slim +subset: uberon_slim +synonym: "cancellated bone" RELATED [BTO:0001700] +synonym: "cancellous bone" EXACT [FMA:24019, MA:0002782] +synonym: "cancellous bone tissue" EXACT [] +synonym: "spongy bone" EXACT [] +synonym: "spongy bone tissue" EXACT [] +synonym: "substantia spongiosa" EXACT [http://en.wikipedia.org/wiki/Trabecular_bone] +synonym: "substantia spongiosa ossium" EXACT [http://en.wikipedia.org/wiki/Trabecular_bone] +synonym: "substantia trabecularis" EXACT LATIN [FMA:24019, FMA:TA] +synonym: "substantia trabecularis ossium" RELATED [BTO:0001700] +synonym: "trabecular bone" EXACT [] +synonym: "trabecular substance" RELATED [BTO:0001700] +xref: BTO:0001700 +xref: CALOHA:TS-0110 +xref: EMAPA:35873 +xref: FMA:24019 +xref: MA:0002782 +xref: Trabecular:bone +is_a: UBERON:0002481 ! bone tissue +intersection_of: UBERON:0002481 ! bone tissue +intersection_of: has_part UBERON:0008867 ! trabecular network of bone +relationship: has_part UBERON:0008867 ! trabecular network of bone +relationship: part_of UBERON:0002482 ! lamellar bone + +[Term] +id: UBERON:0002484 +name: bone marrow cavity +def: "the medullary cavities of the bones where bone marrow is stored" [http://www.ncbi.nlm.nih.gov/pubmed/10709991, ISBN:0-683-40008-8, MP:0000065] +subset: pheno_slim +synonym: "cavity of cancellous bone" EXACT [] +synonym: "marrow cavity" EXACT [FMA:83698] +synonym: "medullary cavity" EXACT [FMA:83698] +xref: FMA:75147 +xref: FMA:83698 +xref: http://en.wikipedia.org/wiki/Bone_marrow_of_ovaryry_cavity +xref: MA:0002783 +is_a: UBERON:0002553 ! anatomical cavity +relationship: dubious_for_taxon NCBITaxon:7955 {source="https://doi.org/10.1177/0192623311409597"} +relationship: part_of UBERON:0001439 ! compact bone tissue +relationship: surrounds UBERON:0002371 ! bone marrow + +[Term] +id: UBERON:0002485 +name: prostate duct +def: "The minute canals that pass the prostatic secretions to the urethra." [MP:0009734] +subset: pheno_slim +synonym: "duct of prostate" EXACT [] +synonym: "duct of prostate gland" EXACT [] +synonym: "prostate duct" EXACT [] +synonym: "prostate gland duct" EXACT [] +synonym: "prostatic duct" EXACT [] +xref: EMAPA:36568 +xref: FMA:19580 +xref: http://linkedlifedata.com/resource/umls/id/C0227965 +xref: http://www.snomedbrowser.com/Codes/Details/362276000 +xref: MA:0002785 +xref: NCIT:C13102 +xref: Prostatic:ducts +xref: UMLS:C0227965 {source="ncithesaurus:Prostatic_Duct"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0005904 ! duct of male reproductive system +intersection_of: UBERON:0000058 ! duct +intersection_of: part_of UBERON:0002367 ! prostate gland +relationship: contributes_to_morphology_of UBERON:0002367 ! prostate gland +relationship: develops_from UBERON:0003820 {source="http://www.ncbi.nlm.nih.gov/pubmed/18977204"} ! prostate bud +relationship: part_of UBERON:0002367 ! prostate gland + +[Term] +id: UBERON:0002486 +name: glottis +def: "the vocal apparatus of the larynx, which includes the vocal cords and the opening between them" [ISBN:0-397-51047-0, MGI:cwg, MP:0002255] +subset: pheno_slim +subset: uberon_slim +xref: AAO:0010610 +xref: BTO:0001627 +xref: FMA:55414 +xref: GAID:343 +xref: http://en.wikipedia.org/wiki/Glottis +xref: http://linkedlifedata.com/resource/umls/id/C0017681 +xref: http://www.snomedbrowser.com/Codes/Details/264482000 +xref: MA:0002788 +xref: MESH:D005931 +xref: NCIT:C12724 +xref: UMLS:C0017681 {source="ncithesaurus:Glottis"} +is_a: UBERON:0000477 ! anatomical cluster +relationship: contributes_to_morphology_of UBERON:0001737 ! larynx +relationship: part_of UBERON:0001737 ! larynx + +[Term] +id: UBERON:0002487 +name: tooth cavity +def: "the central hollow space of a tooth" [ISBN:0-683-40008-8, MP:0002819] +subset: pheno_slim +subset: uberon_slim +synonym: "cavitas dentis" EXACT [] +synonym: "cavitas pulparis" EXACT LATIN [FMA:55660, FMA:TA] +synonym: "cavity of tooth" RELATED [MA:0002792] +synonym: "lumen of tooth" EXACT [] +synonym: "pulp cavity" EXACT [] +synonym: "pulp cavity of tooth" EXACT [] +synonym: "tooth pulp cavity" RELATED [MA:0002792] +xref: FMA:55660 +xref: http://www.snomedbrowser.com/Codes/Details/362105008 +xref: MA:0002792 +xref: MESH:A14.254.900.265 +xref: Tooth:cavity +is_a: UBERON:0002558 ! organ cavity +relationship: contributes_to_morphology_of UBERON:0001091 ! calcareous tooth +relationship: part_of UBERON:0001091 ! calcareous tooth + +[Term] +id: UBERON:0002488 +name: helix of outer ear +def: "The helix is the prominent rim of the pinna." [http://en.wikipedia.org/wiki/Helix] +subset: pheno_slim +subset: uberon_slim +synonym: "helical part of pinna" EXACT [] +synonym: "helix" EXACT [MA:0002793] +synonym: "helix (auricula)" EXACT [] +synonym: "helix of auricle of ear" EXACT [] +synonym: "helix of ear" EXACT [] +synonym: "helix of pinna" EXACT [] +xref: FMA:60992 +xref: Helix:(ear) +xref: http://linkedlifedata.com/resource/umls/id/C0229304 +xref: http://www.snomedbrowser.com/Codes/Details/279607004 +xref: MA:0002793 +xref: NCIT:C32724 +xref: OpenCyc:Mx4rwRDEk5wpEbGdrcN5Y29ycA +xref: UMLS:C0229304 {source="ncithesaurus:Helix"} +is_a: UBERON:0001444 ! subdivision of head +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0016611 {source="Wikipedia-uncited"} ! auditory hillocks, pharyngeal arch 1 derived +relationship: part_of UBERON:0001757 ! pinna + +[Term] +id: UBERON:0002489 +name: coronal suture +def: "the dense, fibrous connective tissue joint between the tetrapod parietal bones and the frontal bone" [ISBN:0-8036-0655-9, MGI:smb, MP:0003840] +subset: pheno_slim +subset: uberon_slim +synonym: "coronal suture of skull" EXACT [] +synonym: "fronto-parietal suture" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/11784098] +synonym: "frontoparietal suture" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/11784098] +synonym: "sutura coronalis" RELATED LATIN [http://en.wikipedia.org/wiki/Coronal_suture] +xref: Coronal:suture +xref: EMAPA:19225 +xref: FMA:52928 +xref: http://www.snomedbrowser.com/Codes/Details/244510008 +xref: MA:0002795 +xref: OpenCyc:Mx4rv2eGHZwpEbGdrcN5Y29ycA +is_a: UBERON:0003685 ! cranial suture +intersection_of: UBERON:0003685 ! cranial suture +intersection_of: connects UBERON:0000209 ! tetrapod frontal bone +intersection_of: connects UBERON:0000210 ! tetrapod parietal bone +relationship: connects UBERON:0000209 ! tetrapod frontal bone +relationship: connects UBERON:0000210 ! tetrapod parietal bone +relationship: part_of UBERON:0004339 ! vault of skull + +[Term] +id: UBERON:0002490 +name: frontal suture +def: "A suture that connects the two frontal bones of the skull." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "frontal suture of skull" EXACT [] +synonym: "median frontal suture" EXACT [] +synonym: "metopic suture" RELATED [MA:0002796] +synonym: "sutura frontalis" EXACT [http://en.wikipedia.org/wiki/Frontal_suture] +synonym: "sutura frontalis" RELATED LATIN [http://en.wikipedia.org/wiki/Frontal_suture] +synonym: "sutura metopica" EXACT LATIN [FMA:52989, FMA:TA] +xref: EMAPA:19226 +xref: EMAPA:35358 +xref: FMA:52989 +xref: Frontal:suture +xref: http://www.snomedbrowser.com/Codes/Details/136854008 +xref: MA:0002796 +is_a: UBERON:0003685 ! cranial suture +intersection_of: UBERON:0003685 ! cranial suture +intersection_of: connects UBERON:0000209 {minCardinality="2", maxCardinality="2"} ! tetrapod frontal bone +relationship: connects UBERON:0000209 {notes="two halves of the frontal bone"} ! tetrapod frontal bone + +[Term] +id: UBERON:0002491 +name: lambdoid suture +def: "the dense, fibrous connective tissue joint between the parietal bones and the occipital bone" [ISBN:0-8036-0655-9, MGI:smb, MP:0003841] +subset: pheno_slim +subset: uberon_slim +synonym: "lambdoid suture of skull" EXACT [] +synonym: "lambdoidal suture" RELATED [MA:0002797] +synonym: "sutura lambdoidea" RELATED [http://en.wikipedia.org/wiki/Lambdoid_suture] +synonym: "sutura lambdoidea" RELATED LATIN [http://en.wikipedia.org/wiki/Lambdoid_suture] +xref: EMAPA:19227 +xref: FMA:52933 +xref: http://www.snomedbrowser.com/Codes/Details/361830007 +xref: Lambdoid:suture +xref: MA:0002797 +is_a: UBERON:0003685 ! cranial suture +intersection_of: UBERON:0003685 ! cranial suture +intersection_of: connects UBERON:0000210 ! tetrapod parietal bone +intersection_of: connects UBERON:0001676 ! occipital bone +intersection_of: connects UBERON:0001678 ! temporal bone +relationship: connects UBERON:0000210 ! tetrapod parietal bone +relationship: connects UBERON:0001676 ! occipital bone +relationship: connects UBERON:0001678 ! temporal bone +relationship: part_of UBERON:0004339 {source="HP"} ! vault of skull + +[Term] +id: UBERON:0002492 +name: sagittal suture +def: "the dense, fibrous connective tissue joint between the tetrapod parietal bones" [ISBN:0-8036-0655-9, MGI:smb, MP:0003843] +subset: pheno_slim +subset: uberon_slim +synonym: "sagittal suture of skull" EXACT [] +synonym: "sutura sagittalis" RELATED LATIN [http://en.wikipedia.org/wiki/Sagittal_suture] +xref: EMAPA:19224 +xref: FMA:52929 +xref: http://www.snomedbrowser.com/Codes/Details/244511007 +xref: MA:0002798 +xref: Sagittal:suture +is_a: UBERON:0003685 ! cranial suture +intersection_of: UBERON:0003685 ! cranial suture +intersection_of: connects UBERON:0000210 {minCardinality="2", maxCardinality="2"} ! tetrapod parietal bone +relationship: connects UBERON:0000210 {notes="both parietals"} ! tetrapod parietal bone +relationship: part_of UBERON:0004339 ! vault of skull + +[Term] +id: UBERON:0002493 +name: uterine artery +def: "the branch of the internal iliac artery that supplies the uterus and the upper part of the vagina" [MGI:monikat, MP:0003995] +subset: pheno_slim +subset: uberon_slim +synonym: "arteria uterina" RELATED LATIN [http://en.wikipedia.org/wiki/Uterine_artery] +xref: FMA:18829 +xref: http://www.snomedbrowser.com/Codes/Details/244300003 +xref: MA:0002799 +xref: Uterine:artery +is_a: UBERON:0001190 ! ovarian artery +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0010192 ! genital artery +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0000992 ! ovary +intersection_of: supplies UBERON:0000995 ! uterus +intersection_of: supplies UBERON:0003974 ! upper part of vagina +relationship: branching_part_of UBERON:0001309 ! internal iliac artery +relationship: contributes_to_morphology_of UBERON:0000995 ! uterus +relationship: in_lateral_side_of UBERON:0000995 {source="FMA-abduced-lr"} ! uterus +relationship: part_of UBERON:0000995 ! uterus +relationship: part_of UBERON:0001309 ! internal iliac artery +relationship: supplies UBERON:0000995 ! uterus +relationship: supplies UBERON:0003974 ! upper part of vagina + +[Term] +id: UBERON:0002494 +name: papillary muscle of heart +def: "one of the group of myocardial bundles which terminate in the chordae tendineae that attach to the cusps of the atrioventricular valves; each ventricle has an anterior and a posterior papillary muscle; the right ventricle sometimes has a septal papillary muscle" [MGI:anna, MP:0004058] +subset: pheno_slim +subset: uberon_slim +synonym: "musculus papillaris" RELATED LATIN [http://en.wikipedia.org/wiki/Papillary_muscle] +synonym: "papillary muscle" EXACT [MA:0002800] +synonym: "papillary muscle of ventricle" EXACT [MA:0002800] +synonym: "ventricular papillary muscle" EXACT [MA:0002800] +synonym: "ventricule papillary muscle" EXACT [] +xref: EHDAA:8655 +xref: FMA:12154 +xref: GAID:175 +xref: galen:PapillaryMuscle +xref: http://linkedlifedata.com/resource/umls/id/C0030352 +xref: http://www.snomedbrowser.com/Codes/Details/279329009 +xref: MA:0002800 +xref: MESH:D010210 +xref: NCIT:C33259 +xref: OpenCyc:Mx4rDid0jLYYEduAAAACs2IKfQ +xref: Papillary:muscle +xref: UMLS:C0030352 {source="ncithesaurus:Papillary_Muscle"} +xref: VHOG:0001392 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0002082 ! cardiac ventricle + +[Term] +id: UBERON:0002495 +name: long bone +def: "Long bone is a limb bone that is subcylindrical and has a shaft with periosteum separating the ends of the bones. Long bones are present only in the limbs[VSAO:wd]." [http://en.wikipedia.org/wiki/Long_bone, https://github.com/obophenotype/uberon/issues/32, VSAO:wd] +comment: Endochondral_ossification is an essential process during the rudimentary formation of long bones, with the exception of the clavicle[Wikipedia:Endochondral_ossification]. The medial and and lateral ends undergo EO, the mid-portion is formed by a process with features of EO & IO (the process is shared by the mandible)[ISBN:9780397517251] +subset: pheno_slim +subset: uberon_slim +synonym: "os longum" RELATED [BTO:0004256] +xref: BTO:0004256 +xref: EMAPA:35503 +xref: FMA:7474 +xref: galen:LongBone +xref: http://linkedlifedata.com/resource/umls/id/C0222647 +xref: http://www.snomedbrowser.com/Codes/Details/332709000 +xref: Long:bone +xref: MA:0002802 +xref: NCIT:C33003 +xref: OpenCyc:Mx4rv6axr5wpEbGdrcN5Y29ycA +xref: UMLS:C0222647 {source="ncithesaurus:Long_Bone"} +is_a: UBERON:0001474 ! bone element +relationship: contributes_to_morphology_of UBERON:0002091 ! appendicular skeleton +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/wdahdul +relationship: part_of UBERON:0002091 ! appendicular skeleton + +[Term] +id: UBERON:0002496 +name: stapes base +def: "The flat portion of the stirrup of the ear that fits in the oval window between the middle and inner ear." [http://medical-dictionary.thefreedictionary.com/base+of+stapes] +subset: pheno_slim +subset: uberon_slim +synonym: "base of stapes" EXACT [MA:0002804] +synonym: "basis stapedis" EXACT LATIN [] +synonym: "footplate" RELATED INCONSISTENT [FMA:52769] +synonym: "stapes footpiece" EXACT [] +synonym: "stapes footplate" EXACT [MA:0002804] +xref: FMA:52769 +xref: http://www.snomedbrowser.com/Codes/Details/279685009 +xref: MA:0002804 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: contributes_to_morphology_of UBERON:0001687 ! stapes bone +relationship: part_of UBERON:0001687 {source="MA"} ! stapes bone + +[Term] +id: UBERON:0002497 +name: acromion +def: "Region of the scapula where the latter meets with the clavicle: attachment point of the clavicle to the scapula in some taxa." [VSAO:0005067] +subset: pheno_slim +subset: uberon_slim +synonym: "acromion of scapula" RELATED [http://en.wikipedia.org/wiki/Acromion] +synonym: "acromion of the scapula" RELATED [http://en.wikipedia.org/wiki/Acromion] +synonym: "acromion process" EXACT [VSAO:0005067] +synonym: "scapular acromion" EXACT [VSAO:0005067] +xref: AAO:0000826 +xref: EMAPA:25119 +xref: FMA:23260 +xref: GAID:187 +xref: http://en.wikipedia.org/wiki/Acromion +xref: http://linkedlifedata.com/resource/umls/id/C0001209 +xref: http://www.snomedbrowser.com/Codes/Details/181911000 +xref: MA:0002805 +xref: MESH:D000174 +xref: NCIT:C32048 +xref: OpenCyc:Mx4rvmrF8pwpEbGdrcN5Y29ycA +xref: UMLS:C0001209 {source="ncithesaurus:Acromion"} +xref: VSAO:0005067 +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0006849 ! scapula + +[Term] +id: UBERON:0002498 +name: deltopectoral crest +def: "a rough elevation at the middle of the lateral side of the shaft of the humerus to which the deltoid muscle attaches" [ISBN:0-683-40008-8, MP:0004353] +subset: pheno_slim +subset: uberon_slim +synonym: "crista ventralis" EXACT [AAO:0000736] +synonym: "crista ventralis humeri" RELATED [AAO:0000736] +synonym: "deltoid crest" EXACT [AAO:0000736, MP:0004353] +synonym: "deltoid eminence" EXACT [MP:0004353] +synonym: "deltoid impression" EXACT [MP:0004353] +synonym: "deltoid process" RELATED [MP:0004353] +synonym: "deltoid tuberosity" EXACT [FMA:23418] +synonym: "deltoid tuberosity of humerus" EXACT [FMA:23418] +synonym: "pectoral process" RELATED [] +synonym: "tuberositas deltoidea" EXACT LATIN [FMA:23418, FMA:TA] +synonym: "tuberositas deltoidea (corpus humeri)" EXACT [] +synonym: "tuberositas deltoidea humeri" EXACT LATIN [http://en.wikipedia.org/wiki/Deltoid_tuberosity] +xref: AAO:0000736 +xref: Deltoid:tuberosity +xref: EMAPA:25052 +xref: FMA:23418 +xref: MA:0002808 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005813 ! tubercle +is_a: UBERON:4100000 ! skeletal element projection +relationship: contributes_to_morphology_of UBERON:0000976 ! humerus +relationship: part_of UBERON:0004652 ! humerus diaphysis + +[Term] +id: UBERON:0002499 +name: cochlear labyrinth +def: "The labyrinth is a system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. It is named by analogy with the mythical maze that imprisoned the Minotaur, because of its appearance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]." [http://en.wikipedia.org/wiki/Cochlear_labyrinth] +subset: pheno_slim +subset: uberon_slim +xref: BTO:0004686 +xref: Cochlear:labyrinth +xref: EMAPA:36569 +xref: FMA:61259 +xref: http://linkedlifedata.com/resource/umls/id/C0931689 +xref: MA:0002809 +xref: NCIT:C32336 +xref: UMLS:C0931689 {source="ncithesaurus:Cochlear_Labyrinth"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: located_in UBERON:0001844 ! cochlea +relationship: part_of UBERON:0001849 {source="FMA"} ! membranous labyrinth + +[Term] +id: UBERON:0002500 +name: zygomatic arch +def: "the bony arch in vertebrates that extends along the side or front of the skull beneath the eye socket and is formed by the temporal process of the zygomatic bone and the zygomatic process of the temporal bone" [ISBN:0-683-40008-8, MP:0004469] +subset: pheno_slim +subset: uberon_slim +synonym: "arcus zygomaticus" RELATED LATIN [http://en.wikipedia.org/wiki/Zygomatic_arch] +synonym: "zygoma" EXACT [] +xref: EMAPA:36570 +xref: FMA:53120 +xref: galen:Zygoma +xref: http://linkedlifedata.com/resource/umls/id/C0162485 +xref: http://www.snomedbrowser.com/Codes/Details/272682006 +xref: MA:0002810 +xref: MESH:D015050 +xref: MFMO:0000108 +xref: NCIT:C33897 +xref: OpenCyc:Mx4rvih1YZwpEbGdrcN5Y29ycA +xref: UMLS:C0162485 {source="ncithesaurus:Zygomatic_Arch"} +xref: Zygomatic:arch +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0011164 {source="MA"} ! neurocranium bone +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0011156 {source="FMA-abduced-lr"} ! facial skeleton + +[Term] +id: UBERON:0002501 +name: oval window +def: "the oval opening on the medial wall of the tympanic cavity leading into the vestibule, close to the foot of the stapes" [ISBN:0-683-40008-8, MP:0004479] +subset: pheno_slim +subset: uberon_slim +synonym: "fenestra ovalis" RELATED LATIN [http://en.wikipedia.org/wiki/Oval_window] +synonym: "fenestra vestibuli" RELATED LATIN [http://en.wikipedia.org/wiki/Oval_window] +synonym: "oval window of petrous part of temporal bone" EXACT [] +synonym: "vestibular window" RELATED [MA:0002813] +xref: EMAPA:19240 +xref: FMA:56913 +xref: GAID:882 +xref: http://www.snomedbrowser.com/Codes/Details/362561009 +xref: MA:0002813 +xref: MESH:D010046 +xref: NCIT:C32593 +xref: Oval:window +is_a: UBERON:0013685 ! foramen of skull +is_a: UBERON:0036253 ! orifice of skull +relationship: part_of UBERON:0001694 ! petrous part of temporal bone + +[Term] +id: UBERON:0002502 +name: round window of inner ear +def: "the opening on the medial wall of the middle ear leading into the cochlea, closed in life by the secondary tympanic membrane; serves to regulate fluid pressure in the inner ear" [ISBN:0-683-40008-8, MP:0004480] +subset: pheno_slim +subset: uberon_slim +synonym: "cochlear window" RELATED [MA:0002814] +synonym: "fenestra cochleae" RELATED LATIN [http://en.wikipedia.org/wiki/Round_window] +synonym: "fenestra rotunda" RELATED LATIN [http://en.wikipedia.org/wiki/Round_window] +synonym: "round window" EXACT [MA:0002814] +synonym: "round window of petrous part of temporal bone" EXACT [] +xref: EMAPA:19239 +xref: FMA:56932 +xref: GAID:878 +xref: http://www.snomedbrowser.com/Codes/Details/279785002 +xref: MA:0002814 +xref: MESH:D012405 +xref: NCIT:C32594 +xref: Round:window +is_a: UBERON:0013685 ! foramen of skull +is_a: UBERON:0036253 ! orifice of skull +relationship: part_of UBERON:0001694 ! petrous part of temporal bone + +[Term] +id: UBERON:0002503 +name: greater trochanter +def: "The greater trochanter (great trochanter) of the femur is a large, irregular, quadrilateral eminence and a part of the skeletal system. It is directed a little lateralward and backward, and, in the adult, is about 1 cm lower than the head. Because the pelvic outlet in the female is larger than in the male, there is a greater distance between the greater trochanters in the female. It has two surfaces and four borders. [WP,unvetted]." [http://en.wikipedia.org/wiki/Greater_trochanter] +subset: uberon_slim +synonym: "great trochanter" EXACT [] +synonym: "greater trochanter of femur" EXACT [] +synonym: "trochanter major" RELATED LATIN [http://en.wikipedia.org/wiki/Greater_trochanter] +xref: EMAPA:37594 {source="MA:th"} +xref: FMA:32852 +xref: galen:GreaterTrochanter +xref: Greater:trochanter +xref: http://linkedlifedata.com/resource/umls/id/C0223865 +xref: http://www.snomedbrowser.com/Codes/Details/182050001 +xref: MA:0002822 +xref: NCIT:C32698 +xref: UMLS:C0223865 {source="ncithesaurus:Great_Trochanter"} +is_a: UBERON:0000980 ! trochanter +relationship: part_of UBERON:0004412 {source="FMA"} ! proximal epiphysis of femur + +[Term] +id: UBERON:0002504 +name: lesser trochanter +def: "The lesser trochanter (small trochanter) of the femur is a conical eminence, which varies in size in different subjects [WP,unvetted]." [http://en.wikipedia.org/wiki/Lesser_trochanter] +subset: pheno_slim +subset: uberon_slim +synonym: "lesser trochanter of femur" EXACT [] +synonym: "trochanter minor" RELATED LATIN [http://en.wikipedia.org/wiki/Lesser_trochanter] +xref: EMAPA:37595 {source="MA:th"} +xref: FMA:32853 +xref: galen:LesserTrochanter +xref: http://linkedlifedata.com/resource/umls/id/C0223866 +xref: http://www.snomedbrowser.com/Codes/Details/182051002 +xref: Lesser:trochanter +xref: MA:0002823 +xref: NCIT:C32982 +xref: UMLS:C0223866 {source="ncithesaurus:Lesser_Trochanter"} +is_a: UBERON:0000980 ! trochanter +relationship: part_of UBERON:0004412 {source="FMA"} ! proximal epiphysis of femur + +[Term] +id: UBERON:0002505 +name: spiral modiolar artery +def: "The artery which parallels the spiral ganglion in the root of the spiral lamina of the modiolus, serving the ganglion and the cochlear duct and its contents." [MP:0004629] +subset: pheno_slim +xref: FMA:52312 +xref: http://www.snomedbrowser.com/Codes/Details/149380004 +xref: MA:0002824 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: branching_part_of UBERON:0018231 ! labyrinthine artery +relationship: located_in UBERON:0006723 ! cochlear modiolus +relationship: part_of UBERON:0018231 ! labyrinthine artery + +[Term] +id: UBERON:0002506 +name: iris epithelium +def: "An epithelium that is part of a iris [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "epithelial tissue of iris" EXACT [OBOL:automatic] +synonym: "epithelium of iris" EXACT [OBOL:automatic] +synonym: "epithelium pigmentosum (iris)" EXACT [FMA:58517] +synonym: "epithelium pigmentosum iridis" EXACT LATIN [FMA:58517, FMA:TA] +synonym: "iris epithelial tissue" EXACT [OBOL:automatic] +synonym: "iris epithelium" EXACT [FMA:58517] +synonym: "iris pigmented epithelium" RELATED [MA:0002826] +synonym: "pigmented epithelium of iris" EXACT [FMA:58517] +xref: EMAPA:35447 +xref: FMA:58517 +xref: MA:0002826 +is_a: UBERON:0000488 {source="FMA"} ! atypical epithelium +is_a: UBERON:0015808 ! eye epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001769 ! iris +relationship: contributes_to_morphology_of UBERON:0001769 ! iris +relationship: part_of UBERON:0001769 {source="MA"} ! iris + +[Term] +id: UBERON:0002507 +name: abdominal lymph node +def: "A lymph node that is part of an abdomen [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "abdomen lymph node" EXACT [OBOL:automatic] +synonym: "lymph node of abdomen" EXACT [] +synonym: "parietal abdominal lymph node" RELATED [FMA:12787] +xref: EMAPA:35992 +xref: FMA:12787 +xref: http://www.snomedbrowser.com/Codes/Details/245342005 +xref: MA:0002827 +is_a: UBERON:0000029 ! lymph node +is_a: UBERON:0005172 ! abdomen element +intersection_of: UBERON:0000029 ! lymph node +intersection_of: part_of UBERON:0000916 ! abdomen + +[Term] +id: UBERON:0002508 +name: celiac lymph node +def: "the visceral glands that are associated with the branches of the celiac artery, including the gastric, hepatic, and pancreaticolienal (splenic) lymph nodes" [MGI:csmith, MP:0009626] +subset: pheno_slim +subset: uberon_slim +synonym: "aJCC level 20 node" RELATED [FMA:12792] +synonym: "celiac node" EXACT [] +synonym: "coeliac lymph node" RELATED [FMA:12792] +synonym: "coeliac node" EXACT [] +synonym: "jPS 9 node" RELATED [FMA:12792] +synonym: "jPS no. 9 node" RELATED [FMA:12792] +synonym: "no. 9 celiac lymph node" RELATED [FMA:12792] +synonym: "nodus lymphaticus coeliacus" EXACT [] +synonym: "terminal ventral aortic node" EXACT [] +xref: FMA:12792 +xref: http://en.wikipedia.org/wiki/Celiac_lymph_node +xref: http://linkedlifedata.com/resource/umls/id/C0229766 +xref: http://www.snomedbrowser.com/Codes/Details/245343000 +xref: MA:0002828 +xref: NCIT:C65166 +xref: UMLS:C0229766 {source="ncithesaurus:Celiac_Lymph_Node"} +is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node + +[Term] +id: UBERON:0002509 +name: mesenteric lymph node +def: "The lymph nodes located in the mesentery, of which there are 3 classes: ileocolic, juxtaintestinal mesenteric, and central superior group." [MP:0005232] +subset: pheno_slim +synonym: "mesenteric node" EXACT [] +synonym: "nodi lymphoidei mesenterici" RELATED LATIN [BTO:0000767] +xref: BTO:0000767 +xref: EMAPA:35561 +xref: FMA:12795 +xref: http://en.wikipedia.org/wiki/Mesenteric_lymph_nodes +xref: http://linkedlifedata.com/resource/umls/id/C0229792 +xref: MA:0002829 +xref: NCIT:C77641 +xref: UMLS:C0229792 {source="ncithesaurus:Mesenteric_Lymph_Node"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node +intersection_of: UBERON:0002507 ! abdominal lymph node +intersection_of: part_of UBERON:0002095 ! mesentery +relationship: part_of UBERON:0002095 ! mesentery + +[Term] +id: UBERON:0002510 +name: anterior fontanel +def: "In humans, the anterior fontanelle (bregmatic fontanelle, frontal fontanelle) is the largest, and is placed at the junction of the sagittal suture, coronal suture, and frontal suture; it is lozenge-shaped, and measures about 4 cm in its antero-posterior and 2.5 cm in its transverse diameter. The fontanelle allows the skull to deform during birth to ease its passage through the birth canal and for expansion of the brain after birth. While the posterior and lateral fontanelles are obliterated by about six months after birth, the anterior is not completely closed until about the middle of the second year. Full ossification starts in the late twenties and finishes before the age of 50 . [WP,unvetted]." [http://en.wikipedia.org/wiki/Anterior_fontanelle] +subset: pheno_slim +synonym: "anterior fontanelle" EXACT [FMA:75439] +synonym: "bregmatic fontanelle" RELATED [http://en.wikipedia.org/wiki/Anterior_fontanelle] +synonym: "fonticulus anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_fontanelle] +synonym: "frontal fontanelle" RELATED [http://en.wikipedia.org/wiki/Anterior_fontanelle] +xref: Anterior:fontanelle +xref: EMAPA:19199 +xref: FMA:75439 +xref: http://www.snomedbrowser.com/Codes/Details/244680006 +xref: MA:0002830 +is_a: UBERON:0002221 ! fontanelle +intersection_of: UBERON:0002221 ! fontanelle +intersection_of: connects UBERON:0002489 ! coronal suture +intersection_of: connects UBERON:0002490 ! frontal suture +intersection_of: connects UBERON:0002492 ! sagittal suture +disjoint_from: UBERON:0006683 {source="lexical"} ! posterior fontanelle +relationship: connects UBERON:0002489 ! coronal suture +relationship: connects UBERON:0002490 ! frontal suture +relationship: connects UBERON:0002492 ! sagittal suture + +[Term] +id: UBERON:0002511 +name: trabecula carnea +def: "the supporting bundles of muscular fibers lining the walls of the ventricles of the heart" [MGI:monikat, MP:0004067] +subset: pheno_slim +synonym: "cardiac trabecula" RELATED [GO:0060347] +synonym: "columnae carneae" RELATED LATIN [http://en.wikipedia.org/wiki/Trabeculae_carneae] +synonym: "heart trabecula" RELATED [GO:0060347] +synonym: "trabecula of heart" RELATED [] +synonym: "trabeculae carneae" RELATED PLURAL [] +synonym: "trabeculae carneae cordis" RELATED LATIN [http://en.wikipedia.org/wiki/Trabeculae_carneae] +synonym: "ventricle trabecula carnea" EXACT [MA:0002831] +synonym: "ventricular trabecula" RELATED [MA:0002831] +xref: EMAPA:18626 +xref: FMA:7269 +xref: http://www.snomedbrowser.com/Codes/Details/118755002 +xref: MA:0002831 +xref: Trabeculae:carneae +is_a: UBERON:0000440 ! trabecula +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: composed_primarily_of UBERON:0001133 ! cardiac muscle tissue +relationship: part_of UBERON:0002082 {source="WP"} ! cardiac ventricle + +[Term] +id: UBERON:0002512 +name: corpus luteum +def: "A transient endocrine gland that develops from the postovulatory or atretic follicles and secretes progesterone; it is thought to be related to egg retention[PMID]." [http://en.wikipedia.org/wiki/Corpus_luteum, http://www.ncbi.nlm.nih.gov/pubmed/20959416] +subset: pheno_slim +subset: uberon_slim +synonym: "corpora lutea" EXACT PLURAL [] +synonym: "corpus luteum of ovary" EXACT [] +synonym: "luteal gland" RELATED [BTO:0000292] +synonym: "ovarian corpus luteum" EXACT [] +xref: BTO:0000292 +xref: CALOHA:TS-0181 +xref: Corpus:luteum +xref: EMAPA:29886 +xref: FMA:18619 +xref: GAID:369 +xref: http://linkedlifedata.com/resource/umls/id/C0010092 +xref: http://www.snomedbrowser.com/Codes/Details/257943001 +xref: MA:0002834 +xref: MESH:D003338 +xref: NCIT:C26465 +xref: UMLS:C0010092 {source="ncithesaurus:Corpus_Luteum"} +is_a: UBERON:0002368 {source="http://www.ncbi.nlm.nih.gov/pubmed/20959416"} ! endocrine gland +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005398 ! female reproductive gland +relationship: develops_from UBERON:0001305 ! ovarian follicle +relationship: part_of UBERON:0000992 {source="MA"} ! ovary +relationship: present_in_taxon NCBITaxon:7762 {source="http://www.ncbi.nlm.nih.gov/pubmed/20959416"} + +[Term] +id: UBERON:0002513 +name: endochondral bone +def: "Replacement bone that forms within cartilage." [GO:0001958, GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, https://github.com/obophenotype/uberon/issues/54, VSAO:0000145] +subset: uberon_slim +subset: vertebrate_core +synonym: "cartilaginous bone" RELATED [BTO:0002157] +synonym: "endochondral bones" RELATED PLURAL [ZFA:0001591] +synonym: "ossified chondrogenic bone" EXACT [VSAO:0000145] +xref: AAO:0010776 +xref: AEO:0000083 +xref: BTO:0002157 +xref: EHDAA2:0003083 +xref: FMA:24321 +xref: TAO:0001591 +xref: VSAO:0000145 +xref: XAO:0004018 +xref: ZFA:0001591 +is_a: UBERON:0001474 ! bone element +is_a: UBERON:0010363 {source="VSAO"} ! endochondral element +intersection_of: UBERON:0001474 ! bone element +intersection_of: develops_from UBERON:0005863 ! cartilaginous condensation +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +property_value: dc-contributor https://github.com/wdahdul +relationship: developmentally_replaces UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0007844 {source="VSAO"} ! cartilage element + +[Term] +id: UBERON:0002514 +name: intramembranous bone +def: "Bone tissue forms directly within mesenchyme, and does not replace other tissues[TAO]. Intramembranous ossification is the formation of bone in which osteoblasts secrete a collagen-proteoglycan matrix that binds calcium salts and becomes calcified[GO]. Intramembranous ossification is the way flat bones and the shell of a turtle are formed[GO]. Unlike endochondral ossification, cartilage is not present during intramembranous ossification[WP]." [GO:0001957, http://en.wikipedia.org/wiki/Intramembranous_ossification, https://github.com/obophenotype/uberon/issues/267] +synonym: "intramembranous bones" RELATED PLURAL [ZFA:0001635] +synonym: "membrane bone" RELATED [AEO:0000085] +xref: EMAPA:36615 +xref: Intramembranous:ossification +xref: TAO:0001644 +xref: ZFA:0001635 +is_a: UBERON:0001474 {source="VSAO"} ! bone element +relationship: develops_from UBERON:0003104 ! mesenchyme + +[Term] +id: UBERON:0002515 +name: periosteum +def: "the thick fibrous membrane that closely invests the entire surface of a bone except the articular cartilage at synovial joints" [ISBN:0-683-40008-8, MP:0010971] +subset: pheno_slim +subset: uberon_slim +xref: BTO:0001022 +xref: EMAPA:35681 +xref: FMA:24041 +xref: GAID:925 +xref: galen:PeriOsteum +xref: http://en.wikipedia.org/wiki/Periosteum +xref: http://linkedlifedata.com/resource/umls/id/C0031110 +xref: http://www.snomedbrowser.com/Codes/Details/33840008 +xref: MA:0002838 +xref: MESH:D010521 +xref: NCIT:C13184 +xref: UMLS:C0031110 {source="ncithesaurus:Periosteum"} +is_a: UBERON:0000158 ! membranous layer +relationship: composed_primarily_of UBERON:0011822 ! dense irregular connective tissue +relationship: part_of UBERON:0001474 ! bone element + +[Term] +id: UBERON:0002516 +name: epiphyseal plate +def: "A hyaline cartilage plate in the metaphysis at each end of a long bone. The plate is found in children and adolescents; in adults, who have stopped growing, the plate is replaced by an epiphyseal line." [http://en.wikipedia.org/wiki/Epiphyseal_plate] +subset: pheno_slim +subset: uberon_slim +synonym: "cartilago epiphysialis" RELATED [BTO:0000412] +synonym: "epiphyseal cartilage" RELATED [] +synonym: "epiphyseal disk" RELATED [BTO:0000412] +synonym: "epiphyseal growth disk" RELATED [BTO:0000412] +synonym: "epiphyseal growth plate" EXACT [] +synonym: "epiphyseal growth plate cartilage" EXACT [] +synonym: "epiphysial plate" EXACT [FMA:75427] +synonym: "growth plate" RELATED [MA:0002839] +synonym: "lamina epiphysialis" RELATED LATIN [http://en.wikipedia.org/wiki/Epiphyseal_plate] +synonym: "long bone epiphyseal plate" EXACT [MA:0002839] +synonym: "physis" RELATED [BTO:0000412] +xref: BTO:0000412 +xref: EMAPA:35505 +xref: Epiphyseal:plate +xref: FMA:75427 +xref: GAID:191 +xref: http://www.snomedbrowser.com/Codes/Details/84349008 +xref: MA:0002839 +xref: MESH:D006132 +is_a: UBERON:0001994 ! hyaline cartilage tissue +relationship: part_of UBERON:0001438 ! metaphysis + +[Term] +id: UBERON:0002517 +name: basicranium +def: "The base of skull is the most inferior area of the skull, composed of the endocranium and lower parts of the skull roof." [http://en.wikipedia.org/wiki/Base_of_skull] +comment: The skull base is formed from a series of cartilages either side of, and rostral to, the notochord, whose tip lies just caudal to the pituitary gland. It is closely associated with the sensory capsules, which partially or completely sur- round the olfactory epithelium, the eye, and the inner ear[PMID:11523816] +subset: pheno_slim +subset: uberon_slim +synonym: "base of cranium" EXACT [] +synonym: "base of skull" EXACT [FMA:52801] +synonym: "basis cranii" EXACT LATIN [FMA:52801, FMA:TA, http://en.wikipedia.org/wiki/Base_of_skull] +synonym: "cranial base" EXACT [FMA:52801, MA:0002840] +xref: FMA:52801 +xref: http://en.wikipedia.org/wiki/Base_of_skull +xref: http://linkedlifedata.com/resource/umls/id/C0149543 +xref: http://www.snomedbrowser.com/Codes/Details/181890004 +xref: MA:0002840 +xref: MESH:D019291 +xref: MFMO:0000044 +xref: NCIT:C12493 +xref: UMLS:C0149543 {source="ncithesaurus:Base_of_the_Skull"} +is_a: UBERON:0000075 ! subdivision of skeletal system +relationship: contributes_to_morphology_of UBERON:0003128 ! cranium +relationship: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0002241 ! chondrocranium + +[Term] +id: UBERON:0002518 +name: otolith organ +def: "the crystalline particles composed of calcium carbonate and a protein which adhere to the gelatinous membrane of the maculae of the utricle and saccule (otolithic membrane)" [ISBN:0-683-40008-8, MGI:llw2, MP:0002894] +subset: efo_slim +subset: organ_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "otolith organs" RELATED [ZFA:0000559] +synonym: "saccule and utricle" RELATED [MESH:A09.246.631.909.625] +synonym: "utricle and saccule" RELATED [MESH:A09.246.631.909.625] +xref: EFO:0003539 +xref: GAID:883 +xref: MA:0002841 +xref: MESH:D012444 +xref: Otolith:organ +xref: TAO:0000559 +xref: VHOG:0001676 +xref: ZFA:0000559 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0006585 ! vestibular organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0003051 ! ear vesicle +relationship: part_of UBERON:0001862 ! vestibular labyrinth + +[Term] +id: UBERON:0002519 +name: otolithic part of statoconial membrane +def: "The layer of the statoconial membrane that is composed of otoliths" [http://www.ncbi.nlm.nih.gov/pubmed/2482728] +subset: pheno_slim +subset: uberon_slim +synonym: "membrana statoconiorum" BROAD LATIN [FMA:75573, FMA:TA] +synonym: "otolith layer of statoconial membrane" EXACT [FMA:75573] +synonym: "otolithic membrane" BROAD [MA:0002842] +xref: FMA:75573 +xref: GAID:884 +xref: http://www.snomedbrowser.com/Codes/Details/362571006 +xref: MA:0002842 +xref: MESH:D010037 +xref: Otolithic:membrane +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005764 ! acellular membrane +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0005764 ! acellular membrane +intersection_of: composed_primarily_of UBERON:0002280 ! otolith +intersection_of: part_of UBERON:0016567 ! statoconial membrane +relationship: composed_primarily_of UBERON:0002280 ! otolith +relationship: part_of UBERON:0016567 ! statoconial membrane + +[Term] +id: UBERON:0002520 +name: submandibular lymph node +def: "The submandibular lymph nodes (submaxillary glands in older texts), three to six in number, are placed beneath the body of the mandible in the submaxillary triangle, and rest on the superficial surface of the submaxillary salivary gland. One gland, the middle gland of Stahr, which lies on the external maxillary artery as it turns over the mandible, is the most constant of the series; small lymph glands are sometimes found on the deep surface of the submaxillary salivary glands. The afferents of the submaxillary glands drain the medial palpebral commissure, the cheek, the side of the nose, the upper lip, the lateral part of the lower lip, the gums, and the anterior part of the margin of the tongue. Efferent vessels from the facial and submental glands also enter the submaxillary glands. Their efferent vessels pass to the superior deep cervical glands. [WP,unvetted]." [http://en.wikipedia.org/wiki/Submandibular_lymph_node] +subset: pheno_slim +subset: uberon_slim +synonym: "mandibular lymph node" RELATED SENSU [] +synonym: "nodi lymphoidei submandibulares" RELATED [BTO:0000769] +synonym: "submandibular node" EXACT [] +xref: BTO:0000769 +xref: FMA:61224 +xref: http://en.wikipedia.org/wiki/Submandibular_lymph_node +xref: http://linkedlifedata.com/resource/umls/id/C0229722 +xref: http://www.snomedbrowser.com/Codes/Details/245319003 +xref: MA:0002843 +xref: NCIT:C77650 +xref: UMLS:C0229722 {source="ncithesaurus:Submandibular_Lymph_Node"} +is_a: UBERON:0003968 {source="CL:tm"} ! peripheral lymph node + +[Term] +id: UBERON:0002521 +name: elastic tissue +def: "Connective tissue composed of elastic fibers." [http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "elastic connective tissue" EXACT [] +synonym: "elastic fiber" NARROW [] +synonym: "textus connectivus elasticus" EXACT LATIN [] +xref: Elastic:fiber +xref: FMA:20113 +xref: GAID:926 +xref: http://www.snomedbrowser.com/Codes/Details/27197004 +xref: MA:0002853 +xref: MESH:D004547 +xref: NCIT:C32495 +is_a: UBERON:0002384 ! connective tissue + +[Term] +id: UBERON:0002522 +name: tunica media +def: "The middle layer of an artery or vein. [WP,unvetted]." [http://en.wikipedia.org/wiki/Tunica_media] +comment: May be composed of smooth muscle and elastic tissue +subset: uberon_slim +synonym: "tunica media vasorum" RELATED [BTO:0002011] +synonym: "tunica media vasorum" RELATED LATIN [http://en.wikipedia.org/wiki/Tunica_media] +xref: BTO:0002011 +xref: EMAPA:36298 +xref: FMA:55590 +xref: GAID:170 +xref: http://linkedlifedata.com/resource/umls/id/C0162867 +xref: http://www.snomedbrowser.com/Codes/Details/61695000 +xref: MA:0002855 +xref: MESH:D017540 +xref: NCIT:C33821 +xref: Tunica:media +xref: UMLS:C0162867 {source="ncithesaurus:Tunica_Media"} +is_a: UBERON:0004797 {source="MA"} ! blood vessel layer +relationship: has_part UBERON:0002521 {source="cjm"} ! elastic tissue +relationship: has_part UBERON:0004237 {source="cjm"} ! blood vessel smooth muscle +relationship: surrounded_by UBERON:0005734 ! tunica adventitia of blood vessel + +[Term] +id: UBERON:0002523 +name: tunica intima +def: "The innermost layer of a blood vessel which is a lining of endothelial cells facing the lumen[Kardong]." [http://en.wikipedia.org/wiki/Tunica_intima, ISBN:0073040584, NCIT:C33820] +subset: uberon_slim +synonym: "Bichat's tunic" RELATED [BTO:0002012] +synonym: "intima" RELATED [BTO:0002012] +synonym: "tunica intima vasorum" RELATED [BTO:0002012] +xref: BTO:0002012 +xref: EMAPA:36297 +xref: FMA:55589 +xref: GAID:523 +xref: http://linkedlifedata.com/resource/umls/id/C0162864 +xref: http://www.snomedbrowser.com/Codes/Details/8361002 +xref: http://www.snomedbrowser.com/Codes/Details/87483006 +xref: MA:0002861 +xref: MESH:D017539 +xref: NCIT:C33820 +xref: Tunica:intima +xref: UMLS:C0162864 {source="ncithesaurus:Tunica_Intima"} +is_a: UBERON:0004923 {source="FMA"} ! organ component layer +disjoint_from: UBERON:0005738 ! swim bladder tunica interna +relationship: adjacent_to UBERON:0010161 {source="ISBN:0073040584"} ! lumen of blood vessel +relationship: has_part UBERON:0001986 ! endothelium +relationship: surrounded_by UBERON:0002522 {notes="check for exceptions, e.g. capillaries"} ! tunica media + +[Term] +id: UBERON:0002524 +name: mediastinal lymph node +def: "A lymph node that is part of a mediastinum. Each consists of several lymph node groups, especially along the trachea (5 groups), along the esophagus and between the lung and the diaphragm. In the mediastinal lymph nodes arises lymphatic ducts, which draines the lymph to the left subclavian vein (to the venous angle in the confluence of the subclavian and deep jugular veins). The mediastinal lymph nodes along the esophagus are in tight connection with the abdominal lymph nodes along the esophagus and the stomach. That fact facilitates spreading of tumors cells through these lymphatics in cases of cancers of the stomach and particularly of the esophagus. Through the mediastinum, the main lymphatic drainage from the abdominal organs goes via the thoracic duct (ductus thoracicus), which drains majority of the lymph from the abdomen to the above mentioned left venous angle." [http://en.wikipedia.org/wiki/Lymph_node#Lymph_nodes_of_the_thorax, OBOL:automatic] +subset: efo_slim +synonym: "mediastinal node" EXACT [] +xref: EFO:0001670 +xref: EMAPA:35555 +xref: FMA:12774 +xref: http://linkedlifedata.com/resource/umls/id/C0588055 +xref: http://www.snomedbrowser.com/Codes/Details/181760002 +xref: Lymph_nodes_of_the_thorax +xref: MA:0002877 +xref: NCIT:C33073 +xref: UMLS:C0588055 {source="ncithesaurus:Mediastinal_Lymph_Node"} +is_a: UBERON:0005178 ! thoracic cavity element +is_a: UBERON:0007644 {source="FMA"} ! thoracic lymph node +relationship: located_in UBERON:0003728 ! mediastinum + +[Term] +id: UBERON:0002525 +name: brachial lymph node +def: "The lymph nodes located along the brachial vein that receive drainage from most of the free upper limb and send efferent vessels to the central axillary lymph nodes." [http://en.wikipedia.org/wiki/Brachial_lymph_nodes, MP:0005231] +subset: pheno_slim +synonym: "nodi lymphoidei brachiales" RELATED LATIN [http://en.wikipedia.org/wiki/Brachial_lymph_nodes] +xref: FMA:44314 +xref: http://en.wikipedia.org/wiki/Brachial_lymph_nodes +xref: http://linkedlifedata.com/resource/umls/id/C0229840 +xref: MA:0002878 +xref: NCIT:C92221 +xref: UMLS:C0229840 {source="ncithesaurus:Brachial_Lymph_Node"} +is_a: UBERON:0000029 ! lymph node + +[Term] +id: UBERON:0002526 +name: lumbar lymph node +def: "The lumbar lymph nodes (paraaortic nodes) are a group of lymph nodes residing in the lumbar region. They consist of the following groups: right and left lateral aortic lymph nodes preaortic lymph nodes retroaortic lymph nodes (or 'postaortic')" [http://en.wikipedia.org/wiki/Lumbar_lymph_nodes] +synonym: "aortocaval lymph node" RELATED [FMA:84599] +synonym: "aortocaval node" RELATED [FMA:84599] +synonym: "area 16 lymph node" RELATED [FMA:84599] +synonym: "jPS 16 node" RELATED [FMA:84599] +synonym: "jPS no. 16 node" RELATED [FMA:84599] +synonym: "lumbar glands" RELATED [http://en.wikipedia.org/wiki/Lumbar_lymph_nodes] +synonym: "lumbo-aortic lymph node" RELATED [FMA:84599] +synonym: "para-aortic lumbar lymph node" RELATED [FMA:84599] +synonym: "parietal para-aortic lymph node" RELATED [FMA:84599] +xref: FMA:84599 +xref: http://en.wikipedia.org/wiki/Lumbar_lymph_nodes +xref: http://www.snomedbrowser.com/Codes/Details/281412000 +xref: MA:0002879 +xref: NCIT:C118775 +is_a: UBERON:0002507 ! abdominal lymph node + +[Term] +id: UBERON:0002527 +name: pancreatic lymph node +def: "A lymph node that is part of a pancreas [Automatically generated definition]." [OBOL:automatic] +synonym: "aJCC level 19 node" RELATED [FMA:16626] +synonym: "lymph node of pancreas" EXACT [OBOL:automatic] +synonym: "pancreas lymph node" EXACT [OBOL:automatic] +synonym: "pancreatic node" EXACT [] +synonym: "pyloric lymph node" RELATED INCONSISTENT [MA:0002881] +xref: FMA:16626 +xref: http://linkedlifedata.com/resource/umls/id/C0229783 +xref: http://www.snomedbrowser.com/Codes/Details/276170003 +xref: MA:0002881 +xref: NCIT:C77642 +xref: UMLS:C0229783 {source="ncithesaurus:Pancreatic_Lymph_Node"} +is_a: UBERON:0002507 ! abdominal lymph node +intersection_of: UBERON:0000029 ! lymph node +intersection_of: part_of UBERON:0001264 ! pancreas +relationship: part_of UBERON:0001264 ! pancreas + +[Term] +id: UBERON:0002528 +name: sacral lymph node +def: "A lymph node located in the sacral region." [ncithesaurus:Sacral_Lymph_Node] +synonym: "sacral node" EXACT [] +xref: FMA:16655 +xref: http://en.wikipedia.org/wiki/Sacral_lymph_nodes +xref: http://linkedlifedata.com/resource/umls/id/C0229827 +xref: http://www.snomedbrowser.com/Codes/Details/279797001 +xref: MA:0002883 +xref: NCIT:C77647 +xref: UMLS:C0229827 {source="ncithesaurus:Sacral_Lymph_Node"} +is_a: UBERON:0000029 ! lymph node +is_a: UBERON:0005179 ! pelvic region element +intersection_of: UBERON:0000029 ! lymph node +intersection_of: part_of UBERON:0005473 ! sacral region +relationship: part_of UBERON:0005473 ! sacral region + +[Term] +id: UBERON:0002529 +name: limb segment +def: "A major subdivision of a mature or developing limb, including both skeletal elements (or the mesenchyme that gives rise to the skeletal elements) and associated tissues, such as muscle, connective tissue, integument. Examples: autopod region, zeugopod region, stylopod region, metapodial region, arm region. Excludes the limb girdles." [https://orcid.org/0000-0002-6601-2165] +synonym: "extremity part" RELATED [] +synonym: "free limb segment" EXACT [FMA:241863] +synonym: "limb region" RELATED [] +synonym: "region of limb" RELATED [] +synonym: "segment of limb" EXACT [] +synonym: "subdivision of limb" EXACT [] +xref: FMA:241863 +xref: http://linkedlifedata.com/resource/umls/id/C1268195 +xref: MA:0002889 +xref: NCIT:C38630 +xref: UMLS:C1268195 {source="ncithesaurus:Extremity_Part"} +is_a: UBERON:0010538 ! paired limb/fin segment +intersection_of: UBERON:0010758 ! subdivision of organism along appendicular axis +intersection_of: part_of UBERON:0002101 ! limb +disjoint_from: UBERON:0010912 ! subdivision of skeleton +relationship: existence_ends_during UBERON:0000066 ! fully formed stage +relationship: existence_starts_during UBERON:0000068 ! embryo stage +relationship: has_part UBERON:0014892 ! skeletal muscle organ +relationship: part_of UBERON:0002101 ! limb + +[Term] +id: UBERON:0002530 +name: gland +alt_id: UBERON:MIAA_0000021 +def: "an organ that functions as a secretory or excretory organ" [MGI:csmith, MP:0002163] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "Druese" RELATED [BTO:0000522] +synonym: "glandula" RELATED [BTO:0000522] +synonym: "glandula" RELATED LATIN [http://en.wikipedia.org/wiki/Gland] +synonym: "glandular organ" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: AAO:0000212 +xref: AEO:0000096 +xref: BTO:0000522 +xref: EFO:0000797 +xref: EHDAA2:0003096 +xref: EHDAA:2161 +xref: EHDAA:4475 +xref: EHDAA:6522 +xref: EMAPA:18425 +xref: FBbt:00100317 +xref: FMA:7146 +xref: FMA:86294 +xref: galen:Gland +xref: HAO:0000375 +xref: http://en.wikipedia.org/wiki/Gland +xref: http://linkedlifedata.com/resource/umls/id/C1285092 +xref: http://www.snomedbrowser.com/Codes/Details/134358001 +xref: MA:0003038 +xref: MAT:0000021 +xref: MIAA:0000021 +xref: NCIT:C13319 +xref: OpenCyc:Mx4rwP3vyJwpEbGdrcN5Y29ycA +xref: UMLS:C1285092 {source="ncithesaurus:Gland"} +xref: WikipediaCategory:Glands +is_a: UBERON:0000062 ! organ +disjoint_from: UBERON:0013398 ! choroidal gland +relationship: produces UBERON:0000463 ! organism substance + +[Term] +id: UBERON:0002531 +name: paired fin bud +def: "An outgrowth on the lateral trunk of the embryo that develops into a paired fin. The fin bud is divided into ectoderm and mesenchyme[cjm, modified from MP]." [https://orcid.org/0000-0002-6601-2165, ISBN:9780878932504, MP:0005650] +subset: efo_slim +synonym: "fin bud" EXACT [ZFA:0001383] +synonym: "fin buds" EXACT PLURAL [VSAO:0000179] +xref: EFO:0003468 +xref: MAT:0000062 +xref: MIAA:0000062 +xref: TAO:0001383 +xref: VSAO:0000179 +xref: ZFA:0001383 +is_a: UBERON:0004357 ! paired limb/fin bud +intersection_of: UBERON:0004357 ! paired limb/fin bud +intersection_of: has_potential_to_develop_into UBERON:0002534 ! paired fin +relationship: has_developmental_contribution_from UBERON:0005731 ! fin field +relationship: has_potential_to_develop_into UBERON:0002534 ! paired fin + +[Term] +id: UBERON:0002532 +name: epiblast (generic) +def: "In amniote animal embryology, the epiblast is a tissue type derived either from the inner cell mass in mammals or the blastodisc in birds and reptiles. It lies above the hypoblast. In mammalian embryogenesis, the columnar cells of the epiblast are adjacent to the trophoblast, while the cuboidal cells of the hypoblast are closer to the blastocoele. The epiblast, whilst referred to as the primary ectoderm, differentiates to form all three layers of the trilaminar germ disc in a process called gastrulation[WP]. The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation[ZFA]" [http://en.wikipedia.org/wiki/Epiblast, ZFIN:curator] +subset: early_development +subset: grouping_class +subset: uberon_slim +subset: vertebrate_core +synonym: "blastocyst" RELATED [] +synonym: "ectoblast" RELATED [MP:0003886] +synonym: "epiblast" EXACT [VHOG:0000243] +synonym: "epiblastus" RELATED LATIN [http://en.wikipedia.org/wiki/Epiblast] +synonym: "primitive ectoderm" RELATED [VHOG:0000243] +xref: BTO:0004593 +xref: FMA:296704 +xref: http://en.wikipedia.org/wiki/Epiblast +xref: MAT:0000067 +xref: MIAA:0000067 +xref: VHOG:0000243 +is_a: UBERON:0002050 ! embryonic structure + +[Term] +id: UBERON:0002533 +name: post-anal tail bud +def: "The rapidly proliferating mass of cells at the caudal extremity of the embryo; remnant of the primitive node." [BTO:0001445] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "end bud" RELATED [BTO:0001445] +synonym: "tail bud" EXACT [ZFA:0000077] +synonym: "tail bud mesenchyme" RELATED [ZFA:0000077] +synonym: "tailbud" EXACT [] +xref: AAO:0011104 +xref: BTO:0001445 +xref: EFO:0002748 +xref: EHDAA2:0001976 +xref: EHDAA:1595 +xref: EMAPA:16580 +xref: MAT:0000070 +xref: MIAA:0000070 +xref: TAO:0000077 +xref: VHOG:0000201 +xref: XAO:0000107 +xref: ZFA:0000077 +is_a: UBERON:0006598 ! presumptive structure +relationship: has_potential_to_develop_into UBERON:0007812 ! post-anal tail + +[Term] +id: UBERON:0002534 +name: paired fin +def: "Fin that is one of a pair located ventrally on the organism." [TAO:wd] +subset: uberon_slim +synonym: "artioptérygie@fr" EXACT [VSAO:0000111] +synonym: "nageoire paire@fr" EXACT [VSAO:0000111] +synonym: "pelvic/pectoral fin" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: TAO:0002278 +xref: VSAO:0000111 +xref: ZFA:0005596 +is_a: UBERON:0004708 ! paired limb/fin +is_a: UBERON:0008897 {source="ZFA"} ! fin +intersection_of: UBERON:0004708 ! paired limb/fin +intersection_of: has_skeleton UBERON:0010713 ! paired fin skeleton +relationship: develops_from UBERON:0002531 {source="PHENOSCAPE:wd", source="ZFA"} ! paired fin bud +relationship: has_skeleton UBERON:0010713 ! paired fin skeleton + +[Term] +id: UBERON:0002535 +name: gill +def: "Anatomical surface structure found in many aquatic organisms. It is a respiration organ whose function is the extraction of oxygen from water and the excretion of carbon dioxide. The microscopic structure of a gill is such that it presents a very large surface area to the external environment. Gills usually consist of thin filaments of tissue, branches, or slender tufted processes which have a highly folded surface to increase surface area. A high surface area is crucial to the gas exchange of aquatic organisms as water contains only 1/20 parts dissolved Oxygen compared to air. With the exception of some aquatic insects, the filaments and lamellae (folds) contain blood or coelomic fluid, from which gases are exchanged through the thin walls. Oxygen is carried by the blood to other parts of the body. Carbon dioxide passes from the blood through the thin gill tissue into the water. Gills or gill-like organs, located in different parts of the body, are found in various groups of aquatic animals, including mollusks, crustaceans, insects, fish, and amphibians." [http://en.wikipedia.org/wiki/Gill] +comment: this term potentially applicable across multiple metazoa - see also the subclass 'pharyngeal arch derived gill' +subset: functional_classification +xref: AAO:0010171 +xref: http://en.wikipedia.org/wiki/Gill +xref: MESH:D005880 +is_a: UBERON:0000062 ! organ +relationship: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0002536 +name: arthropod sensillum +def: "Sense organ embedded in the integument and consisting of one or a cluster of sensory neurons and associated sensory structures, support cells and glial cells forming a single organised unit with a largely bona-fide boundary.[FBbt]" [FBbt:00007152, http://en.wikipedia.org/wiki/Sensillum] +subset: efo_slim +subset: uberon_slim +synonym: "sensillum" EXACT [FBbt:00007152, HAO:0000933] +xref: BTO:0001237 +xref: EFO:0000939 +xref: FBbt:00007152 +xref: HAO:0000933 +xref: http://en.wikipedia.org/wiki/Sensillum +xref: MAT:0000163 +xref: MIAA:0000163 +xref: TGMA:0000540 +is_a: UBERON:0000020 ! sense organ +relationship: part_of UBERON:0001016 ! nervous system + +[Term] +id: UBERON:0002537 +name: hermaphrodite gonad +def: "A gonad with both testicular and ovarian aspects[WP]." [http://en.wikipedia.org/wiki/Ovotestis] +subset: efo_slim +synonym: "glandula hermaphroditica" NARROW SENSU [http://en.wikipedia.org/wiki/Ovotestis#In_gastropods] +synonym: "hermaphrodite genitalia" EXACT [GO:0040035] +synonym: "hermaphrodite gland" NARROW SENSU [http://en.wikipedia.org/wiki/Ovotestis#In_gastropods] +synonym: "ovotestis" RELATED [BTO:0000981] +xref: BTO:0000981 +xref: EFO:0000971 +xref: http://en.wikipedia.org/wiki/Ovotestis +xref: MAT:0000165 +xref: MIAA:0000165 +xref: WBbt:0005178 +is_a: UBERON:0000991 ! gonad +relationship: part_of UBERON:0007197 ! hermaphroditic organism + +[Term] +id: UBERON:0002538 +name: hatching gland +def: "The cells of the hatching gland contain enzymes responsible for solubilization of the egg chorion, facilitating the hatching process[GO]. A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland." [ZFIN:curator] +subset: efo_slim +subset: uberon_slim +synonym: "frontal gland" RELATED [] +synonym: "hgg" RELATED [] +xref: AAO:0011050 +xref: BTO:0000558 +xref: EFO:0000863 +xref: MAT:0000180 +xref: MIAA:0000180 +xref: TAO:0000026 +xref: VHOG:0000078 +xref: XAO:0000034 +xref: ZFA:0000026 +is_a: UBERON:0002530 {source="GO"} ! gland +relationship: part_of UBERON:0000924 ! ectoderm + +[Term] +id: UBERON:0002539 +name: pharyngeal arch +def: "One of a series of paired bulges that develop along the lateral walls of the foregut. The pharyngeal arches have developmental contributions from endoderm, mesoderm, and neural crest cells and are separated by anterior lateral endoderm out-pockets known as pharyngeal pouches." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/16313389, ZFA:yb] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "arcus pharyngei" RELATED LATIN [http://en.wikipedia.org/wiki/Pharyngeal_arch] +synonym: "branchial arch" NARROW [BTO:0001785, MP:0002884] +synonym: "pharyngeal arches" EXACT PLURAL [] +synonym: "visceral arch" RELATED [] +xref: AAO:0010359 +xref: BTO:0001785 +xref: EFO:0000959 +xref: EHDAA:571 +xref: EMAPA:16117 +xref: FMA:293015 +xref: GAID:1292 +xref: http://linkedlifedata.com/resource/umls/id/C0080322 +xref: http://www.snomedbrowser.com/Codes/Details/308766004 +xref: MAT:0000242 +xref: MESH:A16.254.160 +xref: MIAA:0000242 +xref: NCIT:C34249 +xref: Pharyngeal:arch +xref: TAO:0001306 +xref: UMLS:C0080322 {source="ncithesaurus:Pharyngeal_Arch"} +xref: VHOG:0000155 +xref: XAO:0000096 +xref: ZFA:0001306 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0010188 {source="EHDAA2"} ! protuberance +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: developmentally_induced_by UBERON:0007690 {source="http://www.ncbi.nlm.nih.gov/pubmed/16313389"} ! early pharyngeal endoderm +relationship: part_of UBERON:0008814 ! pharyngeal arch system +relationship: part_of UBERON:0008816 {source="http://www.ncbi.nlm.nih.gov/pubmed/16313389"} ! embryonic head + +[Term] +id: UBERON:0002540 +name: lateral line system +def: "A line of sensory organs and associated structures along the sides of fish and amphibia that detect vibrations and pressure changes." [http://en.wikipedia.org/wiki/Lateral_line_system, http://orcid.org/0000-0002-6601-2165, ISBN:0471209627, ISBN:0815318960] +subset: efo_slim +subset: uberon_slim +synonym: "lateral line organs" RELATED [VHOG:0001243] +synonym: "lateral line stitches" RELATED [] +synonym: "lateral-line organs" RELATED [] +synonym: "ll" RELATED [] +xref: AAO:0000269 +xref: AAO:0000975 +xref: EFO:0000941 +xref: http://en.wikipedia.org/wiki/Lateral_line_system +xref: MAT:0000249 +xref: MIAA:0000249 +xref: TAO:0000034 +xref: VHOG:0001243 +xref: XAO:0000095 +xref: ZFA:0000034 +is_a: UBERON:0001032 ! sensory system +relationship: has_part UBERON:0010202 ! lateral line + +[Term] +id: UBERON:0002541 +name: germ ring +def: "The thickend rim of the blastoderm evident during late blastula and gastrula stages[FishBase]. Embryonic structure which is a uniform thickened annulus at the blastoderm margin, consisting of two layers in addition to the EVL, the epiblast and the hypoblast. The germ ring is formed by the involution of the blastoderm back upon itself[ZFA]" [http://www.fishbase.org/glossary/Glossary.php?q=germ%20ring] +subset: early_development +subset: efo_slim +xref: AAO:0000211 +xref: EFO:0003427 +xref: MAT:0000255 +xref: MIAA:0000255 +xref: TAO:0000111 +xref: ZFA:0000111 +is_a: UBERON:0002050 ! embryonic structure +relationship: dubious_for_taxon NCBITaxon:40674 +relationship: part_of UBERON:0004734 ! gastrula + +[Term] +id: UBERON:0002542 +name: scale +def: "A small rigid plate that grows out of an animal's skin to provide protection. In lepidopteran (butterfly and moth) species, scales are plates on the surface of the insect wing, and provide coloration. Scales are quite common and have evolved multiple times with varying structure and function." [http://en.wikipedia.org/wiki/Scale_(zoology)] +subset: efo_slim +subset: grouping_class +synonym: "scale (sensu Metazoa)" EXACT [] +synonym: "scale tissue" RELATED [BTO:0005055] +synonym: "scales" RELATED PLURAL [] +xref: BTO:0005055 +xref: EFO:0000960 +xref: HAO:0000907 +xref: MAT:0000257 +xref: MIAA:0000257 +xref: OpenCyc:Mx4rvVi9M5wpEbGdrcN5Y29ycA +xref: Scale:(zoology) +is_a: UBERON:0003102 ! surface structure +relationship: present_in_taxon NCBITaxon:9972 + +[Term] +id: UBERON:0002543 +name: obsolete median fin skeleton +def: "Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism." [TAO:wd] +comment: Mistakenly placed in uberon, should remain domain of TAO for now +synonym: "axial fin skeleton" EXACT [TAO:0001123] +synonym: "unpaired fin skeleton" EXACT [ZFA:0001123] +is_obsolete: true +consider: EFO:0000950 +consider: MAT:0000277 +consider: MIAA:0000277 +consider: ZFA:0001123 + +[Term] +id: UBERON:0002544 +name: digit +def: "A subdivision of the autopod that has as part a series of phalanges together with associated vasculature, musculature, integument and nerves. It is continuous with the metapodial subdivision of the autopod, but does not include the metapodials. In species such as humans, fully formed digits are distinct, whereas in other species the digits may be connected by interdigital webbing, or may be completely unseparated (for example, in cetaceans)." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/420] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "acropodial unit" EXACT [] +synonym: "digit (phalangeal portion) plus soft tissue" EXACT COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "limb digit" EXACT [MA:0000690] +xref: AAO:0011126 +xref: Digit:(anatomy) +xref: EFO:0000881 +xref: EMAPA:32725 +xref: FMA:85518 {notes="GAT"} +xref: galen:Digit +xref: http://linkedlifedata.com/resource/umls/id/C0582802 +xref: http://www.snomedbrowser.com/Codes/Details/361367007 +xref: MA:0000690 +xref: MAT:0000285 +xref: MIAA:0000285 +xref: NCIT:C40186 +xref: OpenCyc:Mx4rvzLD_ZwpEbGdrcN5Y29ycA +xref: UMLS:C0582802 {source="ncithesaurus:Digit"} +xref: VHOG:0000944 +xref: XAO:0003032 +is_a: UBERON:0005881 ! autopodial extension +intersection_of: UBERON:0005881 ! autopodial extension +intersection_of: part_of UBERON:0012354 ! acropodium region +disjoint_from: UBERON:0005880 ! prepollex +disjoint_from: UBERON:0012136 ! prehallux +relationship: contributes_to_morphology_of UBERON:0002470 ! autopod region +property_value: dc-contributor https://github.com/alex-dececchi +property_value: dc-contributor https://github.com/balhoff +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/wdahdul +relationship: has_part UBERON:0015023 ! phalanx endochondral element +relationship: part_of UBERON:0012354 ! acropodium region +relationship: part_of UBERON:5002544 ! digit plus metapodial segment + +[Term] +id: UBERON:0002545 +name: obsolete body ganglion +synonym: "trunk ganglion" RELATED [] +xref: EFO:0000901 +xref: MAT:0000344 +xref: MIAA:0000344 +is_obsolete: true +consider: WBbt:0005332 + +[Term] +id: UBERON:0002546 +name: cranial placode +def: "Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic." [http://www.ncbi.nlm.nih.gov/books/NBK53175/, https://github.com/obophenotype/uberon/issues/135, https://github.com/seger/aao/issues/4, https://orcid.org/0000-0002-6601-2165, https://sourceforge.net/p/obo/xenopus-anatomy-xao-term-requests/11/] +subset: efo_slim +synonym: "cranial placodes" RELATED PLURAL [XAO:0000305] +synonym: "ectodermal cranial placode" EXACT [UBERON:cjm] +synonym: "ectodermal placode" BROAD INCONSISTENT [FMA:293966, http://www.ncbi.nlm.nih.gov/pubmed/22512454] +synonym: "placode" BROAD [http://en.wikipedia.org/wiki/Placode] +xref: AAO:0010466 +xref: EFO:0001650 +xref: FMA:293966 +xref: MAT:0000369 +xref: MIAA:0000369 +xref: XAO:0000305 +is_a: UBERON:0005085 {source="cjm"} ! ectodermal placode +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0002547 +name: tadpole +def: "An an organism at the tadpole stage" [https://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "tadpole stage" RELATED [] +xref: BTO:0001347 +xref: MAT:0000370 +xref: MIAA:0000370 +is_a: UBERON:0002548 ! larva +intersection_of: UBERON:0000468 ! multicellular organism +intersection_of: existence_starts_and_ends_during UBERON:0009849 ! tadpole stage +relationship: existence_starts_and_ends_during UBERON:0009849 ! tadpole stage + +[Term] +id: UBERON:0002548 +name: larva +def: "A distinct juvenile form many animals undergo before metamorphosis into adults. Animals with indirect development such as insects, amphibians, or cnidarians typically have a larval phase of their life cycle." [http://en.wikipedia.org/wiki/Larva] +subset: uberon_slim +synonym: "ammocoete" NARROW [http://en.wikipedia.org/wiki/Larva] +synonym: "bipinnaria" NARROW [http://en.wikipedia.org/wiki/Larva] +synonym: "caterpillar" NARROW [http://en.wikipedia.org/wiki/Larva] +synonym: "glochidium" NARROW [http://en.wikipedia.org/wiki/Larva] +synonym: "grub" NARROW [http://en.wikipedia.org/wiki/Larva] +synonym: "larval organism" EXACT [TAO:0002048] +synonym: "leptocephalus" NARROW [http://en.wikipedia.org/wiki/Larva] +synonym: "maggot" NARROW [http://en.wikipedia.org/wiki/Larva] +synonym: "naiad" NARROW [http://en.wikipedia.org/wiki/Larva] +synonym: "nymph" NARROW [http://en.wikipedia.org/wiki/Larva] +synonym: "planula" NARROW [http://en.wikipedia.org/wiki/Larva] +synonym: "tadpole" NARROW [http://en.wikipedia.org/wiki/Larva] +synonym: "trochophore" NARROW [http://en.wikipedia.org/wiki/Larva] +synonym: "veliger" NARROW [http://en.wikipedia.org/wiki/Larva] +synonym: "wriggler" NARROW [http://en.wikipedia.org/wiki/Larva] +synonym: "zoea" NARROW [http://en.wikipedia.org/wiki/Larva] +xref: AEO:0000126 +xref: BTO:0000707 +xref: FBbt:00001727 +xref: HAO:0000459 +xref: http://en.wikipedia.org/wiki/Larva +xref: OpenCyc:Mx4rwQCBvZwpEbGdrcN5Y29ycA +xref: TAO:0002048 +is_a: UBERON:0000468 ! multicellular organism +intersection_of: UBERON:0000468 ! multicellular organism +intersection_of: existence_starts_and_ends_during UBERON:0000069 ! larval stage +relationship: existence_starts_and_ends_during UBERON:0000069 ! larval stage + +[Term] +id: UBERON:0002549 +name: ventral trigeminal tract +def: "The Anterior trigeminothalamic tract (or ventral trigeminothalamic tract) serves as pain, temperature, and light touch pathway from the face, head and neck. It receives input from trigeminal nerve, facial nerve, glossopharyngeal nerve and vagus nerve. It receives discriminative tactile and pressure input from the contralateral principal sensory nucleus of CN V, which terminates in the ventral posteromedial nucleus of the thalamus. It then ascends to the contralateral sensory cortex via three neurons ." [http://en.wikipedia.org/wiki/Anterior_trigeminothalamic_tract] +subset: uberon_slim +synonym: "anterior trigeminothalamic tract" EXACT [FMA:72506] +synonym: "tractus trigeminalis ventralis" RELATED LATIN [NeuroNames:613] +synonym: "tractus trigeminothalamicus anterior" EXACT LATIN [FMA:72506, FMA:TA] +synonym: "tractus trigeminothalamicus anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_trigeminothalamic_tract] +synonym: "trigeminal lemniscus-2" EXACT [FMA:72506] +synonym: "ventral crossed tract" EXACT [FMA:72506] +synonym: "ventral secondary ascending tract of V" EXACT [] +synonym: "ventral secondary ascending tract of V" RELATED [NeuroNames:613] +synonym: "ventral trigeminal pathway" EXACT [FMA:72506] +synonym: "ventral trigeminal tract" RELATED [http://en.wikipedia.org/wiki/Anterior_trigeminothalamic_tract] +synonym: "ventral trigeminothalamic tract" EXACT [FMA:72506] +synonym: "ventral trigeminothalamic tract" RELATED [http://en.wikipedia.org/wiki/Anterior_trigeminothalamic_tract] +xref: BAMS:v5 +xref: BIRNLEX:1001 +xref: DHBA:12803 +xref: FMA:72506 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=613 {source="BIRNLEX:1001"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=613 +xref: http://en.wikipedia.org/wiki/Anterior_trigeminal_tract +xref: http://linkedlifedata.com/resource/umls/id/C0175460 +xref: UMLS:C0175460 {source="BIRNLEX:1001"} +is_a: UBERON:0004171 ! trigeminothalamic tract +is_a: UBERON:0007702 ! tract of brain +disjoint_from: UBERON:0002797 {source="lexical"} ! dorsal trigeminal tract +relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum + +[Term] +id: UBERON:0002550 +name: anterior hypothalamic region +synonym: "AHR" BROAD ABBREVIATION [BIRNLEX:1005, NIFSTD:NeuroNames_abbrevSource] +synonym: "anterior hypothalamic area" EXACT [DHBA:266441551] +synonym: "chiasmal zone" EXACT [FMA:62027] +synonym: "preoptic division" RELATED [NeuroNames:376] +xref: BAMS:AHR +xref: BIRNLEX:1005 +xref: DHBA:266441551 +xref: FMA:62027 +xref: HBA:12902 +xref: HBA:4570 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2381 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=376 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=376 {source="BIRNLEX:1005"} +xref: http://linkedlifedata.com/resource/umls/id/C0020653 +xref: MESH:A08.186.211.730.385.357.342 +xref: UMLS:C0020653 {source="BIRNLEX:1005"} +is_a: UBERON:0002616 ! regional part of brain +disjoint_from: UBERON:0002706 {source="lexical"} ! posterior nucleus of hypothalamus +disjoint_from: UBERON:0002770 {source="lexical"} ! posterior hypothalamic region +relationship: part_of UBERON:0001898 ! hypothalamus + +[Term] +id: UBERON:0002551 +name: interstitial nucleus of Cajal +def: "The largest and most prominent of the cell groups of the medial longitudinal fasciculus" [http://orcid.org/0000-0002-6601-2165] +synonym: "ICjl" BROAD ABBREVIATION [BIRNLEX:1008, NIFSTD:NeuroNames_abbrevSource] +synonym: "interstitial nucleus" BROAD [FMA:72432] +synonym: "interstitial nucleus of Cajal" RELATED [BAMS:INC] +synonym: "interstitial nucleus of medial longitudinal fasciculus" EXACT [FMA:72432] +synonym: "interstitial nucleus of medial longitudinal fasciculus (Crosby)" EXACT [] +synonym: "interstitial nucleus of the medial longitudinal fascicle (Boyce 1895)" RELATED [NeuroNames:515] +synonym: "interstitial nucleus of the medial longitudinal fasciculus" RELATED [BAMS:IMLF] +synonym: "NIC" EXACT ABBREVIATION [] +synonym: "nucleus interstitialis" EXACT LATIN [FMA:72432, FMA:TA] +synonym: "nucleus interstitialis Cajal" RELATED LATIN [NeuroNames:515] +synonym: "nucleus of the posterior commissure (Kvlliker)" RELATED [NeuroNames:515] +xref: BAMS:ICA +xref: BAMS:ICjl +xref: BAMS:IMLF +xref: BAMS:INC +xref: BAMS:InC +xref: BIRNLEX:1008 +xref: BM:MB-ICA +xref: DHBA:12278 +xref: FMA:72432 +xref: HBA:9015 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=515 {source="BIRNLEX:1008"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=515 +xref: http://linkedlifedata.com/resource/umls/id/C0228418 +xref: http://www.snomedbrowser.com/Codes/Details/369251002 +xref: MBA:67 +xref: UMLS:C0228418 {source="BIRNLEX:1008"} +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus +relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum + +[Term] +id: UBERON:0002552 +name: vestibulocerebellar tract +def: "White matter tract containing axons arising in the vestibular ganglion primarily projecting to the ipsilateral cerebellum via the inferior cerebellar peduncle (Heimer, L. The Human Brain, 2nd ed., 1995, pg 370)." [BIRNLEX:1009] +subset: uberon_slim +synonym: "tractus vestibulocerebelli" RELATED LATIN [NeuroNames:615] +synonym: "vestibulocerebellar fibers" EXACT [FMA:72508] +xref: BAMS:vcb +xref: BIRNLEX:1009 +xref: DHBA:12754 +xref: FMA:72508 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=615 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=615 {source="BIRNLEX:1009"} +xref: http://linkedlifedata.com/resource/umls/id/C0175462 +xref: UMLS:C0175462 {source="BIRNLEX:1009"} +xref: Vestibulocerebellar:tract +is_a: UBERON:0007702 ! tract of brain +relationship: part_of UBERON:0003023 ! pontine tegmentum + +[Term] +id: UBERON:0002553 +name: anatomical cavity +def: "Anatomical space which contains portions of one or more body substances and is bounded by the internal surface of one maximally connected anatomical structure. Examples: cranial cavity, pharyngeal recess space, nasal cavity, tooth socket, cavity of serous sac, lumen of stomach, lumen of artery, fornix of vagina." [FMA:67552] +subset: upper_level +synonym: "cavity" BROAD [] +xref: BIRNLEX:1011 +xref: EMAPA:37442 {source="MA:th"} +xref: FMA:67552 +xref: galen:Cavity +xref: MA:0002447 +xref: NCIT:C34007 +is_a: UBERON:0000464 ! anatomical space +relationship: location_of UBERON:0000463 ! organism substance + +[Term] +id: UBERON:0002554 +name: obsolete regional part of superior colliculus +def: "A multi-tissue structure that is part of a superior colliculus." [OBOL:automatic] +subset: non_informative +synonym: "segment of superior colliculus" RELATED [FMA:85592] +synonym: "superior colliculus segment" RELATED [FMA:85592] +is_obsolete: true +consider: BIRNLEX:1014 +consider: FMA:85592 + +[Term] +id: UBERON:0002555 +name: intermediate hypothalamic region +def: "The portion of the hypothalamus located generally internal to the region of the infundibulum." [http://medical-dictionary.thefreedictionary.com] +comment: ) +synonym: "area hypothalamica intermedia" EXACT LATIN [FMA:62028, FMA:TA] +synonym: "IHR" BROAD ABBREVIATION [BIRNLEX:1015, NIFSTD:NeuroNames_abbrevSource] +synonym: "intermediate hypothalamic area" EXACT [FMA:62028] +synonym: "intermediate hypothalamus" RELATED [TAO:0006000] +synonym: "medial hypothalamus" RELATED [MESH:A08.186.211.730.385.357.352] +synonym: "middle hypothalamus" RELATED [MESH:A08.186.211.730.385.357.352] +synonym: "regio hypothalamica intermedia" RELATED LATIN [NeuroNames:392] +xref: BAMS:IHR +xref: BIRNLEX:1015 +xref: FMA:62028 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=392 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=392 {source="BIRNLEX:1015"} +xref: http://linkedlifedata.com/resource/umls/id/C0020669 +xref: MESH:A08.186.211.730.385.357.352 +xref: TAO:0006000 +xref: UMLS:C0020669 {source="BIRNLEX:1015"} +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0001898 ! hypothalamus + +[Term] +id: UBERON:0002556 +name: corticotectal tract +synonym: "cortico-tectal tract" RELATED [NeuroNames:485] +synonym: "corticotectal fibers" EXACT [FMA:72419] +synonym: "corticotectal fibres" EXACT [FMA:72419] +synonym: "fibrae corticotectales" EXACT LATIN [FMA:72419, FMA:TA] +synonym: "tractus corticotectalis" RELATED LATIN [NeuroNames:485] +xref: BAMS:cte +xref: BAMS:ctt +xref: BIRNLEX:1016 +xref: BM:CTT +xref: DHBA:12050 +xref: FMA:72419 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=485 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=485 {source="BIRNLEX:1016"} +xref: http://linkedlifedata.com/resource/umls/id/C0262216 +xref: MBA:1036 +xref: UMLS:C0262216 {source="BIRNLEX:1016"} +is_a: UBERON:0007702 {source="FMA"} ! tract of brain +relationship: part_of UBERON:0002314 {source="NIFSTD"} ! midbrain tectum + +[Term] +id: UBERON:0002557 +name: linear nucleus +comment: The mesocorticolimbic dopamine (DA) system plays important roles in reward, motivation, learning, memory, and movement. This system arises from the A10 region, comprising the ventral tegmental area and three adjacent midline nuclei (caudal linear nucleus, interfascicular nucleus, and rostral linear nucleus of the raphe)[PMID:21653852] +synonym: "Li" BROAD ABBREVIATION [BIRNLEX:1018, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus linearis" RELATED LATIN [NeuroNames:519] +synonym: "rostral and caudal linear nuclei of the raphe" RELATED [NeuroNames:519] +xref: BIRNLEX:1018 +xref: DHBA:12230 +xref: FMA:72436 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=519 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=519 {source="BIRNLEX:1018"} +xref: http://linkedlifedata.com/resource/umls/id/C0175404 +xref: UMLS:C0175404 {source="BIRNLEX:1018"} +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus +relationship: adjacent_to UBERON:0002691 {source="http://www.ncbi.nlm.nih.gov/pubmed/21653852"} ! ventral tegmental area +relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum + +[Term] +id: UBERON:0002558 +name: organ cavity +subset: upper_level +synonym: "cavity of organ" EXACT [FMA:12237] +xref: BIRNLEX:1019 +xref: FMA:12237 +xref: http://www.snomedbrowser.com/Codes/Details/362606005 +is_a: UBERON:0002553 ! anatomical cavity + +[Term] +id: UBERON:0002559 +name: medullary reticular formation +def: "The reticular formation is a series of brain nuclei located in the medulla oblongata" [GO:0021723] +subset: vertebrate_core +synonym: "bulb reticular formation" EXACT [OBOL:automatic] +synonym: "bulbar reticular formation" EXACT [FMA:72241] +synonym: "formatio reticularis myelencephali" RELATED LATIN [NeuroNames:725] +synonym: "medulla oblongata reticular formation" EXACT [OBOL:automatic] +synonym: "medulla oblonmgata reticular formation" EXACT [OBOL:automatic] +synonym: "medullary reticular nucleus" EXACT [MA:0001049] +synonym: "metepencephalon reticular formation" EXACT [OBOL:automatic] +synonym: "reticular formation" BROAD [ZFA:0000421] +synonym: "reticular formation of bulb" EXACT [OBOL:automatic] +synonym: "reticular formation of medulla" EXACT [FMA:72241] +synonym: "reticular formation of medulla oblongata" EXACT [OBOL:automatic] +synonym: "reticular formation of medulla oblonmgata" EXACT [OBOL:automatic] +synonym: "reticular formation of metepencephalon" EXACT [OBOL:automatic] +synonym: "rhombencephalic reticular formation" EXACT [GO:0021723] +xref: BAMS:MDRN +xref: BAMS:MeRF +xref: BAMS:RET-MO +xref: BIRNLEX:1020 +xref: BM:Me-MeRF +xref: DHBA:12616 +xref: EMAPA:35556 +xref: FMA:72241 +xref: GAID:588 +xref: HBA:9587 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=725 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=725 {source="BIRNLEX:1020"} +xref: http://linkedlifedata.com/resource/umls/id/C0228520 +xref: http://www.snomedbrowser.com/Codes/Details/369059009 +xref: MA:0001049 +xref: MBA:395 +xref: TAO:0000421 +xref: UMLS:C0228520 {source="BIRNLEX:1020"} +xref: ZFA:0000421 +is_a: UBERON:0007245 ! nuclear complex of neuraxis +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: part_of UBERON:0001896 ! medulla oblongata +relationship: part_of UBERON:0002275 ! reticular formation + +[Term] +id: UBERON:0002560 +name: temporal operculum +def: "Part of temporal lobe overlaying the insular cortex" [BIRNLEX:1025] +synonym: "facies supratemporalis" EXACT [FMA:74891] +synonym: "operculum temporale" RELATED LATIN [http://en.wikipedia.org/wiki/Operculum_(brain)] +xref: BAMS:TOp +xref: BAMS:top +xref: BIRNLEX:1025 +xref: FMA:74891 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=127 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=127 {source="BIRNLEX:1025"} +xref: http://linkedlifedata.com/resource/umls/id/C0149551 +xref: http://www.snomedbrowser.com/Codes/Details/369222001 +xref: UMLS:C0149551 {source="BIRNLEX:1025"} +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0010262 ! operculum of brain + +[Term] +id: UBERON:0002561 +name: lumen of central nervous system +def: "The cavity that is enclosed by the central nervous system. In vertebrates this is the cavity that includes as parts ventricular cavities and the central canal of the spinal cord that develops from the lumen of the neura tube" [https://orcid.org/0000-0002-6601-2165] +synonym: "cavity of neuraxis" EXACT [FMA:75007] +synonym: "cavity of ventricular system of neuraxis" EXACT [FMA:75007] +synonym: "neuraxis cavity" EXACT [FMA:75007] +synonym: "neuraxis lumen" EXACT [] +xref: BIRNLEX:1029 +xref: FMA:75007 +is_a: UBERON:0002558 ! organ cavity +intersection_of: UBERON:0002558 ! organ cavity +intersection_of: luminal_space_of UBERON:0001017 ! central nervous system +relationship: luminal_space_of UBERON:0001017 ! central nervous system +relationship: part_of UBERON:0001017 ! central nervous system +relationship: present_in_taxon NCBITaxon:569425 {source="https://doi.org/10.1186/s12983-014-0089-2"} + +[Term] +id: UBERON:0002562 +name: superior frontal sulcus +def: "The superior frontal sulcus is a sulcus between the superior frontal gyrus and the middle frontal gyrus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Superior_frontal_sulcus] +subset: uberon_slim +synonym: "SFRS" BROAD ABBREVIATION [BIRNLEX:1030, NIFSTD:NeuroNames_abbrevSource] +synonym: "sulcus f1" EXACT [FMA:83755] +synonym: "sulcus frontalis primus" EXACT [BIRNLEX:1030] +synonym: "sulcus frontalis superior" EXACT [BIRNLEX:1030] +synonym: "sulcus frontalis superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_frontal_sulcus] +synonym: "superior frontal fissure" EXACT [FMA:83755] +xref: BAMS:sfrs +xref: BAMS:sfs +xref: BIRNLEX:1030 +xref: DHBA:10639 +xref: FMA:83755 +xref: HBA:9356 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=61 {source="BIRNLEX:1030"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=61 +xref: http://en.wikipedia.org/wiki/Superior_frontal_sulcus +xref: http://linkedlifedata.com/resource/umls/id/C0228198 +xref: http://www.snomedbrowser.com/Codes/Details/279342009 +xref: NCIT:C33676 +xref: UMLS:C0228198 {source="BIRNLEX:1030"} +xref: UMLS:C0228198 {source="ncithesaurus:Superior_Frontal_Sulcus"} +is_a: UBERON:0013118 ! sulcus of brain + +[Term] +id: UBERON:0002563 +name: central nucleus of inferior colliculus +synonym: "central cortex of the inferior colliculus" RELATED [BAMS:CIC] +synonym: "central nucleus of the inferior colliculus" RELATED [NeuroNames:479] +synonym: "chief nucleus of inferior colliculus" EXACT [FMA:72413] +synonym: "inferior colliculus central nucleus" RELATED [BAMS:ICc] +synonym: "inferior colliculus, central nucleus" EXACT [FMA:72413] +synonym: "nucleus centralis (colliculi inferioris)" RELATED LATIN [NeuroNames:479] +synonym: "nucleus centralis colliculi inferioris" EXACT LATIN [FMA:72413, FMA:TA] +synonym: "nucleus of inferior colliculus (Crosby)" EXACT [] +xref: BAMS:CIC +xref: BAMS:ICC +xref: BIRNLEX:1035 +xref: BM:MB-Tec-ICC +xref: DHBA:12309 +xref: DMBA:16698 +xref: FMA:72413 +xref: HBA:9104 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=479 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=479 {source="BIRNLEX:1035"} +xref: http://linkedlifedata.com/resource/umls/id/C0175371 +xref: MBA:811 +xref: UMLS:C0175371 {source="BIRNLEX:1035"} +is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum +relationship: part_of UBERON:0001946 ! inferior colliculus + +[Term] +id: UBERON:0002564 +name: lateral orbital gyrus +synonym: "gyrus orbitalis lateralis" RELATED LATIN [NeuroNames:92] +synonym: "gyrus orbitalis longitudinalis externus" RELATED LATIN [NeuroNames:92] +xref: BAMS:LOrG +xref: BIRNLEX:1036 +xref: DHBA:12125 +xref: FMA:62418 +xref: HBA:4059 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=92 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=92 {source="BIRNLEX:1036"} +xref: http://linkedlifedata.com/resource/umls/id/C0262268 +xref: http://www.snomedbrowser.com/Codes/Details/279195001 +xref: UMLS:C0262268 {source="BIRNLEX:1036"} +is_a: UBERON:0007193 ! orbital gyrus +disjoint_from: UBERON:0002570 {source="lexical"} ! medial orbital gyrus + +[Term] +id: UBERON:0002565 +name: olivary pretectal nucleus +def: "Small distinct nucleus in the pretectum of mammals involved in the pupillary light reflect. In rats, it is an olive shaped (anterior) nucleus lying ventral to the brachium of the superior colliculus (Paxinos, The rat nervous system, 2nd ed, 1995, pg. 862). Physiologically, it is identified by neurons sensitive to luminance changes." [BIRNLEX:1037] +subset: pheno_slim +subset: uberon_slim +synonym: "anterior pretectal nucleus" RELATED [FMA:72405] +synonym: "nucleus olivaris colliculi superioris (Fuse)" RELATED LATIN [NeuroNames:472] +synonym: "nucleus olivaris corporis quadrigemini anterioris" RELATED LATIN [NeuroNames:472] +synonym: "nucleus olivaris mesencephali" RELATED LATIN [NeuroNames:472] +synonym: "nucleus olivaris pretectalis of Fuse" RELATED LATIN [NeuroNames:472] +synonym: "nucleus praetectalis anterior" RELATED LATIN [NeuroNames:472] +synonym: "nucleus praetectalis olivaris" EXACT LATIN [ISBN:0471888893] +synonym: "nucleus pretectalis anterior" RELATED LATIN [FMA:72405, FMA:TA] +synonym: "olivary nucleus of superior colliculus" EXACT [FMA:72405] +synonym: "pretectal olivary nucleus" EXACT [FMA:72405] +xref: BAMS:APN +xref: BAMS:APT +xref: BAMS:OP +xref: BAMS:OPT +xref: BAMS:OPt +xref: BIRNLEX:1037 +xref: BM:MB-Tec-OPT +xref: DHBA:12186 +xref: DMBA:16589 +xref: EMAPA:37921 {source="MA:th"} +xref: FMA:72405 +xref: HBA:9086 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=472 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=472 {source="BIRNLEX:1037"} +xref: http://en.wikipedia.org/wiki/Olivary_pretectal_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0175359 +xref: MBA:706 +xref: UMLS:C0175359 {source="BIRNLEX:1037"} +is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum +is_a: UBERON:0014450 ! pretectal nucleus +relationship: contributes_to_morphology_of UBERON:0001944 ! pretectal region +relationship: present_in_taxon NCBITaxon:8293 {source="ISBN:0471888893"} +relationship: present_in_taxon NCBITaxon:9347 {source="ISBN:0471888893"} + +[Term] +id: UBERON:0002566 +name: superior precentral sulcus +synonym: "precentral dimple" EXACT [FMA:83763] +synonym: "SPRS" BROAD ABBREVIATION [BIRNLEX:1038, NIFSTD:NeuroNames_abbrevSource] +synonym: "sulcus praecentralis superior" EXACT [BIRNLEX:1038] +synonym: "sulcus precentralis superior" EXACT [BIRNLEX:1038] +synonym: "superior part of precentral fissure" EXACT [FMA:83763] +synonym: "superior precentral dimple" RELATED [NeuroNames:71] +xref: BAMS:sprs +xref: BIRNLEX:1038 +xref: FMA:83763 +xref: HBA:265505362 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=71 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=71 {source="BIRNLEX:1038"} +xref: http://linkedlifedata.com/resource/umls/id/C0262338 +xref: UMLS:C0262338 {source="BIRNLEX:1038"} +is_a: UBERON:0013118 ! sulcus of brain +relationship: part_of UBERON:0014473 ! precentral fissure of cerebellum + +[Term] +id: UBERON:0002567 +name: basal part of pons +def: "Ventral subdivision of the pons which consists of the massive pontine pertuberance on pontine ventral surface." [FMA:72244] +subset: pheno_slim +synonym: "basal part of the pons" RELATED [NeuroNames:616] +synonym: "basal portion of pons" EXACT [FMA:72244] +synonym: "base of pons" EXACT [FMA:72244] +synonym: "basilar part of pons" EXACT [FMA:72244] +synonym: "basilar pons" RELATED [NeuroNames:616] +synonym: "basis pontis" RELATED LATIN [NeuroNames:616] +synonym: "pars anterior pontis" RELATED LATIN [NeuroNames:616] +synonym: "pars basilaris pontis" EXACT LATIN [FMA:72244, FMA:TA] +synonym: "pars ventralis pontis" RELATED LATIN [NeuroNames:616] +synonym: "pons proper" EXACT [FMA:72244] +synonym: "ventral pons" EXACT [] +synonym: "ventral portion of pons" EXACT [FMA:72244] +xref: BAMS:Bpons +xref: BIRNLEX:1043 +xref: DHBA:12405 +xref: FMA:72244 +xref: HBA:9132 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=616 {source="BIRNLEX:1043"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=616 +xref: http://en.wikipedia.org/wiki/Basilar_part_of_pons +xref: http://linkedlifedata.com/resource/umls/id/C0228427 +xref: http://www.snomedbrowser.com/Codes/Details/361541001 +xref: UMLS:C0228427 {source="BIRNLEX:1043"} +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: has_part UBERON:0002152 ! middle cerebellar peduncle +relationship: part_of UBERON:0000988 ! pons + +[Term] +id: UBERON:0002568 +name: amiculum of dentate nucleus +synonym: "amiculum nuclei dentati" RELATED LATIN [NeuroNames:686] +synonym: "amiculum of the dentate nucleus" RELATED [NeuroNames:686] +synonym: "dentate nuclear amiculum" EXACT [FMA:72546] +xref: BAMS:amdt +xref: BIRNLEX:1044 +xref: FMA:72546 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=686 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=686 {source="BIRNLEX:1044"} +xref: http://linkedlifedata.com/resource/umls/id/C0175487 +xref: UMLS:C0175487 {source="BIRNLEX:1044"} +is_a: UBERON:0019291 ! white matter of metencephalon +is_a: UBERON:0035939 {source="FMA"} ! amiculum +relationship: part_of UBERON:0002132 ! dentate nucleus + +[Term] +id: UBERON:0002569 +name: transverse temporal sulcus +synonym: "sulci temporales transversi" RELATED LATIN [NeuroNames:128] +synonym: "transverse temporal sulci" RELATED PLURAL [] +xref: BAMS:tts +xref: BIRNLEX:1045 +xref: DHBA:146034852 +xref: FMA:83782 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=128 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=128 {source="BIRNLEX:1045"} +xref: http://linkedlifedata.com/resource/umls/id/C0228239 +xref: http://www.snomedbrowser.com/Codes/Details/42387003 +xref: UMLS:C0228239 {source="BIRNLEX:1045"} +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus +is_a: UBERON:0014687 ! temporal sulcus + +[Term] +id: UBERON:0002570 +name: medial orbital gyrus +synonym: "gyrus orbitalis longitudinalis internus" RELATED LATIN [NeuroNames:93] +synonym: "gyrus orbitalis medialis" RELATED LATIN [NeuroNames:93] +synonym: "gyrus orbitalis medius" RELATED LATIN [NeuroNames:93] +xref: BAMS:MOrG +xref: BIRNLEX:1046 +xref: DHBA:12122 +xref: FMA:62419 +xref: HBA:4050 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=93 {source="BIRNLEX:1046"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=93 +xref: http://linkedlifedata.com/resource/umls/id/C0175179 +xref: http://www.snomedbrowser.com/Codes/Details/279194002 +xref: UMLS:C0175179 {source="BIRNLEX:1046"} +is_a: UBERON:0007193 ! orbital gyrus + +[Term] +id: UBERON:0002571 +name: external nucleus of inferior colliculus +synonym: "external cortex of the inferior colliculus" RELATED [NeuroNames:478] +synonym: "external nucleus of the inferior colliculus" RELATED [NeuroNames:478] +synonym: "inferior colliculus, external nucleus" RELATED [NeuroNames:478] +synonym: "nucleus externus (colliculi inferioris)" RELATED LATIN [NeuroNames:478] +synonym: "nucleus externus colliculi inferioris" EXACT LATIN [FMA:72412, FMA:TA] +synonym: "nucleus lateralis colliculi inferioris" EXACT LATIN [FMA:72412, FMA:TA] +xref: BAMS:EIC +xref: BAMS:ICe +xref: BIRNLEX:1047 +xref: BM:MB-Tec-ICX +xref: DHBA:12308 +xref: FMA:72412 +xref: HBA:9105 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=478 {source="BIRNLEX:1047"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=478 +xref: http://linkedlifedata.com/resource/umls/id/C0175370 +xref: MBA:828 +xref: UMLS:C0175370 {source="BIRNLEX:1047"} +is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum +relationship: part_of UBERON:0001946 ! inferior colliculus + +[Term] +id: UBERON:0002572 +name: principal pretectal nucleus +synonym: "nucleus pretectalis principalis" RELATED LATIN [NeuroNames:469] +xref: BAMS:PPt +xref: BIRNLEX:1048 +xref: DMBA:16586 +xref: FMA:72402 +xref: HBA:9089 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=469 {source="BIRNLEX:1048"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=469 +xref: http://linkedlifedata.com/resource/umls/id/C0175355 +xref: UMLS:C0175355 {source="BIRNLEX:1048"} +is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum +is_a: UBERON:0014450 ! pretectal nucleus + +[Term] +id: UBERON:0002573 +name: pontine reticular formation +def: "The reticular formation is a part of the brain that is involved in actions such as awaking/sleeping cycle, and filtering incoming stimuli to discriminate irrelevant background stimuli. It is essential for governing some of the basic functions of higher organisms, and is one of the phylogenetically oldest portions of the brain. [WP,unvetted]." [http://en.wikipedia.org/wiki/Pontine_reticular_formation] +subset: uberon_slim +synonym: "formatio reticularis pontis" RELATED LATIN [NeuroNames:561] +synonym: "pons of varolius reticular formation" EXACT [OBOL:automatic] +synonym: "pons reticular formation" EXACT [OBOL:automatic] +synonym: "pontine reticular nucleus" EXACT [ABA:PRNr] +synonym: "pontine reticular nucleus rostral part" RELATED [BAMS:PRNr] +synonym: "reticular formation of pons" EXACT [FMA:68876] +synonym: "reticular formation of pons of varolius" EXACT [OBOL:automatic] +xref: BAMS:PRF +xref: BAMS:PRN +xref: BAMS:PRNr +xref: BAMS:RET-PONS +xref: BIRNLEX:1050 +xref: BM:Pons-PRF +xref: DHBA:12480 +xref: EMAPA:35693 +xref: FMA:68876 +xref: HBA:9161 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=561 {source="BIRNLEX:1050"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=561 +xref: http://en.wikipedia.org/wiki/Pontine_reticular_formation +xref: http://linkedlifedata.com/resource/umls/id/C0228428 +xref: http://www.snomedbrowser.com/Codes/Details/362403007 +xref: UMLS:C0228428 {source="BIRNLEX:1050"} +is_a: UBERON:0007245 ! nuclear complex of neuraxis +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: part_of UBERON:0002275 ! reticular formation +relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum + +[Term] +id: UBERON:0002574 +name: obsolete regional part of inferior olivary complex +def: "A regional part of brain that is part of a inferior olivary complex [Automatically generated definition]." [OBOL:automatic] +subset: non_informative +synonym: "inferior olivary complex segment" EXACT [FMA:71259] +synonym: "segment of inferior olivary complex" EXACT [BIRNLEX:1052] +is_obsolete: true +consider: BIRNLEX:1052 +consider: FMA:71259 + +[Term] +id: UBERON:0002575 +name: posterior orbital gyrus +xref: BAMS:POrG +xref: BIRNLEX:1054 +xref: FMA:80184 +xref: HBA:4056 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=6 +xref: http://linkedlifedata.com/resource/umls/id/C0458323 +xref: http://www.snomedbrowser.com/Codes/Details/279197009 +xref: OldNeuroNames:-1761421113 {source="BIRNLEX:1054"} +xref: UMLS:C0458323 {source="BIRNLEX:1054"} +is_a: UBERON:0007193 ! orbital gyrus +disjoint_from: UBERON:0022244 {source="lexical"} ! anterior orbital gyrus + +[Term] +id: UBERON:0002576 +name: temporal pole +def: "Anterior component of the temporal lobe (rostral boundary) extends caudally to the entorhinal cortex. The medial and lateral boundaries are the medial aspect of the temporal lobe and the superior or inferior temporal sulci, respectively (Christine Fennema-Notestine)." [BIRNLEX:1055] +subset: uberon_slim +synonym: "polus temporalis" EXACT LATIN [NeuroNames:126] +synonym: "temporal pole, cerebral cortex" RELATED [NeuroNames:126] +synonym: "temporopolar cortex" RELATED [BIRNLEX:1055] +xref: BAMS:TmP +xref: BAMS:tmp +xref: BIRNLEX:1055 +xref: DHBA:12146 +xref: FMA:74890 +xref: HBA:4174 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=126 {source="BIRNLEX:1055"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=126 +xref: http://www.snomedbrowser.com/Codes/Details/314155002 +xref: Temporal:pole +is_a: UBERON:0009899 ! pole of cerebral hemisphere +intersection_of: UBERON:0009899 ! pole of cerebral hemisphere +intersection_of: part_of UBERON:0001871 ! temporal lobe +relationship: part_of UBERON:0001871 ! temporal lobe + +[Term] +id: UBERON:0002577 +name: pericentral nucleus of inferior colliculus +synonym: "cortex of inferior colliculus" EXACT [FMA:72411] +synonym: "dorsal cortex of the inferior colliculus" RELATED [NeuroNames:477] +synonym: "inferior colliculus, dorsal nucleus" RELATED [NeuroNames:477] +synonym: "nucleus pericentralis (colliculi inferioris)" RELATED LATIN [NeuroNames:477] +synonym: "nucleus pericentralis colliculi inferioris" EXACT LATIN [FMA:72411, FMA:TA] +synonym: "pericentral nucleus of the inferior colliculus" RELATED [NeuroNames:477] +xref: BAMS:ICP +xref: BAMS:PCIC +xref: BIRNLEX:1056 +xref: BM:MB-Tec-ICP +xref: DHBA:12306 +xref: FMA:72411 +xref: HBA:9106 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=477 {source="BIRNLEX:1056"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=477 +xref: http://linkedlifedata.com/resource/umls/id/C0175369 +xref: MBA:820 +xref: UMLS:C0175369 {source="BIRNLEX:1056"} +is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum +relationship: part_of UBERON:0001946 ! inferior colliculus + +[Term] +id: UBERON:0002578 +name: sublentiform nucleus +synonym: "nucleus sublentiformis" EXACT LATIN [NeuroNames:471] +xref: BAMS:SLn +xref: BIRNLEX:1057 {notes="retired in NIFSTD present in neurlex"} +xref: FMA:72404 +xref: HBA:9092 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=471 +is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum +is_a: UBERON:0014450 ! pretectal nucleus + +[Term] +id: UBERON:0002579 +name: obsolete regional part of medullary reticular formation +def: "A regional part of brain that is part of a medullary reticular formation [Automatically generated definition]." [OBOL:automatic] +subset: non_informative +synonym: "medullary reticular formation segment" EXACT [FMA:73730] +synonym: "segment of medullary reticular formation" EXACT [BIRNLEX:1060] +is_obsolete: true +consider: BIRNLEX:1060 +consider: FMA:73730 + +[Term] +id: UBERON:0002580 +name: brachium of superior colliculus +def: "Bundle of fibers that passes over the medial geniculate nucleus (in humans) to reach the superior colliculus. Contains afferents from the retina." [BIRNLEX:1065] +subset: uberon_slim +synonym: "brachium colliculi cranialis" RELATED LATIN [NeuroNames:474] +synonym: "brachium colliculi rostralis" RELATED LATIN [NeuroNames:474] +synonym: "brachium colliculi superioris" RELATED LATIN [http://en.wikipedia.org/wiki/Brachium_of_superior_colliculus] +synonym: "brachium of the superior colliculus" RELATED [NeuroNames:474] +synonym: "brachium quadrigeminum superius" RELATED LATIN [NeuroNames:474] +synonym: "superior brachium" EXACT [FMA:72417] +synonym: "superior collicular brachium" EXACT [FMA:72417] +synonym: "superior colliculus brachium" EXACT [FMA:72417] +synonym: "superior quadrigeminal brachium" EXACT [FMA:72417] +xref: BAMS:bsc +xref: BIRNLEX:1065 +xref: BM:MB-BSC +xref: DHBA:12328 +xref: FMA:72417 +xref: HBA:265505398 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=474 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=474 {source="BIRNLEX:1065"} +xref: http://en.wikipedia.org/wiki/Brachium_of_superior_colliculus +xref: http://linkedlifedata.com/resource/umls/id/C0175368 +xref: MBA:916 +xref: UMLS:C0175368 {source="BIRNLEX:1065"} +is_a: UBERON:0000122 ! neuron projection bundle +is_a: UBERON:0011215 ! central nervous system cell part cluster +relationship: part_of UBERON:0006786 ! white matter of superior colliculus + +[Term] +id: UBERON:0002581 +name: postcentral gyrus +def: "Component of the parietal lobe. The appearance and disappearance of the central sulcus were the rostral and caudal boundaries of the postcentral gyrus respectively. The medial and lateral boundaries were the lateral bank of the precentral gyrus and the lateral fissure and/or the medial bank of the superior parietal gyrus respectively (Christine Fennema-Notestine)." [BIRNLEX:1070] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "gyrus centralis posterior" RELATED LATIN [NeuroNames:105] +synonym: "gyrus postcentralis" EXACT LATIN [NeuroNames:105] +synonym: "post central gyrus" RELATED [NeuroNames:105] +synonym: "postcentral convolution" EXACT [FMA:61896] +synonym: "posterior central gyrus" EXACT [FMA:61896] +synonym: "postrolandic gyrus" EXACT [FMA:61896] +synonym: "somatosensory cortex" RELATED [http://en.wikipedia.org/wiki/Postcentral_gyrus] +xref: BAMS:PoG +xref: BIRNLEX:1070 +xref: BTO:0004354 +xref: DHBA:12132 +xref: EFO:0001383 +xref: FMA:61896 +xref: HBA:4085 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=105 {source="BIRNLEX:1070"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=105 +xref: http://linkedlifedata.com/resource/umls/id/C0152302 +xref: http://www.snomedbrowser.com/Codes/Details/279167001 +xref: NCIT:C33346 +xref: Postcentral:gyrus +xref: UMLS:C0152302 {source="ncithesaurus:Postcentral_Gyrus"} +xref: UMLS:C0152302 {source="BIRNLEX:1070"} +is_a: UBERON:0000200 ! gyrus +relationship: contributes_to_morphology_of UBERON:0001872 ! parietal lobe +relationship: part_of UBERON:0001872 ! parietal lobe + +[Term] +id: UBERON:0002582 +name: anterior calcarine sulcus +synonym: "ACCS" BROAD ABBREVIATION [BIRNLEX:1072, NIFSTD:NeuroNames_abbrevSource] +synonym: "anterior calcarine fissure" EXACT [FMA:83750] +synonym: "sulcus calcarinus anterior" EXACT [BIRNLEX:1072] +xref: BAMS:accs +xref: BAMS:acs +xref: BIRNLEX:1072 +xref: FMA:83750 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=45 {source="BIRNLEX:1072"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=45 +xref: http://linkedlifedata.com/resource/umls/id/C0262187 +xref: UMLS:C0262187 {source="BIRNLEX:1072"} +is_a: UBERON:0013118 ! sulcus of brain +disjoint_from: UBERON:0002901 {source="lexical"} ! posterior calcarine sulcus + +[Term] +id: UBERON:0002583 +name: commissure of superior colliculus +def: "A commissure that is part of a superior colliculus [Automatically generated definition]." [OBOL:automatic] +subset: vertebrate_core +synonym: "anterior colliculus commissure" EXACT [OBOL:automatic] +synonym: "anterior corpus quadrigeminum commissure" EXACT [OBOL:automatic] +synonym: "commissura colliculi superior" RELATED LATIN [NeuroNames:475] +synonym: "commissura colliculi superioris" RELATED LATIN [NeuroNames:475] +synonym: "commissura colliculorum cranialium" RELATED LATIN [NeuroNames:475] +synonym: "commissura colliculorum rostralium" RELATED LATIN [NeuroNames:475] +synonym: "commissura colliculorum superiorum" RELATED LATIN [NeuroNames:475] +synonym: "commissure of anterior colliculus" EXACT [OBOL:automatic] +synonym: "commissure of anterior corpus quadrigeminum" EXACT [OBOL:automatic] +synonym: "commissure of cranial colliculus" EXACT [OBOL:automatic] +synonym: "commissure of optic tectum" EXACT [OBOL:automatic] +synonym: "commissure of superior colliculi" EXACT [FMA:72418] +synonym: "commissure of the superior colliculi" RELATED [BAMS:SCC] +synonym: "commissure of the superior colliculi" RELATED [BAMS:csc] +synonym: "commissure of the superior colliculus" RELATED [NeuroNames:475] +synonym: "cranial colliculus commissure" EXACT [OBOL:automatic] +synonym: "intertectal commissure" EXACT SENSU [ZFA:0000684] +synonym: "optic tectum commissure" EXACT [OBOL:automatic] +synonym: "superior colliculus commissure" EXACT [FMA:72418] +xref: BAMS:csc +xref: BAMS:SCC +xref: BIRNLEX:1073 +xref: BM:MB-Tec-SC-SCX +xref: FMA:72418 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=475 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=475 {source="BIRNLEX:1073"} +xref: http://linkedlifedata.com/resource/umls/id/C0152366 +xref: http://www.snomedbrowser.com/Codes/Details/369258008 +xref: MBA:336 +xref: TAO:0000684 +xref: UMLS:C0152366 {source="BIRNLEX:1073"} +xref: ZFA:0000684 +is_a: UBERON:0005970 ! brain commissure +intersection_of: UBERON:0001020 ! nervous system commissure +intersection_of: part_of UBERON:0001945 ! superior colliculus +disjoint_from: UBERON:0003028 {source="lexical"} ! commissure of inferior colliculus +relationship: part_of UBERON:0006786 {source="NIFSTD-modified"} ! white matter of superior colliculus + +[Term] +id: UBERON:0002584 +name: obsolete regional part of vestibular nuclear complex +def: "A regional part of brain that is part of a vestibular nuclear complex [Automatically generated definition]." [OBOL:automatic] +subset: non_informative +synonym: "segment of vestibular nuclear complex" EXACT [BIRNLEX:1080] +synonym: "vestibular nuclear complex segment" EXACT [FMA:71267] +is_obsolete: true +consider: BIRNLEX:1080 +consider: FMA:71267 + +[Term] +id: UBERON:0002585 +name: central tegmental tract of midbrain +synonym: "central tegmental tract of the midbrain" RELATED [NeuroNames:528] +synonym: "CTGMB" BROAD ABBREVIATION [BIRNLEX:1081, NIFSTD:NeuroNames_abbrevSource] +synonym: "tractus tegmentalis centralis (mesencephali)" RELATED LATIN [NeuroNames:528] +xref: BAMS:ctgmb +xref: BIRNLEX:1081 +xref: FMA:72456 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=528 {source="BIRNLEX:1081"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=528 +xref: http://linkedlifedata.com/resource/umls/id/C0152364 +xref: http://www.snomedbrowser.com/Codes/Details/369243000 +xref: UMLS:C0152364 {source="BIRNLEX:1081"} +is_a: UBERON:0007702 ! tract of brain +relationship: part_of UBERON:0001943 ! midbrain tegmentum +relationship: part_of UBERON:0009643 ! central tegmental tract + +[Term] +id: UBERON:0002586 +name: calcarine sulcus +def: "The calcarine fissure is an anatomical landmark located at the caudal end of the medial surface of the brain. [WP,unvetted]." [http://en.wikipedia.org/wiki/Calcarine_sulcus] +subset: uberon_slim +synonym: "calcarine fissure" EXACT [FMA:83749] +synonym: "CCS" BROAD ABBREVIATION [BIRNLEX:1086, NIFSTD:NeuroNames_abbrevSource] +synonym: "fissura calcarina" RELATED LATIN [NeuroNames:44] +synonym: "sulcus calcarinus" EXACT [BIRNLEX:1086] +xref: BIRNLEX:1086 +xref: BM:Tel-Cx-CAS +xref: Calcarine:sulcus +xref: DHBA:10612 +xref: FMA:83749 +xref: HBA:9391 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=44 {source="BIRNLEX:1086"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=44 +xref: http://linkedlifedata.com/resource/umls/id/C0228224 +xref: http://www.snomedbrowser.com/Codes/Details/279355005 +xref: NCIT:C32252 +xref: UMLS:C0228224 {source="BIRNLEX:1086"} +xref: UMLS:C0228224 {source="ncithesaurus:Calcarine_Sulcus"} +is_a: UBERON:0013118 ! sulcus of brain +relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex + +[Term] +id: UBERON:0002587 +name: nucleus subceruleus +synonym: "nucleus subcaeruleus" EXACT LATIN [FMA:72479, FMA:TA] +synonym: "nucleus subcoeruleus" RELATED [BAMS:SLC] +synonym: "subcaerulean nucleus" EXACT [FMA:72479] +synonym: "subceruleus nucleus" EXACT [] +synonym: "subcoeruleus nucleus" EXACT [] +xref: BAMS:SLC +xref: BAMS:SubC +xref: BIRNLEX:1088 +xref: DHBA:12500 +xref: FMA:72479 +xref: HBA:9154 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=584 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=584 {source="BIRNLEX:1088"} +xref: http://linkedlifedata.com/resource/umls/id/C0175441 +xref: MBA:350 +xref: UMLS:C0175441 {source="BIRNLEX:1088"} +is_a: UBERON:0002308 ! nucleus of brain + +[Term] +id: UBERON:0002588 +name: decussation of superior cerebellar peduncle +alt_id: UBERON:0003032 +def: "Regional part of superior cerebellar peduncle located in the caudal midbrain, at the level of the inferior colliculus, consisting of a large bundle of fibers crossing the midline. It contains fibers projecting from the deep cerebellar nucleus to the midbrain and thalamus through the superior cerebellar peduncle (MM). The decussation of superior cerebellar peduncle is the portion of the superior cerebellar peduncle which crosses into the midbrain. [WP,unvetted]." [BIRNLEX:1089, http://en.wikipedia.org/wiki/Decussation_of_superior_cerebellar_peduncle] +subset: uberon_slim +synonym: "decussatio brachii conjunctivi" RELATED LATIN [NeuroNames:527] +synonym: "decussatio crurorum cerebello-cerebralium" RELATED LATIN [NeuroNames:527] +synonym: "decussatio pedunculorum cerebellarium superiorum" EXACT LATIN [FMA:72455, FMA:TA] +synonym: "decussation of brachium conjunctivum" EXACT [FMA:72455] +synonym: "decussation of superior cerebellar peduncles" EXACT [FMA:72455] +synonym: "decussation of the superior cerebellar peduncle" RELATED [NeuroNames:527] +synonym: "decussation of the superior cerebellar peduncle (Wernekinck)" RELATED [NeuroNames:527] +synonym: "descussation of the scp" RELATED [BAMS:dscp] +synonym: "superior cerebellar peduncle decussation" EXACT [FMA:72455] +synonym: "Wernekink's decussation" EXACT [FMA:72455] +xref: BAMS:dscp +xref: BAMS:xscp +xref: BIRNLEX:1089 +xref: BM:BCX +xref: DHBA:12337 +xref: FMA:72455 +xref: HBA:265505482 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=527 {source="BIRNLEX:1089"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=527 +xref: http://en.wikipedia.org/wiki/Decussation_of_superior_cerebellar_peduncle +xref: http://linkedlifedata.com/resource/umls/id/C0152374 +xref: http://www.snomedbrowser.com/Codes/Details/369252009 +xref: MBA:812 +xref: UMLS:C0152374 {source="BIRNLEX:1089"} +is_a: UBERON:0007418 ! neural decussation +intersection_of: UBERON:0007418 ! neural decussation +intersection_of: part_of UBERON:0002150 ! superior cerebellar peduncle +relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum +relationship: part_of UBERON:0002150 ! superior cerebellar peduncle + +[Term] +id: UBERON:0002589 +name: lateral corticospinal tract +def: "Part of the corticospinal tract located in the spinal cord, formed as 75 to 90% of the corticospinal fibers cross to the opposite side of the brainstem in the pyramidal decussation. This tract descends the length of the spinal cord in the lateral white column (Adapted from Brain Info)" [BIRNLEX:1095] +subset: pheno_slim +subset: uberon_slim +synonym: "corticospinal tract, crossed" EXACT [MBA:1019] +synonym: "corticospinal tract, crossed" RELATED [NeuroNames:2954] +synonym: "crossed corticospinal tract" RELATED [NeuroNames:2954] +synonym: "crossed pyramidal tract" EXACT [] +synonym: "fasciculus cerebrospinalis lateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_corticospinal_tract] +synonym: "lateral corticospinal tract" RELATED [NeuroNames:2954] +synonym: "lateral corticospinal tract of the medulla" RELATED [NeuroNames:801] +synonym: "lateral pyramidal tract" EXACT [FMA:72635] +synonym: "pyramidal tract, crossed" EXACT [BAMS:py] +synonym: "tractus corticospinalis (pyramidalis) lateralis" RELATED LATIN [NeuroNames:801] +synonym: "tractus corticospinalis lateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_corticospinal_tract] +xref: BAMS:lcsp +xref: BAMS:py +xref: BIRNLEX:1095 +xref: DHBA:12759 +xref: EMAPA:37888 {source="MA:th"} +xref: FMA:72635 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=801 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=801 {source="BIRNLEX:1095"} +xref: http://en.wikipedia.org/wiki/Lateral_corticospinal_tract +xref: http://linkedlifedata.com/resource/umls/id/C0152402 +xref: http://www.snomedbrowser.com/Codes/Details/369091005 +xref: MBA:1019 +xref: NCIT:C32406 +xref: UMLS:C0152402 {source="BIRNLEX:1095"} +is_a: UBERON:0007702 {source="FMA"} ! tract of brain +relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata +relationship: part_of UBERON:0002707 {source="NIFSTD"} ! corticospinal tract + +[Term] +id: UBERON:0002590 +name: prepyriform area +def: "Prepyriform area (or prepiriform cortex) is a portion of the rhinencephalon consisting of paleocortex. Some sources state that it is part of the primary olfactory cortex." [http://en.wikipedia.org/wiki/Prepyriform_area] +synonym: "(pre-)piriform cortex" EXACT [BIRNLEX:1097] +synonym: "area prepiriformis" RELATED LATIN [NeuroNames:165] +synonym: "eupalaeocortex" RELATED LATIN [NeuroNames:165] +synonym: "gyrus olfactorius lateralis" EXACT LATIN [FMA:62484, FMA:TA] +synonym: "lateral olfactory gyrus" EXACT [FMA:62484] +synonym: "palaeocortex II" RELATED LATIN [NeuroNames:165] +synonym: "piriform cortex (price)" EXACT [] +synonym: "piriform olfactory cortex" EXACT [BIRNLEX:1097] +synonym: "prepiriform cortex" EXACT [FMA:62484] +synonym: "prepiriform region" RELATED [DHBA:266441677] +synonym: "prepyriform cortex" EXACT [FMA:62484] +synonym: "pyriform area" EXACT [BIRNLEX:1097] +synonym: "regio praepiriformis" RELATED LATIN [NeuroNames:165] +xref: BIRNLEX:1097 +xref: BM:Tel-PRP +xref: DHBA:13229 +xref: DHBA:266441677 +xref: FMA:62484 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=165 {source="BIRNLEX:1097"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=165 +xref: http://linkedlifedata.com/resource/umls/id/C0228280 +xref: http://www.snomedbrowser.com/Codes/Details/369104008 +xref: MBA:961 +xref: Prepyriform:area +xref: UMLS:C0228280 {source="BIRNLEX:1097"} +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +disjoint_from: UBERON:0002599 {source="lexical"} ! medial olfactory gyrus +relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex + +[Term] +id: UBERON:0002591 +name: oral part of spinal trigeminal nucleus +synonym: "nucleus oralis tractus spinalis nervi trigemini" RELATED LATIN [NeuroNames:835] +synonym: "nucleus spinalis nervi trigemini, pars oralis" RELATED LATIN [NeuroNames:835] +synonym: "oral part of the spinal trigeminal nucleus" RELATED [NeuroNames:835] +synonym: "spinal nucleus of the trigeminal oral part" RELATED [BAMS:SPVO] +synonym: "spinal nucleus of the trigeminal, oral part" RELATED [NeuroNames:835] +synonym: "spinal trigeminal nucleus oral part" RELATED [BAMS:Sp5O] +synonym: "spinal trigeminal nucleus, oral part" RELATED [NeuroNames:835] +xref: BAMS:OSp5 +xref: BAMS:Sp5O +xref: BAMS:SPVO +xref: BIRNLEX:1100 +xref: FMA:235322 +xref: HBA:9679 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=835 {source="BIRNLEX:1100"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=835 +xref: http://linkedlifedata.com/resource/umls/id/C0175417 +xref: MBA:445 +xref: UMLS:C0175417 {source="BIRNLEX:1100"} +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve + +[Term] +id: UBERON:0002592 +name: juxtarestiform body +def: "Fibers interconnecting the cerebellum and vestibular nuclei, traveling medial to the restiform body (inferior cerebellar peduncle) (Nolte, The Human Brain, 6th ed., pg 497)" [BIRNLEX:1101] +subset: uberon_slim +synonym: "corpus juxtarestiforme" RELATED LATIN [NeuroNames:779] +xref: BAMS:jrb +xref: BAMS:jx +xref: BIRNLEX:1101 +xref: DHBA:12750 +xref: FMA:72613 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=779 {source="BIRNLEX:1101"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=779 +xref: http://linkedlifedata.com/resource/umls/id/C0152394 +xref: http://www.snomedbrowser.com/Codes/Details/110687007 +xref: Juxtarestiform:body +xref: MBA:650 +xref: UMLS:C0152394 {source="BIRNLEX:1101"} +is_a: UBERON:0014649 ! white matter of medulla oblongata +relationship: part_of UBERON:0002163 {source="NIFSTD"} ! inferior cerebellar peduncle + +[Term] +id: UBERON:0002593 +name: orbital operculum +synonym: "frontal core" RELATED [NeuroNames:2394] +synonym: "gigantopyramidal area 4" RELATED [NeuroNames:2394] +synonym: "operculum orbitale" EXACT LATIN [FMA:74887, FMA:TA] +synonym: "pars orbitalis of frontal operculum (Ono)" EXACT LATIN [FMA:74887, FMA:TA] +synonym: "precentral gigantopyramidal field" RELATED [NeuroNames:2394] +xref: BAMS:oro +xref: BIRNLEX:1102 +xref: DHBA:12128 +xref: FMA:74887 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2394 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2394 {source="BIRNLEX:1102"} +xref: http://linkedlifedata.com/resource/umls/id/C0694580 +xref: UMLS:C0694580 {source="BIRNLEX:1102"} +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0010262 ! operculum of brain + +[Term] +id: UBERON:0002594 +name: dentatothalamic tract +def: "The dentatothalamic tract (or dentatorubrothalamic tract) is a tract which connects the dentate nucleus and the thalamus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Dentatothalamic_tract] +subset: uberon_slim +synonym: "dentatothalamic fibers" EXACT [FMA:72462] +synonym: "DT" BROAD ABBREVIATION [BIRNLEX:1104, NIFSTD:NeuroNames_abbrevSource] +synonym: "tractus dentatothalamicus" RELATED LATIN [http://en.wikipedia.org/wiki/Dentatothalamic_tract] +xref: BAMS:dt +xref: BIRNLEX:1104 +xref: Dentatothalamic:tract +xref: DHBA:12357 +xref: FMA:72462 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=534 {source="BIRNLEX:1104"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=534 +xref: http://linkedlifedata.com/resource/umls/id/C0175411 +xref: UMLS:C0175411 {source="BIRNLEX:1104"} +is_a: UBERON:0007702 ! tract of brain +relationship: part_of UBERON:0001943 ! midbrain tegmentum + +[Term] +id: UBERON:0002595 +name: orbital sulcus +def: "The inferior or orbital surface of the frontal lobe is concave, and rests on the orbital plate of the frontal bone. It is divided into four orbital gyri by a well-marked H-shaped orbital sulcus" [http://en.wikipedia.org/wiki/Orbital_sulcus] +synonym: "cruciate sulcus of campbell" EXACT [BIRNLEX:1112] +synonym: "orbital sulci" EXACT PLURAL [FMA:83770] +synonym: "ORBS" BROAD ABBREVIATION [BIRNLEX:1112, NIFSTD:NeuroNames_abbrevSource] +synonym: "sulci orbitales" RELATED LATIN [NeuroNames:79] +synonym: "sulci orbitalis" EXACT LATIN [] +synonym: "sulcus orbitalis" EXACT [BIRNLEX:1112] +xref: BAMS:orbs +xref: BAMS:ors +xref: BIRNLEX:1112 +xref: BM:Tel-Cx-ORS +xref: DHBA:10625 +xref: FMA:83770 +xref: HBA:9360 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=79 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=79 {source="BIRNLEX:1112"} +xref: http://linkedlifedata.com/resource/umls/id/C0228206 +xref: http://www.snomedbrowser.com/Codes/Details/314143008 +xref: NCIT:C33222 +xref: Orbital:sulcus +xref: UMLS:C0228206 {source="ncithesaurus:Orbital_Sulcus"} +xref: UMLS:C0228206 {source="BIRNLEX:1112"} +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus +relationship: part_of UBERON:0016525 ! frontal lobe + +[Term] +id: UBERON:0002596 +name: ventral posterior nucleus of thalamus +def: "Part of thalamus receiving primary somatic sensory information via the medial lemniscal pathway that projects to the primary somatosensory cortex (adapted from Paxinos, The Rat Nervous System, 2nd Ed, Academic Press, 1995)." [BIRNLEX:1116] +subset: uberon_slim +synonym: "nuclei ventrales posteriores" RELATED LATIN [NeuroNames:343] +synonym: "nucleus ventrales posteriores" EXACT [BIRNLEX:1116] +synonym: "nucleus ventralis posterior" EXACT [BIRNLEX:1116] +synonym: "ventral posterior" RELATED [BAMS:VP] +synonym: "ventral posterior complex of the thalamus" RELATED [ABA:VP, BAMS:VP] +synonym: "ventral posterior nucleus" EXACT [FMA:62187] +synonym: "ventral posterior thalamic nucleus" EXACT [FMA:62187] +synonym: "ventrobasal complex" EXACT [FMA:62187] +synonym: "ventrobasal nucleus" EXACT [FMA:62187] +synonym: "ventroposterior inferior nucleus" RELATED [BTO:0004374] +synonym: "ventroposterior nucleus" RELATED [BTO:0004373] +synonym: "ventroposterior nucleus of thalamus" RELATED [BAMS:VP] +synonym: "VP" BROAD ABBREVIATION [BIRNLEX:1116, NIFSTD:NeuroNames_abbrevSource] +synonym: "VPN" RELATED [BTO:0004373] +xref: BAMS:VP +xref: BIRNLEX:1116 +xref: BM:Die-Th-VPI +xref: BTO:0004373 +xref: BTO:0004374 +xref: DHBA:10423 +xref: DHBA:10426 +xref: EMAPA:35912 +xref: EV:0100209 +xref: FMA:62187 +xref: HBA:4426 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=343 {source="BIRNLEX:1116"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=343 +xref: http://en.wikipedia.org/wiki/Ventral_posterior_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0175276 +xref: http://www.snomedbrowser.com/Codes/Details/279147005 +xref: MA:0000867 +xref: MBA:709 +xref: UMLS:C0175276 {source="BIRNLEX:1116"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0002776 {source="FMA"} ! ventral nuclear group + +[Term] +id: UBERON:0002597 +name: principal sensory nucleus of trigeminal nerve +def: "The principal sensory nucleus (or chief sensory nucleus of V) is a group of second order neurons which have cell bodies in the dorsal Pons. It receives information about discriminative sensation and light touch of the face as well as conscious proprioception of the jaw via first order neurons of CN V. Most of the sensory information crosses the midline and travels to the contralateral ventral posteriomedial (VPM) of the thalamus via the Ventral Trigeminothalamic Tract, but information of the oral cavity travels to the ipsilateral Ventral Posteriomedial (VPM) of the thalamus via the Dorsal Trigeminothalamic Tract. [WP,unvetted]." [GO:0021730, http://en.wikipedia.org/wiki/Chief_sensory_nucleus] +comment: GO has pontine nucleus as a child of trigeminal sensory nucleus, WP says this is a synonym, but we have a separate class for this - UBERON:0002151 +subset: uberon_slim +synonym: "chief sensory nucleus" EXACT [FMA:54533] +synonym: "chief sensory trigeminal nucleus" RELATED [NeuroNames:560] +synonym: "chief trigeminal sensory nucleus" RELATED [NeuroNames:560] +synonym: "main sensory nucleus" EXACT [FMA:54533] +synonym: "main sensory nucleus of cranial nerve v" EXACT [] +synonym: "nucleus pontinus nervi trigeminalis" RELATED LATIN [NeuroNames:560] +synonym: "nucleus pontinus nervi trigemini" RELATED LATIN [NeuroNames:560] +synonym: "nucleus principalis nervi trigemini" RELATED LATIN [NeuroNames:560] +synonym: "nucleus sensibilis superior nervi trigemini" RELATED LATIN [NeuroNames:560] +synonym: "nucleus sensorius principalis nervi trigemini" RELATED LATIN [NeuroNames:560] +synonym: "nucleus sensorius superior nervi trigemini" RELATED LATIN [NeuroNames:560] +synonym: "pontine nucleus" RELATED INCONSISTENT [GO:0021740, http://en.wikipedia.org/wiki/Trigeminal_nuclei] +synonym: "pontine nucleus of the trigeminal nerve" RELATED [NeuroNames:560] +synonym: "primary nucleus of the trigeminal nerve" RELATED [NeuroNames:560] +synonym: "principal sensory nucleus" EXACT [] +synonym: "principal sensory nucleus of the trigeminal" RELATED [NeuroNames:560] +synonym: "principal sensory nucleus of the trigeminal nerve" RELATED [NeuroNames:560] +synonym: "principal sensory nucleus of trigeminal nerve" EXACT [FMA:54533] +synonym: "principal sensory trigeminal nucleus" EXACT [FMA:54533] +synonym: "principal trigeminal nucleus" EXACT [FMA:54533] +synonym: "superior trigeminal nucleus" EXACT [FMA:54533] +synonym: "superior trigeminal sensory nucleus" EXACT [FMA:54533] +synonym: "trigeminal nerve superior sensory nucleus" EXACT [FMA:54533] +synonym: "trigeminal V chief sensory nucleus" EXACT [MA:0002740] +synonym: "trigeminal V principal sensory nucleus" EXACT [MA:0002740] +xref: BAMS:Pr5 +xref: BAMS:PSV +xref: BIRNLEX:1120 +xref: BM:VP +xref: DHBA:12444 +xref: EHDAA2:0004628 +xref: EMAPA:37773 {source="MA:th"} +xref: EV:0100274 +xref: FMA:54533 +xref: HBA:9207 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=560 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=560 {source="BIRNLEX:1120"} +xref: http://en.wikipedia.org/wiki/Chief_sensory_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0228701 +xref: http://www.snomedbrowser.com/Codes/Details/369031008 +xref: MA:0002740 +xref: MBA:7 +xref: NCIT:C33402 +xref: UMLS:C0228701 {source="ncithesaurus:Principal_Sensory_Nucleus_of_the_Trigeminal_Nerve"} +xref: UMLS:C0228701 {source="BIRNLEX:1120"} +is_a: UBERON:0004132 {source="MA"} ! trigeminal sensory nucleus +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009662 ! hindbrain nucleus +relationship: part_of UBERON:0003023 {source="NIF"} ! pontine tegmentum + +[Term] +id: UBERON:0002598 +name: paracentral sulcus +def: "The paracentral sulcus is a sulcus of the brain. It forms the paracentral lobule's anterior border." [http://en.wikipedia.org/wiki/Paracentral_sulcus] +synonym: "PCS" BROAD ABBREVIATION [BIRNLEX:1121, NIFSTD:NeuroNames_abbrevSource] +synonym: "sulcus paracentralis" RELATED LATIN [NeuroNames:70] +synonym: "sulcus subcentralis medialis" EXACT [BIRNLEX:1121] +xref: BIRNLEX:1121 +xref: DHBA:10633 +xref: FMA:83762 +xref: HBA:9365 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=70 {source="BIRNLEX:1121"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=70 +xref: http://linkedlifedata.com/resource/umls/id/C0228204 +xref: http://www.snomedbrowser.com/Codes/Details/369228002 +xref: Paracentral:sulcus +xref: UMLS:C0228204 {source="BIRNLEX:1121"} +is_a: UBERON:0013118 ! sulcus of brain + +[Term] +id: UBERON:0002599 +name: medial olfactory gyrus +synonym: "gyrus medius olfactorius" RELATED LATIN [NeuroNames:281] +synonym: "gyrus olfactorius medialis" RELATED LATIN [NeuroNames:281] +xref: BAMS:MOG +xref: BIRNLEX:1127 +xref: FMA:74509 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=281 {source="BIRNLEX:1127"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=281 +xref: http://linkedlifedata.com/resource/umls/id/C0152331 +xref: http://www.snomedbrowser.com/Codes/Details/369103002 +xref: UMLS:C0152331 {source="BIRNLEX:1127"} +is_a: UBERON:0000200 ! gyrus +disjoint_from: UBERON:0010010 {source="NIFSTD"} ! basal nucleus of telencephalon + +[Term] +id: UBERON:0002600 +name: limbic lobe +def: "Part of cerebral hemisphere located on the medial surface, forming a ring around the brain stem" [BIRNLEX:1128] +subset: pheno_slim +subset: uberon_slim +synonym: "fornicate convolution" RELATED [NeuroNames:834] +synonym: "fornicate gyrus" EXACT [FMA:72719] +synonym: "fornicate lobe" RELATED [NeuroNames:834] +synonym: "grande lobe limbique of Broca" EXACT [] +synonym: "gyrus fornicatus" RELATED LATIN [NeuroNames:834] +synonym: "limbic lobe (carpenter)" EXACT [] +synonym: "lobus limbicus" RELATED LATIN [http://en.wikipedia.org/wiki/Limbic_lobe] +xref: BAMS:Limbic_lobe +xref: BAMS:LL +xref: BIRNLEX:1128 +xref: CALOHA:TS-2061 +xref: DHBA:12155 +xref: FMA:72719 +xref: HBA:4219 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=834 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=834 {source="BIRNLEX:1128"} +xref: http://linkedlifedata.com/resource/umls/id/C0458337 +xref: http://www.snomedbrowser.com/Codes/Details/279215006 +xref: Limbic:lobe +xref: UMLS:C0458337 {source="BIRNLEX:1128"} +is_a: UBERON:0016526 {source="FMA"} ! lobe of cerebral hemisphere + +[Term] +id: UBERON:0002601 +name: fasciolar gyrus +def: "A small paired band that passes around the splenium of the corpus callosum from the lateral longitudinal stria to the dentate gyrus[Biology-Online]. A posterior and upward extension of the dentate gyrus, forming a transitional area between the dentate gyrus and the indusium griseum[BTO]." [BTO:0002497, http://www.biology-online.org/dictionary/Fasciolar_gyrus] +synonym: "fasciola cinerea" RELATED [BTO:0002497, http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=176] +synonym: "fasciola cinerea (Reil, Arnold)" RELATED [NeuroNames:176] +synonym: "fasciola cinereum" RELATED [NeuroNames:176] +synonym: "FC" RELATED ABBREVIATION [NeuroNames:176] +synonym: "gyrus fasciolaris" RELATED [NeuroNames:176] +synonym: "gyrus fasciolaris" RELATED [BTO:0002497] +synonym: "gyrus retrosplenialis hippocampi" RELATED LATIN [NeuroNames:176] +synonym: "retrosplenial gyrus of hippocampus" EXACT [FMA:61921] +synonym: "splenial gyrus" RELATED [FMA:61921] +xref: BAMS:FAG +xref: BAMS:FG +xref: BIRNLEX:1129 +xref: BTO:0002497 +xref: DHBA:12175 +xref: DMBA:112892265 +xref: EMAPA:35339 +xref: FMA:61921 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=176 {source="BIRNLEX:1129"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=176 +xref: http://linkedlifedata.com/resource/umls/id/C0152332 +xref: http://www.snomedbrowser.com/Codes/Details/279210001 +xref: MA:0003127 +xref: MBA:982 +xref: UMLS:C0152332 {source="BIRNLEX:1129"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002600 {source="NIFSTD"} ! limbic lobe + +[Term] +id: UBERON:0002602 +name: emboliform nucleus +alt_id: UBERON:0004071 +def: "the small wedge shaped nucleus interposed between the dentate and fastigial nuclei; it receives axons from Purkinje cells of the intermediate area of the cerebral hemispheres and most of its efferent connections travel via the superior cerebellar peduncle" [ISBN:0-683-40008-8, MP:0009981] +subset: pheno_slim +subset: uberon_slim +synonym: "anterior interposed nucleus" EXACT [FMA:72538] +synonym: "anterior interpositus nucleus" EXACT [FMA:72538] +synonym: "cerebellar emboliform nucleus" EXACT [] +synonym: "cerebellum emboliform nucleus" EXACT [MP:0009981] +synonym: "embolus" EXACT [] +synonym: "lateral interpositus (emboliform) nucleus" EXACT [DHBA:12401] +synonym: "lateral interpositus nucleus" RELATED [] +synonym: "nucleus emboliformis" RELATED LATIN [http://en.wikipedia.org/wiki/Emboliform_nucleus] +synonym: "nucleus emboliformis cerebelli" RELATED LATIN [NeuroNames:688] +synonym: "nucleus interpositus anterior" EXACT LATIN [FMA:72538, FMA:TA] +synonym: "nucleus interpositus anterior cerebelli" RELATED LATIN [NeuroNames:688] +xref: BAMS:AInt +xref: BAMS:Emb +xref: BIRNLEX:1135 +xref: BTO:0003837 +xref: DHBA:12401 +xref: DMBA:16930 +xref: EMAPA:37821 {source="MA:th"} +xref: Emboliform:nucleus +xref: FMA:72538 +xref: HBA:12947 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=688 {source="BIRNLEX:1135"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=688 +xref: http://linkedlifedata.com/resource/umls/id/C0175488 +xref: http://www.snomedbrowser.com/Codes/Details/279222003 +xref: UMLS:C0175488 {source="BIRNLEX:1135"} +is_a: UBERON:0004073 ! cerebellum interpositus nucleus +disjoint_from: UBERON:0002613 {source="lexical"} ! cerebellum globose nucleus + +[Term] +id: UBERON:0002603 +name: paraterminal gyrus +def: "The paraterminal gyrus (subcallosal gyrus, peduncle of the corpus callosum) is a narrow lamina on the medial surface of the hemisphere in front of the lamina terminalis, behind the parolfactory area, and below the rostrum of the corpus callosum. It is continuous around the genu of the corpus callosum with the supracallosal gyrus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Paraterminal_gyrus] +subset: uberon_slim +synonym: "gyrus paraterminalis" RELATED LATIN [http://en.wikipedia.org/wiki/Paraterminal_gyrus] +synonym: "gyrus subcallosus" RELATED LATIN [http://en.wikipedia.org/wiki/Paraterminal_gyrus] +synonym: "hippocampus praecommissuralis" RELATED LATIN [NeuroNames:171] +synonym: "hippocampus precommissuralis" RELATED LATIN [NeuroNames:171] +synonym: "paraterminal body (Noback)" RELATED [NeuroNames:171] +synonym: "peduncle of the corpus callosum" RELATED [NeuroNames:171] +synonym: "precommissural hippocampus" EXACT [FMA:61919] +synonym: "subcallosal gyrus" EXACT [FMA:61919] +xref: BAMS:PTG +xref: BAMS:SuCG +xref: BIRNLEX:1138 +xref: DHBA:12161 +xref: FMA:61919 +xref: HBA:4065 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=171 {source="BIRNLEX:1138"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=171 +xref: http://linkedlifedata.com/resource/umls/id/C0175231 +xref: Paraterminal:gyrus +xref: UMLS:C0175231 {source="BIRNLEX:1138"} +is_a: UBERON:0002665 ! supracallosal gyrus + +[Term] +id: UBERON:0002604 +name: ventral nucleus of lateral lemniscus +def: "The lateral lemniscus is a tract of axons in the brainstem that carries information about sound from the cochlear nucleus to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. Three distinct, primarily inhibitory, cellular groups are located interspersed within these fibers, and are thus named the nuclei of the lateral lemniscus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Ventral_nucleus_of_the_lateral_lemniscus] +subset: uberon_slim +synonym: "anterior nucleus of lateral lemniscus" EXACT [FMA:72484] +synonym: "nucleus anterior lemnisci lateralis" EXACT LATIN [FMA:72484, FMA:TA] +synonym: "nucleus lemnisci lateralis pars ventralis" RELATED LATIN [NeuroNames:592] +synonym: "nucleus lemnisci lateralis ventralis" RELATED LATIN [NeuroNames:592] +synonym: "nucleus of the lateral lemniscus ventral part" RELATED [BAMS:NLLv] +synonym: "nucleus of the lateral lemniscus, ventral part" EXACT [ABA:NLLv] +synonym: "ventral nucleus of the lateral lemniscus" EXACT [FMA:72484] +xref: BAMS:NLLv +xref: BAMS:VLL +xref: BIRNLEX:1140 +xref: BM:LLV +xref: DHBA:12457 +xref: FMA:72484 +xref: HBA:9200 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=592 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=592 {source="BIRNLEX:1140"} +xref: http://en.wikipedia.org/wiki/Ventral_nucleus_of_the_lateral_lemniscus +xref: http://linkedlifedata.com/resource/umls/id/C0175444 +xref: MBA:99 +xref: UMLS:C0175444 {source="BIRNLEX:1140"} +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0006840 ! nucleus of lateral lemniscus +is_a: UBERON:0009662 ! hindbrain nucleus +disjoint_from: UBERON:0003006 {source="lexical"} ! dorsal nucleus of lateral lemniscus +relationship: part_of UBERON:0003023 {source="FMA", source="NIF"} ! pontine tegmentum + +[Term] +id: UBERON:0002605 +name: precentral operculum +def: "The ventrolateral lip of the precentral gyrus, which overlies the insula and is bounded by the lateral fissure (Brain Info)." [BIRNLEX:1141] +synonym: "brodmann's area 6" RELATED [NeuroNames:2395] +synonym: "operculum precentrale" EXACT LATIN [FMA:74888, FMA:TA] +xref: BAMS:pro +xref: BIRNLEX:1141 +xref: FMA:74888 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2395 {source="BIRNLEX:1141"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2395 +xref: http://linkedlifedata.com/resource/umls/id/C0694581 +xref: UMLS:C0694581 {source="BIRNLEX:1141"} +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0010262 ! operculum of brain + +[Term] +id: UBERON:0002606 +name: neuropil +def: "A cluster of neurites that is part of a nervous system and forms a network of dendrites and axons where synapses are present and in which neuronal somata do not occur." [http://www.ncbi.nlm.nih.gov/pubmed/21062451] +subset: uberon_slim +synonym: "neuropilus" RELATED LATIN [http://en.wikipedia.org/wiki/Neuropil] +xref: BIRNLEX:1142 +xref: BTO:0005268 +xref: CALOHA:TS-2403 +xref: FBbt:00005139 +xref: FMA:261269 +xref: GAID:740 +xref: http://en.wikipedia.org/wiki/Neuropil +xref: http://linkedlifedata.com/resource/umls/id/C0228081 +xref: http://www.snomedbrowser.com/Codes/Details/67146008 +xref: MESH:D019581 +xref: NCIT:C12617 +xref: NIF_Subcellular:sao205380252 +xref: UMLS:C0228081 {source="ncithesaurus:Neuropil"} +is_a: UBERON:0011215 ! central nervous system cell part cluster + +[Term] +id: UBERON:0002607 +name: superior rostral sulcus +synonym: "SROS" BROAD ABBREVIATION [BIRNLEX:1143, NIFSTD:NeuroNames_abbrevSource] +synonym: "sulcus rostralis superior" EXACT [BIRNLEX:1143] +xref: BAMS:sros +xref: BIRNLEX:1143 +xref: DHBA:146034840 +xref: FMA:83766 +xref: HBA:9366 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=74 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=74 {source="BIRNLEX:1143"} +xref: http://linkedlifedata.com/resource/umls/id/C0694583 +xref: UMLS:C0694583 {source="BIRNLEX:1143"} +is_a: UBERON:0013118 ! sulcus of brain + +[Term] +id: UBERON:0002608 +name: caudal part of ventral lateral nucleus +synonym: "caudal part of the ventral lateral nucleus" RELATED [NeuroNames:339] +synonym: "dorsal part of ventral lateral posterior nucleus (jones)" EXACT [] +synonym: "nucleus dorsooralis (van buren)" EXACT [BIRNLEX:1144] +synonym: "nucleus lateralis intermedius mediodorsalis situs dorsalis" EXACT [BIRNLEX:1144] +synonym: "nucleus ventralis lateralis, pars caudalis" EXACT [BIRNLEX:1144] +synonym: "ventral lateral nucleus, caudal part" EXACT [FMA:62194] +synonym: "ventral lateral thalamic nucleus, caudal part" EXACT [FMA:62194] +synonym: "VLC" BROAD ABBREVIATION [BIRNLEX:1144, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:VLC +xref: BIRNLEX:1144 +xref: DHBA:10422 +xref: FMA:62194 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=339 {source="BIRNLEX:1144"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=339 +xref: http://linkedlifedata.com/resource/umls/id/C0175281 +xref: UMLS:C0175281 {source="BIRNLEX:1144"} +is_a: UBERON:0019269 ! gray matter of diencephalon +relationship: part_of UBERON:0001925 ! ventral lateral nucleus of thalamus + +[Term] +id: UBERON:0002609 +name: spinothalamic tract of midbrain +synonym: "spinothalamic tract of the midbrain" RELATED [NeuroNames:535] +synonym: "STMB" BROAD ABBREVIATION [BIRNLEX:1150, NIFSTD:NeuroNames_abbrevSource] +synonym: "tractus spinothalamicus (mesencephali)" RELATED LATIN [NeuroNames:535] +xref: BAMS:stmb +xref: BIRNLEX:1150 +xref: FMA:72463 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=535 {source="BIRNLEX:1150"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=535 +xref: http://linkedlifedata.com/resource/umls/id/C0152376 +xref: http://www.snomedbrowser.com/Codes/Details/369090006 +xref: UMLS:C0152376 {source="BIRNLEX:1150"} +is_a: UBERON:0007702 {source="FMA"} ! tract of brain +relationship: part_of UBERON:0001943 ! midbrain tegmentum +relationship: part_of UBERON:0007703 ! spinothalamic tract + +[Term] +id: UBERON:0002610 +name: cochlear nuclear complex +def: "The cochlear nuclei consist of: (a) the dorsal cochlear nucleus, corresponding to the tuberculum acusticum on the dorso-lateral surface of the inferior peduncle; and (b) the ventral or accessory cochlear nucleus, placed between the two divisions of the nerve, on the ventral aspect of the inferior peduncle. [WP,unvetted]." [http://en.wikipedia.org/wiki/Cochlear_nuclei] +subset: uberon_slim +synonym: "cochlear nuclei" EXACT [FMA:72240] +synonym: "nuclei cochleares" RELATED LATIN [http://en.wikipedia.org/wiki/Cochlear_nuclei] +xref: BAMS:CN +xref: BIRNLEX:1151 +xref: BM:Me-Co +xref: Cochlear:nuclei +xref: DHBA:12437 +xref: EV:0100260 +xref: FMA:72240 +xref: HBA:9528 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=720 {source="BIRNLEX:1151"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=720 +xref: http://linkedlifedata.com/resource/umls/id/C0152411 +xref: MBA:607 +xref: UMLS:C0152411 {source="BIRNLEX:1151"} +xref: UMLS:C0152411 {source="ncithesaurus:Cochlear_Nuclei"} +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: part_of UBERON:0001896 {inconsistent_with="MA", source="FMA"} ! medulla oblongata + +[Term] +id: UBERON:0002611 +name: obsolete node of ranvier +def: "." [http://en.wikipedia.org/wiki/Node_of_ranvier] +subset: uberon_slim +synonym: "ranvier node" EXACT [FMA:67368] +synonym: "ranvier's node" EXACT [FMA:67368] +xref: http://en.wikipedia.org/wiki/Node_of_ranvier +is_obsolete: true +consider: BIRNLEX:1152 +consider: FMA:67368 +consider: GAID:748 +consider: GO:0033268 +consider: NCIT:C33172 + +[Term] +id: UBERON:0002612 +name: transverse orbital sulcus +synonym: "sulcus orbitalis transversus" EXACT [BIRNLEX:1155] +synonym: "TOS" BROAD ABBREVIATION [BIRNLEX:1155, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:tos +xref: BIRNLEX:1155 +xref: DHBA:13223 +xref: FMA:83771 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=80 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=80 {source="BIRNLEX:1155"} +xref: http://linkedlifedata.com/resource/umls/id/C0262349 +xref: UMLS:C0262349 {source="BIRNLEX:1155"} +is_a: UBERON:0002595 ! orbital sulcus + +[Term] +id: UBERON:0002613 +name: cerebellum globose nucleus +alt_id: UBERON:0004072 +def: "The two or three small masses of gray matter that is located medial to the emboliform nucleus and lateral to the fastigial nucleus; it receives axons from the intermediate area of the cerebellar hemispheres and its afferents exit through the superior cerebellar peduncle." [MP:0009982] +subset: pheno_slim +subset: uberon_slim +synonym: "globose nucleus" EXACT [FMA:72536] +synonym: "medial interposed nucleus" EXACT [] +synonym: "medial interpositus (globose) nucleus" EXACT [DHBA:12400] +synonym: "medial interpositus nucleus" EXACT [] +synonym: "nuclei globosi" RELATED LATIN [NeuroNames:689] +synonym: "nucleus globosus" RELATED LATIN [http://en.wikipedia.org/wiki/Globose_nucleus] +synonym: "nucleus globosus cerebelli" RELATED LATIN [NeuroNames:689] +synonym: "nucleus interpositus posterior" EXACT LATIN [FMA:72536, FMA:TA] +synonym: "nucleus interpositus posterior cerebelli" RELATED LATIN [NeuroNames:689] +synonym: "posterior interposed nucleus" EXACT [FMA:72536] +synonym: "posterior interpositus nucleus" EXACT [FMA:72536] +xref: BAMS:Glo +xref: BIRNLEX:1158 +xref: BTO:0003838 +xref: DHBA:12400 +xref: DMBA:16932 +xref: EMAPA:37820 {source="MA:th"} +xref: FMA:72536 +xref: Globose:nucleus +xref: HBA:12949 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=689 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=689 {source="BIRNLEX:1158"} +xref: http://linkedlifedata.com/resource/umls/id/C0175489 +xref: http://www.snomedbrowser.com/Codes/Details/279223008 +xref: UMLS:C0175489 {source="BIRNLEX:1158"} +is_a: UBERON:0004073 ! cerebellum interpositus nucleus + +[Term] +id: UBERON:0002614 +name: medial part of ventral lateral nucleus +synonym: "medial part of the ventral lateral nucleus" RELATED [NeuroNames:340] +synonym: "nucleus ventralis lateralis thalami, pars medialis" EXACT [BIRNLEX:1159] +synonym: "nucleus ventralis lateralis, pars medialis" RELATED LATIN [NeuroNames:340] +synonym: "nucleus ventrooralis medialis (Hassler)" EXACT [BIRNLEX:1159] +synonym: "ventral lateral nucleus, medial part" EXACT [FMA:62195] +synonym: "ventral medial nucleus" EXACT [FMA:62195] +synonym: "ventral medial nucleus of thalamus" EXACT [BIRNLEX:1159] +synonym: "ventral medial nucleus of the thalamus" RELATED [BAMS:VM] +synonym: "ventromedial nucleus of thalamus" RELATED [BAMS:VM] +synonym: "ventromedial nucleus of the thalamus" RELATED [BAMS:VM] +synonym: "ventromedial thalamic nucleus" RELATED [BAMS:VM] +synonym: "VLM" BROAD ABBREVIATION [BIRNLEX:1159, NIFSTD:NeuroNames_abbrevSource] +synonym: "vMp (Macchi)" EXACT LATIN [FMA:62195, FMA:TA] +xref: BAMS:VLM +xref: BAMS:VM +xref: BIRNLEX:1159 +xref: BM:Die-Th-VM +xref: DHBA:10427 +xref: FMA:62195 +xref: HBA:4421 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=340 {source="BIRNLEX:1159"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=340 +xref: http://linkedlifedata.com/resource/umls/id/C0175282 +xref: MBA:685 +xref: UMLS:C0175282 {source="BIRNLEX:1159"} +is_a: UBERON:0019269 ! gray matter of diencephalon +relationship: part_of UBERON:0001925 ! ventral lateral nucleus of thalamus + +[Term] +id: UBERON:0002615 +name: ventral tegmental decussation +synonym: "anterior tegmental decussation" EXACT [FMA:72452] +synonym: "decussatio inferior (Forel)" RELATED LATIN [NeuroNames:524] +synonym: "decussatio tegmentalis anterior" EXACT LATIN [FMA:72452, FMA:TA] +synonym: "decussatio tegmenti ventralis" RELATED LATIN [NeuroNames:524] +synonym: "decussatio ventralis tegmenti" RELATED LATIN [NeuroNames:524] +synonym: "decussation of forel" EXACT [] +synonym: "inferior decussation (Forel's decussation)" RELATED [NeuroNames:524] +synonym: "ventral tegmental decussation (Forel)" RELATED [NeuroNames:524] +synonym: "ventral tegmental decussation of forel" EXACT [] +synonym: "VTGX" BROAD ABBREVIATION [BIRNLEX:1163, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:vtd +xref: BAMS:vtgx +xref: BIRNLEX:1163 +xref: DHBA:12366 +xref: DMBA:17807 +xref: FMA:72452 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=524 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=524 {source="BIRNLEX:1163"} +xref: http://linkedlifedata.com/resource/umls/id/C0152371 +xref: http://www.snomedbrowser.com/Codes/Details/369249001 +xref: MBA:397 +xref: UMLS:C0152371 {source="BIRNLEX:1163"} +is_a: UBERON:0007418 ! neural decussation +intersection_of: UBERON:0007418 ! neural decussation +intersection_of: part_of UBERON:0002691 ! ventral tegmental area +disjoint_from: UBERON:0003009 {source="lexical"} ! dorsal tegmental decussation +relationship: part_of UBERON:0002691 ! ventral tegmental area + +[Term] +id: UBERON:0002616 +name: regional part of brain +def: "Anatomical divisons of the brain according to one or more criteria, e.g. cytoarchitectural, gross anatomy. Parts may be contiguous in 3D or not, e.g., basal ganglia." [BIRNLEX:1167] +subset: non_informative +synonym: "anatomical structure of brain" EXACT [OBOL:automatic] +synonym: "biological structure of brain" EXACT [OBOL:automatic] +synonym: "brain anatomical structure" EXACT [OBOL:automatic] +synonym: "brain biological structure" EXACT [OBOL:automatic] +synonym: "brain part" EXACT [] +synonym: "neuraxis segment" EXACT [FMA:55676] +synonym: "neuroanatomical region" EXACT [] +synonym: "segment of brain" EXACT [BIRNLEX:1167] +xref: BIRNLEX:1167 +xref: FMA:55676 +xref: http://linkedlifedata.com/resource/umls/id/C0445620 +xref: http://www.snomedbrowser.com/Codes/Details/384763002 +xref: NCIT:C13031 +xref: UMLS:C0445620 {source="ncithesaurus:Brain_Part"} +is_a: UBERON:0000073 ! regional part of nervous system +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000481 ! multi-tissue structure +intersection_of: part_of UBERON:0000955 ! brain +relationship: composed_primarily_of UBERON:0003714 ! neural tissue +relationship: part_of UBERON:0000955 ! brain + +[Term] +id: UBERON:0002617 +name: pars postrema of ventral lateral nucleus +synonym: "nucleus dorsointermedius externus magnocellularis (hassler)" EXACT [BIRNLEX:1170] +synonym: "nucleus lateralis intermedius mediodorsalis situs postremus" EXACT [BIRNLEX:1170] +synonym: "nucleus ventralis lateralis thalami, pars postrema" EXACT [BIRNLEX:1170] +synonym: "nucleus ventralis lateralis, pars postrema" RELATED LATIN [NeuroNames:341] +synonym: "pars postrema of the ventral lateral nucleus" RELATED [NeuroNames:341] +synonym: "posterodorsal part of ventral lateral posterior nucleus (jones)" EXACT [] +synonym: "ventral lateral nucleus (pars postrema)" EXACT [FMA:62196] +synonym: "ventrolateral posterior thalamic nucleus" RELATED [BAMS:VLP] +synonym: "ventrolateral preoptic nucleus" RELATED [BAMS:VLP] +synonym: "VLP" BROAD ABBREVIATION [BIRNLEX:1170, NIFSTD:NeuroNames_abbrevSource] +synonym: "vLps" EXACT LATIN [FMA:62196, FMA:TA] +xref: BAMS:VLP +xref: BIRNLEX:1170 +xref: DMBA:15612 +xref: FMA:62196 +xref: HBA:4423 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=341 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=341 {source="BIRNLEX:1170"} +xref: http://linkedlifedata.com/resource/umls/id/C0262304 +xref: MBA:689 +xref: UMLS:C0262304 {source="BIRNLEX:1170"} +is_a: UBERON:0019269 ! gray matter of diencephalon +relationship: part_of UBERON:0001925 ! ventral lateral nucleus of thalamus + +[Term] +id: UBERON:0002618 +name: root of trochlear nerve +alt_id: UBERON:0002674 +synonym: "4nf" BROAD ABBREVIATION [BIRNLEX:1172, NIFSTD:NeuroNames_abbrevSource] +synonym: "central part of trochlear nerve" EXACT [FMA:71116] +synonym: "fibrae nervi trochlearis" RELATED LATIN [NeuroNames:486] +synonym: "trochlear nerve fibers" EXACT [FMA:71116] +synonym: "trochlear nerve or its root" RELATED [BAMS:4n] +synonym: "trochlear nerve root" EXACT [FMA:71116] +synonym: "trochlear nerve tract" EXACT [FMA:71116] +synonym: "trochlear nerve/root" RELATED [BAMS:4n] +xref: BAMS:4n +xref: BAMS:4nf +xref: BIRNLEX:1172 +xref: BIRNLEX:1341 +xref: DHBA:12377 +xref: DMBA:17737 +xref: FMA:71116 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=486 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=486 {source="BIRNLEX:1172"} +xref: http://linkedlifedata.com/resource/umls/id/C0175374 +xref: UMLS:C0175374 {source="BIRNLEX:1172"} +is_a: UBERON:0006843 ! root of cranial nerve +intersection_of: UBERON:0006843 ! root of cranial nerve +intersection_of: extends_fibers_into UBERON:0001644 ! trochlear nerve +relationship: extends_fibers_into UBERON:0001644 ! trochlear nerve +relationship: part_of UBERON:0002298 ! brainstem + +[Term] +id: UBERON:0002619 +name: obsolete regional part of cerebral cortex +alt_id: UBERON:0003208 +def: "A regional part of brain that is part of a cerebral cortex [Automatically generated definition]." [OBOL:automatic] +subset: non_informative +synonym: "cerebral cortex part" EXACT [] +synonym: "cerebral cortex region" RELATED [MA:0000187] +synonym: "neocortex region" EXACT [MA:0000187] +synonym: "region of cerebral cortex" EXACT [FMA:242193] +synonym: "segment of cerebral cortex" NARROW [BIRNLEX:1173] +is_obsolete: true +consider: BIRNLEX:1173 +consider: EMAPA:35589 +consider: FMA:242193 +consider: MA:0000187 +consider: SCTID:119408004 + +[Term] +id: UBERON:0002620 +name: tuber cinereum +def: "Part of hypothalamus consisting of hollow eminence of gray matter situated between the mammilary bodies and the optic chiasm visible on the basal surface of the brain (adapted from Wikipedia)" [BIRNLEX:1189, http://en.wikipedia.org/wiki/Tuber_cinereum] +subset: uberon_slim +synonym: "TBCN" BROAD ABBREVIATION [BIRNLEX:1189, NIFSTD:NeuroNames_abbrevSource] +synonym: "tuber cinereum area" RELATED [NeuroNames:1782] +synonym: "tuberal area" RELATED [NeuroNames:1782] +synonym: "tuberal area of hypothalamus" RELATED [NeuroNames:1782] +synonym: "tuberal area, hypothalamus" RELATED [NeuroNames:1782] +synonym: "tuberal nucleus" RELATED [MA:0000844] +synonym: "tuberal region" RELATED [MA:0000844] +synonym: "tubercle of Rolando" RELATED [http://en.wikipedia.org/wiki/Tuber_cinereum] +xref: BAMS:tbcn +xref: BAMS:TuCn +xref: BIRNLEX:1189 +xref: DHBA:10647 +xref: DMBA:15665 +xref: EMAPA:35420 +xref: FMA:62327 +xref: GAID:649 +xref: HBA:4633 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1782 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=393 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=393 {source="BIRNLEX:1189"} +xref: http://linkedlifedata.com/resource/umls/id/C0041283 +xref: http://linkedlifedata.com/resource/umls/id/C1284640 +xref: http://www.snomedbrowser.com/Codes/Details/362381006 +xref: MA:0000844 +xref: MESH:A08.186.211.730.385.357.352.870 +xref: NCIT:C33817 +xref: Tuber:cinereum +xref: UMLS:C0041283 {source="ncithesaurus:Tuber_Cinereum"} +xref: UMLS:C0041283 {source="BIRNLEX:1189"} +xref: UMLS:C1284640 {source="BIRNLEX:1189"} +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0002272 {source="MA"} ! medial zone of hypothalamus +relationship: part_of UBERON:0002555 {source="FMA"} ! intermediate hypothalamic region + +[Term] +id: UBERON:0002621 +name: obsolete regional part of cochlear nuclear complex +def: "A regional part of brain that is part of a cochlear nuclear complex [Automatically generated definition]." [OBOL:automatic] +subset: non_informative +synonym: "cochlear nuclear complex segment" EXACT [FMA:83952] +synonym: "segment of cochlear nuclear complex" EXACT [BIRNLEX:1195] +is_obsolete: true +consider: BIRNLEX:1195 +consider: FMA:83952 + +[Term] +id: UBERON:0002622 +name: preoptic periventricular nucleus +def: "The preoptic periventricular nucleus is located along the midline and is medial to the medial preoptic nucleus.[WP,unvetted]." [http://en.wikipedia.org/wiki/Preoptic_area#Preoptic_periventricular_nucleus] +synonym: "dorsal periventricular hypothalamic nucleus" RELATED [NeuroNames:379] +synonym: "nucleus periventricularis hypothalami, pars dorsalis" RELATED LATIN [NeuroNames:379] +synonym: "nucleus periventricularis praeopticus" RELATED LATIN [NeuroNames:379] +synonym: "nucleus periventricularis preopticus" RELATED LATIN [NeuroNames:379] +synonym: "nucleus preopticus periventricularis" EXACT LATIN [FMA:62324, FMA:TA] +synonym: "periventricular hypothalamic nucleus, preoptic part" RELATED [BAMS:PVpo] +synonym: "periventricular nucleus, anterior portion" RELATED [NeuroNames:379] +synonym: "periventricular preoptic nucleus" EXACT [FMA:62324] +synonym: "POP" BROAD ABBREVIATION [BIRNLEX:1201, NIFSTD:NeuroNames_abbrevSource] +synonym: "preoptic periventricular hypothalamic nucleus" EXACT [FMA:62324] +xref: BAMS:POP +xref: BAMS:PVpo +xref: BIRNLEX:1201 +xref: FMA:62324 +xref: HBA:4549 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=379 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=379 {source="BIRNLEX:1201"} +xref: http://linkedlifedata.com/resource/umls/id/C0175314 +xref: http://linkedlifedata.com/resource/umls/id/C1289554 +xref: http://www.snomedbrowser.com/Codes/Details/369127000 +xref: MBA:133 +xref: Preoptic_periventricular_nucleus +xref: UMLS:C0175314 {source="BIRNLEX:1201"} +xref: UMLS:C1289554 {source="BIRNLEX:1201"} +is_a: UBERON:0007251 ! preoptic nucleus + +[Term] +id: UBERON:0002623 +name: cerebral peduncle +def: "Synonym for macrodissected adult human tegmentum (Vicq d'Azyr, 1784; Swanson, 2000); pp. 555-556. Later used thus by for example His (1893b, p. 178), Herrick (1915, p. 160), Strong & Elwyn (1943, p. 17), Carpenter (1976, p. 367), Williams & Warwick (1980, p. 935)." [BIRNLEX:1202] +comment: Neuronames includes the substantia nigra, crus cerebri and midbrain tegmentum as substructures of the cerebral peduncle; the mouse atlases only include the crus cerebri as the cerebral peduncle (MM) +subset: efo_slim +subset: uberon_slim +synonym: "cerebal peduncle" RELATED [NeuroNames:487] +synonym: "cerebral peduncle" EXACT [FMA:62394] +synonym: "cerebral peduncle (archaic)" RELATED [NeuroNames:487] +synonym: "CP" BROAD ABBREVIATION [BIRNLEX:1202, NIFSTD:NeuroNames_abbrevSource] +synonym: "peduncle of midbrain" EXACT [FMA:62394] +synonym: "pedunculi cerebri" RELATED LATIN [NeuroNames:487] +synonym: "pedunculus cerebralis" RELATED LATIN [NeuroNames:487] +synonym: "pedunculus cerebri" EXACT LATIN [FMA:62394, FMA:TA] +synonym: "pedunculus cerebri" RELATED LATIN [http://en.wikipedia.org/wiki/Cerebral_peduncle] +synonym: "tegmentum" RELATED [] +xref: BAMS:cpd +xref: BIRNLEX:1202 +xref: BM:CP +xref: BTO:0004676 +xref: Cerebral:peduncle +xref: EFO:0001987 +xref: FMA:62394 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=487 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=487 {source="BIRNLEX:1202"} +xref: http://linkedlifedata.com/resource/umls/id/C0007793 +xref: http://www.snomedbrowser.com/Codes/Details/362391000 +xref: MBA:924 +xref: NCIT:C32291 +xref: UMLS:C0007793 {source="ncithesaurus:Cerebral_Peduncle"} +xref: UMLS:C0007793 {source="BIRNLEX:1202"} +is_a: UBERON:0007417 {source="FMA"} ! peduncle of neuraxis +is_a: UBERON:0016554 ! white matter of midbrain +relationship: has_part UBERON:0001943 ! midbrain tegmentum +relationship: has_part UBERON:0002038 ! substantia nigra + +[Term] +id: UBERON:0002624 +name: orbital part of inferior frontal gyrus +def: "Component of the inferior frontal gyrus.defined as the first gyrus from the precentral gyrus.the remainder of the inferior frontal gyrus once the pars opercularis and triangularis have been defined (Christine Fennema-Notestine)., NeuroNames" [BIRNLEX:1207] +synonym: "brodmann's area 36" RELATED [NeuroNames:2410] +synonym: "gyrus frontalis inferior, pars orbitalis" EXACT LATIN [FMA:61982, FMA:TA] +synonym: "inferior frontal gyrus, orbital part" EXACT [FMA:61982] +synonym: "pars orbitalis gyri frontalis inferioris" EXACT [BIRNLEX:1207] +synonym: "pars orbitalis, inferior frontal gyrus" BROAD [http://orcid.org/0000-0001-6755-0259] +xref: BAMS:IFGOr +xref: BAMS:OrIFG +xref: BIRNLEX:1207 +xref: DHBA:12120 +xref: FMA:61982 +xref: HBA:4044 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2410 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2410 {source="BIRNLEX:1207"} +xref: http://en.wikipedia.org/wiki/Orbital_part_of_inferior_frontal_gyrus +xref: http://linkedlifedata.com/resource/umls/id/C0262300 +xref: NCIT:C33221 +xref: UMLS:C0262300 {source="BIRNLEX:1207"} +xref: UMLS:C0262300 {source="ncithesaurus:Orbital_Part_of_the_Inferior_Frontal_Gyrus"} +is_a: UBERON:0015593 ! frontal gyrus +relationship: part_of UBERON:0002998 {source="FMA"} ! inferior frontal gyrus + +[Term] +id: UBERON:0002625 +name: median preoptic nucleus +def: "The median preoptic nucleus is located along the midline in a position significantly dorsal to the other 3 preoptic nuclei, at least in the macaca fascicularis brain. It wraps around the top (dorsal), front, and bottom (ventral) surfaces of the anterior commissure. The median preoptic nucleus generates thirst. Drinking decreases noradrenaline release in the median preoptic nucleus." [http://en.wikipedia.org/wiki/Preoptic_area#Median_preoptic_nucleus] +subset: uberon_slim +synonym: "median preoptic nucleus (Loo)" RELATED [NeuroNames:378] +synonym: "MnPO" BROAD ABBREVIATION [BIRNLEX:1208, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus praeopticus medianus" RELATED LATIN [NeuroNames:378] +synonym: "nucleus preopticus medianus" RELATED LATIN [NeuroNames:378] +synonym: "periventricular nucleus, preventricular portion" RELATED [NeuroNames:378] +xref: BAMS:MEPO +xref: BAMS:MnPO +xref: BIRNLEX:1208 +xref: BM:MPO +xref: DHBA:13063 +xref: FMA:62323 +xref: HBA:4548 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=378 {source="BIRNLEX:1208"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=378 +xref: http://linkedlifedata.com/resource/umls/id/C0259793 +xref: MBA:452 +xref: Median_preoptic_nucleus +xref: UMLS:C0259793 {source="BIRNLEX:1208"} +is_a: UBERON:0007251 ! preoptic nucleus + +[Term] +id: UBERON:0002626 +name: head of caudate nucleus +def: "Largest part of the caudate nucleus lying lateral to and protruding into the anterior of the lateral ventricle" [BIRNLEX:1212] +synonym: "caput (caudatus)" EXACT [FMA:61852] +synonym: "caput nuclei caudati" RELATED LATIN [NeuroNames:227] +synonym: "caudate nuclear head" EXACT [FMA:61852] +synonym: "head of the caudate nucleus" RELATED [NeuroNames:227] +xref: BAMS:HCd +xref: BIRNLEX:1212 +xref: DHBA:10335 +xref: EMAPA:18547 +xref: FMA:61852 +xref: HBA:12900 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=227 {source="BIRNLEX:1212"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=227 +xref: http://linkedlifedata.com/resource/umls/id/C0152336 +xref: http://www.snomedbrowser.com/Codes/Details/279298007 +xref: UMLS:C0152336 {source="BIRNLEX:1212"} +is_a: UBERON:0011300 ! gray matter of telencephalon +relationship: part_of UBERON:0001873 ! caudate nucleus + +[Term] +id: UBERON:0002627 +name: capsule of medial geniculate body +synonym: "capsula corporis geniculati medialis" EXACT [BIRNLEX:1214] +synonym: "capsule of the medial geniculate body" RELATED [NeuroNames:359] +synonym: "medial geniculate body capsule" EXACT [FMA:62049] +xref: BAMS:cmg +xref: BIRNLEX:1214 +xref: FMA:62049 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=359 {source="BIRNLEX:1214"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=359 +is_a: UBERON:0003931 ! diencephalic white matter +relationship: part_of UBERON:0001927 ! medial geniculate body + +[Term] +id: UBERON:0002628 +name: tail of caudate nucleus +def: "Narrowest part of the caudate nucleus, roughtly defined as that portion that curves ventrally from the body of the caudate nucleus, following the temporal horn of the lateral ventricle" [BIRNLEX:1215] +synonym: "cauda (caudatus)" RELATED LATIN [NeuroNames:229] +synonym: "cauda nuclei caudati" RELATED LATIN [NeuroNames:229] +synonym: "caudate nuclear tail" EXACT [FMA:61854] +synonym: "tail of the caudate nucleus" RELATED [NeuroNames:229] +xref: BAMS:TCd +xref: BIRNLEX:1215 +xref: DHBA:10337 +xref: EMAPA:18548 +xref: FMA:61854 +xref: HBA:12901 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=229 {source="BIRNLEX:1215"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=229 +xref: http://www.snomedbrowser.com/Codes/Details/279299004 +is_a: UBERON:0011300 ! gray matter of telencephalon +relationship: part_of UBERON:0001873 ! caudate nucleus + +[Term] +id: UBERON:0002629 +name: triangular part of inferior frontal gyrus +def: "Component of the inferior frontal gyrus.defined as the second gyrus from the precentral gyrus (Christine Fennema-Notestine)." [BIRNLEX:1216] +synonym: "gyrus frontalis inferior, pars triangularis" EXACT LATIN [FMA:61980, FMA:TA] +synonym: "inferior frontal gyrus, pars triangularis" RELATED [http://orcid.org/0000-0001-6755-0259] +synonym: "inferior frontal gyrus, triangular part" RELATED [BAMS:IFGTr] +synonym: "pars triangularis" EXACT LATIN [FMA:61980, FMA:TA] +synonym: "pars triangularis gyri frontalis inferioris" EXACT [BIRNLEX:1216] +synonym: "pars triangularis of frontal operculum (Ono)" EXACT LATIN [FMA:61980, FMA:TA] +xref: BAMS:IFGTr +xref: BAMS:TrIFG +xref: BIRNLEX:1216 +xref: DHBA:12118 +xref: FMA:61980 +xref: HBA:4038 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=86 {source="BIRNLEX:1216"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=86 +xref: http://en.wikipedia.org/wiki/Triangular_part_of_inferior_frontal_gyrus +xref: http://linkedlifedata.com/resource/umls/id/C0262350 +xref: NCIT:C33811 +xref: UMLS:C0262350 {source="ncithesaurus:Triangular_Part_of_the_Inferior_Frontal_Gyrus"} +xref: UMLS:C0262350 {source="BIRNLEX:1216"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002998 {source="FMA"} ! inferior frontal gyrus + +[Term] +id: UBERON:0002630 +name: body of caudate nucleus +def: "Part of caudate nucleus lying just dorsal to the thalamus" [BIRNLEX:1217] +synonym: "body of the caudate nucleus" RELATED [NeuroNames:228] +synonym: "caudate body" RELATED [FMA:61853] +synonym: "caudate nuclear body" EXACT [FMA:61853] +synonym: "corpus (caudatus)" EXACT [FMA:61853] +synonym: "corpus nuclei caudati" RELATED LATIN [NeuroNames:228] +xref: BAMS:BCd +xref: BIRNLEX:1217 +xref: DHBA:10336 +xref: FMA:61853 +xref: HBA:12899 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=228 {source="BIRNLEX:1217"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=228 +xref: http://linkedlifedata.com/resource/umls/id/C0152338 +xref: http://www.snomedbrowser.com/Codes/Details/314175006 +xref: UMLS:C0152338 {source="BIRNLEX:1217"} +is_a: UBERON:0011300 ! gray matter of telencephalon +relationship: part_of UBERON:0001873 ! caudate nucleus + +[Term] +id: UBERON:0002631 +name: cerebral crus +def: "The cerebral crus is the anterior portion of the cerebral peduncle which contains the motor tracts, the plural of which is cerebral crura. In some older texts, it is used as a synonym for the entire cerebral peduncle, not just the anterior portion of it. [WP,unvetted]." [http://en.wikipedia.org/wiki/Cerebral_crus] +subset: uberon_slim +synonym: "base of cerebral peduncle" RELATED [BTO:0004677] +synonym: "basis cerebri (Oertel)" RELATED LATIN [NeuroNames:539] +synonym: "basis pedunculi (Oertel)" RELATED LATIN [NeuroNames:539] +synonym: "basis pedunculi cerebri (Willis)" RELATED LATIN [NeuroNames:539] +synonym: "CCR" BROAD ABBREVIATION [BIRNLEX:1218, NIFSTD:NeuroNames_abbrevSource] +synonym: "cerebral peduncle (clinical definition)" EXACT [FMA:72464] +synonym: "cerebral peduncle, basal part" RELATED [NeuroNames:539] +synonym: "crura cerebri" EXACT [MA:0001056] +synonym: "crus cerebri" EXACT [EV:0100243] +synonym: "crus cerebri" RELATED LATIN [http://en.wikipedia.org/wiki/Cerebral_crus] +synonym: "crus cerebri" RELATED [BTO:0004677] +synonym: "crus of the cerebral peduncle" RELATED [NeuroNames:539] +synonym: "pars neo-encephalica pedunculi" RELATED LATIN [NeuroNames:539] +synonym: "pedunculus cerebri, pars basalis" RELATED LATIN [NeuroNames:539] +synonym: "pes pedunculi" RELATED LATIN [NeuroNames:539] +synonym: "pes pedunculi of midbrain" RELATED LATIN [NeuroNames:539] +xref: BAMS:cp +xref: BIRNLEX:1218 +xref: BTO:0004677 +xref: Cerebral:crus +xref: EMAPA:37499 {source="MA:th"} +xref: EV:0100243 +xref: FMA:72464 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=539 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=539 {source="BIRNLEX:1218"} +xref: http://linkedlifedata.com/resource/umls/id/C0175414 +xref: MA:0001056 +xref: NCIT:C32409 +xref: UMLS:C0175414 {source="BIRNLEX:1218"} +is_a: UBERON:0016554 ! white matter of midbrain +relationship: in_lateral_side_of UBERON:0001891 {source="FMA-abduced-lr"} ! midbrain +relationship: part_of UBERON:0002623 {source="BTO"} ! cerebral peduncle + +[Term] +id: UBERON:0002632 +name: medial part of medial mammillary nucleus +synonym: "medial mamillary nucleus" RELATED [BAMS:MM] +synonym: "medial mammillary nucleus (carpenter)" EXACT [] +synonym: "medial mammillary nucleus median part" RELATED [BAMS:MMme] +synonym: "medial mammillary nucleus, medial part" EXACT [FMA:62345] +synonym: "medial mammillary nucleus, median part" EXACT [FMA:62345] +synonym: "medial part of the medial mammillary nucleus" RELATED [NeuroNames:415] +synonym: "medial subdivision of medial mammillary nucleus" EXACT [FMA:62345] +synonym: "MML" BROAD ABBREVIATION [BIRNLEX:1220, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus corporis mamillaris medialis, pars medialis" RELATED LATIN [NeuroNames:415] +synonym: "nucleus medialis corpus mamillaris (Shantha)" RELATED LATIN [NeuroNames:415] +xref: BAMS:MMM +xref: BAMS:MMme +xref: BAMS:Mmme +xref: BAMS:MMn +xref: BIRNLEX:1220 +xref: DHBA:10501 +xref: DMBA:15730 +xref: FMA:62345 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=415 {source="BIRNLEX:1220"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=415 +xref: http://linkedlifedata.com/resource/umls/id/C0694605 +xref: MBA:732 +xref: UMLS:C0694605 {source="BIRNLEX:1220"} +is_a: UBERON:0019269 ! gray matter of diencephalon +disjoint_from: UBERON:0002664 {source="lexical"} ! lateral part of medial mammillary nucleus +relationship: part_of UBERON:0001939 {source="NIFSTD"} ! medial mammillary nucleus + +[Term] +id: UBERON:0002633 +name: motor nucleus of trigeminal nerve +def: "Nucleus located in the pontine tegmentum containing cells that give rise to motor innervation of the jaw through the trigeminal nerve. It receives both crossed and uncrossed fibers from the cerebral cortex (Heimer, L. The Human Brain and Spinal Cord, 2nd ed., 1996, pg 248)." [BIRNLEX:1222] +subset: pheno_slim +subset: vertebrate_core +synonym: "motor nucleus" RELATED [NeuroNames:559] +synonym: "motor nucleus of cranial nerve v" EXACT [] +synonym: "motor nucleus of the trigeminal" RELATED [NeuroNames:559] +synonym: "motor nucleus of the trigeminal nerve" RELATED [NeuroNames:559] +synonym: "motor nucleus of trigeminal" RELATED [BAMS:V] +synonym: "motor nucleus of trigeminal nerve" EXACT [FMA:54562] +synonym: "motor nucleus V" EXACT [ZFA:0001365] +synonym: "motor trigeminal nucleus" EXACT [BTO:0001075] +synonym: "nucleus motorius nervi trigeminalis" RELATED LATIN [NeuroNames:559] +synonym: "nucleus motorius nervi trigemini" EXACT LATIN [FMA:54562, FMA:TA] +synonym: "nucleus motorius nervi trigemini" RELATED LATIN [http://en.wikipedia.org/wiki/Trigeminal_motor_nucleus] +synonym: "nucleus motorius trigeminalis" RELATED LATIN [NeuroNames:559] +synonym: "nV" EXACT [ZFA:0001365] +synonym: "trigeminal motor nuclei" EXACT PLURAL [TAO:0001365] +synonym: "trigeminal motor nucleus" EXACT [ZFA:0001365] +synonym: "trigeminal V motor nucleus" EXACT [MA:0001029] +xref: BAMS:Mo5 +xref: BAMS:V +xref: BIRNLEX:1222 +xref: BM:Vm +xref: BTO:0001075 +xref: DHBA:12429 +xref: EMAPA:35882 +xref: EV:0100273 +xref: FMA:54562 +xref: HBA:9206 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=559 {source="BIRNLEX:1222"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=559 +xref: http://en.wikipedia.org/wiki/Trigeminal_motor_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0228700 +xref: http://www.snomedbrowser.com/Codes/Details/38390003 +xref: MA:0001029 +xref: MBA:621 +xref: NCIT:C33140 +xref: TAO:0001365 +xref: UMLS:C0228700 {source="BIRNLEX:1222"} +xref: UMLS:C0228700 {source="ncithesaurus:Motor_Nucleus_of_the_Trigeminal_Nerve"} +xref: VHOG:0001355 +xref: ZFA:0001365 +is_a: UBERON:0002925 ! trigeminal nucleus +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009662 ! hindbrain nucleus +relationship: contributes_to_morphology_of UBERON:0000988 ! pons +relationship: part_of UBERON:0003023 {source="NIF"} ! pontine tegmentum + +[Term] +id: UBERON:0002634 +name: anterior nucleus of hypothalamus +def: "a loose heterogeneous collection of cells in the anterior hypothalamus, continuous rostrally with the medial and lateral preoptic areas and caudally with the tuber cinereum" [MESH:A08.186.211.730.317.357.342.063, MP:0008848] +subset: pheno_slim +subset: uberon_slim +synonym: "AH" BROAD ABBREVIATION [BIRNLEX:1226, NIFSTD:NeuroNames_abbrevSource] +synonym: "anterior hypothalamic area" RELATED [FMA:62319] +synonym: "anterior hypothalamic area anterior part" RELATED [BAMS:AHA] +synonym: "anterior hypothalamic area, anterior part" RELATED [BAMS:AHA] +synonym: "anterior hypothalamic nucleus" EXACT [FMA:62319] +synonym: "anterior nucleus of the hypothalamus" RELATED [NeuroNames:386] +synonym: "area hypothalamica rostralis" EXACT LATIN [FMA:62319, FMA:TA] +synonym: "fundamental gray substance" EXACT [FMA:62319] +synonym: "nucleus anterior hypothalami" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_hypothalamic_nucleus] +synonym: "nucleus anterior hypothalami" RELATED [BTO:0002450] +synonym: "nucleus hypothalamicus anterior" RELATED LATIN [NeuroNames:386] +synonym: "parvocellular nucleus of hypothalamus" EXACT [FMA:62319] +xref: BAMS:AHN +xref: BIRNLEX:1226 +xref: BM:Die-Hy-HAA +xref: BTO:0002450 +xref: DHBA:10475 +xref: DMBA:15662 +xref: EMAPA:37409 {source="MA:th"} +xref: EV:0100231 +xref: FMA:62319 +xref: GAID:642 +xref: HBA:12903 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=386 {source="BIRNLEX:1226"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=386 +xref: http://en.wikipedia.org/wiki/Anterior_hypothalamic_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0020653 +xref: http://www.snomedbrowser.com/Codes/Details/369133009 +xref: MBA:88 +xref: MESH:A08.186.211.730.385.357.342.063 +xref: UMLS:C0020653 {source="BIRNLEX:1226"} +is_a: UBERON:0007251 ! preoptic nucleus +disjoint_from: UBERON:0002706 {source="lexical"} ! posterior nucleus of hypothalamus + +[Term] +id: UBERON:0002635 +name: obsolete regional part of midbrain tegmentum +def: "A multi-tissue structure that is part of a midbrain tegmentum." [OBOL:automatic] +subset: non_informative +synonym: "midbrain tegmentum segment" EXACT [FMA:62399] +synonym: "segment of midbrain tegmentum" EXACT [BIRNLEX:1227] +is_obsolete: true +consider: BIRNLEX:1227 +consider: FMA:62399 + +[Term] +id: UBERON:0002636 +name: lateral pulvinar nucleus +synonym: "lateral pulvinar nucleus of thalamus" EXACT [FMA:62181] +synonym: "LPul" BROAD ABBREVIATION [BIRNLEX:1228, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus pulvinaris lateralis" EXACT [BIRNLEX:1228] +synonym: "nucleus pulvinaris lateralis (Hassler)" EXACT [BIRNLEX:1228] +synonym: "nucleus pulvinaris lateralis thalami" EXACT [BIRNLEX:1228] +synonym: "nucleus pulvinaris thalami, pars lateralis" EXACT [BIRNLEX:1228] +xref: BAMS:LPul +xref: BIRNLEX:1228 +xref: BM:Die-Th-Pl-Pll +xref: DHBA:10412 +xref: FMA:62181 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=330 {source="BIRNLEX:1228"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=330 +xref: http://linkedlifedata.com/resource/umls/id/C0228345 +xref: UMLS:C0228345 {source="BIRNLEX:1228"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +disjoint_from: UBERON:0002638 {source="lexical"} ! medial pulvinar nucleus +relationship: part_of UBERON:0002981 {source="FMA"} ! pulvinar nucleus + +[Term] +id: UBERON:0002637 +name: ventral anterior nucleus of thalamus +def: "The ventral anterior nucleus is a nucleus of the thalamus." [http://en.wikipedia.org/wiki/Ventral_anterior_nucleus] +subset: uberon_slim +synonym: "nucleus lateropolaris" EXACT [BIRNLEX:1232] +synonym: "nucleus ventralis anterior" EXACT [BIRNLEX:1232] +synonym: "nucleus ventralis anterior thalami" EXACT [BIRNLEX:1232] +synonym: "nucleus ventralis anterior thalami" RELATED LATIN [http://en.wikipedia.org/wiki/Ventral_anterior_nucleus] +synonym: "nucleus ventralis thalami anterior" EXACT [BIRNLEX:1232] +synonym: "VA" BROAD ABBREVIATION [BIRNLEX:1232, NIFSTD:NeuroNames_abbrevSource] +synonym: "ventral anterior nucleus" EXACT [FMA:62184] +synonym: "ventral anterior nucleus of thalamus" EXACT [FMA:62184] +synonym: "ventral anterior nucleus of the thalamus" RELATED [BAMS:VA] +synonym: "ventral anterior thalamic nucleus" EXACT [FMA:62184] +synonym: "ventroanterior nucleus of the thalamus" EXACT [] +synonym: "ventroanterior thalamic nucleus" EXACT [BIRNLEX:1232] +xref: BAMS:VA +xref: BIRNLEX:1232 +xref: BM:Die-Th-VA +xref: BTO:0002468 +xref: DHBA:10417 +xref: DMBA:16427 +xref: EMAPA:35133 +xref: EV:0100199 +xref: FMA:62184 +xref: HBA:4418 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=334 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=334 {source="BIRNLEX:1232"} +xref: http://en.wikipedia.org/wiki/Ventral_anterior_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0175276 +xref: http://www.snomedbrowser.com/Codes/Details/279131008 +xref: NCIT:C33861 +xref: UMLS:C0175276 {source="BIRNLEX:1232"} +xref: UMLS:C0175276 {source="ncithesaurus:Ventroanterior_Nucleus_of_the_Thalamus"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0002776 {source="BTO", source="FMA", source="NIF"} ! ventral nuclear group + +[Term] +id: UBERON:0002638 +name: medial pulvinar nucleus +synonym: "MPul" BROAD ABBREVIATION [BIRNLEX:1233, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus pulvinaris medialis" EXACT [BIRNLEX:1233] +synonym: "nucleus pulvinaris medialis thalami" EXACT [BIRNLEX:1233] +synonym: "nucleus pulvinaris thalami, pars medialis" EXACT [BIRNLEX:1233] +xref: BAMS:MPul +xref: BIRNLEX:1233 +xref: BM:Die-Th-Pl-Plm +xref: DHBA:10411 +xref: FMA:62182 +xref: HBA:4412 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=331 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=331 {source="BIRNLEX:1233"} +xref: http://linkedlifedata.com/resource/umls/id/C0228344 +xref: UMLS:C0228344 {source="BIRNLEX:1233"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0002981 ! pulvinar nucleus + +[Term] +id: UBERON:0002639 +name: midbrain reticular formation +def: "Part of the reticular formation located in the midbrain tegmentum" [BIRNLEX:1235] +synonym: "formatio reticularis mesencephali" RELATED LATIN [NeuroNames:501] +synonym: "formatio reticularis tegmentalis" RELATED LATIN [NeuroNames:501] +synonym: "formatio reticularis tegmenti mesencephali" RELATED LATIN [NeuroNames:501] +synonym: "MBRF" BROAD ABBREVIATION [BIRNLEX:1235, NIFSTD:NeuroNames_abbrevSource] +synonym: "reticular formation of midbrain" EXACT [FMA:62406] +synonym: "substantia reticularis mesencephali" RELATED LATIN [NeuroNames:501] +synonym: "tegmental reticular formation" EXACT [FMA:62406] +xref: BAMS:MBRF +xref: BIRNLEX:1235 +xref: BM:MB-MBRF +xref: DHBA:12239 +xref: EMAPA:35570 +xref: FMA:62406 +xref: HBA:9018 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=501 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=501 {source="BIRNLEX:1235"} +xref: http://linkedlifedata.com/resource/umls/id/C0228394 +xref: http://www.snomedbrowser.com/Codes/Details/369234009 +xref: UMLS:C0228394 {source="BIRNLEX:1235"} +is_a: UBERON:0007245 ! nuclear complex of neuraxis +is_a: UBERON:0019267 ! gray matter of midbrain +relationship: has_part UBERON:0002142 ! pedunculopontine tegmental nucleus +relationship: part_of UBERON:0001943 ! midbrain tegmentum +relationship: part_of UBERON:0002275 ! reticular formation + +[Term] +id: UBERON:0002640 +name: cuneocerebellar tract +def: "White matter tract that originates from the cuneate and external cuneate nuclei. It relays ascending spinal fibers in the dorsal funiculus and conveys information from forelimbs to the cerebellum." [BIRNLEX:1238] +subset: uberon_slim +synonym: "cuneocerebellar fibers" EXACT [BIRNLEX:1238] +synonym: "tractus cuneocerebelli" RELATED LATIN [NeuroNames:803] +xref: BAMS:ccb +xref: BAMS:cct +xref: BIRNLEX:1238 +xref: Cuneocerebellar:tract +xref: DHBA:12745 +xref: FMA:72637 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=803 {source="BIRNLEX:1238"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=803 +xref: http://linkedlifedata.com/resource/umls/id/C0175556 +xref: MBA:499 +xref: UMLS:C0175556 {source="BIRNLEX:1238"} +is_a: UBERON:0007702 ! tract of brain +relationship: part_of UBERON:0014649 ! white matter of medulla oblongata + +[Term] +id: UBERON:0002641 +name: oral pulvinar nucleus +synonym: "anterior pulvinar nucleus" EXACT [FMA:62180] +synonym: "nucleus pulvinaris anterior" EXACT LATIN [FMA:62180, FMA:TA] +synonym: "nucleus pulvinaris oralis" EXACT [BIRNLEX:1239] +synonym: "nucleus pulvinaris oralis thalami" EXACT [BIRNLEX:1239] +synonym: "OPul" BROAD ABBREVIATION [BIRNLEX:1239, NIFSTD:NeuroNames_abbrevSource] +synonym: "oral nuclear group of pulvinar" EXACT [FMA:62180] +synonym: "oral part of pulvinar" EXACT [FMA:62180] +synonym: "oral portion of pulvinar" EXACT [FMA:62180] +xref: BAMS:APul +xref: BAMS:OPul +xref: BIRNLEX:1239 +xref: BM:Die-Th-Pl-Pla +xref: DHBA:10410 +xref: FMA:62180 +xref: HBA:4411 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=329 {source="BIRNLEX:1239"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=329 +xref: http://linkedlifedata.com/resource/umls/id/C0262299 +xref: UMLS:C0262299 {source="BIRNLEX:1239"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0002981 ! pulvinar nucleus + +[Term] +id: UBERON:0002642 +name: cuneate fasciculus of medulla +def: "Part of cuneate fasciculus found in the medulla" [BIRNLEX:1242] +synonym: "fasciculus cuneatus (myelencephali)" EXACT LATIN [FMA:72623, FMA:TA] +synonym: "nucleus pulvinaris oromedialis (Hassler)" RELATED LATIN [NeuroNames:2190] +xref: BAMS:cu +xref: BIRNLEX:1242 +xref: FMA:72623 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2190 {source="BIRNLEX:1242"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2190 +xref: http://linkedlifedata.com/resource/umls/id/C0228521 +xref: UMLS:C0228521 {source="BIRNLEX:1242"} +is_a: UBERON:0005832 ! cuneate fasciculus +is_a: UBERON:0005838 ! fasciculus of brain +is_a: UBERON:0007702 ! tract of brain +intersection_of: UBERON:0005832 ! cuneate fasciculus +intersection_of: part_of UBERON:0001896 ! medulla oblongata +relationship: part_of UBERON:0001896 ! medulla oblongata + +[Term] +id: UBERON:0002643 +name: decussation of medial lemniscus +def: "The sensory decussation or decussation of the lemniscus is a decussation or cross over of axons from the gracile nucleus and cuneate nucleus. The fibres of this decussation are called the internal arcuate fibres and are found at the superior aspect of the closed medulla superior to the motor decussation. It is part of the second neuron in the Posterior column-medial lemniscus pathway. [WP,unvetted]." [http://en.wikipedia.org/wiki/Sensory_decussation] +subset: uberon_slim +synonym: "decussatio lemnisci medialis" RELATED LATIN [http://en.wikipedia.org/wiki/Sensory_decussation] +synonym: "decussatio lemniscorum" RELATED LATIN [NeuroNames:788] +synonym: "decussatio lemniscorum medialium" RELATED LATIN [NeuroNames:788] +synonym: "decussatio sensoria" RELATED LATIN [NeuroNames:788] +synonym: "decussation of lemnisci" EXACT [FMA:72622] +synonym: "decussation of lemniscus" EXACT [FMA:72622] +synonym: "decussation of medial lemnisci" EXACT [FMA:72622] +synonym: "decussation of the medial lemniscus" RELATED [NeuroNames:788] +synonym: "medial lemniscus decussation" EXACT [FMA:72622] +synonym: "medullary sensory decussation" EXACT [FMA:72622] +synonym: "sensory decussation" EXACT [FMA:72622] +xref: BAMS:mlx +xref: BIRNLEX:1245 +xref: BM:Me-LMX +xref: DHBA:12732 +xref: DMBA:17777 +xref: FMA:72622 +xref: HBA:265505622 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=788 {source="BIRNLEX:1245"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=788 +xref: http://linkedlifedata.com/resource/umls/id/C0175544 +xref: Sensory:decussation +xref: UMLS:C0175544 {source="BIRNLEX:1245"} +is_a: UBERON:0007418 ! neural decussation +relationship: part_of UBERON:0001896 ! medulla oblongata + +[Term] +id: UBERON:0002644 +name: intermediate orbital gyrus +xref: BAMS:IOrG +xref: BIRNLEX:1247 +xref: FMA:80183 +xref: OldNeuroNames:-1278177547 {source="BIRNLEX:1247"} +is_a: UBERON:0007193 ! orbital gyrus + +[Term] +id: UBERON:0002645 +name: densocellular part of medial dorsal nucleus +synonym: "densocellular part of the medial dorsal nucleus" RELATED [NeuroNames:316] +synonym: "MDD" BROAD ABBREVIATION [BIRNLEX:1255, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus medialis dorsalis paralamellaris (Hassler)" EXACT [BIRNLEX:1255] +synonym: "nucleus medialis dorsalis, pars densocellularis" EXACT [BIRNLEX:1255] +xref: BIRNLEX:1255 +xref: DHBA:10399 +xref: FMA:62163 +xref: HBA:4404 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=316 {source="BIRNLEX:1255"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=316 +xref: http://linkedlifedata.com/resource/umls/id/C0262218 +xref: UMLS:C0262218 {source="BIRNLEX:1255"} +is_a: UBERON:0019269 ! gray matter of diencephalon +relationship: part_of UBERON:0002739 {source="NIFSTD"} ! medial dorsal nucleus of thalamus + +[Term] +id: UBERON:0002646 +name: dorsal longitudinal fasciculus of medulla +def: "Part of dorsal longitudinal fasciculus located in the medulla" [BIRNLEX:1257] +synonym: "bundle of Schutz of medulla" EXACT [OBOL:automatic] +synonym: "dorsal longitudinal fasciculus of the medulla" RELATED [NeuroNames:783] +synonym: "fasciculus longitudinalis dorsalis (myelencephali)" RELATED LATIN [NeuroNames:783] +synonym: "fasciculus of Schutz of medulla" EXACT [OBOL:automatic] +synonym: "medulla bundle of Schutz" EXACT [OBOL:automatic] +synonym: "medulla dorsal longitudinal fasciculus" EXACT [OBOL:automatic] +synonym: "medulla fasciculus of Schutz" EXACT [OBOL:automatic] +synonym: "medulla posterior longitudinal fasciculus" EXACT [OBOL:automatic] +synonym: "posterior longitudinal fasciculus of medulla" EXACT [OBOL:automatic] +xref: BAMS:dlfm +xref: BIRNLEX:1257 +xref: FMA:72617 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=783 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=783 {source="BIRNLEX:1257"} +xref: http://linkedlifedata.com/resource/umls/id/C0228537 +xref: UMLS:C0228537 {source="BIRNLEX:1257"} +is_a: UBERON:0005838 {source="FMA"} ! fasciculus of brain +relationship: part_of UBERON:0001896 ! medulla oblongata + +[Term] +id: UBERON:0002647 +name: magnocellular part of medial dorsal nucleus +synonym: "dorsomedial thalamic nucleus, magnocellular part" EXACT [FMA:62161] +synonym: "magnocellular mediodorsal nucleus" EXACT [FMA:62161] +synonym: "magnocellular nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62161] +synonym: "magnocellular part of dorsomedial nucleus" EXACT [FMA:62161] +synonym: "magnocellular part of mediodorsal nucleus" EXACT [BIRNLEX:1262] +synonym: "magnocellular part of the medial dorsal nucleus" RELATED [NeuroNames:314] +synonym: "MDM" BROAD ABBREVIATION [BIRNLEX:1262, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus medialis dorsalis, pars magnocellularis" EXACT [BIRNLEX:1262] +synonym: "nucleus medialis fibrosus" EXACT [BIRNLEX:1262] +synonym: "nucleus medialis fibrosus (hassler)" EXACT [BIRNLEX:1262] +synonym: "pars magnocellularis nuclei mediodorsalis thalami" EXACT LATIN [FMA:62161, FMA:TA] +xref: BIRNLEX:1262 +xref: DHBA:10400 +xref: EMAPA:35544 +xref: FMA:62161 +xref: HBA:4403 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=314 {source="BIRNLEX:1262"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=314 +xref: http://linkedlifedata.com/resource/umls/id/C0228331 +xref: MBA:636 +xref: UMLS:C0228331 {source="BIRNLEX:1262"} +is_a: UBERON:0019269 ! gray matter of diencephalon +relationship: part_of UBERON:0002739 {source="FMA"} ! medial dorsal nucleus of thalamus + +[Term] +id: UBERON:0002648 +name: anterior median eminence +synonym: "AME" BROAD ABBREVIATION [BIRNLEX:1264, NIFSTD:NeuroNames_abbrevSource] +synonym: "eminentia mediana anterior" RELATED LATIN [NeuroNames:403] +xref: BAMS:AME +xref: BIRNLEX:1264 +xref: FMA:74870 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=403 {source="BIRNLEX:1264"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=403 +xref: http://linkedlifedata.com/resource/umls/id/C0175323 +xref: UMLS:C0175323 {source="BIRNLEX:1264"} +is_a: UBERON:0002616 ! regional part of brain +disjoint_from: UBERON:0002652 {source="lexical"} ! posterior median eminence +relationship: part_of UBERON:0002197 ! median eminence of neurohypophysis + +[Term] +id: UBERON:0002649 +name: dorsolateral fasciculus of medulla +def: "Part of Lissauer's tract located in the medulla" [BIRNLEX:1267] +subset: uberon_slim +synonym: "dorsolateral fasciculus" EXACT [BIRNLEX:1267] +synonym: "dorsolateral fasciculus of the medulla" RELATED [NeuroNames:782] +synonym: "dorsolateral tract" EXACT [FMA:72616] +synonym: "fasciculus dorsolateralis" RELATED LATIN [NeuroNames:782] +synonym: "lissauer's tract" EXACT [FMA:72616] +synonym: "posterolateral fasciculus" EXACT [FMA:72616] +synonym: "posterolateral tract" EXACT [FMA:72616] +synonym: "tract of Lissauer" EXACT [] +synonym: "tractus posterolateralis" EXACT LATIN [FMA:72616, FMA:TA] +synonym: "zona Lissauer" RELATED LATIN [NeuroNames:782] +synonym: "zone of Lissauer" EXACT [] +xref: BAMS:d1 +xref: BAMS:dfm +xref: BIRNLEX:1267 +xref: FMA:72616 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=782 {source="BIRNLEX:1267"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=782 +xref: http://linkedlifedata.com/resource/umls/id/C0228587 +xref: http://www.snomedbrowser.com/Codes/Details/369287009 +xref: Lissauer's:tract +xref: NCIT:C33800 +xref: UMLS:C0228587 {source="ncithesaurus:Tract_of_Lissauer"} +xref: UMLS:C0228587 {source="BIRNLEX:1267"} +is_a: UBERON:0007702 {source="FMA"} ! tract of brain +relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata + +[Term] +id: UBERON:0002650 +name: paralaminar part of medial dorsal nucleus +synonym: "dorsomedial thalamic nucleus, paralaminar part" EXACT [FMA:62160] +synonym: "MDPL" BROAD ABBREVIATION [BIRNLEX:1276, NIFSTD:NeuroNames_abbrevSource] +synonym: "mediodorsal thalamic nucleus paralaminar part" RELATED [BAMS:MDPL] +synonym: "mediodorsal thalamic nucleus, paralaminar part" EXACT [BIRNLEX:1276] +synonym: "nucleus medialis dorsalis caudalis (hassler)" EXACT [BIRNLEX:1276] +synonym: "nucleus medialis dorsalis thalami, pars multiformis" EXACT [BIRNLEX:1276] +synonym: "nucleus medialis dorsalis, pars multiformis" EXACT [BIRNLEX:1276] +synonym: "nucleus medialis dorsalis, pars paralaminaris" EXACT [BIRNLEX:1276] +synonym: "paralaminar part" RELATED [NeuroNames:313] +synonym: "paralaminar part of dorsomedial nucleus" EXACT [FMA:62160] +synonym: "paralaminar part of medial dorsal nucleus of thalamus" EXACT [FMA:62160] +synonym: "paralaminar part of the medial dorsal nucleus" RELATED [NeuroNames:313] +synonym: "pars paralaminaris nuclei mediodorsalis thalami" EXACT LATIN [FMA:62160, FMA:TA] +synonym: "pars paralaminaris of medial dorsal nucleus of thalamus" EXACT [FMA:62160] +synonym: "ventral mediodorsal nucleus" EXACT [FMA:62160] +xref: BAMS:MDPL +xref: BIRNLEX:1276 +xref: FMA:62160 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=313 {source="BIRNLEX:1276"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=313 +xref: http://linkedlifedata.com/resource/umls/id/C0228332 +xref: UMLS:C0228332 {source="BIRNLEX:1276"} +is_a: UBERON:0019269 ! gray matter of diencephalon +relationship: part_of UBERON:0002739 {source="FMA"} ! medial dorsal nucleus of thalamus + +[Term] +id: UBERON:0002651 +name: anterior horn of lateral ventricle +def: "Part of the lateral ventricle that extends anteriorly into the frontal lobes, bordered by the head of the caudate nucleus on the lateral side (Adapted from Heimer, 1996)" [BIRNLEX:1279] +subset: uberon_slim +synonym: "anterior horn of lateral ventricle" EXACT [FMA:74520] +synonym: "cornu anterius" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_horn_of_lateral_ventricle] +synonym: "cornu anterius (ventriculi lateralis)" EXACT LATIN [FMA:74520, FMA:TA] +synonym: "cornu anterius ventriculi lateralis" EXACT LATIN [FMA:74520, FMA:TA] +synonym: "cornu frontale (ventriculi lateralis)" EXACT LATIN [FMA:74520, FMA:TA] +synonym: "cornu frontale ventriculi lateralis" EXACT LATIN [FMA:74520, FMA:TA] +synonym: "frontal horn of lateral ventricle" EXACT [FMA:74520] +synonym: "ventriculus lateralis, cornu anterius" EXACT LATIN [FMA:74520, FMA:TA] +xref: BAMS:FLV +xref: BIRNLEX:1279 +xref: DHBA:10597 +xref: EMAPA:17770 +xref: FMA:74520 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=220 +xref: http://en.wikipedia.org/wiki/Anterior_horn_of_lateral_ventricle +xref: http://linkedlifedata.com/resource/umls/id/C0152281 +xref: http://linkedlifedata.com/resource/umls/id/C1281033 +xref: http://www.snomedbrowser.com/Codes/Details/279247001 +xref: NCIT:C32637 +xref: UMLS:C0152281 {source="ncithesaurus:Frontal_Horn_of_the_Lateral_Ventricle"} +xref: UMLS:C1281033 {source="BIRNLEX:1279"} +is_a: UBERON:0002285 ! telencephalic ventricle +disjoint_from: UBERON:0004672 {source="lexical"} ! posterior horn lateral ventricle + +[Term] +id: UBERON:0002652 +name: posterior median eminence +synonym: "eminentia mediana posterior" RELATED LATIN [NeuroNames:404] +synonym: "PME" BROAD ABBREVIATION [BIRNLEX:1280, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:PME +xref: BIRNLEX:1280 +xref: DHBA:12860 +xref: FMA:74875 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=404 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=404 {source="BIRNLEX:1280"} +xref: http://linkedlifedata.com/resource/umls/id/C0175323 +xref: UMLS:C0175323 {source="BIRNLEX:1280"} +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0002197 ! median eminence of neurohypophysis + +[Term] +id: UBERON:0002653 +name: gracile fasciculus of medulla +def: "Part of gracile fasiculus located in the medulla" [BIRNLEX:1282] +synonym: "column of Goll" EXACT [] +synonym: "fasciculus dorsolateralis gracilis (Golli)" RELATED LATIN [NeuroNames:790] +synonym: "fasciculus gracilis (myelencephali)" RELATED LATIN [NeuroNames:790] +synonym: "fasciculus of goll" EXACT [] +synonym: "Goll's tract" EXACT [FMA:72624] +synonym: "gracile fascicle (Gall)" RELATED [BIRNLEX:1282] +synonym: "gracile fascicle (Goll)" RELATED [NeuroNames:790] +synonym: "gracile fascicle of medulla" EXACT [FMA:72624] +synonym: "gracile fasciculus of the medulla" RELATED [NeuroNames:790] +synonym: "medulla segment of fasciculus gracilis" EXACT [FMA:72624] +synonym: "medulla segment of gracile fasciculus" EXACT [FMA:72624] +synonym: "tract of Gall" RELATED [] +xref: BIRNLEX:1282 +xref: FMA:72624 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=790 {source="BIRNLEX:1282"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=790 +xref: http://linkedlifedata.com/resource/umls/id/C0228522 +xref: UMLS:C0228522 {source="BIRNLEX:1282"} +is_a: UBERON:0005821 ! gracile fasciculus +is_a: UBERON:0005838 ! fasciculus of brain +intersection_of: UBERON:0005821 ! gracile fasciculus +intersection_of: part_of UBERON:0001896 ! medulla oblongata +relationship: part_of UBERON:0001896 ! medulla oblongata + +[Term] +id: UBERON:0002654 +name: parvicellular part of medial dorsal nucleus +synonym: "dorsomedial thalamic nucleus, parvicellular part" EXACT [FMA:62162] +synonym: "lateral mediodorsal nucleus" EXACT [FMA:62162] +synonym: "lateral nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62162] +synonym: "MDPC" BROAD ABBREVIATION [BIRNLEX:1283, NIFSTD:NeuroNames_abbrevSource] +synonym: "mediodorsal thalamic nucleus, pars fasciculosa" EXACT [BIRNLEX:1283] +synonym: "nucleus medialis dorsalis fasciculosis (hassler)" EXACT [BIRNLEX:1283] +synonym: "nucleus medialis dorsalis nucleus fasciculosis (hassler)" EXACT [BIRNLEX:1283] +synonym: "nucleus medialis dorsalis nucleus fasciculosus (Hassler)" RELATED LATIN [NeuroNames:315] +synonym: "nucleus medialis dorsalis, pars parvicellularis" EXACT [BIRNLEX:1283] +synonym: "nucleus medialis dorsalis, pars parvocellularis" RELATED LATIN [NeuroNames:315] +synonym: "pars parvocellularis lateralis nuclei mediodorsalis thalami" EXACT LATIN [FMA:62162, FMA:TA] +synonym: "pars principalis nuclei ventralis anterior thalami" EXACT LATIN [FMA:62162, FMA:TA] +synonym: "parvicellular part of dorsomedial nucleus" EXACT [FMA:62162] +synonym: "parvicellular part of the medial dorsal nucleus" RELATED [NeuroNames:315] +synonym: "parvocellular nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62162] +synonym: "principal division of ventral anterior nucleus of thalamus" EXACT [FMA:62162] +xref: BAMS:MDPC +xref: BIRNLEX:1283 +xref: FMA:62162 +xref: HBA:4419 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=315 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=315 {source="BIRNLEX:1283"} +xref: http://linkedlifedata.com/resource/umls/id/C0228330 +xref: UMLS:C0228330 {source="BIRNLEX:1283"} +is_a: UBERON:0019269 ! gray matter of diencephalon +relationship: part_of UBERON:0002739 {source="NIFSTD"} ! medial dorsal nucleus of thalamus +relationship: part_of UBERON:0002739 {source="FMA"} ! medial dorsal nucleus of thalamus + +[Term] +id: UBERON:0002655 +name: body of lateral ventricle +def: "Part of lateral ventricle consisting of the central portion that lies dorsally, bounded by the thalamus on the ventral side (Adapted from Heimer, 1996)" [BIRNLEX:1287] +subset: uberon_slim +synonym: "central part of lateral ventricle" EXACT [FMA:83703] +synonym: "corpus ventriculi lateralis" EXACT LATIN [FMA:83703, FMA:TA] +synonym: "lateral ventricular body" EXACT [FMA:83703] +synonym: "pars centralis (ventriculi lateralis)" EXACT LATIN [FMA:83703, FMA:TA] +synonym: "pars centralis ventriculi lateralis" EXACT LATIN [FMA:83703, FMA:TA] +synonym: "pars centralis ventriculi lateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Body_of_lateral_ventricle] +synonym: "ventriculus lateralis, corpus" EXACT LATIN [FMA:83703, FMA:TA] +synonym: "ventriculus lateralis, pars centralis" EXACT LATIN [FMA:83703, FMA:TA] +xref: BIRNLEX:1287 +xref: DHBA:10598 +xref: FMA:83703 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=221 +xref: http://en.wikipedia.org/wiki/Body_of_lateral_ventricle +xref: http://linkedlifedata.com/resource/umls/id/C0152280 +xref: http://www.snomedbrowser.com/Codes/Details/279246005 +xref: NCIT:C32218 +xref: UMLS:C0152280 {source="BIRNLEX:1287"} +xref: UMLS:C0152280 {source="ncithesaurus:Body_of_the_Lateral_Ventricle"} +is_a: UBERON:0002285 ! telencephalic ventricle + +[Term] +id: UBERON:0002656 +name: periamygdaloid area +synonym: "cortical amygdaloid nucleus" RELATED [BIRNLEX:1291] +synonym: "gyrus semilunaris" RELATED LATIN [NeuroNames:166] +synonym: "para-amygdaloid cortex" RELATED [FMA:62485] +synonym: "periamygdalar area" RELATED [NeuroNames:166] +synonym: "periamygdaloid area" EXACT HUMAN_PREFERRED [BIRNLEX:1291] +synonym: "periamygdaloid cortex" RELATED [FMA:62485] +synonym: "periamygdaloid cortex" RELATED [BIRNLEX:1291] +synonym: "periamygdaloid region" EXACT [FMA:62485] +synonym: "periamygdaloid region" RELATED [BIRNLEX:1291] +synonym: "posterior amygdalar nucleus" RELATED [BAMS:PA] +synonym: "posterior nucleus of the amygdala" RELATED [BAMS:PA] +synonym: "regio periamygdalaris" RELATED LATIN [NeuroNames:166] +synonym: "semilunar gyrus" EXACT [FMA:62485] +synonym: "semilunar gyrus" RELATED [BIRNLEX:1291] +synonym: "ventral cortical nucleus of amygdala" EXACT [FMA:62485] +synonym: "ventral cortical nucleus of amygdala" RELATED [BIRNLEX:1291] +xref: BAMS:PA +xref: BAMS:PAM +xref: BAMS:SLG +xref: BIRNLEX:1291 +xref: BM:Tel-Cx-PAM +xref: DHBA:10373 +xref: DHBA:12169 +xref: FMA:62485 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=166 {source="BIRNLEX:1291"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=166 +xref: http://linkedlifedata.com/resource/umls/id/C0458328 +xref: http://www.snomedbrowser.com/Codes/Details/279214005 +xref: UMLS:C0458328 {source="BIRNLEX:1291"} +is_a: UBERON:0005401 ! cerebral hemisphere gray matter +relationship: part_of UBERON:0002973 {source="FMA"} ! parahippocampal gyrus + +[Term] +id: UBERON:0002657 +name: posterior parahippocampal gyrus +def: "The posterior parahippocampal gyrus is a portion of the parahippocampal gyrus. It can show deterioration in Alzheimer's disease." [http://en.wikipedia.org/wiki/Posterior_parahippocampal_gyrus] +synonym: "gyrus parahippocampalis, pars posterior" RELATED LATIN [NeuroNames:169] +synonym: "parahippocampal gyrus (amaral)" EXACT [] +synonym: "parahippocampal gyrus (insausti)" EXACT [BIRNLEX:1295] +synonym: "parahippocampal gyrus, posterior division" RELATED [http://orcid.org/0000-0001-6755-0259] +synonym: "pHp" BROAD ABBREVIATION [FMA:67966, FMA:CMA] +xref: BAMS:PPHG +xref: BIRNLEX:1295 +xref: DHBA:12164 +xref: FMA:67966 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=169 {source="BIRNLEX:1295"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=169 +xref: http://en.wikipedia.org/wiki/Posterior_parahippocampal_gyrus +xref: http://linkedlifedata.com/resource/umls/id/C0694597 +xref: UMLS:C0694597 {source="BIRNLEX:1295"} +is_a: UBERON:0000200 ! gyrus +disjoint_from: UBERON:0022383 {source="lexical"} ! anterior parahippocampal gyrus +relationship: part_of UBERON:0002973 {source="FMA"} ! parahippocampal gyrus + +[Term] +id: UBERON:0002658 +name: medial lemniscus of midbrain +def: "Part of medial lemniscus located within the midbrain" [BIRNLEX:1296] +synonym: "lemniscus medialis (mesencephali)" RELATED LATIN [NeuroNames:533] +synonym: "medial lemniscus of the midbrain" RELATED [NeuroNames:533] +synonym: "midbrain medial lemniscus" EXACT [OBOL:automatic] +synonym: "MLMB" BROAD ABBREVIATION [BIRNLEX:1296, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:mlmb +xref: BIRNLEX:1296 +xref: FMA:72461 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=533 {source="BIRNLEX:1296"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=533 +xref: http://linkedlifedata.com/resource/umls/id/C0175406 +xref: http://www.snomedbrowser.com/Codes/Details/361568001 +xref: UMLS:C0175406 {source="BIRNLEX:1296"} +is_a: UBERON:0003001 {source="FMA"} ! nervous system lemniscus +relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum +relationship: part_of UBERON:0002623 {source="NIFSTD"} ! cerebral peduncle +relationship: part_of UBERON:0003002 {source="NIFSTD"} ! medial lemniscus + +[Term] +id: UBERON:0002659 +name: superior medullary velum +def: "The superior medullary velum (anterior medullary velum, valve of Vieussens) is a thin, transparent of white substance, which stretches between the superior cerebellar peduncles; on the dorsal surface of its lower half the folia and lingula are prolonged. It forms, together with the superior cerebellar peduncle, the roof of the upper part of the fourth ventricle; it is narrow above, where it passes beneath the inferior colliculi, and broader below, where it is continuous with the white substance of the superior vermis. A slightly elevated ridge, the fraenulum veli, descends upon its upper part from between the inferior colliculi, and on either side of this the trochlear nerve emerges. Blood is supplied by branches from the superior cerebellar artery. [WP,unvetted]." [http://en.wikipedia.org/wiki/Superior_medullary_velum] +subset: uberon_slim +synonym: "anterior medullary velum" EXACT [FMA:74508] +synonym: "rostral medullary velum" RELATED [NeuroNames:593] +synonym: "velum medullare anterius" RELATED LATIN [NeuroNames:593] +synonym: "velum medullare craniale" RELATED LATIN [NeuroNames:593] +synonym: "velum medullare rostralis" RELATED LATIN [NeuroNames:593] +synonym: "velum medullare superior" RELATED LATIN [NeuroNames:593] +synonym: "velum medullare superius" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_medullary_velum] +xref: BAMS:RMVE +xref: BAMS:SMV +xref: BAMS:smv +xref: BIRNLEX:1300 +xref: FMA:74508 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=593 {source="BIRNLEX:1300"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=593 +xref: http://en.wikipedia.org/wiki/Superior_medullary_velum +xref: http://linkedlifedata.com/resource/umls/id/C0152284 +xref: http://www.snomedbrowser.com/Codes/Details/369269006 +xref: UMLS:C0152284 {source="BIRNLEX:1300"} +is_a: UBERON:0019291 ! white matter of metencephalon +relationship: part_of UBERON:0002037 ! cerebellum + +[Term] +id: UBERON:0002660 +name: medial longitudinal fasciculus of midbrain +def: "A medial longitudinal fasciculus that is part of a midbrain [Automatically generated definition]." [OBOL:automatic] +synonym: "fasciculus longitudinalis medialis (mesencephali)" RELATED LATIN [NeuroNames:526] +synonym: "medial longitudinal fasciculus of the midbrain" RELATED [NeuroNames:526] +synonym: "midbrain medial longitudinal fasciculus" EXACT [OBOL:automatic] +synonym: "MLFMB" BROAD ABBREVIATION [BIRNLEX:1302, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:mlfmb +xref: BIRNLEX:1302 +xref: FMA:72454 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=526 {source="BIRNLEX:1302"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=526 +xref: http://linkedlifedata.com/resource/umls/id/C0262284 +xref: UMLS:C0262284 {source="BIRNLEX:1302"} +is_a: UBERON:0002309 ! medial longitudinal fasciculus +intersection_of: UBERON:0002309 ! medial longitudinal fasciculus +intersection_of: part_of UBERON:0001891 ! midbrain +relationship: part_of UBERON:0001943 ! midbrain tegmentum + +[Term] +id: UBERON:0002661 +name: superior frontal gyrus +def: "Component of the frontal lobe, lateral aspect. The rostral boundary is the first appearance of the superior frontal sulcus whereas the caudal boundary is the midpoint of the paracentral sulcus on the \"inflated\" surface. The medial and lateral boundaries are the medial aspect of the frontal lobe and the superior frontal sulcus respectively (Christine Fennema-Notestine)." [BIRNLEX:1303] +subset: efo_slim +subset: uberon_slim +synonym: "gyrus F1" RELATED LATIN [NeuroNames:83] +synonym: "gyrus frontalis primus" RELATED LATIN [NeuroNames:83] +synonym: "gyrus frontalis superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_frontal_gyrus] +synonym: "marginal gyrus" EXACT [FMA:61857] +synonym: "superior frontal convolution" EXACT [FMA:61857] +xref: BAMS:SFG +xref: BIRNLEX:1303 +xref: BTO:0004836 +xref: DHBA:12115 +xref: EFO:0001991 +xref: FMA:61857 +xref: HBA:4021 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=83 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=83 {source="BIRNLEX:1303"} +xref: http://en.wikipedia.org/wiki/Superior_frontal_gyrus +xref: http://linkedlifedata.com/resource/umls/id/C0152296 +xref: http://www.snomedbrowser.com/Codes/Details/279166005 +xref: NCIT:C33674 +xref: UMLS:C0152296 {source="BIRNLEX:1303"} +xref: UMLS:C0152296 {source="ncithesaurus:Superior_Frontal_Convolution"} +is_a: UBERON:0015593 ! frontal gyrus + +[Term] +id: UBERON:0002662 +name: medial pes lemniscus +synonym: "MPL" BROAD ABBREVIATION [BIRNLEX:1310, NIFSTD:NeuroNames_abbrevSource] +synonym: "pes lemniscus medialis" RELATED LATIN [NeuroNames:532] +synonym: "superficial pes lemniscus" EXACT [FMA:72460] +xref: BAMS:mpl +xref: BIRNLEX:1310 +xref: FMA:72460 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=532 {source="BIRNLEX:1310"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=532 +xref: http://linkedlifedata.com/resource/umls/id/C0175410 +xref: UMLS:C0175410 {source="BIRNLEX:1310"} +is_a: UBERON:0014891 ! brainstem white matter +is_a: UBERON:0016554 ! white matter of midbrain +disjoint_from: UBERON:0003010 {source="lexical"} ! lateral pes lemniscus +relationship: part_of UBERON:0001943 ! midbrain tegmentum + +[Term] +id: UBERON:0002663 +name: septal nuclear complex +def: "Collection of nerve cells in the medial forebrain lying generally in front of the anterior commissure (Maryann Martone)." [BIRNLEX:1313] +subset: uberon_slim +synonym: "nuclei septales" RELATED LATIN [http://en.wikipedia.org/wiki/Septal_nuclei] +synonym: "parolfactory nuclei" EXACT [FMA:61845] +synonym: "septal nuclei" EXACT [FMA:61845] +synonym: "septal nucleus" EXACT [MA:0002978] +xref: BAMS:SptN +xref: BIRNLEX:1313 +xref: DHBA:10350 +xref: EHDAA2:0004709 +xref: EMAPA:35763 +xref: FMA:61845 +xref: GAID:637 +xref: HBA:13002 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=259 +xref: http://linkedlifedata.com/resource/umls/id/C0036687 +xref: MA:0002978 +xref: MESH:A08.186.211.577.750.800 +xref: Septal:nuclei +xref: UMLS:C0036687 {source="BIRNLEX:1313"} +is_a: UBERON:0005401 ! cerebral hemisphere gray matter +is_a: UBERON:0007245 ! nuclear complex of neuraxis +intersection_of: UBERON:0007245 ! nuclear complex of neuraxis +intersection_of: part_of UBERON:0000446 ! septum of telencephalon +relationship: part_of UBERON:0000446 ! septum of telencephalon +relationship: part_of UBERON:0002743 {source="NIFSTD"} ! basal forebrain + +[Term] +id: UBERON:0002664 +name: lateral part of medial mammillary nucleus +synonym: "intercalated mammillary nucleus" EXACT [FMA:62346] +synonym: "intermediate mammillary nucleus" EXACT [FMA:62346] +synonym: "lateral mammillary nucleus (gagel)" EXACT [] +synonym: "lateral part of the medial mammillary nucleus" RELATED [NeuroNames:416] +synonym: "lateral subdivision of medial mammillary nucleus" EXACT [FMA:62346] +synonym: "medial mammillary nucleus lateral part" RELATED [BAMS:ML] +synonym: "medial mammillary nucleus, lateral part" EXACT [FMA:62346] +synonym: "MML" BROAD ABBREVIATION [BIRNLEX:1314, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus corporis mamillaris medialis, pars lateralis" RELATED LATIN [NeuroNames:416] +synonym: "nucleus intercalatus corporis mammillaris" RELATED LATIN [NeuroNames:416] +synonym: "nucleus intermedius corpus mamillaris" RELATED LATIN [NeuroNames:416] +xref: BAMS:ML +xref: BAMS:MML +xref: BIRNLEX:1314 +xref: DHBA:10500 +xref: DMBA:15731 +xref: FMA:62346 +xref: HBA:4673 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=416 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=416 {source="BIRNLEX:1314"} +xref: http://linkedlifedata.com/resource/umls/id/C0694606 +xref: UMLS:C0694606 {source="BIRNLEX:1314"} +is_a: UBERON:0019269 ! gray matter of diencephalon +relationship: part_of UBERON:0001939 {source="NIFSTD"} ! medial mammillary nucleus + +[Term] +id: UBERON:0002665 +name: supracallosal gyrus +subset: uberon_slim +synonym: "gyrus supracallosus" RELATED LATIN [NeuroNames:172] +synonym: "hippocampus supracommissuralis" RELATED LATIN [NeuroNames:172] +synonym: "supracommissural hippocampal rudiment" EXACT [FMA:61920] +synonym: "supracommissural hippocampus" EXACT [FMA:61920] +xref: BAMS:HiS +xref: BAMS:SCG +xref: BAMS:Supracallosal_gyrus +xref: BIRNLEX:1316 +xref: FMA:61920 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=172 {source="BIRNLEX:1316"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=172 +xref: http://linkedlifedata.com/resource/umls/id/C0152333 +xref: http://www.snomedbrowser.com/Codes/Details/369231001 +xref: Supracallosal:gyrus +xref: UMLS:C0152333 {source="BIRNLEX:1316"} +is_a: UBERON:0000200 {source="FMA"} ! gyrus +relationship: part_of UBERON:0002600 {source="FMA"} ! limbic lobe + +[Term] +id: UBERON:0002666 +name: mesencephalic tract of trigeminal nerve +synonym: "me5" BROAD ABBREVIATION [BIRNLEX:1318, NIFSTD:NeuroNames_abbrevSource] +synonym: "mesencephalic root of v" EXACT [] +synonym: "mesencephalic tract of the trigeminal nerve" RELATED [NeuroNames:596] +synonym: "mesencephalic trigeminal tract" EXACT [FMA:72489] +synonym: "midbrain tract of the trigeminal nerve" RELATED [BAMS:mtV] +synonym: "tractus mesencephalicus nervi trigeminalis" RELATED LATIN [NeuroNames:596] +synonym: "tractus mesencephalicus nervi trigemini" RELATED LATIN [NeuroNames:596] +synonym: "tractus mesencephalicus trigeminalis" RELATED LATIN [NeuroNames:596] +xref: BAMS:me5 +xref: BAMS:mtV +xref: BIRNLEX:1318 +xref: DHBA:12767 +xref: FMA:72489 +xref: HBA:265505458 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=596 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=596 {source="BIRNLEX:1318"} +xref: http://linkedlifedata.com/resource/umls/id/C0228703 +xref: http://www.snomedbrowser.com/Codes/Details/369263007 +xref: MBA:705 +xref: UMLS:C0228703 {source="BIRNLEX:1318"} +is_a: UBERON:0007702 ! tract of brain +relationship: part_of UBERON:0001943 ! midbrain tegmentum + +[Term] +id: UBERON:0002667 +name: lateral septal nucleus +def: "Regional part of the septal nuclei, lying dorsal and slightly lateral to the medial septal nucleus. The lateral septum receives the bulk of projections of areas projecting to the septal nuclei (Adapted from Brodal, 1981)." [BIRNLEX:1321] +synonym: "lateral parolfactory nucleus" EXACT [FMA:61878] +synonym: "lateral septal nucleus (cajal)" EXACT [BIRNLEX:1321] +synonym: "lateral septum" EXACT [BIRNLEX:1321] +synonym: "lateral septum nucleus" EXACT [BIRNLEX:1321] +synonym: "nucleus lateralis septi" RELATED LATIN [NeuroNames:261] +synonym: "nucleus septalis lateralis" RELATED LATIN [NeuroNames:261] +synonym: "nucleus septi lateralis" RELATED LATIN [NeuroNames:261] +xref: BAMS:LS +xref: BAMS:SLN +xref: BIRNLEX:1321 +xref: BM:Tel-Spt-SLN +xref: DHBA:10352 +xref: EMAPA:35486 +xref: FMA:61878 +xref: HBA:4303 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=261 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=261 {source="BIRNLEX:1321"} +xref: http://linkedlifedata.com/resource/umls/id/C0175232 +xref: MBA:242 +xref: UMLS:C0175232 {source="BIRNLEX:1321"} +is_a: UBERON:0009663 ! telencephalic nucleus +intersection_of: UBERON:0002308 ! nucleus of brain +intersection_of: part_of UBERON:0007628 ! lateral septal complex +relationship: part_of UBERON:0007628 ! lateral septal complex + +[Term] +id: UBERON:0002668 +name: oculomotor nerve root +def: "Initial segment of the occulomotor nerve as it leaves the midbrain." [BIRNLEX:1335] +synonym: "3nf" BROAD ABBREVIATION [BIRNLEX:1323, NIFSTD:NeuroNames_abbrevSource] +synonym: "central part of oculomotor nerve" EXACT [FMA:72457] +synonym: "fibrae nervi oculomotorii" RELATED LATIN [NeuroNames:529] +synonym: "oculomotor nerve fibers" EXACT [FMA:72457] +synonym: "oculomotor nerve tract" RELATED [] +synonym: "root of oculomotor nerve" EXACT [FMA:72457] +xref: BAMS:3nf +xref: BIRNLEX:1323 +xref: BIRNLEX:1335 +xref: DHBA:12376 +xref: DMBA:17736 +xref: FMA:72457 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=529 {source="BIRNLEX:1323"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=529 +xref: http://linkedlifedata.com/resource/umls/id/C0175408 +xref: UMLS:C0175408 {source="BIRNLEX:1323"} +is_a: UBERON:0006843 ! root of cranial nerve +intersection_of: UBERON:0006843 ! root of cranial nerve +intersection_of: extends_fibers_into UBERON:0001643 ! oculomotor nerve +relationship: extends_fibers_into UBERON:0001643 ! oculomotor nerve +relationship: part_of UBERON:0001943 ! midbrain tegmentum + +[Term] +id: UBERON:0002669 +name: anterior horizontal limb of lateral sulcus +synonym: "anterior branch of lateral sulcus" EXACT [FMA:83760] +synonym: "anterior horizontal limb of lateral fissure" EXACT [FMA:83760] +synonym: "anterior horizontal ramus of lateral fissure" EXACT [FMA:83760] +synonym: "anterior ramus of lateral cerebral sulcus" EXACT [FMA:83760] +synonym: "anterior ramus of lateral sulcus" RELATED [FMA:83760] +synonym: "horizontal limb of lateral fissure" EXACT [FMA:83760] +synonym: "horizontal ramus of sylvian fissure" EXACT [] +synonym: "ramus anterior horizontalis sulcus lateralis" RELATED LATIN [NeuroNames:69] +synonym: "ramus anterior sulci lateralis cerebri" EXACT LATIN [FMA:83760, FMA:TA] +synonym: "ramus anterior sulcus lateralis" RELATED LATIN [NeuroNames:69] +synonym: "ramus horizontalis fissurae sylvii" RELATED LATIN [NeuroNames:69] +synonym: "sulcus lateralis, ramus anterior" RELATED LATIN [NeuroNames:69] +xref: BAMS:ahls +xref: BIRNLEX:1327 +xref: FMA:83760 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=69 {source="BIRNLEX:1327"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=69 +xref: http://linkedlifedata.com/resource/umls/id/C0262190 +xref: UMLS:C0262190 {source="BIRNLEX:1327"} +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus +is_a: UBERON:0014639 ! frontal sulcus +disjoint_from: UBERON:0002910 {source="lexical"} ! posterior ascending limb of lateral sulcus +relationship: part_of UBERON:0002721 {source="NIFSTD"} ! lateral sulcus + +[Term] +id: UBERON:0002670 +name: anterior ascending limb of lateral sulcus +synonym: "anterior ascending limb of lateral fissure" EXACT [FMA:83759] +synonym: "anterior ascending limb of the lateral fissure" RELATED [NeuroNames:68] +synonym: "anterior ascending ramus of lateral sulcus" EXACT [FMA:83759] +synonym: "ascending branch of lateral sulcus" EXACT [FMA:83759] +synonym: "ascending ramus of lateral cerebral sulcus" EXACT [FMA:83759] +synonym: "ascending ramus of sylvian fissure" EXACT [] +synonym: "middle ramus of lateral fissure" EXACT [FMA:83759] +synonym: "ramus anterior ascendens fissurae lateralis" RELATED LATIN [NeuroNames:68] +synonym: "ramus ascendens sulci cerebri lateralis (Sylvii)" RELATED LATIN [NeuroNames:68] +synonym: "ramus ascendens sulci lateralis cerebri" EXACT LATIN [FMA:83759, FMA:TA] +synonym: "ramus ascendens sulcus lateralis" RELATED LATIN [NeuroNames:68] +synonym: "ramus verticalis fissurae sylvii" RELATED LATIN [NeuroNames:68] +synonym: "sulcus lateralis, ramus ascendens" RELATED LATIN [NeuroNames:68] +synonym: "superior branch of lateral fissure" EXACT [FMA:83759] +xref: BAMS:aals +xref: BIRNLEX:1330 +xref: FMA:83759 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=68 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=68 {source="BIRNLEX:1330"} +xref: http://linkedlifedata.com/resource/umls/id/C0262186 +xref: UMLS:C0262186 {source="BIRNLEX:1330"} +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus +is_a: UBERON:0014639 ! frontal sulcus +disjoint_from: UBERON:0002910 {source="lexical"} ! posterior ascending limb of lateral sulcus +relationship: part_of UBERON:0002721 {source="NIFSTD"} ! lateral sulcus + +[Term] +id: UBERON:0002671 +name: pallidotegmental fasciculus +synonym: "fasciculus pallido-tegmentalis" RELATED LATIN [NeuroNames:530] +synonym: "fibrae pallidoolivares" RELATED LATIN [NeuroNames:530] +synonym: "pallidotegmental fascicle" RELATED [NeuroNames:530] +synonym: "pallidotegmental tract" EXACT [FMA:72458] +synonym: "PTF" BROAD ABBREVIATION [BIRNLEX:1331, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:ptf +xref: BIRNLEX:1331 +xref: DHBA:12078 +xref: FMA:72458 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=530 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=530 {source="BIRNLEX:1331"} +xref: http://linkedlifedata.com/resource/umls/id/C0175407 +xref: MBA:134 +xref: UMLS:C0175407 {source="BIRNLEX:1331"} +is_a: UBERON:0007702 {source="FMA"} ! tract of brain +relationship: part_of UBERON:0001943 ! midbrain tegmentum + +[Term] +id: UBERON:0002672 +name: anterior subcentral sulcus +synonym: "anterior subcentral sulcus" RELATED [NeuroNames:73] +synonym: "sulcus subcentralis anterior" RELATED LATIN [NeuroNames:73] +xref: BAMS:ascs +xref: BIRNLEX:1332 +xref: DHBA:146034788 +xref: FMA:83765 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=73 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=73 {source="BIRNLEX:1332"} +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus +is_a: UBERON:0014639 ! frontal sulcus +disjoint_from: UBERON:0002909 {source="lexical"} ! posterior subcentral sulcus + +[Term] +id: UBERON:0002673 +name: vestibular nuclear complex +def: "Nuclear complex containing the vestibular nuclei." [UBERON:cjm] +subset: uberon_slim +synonym: "nuclei vestibulares" RELATED LATIN [http://en.wikipedia.org/wiki/Vestibular_nuclei] +synonym: "nuclei vestibulares in medulla oblongata" EXACT LATIN [FMA:72239, FMA:TA] +synonym: "vestibular nuclei" EXACT [FMA:72239] +synonym: "vestibular nuclei in medulla oblongata" EXACT [FMA:72239] +synonym: "vestibular nucleus" RELATED [GO:0021750] +xref: BAMS:Ve +xref: BAMS:VNC +xref: BIRNLEX:1337 +xref: BM:Me-VS +xref: BTO:0004368 +xref: CALOHA:TS-2078 +xref: EV:0100254 +xref: FMA:72239 +xref: GAID:602 +xref: HBA:9697 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=714 {source="BIRNLEX:1337"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=714 +xref: http://linkedlifedata.com/resource/umls/id/C0042600 +xref: MBA:701 +xref: MESH:D014726 +xref: UMLS:C0042600 {source="BIRNLEX:1337"} +xref: Vestibular:nuclei +is_a: UBERON:0007245 ! nuclear complex of neuraxis +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: part_of UBERON:0001896 {source="ABA", source="FMA", source="NIF"} ! medulla oblongata +relationship: part_of UBERON:0004681 {source="Vestibular:nuclei"} ! vestibular system + +[Term] +id: UBERON:0002675 +name: diagonal sulcus +synonym: "sulcus diagonalis" RELATED LATIN [NeuroNames:67] +xref: BAMS:dias +xref: BIRNLEX:1344 +xref: FMA:83758 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=67 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=67 {source="BIRNLEX:1344"} +xref: http://linkedlifedata.com/resource/umls/id/C0694582 +xref: UMLS:C0694582 {source="BIRNLEX:1344"} +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus +is_a: UBERON:0014639 ! frontal sulcus + +[Term] +id: UBERON:0002676 +name: ventral supraoptic decussation +def: "The ventral supraoptic decussation is the crossover point for signals from the left and right eye, en route respectively to the right and left sides of the visual cortex. Occupying the posterior part of the commissure of the optic chiasma is a strand of fibers, the Ventral supraoptic decussation (commissure of Gudden, Gudden's inferior commissure), which is not derived from the optic nerves; it forms a connecting link between the medial geniculate bodies. [WP,unvetted]." [http://en.wikipedia.org/wiki/Ventral_supraoptic_decussation] +subset: uberon_slim +synonym: "commissura supraoptica ventralis" EXACT LATIN [FMA:62052, FMA:TA] +synonym: "commissura supraoptica ventralis" RELATED LATIN [http://en.wikipedia.org/wiki/Ventral_supraoptic_decussation] +synonym: "commissure of Gudden" EXACT [BIRNLEX:1347] +synonym: "Gudden commissure" EXACT [FMA:62052] +synonym: "Gudden's commissure" EXACT [FMA:62052] +synonym: "supraoptic commissures, ventral" EXACT [FMA:62052] +synonym: "supraoptic commissures, ventral (Gudden)" RELATED [NeuroNames:389] +synonym: "ventral supra-optic commissure" EXACT [FMA:62052] +synonym: "ventral supraoptic commissure (of Meynert)" EXACT [BIRNLEX:1347] +synonym: "ventral supraoptic decussation" EXACT [BIRNLEX:1347] +synonym: "ventral supraoptic decussation of Gudden" RELATED [FMA:62052] +synonym: "von Gudden's commissure" EXACT [FMA:62052] +synonym: "VSOX" BROAD ABBREVIATION [BIRNLEX:1347, NIFSTD:NeuroNames_abbrevSource] +synonym: "VSOX" EXACT [BIRNLEX:1347] +xref: BAMS:supv +xref: BAMS:vsox +xref: BIRNLEX:1347 +xref: FMA:62052 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=389 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=389 {source="BIRNLEX:1347"} +xref: http://en.wikipedia.org/wiki/Ventral_supraoptic_decussation +xref: http://linkedlifedata.com/resource/umls/id/C0175339 +xref: MBA:833 +xref: UMLS:C0175339 {source="BIRNLEX:1347"} +is_a: UBERON:0011590 {source="UBERON"} ! commissure of diencephalon +relationship: part_of UBERON:0002550 {source="FMA"} ! anterior hypothalamic region + +[Term] +id: UBERON:0002677 +name: obsolete regional part of medullary raphe nuclear complex +def: "A regional part of brain that is part of a medullary raphe nuclear complex [Automatically generated definition]." [OBOL:automatic] +subset: non_informative +synonym: "medullary raphe nuclear complex segment" EXACT [FMA:83951] +synonym: "segment of medullary raphe nuclear complex" EXACT [BIRNLEX:1349] +is_obsolete: true +consider: BIRNLEX:1349 +consider: FMA:83951 + +[Term] +id: UBERON:0002678 +name: obsolete regional part of medulla oblongata +def: "A regional part of brain that is part of a medulla oblongata [Automatically generated definition]." [OBOL:automatic] +subset: non_informative +synonym: "medullary oblongata segment" EXACT [FMA:71011] +synonym: "segment of medulla oblongata" EXACT [BIRNLEX:1355] +is_obsolete: true +consider: BIRNLEX:1355 +consider: FMA:71011 +consider: SCTID:119241003 + +[Term] +id: UBERON:0002679 +name: anterodorsal nucleus of thalamus +synonym: "AD" BROAD ABBREVIATION [BIRNLEX:1358, NIFSTD:NeuroNames_abbrevSource] +synonym: "anterior dorsal thalamic nucleus" EXACT [EMAPA:35129] +synonym: "anterodorsal nucleus" EXACT [FMA:62141] +synonym: "anterodorsal nucleus of the thalamus" EXACT [BIRNLEX:1358] +synonym: "anterodorsal thalamic nucleus" EXACT [FMA:62141] +synonym: "nucleus anterior dorsalis" EXACT [BIRNLEX:1358] +synonym: "nucleus anterior dorsalis thalami" EXACT [BIRNLEX:1358] +synonym: "nucleus anterior thalami dorsalis" EXACT [BIRNLEX:1358] +synonym: "nucleus anterodorsalis" EXACT [BIRNLEX:1358] +synonym: "nucleus anterodorsalis (hassler)" EXACT [BIRNLEX:1358] +synonym: "nucleus anterodorsalis of thalamus" RELATED LATIN [NeuroNames:303] +synonym: "nucleus anterodorsalis thalami" EXACT LATIN [FMA:TA] +synonym: "nucleus anterodorsalis thalami" EXACT [BIRNLEX:1358] +synonym: "nucleus anterosuperior" EXACT [BIRNLEX:1358] +synonym: "nucleus thalamicus anterodorsalis" EXACT [BIRNLEX:1358] +xref: BAMS:AD +xref: BIRNLEX:1358 +xref: BM:Die-Th-AD +xref: DHBA:10393 +xref: DMBA:16420 +xref: EMAPA:35129 +xref: FMA:62141 +xref: HBA:4398 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=303 {source="BIRNLEX:1358"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=303 +xref: http://linkedlifedata.com/resource/umls/id/C0228318 +xref: http://www.snomedbrowser.com/Codes/Details/279127002 +xref: MBA:64 +xref: UMLS:C0228318 {source="BIRNLEX:1358"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0002788 {source="FMA", source="NIFSTD"} ! anterior nuclear group + +[Term] +id: UBERON:0002680 +name: obsolete regional part of metencephalon +def: "A regional part of brain that is part of a metencephalon [Automatically generated definition]." [OBOL:automatic] +subset: non_informative +synonym: "metencephalon subdivision" EXACT [FMA:67942] +synonym: "segment of metencephalon" EXACT [BIRNLEX:1361] +is_obsolete: true +consider: BIRNLEX:1361 +consider: FMA:67942 + +[Term] +id: UBERON:0002681 +name: anteromedial nucleus of thalamus +synonym: "AM" BROAD ABBREVIATION [BIRNLEX:1365, NIFSTD:NeuroNames_abbrevSource] +synonym: "anteromedial nucleus" EXACT [FMA:62142] +synonym: "anteromedial nucleus of the thalamus" EXACT [BIRNLEX:1365] +synonym: "anteromedial thalamic nucleus" EXACT [FMA:62142] +synonym: "nucleus anterior medialis" EXACT [BIRNLEX:1365] +synonym: "nucleus anterior medialis thalami" EXACT [BIRNLEX:1365] +synonym: "nucleus anterior thalami medialis" EXACT [BIRNLEX:1365] +synonym: "nucleus anteromedialis" BROAD [BIRNLEX:1365] +synonym: "nucleus anteromedialis (hassler)" EXACT [BIRNLEX:1365] +synonym: "nucleus anteromedialis thalami" EXACT [BIRNLEX:1365] +synonym: "nucleus thalamicus anteromedialis" EXACT [BIRNLEX:1365] +xref: BAMS:AM +xref: BIRNLEX:1365 +xref: BM:Die-AM +xref: DHBA:10394 +xref: DMBA:16422 +xref: FMA:62142 +xref: HBA:4396 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=304 {source="BIRNLEX:1365"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=304 +xref: http://linkedlifedata.com/resource/umls/id/C0228319 +xref: http://www.snomedbrowser.com/Codes/Details/279128007 +xref: MBA:127 +xref: UMLS:C0228319 {source="BIRNLEX:1365"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0002788 {source="NIFSTD"} ! anterior nuclear group + +[Term] +id: UBERON:0002682 +name: abducens nucleus +def: "Nucleus located beneath the floor of the 4th ventricle in the pontine tegmentum, containing motor neurons innervating the lateral rectus muscle of the eye (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 533)" [BIRNLEX:1366] +subset: uberon_slim +subset: vertebrate_core +synonym: "abducens motor nuclei" EXACT PLURAL [TAO:0000713] +synonym: "abducens motor nucleus" EXACT [ZFA:0000713] +synonym: "abducens nerve nucleus" EXACT [FMA:54504] +synonym: "abducens nucleus proper" RELATED [NeuroNames:585] +synonym: "abducens VI nucleus" EXACT [MA:0001010] +synonym: "abducent nucleus" EXACT [FMA:54504] +synonym: "motor nucleus VI" EXACT [ZFA:0000713] +synonym: "nucleus abducens" RELATED LATIN [NeuroNames:585] +synonym: "nucleus nervi abducentis" EXACT LATIN [FMA:54504, FMA:TA] +synonym: "nucleus nervi abducentis" RELATED LATIN [http://en.wikipedia.org/wiki/Abducens_nucleus] +synonym: "nucleus of abducens nerve" EXACT [FMA:54504] +synonym: "nucleus of abducens nerve (VI)" EXACT [FMA:54504] +synonym: "nVI" EXACT [ZFA:0000713] +synonym: "sixth cranial nerve nucleus" EXACT [FMA:54504] +xref: Abducens:nucleus +xref: BAMS:6 +xref: BAMS:VI +xref: BIRNLEX:1366 +xref: BM:Pons-VI +xref: DHBA:12418 +xref: DMBA:17279 +xref: EHDAA2:0004310 +xref: EMAPA:35105 +xref: EV:0100266 +xref: FMA:54504 +xref: HBA:9136 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=585 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=585 {source="BIRNLEX:1366"} +xref: http://linkedlifedata.com/resource/umls/id/C0152407 +xref: http://www.snomedbrowser.com/Codes/Details/280165008 +xref: MA:0001010 +xref: MBA:653 +xref: NCIT:C12836 +xref: TAO:0000713 +xref: UMLS:C0152407 {source="BIRNLEX:1366"} +xref: UMLS:C0152407 {source="ncithesaurus:Abducens_Nucleus"} +xref: ZFA:0000713 +is_a: UBERON:0000126 {source="FMA"} ! cranial nerve nucleus +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009662 ! hindbrain nucleus +relationship: part_of UBERON:0000988 {conflicts="ABA", conflicts="ZFA", source="GO", source="MA", source="NIF"} ! pons + +[Term] +id: UBERON:0002683 +name: rhinal sulcus +def: "In the human brain, the rhinencephalon appears as a longitudinal elevation, with a corresponding internal furrow, on the under surface of the hemisphere close to the lamina terminalis; it is separated from the lateral surface of the hemisphere by a furrow, the external rhinal fissure (or rhinal sulcus), and is continuous behind with that part of the hemisphere, which will ultimately form the anterior end of the temporal lobe. [WP,unvetted]." [http://en.wikipedia.org/wiki/Rhinal_sulcus] +subset: uberon_slim +synonym: "fissura rhinalis" EXACT [BIRNLEX:1368] +synonym: "fissura rhinalis" RELATED LATIN [http://en.wikipedia.org/wiki/Rhinal_sulcus] +synonym: "rhinal fissuer (Turner, Rezius)" EXACT [BIRNLEX:1368] +synonym: "rhinal fissure" EXACT [FMA:83746] +synonym: "rhinal fissure (Turner, Rezius)" RELATED [NeuroNames:41] +synonym: "RHS" BROAD ABBREVIATION [BIRNLEX:1368, NIFSTD:NeuroNames_abbrevSource] +synonym: "sulcus rhinalis" EXACT [BIRNLEX:1368] +synonym: "sulcus rhinalis" RELATED LATIN [http://en.wikipedia.org/wiki/Rhinal_sulcus] +xref: BAMS:rf +xref: BAMS:rhs +xref: BIRNLEX:1368 +xref: BM:Tel-Cx-RS +xref: DHBA:10636 +xref: FMA:83746 +xref: HBA:9383 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=41 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=41 {source="BIRNLEX:1368"} +xref: http://linkedlifedata.com/resource/umls/id/C0228254 +xref: http://www.snomedbrowser.com/Codes/Details/279357002 +xref: MBA:1071 +xref: Rhinal:sulcus +xref: UMLS:C0228254 {source="BIRNLEX:1368"} +is_a: UBERON:0013118 ! sulcus of brain +relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex + +[Term] +id: UBERON:0002684 +name: nucleus raphe obscurus +def: "The raphe obscurus projects to the cerebellar lobes VI and VII and to crus II along with the nucleus raphe pontis . This so called obscure nucleus has also been implicated in the modulation of the hypoglossal nerve. It has been observed that the ablation of this nucleus causes a change in the firing pattern in the XII nerve . In addition, the raphe obscurus mediates expiration via the inhibitory effect of serotonin and depresses periodic synaptic potentials . It has also been shown that this nucleus stimulates gastrointestinal motor function; microinjections of 5-HT into the n.r. obscurus increase gastric movement . [WP,unvetted]." [http://en.wikipedia.org/wiki/Nucleus_raphe_obscurus] +subset: uberon_slim +synonym: "nucleus raphC) obscurus" RELATED [BAMS:RO] +synonym: "nucleus raphes obscurus" EXACT LATIN [FMA:72585, FMA:TA] +synonym: "nucleus raphes obscurus" RELATED LATIN [http://en.wikipedia.org/wiki/Nucleus_raphe_obscurus] +synonym: "obscurus raphe nucleus" EXACT [FMA:72585] +synonym: "raphe obscurus nucleus" EXACT [FMA:72585] +xref: BAMS:RO +xref: BAMS:ROb +xref: BIRNLEX:1369 +xref: DHBA:12643 +xref: EMAPA:37730 {source="MA:th"} +xref: FMA:72585 +xref: HBA:9646 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=740 {source="BIRNLEX:1369"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=740 +xref: http://en.wikipedia.org/wiki/Nucleus_raphe_obscurus +xref: http://linkedlifedata.com/resource/umls/id/C0175516 +xref: MA:0002981 +xref: MBA:222 +xref: UMLS:C0175516 {source="BIRNLEX:1369"} +is_a: UBERON:0007635 ! nucleus of medulla oblongata +relationship: part_of UBERON:0002692 {source="FMA"} ! medullary raphe nuclear complex + +[Term] +id: UBERON:0002685 +name: anteroventral nucleus of thalamus +synonym: "anterior ventral nucleus of thalamus" EXACT [FMA:62143] +synonym: "anteroprincipal thalamic nucleus" EXACT [FMA:62143] +synonym: "anteroventral nucleus" EXACT [FMA:62143] +synonym: "anteroventral nucleus of thalamus" EXACT [FMA:62143] +synonym: "anteroventral nucleus of the thalamus" EXACT [BIRNLEX:1372] +synonym: "anteroventral thalamic nucleus" EXACT [FMA:62143] +synonym: "AV" BROAD ABBREVIATION [BIRNLEX:1372, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus anterior principalis (Hassler)" RELATED LATIN [NeuroNames:305] +synonym: "nucleus anterior thalami ventralis" EXACT [BIRNLEX:1372] +synonym: "nucleus anterior ventralis" EXACT [BIRNLEX:1372] +synonym: "nucleus anteroinferior" EXACT [BIRNLEX:1372] +synonym: "nucleus anteroventralis" EXACT [BIRNLEX:1372] +synonym: "nucleus anteroventralis thalami" EXACT [BIRNLEX:1372] +synonym: "nucleus thalamicus anteroprincipalis" EXACT [BIRNLEX:1372] +synonym: "nucleus thalamicus anteroventralis" EXACT [BIRNLEX:1372] +synonym: "ventral anterior nucleus of the thalamus" RELATED [BAMS:VA] +synonym: "ventroanterior nucleus" RELATED [BAMS:VA] +xref: BAMS:ald +xref: BAMS:APr +xref: BAMS:AV +xref: BAMS:VA +xref: BIRNLEX:1372 +xref: BM:Die-AV +xref: DHBA:10395 +xref: DMBA:16421 +xref: EMAPA:35133 +xref: EV:0100199 +xref: FMA:62143 +xref: HBA:4397 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=305 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=305 {source="BIRNLEX:1372"} +xref: http://linkedlifedata.com/resource/umls/id/C0752050 +xref: http://www.snomedbrowser.com/Codes/Details/279130009 +xref: MBA:255 +xref: UMLS:C0752050 {source="BIRNLEX:1372"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0002788 {source="NIFSTD"} ! anterior nuclear group + +[Term] +id: UBERON:0002686 +name: angular gyrus +def: "Part of inferior parietal lobule formed by the cortex surrounding the upturned end of the superior temporal sulcus (Nolte, The Human Brain, 6th ed, 2009, pg 659)" [BIRNLEX:1376] +subset: uberon_slim +synonym: "gyrus angularis" RELATED LATIN [http://en.wikipedia.org/wiki/Angular_gyrus] +synonym: "gyrus parietalis inferior" RELATED LATIN [NeuroNames:109] +synonym: "middle part of inferior parietal lobule" EXACT [FMA:61898] +synonym: "prelunate gyrus" RELATED [NeuroNames:109] +synonym: "preoccipital gyrus" EXACT [FMA:61898] +xref: Angular:gyrus +xref: BAMS:AnG +xref: BIRNLEX:1376 +xref: DHBA:12136 +xref: FMA:61898 +xref: HBA:4111 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=109 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=109 {source="BIRNLEX:1376"} +xref: http://linkedlifedata.com/resource/umls/id/C0152305 +xref: http://www.snomedbrowser.com/Codes/Details/279186009 +xref: NCIT:C32077 +xref: UMLS:C0152305 {source="ncithesaurus:Angular_Gyrus"} +xref: UMLS:C0152305 {source="BIRNLEX:1376"} +is_a: UBERON:0000200 ! gyrus +relationship: part_of UBERON:0001872 ! parietal lobe + +[Term] +id: UBERON:0002687 +name: area X of ventral lateral nucleus +synonym: "anteromedial part of ventral lateral posterior nucleus (jones)" EXACT [] +synonym: "area X" EXACT [FMA:62198] +synonym: "area X of Olszewski" EXACT [BIRNLEX:1379] +synonym: "nucleus lateralis intermedius mediodorsalis situs ventralis medialis" EXACT [BIRNLEX:1379] +synonym: "nucleus ventralis oralis, pars posterior (dewulf)" EXACT [BIRNLEX:1379] +synonym: "nucleus ventro-oralis internus (Hassler)" RELATED LATIN [NeuroNames:342] +synonym: "nucleus ventrooralis internus (hassler)" EXACT [BIRNLEX:1379] +synonym: "nucleus ventrooralis internus, superior part" EXACT [BIRNLEX:1379] +synonym: "X" BROAD ABBREVIATION [BIRNLEX:1379, NIFSTD:NeuroNames_abbrevSource] +xref: BIRNLEX:1379 +xref: DHBA:12653 +xref: FMA:62198 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=342 {source="BIRNLEX:1379"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=342 +xref: http://linkedlifedata.com/resource/umls/id/C0262201 +xref: UMLS:C0262201 {source="BIRNLEX:1379"} +is_a: UBERON:0019269 ! gray matter of diencephalon +relationship: part_of UBERON:0001925 {source="FMA"} ! ventral lateral nucleus of thalamus + +[Term] +id: UBERON:0002688 +name: supramarginal gyrus +def: "Component of the parietal lobe. The first coronal slice between the superior temporal gyrus and the postcentral gyrus where the supramarginal gyrus appears was the rostral boundary whereas the slice where the supramarginal gyrus becomes continuous with the superior parietal gyrus was the caudal boundary. The medial and lateral boundaries were the lateral banks of the intraparietal sulcus and the medial banks of the lateral fissure and/or the superior temporal gyrus respectively (Christine Fennema-Notestine)." [BIRNLEX:1381] +subset: pheno_slim +subset: uberon_slim +synonym: "anterior part of inferior parietal lobule" EXACT [FMA:61897] +synonym: "BA40" RELATED ABBREVIATION [] +synonym: "Brodmann area 40" RELATED [http://en.wikipedia.org/wiki/Supramarginal_gyrus] +synonym: "gyrus supramarginalis" RELATED LATIN [NeuroNames:108] +synonym: "inferior parietal lobule (krieg)" EXACT [] +xref: BAMS:SMG +xref: BIRNLEX:1381 +xref: DHBA:12135 +xref: FMA:61897 +xref: HBA:4104 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=108 {source="BIRNLEX:1381"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=108 +xref: http://linkedlifedata.com/resource/umls/id/C0228214 +xref: http://www.snomedbrowser.com/Codes/Details/279185008 +xref: NCIT:C33706 +xref: UMLS:C0228214 {source="ncithesaurus:Supramarginal_Gyrus"} +xref: UMLS:C0228214 {source="BIRNLEX:1381"} +is_a: UBERON:0000200 ! gyrus +relationship: contributes_to_morphology_of UBERON:0001872 ! parietal lobe +relationship: part_of UBERON:0001872 ! parietal lobe + +[Term] +id: UBERON:0002689 +name: supraoptic crest +def: "one of the circumventricular organs of the brain. The OVLT is outside the blood brain barrier, and so neurons in this region can respond to factors that are present in the systemic circulation." [http://en.wikipedia.org/wiki/Organum_vasculosum_of_the_lamina_terminalis, https://sourceforge.net/tracker/?func=detail&aid=3474225&group_id=76834&atid=1205376] +synonym: "olfactory ventricle (olfactory part of lateral ventricle)" RELATED [BAMS:OV] +synonym: "organum vasculosum" RELATED [NeuroNames:383] +synonym: "organum vasculosum lamina terminalis" EXACT LATIN [NLXANAT:100313] +synonym: "organum vasculosum laminae terminalis" EXACT LATIN [FMA:62315, FMA:TA] +synonym: "organum vasculosum of lamina terminalis" RELATED LATIN [NeuroNames:383] +synonym: "OVLT" EXACT ABBREVIATION [BIRNLEX:1400] +synonym: "prechiasmatic gland" EXACT [BIRNLEX:1400] +synonym: "SoC" BROAD ABBREVIATION [BIRNLEX:1400, NIFSTD:NeuroNames_abbrevSource] +synonym: "vascular organ of lamina terminalis" EXACT [FMA:62315] +synonym: "vascular organ of the lamina terminalis" RELATED [NeuroNames:383] +xref: BAMS:OV +xref: BAMS:SoC +xref: BAMS:VOLT +xref: BIRNLEX:1400 +xref: DHBA:12106 +xref: DMBA:15582 +xref: EMAPA:37742 {source="MA:th"} +xref: FMA:62315 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=383 {source="BIRNLEX:1400"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=383 +xref: http://en.wikipedia.org/wiki/Organum_vasculosum_of_the_lamina_terminalis +xref: http://linkedlifedata.com/resource/umls/id/C0175316 +xref: MA:0003018 +xref: MBA:763 +xref: NLXANAT:100313 +xref: UMLS:C0175316 {source="BIRNLEX:1400"} +is_a: UBERON:0010135 {source="MA"} ! sensory circumventricular organ +relationship: part_of UBERON:0002550 {source="FMA"} ! anterior hypothalamic region +relationship: superficial_to UBERON:0000201 {source="Wikipedia"} ! endothelial blood brain barrier + +[Term] +id: UBERON:0002690 +name: anteroventral periventricular nucleus +synonym: "anterior ventral periventricular nucleus of hypothalamus" RELATED [BAMS:AVPe] +synonym: "anteroventral periventricular nucleus of the hypothalamus" RELATED [BAMS:AVPV] +synonym: "AVPe" BROAD ABBREVIATION [BIRNLEX:1401, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus periventricularis anteroventralis" RELATED LATIN [NeuroNames:382] +synonym: "ventral periventricular hypothalamic nucleus" RELATED [NeuroNames:382] +xref: BAMS:AVPe +xref: BAMS:AVPV +xref: BIRNLEX:1401 +xref: DHBA:13061 +xref: FMA:62314 +xref: HBA:4550 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=382 {source="BIRNLEX:1401"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=382 +xref: http://linkedlifedata.com/resource/umls/id/C0262200 +xref: MBA:272 +xref: UMLS:C0262200 {source="BIRNLEX:1401"} +is_a: UBERON:0006568 ! hypothalamic nucleus +relationship: part_of UBERON:0002550 {source="FMA"} ! anterior hypothalamic region + +[Term] +id: UBERON:0002691 +name: ventral tegmental area +def: "Unpaired midbrain region situated in the ventromedial portion of the reticular formation. The VTA is medial to the substantia nigra and ventral to the red nucleus, and extends caudally from the posterior hypothalamus in the diencephalon. The VTA contains dopamine neurons that project to various limbic and cortical areas and is a critical component of the brain's reward circuitry." [BIRNLEX:1415] +subset: efo_slim +subset: uberon_slim +synonym: "a10a" EXACT LATIN [FMA:72438, FMA:TA] +synonym: "area tegmentalis ventralis" RELATED LATIN [NeuroNames:521] +synonym: "area tegmentalis ventralis (Tsai)" RELATED LATIN [NeuroNames:521] +synonym: "tegmentum ventrale" RELATED [XAO:0004226] +synonym: "ventral brain stem" RELATED [XAO:0004226] +synonym: "ventral tegmental area (Tsai)" RELATED [NeuroNames:521] +synonym: "ventral tegmental area of tsai" EXACT [FMA:72438] +synonym: "ventral tegmental nucleus (Rioch)" RELATED [NeuroNames:521] +synonym: "ventral tegmental nucleus (tsai)" EXACT [FMA:72438] +synonym: "ventral tegmental nucleus of tsai" EXACT [FMA:72438] +synonym: "ventromedial mesencephalic tegmentum" RELATED [BIRNLEX:1415] +synonym: "VTA" BROAD ABBREVIATION [BIRNLEX:1415, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:VTA +xref: BIRNLEX:1415 +xref: BM:MB-VTA +xref: CALOHA:TS-2389 +xref: DHBA:12261 +xref: EFO:0001935 +xref: EMAPA:35913 +xref: FMA:72438 +xref: GAID:587 +xref: HBA:9066 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=521 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=521 {source="BIRNLEX:1415"} +xref: http://en.wikipedia.org/wiki/Ventral_tegmental_area +xref: http://linkedlifedata.com/resource/umls/id/C0175405 +xref: MBA:749 +xref: MESH:A08.186.211.132.659.822.820 +xref: UMLS:C0175405 {source="BIRNLEX:1415"} +xref: XAO:0004226 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0001943 ! midbrain tegmentum + +[Term] +id: UBERON:0002692 +name: medullary raphe nuclear complex +synonym: "nuclei raphe (myelencephali)" RELATED LATIN [NeuroNames:738] +synonym: "raphe medullae oblongatae" EXACT LATIN [FMA:68874, FMA:TA] +synonym: "raphe nuclei of medulla" EXACT [FMA:68874] +synonym: "raphe nuclei of the medulla" RELATED [NeuroNames:738] +synonym: "raphe of medulla oblongata" EXACT [FMA:68874] +xref: BAMS:RaM +xref: BIRNLEX:1420 +xref: FMA:68874 +xref: HBA:9642 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=738 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=738 {source="BIRNLEX:1420"} +xref: http://linkedlifedata.com/resource/umls/id/C0175514 +xref: http://www.snomedbrowser.com/Codes/Details/362420006 +xref: UMLS:C0175514 {source="BIRNLEX:1420"} +is_a: UBERON:0007245 ! nuclear complex of neuraxis +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata +relationship: part_of UBERON:0004684 {source="Wikipedia"} ! raphe nuclei + +[Term] +id: UBERON:0002693 +name: occipitotemporal sulcus +synonym: "inferior temporal fissure" EXACT [FMA:74518] +synonym: "inferior temporal fissure (Crosby)" EXACT [BIRNLEX:1422] +synonym: "inferior temporal sulcus (roberts)" EXACT [] +synonym: "inferior temporal sulcus (szikla)" EXACT [] +synonym: "inferior temporal sulcus-2" EXACT [FMA:74518] +synonym: "lateral occipito -temporal sulcus" RELATED [BAMS:lots] +synonym: "lateral occipitotemporal sulcus" EXACT [BIRNLEX:1422] +synonym: "occipito-temporal sulcus" EXACT [FMA:74518] +synonym: "OTS" BROAD ABBREVIATION [BIRNLEX:1422, NIFSTD:NeuroNames_abbrevSource] +synonym: "sulcus occipitotemporalis" RELATED LATIN [NeuroNames:55] +synonym: "sulcus temporalis inferior (Roberts)" RELATED LATIN [NeuroNames:55] +synonym: "third temporal sulcus" EXACT [FMA:74518] +xref: BAMS:lots +xref: BAMS:ots +xref: BIRNLEX:1422 +xref: BM:Tel-Cx-OTS +xref: DHBA:10623 +xref: FMA:74518 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=55 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=55 {source="BIRNLEX:1422"} +xref: http://linkedlifedata.com/resource/umls/id/C0228245 +xref: http://www.snomedbrowser.com/Codes/Details/369220009 +xref: UMLS:C0228245 {source="BIRNLEX:1422"} +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus + +[Term] +id: UBERON:0002694 +name: anterior hypothalamic commissure +synonym: "AHC" BROAD ABBREVIATION [BIRNLEX:1424, NIFSTD:NeuroNames_abbrevSource] +synonym: "anterior hypothalamic commissure (Ganser)" EXACT [FMA:62053] +synonym: "anterior hypothalamic decussation of Ganser" EXACT [FMA:62053] +synonym: "commissura hypothalamica anterior" RELATED LATIN [NeuroNames:390] +synonym: "commissura supraoptica dorsalis pars dorsalis" RELATED LATIN [NeuroNames:390] +synonym: "commissura supraoptica superior pars dorsalis" RELATED LATIN [NeuroNames:390] +xref: BAMS:ahc +xref: BIRNLEX:1424 +xref: FMA:62053 +xref: HBA:4600 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=390 {source="BIRNLEX:1424"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=390 +xref: http://linkedlifedata.com/resource/umls/id/C0175337 +xref: UMLS:C0175337 {source="BIRNLEX:1424"} +is_a: UBERON:0011590 {source="FMA"} ! commissure of diencephalon + +[Term] +id: UBERON:0002695 +name: parieto-occipital sulcus +def: "Only a small part of the Parietooccipital Fissure (or parieto-occipital sulcus) is seen on the lateral surface of the hemisphere, its chief part being on the medial surface. The lateral part of the parietooccipital fissure (Fig. 726) is situated about 5 cm. in front of the occipital pole of the hemisphere, and measures about 1.25 cm. in length. The medial part of the parietooccipital fissure (Fig. 727) runs downward and forward as a deep cleft on the medial surface of the hemisphere, and joins the calcarine fissure below and behind the posterior end of the corpus callosum. In most cases it contains a submerged gyrus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Parieto-occipital_sulcus] +subset: uberon_slim +synonym: "fissura parieto-occipitalis" EXACT [BIRNLEX:1428] +synonym: "fissura parietooccipitalis" RELATED LATIN [http://en.wikipedia.org/wiki/Parieto-occipital_sulcus] +synonym: "parieto-occipital fissure" EXACT [FMA:83754] +synonym: "parieto-occipital incisure" EXACT [FMA:83754] +synonym: "parietooccipital sulcus" EXACT [FMA:83754] +synonym: "POS" BROAD ABBREVIATION [BIRNLEX:1428, NIFSTD:NeuroNames_abbrevSource] +synonym: "posterior orbital sulcus" RELATED [BAMS:pos] +synonym: "sulcus parieto-occipitalis" EXACT [BIRNLEX:1428] +synonym: "sulcus parieto-occipitalis medialis" EXACT [BIRNLEX:1428] +synonym: "sulcus parietoccipitalis" EXACT [BIRNLEX:1428] +synonym: "sulcus parietooccipitalis" EXACT [BIRNLEX:1428] +synonym: "sulcus parietooccipitalis" RELATED LATIN [http://en.wikipedia.org/wiki/Parieto-occipital_sulcus] +xref: BAMS:pocs +xref: BAMS:pos +xref: BIRNLEX:1428 +xref: BM:Tel-Cx-POS +xref: DHBA:10626 +xref: FMA:83754 +xref: HBA:9392 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=52 {source="BIRNLEX:1428"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=52 +xref: http://linkedlifedata.com/resource/umls/id/C0228191 +xref: http://linkedlifedata.com/resource/umls/id/C1744592 +xref: http://www.snomedbrowser.com/Codes/Details/279354009 +xref: NCIT:C33275 +xref: ncithesaurus:Parieto-occipital_Sulcus +xref: OpenCyc:Mx4rv7l_DJwpEbGdrcN5Y29ycA +xref: Parieto-occipital:sulcus +xref: UMLS:C0228191 {source="BIRNLEX:1428"} +xref: UMLS:C1744592 {source="ncithesaurus:Parieto-occipital_Fissure"} +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus + +[Term] +id: UBERON:0002696 +name: cuneiform nucleus +synonym: "area parabigeminalis (Mai)" RELATED LATIN [NeuroNames:502] +synonym: "CnF" BROAD ABBREVIATION [BIRNLEX:1430, NIFSTD:NeuroNames_abbrevSource] +synonym: "cuneiform nucleus (Castaldi)" RELATED [NeuroNames:502] +synonym: "cunieform nucleus" EXACT DUBIOUS [FMA:231327] +synonym: "nucleus cuneiformis" RELATED LATIN [NeuroNames:502] +synonym: "parabigeminal area (mai)" EXACT [] +xref: BAMS:CnF +xref: BAMS:CUN +xref: BIRNLEX:1430 +xref: BM:MB-CNF +xref: DHBA:12240 +xref: DMBA:16777 +xref: FMA:231327 +xref: FMA:72427 +xref: HBA:9020 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=502 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=502 {source="BIRNLEX:1430"} +xref: http://linkedlifedata.com/resource/umls/id/C0175396 +xref: MBA:616 +xref: UMLS:C0175396 {source="BIRNLEX:1430"} +is_a: UBERON:0007415 ! nucleus of midbrain reticular formation + +[Term] +id: UBERON:0002697 +name: dorsal supraoptic decussation +synonym: "commissura supraoptica dorsalis" EXACT LATIN [FMA:62051, FMA:TA] +synonym: "commissura supraoptica dorsalis pars ventralis (Meynert)" RELATED LATIN [NeuroNames:388] +synonym: "commissure of Meynert" EXACT [] +synonym: "dorsal supra-optic commissure" EXACT [FMA:62051] +synonym: "dorsal supraoptic commissure" EXACT [FMA:62051] +synonym: "dorsal supraoptic commissure (of ganser)" EXACT [] +synonym: "dorsal supraoptic decussation (of ganser)" EXACT [BIRNLEX:1433] +synonym: "dorsal supraoptic decussation (of Meynert)" EXACT [BIRNLEX:1433] +synonym: "dorsal supraoptic decussation of Meynert" EXACT [] +synonym: "DSOX" BROAD ABBREVIATION [BIRNLEX:1433, NIFSTD:NeuroNames_abbrevSource] +synonym: "ganser's commissure" EXACT [FMA:62051] +synonym: "Meynert's commissure" EXACT [FMA:62051] +synonym: "supraoptic commissure of Meynert" EXACT [] +synonym: "supraoptic commissures, dorsal" EXACT [FMA:62051] +synonym: "supraoptic commissures, dorsal (Meynert)" RELATED [NeuroNames:388] +xref: BAMS:dsox +xref: BAMS:supd +xref: BIRNLEX:1433 +xref: FMA:62051 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=388 {source="BIRNLEX:1433"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=388 +xref: http://linkedlifedata.com/resource/umls/id/C0175338 +xref: MBA:825 +xref: UMLS:C0175338 {source="BIRNLEX:1433"} +is_a: UBERON:0011590 ! commissure of diencephalon +relationship: part_of UBERON:0002550 {source="NIFSTD"} ! anterior hypothalamic region + +[Term] +id: UBERON:0002698 +name: preoccipital notch +def: "Small indentation on the inferior surface of the cerebral cortex at the border of the occiptal and parietal lobes. It is considered as a landmark because the occipital lobe is located just behind the line that connects that notch with the parietoccipital sulcus (adapted from Wikipedia)." [BIRNLEX:1436] +synonym: "incisura parieto-occipitalis" EXACT [BIRNLEX:1436] +synonym: "incisura praeoccipitalis" EXACT [BIRNLEX:1436] +synonym: "incisura preoccipitalis" EXACT [BIRNLEX:1436] +synonym: "occipital notch" EXACT [FMA:83739] +synonym: "PON" BROAD ABBREVIATION [BIRNLEX:1436, NIFSTD:NeuroNames_abbrevSource] +synonym: "preoccipital incisura" EXACT [FMA:83739] +synonym: "preoccipital incisure" EXACT [FMA:83739] +xref: BAMS:pon +xref: BIRNLEX:1436 +xref: DHBA:10645 +xref: FMA:83739 +xref: HBA:9387 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=54 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=54 {source="BIRNLEX:1436"} +xref: http://linkedlifedata.com/resource/umls/id/C0228192 +xref: http://www.snomedbrowser.com/Codes/Details/369229005 +xref: Preoccipital:notch +xref: UMLS:C0228192 {source="BIRNLEX:1436"} +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0002021 ! occipital lobe + +[Term] +id: UBERON:0002699 +name: supraopticohypophysial tract +synonym: "SOH" BROAD ABBREVIATION [BIRNLEX:1440, NIFSTD:NeuroNames_abbrevSource] +synonym: "supra-opticohypophysial tract" EXACT [FMA:62054] +synonym: "supraopticohypophyseal tract" EXACT [FMA:62054] +synonym: "tractus hypothalamico-hypophyseus" RELATED LATIN [NeuroNames:391] +synonym: "tractus hypothalamohypophysialis" RELATED LATIN [NeuroNames:391] +synonym: "tractus supraoptico-hypophyseus" RELATED LATIN [NeuroNames:391] +synonym: "tractus supraopticohypophysialis" EXACT LATIN [FMA:62054, FMA:TA] +xref: BAMS:soh +xref: BIRNLEX:1440 +xref: FMA:62054 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=391 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=391 {source="BIRNLEX:1440"} +xref: http://linkedlifedata.com/resource/umls/id/C0228368 +xref: UMLS:C0228368 {source="BIRNLEX:1440"} +is_a: UBERON:0011591 {source="FMA"} ! tract of diencephalon +relationship: part_of UBERON:0002550 {source="FMA", source="NIFSTD"} ! anterior hypothalamic region + +[Term] +id: UBERON:0002700 +name: subcuneiform nucleus +synonym: "nucleus subcuneiformis" RELATED LATIN [NeuroNames:503] +synonym: "SubCn" BROAD ABBREVIATION [BIRNLEX:1441, NIFSTD:NeuroNames_abbrevSource] +synonym: "subcuneiform area of midbrain" EXACT [FMA:72428] +xref: BAMS:SubCn +xref: BIRNLEX:1441 +xref: DHBA:12246 +xref: DMBA:16787 +xref: FMA:72428 +xref: HBA:9022 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=503 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=503 {source="BIRNLEX:1441"} +xref: http://linkedlifedata.com/resource/umls/id/C0175397 +xref: UMLS:C0175397 {source="BIRNLEX:1441"} +is_a: UBERON:0007415 ! nucleus of midbrain reticular formation + +[Term] +id: UBERON:0002701 +name: anterior median oculomotor nucleus +synonym: "AM3" BROAD ABBREVIATION [BIRNLEX:1445, NIFSTD:Paxinos-Franklin-mouse-2001_abbrevSource] +synonym: "anterior medial visceral nucleus" EXACT [FMA:54524] +synonym: "anterior median nucleus of oculomotor nerve" EXACT [FMA:72423] +synonym: "anterior median nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "nucleus anteromedialis" BROAD [FMA:54524] +synonym: "nucleus anteromedialis" RELATED [FMA:54524] +synonym: "nucleus nervi oculomotorii medianus anterior" RELATED LATIN [NeuroNames:497] +synonym: "nucleus visceralis anteromedialis" EXACT LATIN [FMA:54524, FMA:TA] +synonym: "ventral medial nucleus of oculomotor nerve" EXACT [FMA:54524] +synonym: "ventral medial visceral nucleus" EXACT [FMA:54524] +xref: BAMS:AM3 +xref: BIRNLEX:1445 +xref: DHBA:12199 +xref: FMA:54524 +xref: FMA:72423 +xref: HBA:9032 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=497 {source="BIRNLEX:1445"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=497 +xref: http://linkedlifedata.com/resource/umls/id/C0175382 +xref: UMLS:C0175382 {source="BIRNLEX:1445"} +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus +relationship: part_of UBERON:0001715 {source="NIFSTD"} ! oculomotor nuclear complex + +[Term] +id: UBERON:0002702 +name: middle frontal gyrus +def: "Component of the frontal lobe, lateral aspect (Christine Fennema-Notestine)." [BIRNLEX:1451] +subset: uberon_slim +synonym: "gyrus F2" RELATED LATIN [NeuroNames:84] +synonym: "gyrus frontalis medialis" EXACT LATIN [FMA:61859, FMA:TA] +synonym: "gyrus frontalis medialis (Winters)" RELATED LATIN [NeuroNames:84] +synonym: "gyrus frontalis medius" RELATED LATIN [http://en.wikipedia.org/wiki/Middle_frontal_gyrus] +synonym: "gyrus frontalis secundus" RELATED LATIN [NeuroNames:84] +synonym: "intermediate frontal gyrus" EXACT [FMA:61859] +synonym: "medial frontal gyrus" EXACT [FMA:61859] +synonym: "medial frontal gyrus (Mai)" RELATED [NeuroNames:84] +synonym: "middle (medial) frontal gyrus" RELATED [BAMS:MFG] +xref: BAMS:MFG +xref: BIRNLEX:1451 +xref: BTO:0004834 +xref: DHBA:12116 +xref: FMA:61859 +xref: HBA:4028 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=84 {source="BIRNLEX:1451"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=84 +xref: http://en.wikipedia.org/wiki/Middle_frontal_gyrus +xref: http://linkedlifedata.com/resource/umls/id/C0152297 +xref: http://www.snomedbrowser.com/Codes/Details/362332009 +xref: NCIT:C33118 +xref: ncithesaurus:Middle_Frontal_Gyrus +xref: UMLS:C0152297 {source="BIRNLEX:1451"} +is_a: UBERON:0015593 ! frontal gyrus + +[Term] +id: UBERON:0002703 +name: precentral gyrus +def: "Component of the frontal lobe. The appearance and disappearance of the central sulcus is the rostral and caudal boundaries of the precentral gyrus respectively. The medial boundary is specific frontal gyri (superior, middle and inferior) whereas the lateral boundary is the medial bank of the central sulcus (Christine Fennema-Notestine)." [BIRNLEX:1455] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "anterior central gyrus" RELATED [NeuroNames:89] +synonym: "gyrus centralis anterior" RELATED LATIN [NeuroNames:89] +synonym: "gyrus praecentralis" RELATED LATIN [NeuroNames:89] +synonym: "motor cortex (Noback)" RELATED [NeuroNames:89] +synonym: "precentral convolution" EXACT [FMA:61894] +synonym: "prerolandic gyrus" EXACT [FMA:61894] +xref: BAMS:PrG +xref: BIRNLEX:1455 +xref: DHBA:12114 +xref: EFO:0001373 +xref: FMA:61894 +xref: HBA:4010 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=89 {source="BIRNLEX:1455"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=89 +xref: http://linkedlifedata.com/resource/umls/id/C0152299 +xref: NCIT:C33393 +xref: Precentral:gyrus +xref: UMLS:C0152299 {source="BIRNLEX:1455"} +xref: UMLS:C0152299 {source="ncithesaurus:Precentral_Gyrus"} +is_a: UBERON:0015593 ! frontal gyrus + +[Term] +id: UBERON:0002704 +name: metathalamus +def: "The metathalamus is a composite structure of the thalamus, consisting of the medial geniculate nucleus and the lateral geniculate nucleus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Metathalamus] +subset: uberon_slim +synonym: "corpora geniculata" RELATED LATIN [http://en.wikipedia.org/wiki/Metathalamus] +synonym: "geniculate group of dorsal thalamus" RELATED [BAMS:GENd] +synonym: "geniculate group of the dorsal thalamus" EXACT [FMA:62023] +synonym: "geniculate thalamic group" EXACT [MA:0000868] +synonym: "geniculate thalamic nuclear group (metathalamus)" RELATED [BAMS:GENd] +synonym: "MTh" BROAD ABBREVIATION [BIRNLEX:1461, NIFSTD:NeuroNames_abbrevSource] +synonym: "nuclei metathalami" EXACT [BIRNLEX:1461] +xref: BAMS:GENd +xref: BAMS:Metathalamus +xref: BAMS:MetThal +xref: BAMS:MTh +xref: BIRNLEX:1461 +xref: EMAPA:35376 +xref: EV:0100217 +xref: FMA:62023 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=351 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=351 {source="BIRNLEX:1461"} +xref: http://en.wikipedia.org/wiki/Metathalamus +xref: http://www.snomedbrowser.com/Codes/Details/361550004 +xref: MA:0000868 +xref: MBA:1008 +is_a: UBERON:0015233 ! nucleus of dorsal thalamus + +[Term] +id: UBERON:0002705 +name: midline nuclear group +def: "The midline nuclear group (or midline thalamic nuclei) a region of the thalamus consisting of the following nuclei: paraventricular nucleus of thalamus (nucleus paraventricularis thalami) - not to be confused with paraventricular nucleus of hypothalamus paratenial nucleus (nucleus parataenialis) reuniens nucleus (nucleus reuniens) rhomboidal nucleus (nucleus commissuralis rhomboidalis) subfascicular nucleus (nucleus subfascicularis) [WP,unvetted]." [http://en.wikipedia.org/wiki/Midline_nuclear_group] +subset: uberon_slim +synonym: "median nuclei of thalamus" EXACT [FMA:62020] +synonym: "midline group of the dorsal thalamus" RELATED [BAMS:MTN] +synonym: "midline nuclear group" EXACT [FMA:62020] +synonym: "midline nuclear group of thalamus" EXACT [FMA:62020] +synonym: "midline nuclei of thalamus" EXACT [FMA:62020] +synonym: "midline thalamic group" EXACT [MA:0000864] +synonym: "midline thalamic nuclear group" RELATED [BAMS:MTN] +synonym: "midline thalamic nuclear group" RELATED [BAMS:MNG] +synonym: "midline thalamic nuclei" RELATED [NeuroNames:306] +synonym: "nuclei mediani (thalami)" EXACT [BIRNLEX:1462] +synonym: "nuclei mediani thalami" EXACT LATIN [FMA:62020, FMA:TA] +synonym: "nuclei mediani thalami" RELATED LATIN [http://en.wikipedia.org/wiki/Midline_nuclear_group] +synonym: "nucleus mediani thalami" RELATED [BTO:0002454] +synonym: "periventricular nuclei of thalamus" EXACT [FMA:62020] +xref: BAMS:MidTh +xref: BAMS:MNG +xref: BAMS:MTN +xref: BIRNLEX:1462 +xref: BTO:0002454 +xref: EMAPA:35573 +xref: FMA:62020 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=306 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=306 {source="BIRNLEX:1462"} +xref: http://en.wikipedia.org/wiki/Midline_nuclear_group +xref: http://www.snomedbrowser.com/Codes/Details/279163002 +xref: MA:0000864 +xref: MBA:571 +is_a: UBERON:0015233 ! nucleus of dorsal thalamus + +[Term] +id: UBERON:0002706 +name: posterior nucleus of hypothalamus +def: "The posterior nucleus of the hypothalamus is one of the many nuclei that make up the hypothalamic region of the brain. Its function is thermoregulation (heating) of the body. Damage or destruction of this nucleus causes hypothermia." [http://en.wikipedia.org/wiki/Posterior_nucleus_of_hypothalamus] +synonym: "area hypothalamica posterior" EXACT LATIN [FMA:62350, FMA:TA] +synonym: "area posterior hypothalami" RELATED LATIN [NeuroNames:420] +synonym: "nucleus hypothalamicus posterior" RELATED LATIN [NeuroNames:420] +synonym: "nucleus posterior hypothalami" RELATED [BTO:0002461] +synonym: "PH" BROAD ABBREVIATION [BIRNLEX:1463, NIFSTD:NeuroNames_abbrevSource] +synonym: "posterior hypothalamic area" EXACT [FMA:62350] +synonym: "posterior hypothalamic nucleus" EXACT [FMA:62350] +synonym: "posterior nucleus" RELATED [NeuroNames:420] +synonym: "posterior nucleus of the hypothalamus" RELATED [NeuroNames:420] +xref: BAMS:HPA +xref: BAMS:PH +xref: BIRNLEX:1463 +xref: BM:Die-Hy-HPA +xref: BTO:0002461 +xref: DHBA:10503 +xref: EV:0100235 +xref: FMA:62350 +xref: HBA:12910 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=420 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=420 {source="BIRNLEX:1463"} +xref: http://en.wikipedia.org/wiki/Posterior_nucleus_of_hypothalamus +xref: http://linkedlifedata.com/resource/umls/id/C0228385 +xref: http://www.snomedbrowser.com/Codes/Details/362385002 +xref: MBA:946 +xref: UMLS:C0228385 {source="BIRNLEX:1463"} +is_a: UBERON:0006568 ! hypothalamic nucleus +relationship: part_of UBERON:0002770 {source="NIFSTD"} ! posterior hypothalamic region + +[Term] +id: UBERON:0002707 +name: corticospinal tract +alt_id: UBERON:0004095 +def: "The corticospinal fibers that arise from the pyramidal cells within the cerebral cortex layer V of the precentral motor area, the premotor area and the postcentral gyrus, then descend into and through the medulla to form the lateral corticospinal tract and the anterior corticospinal tract." [ISBN:0-683-40008-8, MP:0002878] +subset: pheno_slim +subset: uberon_slim +synonym: "corticospinal fibers" EXACT [NeuroNames:1320] +synonym: "fasciculus cerebro-spinalis" EXACT LATIN [NeuroNames:1320] +synonym: "fasciculus pyramidalis" EXACT LATIN [NeuroNames:800] +synonym: "fibrae corticospinales" EXACT LATIN [NeuroNames:1320] +synonym: "pyramid (Willis)" EXACT [NeuroNames:800] +synonym: "pyramidal tract" BROAD INCONSISTENT [BIRNLEX:1464, http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1320, MP:0002878] +synonym: "tractus cortico-spinalis" EXACT LATIN [NeuroNames:1320] +synonym: "tractus corticospinalis" EXACT LATIN [NeuroNames:1320] +synonym: "tractus corticospinalis" EXACT LATIN [http://en.wikipedia.org/wiki/Corticospinal_tract] +synonym: "tractus pyramidalis" EXACT LATIN [NeuroNames:800] +xref: BAMS:P +xref: BIRNLEX:1464 +xref: BM:CST +xref: BM:Me-PyT +xref: Corticospinal:tract +xref: DHBA:12776 +xref: DMBA:17756 +xref: EMAPA:36600 +xref: FMA:72634 +xref: GAID:702 +xref: HBA:265505574 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1320 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=800 {source="BIRNLEX:1464"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=800 +xref: http://linkedlifedata.com/resource/umls/id/C0034229 +xref: http://www.snomedbrowser.com/Codes/Details/362325000 +xref: MBA:190 +xref: MBA:784 +xref: MESH:D011712 +xref: UMLS:C0034229 {source="BIRNLEX:1464"} +is_a: UBERON:0001018 {notes="In NIFSTD this is a tract of brain but this leads to issues due to its overlap with the spinal cord"} ! axon tract +relationship: part_of UBERON:0025525 ! motor system +relationship: part_of UBERON:0036224 ! corticobulbar and corticospinal tracts + +[Term] +id: UBERON:0002708 +name: posterior periventricular nucleus +synonym: "griseum periventriculare hypothalami" EXACT LATIN [NeuroNames:419] +synonym: "nucleus periventricularis posterior" EXACT [BTO:0002479] +synonym: "periventricular hypothalamic nucleus, posterior part" EXACT [NeuroNames:419] +synonym: "periventricular nucleus, posterior subdivision" EXACT [FMA:62349] +synonym: "posterior paraventricular nucleus" EXACT [BAMS:PVp] +synonym: "posterior periventricular hypothalamic nucleus" EXACT [BIRNLEX:1466] +synonym: "posterior periventricular nucleus" EXACT [FMA:62349] +synonym: "posterior periventricular nucleus of hypothalamus" EXACT [FMA:62349] +synonym: "posterior periventricular nucleus of the hypothalamus" EXACT [BAMS:PVp] +synonym: "PPe" BROAD ABBREVIATION [BIRNLEX:1466, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:PPe +xref: BAMS:PVp +xref: BIRNLEX:1466 +xref: BTO:0002479 +xref: DMBA:16441 +xref: FMA:62349 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=419 {source="BIRNLEX:1466"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=419 +xref: http://linkedlifedata.com/resource/umls/id/C0262317 +xref: MBA:126 +xref: UMLS:C0262317 {source="BIRNLEX:1466"} +is_a: UBERON:0006568 ! hypothalamic nucleus +relationship: part_of UBERON:0002770 {source="NIFSTD"} ! posterior hypothalamic region + +[Term] +id: UBERON:0002709 +name: posterior nuclear complex of thalamus +def: "Part of thalamus comprising ill defined cellular groups in the caudal thalamus at the meso-diencephalic junction. It is not a homogeneous structure but consists of several distinct cellular groups, including the suprageniculate and limitans nuclei, the magnocellular division of the medial geniculate body, portions of the pulvinar nucleus and an area of mixed cell types intercalated between the ventroposterior nucleus and the nucleus lateral posterior (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 97)" [BIRNLEX:1467] +subset: vertebrate_core +synonym: "caudal thalamic nucleus" EXACT [TAO:0000325] +synonym: "nuclei posteriores thalami" EXACT [BIRNLEX:1467] +synonym: "parieto-occipital" RELATED [BAMS:PO] +synonym: "PNC" BROAD ABBREVIATION [BIRNLEX:1467, NIFSTD:NeuroNames_abbrevSource] +synonym: "posterior complex of thalamus" EXACT [FMA:62024] +synonym: "posterior complex of the thalamus" EXACT [BAMS:PO] +synonym: "posterior nuclear complex" EXACT [FMA:62024] +synonym: "posterior nuclear complex of thalamus" EXACT [FMA:62024] +synonym: "posterior nuclear group of thalamus" EXACT [FMA:62024] +synonym: "posterior nucleus of dorsal thalamus" EXACT [BAMS:Po] +synonym: "posterior thalamic nuclear group" EXACT [FMA:62024] +synonym: "posterior thalamic nucleus" EXACT [BTO:0002462] +xref: BAMS:PNC +xref: BAMS:PO +xref: BAMS:Po +xref: BIRNLEX:1467 +xref: BTO:0002462 +xref: DHBA:10428 +xref: EMAPA:35697 +xref: EMAPA:35698 +xref: FMA:62024 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=360 {source="BIRNLEX:1467"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=360 +xref: http://linkedlifedata.com/resource/umls/id/C0175298 +xref: http://www.snomedbrowser.com/Codes/Details/424395006 +xref: MBA:1020 +xref: UMLS:C0175298 {source="BIRNLEX:1467"} +is_a: UBERON:0007245 ! nuclear complex of neuraxis +is_a: UBERON:0019269 ! gray matter of diencephalon +disjoint_from: UBERON:0002788 {source="lexical"} ! anterior nuclear group +relationship: part_of UBERON:0004703 {source="FMA"} ! dorsal thalamus + +[Term] +id: UBERON:0002710 +name: cingulate sulcus +def: "The cingulate sulcus is a sulcus (brain fold) on the medial wall of the cerebral cortex. The frontal and parietal lobes are separated by the cingulate sulcus from the cingulate gyrus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Cingulate_sulcus] +subset: uberon_slim +synonym: "calloso-marginal sulcus" EXACT [FMA:83748] +synonym: "callosomarginal fissure" EXACT [FMA:83748] +synonym: "callosomarginal sulcus" EXACT [FMA:83748] +synonym: "CGS" BROAD ABBREVIATION [BIRNLEX:1468, NIFSTD:NeuroNames_abbrevSource] +synonym: "cingulate fissure" EXACT [FMA:83748] +synonym: "sulcus callosomarginalis" EXACT [BIRNLEX:1468] +synonym: "sulcus cingulatus" EXACT [BIRNLEX:1468] +synonym: "sulcus cinguli" EXACT [BIRNLEX:1468] +synonym: "sulcus cinguli" RELATED LATIN [http://en.wikipedia.org/wiki/Cingulate_sulcus] +xref: BAMS:cgs +xref: BAMS:cms +xref: BIRNLEX:1468 +xref: BM:Tel-Cx-CGS +xref: Cingulate:sulcus +xref: DHBA:10615 +xref: FMA:83748 +xref: HBA:9364 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=43 {source="BIRNLEX:1468"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=43 +xref: http://linkedlifedata.com/resource/umls/id/C0228189 +xref: http://www.snomedbrowser.com/Codes/Details/279350000 +xref: UMLS:C0228189 {source="BIRNLEX:1468"} +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus +relationship: adjacent_to UBERON:0002967 ! cingulate gyrus + +[Term] +id: UBERON:0002711 +name: nucleus of posterior commissure +synonym: "Darkshevich nucleus" NARROW [] +synonym: "Darkshevich's nucleus" NARROW [] +synonym: "nucleus commissura posterior" RELATED LATIN [NeuroNames:511] +synonym: "nucleus commissuralis posterioris" RELATED LATIN [NeuroNames:511] +synonym: "nucleus interstitialis of posterior commissure" RELATED LATIN [NeuroNames:511] +synonym: "nucleus of Darkschewitsch" NARROW [] +synonym: "nucleus of the posterior commissure" RELATED [NeuroNames:511] +synonym: "PCom" BROAD ABBREVIATION [BIRNLEX:1470, NIFSTD:NeuroNames_abbrevSource] +synonym: "posterior commissure nucleus" EXACT [FMA:68463] +xref: BAMS:NPC +xref: BAMS:PCN +xref: BAMS:PCom +xref: BIRNLEX:1470 +xref: BM:NPC +xref: FMA:68463 +xref: HBA:9027 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=511 {source="BIRNLEX:1470"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=511 +xref: http://linkedlifedata.com/resource/umls/id/C0175386 +xref: MBA:634 +xref: UMLS:C0175386 {source="BIRNLEX:1470"} +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus +disjoint_from: UBERON:0002933 {source="lexical"} ! nucleus of anterior commissure +relationship: part_of UBERON:0001943 ! midbrain tegmentum + +[Term] +id: UBERON:0002712 +name: premammillary nucleus +synonym: "nuclei premamillaris" RELATED LATIN [NeuroNames:418] +synonym: "nucleus premamillaris hypothalami" RELATED LATIN [NeuroNames:418] +synonym: "PMm" BROAD ABBREVIATION [BIRNLEX:1473, NIFSTD:NeuroNames_abbrevSource] +synonym: "premamillary nucleus" RELATED [NeuroNames:418] +synonym: "premammillary nuclei" EXACT [FMA:62348] +xref: BAMS:PM +xref: BAMS:PMm +xref: BIRNLEX:1473 +xref: FMA:62348 +xref: HBA:4676 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=418 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=418 {source="BIRNLEX:1473"} +xref: http://linkedlifedata.com/resource/umls/id/C0262317 +xref: UMLS:C0262317 {source="BIRNLEX:1473"} +is_a: UBERON:0006568 {source="FMA"} ! hypothalamic nucleus +relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic region + +[Term] +id: UBERON:0002713 +name: circular sulcus of insula +def: "A marginal sulcus that is part of a insula [Automatically generated definition]." [OBOL:automatic] +synonym: "central lobe marginal branch of cingulate sulcus" EXACT [OBOL:automatic] +synonym: "central lobe marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] +synonym: "central lobe marginal sulcus" EXACT [OBOL:automatic] +synonym: "circular fissure" EXACT [FMA:83753] +synonym: "circular insular sulcus" RELATED [NeuroNames:51] +synonym: "circular sulcus" RELATED [NeuroNames:51] +synonym: "circular sulcus (of reil)" EXACT [] +synonym: "circular sulcus of the insula" RELATED [NeuroNames:51] +synonym: "circuminsular fissure" RELATED [NeuroNames:51] +synonym: "circuminsular sulcus" EXACT [FMA:83753] +synonym: "ciruclar insular sulcus" EXACT [BIRNLEX:1475] +synonym: "cortex of island marginal branch of cingulate sulcus" EXACT [OBOL:automatic] +synonym: "cortex of island marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] +synonym: "cortex of island marginal sulcus" EXACT [OBOL:automatic] +synonym: "CRS" BROAD ABBREVIATION [BIRNLEX:1475, NIFSTD:NeuroNames_abbrevSource] +synonym: "cruciform sulcus" RELATED [BAMS:crs] +synonym: "insula lobule marginal branch of cingulate sulcus" EXACT [OBOL:automatic] +synonym: "insula lobule marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] +synonym: "insula lobule marginal sulcus" EXACT [OBOL:automatic] +synonym: "insula marginal branch of cingulate sulcus" EXACT [OBOL:automatic] +synonym: "insula marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] +synonym: "insula marginal sulcus" EXACT [OBOL:automatic] +synonym: "insular cortex marginal branch of cingulate sulcus" EXACT [OBOL:automatic] +synonym: "insular cortex marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] +synonym: "insular cortex marginal sulcus" EXACT [OBOL:automatic] +synonym: "insular lobe marginal branch of cingulate sulcus" EXACT [OBOL:automatic] +synonym: "insular lobe marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] +synonym: "insular lobe marginal sulcus" EXACT [OBOL:automatic] +synonym: "insular region marginal branch of cingulate sulcus" EXACT [OBOL:automatic] +synonym: "insular region marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] +synonym: "insular region marginal sulcus" EXACT [OBOL:automatic] +synonym: "island of reil marginal branch of cingulate sulcus" EXACT [OBOL:automatic] +synonym: "island of reil marginal ramus of cingulate sulcus" EXACT [OBOL:automatic] +synonym: "island of reil marginal sulcus" EXACT [OBOL:automatic] +synonym: "limiting fissure" EXACT [FMA:83753] +synonym: "limiting sulcus" RELATED [NeuroNames:51] +synonym: "marginal branch of cingulate sulcus of central lobe" EXACT [OBOL:automatic] +synonym: "marginal branch of cingulate sulcus of cortex of island" EXACT [OBOL:automatic] +synonym: "marginal branch of cingulate sulcus of insula" EXACT [OBOL:automatic] +synonym: "marginal branch of cingulate sulcus of insula lobule" EXACT [OBOL:automatic] +synonym: "marginal branch of cingulate sulcus of insular cortex" EXACT [OBOL:automatic] +synonym: "marginal branch of cingulate sulcus of insular lobe" EXACT [OBOL:automatic] +synonym: "marginal branch of cingulate sulcus of insular region" EXACT [OBOL:automatic] +synonym: "marginal branch of cingulate sulcus of island of reil" EXACT [OBOL:automatic] +synonym: "marginal insular sulcus" EXACT [BIRNLEX:1475] +synonym: "marginal ramus of cingulate sulcus of central lobe" EXACT [OBOL:automatic] +synonym: "marginal ramus of cingulate sulcus of cortex of island" EXACT [OBOL:automatic] +synonym: "marginal ramus of cingulate sulcus of insula" EXACT [OBOL:automatic] +synonym: "marginal ramus of cingulate sulcus of insula lobule" EXACT [OBOL:automatic] +synonym: "marginal ramus of cingulate sulcus of insular cortex" EXACT [OBOL:automatic] +synonym: "marginal ramus of cingulate sulcus of insular lobe" EXACT [OBOL:automatic] +synonym: "marginal ramus of cingulate sulcus of insular region" EXACT [OBOL:automatic] +synonym: "marginal ramus of cingulate sulcus of island of reil" EXACT [OBOL:automatic] +synonym: "marginal sulcus of central lobe" EXACT [OBOL:automatic] +synonym: "marginal sulcus of cortex of island" EXACT [OBOL:automatic] +synonym: "marginal sulcus of insula" EXACT [FMA:83753] +synonym: "marginal sulcus of insula lobule" EXACT [OBOL:automatic] +synonym: "marginal sulcus of insular cortex" EXACT [OBOL:automatic] +synonym: "marginal sulcus of insular lobe" EXACT [OBOL:automatic] +synonym: "marginal sulcus of insular region" EXACT [OBOL:automatic] +synonym: "marginal sulcus of island of reil" EXACT [OBOL:automatic] +synonym: "peri-insular sulcus" RELATED [NeuroNames:51] +synonym: "periinsular sulci" RELATED [NeuroNames:51] +synonym: "sulcus circularis insulae" EXACT [BIRNLEX:1475] +synonym: "sulcus marginalis insulae" EXACT [BIRNLEX:1475] +xref: BAMS:crs +xref: BAMS:mis +xref: BIRNLEX:1475 +xref: FMA:83753 +xref: HBA:9398 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=51 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=51 {source="BIRNLEX:1475"} +xref: http://en.wikipedia.org/wiki/Circular_sulcus_of_insula +xref: http://linkedlifedata.com/resource/umls/id/C0228258 +xref: NCIT:C32321 +xref: UMLS:C0228258 {source="BIRNLEX:1475"} +is_a: UBERON:0002912 ! marginal sulcus +intersection_of: UBERON:0002912 ! marginal sulcus +intersection_of: part_of UBERON:0002022 ! insula +relationship: part_of UBERON:0002022 ! insula + +[Term] +id: UBERON:0002714 +name: rubrospinal tract +def: "White matter tract arising in red nucleus and projecting to spinal cord ventral horn" [BIRNLEX:1476] +subset: uberon_slim +synonym: "Monakow's tract" EXACT [FMA:72640] +synonym: "rubrospinal tract (Monakow)" EXACT [BIRNLEX:1476] +synonym: "tractus rubrospinalis" RELATED LATIN [http://en.wikipedia.org/wiki/Rubrospinal_tract] +xref: BAMS:rs +xref: BAMS:rust +xref: BIRNLEX:1476 +xref: DHBA:12782 +xref: DMBA:17792 +xref: FMA:72640 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=806 {source="BIRNLEX:1476"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=806 +xref: http://linkedlifedata.com/resource/umls/id/C0152377 +xref: http://www.snomedbrowser.com/Codes/Details/369264001 +xref: MBA:863 +xref: Rubrospinal:tract +xref: UMLS:C0152377 {source="BIRNLEX:1476"} +is_a: UBERON:0007702 ! tract of brain +relationship: part_of UBERON:0014649 {source="FMA NIF combined"} ! white matter of medulla oblongata + +[Term] +id: UBERON:0002715 +name: spinal trigeminal tract of medulla +def: "Part of spinal trigeminal tract located in the medulla" [BIRNLEX:1477] +synonym: "spinal trigeminal tract of the medulla" RELATED [NeuroNames:791] +synonym: "tractus spinalis nervi trigemini (myelencephali)" RELATED LATIN [NeuroNames:791] +xref: BAMS:sp5m +xref: BIRNLEX:1477 +xref: FMA:72625 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=791 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=791 {source="BIRNLEX:1477"} +xref: http://linkedlifedata.com/resource/umls/id/C0262330 +xref: UMLS:C0262330 {source="BIRNLEX:1477"} +is_a: UBERON:0014761 ! spinal trigeminal tract +relationship: part_of UBERON:0001896 ! medulla oblongata + +[Term] +id: UBERON:0002716 +name: collateral sulcus +def: "The collateral fissure (or sulcus) is on the tentorial surface of the hemisphere and extends from near the occipital pole to within a short distance of the temporal pole. Behind, it lies below and lateral to the calcarine fissure, from which it is separated by the lingual gyrus; in front, it is situated between the hippocampal gyrus and the anterior part of the fusiform gyrus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Collateral_fissure] +subset: uberon_slim +synonym: "collateral fissure" EXACT [FMA:83751] +synonym: "COS" BROAD ABBREVIATION [BIRNLEX:1480, NIFSTD:NeuroNames_abbrevSource] +synonym: "fissura collateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Collateral_fissure] +synonym: "sulcus collateralis" EXACT [BIRNLEX:1480] +synonym: "sulcus collateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Collateral_fissure] +xref: BAMS:cos +xref: BIRNLEX:1480 +xref: Collateral:fissure +xref: DHBA:10618 +xref: FMA:83751 +xref: HBA:9380 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=47 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=47 {source="BIRNLEX:1480"} +xref: http://linkedlifedata.com/resource/umls/id/C0228226 +xref: http://www.snomedbrowser.com/Codes/Details/279356006 +xref: NCIT:C32340 +xref: ncithesaurus:Collateral_Sulcus +xref: UMLS:C0228226 {source="BIRNLEX:1480"} +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus + +[Term] +id: UBERON:0002717 +name: rostral interstitial nucleus of medial longitudinal fasciculus +def: "The rostral interstitial nucleus of medial longitudinal fasciculus (riMLF) is a portion of the medial longitudinal fasciculus which controls vertical gaze. They project to the vestibular nuclei. [WP,unvetted]." [http://en.wikipedia.org/wiki/Rostral_interstitial_nucleus_of_medial_longitudinal_fasciculus] +subset: uberon_slim +synonym: "nucleus interstitialis" RELATED LATIN [http://en.wikipedia.org/wiki/Rostral_interstitial_nucleus_of_medial_longitudinal_fasciculus] +synonym: "nucleus interstitialis rostralis" RELATED LATIN [NeuroNames:516] +synonym: "RI" BROAD ABBREVIATION [BIRNLEX:1481, NIFSTD:NeuroNames_abbrevSource] +synonym: "riMLF" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "rostral interstitial nucleus of MLF" EXACT [FMA:72433] +synonym: "rostral interstitial nucleus of the medial longitudinal fasciculus" RELATED [NeuroNames:516] +xref: BAMS:RI +xref: BIRNLEX:1481 +xref: FMA:72433 +xref: HBA:9060 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=516 {source="BIRNLEX:1481"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=516 +xref: http://en.wikipedia.org/wiki/Rostral_interstitial_nucleus_of_medial_longitudinal_fasciculus +xref: http://linkedlifedata.com/resource/umls/id/C0175403 +xref: MBA:1078 +xref: UMLS:C0175403 {source="BIRNLEX:1481"} +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0007414 ! nucleus of midbrain tegmentum +is_a: UBERON:0009661 ! midbrain nucleus +relationship: part_of UBERON:0001943 {source="FMA", source="NIF"} ! midbrain tegmentum + +[Term] +id: UBERON:0002718 +name: solitary tract +def: "The solitary tract is a compact fiber bundle that extends longitudinally through the posterolateral region of the medulla. The solitary tract is surrounded by the nucleus of the solitary tract, and descends to the upper cervical segments of the spinal cord. [WP,unvetted]." [http://en.wikipedia.org/wiki/Solitary_tract] +subset: uberon_slim +synonym: "fasciculus solitarius" RELATED LATIN [NeuroNames:785] +synonym: "respiratory bundle of Gierke" EXACT [] +synonym: "solitary tract (Stilling)" RELATED [NeuroNames:785] +synonym: "tractus solitarius" RELATED LATIN [NeuroNames:785] +synonym: "tractus solitarius medullae oblongatae" RELATED LATIN [http://en.wikipedia.org/wiki/Solitary_tract] +xref: BAMS:sol +xref: BAMS:ts +xref: BIRNLEX:1483 +xref: BM:Me-ST +xref: DHBA:12783 +xref: DMBA:17796 +xref: FMA:72619 +xref: HBA:265505626 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=785 {source="BIRNLEX:1483"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=785 +xref: http://linkedlifedata.com/resource/umls/id/C0175559 +xref: MBA:237 +xref: Solitary:tract +xref: UMLS:C0175559 {source="BIRNLEX:1483"} +is_a: UBERON:0007702 ! tract of brain +relationship: part_of UBERON:0014649 ! white matter of medulla oblongata + +[Term] +id: UBERON:0002719 +name: spino-olivary tract +def: "The spino-olivary tract is located in the ventral funiculus of the spinal cord. This tract carries proprioception information from muscles and tendons as well as cutaneous impulses to the olivary nucleus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Spino-olivary_tract] +subset: uberon_slim +synonym: "helweg's tract" EXACT [FMA:72643] +synonym: "spino-olivary pathways" RELATED [NeuroNames:809] +synonym: "spino-olivary tracts" RELATED [NeuroNames:809] +synonym: "tractus spino-olivaris" RELATED LATIN [NeuroNames:809] +synonym: "tractus spinoolivaris" RELATED LATIN [http://en.wikipedia.org/wiki/Spino-olivary_tract] +xref: BAMS:spo +xref: BIRNLEX:1484 +xref: DHBA:12793 +xref: FMA:72643 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=809 {source="BIRNLEX:1484"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=809 +xref: http://linkedlifedata.com/resource/umls/id/C0175562 +xref: http://www.snomedbrowser.com/Codes/Details/362607001 +xref: MBA:261 +xref: Spino-olivary:tract +xref: UMLS:C0175562 {source="BIRNLEX:1484"} +is_a: UBERON:0007702 ! tract of brain +relationship: part_of UBERON:0014649 ! white matter of medulla oblongata + +[Term] +id: UBERON:0002720 +name: mammillary peduncle +def: "White matter bundle in the posterior hypothalamus containing ascending afferent fibers to the mammillary bodies from the ventral and dorsal tegmental nuclei (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 671)." [BIRNLEX:1486] +synonym: "mammillary peduncle (Meynert)" RELATED [NeuroNames:425] +synonym: "MPE" BROAD ABBREVIATION [BIRNLEX:1486, NIFSTD:NeuroNames_abbrevSource] +synonym: "peduncle of mammillary body" EXACT [FMA:62061] +synonym: "pedunculus corporis mamillaris" RELATED LATIN [NeuroNames:425] +synonym: "pedunculus corporis mammillaris" RELATED LATIN [NeuroNames:425] +xref: BAMS:mp +xref: BAMS:mpe +xref: BIRNLEX:1486 +xref: DHBA:266441609 +xref: DMBA:17780 +xref: FMA:62061 +xref: HBA:265505166 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=425 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=425 {source="BIRNLEX:1486"} +xref: http://linkedlifedata.com/resource/umls/id/C0152358 +xref: http://linkedlifedata.com/resource/umls/id/C1289573 +xref: http://www.snomedbrowser.com/Codes/Details/369146004 +xref: MBA:673 +xref: UMLS:C0152358 {source="BIRNLEX:1486"} +xref: UMLS:C1289573 {source="BIRNLEX:1486"} +is_a: UBERON:0022235 ! peduncle of diencephalon +relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic region + +[Term] +id: UBERON:0002721 +name: lateral sulcus +def: "A sulcus that divides the frontal lobe and parietal lobe above from the temporal lobe below. It is in both hemispheres of the brain but is longer in the left hemisphere. The lateral sulcus is one of the earliest-developing sulci of the human brain. It first appears around the fourteenth gestational week[WP,modified]." [http://en.wikipedia.org/wiki/Lateral_sulcus] +subset: uberon_slim +synonym: "fissura lateralis" EXACT [BIRNLEX:1487] +synonym: "fissura lateralis cerebri" EXACT [BIRNLEX:1487] +synonym: "fissura lateralis cerebri (sylvii)" EXACT [BIRNLEX:1487] +synonym: "fissura transversa cerebri" EXACT LATIN [FMA:77801, FMA:TA] +synonym: "fissure of Sylvius" EXACT [] +synonym: "lateral cerebral fissure" EXACT [FMA:77801] +synonym: "lateral cerebral sulcus" EXACT [FMA:77801] +synonym: "lateral fissure" EXACT [FMA:77801] +synonym: "lateral fissure of Sylvius" EXACT [] +synonym: "LS" BROAD ABBREVIATION [BIRNLEX:1487, NIFSTD:NeuroNames_abbrevSource] +synonym: "sulcus cerebri lateralis (Sylvii)" RELATED LATIN [NeuroNames:49] +synonym: "sulcus lateralis" EXACT [BIRNLEX:1487] +synonym: "sulcus lateralis cerebri" EXACT LATIN [FMA:77801, FMA:TA] +synonym: "sulcus lateralis cerebri" EXACT LATIN [http://en.wikipedia.org/wiki/Lateral_sulcus] +synonym: "Sylvian fissure" EXACT [BIRNLEX:1487] +synonym: "Sylvian sulcus" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "transverse cerebral fissure" EXACT [FMA:77801] +xref: BAMS:lf +xref: BAMS:ls +xref: BIRNLEX:1487 +xref: BM:Tel-Cx-LS +xref: DHBA:10621 +xref: DHBA:12110 +xref: FMA:77801 +xref: HBA:9402 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=49 {source="BIRNLEX:1487"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=49 +xref: http://linkedlifedata.com/resource/umls/id/C0228187 +xref: http://www.snomedbrowser.com/Codes/Details/369226003 +xref: Lateral:sulcus +xref: NCIT:C32615 +xref: UMLS:C0228187 {source="BIRNLEX:1487"} +xref: UMLS:C0228187 {source="ncithesaurus:Fissure_of_Sylvius"} +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus +relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex + +[Term] +id: UBERON:0002722 +name: trochlear nucleus +def: "Nucleus in the midbrain at the level of the inferior colliculus near the midline, containing the motor neurons giving rise to the trochlear nerve, innervating the contralateral superior oblique extraocular muscle of the eye (Brodal, Neurological Anatomy, 3rd ed, 1981, pg. 533)." [BIRNLEX:1488] +subset: uberon_slim +subset: vertebrate_core +synonym: "fourth cranial nerve nucleus" EXACT [FMA:54518] +synonym: "motor nucleus IV" EXACT [ZFA:0000450] +synonym: "nIV" EXACT [ZFA:0000450] +synonym: "nucleus nervi trochlearis" EXACT LATIN [FMA:54518, FMA:TA] +synonym: "nucleus nervi trochlearis" RELATED LATIN [http://en.wikipedia.org/wiki/Trochlear_nucleus] +synonym: "nucleus of trochlear nerve" EXACT [FMA:54518] +synonym: "trochlear IV nucleus" EXACT [MA:0001075] +synonym: "trochlear motor nucleus" EXACT [ZFA:0000450] +xref: BAMS:4 +xref: BAMS:4N +xref: BAMS:IV +xref: BIRNLEX:1488 +xref: BM:MB-IV +xref: DHBA:12206 +xref: DMBA:16903 +xref: EMAPA:35886 +xref: EV:0100251 +xref: FMA:54518 +xref: HBA:9063 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=513 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=513 {source="BIRNLEX:1488"} +xref: http://linkedlifedata.com/resource/umls/id/C0152406 +xref: http://www.snomedbrowser.com/Codes/Details/280163001 +xref: MA:0001075 +xref: MBA:115 +xref: TAO:0000450 +xref: Trochlear:nucleus +xref: UMLS:C0152406 {source="BIRNLEX:1488"} +xref: ZFA:0000450 +is_a: UBERON:0000126 ! cranial nerve nucleus +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus +relationship: extends_fibers_into UBERON:0001644 ! trochlear nerve +relationship: part_of UBERON:0001943 ! midbrain tegmentum + +[Term] +id: UBERON:0002723 +name: mammillary princeps fasciculus +synonym: "fasciculus mamillaris" RELATED LATIN [NeuroNames:422] +synonym: "fasciculus mamillaris princeps" RELATED LATIN [NeuroNames:422] +synonym: "fasciculus mammillaris princeps" RELATED LATIN [NeuroNames:422] +synonym: "MPR" BROAD ABBREVIATION [BIRNLEX:1492, NIFSTD:NeuroNames_abbrevSource] +synonym: "principal mammillary fasciculus" EXACT [FMA:62057] +synonym: "principal mammillary tract" EXACT [BIRNLEX:1492] +synonym: "principal mammillary tract (Kvlliker)" RELATED [NeuroNames:422] +synonym: "principle mamillary fasciculus" EXACT [FMA:62057] +xref: BAMS:mpr +xref: BAMS:pm +xref: BIRNLEX:1492 +xref: FMA:62057 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=422 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=422 {source="BIRNLEX:1492"} +xref: http://linkedlifedata.com/resource/umls/id/C0175331 +xref: MBA:753 +xref: UMLS:C0175331 {source="BIRNLEX:1492"} +is_a: UBERON:0011591 {source="FMA"} ! tract of diencephalon +relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic region + +[Term] +id: UBERON:0002724 +name: limen of insula +def: "The anterior basal part of the insular cortex, which separates the lateral surface of the insula from the anterior perforated substance (Heimer, The Human Brain and Spinal Cord, 2nd ed., 1995, pg 80)." [BIRNLEX:1493, https://github.com/obophenotype/uberon/issues/1279] +synonym: "ambient gyrus" RELATED [NeuroNames:2072] +synonym: "angulus gyri olfactorii lateralis" EXACT [FMA:75266] +synonym: "gyrus ambiens" RELATED [NeuroNames:2072] +synonym: "gyrus ambiens (Noback)" EXACT [BIRNLEX:1493] +synonym: "insula limen" EXACT [FMA:75266] +synonym: "limen insula" RELATED [NeuroNames:50] +synonym: "limen insulae" EXACT [BIRNLEX:1493] +synonym: "limen of the insula" RELATED [NeuroNames:50] +synonym: "LMI" BROAD ABBREVIATION [BIRNLEX:1493, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:lmi +xref: BIRNLEX:1493 +xref: DHBA:12179 +xref: FMA:75266 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=50 {source="BIRNLEX:1493"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=50 +xref: http://linkedlifedata.com/resource/umls/id/C0228263 +xref: http://www.snomedbrowser.com/Codes/Details/369215009 +xref: UMLS:C0228263 {source="BIRNLEX:1493"} +is_a: UBERON:0000200 ! gyrus +relationship: part_of UBERON:0002022 ! insula + +[Term] +id: UBERON:0002726 +name: cervical spinal cord +def: "A spinal cord segment that adjacent_to a cervical region." [OBOL:automatic] +synonym: "cervical segment of spinal cord" EXACT [FMA:71166] +synonym: "cervical segments of spinal cord [1-8]" EXACT [FMA:71166] +synonym: "cervical spinal cord" EXACT [FMA:71166] +synonym: "pars cervicalis medullae spinalis" EXACT LATIN [FMA:71166, FMA:TA] +synonym: "segmenta cervicalia medullae spinalis [1-8" EXACT LATIN [FMA:71166, FMA:TA] +xref: BIRNLEX:1499 +xref: FMA:71166 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1654 +xref: http://linkedlifedata.com/resource/umls/id/C0581619 +xref: http://linkedlifedata.com/resource/umls/id/C1278837 +xref: http://www.snomedbrowser.com/Codes/Details/180960003 +xref: MA:0003081 +xref: NCIT:C12892 +xref: UMLS:C0581619 {source="BIRNLEX:1499"} +xref: UMLS:C0581619 {source="ncithesaurus:Cervical_Spinal_Cord"} +xref: UMLS:C1278837 {source="BIRNLEX:1499"} +is_a: UBERON:0005844 ! spinal cord segment +intersection_of: UBERON:0005844 ! spinal cord segment +intersection_of: adjacent_to UBERON:0005434 ! cervical region +relationship: adjacent_to UBERON:0005434 ! cervical region + +[Term] +id: UBERON:0002727 +name: medial medullary lamina of globus pallidus +def: "Thin sheet of white matter dividing the external and internal segments of the globus pallidus in primates" [BIRNLEX:1501] +synonym: "globus pallidus, lamina medullaris interna" RELATED LATIN [NeuroNames:235] +synonym: "inner medullary lamina" EXACT [FMA:62470] +synonym: "internal medullary l. of corpus striatum" RELATED [BTO:0002251] +synonym: "internal medullary lamina of corpus striatum" EXACT [FMA:62470] +synonym: "internal medullary lamina of globus pallidus" EXACT [FMA:62470] +synonym: "internal medullary lamina of lentiform nucleus" EXACT [FMA:62470] +synonym: "l. medullaris interna corporis striati" RELATED [BTO:0002251] +synonym: "lamella pallidi interna" RELATED LATIN [NeuroNames:235] +synonym: "lamina medullaris interna corporis striati" EXACT LATIN [FMA:62470, FMA:TA] +synonym: "lamina medullaris interna pallidi" RELATED LATIN [NeuroNames:235] +synonym: "lamina medullaris medialis" RELATED LATIN [NeuroNames:235] +synonym: "lamina medullaris medialis corporis striati" EXACT LATIN [FMA:62470, FMA:TA] +synonym: "lamina pallidi interna" RELATED LATIN [NeuroNames:235] +synonym: "medial medullary lamina" EXACT [FMA:62470] +synonym: "medial medullary lamina of corpus striatum" EXACT [FMA:62470] +synonym: "medial medullary lamina of globus pallidus" EXACT [FMA:62470] +synonym: "medial medullary lamina of pallidum" EXACT [FMA:62470] +synonym: "medial medullary lamina of the globus pallidus" RELATED [BAMS:mml] +synonym: "medial medullary stria" EXACT [FMA:62470] +synonym: "medial medullary stria of corpus striatum" RELATED [BTO:0002251] +xref: BAMS:mml +xref: BIRNLEX:1501 +xref: BTO:0002251 +xref: DHBA:12062 +xref: FMA:62470 +xref: HBA:265505122 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=235 {source="BIRNLEX:1501"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=235 +xref: http://linkedlifedata.com/resource/umls/id/C0152340 +xref: http://www.snomedbrowser.com/Codes/Details/369205003 +xref: UMLS:C0152340 {source="BIRNLEX:1501"} +is_a: UBERON:0014532 {source="FMA"} ! white matter lamina of cerebral hemisphere +disjoint_from: UBERON:0002765 {source="lexical"} ! lateral medullary lamina of globus pallidus +relationship: part_of UBERON:0001875 {source="FMA", source="NIFSTD"} ! globus pallidus + +[Term] +id: UBERON:0002728 +name: entorhinal cortex +def: "Component of the temporal lobe on the mesial surface. The rostral and caudal boundaries of the entorhinal cortex are the rostral end of the collateral sulcus and the caudal end of the amygdala respectively. The medial boundary is the medial aspect of the temporal lobe and the lateral boundary is the collateral sulcus. (DK)." [BIRNLEX:1508, http://en.wikipedia.org/wiki/Entorhinal_cortex] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "area entorhinalis (28,34)" RELATED LATIN [NeuroNames:168] +synonym: "area entorhinalis ventralis et dorsalis" RELATED LATIN [NeuroNames:168] +synonym: "Brodmann's area 28" RELATED [BTO:0002650] +synonym: "cortex entorhinalis" RELATED LATIN [NeuroNames:168] +synonym: "entorhinal area" EXACT [ABA:ENT, BTO:0002650, FMA:72356] +synonym: "entorhinal cortex" RELATED INCONSISTENT [BIRNLEX:1508] +xref: BAMS:ENT +xref: BAMS:Ent +xref: BIRNLEX:1508 +xref: BM:Tel-Cx-ENT +xref: BTO:0002650 +xref: DHBA:10317 +xref: DMBA:16102 +xref: EFO:0001920 +xref: EMAPA:35313 +xref: Entorhinal:cortex +xref: FMA:72356 +xref: GAID:636 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=168 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=168 {source="BIRNLEX:1508"} +xref: http://linkedlifedata.com/resource/umls/id/C0175196 +xref: http://www.snomedbrowser.com/Codes/Details/369099007 +xref: MA:0003117 +xref: MBA:909 +xref: MESH:A08.186.211.577.710.225 +xref: NCIT:C97338 +xref: PBA:294022158 +xref: UMLS:C0175196 {source="BIRNLEX:1508"} +xref: UMLS:C0175196 {source="ncithesaurus:Entorhinal_Cortex"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002973 {source="FMA"} ! parahippocampal gyrus +relationship: part_of UBERON:0004725 {source="BTO"} ! piriform cortex + +[Term] +id: UBERON:0002729 +name: claustral amygdaloid area +synonym: "area claustralis amygdalae" RELATED LATIN [NeuroNames:251] +synonym: "claustral amygdalar area" RELATED [NeuroNames:251] +synonym: "claustrum diffusa" EXACT [FMA:61869] +synonym: "claustrum parvum" EXACT [FMA:61869] +synonym: "ventral claustrum" EXACT [FMA:61869] +synonym: "ventral portion of claustrum" EXACT [FMA:61869] +xref: BAMS:ClA +xref: BAMS:VCl +xref: BIRNLEX:1515 +xref: DHBA:10348 +xref: FMA:61869 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=251 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=251 {source="BIRNLEX:1515"} +xref: http://linkedlifedata.com/resource/umls/id/C0262214 +xref: UMLS:C0262214 {source="BIRNLEX:1515"} +is_a: UBERON:0005401 ! cerebral hemisphere gray matter +relationship: part_of UBERON:0001876 {source="FMA"} ! amygdala +relationship: part_of UBERON:0006098 {source="NIF"} ! basal nuclear complex + +[Term] +id: UBERON:0002730 +name: obsolete regional part of thalamus +def: "A regional part of brain that is part of a thalamus [Automatically generated definition]." [OBOL:automatic] +subset: non_informative +synonym: "segment of thalamus" EXACT [BIRNLEX:1517] +synonym: "thalamus segment" EXACT [FMA:67705] +is_obsolete: true +consider: BIRNLEX:1517 +consider: FMA:67705 +consider: SCTID:119406000 + +[Term] +id: UBERON:0002731 +name: vestibulocochlear nerve root +def: "Either of the two roots that come of the vestibulocochlear nerve" [http://orcid.org/0000-0002-6601-2165] +synonym: "central part of vestibulocochlear nerve" EXACT [FMA:72499] +synonym: "fibrae nervi statoacustici" EXACT LATIN [FMA:72499, FMA:TA] +synonym: "root of vestibulocochlear nerve" EXACT [DHBA:12868] +synonym: "statoacoustic nerve fibers" EXACT [FMA:72499] +synonym: "vestibulocochlear nerve fibers" EXACT [FMA:72499] +synonym: "vestibulocochlear nerve roots" EXACT [FMA:72499] +synonym: "vestibulocochlear nerve tract" EXACT [FMA:72499] +xref: BAMS:8nf +xref: BIRNLEX:1519 +xref: BIRNLEX:1636 +xref: DHBA:12868 +xref: DMBA:17746 +xref: FMA:72499 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=605 +is_a: UBERON:0006843 ! root of cranial nerve +intersection_of: UBERON:0002211 ! nerve root +intersection_of: extends_fibers_into UBERON:0001648 ! vestibulocochlear nerve +relationship: extends_fibers_into UBERON:0001648 ! vestibulocochlear nerve +relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum + +[Term] +id: UBERON:0002732 +name: longitudinal pontine fibers +synonym: "corticofugal fibers" RELATED [NeuroNames:618] +synonym: "fasiculii longitudinales pyramidales" RELATED LATIN [NeuroNames:618] +synonym: "fibrae pontis longitudinales" EXACT LATIN [FMA:72513, FMA:TA] +synonym: "longitudinal fasciculus of the pons" EXACT [FMA:72513] +synonym: "longitudinal pontine fibers" EXACT [FMA:72513] +synonym: "longitudinal pontine fibres" EXACT [FMA:72513] +synonym: "longitudinal pontine tract" EXACT [FMA:72513] +xref: BAMS:lfp +xref: BAMS:lp +xref: BIRNLEX:1523 +xref: DHBA:12762 +xref: FMA:72513 +xref: HBA:265505502 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=618 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=618 {source="BIRNLEX:1523"} +xref: http://linkedlifedata.com/resource/umls/id/C0228450 +xref: http://www.snomedbrowser.com/Codes/Details/361544009 +xref: UMLS:C0228450 {source="BIRNLEX:1523"} +is_a: UBERON:0007702 {source="FMA"} ! tract of brain +relationship: part_of UBERON:0002567 {source="NIFSTD"} ! basal part of pons + +[Term] +id: UBERON:0002733 +name: intralaminar nuclear group +def: "The intralaminar nucleus is a nucleus of the thalamus that contains the following nuclei: central lateral centromedian (or 'central medial') paracentral parafascicular. Some sources also include a 'central dorsal' nucleus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Intralaminar_thalamic_nuclei] +subset: uberon_slim +synonym: "ILG" BROAD ABBREVIATION [BIRNLEX:1530, NIFSTD:NeuroNames_abbrevSource] +synonym: "intralaminar group of the dorsal thalamus" RELATED [BAMS:ILM] +synonym: "intralaminar nuclear complex" EXACT [DHBA:ILN] +synonym: "intralaminar nuclear group" EXACT [FMA:62021] +synonym: "intralaminar nuclear group of thalamus" EXACT [FMA:62021] +synonym: "intralaminar nuclei of thalamus" EXACT [FMA:62021] +synonym: "intralaminar nuclei of the dorsal thalamus" RELATED [BAMS:ILM] +synonym: "intralaminar thalamic nuclear group" RELATED [BAMS:ING] +synonym: "intralaminar thalamic nuclear group" RELATED [BAMS:ILM] +synonym: "intralaminar thalamic nuclei" EXACT [FMA:62021] +synonym: "nonspecific thalamic system" EXACT [FMA:62021] +synonym: "nuclei intralaminares (thalami)" EXACT [BIRNLEX:1530] +synonym: "nuclei intralaminares thalami" EXACT LATIN [FMA:62021, FMA:TA] +xref: BAMS:ILG +xref: BAMS:ILM +xref: BAMS:ING +xref: BIRNLEX:1530 +xref: DHBA:10442 +xref: EMAPA:35445 +xref: FMA:62021 +xref: GAID:660 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=317 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=317 {source="BIRNLEX:1530"} +xref: http://en.wikipedia.org/wiki/Intralaminar_thalamic_nuclei +xref: http://www.snomedbrowser.com/Codes/Details/279159009 +xref: MA:0000871 +xref: MBA:51 +xref: MESH:A08.186.211.730.385.826.701.460 +is_a: UBERON:0015233 ! nucleus of dorsal thalamus + +[Term] +id: UBERON:0002734 +name: superior temporal sulcus +def: "The superior temporal sulcus is the sulcus separating the superior temporal gyrus from the middle temporal gyrus in the temporal lobe of the brain. The superior temporal sulcus is the first sulcus inferior to the lateral fissure. It is involved in the perception of where others are gazing and is thus important in determining where others' emotions are being directed. It is also involved in the perception of biological motion." [http://en.wikipedia.org/wiki/Superior_temporal_sulcus] +synonym: "parallel sulcus" EXACT [FMA:83783] +synonym: "STS" BROAD ABBREVIATION [BIRNLEX:1534, NIFSTD:NeuroNames_abbrevSource] +synonym: "sulcus t1" EXACT [FMA:83783] +synonym: "sulcus temporalis primus" RELATED LATIN [NeuroNames:129] +synonym: "sulcus temporalis superior" RELATED LATIN [NeuroNames:129] +synonym: "superior temporal fissure" EXACT [FMA:83783] +xref: BAMS:sts +xref: BIRNLEX:1534 +xref: BM:Tel-Cx-STS +xref: DHBA:10629 +xref: FMA:83783 +xref: HBA:9378 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=129 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=129 {source="BIRNLEX:1534"} +xref: http://en.wikipedia.org/wiki/Superior_temporal_sulcus +xref: http://linkedlifedata.com/resource/umls/id/C0228237 +xref: http://www.snomedbrowser.com/Codes/Details/279344005 +xref: NCIT:C33700 +xref: UMLS:C0228237 {source="ncithesaurus:Superior_Temporal_Sulcus"} +xref: UMLS:C0228237 {source="BIRNLEX:1534"} +is_a: UBERON:0014687 ! temporal sulcus + +[Term] +id: UBERON:0002735 +name: transverse pontine fibers +synonym: "fibrae pontis superficiales" RELATED LATIN [NeuroNames:619] +synonym: "fibrae pontis transversae" EXACT LATIN [FMA:72514, FMA:TA] +synonym: "fibrae transversae superficiales pontis" RELATED LATIN [NeuroNames:619] +synonym: "superficial transverse fibers of pons" EXACT [FMA:72514] +synonym: "transverse fibers of pons" EXACT [FMA:72514] +synonym: "transverse fibers of the pons" RELATED [BAMS:tfp] +synonym: "transverse pontine fibers" EXACT [FMA:72514] +synonym: "transverse pontine fibres" EXACT [FMA:72514] +synonym: "transverse pontine tract" EXACT [FMA:72514] +xref: BAMS:tfp +xref: BAMS:tpf +xref: BIRNLEX:1535 +xref: DHBA:12795 +xref: FMA:72514 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=619 {source="BIRNLEX:1535"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=619 +xref: http://linkedlifedata.com/resource/umls/id/C0228446 +xref: http://www.snomedbrowser.com/Codes/Details/79836003 +xref: UMLS:C0228446 {source="BIRNLEX:1535"} +is_a: UBERON:0007702 {source="FMA"} ! tract of brain +relationship: part_of UBERON:0002567 {source="NIFSTD"} ! basal part of pons + +[Term] +id: UBERON:0002736 +name: lateral nuclear group of thalamus +def: "The lateral nuclear group is a collection of nuclei on the lateral side of the thalamus. According to MeSH, it consists of the following: lateral dorsal nucleus lateral posterior nucleus pulvinar [WP,unvetted]." [http://en.wikipedia.org/wiki/Lateral_nuclear_group] +subset: uberon_slim +synonym: "lateral group of nuclei" EXACT [HBA:DTL] +synonym: "lateral group of the dorsal thalamus" EXACT [BIRNLEX:1537] +synonym: "lateral nuclear group" EXACT [FMA:62174] +synonym: "lateral nuclear group of dorsal thalamus" EXACT [] +synonym: "lateral nuclear group of thalamus" EXACT [FMA:62174] +synonym: "lateral nucleus of thalamus" EXACT [FMA:62174] +synonym: "lateral thalamic group" EXACT [MA:0000862] +synonym: "lateral thalamic nuclear group" RELATED [BAMS:LAT] +synonym: "lateral thalamic nuclear region" RELATED [BAMS:LTh] +synonym: "lateral thalamic nuclei" EXACT [FMA:62174] +synonym: "lateral thalamic nucleus" EXACT [BIRNLEX:1537] +synonym: "LNG" BROAD ABBREVIATION [BIRNLEX:1537, NIFSTD:NeuroNames_abbrevSource] +synonym: "nuclei laterales thalami" EXACT [BIRNLEX:1537] +synonym: "nucleus lateralis thalami" EXACT [BIRNLEX:1537] +xref: BAMS:LAT +xref: BAMS:LNG +xref: BAMS:LTh +xref: BIRNLEX:1537 +xref: CALOHA:TS-2028 +xref: EMAPA:35487 +xref: EV:0100210 +xref: FMA:62174 +xref: GAID:661 +xref: HBA:12923 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=325 {source="BIRNLEX:1537"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=325 +xref: http://en.wikipedia.org/wiki/Lateral_nuclear_group +xref: http://www.snomedbrowser.com/Codes/Details/279126006 +xref: MA:0000862 +xref: MBA:138 +xref: MESH:A08.186.211.730.385.826.701.485 +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +disjoint_from: UBERON:0002739 {source="lexical"} ! medial dorsal nucleus of thalamus + +[Term] +id: UBERON:0002737 +name: lateral inferior limiting sulcus +synonym: "sulcus limitans inferior lateralis" RELATED LATIN [NeuroNames:828] +xref: BAMS:lils +xref: BIRNLEX:1540 +xref: FMA:74523 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=828 {source="BIRNLEX:1540"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=828 +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus + +[Term] +id: UBERON:0002738 +name: isthmus of cingulate gyrus +def: "Component of the cingulate cortex. The rostral and caudal boundaries were the posterior division of the cingulate cortex and the parahippocampal gyrus respectively. The medial and lateral boundaries were the medial wall (area unknown) and the precuneus respectively (Christine Fennema-Notestine)." [BIRNLEX:1541] +synonym: "cingulate gyrus isthmus" EXACT [FMA:62502] +synonym: "isthmus cinguli" RELATED LATIN [NeuroNames:163] +synonym: "isthmus gyri cingulatus" RELATED LATIN [NeuroNames:163] +synonym: "isthmus gyri cinguli" RELATED LATIN [NeuroNames:163] +synonym: "isthmus of cingulate cortex" RELATED [BIRNLEX:1541] +synonym: "isthmus of fornicate gyrus" EXACT [FMA:62502] +synonym: "isthmus of gyrus fornicatus" RELATED LATIN [NeuroNames:163] +synonym: "isthmus of limbic lobe" EXACT [FMA:62502] +synonym: "isthmus of the cingulate gyrus" RELATED [NeuroNames:163] +synonym: "isthmus-2" RELATED LATIN [NeuroNames:163] +xref: BAMS:ICG +xref: BAMS:ICgG +xref: BIRNLEX:1541 +xref: FMA:62502 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=163 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=163 {source="BIRNLEX:1541"} +xref: http://en.wikipedia.org/wiki/Isthmus_of_cingulate_gyrus +xref: http://linkedlifedata.com/resource/umls/id/C0175192 +xref: UMLS:C0175192 {source="BIRNLEX:1541"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002967 ! cingulate gyrus + +[Term] +id: UBERON:0002739 +name: medial dorsal nucleus of thalamus +def: "The medial dorsal nucleus (or dorsomedial nucleus of thalamus) is a large nucleus in the thalamus. It receives inputs from the Pre-Frontal Cortex and the Limbic System and in turn relays them to the Pre-Frontal Association Cortex. As a result, it plays a crucial role in attention, planning, organization, abstract thinking, multi-tasking and active memory. The connections of the medial dorsal nucleus have even been used to delineate the prefrontal cortex of the Göttingen minipig brain. By stereology the number of brain cells in the region has been estimated to around 6.43 million neurons in the adult human brain and 36.3 million glial cells, and with the newborn having quite different numbers: around 11.2 million neurons and 10.6 million glial cells. Lesions of the medial dorsal nucleus have been associated with Wernicke's encephalopathy [WP,unvetted]." [http://en.wikipedia.org/wiki/Medial_dorsal_nucleus] +comment: Editor node: consider generic medial nuclear group and adding medioventral as sibling of this +subset: uberon_slim +synonym: "dorsal medial nucleus of thalamus" EXACT [FMA:62156] +synonym: "dorsal thalamus medial division" RELATED [BAMS:MED] +synonym: "dorsomedial nuclear group" BROAD [FMA:62156] +synonym: "dorsomedial nucleus" BROAD [FMA:62156] +synonym: "dorsomedial nucleus of thalamus" EXACT [FMA:62156] +synonym: "medial dorsal nucleus" BROAD [FMA:62156] +synonym: "medial dorsal nucleus of thalamus" EXACT [FMA:62156] +synonym: "medial dorsal thalamic nucleus" EXACT [BIRNLEX:1543] +synonym: "medial group of the dorsal thalamus" RELATED [BAMS:MED] +synonym: "medial nuclear group" BROAD [FMA:62156] +synonym: "medial nuclear group of thalamus" EXACT [FMA:62156] +synonym: "medial thalamic nuclear group" RELATED [BAMS:MED] +synonym: "medial thalamic nuclei" BROAD [FMA:62156] +synonym: "medial thalamic nucleus" BROAD [FMA:62156] +synonym: "mediodorsal nucleus" BROAD [FMA:62156] +synonym: "mediodorsal nucleus of thalamus" EXACT [DHB:MD] +synonym: "mediodorsal nucleus of the thalamus" RELATED [NeuroNames:312] +synonym: "mediodorsal thalamic nucleus" EXACT [FMA:62156] +synonym: "nuclei mediales (thalami)" RELATED LATIN [NeuroNames:312] +synonym: "nucleus dorsomedialis thalami" EXACT [BIRNLEX:1543] +synonym: "nucleus medialis dorsalis" BROAD [BIRNLEX:1543] +synonym: "nucleus medialis dorsalis (Hassler)" RELATED LATIN [NeuroNames:312] +synonym: "nucleus medialis dorsalis thalami" RELATED LATIN [NeuroNames:312] +synonym: "nucleus mediodorsalis thalami" RELATED [BTO:0002453] +synonym: "nucleus mediodorsalis thalami" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_dorsal_nucleus] +synonym: "nucleus thalamicus mediodorsalis" RELATED LATIN [NeuroNames:312] +xref: BAMS:MD +xref: BAMS:MED +xref: BAMS:MTh +xref: BIRNLEX:1543 +xref: BM:Die-Th-MD +xref: BTO:0002453 +xref: DHBA:10398 +xref: EMAPA:35296 +xref: EV:0100200 +xref: FMA:62156 +xref: GAID:663 +xref: HBA:4401 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=312 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=312 {source="BIRNLEX:1543"} +xref: http://en.wikipedia.org/wiki/Medial_dorsal_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0228329 +xref: http://www.snomedbrowser.com/Codes/Details/279149008 +xref: MA:0000863 +xref: MBA:362 +xref: MESH:A08.186.211.730.385.826.701.490 +xref: NCIT:C32480 +xref: UMLS:C0228329 {source="ncithesaurus:Dorsomedial_Nucleus_of_the_Thalamus"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +disjoint_from: UBERON:0002984 {source="lexical"} ! lateral dorsal nucleus + +[Term] +id: UBERON:0002740 +name: posterior cingulate gyrus +def: "The posterior cingulate cortex is the backmost part of the cingulate cortex, lying behind the anterior cingulate cortex. This is the upper part of the 'limbic lobe'. The cingulate cortex is made up of an area around the midline of the brain. Surrounding areas include the retrosplenial cortex and the precuneus. Cytoarchitectonically posterior cingulate cortex is associated with Brodmann areas 23 and 31. [WP,unvetted]." [http://en.wikipedia.org/wiki/Posterior_cingulate_gyrus] +subset: uberon_slim +synonym: "cGp" BROAD ABBREVIATION [FMA:61924, FMA:CMA] +synonym: "gyrus cinguli posterior" RELATED LATIN [NeuroNames:162] +synonym: "gyrus limbicus posterior" RELATED LATIN [NeuroNames:162] +synonym: "PCgG" BROAD ABBREVIATION [BIRNLEX:1546, NIFSTD:NeuroNames_abbrevSource] +synonym: "posterior cingulate" RELATED [NeuroNames:162] +xref: BAMS:PCgG +xref: BIRNLEX:1546 +xref: FMA:61924 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=162 {source="BIRNLEX:1546"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=162 +xref: http://en.wikipedia.org/wiki/Posterior_cingulate_gyrus +xref: http://linkedlifedata.com/resource/umls/id/C0175191 +xref: UMLS:C0175191 {source="BIRNLEX:1546"} +is_a: UBERON:0000200 ! gyrus +disjoint_from: UBERON:0002756 {source="lexical"} ! anterior cingulate gyrus +relationship: part_of UBERON:0002967 ! cingulate gyrus + +[Term] +id: UBERON:0002741 +name: diagonal band of Broca +def: "A white fibre bundle descending in the precommissural septum toward the base of the forebrain, immediately rostral to the lamina terminalis; at the base, the bundle turns in the caudolateral direction; traveling through the ventral substantia innominata alongside the optic tract, it fades before reaching the amygdala." [BIRNLEX:1551] +subset: uberon_slim +synonym: "band of Broca" RELATED [BTO:0002445] +synonym: "bandaletta diagonalis (Broca)" RELATED [BTO:0002445] +synonym: "bandeletta diagonalis" RELATED LATIN [NeuroNames:285] +synonym: "broca's diagonal band" EXACT [FMA:61973] +synonym: "broca's diagonal gyrus" EXACT [FMA:61973] +synonym: "diagonal band" EXACT [FMA:61973] +synonym: "diagonal band of Broca" EXACT [] +synonym: "diagonal band(Broca)" RELATED [BAMS:db] +synonym: "diagonal gyrus" EXACT [FMA:61973] +synonym: "fasciculus diagonalis Brocae" RELATED LATIN [NeuroNames:285] +synonym: "fasciculus olfactorius" RELATED LATIN [NeuroNames:285] +synonym: "fasciculus olfactorius (hippocampi)" RELATED LATIN [NeuroNames:285] +synonym: "fasciculus olfactorius cornu Ammonis" RELATED LATIN [NeuroNames:285] +synonym: "fasciculus septo-amygdalicus" RELATED LATIN [NeuroNames:285] +synonym: "gyrus diagonalis" RELATED LATIN [NeuroNames:285] +synonym: "gyrus diagonalis rhinencephli" RELATED LATIN [NeuroNames:285] +synonym: "olfactory fasciculus" EXACT [FMA:61973] +synonym: "olfactory radiations of Zuckerkandl" EXACT [] +synonym: "stria diagonalis" RELATED [BTO:0002445] +synonym: "stria diagonalis" RELATED LATIN [http://en.wikipedia.org/wiki/Diagonal_band_of_Broca] +synonym: "stria diagonalis (Broca)" RELATED [BTO:0002445] +xref: BAMS:db +xref: BIRNLEX:1551 +xref: BTO:0002445 +xref: DHBA:12034 +xref: FMA:61973 +xref: GAID:684 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=285 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=285 {source="BIRNLEX:1551"} +xref: http://en.wikipedia.org/wiki/Diagonal_band_of_Broca +xref: http://linkedlifedata.com/resource/umls/id/C0175226 +xref: MESH:D020667 +xref: UMLS:C0175226 {source="BIRNLEX:1551"} +is_a: UBERON:0000122 ! neuron projection bundle +is_a: UBERON:0011215 ! central nervous system cell part cluster +relationship: part_of UBERON:0002437 {source="FMA"} ! cerebral hemisphere white matter + +[Term] +id: UBERON:0002742 +name: lamina of septum pellucidum +def: "One of two layers of both white and gray matter of the septum pellucidum. During fetal development there is a space between the two laminae called the cavum septum pellucidum which, in ninety per cent of cases, disappears during infancy." [http://en.wikipedia.org/wiki/Septum_pellucidum#Layers] +subset: pheno_slim +synonym: "lamina of the septum pellucidum" RELATED [NeuroNames:258] +synonym: "lamina septi pellucidi" RELATED LATIN [NeuroNames:258] +synonym: "laminae septi pellucidi" EXACT PLURAL [] +synonym: "septum pellucidum lamina" EXACT [FMA:62472] +xref: BAMS:lsp +xref: BIRNLEX:1554 +xref: FMA:62472 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=258 {source="BIRNLEX:1554"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=258 +xref: http://linkedlifedata.com/resource/umls/id/C0152278 +xref: http://www.snomedbrowser.com/Codes/Details/12164006 +xref: Layers +xref: UMLS:C0152278 {source="BIRNLEX:1554"} +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +relationship: has_part UBERON:0002020 ! gray matter +relationship: has_part UBERON:0002316 ! white matter +relationship: part_of UBERON:0004714 {source="FMA"} ! septum pellucidum + +[Term] +id: UBERON:0002743 +name: basal forebrain +def: "A region of the brain consisting of ventral and rostral subcortical regions of the telencephalon, including among others, the basal ganglia, septal nuclei, amygdala, ventral pallidum, substantia innominata, and basal nucleus of Meynert." [BIRNLEX:1560] +subset: uberon_slim +synonym: "basal forebrain area" RELATED [NeuroNames:1997] +synonym: "pars basalis telencephali" RELATED LATIN [http://en.wikipedia.org/wiki/Basal_forebrain] +xref: BAMS:Basal_forebrain +xref: Basal:forebrain +xref: BIRNLEX:1560 +xref: BM:Tel-BF +xref: BTO:0002444 +xref: DHBA:10349 +xref: EMAPA:35164 +xref: FMA:77700 +xref: HBA:4300 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1997 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1997 {source="BIRNLEX:1560"} +xref: PBA:128012976 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0001890 {source="BTO"} ! forebrain + +[Term] +id: UBERON:0002744 +name: hilum of dentate nucleus +def: "The mouth of the flasklike dentate nucleus of the cerebellum, directed inward (rostromedial), and giving exit to many of the fibers that compose the superior cerebellar peduncle or brachium conjunctivum." [http://www.drugs.com/dict/hilum-of-dentate-nucleus.html] +synonym: "dentate nuclear hilum" EXACT [FMA:72548] +synonym: "hilum nuclei dentati" RELATED LATIN [NeuroNames:687] +synonym: "hilum of the dentate nucleus" RELATED [NeuroNames:687] +xref: BAMS:hdt +xref: BIRNLEX:1561 +xref: FMA:72548 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=687 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=687 {source="BIRNLEX:1561"} +xref: http://linkedlifedata.com/resource/umls/id/C1289484 +xref: http://www.snomedbrowser.com/Codes/Details/369055003 +xref: UMLS:C1289484 {source="BIRNLEX:1561"} +is_a: UBERON:0008332 {source="FMA"} ! hilum of neuraxis +relationship: part_of UBERON:0002132 {source="NIFSTD"} ! dentate nucleus + +[Term] +id: UBERON:0002745 +name: ventral amygdalofugal projection +synonym: "projectiones ventrales amygdalae" EXACT LATIN [FMA:61977, FMA:TA] +synonym: "tractus amygdalofugalis ventralis" RELATED LATIN [NeuroNames:287] +synonym: "ventral amygdalofugal pathway" EXACT [BIRNLEX:1563] +xref: BAMS:vaf +xref: BIRNLEX:1563 +xref: FMA:61977 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=287 {source="BIRNLEX:1563"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=287 +xref: http://linkedlifedata.com/resource/umls/id/C0175242 +xref: UMLS:C0175242 {source="BIRNLEX:1563"} +is_a: UBERON:0007702 {source="FMA"} ! tract of brain +relationship: part_of UBERON:0002437 {source="FMA"} ! cerebral hemisphere white matter + +[Term] +id: UBERON:0002746 +name: intermediate periventricular nucleus +synonym: "hPe" EXACT LATIN [FMA:62328, FMA:TA] +synonym: "intermediate periventricular hypothalamic nucleus" RELATED [BAMS:IPe] +synonym: "intermediate periventricular nucleus of hypothalamus" EXACT [FMA:62328] +synonym: "intermediate periventricular nucleus of the hypothalamus" RELATED [BAMS:PVI] +synonym: "IPe" BROAD ABBREVIATION [BIRNLEX:1564, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus periventricularis hypothalami" RELATED LATIN [NeuroNames:394] +synonym: "periventricular hypothalamic nucleus, intermediate part" RELATED [NeuroNames:394] +synonym: "periventricular nucleus at the tuberal level" EXACT [FMA:62328] +xref: BAMS:IPe +xref: BAMS:PVI +xref: BIRNLEX:1564 +xref: FMA:62328 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=394 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=394 {source="BIRNLEX:1564"} +xref: http://linkedlifedata.com/resource/umls/id/C0694604 +xref: MBA:118 +xref: UMLS:C0694604 {source="BIRNLEX:1564"} +is_a: UBERON:0006568 ! hypothalamic nucleus +relationship: part_of UBERON:0002555 {source="NIFSTD"} ! intermediate hypothalamic region + +[Term] +id: UBERON:0002747 +name: neodentate part of dentate nucleus +synonym: "neodentate portion of dentate nucleus" EXACT [FMA:72539] +synonym: "neodentate portion of the dentate nucleus" RELATED [NeuroNames:684] +synonym: "pars neodentata" RELATED LATIN [NeuroNames:684] +xref: BAMS:NDt +xref: BIRNLEX:1567 +xref: FMA:72539 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=684 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=684 {source="BIRNLEX:1567"} +xref: http://linkedlifedata.com/resource/umls/id/C0175485 +xref: UMLS:C0175485 {source="BIRNLEX:1567"} +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: part_of UBERON:0002132 ! dentate nucleus + +[Term] +id: UBERON:0002748 +name: medial lemniscus of medulla +def: "Part of medial lemniscus located within the medulla" [BIRNLEX:1570] +synonym: "lemniscus medialis (myelencephali)" RELATED LATIN [NeuroNames:787] +synonym: "medial lemniscus of the medulla" RELATED [NeuroNames:787] +synonym: "medulla medial lemniscus" EXACT [OBOL:automatic] +xref: BAMS:mlm +xref: BIRNLEX:1570 +xref: FMA:72621 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=787 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=787 {source="BIRNLEX:1570"} +xref: http://linkedlifedata.com/resource/umls/id/C0228534 +xref: UMLS:C0228534 {source="BIRNLEX:1570"} +is_a: UBERON:0003001 {source="FMA"} ! nervous system lemniscus +relationship: part_of UBERON:0001896 {source="FMA", source="NIFSTD"} ! medulla oblongata +relationship: part_of UBERON:0003002 {source="NIFSTD"} ! medial lemniscus + +[Term] +id: UBERON:0002749 +name: regional part of cerebellar cortex +def: "A regional part of brain that is part of a cerebellar cortex [Automatically generated definition]." [OBOL:automatic] +subset: non_informative +synonym: "cerebellar cortical segment" EXACT [FMA:76924] +synonym: "segment of cerebellar cortex" EXACT [BIRNLEX:1571] +xref: BIRNLEX:1571 +xref: FMA:76924 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000481 ! multi-tissue structure +intersection_of: part_of UBERON:0002129 ! cerebellar cortex +relationship: part_of UBERON:0002129 ! cerebellar cortex + +[Term] +id: UBERON:0002750 +name: medial longitudinal fasciculus of medulla +def: "A medial longitudinal fasciculus that is part of a medulla [Automatically generated definition]." [OBOL:automatic] +synonym: "fasciculus longitudinalis medialis (myelencephali)" RELATED LATIN [NeuroNames:784] +synonym: "medial longitudinal fasciculus of medulla oblongata" EXACT [OBOL:automatic] +synonym: "medial longitudinal fasciculus of the medulla" RELATED [NeuroNames:784] +synonym: "medulla medial longitudinal fasciculus" EXACT [OBOL:automatic] +xref: BAMS:mlfm +xref: BIRNLEX:1574 +xref: FMA:72618 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=784 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=784 {source="BIRNLEX:1574"} +xref: http://linkedlifedata.com/resource/umls/id/C0228536 +xref: UMLS:C0228536 {source="BIRNLEX:1574"} +is_a: UBERON:0002309 ! medial longitudinal fasciculus +intersection_of: UBERON:0002309 ! medial longitudinal fasciculus +intersection_of: part_of UBERON:0001896 ! medulla oblongata +relationship: part_of UBERON:0001896 ! medulla oblongata + +[Term] +id: UBERON:0002751 +name: inferior temporal gyrus +def: "Component of the temporal lobe, lateral aspect. The rostral boundary is the rostral extent of the inferior temporal sulcus whereas the caudal boundary is designated as the temporo-occipital incisure on the cortical surface. The occipitotemporal sulcus is the medial boundary and the inferior temporal sulcus is the lateral boundary (Christine Fennema-Notestine)." [BIRNLEX:1577] +subset: uberon_slim +synonym: "gyrus temporalis inferior" EXACT [BIRNLEX:1577] +synonym: "gyrus temporalis inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_temporal_gyrus] +synonym: "inferotemporal cortex" RELATED [http://en.wikipedia.org/wiki/Inferior_temporal_gyrus] +synonym: "IT cortex" RELATED ABBREVIATION [http://en.wikipedia.org/wiki/Inferior_temporal_gyrus] +synonym: "lateral occipitotemporal gyrus (heimer-83)" EXACT [] +xref: BAMS:ITG +xref: BIRNLEX:1577 +xref: BM:Tel-ITG +xref: DHBA:12142 +xref: FMA:61907 +xref: HBA:4147 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=138 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=138 {source="BIRNLEX:1577"} +xref: http://en.wikipedia.org/wiki/Inferior_temporal_gyrus +xref: http://www.snomedbrowser.com/Codes/Details/279191005 +xref: NCIT:C32791 +xref: ncithesaurus:Inferior_Temporal_Gyrus +is_a: UBERON:0000200 ! gyrus +relationship: part_of UBERON:0001871 ! temporal lobe + +[Term] +id: UBERON:0002752 +name: olivocerebellar tract +def: "The olivocerebellar tract (olivocerebellar fibers) leaves the olivary nucleus and pass out through the hilum and decussate with those from the opposite olive in the raphé, then as internal arcuate fibers they pass partly through and partly around the opposite olive and enter the inferior peduncle to be distributed to the cerebellar hemisphere of the opposite side from which they arise. They terminate directly on Purkinje cells as the climbing fiber input system. [WP,unvetted]." [http://en.wikipedia.org/wiki/Olivocerebellar_tract] +subset: uberon_slim +synonym: "fibrae olivocerebellares" RELATED LATIN [NeuroNames:804] +synonym: "olivocerebellar fibers" RELATED [NeuroNames:804] +synonym: "t. olivocerebellaris" RELATED LATIN [http://en.wikipedia.org/wiki/Olivocerebellar_tract] +synonym: "tractus olivocerebellaris" RELATED LATIN [NeuroNames:804] +xref: BAMS:oc +xref: BAMS:oct +xref: BIRNLEX:1579 +xref: DHBA:12747 +xref: FMA:72638 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=804 {source="BIRNLEX:1579"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=804 +xref: http://linkedlifedata.com/resource/umls/id/C0175557 +xref: MBA:404 +xref: Olivocerebellar:tract +xref: UMLS:C0175557 {source="BIRNLEX:1579"} +is_a: UBERON:0007702 ! tract of brain +relationship: part_of UBERON:0014649 ! white matter of medulla oblongata + +[Term] +id: UBERON:0002753 +name: posterior spinocerebellar tract +def: "It ascends the dorsal part of the lateral funiculus and enters the cerebellum via the restiform body. Within the cerebellum, its axons terminate in the ipsilateral hindlimb area of the anterior lobe and in the pyramis and the paramedian lobule predominantly ipsilaterally. Rostrally, it extends to lobules I and II. Afferents from the upper trunk, forelimbs, and the neck to the cerebellum." [BIRNLEX:1585] +subset: uberon_slim +synonym: "dorsal spinocerebellar tract" EXACT [FMA:72641] +synonym: "dorsal spinocerebellar tract of the medulla" RELATED [NeuroNames:807] +synonym: "flechsig's tract" EXACT [FMA:72641] +xref: BAMS:dsc +xref: BAMS:psc +xref: BAMS:sctd +xref: BIRNLEX:1585 +xref: BM:DSCT +xref: DHBA:12746 +xref: DMBA:17761 +xref: FMA:72641 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=807 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=807 {source="BIRNLEX:1585"} +xref: http://en.wikipedia.org/wiki/Dorsal_spinocerebellar_tract +xref: http://linkedlifedata.com/resource/umls/id/C0175560 +xref: http://www.snomedbrowser.com/Codes/Details/369284002 +xref: MBA:553 +xref: UMLS:C0175560 {source="BIRNLEX:1585"} +is_a: UBERON:0001018 ! axon tract +disjoint_from: UBERON:0002987 {source="lexical"} ! anterior spinocerebellar tract +relationship: part_of UBERON:0005413 ! spinocerebellar tract + +[Term] +id: UBERON:0002754 +name: predorsal bundle +synonym: "fasciculus praedorsalis (Tschermak)" RELATED LATIN [NeuroNames:780] +synonym: "fasciculus predorsalis" RELATED LATIN [NeuroNames:780] +synonym: "predorsal bundle of Edinger" EXACT [] +synonym: "predorsal fasciculus" EXACT [FMA:72614] +synonym: "tectospinal fibers" EXACT [FMA:72614] +xref: BAMS:pd +xref: BIRNLEX:1590 +xref: FMA:72614 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=780 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=780 {source="BIRNLEX:1590"} +xref: http://linkedlifedata.com/resource/umls/id/C0175542 +xref: UMLS:C0175542 {source="BIRNLEX:1590"} +is_a: UBERON:0005838 {source="FMA"} ! fasciculus of brain +relationship: part_of UBERON:0014649 ! white matter of medulla oblongata + +[Term] +id: UBERON:0002755 +name: pyramidal decussation +def: "Part of medulla comprising a white matter structure containing nerve fibers of the pyramidal tract crossing from one side of the brain to the other (MM)" [BIRNLEX:1594] +subset: pheno_slim +subset: uberon_slim +synonym: "corticospinal decussation" EXACT [FMA:72633] +synonym: "decussatio motoria" RELATED LATIN [NeuroNames:799] +synonym: "decussatio pyramidum" EXACT LATIN [FMA:72633, FMA:TA] +synonym: "decussatio pyramidum medullae oblongatae" EXACT LATIN [FMA:72633, FMA:TA] +synonym: "decussation of corticospinal tract" EXACT [FMA:72633] +synonym: "decussation of pyramidal tract fibers" EXACT [FMA:72633] +synonym: "decussation of pyramids" EXACT [FMA:72633] +synonym: "decussation of pyramids of medulla" EXACT [FMA:72633] +synonym: "decussation of the pyramidal tract" EXACT [BIRNLEX:1594] +synonym: "motor decussation" EXACT [FMA:72633] +synonym: "motor decussation of medulla" EXACT [FMA:72633] +synonym: "pyramidal decussation" RELATED [http://en.wikipedia.org/wiki/Decussation_of_pyramids] +synonym: "pyramidal decussation (pourfour du petit)" EXACT [BIRNLEX:1594] +synonym: "pyramidal tract decussation" EXACT [DMBA:dpy] +xref: BAMS:pyd +xref: BAMS:pyx +xref: BIRNLEX:1594 +xref: BM:Me-PyX +xref: DHBA:12772 +xref: DMBA:17760 +xref: EMAPA:37945 {source="MA:th"} +xref: FMA:72633 +xref: HBA:12965 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=799 {source="BIRNLEX:1594"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=799 +xref: http://en.wikipedia.org/wiki/Decussation_of_pyramids +xref: http://linkedlifedata.com/resource/umls/id/C0011128 +xref: http://www.snomedbrowser.com/Codes/Details/369058001 +xref: MBA:198 +xref: UMLS:C0011128 {source="BIRNLEX:1594"} +is_a: UBERON:0007418 {source="FMA"} ! neural decussation +relationship: part_of UBERON:0002707 {source="NIFSTD"} ! corticospinal tract +relationship: part_of UBERON:0014649 ! white matter of medulla oblongata + +[Term] +id: UBERON:0002756 +name: anterior cingulate gyrus +subset: uberon_slim +synonym: "anterior cingulate" RELATED [NeuroNames:161] +synonym: "cGa" BROAD ABBREVIATION [FMA:61916, FMA:CMA] +synonym: "cingulate gyrus, anterior division" BROAD [http://orcid.org/0000-0001-6755-0259] +synonym: "cortex cingularis anterior" RELATED LATIN [NeuroNames:161] +synonym: "gyrus cinguli anterior" RELATED LATIN [NeuroNames:161] +synonym: "gyrus limbicus anterior" RELATED LATIN [NeuroNames:161] +xref: BAMS:ACgG +xref: BIRNLEX:1603 +xref: FMA:61916 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=161 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=161 {source="BIRNLEX:1603"} +xref: http://linkedlifedata.com/resource/umls/id/C0175190 +xref: UMLS:C0175190 {source="BIRNLEX:1603"} +is_a: UBERON:0000200 ! gyrus +relationship: part_of UBERON:0002967 ! cingulate gyrus +relationship: part_of UBERON:0009835 ! anterior cingulate cortex + +[Term] +id: UBERON:0002757 +name: obsolete regional part of epithalamus +def: "A regional part of brain that is part of a epithalamus [Automatically generated definition]." [OBOL:automatic] +subset: non_informative +synonym: "epithalamus segment" EXACT [FMA:62013] +synonym: "segment of epithalamus" EXACT [BIRNLEX:1607] +is_obsolete: true +consider: BIRNLEX:1607 +consider: FMA:62013 + +[Term] +id: UBERON:0002758 +name: dorsal nucleus of medial geniculate body +def: "Dorsal division of the medial geniculate nucleus, as first defined by Morest (1964) in the cat, but also described in the rat. It fills all but the medial edge of the posterior tip in cat, and joins the lateral thalamic nucleus anteriorly (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1261345/?page=3)" [BIRNLEX:1608] +synonym: "DMG" BROAD ABBREVIATION [BIRNLEX:1608, NIFSTD:NeuroNames_abbrevSource] +synonym: "dorsal medial geniculate nucleus" RELATED [BAMS:MGD] +synonym: "dorsal nucleus of medial geniculate complex" EXACT [FMA:62216] +synonym: "dorsal nucleus of the medial geniculate body" RELATED [NeuroNames:356] +synonym: "medial geniculate complex dorsal part" RELATED [BAMS:MGd] +synonym: "medial geniculate complex, dorsal part" EXACT [BIRNLEX:1608] +synonym: "medial geniculate nucleus dorsal part" RELATED [BAMS:MGd] +synonym: "medial geniculate nucleus dorsal part" RELATED [BAMS:MGD] +synonym: "medial geniculate nucleus, dorsal part" EXACT [BIRNLEX:1608] +synonym: "MGD" BROAD ABBREVIATION [BIRNLEX:1608, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus corporis geniculati medialis, pars dorsalis" EXACT [BIRNLEX:1608] +synonym: "nucleus dorsalis coporis geniculati medialis" RELATED [BTO:0002673] +synonym: "nucleus dorsalis corporis geniculati medialis" EXACT LATIN [FMA:62216, FMA:TA] +synonym: "nucleus geniculatus medialis fibrosus (hassler)" EXACT [BIRNLEX:1608] +synonym: "nucleus geniculatus medialis pars dorsalis" EXACT [BIRNLEX:1608] +xref: BAMS:DMG +xref: BAMS:MGD +xref: BAMS:MGd +xref: BIRNLEX:1608 +xref: BTO:0002673 +xref: DHBA:10435 +xref: FMA:62216 +xref: HBA:265504828 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=356 {source="BIRNLEX:1608"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=356 +xref: MBA:1072 +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0001927 ! medial geniculate body + +[Term] +id: UBERON:0002759 +name: magnocellular nucleus of medial geniculate body +synonym: "corpus geniculatus mediale, pars magnocelluaris" EXACT [BIRNLEX:1612] +synonym: "corpus geniculatus mediale, pars magnocellularis" RELATED LATIN [NeuroNames:358] +synonym: "magnocelluar nucleus of medial geniculate complex" EXACT [BIRNLEX:1612] +synonym: "magnocellular medial geniculate nucleus" RELATED [BAMS:MGM] +synonym: "magnocellular nucleus of medial geniculate complex" RELATED [NeuroNames:358] +synonym: "magnocellular nucleus of the medial geniculate body" RELATED [NeuroNames:358] +synonym: "medial division of medial geniculate body" EXACT [FMA:62218] +synonym: "medial geniculate complex medial part" RELATED [BAMS:MGm] +synonym: "medial geniculate complex, medial part" EXACT [FMA:62218] +synonym: "medial geniculate nucleus medial part" RELATED [BAMS:MGm] +synonym: "medial geniculate nucleus medial part" RELATED [BAMS:MGM] +synonym: "medial geniculate nucleus, medial part" EXACT [FMA:62218] +synonym: "medial magnocellular nucleus of medial geniculate body" EXACT [FMA:62218] +synonym: "medial nucleus of medial geniculate body" EXACT [FMA:62218] +synonym: "MMG" BROAD ABBREVIATION [BIRNLEX:1612, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus corporis geniculati medialis, pars magnocelluaris" EXACT [BIRNLEX:1612] +synonym: "nucleus corporis geniculati medialis, pars magnocellularis" RELATED LATIN [NeuroNames:358] +synonym: "nucleus geniculatus medialis magnocelluaris (hassler)" EXACT [BIRNLEX:1612] +synonym: "nucleus geniculatus medialis magnocellularis (Hassler)" RELATED LATIN [NeuroNames:358] +synonym: "nucleus geniculatus medialis, pars magnocelluaris" EXACT [BIRNLEX:1612] +synonym: "nucleus geniculatus medialis, pars magnocellularis" RELATED LATIN [NeuroNames:358] +synonym: "nucleus medialis magnocellularis corporis geniculati medialis" RELATED [BTO:0002672] +xref: BAMS:MGM +xref: BAMS:MGm +xref: BAMS:MMG +xref: BIRNLEX:1612 +xref: BTO:0002672 +xref: DHBA:10439 +xref: FMA:62218 +xref: HBA:4448 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=358 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=358 {source="BIRNLEX:1612"} +xref: http://linkedlifedata.com/resource/umls/id/C0175296 +xref: MBA:1088 +xref: UMLS:C0175296 {source="BIRNLEX:1612"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0001927 ! medial geniculate body + +[Term] +id: UBERON:0002760 +name: ventral corticospinal tract +def: "Part of pyramidal tract (corticospinal tract) containing uncrossed fibers and traveling in the ventral funiculus of the spinal cord." [BIRNLEX:1618] +subset: pheno_slim +subset: uberon_slim +synonym: "anterior cerebrospinal fasciculus" RELATED [NeuroNames:2955] +synonym: "anterior corticospinal tract" EXACT [FMA:72636] +synonym: "anterior corticospinal tract" RELATED [NeuroNames:2955] +synonym: "anterior corticospinal tract of the medulla" RELATED [NeuroNames:802] +synonym: "anterior pyramidal tract" EXACT [FMA:72636] +synonym: "anterior tract of turck" EXACT [FMA:72636] +synonym: "bundle of Turck" EXACT [FMA:72636] +synonym: "bundle of Turck" RELATED [NeuroNames:2955] +synonym: "column of Turck" EXACT [FMA:72636] +synonym: "corticospinal tract, uncrossed" EXACT [MBA:1028] +synonym: "corticospinal tract, uncrossed" RELATED [NeuroNames:2955] +synonym: "direct corticospinal tract" RELATED [NeuroNames:2955] +synonym: "medial corticospinal tract" RELATED [NeuroNames:2955] +synonym: "tractus corticospinalis anterior" RELATED LATIN [NeuroNames:802] +synonym: "tractus corticospinalis ventralis" RELATED LATIN [NeuroNames:802] +synonym: "uncrossed corticospinal tract" RELATED [NeuroNames:2955] +synonym: "ventral corticospinal tract" RELATED [NeuroNames:2955] +xref: BAMS:vcsp +xref: BIRNLEX:1618 +xref: DHBA:12798 +xref: EMAPA:37889 {source="MA:th"} +xref: FMA:72636 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=802 {source="BIRNLEX:1618"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=802 +xref: http://en.wikipedia.org/wiki/Ventral_corticospinal_tract +xref: http://linkedlifedata.com/resource/umls/id/C0152403 +xref: http://www.snomedbrowser.com/Codes/Details/369092003 +xref: MBA:1028 +xref: UMLS:C0152403 {source="BIRNLEX:1618"} +is_a: UBERON:0001018 ! axon tract +relationship: part_of UBERON:0002707 {source="NIFSTD"} ! corticospinal tract + +[Term] +id: UBERON:0002761 +name: inferior frontal sulcus +def: "The inferior frontal sulcus is a sulcus between the middle frontal gyrus and the inferior frontal gyrus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Inferior_frontal_sulcus] +subset: uberon_slim +synonym: "IFRS" BROAD ABBREVIATION [BIRNLEX:1619, NIFSTD:NeuroNames_abbrevSource] +synonym: "inferior frontal fissure" EXACT [FMA:83757] +synonym: "sulcus f2" EXACT [FMA:83757] +synonym: "sulcus frontalis inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_frontal_sulcus] +synonym: "sulcus frontalis secundus" RELATED LATIN [NeuroNames:63] +xref: BAMS:ifrs +xref: BAMS:ifs +xref: BIRNLEX:1619 +xref: DHBA:10631 +xref: FMA:83757 +xref: HBA:9357 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=63 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=63 {source="BIRNLEX:1619"} +xref: http://en.wikipedia.org/wiki/Inferior_frontal_sulcus +xref: http://linkedlifedata.com/resource/umls/id/C0262251 +xref: http://www.snomedbrowser.com/Codes/Details/279343004 +xref: NCIT:C32776 +xref: UMLS:C0262251 {source="ncithesaurus:Inferior_Frontal_Sulcus"} +is_a: UBERON:0013118 ! sulcus of brain + +[Term] +id: UBERON:0002762 +name: internal medullary lamina of thalamus +def: "Predominantly white regional part of thalamus consisting of a Y shaped bundle of fibers that runs the anterior-posterior length of thalamus and divides the thalamus into roughly three regions (MM: 2006-10-26)" [BIRNLEX:1621] +synonym: "envelope (involucrum medial) (Hassler)" EXACT LATIN [FMA:62079, FMA:TA] +synonym: "internal medullary lamina" EXACT [FMA:62079] +synonym: "internal medullary lamina of thalamus" EXACT [FMA:62079] +synonym: "internal medullary lamina of the thalamus" RELATED [BAMS:iml] +synonym: "internal medullary lamina of the thalamus" RELATED [BAMS:im] +synonym: "lamina medullaris interna" EXACT LATIN [FMA:62079, FMA:TA] +synonym: "lamina medullaris interna thalami" EXACT LATIN [FMA:62079, FMA:TA] +synonym: "lamina medullaris medialis" BROAD LATIN [] +synonym: "lamina medullaris medialis thalami" EXACT LATIN [FMA:62079, FMA:TA] +synonym: "lamina medullaris thalami interna" EXACT LATIN [FMA:62079, FMA:TA] +xref: BAMS:im +xref: BAMS:iml +xref: BIRNLEX:1621 +xref: DHBA:12063 +xref: FMA:62079 +xref: HBA:265505134 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=368 +xref: http://linkedlifedata.com/resource/umls/id/C0228322 +xref: http://www.snomedbrowser.com/Codes/Details/369161003 +xref: MBA:14 +xref: UMLS:C0228322 {source="BIRNLEX:1621"} +is_a: UBERON:0014533 ! medullary lamina of thalamus +relationship: adjacent_to UBERON:0001934 ! dorsomedial nucleus of hypothalamus +relationship: adjacent_to UBERON:0002776 ! ventral nuclear group + +[Term] +id: UBERON:0002763 +name: accessory medullary lamina of globus pallidus +def: "Thin bundle of myelinated axons that divides the medial pallidal segment into outer and inner portions (Carpenter, Core Text of Neuroanatomy, 3rd ed., 1985, pg. 303)." [BIRNLEX:1626] +synonym: "accessory medullar lamina of pallidum" EXACT [BIRNLEX:1626] +synonym: "accessory medullary lamina" EXACT [FMA:62471] +synonym: "accessory medullary lamina of corpus striatum" EXACT [FMA:62471] +synonym: "accessory medullary lamina of globus pallidus" EXACT [FMA:62471] +synonym: "accessory medullary lamina of pallidum" RELATED [NeuroNames:236] +synonym: "accessory medullary lamina pallidus" EXACT [FMA:62471] +synonym: "incomplete medullary lamina of globus pallidus" EXACT [FMA:62471] +synonym: "incomplete medullary lamina of the globus pallidus" RELATED [BAMS:icml] +synonym: "lamella pallidi incompleta" RELATED LATIN [NeuroNames:236] +synonym: "lamina medullaris accessoria" RELATED LATIN [NeuroNames:236] +synonym: "lamina medullaris accessoria corporis striati" EXACT LATIN [FMA:62471, FMA:TA] +synonym: "lamina medullaris incompleta pallidi" RELATED LATIN [NeuroNames:236] +synonym: "lamina pallidi incompleta" RELATED LATIN [NeuroNames:236] +xref: BAMS:aml +xref: BAMS:icml +xref: BIRNLEX:1626 +xref: FMA:62471 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=236 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=236 {source="BIRNLEX:1626"} +xref: http://linkedlifedata.com/resource/umls/id/C0175213 +xref: UMLS:C0175213 {source="BIRNLEX:1626"} +is_a: UBERON:0014532 {source="FMA"} ! white matter lamina of cerebral hemisphere +disjoint_from: UBERON:0002765 {source="NIFSTD"} ! lateral medullary lamina of globus pallidus +relationship: part_of UBERON:0002477 {source="NIFSTD"} ! medial globus pallidus + +[Term] +id: UBERON:0002764 +name: inferior precentral sulcus +synonym: "inferior part of precentral fissure" EXACT [FMA:83764] +synonym: "sulcus praecentralis inferior" EXACT [BIRNLEX:1627] +synonym: "sulcus precentralis inferior" EXACT [BIRNLEX:1627] +xref: BAMS:iprs +xref: BIRNLEX:1627 +xref: FMA:83764 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=72 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=72 {source="BIRNLEX:1627"} +xref: http://linkedlifedata.com/resource/umls/id/C0262257 +xref: UMLS:C0262257 {source="BIRNLEX:1627"} +is_a: UBERON:0014639 ! frontal sulcus +relationship: part_of UBERON:0022252 ! precentral sulcus + +[Term] +id: UBERON:0002765 +name: lateral medullary lamina of globus pallidus +def: "The lateral medullary lamina is a thin white structure located in the basal ganglia of the primate brain. Bounded laterally by the putamen and medially by the globus pallidus, it is defined on the basis of Nissl or myelin stain ( Carpenter-1983 )." [NeuroNames:234] +synonym: "external medulary lamina of globus pallidus" EXACT [BIRNLEX:1634] +synonym: "external medulary lamina of lentiform nucleus" EXACT [BIRNLEX:1634] +synonym: "external medullary lamina of corpus striatum" EXACT [FMA:62469] +synonym: "external medullary lamina of globus pallidus" EXACT [FMA:62469] +synonym: "external medullary lamina of lentiform nucleus" EXACT [FMA:62469] +synonym: "globus pallidus, lamina medullaris externa" RELATED LATIN [NeuroNames:234] +synonym: "lamella pallidi externa" RELATED LATIN [NeuroNames:234] +synonym: "lamina medullaris externa corporis striati" EXACT LATIN [FMA:62469, FMA:TA] +synonym: "lamina medullaris externa pallidi" RELATED LATIN [NeuroNames:234] +synonym: "lamina medullaris lateralis" RELATED LATIN [NeuroNames:234] +synonym: "lamina medullaris lateralis corporis striati" EXACT LATIN [FMA:62469, FMA:TA] +synonym: "lamina pallidi externa" RELATED LATIN [NeuroNames:234] +synonym: "lateral medulary lamina of globus pallidus" EXACT [BIRNLEX:1634] +synonym: "lateral medulary stria" EXACT [BIRNLEX:1634] +synonym: "lateral medullary lamina" EXACT [FMA:62469] +synonym: "lateral medullary lamina of corpus striatum" EXACT [FMA:62469] +synonym: "lateral medullary lamina of globus pallidus" EXACT [FMA:62469] +synonym: "lateral medullary lamina of pallidum" EXACT [FMA:62469] +synonym: "lateral medullary lamina of the globus pallidus" RELATED [BAMS:lml] +synonym: "lateral medullary stria" EXACT [FMA:62469] +synonym: "medulary lamina of pallidum" EXACT [BIRNLEX:1634] +synonym: "outer medulary lamina" EXACT [BIRNLEX:1634] +synonym: "outer medullary lamina" EXACT [FMA:62469] +xref: BAMS:lml +xref: BIRNLEX:1634 +xref: DHBA:12037 +xref: FMA:62469 +xref: HBA:265505086 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=234 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=234 {source="BIRNLEX:1634"} +xref: http://linkedlifedata.com/resource/umls/id/C0152339 +xref: http://www.snomedbrowser.com/Codes/Details/369204004 +xref: UMLS:C0152339 {source="BIRNLEX:1634"} +is_a: UBERON:0014532 {source="FMA"} ! white matter lamina of cerebral hemisphere +relationship: part_of UBERON:0001875 {source="FMA", source="NIFSTD"} ! globus pallidus + +[Term] +id: UBERON:0002766 +name: fusiform gyrus +def: "The fusiform gyrus is part of the temporal lobe. It is also known as the (discontinuous) occipitotemporal gyrus. Other sources have the fusiform gyrus above the occipitotemporal gyrus and underneath the parahippocampal gyrus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Fusiform_gyrus] +subset: uberon_slim +synonym: "gyrus fusiformis" RELATED LATIN [http://en.wikipedia.org/wiki/Fusiform_gyrus] +synonym: "gyrus occipito-temporalis lateralis" RELATED LATIN [NeuroNames:139] +synonym: "gyrus occipitotemporalis lateralis" EXACT LATIN [FMA:61908, FMA:TA] +synonym: "lateral occipito-temporal gyrus" RELATED [NeuroNames:139] +synonym: "lateral occipitotemporal gyrus" EXACT [FMA:61908] +synonym: "medial occipitotemporal gyrus-1 (heimer)" EXACT [] +synonym: "occipito-temporal gyrus" RELATED [BAMS:OTG] +synonym: "occipitotemporal gyrus" EXACT [FMA:61908] +synonym: "t4" RELATED [NeuroNames:139] +xref: BAMS:FuG +xref: BAMS:LOTG +xref: BAMS:OTG +xref: BIRNLEX:1641 +xref: FMA:61908 +xref: Fusiform:gyrus +xref: HBA:4156 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=139 {source="BIRNLEX:1641"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=139 +xref: http://linkedlifedata.com/resource/umls/id/C0152313 +xref: http://www.snomedbrowser.com/Codes/Details/110678003 +xref: NCIT:C33197 +xref: UMLS:C0152313 {source="BIRNLEX:1641"} +is_a: UBERON:0000200 ! gyrus +disjoint_from: UBERON:0002943 {source="lexical"} ! lingual gyrus +relationship: part_of UBERON:0001871 ! temporal lobe + +[Term] +id: UBERON:0002767 +name: inferior rostral sulcus +synonym: "IROS" BROAD ABBREVIATION [BIRNLEX:1642, NIFSTD:NeuroNames_abbrevSource] +synonym: "sulcus rostralis inferior" EXACT [BIRNLEX:1642] +xref: BAMS:iros +xref: BIRNLEX:1642 +xref: DHBA:146034844 +xref: FMA:83767 +xref: HBA:9367 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=75 {source="BIRNLEX:1642"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=75 +xref: http://linkedlifedata.com/resource/umls/id/C0694584 +xref: UMLS:C0694584 {source="BIRNLEX:1642"} +is_a: UBERON:0013118 ! sulcus of brain + +[Term] +id: UBERON:0002768 +name: vestibulospinal tract +def: "A long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the vestibular nucleus of the pons towards target cells in the spinal cord[GO]." [GO:0021962] +subset: uberon_slim +subset: vertebrate_core +synonym: "tractus vestibulospinalis" RELATED LATIN [http://en.wikipedia.org/wiki/Vestibulospinal_tract] +synonym: "vestibulo-spinal tract" EXACT [ZFA:0000709] +synonym: "vestibulo-spinal tracts" RELATED PLURAL [ZFA:0000709] +synonym: "vestibulospinal pathway" RELATED [NeuroNames:812] +synonym: "vestibulospinal tracts" RELATED [NeuroNames:812] +xref: BAMS:vs +xref: BIRNLEX:1643 +xref: FMA:72646 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=812 {source="BIRNLEX:1643"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=812 +xref: http://linkedlifedata.com/resource/umls/id/C0152404 +xref: http://www.snomedbrowser.com/Codes/Details/369289007 +xref: MBA:941 +xref: TAO:0000709 +xref: UMLS:C0152404 {source="BIRNLEX:1643"} +xref: Vestibulospinal:tract +xref: ZFA:0000709 +is_a: UBERON:0007702 {source="FMA"} ! tract of brain + +[Term] +id: UBERON:0002769 +name: superior temporal gyrus +def: "Component of the temporal lobe, lateral aspect. The rostral boundary is the rostral extent of the ssuperior temporal sulcus. The caudal boundary is the cauday portion of the superior temporal gyrus (posterior to becoming continuous with the supramarginal gyrus). The medial boundary is the lateral fissure (and when present the supramarginal gyrus), and the lateral boundary is the superior temporal suclus (Christine Fennema-Notestine)." [BIRNLEX:1648] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "gyrus temporalis superior" EXACT [BIRNLEX:1648] +synonym: "gyrus temporalis superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_temporal_gyrus] +xref: BAMS:STG +xref: BIRNLEX:1648 +xref: BM:Tel-STG +xref: DHBA:12140 +xref: EFO:0001944 +xref: FMA:61905 +xref: HBA:4133 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=136 {source="BIRNLEX:1648"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=136 +xref: http://en.wikipedia.org/wiki/Superior_temporal_gyrus +xref: http://linkedlifedata.com/resource/umls/id/C0152309 +xref: http://www.snomedbrowser.com/Codes/Details/362345008 +xref: NCIT:C33698 +xref: ncithesaurus:Superior_Temporal_Gyrus +xref: UMLS:C0152309 {source="BIRNLEX:1648"} +is_a: UBERON:0000200 ! gyrus +relationship: contributes_to_morphology_of UBERON:0001871 ! temporal lobe +relationship: part_of UBERON:0001871 ! temporal lobe + +[Term] +id: UBERON:0002770 +name: posterior hypothalamic region +def: "The part of the hypothalamus posterior to the middle region consisting of several nuclei including the medial mamillary nucleus, lateral mamillary nucleus, and posterior hypothalamic nucleus (posterior hypothalamic area). The posterior hypothalamic area is concerned with control of sympathetic responses and is sensitive to conditions of decreasing temperature and controls the mechanisms for the conservation and increased production of heat." [MESH:A08.186.211.730.385.357.362] +synonym: "hypothalamus posterior" RELATED LATIN [NeuroNames:411] +synonym: "mammillary level of hypothalamus" EXACT [FMA:62029] +synonym: "mammillary region" EXACT [FMA:62029] +synonym: "PHR" BROAD ABBREVIATION [BIRNLEX:1651, NIFSTD:NeuroNames_abbrevSource] +synonym: "posterior hypothalamus" EXACT [FMA:62029] +synonym: "regio hypothalamica posterior" RELATED LATIN [NeuroNames:411] +xref: BAMS:PH +xref: BAMS:PHR +xref: BIRNLEX:1651 +xref: FMA:62029 +xref: GAID:651 +xref: HBA:4665 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=411 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=411 {source="BIRNLEX:1651"} +xref: http://linkedlifedata.com/resource/umls/id/C0020670 +xref: Mammillary:process +xref: MESH:A08.186.211.730.385.357.362 +xref: UMLS:C0020670 {source="BIRNLEX:1651"} +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0001898 ! hypothalamus + +[Term] +id: UBERON:0002771 +name: middle temporal gyrus +def: "Component of the temporal lobe, lateral aspect. The rostral boundary is the rostral extent of the superior temporal sulcus whereas the caudal boundary is the temporo-occipital incisure on the cortical surface. The superior temporal sulcus is the medial boundary and the inferior temporal sulcus is the lateral boundary (Christine Fennema-Notestine)." [BIRNLEX:1653] +subset: efo_slim +subset: uberon_slim +synonym: "gyrus temporalis medius" EXACT [BIRNLEX:1653] +synonym: "inferior temporal gyrus (Seltzer)" RELATED [NeuroNames:137] +synonym: "intermediate temporal gyrus" EXACT [FMA:61906] +synonym: "medial temporal gyrus" RELATED [http://en.wikipedia.org/wiki/Middle_temporal_gyrus] +synonym: "middle (medial) temporal gyrus" RELATED [BAMS:MTG] +xref: BAMS:MTG +xref: BIRNLEX:1653 +xref: DHBA:12141 +xref: EFO:0002466 +xref: FMA:61906 +xref: HBA:4140 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=137 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=137 {source="BIRNLEX:1653"} +xref: http://en.wikipedia.org/wiki/Middle_temporal_gyrus +xref: http://linkedlifedata.com/resource/umls/id/C0152310 +xref: http://www.snomedbrowser.com/Codes/Details/279190006 +xref: NCIT:C33125 +xref: ncithesaurus:Middle_Temporal_Gyrus +xref: UMLS:C0152310 {source="BIRNLEX:1653"} +is_a: UBERON:0000200 ! gyrus +relationship: part_of UBERON:0001871 ! temporal lobe + +[Term] +id: UBERON:0002772 +name: olfactory sulcus +def: "The medial orbital gyrus presents a well-marked antero-posterior sulcus, the olfactory sulcus, for the olfactory tract. [WP,unvetted]." [http://en.wikipedia.org/wiki/Olfactory_sulcus] +subset: uberon_slim +synonym: "olfactory groove" EXACT [BIRNLEX:1655] +synonym: "OLFS" BROAD ABBREVIATION [BIRNLEX:1655, NIFSTD:NeuroNames_abbrevSource] +synonym: "sulcus olfactorius" EXACT [BIRNLEX:1655] +synonym: "sulcus olfactorius lobi frontalis" RELATED LATIN [http://en.wikipedia.org/wiki/Olfactory_sulcus] +xref: BAMS:olfs +xref: BIRNLEX:1655 +xref: BM:Tel-Cx-OFS +xref: DHBA:10624 +xref: FMA:83769 +xref: HBA:9361 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=78 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=78 {source="BIRNLEX:1655"} +xref: http://linkedlifedata.com/resource/umls/id/C0228205 +xref: http://linkedlifedata.com/resource/umls/id/C1281082 +xref: http://www.snomedbrowser.com/Codes/Details/279358007 +xref: NCIT:C33206 +xref: Olfactory:sulcus +xref: UMLS:C0228205 {source="ncithesaurus:Olfactory_Sulcus"} +xref: UMLS:C0228205 {source="BIRNLEX:1655"} +xref: UMLS:C1281082 {source="BIRNLEX:1655"} +is_a: UBERON:0013118 ! sulcus of brain + +[Term] +id: UBERON:0002773 +name: anterior transverse temporal gyrus +def: "The transverse temporal gyri (also called Heschl's gyri or Heschl's convolutions) are found in the area of primary auditory cortex in the superior temporal gyrus of the human brain, occupying Brodmann areas 41 and 42. It is the first cortical structure to process incoming auditory information. Anatomically, the transverse temporal gyri are distinct in that they run mediolaterally (towards the center of the brain) rather than dorsiventrally (front to back) as all other temporal lobe gyri run. The Heschl's gyri are named after Richard L. Heschl." [http://en.wikipedia.org/wiki/Transverse_temporal_gyrus] +synonym: "anterior transverse convolution of heschl" EXACT [BIRNLEX:1657] +synonym: "anterior transverse temporal convolution of heschl" EXACT [] +synonym: "first transverse gyrus of Heschl" EXACT [] +synonym: "great transverse gyrus of Heschl" EXACT [] +synonym: "gyrus temporalis transversus anterior" RELATED LATIN [NeuroNames:134] +synonym: "gyrus temporalis transversus primus" RELATED LATIN [NeuroNames:134] +xref: BAMS:ATTG +xref: BIRNLEX:1657 +xref: FMA:61909 +xref: FMA:71029 +xref: HBA:4165 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=134 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=134 {source="BIRNLEX:1657"} +xref: http://en.wikipedia.org/wiki/Transverse_temporal_gyrus +xref: http://linkedlifedata.com/resource/umls/id/C0262198 +xref: http://www.snomedbrowser.com/Codes/Details/279192003 +xref: UMLS:C0262198 {source="BIRNLEX:1657"} +is_a: UBERON:0003939 ! transverse gyrus of Heschl +disjoint_from: UBERON:0002774 {source="lexical"} ! posterior transverse temporal gyrus + +[Term] +id: UBERON:0002774 +name: posterior transverse temporal gyrus +synonym: "gyrus temporalis transversus posterior" RELATED LATIN [NeuroNames:135] +synonym: "posterior transverse convolution of heschl" EXACT [BIRNLEX:1661] +synonym: "posterior transverse temporal convolution of heschl" EXACT [] +xref: BAMS:PTTG +xref: BIRNLEX:1661 +xref: FMA:61910 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=135 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=135 {source="BIRNLEX:1661"} +xref: http://linkedlifedata.com/resource/umls/id/C0262320 +xref: http://www.snomedbrowser.com/Codes/Details/279193008 +xref: UMLS:C0262320 {source="BIRNLEX:1661"} +is_a: UBERON:0003939 ! transverse gyrus of Heschl + +[Term] +id: UBERON:0002775 +name: olivocochlear bundle +def: "A pathway that terminates on the hair cells of the cochlea or equivalent organ in the inner ear." [ISBN:0471888893] +synonym: "bundle of Rasmussen" EXACT [] +synonym: "efferent cochlear bundle" EXACT [FMA:72485] +synonym: "efferent cochlear pathway" EXACT [FMA:72485] +synonym: "olivocochlear bundle of rasmussen" EXACT [ISBN:0471888893] +synonym: "olivocochlear tract" EXACT [FMA:72485] +synonym: "tractus olivocochlearis" EXACT LATIN [FMA:72485, FMA:TA] +xref: BAMS:ocb +xref: BIRNLEX:1666 +xref: DHBA:12771 +xref: FMA:72485 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=577 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=577 {source="BIRNLEX:1666"} +xref: http://linkedlifedata.com/resource/umls/id/C0228447 +xref: http://www.snomedbrowser.com/Codes/Details/369030009 +xref: UMLS:C0228447 {source="BIRNLEX:1666"} +is_a: UBERON:0007702 {source="FMA"} ! tract of brain +relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum + +[Term] +id: UBERON:0002776 +name: ventral nuclear group +def: "Nuclei in the ventral part of the thalamus, involved in modulating activity of dorsal thalamic nuclei." [ISBN:0471888893] +subset: uberon_slim +synonym: "dorsal thalamus, ventral group" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "nuclei ventrales thalami" EXACT [BIRNLEX:1669] +synonym: "ventral dorsal thalamic nuclear group" RELATED [BAMS:VENT] +synonym: "ventral group of dorsal thalamus" EXACT [BIRNLEX:1669] +synonym: "ventral group of the dorsal thalamus" RELATED [BAMS:VENT] +synonym: "ventral nuclear group" EXACT [FMA:62022] +synonym: "ventral nuclear group of thalamus" EXACT [FMA:62022] +synonym: "ventral nuclear mass" EXACT [FMA:62022] +synonym: "ventral nuclei of thalamus" EXACT [FMA:62022] +synonym: "ventral thalamus nucleus" RELATED [ZFA:0005576] +synonym: "ventral tier thalamic nuclei" EXACT [FMA:62022] +synonym: "VNG" BROAD ABBREVIATION [BIRNLEX:1669, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:VENT +xref: BAMS:VNG +xref: BIRNLEX:1669 +xref: BTO:0002467 +xref: DMBA:16423 +xref: EV:0100206 +xref: FMA:62022 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=333 {source="BIRNLEX:1669"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=333 +xref: http://en.wikipedia.org/wiki/Ventral_nuclear_group +xref: http://linkedlifedata.com/resource/umls/id/C0228333 +xref: http://www.snomedbrowser.com/Codes/Details/279125005 +xref: MBA:637 +xref: UMLS:C0228333 {source="BIRNLEX:1669"} +xref: ZFA:0005576 +is_a: UBERON:0015233 ! nucleus of dorsal thalamus + +[Term] +id: UBERON:0002777 +name: obsolete neostriatum +subset: uberon_slim +xref: GAID:669 +is_obsolete: true +consider: BIRNLEX:1672 +consider: FMA:77617 + +[Term] +id: UBERON:0002778 +name: ventral pallidum +def: "Part of the globus pallidus, consisting of the more medial of the two segments. In some species, e.g., primates, it is separated from the lateral segment by the fibers of the medial medullary lamina (MM)." [BIRNLEX:1674] +synonym: "fibrae nervi vagi" RELATED LATIN [NeuroNames:794] +synonym: "globus pallidus ventral part" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "pallidum ventral region" RELATED [BAMS:PALv] +synonym: "ventral globus pallidus" RELATED [BTO:0004375] +synonym: "ventral pallidum" EXACT [BIRNLEX:1674] +xref: BAMS:PALv +xref: BIRNLEX:1674 +xref: BM:Tel-VPa +xref: BTO:0004375 +xref: DHBA:10345 +xref: DMBA:15844 +xref: FMA:77613 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=794 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=794 {source="BIRNLEX:1674"} +xref: MBA:835 +is_a: UBERON:0005401 ! cerebral hemisphere gray matter +is_a: UBERON:0006514 {source="FMA"} ! pallidum +relationship: part_of UBERON:0001875 {source="BTO", source="NIF-def"} ! globus pallidus +relationship: part_of UBERON:0002743 {source="NIFSTD"} ! basal forebrain + +[Term] +id: UBERON:0002779 +name: lateral superior olivary nucleus +def: "One of two recognized nuclei comprising the superior olive. The lateral superior olivary nucleus is much less prominent in humans than in many rodents and carnivores. In the latter species, it is frequently described as S- or V-shaped." [BIRNLEX:1675] +subset: uberon_slim +synonym: "accessory olivary nucleus" EXACT [FMA:72472] +synonym: "accessory superior olivary nucleus" EXACT [FMA:72472] +synonym: "accessory superior olive" EXACT [FMA:72472] +synonym: "inferior olivary complex dorsalaccessory nucleus" RELATED [BAMS:IOda] +synonym: "lateral superior olive" EXACT [FMA:72472] +synonym: "LSON" EXACT ABBREVIATION [] +synonym: "nucleus olivaris superior lateralis" RELATED LATIN [NeuroNames:571] +synonym: "superior olivary complex, lateral part" RELATED [NeuroNames:571] +synonym: "superior olivary nucleus, lateral part" EXACT [FMA:72472] +synonym: "superior olive lateral part" EXACT [] +xref: BAMS:IOda +xref: BAMS:LSO +xref: BIRNLEX:1675 +xref: BM:Pons-SOL +xref: DHBA:12469 +xref: DMBA:17261 +xref: FMA:72472 +xref: HBA:9183 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=571 {source="BIRNLEX:1675"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=571 +xref: http://linkedlifedata.com/resource/umls/id/C0175429 +xref: http://www.snomedbrowser.com/Codes/Details/360477003 +xref: MBA:114 +xref: Olivary:body +xref: UMLS:C0175429 {source="BIRNLEX:1675"} +is_a: UBERON:0007247 ! nucleus of superior olivary complex +disjoint_from: UBERON:0002782 {source="lexical"} ! medial superior olivary nucleus +relationship: part_of UBERON:0022434 {source="NIFSTD"} ! primary superior olive + +[Term] +id: UBERON:0002780 +name: obsolete regional part of forebrain +def: "A regional part of brain that is part of a forebrain [Automatically generated definition]." [OBOL:automatic] +subset: non_informative +synonym: "forebrain segment" EXACT [FMA:61996] +synonym: "segment of forebrain" EXACT [BIRNLEX:1677] +is_obsolete: true +consider: BIRNLEX:1677 +consider: FMA:61996 + +[Term] +id: UBERON:0002781 +name: caudal part of ventral posterolateral nucleus of thalamus +synonym: "caudal part of the ventral posterolateral nucleus" RELATED [NeuroNames:346] +synonym: "caudal part of ventral posterolateral nucleus" EXACT [FMA:62206] +synonym: "nucleus ventralis caudalis lateralis" RELATED LATIN [NeuroNames:346] +synonym: "nucleus ventralis posterior lateralis, pars caudalis" RELATED LATIN [NeuroNames:346] +synonym: "nucleus ventralis posterior pars lateralis (Dewulf)" RELATED LATIN [NeuroNames:346] +synonym: "nucleus ventralis posterolateralis (Walker)" RELATED LATIN [NeuroNames:346] +synonym: "nucleus ventrocaudalis externus (Van Buren)" RELATED LATIN [NeuroNames:346] +synonym: "ventral posterior lateral nucleus (ilinsky)" EXACT [] +synonym: "ventral posterolateral nucleus, caudal part" EXACT [FMA:62206] +synonym: "ventral posterolateral thalamic nucleus, caudal part" EXACT [FMA:62206] +synonym: "ventral posterolateral thalamic nucleus, posterior part" RELATED [BAMS:VPLp] +synonym: "VPLC" BROAD ABBREVIATION [BIRNLEX:1681, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:VPLC +xref: BAMS:VPLp +xref: BIRNLEX:1681 +xref: DHBA:266441515 +xref: FMA:62206 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=346 {source="BIRNLEX:1681"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=346 +xref: http://linkedlifedata.com/resource/umls/id/C0175287 +xref: UMLS:C0175287 {source="BIRNLEX:1681"} +is_a: UBERON:0019269 ! gray matter of diencephalon +relationship: part_of UBERON:0002942 {source="NIFSTD"} ! ventral posterolateral nucleus + +[Term] +id: UBERON:0002782 +name: medial superior olivary nucleus +def: "One of two subnuclei of the superior olive located within the caudal pontine tegmentum. Appears as a parasagittal row of transversely oriented bipolar neurons in transverse sections of human, with elongated somata in humans and other primates and large caliber dendrites." [BIRNLEX:1682] +subset: defined_by_cytoarchitecture +subset: uberon_slim +synonym: "chief nucleus of superior olive" EXACT [FMA:72473] +synonym: "chief superior olivary nucleus" EXACT [FMA:72473] +synonym: "main superior olivary nucleus" EXACT [FMA:72473] +synonym: "medial superior olive" EXACT [FMA:72473] +synonym: "MSO" RELATED ABBREVIATION [BIRNLEX:1682] +synonym: "nucleus laminaris" RELATED [BIRNLEX:1682] +synonym: "nucleus olivaris superior medialis" RELATED LATIN [NeuroNames:572] +synonym: "principal superior olivary nucleus" EXACT [FMA:72473] +synonym: "superior olivary complex, medial part" RELATED [NeuroNames:572] +synonym: "superior olivary nucleus, medial part" EXACT [FMA:72473] +synonym: "superior olive medial part" EXACT [] +synonym: "superior paraolivary nucleus" RELATED [NeuroNames:572] +synonym: "superior parolivary nucleus" RELATED [NeuroNames:572] +xref: BAMS:MSO +xref: BIRNLEX:1682 +xref: BM:Pons-SOM +xref: DHBA:12470 +xref: DMBA:17262 +xref: FMA:226223 +xref: FMA:72473 +xref: HBA:9184 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=572 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=572 {source="BIRNLEX:1682"} +xref: http://en.wikipedia.org/wiki/Superior_olivary_complex +xref: http://linkedlifedata.com/resource/umls/id/C0175430 +xref: MBA:105 +xref: UMLS:C0175430 {source="BIRNLEX:1682"} +is_a: UBERON:0007247 ! nucleus of superior olivary complex +relationship: part_of UBERON:0022434 {source="NIFSTD"} ! primary superior olive + +[Term] +id: UBERON:0002783 +name: central tegmental tract of pons +synonym: "central tegmental tract of the pons" RELATED [NeuroNames:601] +synonym: "tractus tegmentalis centralis (pontis)" RELATED LATIN [NeuroNames:601] +xref: BAMS:ctgp +xref: BIRNLEX:1683 +xref: FMA:72494 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=601 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=601 {source="BIRNLEX:1683"} +xref: http://linkedlifedata.com/resource/umls/id/C0228443 +xref: UMLS:C0228443 {source="BIRNLEX:1683"} +is_a: UBERON:0007702 {source="FMA"} ! tract of brain +relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum +relationship: part_of UBERON:0009643 ! central tegmental tract + +[Term] +id: UBERON:0002784 +name: obsolete regional part of diencephalon +def: "A regional part of brain that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] +subset: non_informative +synonym: "diencephalon segment" EXACT [FMA:62005] +is_obsolete: true +consider: BIRNLEX:1685 +consider: FMA:62005 +consider: SCTID:119264001 + +[Term] +id: UBERON:0002785 +name: obsolete regional part of lateral hypothalamic region +def: "A multi-tissue structure that is part of a lateral hypothalamic area." [OBOL:automatic] +subset: non_informative +synonym: "lateral hypothalamic region segment" EXACT [FMA:62312] +synonym: "segment of lateral hypothalamic region" EXACT [BIRNLEX:1687] +is_obsolete: true +consider: BIRNLEX:1687 +consider: FMA:62312 + +[Term] +id: UBERON:0002786 +name: root of abducens nerve +def: "Nerve fibers arising from motor neurons in the abducens nucleus that are contained within the pontine tegmentum" [BIRNLEX:1689] +synonym: "abducens nerve fibers" EXACT [FMA:72491] +synonym: "abducens nerve root" RELATED [BIRNLEX:1277] +synonym: "abducens nerve tract" EXACT [FMA:72491] +synonym: "abducens nerve/root" RELATED [BAMS:6n] +synonym: "central part of abducens nerve" EXACT [FMA:72491] +synonym: "fibrae nervi abducentis" RELATED LATIN [NeuroNames:598] +synonym: "root of abducens nerve" EXACT [FMA:72491] +xref: BAMS:6n +xref: BAMS:6nf +xref: BIRNLEX:1277 +xref: BIRNLEX:1689 +xref: DHBA:12861 +xref: DMBA:17741 +xref: FMA:72491 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=598 {source="BIRNLEX:1689"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=598 +xref: http://linkedlifedata.com/resource/umls/id/C0175450 +xref: UMLS:C0175450 {source="BIRNLEX:1689"} +is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve +intersection_of: UBERON:0006843 ! root of cranial nerve +intersection_of: extends_fibers_into UBERON:0001646 ! abducens nerve +relationship: extends_fibers_into UBERON:0001646 ! abducens nerve +relationship: part_of UBERON:0001896 {source="ZFA-abduced"} ! medulla oblongata + +[Term] +id: UBERON:0002787 +name: decussation of trochlear nerve +def: "the crossing of the two trochlear nerves at their exit through the velum medullare anterius." [http://www.medilexicon.com/medicaldictionary.php?t=23125] +synonym: "decussatio fibrarum nervorum trochlearium" EXACT LATIN [http://www.medilexicon.com/medicaldictionary.php?t=23125] +synonym: "decussatio nervorum trochlearium" RELATED LATIN [NeuroNames:595] +synonym: "decussatio trochlearis" RELATED LATIN [NeuroNames:595] +synonym: "decussation of the trochlear nerve" RELATED [NeuroNames:595] +synonym: "decussation of trochlear nerve (IV)" EXACT [FMA:72488] +synonym: "decussation of trochlear nerve fibers" EXACT [DHBA:12338] +synonym: "trochlear decussation" RELATED [BAMS:4x] +synonym: "trochlear nerve decussation" RELATED [NeuroNames:595] +synonym: "trochlear neural decussation" EXACT [FMA:72488] +xref: BAMS:4x +xref: BAMS:IVd +xref: BIRNLEX:1690 +xref: DHBA:12338 +xref: FMA:72488 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=595 {source="BIRNLEX:1690"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=595 +xref: http://linkedlifedata.com/resource/umls/id/C0175448 +xref: MBA:384 +xref: UMLS:C0175448 {source="BIRNLEX:1690"} +is_a: UBERON:0007418 ! neural decussation +intersection_of: UBERON:0007418 ! neural decussation +intersection_of: extends_fibers_into UBERON:0001644 ! trochlear nerve +relationship: extends_fibers_into UBERON:0001644 ! trochlear nerve +relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum + +[Term] +id: UBERON:0002788 +name: anterior nuclear group +def: "Mostly gray regional part of anterior thalamic region, consisting of the anterior medial, anterior dorsal and anterior lateral thalamic nuclei in primates. In rodents, it consists of anterior medial and anterior ventral divisions, with several subdivisions of each, according to Paxinos (MM: 2006-10-26)" [BIRNLEX:1692] +subset: uberon_slim +subset: vertebrate_core +synonym: "ANG" BROAD ABBREVIATION [BIRNLEX:1692, NIFSTD:NeuroNames_abbrevSource] +synonym: "anterior group of thalamus" RELATED [BAMS:ATN] +synonym: "anterior group of the dorsal thalamus" RELATED [BAMS:ATN] +synonym: "anterior nuclear group" EXACT [FMA:62019] +synonym: "anterior nuclear group of thalamus" EXACT [FMA:62019] +synonym: "anterior nuclear group of the thalamus" RELATED [NeuroNames:302] +synonym: "anterior nuclei of thalamus" EXACT [FMA:62019] +synonym: "anterior nucleus of thalamus" EXACT [FMA:62019] +synonym: "anterior thalamic group" EXACT [MA:0000861] +synonym: "anterior thalamic nuclear group" RELATED [BAMS:ATN] +synonym: "anterior thalamic nuclei" EXACT [FMA:62019] +synonym: "anterior thalamic nucleus" RELATED [NeuroNames:302] +synonym: "anterior thalamus" EXACT [BIRNLEX:1692] +synonym: "dorsal thalamus anterior division" RELATED [BAMS:ATN] +synonym: "nuclei anterior thalami" EXACT [BIRNLEX:1692] +synonym: "nuclei anteriores (thalami)" EXACT [BIRNLEX:1692] +synonym: "nuclei anteriores thalami" EXACT [BIRNLEX:1692] +synonym: "nuclei thalamicus anterior" EXACT [BIRNLEX:1692] +synonym: "nucleus anterior thalami" RELATED LATIN [NeuroNames:302] +synonym: "nucleus thalamicus anterior" RELATED LATIN [NeuroNames:302] +synonym: "rostral thalamic nucleus" RELATED [TAO:0000427] +xref: BAMS:ANG +xref: BAMS:asan +xref: BAMS:ATh +xref: BAMS:ATN +xref: BIRNLEX:1692 +xref: DHBA:10392 +xref: EMAPA:35132 +xref: EV:0100196 +xref: FMA:62019 +xref: GAID:658 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2883 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=302 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=302 {source="BIRNLEX:1692"} +xref: http://en.wikipedia.org/wiki/Anterior_nuclear_group +xref: http://linkedlifedata.com/resource/umls/id/C0228316 +xref: http://www.snomedbrowser.com/Codes/Details/279124009 +xref: MA:0000861 +xref: MBA:239 +xref: MESH:A08.186.211.730.385.826.701.080 +xref: TAO:0000427 +xref: UMLS:C0228316 {source="BIRNLEX:1692"} +xref: ZFA:0000427 +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +disjoint_from: UBERON:0003030 {source="lexical"} ! posterior nucleus of thalamus + +[Term] +id: UBERON:0002789 +name: obsolete regional part of posterior hypothalamic region +def: "A regional part of brain that is part of a posterior hypothalamic region [Automatically generated definition]." [OBOL:automatic] +subset: non_informative +synonym: "posterior hypothalamic region segment" EXACT [FMA:62311] +synonym: "segment of posterior hypothalamic region" EXACT [BIRNLEX:1697] +is_obsolete: true +consider: BIRNLEX:1697 +consider: FMA:62311 + +[Term] +id: UBERON:0002790 +name: dorsal acoustic stria +def: "white matter structure containing fibers arising from the cochlear nuclear complex" [BIRNLEX:1698] +synonym: "dorsal acoustic stria (Monakow)" RELATED [NeuroNames:602] +synonym: "posterior acoustic stria" EXACT [FMA:72496] +synonym: "stria cochlearis posterior" EXACT LATIN [FMA:72496, FMA:TA] +synonym: "striae acusticae dorsalis" RELATED LATIN [NeuroNames:602] +xref: BAMS:das +xref: BIRNLEX:1698 +xref: DHBA:12733 +xref: FMA:72496 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=602 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=602 {source="BIRNLEX:1698"} +xref: http://linkedlifedata.com/resource/umls/id/C0175454 +xref: MBA:506 +xref: UMLS:C0175454 {source="BIRNLEX:1698"} +is_a: UBERON:0013199 {source="FMA"} ! stria of neuraxis +is_a: UBERON:0019293 ! white matter of pontine tegmentum +disjoint_from: UBERON:0003046 {source="lexical"} ! ventral acoustic stria + +[Term] +id: UBERON:0002791 +name: obsolete regional part of telencephalon +def: "A regional part of brain that is part of a telencephalon [Automatically generated definition]." [OBOL:automatic] +subset: non_informative +synonym: "segment of telencephalon" EXACT [BIRNLEX:1700] +synonym: "telencephalon segment" EXACT [FMA:62374] +is_obsolete: true +consider: BIRNLEX:1700 +consider: FMA:62374 + +[Term] +id: UBERON:0002792 +name: lumbar spinal cord +def: "." [http://en.wikipedia.org/wiki/Lumbar_spinal_cord] +subset: uberon_slim +synonym: "lumbar segment of spinal cord" EXACT [FMA:71168] +synonym: "lumbar segments of spinal cord [1-5]" EXACT [FMA:71168] +synonym: "lumbar spinal cord" EXACT [FMA:71168] +synonym: "pars lumbalis medullae spinalis" EXACT LATIN [FMA:71168, FMA:TA] +synonym: "segmenta lumbalia medullae spinalis [1-5]" EXACT LATIN [FMA:71168, FMA:TA] +synonym: "spinal cord lumbar segment" EXACT [MA:0003083] +xref: BIRNLEX:1704 +xref: FMA:71168 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1677 +xref: http://en.wikipedia.org/wiki/Lumbar_spinal_cord +xref: http://linkedlifedata.com/resource/umls/id/C0581620 +xref: http://linkedlifedata.com/resource/umls/id/C0581621 +xref: http://linkedlifedata.com/resource/umls/id/C1278838 +xref: http://www.snomedbrowser.com/Codes/Details/180962006 +xref: MA:0003083 +xref: NCIT:C12895 +xref: UMLS:C0581620 {source="BIRNLEX:1704"} +xref: UMLS:C0581621 {source="ncithesaurus:Lumbar_Spinal_Cord"} +xref: UMLS:C1278838 {source="BIRNLEX:1704"} +is_a: UBERON:0005844 ! spinal cord segment +intersection_of: UBERON:0005844 ! spinal cord segment +intersection_of: part_of UBERON:0005462 ! lower back +relationship: part_of UBERON:0005462 ! lower back + +[Term] +id: UBERON:0002793 +name: dorsal longitudinal fasciculus of pons +def: "Part of dorsal longitudinal fasciculus located within the pons" [BIRNLEX:1707] +synonym: "dorsal longitudinal fasciculus of the pons" RELATED [NeuroNames:599] +synonym: "fasciculus longitudinalis dorsalis (pontis)" RELATED LATIN [NeuroNames:599] +xref: BAMS:dlfp +xref: BIRNLEX:1707 +xref: FMA:72492 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=599 {source="BIRNLEX:1707"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=599 +xref: http://linkedlifedata.com/resource/umls/id/C0262223 +xref: UMLS:C0262223 {source="BIRNLEX:1707"} +is_a: UBERON:0005838 {source="FMA"} ! fasciculus of brain +relationship: part_of UBERON:0000988 ! pons +relationship: part_of UBERON:0003045 {source="NIFSTD"} ! dorsal longitudinal fasciculus + +[Term] +id: UBERON:0002794 +name: medial longitudinal fasciculus of pons +def: "A medial longitudinal fasciculus that is part of a pons [Automatically generated definition]." [OBOL:automatic] +synonym: "fasciculus longitudinalis medialis (pontis)" RELATED LATIN [NeuroNames:600] +synonym: "medial longitudinal fasciculus of pons of varolius" EXACT [OBOL:automatic] +synonym: "medial longitudinal fasciculus of the pons" RELATED [NeuroNames:600] +synonym: "pons medial longitudinal fasciculus" EXACT [OBOL:automatic] +synonym: "pons of varolius medial longitudinal fasciculus" EXACT [OBOL:automatic] +xref: BAMS:mlfp +xref: BIRNLEX:1708 +xref: FMA:72493 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=600 {source="BIRNLEX:1708"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=600 +xref: http://linkedlifedata.com/resource/umls/id/C0228440 +xref: UMLS:C0228440 {source="BIRNLEX:1708"} +is_a: UBERON:0002309 ! medial longitudinal fasciculus +intersection_of: UBERON:0002309 ! medial longitudinal fasciculus +intersection_of: part_of UBERON:0000988 ! pons +relationship: part_of UBERON:0000988 ! pons + +[Term] +id: UBERON:0002795 +name: frontal pole +def: "Component of the frontal lobe. The rostral and caudal boundaries of the frontal pole are the superior frontal gyrus and the rostral division of the middle frontal gyrus respectively (Christine Fennama-Notestine)." [BIRNLEX:1716] +subset: uberon_slim +synonym: "frontal pole" EXACT [FMA:74885] +synonym: "frontal pole, cerebral cortex" RELATED [BAMS:FRP] +synonym: "polus frontalis" EXACT LATIN [NeuroNames:57] +xref: BAMS:FRP +xref: BAMS:FrP +xref: BAMS:frp +xref: BIRNLEX:1716 +xref: DHBA:146034888 +xref: FMA:74885 +xref: HBA:4888 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=57 {source="BIRNLEX:1716"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=57 +xref: http://linkedlifedata.com/resource/umls/id/C0149546 +xref: http://www.snomedbrowser.com/Codes/Details/314144002 +xref: MBA:184 +xref: UMLS:C0149546 {source="BIRNLEX:1716"} +is_a: UBERON:0009899 ! pole of cerebral hemisphere +intersection_of: UBERON:0009899 ! pole of cerebral hemisphere +intersection_of: part_of UBERON:0016525 ! frontal lobe +relationship: part_of UBERON:0016525 ! frontal lobe + +[Term] +id: UBERON:0002796 +name: motor root of trigeminal nerve +synonym: "dorsal motor root of v" RELATED [TAO:0000650] +synonym: "dorsal motor roots of V" RELATED PLURAL [ZFA:0000650] +synonym: "minor root of trigeminal nerve" RELATED [NeuroNames:608] +synonym: "motor branch of trigeminal nerve" EXACT [FMA:52612] +synonym: "motor root of N. V" RELATED [NeuroNames:608] +synonym: "motor root of nervus v" EXACT [] +synonym: "motor root of the trigeminal nerve" RELATED [NeuroNames:608] +synonym: "nervus trigemini radix motoria" RELATED LATIN [NeuroNames:608] +synonym: "nervus trigeminus, radix motoria" RELATED LATIN [NeuroNames:608] +synonym: "nervus trigeminus, radix motorius" RELATED LATIN [NeuroNames:608] +synonym: "portio minor nervi trigemini" RELATED LATIN [NeuroNames:608] +synonym: "portio minor of trigeminal nerve" RELATED LATIN [NeuroNames:608] +synonym: "radix motoria" RELATED LATIN [NeuroNames:608] +synonym: "radix motoria (Nervus trigeminus [V])" EXACT [FMA:52612] +synonym: "radix motoria nervus trigemini" EXACT LATIN [FMA:52612, FMA:TA] +xref: BAMS:m5 +xref: BAMS:mo5 +xref: BAMS:moV +xref: BAMS:mV +xref: BIRNLEX:1717 +xref: DHBA:12866 +xref: FMA:52612 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=608 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=608 {source="BIRNLEX:1717"} +xref: http://linkedlifedata.com/resource/umls/id/C0228707 +xref: http://www.snomedbrowser.com/Codes/Details/280189001 +xref: MBA:93 +xref: TAO:0000650 +xref: UMLS:C0228707 {source="BIRNLEX:1717"} +xref: ZFA:0000650 +is_a: UBERON:0004673 ! trigeminal nerve root +relationship: develops_from UBERON:0005239 {source="Wikipedia"} ! basal plate metencephalon + +[Term] +id: UBERON:0002797 +name: dorsal trigeminal tract +def: "The dorsal trigeminal tract (dorsal trigeminothalamic tract, or lemniscus) is a tract which receives signals from Meissner's corpuscles and Pacinian corpuscles. this tract arises from Principal trigeminal nucleus and terminates in the VPM nucleus of the thalamus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Dorsal_trigeminal_tract] +comment: This tract arises from Principal trigeminal nucleus and terminates in the ipsilateral VPM nucleus of the thalamus.[WP] +subset: uberon_slim +synonym: "dorsal ascending trigeminal tract" EXACT [FMA:72500] +synonym: "dorsal division of trigeminal lemniscus" EXACT [FMA:72500] +synonym: "dorsal secondary ascending tract of V" RELATED [NeuroNames:606] +synonym: "dorsal secondary ascending tract of v" EXACT [] +synonym: "dorsal secondary tract of v" EXACT [] +synonym: "dorsal trigeminal lemniscus" EXACT [FMA:72500] +synonym: "dorsal trigeminal pathway" EXACT [FMA:72500] +synonym: "dorsal trigemino-thalamic tract" RELATED [BAMS:tth] +synonym: "dorsal trigeminothalamic tract" EXACT [FMA:72500] +synonym: "dorsal trigmino-thalamic tract" RELATED [NeuroNames:606] +synonym: "posterior trigeminothalamic tract" EXACT [FMA:72500] +synonym: "reticulothalamic tract" EXACT [FMA:72500] +synonym: "tractus trigeminalis dorsalis" RELATED LATIN [NeuroNames:606] +synonym: "tractus trigemino-thalamicus dorsalis" RELATED LATIN [NeuroNames:606] +synonym: "tractus trigeminothalamicus posterior" EXACT LATIN [FMA:72500, FMA:TA] +synonym: "uncrossed dorsal trigeminothalamic tract" EXACT [FMA:72500] +xref: BAMS:d5 +xref: BAMS:tth +xref: BIRNLEX:1718 +xref: DHBA:12736 +xref: FMA:72500 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=606 {source="BIRNLEX:1718"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=606 +xref: http://en.wikipedia.org/wiki/Dorsal_trigeminal_tract +xref: http://linkedlifedata.com/resource/umls/id/C0175459 +xref: UMLS:C0175459 {source="BIRNLEX:1718"} +is_a: UBERON:0004171 ! trigeminothalamic tract +is_a: UBERON:0007702 ! tract of brain +relationship: part_of UBERON:0003023 {source="FMA", source="NIFSTD"} ! pontine tegmentum + +[Term] +id: UBERON:0002798 +name: spinothalamic tract of pons +def: "Part of spinothalamic tract that is in the pontine tegmentum" [BIRNLEX:1719] +synonym: "pons of varolius spinothalamic tract" EXACT [OBOL:automatic] +synonym: "pons of varolius spinothalamic tract of medulla" EXACT [OBOL:automatic] +synonym: "pons spinothalamic tract" EXACT [OBOL:automatic] +synonym: "pons spinothalamic tract of medulla" EXACT [OBOL:automatic] +synonym: "spinotectal pathway" RELATED [BAMS:stp] +synonym: "spinothalamic tract of medulla of pons" EXACT [OBOL:automatic] +synonym: "spinothalamic tract of medulla of pons of varolius" EXACT [OBOL:automatic] +synonym: "spinothalamic tract of pons of varolius" EXACT [OBOL:automatic] +synonym: "spinothalamic tract of the pons" RELATED [NeuroNames:611] +synonym: "tractus spinothalamicus (pontis)" RELATED LATIN [NeuroNames:611] +xref: BAMS:stp +xref: BIRNLEX:1719 +xref: FMA:72504 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=611 {source="BIRNLEX:1719"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=611 +xref: http://linkedlifedata.com/resource/umls/id/C0152380 +xref: http://www.snomedbrowser.com/Codes/Details/369026006 +xref: MBA:277 +xref: UMLS:C0152380 {source="BIRNLEX:1719"} +is_a: UBERON:0007702 {source="FMA"} ! tract of brain +relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum +relationship: part_of UBERON:0007703 ! spinothalamic tract + +[Term] +id: UBERON:0002799 +name: fronto-orbital sulcus +synonym: "fronto-orbital dimple" EXACT [FMA:83768] +synonym: "FROS" BROAD ABBREVIATION [BIRNLEX:1724, NIFSTD:NeuroNames_abbrevSource] +synonym: "orbito-frontal sulcus" EXACT [FMA:83768] +synonym: "orbitofrontal sulcus" EXACT [BM:Tel-Cx-OFS] +synonym: "sulcus fronto-orbitalis" RELATED LATIN [NeuroNames:77] +xref: BAMS:fros +xref: BIRNLEX:1724 +xref: BM:Tel-Cx-OFS +xref: FMA:83768 +xref: HBA:9362 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=77 {source="BIRNLEX:1724"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=77 +xref: http://linkedlifedata.com/resource/umls/id/C0262240 +xref: UMLS:C0262240 {source="BIRNLEX:1724"} +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus +is_a: UBERON:0014639 ! frontal sulcus +relationship: part_of UBERON:0004167 ! orbitofrontal cortex + +[Term] +id: UBERON:0002800 +name: spinal trigeminal tract of pons +synonym: "spinal trigeminal tract of the pons" RELATED [NeuroNames:614] +synonym: "tractus spinalis nervi trigemini (pontis)" RELATED LATIN [NeuroNames:614] +xref: BAMS:sp5p +xref: BIRNLEX:1725 +xref: FMA:72507 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=614 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=614 {source="BIRNLEX:1725"} +xref: http://linkedlifedata.com/resource/umls/id/C0228456 +xref: http://www.snomedbrowser.com/Codes/Details/369027002 +xref: UMLS:C0228456 {source="BIRNLEX:1725"} +is_a: UBERON:0014761 ! spinal trigeminal tract +relationship: part_of UBERON:0003023 {source="NIFSTD"} ! pontine tegmentum + +[Term] +id: UBERON:0002801 +name: stratum zonale of thalamus +def: "The thalamus consists chiefly of gray substance, but its upper surface is covered by a layer of white substance, named the stratum zonale." [http://en.wikipedia.org/wiki/Stratum_zonale_of_thalamus] +synonym: "neuraxis stratum" EXACT [FMA:83905] +synonym: "stratum zonale of the thalamus" RELATED [NeuroNames:374] +synonym: "stratum zonale thalami" EXACT [BIRNLEX:1727] +xref: BAMS:SZ +xref: BIRNLEX:1727 +xref: DHBA:12085 +xref: FMA:83905 +xref: HBA:265505326 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=374 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=374 {source="BIRNLEX:1727"} +xref: http://en.wikipedia.org/wiki/Stratum_zonale_of_thalamus +is_a: UBERON:0003931 ! diencephalic white matter +relationship: part_of UBERON:0001897 {source="NIFSTD"} ! dorsal plus ventral thalamus + +[Term] +id: UBERON:0002802 +name: left parietal lobe +def: "Parietal lobe of the left hemisphere of the brain" [BIRNLEX:1728] +xref: BIRNLEX:1728 +xref: FMA:72974 +xref: http://linkedlifedata.com/resource/umls/id/C1281960 +xref: http://www.snomedbrowser.com/Codes/Details/314147009 +xref: UMLS:C1281960 {source="BIRNLEX:1728"} +is_a: UBERON:0001872 ! parietal lobe +intersection_of: UBERON:0001872 ! parietal lobe +intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere +relationship: adjacent_to UBERON:0002921 ! longitudinal fissure +relationship: part_of UBERON:0002812 ! left cerebral hemisphere + +[Term] +id: UBERON:0002803 +name: right parietal lobe +def: "Parietal lobe of the right hemisphere of the brain" [BIRNLEX:1729] +xref: BIRNLEX:1729 +xref: FMA:72973 +xref: http://linkedlifedata.com/resource/umls/id/C1281959 +xref: http://www.snomedbrowser.com/Codes/Details/314146000 +xref: UMLS:C1281959 {source="BIRNLEX:1729"} +is_a: UBERON:0001872 ! parietal lobe +intersection_of: UBERON:0001872 ! parietal lobe +intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere +relationship: adjacent_to UBERON:0002921 ! longitudinal fissure +relationship: part_of UBERON:0002813 ! right cerebral hemisphere + +[Term] +id: UBERON:0002804 +name: left limbic lobe +def: "A limbic lobe that is part of a left cerebral hemisphere." [OBOL:automatic] +xref: BIRNLEX:1780 +xref: FMA:72981 +is_a: UBERON:0002600 ! limbic lobe +intersection_of: UBERON:0002600 ! limbic lobe +intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere +relationship: part_of UBERON:0002812 ! left cerebral hemisphere + +[Term] +id: UBERON:0002805 +name: right limbic lobe +def: "A limbic lobe that is part of a right cerebral hemisphere." [OBOL:automatic] +xref: BIRNLEX:1781 +xref: FMA:72980 +is_a: UBERON:0002600 ! limbic lobe +intersection_of: UBERON:0002600 ! limbic lobe +intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere +relationship: part_of UBERON:0002813 ! right cerebral hemisphere + +[Term] +id: UBERON:0002806 +name: left occipital lobe +def: "An occipital lobe that is part of a left cerebral hemisphere." [OBOL:automatic] +xref: BIRNLEX:1782 +xref: FMA:72976 +xref: http://linkedlifedata.com/resource/umls/id/C1281963 +xref: http://www.snomedbrowser.com/Codes/Details/314150007 +xref: UMLS:C1281963 {source="BIRNLEX:1782"} +is_a: UBERON:0002021 ! occipital lobe +intersection_of: UBERON:0002021 ! occipital lobe +intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere +relationship: adjacent_to UBERON:0002921 ! longitudinal fissure +relationship: part_of UBERON:0002812 ! left cerebral hemisphere + +[Term] +id: UBERON:0002807 +name: right occipital lobe +def: "An occipital lobe that is part of a right cerebral hemisphere." [OBOL:automatic] +xref: BIRNLEX:1783 +xref: FMA:72975 +xref: http://linkedlifedata.com/resource/umls/id/C1281962 +xref: http://www.snomedbrowser.com/Codes/Details/314149007 +xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rv9OFy5wpEbGdrcN5Y29ycA +xref: UMLS:C1281962 {source="BIRNLEX:1783"} +is_a: UBERON:0002021 ! occipital lobe +intersection_of: UBERON:0002021 ! occipital lobe +intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere +relationship: adjacent_to UBERON:0002921 ! longitudinal fissure +relationship: part_of UBERON:0002813 ! right cerebral hemisphere + +[Term] +id: UBERON:0002808 +name: left temporal lobe +def: "A temporal lobe that is part of a left cerebral hemisphere." [OBOL:automatic] +xref: BIRNLEX:1784 +xref: FMA:72972 +xref: http://linkedlifedata.com/resource/umls/id/C1281971 +xref: http://www.snomedbrowser.com/Codes/Details/314158000 +xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rwQLi-ZwpEbGdrcN5Y29ycA +xref: UMLS:C1281971 {source="BIRNLEX:1784"} +is_a: UBERON:0001871 ! temporal lobe +intersection_of: UBERON:0001871 ! temporal lobe +intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere +relationship: part_of UBERON:0002812 ! left cerebral hemisphere + +[Term] +id: UBERON:0002809 +name: right temporal lobe +def: "A temporal lobe that is part of a right cerebral hemisphere." [OBOL:automatic] +xref: BIRNLEX:1785 +xref: FMA:72971 +xref: http://linkedlifedata.com/resource/umls/id/C1281970 +xref: http://www.snomedbrowser.com/Codes/Details/314157005 +xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rwQLi-ZwpEbGdrcN5Y29ycA +xref: UMLS:C1281970 {source="BIRNLEX:1785"} +is_a: UBERON:0001871 ! temporal lobe +intersection_of: UBERON:0001871 ! temporal lobe +intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere +relationship: part_of UBERON:0002813 ! right cerebral hemisphere + +[Term] +id: UBERON:0002810 +name: right frontal lobe +def: "A frontal cortex that is part of a right cerebral hemisphere." [OBOL:automatic] +xref: BIRNLEX:1786 +xref: FMA:72969 +xref: http://linkedlifedata.com/resource/umls/id/C1281954 +xref: http://www.snomedbrowser.com/Codes/Details/314141005 +xref: UMLS:C1281954 {source="BIRNLEX:1786"} +is_a: UBERON:0001870 ! frontal cortex +intersection_of: UBERON:0001870 ! frontal cortex +intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere +relationship: adjacent_to UBERON:0002921 ! longitudinal fissure +relationship: part_of UBERON:0002813 ! right cerebral hemisphere + +[Term] +id: UBERON:0002811 +name: left frontal lobe +def: "A frontal cortex that is part of a left cerebral hemisphere." [OBOL:automatic] +xref: BIRNLEX:1787 +xref: FMA:72970 +xref: http://linkedlifedata.com/resource/umls/id/C1281955 +xref: http://www.snomedbrowser.com/Codes/Details/314142003 +xref: UMLS:C1281955 {source="BIRNLEX:1787"} +is_a: UBERON:0001870 ! frontal cortex +intersection_of: UBERON:0001870 ! frontal cortex +intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere +relationship: adjacent_to UBERON:0002921 ! longitudinal fissure +relationship: part_of UBERON:0002812 ! left cerebral hemisphere + +[Term] +id: UBERON:0002812 +name: left cerebral hemisphere +def: "A cerebral hemisphere that is in the left side of a brain." [OBOL:automatic] +synonym: "left hemisphere" EXACT [BIRNLEX:1795] +xref: BIRNLEX:1795 +xref: FMA:61819 +xref: http://linkedlifedata.com/resource/umls/id/C0228176 +xref: http://www.snomedbrowser.com/Codes/Details/362323007 +xref: NCIT:C32955 +xref: UMLS:C0228176 {source="ncithesaurus:Left_Cerebral_Hemisphere"} +is_a: UBERON:0001869 ! cerebral hemisphere +intersection_of: UBERON:0001869 ! cerebral hemisphere +intersection_of: in_left_side_of UBERON:0000955 ! brain +relationship: in_left_side_of UBERON:0000955 ! brain + +[Term] +id: UBERON:0002813 +name: right cerebral hemisphere +def: "A cerebral hemisphere that is in the right side of a brain." [OBOL:automatic] +synonym: "right hemisphere" EXACT [BIRNLEX:1797] +xref: BIRNLEX:1797 +xref: FMA:67292 +xref: http://linkedlifedata.com/resource/umls/id/C0228175 +xref: http://www.snomedbrowser.com/Codes/Details/362322002 +xref: NCIT:C33472 +xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvigx5ZwpEbGdrcN5Y29ycA +xref: UMLS:C0228175 {source="ncithesaurus:Right_Cerebral_Hemisphere"} +is_a: UBERON:0001869 ! cerebral hemisphere +intersection_of: UBERON:0001869 ! cerebral hemisphere +intersection_of: in_right_side_of UBERON:0000955 ! brain +relationship: in_right_side_of UBERON:0000955 ! brain + +[Term] +id: UBERON:0002814 +name: posterior superior fissure of cerebellum +synonym: "fissura post clivalis" EXACT LATIN [FMA:83733, FMA:TA] +synonym: "post-clival fissure" EXACT [FMA:83733] +synonym: "postclival fissure" EXACT [FMA:83733] +synonym: "posterior superior fissure" RELATED [NLXANAT:20081254] +synonym: "posterior superior fissure of cerebellum" EXACT [FMA:83733] +synonym: "postlunate fissure" EXACT [FMA:83733] +synonym: "superior posterior cerebellar fissure" EXACT [] +xref: BAMS:psf +xref: FMA:83733 +xref: HBA:9411 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=662 +xref: http://www.snomedbrowser.com/Codes/Details/314170001 +xref: MBA:1112 +xref: NIFSTD_RETIRED:birnlex_20081254 +xref: NLXANAT:20081254 +is_a: UBERON:0003980 ! cerebellum fissure + +[Term] +id: UBERON:0002815 +name: horizontal fissure of cerebellum +def: "Fissure between cerebellar hemispheric lobules VIIA and VIIBi." [NLXANAT:20081255] +synonym: "fissura horizontalis" RELATED LATIN [http://en.wikipedia.org/wiki/Horizontal_fissure_of_cerebellum] +synonym: "fissura horizontalis cerebelli" EXACT LATIN [FMA:75135, FMA:TA] +synonym: "fissura intercruralis" EXACT LATIN [FMA:75135, FMA:TA] +synonym: "fissura intercruralis cerebelli" EXACT LATIN [FMA:75135, FMA:TA] +synonym: "great horizontal fissure" EXACT [FMA:75135] +synonym: "horizontal fissure" BROAD [] +synonym: "horizontal sulcus" EXACT [] +synonym: "intercrural fissure of cerebellum" EXACT [FMA:75135] +xref: BAMS:hzf +xref: FMA:75135 +xref: HBA:9412 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=661 +xref: http://en.wikipedia.org/wiki/Horizontal_fissure_of_cerebellum +xref: http://www.snomedbrowser.com/Codes/Details/314173004 +xref: NIFSTD_RETIRED:birnlex_20081255 +xref: NLXANAT:20081255 +is_a: UBERON:0003980 ! cerebellum fissure + +[Term] +id: UBERON:0002816 +name: prepyramidal fissure of cerebellum +def: "Fissure between cerebellar lobules VIIBii and VIII." [NLXANAT:20081257] +synonym: "fissura inferior anterior" EXACT LATIN [FMA:75138, FMA:TA] +synonym: "fissura parafloccularis" EXACT LATIN [FMA:75138, FMA:TA] +synonym: "fissura praepyramidalis" EXACT LATIN [FMA:75138, FMA:TA] +synonym: "fissura prebiventralis cerebelli" EXACT LATIN [FMA:75138, FMA:TA] +synonym: "fissura prepyramidalis" EXACT LATIN [FMA:75138, FMA:TA] +synonym: "fissura prepyramidalis cerebelli" EXACT LATIN [FMA:75138, FMA:TA] +synonym: "prebiventral fissure of cerebellum" EXACT [FMA:75138] +synonym: "prepyramidal fissure" RELATED [NLXANAT:20081257] +synonym: "prepyramidal fissure of cerebellum" EXACT [FMA:75138] +synonym: "prepyramidal sulcus" EXACT [FMA:75138] +xref: BAMS:ppf +xref: BAMS:ppyf +xref: FMA:75138 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=663 +xref: http://www.snomedbrowser.com/Codes/Details/314171002 +xref: MBA:1119 +xref: NLXANAT:20081257 +is_a: UBERON:0003980 ! cerebellum fissure + +[Term] +id: UBERON:0002817 +name: secondary fissure of cerebellum +def: "Fissure between cerebellar lobules VIII and IX." [NLXANAT:20081258] +synonym: "fissura postpyramidalis cerebelli" EXACT LATIN [FMA:84043, FMA:TA] +synonym: "post-pyramidal fissure of cerebellum" EXACT [FMA:84043] +synonym: "postpyramidal fissure" EXACT [FMA:84043] +synonym: "secondary fissure" BROAD [FMA:84043] +synonym: "secondary fissure of cerebellum" EXACT [FMA:84043] +xref: BAMS:scf +xref: BAMS:sec +xref: BAMS:sf +xref: FMA:84043 +xref: HBA:9416 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=644 +xref: http://www.snomedbrowser.com/Codes/Details/314169002 +xref: MBA:3 +xref: NIFSTD_RETIRED:birnlex_20081258 +xref: NLXANAT:20081258 +is_a: UBERON:0003980 ! cerebellum fissure + +[Term] +id: UBERON:0002818 +name: posterolateral fissure of cerebellum +def: "Fissure between cerebellar lobules IX and X." [NLXANAT:20081259] +synonym: "dorsolateral fissure of cerebellum" EXACT [FMA:83730] +synonym: "posterolateral fissure" BROAD [] +synonym: "posterolateral fissure of cerebellum" EXACT [FMA:83730] +synonym: "prenodular fissure" EXACT [FMA:83730] +synonym: "prenodular sulcus" EXACT [FMA:83730] +synonym: "uvulonodular fissure" EXACT [FMA:83730] +xref: BAMS:plf +xref: FMA:83730 +xref: HBA:9417 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=649 +xref: http://www.snomedbrowser.com/Codes/Details/314172009 +xref: MBA:11 +xref: NIFSTD_RETIRED:birnlex_20081259 +xref: NLXANAT:20081259 +is_a: UBERON:0003980 ! cerebellum fissure + +[Term] +id: UBERON:0002819 +name: apex of cochlea +def: "The cupula is a structure in the vestibular system, sensing proprioception. The cupula is located within the ampullae of each of the three semicircular canals. As fluid rushes by the cupula, hair cells within it sense rotational acceleration, and transmit the corresponding signal to the brain through the vestibulocochlear nerve (CN VIII) In their natural orientation within the head, the cupulae are located on the medial aspect of the semicircular canals. In this orientation, the kinocilia rest on the posterior aspect of the cupula. [WP,unvetted]." [http://en.wikipedia.org/wiki/Apex_of_cochlea] +subset: uberon_slim +synonym: "apex of cochlear canal" EXACT [BIRNLEX:2555] +synonym: "apex of the cochlear canal" EXACT [BIRNLEX:2555] +synonym: "cochlea apex" EXACT [FMA:75641] +synonym: "cupula of cochlea" EXACT [FMA:75641] +synonym: "cupula of the cochlear canal" EXACT [BIRNLEX:2557] +xref: BIRNLEX:2523 +xref: BIRNLEX:2555 +xref: BIRNLEX:2557 +xref: FMA:75641 +xref: http://en.wikipedia.org/wiki/Apex_of_cochlea +xref: http://linkedlifedata.com/resource/umls/id/C0458764 +xref: http://linkedlifedata.com/resource/umls/id/C0458765 +xref: http://linkedlifedata.com/resource/umls/id/C1184827 +xref: http://www.snomedbrowser.com/Codes/Details/279776002 +xref: http://www.snomedbrowser.com/Codes/Details/279777006 +xref: UMLS:C0458764 {source="BIRNLEX:2557"} +xref: UMLS:C0458765 {source="BIRNLEX:2555"} +xref: UMLS:C1184827 {source="BIRNLEX:2523"} +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0006106 ! cochlear canal + +[Term] +id: UBERON:0002820 +name: zona arcuata of basilar membrane of cochlea +alt_id: UBERON:0002821 +alt_id: UBERON:0031464 +def: "The inner part of the basilar membrane of the cochlea that supports the spiral organ of Corti." [http://en.wikipedia.org/wiki/Inner_tunnel, https://github.com/obophenotype/uberon/issues/1357] +synonym: "arcuate zone of basilar membrane" EXACT [] +synonym: "arcuate zone of organ of corti" EXACT [] +synonym: "basilar membrane of cochlea, zona arcuata" EXACT [] +synonym: "inner tunnel" BROAD [http://en.wikipedia.org/wiki/Inner_tunnel] +synonym: "zona arcuata" BROAD [http://en.wikipedia.org/wiki/Inner_tunnel] +xref: BIRNLEX:2528 +xref: FMA:75709 +xref: http://linkedlifedata.com/resource/umls/id/C1184862 +xref: http://www.snomedbrowser.com/Codes/Details/368961005 +xref: Inner:tunnel +xref: UMLS:C1184862 {source="BIRNLEX:2528"} +is_a: UBERON:0036250 ! zone of basilar membrane of cochlea + +[Term] +id: UBERON:0002822 +name: macula lutea proper +def: "The part of the macula lutea that excludes the fovea." [http://orcid.org/0000-0002-6601-2165] +xref: BIRNLEX:2542 +xref: FMA:58671 +xref: http://linkedlifedata.com/resource/umls/id/C0934637 +xref: UMLS:C0934637 {source="BIRNLEX:2542"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0000053 ! macula lutea + +[Term] +id: UBERON:0002823 +name: clivus of fovea centralis +comment: NIF differs from FMA +synonym: "clivus of macula lutea" EXACT [BIRNLEX:2544] +synonym: "fovea centralis clivus" EXACT [FMA:58674] +xref: BIRNLEX:2544 +xref: FMA:58674 +xref: http://linkedlifedata.com/resource/umls/id/C0929757 +xref: http://linkedlifedata.com/resource/umls/id/C0929760 +xref: UMLS:C0929757 {source="BIRNLEX:2544"} +xref: UMLS:C0929760 {source="BIRNLEX:2544"} +is_a: UBERON:0000466 ! immaterial anatomical entity +relationship: part_of UBERON:0001786 ! fovea centralis + +[Term] +id: UBERON:0002824 +name: vestibular ganglion +def: "The ganglion of the vestibular nerve. It contains the cell bodies of the bipolar primary afferent neurons whose peripheral processes form synaptic contact with hair cells of the vestibular sensory end organs[WP,unvetted]. Distributed to the maculae of the utricle and saccule and to the ampullary crests of the semicircular ducts. The vestibular fibers arise in bipolar cells in the vestibular ganglion in the internal acoustic meatus." [http://en.wikipedia.org/wiki/Scarpa%27s_ganglion, http://www.dartmouth.edu/~humananatomy/part_8/chapter_44.html] +subset: pheno_slim +subset: uberon_slim +synonym: "nucleus nervi oculomotorii, pars medialis" RELATED LATIN [NeuroNames:495] +synonym: "Scarpa's ganglion" EXACT [FMA:53435] +synonym: "vestibular part of vestibulocochlear ganglion" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "vestibulocochlear ganglion vestibular component" RELATED [EMAPA:17573] +synonym: "vestibulocochlear VIII ganglion vestibular component" EXACT [MA:0001086] +xref: BAMS:GvVIII +xref: BIRNLEX:2549 +xref: EMAPA:17573 +xref: FMA:53435 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=495 {source="BIRNLEX:2549"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=495 +xref: http://linkedlifedata.com/resource/umls/id/C0036286 +xref: http://linkedlifedata.com/resource/umls/id/C0446706 +xref: http://www.snomedbrowser.com/Codes/Details/244450009 +xref: MA:0001086 +xref: NCIT:C33870 +xref: RETIRED_EHDAA2:0002199 +xref: Scarpa%27s:ganglion +xref: UMLS:C0036286 {source="BIRNLEX:2549"} +xref: UMLS:C0036286 {source="ncithesaurus:Vestibular_Ganglion"} +xref: UMLS:C0446706 {source="BIRNLEX:2549"} +xref: VHOG:0000682 +is_a: UBERON:0001714 ! cranial ganglion +is_a: UBERON:0001800 {source="ncithesaurus"} ! sensory ganglion +is_a: UBERON:0003338 ! ganglion of peripheral nervous system +is_a: UBERON:0006585 ! vestibular organ +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0001714 ! cranial ganglion +intersection_of: extends_fibers_into UBERON:0003723 ! vestibular nerve +relationship: extends_fibers_into UBERON:0003723 ! vestibular nerve +relationship: part_of UBERON:0001862 ! vestibular labyrinth +relationship: part_of UBERON:0002827 ! vestibulocochlear ganglion + +[Term] +id: UBERON:0002825 +name: superior part of vestibular ganglion +def: "The part of the vestibular ganglion that receives fibers from the maculae of the utricle and the sacculae and the ampullae of the anterior and lateral semicircular ducts." [ISBN:0-683-40008-8, MP:0000028] +subset: pheno_slim +synonym: "pars superior ganglionis vestibularis" EXACT LATIN [FMA:77531, FMA:TA] +synonym: "pars superior vestibularis" RELATED [MA:0002778] +synonym: "vestibular ganglion superior part" EXACT [MA:0002778] +xref: BIRNLEX:2551 +xref: FMA:77531 +xref: http://linkedlifedata.com/resource/umls/id/C1186166 +xref: MA:0002778 +xref: UMLS:C1186166 {source="BIRNLEX:2551"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: contributes_to_morphology_of UBERON:0002824 ! vestibular ganglion +relationship: part_of UBERON:0002824 ! vestibular ganglion + +[Term] +id: UBERON:0002826 +name: inferior part of vestibular ganglion +synonym: "pars inferior ganglionis vestibularis" EXACT LATIN [FMA:77532, FMA:TA] +synonym: "vestibular ganglion inferior part" EXACT [MA:0002779] +xref: BIRNLEX:2552 +xref: FMA:77532 +xref: http://linkedlifedata.com/resource/umls/id/C1186167 +xref: MA:0002779 +xref: UMLS:C1186167 {source="BIRNLEX:2552"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0002824 ! vestibular ganglion + +[Term] +id: UBERON:0002827 +name: vestibulocochlear ganglion +def: "the group of neuron cell bodies associated with the eighth cranial nerve during embryogenesis; splits in later development to form the cochlear and vestibular ganglia" [MGI:smb, MP:0003703] +subset: efo_slim +subset: pheno_slim +subset: vertebrate_core +synonym: "acoustic ganglion" RELATED [VHOG:0000696] +synonym: "acoustic ganglion VIII" EXACT [EMAPA:16982] +synonym: "acoustico-vestibular VIII ganglion" EXACT [EHDAA2:0002196] +synonym: "auditory ganglion" EXACT [ZFA:0000588] +synonym: "auditory ganglion" RELATED [BIRNLEX:2564] +synonym: "ganglion VIII" EXACT [] +synonym: "gVIII" EXACT [ZFA:0000588] +synonym: "nucleus nervi oculomotorii ventrolateralis" RELATED LATIN [NeuroNames:496] +synonym: "nucleus nervi oculomotorii, pars ventralis" RELATED LATIN [NeuroNames:496] +synonym: "SAG" BROAD [ZFA:0000588] +synonym: "statoacoustic (VIII) ganglion" EXACT [ZFA:0000588] +synonym: "statoacoustic ganglia" EXACT [ZFA:0000588] +synonym: "statoacoustic ganglion" EXACT [XAO:0004142] +synonym: "statoacoustic VIII ganglion" RELATED [VHOG:0000696] +synonym: "vestibulocochlear ganglia" RELATED PLURAL [XAO:0004142] +synonym: "vestibulocochlear VIII ganglion" EXACT [MA:0001084] +xref: BIRNLEX:2564 +xref: EFO:0003543 +xref: EHDAA2:0002196 +xref: EHDAA:5569 +xref: EHDAA:6653 +xref: EMAPA:16982 +xref: EMAPA:17571 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=496 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=496 {source="BIRNLEX:2564"} +xref: http://linkedlifedata.com/resource/umls/id/C0037959 +xref: MA:0001084 +xref: TAO:0000588 +xref: UMLS:C0037959 {source="BIRNLEX:2564"} +xref: VHOG:0000696 +xref: XAO:0004142 +xref: ZFA:0000588 +is_a: UBERON:0001714 {source="ZFA"} ! cranial ganglion +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: develops_from UBERON:0003249 {source="NCBIBook:NBK53175"} ! epithelium of otic placode +relationship: develops_from UBERON:0012175 {source="EHDAA2"} ! acoustico-facial VII-VIII ganglion complex +relationship: part_of UBERON:0002105 {source="ZFA"} ! vestibulo-auditory system + +[Term] +id: UBERON:0002828 +name: ventral cochlear nucleus +def: "The ventral cochlear nucleus (or anterior, or accessory), placed between the two divisions of the cochlear nerve, is on the ventral aspect of the inferior peduncle. Composed of several regions of distinct cell types, this nucleus serves primarily as a relay station for ascending auditory information. Bushy cells in the anterior ventral cochlear nucleus (AVCN), which receive end bulbs of held from auditory nerve fibers, project to the superior olivary complex through the trapezoid body and intermediate acoustic stria. Other cell types project to the lateral lemniscus and the inferior colliculus directly. [WP,unvetted]." [http://en.wikipedia.org/wiki/Ventral_cochlear_nucleus] +subset: uberon_slim +synonym: "accessory cochlear nucleus" RELATED [NeuroNames:722] +synonym: "anterior cochlear nucleus" EXACT [FMA:54621] +synonym: "c1281209" EXACT [BIRNLEX:2567] +synonym: "nucleus acustici accessorici" RELATED LATIN [NeuroNames:722] +synonym: "nucleus cochlearis anterior" RELATED LATIN [NeuroNames:722] +synonym: "nucleus cochlearis ventralis" RELATED LATIN [NeuroNames:722] +synonym: "VCo" BROAD ABBREVIATION [BIRNLEX:2567, NIFSTD:NeuroNames_abbrevSource] +synonym: "ventral cochlear nuclei" RELATED [NeuroNames:722] +synonym: "ventral cochlear nucleus" EXACT [FMA:54621] +synonym: "ventral coclear nucleus" RELATED [BAMS:VCO] +synonym: "ventral division of cochlear nucleus" RELATED [NeuroNames:722] +xref: BAMS:VC +xref: BAMS:VCO +xref: BIRNLEX:2567 +xref: BM:CV +xref: DHBA:12439 +xref: FMA:54621 +xref: HBA:9531 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=722 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=722 {source="BIRNLEX:2567"} +xref: http://en.wikipedia.org/wiki/Ventral_cochlear_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0175500 +xref: http://www.snomedbrowser.com/Codes/Details/280178008 +xref: MBA:101 +xref: UMLS:C0175500 {source="BIRNLEX:2567"} +is_a: UBERON:0001720 ! cochlear nucleus +disjoint_from: UBERON:0002829 {source="lexical"} ! dorsal cochlear nucleus + +[Term] +id: UBERON:0002829 +name: dorsal cochlear nucleus +def: "The dorsal cochlear nucleus (DCN, also known as the 'tuberculum acousticum'), is a cortex-like structure on the dorso-lateral surface of the brainstem. Along with the ventral cochlear nucleus, it forms the cochlear nucleus, where all auditory nerve fibers from the cochlea form their first synapses. [WP,unvetted]." [http://en.wikipedia.org/wiki/Dorsal_cochlear_nucleus] +subset: uberon_slim +synonym: "DCo" BROAD ABBREVIATION [BIRNLEX:2569, NIFSTD:NeuroNames_abbrevSource] +synonym: "dorsal cochlear nucleus" EXACT [FMA:54624] +synonym: "dorsal coclear nucleus" RELATED [BAMS:DCO] +synonym: "dorsal division of cochlear nucleus" EXACT [FMA:54624] +synonym: "nucleus cochlearis dorsalis" RELATED LATIN [NeuroNames:721] +synonym: "nucleus cochlearis posterior" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsal_cochlear_nucleus] +synonym: "posterior cochlear nucleus" EXACT [FMA:54624] +synonym: "tuberculum acousticum" EXACT [] +xref: BAMS:DC +xref: BAMS:DCO +xref: BAMS:DCo +xref: BIRNLEX:2569 +xref: BM:Me-CD +xref: DHBA:12438 +xref: EMAPA:35289 +xref: FMA:54624 +xref: HBA:9530 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=721 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=721 {source="BIRNLEX:2569"} +xref: http://en.wikipedia.org/wiki/Dorsal_cochlear_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0175499 +xref: http://linkedlifedata.com/resource/umls/id/C1281210 +xref: http://www.snomedbrowser.com/Codes/Details/280179000 +xref: MBA:96 +xref: NCIT:C32471 +xref: UMLS:C0175499 {source="ncithesaurus:Dorsal_Cochlear_Nucleus"} +xref: UMLS:C0175499 {source="BIRNLEX:2569"} +xref: UMLS:C1281210 {source="BIRNLEX:2569"} +is_a: UBERON:0001720 ! cochlear nucleus + +[Term] +id: UBERON:0002830 +name: anteroventral cochlear nucleus +synonym: "anterior part of anterior cochlear nucleus" EXACT [BIRNLEX:2572] +synonym: "anterior part of the ventral cochlear nucleus" RELATED [NeuroNames:723] +synonym: "anterior ventral cochlear nucleus" RELATED [NeuroNames:723] +synonym: "anteroventral auditory nucleus" EXACT [FMA:72571] +synonym: "AVCo" BROAD ABBREVIATION [BIRNLEX:2572, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus cochlearis anteroventralis" RELATED LATIN [NeuroNames:723] +synonym: "nucleus magnocellularis" EXACT [BIRNLEX:2572] +synonym: "ventral cochlear nucleus, anterior part" RELATED [NeuroNames:723] +synonym: "ventral coclear nucleus anterior part" RELATED [NeuroNames:723] +xref: BAMS:AVCo +xref: BIRNLEX:2572 +xref: DHBA:12440 +xref: FMA:72571 +xref: HBA:9532 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=723 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=723 {source="BIRNLEX:2572"} +xref: http://linkedlifedata.com/resource/umls/id/C0926557 +xref: UMLS:C0926557 {source="BIRNLEX:2572"} +is_a: UBERON:0001720 ! cochlear nucleus +disjoint_from: UBERON:0002831 {source="lexical"} ! posteroventral cochlear nucleus +relationship: part_of UBERON:0002828 {source="NIFSTD"} ! ventral cochlear nucleus + +[Term] +id: UBERON:0002831 +name: posteroventral cochlear nucleus +synonym: "nucleus cochlearis posteroventralis" RELATED LATIN [NeuroNames:724] +synonym: "posterior part of anterior cochlear nucleus" EXACT [BIRNLEX:2573] +synonym: "posterior part of the ventral cochlear nucleus" RELATED [NeuroNames:724] +synonym: "posterior ventral cochlear nucleus" RELATED [NeuroNames:724] +synonym: "PVCo" BROAD ABBREVIATION [BIRNLEX:2573, NIFSTD:NeuroNames_abbrevSource] +synonym: "ventral cochlear nucleus, posterior part" RELATED [NeuroNames:724] +synonym: "ventral coclear nucleus posterior part" RELATED [NeuroNames:724] +xref: BAMS:PVCo +xref: BIRNLEX:2573 +xref: DHBA:12441 +xref: FMA:72572 +xref: HBA:9533 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=724 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=724 {source="BIRNLEX:2573"} +xref: http://linkedlifedata.com/resource/umls/id/C0926558 +xref: UMLS:C0926558 {source="BIRNLEX:2573"} +is_a: UBERON:0001720 ! cochlear nucleus +relationship: part_of UBERON:0002828 {source="NIFSTD"} ! ventral cochlear nucleus + +[Term] +id: UBERON:0002832 +name: ventral nucleus of trapezoid body +def: "A small nucleus of the periolivary complex located laterally to the MNTB, and ventral to the MSO." [http://en.wikipedia.org/wiki/Superior_olivary_complex#Ventral_nucleus_of_the_trapezoid_body_.28VNTB.29] +synonym: "anterior nucleus of trapezoid body" EXACT [FMA:72477] +synonym: "nucleus anterior corporis trapezoidei" EXACT LATIN [FMA:72477, FMA:TA] +synonym: "nucleus ventralis corporis trapezoidei" EXACT LATIN [NeuroNames:1283] +synonym: "ventral trapezoid nucleus" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "VNTB" EXACT ABBREVIATION [] +xref: BIRNLEX:2576 +xref: DHBA:12461 +xref: FMA:72477 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1283 +xref: http://linkedlifedata.com/resource/umls/id/C0228437 +xref: http://linkedlifedata.com/resource/umls/id/C1289449 +xref: http://www.snomedbrowser.com/Codes/Details/369020000 +xref: UMLS:C0228437 {source="BIRNLEX:2576"} +xref: UMLS:C1289449 {source="BIRNLEX:2576"} +is_a: UBERON:0007633 ! nucleus of trapezoid body +relationship: part_of UBERON:0002971 {source="Wikipedia"} ! periolivary nucleus +relationship: ventral_to UBERON:0002782 ! medial superior olivary nucleus + +[Term] +id: UBERON:0002833 +name: medial nucleus of trapezoid body +def: "Nucleus in the pontine tegmentum of most mammals that receives projections from the ventral cochlear nucleus via the large specialized synapse, the Calyx of Held. It is not clear whether a well defined nucleus is present in humans, although humans may possess scattered cells with similar input." [BIRNLEX:2595] +synonym: "MNTB" EXACT ABBREVIATION [] +xref: BIRNLEX:2595 +xref: DHBA:12460 +xref: FMA:75732 +is_a: UBERON:0007633 ! nucleus of trapezoid body +disjoint_from: UBERON:0016843 {source="lexical"} ! lateral nucleus of trapezoid body +relationship: part_of UBERON:0022434 {source="Wikipedia"} ! primary superior olive + +[Term] +id: UBERON:0002834 +name: cervical dorsal root ganglion +synonym: "cervical dorsal root ganglion" EXACT [FMA:6005] +synonym: "cervical spinal ganglion" EXACT [FMA:6005] +xref: BIRNLEX:2599 +xref: FMA:6005 +xref: http://linkedlifedata.com/resource/umls/id/C0457466 +xref: http://www.snomedbrowser.com/Codes/Details/278325008 +xref: UMLS:C0457466 {source="BIRNLEX:2599"} +is_a: UBERON:0000044 ! dorsal root ganglion +intersection_of: UBERON:0000044 ! dorsal root ganglion +intersection_of: extends_fibers_into UBERON:0009632 ! root of cervical nerve +relationship: extends_fibers_into UBERON:0009632 ! root of cervical nerve + +[Term] +id: UBERON:0002835 +name: thoracic dorsal root ganglion +def: "A dorsal root ganglion that is part of a thorax [Automatically generated definition]." [OBOL:automatic] +synonym: "dorsal root ganglion of thorax" EXACT [OBOL:automatic] +synonym: "ganglion of dorsal root of thorax" EXACT [OBOL:automatic] +synonym: "ganglion spinalis of thorax" EXACT [OBOL:automatic] +synonym: "thoracic dorsal root ganglion" EXACT [FMA:6006] +synonym: "thoracic spinal ganglion" EXACT [FMA:6006] +synonym: "thorax dorsal root ganglion" EXACT [OBOL:automatic] +synonym: "thorax ganglion of dorsal root" EXACT [OBOL:automatic] +synonym: "thorax ganglion spinalis" EXACT [OBOL:automatic] +xref: BIRNLEX:2600 +xref: FMA:6006 +xref: http://linkedlifedata.com/resource/umls/id/C0457467 +xref: http://www.snomedbrowser.com/Codes/Details/278326009 +xref: UMLS:C0457467 {source="BIRNLEX:2600"} +is_a: UBERON:0000044 ! dorsal root ganglion +is_a: UBERON:0000961 ! thoracic ganglion +intersection_of: UBERON:0000044 ! dorsal root ganglion +intersection_of: extends_fibers_into UBERON:0009630 ! root of thoracic nerve +relationship: extends_fibers_into UBERON:0009630 ! root of thoracic nerve + +[Term] +id: UBERON:0002836 +name: lumbar dorsal root ganglion +def: "The group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the lumbar vertebrae." [MP:0006404] +subset: pheno_slim +synonym: "lumbar dorsal root ganglion" EXACT [FMA:6007] +synonym: "lumbar spinal ganglion" EXACT [FMA:6007] +xref: BIRNLEX:2601 +xref: FMA:6007 +xref: http://linkedlifedata.com/resource/umls/id/C0457468 +xref: http://www.snomedbrowser.com/Codes/Details/278327000 +xref: UMLS:C0457468 {source="BIRNLEX:2601"} +is_a: UBERON:0000044 ! dorsal root ganglion +intersection_of: UBERON:0000044 ! dorsal root ganglion +intersection_of: extends_fibers_into UBERON:0009631 ! root of lumbar spinal nerve +relationship: extends_fibers_into UBERON:0009631 ! root of lumbar spinal nerve + +[Term] +id: UBERON:0002837 +name: sacral dorsal root ganglion +synonym: "sacral dorsal root ganglion" EXACT [FMA:6008] +synonym: "sacral spinal ganglion" EXACT [FMA:6008] +xref: BIRNLEX:2602 +xref: FMA:6008 +xref: http://linkedlifedata.com/resource/umls/id/C0457469 +xref: http://www.snomedbrowser.com/Codes/Details/278328005 +xref: UMLS:C0457469 {source="BIRNLEX:2602"} +is_a: UBERON:0000044 ! dorsal root ganglion +intersection_of: UBERON:0000044 ! dorsal root ganglion +intersection_of: extends_fibers_into UBERON:0009633 ! root of sacral nerve +relationship: extends_fibers_into UBERON:0009633 ! root of sacral nerve + +[Term] +id: UBERON:0002838 +name: first cervical dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "first cervical dorsal root ganglion" EXACT [FMA:6010] +synonym: "first cervical spinal ganglion" EXACT [FMA:6010] +xref: BIRNLEX:2603 +xref: EMAPA:25144 +xref: FMA:6010 +xref: http://linkedlifedata.com/resource/umls/id/C0501468 +xref: UMLS:C0501468 {source="BIRNLEX:2603"} +is_a: UBERON:0002834 ! cervical dorsal root ganglion + +[Term] +id: UBERON:0002839 +name: second cervical dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "C2 dorsal root ganglion" EXACT [EMAPA:25155] +synonym: "second cervical dorsal root ganglion" EXACT [FMA:6315] +synonym: "second cervical spinal ganglion" EXACT [FMA:6315] +xref: BIRNLEX:2604 +xref: EMAPA:25155 +xref: FMA:6315 +xref: http://linkedlifedata.com/resource/umls/id/C0501693 +xref: UMLS:C0501693 {source="BIRNLEX:2604"} +is_a: UBERON:0002834 ! cervical dorsal root ganglion + +[Term] +id: UBERON:0002840 +name: third cervical dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "C3 dorsal root ganglion" EXACT [EMAPA:25156] +synonym: "third cervical dorsal root ganglion" EXACT [FMA:6316] +synonym: "third cervical spinal ganglion" EXACT [FMA:6316] +xref: BIRNLEX:2605 +xref: EMAPA:25156 +xref: FMA:6316 +xref: http://linkedlifedata.com/resource/umls/id/C0501694 +xref: UMLS:C0501694 {source="BIRNLEX:2605"} +is_a: UBERON:0002834 ! cervical dorsal root ganglion + +[Term] +id: UBERON:0002841 +name: fourth cervical dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "C4 dorsal root ganglion" EXACT [EMAPA:25157] +synonym: "fourth cervical dorsal root ganglion" EXACT [FMA:6317] +synonym: "fourth cervical spinal ganglion" EXACT [FMA:6317] +xref: BIRNLEX:2606 +xref: EMAPA:25157 +xref: FMA:6317 +xref: http://linkedlifedata.com/resource/umls/id/C0501695 +xref: UMLS:C0501695 {source="BIRNLEX:2606"} +is_a: UBERON:0002834 ! cervical dorsal root ganglion + +[Term] +id: UBERON:0002842 +name: fifth cervical dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "C5 dorsal root ganglion" EXACT [EMAPA:25158] +synonym: "fifth cervical dorsal root ganglion" EXACT [FMA:6318] +synonym: "fifth cervical spinal ganglion" EXACT [FMA:6318] +xref: BIRNLEX:2607 +xref: EMAPA:25158 +xref: FMA:6318 +xref: http://linkedlifedata.com/resource/umls/id/C0501696 +xref: UMLS:C0501696 {source="BIRNLEX:2607"} +is_a: UBERON:0002834 ! cervical dorsal root ganglion + +[Term] +id: UBERON:0002843 +name: seventh cervical dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "C7 dorsal root ganglion" EXACT [EMAPA:25160] +synonym: "seventh cervical dorsal root ganglion" EXACT [FMA:6360] +synonym: "seventh cervical spinal ganglion" EXACT [FMA:6360] +xref: BIRNLEX:2609 +xref: EMAPA:25160 +xref: FMA:6360 +xref: http://linkedlifedata.com/resource/umls/id/C0501737 +xref: UMLS:C0501737 {source="BIRNLEX:2609"} +is_a: UBERON:0002834 ! cervical dorsal root ganglion + +[Term] +id: UBERON:0002844 +name: eighth cervical dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "eighth cervical dorsal root ganglion" EXACT [FMA:6361] +synonym: "eighth cervical spinal ganglion" EXACT [FMA:6361] +xref: BIRNLEX:2610 +xref: FMA:6361 +xref: http://linkedlifedata.com/resource/umls/id/C0501738 +xref: UMLS:C0501738 {source="BIRNLEX:2610"} +is_a: UBERON:0002834 ! cervical dorsal root ganglion + +[Term] +id: UBERON:0002845 +name: first thoracic dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "first thoracic dorsal root ganglion" EXACT [FMA:6321] +synonym: "first thoracic spinal ganglion" EXACT [FMA:6321] +xref: BIRNLEX:2611 +xref: EMAPA:25174 +xref: FMA:6321 +xref: http://linkedlifedata.com/resource/umls/id/C0501699 +xref: UMLS:C0501699 {source="BIRNLEX:2611"} +is_a: UBERON:0002835 ! thoracic dorsal root ganglion + +[Term] +id: UBERON:0002846 +name: second thoracic dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "second thoracic dorsal root ganglion" EXACT [FMA:6322] +synonym: "second thoracic spinal ganglion" EXACT [FMA:6322] +xref: BIRNLEX:2612 +xref: EMAPA:25175 +xref: FMA:6322 +xref: http://linkedlifedata.com/resource/umls/id/C0501700 +xref: UMLS:C0501700 {source="BIRNLEX:2612"} +is_a: UBERON:0002835 ! thoracic dorsal root ganglion + +[Term] +id: UBERON:0002847 +name: third thoracic dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "third thoracic dorsal root ganglion" EXACT [FMA:6323] +synonym: "third thoracic spinal ganglion" EXACT [FMA:6323] +xref: BIRNLEX:2613 +xref: EMAPA:25176 +xref: FMA:6323 +xref: http://linkedlifedata.com/resource/umls/id/C0501701 +xref: UMLS:C0501701 {source="BIRNLEX:2613"} +is_a: UBERON:0002835 ! thoracic dorsal root ganglion + +[Term] +id: UBERON:0002848 +name: fifth thoracic dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "fifth thoracic dorsal root ganglion" EXACT [FMA:6325] +synonym: "fifth thoracic spinal ganglion" EXACT [FMA:6325] +xref: BIRNLEX:2615 +xref: EMAPA:25179 +xref: FMA:6325 +xref: http://linkedlifedata.com/resource/umls/id/C0501703 +xref: UMLS:C0501703 {source="BIRNLEX:2615"} +is_a: UBERON:0002835 ! thoracic dorsal root ganglion + +[Term] +id: UBERON:0002849 +name: sixth thoracic dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "sixth thoracic dorsal root ganglion" EXACT [FMA:6326] +synonym: "sixth thoracic spinal ganglion" EXACT [FMA:6326] +xref: BIRNLEX:2616 +xref: EMAPA:25178 +xref: FMA:6326 +xref: http://linkedlifedata.com/resource/umls/id/C0501704 +xref: UMLS:C0501704 {source="BIRNLEX:2616"} +is_a: UBERON:0002835 ! thoracic dorsal root ganglion + +[Term] +id: UBERON:0002850 +name: seventh thoracic dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "seventh thoracic dorsal root ganglion" EXACT [FMA:6327] +synonym: "seventh thoracic spinal ganglion" EXACT [FMA:6327] +xref: BIRNLEX:2617 +xref: EMAPA:25180 +xref: FMA:6327 +xref: http://linkedlifedata.com/resource/umls/id/C0501705 +xref: UMLS:C0501705 {source="BIRNLEX:2617"} +is_a: UBERON:0002835 ! thoracic dorsal root ganglion + +[Term] +id: UBERON:0002851 +name: eighth thoracic dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "eighth thoracic dorsal root ganglion" EXACT [FMA:6328] +synonym: "eighth thoracic spinal ganglion" EXACT [FMA:6328] +xref: BIRNLEX:2618 +xref: EMAPA:25181 +xref: FMA:6328 +xref: http://linkedlifedata.com/resource/umls/id/C0501706 +xref: UMLS:C0501706 {source="BIRNLEX:2618"} +is_a: UBERON:0002835 ! thoracic dorsal root ganglion + +[Term] +id: UBERON:0002852 +name: ninth thoracic dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "ninth thoracic dorsal root ganglion" EXACT [FMA:6329] +synonym: "ninth thoracic spinal ganglion" EXACT [FMA:6329] +xref: BIRNLEX:2619 +xref: EMAPA:25182 +xref: FMA:6329 +xref: http://linkedlifedata.com/resource/umls/id/C0501707 +xref: UMLS:C0501707 {source="BIRNLEX:2619"} +is_a: UBERON:0002835 ! thoracic dorsal root ganglion + +[Term] +id: UBERON:0002853 +name: tenth thoracic dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "tenth thoracic dorsal root ganglion" EXACT [FMA:6330] +synonym: "tenth thoracic spinal ganglion" EXACT [FMA:6330] +xref: BIRNLEX:2620 +xref: EMAPA:25183 +xref: FMA:6330 +xref: http://linkedlifedata.com/resource/umls/id/C0501708 +xref: UMLS:C0501708 {source="BIRNLEX:2620"} +is_a: UBERON:0002835 ! thoracic dorsal root ganglion + +[Term] +id: UBERON:0002854 +name: eleventh thoracic dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "eleventh thoracic dorsal root ganglion" EXACT [FMA:6331] +synonym: "eleventh thoracic spinal ganglion" EXACT [FMA:6331] +xref: BIRNLEX:2621 +xref: EMAPA:25184 +xref: FMA:6331 +xref: http://linkedlifedata.com/resource/umls/id/C0501709 +xref: UMLS:C0501709 {source="BIRNLEX:2621"} +is_a: UBERON:0002835 ! thoracic dorsal root ganglion + +[Term] +id: UBERON:0002855 +name: twelfth thoracic dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "twelfth thoracic dorsal root ganglion" EXACT [FMA:6332] +synonym: "twelfth thoracic spinal ganglion" EXACT [FMA:6332] +xref: BIRNLEX:2622 +xref: EMAPA:25185 +xref: FMA:6332 +xref: http://linkedlifedata.com/resource/umls/id/C0501710 +xref: UMLS:C0501710 {source="BIRNLEX:2622"} +is_a: UBERON:0002835 ! thoracic dorsal root ganglion + +[Term] +id: UBERON:0002856 +name: second lumbar dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "second lumbar dorsal root ganglion" EXACT [FMA:6336] +synonym: "second lumbar spinal ganglion" EXACT [FMA:6336] +xref: BIRNLEX:2623 +xref: EMAPA:25165 +xref: FMA:6336 +xref: http://linkedlifedata.com/resource/umls/id/C0501714 +xref: UMLS:C0501714 {source="BIRNLEX:2623"} +is_a: UBERON:0002836 ! lumbar dorsal root ganglion + +[Term] +id: UBERON:0002857 +name: first lumbar dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "first lumbar dorsal root ganglion" EXACT [FMA:6335] +synonym: "first lumbar spinal ganglion" EXACT [FMA:6335] +xref: BIRNLEX:2624 +xref: EMAPA:25164 +xref: FMA:6335 +xref: http://linkedlifedata.com/resource/umls/id/C0501713 +xref: UMLS:C0501713 {source="BIRNLEX:2624"} +is_a: UBERON:0002836 ! lumbar dorsal root ganglion + +[Term] +id: UBERON:0002858 +name: third lumbar dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "third lumbar dorsal root ganglion" EXACT [FMA:6337] +synonym: "third lumbar spinal ganglion" EXACT [FMA:6337] +xref: BIRNLEX:2625 +xref: EMAPA:25166 +xref: FMA:6337 +xref: http://linkedlifedata.com/resource/umls/id/C0501715 +xref: UMLS:C0501715 {source="BIRNLEX:2625"} +is_a: UBERON:0002836 ! lumbar dorsal root ganglion + +[Term] +id: UBERON:0002859 +name: fifth lumbar dorsal root ganglion +alt_id: UBERON:0003944 +def: "The group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the fifth lumbar vertebra" [MP:0001022] +subset: defined_by_ordinal_series +subset: pheno_slim +synonym: "fifth lumbar dorsal root ganglion" EXACT [FMA:6339] +synonym: "fifth lumbar spinal ganglion" EXACT [FMA:6339] +synonym: "L5 dorsal root ganglion" EXACT [MP:0001022] +synonym: "L5 ganglion" RELATED [] +xref: BIRNLEX:2627 +xref: EMAPA:25168 +xref: FMA:6339 +xref: http://linkedlifedata.com/resource/umls/id/C0501717 +xref: UMLS:C0501717 {source="BIRNLEX:2627"} +is_a: UBERON:0002836 ! lumbar dorsal root ganglion + +[Term] +id: UBERON:0002860 +name: first sacral dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "first sacral dorsal root ganglion" EXACT [FMA:6342] +synonym: "first sacral spinal ganglion" EXACT [FMA:6342] +xref: BIRNLEX:2628 +xref: EMAPA:25170 +xref: FMA:6342 +xref: http://linkedlifedata.com/resource/umls/id/C0501720 +xref: UMLS:C0501720 {source="BIRNLEX:2628"} +is_a: UBERON:0002837 ! sacral dorsal root ganglion + +[Term] +id: UBERON:0002861 +name: second sacral dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "second sacral dorsal root ganglion" EXACT [FMA:6343] +synonym: "second sacral spinal ganglion" EXACT [FMA:6343] +xref: BIRNLEX:2629 +xref: EMAPA:25171 +xref: FMA:6343 +xref: http://linkedlifedata.com/resource/umls/id/C0501721 +xref: UMLS:C0501721 {source="BIRNLEX:2629"} +is_a: UBERON:0002837 ! sacral dorsal root ganglion + +[Term] +id: UBERON:0002862 +name: third sacral dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "third sacral dorsal root ganglion" EXACT [FMA:6344] +synonym: "third sacral spinal ganglion" EXACT [FMA:6344] +xref: BIRNLEX:2630 +xref: EMAPA:25172 +xref: FMA:6344 +xref: http://linkedlifedata.com/resource/umls/id/C0501722 +xref: UMLS:C0501722 {source="BIRNLEX:2630"} +is_a: UBERON:0002837 ! sacral dorsal root ganglion + +[Term] +id: UBERON:0002863 +name: fifth sacral dorsal root ganglion +subset: defined_by_ordinal_series +synonym: "fifth sacral dorsal root ganglion" EXACT [FMA:6346] +synonym: "fifth sacral spinal ganglion" EXACT [FMA:6346] +xref: BIRNLEX:2632 +xref: FMA:6346 +xref: http://linkedlifedata.com/resource/umls/id/C0501724 +xref: UMLS:C0501724 {source="BIRNLEX:2632"} +is_a: UBERON:0002837 ! sacral dorsal root ganglion + +[Term] +id: UBERON:0002864 +name: accessory cuneate nucleus +def: "The accessory cuneate nucleus is located lateral to the cuneate nucleus in the medulla oblongata at the level of the sensory decussation. It receives input from cervical spinal nerves and transmits that information to the cerebellum. These fibers are called cuneocerebellar fibers. In this function, the accessory cuneate nucleus is comparable to the upper extremity portion of the posterior spinocerebellar tract. [WP,unvetted]." [http://en.wikipedia.org/wiki/Accessory_cuneate_nucleus] +subset: uberon_slim +synonym: "ACu" BROAD ABBREVIATION [BIRNLEX:2634, NIFSTD:NeuroNames_abbrevSource] +synonym: "external cuneate nucleus" EXACT [FMA:72603] +synonym: "external cuneate nucleus" RELATED [BIRNLEX:2634] +synonym: "external cuneate nucleus (Monakow, Blumenau 1891)" RELATED [NeuroNames:768] +synonym: "lateral cuneate nucleus" EXACT [FMA:72603] +synonym: "lateral cuneate nucleus" RELATED [BIRNLEX:2634] +synonym: "nucleus cuneatis externus" RELATED LATIN [NeuroNames:768] +synonym: "nucleus cuneatus accessorius" RELATED LATIN [http://en.wikipedia.org/wiki/Accessory_cuneate_nucleus] +synonym: "nucleus cuneatus lateralis" RELATED LATIN [NeuroNames:768] +synonym: "nucleus funiculi cuneatus externus" RELATED LATIN [NeuroNames:768] +synonym: "nucleus Monakow" RELATED LATIN [NeuroNames:768] +synonym: "nucleus of corpus restiforme" EXACT [FMA:72603] +synonym: "nucleus of corpus restiforme" RELATED [BIRNLEX:2634] +xref: BAMS:ACu +xref: BAMS:ECU +xref: BAMS:ECu +xref: BIRNLEX:2634 +xref: BM:Me-CX +xref: EV:0100285 +xref: FMA:72603 +xref: HBA:9513 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=768 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=768 {source="BIRNLEX:2634"} +xref: http://en.wikipedia.org/wiki/Accessory_cuneate_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0152397 +xref: http://www.snomedbrowser.com/Codes/Details/15575006 +xref: MBA:903 +xref: UMLS:C0152397 {source="BIRNLEX:2634"} +is_a: UBERON:0007635 ! nucleus of medulla oblongata + +[Term] +id: UBERON:0002865 +name: arcuate nucleus of medulla +synonym: "ArcM" BROAD ABBREVIATION [BIRNLEX:2635, NIFSTD:NeuroNames_abbrevSource] +synonym: "arcuate hypothalamic nucleus medial part" RELATED [BAMS:ArcM] +synonym: "arcuate hypothalamic nucleus of medulla" EXACT [OBOL:automatic] +synonym: "arcuate nucleus (medulla)" RELATED [NeuroNames:775] +synonym: "arcuate nucleus of hypothalamus of medulla" EXACT [OBOL:automatic] +synonym: "arcuate nucleus of the medulla" RELATED [NeuroNames:775] +synonym: "arcuate nucleus, medial part" RELATED [BAMS:ArcM] +synonym: "arcuate nucleus-1" EXACT [FMA:72609] +synonym: "arcuate nucleus-2 of medulla" EXACT [OBOL:automatic] +synonym: "arcuate periventricular nucleus of medulla" EXACT [OBOL:automatic] +synonym: "infundibular hypothalamic nucleus of medulla" EXACT [OBOL:automatic] +synonym: "infundibular nucleus of medulla" EXACT [OBOL:automatic] +synonym: "infundibular periventricular nucleus of medulla" EXACT [OBOL:automatic] +synonym: "medial arcuate nucleus" EXACT [FMA:72609] +synonym: "medulla arcuate hypothalamic nucleus" EXACT [OBOL:automatic] +synonym: "medulla arcuate nucleus" EXACT [OBOL:automatic] +synonym: "medulla arcuate nucleus of hypothalamus" EXACT [OBOL:automatic] +synonym: "medulla arcuate nucleus-2" EXACT [OBOL:automatic] +synonym: "medulla arcuate periventricular nucleus" EXACT [OBOL:automatic] +synonym: "medulla infundibular hypothalamic nucleus" EXACT [OBOL:automatic] +synonym: "medulla infundibular nucleus" EXACT [OBOL:automatic] +synonym: "medulla infundibular periventricular nucleus" EXACT [OBOL:automatic] +synonym: "nuclei arcuati" RELATED LATIN [NeuroNames:775] +synonym: "nucleus arciformis pyramidalis" EXACT [BIRNLEX:2635] +synonym: "nucleus arcuatus myelencephali" RELATED LATIN [NeuroNames:775] +synonym: "nucleus arcuatus pyramidalis" RELATED LATIN [NeuroNames:775] +xref: BAMS:ArcM +xref: BIRNLEX:2635 +xref: DHBA:12536 +xref: FMA:72609 +xref: HBA:9519 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=775 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=775 {source="BIRNLEX:2635"} +xref: http://linkedlifedata.com/resource/umls/id/C0228544 +xref: UMLS:C0228544 {source="BIRNLEX:2635"} +is_a: UBERON:0007635 ! nucleus of medulla oblongata + +[Term] +id: UBERON:0002866 +name: caudal part of spinal trigeminal nucleus +synonym: "caudal nucleus" EXACT [BIRNLEX:2637] +synonym: "caudal nucleus (kandell)" EXACT [] +synonym: "caudal part of the spinal trigeminal nucleus" RELATED [NeuroNames:771] +synonym: "CSp5" BROAD ABBREVIATION [BIRNLEX:2637, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus caudalis tractus spinalis nervi trigemini" RELATED LATIN [NeuroNames:771] +synonym: "nucleus spinalis nervi trigemini, pars caudalis" RELATED LATIN [NeuroNames:771] +synonym: "spinal nucleus of the trigeminal caudal part" RELATED [BAMS:SPVC] +synonym: "spinal nucleus of the trigeminal nerve caudal part" RELATED [BAMS:SPVC] +synonym: "spinal nucleus of the trigeminal, caudal part" RELATED [NeuroNames:771] +synonym: "spinal trigeminal nucleus caudal part" RELATED [BAMS:Sp5C] +synonym: "spinal trigeminal nucleus, caudal part" EXACT [FMA:72606] +synonym: "subnucleus caudalis" RELATED LATIN [NeuroNames:771] +xref: BAMS:CSp5 +xref: BAMS:Sp5C +xref: BAMS:SPVC +xref: BIRNLEX:2637 +xref: DHBA:12573 +xref: FMA:72606 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=771 {source="BIRNLEX:2637"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=771 +xref: http://linkedlifedata.com/resource/umls/id/C0040994 +xref: MBA:429 +xref: MESH:D014275 +xref: UMLS:C0040994 {source="BIRNLEX:2637"} +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve + +[Term] +id: UBERON:0002867 +name: central gray substance of medulla +synonym: "central gray matter" EXACT [BIRNLEX:2638] +synonym: "central gray of the medulla" RELATED [NeuroNames:756] +synonym: "central gray substance of the medulla" RELATED [NeuroNames:756] +synonym: "CGM" BROAD ABBREVIATION [BIRNLEX:2638, NIFSTD:NeuroNames_abbrevSource] +synonym: "griseum periventriculare" RELATED LATIN [NeuroNames:756] +synonym: "medullary central gray substance" EXACT [FMA:72595] +xref: BAMS:CGM +xref: BIRNLEX:2638 +xref: DHBA:146034986 +xref: FMA:72595 +xref: HBA:265504914 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=756 {source="BIRNLEX:2638"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=756 +xref: http://linkedlifedata.com/resource/umls/id/C0262207 +xref: UMLS:C0262207 {source="BIRNLEX:2638"} +is_a: UBERON:0019263 ! gray matter of hindbrain +is_a: UBERON:0035011 ! central gray substance +intersection_of: UBERON:0035011 ! central gray substance +intersection_of: part_of UBERON:0001896 ! medulla oblongata +relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata + +[Term] +id: UBERON:0002868 +name: commissural nucleus of vagus nerve +synonym: "Cm10" BROAD ABBREVIATION [BIRNLEX:2639, NIFSTD:NeuroNames_abbrevSource] +synonym: "commissural nucleus of the vagus nerve" RELATED [NeuroNames:754] +synonym: "commissural nucleus-1" EXACT [FMA:54597] +synonym: "nucleus commissuralis" RELATED LATIN [NeuroNames:754] +synonym: "nucleus commissuralis nervi vagi" RELATED LATIN [NeuroNames:754] +synonym: "nucleus of inferior commissure" EXACT [FMA:54597] +synonym: "nucleus of inferior commisure" EXACT [BIRNLEX:2639] +xref: BAMS:Cm10 +xref: BIRNLEX:2639 +xref: FMA:54597 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=754 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=754 {source="BIRNLEX:2639"} +xref: http://linkedlifedata.com/resource/umls/id/C0175528 +xref: UMLS:C0175528 {source="BIRNLEX:2639"} +is_a: UBERON:0007635 ! nucleus of medulla oblongata +is_a: UBERON:0011775 {source="FMA"} ! vagus nerve nucleus + +[Term] +id: UBERON:0002869 +name: diffuse reticular nucleus +synonym: "DRt" BROAD ABBREVIATION [BIRNLEX:2641, NIFSTD:NeuroNames_abbrevSource] +synonym: "Koelliker-Fuse nucleus" EXACT [] +synonym: "Kolliker-Fuse nucleus" RELATED [BAMS:KF] +synonym: "kolliker-Fuse nucleus" EXACT [FMA:77220] +synonym: "Kolliker-Fuse subnucleus" RELATED [BAMS:KF] +synonym: "Kolloker-Fuse nucleus" EXACT [BIRNLEX:2641] +synonym: "kvlliker-Fuse subnucleus" RELATED [NeuroNames:760] +synonym: "kvlliker-Fuse subnucleus of parabrachial nucleus" RELATED [NeuroNames:760] +synonym: "Kölliker-Fuse nucleus" EXACT [] +synonym: "nucleus of Kolliker-Fuse" EXACT [] +synonym: "nucleus reticularis diffusus" RELATED LATIN [NeuroNames:760] +synonym: "nucleus reticularis diffusus (Koelliker)" RELATED LATIN [NeuroNames:760] +synonym: "nucleus subparabrachialis" EXACT LATIN [] +synonym: "subparabrachial nucleus" EXACT [FMA:77220] +xref: BAMS:DRt +xref: BAMS:KF +xref: BIRNLEX:2641 +xref: DHBA:12491 +xref: DHBA:12518 +xref: DMBA:16853 +xref: FMA:72598 +xref: FMA:77220 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=760 {source="BIRNLEX:2641"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=760 +xref: http://linkedlifedata.com/resource/umls/id/C0175530 +xref: UMLS:C0175530 {source="BIRNLEX:2641"} +is_a: UBERON:0007634 ! parabrachial nucleus + +[Term] +id: UBERON:0002870 +name: dorsal motor nucleus of vagus nerve +def: "A cranial nerve nucleus for the vagus nerve in the medulla that lies under the floor of the fourth ventricle. It mostly serves parasympathetic vagal functions in the gastrointestinal tract, lungs, and other thoracic and abdominal vagal innervations. The cell bodies for the preganglionic parasympathetic vagal neurons that innervate the heart reside in the nucleus ambiguus.[WP,unvetted]." [http://en.wikipedia.org/wiki/Dorsal_nucleus_of_vagus_nerve] +subset: uberon_slim +synonym: "dorsal efferent nucleus of vagus" EXACT [FMA:54592] +synonym: "dorsal motor nucleus" RELATED [NeuroNames:755] +synonym: "dorsal motor nucleus of the vagus" RELATED [http://en.wikipedia.org/wiki/Dorsal_nucleus_of_vagus_nerve] +synonym: "dorsal motor nucleus of the vagus (vagal nucleus)" EXACT [DHBA:10N] +synonym: "dorsal motor nucleus of the vagus nerve" RELATED [http://en.wikipedia.org/wiki/Dorsal_nucleus_of_vagus_nerve] +synonym: "dorsal motor nucleus of vagus" RELATED [BAMS:10] +synonym: "dorsal motor nucleus of vagus nerve" RELATED [http://en.wikipedia.org/wiki/Dorsal_nucleus_of_vagus_nerve] +synonym: "dorsal motor nucleus of vagus X nerve" EXACT [MA:0001036] +synonym: "dorsal motor vagal nucleus" RELATED [http://en.wikipedia.org/wiki/Dorsal_nucleus_of_vagus_nerve] +synonym: "dorsal nucleus of the vagus nerve" RELATED [http://en.wikipedia.org/wiki/Dorsal_nucleus_of_vagus_nerve] +synonym: "dorsal nucleus of vagus nerve" RELATED [http://en.wikipedia.org/wiki/Dorsal_nucleus_of_vagus_nerve] +synonym: "dorsal vagal nucleus" EXACT [BIRNLEX:2642] +synonym: "dorsal vagal nucleus" RELATED [http://en.wikipedia.org/wiki/Dorsal_nucleus_of_vagus_nerve] +synonym: "nucleus alaris" EXACT [BIRNLEX:2642] +synonym: "nucleus alaris (Oertel)" RELATED LATIN [NeuroNames:755] +synonym: "nucleus dorsalis motorius nervi vagi" RELATED LATIN [NeuroNames:755] +synonym: "nucleus dorsalis nervi vagi" RELATED LATIN [NeuroNames:755] +synonym: "nucleus posterior nervi vagi" RELATED [http://en.wikipedia.org/wiki/Dorsal_nucleus_of_vagus_nerve] +synonym: "nucleus vagalis dorsalis" RELATED LATIN [NeuroNames:755] +synonym: "posterior nucleus of vagus nerve" RELATED [http://en.wikipedia.org/wiki/Dorsal_nucleus_of_vagus_nerve] +synonym: "vagus nucleus" RELATED [http://en.wikipedia.org/wiki/Dorsal_nucleus_of_vagus_nerve] +xref: BAMS:10 +xref: BAMS:DMX +xref: BIRNLEX:2642 +xref: BM:DX +xref: CALOHA:TS-2381 +xref: DHBA:12550 +xref: EHDAA2:0004649 +xref: EMAPA:35291 +xref: EV:0100287 +xref: FMA:54592 +xref: HBA:9545 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=755 {source="BIRNLEX:2642"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=755 +xref: http://en.wikipedia.org/wiki/Dorsal_nucleus_of_vagus_nerve +xref: http://linkedlifedata.com/resource/umls/id/C0152401 +xref: http://linkedlifedata.com/resource/umls/id/C0926535 +xref: http://www.snomedbrowser.com/Codes/Details/52884007 +xref: MA:0001036 +xref: MBA:839 +xref: NCIT:C32475 +xref: UMLS:C0152401 {source="BIRNLEX:2642"} +xref: UMLS:C0926535 {source="ncithesaurus:Dorsal_Nucleus_of_the_Vagus_Nerve"} +is_a: UBERON:0007635 ! nucleus of medulla oblongata +is_a: UBERON:0011778 ! motor nucleus of vagal nerve +relationship: develops_from UBERON:0010127 ! future dorsal motor nucleus of vagus +relationship: immediate_transformation_of UBERON:0010127 {evidence="definitional"} ! future dorsal motor nucleus of vagus + +[Term] +id: UBERON:0002871 +name: hypoglossal nucleus +def: "Nucleus forming a longitudinal cell column in the medulla, close beneath the floor of the 4th ventricle, containing motor neurons that innervate the muscles of the tongue (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 453)" [BIRNLEX:2644] +subset: pheno_slim +subset: uberon_slim +synonym: "hypoglossal nerve nucleus" EXACT [FMA:54505] +synonym: "hypoglossal nucleus" EXACT [FMA:54505] +synonym: "hypoglossal XII nucleus" EXACT [MA:0001039] +synonym: "nucleus hypoglossalis" RELATED LATIN [NeuroNames:757] +synonym: "nucleus nervi hypoglossi" EXACT LATIN [FMA:54505, FMA:TA] +synonym: "nucleus nervi hypoglossi" RELATED LATIN [http://en.wikipedia.org/wiki/Hypoglossal_nucleus] +synonym: "nucleus of hypoglossal nerve" EXACT [FMA:54505] +synonym: "twelfth cranial nerve nucleus" EXACT [FMA:54505] +xref: BAMS:12 +xref: BAMS:12N +xref: BAMS:XII +xref: BIRNLEX:2644 +xref: BM:XII +xref: DHBA:12545 +xref: EHDAA2:0004635 +xref: EMAPA:35416 +xref: EV:0100286 +xref: FMA:54505 +xref: HBA:9557 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=757 {source="BIRNLEX:2644"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=757 +xref: http://linkedlifedata.com/resource/umls/id/C0228802 +xref: http://www.snomedbrowser.com/Codes/Details/47361005 +xref: Hypoglossal:nucleus +xref: MA:0001039 +xref: MBA:773 +xref: NCIT:C12899 +xref: ncithesaurus:Nucleus_of_the_Hypoglossal_Nerve +xref: UMLS:C0228802 {source="ncithesaurus:Hypoglossal_Nucleus"} +xref: UMLS:C0228802 {source="BIRNLEX:2644"} +xref: VHOG:0001358 +is_a: UBERON:0000126 ! cranial nerve nucleus +is_a: UBERON:0007635 ! nucleus of medulla oblongata +intersection_of: UBERON:0000126 ! cranial nerve nucleus +intersection_of: extends_fibers_into UBERON:0001650 ! hypoglossal nerve +relationship: extends_fibers_into UBERON:0001650 ! hypoglossal nerve + +[Term] +id: UBERON:0002872 +name: inferior salivatory nucleus +def: "In the brain, the inferior salivatory nucleus is a cluster of neurons controlling the parasympathetic input to the parotid gland. It is one of the components of the glossopharyngeal nerve. [WP,unvetted]." [http://en.wikipedia.org/wiki/Inferior_salivatory_nucleus] +subset: uberon_slim +synonym: "inferior salivary nucleus" EXACT [GO:0021752] +synonym: "inferior salivatary nucleus" EXACT [] +synonym: "nucleus salivarius inferior" RELATED LATIN [NeuroNames:764] +synonym: "nucleus salivatorius caudalis" RELATED LATIN [NeuroNames:764] +synonym: "nucleus salivatorius inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_salivatory_nucleus] +synonym: "nucleus salivatorius inferior nervi glossopharyngei" RELATED LATIN [NeuroNames:764] +xref: BAMS:IS +xref: BAMS:ISN +xref: BIRNLEX:2645 +xref: DHBA:12544 +xref: EHDAA2:0004641 +xref: FMA:72601 +xref: HBA:9569 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=764 {source="BIRNLEX:2645"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=764 +xref: http://en.wikipedia.org/wiki/Inferior_salivatory_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0175534 +xref: MBA:106 +xref: UMLS:C0175534 {source="BIRNLEX:2645"} +is_a: UBERON:0000126 ! cranial nerve nucleus +is_a: UBERON:0004133 ! salivatory nucleus +is_a: UBERON:0007635 ! nucleus of medulla oblongata +relationship: develops_from UBERON:0010124 ! future inferior salivatory nucleus +relationship: extends_fibers_into UBERON:0001649 ! glossopharyngeal nerve +relationship: immediate_transformation_of UBERON:0010124 {evidence="definitional"} ! future inferior salivatory nucleus + +[Term] +id: UBERON:0002873 +name: interpolar part of spinal trigeminal nucleus +synonym: "interpolar part of the spinal trigeminal nucleus" RELATED [NeuroNames:817] +synonym: "nucleus interpolaris tractus spinalis nervi trigemini" RELATED LATIN [NeuroNames:817] +synonym: "nucleus of spinal tract of N. V (subnucleus interpolaris)" RELATED [NeuroNames:817] +synonym: "nucleus spinalis nervi trigemini, pars interpolaris" RELATED LATIN [NeuroNames:817] +synonym: "spinal nucleus of the trigeminal interpolar part" RELATED [BAMS:SPVI] +synonym: "spinal nucleus of the trigeminal nerve interpolar part" RELATED [BAMS:SPVI] +synonym: "spinal nucleus of the trigeminal, interpolar part" RELATED [NeuroNames:817] +synonym: "spinal trigeminal nucleus, interpolar part" RELATED [NeuroNames:817] +xref: BAMS:ISp5 +xref: BAMS:Sp5I +xref: BAMS:SPVI +xref: BIRNLEX:2646 +xref: DHBA:12578 +xref: FMA:235324 +xref: HBA:9678 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=817 {source="BIRNLEX:2646"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=817 +xref: http://linkedlifedata.com/resource/umls/id/C0175418 +xref: MBA:437 +xref: UMLS:C0175418 {source="BIRNLEX:2646"} +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve + +[Term] +id: UBERON:0002874 +name: lateral pericuneate nucleus +synonym: "LPCu" BROAD ABBREVIATION [BIRNLEX:2647, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus pericuneatus lateralis" RELATED LATIN [NeuroNames:769] +xref: BAMS:LPCu +xref: BIRNLEX:2647 +xref: DHBA:12526 +xref: FMA:72604 +xref: HBA:9581 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=769 {source="BIRNLEX:2647"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=769 +xref: http://linkedlifedata.com/resource/umls/id/C0262271 +xref: UMLS:C0262271 {source="BIRNLEX:2647"} +is_a: UBERON:0007635 ! nucleus of medulla oblongata +disjoint_from: UBERON:0002875 {source="lexical"} ! medial pericuneate nucleus + +[Term] +id: UBERON:0002875 +name: medial pericuneate nucleus +synonym: "MPCu" BROAD ABBREVIATION [BIRNLEX:2648, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus pericuneatus medialis" RELATED LATIN [NeuroNames:770] +xref: BAMS:MPCu +xref: BIRNLEX:2648 +xref: DHBA:12527 +xref: FMA:72605 +xref: HBA:9584 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=770 {source="BIRNLEX:2648"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=770 +xref: http://linkedlifedata.com/resource/umls/id/C0262288 +xref: UMLS:C0262288 {source="BIRNLEX:2648"} +is_a: UBERON:0007635 ! nucleus of medulla oblongata + +[Term] +id: UBERON:0002876 +name: nucleus intercalatus +alt_id: UBERON:0002878 +comment: two NIF classes with the same name +synonym: "In" BROAD ABBREVIATION [BIRNLEX:2654, NIFSTD:NeuroNames_abbrevSource] +synonym: "intercalated nucleus of medulla" EXACT [FMA:72597] +synonym: "intercalated nucleus of the medulla" RELATED [NeuroNames:759] +synonym: "nucleus intercalates" RELATED [BAMS:NIS] +synonym: "nucleus intercalatus (Staderini)" RELATED LATIN [NeuroNames:759] +synonym: "nucleus intercalatus (Staderini)" RELATED [NeuroNames:759] +synonym: "nucleus intercalatus of medulla" EXACT [FMA:72597] +synonym: "nucleus of Staderini" EXACT [] +synonym: "nucleus Staderini" EXACT [BIRNLEX:2654] +synonym: "nucleus Staderini" EXACT [BIRNLEX:2651] +xref: BAMS:In +xref: BAMS:NIS +xref: BIRNLEX:2651 +xref: BIRNLEX:2654 +xref: DHBA:12612 +xref: DMBA:16339 +xref: EV:0100291 +xref: FMA:72597 +xref: HBA:9572 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=759 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=759 {source="BIRNLEX:2651"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=759 {source="BIRNLEX:2654"} +xref: http://linkedlifedata.com/resource/umls/id/C0152398 +xref: http://linkedlifedata.com/resource/umls/id/C1289504 +xref: http://www.snomedbrowser.com/Codes/Details/369077004 +xref: MBA:161 +xref: UMLS:C0152398 {source="BIRNLEX:2651"} +xref: UMLS:C0152398 {source="BIRNLEX:2654"} +xref: UMLS:C1289504 {source="BIRNLEX:2651"} +xref: UMLS:C1289504 {source="BIRNLEX:2654"} +is_a: UBERON:0007635 ! nucleus of medulla oblongata + +[Term] +id: UBERON:0002877 +name: parasolitary nucleus +synonym: "nucleus fasciculus solitarius" EXACT [BIRNLEX:2653] +synonym: "nucleus juxtasolitarius" EXACT [BIRNLEX:2653] +synonym: "PSol" BROAD ABBREVIATION [BIRNLEX:2653, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:PAS +xref: BAMS:PSol +xref: BIRNLEX:2653 +xref: DHBA:12571 +xref: FMA:77091 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=7 +xref: MBA:859 +xref: OldNeuroNames:1639234958 {source="BIRNLEX:2653"} +is_a: UBERON:0007635 ! nucleus of medulla oblongata + +[Term] +id: UBERON:0002879 +name: peritrigeminal nucleus +synonym: "nucleus peritrigeminalis" RELATED LATIN [NeuroNames:762] +synonym: "Pe5" BROAD ABBREVIATION [BIRNLEX:2655, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:Pe5 +xref: BIRNLEX:2655 +xref: DHBA:12658 +xref: FMA:72600 +xref: HBA:9633 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=762 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=762 {source="BIRNLEX:2655"} +xref: http://linkedlifedata.com/resource/umls/id/C0262307 +xref: UMLS:C0262307 {source="BIRNLEX:2655"} +is_a: UBERON:0007635 ! nucleus of medulla oblongata + +[Term] +id: UBERON:0002880 +name: pontobulbar nucleus +synonym: "corpus pontobulbare" RELATED LATIN [NeuroNames:774] +synonym: "nucleus of circumolivary bundle" EXACT [FMA:72608] +synonym: "nucleus pontobulbaris" RELATED LATIN [NeuroNames:774] +synonym: "PnB" BROAD ABBREVIATION [BIRNLEX:2656, NIFSTD:NeuroNames_abbrevSource] +synonym: "pontobulbar body" EXACT [FMA:72608] +xref: BAMS:PnB +xref: BIRNLEX:2656 +xref: DHBA:12614 +xref: FMA:72608 +xref: HBA:9636 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=774 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=774 {source="BIRNLEX:2656"} +xref: http://linkedlifedata.com/resource/umls/id/C0175532 +xref: UMLS:C0175532 {source="BIRNLEX:2656"} +is_a: UBERON:0007635 ! nucleus of medulla oblongata + +[Term] +id: UBERON:0002881 +name: sublingual nucleus +def: "In the substance of the formatio reticularis are two small nuclei of gray matter. The one near the dorsal aspect of the hilus of the inferior olivary nucleus is called the Sublingual nucleus (inferior central nucleus, nucleus of Roller.) [WP,unvetted]." [http://en.wikipedia.org/wiki/Sublingual_nucleus] +subset: uberon_slim +synonym: "inferior central nucleus" RELATED INCONSISTENT [http://en.wikipedia.org/wiki/Sublingual_nucleus] +synonym: "nucleus of roller" EXACT [FMA:68574] +synonym: "nucleus of roller" RELATED [http://en.wikipedia.org/wiki/Sublingual_nucleus] +synonym: "nucleus parvocellularis nervi hypoglossi" RELATED LATIN [NeuroNames:763] +synonym: "nucleus Roller" RELATED LATIN [NeuroNames:763] +synonym: "nucleus sublingualis" RELATED LATIN [http://en.wikipedia.org/wiki/Sublingual_nucleus] +synonym: "Roller's nucleus" EXACT [] +synonym: "SLg" BROAD ABBREVIATION [BIRNLEX:2657, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:NR +xref: BAMS:Ro +xref: BAMS:SLg +xref: BIRNLEX:2657 +xref: DHBA:12654 +xref: FMA:68574 +xref: HBA:9627 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=763 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=763 {source="BIRNLEX:2657"} +xref: http://linkedlifedata.com/resource/umls/id/C0228552 +xref: http://www.snomedbrowser.com/Codes/Details/369076008 +xref: MBA:177 +xref: Sublingual:nucleus +xref: UMLS:C0228552 {source="BIRNLEX:2657"} +is_a: UBERON:0007635 ! nucleus of medulla oblongata + +[Term] +id: UBERON:0002882 +name: supraspinal nucleus +synonym: "nucleus substantiae grisea ventralis" RELATED LATIN [NeuroNames:776] +synonym: "nucleus substantiae griseae ventralis" RELATED LATIN [NeuroNames:776] +synonym: "nucleus supraspinalis" RELATED LATIN [NeuroNames:776] +synonym: "SSp" BROAD ABBREVIATION [BIRNLEX:2658, NIFSTD:NeuroNames_abbrevSource] +xref: BIRNLEX:2658 +xref: BM:SSp +xref: DHBA:12661 +xref: EV:0100282 +xref: FMA:74507 +xref: HBA:9694 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=776 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=776 {source="BIRNLEX:2658"} +xref: http://linkedlifedata.com/resource/umls/id/C0175538 +xref: UMLS:C0175538 {source="BIRNLEX:2658"} +is_a: UBERON:0007635 ! nucleus of medulla oblongata + +[Term] +id: UBERON:0002883 +name: central amygdaloid nucleus +def: "The output region of the amygdala responsible for controlling responses (Phelps & LeDoux, 2005, http://www.ncbi.nlm.nih.gov/pubmed/ 16242399)." [BIRNLEX:2682] +synonym: "amygdala central nucleus" RELATED [BTO:0002686] +synonym: "central amygdala" EXACT [XAO:0004542] +synonym: "central amygdala" RELATED [] +synonym: "central amygdalar nucleus" RELATED [NeuroNames:243] +synonym: "central nuclear group" RELATED [DHBA:10363] +synonym: "central nucleus amygdala" RELATED [NeuroNames:243] +synonym: "central nucleus of amygda" EXACT [BIRNLEX:2682] +synonym: "central nucleus of amygdala" EXACT [FMA:74047] +synonym: "central nucleus of the amygdala" RELATED [BAMS:CEA] +synonym: "nucleus amygdalae centralis" RELATED [BTO:0002686] +synonym: "nucleus amygdaloideus centralis" RELATED LATIN [NeuroNames:243] +synonym: "nucleus centralis amygdalae" RELATED LATIN [NeuroNames:243] +xref: BAMS:ACE +xref: BAMS:Ce +xref: BAMS:CEA +xref: BAMS:CeA +xref: BIRNLEX:2682 +xref: BM:Tel-Am-ACE +xref: BTO:0002686 +xref: DHBA:10363 +xref: EMAPA:35204 +xref: EV:0100191 +xref: FMA:74047 +xref: HBA:4359 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=243 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=243 {source="BIRNLEX:2682"} +xref: http://linkedlifedata.com/resource/umls/id/C0175219 +xref: MA:0002923 +xref: MBA:536 +xref: PBA:10121 +xref: UMLS:C0175219 {source="BIRNLEX:2682"} +xref: XAO:0004542 +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0001876 ! amygdala + +[Term] +id: UBERON:0002884 +name: intercalated amygdaloid nuclei +def: "Discrete clusters of cells intercalated among the major amygdaloid nuclei. They stain darkly in Nissl stains and have been identified in all mammals. The main groups lie between the lateral-basolateral nuclear coplex and the central and medial nuclei. Additional cell groups have been described by some in other locations (Millhouse, O. E. The intercalated cells of the amygdala. J Comp Neurol 247: 246-271, 1986)., Groups of cells located between the lateral basolateral amygaloid nuclear complex and the central nucleus of the amygdala. They stain darkly in Nissl stains and have been identified in all mammals. (Millhouse, O. E. The intercalated cells of the amygdala. J Comp Neurol 247: 246-271, 1986)" [BIRNLEX:2683] +synonym: "intercalated amygdalar nuclei" RELATED [NeuroNames:250] +synonym: "intercalated amygdalar nucleus" RELATED [BAMS:IA] +synonym: "intercalated amygdaloid nuclei" EXACT [FMA:61868] +synonym: "intercalated amygdaloid nucleus" EXACT [FMA:61868] +synonym: "intercalated cell islands" RELATED [BAMS:I] +synonym: "intercalated masses" RELATED [NeuroNames:250] +synonym: "intercalated masses of nucleus amygdaloideus" EXACT [FMA:61868] +synonym: "intercalated nuclei amygdala" RELATED [NeuroNames:250] +synonym: "intercalated nuclei of amygdala" EXACT [FMA:61868] +synonym: "intercalated nuclei of the amygdala" RELATED [BAMS:I] +synonym: "intercalated nuclei of the amygdala" RELATED [BAMS:IA] +synonym: "intercalated nucleus of the amygdala" EXACT [BIRNLEX:2683] +synonym: "massa intercalata" EXACT [BIRNLEX:2683] +synonym: "massa intercalata of amygdala" EXACT [BIRNLEX:2683] +synonym: "nucleus amygdalae intercalatus" RELATED LATIN [NeuroNames:250] +synonym: "nucleus intercalatus amygdalae" RELATED LATIN [NeuroNames:250] +xref: BAMS:I +xref: BAMS:IA +xref: BIRNLEX:2683 +xref: DHBA:10378 +xref: DMBA:15876 +xref: EMAPA:35434 +xref: FMA:61868 +xref: HBA:4375 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=250 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=250 {source="BIRNLEX:2683"} +xref: http://linkedlifedata.com/resource/umls/id/C0262259 +xref: MA:0002925 +xref: MBA:1105 +xref: PBA:10132 +xref: UMLS:C0262259 {source="BIRNLEX:2683"} +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0001876 ! amygdala + +[Term] +id: UBERON:0002885 +name: accessory basal amygdaloid nucleus +synonym: "accessory basal nucleus" RELATED [NeuroNames:249] +synonym: "accessory basal nucleus of amygdala" EXACT [BIRNLEX:2686] +synonym: "accessory basal nucleus of the amygdala" RELATED [NeuroNames:249] +synonym: "basal amygdaloid nucleus, medial part" EXACT [BIRNLEX:2686] +synonym: "basomedial nucleus (accessory basal nucleus)" EXACT [DHBA:10369] +synonym: "basomedial nucleus (de olmos)" EXACT [BIRNLEX:2686] +synonym: "basomedial nucleus of amygdala" RELATED [NeuroNames:249] +synonym: "basomedial nucleus of the amygdala" RELATED [NeuroNames:249] +synonym: "medial principal nucleus" RELATED [BIRNLEX:2686] +synonym: "nucleus amygdalae basalis accessorius" RELATED LATIN [NeuroNames:249] +synonym: "nucleus amygdaloideus basalis, pars medialis" RELATED LATIN [NeuroNames:249] +synonym: "nucleus amygdaloideus basomedialis" RELATED LATIN [NeuroNames:249] +synonym: "nucleus basalis accessorius amygdalae" RELATED LATIN [NeuroNames:249] +xref: BAMS:ABA +xref: BAMS:BAM +xref: BIRNLEX:2686 +xref: DHBA:10369 +xref: FMA:61867 +xref: HBA:4350 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=249 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=249 {source="BIRNLEX:2686"} +xref: http://linkedlifedata.com/resource/umls/id/C0175223 +xref: UMLS:C0175223 {source="BIRNLEX:2686"} +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0006107 {source="NIFSTD"} ! basolateral amygdaloid nuclear complex + +[Term] +id: UBERON:0002886 +name: lateral amygdaloid nucleus +def: "The sensory interface of the amygdala where plasticity is mediated (Phelps & LeDoux, 2005, http://www.ncbi.nlm.nih.gov/pubmed/ 16242399)." [BIRNLEX:2687] +synonym: "lateral amygdala" RELATED [] +synonym: "lateral amygdalar nucleus" RELATED [NeuroNames:245] +synonym: "lateral nucleus of amygdala" EXACT [FMA:61866] +synonym: "lateral nucleus of the amygdala" RELATED [NeuroNames:245] +synonym: "lateral principal nucleus of amygdala" EXACT [FMA:61866] +synonym: "medial principal nucleus" RELATED [BIRNLEX:2687] +synonym: "nucleus amygdalae lateralis" RELATED [BTO:0002704] +synonym: "nucleus amygdaloideus lateralis" RELATED LATIN [NeuroNames:245] +synonym: "nucleus lateralis amygdalae" RELATED LATIN [NeuroNames:245] +xref: BAMS:ALA +xref: BAMS:LA +xref: BAMS:La +xref: BIRNLEX:2687 +xref: BM:Tel-Am-ALA +xref: BTO:0002704 +xref: DHBA:10367 +xref: DMBA:15944 +xref: EMAPA:35476 +xref: FMA:61866 +xref: HBA:4378 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=245 {source="BIRNLEX:2687"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=245 +xref: http://linkedlifedata.com/resource/umls/id/C0175221 +xref: MA:0002926 +xref: MBA:131 +xref: PBA:10116 +xref: UMLS:C0175221 {source="BIRNLEX:2687"} +is_a: UBERON:0009663 ! telencephalic nucleus +disjoint_from: UBERON:0002892 {source="lexical"} ! medial amygdaloid nucleus +relationship: part_of UBERON:0006107 {source="NIFSTD"} ! basolateral amygdaloid nuclear complex + +[Term] +id: UBERON:0002887 +name: basal amygdaloid nucleus +synonym: "basal nucleus of the amygdala" RELATED [NeuroNames:246] +synonym: "basolateral amygaloid nucleus" EXACT [BIRNLEX:2692] +synonym: "basolateral amygdalar nucleus" EXACT [BIRNLEX:2692] +synonym: "basolateral amygdaloid nucleus" EXACT [FMA:68855] +synonym: "basolateral nucleus (de olmos)" EXACT [] +synonym: "basolateral nucleus of amygdala" RELATED [NeuroNames:246] +synonym: "basolateral nucleus of the amygdala" RELATED [NeuroNames:246] +synonym: "intermediate principal nucleus" EXACT [FMA:68855] +synonym: "nucleus amygdalae basalis" RELATED LATIN [NeuroNames:246] +synonym: "nucleus amygdalae basalis lateralis" EXACT LATIN [FMA:68855, FMA:TA] +synonym: "nucleus amygdaloideus basalis" RELATED LATIN [NeuroNames:246] +synonym: "nucleus amygdaloideus basolateralis" RELATED LATIN [NeuroNames:246] +synonym: "nucleus basalis amygdalae" RELATED LATIN [NeuroNames:246] +xref: BAMS:ABL +xref: BAMS:BL +xref: BAMS:BLA +xref: BIRNLEX:2692 +xref: EMAPA:35167 +xref: FMA:68855 +xref: HBA:4341 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=246 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=246 {source="BIRNLEX:2692"} +xref: http://linkedlifedata.com/resource/umls/id/C0175222 +xref: MA:0002921 +xref: MBA:295 +xref: UMLS:C0175222 {source="BIRNLEX:2692"} +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0006107 {source="NIFSTD"} ! basolateral amygdaloid nuclear complex + +[Term] +id: UBERON:0002888 +name: lateral part of basal amygdaloid nucleus +synonym: "lateral basal nucleus of amygdala" EXACT [BIRNLEX:2695] +synonym: "lateral basal nucleus of the amygdala" EXACT [FMA:68857] +synonym: "lateral division of basal nucleus" EXACT [BIRNLEX:2695] +synonym: "lateral division of the basal nucleus" EXACT [FMA:68857] +synonym: "lateral part of the basal amygdalar nucleus" RELATED [NeuroNames:247] +synonym: "lateral part of the basolateral nucleus" RELATED [NeuroNames:247] +synonym: "nucleus amygdalae basalis, pars lateralis" RELATED LATIN [NeuroNames:247] +synonym: "nucleus amygdaloideus basalis, pars lateralis magnocellularis" RELATED LATIN [NeuroNames:247] +synonym: "nucleus basalis lateralis amygdalae" RELATED LATIN [NeuroNames:247] +xref: BAMS:BAL +xref: BIRNLEX:2695 +xref: FMA:68857 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=247 {source="BIRNLEX:2695"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=247 +xref: http://linkedlifedata.com/resource/umls/id/C0694601 +xref: UMLS:C0694601 {source="BIRNLEX:2695"} +is_a: UBERON:0005401 ! cerebral hemisphere gray matter +disjoint_from: UBERON:0002889 {source="lexical"} ! medial part of basal amygdaloid nucleus +relationship: part_of UBERON:0002887 ! basal amygdaloid nucleus + +[Term] +id: UBERON:0002889 +name: medial part of basal amygdaloid nucleus +synonym: "basomedial amygdalar nucleus" EXACT [ABA:BMA] +synonym: "basomedial amygdaloid nucleus" EXACT [FMA:68858, MA:0002922] +synonym: "basomedial amygdaloid nucleus anterior part" RELATED [BAMS:BMA] +synonym: "basomedial amygdaloid nucleus anterior subdivision" RELATED [BAMS:BMA] +synonym: "basomedial amygdaloid nucleus, anterior part" RELATED [BAMS:BMA] +synonym: "medial basal nucleus of amygdala" EXACT [FMA:68858] +synonym: "medial division of basal nucleus" EXACT [FMA:68858] +synonym: "medial part of the basal amygdalar nucleus" RELATED [NeuroNames:248] +synonym: "medial part of the basolateral nucleus" RELATED [NeuroNames:248] +synonym: "nucleus amygdalae basalis medialis" EXACT LATIN [FMA:68858, FMA:TA] +synonym: "nucleus amygdalae basalis, pars medialis" RELATED LATIN [NeuroNames:248] +synonym: "nucleus amygdaloideus basalis pars lateralis parvocellularis" RELATED LATIN [NeuroNames:248] +synonym: "nucleus basalis medialis amygdalae" RELATED LATIN [NeuroNames:248] +xref: BAMS:ABM +xref: BAMS:BM +xref: BAMS:BMA +xref: BIRNLEX:2696 +xref: DMBA:15947 +xref: EMAPA:35168 +xref: FMA:68858 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=248 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=248 {source="BIRNLEX:2696"} +xref: http://linkedlifedata.com/resource/umls/id/C1134422 +xref: MA:0002922 +xref: MBA:319 +xref: UMLS:C1134422 {source="BIRNLEX:2696"} +is_a: UBERON:0005401 ! cerebral hemisphere gray matter +relationship: part_of UBERON:0002887 ! basal amygdaloid nucleus + +[Term] +id: UBERON:0002890 +name: anterior amygdaloid area +synonym: "anterior amygaloid area" EXACT [BIRNLEX:2698] +synonym: "anterior amygdalar area" EXACT [BIRNLEX:2698] +synonym: "anterior cortical nucleus" RELATED [BIRNLEX:2698] +synonym: "area amydaliformis anterior" RELATED LATIN [NeuroNames:239] +synonym: "area amygdaloidea anterior" RELATED LATIN [NeuroNames:239] +synonym: "area anterior amygdalae" RELATED LATIN [NeuroNames:239] +xref: BAMS:AA +xref: BAMS:AAA +xref: BIRNLEX:2698 +xref: BM:Tel-Am-AAA +xref: DHBA:10362 +xref: DMBA:15994 +xref: EMAPA:35127 +xref: FMA:61861 +xref: HBA:265504476 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=239 {source="BIRNLEX:2698"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=239 +xref: http://linkedlifedata.com/resource/umls/id/C0175215 +xref: MA:0002919 +xref: MBA:23 +xref: PBA:10103 +xref: UMLS:C0175215 {source="BIRNLEX:2698"} +is_a: UBERON:0005401 ! cerebral hemisphere gray matter +relationship: part_of UBERON:0006108 {source="NIFSTD"} ! corticomedial nuclear complex + +[Term] +id: UBERON:0002891 +name: cortical amygdaloid nucleus +def: "Three layered structure that is located in the caudal aspect of the amygdala bordering the periamygdaloid cortex laterally." [BIRNLEX:2700] +synonym: "cortex periamygdaloideus" RELATED LATIN [NeuroNames:240] +synonym: "cortical amygdala" RELATED [] +synonym: "cortical amygdalar area" RELATED [NeuroNames:240] +synonym: "cortical amygdalar nucleus" RELATED [NeuroNames:240] +synonym: "nucleus amygdalae corticalis" RELATED [BTO:0002703] +synonym: "nucleus corticalis amygdalae" RELATED LATIN [NeuroNames:240] +synonym: "posterior cortical amygdalar nucleus" RELATED [NeuroNames:2640] +synonym: "posterior cortical amygdaloid nucleus" EXACT [BIRNLEX:2700] +synonym: "posterior cortical nucleus of amygdala" EXACT [FMA:61862] +synonym: "posterior cortical nucleus of the amygdala" RELATED [BAMS:ACOP] +synonym: "posterior cortical nucleus of the amygdala" RELATED [BAMS:Cop] +synonym: "ventral cortical amygdaloid nucleus" RELATED [NeuroNames:240] +synonym: "ventral cortical nucleus" RELATED [NeuroNames:240] +xref: BAMS:ACOP +xref: BAMS:PCo +xref: BIRNLEX:2700 +xref: BTO:0002703 +xref: EMAPA:35254 +xref: EV:0100193 +xref: FMA:61862 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=240 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=240 {source="BIRNLEX:2700"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2640 +xref: http://linkedlifedata.com/resource/umls/id/C0175216 +xref: MA:0002924 +xref: MBA:631 +xref: UMLS:C0175216 {source="BIRNLEX:2700"} +is_a: UBERON:0009663 ! telencephalic nucleus +disjoint_from: UBERON:0034991 {source="lexical"} ! anterior cortical amygdaloid nucleus +relationship: part_of UBERON:0006108 {source="NIFSTD"} ! corticomedial nuclear complex + +[Term] +id: UBERON:0002892 +name: medial amygdaloid nucleus +synonym: "medial amygalar nucleus" EXACT [BIRNLEX:2701] +synonym: "medial amygdala" RELATED [] +synonym: "medial amygdalar nucleus" RELATED [NeuroNames:241] +synonym: "medial amygdaloid nucleus principal part" RELATED [BAMS:MeA] +synonym: "medial nucleus of amygdala" EXACT [FMA:74046] +synonym: "medial nucleus of the amygdala" RELATED [BAMS:MEA] +synonym: "nucleus amygdalae medialis" RELATED [BTO:0002702] +synonym: "nucleus amygdaloideus medialis" RELATED LATIN [NeuroNames:241] +synonym: "nucleus medialis amygdalae" RELATED LATIN [NeuroNames:241] +xref: BAMS:Me +xref: BAMS:MEA +xref: BIRNLEX:2701 +xref: BM:Tel-Am-AME +xref: BTO:0002702 +xref: EMAPA:35543 +xref: EV:0100192 +xref: FMA:74046 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=241 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=241 {source="BIRNLEX:2701"} +xref: http://linkedlifedata.com/resource/umls/id/C0175217 +xref: MA:0002927 +xref: MBA:403 +xref: UMLS:C0175217 {source="BIRNLEX:2701"} +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0006108 {source="NIFSTD"} ! corticomedial nuclear complex + +[Term] +id: UBERON:0002893 +name: nucleus of lateral olfactory tract +comment: part of amygdala in FMA but this leads to inconsistency when combined with ABA partitions +synonym: "lateral olfactory tract nucleus" EXACT [FMA:61865] +synonym: "NLOT" EXACT ABBREVIATION [] +synonym: "nucleus of the lateral olfactory tract" RELATED [NeuroNames:242] +synonym: "nucleus of the lateral olfactory tract (ganser)" EXACT [BIRNLEX:2702] +synonym: "nucleus of the olfactory tract" RELATED [BAMS:LOT] +synonym: "nucleus of tractus olfactorius lateralis" RELATED LATIN [NeuroNames:242] +synonym: "nucleus striae olfactoriae lateralis" RELATED LATIN [NeuroNames:242] +xref: BAMS:LOT +xref: BAMS:NLOT +xref: BIRNLEX:2702 +xref: BM:Tel-NLOT +xref: DHBA:10309 +xref: DMBA:15951 +xref: EMAPA:35599 +xref: FMA:61865 +xref: HBA:4385 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=242 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=242 {source="BIRNLEX:2702"} +xref: http://linkedlifedata.com/resource/umls/id/C0175218 +xref: MBA:619 +xref: UMLS:C0175218 {source="BIRNLEX:2702"} +is_a: UBERON:0009663 ! telencephalic nucleus +intersection_of: UBERON:0002308 ! nucleus of brain +intersection_of: extends_fibers_into UBERON:0001888 ! lateral olfactory stria +intersection_of: part_of UBERON:0002894 ! olfactory cortex +relationship: extends_fibers_into UBERON:0001888 ! lateral olfactory stria +relationship: part_of UBERON:0002894 ! olfactory cortex + +[Term] +id: UBERON:0002894 +name: olfactory cortex +def: "Aggregate brain region defined as those areas of cerebral cortex receiving direct synaptic input from the olfactory bulb (Price, 1973). It usually includes the piriform cortex and sometimes other areas." [BIRNLEX:2707] +subset: pheno_slim +subset: uberon_slim +synonym: "archaeocortex" RELATED [BTO:0001446] +synonym: "archeocortex" RELATED [BTO:0001446] +synonym: "olfactory areas" RELATED [BAMS:OLF] +synonym: "olfactory lobe" RELATED [MA:0000193] +xref: BAMS:OLF +xref: BIRNLEX:2707 +xref: BTO:0001446 +xref: EHDAA2:0001289 +xref: EHDAA:5482 +xref: EMAPA:17779 +xref: FMA:276600 +xref: HBA:265504406 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2275 +xref: http://linkedlifedata.com/resource/umls/id/C0162434 +xref: MA:0000193 +xref: Olfactory:cortex +xref: UMLS:C0162434 {source="BIRNLEX:2707"} +xref: VHOG:0000325 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0005366 ! olfactory lobe +relationship: part_of UBERON:0000956 {source="VHOG"} ! cerebral cortex +relationship: part_of UBERON:0005366 {source="MA"} ! olfactory lobe + +[Term] +id: UBERON:0002895 +name: secondary olfactory cortex +def: "Brodmann's area 28; major gateway for neocortical input to the hippocampus; origin of the perforant pathway; a component of the medial temporal lobe memory system. (CSP) * The cytoarchitecturally well-defined area of multilaminate cerebral cortex on the medial aspect of the parahippocampal gyrus, immediately caudal to the olfactory cortex of the uncus. The entorhinal cortex is the origin of the major neural fiber system afferent to the hippocampus, the so-called PERFORANT PATHWAY. (Stedman, 25th ed)." [BIRNLEX:2709] +subset: uberon_slim +synonym: "entorhinal cortex" RELATED INCONSISTENT [FMA:72356] +synonym: "secondary olfactory areas" EXACT [BIRNLEX:2709] +synonym: "secondary olfactory cortex" EXACT [FMA:72356] +synonym: "secondary olfactory cortical area (carpenter)" EXACT [] +xref: BAMS:Ent +xref: BIRNLEX:2709 +xref: BTO:0004345 +xref: EMAPA:35313 +xref: EV:0100179 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2056 +xref: MA:0003117 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002894 {source="NIF"} ! olfactory cortex + +[Term] +id: UBERON:0002896 +name: telodiencephalic fissure +synonym: "fissura telo-diencephalica" RELATED LATIN [NeuroNames:28] +synonym: "TDF" BROAD ABBREVIATION [BIRNLEX:4001, NIFSTD:NeuroNames_abbrevSource] +synonym: "telo-diencephalic fissure" EXACT [FMA:83726] +xref: BAMS:tdf +xref: BIRNLEX:4001 +xref: FMA:83726 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=28 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=28 {source="BIRNLEX:4001"} +xref: http://linkedlifedata.com/resource/umls/id/C0262340 +xref: UMLS:C0262340 {source="BIRNLEX:4001"} +is_a: UBERON:0014466 {source="FMA"} ! subarachnoid fissure + +[Term] +id: UBERON:0002897 +name: cistern of lamina terminalis +synonym: "CISLT" BROAD ABBREVIATION [BIRNLEX:4002, NIFSTD:NeuroNames_abbrevSource] +synonym: "cistern of the lamina terminalis" RELATED [NeuroNames:29] +synonym: "cisterna lamina terminalis" EXACT [BIRNLEX:4002] +synonym: "cisterna laminae terminalis" RELATED LATIN [NeuroNames:29] +synonym: "lamina terminalis cistern" EXACT [FMA:74516] +xref: BAMS:cislt +xref: BIRNLEX:4002 +xref: FMA:74516 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=29 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=29 {source="BIRNLEX:4002"} +xref: http://linkedlifedata.com/resource/umls/id/C0228153 +xref: http://www.snomedbrowser.com/Codes/Details/12692002 +xref: NCIT:C32922 +xref: UMLS:C0228153 {source="ncithesaurus:Lamina_Terminalis_Cistern"} +xref: UMLS:C0228153 {source="BIRNLEX:4002"} +is_a: UBERON:0004050 ! subarachnoid cistern + +[Term] +id: UBERON:0002898 +name: chiasmatic cistern +def: "the region of the subarachnoid space that is located below and anterior to the optic chiasm" [ISBN:0-683-40008-8, MP:0009028] +subset: pheno_slim +subset: uberon_slim +synonym: "CCIS" BROAD ABBREVIATION [BIRNLEX:4003, NIFSTD:NeuroNames_abbrevSource] +synonym: "cisterna chiasmatica" EXACT [BIRNLEX:4003] +synonym: "cisterna chiasmatica" RELATED LATIN [http://en.wikipedia.org/wiki/Chiasmatic_cistern] +synonym: "cisterna chiasmatis" EXACT [BIRNLEX:4003] +xref: BAMS:ccis +xref: BIRNLEX:4003 +xref: Chiasmatic:cistern +xref: EMAPA:19057 +xref: FMA:74515 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=30 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=30 {source="BIRNLEX:4003"} +xref: http://linkedlifedata.com/resource/umls/id/C0228152 +xref: http://www.snomedbrowser.com/Codes/Details/47947006 +xref: NCIT:C32304 +xref: UMLS:C0228152 {source="ncithesaurus:Chiasmatic_Cistern"} +xref: UMLS:C0228152 {source="BIRNLEX:4003"} +is_a: UBERON:0004050 ! subarachnoid cistern + +[Term] +id: UBERON:0002899 +name: hippocampal sulcus +def: "The hippocampal sulcus, also known as the hippocampal fissure, is a sulcus that separates the dentate gyrus from the subiculum and the CA1 field in the hippocampus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Hippocampal_sulcus] +subset: uberon_slim +synonym: "dentate fissure" EXACT [FMA:83747] +synonym: "hippocampal fissure" EXACT [FMA:83747] +synonym: "hippocampal fissure (Gratiolet)" RELATED [NeuroNames:42] +synonym: "HIS" BROAD ABBREVIATION [BIRNLEX:4004, NIFSTD:NeuroNames_abbrevSource] +synonym: "sulcus hippocampalis" RELATED LATIN [http://en.wikipedia.org/wiki/Hippocampal_sulcus] +synonym: "sulcus hippocampi" EXACT [BIRNLEX:4004] +synonym: "sulcus hippocampi" RELATED LATIN [http://en.wikipedia.org/wiki/Hippocampal_sulcus] +xref: BAMS:hf +xref: BAMS:his +xref: BIRNLEX:4004 +xref: DHBA:10619 +xref: EMAPA:36471 +xref: FMA:83747 +xref: HBA:9394 +xref: Hippocampal:sulcus +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=42 {source="BIRNLEX:4004"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=42 +xref: http://linkedlifedata.com/resource/umls/id/C0228251 +xref: http://www.snomedbrowser.com/Codes/Details/369101000 +xref: MBA:1063 +xref: NCIT:C32743 +xref: UMLS:C0228251 {source="BIRNLEX:4004"} +xref: UMLS:C0228251 {source="ncithesaurus:Hippocampal_Fissure"} +is_a: UBERON:0008334 ! subarachnoid sulcus +intersection_of: UBERON:0008334 ! subarachnoid sulcus +intersection_of: adjacent_to UBERON:0001885 ! dentate gyrus of hippocampal formation +intersection_of: adjacent_to UBERON:0002191 ! subiculum +intersection_of: adjacent_to UBERON:0003881 ! CA1 field of hippocampus +relationship: adjacent_to UBERON:0001885 ! dentate gyrus of hippocampal formation +relationship: adjacent_to UBERON:0002191 ! subiculum +relationship: adjacent_to UBERON:0003881 ! CA1 field of hippocampus + +[Term] +id: UBERON:0002900 +name: transverse occipital sulcus +def: "The transverse occipital sulcus is a structure in the occipital lobe. The transverse occipital sulcus is continuous with the posterior end of the occipital ramus of the intraparietal sulcus, and runs across the upper part of the lobe, a short distance behind the parietoC6ccipital fissure." [http://en.wikipedia.org/wiki/Transverse_occipital_sulcus] +synonym: "sulcus occipitalis transversus" EXACT [BIRNLEX:4013] +synonym: "TOCS" BROAD ABBREVIATION [BIRNLEX:4013, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:tocs +xref: BIRNLEX:4013 +xref: BTO:0003786 +xref: DHBA:13228 +xref: FMA:83786 +xref: HBA:9388 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=145 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=145 {source="BIRNLEX:4013"} +xref: http://en.wikipedia.org/wiki/Transverse_occipital_sulcus +xref: http://linkedlifedata.com/resource/umls/id/C0262348 +xref: UMLS:C0262348 {source="BIRNLEX:4013"} +is_a: UBERON:0019303 ! occipital sulcus + +[Term] +id: UBERON:0002901 +name: posterior calcarine sulcus +synonym: "PCCS" BROAD ABBREVIATION [BIRNLEX:4015, NIFSTD:NeuroNames_abbrevSource] +synonym: "postcalcarine sulcus" EXACT [FMA:83787] +synonym: "posterior calcarine fissure" EXACT [FMA:83787] +synonym: "posterior part of calcarine sulcus" EXACT [FMA:83787] +synonym: "sulcus calcarinus posterior" EXACT [BIRNLEX:4015] +xref: BAMS:pccs +xref: BIRNLEX:4015 +xref: DHBA:10285 +xref: FMA:83787 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=149 {source="BIRNLEX:4015"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=149 +xref: http://linkedlifedata.com/resource/umls/id/C0262311 +xref: UMLS:C0262311 {source="BIRNLEX:4015"} +is_a: UBERON:0019303 ! occipital sulcus + +[Term] +id: UBERON:0002902 +name: occipital pole +def: "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole. [WP,unvetted]." [http://en.wikipedia.org/wiki/Occipital_pole] +subset: uberon_slim +synonym: "OCP" BROAD ABBREVIATION [BIRNLEX:4016, NIFSTD:NeuroNames_abbrevSource] +synonym: "polus occipitalis" EXACT LATIN [BIRNLEX:4016] +synonym: "polus occipitalis cerebri" RELATED [BTO:0001868] +xref: BAMS:OCP +xref: BAMS:OcP +xref: BAMS:ocp +xref: BIRNLEX:4016 +xref: BTO:0001868 +xref: DHBA:12149 +xref: FMA:74892 +xref: HBA:4181 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=141 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=141 {source="BIRNLEX:4016"} +xref: http://linkedlifedata.com/resource/umls/id/C0228217 +xref: http://www.snomedbrowser.com/Codes/Details/314160003 +xref: Occipital:pole +xref: UMLS:C0228217 {source="BIRNLEX:4016"} +is_a: UBERON:0009899 ! pole of cerebral hemisphere +intersection_of: UBERON:0009899 ! pole of cerebral hemisphere +intersection_of: part_of UBERON:0002021 ! occipital lobe +relationship: part_of UBERON:0002021 {source="BTO"} ! occipital lobe + +[Term] +id: UBERON:0002903 +name: lunate sulcus +def: "The lunate sulcus is a structure in the occipital lobe. It is not present in all individuals." [http://en.wikipedia.org/wiki/Lunate_sulcus] +synonym: "lunate fissure" EXACT [FMA:83788] +synonym: "LUS" BROAD ABBREVIATION [BIRNLEX:4017, NIFSTD:NeuroNames_abbrevSource] +synonym: "sulcus lunatus" EXACT [BIRNLEX:4017] +synonym: "sulcus simialis" EXACT [BIRNLEX:4017] +xref: BAMS:lus +xref: BIRNLEX:4017 +xref: BM:Tel-Cx-LUS +xref: DHBA:146034812 +xref: FMA:83788 +xref: HBA:9390 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=150 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=150 {source="BIRNLEX:4017"} +xref: http://linkedlifedata.com/resource/umls/id/C0262278 +xref: Lunate:sulcus +xref: NCIT:C33019 +xref: UMLS:C0262278 {source="ncithesaurus:Lunate_Sulcus"} +xref: UMLS:C0262278 {source="BIRNLEX:4017"} +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus +is_a: UBERON:0019303 ! occipital sulcus + +[Term] +id: UBERON:0002904 +name: lateral occipital sulcus +def: "In the occipital lobe, the lateral occipital sulcus extends from behind forward, and divides the lateral surface of the occipital lobe into a superior and an inferior gyrus, which are continuous in front with the parietal and temporal lobes. [WP,unvetted]." [http://en.wikipedia.org/wiki/Lateral_occipital_sulcus] +subset: uberon_slim +synonym: "lateral occipital sulcus (H)" RELATED [NeuroNames:143] +synonym: "LOCS" BROAD ABBREVIATION [BIRNLEX:4018, NIFSTD:NeuroNames_abbrevSource] +synonym: "sulcus occipitalis lateralis" EXACT [BIRNLEX:4018] +xref: BAMS:locs +xref: BIRNLEX:4018 +xref: FMA:83785 +xref: HBA:9389 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=143 {source="BIRNLEX:4018"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=143 +xref: http://en.wikipedia.org/wiki/Lateral_occipital_sulcus +xref: http://linkedlifedata.com/resource/umls/id/C0228229 +xref: http://linkedlifedata.com/resource/umls/id/C1289641 +xref: http://www.snomedbrowser.com/Codes/Details/369219003 +xref: NCIT:C32952 +xref: UMLS:C0228229 {source="ncithesaurus:Lateral-occipital_Sulcus"} +xref: UMLS:C0228229 {source="BIRNLEX:4018"} +xref: UMLS:C1289641 {source="BIRNLEX:4018"} +is_a: UBERON:0013118 ! sulcus of brain + +[Term] +id: UBERON:0002905 +name: intralingual sulcus +def: "A groove located within the boundaries of the lingual gyrus in the human. Identified by dissection, it is oriented parallel to the inferior margin of the occipital lobe ( Ono-1990; Duvernoy-1992 )." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=151] +synonym: "ILS" BROAD ABBREVIATION [BIRNLEX:4019, NIFSTD:NeuroNames_abbrevSource] +synonym: "sulcus intralingualis" EXACT [BIRNLEX:4019] +xref: BAMS:ils +xref: BIRNLEX:4019 +xref: FMA:83789 +xref: HBA:9397 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=151 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=151 {source="BIRNLEX:4019"} +xref: http://linkedlifedata.com/resource/umls/id/C0694595 +xref: UMLS:C0694595 {source="BIRNLEX:4019"} +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus +is_a: UBERON:0019303 ! occipital sulcus +relationship: part_of UBERON:0002943 {source="cjm"} ! lingual gyrus + +[Term] +id: UBERON:0002906 +name: anterior occipital sulcus +synonym: "AOCS" BROAD ABBREVIATION [BIRNLEX:4023, NIFSTD:NeuroNames_abbrevSource] +synonym: "ascending limb of the inferior temporal sulcus" EXACT [BIRNLEX:4023] +synonym: "posterior inferior temporal sulcus" EXACT [BIRNLEX:4023] +synonym: "sulci occipitales superiores" EXACT [BIRNLEX:4023] +synonym: "sulcus annectans" EXACT [BIRNLEX:4023] +synonym: "sulcus occipitalis anterior" EXACT [BIRNLEX:4023] +xref: BAMS:aocs +xref: BIRNLEX:4023 +xref: DHBA:146034784 +xref: FMA:75758 +xref: HBA:9385 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=142 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=142 {source="BIRNLEX:4023"} +xref: http://linkedlifedata.com/resource/umls/id/C0262194 +xref: UMLS:C0262194 {source="BIRNLEX:4023"} +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus +is_a: UBERON:0019303 ! occipital sulcus + +[Term] +id: UBERON:0002907 +name: superior postcentral sulcus +synonym: "postcentral dimple" EXACT [FMA:83775] +synonym: "postcentral sulcus (Peele)" RELATED [NeuroNames:100] +synonym: "SPCS" BROAD ABBREVIATION [BIRNLEX:4025, NIFSTD:NeuroNames_abbrevSource] +synonym: "sulcus postcentralis superior" EXACT [BIRNLEX:4025] +xref: BAMS:spcs +xref: BIRNLEX:4025 +xref: DHBA:10215 +xref: FMA:83775 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=100 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=100 {source="BIRNLEX:4025"} +xref: http://linkedlifedata.com/resource/umls/id/C0262337 +xref: UMLS:C0262337 {source="BIRNLEX:4025"} +is_a: UBERON:0013118 ! sulcus of brain + +[Term] +id: UBERON:0002908 +name: subparietal sulcus +synonym: "SBPS" BROAD ABBREVIATION [BIRNLEX:4026, NIFSTD:NeuroNames_abbrevSource] +synonym: "splenial sulcus" EXACT [FMA:83777] +synonym: "sulcus subparietalis" EXACT [BIRNLEX:4026] +synonym: "suprasplenial sulcus" EXACT [FMA:83777] +xref: BAMS:sbps +xref: BIRNLEX:4026 +xref: BM:Tel-Cx-SPS +xref: FMA:83777 +xref: HBA:9376 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=102 {source="BIRNLEX:4026"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=102 +xref: http://linkedlifedata.com/resource/umls/id/C0228216 +xref: http://linkedlifedata.com/resource/umls/id/C1281079 +xref: http://www.snomedbrowser.com/Codes/Details/279352008 +xref: UMLS:C0228216 {source="BIRNLEX:4026"} +xref: UMLS:C1281079 {source="BIRNLEX:4026"} +is_a: UBERON:0013118 ! sulcus of brain + +[Term] +id: UBERON:0002909 +name: posterior subcentral sulcus +synonym: "PSCS" BROAD ABBREVIATION [BIRNLEX:4027, NIFSTD:NeuroNames_abbrevSource] +synonym: "sulcus subcentralis posterior" EXACT [BIRNLEX:4027] +xref: BAMS:pscs +xref: BIRNLEX:4027 +xref: FMA:83778 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=103 {source="BIRNLEX:4027"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=103 +xref: http://linkedlifedata.com/resource/umls/id/C0262318 +xref: UMLS:C0262318 {source="BIRNLEX:4027"} +is_a: UBERON:0013118 ! sulcus of brain + +[Term] +id: UBERON:0002910 +name: posterior ascending limb of lateral sulcus +def: "One of two branches of the lateral fissure at its posterior terminus identified by dissection in the human. The other is the terminal descending limb of the lateral fissure ( Ono-1990 ). It is not found in the macaque ( Martin-2000 ), the rat ( Swanson-2004 ) or the mouse ( Hof-2000 )." [NeuroNames:104] +synonym: "ascending terminal ramus of sylvian fissure" EXACT [] +synonym: "PALS" BROAD ABBREVIATION [BIRNLEX:4028, NIFSTD:NeuroNames_abbrevSource] +synonym: "posterior ascending limb of lateral fissure" EXACT [FMA:83761] +synonym: "posterior ramus of lateral cerebral sulcus" EXACT [FMA:83761] +synonym: "ramus posterior ascendens fissurae lateralis" EXACT [BIRNLEX:4028] +synonym: "ramus posterior sulci lateralis cerebri" EXACT LATIN [FMA:83761, FMA:TA] +synonym: "sulcus lateralis, ramus posterior" RELATED LATIN [NeuroNames:104] +synonym: "terminal ascending limb of sylvian fissure" RELATED [NeuroNames:104] +synonym: "terminal ascending limb of the lateral fissure" RELATED [NeuroNames:104] +xref: BAMS:pals +xref: BIRNLEX:4028 +xref: FMA:83761 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=104 {source="BIRNLEX:4028"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=104 +xref: http://linkedlifedata.com/resource/umls/id/C0262310 +xref: UMLS:C0262310 {source="BIRNLEX:4028"} +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus +relationship: part_of UBERON:0002721 {source="NIFSTD"} ! lateral sulcus + +[Term] +id: UBERON:0002911 +name: parietal operculum +def: "The parietal operculum, forming the superior bank of the sylvian fissure, as studied in the cat, contains the secondary somatosensory representation, 'S-II', and a second somatotopic representation (parietal ventral, or PV). Anatomically, primate S-II receives inputs from area 3 and area 1, and projects to PV and area 7. PV has projections to area 5 and premotor areas. [WP,unvetted]." [http://en.wikipedia.org/wiki/Parietal_operculum] +subset: uberon_slim +synonym: "operculum parietale" EXACT LATIN [BIRNLEX:4029] +synonym: "PAO" BROAD ABBREVIATION [BIRNLEX:4029, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:pao +xref: BAMS:PaOp +xref: BIRNLEX:4029 +xref: DHBA:13230 +xref: FMA:74889 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=96 {source="BIRNLEX:4029"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=96 +xref: http://linkedlifedata.com/resource/umls/id/C0228265 +xref: http://linkedlifedata.com/resource/umls/id/C1284612 +xref: http://www.snomedbrowser.com/Codes/Details/362353000 +xref: Parietal:operculum +xref: UMLS:C0228265 {source="BIRNLEX:4029"} +xref: UMLS:C1284612 {source="BIRNLEX:4029"} +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0010262 ! operculum of brain + +[Term] +id: UBERON:0002912 +name: marginal sulcus +def: "The marginal sulcus is the portion of the cingulate sulcus adjacent to the paracentral lobule and the precuneus. It is sometimes known as the 'marginal part of the cingulate sulcus'. [WP,unvetted]." [http://en.wikipedia.org/wiki/Marginal_sulcus] +subset: uberon_slim +synonym: "marginal branch of cingulate sulcus" EXACT [FMA:83773] +synonym: "marginal ramus of cingulate sulcus" EXACT [FMA:83773] +synonym: "MS" BROAD ABBREVIATION [BIRNLEX:4030, NIFSTD:NeuroNames_abbrevSource] +synonym: "pars marginalis sulci cinguli" RELATED LATIN [NeuroNames:98] +synonym: "ramus marginalis sulci cingulati" EXACT [BIRNLEX:4030] +synonym: "ramus marginalis sulci cinguli" EXACT LATIN [FMA:83773, FMA:TA] +synonym: "ramus marginalis; sulcus marginalis" RELATED LATIN [http://en.wikipedia.org/wiki/Marginal_sulcus] +synonym: "sulcus marginalis" EXACT LATIN [FMA:83773, FMA:TA] +xref: BIRNLEX:4030 +xref: FMA:83773 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=98 {source="BIRNLEX:4030"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=98 +xref: http://linkedlifedata.com/resource/umls/id/C0259792 +xref: http://www.snomedbrowser.com/Codes/Details/279351001 +xref: Marginal:sulcus +xref: UMLS:C0259792 {source="BIRNLEX:4030"} +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus +relationship: part_of UBERON:0002710 {source="FMA"} ! cingulate sulcus + +[Term] +id: UBERON:0002913 +name: intraparietal sulcus +def: "The intraparietal sulcus (IPS) is located on the lateral surface of the parietal lobe, and consists of an oblique and a horizontal portion. The IPS contains a series of functionally distinct subregions that have been intensively investigated using both single cell neurophysiology in primates and human functional neuroimaging. Its principal functions are related to perceptual-motor coordination (for directing eye movements and reaching) and visual attention. The IPS is also thought to play a role in other functions, including processing symbolic numerical information, visuospatial working memory and interpreting the intent of others. [WP,unvetted]." [http://en.wikipedia.org/wiki/Intraparietal_sulcus] +subset: uberon_slim +synonym: "interparietal fissure" EXACT [FMA:83772] +synonym: "intraparietal fissure" EXACT [FMA:83772] +synonym: "intraparietal sulcus of Turner" RELATED [BTO:0003787] +synonym: "ITPS" BROAD ABBREVIATION [BIRNLEX:4031, NIFSTD:NeuroNames_abbrevSource] +synonym: "sulcus interparietalis" EXACT [BIRNLEX:4031] +synonym: "sulcus intraparietalis" RELATED [BTO:0003787] +synonym: "sulcus intraparietalis" RELATED LATIN [http://en.wikipedia.org/wiki/Intraparietal_sulcus] +synonym: "Turner sulcus" RELATED [BTO:0003787] +xref: BAMS:ips +xref: BAMS:itps +xref: BIRNLEX:4031 +xref: BM:Tel-Cx-IPS +xref: BTO:0003787 +xref: DHBA:10620 +xref: FMA:83772 +xref: HBA:9372 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=97 {source="BIRNLEX:4031"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=97 +xref: http://linkedlifedata.com/resource/umls/id/C0228213 +xref: http://linkedlifedata.com/resource/umls/id/C1281069 +xref: http://www.snomedbrowser.com/Codes/Details/279338006 +xref: Intraparietal:sulcus +xref: NCIT:C32879 +xref: UMLS:C0228213 {source="BIRNLEX:4031"} +xref: UMLS:C0228213 {source="ncithesaurus:Intraparietal_Sulcus"} +xref: UMLS:C1281069 {source="BIRNLEX:4031"} +is_a: UBERON:0035927 ! sulcus of parietal lobe + +[Term] +id: UBERON:0002914 +name: inferior postcentral sulcus +synonym: "IPCS" BROAD ABBREVIATION [BIRNLEX:4032, NIFSTD:NeuroNames_abbrevSource] +synonym: "sulcus postcentralis inferior" EXACT [BIRNLEX:4032] +xref: BAMS:ipcs +xref: BAMS:poci +xref: BIRNLEX:4032 +xref: FMA:83776 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=101 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=101 {source="BIRNLEX:4032"} +xref: http://linkedlifedata.com/resource/umls/id/C0262256 +xref: UMLS:C0262256 {source="BIRNLEX:4032"} +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus + +[Term] +id: UBERON:0002915 +name: postcentral sulcus of parietal lobe +def: "The postcentral sulcus of the parietal lobe lies parallel to, and behind, the central sulcus in the human brain. (A sulcus is one of the prominent grooves on the surface of the brain. ) The postcentral sulcus divides the postcentral gyrus from the remainder of the parietal lobe. [WP,unvetted]." [http://en.wikipedia.org/wiki/Postcentral_sulcus] +subset: uberon_slim +synonym: "POCS" BROAD ABBREVIATION [BIRNLEX:4033, NIFSTD:NeuroNames_abbrevSource] +synonym: "postcentral fissure of cerebral hemisphere" EXACT [FMA:83774] +synonym: "postcentral fissure-1" EXACT [FMA:83774] +synonym: "postcentral sulcus" EXACT [FMA:83774] +synonym: "structure of postcentral sulcus" EXACT [BIRNLEX:4033] +synonym: "sulcus postcentralis" EXACT [BIRNLEX:4033] +synonym: "sulcus postcentralis" RELATED LATIN [http://en.wikipedia.org/wiki/Postcentral_sulcus] +xref: BAMS:pocs +xref: BIRNLEX:4033 +xref: BM:Tel-Cx-PoCS +xref: DHBA:10627 +xref: FMA:83774 +xref: HBA:9371 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=99 {source="BIRNLEX:4033"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=99 +xref: http://linkedlifedata.com/resource/umls/id/C0228212 +xref: http://linkedlifedata.com/resource/umls/id/C1281070 +xref: http://www.snomedbrowser.com/Codes/Details/279339003 +xref: NCIT:C33347 +xref: Postcentral:sulcus +xref: UMLS:C0228212 {source="BIRNLEX:4033"} +xref: UMLS:C0228212 {source="ncithesaurus:Postcentral_Sulcus"} +xref: UMLS:C1281070 {source="BIRNLEX:4033"} +is_a: UBERON:0035927 ! sulcus of parietal lobe + +[Term] +id: UBERON:0002916 +name: central sulcus +def: "The central sulcus is a fold in the cerebral cortex of brains in vertebrates. Also called the central fissure, it was originally called the fissure of Rolando or the Rolandic fissure, after Luigi Rolando. The central sulcus is a prominent landmark of the brain, separating the parietal lobe from the frontal lobe and the primary motor cortex from the primary somatosensory cortex. [WP,unvetted]." [http://en.wikipedia.org/wiki/Central_sulcus] +subset: uberon_slim +synonym: "central cerebral sulcus" EXACT [FMA:83752] +synonym: "central fissure" EXACT [FMA:83752] +synonym: "central sulcus of Rolando" EXACT [] +synonym: "CS" BROAD ABBREVIATION [BIRNLEX:4035, NIFSTD:NeuroNames_abbrevSource] +synonym: "fissure of Rolando" EXACT [] +synonym: "rolandic fissure" EXACT [BIRNLEX:4035] +synonym: "sulcus centralis" EXACT [BIRNLEX:4035] +synonym: "sulcus centralis (rolandi)" EXACT [BIRNLEX:4035] +synonym: "sulcus centralis cerebri" EXACT [BIRNLEX:4035] +synonym: "sulcus centralis cerebri" EXACT LATIN [http://en.wikipedia.org/wiki/Central_sulcus] +synonym: "sulcus of Rolando" EXACT [] +xref: BAMS:cs +xref: BIRNLEX:4035 +xref: BM:Tel-Cx-CS +xref: Central:sulcus +xref: DHBA:10614 +xref: FMA:83752 +xref: HBA:9403 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=48 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=48 {source="BIRNLEX:4035"} +xref: http://linkedlifedata.com/resource/umls/id/C0228188 +xref: http://linkedlifedata.com/resource/umls/id/C1281071 +xref: http://www.snomedbrowser.com/Codes/Details/279340001 +xref: NCIT:C32280 +xref: OpenCyc:Mx4rvjMKxpwpEbGdrcN5Y29ycA +xref: UMLS:C0228188 {source="BIRNLEX:4035"} +xref: UMLS:C0228188 {source="ncithesaurus:Central_Sulcus_of_Rolando"} +xref: UMLS:C1281071 {source="BIRNLEX:4035"} +is_a: UBERON:0013118 ! sulcus of brain +intersection_of: UBERON:0013118 ! sulcus of brain +intersection_of: connects UBERON:0001870 ! frontal cortex +intersection_of: connects UBERON:0001872 ! parietal lobe +relationship: connects UBERON:0001870 ! frontal cortex +relationship: connects UBERON:0001872 ! parietal lobe +relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex + +[Term] +id: UBERON:0002917 +name: obsolete regional part of inferior colliculus +def: "A regional part of brain that is part of a inferior colliculus [Automatically generated definition]." [OBOL:automatic] +subset: non_informative +synonym: "inferior colliculus segment" EXACT [FMA:77871] +synonym: "segment of inferior colliculus" EXACT [BIRNLEX:4036] +is_obsolete: true +consider: BIRNLEX:4036 +consider: FMA:77871 + +[Term] +id: UBERON:0002918 +name: medial parabrachial nucleus +def: "The Medial parabrachial nucleus is a nucleus of the pons which constitutes part of the pneumotaxic center. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted]." [http://en.wikipedia.org/wiki/Medial_parabrachial_nucleus] +subset: uberon_slim +synonym: "nucleus parabrachialis medialis" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_parabrachial_nucleus] +synonym: "parabrachial nucleus, medial division" RELATED [NeuroNames:587] +synonym: "parabrachial nucleus, medial part" RELATED [NeuroNames:587] +xref: BAMS:MPB +xref: BIRNLEX:4038 +xref: DHBA:12487 +xref: DMBA:16850 +xref: FMA:72480 +xref: HBA:9153 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=587 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=587 {source="BIRNLEX:4038"} +xref: http://en.wikipedia.org/wiki/Medial_parabrachial_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0175446 +xref: MBA:890 +xref: UMLS:C0175446 {source="BIRNLEX:4038"} +is_a: UBERON:0007634 ! parabrachial nucleus +disjoint_from: UBERON:0003007 {source="lexical"} ! lateral parabrachial nucleus +relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum + +[Term] +id: UBERON:0002919 +name: anterior parolfactory sulcus +synonym: "APS" BROAD ABBREVIATION [BIRNLEX:4039, NIFSTD:NeuroNames_abbrevSource] +synonym: "paraolfactory sulci" EXACT PLURAL [BIRNLEX:4039] +synonym: "paraolfactory sulcus" EXACT [FMA:83744] +synonym: "sulcus parolfactorius anterior" EXACT [BIRNLEX:4039] +xref: BAMS:aps +xref: BIRNLEX:4039 +xref: DHBA:146034824 +xref: FMA:83744 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=37 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=37 {source="BIRNLEX:4039"} +xref: http://linkedlifedata.com/resource/umls/id/C0262196 +xref: UMLS:C0262196 {source="BIRNLEX:4039"} +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus +disjoint_from: UBERON:0002923 {source="lexical"} ! posterior parolfactory sulcus + +[Term] +id: UBERON:0002920 +name: callosal sulcus +def: "The callosal sulcus is a sulcus in the brain between the cingulate gyrus and corpus callosum, below the longitudinal cerebral fissure. [WP,unvetted]." [http://en.wikipedia.org/wiki/Callosal_sulcus] +subset: uberon_slim +synonym: "CAS" BROAD ABBREVIATION [BIRNLEX:4040, NIFSTD:NeuroNames_abbrevSource] +synonym: "sulcus corporis callosi" EXACT [BIRNLEX:4040] +synonym: "sulcus corporis callosi" RELATED LATIN [http://en.wikipedia.org/wiki/Callosal_sulcus] +synonym: "sulcus of corpus callosum" EXACT [FMA:83743] +xref: BAMS:cas +xref: BIRNLEX:4040 +xref: Callosal:sulcus +xref: DHBA:10613 +xref: FMA:83743 +xref: HBA:9404 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=36 {source="BIRNLEX:4040"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=36 +xref: http://linkedlifedata.com/resource/umls/id/C0262204 +xref: http://www.snomedbrowser.com/Codes/Details/279349000 +xref: UMLS:C0262204 {source="BIRNLEX:4040"} +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus + +[Term] +id: UBERON:0002921 +name: longitudinal fissure +def: "The deep groove which separates the two hemispheres of the vertebrate brain. The falx cerebri, a dural brain covering, lies within the medial longitudinal fissure. [WP,unvetted]." [http://en.wikipedia.org/wiki/Medial_longitudinal_fissure] +subset: pheno_slim +subset: uberon_slim +synonym: "fissura interhemispherica" EXACT [BIRNLEX:4041] +synonym: "fissura longitudinalis cerebrales" EXACT [BIRNLEX:4041] +synonym: "fissura longitudinalis cerebri" EXACT [BIRNLEX:4041] +synonym: "fissura longitudinalis magna" EXACT [BIRNLEX:4041] +synonym: "hemispheric sulcus" EXACT [FMA:83727] +synonym: "interhemispheric fissure" EXACT [FMA:83727] +synonym: "LF" BROAD ABBREVIATION [BIRNLEX:4041, NIFSTD:NeuroNames_abbrevSource] +synonym: "longitudinal cerebral fissure" EXACT [FMA:83727] +synonym: "longitudinal fissure of hemisphere" EXACT [BIRNLEX:4041] +synonym: "longitudinal fissure of the cerebrum" EXACT [BIRNLEX:4041] +synonym: "longitudinal sulcus" EXACT [FMA:83727] +synonym: "medial longitudinal fissure" EXACT [FMA:83727] +synonym: "sagittal fissure" EXACT [FMA:83727] +xref: BAMS:lf +xref: BAMS:lfh +xref: BIRNLEX:4041 +xref: DHBA:10622 +xref: FMA:83727 +xref: HBA:9401 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=35 {source="BIRNLEX:4041"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=35 +xref: http://en.wikipedia.org/wiki/Medial_longitudinal_fissure +xref: http://linkedlifedata.com/resource/umls/id/C0228186 +xref: http://www.snomedbrowser.com/Codes/Details/369225004 +xref: NCIT:C33005 +xref: OpenCyc:Mx4rwJlWu5wpEbGdrcN5Y29ycA +xref: UMLS:C0228186 {source="ncithesaurus:Longitudinal_Fissure"} +xref: UMLS:C0228186 {source="BIRNLEX:4041"} +is_a: UBERON:0014466 {source="FMA"} ! subarachnoid fissure + +[Term] +id: UBERON:0002922 +name: olfactory trigone +def: "A small triangular area in front of the anterior perforated substance. Its apex, directed forward, occupies the posterior part of the olfactory sulcus, and is brought into view by throwing back the olfactory tract (adapted from Wikipedia)" [BIRNLEX:4042] +subset: uberon_slim +synonym: "OLT" BROAD ABBREVIATION [BIRNLEX:4042, NIFSTD:NeuroNames_abbrevSource] +synonym: "trigonum olfactorium" EXACT [BIRNLEX:4042] +synonym: "trigonum olfactorium" RELATED LATIN [http://en.wikipedia.org/wiki/Olfactory_trigone] +xref: BAMS:olt +xref: BAMS:OTr +xref: BIRNLEX:4042 +xref: FMA:74883 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=34 {source="BIRNLEX:4042"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=34 +xref: http://linkedlifedata.com/resource/umls/id/C0228279 +xref: http://www.snomedbrowser.com/Codes/Details/369102007 +xref: NCIT:C33813 +xref: Olfactory:trigone +xref: UMLS:C0228279 {source="BIRNLEX:4042"} +xref: UMLS:C0228279 {source="ncithesaurus:Trigonum_Olfactorium"} +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0005366 {source="BTO-def"} ! olfactory lobe + +[Term] +id: UBERON:0002923 +name: posterior parolfactory sulcus +synonym: "PPOS" BROAD ABBREVIATION [BIRNLEX:4043, NIFSTD:NeuroNames_abbrevSource] +synonym: "sulcus parolfactorius posterior" RELATED LATIN [NeuroNames:38] +xref: BAMS:ppos +xref: BAMS:pps +xref: BIRNLEX:4043 +xref: DHBA:146034828 +xref: FMA:83745 +xref: HBA:9369 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=38 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=38 {source="BIRNLEX:4043"} +xref: http://linkedlifedata.com/resource/umls/id/C0262316 +xref: UMLS:C0262316 {source="BIRNLEX:4043"} +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus + +[Term] +id: UBERON:0002924 +name: terminal nerve +def: "The terminal nerve, located anterior to cranial nerve I, is comprised of a group of cells with somata adjacent to the olfactory bulb and processes that extend anteriorly to the olfactory epithelium and posteriorly to the telencephalon. In teleost fish an additional group of axons extends along the optic tract and delivers putative neuromodulators to the retina. It is thought to develop from cranial neural crest." [http://en.wikipedia.org/wiki/Terminal_nerve, http://www.ncbi.nlm.nih.gov/pubmed/15821344, ZFIN:ZDB-PUB-041202-1] +comment: http://www.ncbi.nlm.nih.gov/pubmed/2286018 state: 'The presence of an additional cranial nerve (the nervus terminalis or cranial nerve zero) is well documented in many non-human vertebrate species. However, its existence in the adult human has been disputed. The present study focused on the structure and incidence of this nerve in the adult human brain. The nerve was examined post-mortem in 10 adult brains using dissection microscopy, light microscopy, transmission electron microscopy, and immunohistochemistry. In all specimens, the nervus terminalis was identified bilaterally as a microscopic plexus of unmyelinated peripheral nerve fascicles in the subarachnoid space covering the gyrus rectus of the orbital surface of the frontal lobes. The plexus appeared in the region of the cribriform plate of the ethmoid and coursed posteriorly to the vicinity of the olfactory trigone, medial olfactory gyrus, and lamina terminalis. We conclude that the terminal nerve is a common finding in the adult human brain, confirming early light microscopic reports.' +subset: efo_slim +subset: uberon_slim +synonym: "cranial nerve 0" EXACT [http://en.wikipedia.org/wiki/Terminal_nerve] +synonym: "cranial nerve zero" EXACT [http://en.wikipedia.org/wiki/Terminal_nerve] +synonym: "nervus terminalis" EXACT [ZFA:0001356] +synonym: "terminalis" BROAD [ISBN:0471888893] +synonym: "terminalis nerve" EXACT [ISBN:0471888893] +synonym: "TRN" BROAD ABBREVIATION [BIRNLEX:4044, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:tn +xref: BAMS:trn +xref: BIRNLEX:4044 +xref: EFO:0003678 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=33 {source="BIRNLEX:4044"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=33 +xref: http://linkedlifedata.com/resource/umls/id/C0262346 +xref: http://linkedlifedata.com/resource/umls/id/C1185749 +xref: MBA:885 +xref: TAO:0001356 +xref: Terminal:nerve +xref: UMLS:C0262346 {source="BIRNLEX:4044"} +xref: UMLS:C1185749 {source="BIRNLEX:4044"} +xref: ZFA:0001356 +is_a: UBERON:0001785 {source="ZFA"} ! cranial nerve +relationship: develops_from UBERON:0003099 {source="ISBN:0471888893"} ! cranial neural crest +relationship: innervates UBERON:0001706 {source="ISBN:0471888893"} ! nasal septum + +[Term] +id: UBERON:0002925 +name: trigeminal nucleus +def: "A nucleus of brain that is part of a trigeminal nuclear complex." [OBOL:automatic] +subset: uberon_slim +synonym: "nucleus mesencephalicus nervi trigemini" RELATED [BTO:0001074] +synonym: "nucleus mesencephalicus trigeminalis" RELATED [BTO:0001074] +synonym: "nucleus of trigeminal nuclear complex" EXACT [FMA:71247] +synonym: "nucleus tractus mesencephali nervi trigeminalis" RELATED [BTO:0001074] +synonym: "trigeminal nuclear complex nucleus" EXACT [FMA:71247] +synonym: "trigeminal nucleus" EXACT [FMA:71248] +synonym: "trigeminal V nucleus" EXACT [MA:0001028] +xref: BM:V +xref: BTO:0001074 +xref: CALOHA:TS-2077 +xref: EMAPA:35883 +xref: EV:0100271 +xref: FMA:71247 +xref: GAID:604 +xref: http://linkedlifedata.com/resource/umls/id/C0040999 +xref: http://www.snomedbrowser.com/Codes/Details/280164007 +xref: MA:0001028 +xref: MESH:D014278 +xref: NCIT:C12807 +xref: nifext:11 +xref: UMLS:C0040999 {source="ncithesaurus:Trigeminal_Nucleus"} +xref: VHOG:0001353 +is_a: UBERON:0000126 ! cranial nerve nucleus +intersection_of: UBERON:0002308 ! nucleus of brain +intersection_of: part_of UBERON:0007641 ! trigeminal nuclear complex +relationship: extends_fibers_into UBERON:0001645 ! trigeminal nerve +relationship: part_of UBERON:0007641 ! trigeminal nuclear complex + +[Term] +id: UBERON:0002926 +name: gustatory epithelium +def: "A sensory epithelium that is part of a gustatory system." [OBOL:automatic] +xref: FMA:62412 +xref: nifext:12 +is_a: UBERON:0006934 ! sensory epithelium +intersection_of: UBERON:0006934 ! sensory epithelium +intersection_of: part_of UBERON:0001033 ! gustatory system +relationship: part_of UBERON:0000012 {source="NIFSTD"} ! somatic nervous system +relationship: part_of UBERON:0001033 ! gustatory system + +[Term] +id: UBERON:0002928 +name: dentate gyrus polymorphic layer +def: "A cellular layer of the dentate gyrus enclosed by the granule cell layer. A number of cell types are located in the polymorphic layer but the most prominent is the mossy cell." [http://orcid.org/0000-0002-6601-2165, PMCID:PMC2492885] +synonym: "CA4" RELATED DUBIOUS [http://www.ncbi.nlm.nih.gov/pubmed/17765709] +synonym: "polymorph layer of the dentate gyrus" RELATED [BAMS:PoDG] +xref: BAMS:po +xref: BAMS:PoDG +xref: BIRNLEX:4128 +xref: EMAPA:35280 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2123 +xref: MA:0002864 +xref: MBA:10704 +xref: NLX:42439 +is_a: UBERON:0002304 ! layer of dentate gyrus +intersection_of: UBERON:0002304 ! layer of dentate gyrus +intersection_of: immediately_deep_to UBERON:0005381 ! dentate gyrus granule cell layer +relationship: immediately_deep_to UBERON:0005381 ! dentate gyrus granule cell layer + +[Term] +id: UBERON:0002929 +name: dentate gyrus pyramidal layer +xref: EMAPA:37515 {source="MA:th"} +xref: MA:0000948 +is_a: UBERON:0002304 ! layer of dentate gyrus + +[Term] +id: UBERON:0002930 +name: tectopontine tract +synonym: "fibrae tectopontinae" EXACT LATIN [FMA:72505, FMA:TA] +synonym: "tectopontine fibers" EXACT [FMA:72505] +synonym: "tectopontine fibres" EXACT [FMA:72505] +synonym: "tractus tectopontinus" RELATED LATIN [NeuroNames:612] +xref: BIRNLEX:701 +xref: DHBA:12364 +xref: FMA:72505 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=612 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=612 {source="BIRNLEX:701"} +xref: http://linkedlifedata.com/resource/umls/id/C0228403 +xref: http://www.snomedbrowser.com/Codes/Details/3301002 +xref: UMLS:C0228403 {source="BIRNLEX:701"} +is_a: UBERON:0007702 {source="FMA"} ! tract of brain +relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum + +[Term] +id: UBERON:0002931 +name: dorsal septal nucleus +synonym: "nucleus dorsalis septi" RELATED LATIN [NeuroNames:260] +synonym: "nucleus septalis dorsalis" RELATED LATIN [NeuroNames:260] +xref: BAMS:DS +xref: BIRNLEX:704 +xref: FMA:61877 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=260 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=260 {source="BIRNLEX:704"} +xref: http://linkedlifedata.com/resource/umls/id/C0262226 +xref: UMLS:C0262226 {source="BIRNLEX:704"} +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0002663 {source="NIFSTD"} ! septal nuclear complex + +[Term] +id: UBERON:0002932 +name: trapezoid body +def: "Bundles of axons traversing the pontine tegmentum oriented in the mediolateral direction. These fibers are related to the auditory pathway. Nuclei are embedded within these fibers." [BIRNLEX:707] +subset: uberon_slim +synonym: "corpus trapezoides" RELATED LATIN [NeuroNames:594] +synonym: "corpus trapezoideum" RELATED LATIN [http://en.wikipedia.org/wiki/Trapezoid_body] +synonym: "trapezoid body (Treviranus)" RELATED [NeuroNames:594] +synonym: "TZ" BROAD ABBREVIATION [BIRNLEX:707, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:TB +xref: BAMS:tb +xref: BAMS:tz +xref: BIRNLEX:707 +xref: BM:TB +xref: DHBA:12796 +xref: FMA:72487 +xref: HBA:9197 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=594 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=594 {source="BIRNLEX:707"} +xref: http://linkedlifedata.com/resource/umls/id/C0152379 +xref: http://www.snomedbrowser.com/Codes/Details/369019006 +xref: MBA:841 +xref: Trapezoid:body +xref: UMLS:C0152379 {source="BIRNLEX:707"} +is_a: UBERON:0019293 ! white matter of pontine tegmentum + +[Term] +id: UBERON:0002933 +name: nucleus of anterior commissure +synonym: "anterior commissural nucleus" RELATED [BAMS:AC] +synonym: "anterior commissure nucleus" EXACT [FMA:61883] +synonym: "bed nucleus of anterior commissure" EXACT [FMA:61883] +synonym: "bed nucleus of the anterior commissure" RELATED [NeuroNames:266] +synonym: "nucleus commissurae anterior" RELATED LATIN [NeuroNames:266] +synonym: "nucleus commissurae anterioris" RELATED LATIN [NeuroNames:266] +synonym: "nucleus interstitialis commissurae anterior" RELATED LATIN [NeuroNames:266] +synonym: "nucleus of commissura anterior" EXACT [FMA:61883] +synonym: "nucleus of the anterior commissure" RELATED [NeuroNames:266] +xref: BAMS:AC +xref: BAMS:ACN +xref: BAMS:AGN +xref: BAMS:BAC +xref: BIRNLEX:712 +xref: BM:Tel-ACN +xref: DMBA:15794 +xref: FMA:61883 +xref: HBA:4312 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=266 {source="BIRNLEX:712"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=266 +xref: http://linkedlifedata.com/resource/umls/id/C0262292 +xref: MBA:287 +xref: UMLS:C0262292 {source="BIRNLEX:712"} +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0002663 ! septal nuclear complex + +[Term] +id: UBERON:0002934 +name: ventral oculomotor nucleus +synonym: "nucleus nervi oculomotorii ventrolateralis" RELATED LATIN [NeuroNames:496] +synonym: "nucleus nervi oculomotorii, pars ventralis" RELATED LATIN [NeuroNames:496] +synonym: "V3" BROAD ABBREVIATION [BIRNLEX:713, NIFSTD:NeuroNames_abbrevSource] +synonym: "ventral nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "ventral oculomotor cell column" EXACT [FMA:72422] +xref: BIRNLEX:713 +xref: DHBA:12205 +xref: FMA:72422 +xref: HBA:9038 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=496 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=496 {source="BIRNLEX:713"} +xref: http://linkedlifedata.com/resource/umls/id/C0175380 +xref: UMLS:C0175380 {source="BIRNLEX:713"} +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus +relationship: part_of UBERON:0001715 {source="NIFSTD"} ! oculomotor nuclear complex + +[Term] +id: UBERON:0002935 +name: magnocellular part of ventral anterior nucleus +synonym: "magnocellular division of ventral anterior nucleus of thalamus" EXACT [FMA:62192] +synonym: "magnocellular part of the ventral anterior nucleus" RELATED [NeuroNames:336] +synonym: "magnocellular ventral anterior nucleus" EXACT [BIRNLEX:716] +synonym: "nucleus lateropolaris (magnocellularis)" EXACT [BIRNLEX:716] +synonym: "nucleus lateropolaris magnocellularis (hassler)" EXACT [BIRNLEX:716] +synonym: "nucleus rostralis lateralis situs perifascicularis" EXACT [BIRNLEX:716] +synonym: "nucleus thalamicus ventral anterior, pars magnocellularis" EXACT [BIRNLEX:716] +synonym: "nucleus thalamicus ventralis anterior, pars magnocellularis" RELATED LATIN [NeuroNames:336] +synonym: "nucleus ventralis anterior, pars magnocellularis" EXACT [BIRNLEX:716] +synonym: "pars magnocellularis nuclei ventralis anterior thalami" EXACT LATIN [FMA:62192, FMA:TA] +synonym: "VAMC" BROAD ABBREVIATION [BIRNLEX:716, NIFSTD:NeuroNames_abbrevSource] +synonym: "ventral anterior nucleus, magnocellular part" EXACT [FMA:62192] +synonym: "ventral anterior nucleus, pars magnocellularis" EXACT [FMA:62192] +synonym: "ventral anterior thalamic nucleus, magnocellular part" EXACT [FMA:62192] +synonym: "ventroanterior thalamic nucleus, magnocellular part" EXACT [BIRNLEX:716] +xref: BAMS:VAMC +xref: BIRNLEX:716 +xref: BM:Die-Th-VA-VAmc +xref: DHBA:10419 +xref: FMA:62192 +xref: HBA:4420 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=336 {source="BIRNLEX:716"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=336 +xref: http://linkedlifedata.com/resource/umls/id/C0228335 +xref: UMLS:C0228335 {source="BIRNLEX:716"} +is_a: UBERON:0019269 ! gray matter of diencephalon +relationship: part_of UBERON:0002637 {source="FMA"} ! ventral anterior nucleus of thalamus + +[Term] +id: UBERON:0002936 +name: magnocellular part of red nucleus +def: "The magnocellular red nucleus (RNm) is located in the rostral midbrain and is involved in motor coordination. Together with the parvocellular red nucleus, it makes up the red nucleus." [http://en.wikipedia.org/wiki/Magnocellular_red_nucleus] +synonym: "magnocellular part of the red nucleus" RELATED [NeuroNames:507] +synonym: "nucleus ruber magnocellularis" RELATED LATIN [NeuroNames:507] +synonym: "nucleus ruber, pars magnocellularis" RELATED LATIN [NeuroNames:507] +synonym: "palaeorubrum" RELATED LATIN [NeuroNames:507] +synonym: "paleoruber" EXACT [FMA:72431] +synonym: "pars magnocellularis (ruber)" RELATED LATIN [NeuroNames:507] +synonym: "pars magnocellularis nuclei rubri" EXACT LATIN [FMA:72431, FMA:TA] +synonym: "red nucleus magnocellular part" RELATED [BAMS:RMC] +synonym: "red nucleus magnocellular part" RELATED [BAMS:RNmc] +synonym: "red nucleus, magnocellular part" EXACT [FMA:72431] +synonym: "RMC" BROAD ABBREVIATION [BIRNLEX:720, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:RMC +xref: BAMS:RNmc +xref: BIRNLEX:720 +xref: DHBA:12249 +xref: DMBA:16737 +xref: FMA:72431 +xref: HBA:9055 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=507 {source="BIRNLEX:720"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=507 +xref: http://en.wikipedia.org/wiki/Magnocellular_red_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0175402 +xref: UMLS:C0175402 {source="BIRNLEX:720"} +is_a: UBERON:0019267 ! gray matter of midbrain +relationship: part_of UBERON:0001947 ! red nucleus + +[Term] +id: UBERON:0002937 +name: parvicellular part of ventral anterior nucleus +synonym: "nucleus ventralis anterior (dewulf)" EXACT [BIRNLEX:722] +synonym: "nucleus ventralis anterior, pars parvicellularis" EXACT [BIRNLEX:722] +synonym: "nucleus ventralis anterior, pars parvocellularis" RELATED LATIN [NeuroNames:335] +synonym: "parvicellular part of the ventral anterior nucleus" RELATED [NeuroNames:335] +synonym: "VAPC" BROAD ABBREVIATION [BIRNLEX:722, NIFSTD:NeuroNames_abbrevSource] +synonym: "ventral anterior nucleus, pars parvicellularis" EXACT [FMA:62191] +synonym: "ventral anterior thalamic nucleus, parvicellular part" EXACT [FMA:62191] +synonym: "ventralis anterior (jones)" EXACT [] +xref: BAMS:VAPC +xref: BIRNLEX:722 +xref: FMA:62191 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=335 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=335 {source="BIRNLEX:722"} +xref: http://linkedlifedata.com/resource/umls/id/C0228334 +xref: UMLS:C0228334 {source="BIRNLEX:722"} +is_a: UBERON:0019269 ! gray matter of diencephalon +relationship: part_of UBERON:0002637 {source="FMA"} ! ventral anterior nucleus of thalamus + +[Term] +id: UBERON:0002938 +name: parvocellular part of red nucleus +def: "The parvocellular red nucleus (RNp) is located in the rostral midbrain and is involved in motor coordination. Together with the magnocellular red nucleus, it makes up the red nucleus." [http://en.wikipedia.org/wiki/Parvocellular_red_nucleus] +synonym: "neoruber" EXACT [FMA:72430] +synonym: "neorubrum" RELATED LATIN [NeuroNames:506] +synonym: "nucleus ruber parvocellularis" RELATED LATIN [NeuroNames:506] +synonym: "nucleus ruber, pars parvocellularis" RELATED LATIN [NeuroNames:506] +synonym: "pars parvocellularis (ruber)" RELATED LATIN [NeuroNames:506] +synonym: "pars parvocellularis nuclei rubri" EXACT LATIN [FMA:72430, FMA:TA] +synonym: "parvocellular part of the red nucleus" RELATED [NeuroNames:506] +synonym: "red nucleus parvicellular part" RELATED [BAMS:RNpc] +synonym: "red nucleus, parvicellular part" RELATED [NeuroNames:506] +synonym: "red nucleus, parvocellular part" EXACT [FMA:72430] +synonym: "RPC" BROAD ABBREVIATION [BIRNLEX:725, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:RNpc +xref: BAMS:RPC +xref: BIRNLEX:725 +xref: DHBA:12250 +xref: DMBA:16633 +xref: FMA:72430 +xref: HBA:9056 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=506 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=506 {source="BIRNLEX:725"} +xref: http://en.wikipedia.org/wiki/Parvocellular_red_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0175401 +xref: UMLS:C0175401 {source="BIRNLEX:725"} +is_a: UBERON:0019267 ! gray matter of midbrain +relationship: part_of UBERON:0001947 ! red nucleus + +[Term] +id: UBERON:0002939 +name: ventral posteroinferior nucleus +synonym: "nuclei ventrales posteriores thalami" RELATED [BTO:0002464] +synonym: "nuclei ventrobasales thalami" RELATED [BTO:0002464] +synonym: "nucleus ventralis posterior inferior thalami" EXACT LATIN [FMA:62199, FMA:TA] +synonym: "ventral posterior" RELATED [BAMS:VP] +synonym: "ventral posterior complex of the thalamus" RELATED [BAMS:VP] +synonym: "ventral posterior inferior nucleus" EXACT [FMA:62199] +synonym: "ventral posterior inferior nucleus of dorsal thalamus" RELATED [BAMS:VPI] +synonym: "ventral posterior inferior nucleus of thalamus" EXACT [FMA:62199] +synonym: "ventral posterior inferior thalamic nucleus" EXACT [FMA:62199] +synonym: "ventral posterior nuclei of thalamus" RELATED [BTO:0002464] +synonym: "ventral posterior nucleus of thalamus" RELATED [BTO:0002464] +synonym: "ventral posterolateral thalamic nucleus, inferior part" RELATED [BAMS:VPI] +synonym: "ventroposterior inferior nucleus" RELATED [BTO:0004374] +synonym: "ventroposterior inferior thalamic" RELATED [BAMS:VPI] +synonym: "ventroposterior nucleus" RELATED [BTO:0004373] +synonym: "ventroposterior nucleus of thalamus" RELATED [BAMS:VP] +synonym: "VPN" RELATED ABBREVIATION [BTO:0004373] +xref: BAMS:VP +xref: BAMS:VPI +xref: BIRNLEX:728 +xref: BM:Die-Th-VPI +xref: BTO:0002464 +xref: BTO:0004373 +xref: BTO:0004374 +xref: DHBA:10426 +xref: EMAPA:35912 +xref: EV:0100209 +xref: FMA:62199 +xref: HBA:4426 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=350 +xref: http://www.snomedbrowser.com/Codes/Details/369173003 +xref: MA:0000867 +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0002596 {source="FMA"} ! ventral posterior nucleus of thalamus + +[Term] +id: UBERON:0002940 +name: anterior column of fornix +synonym: "anterior crus of fornix" EXACT [FMA:61966] +synonym: "anterior pillar of fornix" EXACT [FMA:61966] +synonym: "columna fornicis anterior" EXACT LATIN [FMA:61966, FMA:TA] +synonym: "fornix, crus anterius" EXACT LATIN [FMA:61966, FMA:TA] +xref: BAMS:afx +xref: BIRNLEX:731 +xref: FMA:61966 +xref: HBA:9251 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=269 +xref: http://linkedlifedata.com/resource/umls/id/C0175236 +xref: UMLS:C0175236 {source="BIRNLEX:731"} +is_a: UBERON:0002437 ! cerebral hemisphere white matter +disjoint_from: UBERON:0006115 {source="lexical"} ! posterior column of fornix +disjoint_from: UBERON:0014539 {source="NIFSTD"} ! precommissural fornix of forebrain +relationship: part_of UBERON:0000052 {source="NIFSTD"} ! fornix of brain + +[Term] +id: UBERON:0002941 +name: capsule of red nucleus +synonym: "capsula nuclei rubris tegmenti" RELATED LATIN [NeuroNames:508] +synonym: "capsule of the red nucleus" RELATED [NeuroNames:508] +synonym: "CR" BROAD ABBREVIATION [BIRNLEX:732, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus ruber, capsula" RELATED LATIN [NeuroNames:508] +synonym: "red nuclear capsule" EXACT [FMA:72450] +xref: BAMS:cr +xref: BIRNLEX:732 +xref: FMA:72450 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=508 {source="BIRNLEX:732"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=508 +xref: http://linkedlifedata.com/resource/umls/id/C0152369 +xref: http://www.snomedbrowser.com/Codes/Details/369245007 +xref: UMLS:C0152369 {source="BIRNLEX:732"} +is_a: UBERON:0014891 ! brainstem white matter +is_a: UBERON:0016554 ! white matter of midbrain +relationship: part_of UBERON:0001947 ! red nucleus + +[Term] +id: UBERON:0002942 +name: ventral posterolateral nucleus +def: "The ventral posterolateral nucleus (VPL) is a nucleus of the thalamus. Together with the ventral posteromedial nucleus (VPM) it constitutes the ventral posterior nucleus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Ventral_posterolateral_nucleus] +subset: uberon_slim +synonym: "nucleus ventralis posterior lateralis thalami" EXACT [BIRNLEX:737] +synonym: "nucleus ventralis posterolateralis" EXACT [BIRNLEX:737] +synonym: "nucleus ventralis posterolateralis thalami" EXACT [BIRNLEX:737] +synonym: "nucleus ventralis posterolateralis thalami" RELATED LATIN [http://en.wikipedia.org/wiki/Ventral_posterolateral_nucleus] +synonym: "nucleus ventralis thalami posterior lateralis" EXACT [BIRNLEX:737] +synonym: "posterolateral ventral nucleus of thalamus" EXACT [FMA:62200] +synonym: "posterolateral ventral nucleus of the thalamus" EXACT [BIRNLEX:737] +synonym: "ventral posterior lateral nucleus" RELATED [NeuroNames:344] +synonym: "ventral posterior lateral nucleus of dorsal thalamus" RELATED [BAMS:VPL] +synonym: "ventral posterolateral nucleus of thalamus" EXACT [FMA:62200] +synonym: "ventral posterolateral nucleus of the thalamus" EXACT [BIRNLEX:737] +synonym: "ventral posterolateral nucleus of the thalamus principal part" RELATED [BAMS:VPL] +synonym: "ventral posterolateral nucleus of the thalamus, general" RELATED [NeuroNames:344] +synonym: "ventral posterolateral nucleus of the thalamus, principal part" RELATED [BAMS:VPL] +synonym: "ventral posterolateral thalamic nucleus" EXACT [FMA:62200] +synonym: "ventroposterior lateral thalamic nucleus" RELATED [BAMS:VPL] +synonym: "ventroposterolateral nucleus of the thalamus" RELATED [NeuroNames:344] +synonym: "VPL" BROAD ABBREVIATION [BIRNLEX:737, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:VPL +xref: BIRNLEX:737 +xref: DHBA:10424 +xref: DMBA:16430 +xref: EMAPA:35910 +xref: FMA:62200 +xref: HBA:4425 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=344 {source="BIRNLEX:737"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=344 +xref: http://en.wikipedia.org/wiki/Ventral_posterolateral_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0228337 +xref: http://www.snomedbrowser.com/Codes/Details/369171001 +xref: MA:0002894 +xref: MBA:718 +xref: NCIT:C33863 +xref: UMLS:C0228337 {source="BIRNLEX:737"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0002596 {source="FMA", source="NIF"} ! ventral posterior nucleus of thalamus + +[Term] +id: UBERON:0002943 +name: lingual gyrus +def: "Component of the occipital lobe. The rostral boundary of the lingual gyrus was the posterior extent of the parahippocampal gyrus whereas the caudal boundary was the most posterior coronal slice where the gyrus could be visualized. The medial and lateral boundaries were the medial portion of the temporal and occipital cortices and the medial bank of the collateral sulcus respectively (Christine Fennema-Notestine)." [BIRNLEX:740] +subset: uberon_slim +synonym: "gyrus lingualis" RELATED LATIN [http://en.wikipedia.org/wiki/Lingual_gyrus] +synonym: "gyrus occipitotemporalis medialis" EXACT LATIN [FMA:61904, FMA:TA] +synonym: "lingula of cerebral hemisphere" EXACT [FMA:61904] +synonym: "medial occipito-temporal gyrus" RELATED [BAMS:MOTG] +synonym: "medial occipitotemporal gyrus" EXACT [FMA:61904] +synonym: "medial occipitotemporal gyrus-2" EXACT [FMA:61904] +xref: BAMS:LgG +xref: BAMS:LiG +xref: BAMS:MOTG +xref: BIRNLEX:740 +xref: DHBA:12151 +xref: FMA:61904 +xref: HBA:4191 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=158 {source="BIRNLEX:740"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=158 +xref: http://linkedlifedata.com/resource/umls/id/C0152308 +xref: http://www.snomedbrowser.com/Codes/Details/279203007 +xref: Lingual:gyrus +xref: UMLS:C0152308 {source="BIRNLEX:740"} +is_a: UBERON:0014640 ! occipital gyrus + +[Term] +id: UBERON:0002944 +name: spinothalamic tract of medulla +def: "Part of spinothalamic tract that is in the medulla" [BIRNLEX:741] +subset: uberon_slim +synonym: "spinothalamic tract" BROAD [BIRNLEX:741, FMA:72644] +synonym: "spinothalamic tract of the medulla" RELATED [NeuroNames:810] +synonym: "tractus spinothalamicus (myelencephali)" RELATED LATIN [NeuroNames:810] +xref: BAMS:stm +xref: BIRNLEX:741 +xref: FMA:72644 +xref: GAID:703 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=810 {source="BIRNLEX:741"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=810 +xref: http://linkedlifedata.com/resource/umls/id/C0037953 +xref: http://www.snomedbrowser.com/Codes/Details/360570003 +xref: MESH:D013133 +xref: UMLS:C0037953 {source="BIRNLEX:741"} +is_a: UBERON:0007702 {source="FMA"} ! tract of brain +relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata +relationship: part_of UBERON:0007703 ! spinothalamic tract + +[Term] +id: UBERON:0002945 +name: ventral posteromedial nucleus of thalamus +def: "The ventral posteromedial nucleus is a nucleus of the thalamus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Ventral_posteromedial_nucleus] +subset: uberon_slim +synonym: "arcuate nucleus of thalamus" EXACT [FMA:62202] +synonym: "arcuate nucleus of the thalamus" EXACT [BIRNLEX:743] +synonym: "arcuate nucleus-3" EXACT [FMA:62202] +synonym: "nucleus arcuatus thalami" EXACT [BIRNLEX:743] +synonym: "nucleus semilunaris thalami" EXACT [BIRNLEX:743] +synonym: "nucleus ventralis posterior medialis thalami" EXACT [BIRNLEX:743] +synonym: "nucleus ventralis posteromedialis" EXACT [BIRNLEX:743] +synonym: "nucleus ventralis posteromedialis thalami" EXACT [BIRNLEX:743] +synonym: "nucleus ventralis posteromedialis thalami" RELATED LATIN [http://en.wikipedia.org/wiki/Ventral_posteromedial_nucleus] +synonym: "nucleus ventrocaudalis anterior internus (hassler)" EXACT [BIRNLEX:743] +synonym: "posteromedial ventral nucleus" EXACT [FMA:62202] +synonym: "posteromedial ventral nucleus of thalamus" EXACT [FMA:62202] +synonym: "posteromedial ventral nucleus of the thalamus" EXACT [BIRNLEX:743] +synonym: "semilunar nucleus" EXACT [FMA:62202] +synonym: "thalamic gustatory nucleus" EXACT [FMA:62202] +synonym: "ventral posterior medial nucleus" EXACT [FMA:62202] +synonym: "ventral posterior medial nucleus of dorsal thalamus" RELATED [BAMS:VPM] +synonym: "ventral posterior medial nucleus of thalamus" EXACT [BIRNLEX:743] +synonym: "ventral posteromedial nucleus of thalamus" EXACT [FMA:62202] +synonym: "ventral posteromedial nucleus of the thalamus" EXACT [BIRNLEX:743] +synonym: "ventral posteromedial nucleus of the thalamus principal part" RELATED [BAMS:VPM] +synonym: "ventral posteromedial nucleus of the thalamus, general" RELATED [NeuroNames:347] +synonym: "ventral posteromedial nucleus of the thalamus, principal part" RELATED [BAMS:VPM] +synonym: "ventral posteromedial thalamic nucleus" EXACT [BIRNLEX:743] +synonym: "ventroposterior medial thalamic nucleus" RELATED [BAMS:VPM] +synonym: "ventroposteromedial nucleus of the thalamus" EXACT [BIRNLEX:743] +synonym: "VPM" BROAD ABBREVIATION [BIRNLEX:743, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:Gus +xref: BAMS:SL +xref: BAMS:VPM +xref: BIRNLEX:743 +xref: BM:Die-Th-VPM +xref: DHBA:10425 +xref: DMBA:16429 +xref: EMAPA:35911 +xref: FMA:62202 +xref: HBA:4424 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=347 {source="BIRNLEX:743"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=347 +xref: http://en.wikipedia.org/wiki/Ventral_posteromedial_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0752056 +xref: http://www.snomedbrowser.com/Codes/Details/369172008 +xref: MBA:733 +xref: NCIT:C33864 +xref: UMLS:C0752056 {source="BIRNLEX:743"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0002596 {source="FMA"} ! ventral posterior nucleus of thalamus + +[Term] +id: UBERON:0002946 +name: obsolete regional part of cerebellum +synonym: "segment of cerebellum" EXACT [BIRNLEX:748] +synonym: "subdivision of cerebellum" RELATED [FMA:256150] +is_obsolete: true +replaced_by: UBERON:0002037 +consider: BIRNLEX:748 +consider: FMA:256150 +consider: SCTID:119242005 + +[Term] +id: UBERON:0002947 +name: frontal operculum +def: "Portion of frontal lobe that overlaps the insular cortex (adapted from Wikipedia)" [BIRNLEX:751] +synonym: "nucleus ventralis oralis, pars medialis (Dewulf)" RELATED LATIN [NeuroNames:2205] +synonym: "operculum frontale" RELATED LATIN [http://en.wikipedia.org/wiki/Operculum_(brain)] +xref: BAMS:FOp +xref: BAMS:fro +xref: BIRNLEX:751 +xref: DHBA:12127 +xref: FMA:74886 +xref: HBA:4078 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2205 {source="BIRNLEX:751"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2205 +xref: http://linkedlifedata.com/resource/umls/id/C0149547 +xref: http://www.snomedbrowser.com/Codes/Details/362352005 +xref: UMLS:C0149547 {source="BIRNLEX:751"} +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0010262 ! operculum of brain + +[Term] +id: UBERON:0002948 +name: superior occipital gyrus +synonym: "gyrus occipitalis primus" EXACT [FMA:61901] +synonym: "gyrus occipitalis superior" RELATED LATIN [NeuroNames:154] +xref: BAMS:O1 +xref: BAMS:SOG +xref: BIRNLEX:758 +xref: DHBA:12154 +xref: FMA:61901 +xref: HBA:4212 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=154 {source="BIRNLEX:758"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=154 +xref: http://linkedlifedata.com/resource/umls/id/C0228230 +xref: http://www.snomedbrowser.com/Codes/Details/279182006 +xref: UMLS:C0228230 {source="BIRNLEX:758"} +is_a: UBERON:0014640 ! occipital gyrus + +[Term] +id: UBERON:0002949 +name: tectospinal tract +def: "A long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the superior colliculus of the midbrain towards target cells in the ventral spinal cord[GO]." [http://en.wikipedia.org/wiki/Tectospinal_tract] +subset: uberon_slim +synonym: "Held's bundle" EXACT [FMA:72620] +synonym: "tectospinal pathway" EXACT [FMA:72620] +synonym: "tectospinal pathway" RELATED [NeuroNames:2769] +synonym: "tectospinal tract" RELATED [NeuroNames:2769] +synonym: "tectospinal tract of the medulla" RELATED [NeuroNames:786] +synonym: "tractus tectospinalis" RELATED LATIN [NeuroNames:2769] +synonym: "tractus tectospinalis" RELATED LATIN [http://en.wikipedia.org/wiki/Tectospinal_tract] +synonym: "tratto tettospinale@it" RELATED [NeuroNames:2769] +xref: BAMS:ts +xref: BAMS:tsp +xref: BIRNLEX:759 +xref: BM:TSp +xref: DHBA:12794 +xref: DMBA:17802 +xref: FMA:72620 +xref: HBA:265505662 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=786 {source="BIRNLEX:759"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=786 +xref: http://linkedlifedata.com/resource/umls/id/C0228553 +xref: MBA:877 +xref: Tectospinal:tract +xref: UMLS:C0228553 {source="BIRNLEX:759"} +is_a: UBERON:0007702 {source="FMA"} ! tract of brain + +[Term] +id: UBERON:0002950 +name: obsolete regional part of midbrain +def: "A regional part of brain that is part of a midbrain [Automatically generated definition]." [OBOL:automatic] +subset: non_informative +synonym: "midbrain segment" EXACT [FMA:61997] +synonym: "segment of midbrain" EXACT [BIRNLEX:763] +is_obsolete: true +consider: BIRNLEX:763 +consider: FMA:61997 +consider: SCTID:119239004 + +[Term] +id: UBERON:0002951 +name: obsolete regional part of intermediate hypothalamic region +def: "A regional part of brain that is part of a intermediate hypothalamic region [Automatically generated definition]." [OBOL:automatic] +subset: non_informative +synonym: "intermediate hypothalamic region segment" EXACT [FMA:62310] +synonym: "segment of intermediate hypothalamic region" EXACT [BIRNLEX:767] +is_obsolete: true +consider: BIRNLEX:767 +consider: FMA:62310 + +[Term] +id: UBERON:0002952 +name: intermediate acoustic stria +def: "White matter structure containing axons arising from cochlear nuclear complex (Brodal, Neurological Anatomy, 3rd ed, 1985, pg 609)" [BIRNLEX:768] +synonym: "commissure of held" EXACT [] +synonym: "intermediate acoustic stria (held)" EXACT [BIRNLEX:768] +synonym: "intermediate acoustic stria of held" EXACT [] +synonym: "striae acusticae intermedius" RELATED LATIN [NeuroNames:603] +xref: BAMS:ias +xref: BIRNLEX:768 +xref: DHBA:12755 +xref: FMA:72497 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=603 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=603 {source="BIRNLEX:768"} +xref: http://linkedlifedata.com/resource/umls/id/C0175455 +xref: MBA:641 +xref: UMLS:C0175455 {source="BIRNLEX:768"} +is_a: UBERON:0013199 {source="FMA"} ! stria of neuraxis +is_a: UBERON:0019293 ! white matter of pontine tegmentum + +[Term] +id: UBERON:0002953 +name: lateral lemniscus +alt_id: UBERON:0003042 +def: "A fiber bundle that runs through the medulla, pons and midbrain that arises in the cochlear nucleus and projects to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. The brainstem nuclei include the superior olive, the medial nucleus of the trapezoid body, and the dorsal nucleus of the lateral lemniscus. Fibers leaving these brainstem nuclei ascending to the inferior colliculus rejoin the lateral lemniscus. In that sense, this is not a 'lemniscus' in the true sense of the word (second order, decussated sensory axons), as there is third (and out of the lateral superior olive, fourth) order information coming out of some of these brainstem nuclei. Adapted from Wikipedia.org (MM)." [BIRNLEX:976, http://en.wikipedia.org/wiki/Lateral_lemniscus] +subset: uberon_slim +synonym: "central acoustic tract" RELATED [NeuroNames:609] +synonym: "lateral fillet" EXACT [FMA:72502] +synonym: "lateral lemniscus (Reil)" RELATED [NeuroNames:609] +synonym: "lemniscus acusticus" RELATED LATIN [NeuroNames:609] +synonym: "lemniscus lateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_lemniscus] +xref: BAMS:II +xref: BAMS:ll +xref: BIRNLEX:976 +xref: BM:Pons-LL +xref: DHBA:12760 +xref: DMBA:17774 +xref: FMA:72502 +xref: HBA:12958 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=609 {source="BIRNLEX:976"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=609 +xref: http://linkedlifedata.com/resource/umls/id/C0152375 +xref: http://www.snomedbrowser.com/Codes/Details/362399003 +xref: Lateral:lemniscus +xref: MBA:658 +xref: UMLS:C0152375 {source="BIRNLEX:976"} +is_a: UBERON:0003001 {source="NIFSTD"} ! nervous system lemniscus +disjoint_from: UBERON:0003002 {source="lexical"} ! medial lemniscus + +[Term] +id: UBERON:0002954 +name: dorsal hypothalamic area +def: "A relatively small region of the hypothalamus located inferior to the hypothalamic sulcus." [http://medical-dictionary.thefreedictionary.com/dorsal+hypothalamic+area] +comment: ). +synonym: "area dorsalis hypothalami" RELATED LATIN [NeuroNames:430] +synonym: "area hypothalamica dorsalis" RELATED LATIN [NeuroNames:430] +synonym: "DH" BROAD ABBREVIATION [BIRNLEX:777, NIFSTD:NeuroNames_abbrevSource] +synonym: "dorsal hypothalamic zone" EXACT [ZFA:0000347] +synonym: "nucleus hypothalamicus dorsalis" RELATED LATIN [NeuroNames:430] +xref: BAMS:DA +xref: BAMS:DHA +xref: BAMS:HDA +xref: BIRNLEX:777 +xref: BM:Die-Hy-HDA +xref: DHBA:13335 +xref: FMA:62339 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=430 {source="BIRNLEX:777"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=430 +xref: http://linkedlifedata.com/resource/umls/id/C0175318 +xref: UMLS:C0175318 {source="BIRNLEX:777"} +xref: ZFA:0000347 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0001898 {source="NIFSTD"} ! hypothalamus + +[Term] +id: UBERON:0002955 +name: rhomboidal nucleus +synonym: "nucleus commissuralis rhomboidalis" RELATED [BTO:0002458] +synonym: "nucleus rhomboidalis" RELATED [BTO:0002458] +synonym: "nucleus rhomboidalis thalami" RELATED LATIN [NeuroNames:310] +synonym: "Rh" BROAD ABBREVIATION [BIRNLEX:778, NIFSTD:NeuroNames_abbrevSource] +synonym: "rhomboid nucleus" EXACT [FMA:62154] +synonym: "rhomboid nucleus (Cajal 1904)" RELATED [NeuroNames:310] +synonym: "rhomboid nucleus of the thalamus" RELATED [NeuroNames:310] +synonym: "rhomboid thalamic nucleus" EXACT [FMA:62154] +xref: BAMS:RH +xref: BAMS:Rh +xref: BIRNLEX:778 +xref: BTO:0002458 +xref: DHBA:10447 +xref: DMBA:16405 +xref: FMA:62154 +xref: HBA:4433 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=310 {source="BIRNLEX:778"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=310 +xref: http://linkedlifedata.com/resource/umls/id/C0228326 +xref: MBA:189 +xref: UMLS:C0228326 {source="BIRNLEX:778"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0002705 {source="NIFSTD"} ! midline nuclear group + +[Term] +id: UBERON:0002956 +name: granular layer of cerebellar cortex +def: "The granular layer is the innermost layer of the cerebellar cortex. This layer contains densely packed small neurons, mostly granule cells. Some Golgi cells are found at the outer border. Granule neurons send parallel fibers to the upper molecular layer, where they synapse with Purkinje cell dendrites. Mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons at cerebellar glomeruli in the granule cell layer." [GO:0021681] +subset: pheno_slim +synonym: "cerebellar granular layer" EXACT [GO:0021681] +synonym: "cerebellar granule cell layer" EXACT [] +synonym: "cerebellar granule layer" EXACT [] +synonym: "cerebellum granule cell layer" EXACT [MA:0000993] +synonym: "cerebellum granule layer" EXACT [] +synonym: "granular layer of cerebellum" RELATED [BTO:0004425] +synonym: "granule cell layer of cerebellar cortex" EXACT [BIRNLEX:779] +synonym: "stratum granulosum cerebelli" EXACT [BTO:0004425] +synonym: "stratum granulosum corticis cerebelli" EXACT LATIN [FMA:83140, FMA:TA] +xref: BIRNLEX:779 +xref: BTO:0004425 +xref: CALOHA:TS-1247 +xref: EMAPA:35217 +xref: FMA:83140 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=363 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=363 {source="BIRNLEX:779"} +xref: http://linkedlifedata.com/resource/umls/id/C1708253 +xref: MA:0000993 +xref: MBA:1143 +xref: NCIT:C49138 +xref: UMLS:C1708253 {source="ncithesaurus:Granular_Layer_of_the_Cerebellum"} +is_a: UBERON:0004130 ! cerebellar layer +intersection_of: UBERON:0004130 ! cerebellar layer +intersection_of: in_deep_part_of UBERON:0002129 ! cerebellar cortex +relationship: in_deep_part_of UBERON:0002129 ! cerebellar cortex + +[Term] +id: UBERON:0002957 +name: caudal central oculomotor nucleus +synonym: "caudal central nucleus" EXACT [FMA:72426] +synonym: "caudal central nucleus of oculomotor nerve" EXACT [FMA:72426] +synonym: "CC3" BROAD ABBREVIATION [BIRNLEX:780, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus caudalis centralis oculomotorii" RELATED LATIN [NeuroNames:500] +synonym: "nucleus centralis nervi oculomotorii" RELATED LATIN [NeuroNames:500] +synonym: "oculomotor nerve central caudal nucleus" EXACT [] +xref: BAMS:CC3 +xref: BIRNLEX:780 +xref: DHBA:12200 +xref: FMA:72426 +xref: HBA:9033 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=500 {source="BIRNLEX:780"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=500 +xref: http://www.snomedbrowser.com/Codes/Details/369239004 +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus +relationship: part_of UBERON:0001715 {source="NIFSTD"} ! oculomotor nuclear complex + +[Term] +id: UBERON:0002958 +name: medial lemniscus of pons +def: "Part of medial lemniscus located within the pons" [BIRNLEX:781] +synonym: "lemniscus medial" RELATED [BIRNLEX:887] +synonym: "lemniscus medialis (pontis)" RELATED LATIN [NeuroNames:610] +synonym: "medial lemniscus of pons of varolius" EXACT [OBOL:automatic] +synonym: "medial lemniscus of the pons" RELATED [NeuroNames:610] +synonym: "pons medial lemniscus" EXACT [OBOL:automatic] +synonym: "pons of varolius medial lemniscus" EXACT [OBOL:automatic] +xref: BAMS:mlp +xref: BIRNLEX:781 +xref: FMA:72503 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=610 {source="BIRNLEX:781"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=610 +xref: http://linkedlifedata.com/resource/umls/id/C0228439 +xref: http://www.snomedbrowser.com/Codes/Details/361572002 +xref: UMLS:C0228439 {source="BIRNLEX:781"} +is_a: UBERON:0003001 {source="FMA"} ! nervous system lemniscus +relationship: part_of UBERON:0003002 {source="FMA", source="NIFSTD"} ! medial lemniscus +relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum + +[Term] +id: UBERON:0002959 +name: subfascicular nucleus +synonym: "nucleus subfascicularis" RELATED LATIN [NeuroNames:311] +synonym: "SF" BROAD ABBREVIATION [BIRNLEX:783, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:SF +xref: BIRNLEX:783 +xref: FMA:62155 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=311 {source="BIRNLEX:783"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=311 +xref: http://linkedlifedata.com/resource/umls/id/C0175256 +xref: UMLS:C0175256 {source="BIRNLEX:783"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0002705 {source="NIFSTD"} ! midline nuclear group + +[Term] +id: UBERON:0002960 +name: central oculomotor nucleus +synonym: "C3" BROAD ABBREVIATION [BIRNLEX:786, NIFSTD:NeuroNames_abbrevSource] +synonym: "central nucleus of perlia" EXACT [] +synonym: "nucleus nervi oculomotorii centralis" RELATED LATIN [NeuroNames:499] +synonym: "nucleus of perlia" EXACT [] +synonym: "perlia nucleus of oculomotor nerve" RELATED [NeuroNames:499] +synonym: "spitzka's nucleus" EXACT [FMA:72425] +xref: BIRNLEX:786 +xref: DHBA:12201 +xref: FMA:72425 +xref: HBA:9034 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=499 {source="BIRNLEX:786"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=499 +xref: http://linkedlifedata.com/resource/umls/id/C0175384 +xref: UMLS:C0175384 {source="BIRNLEX:786"} +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus +relationship: part_of UBERON:0001715 {source="NIFSTD"} ! oculomotor nuclear complex + +[Term] +id: UBERON:0002961 +name: archicortex +def: "A portion of the cerebral cortex that, with the paleocortex, develops in association with the olfactory system, and which is phylogenetically older than the neocortex and lacks its layered structure. The embryonic archicortex corresponds to the cortex of the dentate gyrus and hippocampus in mature mammals. Being part of the limbic system, it has functions related to emotions and formation of memory. Signals being sent from the limbic lobe to the hippocampal formations can go via the archicortex as an intermediate." [http://en.wikipedia.org/wiki/Archicortex] +subset: uberon_slim +synonym: "archipallium" EXACT [FMA:62424] +synonym: "hippocampal pallium" RELATED [] +synonym: "hippocampus" RELATED [NeuroNames:170] +synonym: "intralimbic gyrus" RELATED [NeuroNames:170] +xref: BAMS:ACx +xref: BIRNLEX:787 +xref: DHBA:10293 +xref: EHDAA2:0004496 +xref: FMA:62424 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=170 +xref: http://en.wikipedia.org/wiki/Archicortex +xref: http://www.snomedbrowser.com/Codes/Details/423918008 +is_a: UBERON:0014734 {source="FMA"} ! allocortex +relationship: part_of UBERON:0002600 {source="FMA"} ! limbic lobe + +[Term] +id: UBERON:0002962 +name: adductor pollicis muscle +def: "A muscle in the manus that functions to adduct the thumb. It has two heads: transverse and oblique. It is a fleshy, flat, triangular, and fan-shaped muscle deep in the thenar compartment beneath the long flexor tendons and the lumbrical muscles at the center of the palm. It overlies the metacarpal bones and the interosseous muscles[WP]." [http://en.wikipedia.org/wiki/Adductor_pollicis_muscle] +synonym: "adductor digiti primi" RELATED [EMAPA:36213] +synonym: "adductor pollicis" EXACT [http://en.wikipedia.org/wiki/Adductor_pollicis_muscle] +synonym: "musculus adductor pollicis" RELATED LATIN [http://en.wikipedia.org/wiki/Adductor_pollicis_muscle] +xref: EMAPA:36213 +xref: FMA:37380 +xref: http://en.wikipedia.org/wiki/Adductor_pollicis_muscle +xref: http://www.snomedbrowser.com/Codes/Details/181649004 +is_a: UBERON:0001500 ! muscle of manus +is_a: UBERON:0011145 ! adductor muscle +relationship: has_muscle_antagonist UBERON:0001527 {source="dbpedia"} ! abductor pollicis longus +relationship: has_muscle_antagonist UBERON:0008465 {source="dbpedia"} ! abductor pollicis brevis muscle +relationship: has_muscle_insertion UBERON:0004445 {notes="medial side of the base of the proximal phalanx of the thumb and the ulnar sesamoid", source="dbpedia"} ! proximal epiphysis of proximal phalanx of manual digit 1 +relationship: has_muscle_insertion UBERON:0007993 {notes="medial side of the base of the proximal phalanx of the thumb and the ulnar sesamoid", source="dbpedia"} ! ulnar sesamoid bone + +[Term] +id: UBERON:0002963 +name: caudal pontine reticular nucleus +def: "The caudal pontine reticular nucleus is composed of gigantocellular neurons. In rabbits and cats it is exclusively giant cells, however in humans there are normally sized cells as well. The pontis caudalis is rostral to the gigantocellular nucleus and is located in the caudal pons, as the name would indicate. The pontis caudalis has been known to mediate head movement, in concert with the nucleus gigantocellularis and the superior colliculus. The neurons in the dorsal half of this nuclei fire rhythmically during mastication, and in an anesthetized animal it is possible to induce mastication via electrical stimulation of the PC or adjacent areas of the gigantocellular nucleus. The pontis caudalis is also thought to play a role in the grinding of teeth during sleep." [http://en.wikipedia.org/wiki/Caudal_pontine_reticular_nucleus] +subset: uberon_slim +synonym: "nucleus reticularis pontis caudalis" RELATED LATIN [http://en.wikipedia.org/wiki/Caudal_pontine_reticular_nucleus] +synonym: "pontine reticular nucleus caudal part" RELATED [BAMS:PRNc] +synonym: "pontine reticular nucleus caudal part" RELATED [BAMS:PnC] +synonym: "pontine reticular nucleus, caudal part" EXACT [FMA:72469] +xref: BAMS:PnC +xref: BAMS:PRNc +xref: BIRNLEX:792 +xref: DHBA:12493 +xref: FMA:72469 +xref: HBA:9162 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=566 +xref: http://en.wikipedia.org/wiki/Caudal_pontine_reticular_nucleus +xref: MBA:1093 +is_a: UBERON:0007413 ! nucleus of pontine reticular formation + +[Term] +id: UBERON:0002964 +name: dorsal oculomotor nucleus +synonym: "D3" BROAD ABBREVIATION [BIRNLEX:793, NIFSTD:NeuroNames_abbrevSource] +synonym: "dorsal nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "dorsal oculomotor cell column" EXACT [FMA:62442] +synonym: "nucleus nervi oculomotorii, pars dorsalis" RELATED LATIN [NeuroNames:493] +xref: BAMS:D3 +xref: BIRNLEX:793 +xref: DHBA:12202 +xref: FMA:62442 +xref: HBA:9035 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=493 {source="BIRNLEX:793"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=493 +xref: http://linkedlifedata.com/resource/umls/id/C0175377 +xref: UMLS:C0175377 {source="BIRNLEX:793"} +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus +relationship: part_of UBERON:0001715 {source="NIFSTD"} ! oculomotor nuclear complex + +[Term] +id: UBERON:0002965 +name: rostral intralaminar nuclear group +synonym: "anterior group of intralaminar nuclei" EXACT [DHBA:AILN] +synonym: "nuclei intralaminares rostrales" EXACT [BIRNLEX:794] +synonym: "RIL" BROAD ABBREVIATION [BIRNLEX:794, NIFSTD:NeuroNames_abbrevSource] +synonym: "rostral group of intralaminar nuclei" EXACT [HBA:ILr] +synonym: "rostral intralaminar nuclear group" EXACT [FMA:62164] +synonym: "rostral intralaminar nuclei" EXACT [FMA:62164] +xref: BAMS:RIL +xref: BIRNLEX:794 +xref: DHBA:10443 +xref: FMA:62164 +xref: HBA:12929 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=318 {source="BIRNLEX:794"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=318 +xref: http://linkedlifedata.com/resource/umls/id/C0175263 +xref: UMLS:C0175263 {source="BIRNLEX:794"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +disjoint_from: UBERON:0019295 {source="lexical"} ! caudal intralaminar nuclear group +relationship: part_of UBERON:0002733 {source="FMA"} ! intralaminar nuclear group + +[Term] +id: UBERON:0002966 +name: obsolete regional part of midbrain tectum +def: "A regional part of brain that is part of a midbrain tectum [Automatically generated definition]." [OBOL:automatic] +subset: non_informative +synonym: "midbrain tectum segment" EXACT [FMA:62398] +synonym: "segment of midbrain tectum" EXACT [BIRNLEX:795] +is_obsolete: true +consider: BIRNLEX:795 +consider: FMA:62398 + +[Term] +id: UBERON:0002967 +name: cingulate gyrus +def: "One of the convolutions on the medial surface of the cerebral hemisphere. It surrounds the rostral part of the brain and interhemispheric commissure and forms part of the limbic system. (MSH) One of three essential structures comprising the limbic lobe, the other two being the hippocampus and parahippocampal gyrus. (CSP)" [BIRNLEX:798] +subset: pheno_slim +subset: uberon_slim +synonym: "cingular gyrus" RELATED [NeuroNames:159] +synonym: "cingulate area" EXACT [FMA:62434] +synonym: "cingulate region" EXACT [FMA:62434] +synonym: "falciform lobe" EXACT [FMA:62434] +synonym: "gyri cinguli" RELATED LATIN [NeuroNames:159] +synonym: "upper limbic gyrus" EXACT [FMA:62434] +xref: BAMS:CG +xref: BAMS:CgG +xref: BIRNLEX:798 +xref: BM:Tel-CG +xref: BTO:0003976 +xref: Cingulate:gyrus +xref: DHBA:12156 +xref: FMA:62434 +xref: HBA:4220 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=159 {source="BIRNLEX:798"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=159 +xref: http://linkedlifedata.com/resource/umls/id/C0018427 +xref: http://www.snomedbrowser.com/Codes/Details/279208003 +xref: NCIT:C96217 +xref: UMLS:C0018427 {source="BIRNLEX:798"} +xref: UMLS:C0018427 {source="ncithesaurus:Cingulate_Gyrus"} +is_a: UBERON:0000200 ! gyrus +relationship: contributes_to_morphology_of UBERON:0000956 ! cerebral cortex +relationship: part_of UBERON:0000349 ! limbic system + +[Term] +id: UBERON:0002968 +name: central gray substance of pons +synonym: "central gray of pons" EXACT [FMA:72470] +synonym: "central gray of the pons" RELATED [BAMS:CGPn] +synonym: "griseum centrale pontis" EXACT LATIN [FMA:72470, FMA:TA] +synonym: "pontine central gray" EXACT [FMA:72470] +xref: BAMS:CGPn +xref: BAMS:PCG +xref: BIRNLEX:799 +xref: DHBA:146034964 +xref: FMA:72470 +xref: HBA:10147 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=567 +xref: MBA:898 +is_a: UBERON:0019263 ! gray matter of hindbrain +is_a: UBERON:0035011 ! central gray substance +intersection_of: UBERON:0035011 ! central gray substance +intersection_of: part_of UBERON:0000988 ! pons +relationship: part_of UBERON:0002573 {source="FMA"} ! pontine reticular formation + +[Term] +id: UBERON:0002969 +name: inferior temporal sulcus +def: "The inferior surface of the temporal lobe is concave, and is continuous posteriorly with the tentorial surface of the occipital lobe. It is traversed by the inferior temporal sulcus, which extends from near the occipital pole behind, to within a short distance of the temporal pole in front, but is frequently subdivided by bridging gyri." [http://en.wikipedia.org/wiki/Inferior_temporal_sulcus] +synonym: "inferior temporal sulcus-1" EXACT [FMA:83784] +synonym: "middle temporal fissure (Crosby)" RELATED [NeuroNames:130] +synonym: "middle temporal sulcus (szikla)" EXACT [] +synonym: "second temporal sulcus" EXACT [FMA:83784] +synonym: "sulcus t2" EXACT [FMA:83784] +synonym: "sulcus temporalis inferior" RELATED LATIN [NeuroNames:130] +synonym: "sulcus temporalis medius (Roberts)" RELATED LATIN [NeuroNames:130] +synonym: "sulcus temporalis secundus" RELATED LATIN [NeuroNames:130] +xref: BAMS:its +xref: BIRNLEX:800 +xref: BM:Tel-Cx-ITS +xref: DHBA:10632 +xref: FMA:83784 +xref: HBA:9379 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=130 {source="BIRNLEX:800"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=130 +xref: http://en.wikipedia.org/wiki/Inferior_temporal_sulcus +xref: http://linkedlifedata.com/resource/umls/id/C0228242 +xref: http://www.snomedbrowser.com/Codes/Details/279346007 +xref: NCIT:C32793 +xref: UMLS:C0228242 {source="ncithesaurus:Inferior_Temporal_Sulcus"} +xref: UMLS:C0228242 {source="BIRNLEX:800"} +is_a: UBERON:0014687 ! temporal sulcus + +[Term] +id: UBERON:0002970 +name: intermediate oculomotor nucleus +synonym: "I3" BROAD ABBREVIATION [BIRNLEX:803, NIFSTD:NeuroNames_abbrevSource] +synonym: "intermediate nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "intermediate oculomotor cell column" EXACT [FMA:72420] +synonym: "interoculomotor nucleus" RELATED [BAMS:I3] +synonym: "nucleus nervi oculomotorii, pars intermedius" RELATED LATIN [NeuroNames:494] +xref: BAMS:I3 +xref: BIRNLEX:803 +xref: DHBA:12203 +xref: FMA:72420 +xref: HBA:9036 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=494 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=494 {source="BIRNLEX:803"} +xref: http://linkedlifedata.com/resource/umls/id/C0175378 +xref: UMLS:C0175378 {source="BIRNLEX:803"} +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus +relationship: part_of UBERON:0001715 {source="NIFSTD"} ! oculomotor nuclear complex + +[Term] +id: UBERON:0002971 +name: periolivary nucleus +def: "A nucleus of the superior olivary complex that surrounds the primary superior olivary nuclei" [http://en.wikipedia.org/wiki/Superior_olivary_complex#Periolivary_nuclei] +synonym: "nuclei periolivares" EXACT LATIN [FMA:72475, FMA:TA] +synonym: "nucleus periolivaris" RELATED LATIN [NeuroNames:574] +synonym: "peri-olivary nuclei" EXACT [FMA:72475] +synonym: "peri-olivary nucleus" EXACT [] +synonym: "periolivary nuclei" RELATED [BAMS:POR] +synonym: "periolivary region" RELATED [BAMS:POR] +synonym: "POI" RELATED ABBREVIATION [DHBA:12464] +synonym: "superior olivary complex periolivary region" RELATED [BAMS:POR] +xref: BAMS:PeO +xref: BAMS:POR +xref: BIRNLEX:804 +xref: DHBA:12464 +xref: EMAPA:35680 +xref: HBA:9179 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=574 {source="BIRNLEX:804"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=574 +xref: http://linkedlifedata.com/resource/umls/id/C0175432 +xref: MA:0002757 +xref: MBA:122 +xref: UMLS:C0175432 {source="BIRNLEX:804"} +is_a: UBERON:0007247 ! nucleus of superior olivary complex + +[Term] +id: UBERON:0002972 +name: centromedian nucleus of thalamus +def: "In the anatomy of the brain, the centromedian nucleus, also known as the centrum medianum, (CM or Cm-Pf) is a part of the intralaminar nucleus (ILN) of the thalamus. There are two centromedian nuclei arranged bilaterally. It contains about 2000 neurons per cubic millimetre and has a volume of about 310 cubic millimetres with 664,000 neurons in total. [WP,unvetted]." [http://en.wikipedia.org/wiki/Centromedian_nucleus] +subset: uberon_slim +synonym: "central magnocellular nucleus of thalamus" EXACT [FMA:62165] +synonym: "central nucleus-1" EXACT [FMA:62165] +synonym: "centre median nucleus" EXACT [FMA:62165] +synonym: "centromedial thalamic nucleus" RELATED [BAMS:CM] +synonym: "centromedian nucleus" EXACT [FMA:62165] +synonym: "centromedian nucleus of thalamus" EXACT [FMA:62165] +synonym: "centromedian thalamic nucleus" EXACT [FMA:62165] +synonym: "centrum medianum" EXACT [BIRNLEX:805] +synonym: "centrum medianum thalami" EXACT [BIRNLEX:805] +synonym: "CMn" BROAD ABBREVIATION [BIRNLEX:805, NIFSTD:NeuroNames_abbrevSource] +synonym: "noyau centre median of Luys" EXACT [] +synonym: "nucleus centralis centralis" EXACT [BIRNLEX:805] +synonym: "nucleus centralis thalami (Hassler)" EXACT [BIRNLEX:805] +synonym: "nucleus centri mediani thalami" EXACT [BIRNLEX:805] +synonym: "nucleus centromedianus" EXACT [BIRNLEX:805] +synonym: "nucleus centromedianus thalami" EXACT [BIRNLEX:805] +synonym: "nucleus centromedianus thalami" RELATED LATIN [http://en.wikipedia.org/wiki/Centromedian_nucleus] +synonym: "nucleus centrum medianum" EXACT [BIRNLEX:805] +xref: BAMS:CM +xref: BAMS:CMn +xref: BIRNLEX:805 +xref: Centromedian:nucleus +xref: DHBA:10449 +xref: DMBA:16402 +xref: EV:0100215 +xref: FMA:62165 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=323 {source="BIRNLEX:805"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=323 +xref: http://linkedlifedata.com/resource/umls/id/C0228351 +xref: http://linkedlifedata.com/resource/umls/id/C0920328 +xref: http://www.snomedbrowser.com/Codes/Details/279162007 +xref: NCIT:C32284 +xref: UMLS:C0228351 {source="BIRNLEX:805"} +xref: UMLS:C0920328 {source="ncithesaurus:Centromedian_Nucleus_of_the_Thalamus"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0002733 {source="FMA"} ! intralaminar nuclear group + +[Term] +id: UBERON:0002973 +name: parahippocampal gyrus +def: "Component of the temporal lobe on the mesial surface, posterior to the entorhinal cortex. The rostral and caudal boundaries are the posterior end of the netorhinal cortex and the caudal portion of the hippocampus, respectively. The medial boudnary is designated as the medial aspect off the temporal lobe and the lateral boundary is the collateral sulcus (Christine Fennema-Notestine)." [BIRNLEX:807] +subset: uberon_slim +synonym: "gyrus hippocampi" RELATED LATIN [NeuroNames:164] +synonym: "gyrus parahippocampalis" RELATED LATIN [http://en.wikipedia.org/wiki/Parahippocampal_gyrus] +synonym: "gyrus parahippocampi" RELATED LATIN [NeuroNames:164] +synonym: "hippocampal convolution" RELATED [BTO:0004380] +synonym: "hippocampal gyrus" EXACT [FMA:61918] +xref: BAMS:PHG +xref: BIRNLEX:807 +xref: BTO:0004380 +xref: CALOHA:TS-2038 +xref: DHBA:12162 +xref: EV:0100181 +xref: FMA:61918 +xref: GAID:634 +xref: HBA:4242 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=164 {source="BIRNLEX:807"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=164 +xref: http://linkedlifedata.com/resource/umls/id/C0228249 +xref: http://www.snomedbrowser.com/Codes/Details/279205000 +xref: MESH:A08.186.211.577.710 +xref: NCIT:C33262 +xref: Parahippocampal:gyrus +xref: UMLS:C0228249 {source="ncithesaurus:Parahippocampal_Gyrus"} +xref: UMLS:C0228249 {source="BIRNLEX:807"} +is_a: UBERON:0000200 ! gyrus +relationship: part_of UBERON:0000349 {source="FMA"} ! limbic system +relationship: part_of UBERON:0001871 {source="FMA"} ! temporal lobe +relationship: part_of UBERON:0002600 {source="FMA", source="NIF"} ! limbic lobe +relationship: surrounds UBERON:0001954 {source="Wikipedia"} ! Ammon's horn + +[Term] +id: UBERON:0002974 +name: molecular layer of cerebellar cortex +def: "The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells" [GO:0021679] +subset: pheno_slim +synonym: "cerebellar molecular layer" EXACT [GO:0021679] +synonym: "cerebellum molecular cell layer" EXACT [] +synonym: "cerebellum molecular layer" EXACT [] +synonym: "fasciculi thalami" RELATED LATIN [NeuroNames:366] +synonym: "stratum moleculare corticis cerebelli" EXACT LATIN [FMA:83897, FMA:TA] +synonym: "thalamic fiber tracts" RELATED [NeuroNames:366] +xref: BAMS:thf +xref: BIRNLEX:810 +xref: CALOHA:TS-1248 +xref: EMAPA:35221 +xref: FMA:83897 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=366 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=366 {source="BIRNLEX:810"} +xref: http://linkedlifedata.com/resource/umls/id/C0228469 +xref: http://linkedlifedata.com/resource/umls/id/C1289474 +xref: http://linkedlifedata.com/resource/umls/id/C1709064 +xref: http://www.snomedbrowser.com/Codes/Details/369045002 +xref: MA:0000996 +xref: MBA:1144 +xref: NCIT:C49139 +xref: UMLS:C0228469 {source="BIRNLEX:810"} +xref: UMLS:C1289474 {source="BIRNLEX:810"} +xref: UMLS:C1709064 {source="ncithesaurus:Molecular_Layer_of_the_Cerebellum"} +is_a: UBERON:0004130 ! cerebellar layer +intersection_of: UBERON:0004130 ! cerebellar layer +intersection_of: in_superficial_part_of UBERON:0002129 ! cerebellar cortex +relationship: in_superficial_part_of UBERON:0002129 ! cerebellar cortex + +[Term] +id: UBERON:0002975 +name: medial oculomotor nucleus +synonym: "M3" BROAD ABBREVIATION [BIRNLEX:813, NIFSTD:NeuroNames_abbrevSource] +synonym: "medial nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "medial oculomotor cell column" EXACT [FMA:72421] +synonym: "nucleus nervi oculomotorii, pars medialis" RELATED LATIN [NeuroNames:495] +xref: BAMS:M3 +xref: BIRNLEX:813 +xref: DHBA:12204 +xref: FMA:72421 +xref: HBA:9037 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=495 {source="BIRNLEX:813"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=495 +xref: http://linkedlifedata.com/resource/umls/id/C0175379 +xref: UMLS:C0175379 {source="BIRNLEX:813"} +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus +relationship: part_of UBERON:0001715 {source="NIFSTD"} ! oculomotor nuclear complex + +[Term] +id: UBERON:0002976 +name: preolivary nucleus +synonym: "nucleus preolivaris" RELATED LATIN [NeuroNames:573] +synonym: "preolivary nuclei" EXACT [FMA:72474] +xref: BAMS:PrO +xref: BIRNLEX:814 +xref: DHBA:266441709 +xref: FMA:72474 +xref: HBA:9180 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=573 {source="BIRNLEX:814"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=573 +xref: http://linkedlifedata.com/resource/umls/id/C0175431 +xref: UMLS:C0175431 {source="BIRNLEX:814"} +is_a: UBERON:0007247 ! nucleus of superior olivary complex + +[Term] +id: UBERON:0002977 +name: triangular septal nucleus +synonym: "nucleus septalis triangularis" RELATED LATIN [NeuroNames:263] +synonym: "nucleus triangularis septi" EXACT LATIN [FMA:61880, FMA:TA] +synonym: "triangular nucleus of septum" EXACT [FMA:61880] +synonym: "triangular nucleus of the septum" RELATED [NeuroNames:263] +synonym: "triangular nucleus septum (cajal)" EXACT [BIRNLEX:816] +xref: BAMS:STN +xref: BAMS:TRS +xref: BAMS:TS +xref: BIRNLEX:816 +xref: BM:Tel-Spt-STN +xref: DHBA:266441491 +xref: DMBA:15779 +xref: FMA:61880 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=263 {source="BIRNLEX:816"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=263 +xref: http://linkedlifedata.com/resource/umls/id/C0262351 +xref: MBA:581 +xref: UMLS:C0262351 {source="BIRNLEX:816"} +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0002663 {source="NIFSTD"} ! septal nuclear complex + +[Term] +id: UBERON:0002978 +name: oral part of ventral lateral nucleus +synonym: "nucleus lateralis oralis situs principalis" EXACT [BIRNLEX:817] +synonym: "nucleus ventralis lateralis, pars oralis" EXACT [BIRNLEX:817] +synonym: "nucleus ventrooralis externus, anterior part (van buren)" EXACT [BIRNLEX:817] +synonym: "oral part of the ventral lateral nucleus" RELATED [NeuroNames:338] +synonym: "subnucleus rostralis" EXACT [BIRNLEX:817] +synonym: "ventral anterior nucleus, pars densicellularis" EXACT [FMA:62193] +synonym: "ventral lateral anterior nucleus" EXACT [FMA:62193] +synonym: "ventral lateral nucleus, oral part" EXACT [FMA:62193] +synonym: "ventral lateral thalamic nucleus, oral part" EXACT [FMA:62193] +synonym: "VLO" BROAD ABBREVIATION [BIRNLEX:817, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:VLO +xref: BIRNLEX:817 +xref: FMA:62193 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=338 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=338 {source="BIRNLEX:817"} +xref: http://linkedlifedata.com/resource/umls/id/C0175280 +xref: UMLS:C0175280 {source="BIRNLEX:817"} +is_a: UBERON:0019269 ! gray matter of diencephalon +relationship: part_of UBERON:0001925 ! ventral lateral nucleus of thalamus + +[Term] +id: UBERON:0002979 +name: Purkinje cell layer of cerebellar cortex +def: "The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells." [GO:0021680] +subset: pheno_slim +synonym: "cerebellar Purkinje cell layer" EXACT [FMA:83896, GO:0021694] +synonym: "cerebellum Purkinje cell layer" EXACT [] +synonym: "cerebellum Purkinje layer" EXACT [] +synonym: "nuclei reticulares (thalami)" RELATED LATIN [NeuroNames:365] +synonym: "nucleus reticularis" RELATED LATIN [NeuroNames:365] +synonym: "nucleus reticulatus (thalami)" RELATED LATIN [NeuroNames:365] +synonym: "nucleus thalamicus reticularis" RELATED LATIN [NeuroNames:365] +synonym: "Purkinje cell layer" EXACT [FMA:83896] +synonym: "reticular nucleus thalamus (Arnold)" RELATED [NeuroNames:365] +synonym: "reticulatum thalami (Hassler)" RELATED LATIN [NeuroNames:365] +xref: BIRNLEX:818 +xref: BTO:0004909 +xref: EMAPA:35223 +xref: FMA:83896 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=365 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=365 {source="BIRNLEX:818"} +xref: http://linkedlifedata.com/resource/umls/id/C0228469 +xref: http://linkedlifedata.com/resource/umls/id/C1289475 +xref: http://linkedlifedata.com/resource/umls/id/C1709776 +xref: http://www.snomedbrowser.com/Codes/Details/369046001 +xref: MA:0000997 +xref: MBA:1145 +xref: NCIT:C49140 +xref: UMLS:C0228469 {source="BIRNLEX:818"} +xref: UMLS:C1289475 {source="BIRNLEX:818"} +xref: UMLS:C1709776 {source="ncithesaurus:Purkinje_Cell_Layer_of_the_Cerebellum"} +is_a: UBERON:0004130 ! cerebellar layer +intersection_of: UBERON:0004130 ! cerebellar layer +intersection_of: immediately_deep_to UBERON:0002974 ! molecular layer of cerebellar cortex +intersection_of: immediately_superficial_to UBERON:0002956 ! granular layer of cerebellar cortex +relationship: immediately_deep_to UBERON:0002974 ! molecular layer of cerebellar cortex +relationship: immediately_superficial_to UBERON:0002956 ! granular layer of cerebellar cortex + +[Term] +id: UBERON:0002980 +name: opercular part of inferior frontal gyrus +def: "Component of the inferior frontal gyrus.defined as the first gyrus from the precentral gyrus." [BIRNLEX:823] +synonym: "gyrus frontalis inferior, pars opercularis" EXACT LATIN [FMA:61981, FMA:TA] +synonym: "inferior frontal gyrus, opercular part" RELATED [BAMS:IFGOp] +synonym: "inferior frontal gyrus, pars opercularis" BROAD [http://orcid.org/0000-0001-6755-0259] +synonym: "opercular portion of inferior frontal gyrus" EXACT [FMA:61981] +synonym: "pars opercularis" EXACT LATIN [FMA:61981, FMA:TA] +synonym: "pars opercularis gyri frontalis inferioris" EXACT [BIRNLEX:823] +synonym: "pars posterior of inferior frontal gyrus" EXACT LATIN [FMA:61981, FMA:TA] +synonym: "posterior part of inferior frontal gyrus" EXACT [FMA:61981] +xref: BAMS:IFGOp +xref: BAMS:OpIFG +xref: BIRNLEX:823 +xref: DHBA:12119 +xref: FMA:61981 +xref: HBA:4041 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=87 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=87 {source="BIRNLEX:823"} +xref: http://en.wikipedia.org/wiki/Opercular_part_of_inferior_frontal_gyrus +xref: http://linkedlifedata.com/resource/umls/id/C0262296 +xref: UMLS:C0262296 {source="BIRNLEX:823"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002998 {source="FMA"} ! inferior frontal gyrus + +[Term] +id: UBERON:0002981 +name: pulvinar nucleus +def: "One of a set of nuclei located in the posterior thalamus, that projects to all or nearly all extra-striate visual areas." [BIRNLEX:824] +subset: uberon_slim +synonym: "nuclei pulvinares" EXACT LATIN [FMA:62178, FMA:TA] +synonym: "nucleus pulvinaris" RELATED LATIN [NeuroNames:328] +synonym: "nucleus pulvinaris thalami" RELATED LATIN [NeuroNames:328] +synonym: "posterior nucleus (P)" RELATED [NeuroNames:328] +synonym: "Pul" BROAD ABBREVIATION [BIRNLEX:824, NIFSTD:NeuroNames_abbrevSource] +synonym: "pulvinar" EXACT [FMA:62178] +synonym: "pulvinar nuclei" EXACT [FMA:62178] +synonym: "pulvinar thalami" EXACT [BIRNLEX:824] +synonym: "pulvinar thalamus" RELATED [NeuroNames:328] +xref: BAMS:PUL +xref: BAMS:Pul +xref: BAMS:Pulv +xref: BIRNLEX:824 +xref: BM:Die-Th-Pl +xref: BTO:0004352 +xref: DHBA:10409 +xref: EV:0100213 +xref: FMA:62178 +xref: GAID:662 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=328 {source="BIRNLEX:824"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=328 +xref: http://linkedlifedata.com/resource/umls/id/C0152347 +xref: http://www.snomedbrowser.com/Codes/Details/279157006 +xref: MESH:A08.186.211.730.385.826.701.485.600 +xref: Pulvinar:nuclei +xref: UMLS:C0152347 {source="BIRNLEX:824"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0002736 {source="FMA"} ! lateral nuclear group of thalamus + +[Term] +id: UBERON:0002982 +name: inferior pulvinar nucleus +def: "One of four subdivisions recognized in the primate pulvinar based on initially on topography, located ventrally between the medial and lateral geniculate bodies (Carpenter, A core text of neuroanatomy, 3rd ed., 1985, pg 238)" [BIRNLEX:830] +synonym: "IPul" BROAD ABBREVIATION [BIRNLEX:830, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus pulvinaris inferior" EXACT [BIRNLEX:830] +synonym: "nucleus pulvinaris inferior thalami" EXACT [BIRNLEX:830] +synonym: "nucleus pulvinaris thalami, pars inferior" EXACT [BIRNLEX:830] +xref: BAMS:IPul +xref: BAMS:Ipul +xref: BIRNLEX:830 +xref: BM:Die-Th-Pl-Pli +xref: DHBA:10413 +xref: FMA:62183 +xref: HBA:4414 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=332 {source="BIRNLEX:830"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=332 +xref: http://linkedlifedata.com/resource/umls/id/C0228346 +xref: UMLS:C0228346 {source="BIRNLEX:830"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0002981 ! pulvinar nucleus + +[Term] +id: UBERON:0002983 +name: lateral posterior nucleus of thalamus +def: "The lateral posterior nucleus is a nucleus of the thalamus. It acts in concert with the pulvinar." [http://en.wikipedia.org/wiki/Lateral_posterior_nucleus_of_thalamus] +synonym: "lateral posterior complex" RELATED [BAMS:LP] +synonym: "lateral posterior nucleus" EXACT [FMA:62177] +synonym: "lateral posterior nucleus of thalamus" EXACT [FMA:62177] +synonym: "lateral posterior nucleus of the thalamus" EXACT [BIRNLEX:835] +synonym: "lateral posterior thalamic nucleus" EXACT [FMA:62177] +synonym: "laterodorsal nucleus, caudal part" EXACT [FMA:62177] +synonym: "LP" BROAD ABBREVIATION [BIRNLEX:835, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus dorso-caudalis" EXACT [BIRNLEX:835] +synonym: "nucleus dorsocaudalis (Hassler)" EXACT [BIRNLEX:835] +synonym: "nucleus lateralis posterior" EXACT [BIRNLEX:835] +synonym: "nucleus lateralis posterior thalami" EXACT [BIRNLEX:835] +synonym: "nucleus lateralis thalami posterior" EXACT [BIRNLEX:835] +synonym: "posterior lateral nucleus of thalamus" EXACT [FMA:62177] +xref: BAMS:LP +xref: BIRNLEX:835 +xref: BM:Die-Th-LP +xref: BTO:0004351 +xref: DHBA:10408 +xref: DMBA:16435 +xref: EV:0100212 +xref: FMA:62177 +xref: HBA:4410 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=327 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=327 {source="BIRNLEX:835"} +xref: http://en.wikipedia.org/wiki/Lateral_posterior_nucleus_of_thalamus +xref: http://linkedlifedata.com/resource/umls/id/C0228341 +xref: http://www.snomedbrowser.com/Codes/Details/279155003 +xref: MBA:218 +xref: NCIT:C32944 +xref: UMLS:C0228341 {source="BIRNLEX:835"} +xref: UMLS:C0228341 {source="ncithesaurus:Lateral_Posterior_Nucleus_of_the_Thalamus"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0002736 {source="NIFSTD"} ! lateral nuclear group of thalamus + +[Term] +id: UBERON:0002984 +name: lateral dorsal nucleus +def: "The lateral dorsal nucleus is a nucleus of the thalamus. It acts in concert with the anterior nuclei of thalamus. It receives significant input from several subdivisions of visual cortex, and has a primary output to parietal cortex on the dorsolateral cortical convexity, giving it access to limbic forebrain nuclei important for emotion and behavior functions." [http://en.wikipedia.org/wiki/Lateral_dorsal_nucleus_of_thalamus] +synonym: "dorsal thalamus, lateral group" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "lateral dorsal nucleus of thalamus" EXACT [FMA:62176] +synonym: "lateral dorsal nucleus of the thalamus" RELATED [NeuroNames:326] +synonym: "lateral dorsal thalamic nucleus" EXACT [FMA:62176] +synonym: "lateral group of nuclei, dorsal division" RELATED [HBA:DTLd] +synonym: "laterodorsal nucleus nucleus of thalamus" EXACT [BIRNLEX:838] +synonym: "laterodorsal nucleus of the thalamus" RELATED [NeuroNames:326] +synonym: "laterodorsal nucleus thalamic nucleus" EXACT [BIRNLEX:838] +synonym: "laterodorsal nucleus, superficial part" EXACT [FMA:62176] +synonym: "laterodorsal thalamic nucleus" EXACT [FMA:62176] +synonym: "LD" BROAD ABBREVIATION [BIRNLEX:838, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus dorsalis lateralis thalami" EXACT LATIN [FMA:62176, FMA:TA] +synonym: "nucleus dorsalis superficialis (Hassler)" EXACT [BIRNLEX:838] +synonym: "nucleus dorsolateralis thalami" EXACT [BIRNLEX:838] +synonym: "nucleus lateralis dorsalis" EXACT [BIRNLEX:838] +synonym: "nucleus lateralis dorsalis of thalamus" EXACT [BIRNLEX:838] +synonym: "nucleus lateralis dorsalis thalami" EXACT [BIRNLEX:838] +synonym: "nucleus lateralis thalami dorsalis" EXACT [BIRNLEX:838] +xref: BAMS:LD +xref: BIRNLEX:838 +xref: BM:Die-Th-LD +xref: BTO:0004349 +xref: BTO:0004350 +xref: DHBA:10396 +xref: EV:0100211 +xref: FMA:62176 +xref: HBA:4399 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=326 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=326 {source="BIRNLEX:838"} +xref: http://en.wikipedia.org/wiki/Lateral_dorsal_nucleus_of_thalamus +xref: http://linkedlifedata.com/resource/umls/id/C0228342 +xref: http://www.snomedbrowser.com/Codes/Details/279154004 +xref: MBA:155 +xref: UMLS:C0228342 {source="BIRNLEX:838"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0002736 {source="NIFSTD"} ! lateral nuclear group of thalamus + +[Term] +id: UBERON:0002985 +name: ventral nucleus of medial geniculate body +def: "Ventral division of medial geniculate body, first described by Morest (1964) in the cat, but found in primate, mouse and rat as well. It begins midway in the posterior third of the medial geniculate in the cat and is prominant anteriorly. The boundary between the dorsal and ventral divisions is demarcated in rat by a thick horizontally oriented axon bundle, the midgeniculate bundle (Webster, 1995, fig 16)." [BIRNLEX:845] +synonym: "medial geniculate complex ventral part" RELATED [BAMS:MGv] +synonym: "medial geniculate complex, ventral part" EXACT [FMA:62217] +synonym: "medial geniculate nucleus ventral part" RELATED [BAMS:MGv] +synonym: "medial geniculate nucleus, ventral part" EXACT [FMA:62217] +synonym: "medial nucleus of medial geniculate complex" EXACT [BIRNLEX:845] +synonym: "MGV" BROAD ABBREVIATION [BIRNLEX:845, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus corporis geniculati medialis, pars ventralis" EXACT [BIRNLEX:845] +synonym: "nucleus geniculatus medialis fasciculosis (Hassler)" EXACT LATIN [FMA:62217, FMA:TA] +synonym: "nucleus geniculatus medialis fasciculosus (Hassler)" EXACT [BIRNLEX:845] +synonym: "nucleus geniculatus medialis pars ventralis" EXACT [BIRNLEX:845] +synonym: "nucleus ventralis corporis geniculati medialis" EXACT LATIN [FMA:62217, FMA:TA] +synonym: "ventral nucleus" RELATED [NeuroNames:357] +synonym: "ventral nucleus of medial geniculate complex" EXACT [FMA:62217] +synonym: "ventral nucleus of the medial geniculate body" RELATED [NeuroNames:357] +synonym: "ventral principal nucleus of medial geniculate body" EXACT [FMA:62217] +synonym: "VMG" BROAD ABBREVIATION [BIRNLEX:845, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:MGV +xref: BAMS:MGv +xref: BAMS:VMG +xref: BIRNLEX:845 +xref: BM:Die-Th-MG-MGv +xref: BTO:0002671 +xref: DHBA:10438 +xref: FMA:62217 +xref: HBA:4445 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=357 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=357 {source="BIRNLEX:845"} +xref: http://linkedlifedata.com/resource/umls/id/C0175295 +xref: MBA:1079 +xref: UMLS:C0175295 {source="BIRNLEX:845"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0001927 ! medial geniculate body + +[Term] +id: UBERON:0002986 +name: obsolete neurofilament +def: "." [http://en.wikipedia.org/wiki/Neurofilament] +subset: uberon_slim +synonym: "neuronal intermediate filament" EXACT [FMA:63859] +is_obsolete: true +replaced_by: GO:0005883 +consider: BIRNLEX:846 +consider: FMA:63859 +consider: NCIT:C13263 +consider: NIF_Subcellular:sao1316272517 +consider: UMLS:C0027834 +consider: Wikipedia:Neurofilament + +[Term] +id: UBERON:0002987 +name: anterior spinocerebellar tract +def: "Runs through the ventrolateral surface of the spinal cord. It enters the cerebellum through the superior cerebellar peduncle. It crosses the midline at the segmental level and recrosses in the cerebellum. Its terminals are distributed in the cerebellar anterior lobe, preferentially in the ipsilateral intermediate cortex. Rostrally, it extends to lobule II." [BIRNLEX:848] +subset: uberon_slim +synonym: "Gower's tract" EXACT [BIRNLEX:848] +synonym: "Gowers' tract" EXACT [FMA:72642] +synonym: "tractus spinocerebellaris anterior" RELATED LATIN [NeuroNames:808] +synonym: "tractus spinocerebellaris ventralis" RELATED LATIN [NeuroNames:808] +synonym: "ventral spinocerebellar tract" EXACT [FMA:72642] +synonym: "ventral spinocerebellar tract (Gowers)" RELATED [NeuroNames:808] +xref: BAMS:asc +xref: BAMS:sctv +xref: BAMS:vsc +xref: BIRNLEX:848 +xref: DHBA:12801 +xref: DMBA:17805 +xref: FMA:72642 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=808 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=808 {source="BIRNLEX:848"} +xref: http://en.wikipedia.org/wiki/Ventral_spinocerebellar_tract +xref: http://linkedlifedata.com/resource/umls/id/C0175561 +xref: http://www.snomedbrowser.com/Codes/Details/369285001 +xref: MBA:866 +xref: UMLS:C0175561 {source="BIRNLEX:848"} +is_a: UBERON:0007702 ! tract of brain +relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata +relationship: part_of UBERON:0005413 ! spinocerebellar tract + +[Term] +id: UBERON:0002988 +name: first dorsal interosseous of manus +subset: pheno_slim +synonym: "abductor indicis" EXACT [FMA:37424] +synonym: "first dorsal interosseous muscle of hand" RELATED [FMA:37424] +synonym: "first dorsal interosseous of hand" EXACT [FMA:37424] +xref: FMA:37424 +xref: http://www.snomedbrowser.com/Codes/Details/245003002 +is_a: UBERON:0001503 {source="FMA"} ! dorsal interosseous of manus + +[Term] +id: UBERON:0002989 +name: anconeus muscle +def: "A small muscle on the posterior aspect of the elbow joint." [http://en.wikipedia.org/wiki/Anconeus_muscle] +comment: Some consider anconeus to be a continuation of the triceps brachii muscle. Some sources consider it to be part of the posterior compartment of the arm, while others consider it part of the posterior compartment of the forearm. +synonym: "aconeus" RELATED [EMAPA:36181] +synonym: "anconeus" EXACT [http://en.wikipedia.org/wiki/Anconeus_muscle] +synonym: "m. anconeus" EXACT [AAO:0010714] +synonym: "musculus anconaeus" EXACT LATIN [http://en.wikipedia.org/wiki/Anconeus_muscle] +synonym: "musculus anconeus" EXACT LATIN [http://en.wikipedia.org/wiki/Anconeus_muscle] +xref: AAO:0010714 +xref: Anconeus:muscle +xref: EMAPA:36181 +xref: FMA:37704 +xref: http://www.snomedbrowser.com/Codes/Details/244993003 +is_a: UBERON:0004255 {source="FMA"} ! forelimb stylopod muscle +relationship: has_muscle_insertion UBERON:0006810 {notes="lateral surface of the olecranon process and the superior part of the posterior ulna distally", source="dbpedia"} ! olecranon +relationship: has_muscle_origin UBERON:0006807 {notes="lateral epicondyle of the humerus proximally", source="dbpedia"} ! ectepicondyle of humerus +relationship: innervated_by UBERON:0001492 {source="dbpedia"} ! radial nerve + +[Term] +id: UBERON:0002990 +name: mammillothalamic tract of hypothalamus +def: "Part of mammillothalamic tract contained within the hypothalamus" [BIRNLEX:855] +subset: pheno_slim +synonym: "fasciculus mamillothalamicus (hypothalami)" RELATED LATIN [NeuroNames:424] +synonym: "mammillothalamic tract of the hypothalamus" RELATED [NeuroNames:424] +synonym: "MTHH" BROAD ABBREVIATION [BIRNLEX:855, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:mthh +xref: BIRNLEX:855 +xref: EMAPA:37904 {source="MA:th"} +xref: FMA:62059 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=424 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=424 {source="BIRNLEX:855"} +xref: http://linkedlifedata.com/resource/umls/id/C0228375 +xref: http://linkedlifedata.com/resource/umls/id/C1289566 +xref: http://www.snomedbrowser.com/Codes/Details/369139008 +xref: UMLS:C0228375 {source="BIRNLEX:855"} +xref: UMLS:C1289566 {source="BIRNLEX:855"} +is_a: UBERON:0011591 ! tract of diencephalon +relationship: part_of UBERON:0006695 ! mammillary axonal complex + +[Term] +id: UBERON:0002991 +name: supramammillary commissure +synonym: "commissura supramamillaris" RELATED LATIN [NeuroNames:421] +synonym: "commissura supramammillaris" RELATED LATIN [NeuroNames:421] +synonym: "commissure of forel" EXACT [] +synonym: "commissure supramammillary" RELATED [FMA:62056] +synonym: "commissure y" EXACT [FMA:62056] +synonym: "decussation supramamilaris" EXACT LATIN [FMA:62056, FMA:TA] +synonym: "decussation supramamillaris" RELATED LATIN [NeuroNames:421] +synonym: "postmammillary decussation" EXACT [FMA:62056] +synonym: "SUMX" BROAD ABBREVIATION [BIRNLEX:859, NIFSTD:NeuroNames_abbrevSource] +synonym: "supramammillary decussation" EXACT [FMA:62056] +xref: BAMS:smd +xref: BAMS:sumx +xref: BIRNLEX:859 +xref: FMA:62056 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=421 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=421 {source="BIRNLEX:859"} +xref: http://linkedlifedata.com/resource/umls/id/C0228379 +xref: http://www.snomedbrowser.com/Codes/Details/369148003 +xref: MBA:341 +xref: UMLS:C0228379 {source="BIRNLEX:859"} +is_a: UBERON:0011590 {source="FMA"} ! commissure of diencephalon +relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic region + +[Term] +id: UBERON:0002992 +name: paratenial nucleus +def: "One of the median nuclei of the thalamus, situated ventral and medial to the stria medullaris." [BTO:0002457] +synonym: "nuclei parataeniales thalami" RELATED LATIN [NeuroNames:307] +synonym: "nucleus parataenialis" EXACT LATIN [FMA:62151, FMA:TA] +synonym: "nucleus parataenialis" EXACT [BTO:0002457] +synonym: "nucleus parataenialis (Hassler)" RELATED LATIN [NeuroNames:307] +synonym: "nucleus parataenialis thalami" RELATED [BTO:0002457] +synonym: "nucleus paratenialis thalami" RELATED LATIN [NeuroNames:307] +synonym: "parataenial nucleus" EXACT [FMA:62151] +synonym: "paratenial nucleus of thalamus" RELATED [BTO:0002457] +synonym: "paratenial nucleus of the thalamus" RELATED [NeuroNames:307] +synonym: "paratenial thalamic nucleus" EXACT [FMA:62151] +synonym: "PT" BROAD ABBREVIATION [BIRNLEX:860, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:PT +xref: BIRNLEX:860 +xref: BTO:0002457 +xref: DHBA:10404 +xref: DMBA:16410 +xref: FMA:62151 +xref: HBA:4405 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=307 {source="BIRNLEX:860"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=307 +xref: http://linkedlifedata.com/resource/umls/id/C0175252 +xref: http://www.snomedbrowser.com/Codes/Details/422800004 +xref: MBA:15 +xref: UMLS:C0175252 {source="BIRNLEX:860"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0002705 {source="ABA", source="FMA", source="NIF"} ! midline nuclear group + +[Term] +id: UBERON:0002993 +name: inferior central nucleus +subset: uberon_slim +synonym: "inferior central nucleus (of roller)" EXACT [FMA:72466] +synonym: "inferior central nucleus of raphe" EXACT [FMA:72466] +synonym: "inferior central tegmental nucleus" EXACT [FMA:72466] +synonym: "nucleus centralis inferior" EXACT LATIN [FMA:72466, FMA:TA] +synonym: "nucleus tegmentalis centralis inferior" EXACT LATIN [FMA:72466, FMA:TA] +xref: BIRNLEX:861 +xref: FMA:72466 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=563 +is_a: UBERON:0007413 {source="FMA"} ! nucleus of pontine reticular formation + +[Term] +id: UBERON:0002995 +name: substantia nigra pars lateralis +synonym: "internal capsule (Burdach)" RELATED [NeuroNames:198] +synonym: "lateral part of substantia nigra" EXACT [FMA:76844] +synonym: "pars lateralis" EXACT [BIRNLEX:866] +synonym: "pars lateralis substantiae nigrae" EXACT LATIN [FMA:76844, FMA:TA] +synonym: "substantia nigra lateral part" RELATED [BAMS:SNl] +synonym: "substantia nigra lateral part" RELATED [BAMS:SNL] +synonym: "substantia nigra, lateral division" RELATED [BAMS:SNL] +synonym: "substantia nigra, lateral part" EXACT [ABA:SNI] +synonym: "substantia nigra, pars lateralis" RELATED [BAMS:SNL] +xref: ABA:SNI +xref: BAMS:SNL +xref: BAMS:SNl +xref: BIRNLEX:866 +xref: DHBA:12257 +xref: EMAPA:35837 +xref: FMA:76844 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=198 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=198 {source="BIRNLEX:866"} +xref: MA:0001065 +xref: MBA:615 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0002038 {source="MA"} ! substantia nigra + +[Term] +id: UBERON:0002996 +name: nucleus of optic tract +def: "Predominantly gray matter structure consisting of large multipoloar cells lying aong axons of the brachium of the superior colliculus, lyaing adjaent to the dorsal terminal nucleus of the accessory optic system. In several species, cells of this nucleus receive input from the contralateral retina (Sefton and Dreher in Paxinos, G. The rat nervous system, 1995, pg. 862)." [BIRNLEX:868] +synonym: "large-celled nucleus of optic tract" EXACT [FMA:72403] +synonym: "lentiform nucleus of pretectal area" EXACT [FMA:72403] +synonym: "nucleus magnocellularis tractus optici" RELATED LATIN [NeuroNames:470] +synonym: "nucleus of the optic tract" EXACT [BIRNLEX:868] +synonym: "nucleus tractus optici" RELATED LATIN [NeuroNames:470] +synonym: "optic tract nucleus" EXACT [FMA:72403] +xref: BAMS:NOT +xref: BAMS:OTN +xref: BIRNLEX:868 +xref: FMA:72403 +xref: HBA:9080 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=470 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=470 {source="BIRNLEX:868"} +xref: http://linkedlifedata.com/resource/umls/id/C0175356 +xref: MBA:628 +xref: UMLS:C0175356 {source="BIRNLEX:868"} +is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum +is_a: UBERON:0014450 ! pretectal nucleus + +[Term] +id: UBERON:0002997 +name: nucleus of medial eminence +synonym: "medial eminence nucleus" EXACT [FMA:72467] +synonym: "nucleus eminentiae teretis" EXACT LATIN [FMA:72467, FMA:TA] +synonym: "nucleus of eminentia teres" EXACT [FMA:72467] +xref: BAMS:MeE +xref: BIRNLEX:870 +xref: FMA:72467 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=564 +is_a: UBERON:0002308 ! nucleus of brain + +[Term] +id: UBERON:0002998 +name: inferior frontal gyrus +def: "Component of the frontal lobe, lateral aspect. The rostral boundary is the first appearance of the inferior frontal sulcus whereas the caudal boundary is the precentral gyrus. The medial and lateral boundaries are the lateral bank of the inferior frontal sulcus and the medial bank of the lateral orbital sulcus and/or the circular insular sulcus respectively (Christein Fennema-Notestine)." [BIRNLEX:873] +subset: uberon_slim +synonym: "gyrus F3" RELATED LATIN [NeuroNames:85] +synonym: "gyrus frontalis inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_frontal_gyrus] +synonym: "gyrus frontalis tertius" RELATED LATIN [NeuroNames:85] +synonym: "inferior frontal convolution" EXACT [FMA:61860] +synonym: "regio subfrontalis" RELATED LATIN [NeuroNames:85] +xref: BAMS:IFG +xref: BIRNLEX:873 +xref: BTO:0004835 +xref: DHBA:12117 +xref: FMA:61860 +xref: HBA:4035 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=85 {source="BIRNLEX:873"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=85 +xref: http://en.wikipedia.org/wiki/Inferior_frontal_gyrus +xref: http://linkedlifedata.com/resource/umls/id/C0152298 +xref: http://www.snomedbrowser.com/Codes/Details/362333004 +xref: NCIT:C32774 +xref: ncithesaurus:Inferior_Frontal_Gyrus +xref: UMLS:C0152298 {source="BIRNLEX:873"} +xref: UMLS:C0152298 {source="ncithesaurus:Inferior_Frontal_Convolution"} +is_a: UBERON:0015593 ! frontal gyrus + +[Term] +id: UBERON:0002999 +name: oral pontine reticular nucleus +def: "The oral pontine reticular nucleus is delineated from its caudal brother, with which it shares its first three names. This nucleus tapers into the lower mesencephalic reticular formation and contains sporadic giant cells. Different populations of the pontis oralis have displayed discharge patterns which coordinate with phasic movements to and from paradoxical sleep. From this information it has been implied that the n.r. pontis oralis is involved in the mediation of changing to and from REM sleep. [WP,unvetted]." [http://en.wikipedia.org/wiki/Oral_pontine_reticular_nucleus] +subset: uberon_slim +synonym: "nucleus reticularis pontis oralis" RELATED LATIN [http://en.wikipedia.org/wiki/Oral_pontine_reticular_nucleus] +synonym: "pontine reticular nucleus rostral part" RELATED [BAMS:PRNr] +synonym: "pontine reticular nucleus, oral part" RELATED [BAMS:PnO] +synonym: "pontine reticular nucleus, rostral part" EXACT [FMA:72468] +xref: BAMS:PnO +xref: BAMS:PRNr +xref: BIRNLEX:875 +xref: DHBA:12494 +xref: FMA:72468 +xref: HBA:9166 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=565 +xref: http://en.wikipedia.org/wiki/Oral_pontine_reticular_nucleus +xref: MBA:552 +is_a: UBERON:0007413 {source="FMA"} ! nucleus of pontine reticular formation + +[Term] +id: UBERON:0003000 +name: obsolete intermediate filament +def: "." [http://en.wikipedia.org/wiki/Intermediate_filament] +subset: uberon_slim +is_obsolete: true +replaced_by: GO:0005882 +consider: BIRNLEX:879 +consider: FMA:63851 +consider: GAID:1079 +consider: MESH:A11.284.195.190.750.410 +consider: NCIT:C13248 +consider: NIF_Subcellular:sao952483289 +consider: UMLS:C0021770 +consider: Wikipedia:Intermediate_filament + +[Term] +id: UBERON:0003001 +name: nervous system lemniscus +def: "A bundle or band of sensory nerve fibers." [BIRNLEX:881, http://en.wikipedia.org/wiki/Lemniscus_(anatomy)] +subset: uberon_slim +synonym: "lemniscus" EXACT [BIRNLEX:881, FMA:83676] +synonym: "neuraxis lemniscus" EXACT [FMA:83676] +xref: BIRNLEX:881 +xref: FMA:83676 +xref: Lemniscus:(anatomy) +is_a: UBERON:0000122 ! neuron projection bundle +is_a: UBERON:0011215 ! central nervous system cell part cluster +relationship: part_of UBERON:0002316 ! white matter + +[Term] +id: UBERON:0003002 +name: medial lemniscus +def: "Fiber tract arising predominantly from neurons in the nucleus gracilis and nucleus cuneatus in the medulla, projecting to thalamus. Fibers cross in the decussation of the medial lemniscus." [BIRNLEX:887] +subset: uberon_slim +synonym: "lemniscus medialis" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_lemniscus] +synonym: "Reil's band" RELATED [http://en.wikipedia.org/wiki/Medial_lemniscus] +synonym: "Reil's ribbon" RELATED [http://en.wikipedia.org/wiki/Medial_lemniscus] +xref: BAMS:MEL +xref: BAMS:ml +xref: BIRNLEX:887 +xref: BM:LM +xref: DHBA:12763 +xref: DMBA:17776 +xref: FMA:83675 +xref: HBA:12961 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1583 +xref: http://www.snomedbrowser.com/Codes/Details/362398006 +xref: MBA:697 +xref: Medial:lemniscus +is_a: UBERON:0003001 ! nervous system lemniscus +relationship: part_of UBERON:0002298 ! brainstem +relationship: part_of UBERON:0018237 ! dorsal column-medial lemniscus pathway + +[Term] +id: UBERON:0003003 +name: obsolete microfilament +synonym: "actin filament" EXACT [FMA:63850] +synonym: "microfilament" EXACT [FMA:63850] +synonym: "microfilamentum" EXACT [FMA:63850] +is_obsolete: true +consider: FMA:63850 +consider: GAID:1080 +consider: GO:0005884 +consider: MESH:A11.284.195.190.750.510 +consider: NCIT:C13255 +consider: NIF_Subcellular:sao2006047981 +consider: UMLS:C0025979 {source="ncithesaurus:Actin_Filament"} +consider: Wikipedia:Microfilament + +[Term] +id: UBERON:0003004 +name: median raphe nucleus +def: "The median raphe nucleus (or superior central nucleus) is composed of polygonal, fusiform and pyriform neurons and exists rostral to the nucleus raphe pontis. One trait of the MRN is its inhibition by lysergic acid diethylamide and psilocin, two serotonin antagonist hallucinogens. The inactivation of the nucleus centralis superior via LSD produces a dose dependent inactivation in the MRN, but not in the raphe pallidus[WP,unvetted]." [http://en.wikipedia.org/wiki/Median_raphe_nucleus, https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3248146&group_id=36855] +subset: uberon_slim +synonym: "cell group b8" EXACT [] +synonym: "medial raphe nucleus" EXACT [] +synonym: "median nucleus of the raphe" EXACT [FMA:72465] +synonym: "MRN" EXACT [] +synonym: "nucleus centralis superior" RELATED LATIN [http://en.wikipedia.org/wiki/Median_raphe_nucleus] +synonym: "nucleus raphes medianus" EXACT LATIN [FMA:72465, FMA:TA] +synonym: "superior central nucleus" EXACT [FMA:72465] +synonym: "superior central nucleus raphe" EXACT [FMA:72465] +synonym: "superior central tegmental nucleus" EXACT [FMA:72465] +xref: BAMS:MnR +xref: BIRNLEX:889 +xref: BM:MR +xref: DHBA:12235 +xref: EMAPA:35551 +xref: FMA:72465 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1391 +xref: http://en.wikipedia.org/wiki/Median_raphe_nucleus +xref: MBA:679 +is_a: UBERON:0007415 ! nucleus of midbrain reticular formation +relationship: part_of UBERON:0004684 {source="Wikipedia"} ! raphe nuclei + +[Term] +id: UBERON:0003005 +name: dorsal longitudinal fasciculus of midbrain +def: "Part of dorsal longitudinal fasciculus located in the midbrain tegmentum" [BIRNLEX:893] +synonym: "bundle of Schutz of midbrain" EXACT [OBOL:automatic] +synonym: "DLFMB" BROAD ABBREVIATION [BIRNLEX:893, NIFSTD:NeuroNames_abbrevSource] +synonym: "dorsal longitudinal fasciculus of the midbrain" RELATED [NeuroNames:525] +synonym: "fasciculus longitudinalis dorsalis (mesencephali)" RELATED LATIN [NeuroNames:525] +synonym: "fasciculus of Schutz of midbrain" EXACT [OBOL:automatic] +synonym: "midbrain bundle of Schutz" EXACT [OBOL:automatic] +synonym: "midbrain dorsal longitudinal fasciculus" EXACT [OBOL:automatic] +synonym: "midbrain fasciculus of Schutz" EXACT [OBOL:automatic] +synonym: "midbrain posterior longitudinal fasciculus" EXACT [OBOL:automatic] +synonym: "posterior longitudinal fasciculus of midbrain" EXACT [OBOL:automatic] +xref: BAMS:dlfmb +xref: BIRNLEX:893 +xref: FMA:72453 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=525 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=525 {source="BIRNLEX:893"} +xref: http://linkedlifedata.com/resource/umls/id/C0262222 +xref: UMLS:C0262222 {source="BIRNLEX:893"} +is_a: UBERON:0005838 {source="FMA"} ! fasciculus of brain +relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum +relationship: part_of UBERON:0003045 {source="NIFSTD"} ! dorsal longitudinal fasciculus + +[Term] +id: UBERON:0003006 +name: dorsal nucleus of lateral lemniscus +synonym: "dorsal nucleus of the lateral lemniscus" EXACT [FMA:72483] +synonym: "nucleus lemnisci lateralis dorsalis" RELATED LATIN [NeuroNames:591] +synonym: "nucleus lemnisci lateralis pars dorsalis" RELATED LATIN [NeuroNames:591] +synonym: "nucleus of the lateral lemniscus dorsal part" RELATED [BAMS:NLLd] +synonym: "nucleus of the lateral lemniscus, dorsal part" EXACT [ABA:NLLd] +synonym: "nucleus posterior lemnisci lateralis" EXACT LATIN [FMA:72483, FMA:TA] +synonym: "posterior nucleus of lateral lemniscus" EXACT [FMA:72483] +xref: BAMS:DLL +xref: BAMS:NLLd +xref: BIRNLEX:894 +xref: BM:LLD +xref: DHBA:12455 +xref: DMBA:16860 +xref: FMA:72483 +xref: HBA:9139 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=591 {source="BIRNLEX:894"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=591 +xref: http://linkedlifedata.com/resource/umls/id/C0175443 +xref: MBA:82 +xref: UMLS:C0175443 {source="BIRNLEX:894"} +is_a: UBERON:0006840 ! nucleus of lateral lemniscus + +[Term] +id: UBERON:0003007 +name: lateral parabrachial nucleus +def: "The lateral parabrachial nucleus induces thirst by stimulating the median preoptic nucleus. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted]." [http://en.wikipedia.org/wiki/Lateral_parabrachial_nucleus] +subset: uberon_slim +synonym: "nucleus parabrachialis lateralis" RELATED LATIN [NeuroNames:588] +synonym: "parabrachial nucleus, lateral division" RELATED [NeuroNames:588] +xref: BAMS:LPB +xref: BIRNLEX:897 +xref: DHBA:12482 +xref: DMBA:16852 +xref: FMA:72481 +xref: HBA:9145 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=588 {source="BIRNLEX:897"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=588 +xref: http://en.wikipedia.org/wiki/Lateral_parabrachial_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0175445 +xref: MBA:881 +xref: UMLS:C0175445 {source="BIRNLEX:897"} +is_a: UBERON:0007634 ! parabrachial nucleus +relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum + +[Term] +id: UBERON:0003008 +name: dorsal longitudinal fasciculus of hypothalamus +def: "Part of dorsal longitudinal fasciculus located within the hypothalamus" [BIRNLEX:898] +synonym: "DLFH" BROAD ABBREVIATION [BIRNLEX:898, NIFSTD:NeuroNames_abbrevSource] +synonym: "dorsal longitudinal fasciculus of the hypothalamus" RELATED [NeuroNames:432] +synonym: "fasciculus longitudinalis dorsalis (hypothalami)" RELATED LATIN [NeuroNames:432] +xref: BAMS:dlfh +xref: BIRNLEX:898 +xref: FMA:62063 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=432 {source="BIRNLEX:898"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=432 +xref: http://linkedlifedata.com/resource/umls/id/C0262221 +xref: UMLS:C0262221 {source="BIRNLEX:898"} +is_a: UBERON:0005838 ! fasciculus of brain +relationship: part_of UBERON:0002430 {source="FMA"} ! lateral hypothalamic area +relationship: part_of UBERON:0003045 {source="NIFSTD"} ! dorsal longitudinal fasciculus + +[Term] +id: UBERON:0003009 +name: dorsal tegmental decussation +synonym: "chiasma fibrorum proprium tecti" RELATED LATIN [NeuroNames:523] +synonym: "decussatio dorsalis tegmenti" RELATED LATIN [NeuroNames:523] +synonym: "decussatio fibrorum medialium tecti" RELATED LATIN [NeuroNames:523] +synonym: "decussatio tegmentalis dorsalis (Meynert)" RELATED LATIN [NeuroNames:523] +synonym: "decussatio tegmentalis posterior" EXACT LATIN [FMA:72451, FMA:TA] +synonym: "decussationes tegmentales" RELATED LATIN [NeuroNames:523] +synonym: "decussationes tegmenti" RELATED LATIN [NeuroNames:523] +synonym: "dorsal fountain decussation" EXACT [FMA:72451] +synonym: "dorsal tegmental decussation (Meynert)" RELATED [NeuroNames:523] +synonym: "DTGX" BROAD ABBREVIATION [BIRNLEX:901, NIFSTD:NeuroNames_abbrevSource] +synonym: "fountain decussation of Meynert" EXACT [] +synonym: "Meynert's decussation" EXACT [FMA:72451] +synonym: "posterior tegmental decussation" EXACT [FMA:72451] +xref: BAMS:dtd +xref: BAMS:dtgx +xref: BIRNLEX:901 +xref: DHBA:12340 +xref: FMA:72451 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=523 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=523 {source="BIRNLEX:901"} +xref: http://linkedlifedata.com/resource/umls/id/C0152370 +xref: http://www.snomedbrowser.com/Codes/Details/369248009 +xref: UMLS:C0152370 {source="BIRNLEX:901"} +is_a: UBERON:0007418 {source="FMA"} ! neural decussation +relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum + +[Term] +id: UBERON:0003010 +name: lateral pes lemniscus +synonym: "deep pes lemniscus" EXACT [FMA:72459] +synonym: "fasciculi laterales pontis" RELATED LATIN [NeuroNames:531] +synonym: "fussschleife" EXACT LATIN [FMA:72459, FMA:TA] +synonym: "lateral pontine bundle" EXACT [FMA:72459] +synonym: "laterale haubenfussschleife" EXACT [] +synonym: "laterale pontine buendel" EXACT [] +synonym: "LPL" BROAD ABBREVIATION [BIRNLEX:902, NIFSTD:NeuroNames_abbrevSource] +synonym: "pes lemnisci profundus" RELATED LATIN [NeuroNames:531] +synonym: "pes lemniscus lateralis" RELATED LATIN [NeuroNames:531] +synonym: "pes lemniscus profond" EXACT LATIN [FMA:72459, FMA:TA] +xref: BAMS:lpl +xref: BIRNLEX:902 +xref: FMA:72459 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=531 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=531 {source="BIRNLEX:902"} +xref: http://linkedlifedata.com/resource/umls/id/C0175409 +xref: UMLS:C0175409 {source="BIRNLEX:902"} +is_a: UBERON:0003001 {source="FMA"} ! nervous system lemniscus +relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum + +[Term] +id: UBERON:0003011 +name: facial motor nucleus +def: "Nucleus located in the pontine tegmentum containing motor neurons that innervate the muscles of the face. Some neurons that project to the cerebellum have also been identified in some species." [BIRNLEX:903] +comment: see comments for facial nucleus. also check ZFA/pons +subset: uberon_slim +subset: vertebrate_core +synonym: "branchiomotor nucleus of facial nerve" EXACT [FMA:54582] +synonym: "facial motor nucleus" EXACT [FMA:54582] +synonym: "facial nerve motor nucleus" EXACT [ZFA:0000206] +synonym: "facial nucleus" RELATED [http://en.wikipedia.org/wiki/Facial_nucleus] +synonym: "motor nucleus of facial nerve" EXACT [FMA:54582] +synonym: "motor nucleus of VII" EXACT [FMA:54582] +synonym: "motor nucleus VII" EXACT [ZFA:0000206] +synonym: "n. nervi facialis" RELATED LATIN [http://en.wikipedia.org/wiki/Facial_motor_nucleus] +synonym: "nucleus facialis" RELATED LATIN [NeuroNames:586] +synonym: "nucleus motorius nervi facialis" EXACT [ZFA:0000206] +synonym: "nucleus nervi facialis" RELATED LATIN [NeuroNames:586] +synonym: "nVII" EXACT [ZFA:0000206] +xref: BAMS:7 +xref: BAMS:VII +xref: BIRNLEX:903 +xref: DMBA:17317 +xref: FMA:54582 +xref: HBA:9142 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=586 {source="BIRNLEX:903"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=586 +xref: http://en.wikipedia.org/wiki/Facial_motor_nucleus +xref: http://linkedlifedata.com/resource/umls/id/C0175442 +xref: MBA:661 +xref: TAO:0000206 +xref: UMLS:C0175442 {source="BIRNLEX:903"} +xref: ZFA:0000206 +is_a: UBERON:0000127 ! facial nucleus + +[Term] +id: UBERON:0003012 +name: flocculonodular lobe +def: "The flocculonodular lobe is a lobe of the cerebellum consisting of the nodule and the flocculus. It is closely associated with the vestibulocerebellum. [WP,unvetted]." [http://en.wikipedia.org/wiki/Flocculonodular_lobe] +subset: pheno_slim +subset: uberon_slim +synonym: "cerebellum flocculonodular lobe" EXACT [MA:0002965] +synonym: "flocculonodular lobe" EXACT [FMA:72253] +synonym: "flocculonodular lobe of cerebellum" EXACT [FMA:72253] +synonym: "lobus flocculonodularis" EXACT LATIN [FMA:72253, FMA:TA] +synonym: "posterior lobe-2 of cerebellum" EXACT [FMA:72253] +xref: BAMS:FNL +xref: BIRNLEX:904 +xref: DHBA:12852 +xref: EV:0100297 +xref: Flocculonodular:lobe +xref: FMA:72253 +xref: HBA:12944 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=679 +xref: http://www.snomedbrowser.com/Codes/Details/279361008 +xref: MA:0002965 +is_a: UBERON:0005293 ! cerebellum lobe +relationship: contributes_to_morphology_of UBERON:0002129 ! cerebellar cortex +relationship: part_of UBERON:0014642 {source="Wikipedia"} ! vestibulocerebellum + +[Term] +id: UBERON:0003013 +name: alar central lobule +def: "The lobulus centralis is a small square lobule, situated in the anterior cerebellar notch. It overlaps the lingula, from which it is separated by the precentral fissure; laterally, it extends along the upper and anterior part of each hemisphere, where it forms a wing-like prolongation, the alar central lobule. [WP,unvetted]." [http://en.wikipedia.org/wiki/Alar_central_lobule] +subset: uberon_slim +synonym: "ala centralis" EXACT LATIN [FMA:72517, FMA:TA] +synonym: "ala lobuli centralis" RELATED LATIN [http://en.wikipedia.org/wiki/Alar_central_lobule] +synonym: "alae of central lobule" EXACT [FMA:72517] +synonym: "lobule II and III of hemisphere of cerebellum" RELATED [FMA:72517] +synonym: "lobules II, III of vermis" EXACT [FMA:72517] +xref: BAMS:ACL +xref: BIRNLEX:907 +xref: FMA:72517 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=655 +xref: http://en.wikipedia.org/wiki/Alar_central_lobule +is_a: UBERON:0004003 {source="FMA"} ! cerebellum hemisphere lobule + +[Term] +id: UBERON:0003015 +name: anterior quadrangular lobule +synonym: "anterior crescentic lobule of cerebellum" EXACT [FMA:72516] +synonym: "anterior quadrangular lobule of cerebellum" EXACT [FMA:72516] +synonym: "anterior quadrangular lobule of cerebellum [H IV et V]" EXACT [FMA:72516] +synonym: "anterior semilunar lobule" EXACT [FMA:72516] +synonym: "lobulus quadrangularis (pars rostralis)" EXACT LATIN [FMA:72516, FMA:TA] +synonym: "lobulus quadrangularis anterior cerebelli [h iv et v]" EXACT LATIN [FMA:72516, FMA:TA] +synonym: "semilunar lobule-1 (anterior)" EXACT [FMA:72516] +xref: BAMS:AQL +xref: BIRNLEX:913 +xref: FMA:72516 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=654 +xref: http://www.snomedbrowser.com/Codes/Details/369041006 +is_a: UBERON:0004003 ! cerebellum hemisphere lobule +disjoint_from: UBERON:0005350 {source="lexical"} ! lobule simplex + +[Term] +id: UBERON:0003016 +name: postcommissural fornix of brain +def: "The posterior fibers of the fornix, which continue through the hypothalamus to the mammillary bodies; then to the anterior nuclei of thalamus, which project to the cingulate cortex." [http://en.wikipedia.org/wiki/Fornix_(neuroanatomy)#Structure, https://github.com/obophenotype/uberon/issues/1277] +synonym: "columna posterior fornicis" RELATED LATIN [NeuroNames:431] +synonym: "fornix (entering Corpus mamillare)" EXACT LATIN [FMA:62062, FMA:TA] +synonym: "fornix postcommissuralis" RELATED LATIN [NeuroNames:431] +synonym: "POFX" BROAD ABBREVIATION [BIRNLEX:914, NIFSTD:NeuroNames_abbrevSource] +synonym: "postcommissural fornix" EXACT [FMA:62062] +xref: BAMS:fxpo +xref: BAMS:pofx +xref: BIRNLEX:914 +xref: FMA:62062 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=431 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=431 {source="BIRNLEX:914"} +xref: http://linkedlifedata.com/resource/umls/id/C0175340 +xref: MBA:737 +xref: UMLS:C0175340 {source="BIRNLEX:914"} +is_a: UBERON:0011591 ! tract of diencephalon +relationship: part_of UBERON:0000052 ! fornix of brain +relationship: part_of UBERON:0002430 ! lateral hypothalamic area + +[Term] +id: UBERON:0003017 +name: substantia innominata +def: "A predominantly gray matter structure of the basal telencephalon defined on the basis of Nissl stain. Caudal to the anterior commissure it lies deep to the globus pallidus and dorsal to the amygdala. Rostral to the anterior commissure it lies deep to the striatum. The more rostral portion contains the basal forebrain nucleus ( Anthoney-1994 ). In the late twentieth century the region containing the substantia innominata was resegmented on the basis of neurochemistry and connectivity to constitute the striatopallidal system ( Heimer-1995 ). In this scheme the caudal portion of substantia innominata is located largely in the ventral pallidum and the rostral portion in the ventral striatum. (from Brain Info)" [BIRNLEX:915] +subset: uberon_slim +synonym: "innominate substance" EXACT [FMA:61885] +synonym: "nucleus of substantia innominata" EXACT [FMA:61885] +synonym: "substantia innominata (Reil, Reichert)" RELATED [NeuroNames:274] +synonym: "substantia innominata of Meynert" RELATED LATIN [NeuroNames:274] +synonym: "substantia innominata of Reichert" RELATED [BTO:0002447] +synonym: "substantia innominata of Reil" RELATED [BTO:0002447] +synonym: "substriatal gray" RELATED [NeuroNames:274] +xref: BAMS:SI +xref: BIRNLEX:915 +xref: BM:Tel-SI +xref: BTO:0002447 +xref: DHBA:13034 +xref: FMA:61885 +xref: GAID:638 +xref: HBA:13003 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=274 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=274 {source="BIRNLEX:915"} +xref: http://linkedlifedata.com/resource/umls/id/C0038589 +xref: MBA:342 +xref: MESH:A08.186.211.577.820 +xref: Substantia:innominata +xref: UMLS:C0038589 {source="BIRNLEX:915"} +is_a: UBERON:0009663 ! telencephalic nucleus +disjoint_from: UBERON:0010010 {source="NIFSTD"} ! basal nucleus of telencephalon +relationship: part_of UBERON:0002778 {source="ABA"} ! ventral pallidum + +[Term] +id: UBERON:0003018 +name: parvicellular part of ventral posteromedial nucleus +synonym: "gustatory nucleus (thalamus)" EXACT [BIRNLEX:917] +synonym: "gustatory thalamic nucleus" EXACT [FMA:62207] +synonym: "nucleus ventralis posterior medialis thalami, pars parvicellularis" EXACT [BIRNLEX:917] +synonym: "nucleus ventralis posterior medialis, pars parvocellularis" RELATED LATIN [NeuroNames:349] +synonym: "pars parvicellularis nuclei ventralis posteromedialis thalami" EXACT LATIN [FMA:62207, FMA:TA] +synonym: "parvicellular part of the ventral posteromedial nucleus" RELATED [NeuroNames:349] +synonym: "parvicellular part of ventral posteromedial nucleus of thalamus" EXACT [FMA:62207] +synonym: "thalamic gustatory area" RELATED [NeuroNames:349] +synonym: "thalamic gustatory relay" RELATED [NeuroNames:349] +synonym: "thalamic taste relay" RELATED [NeuroNames:349] +synonym: "ventral posteromedial nucleus of thalamus, parvicellular part" EXACT [FMA:62207] +synonym: "ventral posteromedial nucleus of the thalamus parvicellular part" RELATED [NeuroNames:349] +synonym: "ventral posteromedial nucleus of the thalamus, parvicellular part" RELATED [BAMS:VPMpc] +synonym: "ventral posteromedial nucleus, parvocellular part" EXACT [FMA:62207] +synonym: "ventral posteromedial thalamic nucleus, parvicellular part" EXACT [FMA:62207] +synonym: "ventroposterior medial thalamic nucleus, parvocellular part" RELATED [BAMS:VPMPC] +synonym: "ventroposteromedial nucleus of the thalamus parvicellular part" RELATED [BAMS:VPMpc] +synonym: "ventroposteromedial nucleus of the thalamus, parvicellular part" EXACT [BIRNLEX:917] +synonym: "VPMPC" BROAD ABBREVIATION [BIRNLEX:917, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:Gus +xref: BAMS:VPMPC +xref: BAMS:VPMpc +xref: BIRNLEX:917 +xref: DHBA:146034766 +xref: FMA:62207 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=349 {source="BIRNLEX:917"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=349 +xref: http://linkedlifedata.com/resource/umls/id/C0175290 +xref: MBA:741 +xref: UMLS:C0175290 {source="BIRNLEX:917"} +is_a: UBERON:0019269 ! gray matter of diencephalon +relationship: part_of UBERON:0002945 {source="NIFSTD"} ! ventral posteromedial nucleus of thalamus + +[Term] +id: UBERON:0003019 +name: oral part of ventral posterolateral nucleus +synonym: "nucleus lateralis intermedius lateralis" EXACT [BIRNLEX:918] +synonym: "nucleus posteroventralis oralis" EXACT [BIRNLEX:918] +synonym: "nucleus ventralis intermedius (dewulf)" EXACT [BIRNLEX:918] +synonym: "nucleus ventralis intermedius (walker)" EXACT [BIRNLEX:918] +synonym: "nucleus ventralis intermedius thalami" EXACT [BIRNLEX:918] +synonym: "nucleus ventralis posterior lateralis, pars oralis" EXACT [BIRNLEX:918] +synonym: "nucleus ventrointermedius" EXACT [BIRNLEX:918] +synonym: "oral part of the ventral posterolateral nucleus" RELATED [NeuroNames:345] +synonym: "ventral part of ventral lateral posterior nucleus (jones)" EXACT [] +synonym: "ventral posterolateral nucleus, oral part" EXACT [FMA:62205] +synonym: "ventral posterolateral thalamic nucleus, oral part" EXACT [FMA:62205] +synonym: "ventrointermedius nucleus" RELATED [BAMS:VIM] +synonym: "VPLO" BROAD ABBREVIATION [BIRNLEX:918, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:VIM +xref: BAMS:VPLO +xref: BIRNLEX:918 +xref: FMA:62205 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=345 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=345 {source="BIRNLEX:918"} +xref: http://linkedlifedata.com/resource/umls/id/C0175286 +xref: UMLS:C0175286 {source="BIRNLEX:918"} +is_a: UBERON:0019269 ! gray matter of diencephalon +relationship: part_of UBERON:0002942 {source="NIFSTD"} ! ventral posterolateral nucleus + +[Term] +id: UBERON:0003020 +name: subcallosal area +def: "The subcallosal area (parolfactory area of Broca, area parolfactoria) is a small triangular field on the medial surface of the hemisphere in front of the subcallosal gyrus, from which it is separated by the posterior parolfactory sulcus; it is continuous below with the olfactory trigone, and above and in front with the cingulate gyrus; it is limited anteriorly by the anterior parolfactory sulcus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Subcallosal_area] +subset: uberon_slim +synonym: "adolfactory area" EXACT [FMA:61890] +synonym: "area paraolfactoria" EXACT LATIN [FMA:61890, FMA:TA] +synonym: "area parolfactoria" RELATED LATIN [http://en.wikipedia.org/wiki/Subcallosal_area] +synonym: "area subcallosa" RELATED LATIN [http://en.wikipedia.org/wiki/Subcallosal_area] +synonym: "paraolfactory area" EXACT [FMA:61890] +synonym: "parolfactory area" EXACT [FMA:61890] +synonym: "Zuckerkandl's gyrus" RELATED [NeuroNames:278] +xref: BAMS:SCA +xref: BIRNLEX:919 +xref: FMA:61890 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=278 {source="BIRNLEX:919"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=278 +xref: http://linkedlifedata.com/resource/umls/id/C0228282 +xref: http://www.snomedbrowser.com/Codes/Details/362357004 +xref: Subcallosal:area +xref: UMLS:C0228282 {source="BIRNLEX:919"} +is_a: UBERON:0011300 ! gray matter of telencephalon +disjoint_from: UBERON:0010010 {source="NIFSTD"} ! basal nucleus of telencephalon + +[Term] +id: UBERON:0003021 +name: central lobule +def: "The central lobule is a small square lobule, situated in the anterior cerebellar notch. It overlaps the lingula, from which it is separated by the precentral fissure; laterally, it extends along the upper and anterior part of each hemisphere, where it forms a wing-like prolongation, the ala lobuli centralis. [WP,unvetted]." [http://en.wikipedia.org/wiki/Central_lobule] +subset: uberon_slim +synonym: "central lobe of the cerebellum" RELATED [BAMS:CENT] +synonym: "central lobule of cerebellum" EXACT [FMA:72519] +synonym: "central lobule of cerebellum [II and III]" EXACT [FMA:72519] +synonym: "lobule II and III of vermis" RELATED [FMA:72519] +synonym: "lobulus centralis" RELATED LATIN [http://en.wikipedia.org/wiki/Central_lobule] +synonym: "lobulus centralis cerebelli [ii et iii]" EXACT LATIN [FMA:72519, FMA:TA] +xref: BAMS:CENT +xref: BAMS:CLb +xref: BIRNLEX:920 +xref: Central:lobule +xref: FMA:72519 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=658 +xref: http://www.snomedbrowser.com/Codes/Details/279383007 +xref: MBA:920 +is_a: UBERON:0004070 ! cerebellum vermis lobule +relationship: part_of UBERON:0003941 {source="FMA"} ! cerebellum anterior vermis + +[Term] +id: UBERON:0003022 +name: obsolete lobe parts of cerebral cortex +is_obsolete: true +consider: FMA:68603 + +[Term] +id: UBERON:0003023 +name: pontine tegmentum +def: "Dorsal portion of the pons, containing cranial nervee nuclei, ascending and descending tracts and reticular nuclei. It is continuous with the reticular formation of the medulla (Carpenter, A Core Text of Neuroanatomy, 3rd ed, 1985, pg 133)." [BIRNLEX:923] +subset: uberon_slim +synonym: "dorsal pons" EXACT [] +synonym: "dorsal portion of pons" EXACT [FMA:71108] +synonym: "pars dorsalis pontis" RELATED LATIN [NeuroNames:557] +synonym: "pars posterior pontis" RELATED LATIN [NeuroNames:557] +synonym: "tegmental portion of pons" EXACT [FMA:71108] +synonym: "tegmentum of pons" EXACT [FMA:71108] +synonym: "tegmentum pontis" EXACT LATIN [FMA:71108, FMA:TA] +synonym: "tegmentum pontis" RELATED LATIN [http://en.wikipedia.org/wiki/Pontine_tegmentum] +xref: BAMS:PTg +xref: BIRNLEX:923 +xref: DHBA:12416 +xref: FMA:71108 +xref: HBA:9135 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=557 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=557 {source="BIRNLEX:923"} +xref: http://linkedlifedata.com/resource/umls/id/C0228426 +xref: http://www.snomedbrowser.com/Codes/Details/362401009 +xref: Pontine:tegmentum +xref: UMLS:C0228426 {source="BIRNLEX:923"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: has_part UBERON:0002047 ! pontine raphe nucleus +relationship: has_part UBERON:0002128 ! superior olivary complex +relationship: has_part UBERON:0002148 ! locus ceruleus +relationship: has_part UBERON:0002149 ! superior salivatory nucleus +relationship: part_of UBERON:0000988 ! pons + +[Term] +id: UBERON:0003024 +name: principal part of ventral posteromedial nucleus +synonym: "nucleus ventralis posteromedialis, pars principalis" RELATED LATIN [NeuroNames:348] +synonym: "nucleus ventralis posteromedialis, pars prinicipalis" EXACT [BIRNLEX:927] +synonym: "principal part of the ventral posteromedial nucleus" RELATED [NeuroNames:348] +synonym: "ventral posteromedial nucleus, principal part" RELATED [NeuroNames:348] +synonym: "VPMPr" BROAD ABBREVIATION [BIRNLEX:927, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:VPMPr +xref: BIRNLEX:927 +xref: FMA:62208 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=348 {source="BIRNLEX:927"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=348 +xref: http://linkedlifedata.com/resource/umls/id/C0175289 +xref: UMLS:C0175289 {source="BIRNLEX:927"} +is_a: UBERON:0019269 ! gray matter of diencephalon +relationship: part_of UBERON:0002945 {source="NIFSTD"} ! ventral posteromedial nucleus of thalamus + +[Term] +id: UBERON:0003025 +name: brachium of inferior colliculus +def: "The Brachium of inferior colliculus (or inferior brachium) carries auditory afferent fibers from the inferior colliculus of the mesencephalon to the medial geniculate nucleus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Brachium_of_inferior_colliculus] +subset: uberon_slim +synonym: "brachium colliculi caudalis" RELATED LATIN [NeuroNames:480] +synonym: "brachium colliculi inferioris" RELATED LATIN [http://en.wikipedia.org/wiki/Brachium_of_inferior_colliculus] +synonym: "brachium of medial geniculate" EXACT [FMA:71114] +synonym: "brachium of the inferior colliculus" RELATED [NeuroNames:480] +synonym: "brachium quadrigeminum inferius" RELATED LATIN [NeuroNames:480] +synonym: "inferior brachium" EXACT [FMA:71114] +synonym: "inferior collicular brachium" EXACT [FMA:71114] +synonym: "inferior colliculus brachium" EXACT [FMA:71114] +synonym: "inferior quadrigeminal brachium" EXACT [FMA:71114] +synonym: "nucleus of the brachium of the inferior colliculus" RELATED [BAMS:BIC] +synonym: "peduncle of inferior colliculus" EXACT [FMA:71114] +xref: BAMS:BIC +xref: BAMS:bic +xref: BIRNLEX:929 +xref: BM:MB-BSC +xref: DHBA:12327 +xref: DMBA:17753 +xref: FMA:71114 +xref: HBA:265505386 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=480 {source="BIRNLEX:929"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=480 +xref: http://en.wikipedia.org/wiki/Brachium_of_inferior_colliculus +xref: http://linkedlifedata.com/resource/umls/id/C0175372 +xref: MBA:482 +xref: UMLS:C0175372 {source="BIRNLEX:929"} +is_a: UBERON:0000122 ! neuron projection bundle +is_a: UBERON:0011215 ! central nervous system cell part cluster +relationship: part_of UBERON:0001946 ! inferior colliculus +relationship: part_of UBERON:0002316 ! white matter + +[Term] +id: UBERON:0003026 +name: limitans nucleus +synonym: "Lim" BROAD ABBREVIATION [BIRNLEX:931, NIFSTD:NeuroNames_abbrevSource] +synonym: "limitans thalamic nucleus" EXACT [BIRNLEX:931] +synonym: "nucleus limitans" EXACT [BIRNLEX:931] +synonym: "nucleus limitans opticus (Hassler)" EXACT [BIRNLEX:931] +synonym: "nucleus limitans thalami" EXACT [BIRNLEX:931] +xref: BAMS:Lim +xref: BIRNLEX:931 +xref: BM:Die-Th-L +xref: DHBA:13043 +xref: FMA:62220 +xref: HBA:4429 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=361 {source="BIRNLEX:931"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=361 +xref: http://linkedlifedata.com/resource/umls/id/C0175299 +xref: http://www.snomedbrowser.com/Codes/Details/369181002 +xref: UMLS:C0175299 {source="BIRNLEX:931"} +is_a: UBERON:0002308 ! nucleus of brain + +[Term] +id: UBERON:0003027 +name: cingulate cortex +def: "The cingulate cortex is a part of the brain situated in the medial aspect of the cortex. It is extended from the corpus callosum below to the cingulate sulcus above, at least anteriorly. [WP,unvetted]." [http://en.wikipedia.org/wiki/Cingulate_cortex] +subset: efo_slim +subset: uberon_slim +synonym: "cingulate neocortex" EXACT [DHBA:10277] +synonym: "gyrus cingulatus" RELATED LATIN [http://en.wikipedia.org/wiki/Cingulate_cortex] +synonym: "gyrus cinguli" RELATED PLURAL [] +xref: BIRNLEX:934 +xref: BM:Tel-Cx-Cg +xref: BTO:0003975 +xref: Cingulate:cortex +xref: DHBA:10277 +xref: DMBA:16072 +xref: EFO:0000343 +xref: EMAPA:35242 +xref: http://linkedlifedata.com/resource/umls/id/C0598179 +xref: MA:0000904 +xref: NCIT:C52713 +xref: UMLS:C0598179 {source="ncithesaurus:Cingulate_Cortex"} +xref: UMLS:C0598179 {source="BIRNLEX:934"} +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0016542 {source="NIFSTD", source="cjm"} ! limbic cortex + +[Term] +id: UBERON:0003028 +name: commissure of inferior colliculus +def: "A commissure that is part of a inferior colliculus [Automatically generated definition]." [OBOL:automatic] +synonym: "caudal colliculus commissure" EXACT [OBOL:automatic] +synonym: "commissura colliculi inferioris" RELATED LATIN [NeuroNames:481] +synonym: "commissura colliculorum caudalium" RELATED LATIN [NeuroNames:481] +synonym: "commissura colliculorum inferiorum" RELATED LATIN [NeuroNames:481] +synonym: "commissure of caudal colliculus" EXACT [OBOL:automatic] +synonym: "commissure of inferior colliculi" EXACT [FMA:71115] +synonym: "commissure of posterior colliculus" EXACT [OBOL:automatic] +synonym: "commissure of posterior corpus quadrigeminum" EXACT [OBOL:automatic] +synonym: "commissure of the inferior colliculi" RELATED [BAMS:ICG] +synonym: "commissure of the inferior colliculi" RELATED [BAMS:IGO] +synonym: "commissure of the inferior colliculi" RELATED [BAMS:cic] +synonym: "commissure of the inferior colliculus" RELATED [NeuroNames:481] +synonym: "inferior collicular commissure" EXACT [FMA:71115] +synonym: "inferior colliculus commissure" EXACT [FMA:71115] +synonym: "posterior colliculus commissure" EXACT [OBOL:automatic] +synonym: "posterior corpus quadrigeminum commissure" EXACT [OBOL:automatic] +xref: BAMS:cic +xref: BAMS:ICG +xref: BAMS:IGO +xref: BIRNLEX:935 +xref: DHBA:12333 +xref: FMA:71115 +xref: HBA:265505434 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=481 {source="BIRNLEX:935"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=481 +xref: http://linkedlifedata.com/resource/umls/id/C0152367 +xref: http://www.snomedbrowser.com/Codes/Details/369260005 +xref: MBA:633 +xref: UMLS:C0152367 {source="BIRNLEX:935"} +is_a: UBERON:0005970 ! brain commissure +intersection_of: UBERON:0001020 ! nervous system commissure +intersection_of: part_of UBERON:0001946 ! inferior colliculus +relationship: part_of UBERON:0001946 ! inferior colliculus + +[Term] +id: UBERON:0003029 +name: stria terminalis +def: "White matter structure in the brain consisting of fibers running along the lateral margin of the ventricular surface of the thalamus. The stria terminalis covers the thalamostriate vein, marking a line of separation between the thalamus and the caudate nucleus as seen upon gross dissection of the ventricles of the brain, viewed from the superior aspect. The stria terminalis extends from the region of the interventricular foramen to the temporal horn of the lateral ventricle, carrying fibers from the amygdala to the septal, hypothalamic, and thalamic areas of the brain. It also carries fibers projecting from these areas back to the amygdala. (Wikipedia:Stria_terminalis)" [BIRNLEX:937] +subset: uberon_slim +synonym: "fibrae striae terminalis" RELATED LATIN [NeuroNames:286] +synonym: "fovilles fasciculus" RELATED [BTO:0004616] +synonym: "semicircular stria" EXACT [FMA:61974] +synonym: "stria semicircularis" RELATED LATIN [NeuroNames:286] +synonym: "stria terminalis" RELATED LATIN [http://en.wikipedia.org/wiki/Stria_terminalis] +synonym: "stria terminalis (Wenzel-Wenzel)" RELATED [NeuroNames:286] +synonym: "Tarins tenia" RELATED [BTO:0004616] +synonym: "tenia semicircularis" RELATED [BTO:0004616] +synonym: "terminal stria" EXACT [http://en.wikipedia.org/wiki/Terminal_stria] +xref: BAMS:st +xref: BAMS:STR +xref: BIRNLEX:937 +xref: BM:ST +xref: BM:STr +xref: BTO:0004616 +xref: DHBA:10591 +xref: FMA:61974 +xref: HBA:9278 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=286 {source="BIRNLEX:937"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=286 +xref: http://linkedlifedata.com/resource/umls/id/C0175243 +xref: MBA:301 +xref: Stria:terminalis +xref: UMLS:C0175243 {source="BIRNLEX:937"} +is_a: UBERON:0002437 ! cerebral hemisphere white matter +is_a: UBERON:0016555 ! stria of telencephalon + +[Term] +id: UBERON:0003030 +name: posterior nucleus of thalamus +subset: vertebrate_core +synonym: "caudal thalamic nucleus" RELATED [TAO:0000325] +synonym: "nucleus posterior thalami" EXACT [BIRNLEX:939] +synonym: "nucleus thalami posterior" EXACT LATIN [FMA:62221, FMA:TA] +synonym: "posterior nucleus of the thalamus" RELATED [NeuroNames:362] +synonym: "PTh" BROAD ABBREVIATION [BIRNLEX:939, NIFSTD:NeuroNames_abbrevSource] +xref: BAMS:PTh +xref: BIRNLEX:939 +xref: BM:Die-Th-Po +xref: DHBA:10440 +xref: FMA:62221 +xref: HBA:4431 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=362 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=362 {source="BIRNLEX:939"} +xref: http://linkedlifedata.com/resource/umls/id/C0262315 +xref: http://www.snomedbrowser.com/Codes/Details/424901000 +xref: NCIT:C33370 +xref: TAO:0000325 +xref: UMLS:C0262315 {source="ncithesaurus:Posterior_Nucleus_of_the_Thalamus"} +xref: UMLS:C0262315 {source="BIRNLEX:939"} +xref: ZFA:0000325 +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +intersection_of: UBERON:0002308 ! nucleus of brain +intersection_of: part_of UBERON:0002709 ! posterior nuclear complex of thalamus +relationship: part_of UBERON:0002709 {source="FMA", source="NIFSTD"} ! posterior nuclear complex of thalamus + +[Term] +id: UBERON:0003031 +name: submedial nucleus of thalamus +def: "Thalamic nucleus separated from the ventromedial part of the mediodorsal nucleus of the thalamus by the internal medullary lamina (Paxinos The rat nervous system 2nd ed, Academic Press, 1995)." [BIRNLEX:946] +synonym: "gelatinosus thalamic nucleus" EXACT [FMA:62223] +synonym: "nucleus submedialis thalami" EXACT LATIN [FMA:62223, FMA:TA] +synonym: "nucleus submedius thalami" EXACT [BIRNLEX:946] +synonym: "SM" BROAD ABBREVIATION [BIRNLEX:946, NIFSTD:NeuroNames_abbrevSource] +synonym: "submedial nucleus" EXACT [FMA:62223] +synonym: "submedial nucleus of thalamus" EXACT [FMA:62223] +synonym: "submedial nucleus of the thalamus" RELATED [NeuroNames:364] +synonym: "submedial nucleus thalamus" EXACT [BIRNLEX:946] +synonym: "submedial thalamic nucleus" EXACT [BIRNLEX:946] +synonym: "submedius thalamic nucleus" RELATED [NeuroNames:364] +xref: BAMS:SMT +xref: BIRNLEX:946 +xref: DMBA:16426 +xref: EV:0100203 +xref: FMA:62223 +xref: HBA:4406 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=364 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=364 {source="BIRNLEX:946"} +xref: http://linkedlifedata.com/resource/umls/id/C0175301 +xref: http://www.snomedbrowser.com/Codes/Details/279151007 +xref: MBA:366 +xref: UMLS:C0175301 {source="BIRNLEX:946"} +is_a: UBERON:0003030 ! posterior nucleus of thalamus + +[Term] +id: UBERON:0003033 +name: suprageniculate nucleus of thalamus +synonym: "nucleus suprageniculatus" EXACT [BIRNLEX:953] +synonym: "SG" BROAD ABBREVIATION [BIRNLEX:953, NIFSTD:NeuroNames_abbrevSource] +synonym: "suprageniculate nucleus" EXACT [FMA:62222] +synonym: "suprageniculate thalamic nucleus" EXACT [FMA:62222] +xref: BAMS:SGN +xref: BAMS:SPGN +xref: BIRNLEX:953 +xref: BM:Die-Th-SG +xref: DHBA:13044 +xref: DMBA:16452 +xref: FMA:62222 +xref: HBA:4430 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=363 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=363 {source="BIRNLEX:953"} +xref: http://linkedlifedata.com/resource/umls/id/C0152346 +xref: http://www.snomedbrowser.com/Codes/Details/369180001 +xref: MBA:325 +xref: UMLS:C0152346 {source="BIRNLEX:953"} +is_a: UBERON:0002308 ! nucleus of brain + +[Term] +id: UBERON:0003034 +name: central dorsal nucleus of thalamus +synonym: "CD" BROAD ABBREVIATION [BIRNLEX:956, NIFSTD:NeuroNames_abbrevSource] +synonym: "central dorsal nucleus" EXACT [FMA:62169, http://uri.neuinfo.org/nif/nifstd/birnlex] +synonym: "central dorsal nucleus of thalamus" EXACT [DHBA:13331] +synonym: "circular nucleus" BROAD [NeuroNames:1853] +synonym: "nucleus centralis dorsalis thalami" EXACT [BIRNLEX:956] +synonym: "nucleus centralis superior lateralis" EXACT [BIRNLEX:956] +synonym: "nucleus centralis superior lateralis thalami" EXACT [BIRNLEX:956] +synonym: "nucleus circularis" RELATED INCONSISTENT [BIRNLEX:956] +xref: BAMS:CD +xref: BIRNLEX:956 +xref: DHBA:13331 +xref: EMAPA:35210 +xref: FMA:62169 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=319 {source="BIRNLEX:956"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=319 +xref: http://linkedlifedata.com/resource/umls/id/C0752053 +xref: UMLS:C0752053 {source="BIRNLEX:956"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0002965 {source="FMA", source="NIFSTD"} ! rostral intralaminar nuclear group + +[Term] +id: UBERON:0003035 +name: obsolete regional part of cerebellar white matter +synonym: "segment of cerebellar white matter" EXACT [BIRNLEX:959] +is_obsolete: true +consider: BIRNLEX:959 +consider: FMA:72547 + +[Term] +id: UBERON:0003036 +name: central lateral nucleus +synonym: "central lateral nucleus of thalamus" EXACT [FMA:62170] +synonym: "central lateral nucleus of the thalamus" RELATED [NeuroNames:320] +synonym: "central lateral thalamic nucleus" EXACT [FMA:62170] +synonym: "centrolateral thalamic nucleus" EXACT [FMA:62170] +synonym: "CL" BROAD ABBREVIATION [BIRNLEX:961, NIFSTD:NeuroNames_abbrevSource] +synonym: "nucleus centralis lateralis of thalamus" EXACT [BIRNLEX:961] +synonym: "nucleus centralis lateralis thalami" EXACT [BIRNLEX:961] +xref: BAMS:CL +xref: BAMS:CLN +xref: BIRNLEX:961 +xref: BM:Die-CL +xref: DHBA:10444 +xref: DMBA:16418 +xref: EMAPA:35205 +xref: EV:0100205 +xref: FMA:62170 +xref: HBA:4434 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=320 {source="BIRNLEX:961"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=320 +xref: http://linkedlifedata.com/resource/umls/id/C0228355 +xref: http://www.snomedbrowser.com/Codes/Details/279153005 +xref: MBA:575 +xref: UMLS:C0228355 {source="BIRNLEX:961"} +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0002965 {source="NIFSTD"} ! rostral intralaminar nuclear group + +[Term] +id: UBERON:0003037 +name: septum +def: "A wall, dividing a cavity or structure into smaller ones[WP]." [http://en.wikipedia.org/wiki/Septum] +comment: general anatomical term in FMA +subset: pheno_slim +synonym: "septa" EXACT PLURAL [] +xref: AAO:0011127 +xref: FMA:86461 +xref: http://en.wikipedia.org/wiki/Septum +xref: OpenCyc:Mx4rrqot_on_EdaAAAACs0uFOQ +is_a: UBERON:0000061 ! anatomical structure +relationship: located_in UBERON:0002553 ! anatomical cavity + +[Term] +id: UBERON:0003038 +name: thoracic spinal cord +def: "The thoracic nerves are the spinal nerves emerging from the thoracic vertebrae. [WP,unvetted]." [http://en.wikipedia.org/wiki/Thoracic_spinal_cord] +subset: uberon_slim +synonym: "pars thoracica medullae spinalis" EXACT LATIN [FMA:71167, FMA:TA] +synonym: "segmenta thoracica medullae spinalis [1-12]" EXACT LATIN [FMA:71167, FMA:TA] +synonym: "thoracic region of spinal cord" EXACT [FMA:71167] +synonym: "thoracic segment of spinal cord" EXACT [FMA:71167] +synonym: "thoracic segments of spinal cord [1-12]" EXACT [FMA:71167] +synonym: "thoracic spinal cord" EXACT [FMA:71167] +xref: BIRNLEX:966 +xref: FMA:71167 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1718 +xref: http://en.wikipedia.org/wiki/Thoracic_spinal_cord +xref: http://linkedlifedata.com/resource/umls/id/C0581620 +xref: http://www.snomedbrowser.com/Codes/Details/278750009 +xref: MA:0003082 +xref: NCIT:C12894 +xref: UMLS:C0581620 {source="ncithesaurus:Thoracic_Spinal_Cord"} +xref: UMLS:C0581620 {source="BIRNLEX:966"} +is_a: UBERON:0005844 ! spinal cord segment +intersection_of: UBERON:0005844 ! spinal cord segment +intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk +relationship: part_of UBERON:0008231 ! dorsal thoracic segment of trunk + +[Term] +id: UBERON:0003039 +name: anterior commissure anterior part +def: "The horseshoe-shaped tract that connects the two olfactory bulbs." [MP:0010859] +subset: pheno_slim +synonym: "anterior commissure olfactory limb" RELATED [BAMS:aco] +synonym: "anterior commissure pars anterior" EXACT [MP:0010859] +synonym: "anterior commissure, anterior part" EXACT [FMA:61963] +synonym: "anterior commissure, olfactory limb" RELATED [BAMS:aco] +synonym: "anterior part of anterior commissure" EXACT [MP:0008230] +synonym: "anterior part of anterior commissure" EXACT [FMA:61963] +synonym: "commissura anterior, crus anterius" EXACT LATIN [FMA:61963, FMA:TA] +synonym: "commissura anterior, pars anterior" EXACT LATIN [FMA:61963, FMA:TA] +synonym: "commissura anterior, pars olfactoria" EXACT LATIN [FMA:61963, FMA:TA] +synonym: "commissura rostralis, pars anterior" EXACT LATIN [FMA:61963, FMA:TA] +synonym: "olfactory limb of anterior commissure" EXACT [FMA:61963] +synonym: "olfactory part of anterior commissure" EXACT [FMA:61963] +synonym: "pars anterior" BROAD [MP:0008230] +synonym: "pars anterior commissurae anterioris" EXACT [MP:0008230] +synonym: "pars olfactoria commissurae anterioris" EXACT LATIN [FMA:61963, FMA:TA] +xref: BAMS:aca +xref: BAMS:aco +xref: BIRNLEX:969 +xref: EMAPA:37404 {source="MA:th"} +xref: FMA:61963 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=206 +xref: MBA:900 +is_a: UBERON:0019294 ! commissure of telencephalon +intersection_of: UBERON:0001020 ! nervous system commissure +intersection_of: connects UBERON:0002264 ! olfactory bulb +intersection_of: part_of UBERON:0000935 ! anterior commissure +disjoint_from: UBERON:0003043 {source="lexical"} ! posterior part of anterior commissure +disjoint_from: UBERON:0006964 ! pars distalis of adenohypophysis +relationship: connects UBERON:0002264 ! olfactory bulb +relationship: contributes_to_morphology_of UBERON:0000935 ! anterior commissure +relationship: part_of UBERON:0000935 ! anterior commissure + +[Term] +id: UBERON:0003040 +name: central gray substance of midbrain +def: "Periaqueductal gray (PAG; also called the 'central gray') is the gray matter located around the cerebral aqueduct within the midbrain. It plays a role in the descending modulation of pain and in defensive behaviour. The ascending pain and temperature fibers of the spinothalamic tract also send information to the PAG via the spinomesencephalic tract. The spinomesencephalic tract is so-named because the fibers originate in the spine and terminate in the mesencephalon, another name for the midbrain, the part of the brain in which the PAG resides. [WP,unvetted]." [http://en.wikipedia.org/wiki/Periaqueductal_gray, http://sourceforge.net/p/obo/mouse-anatomy-requests/40/] +subset: efo_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "anulus aquaeductus" RELATED LATIN [NeuroNames:510] +synonym: "anulus aqueductus cerebri" RELATED LATIN [NeuroNames:510] +synonym: "anulus of cerebral aqueduct" EXACT [FMA:74510] +synonym: "central (periaqueductal) gray" EXACT [FMA:74510] +synonym: "central gray" RELATED [BAMS:PAG] +synonym: "central gray of the midbrain" RELATED [NeuroNames:510] +synonym: "central gray substance of the midbrain" RELATED [NeuroNames:510] +synonym: "central grey" RELATED [MA:0000209] +synonym: "central grey substance of midbrain" RELATED [NeuroNames:510] +synonym: "CGMB" BROAD ABBREVIATION [BIRNLEX:973, NIFSTD:NeuroNames_abbrevSource] +synonym: "griseum centrale" BROAD [BIRNLEX:973] +synonym: "griseum centrale mesencephali" RELATED LATIN [NeuroNames:510] +synonym: "griseum periventriculare mesencephali" RELATED LATIN [NeuroNames:510] +synonym: "midbrain periaqueductal grey" EXACT [MA:0000209] +synonym: "pAG" RELATED [NeuroNames:510] +synonym: "periaquectuctal grey" RELATED DUBIOUS [https://sourceforge.net/tracker/?func=detail&aid=3209233&group_id=76834&atid=1205376, MA:0002895] +synonym: "periaqueductal gray" EXACT [FMA:74510] +synonym: "periaqueductal gray matter" EXACT [FMA:74510] +synonym: "periaqueductal gray of tegmentum" EXACT [FMA:74510] +synonym: "periaqueductal gray, proper" RELATED [BAMS:PAG] +synonym: "periaqueductal grey" EXACT [MA:0002895] +synonym: "periaqueductal grey matter" EXACT [EV:0100249] +synonym: "periaqueductal grey substance" EXACT [FMA:74510] +synonym: "s. grisea centralis" RELATED LATIN [http://en.wikipedia.org/wiki/Periaqueductal_gray] +synonym: "substantia grisea centralis" BROAD [BIRNLEX:973] +synonym: "substantia grisea centralis mesencephali" RELATED LATIN [NeuroNames:510] +xref: BAMS:CGMB +xref: BAMS:PAG +xref: BIRNLEX:973 +xref: BM:MB-PAG +xref: BTO:0002701 +xref: DHBA:12209 +xref: EFO:0002470 +xref: EMAPA:32781 +xref: EV:0100249 +xref: FMA:74510 +xref: GAID:585 +xref: HBA:9003 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=510 {source="BIRNLEX:973"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=510 +xref: http://linkedlifedata.com/resource/umls/id/C0228398 +xref: http://www.snomedbrowser.com/Codes/Details/369233003 +xref: MA:0000209 +xref: MA:0002895 +xref: MBA:795 +xref: MESH:A08.186.211.132.659.822.595 +xref: Periaqueductal:gray +xref: TAO:0000518 +xref: UMLS:C0228398 {source="BIRNLEX:973"} +xref: ZFA:0000518 +is_a: UBERON:0019267 ! gray matter of midbrain +is_a: UBERON:0035011 ! central gray substance +intersection_of: UBERON:0035011 ! central gray substance +intersection_of: part_of UBERON:0001891 ! midbrain +relationship: part_of UBERON:0001943 {source="NIFSTD"} ! midbrain tegmentum + +[Term] +id: UBERON:0003041 +name: trigeminal nerve fibers +def: "A nerve fiber that is part of a trigeminal nerve." [OBOL:automatic] +synonym: "central part of trigeminal nerve" EXACT [FMA:72501] +synonym: "fibrae nervi trigemini" RELATED LATIN [NeuroNames:607] +synonym: "trigeminal nerve fibers" EXACT [FMA:72501] +synonym: "trigeminal nerve tract" EXACT [FMA:72501] +xref: BAMS:5nf +xref: BIRNLEX:974 +xref: FMA:72501 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=607 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=607 {source="BIRNLEX:974"} +xref: http://linkedlifedata.com/resource/umls/id/C0175452 +xref: UMLS:C0175452 {source="BIRNLEX:974"} +is_a: UBERON:0006134 ! nerve fiber +intersection_of: UBERON:0006134 ! nerve fiber +intersection_of: part_of UBERON:0001645 ! trigeminal nerve +relationship: part_of UBERON:0001645 ! trigeminal nerve + +[Term] +id: UBERON:0003043 +name: posterior part of anterior commissure +def: "The major forebrain commissure that connects the two temporal lobes of the cortex." [MP:0010860] +subset: pheno_slim +synonym: "anterior commissure pars posterior" EXACT [MP:0010860] +synonym: "anterior commissure temporal limb" EXACT [MP:0008230] +synonym: "anterior commissure, posterior part" EXACT [FMA:61964] +synonym: "anterior commissure, temporal limb" RELATED [BAMS:act] +synonym: "commissura anterior, crus posterius" EXACT LATIN [FMA:61964, FMA:TA] +synonym: "commissura anterior, pars posterior" EXACT LATIN [FMA:61964, FMA:TA] +synonym: "commissura rostralis, pars posterior" EXACT LATIN [FMA:61964, FMA:TA] +synonym: "pars posterior" BROAD [MP:0008229] +synonym: "pars posterior commissurae anterioris" EXACT LATIN [FMA:61964, FMA:TA] +synonym: "temporal limb of anterior commissure" EXACT [FMA:61964] +xref: BAMS:acp +xref: BAMS:act +xref: BIRNLEX:977 +xref: EMAPA:37410 {source="MA:th"} +xref: FMA:61964 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=207 +xref: http://linkedlifedata.com/resource/umls/id/C0175210 +xref: MBA:908 +xref: UMLS:C0175210 {source="BIRNLEX:977"} +is_a: UBERON:0019294 ! commissure of telencephalon +intersection_of: UBERON:0001020 ! nervous system commissure +intersection_of: connects UBERON:0001871 ! temporal lobe +intersection_of: part_of UBERON:0000935 ! anterior commissure +disjoint_from: UBERON:0003217 ! neural lobe of neurohypophysis +relationship: connects UBERON:0002808 ! left temporal lobe +relationship: connects UBERON:0002809 ! right temporal lobe +relationship: contributes_to_morphology_of UBERON:0000935 ! anterior commissure +relationship: part_of UBERON:0000935 ! anterior commissure + +[Term] +id: UBERON:0003044 +name: uncinate fasciculus +def: "Pathway arising from the fastigial nucleus to the vestibular nuclei, reticular formation, motor neurons of brainstem and cervical spinal cord (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 2nd ed., 2005, pg 261)." [BIRNLEX:983] +subset: uberon_slim +synonym: "cerebellospinal tract" RELATED [NeuroNames:597] +synonym: "cerebral uncinate fasciculus" EXACT [FMA:77636] +synonym: "fasciculus fastigio-vestibularis" RELATED LATIN [NeuroNames:597] +synonym: "fastigiobulbar tract" RELATED [NeuroNames:597] +synonym: "hook bundle of Russell" RELATED [NeuroNames:597] +synonym: "russell's fasciculus" RELATED LATIN [NeuroNames:597] +synonym: "tractus cerebello-bulbaris" RELATED LATIN [NeuroNames:597] +synonym: "tractus uncinatus" RELATED LATIN [NeuroNames:597] +synonym: "tractus uncinatus (Lewandowsky)" RELATED LATIN [NeuroNames:597] +synonym: "uncinate bundle of Russell" RELATED [NeuroNames:597] +synonym: "uncinate fascicle (Russell)" RELATED [NeuroNames:597] +synonym: "uncinate fasciculus of cerebellum" RELATED [NeuroNames:597] +synonym: "uncinate fasciculus of pons" RELATED [BAMS:unc] +synonym: "uncinate fasciculus of Russell" RELATED [NeuroNames:597] +synonym: "uncinate fasciculus of the pons" RELATED [NeuroNames:597] +synonym: "uncinate fasciculus-2" RELATED [NeuroNames:597] +xref: BAMS:unc +xref: BIRNLEX:983 +xref: DHBA:10594 +xref: FMA:77636 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=597 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=597 {source="BIRNLEX:983"} +xref: http://linkedlifedata.com/resource/umls/id/C0228271 +xref: http://www.snomedbrowser.com/Codes/Details/369083001 +xref: UMLS:C0228271 {source="BIRNLEX:983"} +xref: Uncinate:fasciculus +is_a: UBERON:0005838 {source="FMA"} ! fasciculus of brain +relationship: part_of UBERON:0003023 {source="NIFSTD"} ! pontine tegmentum + +[Term] +id: UBERON:0003045 +name: dorsal longitudinal fasciculus +def: "A fiber bundle containing fibers from nuclei of the hypothalamus that project to the dorsal tegmental nucleus and other regions of the midbrain and the pons, as well as fibers originating in the pontine reticular formation and the medullary reticular formation that project to the thalamus and other regions of the forebrain (Carpenter-83). In NeuroNames it is a composite structure consisting of the dorsal longitudinal fasciculus of hypothalamus, the dorsal longitudinal fasciculus of midbrain, the dorsal longitudinal fasciculus of pons and the dorsal longitudinal fasciculus of medulla. (NeuroNames)" [BIRNLEX:986] +subset: uberon_slim +subset: vertebrate_core +synonym: "accessory cochlear nucleus" RELATED [NeuroNames:722] +synonym: "bundle of Schutz" EXACT [FMA:83845] +synonym: "DLF" RELATED [ZFA:0005266] +synonym: "dorsal longitudinal fascicle" RELATED [BAMS:dlf] +synonym: "fasciculus longitudinalis dorsalis" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsal_longitudinal_fasciculus] +synonym: "fasciculus longitudinalis posterior" EXACT LATIN [FMA:83845, FMA:TA] +synonym: "fasciculus longitudinalis posterior" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsal_longitudinal_fasciculus] +synonym: "fasciculus of Schutz" EXACT [FMA:83845] +synonym: "nucleus acustici accessorici" RELATED LATIN [NeuroNames:722] +synonym: "nucleus cochlearis anterior" RELATED LATIN [NeuroNames:722] +synonym: "nucleus cochlearis ventralis" RELATED LATIN [NeuroNames:722] +synonym: "posterior longitudinal fasciculus" EXACT [FMA:83845] +synonym: "ventral cochlear nuclei" RELATED [NeuroNames:722] +synonym: "ventral division of cochlear nucleus" RELATED [NeuroNames:722] +xref: BAMS:dlf +xref: BAMS:VCo +xref: BIRNLEX:986 +xref: DHBA:12035 +xref: FMA:83845 +xref: HBA:9348 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=722 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=722 {source="BIRNLEX:986"} +xref: http://en.wikipedia.org/wiki/Dorsal_longitudinal_fasciculus +xref: MBA:547 +xref: ZFA:0005266 +is_a: UBERON:0005838 ! fasciculus of brain + +[Term] +id: UBERON:0003046 +name: ventral acoustic stria +def: "White matter structure containing fibers arising from neurons in the cochlear nuclear complex" [BIRNLEX:991] +synonym: "anterior acoustic stria" EXACT [FMA:72498] +synonym: "stria cochlearis anterior" EXACT LATIN [FMA:72498, FMA:TA] +synonym: "striae acusticae ventralis" RELATED LATIN [NeuroNames:604] +xref: BAMS:vas +xref: BIRNLEX:991 +xref: FMA:72498 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=604 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=604 {source="BIRNLEX:991"} +xref: http://linkedlifedata.com/resource/umls/id/C0175456 +xref: UMLS:C0175456 {source="BIRNLEX:991"} +is_a: UBERON:0013199 {source="FMA"} ! stria of neuraxis +is_a: UBERON:0019293 ! white matter of pontine tegmentum + +[Term] +id: UBERON:0003047 +name: obsolete regional part of pretectal region +def: "A regional part of brain that is part of a pretectal region [Automatically generated definition]." [OBOL:automatic] +subset: non_informative +synonym: "pretectal region segment" EXACT [FMA:74519] +synonym: "segment of pretectal region" EXACT [BIRNLEX:993] +is_obsolete: true +consider: BIRNLEX:993 +consider: FMA:74519 + +[Term] +id: UBERON:0003048 +name: obsolete regional part of hypothalamus +def: "A regional part of brain that is part of a hypothalamus [Automatically generated definition]." [OBOL:automatic] +subset: non_informative +synonym: "hypothalamus segment" EXACT [FMA:67706] +synonym: "segment of hypothalamus" EXACT [BIRNLEX:995] +is_obsolete: true +consider: BIRNLEX:995 +consider: FMA:67706 +consider: SCTID:360454003 + +[Term] +id: UBERON:0003049 +name: collagen and cuticulin-based cuticle +alt_id: UBERON:WBbt_0005755 +def: "A type of cuticle composed of highly cross-linked collagens and specialised insoluble proteins known as cuticlins, together with glycoproteins and lipids[WP]." [https://orcid.org/0000-0002-6601-2165, WA:dh] +subset: uberon_slim +synonym: "nematode cuticle" RELATED [] +xref: WBbt:0005755 +is_a: UBERON:0001002 ! cuticle + +[Term] +id: UBERON:0003050 +name: olfactory placode +def: "A thick plate of cells derived from the neural ectoderm in the head region of the embryo that develops into the olfactory region of the nasal cavity." [http://en.wikipedia.org/wiki/Nasal_placode, XAO:0000005] +comment: Olfactory placodes are the only ectodermal placodes to produce glia, a cell type typically derived from neural crest // Note that NBK53171 classifies this as non-neurogenic +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "nasal I placode" RELATED [] +synonym: "nasal placode" RELATED [] +synonym: "olfactory placodes" EXACT PLURAL [] +synonym: "placoda nasalis" EXACT LATIN [] +synonym: "placoda olfactoria" EXACT LATIN [] +xref: AAO:0011076 +xref: EFO:0003420 +xref: EHDAA2:0001232 +xref: EHDAA:1504 +xref: EMAPA:16543 +xref: FMA:293971 +xref: Nasal:placode +xref: TAO:0000048 +xref: VHOG:0000186 +xref: XAO:0000005 +xref: ZFA:0000048 +is_a: UBERON:0009955 {contradicted_by="NCBIBook:NBK53171", source="ZFA"} ! neurogenic placode +relationship: develops_from UBERON:0002346 ! neurectoderm +relationship: part_of UBERON:0000076 {source="EHDAA2"} ! external ectoderm + +[Term] +id: UBERON:0003051 +name: ear vesicle +alt_id: UBERON:0004373 +def: "An epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [http://en.wikipedia.org/wiki/Otic_vesicle, MP:0009806] +subset: pheno_slim +subset: vertebrate_core +synonym: "acoustic vesicle" RELATED [VHOG:0001148] +synonym: "auditory vesicle" RELATED [BTO:0002661] +synonym: "otic vesicle" EXACT [MP:0004311] +synonym: "otocyst" RELATED [MP:0004311] +synonym: "OV" RELATED [] +xref: AAO:0011080 +xref: BTO:0002661 +xref: EHDAA2:0001342 +xref: EMAPA:16669 +xref: FMA:302920 +xref: http://linkedlifedata.com/resource/umls/id/C1518678 +xref: http://www.snomedbrowser.com/Codes/Details/308792006 +xref: NCIT:C34240 +xref: Otic:vesicle +xref: TAO:0000051 +xref: UMLS:C1518678 {source="ncithesaurus:Otic_Vesicle"} +xref: VHOG:0001148 +xref: XAO:0000006 +xref: ZFA:0000051 +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0006598 ! presumptive structure +is_a: UBERON:0007499 ! epithelial sac +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0007499 ! epithelial sac +intersection_of: has_potential_to_develop_into UBERON:0001846 ! internal ear +intersection_of: part_of UBERON:0000924 ! ectoderm +relationship: develops_from UBERON:0006273 ! otic pit +relationship: has_potential_to_develop_into UBERON:0001846 ! internal ear +relationship: part_of UBERON:0000924 ! ectoderm + +[Term] +id: UBERON:0003052 +name: midbrain-hindbrain boundary +def: "The part of the brain that is the morphological boundary between the midbrain and hindbrain and that is the location of an organizing center which patterns the midbrain and hindbrain primordia of the neural plate." [GO:0021555] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "isthmic organizer territory" RELATED [XAO:0000016] +synonym: "isthmo-cerebellar region" RELATED [VHOG:0000649] +synonym: "isthmus" RELATED [] +synonym: "isthmus/MHB" RELATED [Geisha:syn, NCBITaxon:8782] +synonym: "MHB" EXACT [] +synonym: "mid-hindbrain boundary" EXACT [] +synonym: "mid-hindbrain junction" EXACT [] +synonym: "midbrain hindbrain boundary" EXACT [] +xref: AAO:0011064 +xref: DMBA:16810 +xref: EHDAA2:0004395 +xref: EHDAA:5789 +xref: EMAPA:32857 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2076 +xref: NCIT:C93172 +xref: TAO:0000042 +xref: VHOG:0000649 +xref: XAO:0000016 +xref: ZFA:0000042 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0007651 {inconsistent_with="ZFA", source="https://sourceforge.net/p/obo/zebrafish-anatomy-zfa-term-requests/106/"} ! anatomical junction +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0009615 ! midbrain hindbrain boundary neural plate +relationship: immediate_transformation_of UBERON:0009615 {source="ZFA"} ! midbrain hindbrain boundary neural plate +relationship: part_of UBERON:0000955 {source="ZFA"} ! brain + +[Term] +id: UBERON:0003053 +name: ventricular zone +def: "Proliferative region that is part of the ventricular system." [ZFA:0001083] +subset: efo_slim +subset: vertebrate_core +synonym: "brain ventricular zone" EXACT [MA:0000819] +synonym: "ventricular zone of brain" EXACT [] +synonym: "ventricular zones" RELATED PLURAL [ZFA:0001083] +synonym: "VZ" EXACT [] +xref: AAO:0011112 +xref: BTO:0003654 +xref: DHBA:10542 +xref: EFO:0003624 +xref: EMAPA:32679 +xref: MA:0000819 +xref: PBA:294022030 +xref: TAO:0001083 +xref: VHOG:0001224 +xref: XAO:0000021 +xref: ZFA:0001083 +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0000955 {source="MA"} ! brain +relationship: part_of UBERON:0005281 {source="ZFA"} ! ventricular system of central nervous system + +[Term] +id: UBERON:0003054 +name: roof plate +alt_id: UBERON:0003298 +def: "A single row of glia at the dorsal midline of the developing neural tube along the entire anterior-posterior axis. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells." [GO:0021509, http://www.ncbi.nlm.nih.gov/pubmed/15378040] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "alar plate" RELATED [http://en.wikipedia.org/wiki/Roof_plate] +synonym: "future brain roof plate" RELATED [EMAPA:35361] +synonym: "roof plate neural tube" EXACT [VHOG:0000303] +synonym: "roof plate neural tube region" EXACT [ZFA:0001436] +synonym: "roofplate" EXACT [] +xref: AAO:0011097 +xref: EHDAA2:0001270 +xref: EHDAA:2891 +xref: EHDAA:916 +xref: EMAPA:16168 +xref: EMAPA:35361 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1371 +xref: TAO:0001436 +xref: TAO:0007058 +xref: VHOG:0000303 +xref: ZFA:0001436 +xref: ZFA:0007058 +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: in_dorsal_side_of UBERON:0001049 ! neural tube +relationship: part_of UBERON:0001049 ! neural tube + +[Term] +id: UBERON:0003055 +name: periderm +def: "A temporary epithelium that derives from the outer layer of the ectdoerm and is shed once the inner layer differentiates to form a true epidermis." [ISBN:9780878932504] +subset: pheno_slim +subset: uberon_slim +synonym: "epidermis epithelial layer" RELATED [] +synonym: "epidermis outer layer" RELATED [] +synonym: "epitrichium" RELATED [MP:0013530] +synonym: "EVL" RELATED [ZFA:0001185] +synonym: "periderm" RELATED [] +synonym: "skin periderm" EXACT [EHDAA2:0001846] +xref: EHDAA2:0001846 +xref: EHDAA:6538 +xref: FMA:295662 +xref: http://linkedlifedata.com/resource/umls/id/C1518973 +xref: NCIT:C34247 +xref: TAO:0001185 +xref: UMLS:C1518973 {source="ncithesaurus:Periderm"} +xref: VHOG:0001680 +xref: XAO:0000029 +xref: ZFA:0001185 +is_a: UBERON:0000487 {source="EHDAA2"} ! simple squamous epithelium +is_a: UBERON:0010371 ! ecto-epithelium +relationship: develops_from UBERON:0007383 {source="ZFA"} ! enveloping layer of ectoderm +relationship: part_of UBERON:0002199 {source="EHDAA2"} ! integument + +[Term] +id: UBERON:0003056 +name: pre-chordal neural plate +def: "The portion of neural plate anterior to the mid-hindbrain junction." [XB:curator] +synonym: "anterior neural plate" RELATED [] +xref: AAO:0011084 +xref: TAO:0007016 +xref: VHOG:0001200 +xref: XAO:0000045 +xref: ZFA:0007016 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: anterior_to UBERON:0009615 ! midbrain hindbrain boundary neural plate +relationship: part_of UBERON:0003075 ! neural plate + +[Term] +id: UBERON:0003057 +name: chordal neural plate +def: "The portion of neural plate posterior to the mid-hindbrain junction." [XB:curator] +synonym: "posterior neural plate" RELATED [] +xref: TAO:0007017 +xref: VHOG:0001201 +xref: XAO:0000046 +xref: ZFA:0007017 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0003075 ! neural plate +relationship: posterior_to UBERON:0009615 ! midbrain hindbrain boundary neural plate + +[Term] +id: UBERON:0003058 +name: hypochord +def: "The hypochord is a transient rod-like structure in the embryos of fish, lampreys and amphibians that is located immediately ventral to the notochord. The hypochord may play a role in positioning the dorsal aorta[GO]." [AAO:0000733, GO:0055016, http://www.ncbi.nlm.nih.gov/pubmed/10648245, ISBN:0815318960] +comment: Unlike in frogs and axolotl, the hypochord does not appear to be endodermally derived[ZFA]. near metamorphosis the hypochord fuses to the coccyx, thereby forming the urostyle[AAO] +subset: dubious_grouping +subset: efo_slim +synonym: "ipochord" EXACT [XAO:0000056] +synonym: "subnotochordal rod" EXACT [GO:0055016, http://www.ncbi.nlm.nih.gov/pubmed/10648245] +xref: AAO:0000733 +xref: EFO:0003475 +xref: TAO:0000031 +xref: VHOG:0000081 +xref: XAO:0000056 +xref: ZFA:0000031 +is_a: UBERON:0000479 ! tissue +relationship: develops_from UBERON:0006599 ! presumptive hypochord +relationship: immediate_transformation_of UBERON:0006599 {source="Bgee:AN"} ! presumptive hypochord + +[Term] +id: UBERON:0003059 +name: presomitic mesoderm +def: "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form." [ZFIN:curator] +subset: efo_slim +subset: pheno_slim +synonym: "presumptive somite mesoderm" RELATED [] +synonym: "PSM" RELATED [] +synonym: "segmental plate" EXACT [] +synonym: "somitogenic mesoderm" RELATED [] +synonym: "somitomeric mesoderm" RELATED [GO:0002075] +synonym: "unsegmented mesenchyme" RELATED [VHOG:0000559] +synonym: "unsegmented paraxial mesoderm" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: AAO:0011086 +xref: EFO:0001982 +xref: EMAPA:16189 +xref: EMAPA:16752 +xref: TAO:0000279 +xref: VHOG:0000559 +xref: XAO:0000057 +xref: ZFA:0000279 +is_a: UBERON:0006598 ! presumptive structure +intersection_of: UBERON:0005423 ! developing anatomical structure +intersection_of: has_potential_to_develop_into UBERON:0002329 ! somite +intersection_of: immediate_transformation_of UBERON:0007282 ! presumptive segmental plate +relationship: develops_from UBERON:0007282 ! presumptive segmental plate +relationship: has_potential_to_develop_into UBERON:0002329 ! somite +relationship: immediate_transformation_of UBERON:0007282 {source="Bgee:AN"} ! presumptive segmental plate +relationship: part_of UBERON:0003077 ! paraxial mesoderm + +[Term] +id: UBERON:0003060 +name: pronephric duct +def: "In mammals, the pronephric duct is the predecessor of the Wolffian duct[WP]." [http://en.wikipedia.org/wiki/Pronephric_duct] +comment: The pronephric duct collects the filtrate from the pronephric tubules and opens to the exterior of the pronephric kidney[GOC:mtg_kidney_jan10, PMID:15647339, XAO:0000063, ZFA:0000150] +subset: uberon_slim +synonym: "archinephric duct" RELATED [VHOG:0000082] +synonym: "ductus pronephricus" RELATED LATIN [http://en.wikipedia.org/wiki/Pronephric_duct] +synonym: "pronephric ducts" RELATED PLURAL [ZFA:0000150] +xref: AAO:0011088 +xref: http://linkedlifedata.com/resource/umls/id/C1283945 +xref: http://www.snomedbrowser.com/Codes/Details/361406002 +xref: NCIT:C34279 +xref: Pronephric:duct +xref: TAO:0000150 +xref: UMLS:C1283945 {source="ncithesaurus:Pronephric_Duct"} +xref: VHOG:0000082 +xref: XAO:0000063 +xref: ZFA:0000150 +is_a: UBERON:0009201 {source="GO"} ! nephric duct +is_a: UBERON:0012275 ! meso-epithelium +relationship: develops_from UBERON:0003064 {source="Wikipedia"} ! intermediate mesoderm +relationship: develops_from UBERON:0005721 {source="XAO"} ! pronephric mesoderm +relationship: part_of UBERON:0002120 ! pronephros + +[Term] +id: UBERON:0003061 +name: blood island +def: "Blood islands are structures in the developing embryo which lead to many different parts of the circulatory system. They primarily derive from plexuses formed from angioblasts. Within them, vacuoles appear through liquefaction of the central part of the syncytium into plasma. The lumen of the blood vessels thus formed is probably intracellular. The flattened cells at the periphery form the endothelium. The nucleated red blood corpuscles develop either from small masses of the original angioblast left attached to the inner wall of the lumen or directly from the flat endothelial cells. In either case the syncytial mass thus formed projects from and is attached to the wall of the vessel. Such a mass is known as a blood island and hemoglobin gradually accumulates within it. Later the cells on the surface round up, giving the mass a mulberry-like appearance. Then the red blood cells break loose and are carried away in the plasma. Such free blood cells continue to divide. Blood islands have been seen in the area vasculosa in the omphalomesenteric vein and arteries, and in the dorsal aorta[WP, unvetted]." [http://en.wikipedia.org/wiki/Blood_island_of_umbilical_vesicle] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "blood islands" EXACT PLURAL [] +synonym: "caudal hematopoietic tissue" RELATED [] +synonym: "posterior blood island" RELATED [] +synonym: "posterior ICM" RELATED [] +synonym: "VBI" RELATED [] +synonym: "ventral blood island" RELATED [] +synonym: "ventral lateral plate mesoderm" BROAD [] +xref: AAO:0011006 +xref: EFO:0003489 +xref: EHDAA:207 +xref: http://en.wikipedia.org/wiki/Blood_island_of_umbilical_vesicle +xref: http://linkedlifedata.com/resource/umls/id/C1511224 +xref: NCIT:C34113 +xref: TAO:0000094 +xref: TE:E5.11.2.0.0.0.4 +xref: UMLS:C1511224 {source="ncithesaurus:Blood_Island"} +xref: VHOG:0000085 +xref: XAO:0000067 +xref: ZFA:0000094 +is_a: UBERON:0006598 ! presumptive structure +relationship: develops_from UBERON:0003081 ! lateral plate mesoderm +relationship: has_potential_to_develop_into UBERON:0002390 ! hematopoietic system + +[Term] +id: UBERON:0003062 +name: primitive knot +alt_id: UBERON:0004018 +def: "organizer for gastrulation in vertebrates. The primitive knot starts as a regional knot of cells that forms on the blastodisc immediately anterior to where the outer layer of cells will begin to migrate inwards - an area known as the primitive streak. Posterior to the node is the primitive pit, where the cells of the epiblast (the upper layer of embryonic cells) initially begin to invaginate. This invagination expands posteriorly into the primitive groove as the cells layers continue to move into the space between the embryonic cells and the yolk. This differentiates the embryo into the germ layers - endoderm, mesoderm, and ectoderm. The primitive knot migrates posteriorly as gastrulation proceeds, eventually being absorbed into the tail bud.[WP]. the regional thickening of cells at the rostral tip of the vertebrate primitive streak through which gastrulating cells migrate anteriorally to form tissues in the future head and neck; this region organizes the formation of the three embryonic layers and establishes the longitudinal axis and the polarity of the embryo[MP]." [http://en.wikipedia.org/wiki/Primitive_knot, http://en.wikipedia.org/wiki/Regional_specification#Dorsal.2Fventral_axis_.26_organizer, MP:0004066] +subset: early_development +subset: pheno_slim +subset: uberon_slim +synonym: "DMZ" RELATED [VHOG:0000598] +synonym: "dorsal marginal zone" RELATED [XAO:0000072] +synonym: "embryo organizer" EXACT [GAID:1312] +synonym: "embryonic organizer" EXACT [GAID:1312] +synonym: "embryonic shield" EXACT [http://zfin.org/zf_info/zfbook/stages/gast.html] +synonym: "Hensen node" EXACT SENSU [GAID:1312, http://en.wikipedia.org/wiki/Primitive_knot] +synonym: "Hensen's node" EXACT SENSU [GAID:1312, http://en.wikipedia.org/wiki/Primitive_knot] +synonym: "Henson's node" RELATED [EMAPA:16075] +synonym: "node" BROAD [EMAPA:16075, ISBN:9780878932504] +synonym: "nodus primitivus" RELATED LATIN [http://en.wikipedia.org/wiki/Primitive_knot] +synonym: "organizer" EXACT [ZFA:0000071] +synonym: "primitive node" EXACT [http://en.wikipedia.org/wiki/Primitive_knot] +synonym: "shield" EXACT [ZFA:0000071] +synonym: "Spemann Mangold organizer" EXACT SENSU [ZFA:0000071] +synonym: "Spemann's organizer" EXACT SENSU [ZFA:0000071] +xref: AAO:0000346 +xref: BILA:0000053 +xref: BTO:0003395 +xref: Dorsal.2Fventral_axis_.26_organizer +xref: EHDAA2:0001272 +xref: EHDAA:549 +xref: EMAPA:16075 +xref: FMA:293116 +xref: GAID:1312 +xref: http://linkedlifedata.com/resource/umls/id/C1283999 +xref: http://www.snomedbrowser.com/Codes/Details/361464001 +xref: MESH:A16.254.650 +xref: NCIT:C34266 +xref: TAO:0000071 +xref: UMLS:C1283999 {source="ncithesaurus:Primitive_Node"} +xref: VHOG:0000598 +xref: XAO:0000072 +xref: ZFA:0000071 +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:0010188 {source="EHDAA2"} ! protuberance +relationship: contributes_to_morphology_of UBERON:0004341 ! primitive streak +relationship: develops_from UBERON:0007283 ! presumptive shield +relationship: immediate_transformation_of UBERON:0007283 {source="Bgee:AN"} ! presumptive shield +relationship: part_of UBERON:0002541 {source="ZFA"} ! germ ring +relationship: part_of UBERON:0004341 {source="EHDAA"} ! primitive streak + +[Term] +id: UBERON:0003063 +name: prechordal plate +alt_id: UBERON:0004881 +def: "A horseshoe-shaped thickening of the endoderm at the cranial (rostral) end of the primitive streak formed by the involution of Spemann's organizer cells which, together with the notochord, induces the formation of the neural plate from the overlying ectodermal cells and contributes mesodermal type cells to the surrounding tissue" [ISBN:0838580343, MP:0004387] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "head mesenchyme" BROAD [XAO:0000079] +synonym: "head mesoderm" BROAD [XAO:0000079] +xref: AAO:0011085 +xref: EHDAA2:0001493 +xref: EHDAA:181 +xref: FMA:295532 +xref: Prechordal:plate +xref: TAO:0000060 +xref: VHOG:0000086 +xref: XAO:0000079 +xref: ZFA:0000060 +is_a: UBERON:0002050 ! embryonic structure +relationship: develops_from UBERON:0034878 ! prechordal mesoderm +relationship: part_of UBERON:0003068 {source="ZFA"} ! axial mesoderm +relationship: transformation_of UBERON:0034878 {todo="PMID:16313393"} ! prechordal mesoderm + +[Term] +id: UBERON:0003064 +name: intermediate mesoderm +def: "The intermediate mesoderm is located between the lateral mesoderm and the paraxial mesoderm. It develops into the kidney and gonads." [GOC:curators, http://en.wikipedia.org/wiki/Intermediate_mesoderm] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "IM" RELATED [] +synonym: "intermediate mesenchyme" RELATED [https://github.com/obophenotype/uberon/wiki/The-neural-crest] +synonym: "intermediate plate" RELATED [EMAPA:16178] +synonym: "intermediate plate mesoderm" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "mesenchyma intermedium" RELATED LATIN [http://en.wikipedia.org/wiki/Intermediate_mesoderm] +xref: AAO:0010575 +xref: EMAPA:16056 +xref: EMAPA:16178 +xref: FMA:293147 +xref: http://linkedlifedata.com/resource/umls/id/C1284010 +xref: http://www.snomedbrowser.com/Codes/Details/361476001 +xref: Intermediate:mesoderm +xref: NCIT:C34193 +xref: TAO:0001206 +xref: UMLS:C1284010 {source="ncithesaurus:Intermediate_Mesoderm"} +xref: VHOG:0000087 +xref: XAO:0000085 +xref: ZFA:0001206 +is_a: UBERON:0002050 ! embryonic structure +relationship: adjacent_to UBERON:0003077 ! paraxial mesoderm +relationship: adjacent_to UBERON:0003081 ! lateral plate mesoderm +relationship: develops_from UBERON:0000926 {source="XAO"} ! mesoderm +relationship: part_of UBERON:0000926 {source="AAO"} ! mesoderm +relationship: part_of UBERON:0005256 {source="EMAPA"} ! trunk mesenchyme + +[Term] +id: UBERON:0003065 +name: ciliary marginal zone +def: "Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth.[Wehman et al, 2005]" [ZFIN:curator] +subset: efo_slim +subset: uberon_slim +synonym: "circumferential germinal zone" RELATED [] +synonym: "CMZ" RELATED [] +synonym: "peripheral growth zone" EXACT [ZFA:0001289] +synonym: "retinal ciliary marginal zone" EXACT [ZFA:0001289] +synonym: "retinal proliferative zone" RELATED [ZFA:0001289] +xref: AAO:0010342 +xref: EFO:0003668 +xref: TAO:0001289 +xref: VHOG:0000088 +xref: XAO:0000086 +xref: ZFA:0001289 +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0000966 ! retina + +[Term] +id: UBERON:0003066 +name: pharyngeal arch 2 +def: "The second pharyngeal arch will form the hyoid apparatus. The cranial neural crest cells that populate the second pharyngeal arch emerge primarily from rhombomere 4 and will form skeletal elements." [http://www.ncbi.nlm.nih.gov/pubmed/12784288, https://github.com/obophenotype/uberon/issues/258, ZFIN:yb] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "2nd arch" RELATED [EHDAA2:0000050] +synonym: "2nd pharyngeal arch" EXACT [] +synonym: "2nd visceral arch" RELATED [VHOG:0000297] +synonym: "arcus pharyngeus secundus" EXACT LATIN [http://en.wikipedia.org/wiki/Second_pharyngeal_arch] +synonym: "branchial arch 2" EXACT SENSU [] +synonym: "hyoid arch" EXACT [XAO:0000098] +synonym: "hyoid bars" RELATED [] +synonym: "pharyngeal arch 2" EXACT [] +synonym: "pharyngeal arches 2" RELATED [VHOG:0000297] +synonym: "second branchial arch" EXACT SENSU [] +synonym: "second pharyngeal arch" EXACT [] +synonym: "second visceral arch" EXACT SENSU [] +synonym: "visceral arch 2" EXACT SENSU [] +xref: AAO:0010363 +xref: EHDAA2:0000050 +xref: EHDAA:611 +xref: EMAPA:16272 +xref: FMA:293017 +xref: http://en.wikipedia.org/wiki/Second_pharyngeal_arch +xref: http://www.snomedbrowser.com/Codes/Details/308768003 +xref: NCIT:C34288 +xref: TAO:0001596 +xref: VHOG:0000297 +xref: XAO:0000098 +xref: ZFA:0001611 +is_a: UBERON:0002539 ! pharyngeal arch + +[Term] +id: UBERON:0003067 +name: dorsolateral placode +def: "Lateral neurogenic placodes positioned dorsal of the epibranchial placodes." [ZFIN:curator] +comment: The only remaining dorsolateral placode in land vertebrates is the otic/octaval placode +synonym: "dorsolateral placodes" EXACT PLURAL [ZFA:0001310] +xref: TAO:0001310 +xref: VHOG:0000103 +xref: XAO:0000187 +xref: ZFA:0001310 +is_a: UBERON:0009955 {source="NCBIBook:NBK53175"} ! neurogenic placode +relationship: dorsal_to UBERON:0003078 ! epibranchial placode + +[Term] +id: UBERON:0003068 +name: axial mesoderm +def: "The axial mesoderm includes the prechordal mesoderm and the chordamesoderm. It gives rise to the prechordal plate and to the notochord." [GO:0048318, http://en.wikipedia.org/wiki/Chordamesoderm] +subset: efo_slim +subset: uberon_slim +synonym: "chordamesoderm" RELATED [http://en.wikipedia.org/wiki/Chordamesoderm] +xref: AAO:0011017 +xref: EFO:0003647 +xref: http://en.wikipedia.org/wiki/Chordamesoderm +xref: TAO:0001204 +xref: VHOG:0000107 +xref: XAO:0000205 +xref: ZFA:0001204 +is_a: UBERON:0002050 ! embryonic structure +relationship: develops_from UBERON:0000926 ! mesoderm +relationship: part_of UBERON:0000926 ! mesoderm + +[Term] +id: UBERON:0003069 +name: otic placode +def: "A cranial placode which, once specified, invaginates to form an otic cup, which eventually separates from the surface ectoderm to form the otic vesicle or otocyst, a rounded structure without appar- ent polarity. As the otic placode invaginates into a cup neuroblasts delaminate from the anterior ventral aspect of the otic epithelium to give rise to neurons of the vestibulocochlear (statoacoustic) ganglion of cranial nerve VIII[NBK]" [http://en.wikipedia.org/wiki/Otic_placode, NCBIBook:NBK53175] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "auditory placode" RELATED [] +synonym: "ear placode" RELATED [] +synonym: "ear/otic placode" RELATED [] +synonym: "octaval placode" RELATED [ISBN:0471888893] +synonym: "octaval VIII placode" RELATED [ISBN:0471888893] +synonym: "placoda otica" EXACT LATIN [] +xref: AAO:0011079 +xref: EFO:0003429 +xref: EHDAA2:0001339 +xref: EHDAA:506 +xref: EMAPA:16195 +xref: FMA:293973 +xref: http://linkedlifedata.com/resource/umls/id/C1518677 +xref: NCIT:C34239 +xref: Otic:placode +xref: TAO:0000138 +xref: UMLS:C1518677 {source="ncithesaurus:Otic_Placodes"} +xref: VHOG:0000235 +xref: XAO:0000223 +xref: ZFA:0000138 +is_a: UBERON:0003067 {notes="invaginates", source="NCBIBook:NBK53175"} ! dorsolateral placode +relationship: part_of UBERON:0001690 ! ear + +[Term] +id: UBERON:0003070 +name: trigeminal placode complex +def: "A neurogenic placode that arises at the level of the midbrain-hindbrain boundary and develops into a trigeminal ganglion." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/22512454, https://github.com/obophenotype/uberon/issues/693] +subset: efo_slim +synonym: "profundus placode" RELATED INCONSISTENT [ISBN:0471888893] +synonym: "profundus V placode" RELATED INCONSISTENT [ISBN:0471888893] +synonym: "trigeminal placode" EXACT [EHDAA2:0004209, VHOG:0000109, XAO:0000225, ZFA:0000162] +synonym: "trigeminal placodes" RELATED PLURAL [ZFA:0000162] +synonym: "trigeminal V placode" EXACT [] +xref: EFO:0003433 +xref: EHDAA2:0004209 +xref: TAO:0000162 +xref: VHOG:0000109 +xref: XAO:0000225 +xref: ZFA:0000162 +is_a: UBERON:0003067 {source="ISBN:0471888893"} ! dorsolateral placode +property_value: dc-contributor https://github.com/ANiknejad +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +relationship: has_potential_to_developmentally_contribute_to UBERON:0003942 ! somatic sensory system + +[Term] +id: UBERON:0003071 +name: eye primordium +alt_id: UBERON:0005060 +def: "Portion of tissue that is part of the anterior neural keel and will form the optic vesicle[ZFA]. A paired ectodermal placode that becomes invaginated to form the embryonic lens vesicles." [GO:0046619, ZFA:0000570] +subset: efo_slim +synonym: "eye anlage" RELATED [XAO:0000227] +synonym: "eye field" RELATED [] +synonym: "eye placode" EXACT [OBOL:automatic] +synonym: "occular primordium" EXACT [] +synonym: "ocular primordium" EXACT [] +synonym: "optic field" RELATED [] +synonym: "optic placode" EXACT [GO:0046619] +synonym: "optic placode of camera-type eye" EXACT [GO:0046619, https://orcid.org/0000-0002-6601-2165] +synonym: "optic placodes" RELATED PLURAL [] +synonym: "optic primordium" EXACT [] +xref: AAO:0011038 +xref: EFO:0003541 +xref: EHDAA2:0004431 +xref: TAO:0000570 +xref: XAO:0000227 +xref: XAO:0004090 +xref: ZFA:0000570 +is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0001048 ! primordium +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0006598 ! presumptive structure +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0001048 ! primordium +intersection_of: has_potential_to_develop_into UBERON:0000019 ! camera-type eye +relationship: develops_from UBERON:0003056 ! pre-chordal neural plate +relationship: has_potential_to_develop_into UBERON:0000019 ! camera-type eye +relationship: part_of UBERON:0003056 {source="http://www.ncbi.nlm.nih.gov/pubmed/16496288", source="XAO"} ! pre-chordal neural plate + +[Term] +id: UBERON:0003072 +name: optic cup +def: "Multi-tissue structure that is comprised of neural and non-neural epithelial layers which will form the retina and retinal pigmented epithelium of the mature eye[ZFA]. double walled structured formed by expansion and invagination of the distal end of the optic vesicle that develops into the pigmented and sensory layers of the retina while the mouth of the optic cup eventually forms the pupil of the eye[MP]." [http://en.wikipedia.org/wiki/Optic_cup_(embryology), MP:0004269, ZFA:0001202] +subset: pheno_slim +subset: vertebrate_core +synonym: "eye cup" RELATED [] +synonym: "eyecup" RELATED [BTO:0005351] +synonym: "ocular cup" RELATED [VHOG:0000167] +synonym: "ophtalmic cup" RELATED [BTO:0005351] +xref: BTO:0005351 +xref: EHDAA2:0001303 +xref: EHDAA:2912 +xref: EMAPA:16674 +xref: http://linkedlifedata.com/resource/umls/id/C0231109 +xref: http://www.snomedbrowser.com/Codes/Details/308789007 +xref: NCIT:C34233 +xref: TAO:0001202 +xref: UMLS:C0231109 {source="ncithesaurus:Optic_Cup"} +xref: VHOG:0000167 +xref: ZFA:0001202 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: developmentally_induced_by UBERON:0003073 ! lens placode +relationship: develops_from UBERON:0004128 {source="ZFA"} ! optic vesicle +relationship: part_of UBERON:0010312 {source="ZFA"} ! immature eye + +[Term] +id: UBERON:0003073 +name: lens placode +def: "A thickened portion of ectoderm which serves as the precursor to the lens. SOX2 and Pou2f1 are involved in its development[WP]." [http://en.wikipedia.org/wiki/Lens_placode, ZFIN:curator] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "lens placodes" RELATED PLURAL [ZFA:0000122] +synonym: "placoda lentis" RELATED LATIN [http://en.wikipedia.org/wiki/Lens_placode] +xref: AAO:0011055 +xref: EFO:0003494 +xref: EHDAA2:0000982 +xref: EHDAA:2908 +xref: EMAPA:16672 +xref: FMA:296767 +xref: http://linkedlifedata.com/resource/umls/id/C1517770 +xref: Lens:placode +xref: NCIT:C34202 +xref: TAO:0000122 +xref: UMLS:C1517770 {source="ncithesaurus:Lens_Placodes"} +xref: VHOG:0000166 +xref: XAO:0000240 +xref: ZFA:0000122 +is_a: UBERON:0002546 ! cranial placode +is_a: UBERON:0006598 ! presumptive structure +is_a: UBERON:0010312 ! immature eye +is_a: UBERON:0011814 {source="NCBIBook:NBK53175"} ! non-neurogenic ectodermal placode +intersection_of: UBERON:0005085 ! ectodermal placode +intersection_of: has_potential_to_develop_into UBERON:0000965 ! lens of camera-type eye +relationship: developmentally_induced_by UBERON:0004128 ! optic vesicle +relationship: has_potential_to_develop_into UBERON:0000965 ! lens of camera-type eye + +[Term] +id: UBERON:0003074 +name: mesonephric duct +def: "Paired organ that connects the primitive kidney Wolffian body (or mesonephros) to the cloaca and serves as the anlage for certain male reproductive organs. the Wolffian duct is what remains of the pronephric duct after the atrophy of the pronephros[WP]. In Zebrafish: Duct of the adult kidney (mesonephros), present bilaterally ventral to the somites and leading to the cloacal chamber[ZFA]." [http://en.wikipedia.org/wiki/Mesonephric_duct, https://github.com/obophenotype/uberon/issues/28, ZFIN:curator] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "archinephric duct" RELATED [http://en.wikipedia.org/wiki/Wolffian_duct, VHOG:0000082] +synonym: "ductus mesonephricus; ductus Wolffi" RELATED LATIN [http://en.wikipedia.org/wiki/Mesonephric_duct] +synonym: "Leydig's duct" RELATED [http://en.wikipedia.org/wiki/Wolffian_duct] +synonym: "renal duct" RELATED [] +synonym: "Wolffian duct" EXACT [GOC:yaf, http://en.wikipedia.org/wiki/Wolffian_duct, ZFA:0000546] +xref: AAO:0000637 +xref: EHDAA2:0001243 +xref: EHDAA:1590 +xref: EMAPA:16577 +xref: GAID:1315 +xref: http://linkedlifedata.com/resource/umls/id/C0043204 +xref: http://www.snomedbrowser.com/Codes/Details/308800003 +xref: MESH:A16.254.940 +xref: Mesonephric:duct +xref: NCIT:C26469 +xref: TAO:0000546 +xref: UMLS:C0043204 {source="ncithesaurus:Mesonephric_Duct"} +xref: VHOG:0000082 +xref: XAO:0000242 +xref: ZFA:0000546 +is_a: UBERON:0000083 ! mesonephric tubule +is_a: UBERON:0009201 {source="GO"} ! nephric duct +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/rfoulger +relationship: develops_from UBERON:0003060 ! pronephric duct +relationship: develops_from UBERON:0005792 {source="EHDAA2"} ! nephric ridge + +[Term] +id: UBERON:0003075 +name: neural plate +def: "A region of embryonic ectodermal cells that lie directly above the notochord. During neurulation, they change shape and produce an infolding of the neural plate (the neural fold) that then seals to form the neural tube[XAO]. The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium[ZFA]" [http://en.wikipedia.org/wiki/Neural_plate, ISBN:0815318960, OMD:neural+plate, ZFIN:curator] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "lamina neuralis" RELATED LATIN [http://en.wikipedia.org/wiki/Neural_plate] +synonym: "presumptive central nervous system" RELATED [] +xref: AAO:0011072 +xref: BTO:0001765 +xref: DHBA:10153 +xref: DMBA:15565 +xref: EHDAA:346 +xref: EHDAA:902 +xref: EMAPA:35593 +xref: FMA:293879 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1362 +xref: http://linkedlifedata.com/resource/umls/id/C0920623 +xref: NCIT:C34225 +xref: Neural:plate +xref: RETIRED_EHDAA2:0001252 +xref: TAO:0000132 +xref: UMLS:C0920623 {source="ncithesaurus:Neural_Plate"} +xref: VHOG:0000068 +xref: XAO:0000249 +xref: ZFA:0000132 +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium +is_a: UBERON:0016879 ! future central nervous system +disjoint_from: UBERON:0011669 ! neural plate of carapace +relationship: developmentally_induced_by UBERON:0002328 {source="Wikipedia"} ! notochord +relationship: develops_from UBERON:0007284 ! presumptive neural plate +relationship: immediate_transformation_of UBERON:0007284 {source="Bgee:AN"} ! presumptive neural plate + +[Term] +id: UBERON:0003076 +name: posterior neural tube +xref: AAO:0011082 +xref: TAO:0007037 +xref: VHOG:0001383 +xref: XAO:0000250 +xref: ZFA:0007037 +is_a: UBERON:0002050 ! embryonic structure +disjoint_from: UBERON:0003080 {source="lexical"} ! anterior neural tube +relationship: develops_from UBERON:0003057 ! chordal neural plate +relationship: part_of UBERON:0001049 ! neural tube + +[Term] +id: UBERON:0003077 +name: paraxial mesoderm +def: "The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube[GO]" [GO:0048339, https://github.com/obophenotype/uberon/issues/30] +subset: efo_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "mesoderma paraxiale" RELATED LATIN [http://en.wikipedia.org/wiki/Paraxial_mesoderm] +synonym: "paraxial mesenchyme" EXACT [https://github.com/obophenotype/uberon/issues/30, https://github.com/obophenotype/uberon/wiki/The-neural-crest, ZFA:0000255] +synonym: "somitic mesoderm" EXACT [ISBN:9780878932504] +xref: AAO:0010568 +xref: EFO:0003515 +xref: EMAPA:16183 +xref: EMAPA:16751 +xref: FMA:293145 +xref: http://linkedlifedata.com/resource/umls/id/C1284009 +xref: http://www.snomedbrowser.com/Codes/Details/361475002 +xref: NCIT:C34244 +xref: Paraxial:mesoderm +xref: TAO:0000255 +xref: UMLS:C1284009 {source="ncithesaurus:Paraxial_Mesoderm"} +xref: VHOG:0000114 +xref: XAO:0000259 +xref: ZFA:0000255 +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue +is_a: UBERON:0015212 ! lateral structure +relationship: develops_from UBERON:0007285 ! presumptive paraxial mesoderm +relationship: existence_starts_during UBERON:0000109 ! gastrula stage +relationship: immediate_transformation_of UBERON:0007285 {source="Bgee:AN"} ! presumptive paraxial mesoderm +relationship: in_lateral_side_of UBERON:0000922 ! embryo + +[Term] +id: UBERON:0003078 +name: epibranchial placode +def: "Focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches and that produce the neuroblasts that migrate and condense to form the distal cranial ganglia." [VHOG:0000117] +subset: efo_slim +synonym: "epibranchial placodes" EXACT PLURAL [ZFA:0001294] +synonym: "ventrolateral placode" RELATED [ISBN:0471888893] +xref: AAO:0011036 +xref: EFO:0003455 +xref: FMA:293968 +xref: TAO:0001294 +xref: VHOG:0000117 +xref: XAO:0000284 +xref: ZFA:0001294 +is_a: UBERON:0009955 {source="NCBIBook:NBK53175", source="ZFA"} ! neurogenic placode +relationship: develops_from UBERON:0000076 {source="EHDAA2-abduced"} ! external ectoderm +relationship: has_potential_to_developmentally_contribute_to UBERON:0002410 ! autonomic nervous system +relationship: part_of UBERON:0000010 {source="ZFA"} ! peripheral nervous system + +[Term] +id: UBERON:0003079 +name: floor plate +def: "The specialized glial structure (non-neuronal cells) situated at the ventral midline of the embryonic neural tube; this structure spans the anteroposterior axis from the midbrain to the tail regions, separating the left and right basal plates of the developing neural tube, and serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube." [GO:0021508, http://en.wikipedia.org/wiki/Floor_plate, http://www.ncbi.nlm.nih.gov/pubmed/15738958, MGI:anna] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "bodenplatte" RELATED [BTO:0001720] +synonym: "floorplate" EXACT [] +synonym: "FP" RELATED [TAO:0000022] +synonym: "ventral plate" RELATED [BTO:0001720] +xref: AAO:0011041 +xref: BTO:0001720 +xref: EFO:0003473 +xref: EMAPA:32684 +xref: Floor:plate +xref: RETIRED_EHDAA2:0000545 +xref: TAO:0000022 +xref: ZFA:0000022 +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: develops_from UBERON:0002328 {source="Wikipedia"} ! notochord +relationship: develops_from UBERON:0007286 ! presumptive floor plate +relationship: immediate_transformation_of UBERON:0007286 ! presumptive floor plate +relationship: in_ventral_side_of UBERON:0001049 ! neural tube +relationship: part_of UBERON:0001049 ! neural tube + +[Term] +id: UBERON:0003080 +name: anterior neural tube +xref: AAO:0011012 +xref: TAO:0007038 +xref: VHOG:0001384 +xref: XAO:0000307 +xref: ZFA:0007038 +is_a: UBERON:0002050 ! embryonic structure +relationship: develops_from UBERON:0003056 ! pre-chordal neural plate +relationship: part_of UBERON:0001049 ! neural tube + +[Term] +id: UBERON:0003081 +name: lateral plate mesoderm +alt_id: UBERON:0006258 +def: "Portion of the middle of the three primary germ layers of the embryo that resides on the periphery of the embryo, is continuous with the extra-embryonic mesoderm, splits into two layers enclosing the intra-embryonic coelom, and gives rise to body wall structures[MP]." [http://en.wikipedia.org/wiki/Lateral_plate_mesoderm, MP:0010117] +subset: pheno_slim +subset: uberon_slim +synonym: "lateral mesoderm" EXACT [GO:0048368] +synonym: "lateral plate" RELATED [] +synonym: "lateral plate mesenchyme" RELATED [EHDAA2:0000919] +synonym: "LPM" EXACT ABBREVIATION [ZFA:0000121] +synonym: "mesoderma laminae lateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_plate_mesoderm] +xref: AAO:0010574 +xref: EHDAA2:0000919 +xref: EHDAA:379 +xref: EMAPA:16179 +xref: FMA:293149 +xref: http://en.wikipedia.org/wiki/Lateral_plate_mesoderm +xref: http://linkedlifedata.com/resource/umls/id/C1517749 +xref: http://www.snomedbrowser.com/Codes/Details/361477005 +xref: NCIT:C34199 +xref: TAO:0000121 +xref: UMLS:C1517749 {source="ncithesaurus:Lateral_Mesoderm"} +xref: VHOG:0000118 +xref: XAO:0000311 +xref: ZFA:0000121 +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue +relationship: part_of UBERON:0000926 {source="EHDAA2", source="VHOG"} ! mesoderm +relationship: surrounds UBERON:0003887 ! intraembryonic coelom + +[Term] +id: UBERON:0003082 +name: myotome +def: "A transitional population of migrating mesenchymal cells that derive from somites and that will become muscle cells." [AEO:0001018] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "muscle plate" RELATED [] +synonym: "myomere" RELATED [] +synonym: "myomeres" EXACT PLURAL [TAO:0001056] +synonym: "myotome region" RELATED [] +synonym: "myotomes" RELATED [] +synonym: "myotomus" RELATED LATIN [http://en.wikipedia.org/wiki/Myotome] +xref: AAO:0011067 +xref: AEO:0001018 +xref: BTO:0000742 +xref: EHDAA2_RETIRED:0003431 +xref: EHDAA:1721 +xref: EHDAA:1727 +xref: EHDAA:1733 +xref: EHDAA:1739 +xref: EMAPA:32841 +xref: FMA:295658 +xref: http://en.wikipedia.org/wiki/Myotome +xref: http://linkedlifedata.com/resource/umls/id/C1513802 +xref: http://www.snomedbrowser.com/Codes/Details/344535001 +xref: NCIT:C34214 +xref: TAO:0001056 +xref: UMLS:C1513802 {source="ncithesaurus:Myotome_Region"} +xref: VHOG:0001244 +xref: XAO:0000315 +xref: ZFA:0001056 +is_a: UBERON:0017650 {source="AEO"} ! developing mesenchymal structure +relationship: contributes_to_morphology_of UBERON:0001630 ! muscle organ +relationship: develops_from UBERON:0004290 {source="EHDAA2-abduced"} ! dermomyotome + +[Term] +id: UBERON:0003083 +name: trunk neural crest +def: "Trunk portion of the neural crest. The trunk neural crest lies between the vagal and sacral neural crest and gives rise to two groups of cells. One group migrates dorsolateral and populates the skin, forming pigment cells and the other migrates ventrolateral through the anterior sclerotome to become the epinephrine-producing cells of the adrenal gland and the neurons of the sympathetic nervous system. Some cells remain in the sclerotome to form the dorsal root ganglia [Wikipedia]." [http://en.wikipedia.org/wiki/Trunk_neural_crest, ISBN:0815318960] +subset: efo_slim +subset: uberon_slim +synonym: "TNC" EXACT ABBREVIATION [XAO:0000319] +synonym: "trunk crest" RELATED [] +xref: AAO:0010582 +xref: EFO:0003605 +xref: EHDAA2:0001901 +xref: http://en.wikipedia.org/wiki/Trunk_neural_crest +xref: TAO:0001024 +xref: VHOG:0000062 +xref: XAO:0000319 +xref: ZFA:0001024 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002342 ! neural crest + +[Term] +id: UBERON:0003084 +name: heart primordium +def: "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline to form the heart rudiment or cone." [ZFIN:curator] +subset: uberon_slim +synonym: "cardiac field" RELATED [ZFA:0000028] +synonym: "fused heart primordium" RELATED [] +xref: AAO:0011044 +xref: BTO:0001887 +xref: http://linkedlifedata.com/resource/umls/id/C1514450 +xref: NCIT:C34276 +xref: TAO:0000028 +xref: UMLS:C1514450 {source="ncithesaurus:Primordium_of_the_Heart"} +xref: XAO:0000336 +xref: ZFA:0000028 +is_a: UBERON:0001048 {source="Obol"} ! primordium +relationship: develops_from UBERON:0003081 {source="ZFA"} ! lateral plate mesoderm +relationship: develops_from UBERON:0004140 ! primary heart field +relationship: develops_from UBERON:0007005 {source="XAO"} ! cardiogenic splanchnic mesoderm +relationship: part_of UBERON:0004535 {source="ZFA"} ! cardiovascular system + +[Term] +id: UBERON:0003085 +name: ventral aorta +def: "The ventral aorta is a blood vessel in a single-pass circulatory system that carries de-oxygenated blood from the heart to the gills. In a single-pass circulatory system blood passes once through the heart to supply the body once[GO]." [GO:0035908] +comment: Taxon notes (via vHOG): "When vertebrates first appeared, they must have possessed a ventral and dorsal aorta with aortic arches between them." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.620. // in Reptiles, splits to form bases of 3 arteries: left aortic arch, right aortic arch and pulmonary trunk. In birds, the right systemic arch becomes predominant, the left never fully develops [Kardong] +subset: uberon_slim +xref: AAO:0010412 +xref: BTO:0004674 +xref: TAO:0000604 +xref: VHOG:0000121 +xref: XAO:0000338 +xref: ZFA:0000604 +is_a: UBERON:0000947 ! aorta +relationship: channels_from UBERON:0000948 ! heart + +[Term] +id: UBERON:0003086 +name: caudal artery +def: "Extension of the dorsal aorta in the tail." [http://en.wikipedia.org/wiki/Caudal_artery, ZFIN:curator] +subset: efo_slim +subset: uberon_slim +synonym: "CA" RELATED [] +xref: AAO:0011023 +xref: Caudal:artery +xref: EFO:0003472 +xref: TAO:0000011 +xref: VHOG:0000123 +xref: XAO:0000364 +xref: ZFA:0000011 +is_a: UBERON:0003513 ! trunk blood vessel +is_a: UBERON:0003524 ! tail blood vessel +is_a: UBERON:0004573 ! systemic artery +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0005805 ! dorsal aorta +intersection_of: part_of UBERON:0007812 ! post-anal tail +relationship: branching_part_of UBERON:0005805 ! dorsal aorta +relationship: part_of UBERON:0005805 ! dorsal aorta +relationship: part_of UBERON:2001073 ! axial vasculature + +[Term] +id: UBERON:0003087 +name: anterior cardinal vein +alt_id: UBERON:0009770 +def: "One of the the two paired cardinal veins draining the cephalic part of the body." [http://en.wikipedia.org/wiki/Anterior_cardinal_vein, ISBN:0073040584, MP:0004784] +comment: contribute to the formation of the internal jugular veins and together with the common cardinal vein form the superior vena cava. In an anastomosis by anterior cardinal veins, the left brachiocephalic vein is produced[WP] +subset: pheno_slim +subset: vertebrate_core +synonym: "ACV" RELATED [] +synonym: "precardinal vein" RELATED [FMA:70309, http://en.wikipedia.org/wiki/Anterior_cardinal_vein] +synonym: "rostral cardinal vein" EXACT [ZFA:0000423] +synonym: "rostral cardinal veins" RELATED [] +synonym: "superior cardinal vein" RELATED [http://www.embryology.ch/anglais/pcardio/venen01.html] +xref: AAO:0011011 +xref: BTO:0004387 +xref: EHDAA:1312 +xref: EMAPA:16241 +xref: FMA:70309 +xref: http://en.wikipedia.org/wiki/Anterior_cardinal_vein +xref: http://linkedlifedata.com/resource/umls/id/C0231086 +xref: http://www.snomedbrowser.com/Codes/Details/308780006 +xref: NCIT:C34108 +xref: TAO:0000423 +xref: UMLS:C0231086 {source="ncithesaurus:Anterior_Cardinal_Vein"} +xref: VHOG:0000113 +xref: XAO:0000383 +xref: ZFA:0000423 +is_a: UBERON:0004344 ! cardinal vein +relationship: channels_from UBERON:0002200 ! vasculature of head + +[Term] +id: UBERON:0003088 +name: caudal vein +def: "Vein in the tail returning blood from the trunk and tail to the heart, leads directly into the posterial cardinal vein in the posterior trunk. Kimmel et al, 1995.[ZFIN]" [ZFIN:curator] +subset: efo_slim +subset: uberon_slim +synonym: "CV" RELATED [] +xref: AAO:0011025 +xref: EFO:0003616 +xref: NCIT:C92598 +xref: TAO:0000180 +xref: VHOG:0000126 +xref: XAO:0000390 +xref: ZFA:0000180 +is_a: UBERON:0003481 ! tail vein + +[Term] +id: UBERON:0003089 +name: sclerotome +def: "Ventral somitic compartment that is a precursor of the axial skeleton[XAO]. Sclerotomes eventually differentiate into the vertebrae and most of the skull. The caudal (posterior) half of one sclerotome fuses with the rostral (anterior) half of the adjacent one to form each vertebra. From their initial location within the somite, the sclerotome cells migrate medially towards the notochord. These cells meet the sclerotome cells from the other side to form the vertebral body. From this vertebral body, sclerotome cells move dorsally and surround the developing spinal cord, forming the vertebral arch[WP]." [http://en.wikipedia.org/wiki/Sclerotome, https://github.com/obophenotype/uberon/issues/316, XB:curator] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "sclerotomes" EXACT PLURAL [TAO:0001080] +synonym: "sclerotomus" RELATED LATIN [http://en.wikipedia.org/wiki/Sclerotome] +xref: AAO:0010571 +xref: AEO:0000212 +xref: EHDAA2:0003439 +xref: EMAPA:31159 +xref: FMA:295652 +xref: http://en.wikipedia.org/wiki/Sclerotome +xref: http://linkedlifedata.com/resource/umls/id/C0183176 +xref: NCIT:C34287 +xref: TAO:0001080 +xref: UMLS:C0183176 {source="ncithesaurus:Sclerotome"} +xref: VHOG:0000680 +xref: XAO:0000397 +xref: ZFA:0001080 +is_a: UBERON:0005856 {source="EHDAA2"} ! developing mesenchymal condensation +is_a: UBERON:0007530 {source="EHDAA2"} ! migrating mesenchyme population +relationship: develops_from UBERON:0002329 {source="ZFA"} ! somite + +[Term] +id: UBERON:0003090 +name: supraorbital lateral line +def: "The lateral line that is located above the eye." [ISBN:0471888893, VHOG:0000128] +subset: uberon_slim +synonym: "supraorbital lateral lines" RELATED PLURAL [ZFA:0000443] +synonym: "supraorbital line" EXACT [ZFA:0000443] +xref: AAO:0011103 +xref: TAO:0000443 +xref: VHOG:0000128 +xref: XAO:0000442 +xref: ZFA:0000443 +is_a: UBERON:2001470 ! anterior lateral line + +[Term] +id: UBERON:0003091 +name: thyroid primordium +def: "The initial thyroid precursor, the thyroid primordium, starts as a simple midline thickening and develops to form the thyroid diverticulum. This structure is initially hollow, although it later solidifies and becomes bilobed. The 2 lobes are located on either side of the midline and are connected via an isthmus." [http://emedicine.medscape.com/article/845125-overview] +subset: vertebrate_core +synonym: "thyroid primordia" RELATED PLURAL [ZFA:0001081] +xref: AAO:0011106 +xref: BTO:0004709 +xref: EHDAA2:0002033 +xref: EHDAA:952 +xref: EMAPA:16361 +xref: http://linkedlifedata.com/resource/umls/id/C1519512 +xref: NCIT:C34312 +xref: TAO:0001081 +xref: UMLS:C1519512 {source="ncithesaurus:Thyroid_Primordium"} +xref: XAO:0000444 +xref: ZFA:0001081 +is_a: UBERON:0000479 {source="ZFA"} ! tissue +is_a: UBERON:0001048 ! primordium +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: develops_from UBERON:0007123 {source="http://www.ncbi.nlm.nih.gov/pubmed/16313389", source="ISBN:0073040584"} ! pharyngeal pouch 2 +relationship: part_of UBERON:0000949 {source="ZFA"} ! endocrine system +relationship: part_of UBERON:0001042 {source="VHOG"} ! chordate pharynx + +[Term] +id: UBERON:0003092 +name: ultimobranchial body +def: "An outpocketing of one of the caudal pharyngeal pouches that is comprised on calcitonin-producing parafollicular cells." [http://en.wikipedia.org/wiki/Ultimopharyngeal_body, ISBN:0073040584, MP:0003955] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "corpus ultimopharyngeum" EXACT LATIN [http://en.wikipedia.org/wiki/Ultimobranchial_body] +synonym: "postbranchial body" RELATED [http://en.wikipedia.org/wiki/Ultimobranchial_body] +synonym: "telobranchial body" RELATED [MP:0003955] +synonym: "telopharyngeal body" RELATED [MP:0003955] +synonym: "ultimobranchial" RELATED [http://en.wikipedia.org/wiki/Ultimobranchial_body] +synonym: "ultimobranchial bodies" RELATED PLURAL [http://en.wikipedia.org/wiki/Ultimobranchial_body] +synonym: "ultimobranchial gland" EXACT [http://en.wikipedia.org/wiki/Ultimobranchial_body] +synonym: "ultimopharyngeal body" EXACT [http://en.wikipedia.org/wiki/Ultimobranchial_body] +synonym: "ultimopharyngeal gland" EXACT [http://en.wikipedia.org/wiki/Ultimobranchial_body] +xref: AAO:0010547 +xref: EHDAA2:0002103 +xref: EHDAA:2987 +xref: EHDAA:9139 +xref: EMAPA:36030 +xref: GAID:1246 +xref: http://www.snomedbrowser.com/Codes/Details/345552007 +xref: MESH:D014460 +xref: TAO:0001448 +xref: Ultimopharyngeal:body +xref: VHOG:0001185 +xref: XAO:0000452 +xref: ZFA:0001448 +is_a: UBERON:0002368 {source="EHDAA2"} ! endocrine gland +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0004117 {source="ISBN:0073040584"} ! pharyngeal pouch + +[Term] +id: UBERON:0003093 +name: occipital lateral line +subset: uberon_slim +synonym: "supratemporal lateral line" RELATED [] +xref: AAO:0011075 +xref: TAO:0000400 +xref: VHOG:0000131 +xref: XAO:0000458 +xref: ZFA:0000400 +is_a: UBERON:2001470 ! anterior lateral line + +[Term] +id: UBERON:0003094 +name: infraorbital lateral line +def: "The lateral line that is located below the eye." [ISBN:0471888893, VHOG:0000132] +subset: uberon_slim +synonym: "infraorbital line" EXACT [ZFA:0000524] +xref: AAO:0011053 +xref: TAO:0000524 +xref: VHOG:0000132 +xref: XAO:0000459 +xref: ZFA:0000524 +is_a: UBERON:2001470 ! anterior lateral line + +[Term] +id: UBERON:0003095 +name: dorsal lateral line +def: "A lateral line that is located in the dorsal part of the organism." [http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "dorsal lateral lines" RELATED PLURAL [ZFA:0005112] +xref: AAO:0011030 +xref: TAO:0005112 +xref: VHOG:0001677 +xref: XAO:0000462 +xref: ZFA:0005112 +is_a: UBERON:0010202 ! lateral line + +[Term] +id: UBERON:0003096 +name: middle lateral line +subset: uberon_slim +synonym: "middle lateral lines" RELATED PLURAL [ZFA:0000344] +xref: TAO:0000344 +xref: VHOG:0000133 +xref: XAO:0000463 +xref: ZFA:0000344 +is_a: UBERON:2001470 ! anterior lateral line + +[Term] +id: UBERON:0003097 +name: dorsal fin +def: "Median fin located on the dorsal surface of the organism." [TAO:curator, VSAO:0000165] +subset: uberon_slim +synonym: "nageoire dorsale@fr" EXACT [VSAO:0000165] +synonym: "notoptérygie@fr" EXACT [VSAO:0000165] +xref: AAO:0010378 +xref: BTO:0004650 +xref: Dorsal:fin +xref: http://www.snomedbrowser.com/Codes/Details/417127006 +xref: OpenCyc:Mx4rvVjbzZwpEbGdrcN5Y29ycA +xref: TAO:0001173 +xref: VSAO:0000165 +xref: XAO:0000469 +xref: ZFA:0001173 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4000162 ! median fin +intersection_of: UBERON:0008897 ! fin +intersection_of: has_skeleton UBERON:4000168 ! dorsal fin skeleton +relationship: has_developmental_contribution_from UBERON:0003083 ! trunk neural crest +relationship: has_skeleton UBERON:4000168 ! dorsal fin skeleton +relationship: part_of UBERON:0001137 ! dorsum + +[Term] +id: UBERON:0003098 +name: optic stalk +def: "the narrow, proximal portion of the optic vesicle which connects the embryonic eye and forebrain" [ISBN:0-914294-08-3, MP:0004268] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "optic stalks" RELATED PLURAL [ZFA:0000137] +synonym: "pedunculus opticus" RELATED LATIN [http://en.wikipedia.org/wiki/Optic_stalk] +xref: AAO:0011077 +xref: EHDAA2:0001318 +xref: EHDAA:3816 +xref: EMAPA:16678 +xref: http://linkedlifedata.com/resource/umls/id/C0231107 +xref: http://www.snomedbrowser.com/Codes/Details/308788004 +xref: NCIT:C34235 +xref: Optic:stalk +xref: TAO:0000137 +xref: UMLS:C0231107 {source="ncithesaurus:Optic_Stalk"} +xref: VHOG:0000223 +xref: XAO:0000475 +xref: ZFA:0000137 +is_a: UBERON:0010371 ! ecto-epithelium +is_a: UBERON:0034705 {source="EHDAA2"} ! developing neuroepithelium +relationship: develops_from UBERON:0003072 ! optic cup +relationship: part_of UBERON:0001894 ! diencephalon + +[Term] +id: UBERON:0003099 +name: cranial neural crest +def: "neural crest cells (NCCs) originating in the anterior part of the developing embryo and residing between the mid-diencephalon and the forming hindbrain; cranial NCCs migrate dorsolaterally to form the craniofacial mesenchyme that differentiates into various craniofacial cartilages and bones, cranial neurons, glia, and connective tissues of the face; these cells enter the pharyngeal pouches and arches where they give rise to thymic cells, bones of the middle ear and jaw (mandible), and the odontoblasts of the tooth primordia; like their counterparts in the trunk, cranial NCCs also contribute to the developing peripheral nervous system, along with the pigmented cell (i.e. melanocyte) lineage." [MGI:anna] +subset: efo_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "cephalic neural crest" EXACT [EMAPA:16091] +synonym: "CNC" EXACT ABBREVIATION [XAO:0001001] +synonym: "cranial NCC population" EXACT [] +synonym: "crista neuralis cranialis" RELATED LATIN [http://en.wikipedia.org/wiki/Cranial_neural_crest] +synonym: "head crest" RELATED [] +synonym: "head NCC population" EXACT [] +synonym: "head neural crest" RELATED [] +xref: AAO:0010580 +xref: EFO:0003645 +xref: EHDAA2:0004420 +xref: EMAPA:16091 +xref: http://en.wikipedia.org/wiki/Cranial_neural_crest +xref: TAO:0001194 +xref: VHOG:0000063 +xref: XAO:0001001 +xref: ZFA:0001194 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002342 ! neural crest + +[Term] +id: UBERON:0003100 +name: female organism +def: "Gonochoristic organism that can produce female gametes." [CARO:0000028] +subset: pheno_slim +subset: vertebrate_core +synonym: "female" RELATED [TAO:0000303] +synonym: "female human body" NARROW SENSU [FMA:67812] +xref: AAO:0010030 +xref: BILA:0000028 +xref: CARO:0000028 +xref: FBbt:00007011 +xref: FMA:67812 +xref: HAO:0000028 +xref: http://www.snomedbrowser.com/Codes/Details/362608006 +xref: TAO:0000303 +xref: TGMA:0001839 +xref: XAO:0003005 +xref: ZFA:0000303 +is_a: UBERON:0000468 ! multicellular organism +disjoint_from: UBERON:0003101 ! male organism + +[Term] +id: UBERON:0003101 +name: male organism +def: "Gonochoristic organism that can produce male gametes." [CARO:0000027] +subset: pheno_slim +subset: vertebrate_core +synonym: "male" RELATED [TAO:0000242] +synonym: "male human body" NARROW SENSU [FMA:67811] +xref: AAO:0010033 +xref: BILA:0000027 +xref: CARO:0000027 +xref: FBbt:00007004 +xref: FMA:67811 +xref: HAO:0000027 +xref: http://www.snomedbrowser.com/Codes/Details/362609003 +xref: TAO:0000242 +xref: TGMA:0001838 +xref: WBbt:0007850 +xref: XAO:0003006 +xref: ZFA:0000242 +is_a: UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0003102 +name: surface structure +def: "Anatomical structure that overlaps the outer epithelial layer and is adjacent to the space surrounding the organism." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/24] +subset: upper_level +synonym: "anatomical surface feature" EXACT [EHDAA2:0003010] +synonym: "surface feature" RELATED [] +synonym: "surface region" RELATED [] +synonym: "surface structures" RELATED PLURAL [ZFA:0000292] +xref: AAO:0010337 +xref: AEO_RETIRED:0000010 +xref: EHDAA2_RETIRED:0003010 +xref: galen:SurfaceRegion +xref: Surface:structure +xref: TAO:0000292 +xref: VSAO:0000001 +xref: XAO:0003028 +xref: ZFA:0000292 +is_a: UBERON:0000061 ! anatomical structure +relationship: adjacent_to UBERON:0013514 ! space surrounding organism +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/wdahdul +relationship: part_of UBERON:0002416 ! integumental system + +[Term] +id: UBERON:0003103 +name: compound organ +def: "Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types." [CARO:0000024] +subset: organ_slim +subset: upper_level +synonym: "organ" RELATED [] +xref: AAO:0010015 +xref: AEO:0000024 +xref: BILA:0000024 +xref: CARO:0000024 +xref: EHDAA2:0003024 +xref: HAO:0000024 +xref: TADS:0000598 +xref: TAO:0000496 +xref: TGMA:0001837 +xref: VHOG:0001723 +xref: XAO:0003041 +xref: ZFA:0000496 +is_a: UBERON:0000062 ! organ + +[Term] +id: UBERON:0003104 +name: mesenchyme +def: "Portion of tissue composed of mesenchymal cells (motile cells that develop from epthelia via an epithelial to mesenchymal transition) and surrounding extracellular material. Mesenchyme has different embryological origins in different metazoan taxa - in many invertebrates it derives in whole or part from ectoderm. In vertebrates it derives largely from mesoderm, and sometimes the terms are used interchangeably, e.g. lateral plate mesoderm/mesenchyme." [https://archive.org/details/invertebratesnde00brus/page/n240/mode/2up, https://en.wikipedia.org/wiki/Mesenchyme, https://github.com/obophenotype/uberon/issues/1641] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "mesenchyma" RELATED LATIN [http://en.wikipedia.org/wiki/Mesenchyme] +synonym: "mesenchymal tissue" EXACT [] +synonym: "mesenchyme tissue" EXACT [] +synonym: "portion of mesenchymal tissue" EXACT [] +synonym: "portion of mesenchyme tissue" EXACT [] +xref: AAO:0010427 +xref: AEO:0000145 +xref: BTO:0001393 +xref: CALOHA:TS-0620 +xref: EHDAA2:0003145 +xref: EV:0100007 +xref: http://en.wikipedia.org/wiki/Mesenchyme +xref: http://linkedlifedata.com/resource/umls/id/C0162415 +xref: NCIT:C13301 +xref: TAO:0000393 +xref: UMLS:C0162415 {source="ncithesaurus:Mesenchyme"} +xref: VHOG:0000170 +xref: XAO:0003046 +xref: ZFA:0000393 +is_a: UBERON:0000479 ! tissue + +[Term] +id: UBERON:0003105 +name: dorsal lateral plate region +def: "Region located near the pronephros and pronephric ducts that is a site of hematopoiesis in the embryo." [http://www.ncbi.nlm.nih.gov/pubmed/9618755, ZFIN:curator] +subset: efo_slim +subset: uberon_slim +synonym: "AGM region" RELATED [XAO:0003051] +synonym: "aorta-gonads-mesonephros region" RELATED [XAO:0003051] +synonym: "DLP" EXACT [XAO:0003051] +xref: AAO:0011008 +xref: XAO:0003051 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0000947 ! aorta +relationship: part_of UBERON:0002390 {source="XAO"} ! hematopoietic system +relationship: part_of UBERON:0003081 {source="XAO"} ! lateral plate mesoderm + +[Term] +id: UBERON:0003106 +name: urostyle +def: "In teleosts: Anatomical cluster that is the result of fusion of preural centrum 1 with one or more adjacent ural centra[AAO]; Rodlike caudal bony structure unique to anurans that lies within a compartment formed by the elongated, anteriorly oriented pelvic girdle. The urostyle is formed by the fusion of the coccyx and the hypochord[AAO]." [AAO:0000732, TAO:0000158] +comment: Grouping with AAO dubious +subset: uberon_slim +synonym: "compound caudal centrum" RELATED [TAO:0000158] +synonym: "compound centrum" RELATED [] +synonym: "compound terminal centrum" RELATED [TAO:0000158] +synonym: "compound terminal vertebra" RELATED [TAO:0000158] +synonym: "last vertebra" RELATED [] +synonym: "terminal centrum" RELATED [TAO:0000158] +synonym: "ultimate vertebra" RELATED [] +xref: AAO:0000732 +xref: TAO:0000158 +xref: XAO:0003080 +xref: ZFA:0000158 +is_a: UBERON:0002513 ! endochondral bone +relationship: part_of UBERON:0002090 ! postcranial axial skeleton + +[Term] +id: UBERON:0003107 +name: Meckel's cartilage +def: "Meckel's cartilage is the bilaterally paired, rod-like, cartilaginous ventral component of the lower jar, or ventral mandibular arch. It is typically resorbed in adults." [http://en.wikipedia.org/wiki/Meckel's_cartilage, http://www.ncbi.nlm.nih.gov/pubmed/3693112] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "cartilago arcus pharyngei primi" EXACT LATIN [] +synonym: "Meckels cartilage" EXACT [] +synonym: "primary mandinle" EXACT [http://www.briancoad.com] +synonym: "ventral mandibular cartilage" EXACT [ZFA:0001205] +xref: AAO:0000289 +xref: EHDAA2:0001072 +xref: EHDAA:7997 +xref: EMAPA:17635 +xref: FMA:295784 +xref: http://www.snomedbrowser.com/Codes/Details/308773009 +xref: MA:0001580 +xref: Meckel's:cartilage +xref: TAO:0001205 +xref: VHOG:0000249 +xref: XAO:0003085 +xref: ZFA:0001205 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0011004 {source="ZFA"} ! pharyngeal arch cartilage +is_a: UBERON:0013765 ! digestive system element +relationship: develops_from UBERON:0006263 ! Meckel's cartilage pre-cartilage condensation +relationship: part_of UBERON:0003278 {source="EHDAA2"} ! skeleton of lower jaw + +[Term] +id: UBERON:0003108 +name: suspensorium +def: "(1) the arrangement of bones which supports the jaw from the braincase; (2) in teleost fish, a large, usually triangular, bone which supports the jaw. The teleost suspensorium is formed by fusion of various elements which vary among different taxa." [http://palaeos.com/vertebrates/glossary/glossarySq.html] +synonym: "hyopalatine" EXACT [TAO:0000444] +synonym: "mandibular suspensorium" RELATED [] +synonym: "suspensoria" EXACT [TAO:0000444] +xref: AAO:0000596 +xref: TAO:0000444 +xref: XAO:0003086 +xref: ZFA:0000444 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010912 ! subdivision of skeleton +relationship: part_of UBERON:0008895 {source="ZFA"} ! splanchnocranium + +[Term] +id: UBERON:0003109 +name: parapophysis +def: "Endochondral bone that forms from a lateral outgrowth of the basiventral arcualia and connects the rib with the vertebral centrum[TAO]. A lateral or ventrolateral projections of vertebrae to which ribs are attached in Danio rerio. ZFA: They can arise through replacement ossification of a basiventral or form directly in bone. They are separated from the centrum in basal teleosts, e.g., Leptolepis coryphaenoides, Megalops and Elops." [ZFIN:curator] +subset: uberon_slim +synonym: "lateral process of basiventral" EXACT [ZFA:0001362] +synonym: "parapophyses" EXACT PLURAL [TAO:0001362] +synonym: "transverse apophyses" EXACT PLURAL [TAO:0001362] +synonym: "transverse apophysis" EXACT [TAO:0001362] +xref: AAO:0000708 +xref: TAO:0001362 +xref: ZFA:0001362 +is_a: UBERON:0001077 ! transverse process of vertebra +relationship: part_of UBERON:0002090 ! postcranial axial skeleton + +[Term] +id: UBERON:0003110 +name: otic region +synonym: "cranial vault" RELATED [ZFA:0000189] +xref: AAO:0010208 +xref: TAO:0000189 +xref: XAO:0003175 +xref: ZFA:0000189 +is_a: UBERON:0034921 ! multi organ part structure +relationship: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0002241 ! chondrocranium + +[Term] +id: UBERON:0003111 +name: sphenoid region +def: "Anatomical cluster that forms the floor and sidewalls of the middle part of the cranium." [TAO:0000290, UBERONREF:0000007] +xref: AAO:0010207 +xref: TAO:0000290 +xref: XAO:0003174 +xref: ZFA:0000290 +is_a: UBERON:0034921 ! multi organ part structure +relationship: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0002241 ! chondrocranium + +[Term] +id: UBERON:0003112 +name: olfactory region +def: "Anatomical cluster that is located in the anterior region of the cranium and provides structural support for the olfactory organ." [TAO:0000351] +subset: efo_slim +synonym: "ethmoid region" RELATED [ZFA:0000351] +xref: AAO:0010206 +xref: EFO:0003525 +xref: NCIT:C98765 +xref: TAO:0000351 +xref: XAO:0003172 +xref: ZFA:0000351 +is_a: UBERON:0034921 ! multi organ part structure +relationship: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0002241 ! chondrocranium + +[Term] +id: UBERON:0003113 +name: dermatocranium +def: "Subdivision of skeleton that includes all dermal bones in the cranial skeleton[ZFA,modified]." [http://en.wikipedia.org/wiki/Skull_roof, ZFA:0000863] +synonym: "dendrocranium" EXACT [TAO:0000863] +synonym: "dermal bone cranium" RELATED [ZFA:0000863] +synonym: "dermal part of skull" RELATED [] +synonym: "dermal skull bones" RELATED [] +synonym: "dermal skull roof" NARROW [http://en.wikipedia.org/wiki/Skull_roof, http://www.ncbi.nlm.nih.gov/pubmed/11523816] +synonym: "dermatocranial cover" NARROW [] +synonym: "exocranium" EXACT [UBERONREF:0000007] +synonym: "roof of skull" NARROW [http://en.wikipedia.org/wiki/Skull_roof] +synonym: "roofing bones of the skull" RELATED [http://en.wikipedia.org/wiki/Skull_roof] +synonym: "skull exoskeleton" RELATED [] +synonym: "skull roof" NARROW [http://en.wikipedia.org/wiki/Skull_roof, http://www.ncbi.nlm.nih.gov/pubmed/11523816] +xref: AAO:0010154 +xref: Skull:roof +xref: TAO:0000863 +xref: VHOG:0001665 +xref: XAO:0003169 +xref: ZFA:0000863 +is_a: UBERON:0011159 ! primary subdivision of cranial skeletal system +relationship: part_of UBERON:0010364 ! dermal skeleton + +[Term] +id: UBERON:0003114 +name: pharyngeal arch 3 +def: "The third branchial arch contributes to the development of the hyoid bone, stylopharyngeus muscle, inferior parathyroid gland, and thymus." [MP:0006339] +subset: pheno_slim +subset: vertebrate_core +synonym: "3rd arch" RELATED [EHDAA2:0000069] +synonym: "3rd pharyngeal arch" EXACT [] +synonym: "3rd visceral arch" RELATED [VHOG:0000298] +synonym: "branchial arch 1" RELATED SENSU [AAO:0010365, ZFA:0001606] +synonym: "first branchial arch" RELATED SENSU [ZFA:0001606] +synonym: "first gill arch" EXACT SENSU [ZFA:0001606] +synonym: "gill arch 1" EXACT SENSU [ZFA:0001606] +synonym: "third pharyngeal arch" EXACT [] +synonym: "third visceral arch" EXACT [] +synonym: "visceral arch 3" EXACT [] +xref: AAO:0010365 +xref: EHDAA2:0000069 +xref: EHDAA:1080 +xref: EMAPA:16399 +xref: FMA:293029 +xref: http://www.snomedbrowser.com/Codes/Details/308769006 +xref: TAO:0001598 +xref: VHOG:0000298 +xref: XAO:0000447 +xref: ZFA:0001606 +is_a: UBERON:0002539 ! pharyngeal arch + +[Term] +id: UBERON:0003115 +name: pharyngeal arch 4 +def: "contributes to development of the cartilage of the larynx, laryngeal, pharyngeal, and soft palate muscles, superior parathyroid gland, and C-cells of the thymus" [MP:0006340] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "4th arch" RELATED [EHDAA2:0000086] +synonym: "4th branchial arch" EXACT SENSU [] +synonym: "4th pharyngeal arch" EXACT [] +synonym: "4th visceral arch" EXACT [] +synonym: "branchial arch 2" RELATED SENSU [AAO:0010366, ZFA:0001607] +synonym: "fourth pharyngeal arch" EXACT [] +synonym: "fourth visceral arch" RELATED [VHOG:0000299] +synonym: "gill arch 2" EXACT SENSU [ZFA:0001607] +synonym: "second branchial arch" RELATED SENSU [ZFA:0001607] +synonym: "second gill arch" EXACT SENSU [ZFA:0001607] +synonym: "visceral arch 4" EXACT [] +xref: AAO:0010366 +xref: EHDAA2:0000086 +xref: EHDAA:1663 +xref: EMAPA:16760 +xref: FMA:293035 +xref: http://www.snomedbrowser.com/Codes/Details/308770007 +xref: TAO:0001599 +xref: VHOG:0000299 +xref: XAO:0000449 +xref: ZFA:0001607 +is_a: UBERON:0002539 ! pharyngeal arch + +[Term] +id: UBERON:0003116 +name: pharyngeal arch 5 +synonym: "5th pharyngeal arch" RELATED [VHOG:0001204] +synonym: "5th visceral arch" RELATED [VHOG:0001204] +synonym: "branchial arch 3" RELATED [ZFA:0001608] +synonym: "branchial arch 3" RELATED SENSU [AAO:0010367, XAO:0000451] +synonym: "fifth pharyngeal arch" RELATED [VHOG:0001204] +synonym: "fifth visceral arch" EXACT [XAO:0000451] +synonym: "gill arch 3" EXACT [ZFA:0001608] +synonym: "third branchial arch" RELATED SENSU [XAO:0000451] +synonym: "visceral arch 5" EXACT [ZFA:0001608] +xref: AAO:0010367 +xref: FMA:293045 +xref: http://www.snomedbrowser.com/Codes/Details/308771006 +xref: TAO:0001600 +xref: VHOG:0001204 +xref: XAO:0000451 +xref: ZFA:0001608 +is_a: UBERON:0002539 ! pharyngeal arch + +[Term] +id: UBERON:0003117 +name: pharyngeal arch 6 +alt_id: UBERON:0004349 +def: "The 6th pharyngeal arch. contributes to the development of the sternocleidomastoid and trapezius muscles" [MP:0006347] +subset: pheno_slim +synonym: "6th arch" EXACT [EHDAA2:0004075] +synonym: "6th pharyngeal arch" RELATED [VHOG:0001205] +synonym: "6th visceral arch" RELATED [VHOG:0001205] +synonym: "branchial arch 4" RELATED SENSU [AAO:0010368, ZFA:0001609] +synonym: "fourth branchial arch" RELATED SENSU [] +synonym: "gill arch 4" EXACT [ZFA:0001609] +synonym: "sixth branchial arch" EXACT [] +synonym: "sixth pharyngeal arch" RELATED [VHOG:0001205] +synonym: "sixth visceral arch" RELATED [XAO:0000453] +synonym: "visceral arch 6" EXACT [ZFA:0001609] +xref: AAO:0010368 +xref: EHDAA2:0004075 +xref: EMAPA:32766 +xref: FMA:293047 +xref: http://www.snomedbrowser.com/Codes/Details/308772004 +xref: TAO:0001601 +xref: VHOG:0001205 +xref: XAO:0000453 +xref: ZFA:0001609 +is_a: UBERON:0002539 ! pharyngeal arch + +[Term] +id: UBERON:0003118 +name: pharyngeal arch artery 1 +alt_id: UBERON:0004371 +def: "The vessels formed within the first pair of branchial arches in embryogenesis" [MP:0010355] +subset: pheno_slim +subset: vertebrate_core +synonym: "1st aortic arch artery" RELATED [EMAPA:16685] +synonym: "1st arch artery" EXACT [EMAPA:16685] +synonym: "1st branchial arch artery" RELATED [EMAPA:16685] +synonym: "1st pharyngeal arch artery" RELATED [EMAPA:16685] +synonym: "AA1" EXACT [ZFA:0005005] +synonym: "aortic arch 1" EXACT [ZFA:0005005] +synonym: "first aortic arch" EXACT [XAO:0000342] +synonym: "first arch artery" RELATED [EMAPA:16685] +synonym: "first branchial arch artery" EXACT [] +synonym: "mandibular aortic arch" EXACT [ZFA:0005005] +xref: AAO:0010415 +xref: EHDAA2:0000007 +xref: EMAPA:16202 +xref: EMAPA:16685 +xref: http://www.snomedbrowser.com/Codes/Details/308774003 +xref: TAO:0005005 +xref: VHOG:0000149 +xref: XAO:0000342 +xref: ZFA:0005005 +is_a: UBERON:0004363 ! pharyngeal arch artery +intersection_of: UBERON:0004363 ! pharyngeal arch artery +intersection_of: part_of UBERON:0004362 ! pharyngeal arch 1 +relationship: contributes_to_morphology_of UBERON:0004362 ! pharyngeal arch 1 +relationship: part_of UBERON:0004362 ! pharyngeal arch 1 + +[Term] +id: UBERON:0003119 +name: pharyngeal arch artery 2 +alt_id: UBERON:0004372 +def: "The vessels formed within the second pair of branchial arches in embryogenesis" [MP:0010356] +subset: pheno_slim +subset: vertebrate_core +synonym: "2nd aortic arch artery" RELATED [EMAPA:16686] +synonym: "2nd arch artery" EXACT [EHDAA2:0000051] +synonym: "2nd branchial arch artery" RELATED [EMAPA:16686] +synonym: "2nd pharyngeal arch artery" RELATED [EMAPA:16686] +synonym: "AA2" EXACT [ZFA:0005006] +synonym: "aortic arch 2" EXACT [ZFA:0005006] +synonym: "hyoid aortic arch" EXACT [ZFA:0005006] +synonym: "second aortic arch" EXACT [XAO:0000343] +synonym: "second branchial arch artery" EXACT [] +xref: AAO:0010418 +xref: Arches_1_and_2 +xref: EHDAA2:0000051 +xref: EMAPA:16203 +xref: EMAPA:16686 +xref: http://www.snomedbrowser.com/Codes/Details/308775002 +xref: TAO:0005006 +xref: VHOG:0000148 +xref: XAO:0000343 +xref: ZFA:0005006 +is_a: UBERON:0004363 ! pharyngeal arch artery +intersection_of: UBERON:0004363 ! pharyngeal arch artery +intersection_of: part_of UBERON:0003066 ! pharyngeal arch 2 +relationship: contributes_to_morphology_of UBERON:0003066 ! pharyngeal arch 2 +relationship: part_of UBERON:0003066 ! pharyngeal arch 2 + +[Term] +id: UBERON:0003120 +name: pharyngeal arch artery 3 +alt_id: UBERON:0004352 +def: "The vessels formed within the third pair of branchial arches in embryogenesis" [MP:0006356] +subset: pheno_slim +subset: vertebrate_core +synonym: "3rd aortic arch artery" RELATED [EMAPA:16687] +synonym: "3rd arch artery" EXACT [EHDAA2:0000070] +synonym: "3rd branchial arch artery" RELATED [EMAPA:16687] +synonym: "3rd pharyngeal arch artery" RELATED [EMAPA:16687] +synonym: "AA3" EXACT [ZFA:0005007] +synonym: "aortic arch 3" EXACT [ZFA:0005007] +synonym: "carotid arch" EXACT [http://en.wikipedia.org/wiki/Aortic_arches#Arch_3] +synonym: "third aortic arch" EXACT [XAO:0000344] +synonym: "third branchial arch artery" EXACT [] +xref: AAO:0010419 +xref: Arch_3 +xref: EHDAA2:0000070 +xref: EMAPA:16687 +xref: http://www.snomedbrowser.com/Codes/Details/308776001 +xref: TAO:0005007 +xref: VHOG:0000147 +xref: XAO:0000344 +xref: ZFA:0005007 +is_a: UBERON:0004363 ! pharyngeal arch artery +intersection_of: UBERON:0004363 ! pharyngeal arch artery +intersection_of: part_of UBERON:0003114 ! pharyngeal arch 3 +relationship: contributes_to_morphology_of UBERON:0003114 ! pharyngeal arch 3 +relationship: part_of UBERON:0003114 ! pharyngeal arch 3 + +[Term] +id: UBERON:0003121 +name: pharyngeal arch artery 4 +alt_id: UBERON:0004350 +def: "The vessels formed within the fourth pair of branchial arches in embryogenesis" [MP:0006354] +comment: proximal right subclavian +subset: pheno_slim +subset: vertebrate_core +synonym: "4th aortic arch artery" RELATED [EMAPA:17004] +synonym: "4th arch artery" EXACT [EHDAA2:0000087] +synonym: "4th branchial arch artery" RELATED [EMAPA:17004] +synonym: "4th pharyngeal arch artery" RELATED [EMAPA:17004] +synonym: "AA4" EXACT [ZFA:0005008] +synonym: "aortic arch 4" EXACT [ZFA:0005008] +synonym: "fourth aortic arch" EXACT [XAO:0000355] +synonym: "fourth branchial arch artery" EXACT [] +synonym: "systemic arch" RELATED [ISBN:0073040584, XAO:0000355] +xref: AAO:0010420 +xref: Arch_4 +xref: EHDAA2:0000087 +xref: EMAPA:17004 +xref: http://www.snomedbrowser.com/Codes/Details/308777005 +xref: TAO:0005008 +xref: XAO:0000355 +xref: ZFA:0005008 +is_a: UBERON:0004363 ! pharyngeal arch artery +intersection_of: UBERON:0004363 ! pharyngeal arch artery +intersection_of: part_of UBERON:0003115 ! pharyngeal arch 4 +relationship: part_of UBERON:0003115 ! pharyngeal arch 4 + +[Term] +id: UBERON:0003122 +name: pharyngeal arch artery 5 +def: "The vessels formed within the fifth pair of pharyngeal arches in embryogenesis." [http://orcid.org/0000-0002-6601-2165] +subset: vertebrate_core +synonym: "AA5" EXACT [ZFA:0005009] +synonym: "aortic arch 5" EXACT [ZFA:0005009] +synonym: "fifth aortic arch" EXACT [XAO:0000352] +xref: AAO:0010421 +xref: Arch_5 +xref: http://www.snomedbrowser.com/Codes/Details/308778000 +xref: TAO:0005009 +xref: VHOG:0000145 +xref: XAO:0000352 +xref: ZFA:0005009 +is_a: UBERON:0004363 ! pharyngeal arch artery +intersection_of: UBERON:0004363 ! pharyngeal arch artery +intersection_of: part_of UBERON:0003116 ! pharyngeal arch 5 +relationship: part_of UBERON:0003116 ! pharyngeal arch 5 + +[Term] +id: UBERON:0003123 +name: pharyngeal arch artery 6 +alt_id: UBERON:0004351 +def: "The vessels formed within the sixth pair of branchial arches in embryogenesis" [MP:0006355] +subset: pheno_slim +subset: vertebrate_core +synonym: "6th aortic arch artery" RELATED [EMAPA:17005] +synonym: "6th arch artery" EXACT [EMAPA:17005] +synonym: "6th branchial arch artery" RELATED [EMAPA:17005] +synonym: "6th pharyngeal arch artery" RELATED [EMAPA:17005] +synonym: "AA6" EXACT [ZFA:0005016] +synonym: "aortic arch 6" EXACT [ZFA:0005016] +synonym: "pulmonary arch" RELATED [ISBN:0073040584] +synonym: "sixth aortic arch" EXACT [XAO:0000353] +synonym: "sixth branchial arch artery" EXACT [] +xref: AAO:0010422 +xref: Arch_6 +xref: EHDAA2:0000102 +xref: EMAPA:17005 +xref: http://www.snomedbrowser.com/Codes/Details/308779008 +xref: TAO:0005016 +xref: VHOG:0000144 +xref: XAO:0000353 +xref: ZFA:0005016 +is_a: UBERON:0004363 ! pharyngeal arch artery +intersection_of: UBERON:0004363 ! pharyngeal arch artery +intersection_of: part_of UBERON:0003117 ! pharyngeal arch 6 +relationship: part_of UBERON:0003117 ! pharyngeal arch 6 + +[Term] +id: UBERON:0003124 +name: chorion membrane +def: "the outermost extraembryonic membrane" [MESH:A10.615.284.473, MP:0002836] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "chorion" EXACT [] +synonym: "chorion (vertebrates)" EXACT [] +synonym: "chorion frondosum" RELATED [http://en.wikipedia.org/wiki/Chorion] +synonym: "chorionic sac" RELATED [http://en.wikipedia.org/wiki/Chorion] +synonym: "embryonic chorion" EXACT [] +synonym: "fetal chorion" EXACT [] +synonym: "uterine chorion" EXACT [http://orcid.org/0000-0002-6601-2165, ZFIN:curator] +xref: BTO:0000252 +xref: CALOHA:TS-0144 +xref: EFO:0002780 +xref: EHDAA2:0000245 +xref: EHDAA:150 +xref: EMAPA:16112 +xref: EV:0100121 +xref: FMA:80224 +xref: GAID:1299 +xref: http://en.wikipedia.org/wiki/Chorion +xref: http://linkedlifedata.com/resource/umls/id/C0008503 +xref: http://linkedlifedata.com/resource/umls/id/C1516505 +xref: MESH:A16.254.403.473 +xref: NCIT:C34122 +xref: NCIT:C34124 +xref: UMLS:C0008503 {source="ncithesaurus:Chorion"} +xref: UMLS:C1516505 {source="ncithesaurus:Chorionic_Sac"} +xref: VHOG:0000200 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005631 ! extraembryonic membrane +relationship: adjacent_to UBERON:0000922 ! embryo +relationship: develops_from UBERON:0005971 {source="ISBN:0073040584"} ! amniotic fold +relationship: has_part UBERON:0003265 ! chorionic mesenchyme +relationship: has_part UBERON:0003374 ! chorionic ectoderm + +[Term] +id: UBERON:0003125 +name: vitelline membrane +def: "A structure directly adjacent to the outer surface of the plasma membrane of an ovum. It is composed mostly of protein fibers, with protein receptors needed for sperm binding, binding to sperm plasma membrane receptors. The species-specificity between these receptors contributes to prevention of breeding between different species [Wikipedia]. A protective layer around the egg[FBbt]." [http://en.wikipedia.org/wiki/Vitelline_membrane] +subset: dubious_grouping +synonym: "m. vitellina" RELATED LATIN [http://en.wikipedia.org/wiki/Vitelline_membrane] +synonym: "yolk sac membrane" RELATED [BTO:0001450] +synonym: "zona pellucida" RELATED [] +synonym: "zona pellucida - vitelline membrane" BROAD [VHOG:0000720] +xref: AAO:0010332 +xref: BTO:0001450 +xref: FBbt:00000042 +xref: GAID:1318 +xref: MESH:A16.631.886 +xref: VHOG:0000720 +xref: Vitelline:membrane +xref: XAO:0000030 +is_a: UBERON:0005764 ! acellular membrane + +[Term] +id: UBERON:0003126 +name: trachea +def: "The trachea is the portion of the airway that attaches to the bronchi as it branches [GO:dph]." [GO:0060438, http://en.wikipedia.org/wiki/Vertebrate_trachea] +subset: efo_slim +subset: major_organ +subset: pheno_slim +subset: uberon_slim +synonym: "cartilaginous trachea" EXACT [] +synonym: "tracheal tubule" RELATED [BTO:0001388] +synonym: "vertebrate trachea" EXACT SENSU [] +synonym: "windpipe" EXACT [] +xref: AAO:0010140 +xref: BTO:0001388 +xref: CALOHA:TS-1060 +xref: EFO:0000935 +xref: EHDAA2:0002066 +xref: EHDAA:3078 +xref: EMAPA:16853 +xref: EV:0100040 +xref: FMA:7394 +xref: GAID:361 +xref: http://linkedlifedata.com/resource/umls/id/C0040578 +xref: http://www.snomedbrowser.com/Codes/Details/181213009 +xref: MA:0000441 +xref: MAT:0000137 +xref: MESH:D014132 +xref: MIAA:0000137 +xref: NCIT:C12428 +xref: OpenCyc:Mx4rvViOX5wpEbGdrcN5Y29ycA +xref: UMLS:C0040578 {source="ncithesaurus:Trachea"} +xref: Vertebrate:trachea +xref: VHOG:0000371 +xref: XAO:0000118 +is_a: UBERON:0000117 ! respiratory tube +relationship: contributes_to_morphology_of UBERON:0001004 ! respiratory system +relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primordium +relationship: located_in UBERON:0002224 ! thoracic cavity +relationship: part_of UBERON:0007196 ! tracheobronchial tree + +[Term] +id: UBERON:0003127 +name: open tracheal system trachea +def: "A respiratory airway that is part of an open tracheal system." [http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "invertebrate trachea" EXACT [] +synonym: "trachea" BROAD SENSU [FBbt:00005043] +xref: FBbt:00005043 +xref: Invertebrate:trachea +xref: SPD:0000434 +xref: TADS:0000315 +is_a: UBERON:0001005 ! respiratory airway +relationship: has_part UBERON:0003914 ! epithelial tube +relationship: part_of UBERON:0005155 ! open tracheal system + +[Term] +id: UBERON:0003128 +name: cranium +def: "Upper portion of the skull that excludes the mandible (when present in the organism)." [http://en.wikipedia.org/wiki/Cranium_(anatomy), http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "bones of cranium" EXACT [FMA:71325] +synonym: "calvarium" RELATED [BTO:0001328] +synonym: "epicranial plate" RELATED [] +synonym: "ossa cranii" EXACT LATIN [FMA:71325, FMA:TA] +synonym: "set of bones of cranium" EXACT [FMA:71325] +synonym: "skeletal system of head" RELATED [] +synonym: "skull minus mandible" EXACT [] +synonym: "upper part of skull" EXACT [] +xref: BTO:0001328 +xref: Cranium:(anatomy) +xref: EFO:0000831 +xref: EHDAA:6029 +xref: EMAPA:17680 +xref: FMA:71325 +xref: http://www.snomedbrowser.com/Codes/Details/181889008 +xref: MA:0000316 +xref: MAT:0000340 +xref: MIAA:0000340 +xref: OpenCyc:Mx4rvVlEyJwpEbGdrcN5Y29ycA +xref: VHOG:0000334 +is_a: UBERON:0000075 {source="FMA-inferred"} ! subdivision of skeletal system +relationship: part_of UBERON:0003129 ! skull + +[Term] +id: UBERON:0003129 +name: skull +def: "Anatomical structure that is part of the head consisting entirely of cranium and mandible[WP]." [http://en.wikipedia.org/wiki/Skull, http://sourceforge.net/tracker/?func=detail&aid=2962656&group_id=76834&atid=1205376, http://www.ncbi.nlm.nih.gov/pubmed/11523816] +subset: pheno_slim +subset: uberon_slim +synonym: "cranial skeleton" RELATED [] +synonym: "skeletal system of head" RELATED [] +xref: BTO:0001295 +xref: CALOHA:TS-2344 +xref: EHDAA2:0000325 +xref: EMAPA:17680 +xref: FMA:46565 +xref: GAID:82 +xref: galen:Skull +xref: http://en.wikipedia.org/wiki/Skull +xref: http://linkedlifedata.com/resource/umls/id/C0037303 +xref: http://www.snomedbrowser.com/Codes/Details/110530005 +xref: MESH:D012886 +xref: NCIT:C12789 +xref: OpenCyc:Mx4rvVjOsZwpEbGdrcN5Y29ycA +xref: UMLS:C0037303 {source="ncithesaurus:Skull"} +xref: WikipediaCategory:Skull +is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: has_part UBERON:0003128 ! cranium +relationship: has_part UBERON:0003278 ! skeleton of lower jaw +relationship: part_of UBERON:0000033 ! head +relationship: part_of UBERON:0010323 ! cranial skeletal system +relationship: present_in_taxon NCBITaxon:7762 + +[Term] +id: UBERON:0003130 +name: arthropod sternum +def: "ventral portion of a segment of an arthropod thorax or abdomen. In insects, the sterna are usually single, large sclerites, and external. However, they can sometimes be divided in two or more, in which case the subunits are called sternites, and may also be modified on the terminal abdominal segments so as to form part of the functional genitalia, in which case they are frequently reduced in size and development, and may become internalized and/or membranous." [http://en.wikipedia.org/wiki/Sternum_(arthropod)] +synonym: "sternum" BROAD [] +xref: FBbt:00004557 +xref: HAO:0000956 +xref: Sternum:(arthropod) +is_a: UBERON:0010000 ! multicellular anatomical structure + +[Term] +id: UBERON:0003131 +name: arthropod tibia +def: "A section of the arthropod leg." [http://en.wikipedia.org/wiki/Arthropod_leg] +xref: Arthropod:leg +xref: FBbt:00004642 +xref: HAO:0001017 +xref: TADS:0000281 +is_a: UBERON:0000475 ! organism subdivision +relationship: part_of UBERON:0005895 ! insect leg + +[Term] +id: UBERON:0003132 +name: obsolete arthropod hypopharynx +is_obsolete: true +consider: FBbt:00005751 +consider: HAO:0000409 +consider: TGMA:0000090 + +[Term] +id: UBERON:0003133 +name: reproductive organ +def: "An organ involved in reproduction" [UBERON:xp] +subset: functional_classification +subset: organ_slim +subset: pheno_slim +synonym: "genital organ" EXACT [] +synonym: "genitalia" RELATED PLURAL [] +synonym: "reproductive system organ" EXACT [] +synonym: "sex organ" EXACT [] +xref: EMAPA:17381 +xref: EMAPA:37731 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C0017420 +xref: http://www.snomedbrowser.com/Codes/Details/128181006 +xref: MA:0001752 +xref: MESH:D005835 +xref: NCIT:C25177 +xref: OpenCyc:Mx4rwO39aJwpEbGdrcN5Y29ycA +xref: TGMA:0000591 +xref: UMLS:C0017420 {source="ncithesaurus:Genitalia"} +xref: WBbt:0008422 +is_a: UBERON:0000062 ! organ +is_a: UBERON:0005156 ! reproductive structure + +[Term] +id: UBERON:0003134 +name: female reproductive organ +def: "A female organ involved in reproduction" [UBERON:xp] +subset: organ_slim +subset: pheno_slim +synonym: "female organism reproductive organ" EXACT [OBOL:automatic] +synonym: "female organism reproductive structure" EXACT [OBOL:automatic] +synonym: "female organism reproductive system organ" EXACT [OBOL:automatic] +synonym: "female organism sex organ" EXACT [OBOL:automatic] +synonym: "female reproductive gland/organ" EXACT [MA:0000544] +synonym: "female reproductive system organ" EXACT [] +synonym: "female sex organ" EXACT [] +synonym: "reproductive organ of female organism" EXACT [OBOL:automatic] +synonym: "reproductive structure of female organism" EXACT [OBOL:automatic] +synonym: "reproductive system organ of female organism" EXACT [OBOL:automatic] +synonym: "sex organ of female organism" EXACT [OBOL:automatic] +xref: EMAPA:28540 +xref: MA:0000544 +is_a: UBERON:0003133 ! reproductive organ +intersection_of: UBERON:0003133 ! reproductive organ +intersection_of: part_of UBERON:0003100 ! female organism +relationship: part_of UBERON:0000474 ! female reproductive system + +[Term] +id: UBERON:0003135 +name: male reproductive organ +def: "A male organ involved in reproduction" [UBERON:xp] +subset: organ_slim +subset: pheno_slim +synonym: "male organism reproductive organ" EXACT [OBOL:automatic] +synonym: "male organism reproductive structure" EXACT [OBOL:automatic] +synonym: "male organism reproductive system organ" EXACT [OBOL:automatic] +synonym: "male organism sex organ" EXACT [OBOL:automatic] +synonym: "male reproductive gland/organ" EXACT [MA:0000545] +synonym: "male reproductive system organ" EXACT [] +synonym: "male sex organ" EXACT [] +synonym: "reproductive organ of male organism" EXACT [OBOL:automatic] +synonym: "reproductive structure of male organism" EXACT [OBOL:automatic] +synonym: "reproductive system organ of male organism" EXACT [OBOL:automatic] +synonym: "sex organ of male organism" EXACT [OBOL:automatic] +xref: MA:0000545 +is_a: UBERON:0003133 ! reproductive organ +intersection_of: UBERON:0003133 ! reproductive organ +intersection_of: part_of UBERON:0003101 ! male organism +relationship: part_of UBERON:0000079 ! male reproductive system + +[Term] +id: UBERON:0003136 +name: obsolete tagma +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00000002 +consider: HAO:0000988 + +[Term] +id: UBERON:0003137 +name: obsolete antennal segment +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00000009 +consider: HAO:0000104 + +[Term] +id: UBERON:0003138 +name: obsolete thoracic segment +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00000016 +consider: HAO:0001013 + +[Term] +id: UBERON:0003139 +name: obsolete larval tagma +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00001728 +consider: HAO:0000462 + +[Term] +id: UBERON:0003140 +name: obsolete larval thorax +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00001741 +consider: HAO:0000463 + +[Term] +id: UBERON:0003141 +name: obsolete larval abdomen +is_obsolete: true +consider: FBbt:00001746 +consider: HAO:0000460 + +[Term] +id: UBERON:0003142 +name: prepupa +def: "An organism at the prepupal stage. The prepupal stage is a life stage interposed between the larval and the pupal stages in insects that undergo a complete metamorphosis. The start of the pre-pupal stage is marked by pupariation, and the end is marked by pupation" [GO:0035210] +xref: BTO:0001110 +xref: FBbt:00002952 +xref: HAO:0000812 +is_a: UBERON:0000468 ! multicellular organism +relationship: develops_from UBERON:0002548 ! larva +relationship: immediate_transformation_of UBERON:0002548 ! larva + +[Term] +id: UBERON:0003143 +name: pupa +def: "An organism at the pupal stage. A life cycle stage of holometabolous insects in which the organism is a pupa and starts with the larval-pupal apolysis and ends with pupal-adult apolysis." [http://en.wikipedia.org/wiki/Pupa, https://github.com/obophenotype/uberon/issues/562] +subset: efo_slim +synonym: "aurelia" NARROW [http://en.wikipedia.org/wiki/Pupa, NCBITaxon:37572] +synonym: "chrysalides" NARROW PLURAL [http://en.wikipedia.org/wiki/Pupa, NCBITaxon:37572] +synonym: "chrysalis" NARROW [http://en.wikipedia.org/wiki/Pupa, NCBITaxon:37572] +synonym: "pupae" RELATED PLURAL [] +xref: BTO:0001143 +xref: EFO:0002684 +xref: FBbt:00002953 +xref: HAO:0000886 +xref: http://en.wikipedia.org/wiki/Pupa +xref: OpenCyc:Mx4rwQCBr5wpEbGdrcN5Y29ycA +is_a: UBERON:0000468 ! multicellular organism +intersection_of: UBERON:0000468 ! multicellular organism +intersection_of: existence_starts_and_ends_during UBERON:0000070 ! pupal stage +property_value: dc-contributor https://github.com/ANiknejad +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/dosumis +property_value: dc-contributor https://github.com/fbastian +property_value: dc-contributor https://github.com/mmc46 +relationship: existence_starts_and_ends_during UBERON:0000070 ! pupal stage + +[Term] +id: UBERON:0003144 +name: obsolete adult tagma +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00003005 +consider: HAO:0000089 + +[Term] +id: UBERON:0003145 +name: obsolete adult arthropod thorax +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00003018 +consider: HAO:0000090 + +[Term] +id: UBERON:0003146 +name: obsolete adult arthropod abdomen +is_obsolete: true +consider: FBbt:00003023 +consider: HAO:0000088 + +[Term] +id: UBERON:0003147 +name: obsolete peritreme +def: "That part of the integument of an insect which surrounds the spiracles." [http://www.answers.com/topic/peritreme] +comment: arthropod specific groupings belong in separate ontology. term also used for edge of the aperture of a univalve shell +synonym: "rim" RELATED [FBbt:00003121] +is_obsolete: true +consider: FBbt:00003121 +consider: HAO:0000712 + +[Term] +id: UBERON:0003148 +name: obsolete sclerite +def: "hardened portions of arthropod exoskeletons." [http://en.wikipedia.org/wiki/Sclerite] +comment: arthropod specific groupings belong in separate ontology +synonym: "plate" RELATED [FBbt:00004475] +xref: http://en.wikipedia.org/wiki/Sclerite +is_obsolete: true +consider: FBbt:00004475 +consider: HAO:0000909 + +[Term] +id: UBERON:0003149 +name: obsolete tergite +comment: arthropod specific groupings belong in separate ontology +synonym: "abdominal tergite" EXACT [FBbt:00004476] +is_obsolete: true +consider: FBbt:00004476 +consider: HAO:0001005 + +[Term] +id: UBERON:0003150 +name: obsolete sternite +comment: arthropod specific groupings belong in separate ontology +synonym: "abdominal sternite" EXACT [FBbt:00004477] +is_obsolete: true +consider: FBbt:00004477 +consider: HAO:0000955 + +[Term] +id: UBERON:0003151 +name: obsolete foramen +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004478 +consider: HAO:0000345 + +[Term] +id: UBERON:0003152 +name: obsolete phragma +def: "The lamella that serves as the site of attachment of the longitudinal flight muscle [HAO]." [HAO:0000716] +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004480 +consider: HAO:0000716 + +[Term] +id: UBERON:0003153 +name: head capsule +comment: will be ceded to arthropod anatomy ontology +subset: efo_slim +synonym: "Kopfkapsel@de" RELATED [BTO:0004711] +xref: BTO:0004711 +xref: EFO:0001927 +xref: FBbt:00004482 +xref: HAO:0000398 +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0003154 +name: obsolete gena +comment: arthropod specific groupings belong in separate ontology +synonym: "cheek" RELATED [FBbt:00004491] +is_obsolete: true +consider: FBbt:00004491 +consider: HAO:0000371 + +[Term] +id: UBERON:0003155 +name: arthropod occiput +comment: arthropod specific groupings belong in separate ontology, but this is retained for disambiguation purposes +synonym: "occiput" RELATED SENSU [FBbt:00004492] +xref: FBbt:00004492 +xref: HAO:0000658 +xref: TGMA:0000041 +is_a: UBERON:0006056 ! posterior surface of head +disjoint_from: UBERON:0006054 ! surface of occiput + +[Term] +id: UBERON:0003156 +name: obsolete postocciput +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004494 +consider: HAO:0000790 + +[Term] +id: UBERON:0003157 +name: obsolete postgena +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004496 +consider: HAO:0000776 + +[Term] +id: UBERON:0003158 +name: obsolete tentorial pit +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004501 +consider: HAO:0000999 + +[Term] +id: UBERON:0003159 +name: obsolete anterior tentorial pit +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004502 +consider: HAO:0000126 + +[Term] +id: UBERON:0003160 +name: obsolete posterior tentorial pit +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004503 +consider: HAO:0000768 + +[Term] +id: UBERON:0003161 +name: dorsal ocellus +def: "A simple visual organ of insects[GO]. Two ocelli appear on the vertical and one on the frontal plate[FBbt]. The multi-tissue structure that is located on the top of the head, composed of the corneal lens, pigment cell, rhabdoms and synaptic plexus[HAO]. Two evolutionary distinct ocellus types exist [2]: dorsal ocelli (or simply 'ocelli'), found in most insects, and lateral ocelli (or stemmata), which are found in the larvae of some insect orders. They are structurally and functionally very different. Simple eyes of other animals, e.g. cnidarians may also be referred to as 'ocelli', but again the structure and anatomy of these eyes is quite distinct from those of the dorsal ocelli of insects[Wikipedia]." [FBbt:00004505, GO:0008056, HAO:0000661, http://en.wikipedia.org/wiki/Ocellus#Ocelli] +synonym: "dorsal ocelli" RELATED PLURAL [] +synonym: "ocelli" RELATED PLURAL [] +synonym: "ocellus" EXACT [] +xref: BTO:0001758 +xref: FBbt:00004505 +xref: HAO:0000661 +xref: Ocelli +is_a: UBERON:0000963 ! head sensillum + +[Term] +id: UBERON:0003162 +name: lateral ocellus +def: "The ocellus that is paired[HAO]. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata)[Wikipedia]." [HAO:0000481, http://en.wikipedia.org/wiki/Ocellus#Ocelli] +xref: FBbt:00004506 +xref: HAO:0000481 +xref: Ocelli +is_a: UBERON:0003161 ! dorsal ocellus +disjoint_from: UBERON:0003211 {source="lexical"} ! median eye + +[Term] +id: UBERON:0003163 +name: obsolete mouthpart +is_obsolete: true +consider: FBbt:00004520 +consider: HAO:0000639 + +[Term] +id: UBERON:0003164 +name: obsolete clypeus +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004521 +consider: HAO:0000212 + +[Term] +id: UBERON:0003165 +name: obsolete cibarium +comment: arthropod specific groupings belong in separate ontology +synonym: "atrium" RELATED [FBbt:00004526] +is_obsolete: true +consider: FBbt:00004526 +consider: HAO:0000201 + +[Term] +id: UBERON:0003166 +name: obsolete prementum +comment: arthropod specific groupings belong in separate ontology +synonym: "theca" RELATED [FBbt:00004534] +is_obsolete: true +consider: FBbt:00004534 +consider: HAO:0000804 + +[Term] +id: UBERON:0003167 +name: obsolete lacinia +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004536 +consider: HAO:0000457 + +[Term] +id: UBERON:0003168 +name: obsolete mentum +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004544 +consider: HAO:0000534 + +[Term] +id: UBERON:0003169 +name: obsolete cervical sclerite +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004548 +consider: HAO:0000195 + +[Term] +id: UBERON:0003170 +name: obsolete tergum +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004552 +consider: HAO:0001006 + +[Term] +id: UBERON:0003171 +name: obsolete episternum +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004554 +consider: HAO:0000303 + +[Term] +id: UBERON:0003172 +name: obsolete epimeron +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004556 +consider: HAO:0000299 + +[Term] +id: UBERON:0003173 +name: obsolete pronotum +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004561 +consider: HAO:0000853 + +[Term] +id: UBERON:0003174 +name: obsolete furcasternum +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004570 +consider: HAO:0000367 + +[Term] +id: UBERON:0003175 +name: obsolete prescutum +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004582 +consider: HAO:0000815 + +[Term] +id: UBERON:0003176 +name: obsolete anterior notal wing process +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004585 +consider: HAO:0000120 + +[Term] +id: UBERON:0003177 +name: obsolete posterior notal wing process +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004586 +consider: HAO:0000758 + +[Term] +id: UBERON:0003178 +name: obsolete postnotum +comment: arthropod specific groupings belong in separate ontology +synonym: "postscutellum" RELATED [FBbt:00004588] +is_obsolete: true +consider: FBbt:00004588 +consider: HAO:0000786 + +[Term] +id: UBERON:0003179 +name: obsolete pleural wing process +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004595 +consider: HAO:0000726 + +[Term] +id: UBERON:0003180 +name: obsolete anepisternum +comment: arthropod specific groupings belong in separate ontology +synonym: "mesopleurite" RELATED [FBbt:00004597] +is_obsolete: true +consider: FBbt:00004597 +consider: HAO:0000094 + +[Term] +id: UBERON:0003181 +name: obsolete scutoscutellar suture +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004601 +consider: HAO:0000920 + +[Term] +id: UBERON:0003182 +name: obsolete pleural suture +is_obsolete: true +consider: FBbt:00004603 +consider: HAO:0000725 + +[Term] +id: UBERON:0003183 +name: obsolete notopleural suture +is_obsolete: true +consider: FBbt:00004604 +consider: HAO:0000649 + +[Term] +id: UBERON:0003184 +name: obsolete mesofurca +comment: arthropod specific groupings belong in separate ontology +synonym: "mesothoracic sternal apophysis" RELATED [FBbt:00004619] +is_obsolete: true +consider: FBbt:00004619 +consider: HAO:0000547 + +[Term] +id: UBERON:0003185 +name: obsolete metafurca +comment: arthropod specific groupings belong in separate ontology +synonym: "metathoracic sternal apophysis" RELATED [FBbt:00004638] +is_obsolete: true +consider: FBbt:00004638 +consider: HAO:0000592 + +[Term] +id: UBERON:0003186 +name: obsolete coxa +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004641 +consider: HAO:0000228 + +[Term] +id: UBERON:0003187 +name: obsolete pretarsus +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004653 +consider: HAO:0000820 + +[Term] +id: UBERON:0003188 +name: obsolete auxilia +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004654 +consider: HAO:0000153 + +[Term] +id: UBERON:0003189 +name: obsolete unguitractor plate +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004658 +consider: HAO:0001043 + +[Term] +id: UBERON:0003190 +name: obsolete empodium +is_obsolete: true +consider: FBbt:00004659 +consider: HAO:0000288 + +[Term] +id: UBERON:0003191 +name: obsolete tegula +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004730 +consider: HAO:0000993 + +[Term] +id: UBERON:0003192 +name: obsolete axillary sclerite +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004737 +consider: HAO:0000159 + +[Term] +id: UBERON:0003193 +name: obsolete axillary cord +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004744 +consider: HAO:0000157 + +[Term] +id: UBERON:0003194 +name: imaginal disc-derived wing vein +xref: FBbt:00004751 +xref: HAO:0001095 +is_a: UBERON:0000476 ! acellular anatomical structure +relationship: part_of UBERON:0000984 ! imaginal disc-derived wing + +[Term] +id: UBERON:0003195 +name: obsolete crossvein +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004765 +consider: HAO:0000236 + +[Term] +id: UBERON:0003196 +name: obsolete wing cell +comment: arthropod specific groupings belong in separate ontology +synonym: "intervein" RELATED [FBbt:00004769] +is_obsolete: true +consider: FBbt:00004769 +consider: HAO:0001091 + +[Term] +id: UBERON:0003197 +name: obsolete costal cell +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004770 +consider: HAO:0000226 + +[Term] +id: UBERON:0003198 +name: obsolete aedeagus +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00004850 +consider: HAO:0000091 + +[Term] +id: UBERON:0003199 +name: egg chamber +comment: Candidate for obsoletion +synonym: "follicle" RELATED [FBbt:00004894] +synonym: "germarium derived egg chamber" EXACT [FBbt:00004894] +xref: FBbt:00004894 +xref: HAO:0000287 +xref: http://linkedlifedata.com/resource/umls/id/C1571705 +xref: NCIT:C61362 +xref: UMLS:C1571705 {source="ncithesaurus:Follicle"} +is_a: UBERON:0000464 ! anatomical space + +[Term] +id: UBERON:0003200 +name: obsolete pedicel +is_obsolete: true +consider: FBbt:00004920 +consider: HAO:0000706 + +[Term] +id: UBERON:0003201 +name: exocuticle +def: "The outer layer of the procuticle of certain crustaceans and arthropods, which contains cuticulin, chitin, and phenolic substances that are oxidized to produce the dark pigment of the cuticle;nThe hard and usually darkened layer of the cuticle lying between the endocuticle and epicuticle." [BTO:0001602] +xref: BTO:0001602 +xref: FBbt:00004973 +xref: HAO:0000311 +is_a: UBERON:0000476 ! acellular anatomical structure + +[Term] +id: UBERON:0003202 +name: endocuticle +def: "The inner layer of the procuticle in certain crustaceans and arthropods, which is almost entirely composed of protein and chitin." [BTO:0001603] +xref: BTO:0001603 +xref: FBbt:00004974 +xref: HAO:0000290 +is_a: UBERON:0000476 ! acellular anatomical structure + +[Term] +id: UBERON:0003203 +name: obsolete apodeme +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00005091 +consider: HAO:0000142 + +[Term] +id: UBERON:0003204 +name: obsolete epipharynx +comment: arthropod specific groupings belong in separate ontology +is_obsolete: true +consider: FBbt:00005750 +consider: HAO:0000301 + +[Term] +id: UBERON:0003205 +name: obsolete articulation +comment: incorrect grouping +is_obsolete: true +consider: FBbt:00005811 +consider: HAO:0000151 +consider: ncithesaurus:Articulation + +[Term] +id: UBERON:0003206 +name: obsolete apophysis +comment: incorrect grouping +is_obsolete: true +consider: FBbt:00005813 +consider: FMA:75428 +consider: HAO:0000143 + +[Term] +id: UBERON:0003207 +name: obsolete arthropod appendage segment +comment: Uberon now includes a generic appendicular segment class. Note the HAO class for appendage segment has been obsoleted +xref: HAO:0000145 +is_obsolete: true +consider: UBERON:0010758 + +[Term] +id: UBERON:0003209 +name: blood nerve barrier +def: "barrier between the perineurium of peripheral nerves and the vascular endothelium of endoneurial capillaries. The perineurium acts as a diffusion barrier, but ion permeability at the blood-nerve barrier is still higher than at the blood-brain barrier[GO]." [GO:0008065, http://en.wikipedia.org/wiki/Blood-nerve_barrier] +synonym: "blood-nerve barrier" EXACT [] +xref: Blood-nerve:barrier +is_a: UBERON:0000119 ! cell layer +relationship: adjacent_to UBERON:0000179 ! haemolymphatic fluid +relationship: adjacent_to UBERON:0001021 ! nerve +relationship: part_of UBERON:0001016 ! nervous system + +[Term] +id: UBERON:0003210 +name: blood-cerebrospinal fluid barrier +def: "barrier in the choroid plexus located in the lateral, third, and fourth brain ventricles that controls the entrance of substances into the cerebrospinal fluid from the blood[MP]." [MP:0006088] +subset: pheno_slim +synonym: "blood-CSF barrier" EXACT [MP:0006088] +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: adjacent_to UBERON:0000178 ! blood +relationship: adjacent_to UBERON:0001359 ! cerebrospinal fluid +relationship: part_of UBERON:0001886 ! choroid plexus + +[Term] +id: UBERON:0003211 +name: median eye +def: "A median eye is an eye that is connected to a paired or unpaired median anterior neuropil of the syncerebrum by one or several median eye nerves." [http://www.ncbi.nlm.nih.gov/pubmed/21062451] +synonym: "frontal ocellus" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/21062451] +synonym: "medial ocellus" EXACT [FBbt:00004507] +synonym: "median ocellus" EXACT [HAO:0000526] +xref: FBbt:00004507 +xref: HAO:0000526 +xref: Ocelli +is_a: UBERON:0000970 ! eye + +[Term] +id: UBERON:0003212 +name: gustatory organ +def: "Any sense organ that functions in (some) detection of chemical stimulus involved in sensory perception of taste (GO:0050912)." [FBC:auto_generated_definition] +synonym: "gustatory organ system organ" EXACT [OBOL:automatic] +synonym: "gustatory system organ" EXACT [OBOL:automatic] +synonym: "organ of gustatory organ system" EXACT [OBOL:automatic] +synonym: "organ of gustatory system" EXACT [OBOL:automatic] +synonym: "organ of taste system" EXACT [OBOL:automatic] +synonym: "taste organ" EXACT [] +synonym: "taste system organ" EXACT [OBOL:automatic] +xref: FBbt:00005159 +xref: FMA:77853 +is_a: UBERON:0000005 ! chemosensory organ +relationship: part_of UBERON:0001033 ! gustatory system + +[Term] +id: UBERON:0003214 +name: mammary gland alveolus +def: "A sac-like structure that is found in the mature gland[GO]." [GO:0060749] +subset: pheno_slim +synonym: "alveolus of lactiferous gland" EXACT [OBOL:automatic] +synonym: "alveolus of lobe of breast" EXACT [OBOL:automatic] +synonym: "alveolus of lobe of mammary gland" EXACT [OBOL:automatic] +synonym: "alveolus of mammary gland" EXACT [OBOL:automatic] +synonym: "lactiferous alveolus" EXACT [] +synonym: "lactiferous gland alveolus" EXACT [] +synonym: "lobe of breast alveolus" EXACT [OBOL:automatic] +synonym: "lobe of mammary gland alveolus" EXACT [OBOL:automatic] +synonym: "mammary alveoli" RELATED PLURAL [] +synonym: "mammary alveolus" EXACT [] +xref: EMAPA:36566 +xref: FMA:73285 +xref: MA:0002760 +is_a: UBERON:0003215 ! alveolus +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0003215 ! alveolus +intersection_of: part_of UBERON:0001911 ! mammary gland +relationship: contributes_to_morphology_of UBERON:0001912 ! lobule of mammary gland +relationship: part_of UBERON:0001912 ! lobule of mammary gland + +[Term] +id: UBERON:0003215 +name: alveolus +def: "organ part that has the form of a hollow cavity[WP]." [http://en.wikipedia.org/wiki/Alveolus] +subset: efo_slim +xref: EFO:0002513 +xref: EV:0100043 +xref: FMA:82493 +xref: http://en.wikipedia.org/wiki/Alveolus +xref: http://linkedlifedata.com/resource/umls/id/C0034051 +xref: NCIT:C12986 +xref: OpenCyc:Mx4rwN8NFZwpEbGdrcN5Y29ycA +xref: UMLS:C0034051 {source="ncithesaurus:Alveolus"} +is_a: UBERON:0000064 ! organ part + +[Term] +id: UBERON:0003216 +name: hard palate +def: "Anterior portion of the palate consisting of bone and mucous membranes[GO]. The hard palate is formed from bony processes of the maxilla, premaxilla and palatine[Kardong]." [GO:0060022, http://en.wikipedia.org/wiki/Hard_palate] +subset: pheno_slim +subset: uberon_slim +synonym: "hard palate" EXACT [] +synonym: "palatum durum" EXACT LATIN [http://en.wikipedia.org/wiki/Hard_palate] +xref: EMAPA:18952 +xref: FMA:55023 +xref: GAID:221 +xref: Hard:palate +xref: http://linkedlifedata.com/resource/umls/id/C0226901 +xref: http://www.snomedbrowser.com/Codes/Details/245778002 +xref: MA:0002477 +xref: MAT:0000161 +xref: MESH:D021362 +xref: MIAA:0000161 +xref: NCIT:C12230 +xref: UMLS:C0226901 {source="ncithesaurus:Hard_Palate"} +is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster +relationship: part_of UBERON:0001716 {notes="check this", source="EMAPA"} ! secondary palate + +[Term] +id: UBERON:0003217 +name: neural lobe of neurohypophysis +def: "The posterior pituitary (or neurohypophysis) comprises the posterior lobe of the pituitary gland and is part of the endocrine system. Despite its name, the posterior pituitary gland is not a gland, per se; rather, it is largely a collection of axonal projections from the hypothalamus that terminate behind the anterior pituitary gland. [WP,unvetted]." [http://en.wikipedia.org/wiki/Neurohypophysis#cite_note-1] +subset: pheno_slim +subset: uberon_slim +synonym: "caudal lobe" RELATED [BTO:0000561] +synonym: "eminentia medialis (Shantha)" RELATED LATIN [NeuroNames:402] +synonym: "eminentia mediana" RELATED LATIN [NeuroNames:402] +synonym: "eminentia postinfundibularis" RELATED LATIN [NeuroNames:402] +synonym: "lobe caudalis cerebelli" RELATED [BTO:0000561] +synonym: "lobus nervosus (Neurohypophysis)" EXACT LATIN [FMA:74636, FMA:TA] +synonym: "medial eminence" RELATED [NeuroNames:402] +synonym: "middle lobe" RELATED [BTO:0000561] +synonym: "neural component of pituitary" RELATED [] +synonym: "pars nervosa" RELATED [MA:0000860] +synonym: "pars nervosa (hypophysis)" EXACT LATIN [FMA:74636, FMA:TA] +synonym: "pars nervosa (neurohypophysis)" EXACT LATIN [FMA:74636, FMA:TA] +synonym: "pars nervosa neurohypophysis" EXACT LATIN [FMA:74636, FMA:TA] +synonym: "pars nervosa of hypophysis" EXACT [] +synonym: "pars nervosa of neurohypophysis" EXACT [] +synonym: "pars nervosa of pituitary" EXACT [] +synonym: "pars nervosa of posterior lobe of pituitary gland" EXACT [] +synonym: "pars nervosa pituitary gland" EXACT [BIRNLEX:941] +synonym: "pars posterior" EXACT [MA:0000860] +synonym: "pars posterior of hypophysis" EXACT LATIN [FMA:74636, FMA:TA] +synonym: "PNHP" BROAD ABBREVIATION [BIRNLEX:941, NIFSTD:NeuroNames_abbrevSource] +synonym: "posterior lobe" BROAD [BTO:0000561] +synonym: "posterior lobe of neurohypophysis" EXACT [FMA:74636] +synonym: "posterior lobe-3" EXACT [] +xref: BAMS:PNHP +xref: BIRNLEX:941 +xref: BTO:0000561 +xref: cite_note-1 +xref: EHDAA2:0001418 +xref: EHDAA:7542 +xref: EMAPA:35595 +xref: FMA:74636 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=402 {source="BIRNLEX:941"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=402 +xref: http://linkedlifedata.com/resource/umls/id/C0447640 +xref: http://www.snomedbrowser.com/Codes/Details/424523008 +xref: MA:0000860 +xref: UMLS:C0447640 {source="BIRNLEX:941"} +xref: VHOG:0001180 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0006250 {source="MP-def"} ! infundibular recess of 3rd ventricle +relationship: part_of UBERON:0002198 ! neurohypophysis + +[Term] +id: UBERON:0003218 +name: ovary septum +def: "Septum that divides the ovary, the basal portion of a carpel or group of fused carpels, that encloses the ovule(s)[GO]." [GO:0080126] +is_a: UBERON:0003037 ! septum +intersection_of: UBERON:0003037 ! septum +intersection_of: part_of UBERON:0000992 ! ovary +relationship: part_of UBERON:0000992 ! ovary + +[Term] +id: UBERON:0003219 +name: shell septum +def: "Septum that divides the internal chambers (camerae) of the shell of a cephalopod, namely nautiloids or ammonoids." [GO:0080126, http://en.wikipedia.org/wiki/Septum_(marine_biology)] +comment: Cede to CEPH +xref: http://en.wikipedia.org/wiki/Septum_(marine_biology) +is_a: UBERON:0003037 ! septum +intersection_of: UBERON:0003037 ! septum +intersection_of: part_of UBERON:0006612 ! shell +relationship: part_of UBERON:0006612 ! shell + +[Term] +id: UBERON:0003220 +name: metanephric mesenchyme +def: "one of the two embryological structures that give rise to the kidney (the other is the ureteric bud). The metanephric blastema mostly develops into nephrons, but can also form parts of the collecting duct system.[WP]. Metanephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the metanephros[GO]" [GO:0072075, http://en.wikipedia.org/wiki/Metanephric_blastema] +comment: Genes: The positional specification of the metanephrogenic mesenchyme is negatively regulated by Foxc1 and Foxc2. Next the permanent kidney forming metanephrogenic mesenchyme is specified by Hox11 genes. The competence to respond to ureteric bud inducers is regulated by WT1. GDNF secretion restricted to posterior region by Robo2 and Sprouty1. The receptors for GDNF are synthesized in the nephric ducts and later in ureteric buds [ISBN:9780878932504 "Developmental Biology"] +subset: pheno_slim +synonym: "metanephric blastema" EXACT [http://en.wikipedia.org/wiki/Metanephric_blastema] +synonym: "metanephric mesoderm" EXACT [http://en.wikipedia.org/wiki/Metanephric_blastema] +synonym: "metanephrogenic mesenchyme" EXACT [EHDAA:5021] +synonym: "metanephros associated mesenchyme" EXACT [RETIRED_EHDAA2:0001139] +xref: EHDAA2:0004062 +xref: EHDAA:4041 +xref: EHDAA:5021 +xref: EHDAA:5915 +xref: EMAPA:17375 +xref: http://www.snomedbrowser.com/Codes/Details/361529008 +xref: Metanephric:blastema +xref: VHOG:0000540 +is_a: UBERON:0003918 ! kidney mesenchyme +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0006598 ! presumptive structure +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: has_potential_to_develop_into UBERON:0000081 ! metanephros +relationship: developmentally_induced_by UBERON:0000084 {source="ISBN:9780878932504"} ! ureteric bud +relationship: develops_from UBERON:0003074 ! mesonephric duct +relationship: has_potential_to_develop_into UBERON:0000081 ! metanephros + +[Term] +id: UBERON:0003221 +name: phalanx +def: "Endochondral bones that are often elongate and arranged in rows of articulating elements, and form the visible part of the digits." [http://en.wikipedia.org/wiki/Phalanx_bones, VSAO:0000199] +subset: pheno_slim +synonym: "digit long bone" EXACT [OBOL:automatic] +synonym: "long bone of digit" EXACT [OBOL:automatic] +synonym: "phalange" EXACT [] +synonym: "phalanges" EXACT PLURAL [] +synonym: "phalanx bone" EXACT [http://en.wikipedia.org/wiki/Phalanx_bones] +xref: CALOHA:TS-2211 +xref: EMAPA:32614 +xref: FMA:321661 +xref: galen:Phalanx +xref: http://linkedlifedata.com/resource/umls/id/C0222682 +xref: http://www.snomedbrowser.com/Codes/Details/290029003 +xref: MA:0000304 +xref: NCIT:C33317 +xref: OpenCyc:Mx4rvolPZpwpEbGdrcN5Y29ycA +xref: Phalanx:bones +xref: UMLS:C0222682 {source="ncithesaurus:Phalanx"} +xref: VSAO:0000199 +is_a: UBERON:0003606 ! limb long bone +is_a: UBERON:0012357 ! digitopodium bone +is_a: UBERON:0015023 ! phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010701 ! phalanx cartilage element +relationship: part_of UBERON:5102544 ! individual digit of digitopodial skeleton + +[Term] +id: UBERON:0003222 +name: flexor digitorum superficialis +def: "An extrinsic flexor muscle of the fingers at the proximal interphalangeal joints.[WP]." [http://en.wikipedia.org/wiki/Flexor_digitorum_superficialis_muscle] +synonym: "flexor digitorum superficialis muscle" EXACT [http://en.wikipedia.org/wiki/Flexor_digitorum_superficialis_muscle] +synonym: "musculus flexor digitorum superficialis" RELATED LATIN [http://en.wikipedia.org/wiki/Flexor_digitorum_superficialis_muscle] +xref: EMAPA:36202 +xref: FMA:38469 +xref: http://en.wikipedia.org/wiki/Flexor_digitorum_superficialis_muscle +is_a: UBERON:0004254 {source="FMA"} ! forelimb zeugopod muscle +relationship: has_muscle_antagonist UBERON:0007612 {source="dbpedia"} ! extensor digitorum communis +relationship: has_muscle_insertion UBERON:0004301 {notes="anterior margins on the bases of the middle phalanges of the four fingers", source="dbpedia"} ! middle phalanx +relationship: has_muscle_origin UBERON:0006806 {notes="medial epicondyle of the humerus as well as parts of the radius and ulna.", source="dbpedia"} ! entepicondyle of humerus +relationship: innervated_by UBERON:0001148 {source="dbpedia"} ! median nerve + +[Term] +id: UBERON:0003224 +name: chorion syncytiotrophoblast +def: "An extraembryonic structure that develops_from a syncytiotrophoblast and is part of a chorion." [OBOL:automatic] +xref: EHDAA2:0001973 +xref: EHDAA:156 +is_a: UBERON:0000478 ! extraembryonic structure +intersection_of: UBERON:0000478 ! extraembryonic structure +intersection_of: develops_from UBERON:0000371 ! syncytiotrophoblast +intersection_of: part_of UBERON:0003124 ! chorion membrane +relationship: develops_from UBERON:0000371 {notes="polar trophectoderm syncytiotrophoblast", source="EHDAA2"} ! syncytiotrophoblast +relationship: part_of UBERON:0003124 {source="EHDAA2"} ! chorion membrane + +[Term] +id: UBERON:0003228 +name: supinator muscle +def: "A muscle which originates on the distal humerus, inserts on the radius and accomplishes supination (rotation of the wrist)." [http://en.wikipedia.org/wiki/Supinator_muscle] +synonym: "musculus supinator" RELATED LATIN [http://en.wikipedia.org/wiki/Supinator_muscle] +synonym: "supinator" EXACT [] +synonym: "supinator brevus" RELATED DEPRECATED [http://en.wikipedia.org/wiki/Supinator_muscle] +xref: EMAPA:36208 +xref: FMA:38512 +xref: FMA:75002 +xref: http://www.snomedbrowser.com/Codes/Details/181634007 +xref: Supinator:muscle +is_a: UBERON:0004254 {source="FMA"} ! forelimb zeugopod muscle +relationship: has_muscle_antagonist UBERON:0001520 {source="dbpedia"} ! pronator teres +relationship: has_muscle_insertion UBERON:0001423 {source="palaeos"} ! radius bone +relationship: has_muscle_origin UBERON:0001424 {notes="Lateral epicondyle of humerus supinator crest of ulna radial collateral ligament annular ligament", source="dbpedia"} ! ulna +relationship: has_muscle_origin UBERON:0006807 {notes="Lateral epicondyle of humerus supinator crest of ulna radial collateral ligament annular ligament", source="dbpedia"} ! ectepicondyle of humerus +relationship: innervated_by UBERON:0001492 {notes="deep branch of radial nerve", source="dbpedia"} ! radial nerve + +[Term] +id: UBERON:0003229 +name: epithelium of elbow +def: "An epithelium that is part of a elbow [Automatically generated definition]." [OBOL:automatic] +synonym: "cubital region epithelial tissue" EXACT [OBOL:automatic] +synonym: "cubital region epithelium" EXACT [OBOL:automatic] +synonym: "elbow epithelial tissue" EXACT [OBOL:automatic] +synonym: "elbow epithelium" EXACT [OBOL:automatic] +synonym: "epithelial tissue of cubital region" EXACT [OBOL:automatic] +synonym: "epithelial tissue of elbow" EXACT [OBOL:automatic] +synonym: "epithelium of cubital region" EXACT [OBOL:automatic] +xref: EHDAA2:0000430 +xref: EHDAA:4168 +xref: EHDAA:6214 +xref: EMAPA:17415 +xref: VHOG:0001044 +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001461 ! elbow +relationship: develops_from UBERON:0003372 {source="EHDAA2"} ! pectoral appendage bud ectoderm +relationship: part_of UBERON:0001461 ! elbow + +[Term] +id: UBERON:0003230 +name: epithelium of carpal region +def: "An epithelium that is part of a wrist [Automatically generated definition]." [OBOL:automatic] +synonym: "carpal region epithelial tissue" EXACT [OBOL:automatic] +synonym: "carpal region epithelium" EXACT [OBOL:automatic] +synonym: "epithelial tissue of carpal region" EXACT [OBOL:automatic] +synonym: "epithelial tissue of wrist" EXACT [OBOL:automatic] +synonym: "epithelium of wrist" EXACT [OBOL:automatic] +synonym: "wrist epithelial tissue" EXACT [OBOL:automatic] +synonym: "wrist epithelium" EXACT [OBOL:automatic] +xref: EHDAA2:0000219 +xref: EHDAA:5198 +is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0004452 ! carpal region +relationship: develops_from UBERON:0003372 {source="EHDAA2"} ! pectoral appendage bud ectoderm +relationship: part_of UBERON:0004452 ! carpal region + +[Term] +id: UBERON:0003231 +name: epithelium of hip +def: "An epithelium that is part of a hip [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of hip" EXACT [OBOL:automatic] +synonym: "epithelial tissue of hip region" EXACT [OBOL:automatic] +synonym: "epithelial tissue of regio coxae" EXACT [OBOL:automatic] +synonym: "epithelium of hip region" EXACT [OBOL:automatic] +synonym: "epithelium of regio coxae" EXACT [OBOL:automatic] +synonym: "hip epithelial tissue" EXACT [OBOL:automatic] +synonym: "hip epithelium" EXACT [OBOL:automatic] +synonym: "hip region epithelial tissue" EXACT [OBOL:automatic] +synonym: "hip region epithelium" EXACT [OBOL:automatic] +synonym: "regio coxae epithelial tissue" EXACT [OBOL:automatic] +synonym: "regio coxae epithelium" EXACT [OBOL:automatic] +xref: EHDAA2:0000784 +xref: EHDAA:5155 +xref: EHDAA:6180 +xref: EMAPA:17491 +xref: VHOG:0000779 +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001464 ! hip +relationship: develops_from UBERON:0003371 {source="EHDAA2"} ! pelvic appendage bud ectoderm +relationship: part_of UBERON:0001464 ! hip + +[Term] +id: UBERON:0003232 +name: epithelium of knee +def: "An epithelium that is part of a knee [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of knee" EXACT [OBOL:automatic] +synonym: "knee epithelial tissue" EXACT [OBOL:automatic] +synonym: "knee epithelium" EXACT [OBOL:automatic] +xref: EHDAA2:0000896 +xref: EHDAA:5161 +xref: EHDAA:6186 +xref: EMAPA:17494 +xref: VHOG:0000810 +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001465 ! knee +relationship: develops_from UBERON:0003371 {source="EHDAA2"} ! pelvic appendage bud ectoderm +relationship: part_of UBERON:0001465 ! knee + +[Term] +id: UBERON:0003233 +name: epithelium of shoulder +def: "An epithelium that is part of a shoulder [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of shoulder" EXACT [OBOL:automatic] +synonym: "shoulder epithelial tissue" EXACT [OBOL:automatic] +synonym: "shoulder epithelium" EXACT [OBOL:automatic] +xref: EHDAA2:0001835 +xref: EHDAA:4182 +xref: EHDAA:6230 +xref: EMAPA:17422 +xref: VHOG:0000761 +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001467 ! shoulder +relationship: develops_from UBERON:0003372 {source="EHDAA2"} ! pectoral appendage bud ectoderm +relationship: part_of UBERON:0001467 ! shoulder + +[Term] +id: UBERON:0003234 +name: extensor pollicis longus muscle +def: "The Extensor pollicis longus is much larger than the Extensor pollicis brevis muscle, the origin of which it partly covers." [http://en.wikipedia.org/wiki/Extensor_pollicis_longus_muscle] +synonym: "extensor pollicis longis" RELATED [http://en.wikipedia.org/wiki/Extensor_pollicis_longus_muscle] +synonym: "extensor pollicis longus" EXACT [FMA:38521] +synonym: "musculus extensor pollicis longus" RELATED LATIN [http://en.wikipedia.org/wiki/Extensor_pollicis_longus_muscle] +xref: EMAPA:36196 +xref: FMA:38521 +xref: http://en.wikipedia.org/wiki/Extensor_pollicis_longus_muscle +xref: http://www.snomedbrowser.com/Codes/Details/361820003 +is_a: UBERON:0011024 {source="Wikipedia"} ! extrinsic extensor muscle of manus +relationship: has_muscle_antagonist UBERON:0008446 {source="dbpedia"} ! flexor pollicis longus muscle +relationship: has_muscle_antagonist UBERON:0011012 {source="dbpedia"} ! flexor pollicis brevis muscle +relationship: has_muscle_insertion UBERON:0001463 {source="dbpedia"} ! manual digit 1 +relationship: has_muscle_insertion UBERON:0004300 {source="dbpedia"} ! distal phalanx +relationship: has_muscle_origin UBERON:0001424 {source="dbpedia"} ! ulna + +[Term] +id: UBERON:0003235 +name: epithelium of upper jaw +def: "An epithelium that is part of a upper jaw [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of palatoquadrate arch" EXACT [OBOL:automatic] +synonym: "epithelial tissue of upper jaw" EXACT [OBOL:automatic] +synonym: "epithelium of palatoquadrate arch" EXACT [OBOL:automatic] +synonym: "palatoquadrate arch epithelial tissue" EXACT [OBOL:automatic] +synonym: "palatoquadrate arch epithelium" EXACT [OBOL:automatic] +synonym: "upper jaw epithelial tissue" EXACT [OBOL:automatic] +synonym: "upper jaw epithelium" EXACT [OBOL:automatic] +xref: EHDAA2:0002119 +xref: EHDAA:8027 +xref: EMAPA:17943 +xref: EMAPA:18971 +is_a: UBERON:0035037 ! jaw epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001709 ! upper jaw region +relationship: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0003236 +name: epithelium of lower jaw +def: "An epithelium that is part of a lower jaw [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of lower jaw" EXACT [OBOL:automatic] +synonym: "epithelial tissue of ventral mandibular arch" EXACT [OBOL:automatic] +synonym: "epithelium of ventral mandibular arch" EXACT [OBOL:automatic] +synonym: "lower jaw epithelial tissue" EXACT [OBOL:automatic] +synonym: "lower jaw epithelium" EXACT [OBOL:automatic] +synonym: "ventral mandibular arch epithelial tissue" EXACT [OBOL:automatic] +synonym: "ventral mandibular arch epithelium" EXACT [OBOL:automatic] +xref: EHDAA2:0001019 +xref: EHDAA:7999 +xref: EMAPA:35516 +xref: VHOG:0000802 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0035037 ! jaw epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001710 ! lower jaw region +relationship: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0003238 +name: epithelium of superior semicircular canal +def: "An epithelium that is part of an anterior semicircular canal [Automatically generated definition]." [OBOL:automatic] +synonym: "anterior semicircular canal epithelial tissue" EXACT [OBOL:automatic] +synonym: "anterior semicircular canal epithelium" EXACT [OBOL:automatic] +synonym: "epithelial tissue of anterior semicircular canal" EXACT [OBOL:automatic] +synonym: "epithelial tissue of superior semicircular canal" EXACT [OBOL:automatic] +synonym: "epithelium of anterior semicircular canal" EXACT [OBOL:automatic] +synonym: "superior semicircular canal epithelial tissue" EXACT [OBOL:automatic] +synonym: "superior semicircular canal epithelium" EXACT [OBOL:automatic] +xref: EHDAA:7806 +xref: EMAPA:17301 +xref: RETIRED_EHDAA2:0001961 +xref: VHOG:0001039 +is_a: UBERON:0006937 ! inner ear epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001841 ! anterior semicircular canal +disjoint_from: UBERON:0003239 {source="lexical"} ! epithelium of posterior semicircular canal +relationship: part_of UBERON:0001841 ! anterior semicircular canal + +[Term] +id: UBERON:0003239 +name: epithelium of posterior semicircular canal +def: "An epithelium that is part of a posterior semicircular canal [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of posterior semicircular canal" EXACT [OBOL:automatic] +synonym: "posterior semicircular canal epithelial tissue" EXACT [OBOL:automatic] +synonym: "posterior semicircular canal epithelium" EXACT [OBOL:automatic] +xref: EHDAA:7800 +xref: EMAPA:17298 +xref: RETIRED_EHDAA2:0001491 +xref: VHOG:0000758 +is_a: UBERON:0006937 ! inner ear epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001842 ! posterior semicircular canal +relationship: part_of UBERON:0001842 ! posterior semicircular canal + +[Term] +id: UBERON:0003240 +name: epithelium of lateral semicircular canal +def: "An epithelium that is part of a lateral semicircular canal [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of lateral semicircular canal" EXACT [OBOL:automatic] +synonym: "lateral semicircular canal epithelial tissue" EXACT [OBOL:automatic] +synonym: "lateral semicircular canal epithelium" EXACT [OBOL:automatic] +xref: EHDAA:7794 +xref: EMAPA:17823 +xref: RETIRED_EHDAA2:0000922 +xref: VHOG:0000480 +is_a: UBERON:0006937 ! inner ear epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001843 ! lateral semicircular canal +relationship: part_of UBERON:0001843 ! lateral semicircular canal + +[Term] +id: UBERON:0003241 +name: epithelium of utricle +def: "An epithelium that is part of a utricle of membranous labyrinth [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of membranous labyrinth utricle" EXACT [OBOL:automatic] +synonym: "epithelial tissue of utricle" EXACT [OBOL:automatic] +synonym: "epithelial tissue of utricle of membranous labyrinth" EXACT [OBOL:automatic] +synonym: "epithelial tissue of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] +synonym: "epithelium of macula of utricle of membranous labyrinth" NARROW [FMA:75604] +synonym: "epithelium of membranous labyrinth utricle" EXACT [OBOL:automatic] +synonym: "epithelium of utricle of membranous labyrinth" EXACT [OBOL:automatic] +synonym: "epithelium of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] +synonym: "membranous labyrinth utricle epithelial tissue" EXACT [OBOL:automatic] +synonym: "membranous labyrinth utricle epithelium" EXACT [OBOL:automatic] +synonym: "utricle epithelial tissue" EXACT [OBOL:automatic] +synonym: "utricle epithelium" EXACT [OBOL:automatic] +synonym: "utricle of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic] +synonym: "utricle of membranous labyrinth epithelium" EXACT [OBOL:automatic] +synonym: "utriculus (labyrinthus vestibularis) epithelial tissue" EXACT [OBOL:automatic] +synonym: "utriculus (labyrinthus vestibularis) epithelium" EXACT [OBOL:automatic] +xref: EHDAA:4730 +xref: EMAPA:17295 +xref: EMAPA:17298 +xref: EMAPA:17301 +xref: EMAPA:17820 +xref: EMAPA:17823 +xref: FMA:75604 +xref: MA:0001204 +xref: RETIRED_EHDAA2:0002155 +xref: VHOG:0000634 +is_a: UBERON:0006932 {source="FMA"} ! vestibular epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001853 ! utricle of membranous labyrinth +relationship: part_of UBERON:0002214 {source="FMA"} ! macula of utricle of membranous labyrinth + +[Term] +id: UBERON:0003242 +name: epithelium of saccule +def: "An epithelium that is part of a saccule of membranous labyrinth [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of membranous labyrinth saccule" EXACT [OBOL:automatic] +synonym: "epithelial tissue of saccule" EXACT [OBOL:automatic] +synonym: "epithelial tissue of saccule of membranous labyrinth" EXACT [OBOL:automatic] +synonym: "epithelial tissue of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] +synonym: "epithelium of macula of saccule of membranous labyrinth" RELATED [FMA:75605] +synonym: "epithelium of membranous labyrinth saccule" EXACT [OBOL:automatic] +synonym: "epithelium of saccule of membranous labyrinth" EXACT [OBOL:automatic] +synonym: "epithelium of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] +synonym: "membranous labyrinth saccule epithelial tissue" EXACT [OBOL:automatic] +synonym: "membranous labyrinth saccule epithelium" EXACT [OBOL:automatic] +synonym: "saccule epithelial tissue" EXACT [OBOL:automatic] +synonym: "saccule epithelium" EXACT [OBOL:automatic] +synonym: "saccule of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic] +synonym: "saccule of membranous labyrinth epithelium" EXACT [OBOL:automatic] +synonym: "sacculus (labyrinthus vestibularis) epithelial tissue" EXACT [OBOL:automatic] +synonym: "sacculus (labyrinthus vestibularis) epithelium" EXACT [OBOL:automatic] +xref: EHDAA:4724 +xref: EMAPA:17292 +xref: FMA:75605 +xref: MA:0001202 +xref: RETIRED_EHDAA2:0001771 +xref: VHOG:0000633 +is_a: UBERON:0006932 ! vestibular epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001854 ! saccule of membranous labyrinth +relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth + +[Term] +id: UBERON:0003243 +name: epithelium of cochlear duct +def: "An epithelium that is part of a cochlear duct of membranous labyrinth [Automatically generated definition]." [OBOL:automatic] +synonym: "cochlear duct epithelial tissue" EXACT [OBOL:automatic] +synonym: "cochlear duct epithelium" EXACT [OBOL:automatic] +synonym: "cochlear duct of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic] +synonym: "cochlear duct of membranous labyrinth epithelium" EXACT [OBOL:automatic] +synonym: "epithelial tissue of cochlear duct" EXACT [OBOL:automatic] +synonym: "epithelial tissue of cochlear duct of membranous labyrinth" EXACT [OBOL:automatic] +synonym: "epithelial tissue of Reissner's canal" EXACT [OBOL:automatic] +synonym: "epithelium of cochlear duct of membranous labyrinth" EXACT [OBOL:automatic] +synonym: "epithelium of Reissner's canal" EXACT [OBOL:automatic] +synonym: "Reissner's canal epithelial tissue" EXACT [OBOL:automatic] +synonym: "Reissner's canal epithelium" EXACT [OBOL:automatic] +xref: EHDAA:4722 +xref: EMAPA:17600 +xref: RETIRED_EHDAA2:0000264 +xref: VHOG:0000640 +is_a: UBERON:0006937 ! inner ear epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth +relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth + +[Term] +id: UBERON:0003244 +name: epithelium of mammary gland +def: "the epithelial layer of the luminal surfaces of the mammary gland" [MGI:csmith, MP:0009504] +subset: pheno_slim +synonym: "epithelium of lactiferous gland" EXACT [FMA:74445] +synonym: "lactiferous gland epithelium" EXACT [FMA:74445] +synonym: "mammary epithelium" EXACT [BTO:0001430] +synonym: "mammary gland epithelial tissue" EXACT [OBOL:automatic] +synonym: "mammary gland epithelium" EXACT [OBOL:automatic] +xref: BTO:0001430 +xref: CALOHA:TS-0593 +xref: EHDAA2:0001057 +xref: EHDAA:6526 +xref: EMAPA:17760 +xref: FMA:74445 +xref: http://linkedlifedata.com/resource/umls/id/C0596882 +xref: MA:0000792 +xref: NCIT:C12937 +xref: UMLS:C0596882 {source="ncithesaurus:Mammary_Epithelium"} +xref: VHOG:0001088 +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001911 ! mammary gland +relationship: contributes_to_morphology_of UBERON:0001911 ! mammary gland +relationship: develops_from UBERON:0011272 {source="EHDAA2", source="Wikipathways:WP2062"} ! embryonic skin basal layer +relationship: part_of UBERON:0001911 ! mammary gland + +[Term] +id: UBERON:0003246 +name: epithelium of endolymphatic sac +def: "An epithelium that is part of a endolymphatic sac [Automatically generated definition]." [OBOL:automatic] +synonym: "endolymphatic sac epithelial tissue" EXACT [OBOL:automatic] +synonym: "endolymphatic sac epithelium" EXACT [OBOL:automatic] +synonym: "epithelial tissue of endolymphatic sac" EXACT [OBOL:automatic] +xref: EHDAA:7765 +xref: EMAPA:17595 +xref: RETIRED_EHDAA2:0000443 +is_a: UBERON:0006937 ! inner ear epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: adjacent_to UBERON:0000464 ! anatomical space +intersection_of: part_of UBERON:0002223 ! endolymphatic sac +relationship: adjacent_to UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0002223 ! endolymphatic sac + +[Term] +id: UBERON:0003247 +name: epithelium of forearm +def: "An epithelium that is part of a lower arm [Automatically generated definition]." [OBOL:automatic] +synonym: "forearm epithelium" EXACT [] +xref: EHDAA2:0000554 +xref: EHDAA:4174 +xref: EHDAA:6220 +xref: EMAPA:17418 +xref: VHOG:0001096 +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002386 ! forelimb zeugopod +relationship: develops_from UBERON:0003372 {source="EHDAA2"} ! pectoral appendage bud ectoderm +relationship: part_of UBERON:0002386 ! forelimb zeugopod + +[Term] +id: UBERON:0003248 +name: epithelium of footplate +def: "An epithelium that is part of a footplate." [OBOL:automatic] +synonym: "foot plate epithelium" EXACT [] +synonym: "footplate epithelium" EXACT [EHDAA2:0000548] +xref: EHDAA2:0000548 +xref: EHDAA:5145 +xref: EHDAA:6144 +xref: EMAPA:32655 +is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0006871 ! embryonic footplate +relationship: develops_from UBERON:0003372 {source="EHDAA2"} ! pectoral appendage bud ectoderm +relationship: part_of UBERON:0006871 ! embryonic footplate + +[Term] +id: UBERON:0003249 +name: epithelium of otic placode +def: "An epithelium that is part of a otic placode [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of otic placode" EXACT [OBOL:automatic] +synonym: "otic epithelium" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "otic placode epithelial tissue" EXACT [OBOL:automatic] +synonym: "otic placode epithelium" EXACT [OBOL:automatic] +xref: EHDAA2:0001341 +xref: EHDAA:510 +xref: EMAPA:16197 +xref: VHOG:0000636 +xref: ZFA:0007068 +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium +is_a: UBERON:0015807 ! ear epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0003069 ! otic placode +relationship: part_of UBERON:0003069 ! otic placode + +[Term] +id: UBERON:0003250 +name: rectus capitis lateralis muscle +def: "A muscle that arises from the upper surface of the transverse process of the atlas and inserts into the under surface of the jugular process of the occipital bone." [http://en.wikipedia.org/wiki/Rectus_capitis_lateralis_muscle] +subset: organ_slim +synonym: "lateral rectus capitis" EXACT [FMA:46316] +synonym: "musculus rectus capitis lateralis" EXACT LATIN [http://en.wikipedia.org/wiki/Rectus_capitis_lateralis_muscle] +synonym: "rectus capitis lateralis" EXACT [http://en.wikipedia.org/wiki/Rectus_capitis_lateralis_muscle] +synonym: "rectus capitus lateralis" EXACT [http://en.wikipedia.org/wiki/Rectus_capitis_lateralis_muscle] +synonym: "rectus capitus lateralis muscle" EXACT [http://en.wikipedia.org/wiki/Rectus_capitis_lateralis_muscle] +xref: FMA:46316 +xref: http://en.wikipedia.org/wiki/Rectus_capitis_lateralis_muscle +xref: http://www.snomedbrowser.com/Codes/Details/244841001 +is_a: UBERON:0002377 ! muscle of neck +is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column +relationship: has_muscle_insertion UBERON:0001676 {notes="jugular process", source="Wikipedia"} ! occipital bone +relationship: has_muscle_origin UBERON:0011370 ! transverse process of atlas +relationship: innervated_by UBERON:0001780 ! spinal nerve + +[Term] +id: UBERON:0003251 +name: temporal part of head +synonym: "temporal region" RELATED [FMA:63867] +synonym: "temporal region of head" RELATED [FMA:63867] +xref: FMA:63867 +xref: http://www.snomedbrowser.com/Codes/Details/362620003 +is_a: UBERON:0001444 {source="FMA"} ! subdivision of head + +[Term] +id: UBERON:0003252 +name: thoracic rib cage +def: "Subdivision of skeletal system that consists of all ribs in an organism connected to the sternum and the vertebrae. Some vertebrates have abdominal ribs (gastrialia), not connected to the vertebrate - these are not considered part of the rib case." [https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "cavea thoracis" EXACT LATIN [FMA:7480, FMA:TA] +synonym: "cavea thoracis" RELATED LATIN [http://en.wikipedia.org/wiki/Human_rib_cage] +synonym: "rib cage" EXACT [FMA:7480] +synonym: "thoracic cage" EXACT [FMA:7480] +xref: FMA:7480 +xref: galen:RibCage +xref: http://en.wikipedia.org/wiki/Human_rib_cage +xref: http://www.snomedbrowser.com/Codes/Details/361741004 +xref: Rib:cage +is_a: UBERON:0010912 ! subdivision of skeleton +relationship: contributes_to_morphology_of UBERON:0005944 ! axial skeleton plus cranial skeleton +relationship: part_of UBERON:0014477 ! thoracic skeleton +relationship: part_of UBERON:0014478 ! rib skeletal system + +[Term] +id: UBERON:0003253 +name: neck of rib +def: "The neck of the rib is the flattened portion which extends lateralward from the head; it is about 2.5 cm. long, and is placed in front of the transverse process of the lower of the two vertebrC& with which the head articulates. Its anterior surface is flat and smooth, its posterior rough for the attachment of the ligament of the neck, and perforated by numerous foramina. Of its two borders the superior presents a rough crest (crista colli costE) for the attachment of the anterior costotransverse ligament; its inferior border is rounded. On the posterior surface at the junction of the neck and body, and nearer the lower than the upper border, is an eminencebthe tubercle; it consists of an articular and a non-articular portion. The articular portion, the lower and more medial of the two, presents a small, oval surface for articulation with the end of the transverse process of the lower of the two vertebrC& to which the head is connected. The non-articular portion is a rough elevation, and affords attachment to the ligament of the tubercle. The tubercle is much more prominent in the upper than in the lower ribs." [http://en.wikipedia.org/wiki/Neck_of_rib] +synonym: "collum costae" EXACT LATIN [http://en.wikipedia.org/wiki/Neck_of_rib] +synonym: "collum costae" RELATED LATIN [http://en.wikipedia.org/wiki/Neck_of_rib] +synonym: "rib neck" EXACT [FMA:7576] +xref: EMAPA:37826 {source="MA:th"} +xref: FMA:7576 +xref: http://en.wikipedia.org/wiki/Neck_of_rib +xref: http://www.snomedbrowser.com/Codes/Details/263359009 +is_a: UBERON:0005055 ! zone of long bone +is_a: UBERON:0018664 ! neck of bone element +intersection_of: UBERON:0001560 ! neck of organ +intersection_of: part_of UBERON:0002228 ! rib +relationship: part_of UBERON:0010388 {source="http://www.ncbi.nlm.nih.gov/pubmed/15906248"} ! proximal segment of rib + +[Term] +id: UBERON:0003254 +name: amniotic ectoderm +alt_id: UBERON:0008359 +synonym: "amnion ectoderm" EXACT [OBOL:automatic] +synonym: "amnion ectoderm" EXACT [EHDAA2:0000117] +synonym: "amnion epithelium" RELATED [BTO:0000897] +synonym: "amnionic ectoderm" EXACT [ISBN:9780878932504] +synonym: "amnionic ectoderm" EXACT [http://placentation.ucsd.edu/glossfs.html] +xref: BTO:0000897 +xref: EHDAA2:0000117 +xref: EHDAA:138 +xref: EMAPA:16110 +xref: VHOG:0000621 +is_a: UBERON:0000478 {source="EHDAA2"} ! extraembryonic structure +is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0005292 ! extraembryonic tissue +is_a: UBERON:0012275 ! meso-epithelium +relationship: part_of UBERON:0000305 {source="EHDAA2"} ! amnion + +[Term] +id: UBERON:0003255 +name: obsolete ectoderm of embryo +comment: deleted because the original definition was unclear. Me may reconstitute this and to distinguish extramebryonic from embryonic germ layers. See amniotic ectoderm and amniotic mesoderm +synonym: "developmental tissue ectoderm" EXACT [OBOL:automatic] +synonym: "ectoderm of developmental tissue" EXACT [OBOL:automatic] +synonym: "embryo ectoderm" EXACT [OBOL:automatic] +xref: EHDAA:132 +is_obsolete: true + +[Term] +id: UBERON:0003256 +name: obsolete endoderm of embryo +comment: deleted because the original definition was unclear. Me may reconstitute this and to distinguish extramebryonic from embryonic germ layers. See amniotic ectoderm and amniotic mesoderm +synonym: "developmental tissue endoderm" EXACT [OBOL:automatic] +synonym: "embryo endoderm" EXACT [OBOL:automatic] +synonym: "endoderm of developmental tissue" EXACT [OBOL:automatic] +xref: EHDAA:94 +is_obsolete: true + +[Term] +id: UBERON:0003257 +name: yolk sac endoderm +def: "The portion of the yolk sac that is derived from endoderm and lines the yolk sac." [UBERON:cjm] +xref: EHDAA2:0002215 +xref: EHDAA:166 +xref: EMAPA:16086 +xref: VHOG:0000626 +is_a: UBERON:0000478 {source="EHDAA2"} ! extraembryonic structure +is_a: UBERON:0005292 ! extraembryonic tissue +is_a: UBERON:0005911 ! endo-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: bounding_layer_of UBERON:0001040 ! yolk sac +intersection_of: develops_from UBERON:0000925 ! endoderm +relationship: bounding_layer_of UBERON:0001040 ! yolk sac +relationship: part_of UBERON:0001040 ! yolk sac + +[Term] +id: UBERON:0003258 +name: endoderm of foregut +def: "An endoderm that is part of a foregut [Automatically generated definition]." [OBOL:automatic] +synonym: "foregut endoderm" EXACT [OBOL:automatic] +xref: EHDAA2:0004568 +xref: EHDAA:524 +is_a: UBERON:0000490 ! unilaminar epithelium +is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0015833 ! foregut epithelium +intersection_of: UBERON:0000490 ! unilaminar epithelium +intersection_of: develops_from UBERON:0000925 ! endoderm +intersection_of: part_of UBERON:0001041 ! foregut + +[Term] +id: UBERON:0003259 +name: endoderm of midgut +def: "An endoderm that is part of a midgut [Automatically generated definition]." [OBOL:automatic] +synonym: "midgut endoderm" EXACT [OBOL:automatic] +xref: EHDAA:987 +xref: EMAPA:16257 +xref: RETIRED_EHDAA2:0001194 +xref: VHOG:0001080 +is_a: UBERON:0000490 ! unilaminar epithelium +is_a: UBERON:0003352 ! epithelium of midgut +is_a: UBERON:0005911 ! endo-epithelium +intersection_of: UBERON:0000490 ! unilaminar epithelium +intersection_of: develops_from UBERON:0000925 ! endoderm +intersection_of: part_of UBERON:0001045 ! midgut + +[Term] +id: UBERON:0003260 +name: endoderm of hindgut +def: "An endoderm that is part of a hindgut [Automatically generated definition]." [OBOL:automatic] +synonym: "hindgut endoderm" EXACT [OBOL:automatic] +xref: EHDAA:979 +xref: RETIRED_EHDAA2:0000781 +is_a: UBERON:0000490 ! unilaminar epithelium +is_a: UBERON:0003353 ! epithelium of hindgut +is_a: UBERON:0005911 ! endo-epithelium +intersection_of: UBERON:0000490 ! unilaminar epithelium +intersection_of: develops_from UBERON:0000925 ! endoderm +intersection_of: part_of UBERON:0001046 ! hindgut + +[Term] +id: UBERON:0003261 +name: thyroid primordium endoderm +alt_id: UBERON:0005235 +def: "An endoderm that is part of a thyroid primordium." [OBOL:automatic] +synonym: "endoderm of thyroid primordium" EXACT [OBOL:automatic] +xref: EHDAA:956 +xref: EMAPA:25357 +xref: RETIRED_EHDAA2:0002035 +xref: VHOG:0001089 +is_a: UBERON:0000925 ! endoderm +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000925 ! endoderm +intersection_of: part_of UBERON:0003091 ! thyroid primordium +relationship: develops_from UBERON:0007690 {source="ZFA-propagated"} ! early pharyngeal endoderm +relationship: part_of UBERON:0003091 ! thyroid primordium + +[Term] +id: UBERON:0003262 +name: amniotic mesoderm +alt_id: UBERON:0003411 +def: "A mesenchyme that is part of a amnion." [OBOL:automatic] +synonym: "amnion mesenchyme" EXACT [EHDAA2:0000118] +synonym: "amnion mesoderm" EXACT [OBOL:automatic] +synonym: "amnionic mesenchyme" RELATED [EMAPA:16265] +synonym: "amnionic mesoderm" EXACT [http://placentation.ucsd.edu/glossfs.html] +synonym: "amnionic mesoderm" RELATED [EMAPA:16111] +synonym: "mesenchyme of amnion" EXACT [EMAPA:16265] +xref: EHDAA2:0000118 +xref: EHDAA:140 +xref: EMAPA:16111 +xref: EMAPA:16265 +xref: VHOG:0000622 +is_a: UBERON:0000478 {source="EHDAA2"} ! extraembryonic structure +is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue +is_a: UBERON:0010333 ! extraembryonic membrane mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0000305 ! amnion +relationship: part_of UBERON:0000305 ! amnion + +[Term] +id: UBERON:0003265 +name: chorionic mesenchyme +alt_id: UBERON:0003423 +def: "A mesenchyme that is part of a chorion." [OBOL:automatic] +synonym: "chorion mesenchyme" EXACT [OBOL:automatic] +synonym: "chorion mesoderm" EXACT [RETIRED_EHDAA2:0000247] +synonym: "chorionic mesenchyme" EXACT [EHDAA2:0003245] +synonym: "mesenchyme of chorion" EXACT [] +synonym: "mesenchyme of chorion (vertebrates)" EXACT [OBOL:automatic] +xref: EHDAA2:0003245 +xref: EHDAA:154 +xref: EMAPA:16114 +xref: EMAPA:16266 +xref: RETIRED_EHDAA2:0000247 +xref: VHOG:0000620 +is_a: UBERON:0000478 {source="EHDAA2"} ! extraembryonic structure +is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue +is_a: UBERON:0010333 ! extraembryonic membrane mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0003124 ! chorion membrane +relationship: develops_from UBERON:0004871 {source="ISBN:0073040584"} ! somatic layer of lateral plate mesoderm +relationship: part_of UBERON:0003124 ! chorion membrane + +[Term] +id: UBERON:0003266 +name: obsolete nerve of central nervous system +comment: obsoleted pending formal definition of nerve, with explicit reference to PNS vs CNS. See https://github.com/obophenotype/mouse-anatomy-ontology/issues/6 +is_obsolete: true +consider: EHDAA:2851 +consider: EMAPA:17263 + +[Term] +id: UBERON:0003267 +name: tooth of upper jaw +def: "A calcareous tooth that is part of the upper jaw region. In mammals, the upper jaw teeth are attached to the maxilla." [http://orcid.org/0000-0002-6601-2165] +synonym: "maxillary tooth" NARROW [NCBITaxon:40674] +synonym: "upper jaw tooth" EXACT [MA:0001909] +xref: EHDAA:8045 +xref: EMAPA:17938 +xref: http://linkedlifedata.com/resource/umls/id/C1710581 +xref: http://www.snomedbrowser.com/Codes/Details/422279005 +xref: MA:0001909 +xref: NCIT:C49792 +xref: UMLS:C1710581 {source="ncithesaurus:Upper_Jaw_Tooth"} +is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0013765 ! digestive system element +intersection_of: UBERON:0001091 ! calcareous tooth +intersection_of: part_of UBERON:0001709 ! upper jaw region +relationship: attaches_to UBERON:0011597 ! bone of upper jaw +relationship: part_of UBERON:0009680 ! set of upper jaw teeth + +[Term] +id: UBERON:0003268 +name: tooth of lower jaw +def: "A calcareous tooth that is part of the lower jaw region. In mammals, the lower jaw teeth are attached to the mandible (dentary)." [http://orcid.org/0000-0002-6601-2165] +synonym: "calcareous tooth of lower jaw" EXACT [OBOL:automatic] +synonym: "lower jaw calcareous tooth" EXACT [OBOL:automatic] +synonym: "lower jaw dentine containing tooth" EXACT [OBOL:automatic] +synonym: "lower jaw tooth" EXACT [OBOL:automatic] +synonym: "lower jaw vertebrate tooth" EXACT [OBOL:automatic] +synonym: "mandibular tooth" NARROW [NCBITaxon:40674] +xref: EHDAA2:0001029 +xref: EHDAA:8009 +xref: EMAPA:17917 +xref: FMA:321647 +xref: http://linkedlifedata.com/resource/umls/id/C1708757 +xref: http://www.snomedbrowser.com/Codes/Details/422032003 +xref: MA:0001907 +xref: NCIT:C49582 +xref: UMLS:C1708757 {source="ncithesaurus:Lower_Jaw_Tooth"} +is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0013765 ! digestive system element +intersection_of: UBERON:0001091 ! calcareous tooth +intersection_of: part_of UBERON:0001710 ! lower jaw region +relationship: attaches_to UBERON:0004768 ! bone of lower jaw +relationship: part_of UBERON:0009679 ! set of lower jaw teeth + +[Term] +id: UBERON:0003269 +name: skeletal muscle tissue of eye +def: "A portion of skeletal muscle tissue that is part of a eye [Automatically generated definition]." [OBOL:automatic] +synonym: "eye skeletal muscle" EXACT [OBOL:automatic] +synonym: "eye skeletal muscle group" RELATED [EHDAA2:0000486] +synonym: "eye skeletal muscle tissue" EXACT [OBOL:automatic] +synonym: "skeletal muscle tissue of eye" EXACT [OBOL:automatic] +xref: EHDAA2:0000486 +xref: EHDAA:2923 +xref: EMAPA:17844 +is_a: UBERON:0001134 ! skeletal muscle tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0000019 ! camera-type eye +relationship: part_of UBERON:0000019 ! camera-type eye + +[Term] +id: UBERON:0003273 +name: obsolete skeletal muscle tissue of tongue +comment: Merged as it was equivalent to parent - see https://github.com/obophenotype/uberon/issues/331 +is_obsolete: true +replaced_by: UBERON:0000378 + +[Term] +id: UBERON:0003274 +name: mesothelium of omental bursa +def: "A mesothelium that is part of a lesser sac [Automatically generated definition]." [OBOL:automatic] +synonym: "lesser sac mesothelium" EXACT [EHDAA2:0004557] +synonym: "omental bursa mehomhelium" RELATED [VHOG:0000441] +synonym: "omental bursa mesothelium" EXACT [OBOL:automatic] +xref: EHDAA2:0004557 +xref: EHDAA:2339 +xref: EMAPA:16890 +xref: RETIRED_EHDAA2:0001299 +xref: VHOG:0000441 +is_a: UBERON:0001136 ! mesothelium +intersection_of: UBERON:0001136 ! mesothelium +intersection_of: part_of UBERON:0001341 ! lesser sac +relationship: part_of UBERON:0001341 ! lesser sac + +[Term] +id: UBERON:0003276 +name: obsolete skeleton of embryo +def: "A skeletal system that is part of a embryo [Automatically generated definition]." [OBOL:automatic] +synonym: "developmental tissue set of all bones" EXACT [OBOL:automatic] +synonym: "developmental tissue set of bones of body" EXACT [OBOL:automatic] +synonym: "developmental tissue skeletal system" EXACT [OBOL:automatic] +synonym: "developmental tissue skeleton" EXACT [OBOL:automatic] +synonym: "developmental tissue skeleton system" EXACT [OBOL:automatic] +synonym: "embryo set of all bones" EXACT [OBOL:automatic] +synonym: "embryo set of bones of body" EXACT [OBOL:automatic] +synonym: "embryo skeletal system" EXACT [OBOL:automatic] +synonym: "embryo skeleton" EXACT [OBOL:automatic] +synonym: "embryo skeleton system" EXACT [OBOL:automatic] +synonym: "set of all bones of developmental tissue" EXACT [OBOL:automatic] +synonym: "set of all bones of embryo" EXACT [OBOL:automatic] +synonym: "set of bones of body of developmental tissue" EXACT [OBOL:automatic] +synonym: "set of bones of body of embryo" EXACT [OBOL:automatic] +synonym: "skeletal system of developmental tissue" EXACT [OBOL:automatic] +synonym: "skeletal system of embryo" EXACT [OBOL:automatic] +synonym: "skeleton of developmental tissue" EXACT [OBOL:automatic] +synonym: "skeleton system of developmental tissue" EXACT [OBOL:automatic] +synonym: "skeleton system of embryo" EXACT [OBOL:automatic] +is_obsolete: true +consider: UBERON:0004288 + +[Term] +id: UBERON:0003277 +name: skeleton of upper jaw +def: "A subdivision of the skeleton that corresponds to the upper part of the mouth. The lower jaw skeleton includes the following elements, when present: upper jaw teeth, the maxilla and other lower jaw bones." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "upper jaw" BROAD [MA:0001908] +synonym: "upper jaw skeleton" EXACT [] +xref: AAO:0000622 +xref: EHDAA2:0002128 +xref: EHDAA:8041 +xref: EMAPA:17927 +xref: FMA:54397 +xref: MA:0001908 +xref: VHOG:0000429 +xref: XAO:0003087 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010912 ! subdivision of skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0001709 ! upper jaw region +relationship: part_of UBERON:0001708 ! jaw skeleton +relationship: part_of UBERON:0001709 ! upper jaw region +relationship: skeleton_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0003278 +name: skeleton of lower jaw +def: "A subdivision of the skeleton that corresponds to the lower part of the mouth. The lower jaw skeleton includes the following elements, when present: lower jaw teeth, the mandible and other lower jaw bones, and Meckel's cartilage." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "lower jaw" BROAD [MA:0001906] +synonym: "lower jaw" BROAD [ZFA:0001273] +synonym: "lower jaw skeleton" EXACT [AAO:0000274] +synonym: "mandible" BROAD [ZFA:0001273] +synonym: "mandibles" RELATED PLURAL [TAO:0001273] +synonym: "mandibular series" RELATED [ZFA:0001273] +xref: AAO:0000274 +xref: EHDAA2:0004606 +xref: EHDAA:8005 +xref: EMAPA:17906 +xref: EMAPA:17910 +xref: FMA:54398 +xref: MA:0001906 +xref: TAO:0001273 +xref: VHOG:0000428 +xref: XAO:0003084 +xref: ZFA:0001273 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010912 ! subdivision of skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0001710 ! lower jaw region +relationship: part_of UBERON:0001708 ! jaw skeleton +relationship: part_of UBERON:0001710 {source="EHDAA2"} ! lower jaw region +relationship: skeleton_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0003279 +name: endothelium of trachea +def: "An endothelium that is part of a trachea." [OBOL:automatic] +synonym: "endothelium of windpipe" EXACT [OBOL:automatic] +synonym: "trachea endothelium" EXACT [OBOL:automatic] +synonym: "windpipe endothelium" EXACT [OBOL:automatic] +xref: EHDAA:3082 +xref: RETIRED_EHDAA2:0002068 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0001901 ! epithelium of trachea +is_a: UBERON:0001986 ! endothelium +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0003126 ! trachea + +[Term] +id: UBERON:0003280 +name: endothelium of main bronchus +def: "An endothelium that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchus principalis endothelium" EXACT [OBOL:automatic] +synonym: "endothelium of bronchus principalis" EXACT [OBOL:automatic] +synonym: "endothelium of primary bronchus" EXACT [OBOL:automatic] +synonym: "endothelium of principal bronchus" EXACT [OBOL:automatic] +synonym: "main bronchus endothelium" EXACT [OBOL:automatic] +synonym: "primary bronchus endothelium" EXACT [OBOL:automatic] +synonym: "principal bronchus endothelium" EXACT [OBOL:automatic] +xref: EHDAA:3076 +xref: RETIRED_EHDAA2:0001046 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0001986 ! endothelium +is_a: UBERON:0002340 ! epithelium of main bronchus +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0002182 ! main bronchus + +[Term] +id: UBERON:0003281 +name: mesentery of stomach +def: "The portion of the primitive mesentery that encloses the stomach; from its dorsal sheet, the greater omentum develops, and from its ventral sheet, the lesser omentum." [http://medical-dictionary.thefreedictionary.com/mesogastrium] +subset: pheno_slim +synonym: "mesentery of ventriculus" EXACT [OBOL:automatic] +synonym: "mesogaster" EXACT [http://medical-dictionary.thefreedictionary.com/mesogastrium] +synonym: "mesogastium" EXACT [MA:0001617] +synonym: "mesogastrium" EXACT [http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html] +synonym: "stomach mesentery" EXACT [Obol:obol] +synonym: "ventriculus mesentery" EXACT [OBOL:automatic] +xref: EHDAA2:0001922 +xref: EHDAA:2999 +xref: EMAPA:17024 +xref: http://www.snomedbrowser.com/Codes/Details/261623000 +xref: MA:0001617 +xref: VHOG:0000358 +is_a: UBERON:0004854 {source="MA"} ! gastrointestinal system mesentery +intersection_of: UBERON:0002095 ! mesentery +intersection_of: part_of UBERON:0000945 ! stomach +relationship: contributes_to_morphology_of UBERON:0000945 ! stomach +relationship: part_of UBERON:0000945 {source="MA"} ! stomach + +[Term] +id: UBERON:0003282 +name: mesentery of heart +def: "A mesentery that surrounds the heart." [MA:th] +synonym: "cardiac mesentery" RELATED [EMAPA:16212] +synonym: "heart mesentery" EXACT [OBOL:automatic] +synonym: "mesocardium" RELATED [MA:0000098] +xref: EHDAA:432 +xref: EMAPA:16212 +xref: RETIRED_EHDAA2:0000739 +xref: VHOG:0000353 +is_a: UBERON:0002095 ! mesentery +intersection_of: UBERON:0002095 ! mesentery +intersection_of: part_of UBERON:0000948 ! heart +relationship: part_of UBERON:0000948 ! heart + +[Term] +id: UBERON:0003283 +name: mesentery of oesophagus +def: "A mesentery that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] +synonym: "esophagus mesentery" EXACT [MA:0001569] +synonym: "gullet mesentery" EXACT [OBOL:automatic] +synonym: "mesentery of esophagus" EXACT [OBOL:automatic] +synonym: "mesentery of gullet" EXACT [OBOL:automatic] +synonym: "meso-esophagus" EXACT [] +synonym: "oesophagus mesentery" EXACT [VHOG:0000415] +xref: EHDAA2:0001288 +xref: EHDAA:2943 +xref: EMAPA:16836 +xref: MA:0001569 +xref: VHOG:0000415 +is_a: UBERON:0001975 ! serosa of esophagus +is_a: UBERON:0002095 ! mesentery +intersection_of: UBERON:0002095 ! mesentery +intersection_of: part_of UBERON:0001043 ! esophagus + +[Term] +id: UBERON:0003284 +name: mesentery of midgut +def: "A mesentery that is part of a midgut [Automatically generated definition]." [OBOL:automatic] +synonym: "midgut mesentery" EXACT [OBOL:automatic] +xref: EHDAA2:0001202 +xref: EHDAA:3031 +xref: EMAPA:16721 +xref: EMAPA:17039 +xref: EMAPA:17197 +xref: VHOG:0000413 +is_a: UBERON:0002095 ! mesentery +intersection_of: UBERON:0002095 ! mesentery +intersection_of: part_of UBERON:0001045 ! midgut +relationship: part_of UBERON:0001045 ! midgut + +[Term] +id: UBERON:0003285 +name: obsolete limb of embryo +is_obsolete: true +consider: UBERON:0002101 + +[Term] +id: UBERON:0003286 +name: foregut region of duodenum +synonym: "foregut duodenum" EXACT [OBOL:automatic] +xref: EHDAA2:0000560 +xref: EHDAA:3830 +xref: EMAPA:17178 +is_a: UBERON:0004921 ! subdivision of digestive tract +relationship: develops_from UBERON:0001041 ! foregut +relationship: part_of UBERON:0002114 ! duodenum + +[Term] +id: UBERON:0003287 +name: midgut region of duodenum +synonym: "midgut duodenum" EXACT [OBOL:automatic] +xref: EHDAA2:0001189 +xref: EHDAA:3937 +xref: EMAPA:17193 +is_a: UBERON:0004921 ! subdivision of digestive tract +relationship: develops_from UBERON:0001045 ! midgut +relationship: part_of UBERON:0002114 ! duodenum + +[Term] +id: UBERON:0003288 +name: meninx of midbrain +def: "A meninx that is part of a midbrain [Automatically generated definition]." [OBOL:automatic] +synonym: "meninges of midbrain" EXACT PLURAL [OBOL:automatic] +synonym: "mesencephalon meninges" RELATED PLURAL [VHOG:0000012] +synonym: "midbrain meninges" EXACT PLURAL [OBOL:automatic] +synonym: "midbrain meninx" EXACT [OBOL:automatic] +xref: EHDAA2:0001174 +xref: EHDAA:3708 +xref: EMAPA:17791 +xref: MA:0001058 +xref: RETIRED_EHDAA2:0001109 +xref: VHOG:0000012 +is_a: UBERON:0003547 ! brain meninx +intersection_of: UBERON:0002360 ! meninx +intersection_of: part_of UBERON:0001891 ! midbrain +relationship: part_of UBERON:0001891 ! midbrain + +[Term] +id: UBERON:0003289 +name: meninx of telencephalon +def: "A meninx that is part of a telencephalon [Automatically generated definition]." [OBOL:automatic] +synonym: "meninges of telencephalon" EXACT PLURAL [OBOL:automatic] +synonym: "telencephalon meninges" EXACT PLURAL [OBOL:automatic] +synonym: "telencephalon meninx" EXACT [OBOL:automatic] +xref: EHDAA2:0001990 +xref: EHDAA:5476 +xref: EMAPA:17774 +xref: MA:0000979 +xref: VHOG:0000010 +is_a: UBERON:0003548 ! forebrain meninges +intersection_of: UBERON:0002360 ! meninx +intersection_of: part_of UBERON:0001893 ! telencephalon +relationship: part_of UBERON:0001893 ! telencephalon + +[Term] +id: UBERON:0003290 +name: meninx of diencephalon +def: "A meninx that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] +synonym: "between brain meninges" EXACT [OBOL:automatic] +synonym: "between brain meninx" EXACT [OBOL:automatic] +synonym: "diencephalon meninges" EXACT [OBOL:automatic] +synonym: "diencephalon meninx" EXACT [OBOL:automatic] +synonym: "interbrain meninges" EXACT [OBOL:automatic] +synonym: "interbrain meninx" EXACT [OBOL:automatic] +synonym: "mature diencephalon meninges" EXACT [OBOL:automatic] +synonym: "mature diencephalon meninx" EXACT [OBOL:automatic] +synonym: "meninges of between brain" EXACT [OBOL:automatic] +synonym: "meninges of diencephalon" EXACT [OBOL:automatic] +synonym: "meninges of interbrain" EXACT [OBOL:automatic] +synonym: "meninges of mature diencephalon" EXACT [OBOL:automatic] +synonym: "meninx of between brain" EXACT [OBOL:automatic] +synonym: "meninx of interbrain" EXACT [OBOL:automatic] +synonym: "meninx of mature diencephalon" EXACT [OBOL:automatic] +xref: EHDAA2:0000399 +xref: EHDAA:5458 +xref: EMAPA:17764 +xref: MA:0000826 +xref: VHOG:0000009 +is_a: UBERON:0003548 ! forebrain meninges +intersection_of: UBERON:0002360 ! meninx +intersection_of: part_of UBERON:0001894 ! diencephalon +relationship: part_of UBERON:0001894 ! diencephalon + +[Term] +id: UBERON:0003291 +name: meninx of hindbrain +def: "A meninx that is part of a hindbrain [Automatically generated definition]." [OBOL:automatic] +synonym: "hindbrain meninges" EXACT [OBOL:automatic] +synonym: "hindbrain meninx" EXACT [OBOL:automatic] +synonym: "meninges of hindbrain" EXACT [OBOL:automatic] +synonym: "rhomencephalon meninges" RELATED PLURAL [VHOG:0000011] +xref: EHDAA2:0000770 +xref: EHDAA:3688 +xref: EMAPA:17783 +xref: MA:0000987 +xref: VHOG:0000011 +is_a: UBERON:0003547 ! brain meninx +intersection_of: UBERON:0002360 ! meninx +intersection_of: part_of UBERON:0002028 ! hindbrain +relationship: develops_from UBERON:0010091 ! future hindbrain meninx +relationship: immediate_transformation_of UBERON:0010091 {evidence="definitional"} ! future hindbrain meninx +relationship: part_of UBERON:0002028 ! hindbrain + +[Term] +id: UBERON:0003292 +name: meninx of spinal cord +def: "A meninx that is part of a spinal cord [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "menines of spinal cord" EXACT PLURAL [] +synonym: "meninges of spinal cord" EXACT [OBOL:automatic] +synonym: "spinal cord meninges" EXACT [OBOL:automatic] +synonym: "spinal cord meninx" EXACT [OBOL:automatic] +synonym: "spinal meninges" EXACT PLURAL [] +synonym: "spinal meninx" EXACT [] +xref: CALOHA:TS-2148 +xref: EHDAA2:0001895 +xref: EHDAA:2865 +xref: EMAPA:17804 +xref: http://linkedlifedata.com/resource/umls/id/C0037938 +xref: http://www.snomedbrowser.com/Codes/Details/181097002 +xref: MA:0001130 +xref: NCIT:C12350 +xref: UMLS:C0037938 {source="ncithesaurus:Spinal_Meninges"} +xref: VHOG:0000443 +is_a: UBERON:0002360 ! meninx +is_a: UBERON:0005174 ! dorsal region element +intersection_of: UBERON:0002360 ! meninx +intersection_of: part_of UBERON:0002240 ! spinal cord +relationship: part_of UBERON:0002240 ! spinal cord + +[Term] +id: UBERON:0003294 +name: gland of foregut +def: "A gland that is part of a foregut [Automatically generated definition]." [OBOL:automatic] +synonym: "foregut gland" EXACT [OBOL:automatic] +xref: EHDAA2:0000567 +xref: EHDAA:950 +xref: EMAPA:16557 +xref: VHOG:0000650 +is_a: UBERON:0003408 ! gland of digestive tract +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0001041 ! foregut +relationship: part_of UBERON:0001041 ! foregut + +[Term] +id: UBERON:0003295 +name: pharyngeal gland +def: "Racemose mucous glands beneath the mucous membrane of the pharynx." [http://www.biology-online.org/dictionary/] +subset: organ_slim +synonym: "glandulae pharyngeae" RELATED [BTO:0004849] +synonym: "pharynx gland" EXACT [EHDAA2:0001461] +xref: BTO:0004849 +xref: EHDAA2:0001461 +xref: EHDAA:2967 +xref: FMA:55075 +is_a: UBERON:0003408 ! gland of digestive tract +is_a: UBERON:0036225 ! respiratory system gland +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0001042 ! chordate pharynx +relationship: part_of UBERON:0001042 {source="BTO"} ! chordate pharynx + +[Term] +id: UBERON:0003296 +name: gland of diencephalon +def: "Any gland that is part of the diencephalon. Examples: pineal gland, neurohypophysis." [http://orcid.org/0000-0002-6601-2165] +synonym: "diencephalon gland" EXACT [OBOL:automatic] +synonym: "interbrain gland" EXACT [OBOL:automatic] +xref: EHDAA2:0000395 +xref: EHDAA:4475 +xref: EMAPA:16897 +xref: VHOG:0000653 +is_a: UBERON:0002530 ! gland +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0001894 ! diencephalon +relationship: part_of UBERON:0001894 ! diencephalon + +[Term] +id: UBERON:0003297 +name: gland of integumental system +def: "A gland that is part of a integumental system [Automatically generated definition]." [OBOL:automatic] +synonym: "integumental gland" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "integumental system gland" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "integumentary gland" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: EHDAA2:0000837 +xref: EHDAA:6522 +xref: EMAPA:17758 +xref: MA:0000144 +xref: VHOG:0000654 +is_a: UBERON:0002530 ! gland +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0002416 ! integumental system +relationship: part_of UBERON:0002416 ! integumental system + +[Term] +id: UBERON:0003299 +name: roof plate of midbrain +def: "the mesencephalic roof plate, including the caudal and rostral part of the midbrain roof" [MGI:anna, MGI:smb, MP:0006103] +subset: pheno_slim +subset: vertebrate_core +synonym: "midbrain roof" RELATED [EMAPA:16981] +synonym: "midbrain roof plate" EXACT [OBOL:automatic] +synonym: "midbrain roofplate" EXACT [OBOL:automatic] +synonym: "roof plate mesencephalon" RELATED [VHOG:0000772] +synonym: "roof plate midbrain" EXACT [VHOG:0000772] +synonym: "roof plate midbrain region" EXACT [ZFA:0000355] +synonym: "roofplate midbrain" RELATED [VHOG:0000772] +synonym: "roofplate of midbrain" EXACT [OBOL:automatic] +xref: DHBA:12320 +xref: EHDAA2:0001177 +xref: EHDAA:3712 +xref: EMAPA:16981 +xref: RETIRED_EHDAA2:0001111 +xref: TAO:0000355 +xref: VHOG:0000772 +xref: ZFA:0000355 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +intersection_of: UBERON:0000479 ! tissue +intersection_of: part_of UBERON:0001891 ! midbrain +intersection_of: part_of UBERON:0003054 ! roof plate +relationship: contributes_to_morphology_of UBERON:0001891 ! midbrain +relationship: part_of UBERON:0001891 ! midbrain +relationship: part_of UBERON:0003054 ! roof plate + +[Term] +id: UBERON:0003300 +name: roof plate of telencephalon +def: "A roof plate that is part of a telencephalon [Automatically generated definition]." [OBOL:automatic] +synonym: "roof plate telencephalon" EXACT [VHOG:0000774] +synonym: "roofplate medulla telencephalon" RELATED [VHOG:0000774] +synonym: "roofplate of telencephalon" EXACT [OBOL:automatic] +synonym: "telencephalon roof plate" EXACT [OBOL:automatic] +synonym: "telencephalon roofplate" EXACT [OBOL:automatic] +xref: EHDAA2:0001994 +xref: EHDAA:3512 +xref: EMAPA:16657 +xref: VHOG:0000774 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000479 ! tissue +intersection_of: part_of UBERON:0001893 ! telencephalon +intersection_of: part_of UBERON:0003054 ! roof plate +relationship: part_of UBERON:0001893 ! telencephalon +relationship: part_of UBERON:0003054 ! roof plate + +[Term] +id: UBERON:0003301 +name: roof plate of diencephalon +def: "A roof plate that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] +subset: vertebrate_core +synonym: "between brain roof plate" EXACT [OBOL:automatic] +synonym: "between brain roofplate" EXACT [OBOL:automatic] +synonym: "diencephalon roof plate" EXACT [OBOL:automatic] +synonym: "diencephalon roofplate" EXACT [OBOL:automatic] +synonym: "interbrain roof plate" EXACT [OBOL:automatic] +synonym: "interbrain roofplate" EXACT [OBOL:automatic] +synonym: "mature diencephalon roof plate" EXACT [OBOL:automatic] +synonym: "mature diencephalon roofplate" EXACT [OBOL:automatic] +synonym: "roof plate diencephalic region" EXACT [ZFA:0001358] +synonym: "roof plate diencephalon" EXACT [VHOG:0000771] +synonym: "roof plate of between brain" EXACT [OBOL:automatic] +synonym: "roof plate of interbrain" EXACT [OBOL:automatic] +synonym: "roof plate of mature diencephalon" EXACT [OBOL:automatic] +synonym: "roofplate medulla diencephalon" RELATED [VHOG:0000771] +synonym: "roofplate of between brain" EXACT [OBOL:automatic] +synonym: "roofplate of diencephalon" EXACT [OBOL:automatic] +synonym: "roofplate of interbrain" EXACT [OBOL:automatic] +synonym: "roofplate of mature diencephalon" EXACT [OBOL:automatic] +xref: EHDAA2:0000402 +xref: EHDAA:1979 +xref: EHDAA:2657 +xref: EHDAA:3494 +xref: EMAPA:16909 +xref: TAO:0001358 +xref: VHOG:0000771 +xref: ZFA:0001358 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +intersection_of: UBERON:0000479 ! tissue +intersection_of: part_of UBERON:0001894 ! diencephalon +intersection_of: part_of UBERON:0003054 ! roof plate +relationship: part_of UBERON:0001894 ! diencephalon +relationship: part_of UBERON:0003054 ! roof plate + +[Term] +id: UBERON:0003302 +name: roof plate of metencephalon +def: "A roof plate that is part of a metencephalon [Automatically generated definition]." [OBOL:automatic] +synonym: "epencephalon-2 roof plate" EXACT [OBOL:automatic] +synonym: "epencephalon-2 roofplate" EXACT [OBOL:automatic] +synonym: "metencephalon roof plate" EXACT [OBOL:automatic] +synonym: "metencephalon roofplate" EXACT [OBOL:automatic] +synonym: "roof plate metencephalon" EXACT [VHOG:0000770] +synonym: "roof plate of epencephalon-2" EXACT [OBOL:automatic] +synonym: "roofplate medulla metencephalon" RELATED [VHOG:0000770] +synonym: "roofplate of epencephalon-2" EXACT [OBOL:automatic] +synonym: "roofplate of metencephalon" EXACT [OBOL:automatic] +xref: EHDAA2:0001160 +xref: EHDAA:5524 +xref: EMAPA:16483 +xref: EMAPA:16487 +xref: VHOG:0000770 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000479 ! tissue +intersection_of: part_of UBERON:0001895 ! metencephalon +intersection_of: part_of UBERON:0003054 ! roof plate +relationship: part_of UBERON:0001895 ! metencephalon +relationship: part_of UBERON:0003054 ! roof plate + +[Term] +id: UBERON:0003303 +name: roof plate of medulla oblongata +def: "A roof plate that is part of a medulla oblongata [Automatically generated definition]." [OBOL:automatic] +synonym: "bulb roof plate" EXACT [OBOL:automatic] +synonym: "bulb roofplate" EXACT [OBOL:automatic] +synonym: "medulla oblongata roof plate" EXACT [OBOL:automatic] +synonym: "medulla oblongata roofplate" EXACT [OBOL:automatic] +synonym: "medulla oblonmgata roof plate" EXACT [OBOL:automatic] +synonym: "medulla oblonmgata roofplate" EXACT [OBOL:automatic] +synonym: "metepencephalon roof plate" EXACT [OBOL:automatic] +synonym: "metepencephalon roofplate" EXACT [OBOL:automatic] +synonym: "roof plate medulla oblongata" EXACT [VHOG:0000776] +synonym: "roof plate of bulb" EXACT [OBOL:automatic] +synonym: "roof plate of medulla oblonmgata" EXACT [OBOL:automatic] +synonym: "roof plate of metepencephalon" EXACT [OBOL:automatic] +synonym: "roofplate medulla oblongata" RELATED [VHOG:0000776] +synonym: "roofplate of bulb" EXACT [OBOL:automatic] +synonym: "roofplate of medulla oblongata" EXACT [OBOL:automatic] +synonym: "roofplate of medulla oblonmgata" EXACT [OBOL:automatic] +synonym: "roofplate of metepencephalon" EXACT [OBOL:automatic] +xref: EHDAA2:0001099 +xref: EHDAA:7614 +xref: VHOG:0000776 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000479 ! tissue +intersection_of: part_of UBERON:0001896 ! medulla oblongata +intersection_of: part_of UBERON:0003054 ! roof plate +relationship: part_of UBERON:0001896 ! medulla oblongata +relationship: part_of UBERON:0003054 ! roof plate + +[Term] +id: UBERON:0003304 +name: mesoderm blood island +alt_id: UBERON:0003305 +def: "A blood island that is part of a mesoderm." [OBOL:automatic] +synonym: "mesenchyme blood island" RELATED [OBOL:automatic] +synonym: "mesoderm blood islands" EXACT PLURAL [EHDAA2:0003241] +xref: EHDAA2:0003241 +xref: EHDAA:170 +xref: EMAPA:16115 +is_a: UBERON:0003061 ! blood island +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0007503 {source="EHDAA2"} ! epithelial vesicle +is_a: UBERON:0012275 ! meso-epithelium +intersection_of: UBERON:0003061 ! blood island +intersection_of: part_of UBERON:0000926 ! mesoderm +relationship: part_of UBERON:0000926 ! mesoderm +relationship: part_of UBERON:0007798 {source="EHDAA2"} ! vascular system + +[Term] +id: UBERON:0003306 +name: floor plate of neural tube +def: "A floor plate that is part of a neural tube [Automatically generated definition]." [OBOL:automatic] +subset: efo_slim +subset: vertebrate_core +synonym: "floor plate neural tube" EXACT [ZFA:0001434] +synonym: "floorplate neural tube" RELATED [VHOG:0000300] +synonym: "floorplate of neural tube" EXACT [OBOL:automatic] +synonym: "neural tube floor plate" EXACT [OBOL:automatic] +synonym: "neural tube floorplate" EXACT [OBOL:automatic] +xref: EFO:0003688 +xref: EHDAA2:0001256 +xref: EHDAA:2871 +xref: EHDAA:910 +xref: EMAPA:16165 +xref: TAO:0001434 +xref: VHOG:0000300 +xref: ZFA:0001434 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000481 ! multi-tissue structure +intersection_of: part_of UBERON:0001049 ! neural tube +intersection_of: part_of UBERON:0003079 ! floor plate +relationship: part_of UBERON:0003079 ! floor plate + +[Term] +id: UBERON:0003307 +name: floor plate of midbrain +def: "A floor plate that is part of a midbrain [Automatically generated definition]." [OBOL:automatic] +subset: efo_slim +subset: vertebrate_core +synonym: "floor plate mesencephalon" RELATED [VHOG:0000780] +synonym: "floor plate midbrain" EXACT [VHOG:0000780] +synonym: "floor plate midbrain region" EXACT [ZFA:0001677] +synonym: "floorplate midbrain" RELATED [VHOG:0000780] +synonym: "floorplate of midbrain" EXACT [OBOL:automatic] +synonym: "midbrain floor plate" EXACT [OBOL:automatic] +synonym: "midbrain floorplate" EXACT [OBOL:automatic] +xref: DHBA:12325 +xref: EHDAA2:0001164 +xref: EHDAA:3698 +xref: EMAPA:16975 +xref: RETIRED_EHDAA2:0001106 +xref: TAO:0002196 +xref: VHOG:0000780 +xref: ZFA:0001677 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0003306 ! floor plate of neural tube +intersection_of: UBERON:0000481 ! multi-tissue structure +intersection_of: part_of UBERON:0001891 ! midbrain +intersection_of: part_of UBERON:0003079 ! floor plate +relationship: part_of UBERON:0001891 ! midbrain + +[Term] +id: UBERON:0003308 +name: floor plate of telencephalon +def: "A floor plate that is part of a telencephalon [Automatically generated definition]." [OBOL:automatic] +subset: vertebrate_core +synonym: "floor plate telencephalic region" EXACT [ZFA:0000914] +synonym: "floor plate telencephalon" EXACT [VHOG:0000783] +synonym: "floorplate of telencephalon" EXACT [OBOL:automatic] +synonym: "floorplate telencephalon" EXACT [ZFA:0000914] +synonym: "telencephalon floor plate" EXACT [OBOL:automatic] +synonym: "telencephalon floorplate" EXACT [OBOL:automatic] +xref: EHDAA2:0001983 +xref: EHDAA:3498 +xref: EMAPA:16655 +xref: TAO:0000914 +xref: VHOG:0000783 +xref: ZFA:0000914 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0003306 ! floor plate of neural tube +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000481 ! multi-tissue structure +intersection_of: part_of UBERON:0001893 ! telencephalon +intersection_of: part_of UBERON:0003079 ! floor plate +relationship: part_of UBERON:0001893 ! telencephalon + +[Term] +id: UBERON:0003309 +name: floor plate of diencephalon +def: "A floor plate that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] +subset: vertebrate_core +synonym: "between brain floor plate" EXACT [OBOL:automatic] +synonym: "between brain floorplate" EXACT [OBOL:automatic] +synonym: "diencephalon floor plate" EXACT [OBOL:automatic] +synonym: "diencephalon floorplate" EXACT [OBOL:automatic] +synonym: "floor plate diencephalic region" EXACT [ZFA:0000871] +synonym: "floor plate diencephalon" EXACT [VHOG:0000782] +synonym: "floor plate of between brain" EXACT [OBOL:automatic] +synonym: "floor plate of interbrain" EXACT [OBOL:automatic] +synonym: "floor plate of mature diencephalon" EXACT [OBOL:automatic] +synonym: "floorplate diencephalon" EXACT [ZFA:0000871] +synonym: "floorplate of between brain" EXACT [OBOL:automatic] +synonym: "floorplate of diencephalon" EXACT [OBOL:automatic] +synonym: "floorplate of interbrain" EXACT [OBOL:automatic] +synonym: "floorplate of mature diencephalon" EXACT [OBOL:automatic] +synonym: "interbrain floor plate" EXACT [OBOL:automatic] +synonym: "interbrain floorplate" EXACT [OBOL:automatic] +synonym: "mature diencephalon floor plate" EXACT [OBOL:automatic] +synonym: "mature diencephalon floorplate" EXACT [OBOL:automatic] +xref: EHDAA2:0000388 +xref: EHDAA:1975 +xref: EHDAA:2651 +xref: EHDAA:3480 +xref: EMAPA:16903 +xref: TAO:0000871 +xref: VHOG:0000782 +xref: ZFA:0000871 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0003306 ! floor plate of neural tube +intersection_of: UBERON:0000481 ! multi-tissue structure +intersection_of: part_of UBERON:0001894 ! diencephalon +intersection_of: part_of UBERON:0003079 ! floor plate +relationship: part_of UBERON:0001894 ! diencephalon + +[Term] +id: UBERON:0003310 +name: floor plate of metencephalon +def: "A floor plate that is part of a metencephalon [Automatically generated definition]." [OBOL:automatic] +synonym: "epencephalon-2 floor plate" EXACT [OBOL:automatic] +synonym: "epencephalon-2 floorplate" EXACT [OBOL:automatic] +synonym: "floor plate metencephalon" EXACT [VHOG:0000784] +synonym: "floor plate of epencephalon-2" EXACT [OBOL:automatic] +synonym: "floorplate metencephalon" RELATED [VHOG:0000784] +synonym: "floorplate of epencephalon-2" EXACT [OBOL:automatic] +synonym: "floorplate of metencephalon" EXACT [OBOL:automatic] +synonym: "metencephalon floor plate" EXACT [OBOL:automatic] +synonym: "metencephalon floorplate" EXACT [OBOL:automatic] +xref: EHDAA2:0001158 +xref: EHDAA:5500 +xref: EMAPA:16291 +xref: EMAPA:16294 +xref: EMAPA:17258 +xref: VHOG:0000784 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0003306 ! floor plate of neural tube +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000481 ! multi-tissue structure +intersection_of: part_of UBERON:0001895 ! metencephalon +intersection_of: part_of UBERON:0003079 ! floor plate +relationship: part_of UBERON:0001895 ! metencephalon + +[Term] +id: UBERON:0003311 +name: floor plate of medulla oblongata +def: "A floor plate that is part of a medulla oblongata [Automatically generated definition]." [OBOL:automatic] +synonym: "bulb floor plate" EXACT [OBOL:automatic] +synonym: "bulb floorplate" EXACT [OBOL:automatic] +synonym: "floor plate medulla oblongata" EXACT [VHOG:0000786] +synonym: "floor plate of bulb" EXACT [OBOL:automatic] +synonym: "floor plate of medulla oblonmgata" EXACT [OBOL:automatic] +synonym: "floor plate of metepencephalon" EXACT [OBOL:automatic] +synonym: "floorplate medulla oblongata" RELATED [VHOG:0000786] +synonym: "floorplate of bulb" EXACT [OBOL:automatic] +synonym: "floorplate of medulla oblongata" EXACT [OBOL:automatic] +synonym: "floorplate of medulla oblonmgata" EXACT [OBOL:automatic] +synonym: "floorplate of metepencephalon" EXACT [OBOL:automatic] +synonym: "medulla oblongata floor plate" EXACT [OBOL:automatic] +synonym: "medulla oblongata floorplate" EXACT [OBOL:automatic] +synonym: "medulla oblonmgata floor plate" EXACT [OBOL:automatic] +synonym: "medulla oblonmgata floorplate" EXACT [OBOL:automatic] +synonym: "metepencephalon floor plate" EXACT [OBOL:automatic] +synonym: "metepencephalon floorplate" EXACT [OBOL:automatic] +xref: EHDAA2:0001097 +xref: EHDAA:7590 +xref: EMAPA:17551 +xref: VHOG:0000786 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0003306 ! floor plate of neural tube +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000481 ! multi-tissue structure +intersection_of: part_of UBERON:0001896 ! medulla oblongata +intersection_of: part_of UBERON:0003079 ! floor plate +relationship: part_of UBERON:0001896 ! medulla oblongata + +[Term] +id: UBERON:0003312 +name: mesenchyme of testis +def: "Mesenchyme that is part of a developing testis [Automatically generated definition]." [OBOL:automatic] +synonym: "testis mesenchyme" EXACT [OBOL:automatic] +xref: EHDAA2:0002010 +xref: EHDAA:8150 +xref: EMAPA:35858 +xref: VHOG:0001442 +is_a: UBERON:0003855 ! gonad mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0000473 ! testis +relationship: part_of UBERON:0000473 ! testis + +[Term] +id: UBERON:0003314 +name: eye mesenchyme +def: "Mesenchyme that is part of a developing camera-type eye." [OBOL:automatic] +synonym: "mesenchyme of eye" EXACT [OBOL:automatic] +xref: EHDAA2:0000485 +xref: EHDAA:2910 +xref: EMAPA:16673 +xref: VHOG:0001084 +is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0009891 ! facial mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0000019 ! camera-type eye +relationship: develops_from UBERON:0009920 {source="EHDAA2"} ! optic neural crest +relationship: part_of UBERON:0000019 ! camera-type eye + +[Term] +id: UBERON:0003315 +name: mesenchyme of ovary +def: "Mesenchyme that is part of a developing ovary [Automatically generated definition]." [OBOL:automatic] +synonym: "female reproductive system gonad mesenchyme" EXACT [OBOL:automatic] +synonym: "female reproductive system gonada mesenchyme" EXACT [OBOL:automatic] +synonym: "gonad of female reproductive system mesenchyme" EXACT [OBOL:automatic] +synonym: "gonada of female reproductive system mesenchyme" EXACT [OBOL:automatic] +synonym: "mesenchyme of female reproductive system gonad" EXACT [OBOL:automatic] +synonym: "mesenchyme of female reproductive system gonada" EXACT [OBOL:automatic] +synonym: "mesenchyme of gonad of female reproductive system" EXACT [OBOL:automatic] +synonym: "mesenchyme of gonada of female reproductive system" EXACT [OBOL:automatic] +synonym: "ovary mesenchyme" EXACT [OBOL:automatic] +xref: EHDAA2:0001362 +xref: EHDAA:8128 +xref: VHOG:0001441 +is_a: UBERON:0003855 ! gonad mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0000992 ! ovary +relationship: part_of UBERON:0000992 ! ovary + +[Term] +id: UBERON:0003316 +name: mesenchyme of yolk sac +alt_id: UBERON:0003264 +def: "The portion of the yolk sac that is derived from mesoderm and consists of mesenchyme." [UBERON:cjm] +synonym: "yolk sac mesenchyme" EXACT [OBOL:automatic] +xref: EHDAA2:0002216 +xref: EHDAA:168 +xref: EHDAA:205 +xref: EMAPA:16087 +xref: EMAPA:16267 +xref: VHOG:0000503 +xref: VHOG:0000617 +is_a: UBERON:0010333 ! extraembryonic membrane mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001040 ! yolk sac +relationship: part_of UBERON:0001040 ! yolk sac + +[Term] +id: UBERON:0003317 +name: odontogenic papilla of incisor +def: "An odontogenic papilla that is part of a incisor tooth [Automatically generated definition]." [OBOL:automatic] +synonym: "incisor dental papilla" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "incisor odontogenic papilla" EXACT [OBOL:automatic] +synonym: "incisor tooth odontogenic papilla" EXACT [OBOL:automatic] +synonym: "odontogenic papilla of incisor tooth" EXACT [OBOL:automatic] +xref: EMAPA:32893 +xref: MA:0003231 +is_a: UBERON:0001763 ! odontogenic papilla +intersection_of: UBERON:0001763 ! odontogenic papilla +intersection_of: part_of UBERON:0001098 ! incisor tooth +relationship: develops_from UBERON:0015846 ! incisor mesenchyme +relationship: part_of UBERON:0001098 ! incisor tooth + +[Term] +id: UBERON:0003318 +name: mesenchyme of elbow +def: "Mesenchyme that is part of a developing elbow [Automatically generated definition]." [OBOL:automatic] +synonym: "cubital region mesenchyme" EXACT [OBOL:automatic] +synonym: "elbow mesenchyme" EXACT [OBOL:automatic] +synonym: "mesenchyme of cubital region" EXACT [OBOL:automatic] +xref: EHDAA2:0000432 +xref: EHDAA:4170 +xref: EHDAA:6216 +xref: EMAPA:17416 +xref: VHOG:0001075 +is_a: UBERON:0003859 ! forelimb mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001461 ! elbow +relationship: part_of UBERON:0001461 ! elbow + +[Term] +id: UBERON:0003319 +name: mesenchyme of carpal region +def: "Mesenchyme of the carpal region that contributes to the carpal skeleton." [https://orcid.org/0000-0002-6601-2165] +synonym: "carpal region mesenchyme" EXACT [OBOL:automatic] +synonym: "carpus mesenchyme" EXACT [OBOL:automatic] +synonym: "mesenchyme of wrist" EXACT [OBOL:automatic] +synonym: "wrist mesenchyme" EXACT [OBOL:automatic] +xref: EHDAA2:0000220 +xref: EHDAA:5200 +xref: EMAPA:19122 +is_a: UBERON:0003859 ! forelimb mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0004452 ! carpal region +relationship: part_of UBERON:0004452 ! carpal region + +[Term] +id: UBERON:0003320 +name: mesenchyme of hip +def: "Mesenchyme that is part of a developing hip [Automatically generated definition]." [OBOL:automatic] +synonym: "hip mesenchyme" EXACT [OBOL:automatic] +synonym: "hip region mesenchyme" EXACT [OBOL:automatic] +synonym: "mesenchyme of hip region" EXACT [OBOL:automatic] +synonym: "mesenchyme of regio coxae" EXACT [OBOL:automatic] +synonym: "regio coxae mesenchyme" EXACT [OBOL:automatic] +xref: EHDAA2:0000786 +xref: EHDAA:5157 +xref: EHDAA:6182 +xref: EMAPA:17492 +xref: VHOG:0001029 +is_a: UBERON:0003104 ! mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001464 ! hip +relationship: part_of UBERON:0001464 ! hip + +[Term] +id: UBERON:0003321 +name: mesenchyme of knee +def: "Mesenchyme that is part of a developing knee [Automatically generated definition]." [OBOL:automatic] +synonym: "knee mesenchyme" EXACT [OBOL:automatic] +xref: EHDAA2:0000898 +xref: EHDAA:5163 +xref: EHDAA:6188 +xref: EMAPA:17495 +xref: VHOG:0001070 +is_a: UBERON:0003860 ! hindlimb mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001465 ! knee +relationship: part_of UBERON:0001465 ! knee + +[Term] +id: UBERON:0003322 +name: mesenchyme of shoulder +def: "Mesenchyme that is part of a developing shoulder [Automatically generated definition]." [OBOL:automatic] +synonym: "shoulder mesenchyme" EXACT [OBOL:automatic] +xref: EHDAA2:0001837 +xref: EHDAA:4184 +xref: EHDAA:6232 +xref: EMAPA:17423 +xref: VHOG:0001035 +is_a: UBERON:0003104 ! mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001467 ! shoulder +relationship: part_of UBERON:0001467 ! shoulder + +[Term] +id: UBERON:0003323 +name: mesenchyme of upper jaw +def: "Mesenchyme that is part of a developing upper jaw [Automatically generated definition]." [OBOL:automatic] +synonym: "mesenchyme of palatoquadrate arch" EXACT [OBOL:automatic] +synonym: "palatoquadrate arch mesenchyme" EXACT [OBOL:automatic] +synonym: "upper jaw mesenchyme" EXACT [OBOL:automatic] +xref: EHDAA2:0002124 +xref: EHDAA:8031 +xref: EMAPA:17929 +xref: VHOG:0001099 +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0034995 ! jaw mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001709 ! upper jaw region +relationship: develops_from UBERON:0009526 {source="EHDAA2"} ! maxillary process mesenchyme +relationship: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0003324 +name: mesenchyme of lower jaw +def: "Mesenchyme that is part of a developing lower jaw [Automatically generated definition]." [OBOL:automatic] +synonym: "lower jaw mesenchyme" EXACT [OBOL:automatic] +synonym: "mesenchyme of ventral mandibular arch" EXACT [OBOL:automatic] +synonym: "ventral mandibular arch mesenchyme" EXACT [OBOL:automatic] +xref: EHDAA2:0001024 +xref: EHDAA:8003 +xref: EMAPA:17916 +xref: VHOG:0001069 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0034995 ! jaw mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001710 ! lower jaw region +relationship: develops_from UBERON:0006905 {source="EHDAA2"} ! mandibular process mesenchyme +relationship: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0003325 +name: mesenchyme of pinna +def: "Mesenchyme that is part of a developing pinna [Automatically generated definition]." [OBOL:automatic] +synonym: "auricle mesenchyme" EXACT [OBOL:automatic] +synonym: "auricle of ear mesenchyme" EXACT [OBOL:automatic] +synonym: "auricle of external ear mesenchyme" EXACT [OBOL:automatic] +synonym: "auricula (auris externa) mesenchyme" EXACT [OBOL:automatic] +synonym: "auricula mesenchyme" EXACT [OBOL:automatic] +synonym: "mesenchyme of auricle" EXACT [OBOL:automatic] +synonym: "mesenchyme of auricle of ear" EXACT [OBOL:automatic] +synonym: "mesenchyme of auricle of external ear" EXACT [OBOL:automatic] +synonym: "mesenchyme of auricula" EXACT [OBOL:automatic] +synonym: "mesenchyme of auricula (auris externa)" EXACT [OBOL:automatic] +synonym: "mesenchyme of pinna of ear" EXACT [OBOL:automatic] +synonym: "pinna mesenchyme" EXACT [OBOL:automatic] +synonym: "pinna of ear mesenchyme" EXACT [OBOL:automatic] +xref: EHDAA2:0001469 +xref: EHDAA:8981 +xref: EMAPA:17591 +xref: VHOG:0000747 +is_a: UBERON:0005253 ! head mesenchyme +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001757 ! pinna +relationship: part_of UBERON:0001757 ! pinna + +[Term] +id: UBERON:0003326 +name: mesenchyme of mammary gland +def: "Mesenchyme that is part of a developing mammary gland." [OBOL:automatic] +synonym: "lactiferous gland mesenchyme" EXACT [OBOL:automatic] +synonym: "lobe of breast mesenchyme" EXACT [OBOL:automatic] +synonym: "lobe of mammary gland mesenchyme" EXACT [OBOL:automatic] +synonym: "mammary gland mesenchyme" EXACT [OBOL:automatic] +synonym: "mammary mesenchyme" EXACT [] +synonym: "mesenchyme of lactiferous gland" EXACT [OBOL:automatic] +synonym: "mesenchyme of lobe of breast" EXACT [OBOL:automatic] +synonym: "mesenchyme of lobe of mammary gland" EXACT [OBOL:automatic] +xref: EHDAA2:0001058 +xref: EHDAA:6528 +xref: EMAPA:17761 +xref: VHOG:0001087 +is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001911 ! mammary gland +relationship: part_of UBERON:0001911 ! mammary gland + +[Term] +id: UBERON:0003327 +name: mesenchyme of forearm +def: "Mesenchyme that is part of a developing lower arm [Automatically generated definition]." [OBOL:automatic] +xref: EHDAA2:0000555 +xref: EHDAA:4176 +xref: EHDAA:6222 +xref: EMAPA:17419 +xref: VHOG:0000504 +is_a: UBERON:0003859 ! forelimb mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0002386 ! forelimb zeugopod +relationship: part_of UBERON:0002386 ! forelimb zeugopod + +[Term] +id: UBERON:0003328 +name: mesenchyme of footplate +alt_id: UBERON:0005260 +def: "Mesenchyme that is part of a footplate." [OBOL:automatic] +synonym: "foot plate mesenchyme" EXACT [] +xref: EHDAA2:0000549 +xref: EHDAA:5149 +xref: EHDAA:6172 +xref: EMAPA:17252 +xref: EMAPA:17488 +xref: VHOG_RETIRED:0001055 +is_a: UBERON:0010377 ! mesenchyme from somatopleure +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0006871 ! embryonic footplate +relationship: develops_from UBERON:0003412 {source="EHDAA2"} ! pelvic appendage bud mesenchyme +relationship: part_of UBERON:0006871 ! embryonic footplate + +[Term] +id: UBERON:0003329 +name: submucosa of anal canal +def: "A submucosa that is part of an anal canal [Automatically generated definition]." [OBOL:automatic] +synonym: "anal canal submucosa" EXACT [OBOL:automatic] +synonym: "anal canal viewed anatomically submucosa" EXACT [OBOL:automatic] +synonym: "anal region submucosa" EXACT [OBOL:automatic] +synonym: "anatomical anal canal submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of anal canal viewed anatomically" EXACT [OBOL:automatic] +synonym: "submucosa of anal region" EXACT [OBOL:automatic] +synonym: "submucosa of anatomical anal canal" EXACT [OBOL:automatic] +xref: EMAPA:27217 +xref: EMAPA:27227 +xref: EMAPA:27535 +xref: FMA:85399 +xref: http://www.snomedbrowser.com/Codes/Details/7892006 +is_a: UBERON:0001208 ! submucosa of large intestine +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0000159 ! anal canal +relationship: part_of UBERON:0000159 ! anal canal + +[Term] +id: UBERON:0003330 +name: submucosa of rectum +def: "The submucous layer of the wall of the rectum." [BTO:0002114] +synonym: "rectal submucosa" EXACT [FMA:15034] +synonym: "rectum submucosa" EXACT [OBOL:automatic] +synonym: "tela submucosa recti" EXACT LATIN [BTO:0002114] +xref: BTO:0002114 +xref: EMAPA:27083 +xref: FMA:15034 +xref: http://www.snomedbrowser.com/Codes/Details/71683001 +is_a: UBERON:0001208 ! submucosa of large intestine +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001052 ! rectum +relationship: part_of UBERON:0001052 ! rectum + +[Term] +id: UBERON:0003331 +name: submucosa of colon +def: "A submucosa that is part of a colon [Automatically generated definition]." [OBOL:automatic] +synonym: "colon submucosa" EXACT [OBOL:automatic] +synonym: "colonic submucosa" EXACT [FMA:14985] +synonym: "large bowel submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of large bowel" EXACT [OBOL:automatic] +xref: EMAPA:27379 +xref: FMA:14985 +xref: http://www.snomedbrowser.com/Codes/Details/61647009 +xref: MA:0003200 +is_a: UBERON:0001208 ! submucosa of large intestine +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001155 ! colon +relationship: part_of UBERON:0001155 ! colon + +[Term] +id: UBERON:0003332 +name: submucosa of duodenum +def: "A submucosa that is part of a duodenum [Automatically generated definition]." [OBOL:automatic] +synonym: "doudenal submucosa" EXACT [FMA:14943] +synonym: "duodenal submucosa" EXACT [FMA:14943] +synonym: "duodenum submucosa" EXACT [OBOL:automatic] +xref: EMAPA:27027 +xref: EMAPA:27097 +xref: EMAPA:27239 +xref: FMA:14943 +xref: http://www.snomedbrowser.com/Codes/Details/76519004 +xref: MA:0003213 +is_a: UBERON:0001205 ! submucosa of small intestine +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0002114 ! duodenum +relationship: part_of UBERON:0002114 ! duodenum + +[Term] +id: UBERON:0003333 +name: submucosa of jejunum +def: "A submucosa that is part of a jejunum [Automatically generated definition]." [OBOL:automatic] +synonym: "jejunal submucosa" EXACT [FMA:14950] +synonym: "jejunum submucosa" EXACT [OBOL:automatic] +xref: EMAPA:27111 +xref: FMA:14950 +xref: http://www.snomedbrowser.com/Codes/Details/70192009 +is_a: UBERON:0001205 ! submucosa of small intestine +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0002115 ! jejunum +relationship: part_of UBERON:0002115 ! jejunum + +[Term] +id: UBERON:0003334 +name: serosa of rectum +def: "A serous membrane that is part of a rectum [Automatically generated definition]." [OBOL:automatic] +synonym: "rectal serosa" EXACT [FMA:15039] +synonym: "rectum serosa" EXACT [OBOL:automatic] +synonym: "rectum serous membrane" EXACT [OBOL:automatic] +synonym: "serous membrane of rectum" EXACT [OBOL:automatic] +synonym: "visceral peritoneum of rectum" EXACT [FMA:15039] +xref: EMAPA:27087 +xref: FMA:15039 +is_a: UBERON:0001209 ! serosa of large intestine +intersection_of: UBERON:0000042 ! serous membrane +intersection_of: part_of UBERON:0001052 ! rectum +relationship: part_of UBERON:0001052 ! rectum + +[Term] +id: UBERON:0003335 +name: serosa of colon +def: "A serous membrane that is part of a colon [Automatically generated definition]." [OBOL:automatic] +synonym: "colon serosa" EXACT [OBOL:automatic] +synonym: "colon serous membrane" EXACT [OBOL:automatic] +synonym: "colonic serosa" EXACT [FMA:14990] +synonym: "large bowel serosa" EXACT [OBOL:automatic] +synonym: "large bowel serous membrane" EXACT [OBOL:automatic] +synonym: "serosa of large bowel" EXACT [OBOL:automatic] +synonym: "serous membrane of colon" EXACT [OBOL:automatic] +synonym: "serous membrane of large bowel" EXACT [OBOL:automatic] +synonym: "visceral peritoneum of colon" EXACT [FMA:14990] +xref: EMAPA:27387 +xref: FMA:14990 +xref: http://www.snomedbrowser.com/Codes/Details/90132000 +xref: MA:0003199 +is_a: UBERON:0001209 ! serosa of large intestine +intersection_of: UBERON:0000042 ! serous membrane +intersection_of: part_of UBERON:0001155 ! colon +relationship: part_of UBERON:0001155 ! colon + +[Term] +id: UBERON:0003336 +name: serosa of duodenum +def: "A serous membrane that is part of a duodenum [Automatically generated definition]." [OBOL:automatic] +synonym: "doudenal serosa" EXACT [FMA:14948] +synonym: "duodenal serosa" EXACT [FMA:14948] +synonym: "duodenum serosa" EXACT [OBOL:automatic] +synonym: "duodenum serous membrane" EXACT [OBOL:automatic] +synonym: "serous membrane of duodenum" EXACT [OBOL:automatic] +synonym: "visceral peritoneum of duodenum" EXACT [FMA:14948] +xref: EMAPA:27247 +xref: FMA:14948 +xref: http://www.snomedbrowser.com/Codes/Details/1236009 +xref: MA:0003212 +is_a: UBERON:0001206 ! serosa of small intestine +intersection_of: UBERON:0000042 ! serous membrane +intersection_of: part_of UBERON:0002114 ! duodenum +relationship: part_of UBERON:0002114 ! duodenum + +[Term] +id: UBERON:0003337 +name: serosa of jejunum +def: "A serous membrane that is part of a jejunum [Automatically generated definition]." [OBOL:automatic] +synonym: "jejunal serosa" EXACT [FMA:14955] +synonym: "jejunum serosa" EXACT [OBOL:automatic] +synonym: "jejunum serous membrane" EXACT [OBOL:automatic] +synonym: "serous membrane of jejunum" EXACT [OBOL:automatic] +synonym: "visceral peritoneum of jejunum" EXACT [FMA:14955] +xref: EMAPA:27115 +xref: FMA:14955 +is_a: UBERON:0001206 ! serosa of small intestine +intersection_of: UBERON:0000042 ! serous membrane +intersection_of: part_of UBERON:0002115 ! jejunum +relationship: part_of UBERON:0002115 ! jejunum + +[Term] +id: UBERON:0003338 +name: ganglion of peripheral nervous system +def: "A spatially aggregated collection of nerve cell bodies in the PNS, consisting of one or more subpopulations that share cell type, chemical phenotype, and connections. (CUMBO)." [BIRNLEX:2548] +subset: cumbo +synonym: "peripheral nervous system ganglion" EXACT [OBOL:automatic] +xref: BIRNLEX:2548 +xref: BTO:0001123 +xref: EMAPA:32814 +xref: MA:0001161 +is_a: UBERON:0000045 ! ganglion +intersection_of: UBERON:0000045 ! ganglion +intersection_of: part_of UBERON:0000010 ! peripheral nervous system +relationship: part_of UBERON:0000010 ! peripheral nervous system + +[Term] +id: UBERON:0003339 +name: ganglion of central nervous system +def: "A ganglion that is part of a central nervous system [Automatically generated definition]." [OBOL:automatic] +synonym: "central nervous system ganglion" EXACT [OBOL:automatic] +synonym: "ganglion of neuraxis" EXACT [OBOL:automatic] +synonym: "neuraxis ganglion" EXACT [OBOL:automatic] +xref: EHDAA2:0000227 +xref: EMAPA:16658 +xref: FMA:83843 +is_a: UBERON:0000045 ! ganglion +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000045 ! ganglion +intersection_of: part_of UBERON:0001017 ! central nervous system +relationship: part_of UBERON:0001017 ! central nervous system + +[Term] +id: UBERON:0003340 +name: obsolete urethra of urogenital sinus +is_obsolete: true +consider: EMAPA:30901 + +[Term] +id: UBERON:0003341 +name: obsolete urethra of urinary system +is_obsolete: true + +[Term] +id: UBERON:0003342 +name: mucosa of anal canal +def: "A mucosa that is part of an anal canal [Automatically generated definition]." [OBOL:automatic] +synonym: "anal canal mucosa" EXACT [OBOL:automatic] +synonym: "anal canal mucosa of organ" EXACT [OBOL:automatic] +synonym: "anal canal mucous membrane" EXACT [OBOL:automatic] +synonym: "anal canal organ mucosa" EXACT [OBOL:automatic] +synonym: "anal canal viewed anatomically mucosa" EXACT [OBOL:automatic] +synonym: "anal canal viewed anatomically mucosa of organ" EXACT [OBOL:automatic] +synonym: "anal canal viewed anatomically mucous membrane" EXACT [OBOL:automatic] +synonym: "anal canal viewed anatomically organ mucosa" EXACT [OBOL:automatic] +synonym: "anal mucosa" EXACT [FMA:74654] +synonym: "anal mucous membrane" EXACT [FMA:74654] +synonym: "anal region mucosa" EXACT [OBOL:automatic] +synonym: "anal region mucosa of organ" EXACT [OBOL:automatic] +synonym: "anal region mucous membrane" EXACT [OBOL:automatic] +synonym: "anal region organ mucosa" EXACT [OBOL:automatic] +synonym: "anatomical anal canal mucosa" EXACT [OBOL:automatic] +synonym: "anatomical anal canal mucosa of organ" EXACT [OBOL:automatic] +synonym: "anatomical anal canal mucous membrane" EXACT [OBOL:automatic] +synonym: "anatomical anal canal organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of anal canal viewed anatomically" EXACT [OBOL:automatic] +synonym: "mucosa of anal region" EXACT [OBOL:automatic] +synonym: "mucosa of anatomical anal canal" EXACT [OBOL:automatic] +synonym: "mucosa of organ of anal canal" EXACT [OBOL:automatic] +synonym: "mucosa of organ of anal canal viewed anatomically" EXACT [OBOL:automatic] +synonym: "mucosa of organ of anal region" EXACT [OBOL:automatic] +synonym: "mucosa of organ of anatomical anal canal" EXACT [OBOL:automatic] +synonym: "mucous membrane of anal canal" EXACT [OBOL:automatic] +synonym: "mucous membrane of anal canal viewed anatomically" EXACT [OBOL:automatic] +synonym: "mucous membrane of anal region" EXACT [OBOL:automatic] +synonym: "mucous membrane of anatomical anal canal" EXACT [OBOL:automatic] +synonym: "organ mucosa of anal canal" EXACT [OBOL:automatic] +synonym: "organ mucosa of anal canal viewed anatomically" EXACT [OBOL:automatic] +synonym: "organ mucosa of anal region" EXACT [OBOL:automatic] +synonym: "organ mucosa of anatomical anal canal" EXACT [OBOL:automatic] +xref: EMAPA:27531 +xref: FMA:74654 +xref: http://linkedlifedata.com/resource/umls/id/C0227414 +xref: http://www.snomedbrowser.com/Codes/Details/362170004 +xref: NCIT:C60784 +xref: UMLS:C0227414 {source="ncithesaurus:Anal_Mucosa"} +is_a: UBERON:0001207 ! mucosa of large intestine +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0000159 ! anal canal +relationship: part_of UBERON:0000159 ! anal canal + +[Term] +id: UBERON:0003343 +name: mucosa of oral region +def: "A mucosa that is part of a oral opening [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of oral opening" EXACT [OBOL:automatic] +synonym: "mucosa of oral part of face" EXACT [OBOL:automatic] +synonym: "mucosa of organ of oral opening" EXACT [OBOL:automatic] +synonym: "mucosa of organ of oral part of face" EXACT [OBOL:automatic] +synonym: "mucosa of organ of oral region" EXACT [OBOL:automatic] +synonym: "mucosa of organ of subdivision of mouth" EXACT [OBOL:automatic] +synonym: "mucosa of subdivision of mouth" EXACT [OBOL:automatic] +synonym: "mucous membrane of oral opening" EXACT [OBOL:automatic] +synonym: "mucous membrane of oral part of face" EXACT [OBOL:automatic] +synonym: "mucous membrane of oral region" EXACT [OBOL:automatic] +synonym: "mucous membrane of subdivision of mouth" EXACT [OBOL:automatic] +synonym: "oral opening mucosa" EXACT [OBOL:automatic] +synonym: "oral opening mucosa of organ" EXACT [OBOL:automatic] +synonym: "oral opening mucous membrane" EXACT [OBOL:automatic] +synonym: "oral opening organ mucosa" EXACT [OBOL:automatic] +synonym: "oral part of face mucosa" EXACT [OBOL:automatic] +synonym: "oral part of face mucosa of organ" EXACT [OBOL:automatic] +synonym: "oral part of face mucous membrane" EXACT [OBOL:automatic] +synonym: "oral part of face organ mucosa" EXACT [OBOL:automatic] +synonym: "oral region mucosa" EXACT [OBOL:automatic] +synonym: "oral region mucosa of organ" EXACT [OBOL:automatic] +synonym: "oral region mucous membrane" EXACT [OBOL:automatic] +synonym: "oral region organ mucosa" EXACT [OBOL:automatic] +synonym: "organ mucosa of oral opening" EXACT [OBOL:automatic] +synonym: "organ mucosa of oral part of face" EXACT [OBOL:automatic] +synonym: "organ mucosa of oral region" EXACT [OBOL:automatic] +synonym: "organ mucosa of subdivision of mouth" EXACT [OBOL:automatic] +synonym: "subdivision of mouth mucosa" EXACT [OBOL:automatic] +synonym: "subdivision of mouth mucosa of organ" EXACT [OBOL:automatic] +synonym: "subdivision of mouth mucous membrane" EXACT [OBOL:automatic] +synonym: "subdivision of mouth organ mucosa" EXACT [OBOL:automatic] +xref: EMAPA:26937 +xref: http://www.snomedbrowser.com/Codes/Details/362083000 +is_a: UBERON:0003729 ! mouth mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0000166 ! oral opening +relationship: part_of UBERON:0000166 ! oral opening + +[Term] +id: UBERON:0003346 +name: mucosa of rectum +def: "A mucosa that is part of a rectum [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of organ of rectum" EXACT [OBOL:automatic] +synonym: "mucous membrane of rectum" EXACT [OBOL:automatic] +synonym: "organ mucosa of rectum" EXACT [OBOL:automatic] +synonym: "rectal mucosa" EXACT [FMA:15033] +synonym: "rectal mucous membrane" EXACT [FMA:15033] +synonym: "rectum mucosa" EXACT [OBOL:automatic] +synonym: "rectum mucosa of organ" EXACT [OBOL:automatic] +synonym: "rectum mucous membrane" EXACT [OBOL:automatic] +synonym: "rectum organ mucosa" EXACT [OBOL:automatic] +xref: CALOHA:TS-2107 +xref: EMAPA:27081 +xref: FMA:15033 +xref: http://www.snomedbrowser.com/Codes/Details/362167003 +xref: MA:0003218 +is_a: UBERON:0001207 ! mucosa of large intestine +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001052 ! rectum +relationship: part_of UBERON:0001052 ! rectum + +[Term] +id: UBERON:0003350 +name: epithelium of mucosa +def: "A layer of epithelial cells on the surface of the mucosa." [BTO:0003752] +comment: lies on top of lamina propria +synonym: "lamina epithelialis mucosa" RELATED [BTO:0003752] +synonym: "lamina epithelialis mucosae" RELATED [BTO:0003752] +xref: BTO:0003752 +is_a: UBERON:0000483 ! epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000344 ! mucosa +relationship: part_of UBERON:0000344 ! mucosa + +[Term] +id: UBERON:0003351 +name: pharyngeal epithelium +def: "An epithelium that is part of a pharynx [Automatically generated definition]." [OBOL:automatic] +subset: vertebrate_core +synonym: "epithelial tissue of pharynx" EXACT [OBOL:automatic] +synonym: "epithelium of pharynx" EXACT [OBOL:automatic] +synonym: "pharynx epithelial tissue" EXACT [OBOL:automatic] +synonym: "pharynx epithelium" EXACT [OBOL:automatic] +xref: BSA:0000112 +xref: BTO:0005240 +xref: EMAPA:16708 +xref: MA:0002725 +xref: RETIRED_EHDAA2:0001460 +xref: TAO:0001174 +xref: XAO:0003202 +xref: ZFA:0001174 +is_a: UBERON:0003929 ! digestive tract epithelium +is_a: UBERON:0004807 ! respiratory system epithelium +is_a: UBERON:0005911 ! endo-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001042 ! chordate pharynx +relationship: develops_from UBERON:0007690 {source="ZFA"} ! early pharyngeal endoderm +relationship: part_of UBERON:0001042 {source="ZFA"} ! chordate pharynx + +[Term] +id: UBERON:0003352 +name: epithelium of midgut +def: "An epithelium that is part of a midgut." [OBOL:automatic] +synonym: "epithelial tissue of midgut" EXACT [OBOL:automatic] +synonym: "midgut epithelial tissue" EXACT [OBOL:automatic] +synonym: "midgut epithelium" EXACT [BTO:0005053] +synonym: "midgut epithelium" EXACT [OBOL:automatic] +xref: BTO:0005053 +xref: EHDAA2:0001195 +xref: EMAPA:16569 +xref: MA:0003205 +is_a: UBERON:0003929 ! digestive tract epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001045 ! midgut +relationship: part_of UBERON:0001045 {source="BTO"} ! midgut + +[Term] +id: UBERON:0003353 +name: epithelium of hindgut +def: "An epithelium that is part of a hindgut [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of hindgut" EXACT [OBOL:automatic] +synonym: "hindgut epithelial tissue" EXACT [OBOL:automatic] +synonym: "hindgut epithelium" EXACT [OBOL:automatic] +xref: EHDAA2:0000782 +xref: EMAPA:16717 +xref: MA:0003206 +is_a: UBERON:0003929 ! digestive tract epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001046 ! hindgut +relationship: part_of UBERON:0001046 ! hindgut + +[Term] +id: UBERON:0003354 +name: epithelium of rectum +def: "An epithelium that is part of a rectum [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of rectum" EXACT [OBOL:automatic] +synonym: "rectal epithelium" EXACT [FMA:17510] +synonym: "rectum epithelial tissue" EXACT [OBOL:automatic] +synonym: "rectum epithelium" EXACT [OBOL:automatic] +xref: CALOHA:TS-2066 +xref: EHDAA2:0001594 +xref: EMAPA:17898 +xref: FMA:17510 +xref: MA:0003219 +xref: VHOG:0001037 +is_a: UBERON:0001278 ! epithelium of large intestine +is_a: UBERON:0016885 ! epithelium of terminal part of digestive tract +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001052 ! rectum +relationship: part_of UBERON:0001052 ! rectum + +[Term] +id: UBERON:0003355 +name: epithelium of incisor +def: "An epithelium that is part of a incisor tooth [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of incisor" EXACT [OBOL:automatic] +synonym: "epithelial tissue of incisor tooth" EXACT [OBOL:automatic] +synonym: "epithelium of incisor tooth" EXACT [OBOL:automatic] +synonym: "incisor epithelial tissue" EXACT [OBOL:automatic] +synonym: "incisor epithelium" EXACT [OBOL:automatic] +synonym: "incisor tooth epithelial tissue" EXACT [OBOL:automatic] +synonym: "incisor tooth epithelium" EXACT [OBOL:automatic] +xref: EMAPA:32890 +xref: MA:0003223 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001098 ! incisor tooth +relationship: part_of UBERON:0001098 ! incisor tooth + +[Term] +id: UBERON:0003356 +name: epithelium of nasal septum +def: "An epithelium that is part of a nasal septum [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of nasal septum" EXACT [OBOL:automatic] +synonym: "nasal septum epithelial tissue" EXACT [OBOL:automatic] +synonym: "nasal septum epithelium" EXACT [OBOL:automatic] +xref: EMAPA:18442 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0019306 ! nose epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001706 ! nasal septum +relationship: part_of UBERON:0001706 ! nasal septum + +[Term] +id: UBERON:0003357 +name: epithelium of tongue +def: "An epithelium that is part of a tongue [Automatically generated definition]." [OBOL:automatic] +comment: examples: tongue squamous epithelium, keratined, non-keratinized and parakeratinized epithelium, as well as gustatory epithelium. Note that not all these subtypes are named in individual anatomy ontologies. +subset: pheno_slim +synonym: "epithelial tissue of tongue" EXACT [OBOL:automatic] +synonym: "lingual epithelium" RELATED [BTO:0000992] +synonym: "tongue epithelial tissue" EXACT [OBOL:automatic] +synonym: "tongue epithelium" EXACT [OBOL:automatic] +xref: BTO:0000992 +xref: CALOHA:TS-1051 +xref: EHDAA2:0004598 +xref: EMAPA:17881 +xref: FMA:284658 +xref: http://linkedlifedata.com/resource/umls/id/C1710436 +xref: MA:0001592 +xref: NCIT:C49300 +xref: UMLS:C1710436 {source="ncithesaurus:Tongue_Epithelium"} +is_a: UBERON:0003929 ! digestive tract epithelium +is_a: UBERON:0019304 ! sensory organ epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001723 ! tongue +relationship: contributes_to_morphology_of UBERON:0001723 ! tongue +relationship: part_of UBERON:0001723 ! tongue + +[Term] +id: UBERON:0003358 +name: epithelium of soft palate +def: "An epithelium that is part of a soft palate [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of soft palate" EXACT [OBOL:automatic] +synonym: "soft palate epithelial tissue" EXACT [OBOL:automatic] +synonym: "soft palate epithelium" EXACT [OBOL:automatic] +xref: EMAPA:18950 +is_a: UBERON:0003235 ! epithelium of upper jaw +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001733 ! soft palate +relationship: part_of UBERON:0001733 ! soft palate + +[Term] +id: UBERON:0003359 +name: epithelium of submandibular gland +def: "An epithelium that is part of a submandibular gland [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of submandibular gland" EXACT [OBOL:automatic] +synonym: "submandibular duct epithelium" RELATED [BTO:0004557] +synonym: "submandibular gland duct epithelium" RELATED [BTO:0004557] +synonym: "submandibular gland epithelial tissue" EXACT [OBOL:automatic] +synonym: "submandibular gland epithelium" EXACT [OBOL:automatic] +synonym: "submaxillary gland epithelium" RELATED [EMAPA:18813] +xref: BTO:0004557 +xref: EMAPA:18813 +xref: VHOG:0000989 +is_a: UBERON:0003236 ! epithelium of lower jaw +is_a: UBERON:0004809 ! salivary gland epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001736 ! submandibular gland +relationship: part_of UBERON:0001736 ! submandibular gland + +[Term] +id: UBERON:0003360 +name: epithelium of parotid gland +def: "An epithelium that is part of a parotid gland [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of parotid gland" EXACT [OBOL:automatic] +synonym: "epithelium of parotid" EXACT [OBOL:automatic] +synonym: "epithelium of parotid gland" EXACT [OBOL:automatic] +synonym: "parotid epithelial tissue" EXACT [OBOL:automatic] +synonym: "parotid epithelium" EXACT [OBOL:automatic] +synonym: "parotid gland duct epithelium" RELATED [BTO:0004555] +synonym: "parotid gland epithelial tissue" EXACT [OBOL:automatic] +synonym: "parotid gland epithelium" EXACT [OBOL:automatic] +xref: BTO:0004555 +xref: EMAPA:18538 +xref: VHOG:0001434 +is_a: UBERON:0003236 ! epithelium of lower jaw +is_a: UBERON:0004809 ! salivary gland epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001831 ! parotid gland +relationship: part_of UBERON:0001831 ! parotid gland + +[Term] +id: UBERON:0003361 +name: epithelium of sublingual gland +def: "An epithelium that is part of a sublingual gland [Automatically generated definition]." [OBOL:automatic] +synonym: "ductus sublingualis epithelial tissue" EXACT [OBOL:automatic] +synonym: "ductus sublingualis epithelium" EXACT [OBOL:automatic] +synonym: "epithelial tissue of ductus sublingualis" EXACT [OBOL:automatic] +synonym: "epithelial tissue of Rivinus'gland" EXACT [OBOL:automatic] +synonym: "epithelial tissue of sublingual gland" EXACT [OBOL:automatic] +synonym: "epithelium of ductus sublingualis" EXACT [OBOL:automatic] +synonym: "epithelium of Rivinus'gland" EXACT [OBOL:automatic] +synonym: "Rivinus'gland epithelial tissue" EXACT [OBOL:automatic] +synonym: "Rivinus'gland epithelium" EXACT [OBOL:automatic] +synonym: "sublingual duct epithelium" RELATED [BTO:0004559] +synonym: "sublingual gland duct epithelium" RELATED [BTO:0004559] +synonym: "sublingual gland epithelial tissue" EXACT [OBOL:automatic] +synonym: "sublingual gland epithelium" EXACT [OBOL:automatic] +xref: BTO:0004559 +xref: EMAPA:18810 +xref: VHOG:0001098 +is_a: UBERON:0004809 ! salivary gland epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001832 ! sublingual gland +relationship: part_of UBERON:0001832 ! sublingual gland + +[Term] +id: UBERON:0003362 +name: epithelium of endolymphatic duct +def: "An epithelium that is part of a endolymphatic duct [Automatically generated definition]." [OBOL:automatic] +synonym: "endolymphatic duct epithelial tissue" EXACT [OBOL:automatic] +synonym: "endolymphatic duct epithelium" EXACT [OBOL:automatic] +synonym: "epithelial tissue of endolymphatic duct" EXACT [OBOL:automatic] +xref: EMAPA:18582 +is_a: UBERON:0006937 ! inner ear epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001860 ! endolymphatic duct +relationship: part_of UBERON:0001860 ! endolymphatic duct + +[Term] +id: UBERON:0003363 +name: epithelium of ductus reuniens +def: "An epithelium that is part of a ductus reuniens [Automatically generated definition]." [OBOL:automatic] +synonym: "ductus reuniens epithelial tissue" EXACT [OBOL:automatic] +synonym: "ductus reuniens epithelium" EXACT [OBOL:automatic] +synonym: "epithelial tissue of ductus reuniens" EXACT [OBOL:automatic] +xref: EMAPA:17289 +is_a: UBERON:0006932 ! vestibular epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001861 ! ductus reuniens +relationship: part_of UBERON:0001861 ! ductus reuniens + +[Term] +id: UBERON:0003364 +name: epithelium of right lung +def: "An epithelium that is part of a right lung [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of right lung" EXACT [OBOL:automatic] +synonym: "right lung epithelial tissue" EXACT [OBOL:automatic] +synonym: "right lung epithelium" EXACT [OBOL:automatic] +xref: EMAPA:17663 +xref: MA:0003132 +is_a: UBERON:0000115 ! lung epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002167 ! right lung +relationship: part_of UBERON:0002167 ! right lung + +[Term] +id: UBERON:0003365 +name: epithelium of left lung +def: "An epithelium that is part of a left lung [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of left lung" EXACT [OBOL:automatic] +synonym: "left lung epithelial tissue" EXACT [OBOL:automatic] +synonym: "left lung epithelium" EXACT [OBOL:automatic] +xref: EMAPA:17655 +xref: MA:0003131 +is_a: UBERON:0000115 ! lung epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002168 ! left lung +relationship: part_of UBERON:0002168 ! left lung + +[Term] +id: UBERON:0003366 +name: epithelium of uterine horn +def: "An epithelium that is part of a uterine horn [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of uterine horn" EXACT [OBOL:automatic] +synonym: "uterine horn epithelial tissue" EXACT [OBOL:automatic] +synonym: "uterine horn epithelium" EXACT [OBOL:automatic] +xref: EMAPA:29030 +is_a: UBERON:0006955 ! uterine epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002247 ! uterine horn +relationship: part_of UBERON:0002247 ! uterine horn + +[Term] +id: UBERON:0003367 +name: epithelium of vomeronasal organ +def: "An epithelium that is part of a vomeronasal organ [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of Jacobson's organ" EXACT [OBOL:automatic] +synonym: "epithelial tissue of vomeronasal organ" EXACT [OBOL:automatic] +synonym: "epithelium of Jacobson's organ" EXACT [OBOL:automatic] +synonym: "Jacobson's organ epithelial tissue" EXACT [OBOL:automatic] +synonym: "Jacobson's organ epithelium" EXACT [OBOL:automatic] +synonym: "vomeronasal epithelium" EXACT [EHDAA2:0004102] +synonym: "vomeronasal organ epithelial tissue" EXACT [OBOL:automatic] +synonym: "vomeronasal organ epithelium" EXACT [OBOL:automatic] +synonym: "vomeronasal organ sensory epithelium" EXACT [MA:0001328] +xref: EHDAA2:0004102 +xref: EMAPA:18444 +xref: FMA:301283 +xref: MA:0001328 +is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0019306 ! nose epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002255 ! vomeronasal organ +relationship: develops_from UBERON:0001997 {source="EHDAA2"} ! olfactory epithelium +relationship: part_of UBERON:0002255 ! vomeronasal organ + +[Term] +id: UBERON:0003368 +name: epithelium of hard palate +def: "An epithelium that is part of a hard palate [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of hard palate" EXACT [OBOL:automatic] +synonym: "hard palate epithelial tissue" EXACT [OBOL:automatic] +synonym: "hard palate epithelium" EXACT [OBOL:automatic] +xref: EMAPA:18953 +is_a: UBERON:0003235 ! epithelium of upper jaw +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0003216 ! hard palate +relationship: part_of UBERON:0003216 ! hard palate + +[Term] +id: UBERON:0003369 +name: fossa ovalis of heart +def: "Found in the right atrium of the heart, the fossa ovalis is an embryonic remnant of the foramen ovale, which normally closes shortly after birth. In a heart specimen of a neonate, the fossa ovalis is translucent, but later in life the membrane thickens." [http://en.wikipedia.org/wiki/Fossa_ovalis_(heart)] +synonym: "fossa ovalis" EXACT [FMA:9246] +synonym: "oval fossa" EXACT [FMA:9246] +xref: FMA:9246 +xref: http://en.wikipedia.org/wiki/Fossa_ovalis_(heart) +xref: http://www.snomedbrowser.com/Codes/Details/277719009 +is_a: UBERON:0036215 ! anatomical surface region +relationship: develops_from UBERON:0004754 {source="Wikipedia"} ! foramen ovale of heart +relationship: part_of UBERON:0002078 ! right cardiac atrium + +[Term] +id: UBERON:0003371 +name: pelvic appendage bud ectoderm +alt_id: UBERON:0005232 +def: "An unilaminar epithelium that surrounds a pelvic appendage bud." [OBOL:automatic] +synonym: "hindlimb bud ectoderm" NARROW SENSU [EMAPA:16780] +synonym: "hindlimb bud ectoderm" NARROW SENSU [] +synonym: "hindlimb ectoderm" EXACT [VHOG:0001048] +synonym: "hindlimb ectoderm" NARROW SENSU [VHOG:0001048] +synonym: "leg ectoderm" RELATED [OBOL:automatic] +synonym: "lower limb bud ectoderm" NARROW SENSU [EHDAA2:0001034] +synonym: "pelvic fin bud ectoderm" NARROW SENSU [] +xref: EHDAA2:0001034 +xref: EMAPA:16780 +xref: VHOG:0001048 +is_a: UBERON:0000490 ! unilaminar epithelium +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000490 ! unilaminar epithelium +intersection_of: bounding_layer_of UBERON:0005420 ! pelvic appendage bud +relationship: bounding_layer_of UBERON:0005420 ! pelvic appendage bud +relationship: develops_from UBERON:0000076 {source="EHDAA2"} ! external ectoderm +relationship: part_of UBERON:0000076 {source="EHDAA2"} ! external ectoderm +relationship: part_of UBERON:0005420 ! pelvic appendage bud + +[Term] +id: UBERON:0003372 +name: pectoral appendage bud ectoderm +alt_id: UBERON:0005231 +alt_id: UBERON:0005663 +def: "An unilaminar epithelium that surrounds a pectoral appendage bud." [OBOL:automatic] +synonym: "arm ectoderm" RELATED [OBOL:automatic] +synonym: "forelimb bud ectoderm" NARROW SENSU [EMAPA:16407] +synonym: "forelimb bud ectoderm" NARROW SENSU [] +synonym: "forelimb ectoderm" NARROW SENSU [VHOG:0001047] +synonym: "pectoral fin bud ectoderm" NARROW SENSU [] +synonym: "upper limb bud ectoderm" NARROW SENSU [EHDAA2:0002134] +synonym: "wing ectoderm" NARROW SENSU [Geisha:syn, NCBITaxon:8782] +xref: EHDAA2:0002134 +xref: EMAPA:16407 +xref: VHOG:0001047 +is_a: UBERON:0000490 ! unilaminar epithelium +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000490 ! unilaminar epithelium +intersection_of: bounding_layer_of UBERON:0005419 ! pectoral appendage bud +relationship: bounding_layer_of UBERON:0005419 ! pectoral appendage bud +relationship: develops_from UBERON:0000076 {source="EHDAA2"} ! external ectoderm +relationship: part_of UBERON:0000076 {source="EHDAA2"} ! external ectoderm +relationship: part_of UBERON:0005419 ! pectoral appendage bud + +[Term] +id: UBERON:0003373 +name: ectoderm of footplate +def: "An ectoderm that is part of a footplate." [OBOL:automatic] +xref: EMAPA:17250 +is_a: UBERON:0000924 ! ectoderm +intersection_of: UBERON:0000924 ! ectoderm +intersection_of: part_of UBERON:0006871 ! embryonic footplate +relationship: part_of UBERON:0006871 ! embryonic footplate + +[Term] +id: UBERON:0003374 +name: chorionic ectoderm +def: "A extraembryonic structure that develops_from a ectoderm and is part of a chorion." [OBOL:automatic] +synonym: "chorion ectoderm" EXACT [OBOL:automatic] +synonym: "chorion epithelium" RELATED [] +synonym: "chorionic epithelium" RELATED [BTO:0005145] +xref: BTO:0005145 +xref: EMAPA:16113 +is_a: UBERON:0000478 ! extraembryonic structure +intersection_of: UBERON:0000478 ! extraembryonic structure +intersection_of: develops_from UBERON:0000924 ! ectoderm +intersection_of: part_of UBERON:0003124 ! chorion membrane +relationship: develops_from UBERON:0000924 {source="ISBN:0073040584"} ! ectoderm +relationship: part_of UBERON:0003124 ! chorion membrane + +[Term] +id: UBERON:0003378 +name: cardiac muscle of auricular region +def: "A cardiac muscle tissue that is part of a atrium auricular region." [OBOL:automatic] +synonym: "atrium auricular region cardiac muscle" EXACT [EMAPA:36056] +synonym: "auricular region heart muscle" EXACT [] +synonym: "cardiac muscle tissue of auricle" EXACT [FMA:84279] +xref: EMAPA:36056 +xref: FMA:84279 +is_a: UBERON:0004490 ! cardiac muscle tissue of atrium +intersection_of: UBERON:0001133 ! cardiac muscle tissue +intersection_of: part_of UBERON:0006618 ! atrium auricular region +relationship: part_of UBERON:0006618 ! atrium auricular region + +[Term] +id: UBERON:0003379 +name: cardiac muscle of right atrium +def: "A portion of cardiac muscle tissue that is part of a right atrium [Automatically generated definition]." [OBOL:automatic] +synonym: "cardiac muscle of cardiac right atrium" EXACT [OBOL:automatic] +synonym: "cardiac muscle of heart right atrium" EXACT [OBOL:automatic] +synonym: "cardiac muscle tissue of heart right atrium" EXACT [OBOL:automatic] +synonym: "cardiac muscle tissue of right atrium" EXACT [OBOL:automatic] +synonym: "cardiac muscle tissue of right atrium of heart" EXACT [OBOL:automatic] +synonym: "myocardium of right atrium" EXACT [] +synonym: "right atrium heart muscle" EXACT [EHDAA2:0004155] +synonym: "right atrium myocardium" EXACT [VHOG:0001227] +synonym: "textus muscularis of myocardium of right atrium" EXACT [OBOL:automatic] +synonym: "textus muscularis of myocardium of right atrium of heart" EXACT [OBOL:automatic] +synonym: "textus muscularis of myocardium of right cardiac atrium" EXACT [OBOL:automatic] +xref: EHDAA2:0004155 +xref: EMAPA:17326 +xref: FMA:7282 +xref: http://www.snomedbrowser.com/Codes/Details/362018002 +xref: VHOG:0001227 +is_a: UBERON:0004490 ! cardiac muscle tissue of atrium +intersection_of: UBERON:0001133 ! cardiac muscle tissue +intersection_of: part_of UBERON:0002078 ! right cardiac atrium +relationship: part_of UBERON:0002078 ! right cardiac atrium + +[Term] +id: UBERON:0003380 +name: cardiac muscle of left atrium +def: "A portion of cardiac muscle tissue that is part of a left atrium [Automatically generated definition]." [OBOL:automatic] +synonym: "cardiac left atrium cardiac muscle" EXACT [OBOL:automatic] +synonym: "cardiac left atrium cardiac muscle tissue" EXACT [OBOL:automatic] +synonym: "cardiac muscle of cardiac left atrium" EXACT [OBOL:automatic] +synonym: "cardiac muscle of heart left atrium" EXACT [OBOL:automatic] +synonym: "cardiac muscle of left atrium of heart" EXACT [OBOL:automatic] +synonym: "left atrium heart muscle" EXACT [EHDAA2:0004154] +synonym: "left atrium myocardium" EXACT [VHOG:0001225] +synonym: "myocardium of left atrium" EXACT [] +synonym: "textus muscularis of myocardium of cardiac left atrium" EXACT [OBOL:automatic] +synonym: "textus muscularis of myocardium of heart left atrium" EXACT [OBOL:automatic] +synonym: "textus muscularis of myocardium of left atrium" EXACT [OBOL:automatic] +synonym: "textus muscularis of myocardium of left atrium of heart" EXACT [OBOL:automatic] +synonym: "textus muscularis of myocardium of left cardiac atrium" EXACT [OBOL:automatic] +xref: EHDAA2:0004154 +xref: EMAPA:17320 +xref: FMA:7285 +xref: http://www.snomedbrowser.com/Codes/Details/189936008 +xref: VHOG:0001225 +is_a: UBERON:0004490 ! cardiac muscle tissue of atrium +intersection_of: UBERON:0001133 ! cardiac muscle tissue +intersection_of: part_of UBERON:0002079 ! left cardiac atrium +relationship: part_of UBERON:0002079 ! left cardiac atrium + +[Term] +id: UBERON:0003381 +name: cardiac muscle of right ventricle +def: "A portion of cardiac muscle tissue that is part of a right ventricle [Automatically generated definition]." [OBOL:automatic] +synonym: "cardiac muscle tissue of right ventricle" EXACT [FMA:83452] +synonym: "right ventricle cardiac muscle" RELATED [VHOG:0001236] +synonym: "right ventricular cardiac muscle tissue" EXACT [GO:0003221] +xref: EMAPA:17342 +xref: FMA:83452 +xref: VHOG:0001236 +is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle +intersection_of: UBERON:0001133 ! cardiac muscle tissue +intersection_of: part_of UBERON:0002080 ! heart right ventricle +relationship: part_of UBERON:0002080 ! heart right ventricle + +[Term] +id: UBERON:0003382 +name: cardiac muscle of left ventricle +def: "A portion of cardiac muscle tissue that is part of a left ventricle [Automatically generated definition]." [OBOL:automatic] +synonym: "cardiac muscle tissue of left ventricle" EXACT [FMA:83453] +synonym: "left ventricle cardiac muscle" RELATED [VHOG:0001234] +synonym: "left ventricular cardiac muscle tissue" EXACT [GO:0003220] +xref: EMAPA:17339 +xref: FMA:83453 +xref: VHOG:0001234 +is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle +intersection_of: UBERON:0001133 ! cardiac muscle tissue +intersection_of: part_of UBERON:0002084 ! heart left ventricle +relationship: part_of UBERON:0002084 ! heart left ventricle + +[Term] +id: UBERON:0003383 +name: cardiac muscle tissue of interventricular septum +def: "A portion of cardiac muscle tissue that is part of an interventricular septum [Automatically generated definition]." [OBOL:automatic] +synonym: "cardiac muscle of interventricular septum" EXACT [] +synonym: "cardiac muscle tissue of interventricular septum" EXACT [FMA:84084] +synonym: "interventricular septum cardiac muscle" EXACT [VHOG:0000999] +synonym: "interventricular septum heart muscle" EXACT [EHDAA2:0004158] +synonym: "interventricular septum muscle" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "interventricular septum myocardium" EXACT [VHOG:0000999] +xref: EHDAA2:0004158 +xref: EMAPA:17335 +xref: FMA:84084 +xref: VHOG:0000999 +is_a: UBERON:0004492 ! cardiac muscle tissue of cardiac septum +is_a: UBERON:0004667 ! interventricular septum muscular part +intersection_of: UBERON:0001133 ! cardiac muscle tissue +intersection_of: part_of UBERON:0002094 ! interventricular septum + +[Term] +id: UBERON:0003384 +name: skeletal muscle tissue of pharynx +def: "A portion of skeletal muscle tissue that is part of a pharynx [Automatically generated definition]." [OBOL:automatic] +synonym: "pharynx skeletal muscle" EXACT [OBOL:automatic] +synonym: "pharynx skeletal muscle tissue" EXACT [OBOL:automatic] +synonym: "skeletal muscle tissue of pharynx" EXACT [OBOL:automatic] +xref: EMAPA:18963 +is_a: UBERON:0004830 ! respiratory system skeletal muscle +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0001042 ! chordate pharynx +relationship: part_of UBERON:0001042 ! chordate pharynx + +[Term] +id: UBERON:0003385 +name: obsolete skeletal muscle of mesenchyme +is_obsolete: true +consider: EMAPA:19107 +consider: EMAPA:19144 + +[Term] +id: UBERON:0003386 +name: smooth muscle of eye +def: "any of the striated muscles that move the eye and include: superior rectus, inferior rectus, medial rectus, lateral rectus, superior oblique, inferior oblique, retractor bulbi" [MGI:cwg, MP:0005247] +subset: pheno_slim +synonym: "ocular smooth muscle" EXACT [MA:0001268] +xref: EMAPA:18807 +xref: MA:0001268 +is_a: UBERON:0001135 ! smooth muscle tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0000019 ! camera-type eye +relationship: contributes_to_morphology_of UBERON:0001015 ! musculature +relationship: part_of UBERON:0000019 ! camera-type eye + +[Term] +id: UBERON:0003387 +name: smooth muscle of trachea +alt_id: UBERON:0004244 +def: "A portion of smooth muscle tissue that is part of a trachea [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "trachea smooth muscle" EXACT [MA:0001863] +synonym: "tracheal smooth muscle" EXACT [BTO:0001391] +xref: BTO:0001391 +xref: EMAPA:19192 +xref: FMA:262010 +xref: http://linkedlifedata.com/resource/umls/id/C1710458 +xref: MA:0001863 +xref: NCIT:C49306 +xref: UMLS:C1710458 {source="ncithesaurus:Trachea_Smooth_Muscle_Tissue"} +is_a: UBERON:0004233 ! lower respiratory tract smooth muscle +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0003126 ! trachea +relationship: contributes_to_morphology_of UBERON:0003126 ! trachea +relationship: part_of UBERON:0003126 ! trachea + +[Term] +id: UBERON:0003388 +name: mesothelium of pericardial cavity +def: "A mesothelium that is part of a pericardium [Automatically generated definition]." [OBOL:automatic] +synonym: "cavity of pericardial sac meso-epithelium" EXACT [OBOL:automatic] +synonym: "cavity of pericardial sac mesothelium" EXACT [OBOL:automatic] +synonym: "meso-epithelium of cavity of pericardial sac" EXACT [OBOL:automatic] +synonym: "meso-epithelium of pericardial cavity" EXACT [OBOL:automatic] +synonym: "mesothelium of cavity of pericardial sac" EXACT [OBOL:automatic] +synonym: "pericardial cavity meso-epithelium" EXACT [OBOL:automatic] +synonym: "pericardial cavity mesothelium" EXACT [OBOL:automatic] +xref: RETIRED_EHDAA2:0001436 +is_a: UBERON:0001136 ! mesothelium +intersection_of: UBERON:0001136 ! mesothelium +intersection_of: part_of UBERON:0002407 ! pericardium +relationship: part_of UBERON:0002407 ! pericardium + +[Term] +id: UBERON:0003389 +name: mesothelium of diaphragm +def: "A mesothelium that is part of a diaphragm [Automatically generated definition]." [OBOL:automatic] +synonym: "diaphragm meso-epithelium" EXACT [OBOL:automatic] +synonym: "diaphragm mesothelium" EXACT [OBOL:automatic] +synonym: "meso-epithelium of diaphragm" EXACT [OBOL:automatic] +synonym: "meso-epithelium of thoracic diaphragm" EXACT [OBOL:automatic] +synonym: "mesothelium of thoracic diaphragm" EXACT [OBOL:automatic] +synonym: "thoracic diaphragm meso-epithelium" EXACT [OBOL:automatic] +synonym: "thoracic diaphragm mesothelium" EXACT [OBOL:automatic] +xref: EMAPA:18429 +is_a: UBERON:0001136 ! mesothelium +is_a: UBERON:0004807 ! respiratory system epithelium +intersection_of: UBERON:0001136 ! mesothelium +intersection_of: part_of UBERON:0001103 ! diaphragm +relationship: part_of UBERON:0001103 ! diaphragm + +[Term] +id: UBERON:0003390 +name: mesothelium of pleural cavity +def: "A mesothelium that is part of a pleural cavity [Automatically generated definition]." [OBOL:automatic] +synonym: "meso-epithelium of pleural cavity" EXACT [OBOL:automatic] +synonym: "mesothelium of pleura" EXACT [FMA:18148] +synonym: "pleura" RELATED [EMAPA:16775] +synonym: "pleural cavity meso-epithelium" EXACT [OBOL:automatic] +synonym: "pleural cavity mesothelium" EXACT [OBOL:automatic] +synonym: "pleural mesothelium" EXACT [EMAPA:16775] +xref: BTO:0003155 +xref: EHDAA2:0001476 +xref: EMAPA:16775 +xref: FMA:18148 +is_a: UBERON:0001136 ! mesothelium +intersection_of: UBERON:0001136 ! mesothelium +intersection_of: located_in UBERON:0002402 ! pleural cavity +relationship: located_in UBERON:0002402 ! pleural cavity + +[Term] +id: UBERON:0003393 +name: mesentery of urinary system +def: "A mesentery that is part of a urinary system [Automatically generated definition]." [OBOL:automatic] +synonym: "excretory system mesentery" EXACT [OBOL:automatic] +synonym: "mesentery of excretory system" EXACT [OBOL:automatic] +synonym: "mesentery of renal system" EXACT [OBOL:automatic] +synonym: "mesentery of systema urinaria" EXACT [OBOL:automatic] +synonym: "renal system mesentery" EXACT [OBOL:automatic] +synonym: "systema urinaria mesentery" EXACT [OBOL:automatic] +synonym: "urinary system mesentery" EXACT [OBOL:automatic] +xref: EMAPA:17367 +xref: MA:0003233 +is_a: UBERON:0002095 ! mesentery +intersection_of: UBERON:0002095 ! mesentery +intersection_of: part_of UBERON:0001008 ! renal system +relationship: part_of UBERON:0001008 ! renal system + +[Term] +id: UBERON:0003394 +name: mesentery of hindgut +def: "A mesentery that is part of a hindgut [Automatically generated definition]." [OBOL:automatic] +synonym: "hindgut mesentery" EXACT [OBOL:automatic] +xref: EMAPA:16718 +is_a: UBERON:0002095 ! mesentery +intersection_of: UBERON:0002095 ! mesentery +intersection_of: part_of UBERON:0001046 ! hindgut +relationship: part_of UBERON:0001046 ! hindgut + +[Term] +id: UBERON:0003395 +name: mesentery of rectum +def: "A mesentery that is part of a rectum [Automatically generated definition]." [OBOL:automatic] +synonym: "rectum mesentery" EXACT [OBOL:automatic] +xref: EMAPA:18664 +is_a: UBERON:0003334 ! serosa of rectum +is_a: UBERON:0004854 ! gastrointestinal system mesentery +intersection_of: UBERON:0002095 ! mesentery +intersection_of: part_of UBERON:0001052 ! rectum + +[Term] +id: UBERON:0003396 +name: mesentery of colon +def: "A mesentery that is part of a colon [Automatically generated definition]." [OBOL:automatic] +synonym: "colon mesentery" EXACT [OBOL:automatic] +synonym: "large bowel mesentery" EXACT [OBOL:automatic] +synonym: "large intestinal mesentery" EXACT [FMA:14645] +synonym: "mesentery of large bowel" EXACT [OBOL:automatic] +synonym: "mesentery of large intestine" EXACT [FMA:14645] +synonym: "mesocolon" EXACT [https://github.com/obophenotype/uberon/issues/1473] +xref: EMAPA:18942 +xref: FMA:14645 +xref: http://www.snomedbrowser.com/Codes/Details/245457004 +is_a: UBERON:0003335 ! serosa of colon +is_a: UBERON:0004854 ! gastrointestinal system mesentery +is_a: UBERON:0007826 {source="FMA"} ! peritoneal mesentery +intersection_of: UBERON:0002095 ! mesentery +intersection_of: part_of UBERON:0001155 ! colon + +[Term] +id: UBERON:0003397 +name: mesentery of duodenum +def: "A mesentery that is part of a duodenum [Automatically generated definition]." [OBOL:automatic] +synonym: "duodenum mesentery" EXACT [OBOL:automatic] +xref: EMAPA:19081 +is_a: UBERON:0001170 ! mesentery of small intestine +is_a: UBERON:0003336 ! serosa of duodenum +intersection_of: UBERON:0002095 ! mesentery +intersection_of: part_of UBERON:0002114 ! duodenum + +[Term] +id: UBERON:0003398 +name: mesentery of jejunum +def: "A mesentery that is part of a jejunum [Automatically generated definition]." [OBOL:automatic] +synonym: "jejunal mesentery" EXACT [] +synonym: "jejunum mesentery" EXACT [] +synonym: "mesojejunum" EXACT [http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html] +xref: EMAPA:18670 +xref: FMA:14651 +xref: http://www.snomedbrowser.com/Codes/Details/261286003 +is_a: UBERON:0001170 ! mesentery of small intestine +is_a: UBERON:0003337 ! serosa of jejunum +intersection_of: UBERON:0002095 ! mesentery +intersection_of: part_of UBERON:0002115 ! jejunum + +[Term] +id: UBERON:0003403 +name: skin of forearm +def: "A zone of skin that is part of a lower arm [Automatically generated definition]." [OBOL:automatic] +synonym: "forearm skin" EXACT [FMA:38265] +synonym: "lower arm skin" EXACT [OBOL:automatic] +synonym: "lower segment of arm skin" EXACT [OBOL:automatic] +synonym: "skin of antebrachial region" EXACT [OBOL:automatic] +synonym: "skin of lower arm" EXACT [OBOL:automatic] +synonym: "skin of lower segment of arm" EXACT [OBOL:automatic] +synonym: "skin of zeugopod of arm" EXACT [OBOL:automatic] +xref: EMAPA:18056 +xref: FMA:38265 +xref: http://www.snomedbrowser.com/Codes/Details/181537008 +xref: MA:0000602 +is_a: UBERON:0002427 ! arm skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0002386 ! forelimb zeugopod +relationship: part_of UBERON:0002386 ! forelimb zeugopod + +[Term] +id: UBERON:0003404 +name: lobar bronchus of right lung +def: "A lobar bronchus that is part of a right lung [Automatically generated definition]." [OBOL:automatic] +synonym: "right lobar bronchus" EXACT [OBOL:automatic] +synonym: "right lung lobar bronchus" EXACT [OBOL:automatic] +synonym: "right lung secondary bronchus" EXACT [OBOL:automatic] +synonym: "secondary bronchus of right lung" EXACT [OBOL:automatic] +xref: EMAPA:17664 +xref: http://www.snomedbrowser.com/Codes/Details/245511004 +xref: MA:0003134 +is_a: UBERON:0002183 ! lobar bronchus +intersection_of: UBERON:0002183 ! lobar bronchus +intersection_of: part_of UBERON:0002167 ! right lung +relationship: part_of UBERON:0006518 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! right lung lobe + +[Term] +id: UBERON:0003405 +name: lobar bronchus of left lung +def: "A lobar bronchus that is part of a left lung [Automatically generated definition]." [OBOL:automatic] +synonym: "left lobar bronchus" EXACT [OBOL:automatic] +synonym: "left lung lobar bronchus" EXACT [OBOL:automatic] +synonym: "left lung secondary bronchus" EXACT [OBOL:automatic] +synonym: "secondary bronchus of left lung" EXACT [OBOL:automatic] +xref: EMAPA:17388 +xref: EMAPA:17656 +xref: http://www.snomedbrowser.com/Codes/Details/245510003 +xref: MA:0003133 +is_a: UBERON:0002183 ! lobar bronchus +intersection_of: UBERON:0002183 ! lobar bronchus +intersection_of: part_of UBERON:0002168 ! left lung +relationship: part_of UBERON:0008951 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! left lung lobe + +[Term] +id: UBERON:0003406 +name: cartilage of respiratory system +def: "A cartilage element that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +synonym: "apparatus respiratorius cartilage" EXACT [OBOL:automatic] +synonym: "cartilage of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "respiratory system cartilage" EXACT [OBOL:automatic] +xref: EMAPA:18694 +xref: MA:0001818 +is_a: UBERON:0007844 ! cartilage element +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0003407 +name: cartilage of nasal septum +def: "A cartilage that is part of a nasal septum [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "cartilago septal nasi" EXACT [FMA:59503] +synonym: "nasal septum cartilage" EXACT [OBOL:automatic] +synonym: "septal nasal cartilage" EXACT [FMA:59503] +xref: EMAPA:25091 +xref: FMA:59503 +xref: MA:0003138 +is_a: UBERON:0001823 ! nasal cartilage +is_a: UBERON:0003932 ! cartilage element of chondrocranium +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0001706 ! nasal septum +relationship: part_of UBERON:0001706 ! nasal septum + +[Term] +id: UBERON:0003408 +name: gland of digestive tract +def: "A gland that is part of a digestive tract [Automatically generated definition]." [OBOL:automatic] +synonym: "digestive tract gland" EXACT [OBOL:automatic] +synonym: "gland of digestive tract" EXACT [OBOL:automatic] +synonym: "gland of lower gastrointestinal tract" EXACT [OBOL:automatic] +synonym: "gut gland" EXACT [MA:0003202] +synonym: "lower gastrointestinal tract gland" EXACT [OBOL:automatic] +xref: EMAPA:18815 +xref: MA:0003202 +is_a: UBERON:0002530 ! gland +is_a: UBERON:0013765 ! digestive system element +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0001555 ! digestive tract +relationship: part_of UBERON:0001555 ! digestive tract + +[Term] +id: UBERON:0003409 +name: gland of tongue +def: "Any of the mucous, serous, or mixed glands that empty their secretions onto the surface of the tongue." [http://www.merriam-webster.com/medical/lingual%20gland] +synonym: "lingual gland" EXACT [OBOL:automatic] +synonym: "tongue gland" EXACT [OBOL:automatic] +xref: EMAPA:25097 +is_a: UBERON:0010047 ! oral gland +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0001723 ! tongue +relationship: part_of UBERON:0001723 ! tongue + +[Term] +id: UBERON:0003410 +name: oropharyngeal gland +def: "A gland that is part of a oropharynx [Automatically generated definition]." [OBOL:automatic] +subset: organ_slim +synonym: "gland of oral part of pharynx" EXACT [OBOL:automatic] +synonym: "gland of oropharynx" EXACT [EMAPA:25095] +synonym: "oral part of pharynx gland" EXACT [OBOL:automatic] +synonym: "oropharynx gland" EXACT [OBOL:automatic] +xref: EMAPA:25095 +is_a: UBERON:0003295 ! pharyngeal gland +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0001729 ! oropharynx +relationship: part_of UBERON:0001729 ! oropharynx + +[Term] +id: UBERON:0003412 +name: pelvic appendage bud mesenchyme +def: "Mesenchyme that is part of a pelvic appendage bud." [OBOL:automatic] +synonym: "hindlimb bud mesenchyme" NARROW SENSU [EMAPA:16781] +synonym: "leg mesenchyme" EXACT [OBOL:automatic] +synonym: "lower limb bud mesenchyme" EXACT [EHDAA2:0001035] +synonym: "mesoderm pelvic fin bud" NARROW SENSU [ZFA:0001386] +synonym: "pelvic fin bud mesenchyme" NARROW SENSU [] +xref: EHDAA2:0001035 +xref: EMAPA:16781 +xref: TAO:0001386 +xref: ZFA:0001386 +is_a: UBERON:0010329 ! paired limb/fin bud mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0005420 ! pelvic appendage bud +relationship: develops_from UBERON:0005730 ! pelvic appendage field +relationship: part_of UBERON:0005420 ! pelvic appendage bud + +[Term] +id: UBERON:0003413 +name: pectoral appendage bud mesenchyme +alt_id: UBERON:0005703 +def: "Mesenchyme that is part of a pectoral appendage bud." [OBOL:automatic] +synonym: "arm mesenchyme" NARROW [OBOL:automatic] +synonym: "forelimb bud mesenchyme" NARROW SENSU [EMAPA:16408] +synonym: "mesoderm pectoral fin bud" NARROW SENSU [ZFA:0000789] +synonym: "pectoral fin bud mesenchyme" NARROW SENSU [] +synonym: "upper limb bud mesenchyme" NARROW [EHDAA2:0002135] +synonym: "wing mesenchyme" NARROW [OBOL:automatic] +xref: EHDAA2:0002135 +xref: EHDAA:1703 +xref: EMAPA:16408 +xref: TAO:0000789 +xref: ZFA:0000789 +is_a: UBERON:0010329 ! paired limb/fin bud mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0005419 ! pectoral appendage bud +relationship: develops_from UBERON:0005729 ! pectoral appendage field +relationship: part_of UBERON:0005419 ! pectoral appendage bud + +[Term] +id: UBERON:0003414 +name: mesenchyme of mandible +def: "Mesenchyme that is part of a developing mandible [Automatically generated definition]." [OBOL:automatic] +synonym: "bone of lower jaw mesenchyme" EXACT [OBOL:automatic] +synonym: "bone of ventral mandibular arch mesenchyme" EXACT [OBOL:automatic] +synonym: "bone organ of lower jaw mesenchyme" EXACT [OBOL:automatic] +synonym: "bone organ of ventral mandibular arch mesenchyme" EXACT [OBOL:automatic] +synonym: "lower jaw bone mesenchyme" EXACT [OBOL:automatic] +synonym: "lower jaw bone organ mesenchyme" EXACT [OBOL:automatic] +synonym: "mandible mesenchyme" EXACT [OBOL:automatic] +synonym: "mandibulla mesenchyme" EXACT [OBOL:automatic] +synonym: "mesenchyme of bone of lower jaw" EXACT [OBOL:automatic] +synonym: "mesenchyme of bone of ventral mandibular arch" EXACT [OBOL:automatic] +synonym: "mesenchyme of bone organ of lower jaw" EXACT [OBOL:automatic] +synonym: "mesenchyme of bone organ of ventral mandibular arch" EXACT [OBOL:automatic] +synonym: "mesenchyme of lower jaw bone" EXACT [OBOL:automatic] +synonym: "mesenchyme of lower jaw bone organ" EXACT [OBOL:automatic] +synonym: "mesenchyme of mandibulla" EXACT [OBOL:automatic] +synonym: "mesenchyme of ventral mandibular arch bone" EXACT [OBOL:automatic] +synonym: "mesenchyme of ventral mandibular arch bone organ" EXACT [OBOL:automatic] +synonym: "ventral mandibular arch bone mesenchyme" EXACT [OBOL:automatic] +synonym: "ventral mandibular arch bone organ mesenchyme" EXACT [OBOL:automatic] +xref: EMAPA:17912 +is_a: UBERON:0003324 ! mesenchyme of lower jaw +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001684 ! mandible +relationship: part_of UBERON:0001684 ! mandible + +[Term] +id: UBERON:0003415 +name: mesenchyme of nasal septum +def: "Mesenchyme that is part of a developing nasal septum [Automatically generated definition]." [OBOL:automatic] +synonym: "nasal septum mesenchyme" EXACT [OBOL:automatic] +xref: EMAPA:18443 +xref: FMA:312700 +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001706 ! nasal septum +relationship: part_of UBERON:0001706 ! nasal septum + +[Term] +id: UBERON:0003416 +name: mesenchyme of tongue +def: "Mesenchyme that is part of a developing tongue [Automatically generated definition]." [OBOL:automatic] +synonym: "tongue mesenchyme" EXACT [EHDAA2:0004614] +xref: EHDAA2:0004614 +xref: EMAPA:17882 +is_a: UBERON:0005253 ! head mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001723 ! tongue +relationship: part_of UBERON:0001723 ! tongue + +[Term] +id: UBERON:0003417 +name: mesenchyme of soft palate +def: "Mesenchyme that is part of a developing soft palate [Automatically generated definition]." [OBOL:automatic] +synonym: "soft palate mesenchyme" EXACT [OBOL:automatic] +xref: EMAPA:18951 +is_a: UBERON:0003323 ! mesenchyme of upper jaw +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001733 ! soft palate +relationship: part_of UBERON:0001733 ! soft palate + +[Term] +id: UBERON:0003418 +name: mesenchyme of submandibular gland +def: "Mesenchyme that is part of a developing submandibular gland [Automatically generated definition]." [OBOL:automatic] +synonym: "submandibular gland mesenchyme" EXACT [OBOL:automatic] +synonym: "submaxillary gland mesenchyme" RELATED [EMAPA:18814] +xref: EMAPA:18814 +xref: VHOG:0001110 +is_a: UBERON:0003324 ! mesenchyme of lower jaw +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001736 ! submandibular gland +relationship: part_of UBERON:0001736 ! submandibular gland + +[Term] +id: UBERON:0003419 +name: mesenchyme of parotid +def: "Mesenchyme that is part of a developing parotid gland [Automatically generated definition]." [OBOL:automatic] +synonym: "mesenchyme of parotid gland" EXACT [OBOL:automatic] +synonym: "parotid gland mesenchyme" EXACT [OBOL:automatic] +synonym: "parotid mesenchyme" EXACT [OBOL:automatic] +xref: EMAPA:18539 +xref: VHOG:0001435 +is_a: UBERON:0003324 ! mesenchyme of lower jaw +is_a: UBERON:0009891 ! facial mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001831 ! parotid gland +relationship: part_of UBERON:0001831 ! parotid gland + +[Term] +id: UBERON:0003420 +name: mesenchyme of sublingual gland +def: "Mesenchyme that is part of a developing sublingual gland [Automatically generated definition]." [OBOL:automatic] +synonym: "ductus sublingualis mesenchyme" EXACT [OBOL:automatic] +synonym: "mesenchyme of ductus sublingualis" EXACT [OBOL:automatic] +synonym: "mesenchyme of Rivinus'gland" EXACT [OBOL:automatic] +synonym: "Rivinus'gland mesenchyme" EXACT [OBOL:automatic] +synonym: "sublingual gland mesenchyme" EXACT [OBOL:automatic] +xref: EMAPA:18811 +xref: VHOG:0001106 +is_a: UBERON:0005253 ! head mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001832 ! sublingual gland +relationship: part_of UBERON:0001832 ! sublingual gland + +[Term] +id: UBERON:0003421 +name: mesenchyme of vomeronasal organ +def: "Mesenchyme that is part of a developing vomeronasal organ [Automatically generated definition]." [OBOL:automatic] +synonym: "Jacobson's organ mesenchyme" EXACT [OBOL:automatic] +synonym: "mesenchyme of Jacobson's organ" EXACT [OBOL:automatic] +synonym: "vomeronasal mesenchyme" EXACT [EHDAA2:0004103] +synonym: "vomeronasal organ mesenchyme" EXACT [OBOL:automatic] +xref: EHDAA2:0004103 +xref: EMAPA:18445 +is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0009891 ! facial mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0002255 ! vomeronasal organ +relationship: develops_from UBERON:0009204 {source="EHDAA2"} ! medial nasal process mesenchyme +relationship: part_of UBERON:0002255 {source="EHDAA2"} ! vomeronasal organ + +[Term] +id: UBERON:0003422 +name: mesenchyme of umbilical cord +def: "A gelatinous substance within the umbilical cord, largely made up of mucopolysaccharides (hyaluronic acid and chondroitin sulfate). It also contains some fibroblasts and macrophages. It is derived from Extra Embryonic Mesoderm[WP]" [http://en.wikipedia.org/wiki/Wharton's_jelly] +synonym: "umbilical cord mesenchyme" EXACT [OBOL:automatic] +synonym: "Wharton's jelly" EXACT [EMAPA:26127] +xref: EMAPA:26127 +xref: EMAPA:35925 +xref: http://www.snomedbrowser.com/Codes/Details/368069009 +xref: Wharton's:jelly +is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005292 ! extraembryonic tissue +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0002331 ! umbilical cord +relationship: part_of UBERON:0002331 ! umbilical cord + +[Term] +id: UBERON:0003424 +name: mesenchyme of hard palate +def: "Mesenchyme that is part of a developing hard palate [Automatically generated definition]." [OBOL:automatic] +synonym: "hard palate mesenchyme" EXACT [OBOL:automatic] +xref: EMAPA:18954 +is_a: UBERON:0003323 ! mesenchyme of upper jaw +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0003216 ! hard palate +relationship: part_of UBERON:0003216 ! hard palate + +[Term] +id: UBERON:0003425 +name: renal lymph node +def: "A lymph node that is located in a kidney [Automatically generated definition]." [OBOL:automatic] +synonym: "kidney lymph node" EXACT [OBOL:automatic] +synonym: "lymph node of kidney" EXACT [OBOL:automatic] +xref: FMA:276799 +xref: http://linkedlifedata.com/resource/umls/id/C2699031 +xref: MA:0002882 +xref: NCIT:C77646 +xref: UMLS:C2699031 {source="ncithesaurus:Renal_Lymph_Node"} +is_a: UBERON:0000029 ! lymph node +intersection_of: UBERON:0000029 ! lymph node +intersection_of: located_in UBERON:0002113 ! kidney +relationship: located_in UBERON:0002113 ! kidney + +[Term] +id: UBERON:0003426 +name: dermis adipose tissue +def: "An adipose tissue that is part of a dermis [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "adipose tissue of dermis" EXACT [OBOL:automatic] +synonym: "dermis fat tissue" EXACT [OBOL:automatic] +synonym: "dermis fatty tissue" EXACT [OBOL:automatic] +synonym: "fat tissue of dermis" EXACT [OBOL:automatic] +synonym: "fatty tissue of dermis" EXACT [OBOL:automatic] +xref: MA:0000798 +is_a: UBERON:0001013 ! adipose tissue +is_a: UBERON:0003585 ! dermis connective tissue +intersection_of: UBERON:0001013 ! adipose tissue +intersection_of: part_of UBERON:0002067 ! dermis + +[Term] +id: UBERON:0003427 +name: abdominal fat pad +def: "The encapsulated adipose tissue in the abdomen." [MP:0000010] +subset: pheno_slim +synonym: "abdomen fat pad" EXACT [OBOL:automatic] +synonym: "abdominal fat depot" EXACT [] +synonym: "fat pad of abdomen" EXACT [OBOL:automatic] +xref: EMAPA:36499 +xref: MA:0000472 +is_a: UBERON:0003916 ! fat pad +is_a: UBERON:0007808 ! adipose tissue of abdominal region +intersection_of: UBERON:0003916 ! fat pad +intersection_of: part_of UBERON:0000916 ! abdomen + +[Term] +id: UBERON:0003428 +name: gonadal fat pad +def: "The encapsulated adipose tissue associated with the ovaries or testes." [MP:0005335] +subset: efo_slim +subset: pheno_slim +synonym: "fat pad of gonad" EXACT [OBOL:automatic] +synonym: "fat pad of gonads" EXACT [OBOL:automatic] +synonym: "gonad fat pad" EXACT [OBOL:automatic] +synonym: "gonad-associated fat pad" EXACT [] +synonym: "gonadal fat depot" EXACT [] +synonym: "gonadal fat pad" EXACT [OBOL:automatic] +xref: AAO:0000157 +xref: EFO:0000811 +xref: MA:0002547 +xref: XAO:0003050 +is_a: UBERON:0003916 ! fat pad +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0003916 ! fat pad +intersection_of: part_of UBERON:0000991 ! gonad +relationship: part_of UBERON:0000991 ! gonad + +[Term] +id: UBERON:0003429 +name: abdomen nerve +def: "A nerve that is part of an abdomen [Automatically generated definition]." [OBOL:automatic] +synonym: "nerve of abdomen" EXACT [OBOL:automatic] +xref: MA:0000521 +is_a: UBERON:0003825 ! nerve of abdominal segment +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0000916 ! abdomen +relationship: part_of UBERON:0000916 ! abdomen + +[Term] +id: UBERON:0003430 +name: neck nerve +def: "A nerve that is part of a neck [Automatically generated definition]." [OBOL:automatic] +synonym: "neck (volume) nerve" EXACT [OBOL:automatic] +synonym: "nerve of neck" EXACT [OBOL:automatic] +synonym: "nerve of neck (volume)" EXACT [OBOL:automatic] +xref: EMAPA:37263 {source="MA:th"} +xref: MA:0000588 +is_a: UBERON:0001021 ! nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0000974 ! neck +relationship: part_of UBERON:0000974 ! neck + +[Term] +id: UBERON:0003431 +name: leg nerve +def: "A nerve that is part of a leg [Automatically generated definition]." [OBOL:automatic] +synonym: "nerve of leg" EXACT [OBOL:automatic] +xref: EMAPA:37343 {source="MA:th"} +xref: MA:0000673 +is_a: UBERON:0003442 ! hindlimb nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0000978 ! leg +relationship: part_of UBERON:0000978 ! leg + +[Term] +id: UBERON:0003432 +name: chest nerve +def: "A nerve that is part of a chest [Automatically generated definition]." [OBOL:automatic] +synonym: "anterior thoracic region nerve" EXACT [OBOL:automatic] +synonym: "anterolateral part of thorax nerve" EXACT [OBOL:automatic] +synonym: "front of thorax nerve" EXACT [OBOL:automatic] +synonym: "nerve of anterior thoracic region" EXACT [OBOL:automatic] +synonym: "nerve of anterolateral part of thorax" EXACT [OBOL:automatic] +synonym: "nerve of chest" EXACT [OBOL:automatic] +synonym: "nerve of front of thorax" EXACT [OBOL:automatic] +xref: EMAPA:37266 {source="MA:th"} +xref: MA:0000551 +is_a: UBERON:0003824 ! nerve of thoracic segment +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0001443 ! chest +relationship: part_of UBERON:0001443 ! chest + +[Term] +id: UBERON:0003433 +name: arm nerve +def: "A nerve that is part of an arm [Automatically generated definition]." [OBOL:automatic] +synonym: "brachial region nerve" EXACT [OBOL:automatic] +synonym: "nerve of arm" EXACT [OBOL:automatic] +synonym: "nerve of brachial region" EXACT [OBOL:automatic] +xref: EMAPA:37336 {source="MA:th"} +xref: MA:0000595 +is_a: UBERON:0003441 ! forelimb nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0001460 ! arm +relationship: part_of UBERON:0001460 ! arm + +[Term] +id: UBERON:0003434 +name: wrist nerve +def: "A nerve that is part of a wrist [Automatically generated definition]." [OBOL:automatic] +synonym: "carpal region nerve" EXACT [OBOL:automatic] +synonym: "nerve of carpal region" EXACT [OBOL:automatic] +synonym: "nerve of wrist" EXACT [OBOL:automatic] +xref: EMAPA:37339 {source="MA:th"} +xref: MA:0000637 +is_a: UBERON:0003448 ! manus nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0004452 ! carpal region +relationship: part_of UBERON:0004452 ! carpal region + +[Term] +id: UBERON:0003435 +name: pedal digit nerve +def: "A nerve that is part of a toe [Automatically generated definition]." [OBOL:automatic] +synonym: "digit of foot nerve" EXACT [OBOL:automatic] +synonym: "digit of terminal segment of free lower limb nerve" EXACT [OBOL:automatic] +synonym: "digitus pedis nerve" EXACT [OBOL:automatic] +synonym: "foot digit nerve" EXACT [MA:0000649] +synonym: "foot digit nerve" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit nerve" EXACT [OBOL:accepted] +synonym: "nerve of digit of foot" EXACT [OBOL:automatic] +synonym: "nerve of digit of terminal segment of free lower limb" EXACT [OBOL:automatic] +synonym: "nerve of digitus pedis" EXACT [OBOL:automatic] +synonym: "nerve of foot digit" EXACT [OBOL:automatic] +synonym: "nerve of terminal segment of free lower limb digit" EXACT [OBOL:automatic] +synonym: "nerve of toe" EXACT [OBOL:automatic] +synonym: "terminal segment of free lower limb digit nerve" EXACT [OBOL:automatic] +synonym: "toe nerve" EXACT [OBOL:automatic] +xref: EMAPA:37348 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/300056004 +xref: MA:0000649 +is_a: UBERON:0003445 ! pes nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0001466 ! pedal digit +relationship: part_of UBERON:0001466 ! pedal digit + +[Term] +id: UBERON:0003436 +name: shoulder nerve +def: "A nerve that is part of a shoulder [Automatically generated definition]." [OBOL:automatic] +synonym: "nerve of shoulder" EXACT [OBOL:automatic] +xref: EMAPA:37335 {source="MA:th"} +xref: MA:0000634 +is_a: UBERON:0001021 ! nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0001467 ! shoulder +relationship: part_of UBERON:0001467 ! shoulder + +[Term] +id: UBERON:0003437 +name: eyelid nerve +def: "A nerve that innervates an eyelid." [http://orcid.org/0000-0002-6601-2165] +synonym: "blepharon nerve" EXACT [OBOL:automatic] +synonym: "nerve of blepharon" EXACT [OBOL:automatic] +synonym: "nerve of eyelid" EXACT [OBOL:automatic] +synonym: "palpebral nerve" EXACT [OBOL:automatic] +xref: EMAPA:37535 {source="MA:th"} +xref: MA:0001255 +is_a: UBERON:0001021 ! nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: innervates UBERON:0001711 ! eyelid +relationship: innervates UBERON:0001711 ! eyelid + +[Term] +id: UBERON:0003438 +name: iris nerve +def: "Any nerve that innervates the iris." [UBERON:cjm] +synonym: "ciliary nerve" NARROW [] +synonym: "nerve of iris" EXACT [OBOL:automatic] +xref: EMAPA:35449 +xref: MA:0001291 +is_a: UBERON:0001021 ! nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: innervates UBERON:0001769 ! iris +relationship: innervates UBERON:0001769 ! iris + +[Term] +id: UBERON:0003439 +name: nerve of trunk region +def: "A nerve that is part of the trunk region of the body (not to be confused with a nerve trunk)." [http://orcid.org/0000-0002-6601-2165] +subset: grouping_class +subset: non_informative +synonym: "nerve of torso" EXACT [OBOL:automatic] +synonym: "nerve of trunk" EXACT [OBOL:automatic] +synonym: "torso nerve" EXACT [OBOL:automatic] +synonym: "trunk nerve" RELATED [MA:0000515] +xref: EMAPA:37264 {source="MA:th"} +xref: MA:0000515 +is_a: UBERON:0001021 ! nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0002100 ! trunk +relationship: part_of UBERON:0002100 ! trunk + +[Term] +id: UBERON:0003440 +name: limb nerve +def: "A nerve that is part of a limb [Automatically generated definition]." [OBOL:automatic] +synonym: "nerve of limb" EXACT [OBOL:automatic] +xref: EMAPA:37291 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/359923002 +xref: MA:0000693 +is_a: UBERON:0001021 ! nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0002101 ! limb +relationship: part_of UBERON:0002101 ! limb + +[Term] +id: UBERON:0003441 +name: forelimb nerve +def: "A nerve that is part of a forelimb [Automatically generated definition]." [OBOL:automatic] +synonym: "fore limb nerve" EXACT [OBOL:automatic] +synonym: "nerve of fore limb" EXACT [OBOL:automatic] +synonym: "nerve of forelimb" EXACT [OBOL:automatic] +synonym: "nerve of superior member" EXACT [OBOL:automatic] +synonym: "nerve of upper extremity" EXACT [OBOL:automatic] +synonym: "wing nerve" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +xref: EMAPA:37334 {source="MA:th"} +xref: MA:0000616 +is_a: UBERON:0003440 ! limb nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0002102 ! forelimb +relationship: part_of UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0003442 +name: hindlimb nerve +def: "A nerve that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] +synonym: "hind limb nerve" EXACT [OBOL:automatic] +synonym: "nerve of hind limb" EXACT [OBOL:automatic] +synonym: "nerve of hindlimb" EXACT [OBOL:automatic] +synonym: "nerve of inferior member" EXACT [OBOL:automatic] +synonym: "nerve of lower extremity" EXACT [OBOL:automatic] +xref: EMAPA:37342 {source="MA:th"} +xref: MA:0000664 +is_a: UBERON:0003440 ! limb nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0002103 ! hindlimb +relationship: part_of UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0003443 +name: thoracic cavity nerve +def: "A nerve that is located in a thoracic cavity [Automatically generated definition]." [OBOL:automatic] +synonym: "cavity of chest nerve" EXACT [OBOL:automatic] +synonym: "cavity of thorax nerve" EXACT [OBOL:automatic] +synonym: "chest cavity nerve" EXACT [OBOL:automatic] +synonym: "nerve of cavity of chest" EXACT [OBOL:automatic] +synonym: "nerve of cavity of thorax" EXACT [OBOL:automatic] +synonym: "nerve of chest cavity" EXACT [OBOL:automatic] +synonym: "nerve of pectoral cavity" EXACT [OBOL:automatic] +synonym: "nerve of thoracic cavity" EXACT [OBOL:automatic] +synonym: "pectoral cavity nerve" EXACT [OBOL:automatic] +xref: EMAPA:37267 {source="MA:th"} +xref: MA:0000556 +is_a: UBERON:0001021 ! nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: located_in UBERON:0002224 ! thoracic cavity +relationship: located_in UBERON:0002224 ! thoracic cavity + +[Term] +id: UBERON:0003444 +name: pelvis nerve +def: "A nerve that is part of a pelvis [Automatically generated definition]." [OBOL:automatic] +synonym: "nerve of pelvis" EXACT [OBOL:automatic] +xref: EMAPA:37269 {source="MA:th"} +xref: MA:0000542 +is_a: UBERON:0003825 ! nerve of abdominal segment +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0002355 ! pelvic region of trunk +relationship: part_of UBERON:0002355 ! pelvic region of trunk + +[Term] +id: UBERON:0003445 +name: pes nerve +def: "A nerve that is part of a foot [Automatically generated definition]." [OBOL:automatic] +synonym: "foot nerve" EXACT [MA:0000653] +synonym: "nerve of foot" EXACT [OBOL:automatic] +xref: EMAPA:37347 {source="MA:th"} +xref: MA:0000653 +is_a: UBERON:0003442 ! hindlimb nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0002387 ! pes +relationship: part_of UBERON:0002387 ! pes + +[Term] +id: UBERON:0003446 +name: ankle nerve +def: "A nerve that is part of an ankle [Automatically generated definition]." [OBOL:automatic] +synonym: "nerve of ankle" EXACT [OBOL:automatic] +synonym: "neural network of ankle" RELATED [FMA:86901] +synonym: "tarsal region nerve" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: EMAPA:37346 {source="MA:th"} +xref: MA:0000640 +is_a: UBERON:0003445 ! pes nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0004454 ! tarsal region +relationship: part_of UBERON:0004454 ! tarsal region +relationship: seeAlso FMA:86901 + +[Term] +id: UBERON:0003447 +name: digit nerve of manus +def: "A nerve that is part of a finger [Automatically generated definition]." [OBOL:automatic] +synonym: "digit of hand nerve" EXACT [OBOL:automatic] +synonym: "digit of terminal segment of free upper limb nerve" EXACT [OBOL:automatic] +synonym: "digitus manus nerve" EXACT [OBOL:automatic] +synonym: "finger nerve" EXACT [OBOL:automatic] +synonym: "hand digit nerve" EXACT [MA:0000625] +synonym: "nerve of digit of hand" EXACT [OBOL:automatic] +synonym: "nerve of digit of terminal segment of free upper limb" EXACT [OBOL:automatic] +synonym: "nerve of digitus manus" EXACT [OBOL:automatic] +synonym: "nerve of finger" EXACT [OBOL:automatic] +synonym: "nerve of hand digit" EXACT [OBOL:automatic] +synonym: "nerve of terminal segment of free upper limb digit" EXACT [OBOL:automatic] +synonym: "terminal segment of free upper limb digit nerve" EXACT [OBOL:automatic] +xref: EMAPA:37341 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/181015006 +xref: MA:0000625 +is_a: UBERON:0003448 ! manus nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0002389 ! manual digit +relationship: part_of UBERON:0002389 ! manual digit + +[Term] +id: UBERON:0003448 +name: manus nerve +def: "A nerve that is part of a manus [Automatically generated definition]." [OBOL:automatic] +synonym: "hand nerve" EXACT [MA:0000629] +synonym: "nerve of hand" EXACT [UBERON:cjm] +synonym: "nerve of manus" EXACT [OBOL:automatic] +xref: EMAPA:37340 {source="MA:th"} +xref: MA:0000629 +is_a: UBERON:0003441 ! forelimb nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0002398 ! manus +relationship: part_of UBERON:0002398 ! manus + +[Term] +id: UBERON:0003449 +name: tail intervertebral disc +def: "An intervertebral disk that is part of a tail [Automatically generated definition]." [OBOL:automatic] +synonym: "intervertebral disc of post-ventral region" EXACT [UBERON:cjm] +synonym: "intervertebral disc of tail" EXACT [OBOL:automatic] +synonym: "intervertebral disk of post-ventral region" EXACT [OBOL:automatic] +synonym: "intervertebral disk of tail" EXACT [OBOL:automatic] +synonym: "tail intervertebral disk" EXACT [OBOL:automatic] +synonym: "tail spinal disc" EXACT [OBOL:automatic] +xref: EMAPA:19592 +xref: MA:0000698 +is_a: UBERON:0001066 ! intervertebral disk +intersection_of: UBERON:0001066 ! intervertebral disk +intersection_of: part_of UBERON:0007812 ! post-anal tail +relationship: part_of UBERON:0007812 ! post-anal tail + +[Term] +id: UBERON:0003450 +name: upper jaw incisor +def: "An incisor tooth that is part of a upper jaw [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "incisor of palatoquadrate arch" EXACT [OBOL:automatic] +synonym: "incisor of upper jaw" EXACT [OBOL:automatic] +synonym: "incisor tooth of palatoquadrate arch" EXACT [OBOL:automatic] +synonym: "incisor tooth of upper jaw" EXACT [OBOL:automatic] +synonym: "maxillary incisor tooth" RELATED [FMA:55712] +synonym: "palatoquadrate arch incisor" EXACT [OBOL:automatic] +synonym: "palatoquadrate arch incisor tooth" EXACT [OBOL:automatic] +synonym: "premaxillary tooth" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "upper incisor" EXACT [https://orcid.org/0000-0002-6601-2165, OBOL:automatic] +synonym: "upper jaw incisor tooth" EXACT [OBOL:automatic] +xref: EHDAA2:0002121 +xref: EMAPA:17939 +xref: FMA:321754 +xref: http://linkedlifedata.com/resource/umls/id/C1710579 +xref: http://www.snomedbrowser.com/Codes/Details/421578001 +xref: MA:0001601 +xref: NCIT:C49794 +xref: UMLS:C1710579 {source="ncithesaurus:Upper_Jaw_Incisor"} +is_a: UBERON:0001098 ! incisor tooth +is_a: UBERON:2001626 ! premaxillary tooth +intersection_of: UBERON:0001098 ! incisor tooth +intersection_of: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0003451 +name: lower jaw incisor +def: "An incisor tooth that is part of a lower jaw [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "incisor of lower jaw" EXACT [OBOL:automatic] +synonym: "incisor of ventral mandibular arch" EXACT [OBOL:automatic] +synonym: "incisor tooth of lower jaw" EXACT [OBOL:automatic] +synonym: "incisor tooth of ventral mandibular arch" EXACT [OBOL:automatic] +synonym: "lower incisor" EXACT [https://orcid.org/0000-0002-6601-2165, OBOL:automatic] +synonym: "lower jaw incisor tooth" EXACT [OBOL:automatic] +synonym: "mandibular incisor" EXACT [BTO:0001942] +synonym: "ventral mandibular arch incisor" EXACT [OBOL:automatic] +synonym: "ventral mandibular arch incisor tooth" EXACT [OBOL:automatic] +xref: BTO:0001942 +xref: EHDAA2:0001021 +xref: EMAPA:17918 +xref: http://linkedlifedata.com/resource/umls/id/C1708755 +xref: MA:0001600 +xref: NCIT:C49583 +xref: UMLS:C1708755 {source="ncithesaurus:Lower_Jaw_Incisor"} +is_a: UBERON:0001098 ! incisor tooth +is_a: UBERON:0003268 ! tooth of lower jaw +intersection_of: UBERON:0001098 ! incisor tooth +intersection_of: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0003452 +name: trabecula carnea cardiac muscle tissue +def: "A portion of cardiac muscle tissue that is part of a trabecula carnea [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "cardiac muscle muscle tissue of trabecula carnea" EXACT [OBOL:automatic] +synonym: "cardiac muscle of trabecula carnea" EXACT [OBOL:automatic] +synonym: "cardiac muscle textus muscularis of trabecula carnea" EXACT [OBOL:automatic] +synonym: "cardiac muscle tissue of trabecula carnea" EXACT [OBOL:automatic] +synonym: "heart muscle muscle tissue of trabecula carnea" EXACT [OBOL:automatic] +synonym: "heart muscle textus muscularis of trabecula carnea" EXACT [OBOL:automatic] +synonym: "heart myocardium muscle tissue of trabecula carnea" EXACT [OBOL:automatic] +synonym: "heart myocardium textus muscularis of trabecula carnea" EXACT [OBOL:automatic] +synonym: "muscle of heart muscle tissue of trabecula carnea" EXACT [OBOL:automatic] +synonym: "muscle of heart textus muscularis of trabecula carnea" EXACT [OBOL:automatic] +synonym: "muscle tissue of cardiac muscle of trabecula carnea" EXACT [OBOL:automatic] +synonym: "muscle tissue of heart muscle of trabecula carnea" EXACT [OBOL:automatic] +synonym: "muscle tissue of heart myocardium of trabecula carnea" EXACT [OBOL:automatic] +synonym: "muscle tissue of muscle of heart of trabecula carnea" EXACT [OBOL:automatic] +synonym: "muscle tissue of myocardium of trabecula carnea" EXACT [OBOL:automatic] +synonym: "myocardium muscle tissue of trabecula carnea" EXACT [OBOL:automatic] +synonym: "myocardium textus muscularis of trabecula carnea" EXACT [OBOL:automatic] +synonym: "textus muscularis of cardiac muscle of trabecula carnea" EXACT [OBOL:automatic] +synonym: "textus muscularis of heart muscle of trabecula carnea" EXACT [OBOL:automatic] +synonym: "textus muscularis of heart myocardium of trabecula carnea" EXACT [OBOL:automatic] +synonym: "textus muscularis of muscle of heart of trabecula carnea" EXACT [OBOL:automatic] +synonym: "textus muscularis of myocardium of trabecula carnea" EXACT [OBOL:automatic] +synonym: "trabecula carnea cardiac muscle" EXACT [OBOL:automatic] +synonym: "trabecula carnea cardiac muscle muscle tissue" EXACT [OBOL:automatic] +synonym: "trabecula carnea cardiac muscle textus muscularis" EXACT [OBOL:automatic] +synonym: "trabecula carnea heart muscle muscle tissue" EXACT [OBOL:automatic] +synonym: "trabecula carnea heart muscle textus muscularis" EXACT [OBOL:automatic] +synonym: "trabecula carnea heart myocardium muscle tissue" EXACT [OBOL:automatic] +synonym: "trabecula carnea heart myocardium textus muscularis" EXACT [OBOL:automatic] +synonym: "trabecula carnea muscle of heart muscle tissue" EXACT [OBOL:automatic] +synonym: "trabecula carnea muscle of heart textus muscularis" EXACT [OBOL:automatic] +synonym: "trabecula carnea muscle tissue of cardiac muscle" EXACT [OBOL:automatic] +synonym: "trabecula carnea muscle tissue of heart muscle" EXACT [OBOL:automatic] +synonym: "trabecula carnea muscle tissue of heart myocardium" EXACT [OBOL:automatic] +synonym: "trabecula carnea muscle tissue of muscle of heart" EXACT [OBOL:automatic] +synonym: "trabecula carnea muscle tissue of myocardium" EXACT [OBOL:automatic] +synonym: "trabecula carnea myocardium muscle tissue" EXACT [OBOL:automatic] +synonym: "trabecula carnea myocardium textus muscularis" EXACT [OBOL:automatic] +synonym: "trabecula carnea textus muscularis of cardiac muscle" EXACT [OBOL:automatic] +synonym: "trabecula carnea textus muscularis of heart muscle" EXACT [OBOL:automatic] +synonym: "trabecula carnea textus muscularis of heart myocardium" EXACT [OBOL:automatic] +synonym: "trabecula carnea textus muscularis of muscle of heart" EXACT [OBOL:automatic] +synonym: "trabecula carnea textus muscularis of myocardium" EXACT [OBOL:automatic] +xref: EMAPA:36573 +xref: FMA:84428 +xref: MA:0002833 +is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle +intersection_of: UBERON:0001133 ! cardiac muscle tissue +intersection_of: part_of UBERON:0002511 ! trabecula carnea +relationship: part_of UBERON:0002511 ! trabecula carnea + +[Term] +id: UBERON:0003453 +name: large intestine Peyer's patch +def: "A Peyer's patch that is part of a large intestine." [OBOL:automatic] +synonym: "large intestine Peyer's patch" EXACT [OBOL:automatic] +synonym: "Peyer's patch of large intestine" EXACT [OBOL:automatic] +synonym: "solitary lymphatic follicle of large intestine" RELATED [FMA:15658] +synonym: "solitary lymphoid follicle of subdivision of large intestine" RELATED [FMA:15658] +xref: EMAPA:35468 +xref: FMA:15658 +xref: MA:0001550 +is_a: UBERON:0001211 ! Peyer's patch +intersection_of: UBERON:0001211 ! Peyer's patch +intersection_of: part_of UBERON:0000059 ! large intestine +relationship: part_of UBERON:0000059 ! large intestine + +[Term] +id: UBERON:0003454 +name: small intestine Peyer's patch +def: "nodular lymphoid structures on the serosal surface of the small intestine." [http://orcid.org/0000-0002-6601-2165] +synonym: "aggregated lymphoid follicle of small intestine" EXACT [FMA:15054] +synonym: "noduli lymphoidei aggregati intestini tenuis" EXACT LATIN [FMA:76466] +synonym: "Peyer's patch" BROAD [FMA:15054] +synonym: "Peyer's patch of small bowel" EXACT [OBOL:automatic] +synonym: "Peyer's patch of small intestine" EXACT [OBOL:automatic] +synonym: "small bowel Peyer's patch" EXACT [OBOL:automatic] +synonym: "small intestine Peyer's patch" EXACT [OBOL:automatic] +xref: EMAPA:35782 +xref: FMA:15054 +xref: http://www.snomedbrowser.com/Codes/Details/38986009 +xref: MA:0001557 +is_a: UBERON:0001211 ! Peyer's patch +intersection_of: UBERON:0001211 ! Peyer's patch +intersection_of: part_of UBERON:0002108 ! small intestine +relationship: fma_set_term FMA:76466 +relationship: part_of UBERON:0001204 {source="ncithesaurus"} ! mucosa of small intestine + +[Term] +id: UBERON:0003455 +name: inner renal medulla loop of Henle +def: "A loop of Henle that is part of a inner medulla of kidney [Automatically generated definition]." [OBOL:automatic] +synonym: "kidney inner medulla loop of Henle" EXACT [MA:0002623] +synonym: "loop of Henle, inner medullary portion" EXACT [EMAPA:28352] +xref: EMAPA:28352 +xref: MA:0002623 +is_a: UBERON:0034997 ! renal medulla loop of Henle +intersection_of: UBERON:0001288 ! loop of Henle +intersection_of: part_of UBERON:0001294 ! inner medulla of kidney +relationship: part_of UBERON:0001294 ! inner medulla of kidney + +[Term] +id: UBERON:0003456 +name: respiratory system lymphatic vessel +def: "A lymphatic vessel that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +synonym: "apparatus respiratorius lymph vessel" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius lymphatic vessel" EXACT [OBOL:automatic] +synonym: "lymph vessel of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "lymph vessel of respiratory system" EXACT [OBOL:automatic] +synonym: "lymphatic vessel of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "lymphatic vessel of respiratory system" EXACT [OBOL:automatic] +synonym: "respiratory system lymph vessel" EXACT [OBOL:automatic] +xref: EMAPA:37580 {source="MA:th"} +xref: MA:0001824 +is_a: UBERON:0001473 ! lymphatic vessel +intersection_of: UBERON:0001473 ! lymphatic vessel +intersection_of: part_of UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0003457 +name: head bone +def: "A bone that is part of a head [Automatically generated definition]." [OBOL:automatic] +comment: Different sources vary regarding which bones are craniofacial; e.g. hyoid bone +subset: pheno_slim +synonym: "adult head bone" EXACT [OBOL:automatic] +synonym: "adult head bone organ" EXACT [OBOL:automatic] +synonym: "bone of adult head" EXACT [OBOL:automatic] +synonym: "bone of head" EXACT [OBOL:automatic] +synonym: "bone organ of adult head" EXACT [OBOL:automatic] +synonym: "bone organ of head" EXACT [OBOL:automatic] +synonym: "craniofacial bone" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "head bone organ" EXACT [OBOL:automatic] +xref: EMAPA:35996 +xref: http://www.snomedbrowser.com/Codes/Details/118646007 +xref: MA:0000576 +is_a: UBERON:0007914 ! bone of craniocervical region +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0000033 ! head +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0003458 +name: neck bone +def: "A bone that is part of a neck [Automatically generated definition]." [OBOL:automatic] +synonym: "bone of neck" EXACT [OBOL:automatic] +synonym: "bone of neck (volume)" EXACT [OBOL:automatic] +synonym: "bone organ of neck" EXACT [OBOL:automatic] +synonym: "bone organ of neck (volume)" EXACT [OBOL:automatic] +synonym: "neck (volume) bone" EXACT [OBOL:automatic] +synonym: "neck (volume) bone organ" EXACT [OBOL:automatic] +synonym: "neck bone organ" EXACT [OBOL:automatic] +xref: EMAPA:37246 {source="MA:th"} +xref: MA:0000584 +xref: OpenCyc:Mx4rvnpJSJwpEbGdrcN5Y29ycA +is_a: UBERON:0007914 ! bone of craniocervical region +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0000974 ! neck +relationship: part_of UBERON:0000974 ! neck + +[Term] +id: UBERON:0003459 +name: chest bone +def: "A bone that is part of a chest [Automatically generated definition]." [OBOL:automatic] +synonym: "anterior thoracic region bone" EXACT [OBOL:automatic] +synonym: "anterior thoracic region bone organ" EXACT [OBOL:automatic] +synonym: "anterolateral part of thorax bone" EXACT [OBOL:automatic] +synonym: "anterolateral part of thorax bone organ" EXACT [OBOL:automatic] +synonym: "bone of anterior thoracic region" EXACT [OBOL:automatic] +synonym: "bone of anterolateral part of thorax" EXACT [OBOL:automatic] +synonym: "bone of chest" EXACT [OBOL:automatic] +synonym: "bone of front of thorax" EXACT [OBOL:automatic] +synonym: "bone organ of anterior thoracic region" EXACT [OBOL:automatic] +synonym: "bone organ of anterolateral part of thorax" EXACT [OBOL:automatic] +synonym: "bone organ of chest" EXACT [OBOL:automatic] +synonym: "bone organ of front of thorax" EXACT [OBOL:automatic] +synonym: "chest bone organ" EXACT [OBOL:automatic] +synonym: "front of thorax bone" EXACT [OBOL:automatic] +synonym: "front of thorax bone organ" EXACT [OBOL:automatic] +xref: EMAPA:18025 +xref: MA:0000547 +is_a: UBERON:0003827 ! thoracic segment bone +is_a: UBERON:0005175 ! chest organ +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0001443 ! chest + +[Term] +id: UBERON:0003460 +name: arm bone +def: "A bone that is part of the region of the forelimb that includes the zeugopod and stylopod. Examples: patella, femur, tibia" [https://orcid.org/0000-0002-6601-2165] +synonym: "arm bone organ" EXACT [OBOL:automatic] +synonym: "bone of arm" EXACT [OBOL:automatic] +synonym: "bone of upper extremity" RELATED [GAID:178] +synonym: "bone organ of arm" EXACT [OBOL:automatic] +xref: EMAPA:37303 {source="MA:th"} +xref: MA:0000592 +xref: OpenCyc:Mx4rwKTXoJwpEbGdrcN5Y29ycA +is_a: UBERON:0008962 ! forelimb bone +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0001460 ! arm +relationship: part_of UBERON:0001460 ! arm + +[Term] +id: UBERON:0003461 +name: shoulder bone +def: "A bone that is connected via a shoulder joint (i.e. glenohumeral or acromioclavicular joints). The shoulder bones are the clavicle, scapula and humerus - but note that these are only considered to be shoulder bones when a true shoulder is present, as in most tetrapods." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "bone of shoulder" EXACT [OBOL:automatic] +synonym: "shoulder-articulating bone" EXACT [] +xref: MA:0000631 +is_a: UBERON:0010741 {notes="UBERONREF:0000003", source="MA"} ! bone of pectoral complex +relationship: part_of UBERON:0012475 ! skeleton of pectoral complex + +[Term] +id: UBERON:0003462 +name: facial bone +def: "A bone that is part of a facial skeleton [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "bone of facial skeleton" EXACT [OBOL:automatic] +synonym: "bone of viscerocranium" RELATED [OBOL:automatic] +synonym: "facial bone" EXACT [EMAPA:19019] +synonym: "facial skeleton bone" EXACT [OBOL:automatic] +synonym: "viscerocranium bone" RELATED [OBOL:automatic] +xref: EMAPA:19019 +xref: EMAPA:35924 +xref: http://linkedlifedata.com/resource/umls/id/C0015455 +xref: http://www.snomedbrowser.com/Codes/Details/181799005 +xref: MA:0001482 +xref: MA:0003159 +xref: NCIT:C63706 +xref: UMLS:C0015455 {source="ncithesaurus:Facial_Bone"} +is_a: UBERON:0003457 ! head bone +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0011156 ! facial skeleton +relationship: part_of UBERON:0011156 {source="MA"} ! facial skeleton + +[Term] +id: UBERON:0003463 +name: trunk bone +def: "A bone that is part of a trunk [Automatically generated definition]." [OBOL:automatic] +synonym: "bone of torso" EXACT [OBOL:automatic] +synonym: "bone of trunk" EXACT [OBOL:automatic] +synonym: "bone organ of torso" EXACT [OBOL:automatic] +synonym: "bone organ of trunk" EXACT [OBOL:automatic] +synonym: "torso bone" EXACT [OBOL:automatic] +synonym: "torso bone organ" EXACT [OBOL:automatic] +synonym: "trunk bone organ" EXACT [OBOL:automatic] +xref: EMAPA:36583 +xref: http://www.snomedbrowser.com/Codes/Details/427358002 +xref: MA:0000512 +is_a: UBERON:0001474 ! bone element +is_a: UBERON:0005177 ! trunk region element +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0002100 ! trunk + +[Term] +id: UBERON:0003464 +name: hindlimb bone +def: "A bone that is part of a hindlimb region. Examples: any pes phalanx, femur. Counter-examples: ischium, pubis (they are part of the pelvic girdle)" [https://orcid.org/0000-0002-6601-2165] +subset: efo_slim +synonym: "bone of hind limb" EXACT [OBOL:automatic] +synonym: "bone of hindlimb" EXACT [OBOL:automatic] +synonym: "bone of inferior member" EXACT [OBOL:automatic] +synonym: "bone of lower extremity" EXACT [OBOL:automatic] +synonym: "bone organ of hind limb" EXACT [OBOL:automatic] +synonym: "bone organ of hindlimb" EXACT [OBOL:automatic] +synonym: "bone organ of lower extremity" EXACT [OBOL:automatic] +synonym: "hind limb bone" EXACT [OBOL:automatic] +synonym: "hind limb bone organ" EXACT [OBOL:automatic] +synonym: "hindlimb bone organ" EXACT [OBOL:automatic] +xref: EFO:0003842 +xref: GAID:198 +xref: http://linkedlifedata.com/resource/umls/id/C0448188 +xref: http://www.snomedbrowser.com/Codes/Details/361370006 +xref: NCIT:C12982 +xref: UMLS:C0448188 {source="ncithesaurus:Bone_of_the_Lower_Extremity"} +is_a: UBERON:0002428 ! limb bone +is_a: UBERON:0010742 ! bone of pelvic complex +is_a: UBERON:0015022 ! hindlimb endochondral element +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0002103 ! hindlimb +relationship: develops_from UBERON:0010885 ! hindlimb cartilage element + +[Term] +id: UBERON:0003465 +name: obsolete chondrocranium bone +alt_id: UBERON:0004762 +def: "A bone that is part of a chondrocranium [Automatically generated definition]." [OBOL:accepted] +comment: Made obsolete because it conflated neuro and chondro-cranium; also ZFA:0001544 equivalent was made obsolete. +xref: ZFA:0001544 +is_obsolete: true +consider: UBERON:0011164 + +[Term] +id: UBERON:0003466 +name: forelimb zeugopod bone +def: "A bone that is part of a lower arm [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "antebrachial region bone" EXACT [OBOL:automatic] +synonym: "antebrachial region bone organ" EXACT [OBOL:automatic] +synonym: "arm zeugopod bone" EXACT [OBOL:automatic] +synonym: "arm zeugopod bone organ" EXACT [OBOL:automatic] +synonym: "lower arm bone" EXACT [MA:0000598] +synonym: "wing zeugopod bone" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +synonym: "zeugopod bone, forelimb" EXACT [OBOL:automatic] +synonym: "zeugopod bone, upper" EXACT [OBOL:automatic] +xref: EMAPA:35347 +xref: MA:0000598 +is_a: UBERON:0003460 ! arm bone +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0002386 ! forelimb zeugopod +relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton + +[Term] +id: UBERON:0003467 +name: sesamoid bone of gastrocnemius +def: "A small sesamoid bone situated behind a condyle of the femur." [http://en.wikipedia.org/wiki/Fabella, https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=3470151&group_id=76834, MP:0009005] +subset: pheno_slim +synonym: "fabella" RELATED [MA:0001378, NominaAnatomicaVeterinaria:2005] +synonym: "gastrocnemius sesamoid bone" EXACT [OBOL:automatic] +synonym: "m. gastrocnemius sesamoid bone" EXACT [OBOL:automatic] +synonym: "ossa sessamoidea m. gastrocnemii" EXACT LATIN [NominaAnatomicaVeterinaria:2005] +synonym: "sesamoid bone of m. gastrocnemius" EXACT [OBOL:automatic] +xref: EMAPA:35771 +xref: FMA:281591 +xref: galen:Fabella +xref: http://en.wikipedia.org/wiki/Fabella +xref: http://www.snomedbrowser.com/Codes/Details/302749009 +xref: MA:0001378 +is_a: UBERON:0001479 {source="MA"} ! sesamoid bone +is_a: UBERON:0004251 ! hindlimb zeugopod bone +is_a: UBERON:0011141 ! appendicular ossicle +relationship: adjacent_to UBERON:0001388 ! gastrocnemius + +[Term] +id: UBERON:0003468 +name: ureteric segment of renal artery +def: "The ureteral branches of renal artery are small branches which supply the ureter." [http://en.wikipedia.org/wiki/Ureteral_branches_of_renal_artery] +synonym: "ureteric artery" BROAD [MA:0002074] +xref: EMAPA:37676 {source="MA:th"} +xref: FMA:70491 +xref: http://en.wikipedia.org/wiki/Ureteral_branches_of_renal_artery +xref: http://www.snomedbrowser.com/Codes/Details/65376008 +xref: MA:0002074 +is_a: UBERON:0004573 ! systemic artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0000056 ! ureter +relationship: branching_part_of UBERON:0001184 {source="FMA"} ! renal artery +relationship: part_of UBERON:0001184 {source="FMA"} ! renal artery +relationship: supplies UBERON:0000056 ! ureter + +[Term] +id: UBERON:0003469 +name: respiratory system artery +def: "An artery that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:37569 {source="MA:th"} +xref: MA:0001804 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003643 ! respiratory system arterial blood vessel +intersection_of: UBERON:0001637 ! artery +intersection_of: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0003470 +name: artery of upper lip +def: "The superior labial artery (superior labial branch of facial artery) is larger and more tortuous than the inferior labial artery. It follows a similar course along the edge of the upper lip, lying between the mucous membrane and the Orbicularis oris, and anastomoses with the artery of the opposite side. It supplies the upper lip, and gives off in its course two or three vessels which ascend to the nose; a septal branch ramifies on the nasal septum as far as the point of the nose, and an alar branch supplies the ala of the nose." [http://en.wikipedia.org/wiki/Superior_labial_artery] +synonym: "arteria labialis superior" EXACT LATIN [http://en.wikipedia.org/wiki/Superior_labial_artery] +synonym: "ramus labialis superior arteriae facialis" EXACT LATIN [http://en.wikipedia.org/wiki/Superior_labial_artery] +synonym: "superior labial artery" EXACT [FMA:49570] +synonym: "superior labial branch of facial artery" EXACT [FMA:49570] +xref: EMAPA:37430 {source="MA:th"} +xref: FMA:49570 +xref: http://en.wikipedia.org/wiki/Superior_labial_artery +xref: http://www.snomedbrowser.com/Codes/Details/145137009 +xref: MA:0001917 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0009657 ! artery of lip +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0001834 ! upper lip +relationship: branching_part_of UBERON:0001612 {source="FMA"} ! facial artery +relationship: part_of UBERON:0001612 ! facial artery +relationship: supplies UBERON:0001834 ! upper lip + +[Term] +id: UBERON:0003471 +name: artery of lower lip +def: "The Iinferior labial artery (inferior labial branch of facial artery) arises near the angle of the mouth; it passes upward and forward beneath the Triangularis and, penetrating the Orbicularis oris, runs in a tortuous course along the edge of the lower lip between this muscle and the mucous membrane. It supplies the labial glands, the mucous membrane, and the muscles of the lower lip; and anastomoses with the artery of the opposite side, and with the mental branch of the inferior alveolar artery." [http://en.wikipedia.org/wiki/Inferior_labial_artery] +synonym: "arteria labialis inferior" EXACT LATIN [http://en.wikipedia.org/wiki/Inferior_labial_artery] +synonym: "inferior labial artery" EXACT [FMA:49567] +synonym: "inferior labial branch of facial artery" EXACT [FMA:49567] +synonym: "ramus labialis inferior (arteria facialis)" EXACT [FMA:TA] +synonym: "ramus labialis inferior arteriae facialis" EXACT LATIN [http://en.wikipedia.org/wiki/Inferior_labial_artery] +xref: EMAPA:37429 {source="MA:th"} +xref: FMA:49567 +xref: http://en.wikipedia.org/wiki/Inferior_labial_artery +xref: http://www.snomedbrowser.com/Codes/Details/145036002 +xref: MA:0001916 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0009657 ! artery of lip +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0001835 ! lower lip +relationship: branching_part_of UBERON:0001612 {source="FMA"} ! facial artery +relationship: part_of UBERON:0001612 ! facial artery +relationship: supplies UBERON:0001835 ! lower lip + +[Term] +id: UBERON:0003472 +name: cerebellar artery +def: "An artery that supplies blood to the cerebellum." [http://en.wikipedia.org/wiki/Cerebellar_artery] +xref: Cerebellar:artery +xref: EHDAA2:0000228 +xref: EHDAA:5290 +xref: EMAPA:37074 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C0226246 +xref: http://www.snomedbrowser.com/Codes/Details/278102002 +xref: MA:0001933 +xref: NCIT:C52845 +xref: UMLS:C0226246 {source="ncithesaurus:Cerebellar_Artery"} +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003496 ! head blood vessel +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0002037 ! cerebellum +relationship: supplies UBERON:0002037 ! cerebellum + +[Term] +id: UBERON:0003473 +name: thoracic cavity artery +def: "An artery that is part of a thoracic cavity[cjm]." [https://sourceforge.net/tracker/index.php?func=detail&aid=3317815&group_id=76834&atid=1205376] +synonym: "thoracic artery" RELATED [MESH:A07.231.114.891] +xref: EMAPA:37241 {source="MA:th"} +xref: MA:0001902 +xref: MESH:D013895 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003519 ! thoracic cavity blood vessel +intersection_of: UBERON:0001637 ! artery +intersection_of: located_in UBERON:0002224 ! thoracic cavity + +[Term] +id: UBERON:0003474 +name: meningeal artery +def: "One of the arteries supplying a meninix[Automatically generated definition]." [http://en.wikipedia.org/wiki/Meningeal_arteries] +xref: EMAPA:37104 {source="MA:th"} +xref: GAID:499 +xref: MA:0002001 +xref: Meningeal:arteries +xref: MESH:D008576 +is_a: UBERON:0001637 ! artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0002360 ! meninx +relationship: supplies UBERON:0002360 ! meninx + +[Term] +id: UBERON:0003475 +name: ureteric vein +def: "A vein that is part of a ureter [Automatically generated definition]." [OBOL:automatic] +synonym: "ureter vein" EXACT [OBOL:automatic] +synonym: "vein of ureter" EXACT [OBOL:automatic] +xref: EMAPA:37679 {source="MA:th"} +xref: MA:0002250 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003520 ! pelvis blood vessel +intersection_of: UBERON:0001638 ! vein +intersection_of: part_of UBERON:0000056 ! ureter +relationship: part_of UBERON:0000056 ! ureter + +[Term] +id: UBERON:0003476 +name: respiratory system venous blood vessel +def: "A vein that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +synonym: "apparatus respiratorius vein" EXACT [OBOL:automatic] +synonym: "respiratory system vein" EXACT [OBOL:automatic] +synonym: "vein of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "vein of respiratory system" EXACT [OBOL:automatic] +xref: EMAPA:37584 {source="MA:th"} +xref: MA:0001809 +xref: MA:0001810 +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0001004 ! respiratory system +relationship: drains UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0003477 +name: vein of upper lip +def: "The inferior labial vein is the vein receiving blood from the upper lip." [http://en.wikipedia.org/wiki/Superior_labial_vein] +synonym: "superior labial vein" EXACT [FMA:52538] +synonym: "upper lip vein" EXACT [OBOL:automatic] +synonym: "vena labialis superior" EXACT LATIN [] +xref: EMAPA:37204 {source="MA:th"} +xref: FMA:52538 +xref: http://en.wikipedia.org/wiki/Superior_labial_vein +xref: http://www.snomedbrowser.com/Codes/Details/422755007 +xref: MA:0002255 +is_a: UBERON:0013136 ! vein of lip +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0001834 ! upper lip +relationship: drains UBERON:0001834 ! upper lip + +[Term] +id: UBERON:0003478 +name: vein of lower lip +def: "The inferior labial vein is the vein receiving blood from the lower lip." [http://en.wikipedia.org/wiki/Inferior_labial_vein] +synonym: "inferior labial vein" EXACT [FMA:52541] +synonym: "lower lip vein" EXACT [OBOL:automatic] +synonym: "vena labialis inferior" EXACT LATIN [] +synonym: "venae labiales inferiores" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_labial_vein] +xref: EMAPA:37202 {source="MA:th"} +xref: FMA:52541 +xref: http://en.wikipedia.org/wiki/Inferior_labial_vein +xref: http://www.snomedbrowser.com/Codes/Details/422955002 +xref: MA:0002253 +is_a: UBERON:0013136 ! vein of lip +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0001835 ! lower lip +relationship: drains UBERON:0001835 ! lower lip + +[Term] +id: UBERON:0003479 +name: thoracic cavity vein +def: "A vein that is part of a thoracic cavity [Automatically generated definition]." [OBOL:automatic] +synonym: "cavity of chest vein" EXACT [OBOL:automatic] +synonym: "cavity of thorax vein" EXACT [OBOL:automatic] +synonym: "chest cavity vein" EXACT [OBOL:automatic] +synonym: "pectoral cavity vein" EXACT [OBOL:automatic] +synonym: "vein of cavity of chest" EXACT [OBOL:automatic] +synonym: "vein of cavity of thorax" EXACT [OBOL:automatic] +synonym: "vein of chest cavity" EXACT [OBOL:automatic] +synonym: "vein of pectoral cavity" EXACT [OBOL:automatic] +synonym: "vein of thoracic cavity" EXACT [OBOL:automatic] +xref: EMAPA:37242 {source="MA:th"} +xref: MA:0001903 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003519 ! thoracic cavity blood vessel +intersection_of: UBERON:0001638 ! vein +intersection_of: located_in UBERON:0002224 ! thoracic cavity + +[Term] +id: UBERON:0003480 +name: vein of clitoris +def: "A vein that is part of a clitoris [Automatically generated definition]." [OBOL:automatic] +synonym: "clitoris vein" EXACT [OBOL:automatic] +xref: EMAPA:37201 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/360819004 +xref: MA:0002252 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0001638 ! vein +intersection_of: part_of UBERON:0002411 ! clitoris +relationship: part_of UBERON:0002411 ! clitoris + +[Term] +id: UBERON:0003481 +name: tail vein +def: "A vein that is part of a tail [Automatically generated definition]." [http://en.wikipedia.org/wiki/Tail_vein, OBOL:automatic] +synonym: "caudal vein" RELATED [http://en.wikipedia.org/wiki/Tail_vein] +synonym: "post-vent region vein" EXACT [OBOL:automatic] +synonym: "vein of post-vent region" EXACT [OBOL:automatic] +synonym: "vein of tail" EXACT [OBOL:automatic] +xref: AAO:0011105 +xref: EMAPA:37761 {source="MA:th"} +xref: MA:0002233 +xref: Tail:vein +xref: XAO:0000393 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003524 ! tail blood vessel +intersection_of: UBERON:0001638 ! vein +intersection_of: part_of UBERON:0007812 ! post-anal tail + +[Term] +id: UBERON:0003482 +name: vein of trabecular bone +def: "A portion of vein that is part of a trabecular bone tissue [Automatically generated definition]." [OBOL:automatic] +synonym: "spongy bone vein" EXACT [OBOL:automatic] +synonym: "trabecular bone tissue vein" EXACT [OBOL:automatic] +synonym: "trabecular bone vein" EXACT [OBOL:automatic] +synonym: "vein of spongy bone" EXACT [OBOL:automatic] +synonym: "vein of trabecular bone tissue" EXACT [OBOL:automatic] +xref: EMAPA:37203 {source="MA:th"} +xref: MA:0002254 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0005744 ! bone foramen +intersection_of: UBERON:0001638 ! vein +intersection_of: part_of UBERON:0002483 ! trabecular bone tissue +relationship: part_of UBERON:0002483 ! trabecular bone tissue + +[Term] +id: UBERON:0003483 +name: thymus lymphoid tissue +def: "A portion of lymphoid tissue that is part of a thymus [Automatically generated definition]." [OBOL:automatic] +synonym: "lymphoid tissue of thymus" EXACT [OBOL:automatic] +synonym: "lymphoid tissue of thymus gland" EXACT [OBOL:automatic] +synonym: "thymus gland lymphoid tissue" EXACT [OBOL:automatic] +xref: EMAPA:37766 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1515429 +xref: MA:0002673 +xref: MESH:A06.407.850 +xref: NCIT:C38515 +xref: UMLS:C1515429 {source="ncithesaurus:Thymic_Lymphoid_Tissue"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0001744 ! lymphoid tissue +intersection_of: UBERON:0001744 ! lymphoid tissue +intersection_of: part_of UBERON:0002370 ! thymus +relationship: part_of UBERON:0002370 ! thymus + +[Term] +id: UBERON:0003484 +name: eye sebaceous gland +def: "A sebaceous gland that is part of a camera-type eye. Example: a tarsal gland." [http://orcid.org/0000-0002-6601-2165] +subset: organ_slim +synonym: "camera-type eye sebaceous gland" EXACT [OBOL:automatic] +synonym: "sebaceous gland of camera-type eye" EXACT [OBOL:automatic] +synonym: "sebaceous gland of vertebrate eye" EXACT [OBOL:automatic] +synonym: "vertebrate eye sebaceous gland" EXACT [OBOL:automatic] +xref: EMAPA:37531 {source="MA:th"} +xref: MA:0002452 +is_a: UBERON:0003487 {source="MA"} ! skin sebaceous gland +is_a: UBERON:0003605 ! eye skin gland +intersection_of: UBERON:0001821 ! sebaceous gland +intersection_of: part_of UBERON:0000019 ! camera-type eye + +[Term] +id: UBERON:0003485 +name: vagina sebaceous gland +def: "A sebaceous gland that is part of a vagina [Automatically generated definition]." [OBOL:automatic] +subset: organ_slim +synonym: "sebaceous gland of vagina" EXACT [OBOL:automatic] +xref: EMAPA:37793 {source="MA:th"} +xref: MA:0001732 +is_a: UBERON:0001821 ! sebaceous gland +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005398 ! female reproductive gland +intersection_of: UBERON:0001821 ! sebaceous gland +intersection_of: part_of UBERON:0000996 ! vagina +relationship: part_of UBERON:0000996 ! vagina + +[Term] +id: UBERON:0003486 +name: obsolete mammary gland sebaceous gland +is_obsolete: true +consider: UBERON:0011827 + +[Term] +id: UBERON:0003487 +name: skin sebaceous gland +def: "A holocrine gland of the dermis that secretes sebum into hair follicles." [MP:0009535] +subset: pheno_slim +synonym: "cutaneous sebaceous gland" EXACT [] +synonym: "sebaceous gland of skin" EXACT [OBOL:automatic] +xref: http://www.snomedbrowser.com/Codes/Details/115977007 +xref: MA:0000149 +is_a: UBERON:0001821 ! sebaceous gland + +[Term] +id: UBERON:0003488 +name: abdominal mammary gland +def: "A lactiferous gland that is part of the abdominal region [Automatically generated definition]." [OBOL:automatic] +synonym: "abdomen lactiferous gland" EXACT [OBOL:automatic] +synonym: "abdomen lobe of breast" EXACT [OBOL:automatic] +synonym: "abdomen lobe of mammary gland" EXACT [OBOL:automatic] +synonym: "abdomen mammary gland" EXACT [OBOL:automatic] +synonym: "lactiferous gland of abdomen" EXACT [OBOL:automatic] +synonym: "lobe of breast of abdomen" EXACT [OBOL:automatic] +synonym: "lobe of mammary gland of abdomen" EXACT [OBOL:automatic] +synonym: "mammary gland of abdomen" EXACT [OBOL:automatic] +xref: EMAPA:36507 +xref: http://www.snomedbrowser.com/Codes/Details/113191002 +xref: http://www.snomedbrowser.com/Codes/Details/68037003 +xref: MA:0000787 +is_a: UBERON:0001911 ! mammary gland +is_a: UBERON:0005172 ! abdomen element +intersection_of: UBERON:0001911 ! mammary gland +intersection_of: part_of UBERON:0000916 ! abdomen + +[Term] +id: UBERON:0003489 +name: respiratory system capillary endothelium +def: "An endothelium of capillary that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +synonym: "apparatus respiratorius blood capillary endothelium" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius capillary endothelium" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius capillary vessel endothelium" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius endothelium of blood capillary" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius endothelium of capillary" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius endothelium of capillary vessel" EXACT [OBOL:automatic] +synonym: "blood capillary endothelium of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "blood capillary endothelium of respiratory system" EXACT [OBOL:automatic] +synonym: "capillary endothelium of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "capillary endothelium of respiratory system" EXACT [OBOL:automatic] +synonym: "capillary vessel endothelium of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "capillary vessel endothelium of respiratory system" EXACT [OBOL:automatic] +synonym: "endothelium of blood capillary of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "endothelium of blood capillary of respiratory system" EXACT [OBOL:automatic] +synonym: "endothelium of capillary of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "endothelium of capillary of respiratory system" EXACT [OBOL:automatic] +synonym: "endothelium of capillary vessel of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "endothelium of capillary vessel of respiratory system" EXACT [OBOL:automatic] +synonym: "respiratory system blood capillary endothelium" EXACT [OBOL:automatic] +synonym: "respiratory system capillary vessel endothelium" EXACT [OBOL:automatic] +synonym: "respiratory system endothelium of blood capillary" EXACT [OBOL:automatic] +synonym: "respiratory system endothelium of capillary" EXACT [OBOL:automatic] +synonym: "respiratory system endothelium of capillary vessel" EXACT [OBOL:automatic] +xref: EMAPA:37575 {source="MA:th"} +xref: MA:0001808 +is_a: UBERON:0001915 ! endothelium of capillary +is_a: UBERON:0004702 ! respiratory system blood vessel endothelium +intersection_of: UBERON:0001915 ! endothelium of capillary +intersection_of: part_of UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0003526 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! respiratory system capillary + +[Term] +id: UBERON:0003490 +name: respiratory system reticular lamina +def: "A reticular lamina that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +synonym: "apparatus respiratorius fibroreticular lamina" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius lamina fibroreticularis" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius reticular lamina" EXACT [OBOL:automatic] +synonym: "fibroreticular lamina of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "fibroreticular lamina of respiratory system" EXACT [OBOL:automatic] +synonym: "lamina fibroreticularis of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "lamina fibroreticularis of respiratory system" EXACT [OBOL:automatic] +synonym: "respiratory system fibroreticular lamina" EXACT [OBOL:automatic] +synonym: "respiratory system lamina fibroreticularis" EXACT [OBOL:automatic] +synonym: "reticular lamina of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "reticular lamina of respiratory system" EXACT [OBOL:automatic] +xref: EMAPA:37572 {source="MA:th"} +xref: MA:0001817 +is_a: UBERON:0001967 ! reticular lamina of epithelium +intersection_of: UBERON:0001967 ! reticular lamina of epithelium +intersection_of: part_of UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0003492 +name: bronchus reticular lamina +def: "A reticular lamina that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchi fibroreticular lamina" EXACT [OBOL:automatic] +synonym: "bronchi lamina fibroreticularis" EXACT [OBOL:automatic] +synonym: "bronchi reticular lamina" EXACT [OBOL:automatic] +synonym: "bronchial trunk fibroreticular lamina" EXACT [OBOL:automatic] +synonym: "bronchial trunk lamina fibroreticularis" EXACT [OBOL:automatic] +synonym: "bronchial trunk reticular lamina" EXACT [OBOL:automatic] +synonym: "bronchus fibroreticular lamina" EXACT [OBOL:automatic] +synonym: "bronchus lamina fibroreticularis" EXACT [OBOL:automatic] +synonym: "fibroreticular lamina of bronchi" EXACT [OBOL:automatic] +synonym: "fibroreticular lamina of bronchial trunk" EXACT [OBOL:automatic] +synonym: "fibroreticular lamina of bronchus" EXACT [OBOL:automatic] +synonym: "lamina fibroreticularis of bronchi" EXACT [OBOL:automatic] +synonym: "lamina fibroreticularis of bronchial trunk" EXACT [OBOL:automatic] +synonym: "lamina fibroreticularis of bronchus" EXACT [OBOL:automatic] +synonym: "reticular lamina of bronchi" EXACT [OBOL:automatic] +synonym: "reticular lamina of bronchial trunk" EXACT [OBOL:automatic] +synonym: "reticular lamina of bronchus" EXACT [OBOL:automatic] +xref: EMAPA:37811 {source="MA:th"} +xref: MA:0001834 +is_a: UBERON:0003490 ! respiratory system reticular lamina +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0001967 ! reticular lamina of epithelium +intersection_of: part_of UBERON:0002185 ! bronchus +relationship: part_of UBERON:0009652 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! bronchus basement membrane + +[Term] +id: UBERON:0003493 +name: trachea reticular lamina +def: "A reticular lamina that is part of a trachea [Automatically generated definition]." [OBOL:automatic] +synonym: "fibroreticular lamina of cartilaginous trachea" EXACT [OBOL:automatic] +synonym: "fibroreticular lamina of windpipe" EXACT [OBOL:automatic] +synonym: "lamina fibroreticularis of cartilaginous trachea" EXACT [OBOL:automatic] +synonym: "lamina fibroreticularis of windpipe" EXACT [OBOL:automatic] +synonym: "reticular lamina of cartilaginous trachea" EXACT [OBOL:automatic] +synonym: "reticular lamina of windpipe" EXACT [OBOL:automatic] +synonym: "windpipe fibroreticular lamina" EXACT [OBOL:automatic] +synonym: "windpipe lamina fibroreticularis" EXACT [OBOL:automatic] +synonym: "windpipe reticular lamina" EXACT [OBOL:automatic] +xref: EMAPA:37554 {source="MA:th"} +xref: MA:0001856 +is_a: UBERON:0003490 ! respiratory system reticular lamina +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001967 ! reticular lamina of epithelium +intersection_of: part_of UBERON:0003126 ! trachea +relationship: part_of UBERON:0009653 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! trachea basement membrane + +[Term] +id: UBERON:0003494 +name: respiratory system venule +def: "A venule that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +synonym: "apparatus respiratorius venule" EXACT [OBOL:automatic] +synonym: "venule of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "venule of respiratory system" EXACT [OBOL:automatic] +xref: EMAPA:37587 {source="MA:th"} +xref: MA:0001813 +is_a: UBERON:0001979 ! venule +is_a: UBERON:0003504 ! respiratory system blood vessel +intersection_of: UBERON:0001979 ! venule +intersection_of: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0003495 +name: respiratory system arteriole +def: "An arteriole that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:37568 {source="MA:th"} +xref: MA:0001803 +is_a: UBERON:0001980 ! arteriole +is_a: UBERON:0003643 ! respiratory system arterial blood vessel +intersection_of: UBERON:0001980 ! arteriole +intersection_of: part_of UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0003469 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! respiratory system artery + +[Term] +id: UBERON:0003496 +name: head blood vessel +def: "A blood vessel that is part of a head [Automatically generated definition]." [OBOL:automatic] +synonym: "adult head blood vessel" EXACT [OBOL:automatic] +synonym: "blood vessel of adult head" EXACT [OBOL:automatic] +synonym: "blood vessel of head" EXACT [OBOL:automatic] +xref: EMAPA:36610 +xref: http://www.snomedbrowser.com/Codes/Details/127865000 +xref: MA:0000575 +is_a: UBERON:0001981 ! blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0000033 ! head +relationship: part_of UBERON:0011362 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! cranial blood vasculature + +[Term] +id: UBERON:0003497 +name: abdomen blood vessel +def: "A blood vessel that is part of an abdomen [Automatically generated definition]." [OBOL:automatic] +synonym: "blood vessel of abdomen" EXACT [OBOL:automatic] +xref: MA:0000518 +is_a: UBERON:0003835 ! abdominal segment blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0000916 ! abdomen +relationship: part_of UBERON:0000916 ! abdomen + +[Term] +id: UBERON:0003498 +name: heart blood vessel +def: "A blood vessel that is part of a heart [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "blood vessel of heart" EXACT [OBOL:automatic] +synonym: "cardiac blood vessel" RELATED [EMAPA:35397] +xref: EMAPA:35397 +xref: MA:0002483 +is_a: UBERON:0003834 ! thoracic segment blood vessel +is_a: UBERON:0005985 ! coronary vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0000948 ! heart +relationship: part_of UBERON:0018674 ! heart vasculature + +[Term] +id: UBERON:0003499 +name: brain blood vessel +def: "A blood vessel that is part of a brain [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "blood vessel of brain" EXACT [OBOL:automatic] +xref: EMAPA:35182 +xref: MA:0002769 +is_a: UBERON:0001981 ! blood vessel +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0000955 ! brain +relationship: part_of UBERON:0008998 ! vasculature of brain + +[Term] +id: UBERON:0003500 +name: corneal blood vessel +def: "A blood vessel that is part of a cornea [Automatically generated definition]." [https://orcid.org/0000-0002-6601-2165, https://sourceforge.net/tracker/index.php?func=detail&aid=3564332&group_id=36855&atid=440764] +synonym: "blood vessel of cornea" EXACT [OBOL:automatic] +synonym: "cornea blood vessel" EXACT [OBOL:automatic] +xref: EMAPA:36611 +xref: MA:0001241 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0000964 ! cornea +relationship: part_of UBERON:0000964 ! cornea +relationship: present_in_taxon NCBITaxon:9775 {source="http://www.ncbi.nlm.nih.gov/pubmed/17051153"} + +[Term] +id: UBERON:0003501 +name: retina blood vessel +def: "A blood vessel that is part of a retina [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "blood vessel of inner layer of eyeball" EXACT [OBOL:automatic] +synonym: "blood vessel of retina" EXACT [OBOL:automatic] +synonym: "blood vessel of tunica interna of eyeball" EXACT [OBOL:automatic] +synonym: "inner layer of eyeball blood vessel" EXACT [OBOL:automatic] +synonym: "retinal blood vessel" EXACT [OBOL:automatic] +synonym: "tunica interna of eyeball blood vessel" EXACT [OBOL:automatic] +xref: EMAPA:36520 +xref: GAID:509 +xref: http://www.snomedbrowser.com/Codes/Details/280692003 +xref: MA:0001317 +xref: MESH:D012171 +xref: XAO:0004153 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0000966 ! retina +relationship: contributes_to_morphology_of UBERON:0000966 ! retina +relationship: part_of UBERON:0004864 ! vasculature of retina + +[Term] +id: UBERON:0003502 +name: neck blood vessel +def: "A blood vessel that is part of a neck [Automatically generated definition]." [OBOL:automatic] +synonym: "blood vessel of neck" EXACT [OBOL:automatic] +synonym: "blood vessel of neck (volume)" EXACT [OBOL:automatic] +synonym: "neck (volume) blood vessel" EXACT [OBOL:automatic] +xref: EMAPA:37236 {source="MA:th"} +xref: MA:0000583 +is_a: UBERON:0001981 ! blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0000974 ! neck +relationship: part_of UBERON:0000974 ! neck + +[Term] +id: UBERON:0003503 +name: leg blood vessel +def: "A blood vessel that is part of a leg [Automatically generated definition]." [OBOL:automatic] +synonym: "blood vessel of leg" EXACT [OBOL:automatic] +xref: EMAPA:36500 +xref: MA:0000669 +is_a: UBERON:0003516 ! hindlimb blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0000978 ! leg +relationship: part_of UBERON:0000978 ! leg + +[Term] +id: UBERON:0003504 +name: respiratory system blood vessel +def: "A blood vessel that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +synonym: "apparatus respiratorius blood vessel" EXACT [OBOL:automatic] +synonym: "blood vessel of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "blood vessel of respiratory system" EXACT [OBOL:automatic] +xref: EMAPA:35731 +xref: EMAPA:35995 +xref: MA:0001799 +is_a: UBERON:0001981 ! blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0003505 +name: trachea blood vessel +alt_id: UBERON:0003525 +def: "A blood vessel that is part of a trachea." [OBOL:automatic] +synonym: "blood vessel of trachea" EXACT [OBOL:automatic] +xref: EMAPA:35874 +xref: MA:0001852 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0003504 ! respiratory system blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0003126 ! trachea +relationship: part_of UBERON:0003126 ! trachea + +[Term] +id: UBERON:0003506 +name: chest blood vessel +def: "A blood vessel that is part of a chest [Automatically generated definition]." [OBOL:automatic] +synonym: "anterior thoracic region blood vessel" EXACT [OBOL:automatic] +synonym: "anterolateral part of thorax blood vessel" EXACT [OBOL:automatic] +synonym: "blood vessel of anterior thoracic region" EXACT [OBOL:automatic] +synonym: "blood vessel of anterolateral part of thorax" EXACT [OBOL:automatic] +synonym: "blood vessel of chest" EXACT [OBOL:automatic] +synonym: "blood vessel of front of thorax" EXACT [OBOL:automatic] +synonym: "front of thorax blood vessel" EXACT [OBOL:automatic] +xref: EMAPA:37239 {source="MA:th"} +xref: MA:0000549 +is_a: UBERON:0003834 ! thoracic segment blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0001443 ! chest +relationship: part_of UBERON:0001443 ! chest + +[Term] +id: UBERON:0003507 +name: arm blood vessel +def: "A blood vessel that is part of an arm [Automatically generated definition]." [OBOL:automatic] +synonym: "blood vessel of arm" EXACT [OBOL:automatic] +xref: EMAPA:37293 {source="MA:th"} +xref: MA:0000591 +is_a: UBERON:0003515 ! forelimb blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0001460 ! arm +relationship: part_of UBERON:0001460 ! arm + +[Term] +id: UBERON:0003508 +name: pedal digit blood vessel +def: "A blood vessel that is part of a toe [Automatically generated definition]." [OBOL:automatic] +synonym: "blood vessel of digit of foot" EXACT [OBOL:automatic] +synonym: "blood vessel of digit of terminal segment of free lower limb" EXACT [OBOL:automatic] +synonym: "blood vessel of digitus pedis" EXACT [OBOL:automatic] +synonym: "blood vessel of foot digit" EXACT [OBOL:automatic] +synonym: "blood vessel of terminal segment of free lower limb digit" EXACT [OBOL:automatic] +synonym: "blood vessel of toe" EXACT [OBOL:automatic] +synonym: "digit of foot blood vessel" EXACT [OBOL:automatic] +synonym: "digit of terminal segment of free lower limb blood vessel" EXACT [OBOL:automatic] +synonym: "digitus pedis blood vessel" EXACT [OBOL:automatic] +synonym: "foot digit blood vessel" EXACT [MA:0000645] +synonym: "foot digit blood vessel" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit blood vessel" EXACT [OBOL:accepted] +synonym: "terminal segment of free lower limb digit blood vessel" EXACT [OBOL:automatic] +synonym: "toe blood vessel" EXACT [OBOL:automatic] +xref: EMAPA:37302 {source="MA:th"} +xref: MA:0000645 +is_a: UBERON:0003521 ! pes blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0001466 ! pedal digit +relationship: part_of UBERON:0001466 ! pedal digit + +[Term] +id: UBERON:0003509 +name: arterial blood vessel +def: "A blood vessel that is part of the arterial system. Includes artery, arteriole and aorta." [https://orcid.org/0000-0002-6601-2165] +comment: only in MA - supertype of artery, arteriole, aorta. +subset: pheno_slim +xref: EMAPA:35144 +xref: MA:0000061 +is_a: UBERON:0001981 ! blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0004572 ! arterial system +relationship: part_of UBERON:0004572 ! arterial system + +[Term] +id: UBERON:0003510 +name: eyelid blood vessel +def: "A blood vessel that is part of a eyelid [Automatically generated definition]." [OBOL:automatic] +synonym: "blepharon blood vessel" EXACT [OBOL:automatic] +synonym: "blood vessel of blepharon" EXACT [OBOL:automatic] +synonym: "blood vessel of eyelid" EXACT [OBOL:automatic] +xref: EMAPA:37388 {source="MA:th"} +xref: MA:0001250 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0001711 ! eyelid +relationship: part_of UBERON:0001711 ! eyelid + +[Term] +id: UBERON:0003511 +name: iris blood vessel +def: "A blood vessel that is part of a iris [Automatically generated definition]." [OBOL:automatic] +subset: vertebrate_core +synonym: "blood vessel of iris" EXACT [OBOL:automatic] +xref: EMAPA:37387 {source="MA:th"} +xref: MA:0001290 +xref: ZFA:0005568 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0001769 ! iris +relationship: part_of UBERON:0004118 ! vasculature of iris + +[Term] +id: UBERON:0003512 +name: lung blood vessel +def: "A blood vessel that is part of a lung [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "blood vessel of lung" EXACT [OBOL:automatic] +synonym: "pulmonary vascular element" RELATED [EMAPA:32867] +xref: EMAPA:32867 +xref: MA:0002457 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0003504 ! respiratory system blood vessel +is_a: UBERON:0003834 ! thoracic segment blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0002048 ! lung +relationship: contributes_to_morphology_of UBERON:0002048 ! lung +relationship: part_of UBERON:0002048 ! lung + +[Term] +id: UBERON:0003513 +name: trunk blood vessel +def: "A blood vessel that is part of a trunk [Automatically generated definition]." [OBOL:automatic] +synonym: "blood vessel of torso" EXACT [OBOL:automatic] +synonym: "blood vessel of trunk" EXACT [OBOL:automatic] +synonym: "torso blood vessel" EXACT [OBOL:automatic] +xref: EMAPA:37237 {source="MA:th"} +xref: MA:0000511 +is_a: UBERON:0001981 ! blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0002100 ! trunk +relationship: part_of UBERON:0002100 ! trunk + +[Term] +id: UBERON:0003514 +name: limb blood vessel +def: "A blood vessel that is part of a limb [Automatically generated definition]." [OBOL:automatic] +synonym: "blood vessel of limb" EXACT [OBOL:automatic] +xref: EMAPA:36598 +xref: MA:0000687 +is_a: UBERON:0007301 ! appendage blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0002101 ! limb +relationship: part_of UBERON:0002101 ! limb + +[Term] +id: UBERON:0003515 +name: forelimb blood vessel +def: "A blood vessel that is part of a forelimb [Automatically generated definition]." [OBOL:automatic] +synonym: "anteriormost limb blood vessel" EXACT [OBOL:automatic] +synonym: "blood vessel of anteriormost limb" EXACT [OBOL:automatic] +synonym: "blood vessel of fore limb" EXACT [OBOL:automatic] +synonym: "blood vessel of forelimb" EXACT [OBOL:automatic] +synonym: "blood vessel of upper extremity" EXACT [OBOL:automatic] +synonym: "fore limb blood vessel" EXACT [OBOL:automatic] +synonym: "wing blood vessel" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +xref: EMAPA:37292 {source="MA:th"} +xref: MA:0000611 +is_a: UBERON:0003514 ! limb blood vessel +is_a: UBERON:0007300 ! pectoral appendage blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0002102 ! forelimb +relationship: part_of UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0003516 +name: hindlimb blood vessel +def: "A blood vessel that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] +synonym: "blood vessel of hind limb" EXACT [OBOL:automatic] +synonym: "blood vessel of hindlimb" EXACT [OBOL:automatic] +synonym: "blood vessel of lower extremity" EXACT [OBOL:automatic] +synonym: "hind limb blood vessel" EXACT [OBOL:automatic] +xref: EMAPA:37298 {source="MA:th"} +xref: MA:0000659 +is_a: UBERON:0003514 ! limb blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0002103 ! hindlimb +relationship: part_of UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0003517 +name: kidney blood vessel +def: "A blood vessel that is part of a kidney [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +subset: vertebrate_core +synonym: "blood vessel of kidney" EXACT [OBOL:automatic] +synonym: "renal blood vessel" EXACT [OBOL:automatic] +xref: EMAPA:28457 +xref: MA:0001682 +xref: TAO:0005306 +xref: ZFA:0005306 +is_a: UBERON:0003497 ! abdomen blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0002113 ! kidney +relationship: part_of UBERON:0006544 ! kidney vasculature + +[Term] +id: UBERON:0003518 +name: main bronchus blood vessel +def: "A blood vessel that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "blood vessel of bronchus principalis" EXACT [OBOL:automatic] +synonym: "blood vessel of main bronchus" EXACT [OBOL:automatic] +synonym: "blood vessel of primary bronchus" EXACT [OBOL:automatic] +synonym: "blood vessel of principal bronchus" EXACT [OBOL:automatic] +synonym: "bronchus principalis blood vessel" EXACT [OBOL:automatic] +synonym: "primary bronchus blood vessel" EXACT [OBOL:automatic] +synonym: "primary bronchus vascular element" RELATED [EMAPA:16852] +synonym: "principal bronchus blood vessel" EXACT [OBOL:automatic] +synonym: "principal bronchus vascular element" RELATED [EMAPA:16852] +xref: EMAPA:16852 +xref: MA:0001844 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0003504 ! respiratory system blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0002182 ! main bronchus +relationship: part_of UBERON:0002182 ! main bronchus + +[Term] +id: UBERON:0003519 +name: thoracic cavity blood vessel +def: "A blood vessel that is part of a thoracic cavity [Automatically generated definition]." [OBOL:automatic] +synonym: "blood vessel of cavity of chest" EXACT [OBOL:automatic] +synonym: "blood vessel of cavity of thorax" EXACT [OBOL:automatic] +synonym: "blood vessel of chest cavity" EXACT [OBOL:automatic] +synonym: "blood vessel of pectoral cavity" EXACT [OBOL:automatic] +synonym: "blood vessel of thoracic cavity" EXACT [OBOL:automatic] +synonym: "cavity of chest blood vessel" EXACT [OBOL:automatic] +synonym: "cavity of thorax blood vessel" EXACT [OBOL:automatic] +synonym: "chest cavity blood vessel" EXACT [OBOL:automatic] +synonym: "pectoral cavity blood vessel" EXACT [OBOL:automatic] +xref: EMAPA:37240 {source="MA:th"} +xref: MA:0000554 +is_a: UBERON:0001981 ! blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: located_in UBERON:0002224 ! thoracic cavity +relationship: located_in UBERON:0002224 ! thoracic cavity + +[Term] +id: UBERON:0003520 +name: pelvis blood vessel +def: "A blood vessel that is part of a pelvis [Automatically generated definition]." [OBOL:automatic] +synonym: "blood vessel of pelvis" EXACT [OBOL:automatic] +xref: EMAPA:37244 {source="MA:th"} +xref: MA:0000531 +is_a: UBERON:0003835 ! abdominal segment blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0002355 ! pelvic region of trunk +relationship: part_of UBERON:0002355 ! pelvic region of trunk + +[Term] +id: UBERON:0003521 +name: pes blood vessel +def: "A blood vessel that is part of a foot [Automatically generated definition]." [OBOL:automatic] +synonym: "blood vessel of foot" EXACT [OBOL:automatic] +synonym: "foot blood vessel" EXACT [MA:0000642] +xref: EMAPA:37301 {source="MA:th"} +xref: MA:0000642 +is_a: UBERON:0003516 ! hindlimb blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0002387 ! pes +relationship: part_of UBERON:0002387 ! pes + +[Term] +id: UBERON:0003522 +name: manual digit blood vessel +def: "A blood vessel that is part of a finger [Automatically generated definition]." [OBOL:automatic] +synonym: "blood vessel of digit of terminal segment of free upper limb" EXACT [OBOL:automatic] +synonym: "blood vessel of terminal segment of free upper limb digit" EXACT [OBOL:automatic] +synonym: "digit of terminal segment of free upper limb blood vessel" EXACT [OBOL:automatic] +synonym: "finger blood vessel" EXACT [OBOL:automatic] +synonym: "hand digit blood vessel" EXACT [MA:0000621] +synonym: "hand digit blood vessel" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "terminal segment of free upper limb digit blood vessel" EXACT [OBOL:automatic] +xref: EMAPA:37297 {source="MA:th"} +xref: MA:0000621 +is_a: UBERON:0003523 ! manus blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0002389 ! manual digit +relationship: part_of UBERON:0002389 ! manual digit + +[Term] +id: UBERON:0003523 +name: manus blood vessel +def: "A blood vessel that is part of a manus [Automatically generated definition]." [OBOL:automatic] +synonym: "blood vessel of hand" EXACT [OBOL:automatic] +synonym: "blood vessel of manus" EXACT [OBOL:automatic] +synonym: "hand blood vessel" EXACT [MA:0000618] +xref: EMAPA:37296 {source="MA:th"} +xref: MA:0000618 +is_a: UBERON:0003515 ! forelimb blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0002398 ! manus +relationship: part_of UBERON:0002398 ! manus + +[Term] +id: UBERON:0003524 +name: tail blood vessel +def: "A blood vessel that is part of a tail [Automatically generated definition]." [OBOL:automatic] +synonym: "blood vessel of post-vent region" EXACT [OBOL:automatic] +synonym: "blood vessel of tail" EXACT [OBOL:automatic] +synonym: "post-vent region blood vessel" EXACT [OBOL:automatic] +xref: EMAPA:35848 +xref: MA:0000695 +is_a: UBERON:0001981 ! blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0007812 ! post-anal tail +relationship: part_of UBERON:0007812 ! post-anal tail + +[Term] +id: UBERON:0003526 +name: respiratory system capillary +def: "A capillary that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +synonym: "apparatus respiratorius blood capillary" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius capillary" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius capillary vessel" EXACT [OBOL:automatic] +synonym: "blood capillary of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "blood capillary of respiratory system" EXACT [OBOL:automatic] +synonym: "capillary of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "capillary of respiratory system" EXACT [OBOL:automatic] +synonym: "capillary vessel of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "capillary vessel of respiratory system" EXACT [OBOL:automatic] +synonym: "respiratory system blood capillary" EXACT [OBOL:automatic] +synonym: "respiratory system capillary vessel" EXACT [OBOL:automatic] +xref: EMAPA:37574 {source="MA:th"} +xref: MA:0001807 +is_a: UBERON:0001982 ! capillary +is_a: UBERON:0003504 ! respiratory system blood vessel +intersection_of: UBERON:0001982 ! capillary +intersection_of: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0003527 +name: kidney capillary +def: "A capillary that is part of a kidney [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "blood capillary of kidney" EXACT [OBOL:automatic] +synonym: "capillary of kidney" EXACT [OBOL:automatic] +synonym: "capillary vessel of kidney" EXACT [OBOL:automatic] +synonym: "kidney blood capillary" EXACT [OBOL:automatic] +synonym: "kidney capillary vessel" EXACT [OBOL:automatic] +synonym: "renal capillary" EXACT [OBOL:automatic] +xref: EMAPA:31443 +xref: http://www.snomedbrowser.com/Codes/Details/275409003 +xref: MA:0002586 +is_a: UBERON:0001982 ! capillary +is_a: UBERON:0003517 ! kidney blood vessel +intersection_of: UBERON:0001982 ! capillary +intersection_of: part_of UBERON:0002113 ! kidney + +[Term] +id: UBERON:0003528 +name: brain gray matter +def: "A gray matter that is part of a brain [Automatically generated definition]." [OBOL:automatic] +synonym: "brain grey matter" EXACT [MA:0000810] +synonym: "brain grey substance" EXACT [OBOL:automatic] +synonym: "gray matter of brain" EXACT [OBOL:automatic] +synonym: "grey matter of brain" EXACT [OBOL:automatic] +synonym: "grey substance of brain" EXACT [OBOL:automatic] +xref: EMAPA:35184 +xref: http://linkedlifedata.com/resource/umls/id/C1707348 +xref: MA:0000810 +xref: NCIT:C49333 +xref: UMLS:C1707348 {source="ncithesaurus:Cerebral_Gray_Matter"} +is_a: UBERON:0002020 ! gray matter +intersection_of: UBERON:0002020 ! gray matter +intersection_of: part_of UBERON:0000955 ! brain +relationship: part_of UBERON:0000955 ! brain + +[Term] +id: UBERON:0003529 +name: respiratory system lymphatic vessel endothelium +def: "An lymphatic vessel endothelium that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +synonym: "apparatus respiratorius endothelium of lymph vessel" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius lymph vessel endothelium" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius lymphatic vessel endothelium" EXACT [OBOL:automatic] +synonym: "endothelium of lymph vessel of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "endothelium of lymph vessel of respiratory system" EXACT [OBOL:automatic] +synonym: "lymph vessel endothelium of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "lymph vessel endothelium of respiratory system" EXACT [OBOL:automatic] +synonym: "lymphatic vessel endothelium of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "lymphatic vessel endothelium of respiratory system" EXACT [OBOL:automatic] +synonym: "respiratory system endothelium of lymph vessel" EXACT [OBOL:automatic] +synonym: "respiratory system lymph vessel endothelium" EXACT [OBOL:automatic] +synonym: "respiratory system lymphatic vessel endothelium" EXACT [OBOL:automatic] +xref: EMAPA:37581 {source="MA:th"} +xref: MA:0001825 +is_a: UBERON:0002042 ! lymphatic vessel endothelium +is_a: UBERON:0004807 ! respiratory system epithelium +intersection_of: UBERON:0002042 ! lymphatic vessel endothelium +intersection_of: part_of UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0003456 ! respiratory system lymphatic vessel + +[Term] +id: UBERON:0003530 +name: pedal digit skin +def: "A zone of skin that is part of a toe [Automatically generated definition]." [OBOL:automatic] +synonym: "digit of foot skin" EXACT [OBOL:automatic] +synonym: "digit of terminal segment of free lower limb skin" EXACT [OBOL:automatic] +synonym: "digitus pedis skin" EXACT [OBOL:automatic] +synonym: "foot digit skin" EXACT [MA:0000650] +synonym: "foot digit skin" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit skin" EXACT [OBOL:accepted] +synonym: "skin of digit of foot" EXACT [OBOL:automatic] +synonym: "skin of digit of terminal segment of free lower limb" EXACT [OBOL:automatic] +synonym: "skin of digitus pedis" EXACT [OBOL:automatic] +synonym: "skin of foot digit" EXACT [OBOL:automatic] +synonym: "skin of terminal segment of free lower limb digit" EXACT [OBOL:automatic] +synonym: "skin of toe" EXACT [OBOL:automatic] +synonym: "terminal segment of free lower limb digit skin" EXACT [OBOL:automatic] +synonym: "toe skin" EXACT [OBOL:automatic] +xref: EMAPA:32942 +xref: FMA:37852 +xref: http://linkedlifedata.com/resource/umls/id/C1708089 +xref: http://www.snomedbrowser.com/Codes/Details/181530005 +xref: MA:0000650 +xref: NCIT:C52719 +xref: UMLS:C1708089 {source="ncithesaurus:Foot_Digit_Skin"} +is_a: UBERON:0001513 ! skin of pes +is_a: UBERON:0015249 ! digit skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0001466 ! pedal digit +relationship: part_of UBERON:0001466 ! pedal digit + +[Term] +id: UBERON:0003531 +name: forelimb skin +def: "A zone of skin that is part of a forelimb [Automatically generated definition]." [OBOL:automatic] +synonym: "anteriormost limb skin" EXACT [OBOL:automatic] +synonym: "fore limb skin" EXACT [OBOL:automatic] +synonym: "skin of fore limb" EXACT [OBOL:automatic] +synonym: "skin of forelimb" EXACT [OBOL:automatic] +synonym: "skin of upper limb" EXACT [FMA:23101] +synonym: "upper limb skin" EXACT [FMA:23101] +synonym: "wing skin" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +xref: EMAPA:32612 +xref: FMA:23101 +xref: http://linkedlifedata.com/resource/umls/id/C0222212 +xref: http://www.snomedbrowser.com/Codes/Details/244130001 +xref: MA:0000617 +xref: NCIT:C12296 +xref: UMLS:C0222212 {source="ncithesaurus:Skin_of_the_Upper_Limb_and_Shoulder"} +is_a: UBERON:0001419 ! skin of limb +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0002102 ! forelimb +relationship: part_of UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0003532 +name: hindlimb skin +def: "A zone of skin that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] +synonym: "hind limb skin" EXACT [OBOL:automatic] +synonym: "lower limb skin" EXACT [FMA:23102] +synonym: "skin of hind limb" EXACT [OBOL:automatic] +synonym: "skin of hindlimb" EXACT [OBOL:automatic] +synonym: "skin of lower extremity" EXACT [OBOL:automatic] +synonym: "skin of lower limb" EXACT [FMA:23102] +xref: EMAPA:32620 +xref: FMA:23102 +xref: http://linkedlifedata.com/resource/umls/id/C0222268 +xref: http://www.snomedbrowser.com/Codes/Details/181528008 +xref: MA:0000665 +xref: NCIT:C12297 +xref: UMLS:C0222268 {source="ncithesaurus:Skin_of_the_Lower_Limb_and_Hip"} +is_a: UBERON:0001419 ! skin of limb +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0002103 ! hindlimb +relationship: part_of UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0003533 +name: manual digit skin +def: "A zone of skin that is part of a finger [Automatically generated definition]." [OBOL:automatic] +synonym: "digit of hand skin" EXACT [OBOL:automatic] +synonym: "digit of terminal segment of free upper limb skin" EXACT [OBOL:automatic] +synonym: "digitus manus skin" EXACT [OBOL:automatic] +synonym: "finger skin" EXACT [OBOL:automatic] +synonym: "fore limb digit skin" EXACT [OBOL:accepted] +synonym: "hand digit skin" EXACT [MA:0000626] +synonym: "hand digit skin" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "skin of digit of hand" EXACT [OBOL:automatic] +synonym: "skin of digit of terminal segment of free upper limb" EXACT [OBOL:automatic] +synonym: "skin of digitus manus" EXACT [OBOL:automatic] +synonym: "skin of finger" EXACT [OBOL:automatic] +synonym: "skin of hand digit" EXACT [OBOL:automatic] +synonym: "skin of terminal segment of free upper limb digit" EXACT [OBOL:automatic] +synonym: "terminal segment of free upper limb digit skin" EXACT [OBOL:automatic] +xref: EMAPA:32648 +xref: FMA:38304 +xref: http://linkedlifedata.com/resource/umls/id/C1708318 +xref: http://www.snomedbrowser.com/Codes/Details/361711001 +xref: MA:0000626 +xref: NCIT:C52720 +xref: UMLS:C1708318 {source="ncithesaurus:Hand_Digit_Skin"} +is_a: UBERON:0001519 ! skin of manus +is_a: UBERON:0015249 ! digit skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0002389 ! manual digit +relationship: part_of UBERON:0002389 ! manual digit + +[Term] +id: UBERON:0003534 +name: tail skin +def: "A zone of skin that is part of a tail [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "post-vent region skin" EXACT [OBOL:automatic] +synonym: "skin of post-vent region" EXACT [OBOL:automatic] +synonym: "skin of tail" EXACT [OBOL:automatic] +xref: EMAPA:36502 +xref: http://www.snomedbrowser.com/Codes/Details/67214004 +xref: MA:0000700 +is_a: UBERON:0000014 ! zone of skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0007812 ! post-anal tail +relationship: part_of UBERON:0007812 ! post-anal tail + +[Term] +id: UBERON:0003535 +name: vagus X nerve trunk +alt_id: UBERON:0006308 +def: "A nerve trunk that is part of a vagus nerve." [OBOL:automatic] +synonym: "trunk of vagal nerve" EXACT [] +synonym: "trunk of vagus nerve" EXACT [FMA:6221] +synonym: "vagal nerve trunk" EXACT [EMAPA:17272] +synonym: "vagal X nerve trunk" EXACT [EMAPA:17272] +synonym: "vagus nerve trunk" EXACT [] +synonym: "vagus neural trunk" EXACT [FMA:6221] +xref: EHDAA2:0002160 +xref: EHDAA:4659 +xref: EMAPA:17272 +xref: FMA:6221 +xref: http://www.snomedbrowser.com/Codes/Details/280308004 +xref: MA:0001150 +xref: VHOG:0000736 +is_a: UBERON:0002464 ! nerve trunk +intersection_of: UBERON:0002464 ! nerve trunk +intersection_of: part_of UBERON:0001759 ! vagus nerve +relationship: part_of UBERON:0001759 ! vagus nerve + +[Term] +id: UBERON:0003536 +name: right lung alveolar duct +def: "An alveolar duct that is part of a right lung [Automatically generated definition]." [OBOL:automatic] +synonym: "alveolar duct of right lung" EXACT [OBOL:automatic] +xref: EMAPA:35819 +xref: http://linkedlifedata.com/resource/umls/id/C1709958 +xref: MA:0001785 +xref: NCIT:C49277 +xref: UMLS:C1709958 {source="ncithesaurus:Right_Lung_Alveolar_Duct"} +is_a: UBERON:0002173 ! pulmonary alveolar duct +intersection_of: UBERON:0002173 ! pulmonary alveolar duct +intersection_of: part_of UBERON:0002167 ! right lung +relationship: part_of UBERON:0006526 ! right lung alveolar system + +[Term] +id: UBERON:0003537 +name: left lung alveolar duct +def: "An alveolar duct that is part of a left lung [Automatically generated definition]." [OBOL:automatic] +comment: Mice have 1 left lobe +synonym: "alveolar duct of left lung" EXACT [OBOL:automatic] +xref: EMAPA:19183 +xref: http://linkedlifedata.com/resource/umls/id/C1708672 +xref: MA:0001776 +xref: NCIT:C49250 +xref: UMLS:C1708672 {source="ncithesaurus:Left_Lung_Alveolar_Duct"} +is_a: UBERON:0002173 ! pulmonary alveolar duct +intersection_of: UBERON:0002173 ! pulmonary alveolar duct +intersection_of: part_of UBERON:0002168 ! left lung +relationship: part_of UBERON:0006525 ! left lung alveolar system + +[Term] +id: UBERON:0003538 +name: right lung bronchiole +def: "A bronchiole that is part of a right lung [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchiole of right lung" EXACT [OBOL:automatic] +synonym: "lobular bronchiole of right lung" EXACT [OBOL:automatic] +synonym: "right lung lobular bronchiole" EXACT [OBOL:automatic] +xref: EMAPA:35425 +xref: http://linkedlifedata.com/resource/umls/id/C0225670 +xref: http://www.snomedbrowser.com/Codes/Details/200089000 +xref: MA:0001787 +xref: NCIT:C49279 +xref: UMLS:C0225670 {source="ncithesaurus:Right_Lung_Bronchiole"} +is_a: UBERON:0002186 ! bronchiole +intersection_of: UBERON:0002186 ! bronchiole +intersection_of: part_of UBERON:0002167 ! right lung +relationship: part_of UBERON:0002167 ! right lung + +[Term] +id: UBERON:0003539 +name: left lung bronchiole +def: "A bronchiole that is part of a left lung [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchiole of left lung" EXACT [OBOL:automatic] +synonym: "left lung lobular bronchiole" EXACT [OBOL:automatic] +synonym: "lobular bronchiole of left lung" EXACT [OBOL:automatic] +xref: EMAPA:19000 +xref: http://linkedlifedata.com/resource/umls/id/C0225674 +xref: http://www.snomedbrowser.com/Codes/Details/200484003 +xref: MA:0001778 +xref: NCIT:C49252 +xref: UMLS:C0225674 {source="ncithesaurus:Left_Lung_Bronchiole"} +is_a: UBERON:0002186 ! bronchiole +intersection_of: UBERON:0002186 ! bronchiole +intersection_of: part_of UBERON:0002168 ! left lung +relationship: part_of UBERON:0002168 ! left lung + +[Term] +id: UBERON:0003540 +name: right lung terminal bronchiole +def: "A terminal bronchiole that is part of a right lung [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchiolus terminalis of right lung" EXACT [OBOL:automatic] +synonym: "right lung bronchiolus terminalis" EXACT [OBOL:automatic] +synonym: "terminal bronchiole of right lung" EXACT [OBOL:automatic] +xref: EMAPA:36638 +xref: http://linkedlifedata.com/resource/umls/id/C1709961 +xref: MA:0001789 +xref: NCIT:C49294 +xref: UMLS:C1709961 {source="ncithesaurus:Right_Lung_Terminal_Bronchiole"} +is_a: UBERON:0002187 ! terminal bronchiole +is_a: UBERON:0003538 ! right lung bronchiole +intersection_of: UBERON:0002187 ! terminal bronchiole +intersection_of: part_of UBERON:0002167 ! right lung + +[Term] +id: UBERON:0003541 +name: left lung terminal bronchiole +def: "A terminal bronchiole that is part of a left lung [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchiolus terminalis of left lung" EXACT [OBOL:automatic] +synonym: "left lung bronchiolus terminalis" EXACT [OBOL:automatic] +synonym: "terminal bronchiole of left lung" EXACT [OBOL:automatic] +xref: EMAPA:36636 +xref: http://linkedlifedata.com/resource/umls/id/C1708675 +xref: MA:0001780 +xref: NCIT:C49255 +xref: UMLS:C1708675 {source="ncithesaurus:Left_Lung_Terminal_Bronchiole"} +is_a: UBERON:0002187 ! terminal bronchiole +is_a: UBERON:0003539 ! left lung bronchiole +intersection_of: UBERON:0002187 ! terminal bronchiole +intersection_of: part_of UBERON:0002168 ! left lung + +[Term] +id: UBERON:0003542 +name: right lung respiratory bronchiole +def: "A respiratory bronchiole that is part of a right lung [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchiolus respiratorius of right lung" EXACT [OBOL:automatic] +synonym: "respiratory bronchiole of right lung" EXACT [OBOL:automatic] +synonym: "right lung bronchiolus respiratorius" EXACT [OBOL:automatic] +xref: EMAPA:36637 +xref: http://linkedlifedata.com/resource/umls/id/C1709960 +xref: MA:0001788 +xref: NCIT:C49285 +xref: UMLS:C1709960 {source="ncithesaurus:Right_Lung_Respiratory_Bronchiole"} +is_a: UBERON:0002188 ! respiratory bronchiole +is_a: UBERON:0003538 ! right lung bronchiole +intersection_of: UBERON:0002188 ! respiratory bronchiole +intersection_of: part_of UBERON:0002167 ! right lung + +[Term] +id: UBERON:0003543 +name: left lung respiratory bronchiole +def: "A respiratory bronchiole that is part of a left lung [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchiolus respiratorius of left lung" EXACT [OBOL:automatic] +synonym: "left lung bronchiolus respiratorius" EXACT [OBOL:automatic] +synonym: "respiratory bronchiole of left lung" EXACT [OBOL:automatic] +xref: EMAPA:36635 +xref: http://linkedlifedata.com/resource/umls/id/C1708674 +xref: MA:0001779 +xref: NCIT:C49254 +xref: UMLS:C1708674 {source="ncithesaurus:Left_Lung_Respiratory_Bronchiole"} +is_a: UBERON:0002188 ! respiratory bronchiole +is_a: UBERON:0003539 ! left lung bronchiole +intersection_of: UBERON:0002188 ! respiratory bronchiole +intersection_of: part_of UBERON:0002168 ! left lung + +[Term] +id: UBERON:0003544 +name: brain white matter +def: "The regions of the brain that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008026] +subset: pheno_slim +synonym: "brain white matter of neuraxis" EXACT [OBOL:automatic] +synonym: "brain white substance" EXACT [OBOL:automatic] +synonym: "white matter of brain" EXACT [OBOL:automatic] +synonym: "white matter of neuraxis of brain" EXACT [OBOL:automatic] +synonym: "white substance of brain" EXACT [OBOL:automatic] +xref: EMAPA:35187 +xref: HBA:9218 +xref: http://linkedlifedata.com/resource/umls/id/C1706995 +xref: MA:0000820 +xref: NCIT:C49334 +xref: UMLS:C1706995 {source="ncithesaurus:Brain_White_Matter"} +is_a: UBERON:0002316 ! white matter +intersection_of: UBERON:0002316 ! white matter +intersection_of: part_of UBERON:0000955 ! brain +relationship: contributes_to_morphology_of UBERON:0000955 ! brain +relationship: part_of UBERON:0000955 ! brain + +[Term] +id: UBERON:0003545 +name: obsolete brainstem white matter +comment: obsoleted as definition is unclear. cerebellar peduncle originally classified here but in ABA brainstem and cerbellum are spatially disjoint +is_obsolete: true +consider: MA:0002741 + +[Term] +id: UBERON:0003546 +name: distal convoluted tubule macula densa +def: "A macula densa that is part of a distal convoluted tubule [Automatically generated definition]." [OBOL:automatic] +xref: MA:0001668 +is_a: UBERON:0002335 ! macula densa +is_a: UBERON:0012275 ! meso-epithelium +intersection_of: UBERON:0002335 ! macula densa +intersection_of: part_of UBERON:0001292 ! distal convoluted tubule +relationship: part_of UBERON:0001292 {source="MA"} ! distal convoluted tubule + +[Term] +id: UBERON:0003547 +name: brain meninx +def: "A meninx that is part of a brain [Automatically generated definition]." [OBOL:automatic] +subset: organ_slim +subset: pheno_slim +synonym: "brain meninges" EXACT [OBOL:automatic] +synonym: "meninges of brain" EXACT [OBOL:automatic] +synonym: "meninx of brain" EXACT [OBOL:automatic] +xref: CALOHA:TS-2147 +xref: EMAPA:32662 +xref: EV:0100312 +xref: http://www.snomedbrowser.com/Codes/Details/180949007 +xref: MA:0000813 +xref: VHOG:0000013 +is_a: UBERON:0002360 ! meninx +intersection_of: UBERON:0002360 ! meninx +intersection_of: part_of UBERON:0000955 ! brain +relationship: part_of UBERON:0000955 ! brain + +[Term] +id: UBERON:0003548 +name: forebrain meninges +def: "A meninx that is part of a forebrain [Automatically generated definition]." [OBOL:automatic] +synonym: "forebrain meninx" EXACT [OBOL:automatic] +synonym: "meninges of forebrain" EXACT [OBOL:automatic] +synonym: "meninx of forebrain" EXACT [OBOL:automatic] +xref: EMAPA:17764 +xref: EMAPA:17774 +xref: EMAPA:37543 {source="MA:th"} +xref: MA:0000883 +is_a: UBERON:0003547 ! brain meninx +intersection_of: UBERON:0002360 ! meninx +intersection_of: part_of UBERON:0001890 ! forebrain +relationship: part_of UBERON:0001890 ! forebrain + +[Term] +id: UBERON:0003549 +name: brain pia mater +def: "The fibrous membrane forming the innermost of the three coverings that surrounds the brain within the cranial cavity that is firmly attached to the glial capsule." [MP:0009026] +subset: pheno_slim +synonym: "brain pia mater of neuraxis" EXACT [OBOL:automatic] +synonym: "pia mater of brain" EXACT [OBOL:automatic] +synonym: "pia mater of neuraxis of brain" EXACT [OBOL:automatic] +xref: EMAPA:32667 +xref: EV:0100315 +xref: http://linkedlifedata.com/resource/umls/id/C1706994 +xref: MA:0000816 +xref: NCIT:C49335 +xref: UMLS:C1706994 {source="ncithesaurus:Brain_Pia_Mater"} +xref: VHOG:0000470 +is_a: UBERON:0002361 ! pia mater +is_a: UBERON:0003547 ! brain meninx +intersection_of: UBERON:0002361 ! pia mater +intersection_of: part_of UBERON:0000955 ! brain + +[Term] +id: UBERON:0003550 +name: forebrain pia mater +def: "A pia mater that is part of a forebrain [Automatically generated definition]." [OBOL:automatic] +synonym: "forebrain pia mater of neuraxis" EXACT [OBOL:automatic] +synonym: "pia mater of forebrain" EXACT [OBOL:automatic] +synonym: "pia mater of neuraxis of forebrain" EXACT [OBOL:automatic] +xref: EMAPA:17767 +xref: EMAPA:17777 +xref: EMAPA:37546 {source="MA:th"} +xref: MA:0000886 +is_a: UBERON:0003548 ! forebrain meninges +is_a: UBERON:0003549 ! brain pia mater +intersection_of: UBERON:0002361 ! pia mater +intersection_of: part_of UBERON:0001890 ! forebrain + +[Term] +id: UBERON:0003551 +name: midbrain pia mater +def: "A pia mater that is part of a midbrain [Automatically generated definition]." [OBOL:automatic] +synonym: "mesencephalon pia mater" RELATED [VHOG:0000467] +synonym: "midbrain pia mater of neuraxis" EXACT [OBOL:automatic] +synonym: "pia mater of midbrain" EXACT [OBOL:automatic] +synonym: "pia mater of neuraxis of midbrain" EXACT [OBOL:automatic] +xref: EHDAA2:0001175 +xref: EMAPA:17794 +xref: MA:0001061 +xref: RETIRED_EHDAA2:0001110 +xref: VHOG:0000467 +is_a: UBERON:0003288 ! meninx of midbrain +is_a: UBERON:0003549 ! brain pia mater +intersection_of: UBERON:0002361 ! pia mater +intersection_of: part_of UBERON:0001891 ! midbrain + +[Term] +id: UBERON:0003552 +name: telencephalon pia mater +def: "A pia mater that is part of a telencephalon [Automatically generated definition]." [OBOL:automatic] +synonym: "pia mater of neuraxis of telencephalon" EXACT [OBOL:automatic] +synonym: "pia mater of telencephalon" EXACT [OBOL:automatic] +synonym: "telencephalon pia mater of neuraxis" EXACT [OBOL:automatic] +xref: EHDAA2:0001992 +xref: EMAPA:17777 +xref: MA:0000982 +xref: VHOG:0000476 +is_a: UBERON:0003289 ! meninx of telencephalon +is_a: UBERON:0003550 ! forebrain pia mater +intersection_of: UBERON:0002361 ! pia mater +intersection_of: part_of UBERON:0001893 ! telencephalon + +[Term] +id: UBERON:0003553 +name: diencephalon pia mater +def: "A pia mater that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] +synonym: "between brain pia mater" EXACT [OBOL:automatic] +synonym: "between brain pia mater of neuraxis" EXACT [OBOL:automatic] +synonym: "diencephalon pia mater of neuraxis" EXACT [OBOL:automatic] +synonym: "interbrain pia mater" EXACT [OBOL:automatic] +synonym: "interbrain pia mater of neuraxis" EXACT [OBOL:automatic] +synonym: "mature diencephalon pia mater" EXACT [OBOL:automatic] +synonym: "mature diencephalon pia mater of neuraxis" EXACT [OBOL:automatic] +synonym: "pia mater of between brain" EXACT [OBOL:automatic] +synonym: "pia mater of diencephalon" EXACT [OBOL:automatic] +synonym: "pia mater of interbrain" EXACT [OBOL:automatic] +synonym: "pia mater of mature diencephalon" EXACT [OBOL:automatic] +synonym: "pia mater of neuraxis of between brain" EXACT [OBOL:automatic] +synonym: "pia mater of neuraxis of diencephalon" EXACT [OBOL:automatic] +synonym: "pia mater of neuraxis of interbrain" EXACT [OBOL:automatic] +synonym: "pia mater of neuraxis of mature diencephalon" EXACT [OBOL:automatic] +xref: EHDAA2:0000400 +xref: EMAPA:17767 +xref: MA:0000829 +xref: VHOG:0000475 +is_a: UBERON:0003290 ! meninx of diencephalon +is_a: UBERON:0003550 ! forebrain pia mater +intersection_of: UBERON:0002361 ! pia mater +intersection_of: part_of UBERON:0001894 ! diencephalon + +[Term] +id: UBERON:0003554 +name: hindbrain pia mater +def: "A pia mater that is part of a hindbrain [Automatically generated definition]." [OBOL:automatic] +synonym: "hindbrain pia mater of neuraxis" EXACT [OBOL:automatic] +synonym: "pia mater of hindbrain" EXACT [OBOL:automatic] +synonym: "pia mater of neuraxis of hindbrain" EXACT [OBOL:automatic] +synonym: "rhombencephalon pia mater" RELATED [VHOG:0000466] +xref: EHDAA2:0000772 +xref: EMAPA:17786 +xref: MA:0000990 +xref: VHOG:0000466 +is_a: UBERON:0003291 ! meninx of hindbrain +is_a: UBERON:0003549 ! brain pia mater +intersection_of: UBERON:0002361 ! pia mater +intersection_of: part_of UBERON:0002028 ! hindbrain + +[Term] +id: UBERON:0003555 +name: spinal cord pia mater +def: "A pia mater that is part of a spinal cord [Automatically generated definition]." [OBOL:automatic] +subset: organ_slim +synonym: "pia mater of neuraxis of spinal cord" EXACT [OBOL:automatic] +synonym: "pia mater of spinal cord" EXACT [OBOL:automatic] +synonym: "spinal cord pia mater of neuraxis" EXACT [OBOL:automatic] +xref: EHDAA2:0001896 +xref: EMAPA:17807 +xref: http://linkedlifedata.com/resource/umls/id/C1710148 +xref: MA:0001133 +xref: NCIT:C49800 +xref: UMLS:C1710148 {source="ncithesaurus:Spinal_Cord_Pia_Mater"} +xref: VHOG:0000468 +is_a: UBERON:0002361 ! pia mater +is_a: UBERON:0003292 ! meninx of spinal cord +intersection_of: UBERON:0002361 ! pia mater +intersection_of: part_of UBERON:0002240 ! spinal cord + +[Term] +id: UBERON:0003556 +name: forebrain arachnoid mater +def: "An arachnoid mater that is part of a forebrain [Automatically generated definition]." [OBOL:automatic] +synonym: "arachnoid mater of forebrain" EXACT [OBOL:automatic] +synonym: "arachnoid mater of neuraxis of forebrain" EXACT [OBOL:automatic] +synonym: "arachnoid of forebrain" EXACT [OBOL:automatic] +synonym: "forebrain arachnoid" EXACT [OBOL:automatic] +synonym: "forebrain arachnoid mater of neuraxis" EXACT [OBOL:automatic] +xref: EMAPA:17765 +xref: EMAPA:17775 +xref: EMAPA:37544 {source="MA:th"} +xref: MA:0000884 +is_a: UBERON:0002362 ! arachnoid mater +is_a: UBERON:0003548 ! forebrain meninges +intersection_of: UBERON:0002362 ! arachnoid mater +intersection_of: part_of UBERON:0001890 ! forebrain + +[Term] +id: UBERON:0003557 +name: midbrain arachnoid mater +def: "An arachnoid mater that is part of a midbrain [Automatically generated definition]." [OBOL:automatic] +synonym: "arachnoid mater of midbrain" EXACT [OBOL:automatic] +synonym: "arachnoid mater of neuraxis of midbrain" EXACT [OBOL:automatic] +synonym: "arachnoid of midbrain" EXACT [OBOL:automatic] +synonym: "mesencephalon arachnoid mater" RELATED [VHOG:0000233] +synonym: "midbrain arachnoid" EXACT [OBOL:automatic] +synonym: "midbrain arachnoid mater of neuraxis" EXACT [OBOL:automatic] +xref: EMAPA:17792 +xref: MA:0001059 +xref: VHOG:0000233 +is_a: UBERON:0002362 ! arachnoid mater +is_a: UBERON:0003288 ! meninx of midbrain +intersection_of: UBERON:0002362 ! arachnoid mater +intersection_of: part_of UBERON:0001891 ! midbrain + +[Term] +id: UBERON:0003558 +name: diencephalon arachnoid mater +def: "An arachnoid mater that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] +synonym: "arachnoid mater of between brain" EXACT [OBOL:automatic] +synonym: "arachnoid mater of diencephalon" EXACT [OBOL:automatic] +synonym: "arachnoid mater of interbrain" EXACT [OBOL:automatic] +synonym: "arachnoid mater of mature diencephalon" EXACT [OBOL:automatic] +synonym: "arachnoid mater of neuraxis of between brain" EXACT [OBOL:automatic] +synonym: "arachnoid mater of neuraxis of diencephalon" EXACT [OBOL:automatic] +synonym: "arachnoid mater of neuraxis of interbrain" EXACT [OBOL:automatic] +synonym: "arachnoid mater of neuraxis of mature diencephalon" EXACT [OBOL:automatic] +synonym: "arachnoid of between brain" EXACT [OBOL:automatic] +synonym: "arachnoid of diencephalon" EXACT [OBOL:automatic] +synonym: "arachnoid of interbrain" EXACT [OBOL:automatic] +synonym: "arachnoid of mature diencephalon" EXACT [OBOL:automatic] +synonym: "between brain arachnoid" EXACT [OBOL:automatic] +synonym: "between brain arachnoid mater" EXACT [OBOL:automatic] +synonym: "between brain arachnoid mater of neuraxis" EXACT [OBOL:automatic] +synonym: "diencephalon arachnoid" EXACT [OBOL:automatic] +synonym: "diencephalon arachnoid mater of neuraxis" EXACT [OBOL:automatic] +synonym: "interbrain arachnoid" EXACT [OBOL:automatic] +synonym: "interbrain arachnoid mater" EXACT [OBOL:automatic] +synonym: "interbrain arachnoid mater of neuraxis" EXACT [OBOL:automatic] +synonym: "mature diencephalon arachnoid" EXACT [OBOL:automatic] +synonym: "mature diencephalon arachnoid mater" EXACT [OBOL:automatic] +synonym: "mature diencephalon arachnoid mater of neuraxis" EXACT [OBOL:automatic] +xref: EMAPA:17765 +xref: MA:0000827 +xref: VHOG:0000231 +is_a: UBERON:0003290 ! meninx of diencephalon +is_a: UBERON:0003556 ! forebrain arachnoid mater +intersection_of: UBERON:0002362 ! arachnoid mater +intersection_of: part_of UBERON:0001894 ! diencephalon + +[Term] +id: UBERON:0003559 +name: hindbrain arachnoid mater +def: "An arachnoid mater that is part of a hindbrain [Automatically generated definition]." [OBOL:automatic] +synonym: "arachnoid mater of hindbrain" EXACT [OBOL:automatic] +synonym: "arachnoid mater of neuraxis of hindbrain" EXACT [OBOL:automatic] +synonym: "arachnoid of hindbrain" EXACT [OBOL:automatic] +synonym: "hindbrain arachnoid" EXACT [OBOL:automatic] +synonym: "hindbrain arachnoid mater of neuraxis" EXACT [OBOL:automatic] +synonym: "rhombencephalon arachnoid mater" RELATED [VHOG:0000236] +xref: EMAPA:17784 +xref: MA:0000988 +xref: VHOG:0000236 +is_a: UBERON:0002362 ! arachnoid mater +is_a: UBERON:0003291 ! meninx of hindbrain +intersection_of: UBERON:0002362 ! arachnoid mater +intersection_of: part_of UBERON:0002028 ! hindbrain + +[Term] +id: UBERON:0003560 +name: spinal cord arachnoid mater +def: "An arachnoid mater that is part of a spinal cord [Automatically generated definition]." [OBOL:automatic] +subset: organ_slim +synonym: "arachnoid mater of neuraxis of spinal cord" EXACT [OBOL:automatic] +synonym: "arachnoid mater of spinal cord" EXACT [OBOL:automatic] +synonym: "arachnoid of spinal cord" EXACT [OBOL:automatic] +synonym: "spinal cord arachnoid" EXACT [OBOL:automatic] +synonym: "spinal cord arachnoid mater of neuraxis" EXACT [OBOL:automatic] +xref: EMAPA:17805 +xref: MA:0001131 +xref: VHOG:0000234 +is_a: UBERON:0002362 ! arachnoid mater +is_a: UBERON:0003292 ! meninx of spinal cord +intersection_of: UBERON:0002362 ! arachnoid mater +intersection_of: part_of UBERON:0002240 ! spinal cord + +[Term] +id: UBERON:0003561 +name: forebrain dura mater +def: "A dura mater that is part of a forebrain." [OBOL:automatic] +synonym: "dura mater of forebrain" EXACT [OBOL:automatic] +synonym: "dura mater of neuraxis of forebrain" EXACT [OBOL:automatic] +synonym: "forebrain dura mater of neuraxis" EXACT [OBOL:automatic] +xref: EMAPA:17766 +xref: EMAPA:37545 {source="MA:th"} +xref: MA:0000885 +is_a: UBERON:0002092 ! brain dura mater +is_a: UBERON:0003548 ! forebrain meninges +intersection_of: UBERON:0002363 ! dura mater +intersection_of: part_of UBERON:0001890 ! forebrain + +[Term] +id: UBERON:0003562 +name: midbrain dura mater +def: "A dura mater that is part of a midbrain [Automatically generated definition]." [OBOL:automatic] +synonym: "dura mater of midbrain" EXACT [OBOL:automatic] +synonym: "dura mater of neuraxis of midbrain" EXACT [OBOL:automatic] +synonym: "mesencephalon dura mater" RELATED [VHOG:0000410] +synonym: "midbrain dura mater of neuraxis" EXACT [OBOL:automatic] +xref: EMAPA:17793 +xref: MA:0001060 +xref: VHOG:0000410 +is_a: UBERON:0002092 ! brain dura mater +is_a: UBERON:0003288 ! meninx of midbrain +intersection_of: UBERON:0002363 ! dura mater +intersection_of: part_of UBERON:0001891 ! midbrain + +[Term] +id: UBERON:0003563 +name: telencephalon dura mater +def: "A dura mater that is part of a telencephalon [Automatically generated definition]." [OBOL:automatic] +synonym: "dura mater of neuraxis of telencephalon" EXACT [OBOL:automatic] +synonym: "dura mater of telencephalon" EXACT [OBOL:automatic] +synonym: "telencephalon dura mater of neuraxis" EXACT [OBOL:automatic] +xref: EMAPA:17776 +xref: MA:0000981 +is_a: UBERON:0003289 ! meninx of telencephalon +is_a: UBERON:0003561 ! forebrain dura mater +intersection_of: UBERON:0002363 ! dura mater +intersection_of: part_of UBERON:0001893 ! telencephalon + +[Term] +id: UBERON:0003564 +name: diencephalon dura mater +def: "A dura mater that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] +synonym: "between brain dura mater" EXACT [OBOL:automatic] +synonym: "between brain dura mater of neuraxis" EXACT [OBOL:automatic] +synonym: "diencephalon dura mater of neuraxis" EXACT [OBOL:automatic] +synonym: "dura mater of between brain" EXACT [OBOL:automatic] +synonym: "dura mater of diencephalon" EXACT [OBOL:automatic] +synonym: "dura mater of interbrain" EXACT [OBOL:automatic] +synonym: "dura mater of mature diencephalon" EXACT [OBOL:automatic] +synonym: "dura mater of neuraxis of between brain" EXACT [OBOL:automatic] +synonym: "dura mater of neuraxis of diencephalon" EXACT [OBOL:automatic] +synonym: "dura mater of neuraxis of interbrain" EXACT [OBOL:automatic] +synonym: "dura mater of neuraxis of mature diencephalon" EXACT [OBOL:automatic] +synonym: "interbrain dura mater" EXACT [OBOL:automatic] +synonym: "interbrain dura mater of neuraxis" EXACT [OBOL:automatic] +synonym: "mature diencephalon dura mater" EXACT [OBOL:automatic] +synonym: "mature diencephalon dura mater of neuraxis" EXACT [OBOL:automatic] +xref: EMAPA:17766 +xref: MA:0000828 +xref: VHOG:0000258 +is_a: UBERON:0003290 ! meninx of diencephalon +is_a: UBERON:0003561 ! forebrain dura mater +intersection_of: UBERON:0002363 ! dura mater +intersection_of: part_of UBERON:0001894 ! diencephalon + +[Term] +id: UBERON:0003565 +name: hindbrain dura mater +def: "A dura mater that is part of a hindbrain [Automatically generated definition]." [OBOL:automatic] +synonym: "dura mater of hindbrain" EXACT [OBOL:automatic] +synonym: "dura mater of neuraxis of hindbrain" EXACT [OBOL:automatic] +synonym: "hindbrain dura mater of neuraxis" EXACT [OBOL:automatic] +synonym: "rhombencephalon dura mater" RELATED [VHOG:0000409] +xref: EMAPA:17785 +xref: MA:0000989 +xref: VHOG:0000409 +is_a: UBERON:0002092 ! brain dura mater +is_a: UBERON:0003291 ! meninx of hindbrain +intersection_of: UBERON:0002363 ! dura mater +intersection_of: part_of UBERON:0002028 ! hindbrain + +[Term] +id: UBERON:0003566 +name: head connective tissue +def: "A portion of connective tissue that is part of a head [Automatically generated definition]." [OBOL:automatic] +synonym: "adult head connective tissue" EXACT [OBOL:automatic] +synonym: "adult head portion of connective tissue" EXACT [OBOL:automatic] +synonym: "adult head textus connectivus" EXACT [OBOL:automatic] +synonym: "connective tissue of adult head" EXACT [OBOL:automatic] +synonym: "connective tissue of head" EXACT [OBOL:automatic] +synonym: "head portion of connective tissue" EXACT [OBOL:automatic] +synonym: "head textus connectivus" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of adult head" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of head" EXACT [OBOL:automatic] +synonym: "textus connectivus of adult head" EXACT [OBOL:automatic] +synonym: "textus connectivus of head" EXACT [OBOL:automatic] +xref: EMAPA:16098 +xref: MA:0000577 +is_a: UBERON:0002384 ! connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0000033 ! head +relationship: develops_from UBERON:0005253 ! head mesenchyme +relationship: part_of UBERON:0000033 ! head +relationship: transformation_of UBERON:0005253 ! head mesenchyme + +[Term] +id: UBERON:0003567 +name: abdomen connective tissue +def: "A portion of connective tissue that is part of an abdomen [Automatically generated definition]." [OBOL:automatic] +synonym: "abdomen portion of connective tissue" EXACT [OBOL:automatic] +synonym: "abdomen textus connectivus" EXACT [OBOL:automatic] +synonym: "connective tissue of abdomen" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of abdomen" EXACT [OBOL:automatic] +synonym: "textus connectivus of abdomen" EXACT [OBOL:automatic] +xref: MA:0000519 +is_a: UBERON:0003838 ! abdominal segment connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0000916 ! abdomen +relationship: part_of UBERON:0000916 ! abdomen + +[Term] +id: UBERON:0003568 +name: neck connective tissue +def: "A portion of connective tissue that is part of a neck [Automatically generated definition]." [OBOL:automatic] +synonym: "connective tissue of neck" EXACT [OBOL:automatic] +synonym: "connective tissue of neck (volume)" EXACT [OBOL:automatic] +synonym: "neck (volume) connective tissue" EXACT [OBOL:automatic] +synonym: "neck (volume) portion of connective tissue" EXACT [OBOL:automatic] +synonym: "neck (volume) textus connectivus" EXACT [OBOL:automatic] +synonym: "neck portion of connective tissue" EXACT [OBOL:automatic] +synonym: "neck textus connectivus" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of neck" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of neck (volume)" EXACT [OBOL:automatic] +synonym: "textus connectivus of neck" EXACT [OBOL:automatic] +synonym: "textus connectivus of neck (volume)" EXACT [OBOL:automatic] +xref: EMAPA:37250 {source="MA:th"} +xref: MA:0000585 +is_a: UBERON:0002384 ! connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0000974 ! neck +relationship: part_of UBERON:0000974 ! neck + +[Term] +id: UBERON:0003569 +name: leg connective tissue +def: "A portion of connective tissue that is part of a leg [Automatically generated definition]." [OBOL:automatic] +synonym: "connective tissue of leg" EXACT [OBOL:automatic] +synonym: "leg portion of connective tissue" EXACT [OBOL:automatic] +synonym: "leg textus connectivus" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of leg" EXACT [OBOL:automatic] +synonym: "textus connectivus of leg" EXACT [OBOL:automatic] +xref: EMAPA:37324 {source="MA:th"} +xref: MA:0000671 +is_a: UBERON:0003589 ! hindlimb connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0000978 ! leg +relationship: part_of UBERON:0000978 ! leg + +[Term] +id: UBERON:0003570 +name: respiratory system connective tissue +def: "A portion of connective tissue that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +synonym: "apparatus respiratorius connective tissue" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius portion of connective tissue" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius textus connectivus" EXACT [OBOL:automatic] +synonym: "connective tissue of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "connective tissue of respiratory system" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of respiratory system" EXACT [OBOL:automatic] +synonym: "respiratory system portion of connective tissue" EXACT [OBOL:automatic] +synonym: "respiratory system textus connectivus" EXACT [OBOL:automatic] +synonym: "textus connectivus of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "textus connectivus of respiratory system" EXACT [OBOL:automatic] +xref: EMAPA:35968 +xref: EMAPA:35977 +xref: MA:0001814 +is_a: UBERON:0002384 ! connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0003571 +name: trachea connective tissue +def: "A portion of connective tissue that is part of a trachea." [OBOL:automatic] +synonym: "connective tissue of trachea" EXACT [OBOL:automatic] +synonym: "connective tissue of windpipe" EXACT [OBOL:automatic] +xref: EMAPA:35876 +xref: MA:0001853 +is_a: UBERON:0003580 ! lower respiratory tract connective tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0003126 ! trachea +relationship: develops_from UBERON:0009505 ! mesenchyme of trachea +relationship: part_of UBERON:0003126 ! trachea +relationship: transformation_of UBERON:0009505 ! mesenchyme of trachea + +[Term] +id: UBERON:0003572 +name: chest connective tissue +def: "A portion of connective tissue that is part of a chest [Automatically generated definition]." [OBOL:automatic] +synonym: "anterior thoracic region connective tissue" EXACT [OBOL:automatic] +synonym: "anterior thoracic region portion of connective tissue" EXACT [OBOL:automatic] +synonym: "anterior thoracic region textus connectivus" EXACT [OBOL:automatic] +synonym: "anterolateral part of thorax connective tissue" EXACT [OBOL:automatic] +synonym: "anterolateral part of thorax portion of connective tissue" EXACT [OBOL:automatic] +synonym: "anterolateral part of thorax textus connectivus" EXACT [OBOL:automatic] +synonym: "chest portion of connective tissue" EXACT [OBOL:automatic] +synonym: "chest textus connectivus" EXACT [OBOL:automatic] +synonym: "connective tissue of anterior thoracic region" EXACT [OBOL:automatic] +synonym: "connective tissue of anterolateral part of thorax" EXACT [OBOL:automatic] +synonym: "connective tissue of chest" EXACT [OBOL:automatic] +synonym: "connective tissue of front of thorax" EXACT [OBOL:automatic] +synonym: "front of thorax connective tissue" EXACT [OBOL:automatic] +synonym: "front of thorax portion of connective tissue" EXACT [OBOL:automatic] +synonym: "front of thorax textus connectivus" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of anterior thoracic region" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of anterolateral part of thorax" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of chest" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of front of thorax" EXACT [OBOL:automatic] +synonym: "textus connectivus of anterior thoracic region" EXACT [OBOL:automatic] +synonym: "textus connectivus of anterolateral part of thorax" EXACT [OBOL:automatic] +synonym: "textus connectivus of chest" EXACT [OBOL:automatic] +synonym: "textus connectivus of front of thorax" EXACT [OBOL:automatic] +xref: EMAPA:37254 {source="MA:th"} +xref: MA:0000550 +is_a: UBERON:0003837 ! thoracic segment connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0001443 ! chest +relationship: part_of UBERON:0001443 ! chest + +[Term] +id: UBERON:0003573 +name: arm connective tissue +def: "A portion of connective tissue that is part of an arm [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:37316 {source="MA:th"} +xref: MA:0000593 +is_a: UBERON:0003588 ! forelimb connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0001460 ! arm +relationship: part_of UBERON:0001460 ! arm + +[Term] +id: UBERON:0003574 +name: elbow connective tissue +def: "A portion of connective tissue that is part of a elbow [Automatically generated definition]." [OBOL:automatic] +synonym: "connective tissue of cubital region" EXACT [OBOL:automatic] +synonym: "connective tissue of elbow" EXACT [OBOL:automatic] +synonym: "textus connectivus of cubital region" EXACT [OBOL:automatic] +xref: EMAPA:37318 {source="MA:th"} +xref: MA:0000609 +is_a: UBERON:0003573 ! arm connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0001461 ! elbow +relationship: develops_from UBERON:0003318 ! mesenchyme of elbow +relationship: part_of UBERON:0001461 ! elbow +relationship: transformation_of UBERON:0003318 ! mesenchyme of elbow + +[Term] +id: UBERON:0003575 +name: wrist connective tissue +def: "A portion of connective tissue that is part of a wrist [Automatically generated definition]." [OBOL:automatic] +synonym: "carpal region connective tissue" EXACT [OBOL:automatic] +synonym: "connective tissue of carpal region" EXACT [OBOL:automatic] +synonym: "connective tissue of wrist" EXACT [OBOL:automatic] +xref: EMAPA:37320 {source="MA:th"} +xref: MA:0000636 +is_a: UBERON:0003598 ! manus connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0004452 ! carpal region +relationship: develops_from UBERON:0003319 ! mesenchyme of carpal region +relationship: part_of UBERON:0004452 ! carpal region +relationship: transformation_of UBERON:0003319 ! mesenchyme of carpal region + +[Term] +id: UBERON:0003576 +name: hip connective tissue +def: "A portion of connective tissue that is part of a hip [Automatically generated definition]." [OBOL:automatic] +synonym: "connective tissue of hip" EXACT [OBOL:automatic] +synonym: "connective tissue of hip region" EXACT [OBOL:automatic] +synonym: "connective tissue of regio coxae" EXACT [OBOL:automatic] +xref: EMAPA:37323 {source="MA:th"} +xref: MA:0000656 +is_a: UBERON:0002384 ! connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0001464 ! hip +relationship: develops_from UBERON:0003320 ! mesenchyme of hip +relationship: part_of UBERON:0001464 ! hip +relationship: transformation_of UBERON:0003320 ! mesenchyme of hip + +[Term] +id: UBERON:0003577 +name: knee connective tissue +def: "A portion of connective tissue that is part of a knee [Automatically generated definition]." [OBOL:automatic] +synonym: "connective tissue of knee" EXACT [OBOL:automatic] +synonym: "knee portion of connective tissue" EXACT [OBOL:automatic] +xref: EMAPA:37326 {source="MA:th"} +xref: MA:0000667 +is_a: UBERON:0003569 ! leg connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0001465 ! knee +relationship: develops_from UBERON:0003321 ! mesenchyme of knee +relationship: part_of UBERON:0001465 ! knee +relationship: transformation_of UBERON:0003321 ! mesenchyme of knee + +[Term] +id: UBERON:0003578 +name: pedal digit connective tissue +def: "A portion of connective tissue that is part of a toe [Automatically generated definition]." [OBOL:automatic] +synonym: "connective tissue of digit of foot" EXACT [OBOL:automatic] +synonym: "connective tissue of digitus pedis" EXACT [OBOL:automatic] +synonym: "connective tissue of foot digit" EXACT [OBOL:automatic] +synonym: "connective tissue of toe" EXACT [OBOL:automatic] +synonym: "digitus pedis textus connectivus" EXACT [OBOL:automatic] +synonym: "foot digit connective tissue" EXACT [MA:0000647] +synonym: "foot digit connective tissue" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit connective tissue" EXACT [OBOL:accepted] +xref: EMAPA:37330 {source="MA:th"} +xref: MA:0000647 +is_a: UBERON:0003595 ! pes connective tissue +is_a: UBERON:0015791 ! digit connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0001466 ! pedal digit +relationship: develops_from UBERON:0005255 ! pedal digit mesenchyme +relationship: part_of UBERON:0001466 ! pedal digit +relationship: transformation_of UBERON:0005255 ! pedal digit mesenchyme + +[Term] +id: UBERON:0003579 +name: shoulder connective tissue +def: "A portion of connective tissue that is part of a shoulder [Automatically generated definition]." [OBOL:automatic] +synonym: "connective tissue of shoulder" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of shoulder" EXACT [OBOL:automatic] +synonym: "shoulder portion of connective tissue" EXACT [OBOL:automatic] +synonym: "shoulder textus connectivus" EXACT [OBOL:automatic] +synonym: "textus connectivus of shoulder" EXACT [OBOL:automatic] +xref: EMAPA:37315 {source="MA:th"} +xref: MA:0000632 +is_a: UBERON:0002384 ! connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0001467 ! shoulder +relationship: develops_from UBERON:0003322 ! mesenchyme of shoulder +relationship: part_of UBERON:0001467 ! shoulder +relationship: transformation_of UBERON:0003322 ! mesenchyme of shoulder + +[Term] +id: UBERON:0003580 +name: lower respiratory tract connective tissue +def: "A portion of connective tissue that is part of a lower respiratory tract [Automatically generated definition]." [OBOL:automatic] +synonym: "connective tissue of lower respiratory tract" EXACT [OBOL:automatic] +synonym: "lower respiratory tract portion of connective tissue" EXACT [OBOL:automatic] +synonym: "lower respiratory tract textus connectivus" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of lower respiratory tract" EXACT [OBOL:automatic] +synonym: "textus connectivus of lower respiratory tract" EXACT [OBOL:automatic] +xref: EMAPA:37548 {source="MA:th"} +xref: MA:0002409 +is_a: UBERON:0003570 ! respiratory system connective tissue +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0001558 ! lower respiratory tract +relationship: part_of UBERON:0001558 ! lower respiratory tract + +[Term] +id: UBERON:0003581 +name: eyelid connective tissue +def: "A portion of connective tissue that is part of a eyelid [Automatically generated definition]." [OBOL:automatic] +synonym: "blepharon connective tissue" EXACT [OBOL:automatic] +synonym: "connective tissue of blepharon" EXACT [OBOL:automatic] +synonym: "connective tissue of eyelid" EXACT [OBOL:automatic] +xref: EMAPA:37532 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1707989 +xref: MA:0001251 +xref: NCIT:C49482 +xref: UMLS:C1707989 {source="ncithesaurus:Eyelid_Connective_Tissue"} +is_a: UBERON:0003566 ! head connective tissue +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0001711 ! eyelid +relationship: develops_from UBERON:0010330 ! eyelid mesenchyme +relationship: part_of UBERON:0001711 ! eyelid +relationship: transformation_of UBERON:0010330 ! eyelid mesenchyme + +[Term] +id: UBERON:0003582 +name: nasopharynx connective tissue +def: "A portion of connective tissue that is part of a nasopharynx [Automatically generated definition]." [OBOL:automatic] +synonym: "connective tissue of nasal part of pharynx" EXACT [OBOL:automatic] +synonym: "connective tissue of nasopharynx" EXACT [OBOL:automatic] +synonym: "connective tissue of rhinopharynx" EXACT [OBOL:automatic] +synonym: "nasal part of pharynx connective tissue" EXACT [OBOL:automatic] +synonym: "nasal part of pharynx portion of connective tissue" EXACT [OBOL:automatic] +synonym: "nasal part of pharynx textus connectivus" EXACT [OBOL:automatic] +synonym: "nasopharynx portion of connective tissue" EXACT [OBOL:automatic] +synonym: "nasopharynx textus connectivus" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of nasal part of pharynx" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of nasopharynx" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of rhinopharynx" EXACT [OBOL:automatic] +synonym: "rhinopharynx connective tissue" EXACT [OBOL:automatic] +synonym: "rhinopharynx portion of connective tissue" EXACT [OBOL:automatic] +synonym: "rhinopharynx textus connectivus" EXACT [OBOL:automatic] +synonym: "textus connectivus of nasal part of pharynx" EXACT [OBOL:automatic] +synonym: "textus connectivus of nasopharynx" EXACT [OBOL:automatic] +synonym: "textus connectivus of rhinopharynx" EXACT [OBOL:automatic] +xref: EMAPA:37682 {source="MA:th"} +xref: MA:0001864 +is_a: UBERON:0003570 ! respiratory system connective tissue +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0001728 ! nasopharynx +relationship: part_of UBERON:0001728 ! nasopharynx + +[Term] +id: UBERON:0003583 +name: larynx connective tissue +def: "A portion of connective tissue that is part of a larynx [Automatically generated definition]." [OBOL:automatic] +synonym: "connective tissue of larynx" EXACT [OBOL:automatic] +synonym: "laryngeal connective tissue" RELATED [EMAPA:35471] +synonym: "larynx portion of connective tissue" EXACT [OBOL:automatic] +synonym: "larynx textus connectivus" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of larynx" EXACT [OBOL:automatic] +synonym: "textus connectivus of larynx" EXACT [OBOL:automatic] +xref: EMAPA:35471 +xref: http://linkedlifedata.com/resource/umls/id/C1708651 +xref: MA:0001754 +xref: NCIT:C49245 +xref: UMLS:C1708651 {source="ncithesaurus:Laryngeal_Connective_Tissue"} +is_a: UBERON:0003570 ! respiratory system connective tissue +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0001737 ! larynx +relationship: part_of UBERON:0001737 ! larynx + +[Term] +id: UBERON:0003584 +name: mammary gland connective tissue +def: "The fibrous supportive tissue of the mammary gland." [https://github.com/obophenotype/uberon/issues/1151, MP:0009507] +subset: pheno_slim +synonym: "connective tissue of lactiferous gland" EXACT [OBOL:automatic] +synonym: "connective tissue of lobe of breast" EXACT [OBOL:automatic] +synonym: "connective tissue of lobe of mammary gland" EXACT [OBOL:automatic] +synonym: "connective tissue of mammary gland" EXACT [OBOL:automatic] +synonym: "lactiferous gland connective tissue" EXACT [OBOL:automatic] +synonym: "lactiferous gland portion of connective tissue" EXACT [OBOL:automatic] +synonym: "lactiferous gland stroma" EXACT [https://github.com/obophenotype/uberon/issues/1151] +synonym: "mammary gland stroma" EXACT [https://github.com/obophenotype/uberon/issues/1151] +synonym: "mammary stroma" EXACT [https://github.com/obophenotype/uberon/issues/1151] +synonym: "stroma of lactiferous gland" EXACT [FMA:74483] +xref: EMAPA:35537 +xref: FMA:74479 +xref: FMA:74483 +xref: MA:0002897 +is_a: UBERON:0002384 ! connective tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0001911 ! mammary gland +relationship: contributes_to_morphology_of UBERON:0001911 ! mammary gland +relationship: develops_from UBERON:0003326 ! mesenchyme of mammary gland +relationship: part_of UBERON:0001911 ! mammary gland +relationship: transformation_of UBERON:0003326 ! mesenchyme of mammary gland + +[Term] +id: UBERON:0003585 +name: dermis connective tissue +def: "A portion of connective tissue that is part of a dermis [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "connective tissue of dermis" EXACT [OBOL:automatic] +synonym: "dermis portion of connective tissue" EXACT [OBOL:automatic] +synonym: "dermis textus connectivus" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of dermis" EXACT [OBOL:automatic] +synonym: "textus connectivus of dermis" EXACT [OBOL:automatic] +xref: EMAPA:36509 +xref: MA:0000799 +is_a: UBERON:0002384 ! connective tissue +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0002067 ! dermis +relationship: develops_from UBERON:0004016 ! dermatome +relationship: part_of UBERON:0002067 ! dermis + +[Term] +id: UBERON:0003586 +name: trunk connective tissue +def: "A portion of connective tissue that is part of a trunk [Automatically generated definition]." [OBOL:automatic] +synonym: "connective tissue of torso" EXACT [OBOL:automatic] +synonym: "connective tissue of trunk" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of torso" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of trunk" EXACT [OBOL:automatic] +synonym: "textus connectivus of torso" EXACT [OBOL:automatic] +synonym: "textus connectivus of trunk" EXACT [OBOL:automatic] +synonym: "torso connective tissue" EXACT [OBOL:automatic] +synonym: "torso portion of connective tissue" EXACT [OBOL:automatic] +synonym: "torso textus connectivus" EXACT [OBOL:automatic] +synonym: "trunk portion of connective tissue" EXACT [OBOL:automatic] +synonym: "trunk textus connectivus" EXACT [OBOL:automatic] +xref: EMAPA:37252 {source="MA:th"} +xref: MA:0000513 +is_a: UBERON:0002384 ! connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0002100 ! trunk +relationship: part_of UBERON:0002100 ! trunk + +[Term] +id: UBERON:0003587 +name: limb connective tissue +def: "A portion of connective tissue that is part of a limb [Automatically generated definition]." [OBOL:automatic] +synonym: "connective tissue of limb" EXACT [OBOL:automatic] +synonym: "limb portion of connective tissue" EXACT [OBOL:automatic] +synonym: "limb textus connectivus" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of limb" EXACT [OBOL:automatic] +synonym: "textus connectivus of limb" EXACT [OBOL:automatic] +xref: EMAPA:37313 {source="MA:th"} +xref: MA:0000689 +is_a: UBERON:0002384 ! connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0002101 ! limb +relationship: develops_from UBERON:0009749 ! limb mesenchyme +relationship: part_of UBERON:0002101 ! limb +relationship: transformation_of UBERON:0009749 ! limb mesenchyme + +[Term] +id: UBERON:0003588 +name: forelimb connective tissue +def: "A portion of connective tissue that is part of a forelimb [Automatically generated definition]." [OBOL:automatic] +synonym: "connective tissue of anteriormost limb" EXACT [OBOL:automatic] +synonym: "connective tissue of fore limb" EXACT [OBOL:automatic] +synonym: "connective tissue of forelimb" EXACT [OBOL:automatic] +synonym: "connective tissue of superior member" EXACT [OBOL:automatic] +synonym: "connective tissue of upper extremity" EXACT [OBOL:automatic] +synonym: "wing connective tissue" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +xref: EMAPA:37314 {source="MA:th"} +xref: MA:0000613 +is_a: UBERON:0003587 ! limb connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0002102 ! forelimb +relationship: develops_from UBERON:0003859 ! forelimb mesenchyme +relationship: part_of UBERON:0002102 ! forelimb +relationship: transformation_of UBERON:0003859 ! forelimb mesenchyme + +[Term] +id: UBERON:0003589 +name: hindlimb connective tissue +def: "A portion of connective tissue that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] +synonym: "connective tissue of hind limb" EXACT [OBOL:automatic] +synonym: "connective tissue of hindlimb" EXACT [OBOL:automatic] +synonym: "connective tissue of inferior member" EXACT [OBOL:automatic] +synonym: "connective tissue of lower extremity" EXACT [OBOL:automatic] +synonym: "hind limb connective tissue" EXACT [OBOL:automatic] +xref: EMAPA:37322 {source="MA:th"} +xref: MA:0000661 +is_a: UBERON:0003587 ! limb connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0002103 ! hindlimb +relationship: develops_from UBERON:0003860 ! hindlimb mesenchyme +relationship: part_of UBERON:0002103 ! hindlimb +relationship: transformation_of UBERON:0003860 ! hindlimb mesenchyme + +[Term] +id: UBERON:0003590 +name: main bronchus connective tissue +def: "A portion of connective tissue that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchus principalis connective tissue" EXACT [OBOL:automatic] +synonym: "bronchus principalis portion of connective tissue" EXACT [OBOL:automatic] +synonym: "bronchus principalis textus connectivus" EXACT [OBOL:automatic] +synonym: "connective tissue of bronchus principalis" EXACT [OBOL:automatic] +synonym: "connective tissue of main bronchus" EXACT [OBOL:automatic] +synonym: "connective tissue of primary bronchus" EXACT [OBOL:automatic] +synonym: "connective tissue of principal bronchus" EXACT [OBOL:automatic] +synonym: "primary bronchus mesenchyme" RELATED [EMAPA:16850] +synonym: "principal bronchus mesenchyme" RELATED [EMAPA:16850] +xref: EMAPA:37550 {source="MA:th"} +xref: MA:0001845 +is_a: UBERON:0003592 ! bronchus connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0002182 ! main bronchus +relationship: develops_from UBERON:0009504 ! mesenchyme of main bronchus +relationship: part_of UBERON:0002182 ! main bronchus +relationship: transformation_of UBERON:0009504 ! mesenchyme of main bronchus + +[Term] +id: UBERON:0003591 +name: lobar bronchus connective tissue +def: "A portion of connective tissue that is part of a lobar bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "connective tissue of lobar bronchus" EXACT [OBOL:automatic] +synonym: "connective tissue of secondary bronchus" EXACT [OBOL:automatic] +xref: EMAPA:37647 {source="MA:th"} +xref: MA:0001841 +is_a: UBERON:0000114 ! lung connective tissue +is_a: UBERON:0003592 ! bronchus connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0002183 ! lobar bronchus +relationship: develops_from UBERON:0004884 ! lobar bronchus mesenchyme +relationship: part_of UBERON:0002183 ! lobar bronchus +relationship: transformation_of UBERON:0004884 ! lobar bronchus mesenchyme + +[Term] +id: UBERON:0003592 +name: bronchus connective tissue +def: "A portion of connective tissue that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchi connective tissue" EXACT [OBOL:automatic] +synonym: "bronchi portion of connective tissue" EXACT [OBOL:automatic] +synonym: "bronchi textus connectivus" EXACT [OBOL:automatic] +synonym: "bronchial connective tissue" RELATED [EMAPA:35193] +synonym: "bronchial mesenchyme" RELATED [EMAPA:32690] +synonym: "bronchial trunk connective tissue" EXACT [OBOL:automatic] +synonym: "bronchial trunk portion of connective tissue" EXACT [OBOL:automatic] +synonym: "bronchial trunk textus connectivus" EXACT [OBOL:automatic] +synonym: "bronchus portion of connective tissue" EXACT [OBOL:automatic] +synonym: "bronchus textus connectivus" EXACT [OBOL:automatic] +synonym: "connective tissue of bronchi" EXACT [OBOL:automatic] +synonym: "connective tissue of bronchial trunk" EXACT [OBOL:automatic] +synonym: "connective tissue of bronchus" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of bronchi" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of bronchial trunk" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of bronchus" EXACT [OBOL:automatic] +synonym: "textus connectivus of bronchi" EXACT [OBOL:automatic] +synonym: "textus connectivus of bronchial trunk" EXACT [OBOL:automatic] +synonym: "textus connectivus of bronchus" EXACT [OBOL:automatic] +xref: EMAPA:32690 +xref: EMAPA:35193 +xref: http://linkedlifedata.com/resource/umls/id/C1707052 +xref: MA:0001831 +xref: NCIT:C49210 +xref: UMLS:C1707052 {source="ncithesaurus:Bronchus_Connective_Tissue"} +is_a: UBERON:0003580 ! lower respiratory tract connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0002185 ! bronchus +relationship: part_of UBERON:0002185 ! bronchus + +[Term] +id: UBERON:0003593 +name: thoracic cavity connective tissue +def: "A portion of connective tissue that is part of a thoracic cavity [Automatically generated definition]." [OBOL:automatic] +synonym: "cavity of chest connective tissue" EXACT [OBOL:automatic] +synonym: "cavity of chest portion of connective tissue" EXACT [OBOL:automatic] +synonym: "cavity of chest textus connectivus" EXACT [OBOL:automatic] +synonym: "cavity of thorax connective tissue" EXACT [OBOL:automatic] +synonym: "cavity of thorax portion of connective tissue" EXACT [OBOL:automatic] +synonym: "cavity of thorax textus connectivus" EXACT [OBOL:automatic] +synonym: "chest cavity connective tissue" EXACT [OBOL:automatic] +synonym: "chest cavity portion of connective tissue" EXACT [OBOL:automatic] +synonym: "chest cavity textus connectivus" EXACT [OBOL:automatic] +synonym: "connective tissue of cavity of chest" EXACT [OBOL:automatic] +synonym: "connective tissue of cavity of thorax" EXACT [OBOL:automatic] +synonym: "connective tissue of chest cavity" EXACT [OBOL:automatic] +synonym: "connective tissue of pectoral cavity" EXACT [OBOL:automatic] +synonym: "connective tissue of thoracic cavity" EXACT [OBOL:automatic] +synonym: "pectoral cavity connective tissue" EXACT [OBOL:automatic] +synonym: "pectoral cavity portion of connective tissue" EXACT [OBOL:automatic] +synonym: "pectoral cavity textus connectivus" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of cavity of chest" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of cavity of thorax" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of chest cavity" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of pectoral cavity" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of thoracic cavity" EXACT [OBOL:automatic] +synonym: "textus connectivus of cavity of chest" EXACT [OBOL:automatic] +synonym: "textus connectivus of cavity of thorax" EXACT [OBOL:automatic] +synonym: "textus connectivus of chest cavity" EXACT [OBOL:automatic] +synonym: "textus connectivus of pectoral cavity" EXACT [OBOL:automatic] +synonym: "textus connectivus of thoracic cavity" EXACT [OBOL:automatic] +synonym: "thoracic cavity portion of connective tissue" EXACT [OBOL:automatic] +synonym: "thoracic cavity textus connectivus" EXACT [OBOL:automatic] +xref: EMAPA:37255 {source="MA:th"} +xref: MA:0000555 +is_a: UBERON:0002384 ! connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: located_in UBERON:0002224 ! thoracic cavity +relationship: located_in UBERON:0002224 ! thoracic cavity + +[Term] +id: UBERON:0003594 +name: pelvis connective tissue +def: "A portion of connective tissue that is part of a pelvis [Automatically generated definition]." [OBOL:automatic] +synonym: "connective tissue of pelvis" EXACT [OBOL:automatic] +synonym: "pelvis portion of connective tissue" EXACT [OBOL:automatic] +synonym: "pelvis textus connectivus" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of pelvis" EXACT [OBOL:automatic] +synonym: "textus connectivus of pelvis" EXACT [OBOL:automatic] +xref: EMAPA:37257 {source="MA:th"} +xref: MA:0000533 +is_a: UBERON:0003838 ! abdominal segment connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0002355 ! pelvic region of trunk +relationship: part_of UBERON:0002355 ! pelvic region of trunk + +[Term] +id: UBERON:0003595 +name: pes connective tissue +def: "A portion of connective tissue that is part of a foot [Automatically generated definition]." [OBOL:automatic] +synonym: "connective tissue of foot" EXACT [OBOL:automatic] +synonym: "connective tissue of terminal segment of free lower limb" EXACT [OBOL:automatic] +synonym: "foot connective tissue" EXACT [MA:0000644] +synonym: "textus connectivus of pes" EXACT LATIN [OBOL:automatic] +xref: EMAPA:37329 {source="MA:th"} +xref: MA:0000644 +is_a: UBERON:0003589 ! hindlimb connective tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0002387 ! pes +relationship: develops_from UBERON:0003328 ! mesenchyme of footplate +relationship: part_of UBERON:0002387 ! pes +relationship: transformation_of UBERON:0003328 ! mesenchyme of footplate + +[Term] +id: UBERON:0003596 +name: ankle connective tissue +def: "A portion of connective tissue that is part of an ankle [Automatically generated definition]." [OBOL:automatic] +synonym: "connective tissue of ankle" EXACT [OBOL:automatic] +synonym: "tarsal region connective tissue" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: EMAPA:37328 {source="MA:th"} +xref: MA:0000639 +is_a: UBERON:0003595 ! pes connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0004454 ! tarsal region +relationship: develops_from UBERON:0010695 ! mesenchyme of tarsal region +relationship: part_of UBERON:0004454 ! tarsal region +relationship: transformation_of UBERON:0010695 ! mesenchyme of tarsal region + +[Term] +id: UBERON:0003597 +name: manual digit connective tissue +def: "A portion of connective tissue that is part of a finger [Automatically generated definition]." [OBOL:automatic] +synonym: "connective tissue of digit of hand" EXACT [OBOL:automatic] +synonym: "connective tissue of digitus manus" EXACT [OBOL:automatic] +synonym: "connective tissue of finger" EXACT [OBOL:automatic] +synonym: "connective tissue of hand digit" EXACT [OBOL:automatic] +synonym: "fore limb digit connective tissue" EXACT [OBOL:accepted] +synonym: "hand digit connective tissue" EXACT [MA:0000623] +synonym: "hand digit connective tissue" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +xref: EMAPA:37321 {source="MA:th"} +xref: MA:0000623 +is_a: UBERON:0003598 ! manus connective tissue +is_a: UBERON:0015791 ! digit connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0002389 ! manual digit +relationship: develops_from UBERON:0005257 ! manual digit mesenchyme +relationship: part_of UBERON:0002389 ! manual digit +relationship: transformation_of UBERON:0005257 ! manual digit mesenchyme + +[Term] +id: UBERON:0003598 +name: manus connective tissue +def: "A portion of connective tissue that is part of a hand [Automatically generated definition]." [OBOL:automatic] +synonym: "connective tissue of hand" EXACT [OBOL:automatic] +synonym: "connective tissue of terminal segment of free upper limb" EXACT [OBOL:automatic] +synonym: "hand connective tissue" EXACT [MA:0000620] +xref: EMAPA:35392 +xref: MA:0000620 +is_a: UBERON:0003588 ! forelimb connective tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0002398 ! manus +relationship: develops_from UBERON:0009523 ! mesenchyme of handplate +relationship: part_of UBERON:0002398 ! manus +relationship: transformation_of UBERON:0009523 ! mesenchyme of handplate + +[Term] +id: UBERON:0003599 +name: tail connective tissue +def: "A portion of connective tissue that is part of a tail [Automatically generated definition]." [OBOL:automatic] +synonym: "connective tissue of post-vent region" EXACT [OBOL:automatic] +synonym: "connective tissue of tail" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of post-vent region" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of tail" EXACT [OBOL:automatic] +synonym: "post-vent region connective tissue" EXACT [OBOL:automatic] +synonym: "post-vent region portion of connective tissue" EXACT [OBOL:automatic] +synonym: "post-vent region textus connectivus" EXACT [OBOL:automatic] +synonym: "tail portion of connective tissue" EXACT [OBOL:automatic] +synonym: "tail textus connectivus" EXACT [OBOL:automatic] +synonym: "textus connectivus of post-vent region" EXACT [OBOL:automatic] +synonym: "textus connectivus of tail" EXACT [OBOL:automatic] +xref: EMAPA:16749 +xref: MA:0000697 +is_a: UBERON:0002384 ! connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0007812 ! post-anal tail +relationship: part_of UBERON:0007812 ! post-anal tail + +[Term] +id: UBERON:0003601 +name: neck cartilage +def: "A cartilage that is part of a neck [Automatically generated definition]." [OBOL:automatic] +synonym: "cartilage of neck" EXACT [OBOL:automatic] +synonym: "cartilage of neck (volume)" EXACT [OBOL:automatic] +synonym: "neck (volume) cartilage" EXACT [OBOL:automatic] +xref: EMAPA:37251 {source="MA:th"} +xref: MA:0000586 +is_a: UBERON:0007844 ! cartilage element +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0000974 ! neck +relationship: part_of UBERON:0000974 ! neck + +[Term] +id: UBERON:0003603 +name: lower respiratory tract cartilage +def: "A cartilage that is part of a lower respiratory tract [Automatically generated definition]." [OBOL:automatic] +synonym: "cartilage of lower respiratory tract" EXACT [OBOL:automatic] +xref: EMAPA:37547 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1708759 +xref: MA:0001819 +xref: NCIT:C49256 +xref: UMLS:C1708759 {source="ncithesaurus:Lower_Respiratory_Tract_Cartilage"} +is_a: UBERON:0003406 ! cartilage of respiratory system +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0001558 ! lower respiratory tract +relationship: part_of UBERON:0001558 ! lower respiratory tract + +[Term] +id: UBERON:0003604 +name: trachea cartilage +def: "the ring-shaped cartilaginous structures that support the trachea" [http://orcid.org/0000-0002-6601-2165, J:97123, MGI:smb, MP:0003120] +subset: pheno_slim +synonym: "cartilage of the trachea" RELATED [http://en.wikipedia.org/wiki/Tracheal_rings] +synonym: "cartilage of trachea" EXACT [OBOL:automatic] +synonym: "cartilage of windpipe" EXACT [OBOL:automatic] +synonym: "cartilagines tracheales" RELATED LATIN [http://en.wikipedia.org/wiki/Tracheal_rings] +synonym: "cartilaginous ring of trachea" EXACT [EMAPA:18699] +synonym: "cartilaginous trachea cartilage" EXACT [OBOL:automatic] +synonym: "cartilago trachealis" EXACT [FMA:7434] +synonym: "ring of the trachea" RELATED [http://en.wikipedia.org/wiki/Tracheal_rings] +synonym: "trachea ring" RELATED [] +synonym: "tracheal cartilage" EXACT [FMA:7434] +synonym: "tracheal ring" RELATED [http://en.wikipedia.org/wiki/Tracheal_rings] +synonym: "windpipe cartilage" EXACT [OBOL:automatic] +xref: EMAPA:18699 +xref: EMAPA:35875 +xref: FMA:7434 +xref: http://linkedlifedata.com/resource/umls/id/C1710456 +xref: http://www.snomedbrowser.com/Codes/Details/278979006 +xref: MA:0001857 +xref: NCIT:C49304 +xref: Tracheal:rings +xref: UMLS:C1710456 {source="ncithesaurus:Trachea_Cartilage"} +is_a: UBERON:0003603 ! lower respiratory tract cartilage +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0003126 ! trachea +relationship: develops_from UBERON:0007267 ! trachea pre-cartilage rings +relationship: part_of UBERON:0003126 ! trachea + +[Term] +id: UBERON:0003605 +name: eye skin gland +def: "A skin gland that is part of a camera-type eye [Automatically generated definition]." [OBOL:automatic] +subset: organ_slim +synonym: "camera-type eye skin gland" EXACT [OBOL:automatic] +synonym: "camera-type eye skin glands" EXACT [OBOL:automatic] +synonym: "camera-type eye skin glands set" EXACT [OBOL:automatic] +synonym: "skin gland of camera-type eye" EXACT [OBOL:automatic] +synonym: "skin gland of vertebrate eye" EXACT [OBOL:automatic] +synonym: "skin glands of camera-type eye" EXACT [OBOL:automatic] +synonym: "skin glands of vertebrate eye" EXACT [OBOL:automatic] +synonym: "skin glands set of camera-type eye" EXACT [OBOL:automatic] +synonym: "skin glands set of vertebrate eye" EXACT [OBOL:automatic] +synonym: "vertebrate eye skin gland" EXACT [OBOL:automatic] +synonym: "vertebrate eye skin glands" EXACT [OBOL:automatic] +synonym: "vertebrate eye skin glands set" EXACT [OBOL:automatic] +xref: EMAPA:37530 {source="MA:th"} +xref: MA:0002451 +is_a: UBERON:0002419 ! skin gland +is_a: UBERON:0004859 ! eye gland +is_a: UBERON:0015152 ! gland of ocular region +intersection_of: UBERON:0002419 ! skin gland +intersection_of: part_of UBERON:0000019 ! camera-type eye +relationship: part_of UBERON:0000019 ! camera-type eye + +[Term] +id: UBERON:0003606 +name: limb long bone +def: "A long bone that is part of a limb [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "long bone of limb" EXACT [OBOL:automatic] +xref: EMAPA:35495 +xref: MA:0000298 +is_a: UBERON:0002428 ! limb bone +is_a: UBERON:0002495 ! long bone +intersection_of: UBERON:0002495 ! long bone +intersection_of: part_of UBERON:0002101 ! limb + +[Term] +id: UBERON:0003607 +name: forelimb long bone +def: "A long bone that is part of a forelimb [Automatically generated definition]." [OBOL:automatic] +synonym: "anteriormost limb long bone" EXACT [OBOL:automatic] +synonym: "fore limb long bone" EXACT [OBOL:automatic] +synonym: "long bone of anteriormost limb" EXACT [OBOL:automatic] +synonym: "long bone of fore limb" EXACT [OBOL:automatic] +synonym: "long bone of forelimb" EXACT [OBOL:automatic] +synonym: "long bone of superior member" EXACT [OBOL:automatic] +synonym: "long bone of upper extremity" EXACT [OBOL:automatic] +synonym: "superior member long bone" EXACT [OBOL:automatic] +synonym: "upper extremity long bone" EXACT [OBOL:automatic] +synonym: "wing long bone" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +xref: EMAPA:35350 +xref: MA:0000299 +is_a: UBERON:0003606 ! limb long bone +is_a: UBERON:0008962 ! forelimb bone +intersection_of: UBERON:0002495 ! long bone +intersection_of: part_of UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0003608 +name: hindlimb long bone +def: "A long bone that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] +synonym: "hind limb long bone" EXACT [OBOL:automatic] +synonym: "inferior member long bone" EXACT [OBOL:automatic] +synonym: "long bone of hind limb" EXACT [OBOL:automatic] +synonym: "long bone of hindlimb" EXACT [OBOL:automatic] +synonym: "long bone of inferior member" EXACT [OBOL:automatic] +synonym: "long bone of lower extremity" EXACT [OBOL:automatic] +synonym: "lower extremity long bone" EXACT [OBOL:automatic] +xref: EMAPA:35403 +xref: MA:0000300 +is_a: UBERON:0003464 ! hindlimb bone +is_a: UBERON:0003606 ! limb long bone +intersection_of: UBERON:0002495 ! long bone +intersection_of: part_of UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0003609 +name: aorta elastic tissue +def: "The dense connective tissue which contains predominantly elastic fibers and is found in the tunica media of the aorta wall." [MP:0009862] +subset: pheno_slim +synonym: "adult aorta elastic connective tissue" EXACT [OBOL:automatic] +synonym: "adult aorta elastic tissue" EXACT [OBOL:automatic] +synonym: "adult aorta textus connectivus elasticus" EXACT [OBOL:automatic] +synonym: "aorta elastic connective tissue" EXACT [OBOL:automatic] +synonym: "aorta elastic lamina" EXACT [MP:0009862] +synonym: "aorta elastic laminae" EXACT PLURAL [MP:0009862] +synonym: "aorta textus connectivus elasticus" EXACT [OBOL:automatic] +synonym: "dorsal aorta elastic connective tissue" EXACT [OBOL:automatic] +synonym: "dorsal aorta elastic tissue" EXACT [OBOL:automatic] +synonym: "dorsal aorta textus connectivus elasticus" EXACT [OBOL:automatic] +synonym: "elastic connective tissue of adult aorta" EXACT [OBOL:automatic] +synonym: "elastic connective tissue of aorta" EXACT [OBOL:automatic] +synonym: "elastic connective tissue of dorsal aorta" EXACT [OBOL:automatic] +synonym: "elastic connective tissue of trunk of aortic tree" EXACT [OBOL:automatic] +synonym: "elastic tissue of adult aorta" EXACT [OBOL:automatic] +synonym: "elastic tissue of aorta" EXACT [OBOL:automatic] +synonym: "elastic tissue of dorsal aorta" EXACT [OBOL:automatic] +synonym: "elastic tissue of trunk of aortic tree" EXACT [OBOL:automatic] +synonym: "textus connectivus elasticus of adult aorta" EXACT [OBOL:automatic] +synonym: "textus connectivus elasticus of aorta" EXACT [OBOL:automatic] +synonym: "textus connectivus elasticus of dorsal aorta" EXACT [OBOL:automatic] +synonym: "textus connectivus elasticus of trunk of aortic tree" EXACT [OBOL:automatic] +synonym: "trunk of aortic tree elastic connective tissue" EXACT [OBOL:automatic] +synonym: "trunk of aortic tree elastic tissue" EXACT [OBOL:automatic] +synonym: "trunk of aortic tree textus connectivus elasticus" EXACT [OBOL:automatic] +xref: MA:0002859 +is_a: UBERON:0003614 ! blood vessel elastic tissue +intersection_of: UBERON:0002521 ! elastic tissue +intersection_of: part_of UBERON:0000947 ! aorta +relationship: part_of UBERON:0000947 ! aorta + +[Term] +id: UBERON:0003610 +name: heart elastic tissue +def: "The type of heart connective tissue found in the endocardial layer that consists mainly of elastic fibers." [MP:0009863] +subset: pheno_slim +synonym: "cardiac elastic tissue" EXACT [MP:0009863] +synonym: "elastic connective tissue of heart" EXACT [OBOL:automatic] +synonym: "elastic tissue of heart" EXACT [OBOL:automatic] +synonym: "heart elastic connective tissue" EXACT [OBOL:automatic] +synonym: "heart textus connectivus elasticus" EXACT [OBOL:automatic] +synonym: "textus connectivus elasticus of heart" EXACT [OBOL:automatic] +xref: MA:0002858 +is_a: UBERON:0003613 ! cardiovascular system elastic tissue +is_a: UBERON:0003837 ! thoracic segment connective tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0002521 ! elastic tissue +intersection_of: part_of UBERON:0000948 ! heart +relationship: part_of UBERON:0000948 ! heart + +[Term] +id: UBERON:0003611 +name: respiratory system elastic tissue +def: "An elastic tissue that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +synonym: "apparatus respiratorius elastic connective tissue" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius elastic tissue" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius textus connectivus elasticus" EXACT [OBOL:automatic] +synonym: "elastic connective tissue of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "elastic connective tissue of respiratory system" EXACT [OBOL:automatic] +synonym: "elastic tissue of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "elastic tissue of respiratory system" EXACT [OBOL:automatic] +synonym: "respiratory system elastic connective tissue" EXACT [OBOL:automatic] +synonym: "respiratory system textus connectivus elasticus" EXACT [OBOL:automatic] +synonym: "textus connectivus elasticus of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "textus connectivus elasticus of respiratory system" EXACT [OBOL:automatic] +xref: EMAPA:37579 {source="MA:th"} +xref: MA:0001820 +is_a: UBERON:0002521 ! elastic tissue +is_a: UBERON:0003570 ! respiratory system connective tissue +intersection_of: UBERON:0002521 ! elastic tissue +intersection_of: part_of UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0004777 ! respiratory system submucosa + +[Term] +id: UBERON:0003613 +name: cardiovascular system elastic tissue +def: "An elastic tissue that is part of a circulatory system [Automatically generated definition]." [OBOL:automatic] +synonym: "cardiovascular system elastic connective tissue" EXACT [OBOL:automatic] +synonym: "cardiovascular system textus connectivus elasticus" EXACT [OBOL:automatic] +synonym: "circulatory system elastic connective tissue" EXACT [OBOL:automatic] +synonym: "circulatory system elastic tissue" EXACT [OBOL:automatic] +synonym: "circulatory system textus connectivus elasticus" EXACT [OBOL:automatic] +synonym: "elastic connective tissue of cardiovascular system" EXACT [OBOL:automatic] +synonym: "elastic connective tissue of circulatory system" EXACT [OBOL:automatic] +synonym: "elastic tissue of cardiovascular system" EXACT [OBOL:automatic] +synonym: "elastic tissue of circulatory system" EXACT [OBOL:automatic] +synonym: "textus connectivus elasticus of cardiovascular system" EXACT [OBOL:automatic] +synonym: "textus connectivus elasticus of circulatory system" EXACT [OBOL:automatic] +xref: MA:0002857 +is_a: UBERON:0002521 ! elastic tissue +intersection_of: UBERON:0002521 ! elastic tissue +intersection_of: part_of UBERON:0001009 ! circulatory system +relationship: part_of UBERON:0004535 ! cardiovascular system + +[Term] +id: UBERON:0003614 +name: blood vessel elastic tissue +def: "Elastic tissue layer that lines a blood vessel layer." [http://orcid.org/0000-0002-6601-2165, https://sourceforge.net/p/obo/mammalian-phenotype-requests/2026/] +subset: pheno_slim +synonym: "blood vessel elastic connective tissue" EXACT [OBOL:automatic] +synonym: "blood vessel textus connectivus elasticus" EXACT [OBOL:automatic] +synonym: "elastic connective tissue of blood vessel" EXACT [OBOL:automatic] +synonym: "elastic lamina" BROAD [MP:0006083] +synonym: "elastic laminae" BROAD PLURAL [MP:0006083] +synonym: "elastic tissue of blood vessel" EXACT [OBOL:automatic] +synonym: "textus connectivus elasticus of blood vessel" EXACT [OBOL:automatic] +synonym: "vascular elastic lamina" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "vascular elastic laminae" EXACT PLURAL [http://orcid.org/0000-0002-6601-2165] +synonym: "vascular elastic tissue" EXACT [MP:0006083] +xref: EMAPA:36300 +xref: MA:0002856 +is_a: UBERON:0003613 ! cardiovascular system elastic tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0002521 ! elastic tissue +intersection_of: part_of UBERON:0001981 ! blood vessel +relationship: part_of UBERON:0001981 ! blood vessel + +[Term] +id: UBERON:0003615 +name: lung elastic tissue +def: "Elastic tissue that is part of a lung [Automatically generated definition]." [OBOL:automatic] +synonym: "elastic connective tissue of lung" EXACT [OBOL:automatic] +synonym: "elastic tissue of lung" EXACT [OBOL:automatic] +synonym: "lung elastic connective tissue" EXACT [OBOL:automatic] +synonym: "lung textus connectivus elasticus" EXACT [OBOL:automatic] +synonym: "pulmonary elastic fiber" NARROW [http://orcid.org/0000-0002-6601-2165] +synonym: "textus connectivus elasticus of lung" EXACT [OBOL:automatic] +xref: MA:0002860 +is_a: UBERON:0000114 ! lung connective tissue +is_a: UBERON:0003611 ! respiratory system elastic tissue +intersection_of: UBERON:0002521 ! elastic tissue +intersection_of: part_of UBERON:0002048 ! lung + +[Term] +id: UBERON:0003616 +name: bronchus elastic tissue +def: "An elastic tissue that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchi elastic connective tissue" EXACT [OBOL:automatic] +synonym: "bronchi elastic tissue" EXACT [OBOL:automatic] +synonym: "bronchi textus connectivus elasticus" EXACT [OBOL:automatic] +synonym: "bronchial trunk elastic connective tissue" EXACT [OBOL:automatic] +synonym: "bronchial trunk elastic tissue" EXACT [OBOL:automatic] +synonym: "bronchial trunk textus connectivus elasticus" EXACT [OBOL:automatic] +synonym: "bronchus elastic connective tissue" EXACT [OBOL:automatic] +synonym: "bronchus textus connectivus elasticus" EXACT [OBOL:automatic] +synonym: "elastic connective tissue of bronchi" EXACT [OBOL:automatic] +synonym: "elastic connective tissue of bronchial trunk" EXACT [OBOL:automatic] +synonym: "elastic connective tissue of bronchus" EXACT [OBOL:automatic] +synonym: "elastic tissue of bronchi" EXACT [OBOL:automatic] +synonym: "elastic tissue of bronchial trunk" EXACT [OBOL:automatic] +synonym: "elastic tissue of bronchus" EXACT [OBOL:automatic] +synonym: "textus connectivus elasticus of bronchi" EXACT [OBOL:automatic] +synonym: "textus connectivus elasticus of bronchial trunk" EXACT [OBOL:automatic] +synonym: "textus connectivus elasticus of bronchus" EXACT [OBOL:automatic] +xref: http://linkedlifedata.com/resource/umls/id/C1707053 +xref: MA:0001838 +xref: NCIT:C49211 +xref: UMLS:C1707053 {source="ncithesaurus:Bronchus_Elastic_Tissue"} +is_a: UBERON:0003592 ! bronchus connective tissue +is_a: UBERON:0003611 ! respiratory system elastic tissue +intersection_of: UBERON:0002521 ! elastic tissue +intersection_of: part_of UBERON:0002185 ! bronchus +relationship: part_of UBERON:0001957 ! submucosa of bronchus + +[Term] +id: UBERON:0003617 +name: trachea elastic tissue +def: "An elastic tissue that is part of a trachea [Automatically generated definition]." [OBOL:automatic] +synonym: "cartilaginous trachea elastic connective tissue" EXACT [OBOL:automatic] +synonym: "cartilaginous trachea elastic tissue" EXACT [OBOL:automatic] +synonym: "cartilaginous trachea textus connectivus elasticus" EXACT [OBOL:automatic] +synonym: "elastic connective tissue of cartilaginous trachea" EXACT [OBOL:automatic] +synonym: "elastic connective tissue of vertebrate trachea" EXACT [OBOL:automatic] +synonym: "elastic connective tissue of windpipe" EXACT [OBOL:automatic] +synonym: "elastic tissue of cartilaginous trachea" EXACT [OBOL:automatic] +synonym: "elastic tissue of vertebrate trachea" EXACT [OBOL:automatic] +synonym: "elastic tissue of windpipe" EXACT [OBOL:automatic] +synonym: "textus connectivus elasticus of cartilaginous trachea" EXACT [OBOL:automatic] +synonym: "textus connectivus elasticus of vertebrate trachea" EXACT [OBOL:automatic] +synonym: "textus connectivus elasticus of windpipe" EXACT [OBOL:automatic] +synonym: "vertebrate trachea elastic connective tissue" EXACT [OBOL:automatic] +synonym: "vertebrate trachea elastic tissue" EXACT [OBOL:automatic] +synonym: "vertebrate trachea textus connectivus elasticus" EXACT [OBOL:automatic] +synonym: "windpipe elastic connective tissue" EXACT [OBOL:automatic] +synonym: "windpipe elastic tissue" EXACT [OBOL:automatic] +synonym: "windpipe textus connectivus elasticus" EXACT [OBOL:automatic] +xref: MA:0001861 +is_a: UBERON:0003571 ! trachea connective tissue +is_a: UBERON:0003611 ! respiratory system elastic tissue +intersection_of: UBERON:0002521 ! elastic tissue +intersection_of: part_of UBERON:0003126 ! trachea +relationship: part_of UBERON:0002202 ! submucosa of trachea + +[Term] +id: UBERON:0003618 +name: aorta tunica media +def: "The middle layer of the aorta wall, containing the smooth muscle layer and elastic fibers." [MP:0009873] +subset: pheno_slim +synonym: "adult aorta tunica media" EXACT [OBOL:automatic] +synonym: "dorsal aorta tunica media" EXACT [OBOL:automatic] +synonym: "trunk of aortic tree tunica media" EXACT [OBOL:automatic] +synonym: "tunica media of adult aorta" EXACT [OBOL:automatic] +synonym: "tunica media of aorta" EXACT [OBOL:automatic] +synonym: "tunica media of dorsal aorta" EXACT [OBOL:automatic] +synonym: "tunica media of trunk of aortic tree" EXACT [OBOL:automatic] +xref: EMAPA:35138 +xref: FMA:74433 +xref: http://www.snomedbrowser.com/Codes/Details/48467007 +xref: MA:0002903 +is_a: UBERON:0002522 ! tunica media +intersection_of: UBERON:0002522 ! tunica media +intersection_of: part_of UBERON:0000947 ! aorta +relationship: contributes_to_morphology_of UBERON:0004663 ! aorta wall +relationship: part_of UBERON:0004663 ! aorta wall + +[Term] +id: UBERON:0003619 +name: aorta tunica intima +def: "The innermost layer of the aorta, containing the endothelium and an inner elastic membrane." [MP:0009872] +subset: pheno_slim +synonym: "adult aorta tunica intima" EXACT [OBOL:automatic] +synonym: "dorsal aorta tunica intima" EXACT [OBOL:automatic] +synonym: "trunk of aortic tree tunica intima" EXACT [OBOL:automatic] +synonym: "tunica intima of adult aorta" EXACT [OBOL:automatic] +synonym: "tunica intima of aorta" EXACT [OBOL:automatic] +synonym: "tunica intima of dorsal aorta" EXACT [OBOL:automatic] +synonym: "tunica intima of trunk of aortic tree" EXACT [OBOL:automatic] +xref: BTO:0005553 +xref: EMAPA:35137 +xref: FMA:74419 +xref: http://www.snomedbrowser.com/Codes/Details/362031007 +xref: MA:0002904 +is_a: UBERON:0002523 ! tunica intima +is_a: UBERON:0004797 ! blood vessel layer +intersection_of: UBERON:0002523 ! tunica intima +intersection_of: part_of UBERON:0000947 ! aorta +relationship: contributes_to_morphology_of UBERON:0004663 ! aorta wall +relationship: part_of UBERON:0004663 ! aorta wall + +[Term] +id: UBERON:0003620 +name: manual digit 1 phalanx +def: "A phalanx that is part of a hand digit 1 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "fore limb digit 1 phalanx" EXACT [OBOL:accepted] +synonym: "hand digit 1 phalanx" EXACT [MA:0001389] +synonym: "hand digit 1 phalanx" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit I phalanx" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "phalanx of hand digit 1" EXACT [OBOL:automatic] +synonym: "phalanx of thumb" EXACT [OBOL:automatic] +synonym: "thumb phalanx" EXACT [OBOL:automatic] +xref: EMAPA:19113 +xref: FMA:35477 +xref: http://linkedlifedata.com/resource/umls/id/C1711344 +xref: http://www.snomedbrowser.com/Codes/Details/181975002 +xref: MA:0001389 +xref: NCIT:C52777 +xref: UMLS:C1711344 {source="ncithesaurus:Hand_Digit_1_Phalanx"} +is_a: UBERON:0001436 ! phalanx of manus +is_a: UBERON:0015025 ! manual digit 1 phalanx endochondral element +intersection_of: UBERON:0003221 ! phalanx +intersection_of: part_of UBERON:0001463 ! manual digit 1 +relationship: develops_from UBERON:0010675 ! manual digit 1 phalanx cartilage element + +[Term] +id: UBERON:0003622 +name: manual digit 2 +def: "2nd digit of the manus." [http://en.wikipedia.org/wiki/Index_finger] +subset: pheno_slim +synonym: "2nd digit of hand" EXACT [] +synonym: "2nd finger" EXACT [] +synonym: "digit 2 of fore-paw" EXACT [EMAPA:17432] +synonym: "finger 2" EXACT [EHDAA2:0000517] +synonym: "fore digit II" EXACT [AAO:0010640] +synonym: "fore limb digit 2" EXACT [OBOL:accepted] +synonym: "hand digit 2" EXACT [MA:0000455] +synonym: "hand digit 2" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "index finger" NARROW [] +synonym: "manual digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "second digit of hand" EXACT [FMA:24946] +synonym: "second finger" EXACT [] +xref: AAO:0010640 +xref: EHDAA2:0000517 +xref: EMAPA:17432 +xref: FMA:24946 +xref: http://linkedlifedata.com/resource/umls/id/C0230388 +xref: http://www.snomedbrowser.com/Codes/Details/362758006 +xref: Index:finger +xref: MA:0000455 +xref: NCIT:C52835 +xref: UMLS:C0230388 {source="ncithesaurus:Hand_Digit_2"} +is_a: UBERON:0006049 ! digit 2 +is_a: UBERON:0019232 ! manual digit 2, 3 or 4 +intersection_of: UBERON:0006049 ! digit 2 +intersection_of: part_of UBERON:0002398 ! manus +relationship: ambiguous_for_taxon NCBITaxon:8782 +relationship: part_of UBERON:5003622 ! manual digit 2 plus metapodial segment + +[Term] +id: UBERON:0003623 +name: manual digit 3 +def: "3rd digit of the manus." [http://en.wikipedia.org/wiki/Middle_finger] +subset: pheno_slim +synonym: "3rd digit of hand" EXACT [] +synonym: "3rd finger" EXACT [] +synonym: "digit 3 of fore-paw" EXACT [EMAPA:17435] +synonym: "digitus medius" RELATED LATIN [http://en.wikipedia.org/wiki/Middle_finger] +synonym: "finger 3" EXACT [EHDAA2:0000523] +synonym: "fore digit III" EXACT [AAO:0010641] +synonym: "fore limb digit 3" EXACT [OBOL:accepted] +synonym: "hand digit 3" EXACT [MA:0000456] +synonym: "hand digit 3" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "long finger" RELATED [EMAPA:17435] +synonym: "manual digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "middle finger" NARROW [] +synonym: "third digit of hand" EXACT [FMA:24947] +synonym: "third finger" EXACT [] +xref: AAO:0010641 +xref: EHDAA2:0000523 +xref: EMAPA:17435 +xref: FMA:24947 +xref: http://linkedlifedata.com/resource/umls/id/C0230393 +xref: http://www.snomedbrowser.com/Codes/Details/362763005 +xref: MA:0000456 +xref: Middle:finger +xref: NCIT:C52836 +xref: UMLS:C0230393 {source="ncithesaurus:Hand_Digit_3"} +is_a: UBERON:0006050 ! digit 3 +is_a: UBERON:0019232 ! manual digit 2, 3 or 4 +intersection_of: UBERON:0006050 ! digit 3 +intersection_of: part_of UBERON:0002398 ! manus +relationship: ambiguous_for_taxon NCBITaxon:8782 +relationship: part_of UBERON:5003623 ! manual digit 3 plus metapodial segment + +[Term] +id: UBERON:0003624 +name: manual digit 4 +def: "4th digit of the manus." [http://en.wikipedia.org/wiki/Ring_finger] +subset: pheno_slim +synonym: "4th digit of hand" EXACT [] +synonym: "4th finger" EXACT [] +synonym: "digit 4 of fore-paw" EXACT [EMAPA:17438] +synonym: "digitus annularis" RELATED LATIN [http://en.wikipedia.org/wiki/Ring_finger] +synonym: "finger 4" EXACT [EHDAA2:0000529] +synonym: "fore digit IV" EXACT [AAO:0010642] +synonym: "fore limb digit 4" EXACT [OBOL:accepted] +synonym: "fourth digit of hand" EXACT [FMA:24948] +synonym: "fourth finger" EXACT [] +synonym: "hand digit 4" EXACT [MA:0000457] +synonym: "hand digit 4" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "ring finger" NARROW [] +xref: AAO:0010642 +xref: EHDAA2:0000529 +xref: EMAPA:17438 +xref: FMA:24948 +xref: http://linkedlifedata.com/resource/umls/id/C0230398 +xref: http://www.snomedbrowser.com/Codes/Details/362768001 +xref: MA:0000457 +xref: NCIT:C52837 +xref: Ring:finger +xref: UMLS:C0230398 {source="ncithesaurus:Hand_Digit_4"} +is_a: UBERON:0006051 ! digit 4 +is_a: UBERON:0019232 ! manual digit 2, 3 or 4 +intersection_of: UBERON:0006051 ! digit 4 +intersection_of: part_of UBERON:0002398 ! manus +relationship: ambiguous_for_taxon NCBITaxon:8782 +relationship: part_of UBERON:5003624 ! manual digit 4 plus metapodial segment + +[Term] +id: UBERON:0003625 +name: manual digit 5 +def: "5th digit of the manus." [http://en.wikipedia.org/wiki/Little_finger] +subset: pheno_slim +synonym: "5th digit of hand" EXACT [] +synonym: "5th finger" EXACT [] +synonym: "digit 5 of fore-paw" EXACT [EMAPA:17441] +synonym: "fifth digit of hand" EXACT [FMA:24949] +synonym: "fifth finger" EXACT [] +synonym: "finger 5" EXACT [EHDAA2:0000535] +synonym: "fore digit V" EXACT [AAO:0010643] +synonym: "fore limb digit 5" EXACT [OBOL:accepted] +synonym: "hand digit 5" EXACT [MA:0000458] +synonym: "hand digit 5" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "little finger" NARROW [] +synonym: "manual digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "manual digitus minimus" RELATED LATIN [http://en.wikipedia.org/wiki/Little_finger] +synonym: "manual digitus V" RELATED LATIN [http://en.wikipedia.org/wiki/Little_finger] +synonym: "manus digiti minimi" RELATED [] +synonym: "manus quintus" RELATED LATIN [http://en.wikipedia.org/wiki/Little_finger] +xref: AAO:0010643 +xref: EHDAA2:0000535 +xref: EMAPA:17441 +xref: FMA:24949 +xref: http://linkedlifedata.com/resource/umls/id/C0230403 +xref: http://www.snomedbrowser.com/Codes/Details/362773007 +xref: Little:finger +xref: MA:0000458 +xref: NCIT:C52838 +xref: UMLS:C0230403 {source="ncithesaurus:Hand_Digit_5"} +is_a: UBERON:0006052 ! digit 5 +is_a: UBERON:0019231 ! manual digit 1 or 5 +intersection_of: UBERON:0006052 ! digit 5 +intersection_of: part_of UBERON:0002398 ! manus +relationship: part_of UBERON:5003625 ! manual digit 5 plus metapodial segment + +[Term] +id: UBERON:0003631 +name: pedal digit 1 +def: "1st digit of the hind autopod." [http://en.wikipedia.org/wiki/Hallux] +subset: pheno_slim +synonym: "big toe" NARROW [] +synonym: "digit 1 of hind-paw" EXACT [EMAPA:17460] +synonym: "digit 1 of pes" EXACT [] +synonym: "digitus primus (I) pedis" RELATED [BTO:0002349] +synonym: "digitus primus pedis" EXACT LATIN [] +synonym: "first toe" RELATED [EMAPA:17460] +synonym: "foot digit 1" EXACT [MA:0000465] +synonym: "foot digit 1" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "great toe" EXACT [FMA:25047] +synonym: "hallex" EXACT [] +synonym: "hallux" EXACT LATIN [FMA:TA] +synonym: "hallux; digitus primus [I]" EXACT [FMA:25047] +synonym: "hind digit 1" EXACT [] +synonym: "hind digit I" EXACT [AAO:0010644] +synonym: "hind limb digit 1" EXACT [OBOL:accepted] +synonym: "hindlimb dewclaw" NARROW SENSU [http://en.wikipedia.org/wiki/Dewclaw] +synonym: "large toe" RELATED [EMAPA:17460] +synonym: "pedal digit 1" EXACT [] +synonym: "pedal digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "pes digit I" EXACT [] +synonym: "preaxial digit of hindlimb" EXACT [] +synonym: "toe 1" EXACT [EHDAA2:0002037] +xref: AAO:0010644 +xref: BTO:0002349 +xref: EHDAA2:0002037 +xref: EMAPA:17460 +xref: FMA:25047 +xref: GAID:45 +xref: http://en.wikipedia.org/wiki/Hallux +xref: http://linkedlifedata.com/resource/umls/id/C1708079 +xref: http://www.snomedbrowser.com/Codes/Details/21699005 +xref: http://www.snomedbrowser.com/Codes/Details/302546000 +xref: MA:0000465 +xref: MESH:D006214 +xref: NCIT:C52839 +xref: UMLS:C1708079 {source="ncithesaurus:Foot_Digit_1"} +xref: VSAO:0000201 +is_a: UBERON:0006048 ! digit 1 +is_a: UBERON:0019241 ! pedal digit 1 or 5 +intersection_of: UBERON:0006048 ! digit 1 +intersection_of: part_of UBERON:0002387 ! pes +relationship: part_of UBERON:5003631 ! pedal digit 1 plus metapodial segment +relationship: preaxialmost_part_of UBERON:0002387 ! pes + +[Term] +id: UBERON:0003632 +name: pedal digit 2 +def: "2nd digit of the hind autopod." [https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "2nd toe" EXACT [] +synonym: "digit 2 of hind-paw" EXACT [EMAPA:17463] +synonym: "digitus secundus (II) pedis" RELATED [BTO:0002350] +synonym: "digitus secundus [ii]" EXACT [FMA:25048] +synonym: "digitus secundus pedis" EXACT LATIN [BTO:0002350] +synonym: "foot digit 2" EXACT [MA:0000466] +synonym: "foot digit 2" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind digit 2" EXACT [] +synonym: "hind digit II" EXACT [AAO:0010645] +synonym: "hind limb digit 2" EXACT [OBOL:accepted] +synonym: "pedal digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "pes digit II" EXACT [] +synonym: "second digit of foot" EXACT [FMA:25048] +synonym: "second toe" EXACT [FMA:25048] +synonym: "toe 2" EXACT [EHDAA2:0002042] +xref: AAO:0010645 +xref: BTO:0002350 +xref: EHDAA2:0002042 +xref: EMAPA:17463 +xref: FMA:25048 +xref: http://linkedlifedata.com/resource/umls/id/C1708081 +xref: http://www.snomedbrowser.com/Codes/Details/362817008 +xref: MA:0000466 +xref: NCIT:C52840 +xref: UMLS:C1708081 {source="ncithesaurus:Foot_Digit_2"} +is_a: UBERON:0006049 ! digit 2 +is_a: UBERON:0019242 ! pedal digit 2, 3 or 4 +intersection_of: UBERON:0006049 ! digit 2 +intersection_of: part_of UBERON:0002387 ! pes +relationship: part_of UBERON:5003632 ! pedal digit 2 plus metapodial segment + +[Term] +id: UBERON:0003633 +name: pedal digit 3 +def: "3rd digit of the hind autopod." [https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "3rd toe" EXACT [] +synonym: "digit 3 of hind-paw" EXACT [EMAPA:17466] +synonym: "digitus tertius (III) pedis" EXACT [BTO:0002351] +synonym: "digitus tertius [iii]" EXACT [FMA:25051] +synonym: "digitus tertius pedis" EXACT LATIN [BTO:0002351] +synonym: "foot digit 3" EXACT [MA:0000467] +synonym: "foot digit 3" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind digit 3" EXACT [] +synonym: "hind digit III" EXACT [AAO:0010646] +synonym: "hind limb digit 3" EXACT [OBOL:accepted] +synonym: "pedal digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "pes digit III" EXACT [] +synonym: "third digit of foot" EXACT [FMA:25051] +synonym: "third toe" EXACT [FMA:25051] +synonym: "toe 3" EXACT [EHDAA2:0002047] +xref: AAO:0010646 +xref: BTO:0002351 +xref: EHDAA2:0002047 +xref: EMAPA:17466 +xref: FMA:25051 +xref: http://linkedlifedata.com/resource/umls/id/C1708083 +xref: http://www.snomedbrowser.com/Codes/Details/362821001 +xref: MA:0000467 +xref: NCIT:C52841 +xref: UMLS:C1708083 {source="ncithesaurus:Foot_Digit_3"} +is_a: UBERON:0006050 ! digit 3 +is_a: UBERON:0019242 ! pedal digit 2, 3 or 4 +intersection_of: UBERON:0006050 ! digit 3 +intersection_of: part_of UBERON:0002387 ! pes +relationship: part_of UBERON:5003633 ! pedal digit 3 plus metapodial segment + +[Term] +id: UBERON:0003634 +name: pedal digit 4 +def: "4th digit of the hind autopod." [https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "4th toe" EXACT [] +synonym: "digit 4 of hind-paw" EXACT [EMAPA:17469] +synonym: "digitus quartis pedis" EXACT LATIN [BTO:0002352] +synonym: "digitus quartus (IV) pedis" RELATED [BTO:0002352] +synonym: "digitus quartus [iv]" EXACT [FMA:25052] +synonym: "foot digit 4" EXACT [MA:0000468] +synonym: "foot digit 4" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "fourth digit of foot" EXACT [FMA:25052] +synonym: "fourth toe" EXACT [FMA:25052] +synonym: "hind digit 4" EXACT [] +synonym: "hind digit IV" EXACT [AAO:0010656] +synonym: "hind limb digit 4" EXACT [OBOL:accepted] +synonym: "pedal digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "pes digit IV" EXACT [] +synonym: "toe 4" EXACT [EHDAA2:0002052] +xref: AAO:0010656 +xref: BTO:0002352 +xref: EHDAA2:0002052 +xref: EMAPA:17469 +xref: FMA:25052 +xref: http://linkedlifedata.com/resource/umls/id/C1708085 +xref: http://www.snomedbrowser.com/Codes/Details/362826006 +xref: MA:0000468 +xref: NCIT:C52842 +xref: UMLS:C1708085 {source="ncithesaurus:Foot_Digit_4"} +is_a: UBERON:0006051 ! digit 4 +is_a: UBERON:0019242 ! pedal digit 2, 3 or 4 +relationship: part_of UBERON:5003634 ! pedal digit 4 plus metapodial segment + +[Term] +id: UBERON:0003635 +name: pedal digit 5 +def: "5th digit of the hind autopod." [http://en.wikipedia.org/wiki/Fifth_toe, https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "5th toe" EXACT [] +synonym: "digit 5 of hind-paw" EXACT [EMAPA:17472] +synonym: "digitus minimus pedis" EXACT LATIN [http://en.wikipedia.org/wiki/Fifth_toe] +synonym: "digitus minimus; digitus quintus [v]" EXACT [FMA:25053] +synonym: "digitus quintus (V) pedis" RELATED [BTO:0002353] +synonym: "digitus quintus [V]" EXACT [FMA:25053] +synonym: "digitus quintus [V] pedis" EXACT LATIN [FMA:25053, FMA:TA] +synonym: "digitus quintus of pes" EXACT [] +synonym: "digitus quintus pedis" EXACT LATIN [http://en.wikipedia.org/wiki/Fifth_toe] +synonym: "digitus V of pes" EXACT [] +synonym: "fifth digit of foot" EXACT [FMA:25053] +synonym: "fifth toe" EXACT [FMA:25053] +synonym: "foot digit 5" EXACT [MA:0000469] +synonym: "foot digit 5" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind digit 5" EXACT [] +synonym: "hind digit V" EXACT [AAO:0010658] +synonym: "hind limb digit 5" EXACT [OBOL:accepted] +synonym: "little toe" NARROW [] +synonym: "pedal digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "pedal digitus minimus" EXACT [] +synonym: "pes digit V" EXACT [] +synonym: "toe 5" EXACT [EHDAA2:0002057] +xref: AAO:0010658 +xref: BTO:0002353 +xref: EHDAA2:0002057 +xref: EMAPA:17472 +xref: Fifth:toe +xref: FMA:25053 +xref: http://linkedlifedata.com/resource/umls/id/C1708087 +xref: http://www.snomedbrowser.com/Codes/Details/362830009 +xref: MA:0000469 +xref: NCIT:C52843 +xref: UMLS:C1708087 {source="ncithesaurus:Foot_Digit_5"} +is_a: UBERON:0006052 ! digit 5 +is_a: UBERON:0019241 ! pedal digit 1 or 5 +intersection_of: UBERON:0006052 ! digit 5 +intersection_of: part_of UBERON:0002387 ! pes +relationship: part_of UBERON:5003635 ! pedal digit 5 plus metapodial segment + +[Term] +id: UBERON:0003636 +name: manual digit 2 phalanx +def: "A phalanx that is part of a hand digit 2 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "2 nd digit of hand digit long bone" EXACT [OBOL:automatic] +synonym: "2 nd digit of hand long bone of digit" EXACT [OBOL:automatic] +synonym: "2 nd digit of hand phalanx" EXACT [OBOL:automatic] +synonym: "2 nd finger digit long bone" EXACT [OBOL:automatic] +synonym: "2 nd finger long bone of digit" EXACT [OBOL:automatic] +synonym: "2 nd finger phalanx" EXACT [OBOL:automatic] +synonym: "digit long bone of 2 nd digit of hand" EXACT [OBOL:automatic] +synonym: "digit long bone of 2 nd finger" EXACT [OBOL:automatic] +synonym: "digit long bone of hand digit 2" EXACT [OBOL:automatic] +synonym: "digit long bone of second finger" EXACT [OBOL:automatic] +synonym: "fore limb digit 2 phalanx" EXACT [OBOL:accepted] +synonym: "hand digit 2 digit long bone" EXACT [OBOL:automatic] +synonym: "hand digit 2 long bone of digit" EXACT [OBOL:automatic] +synonym: "hand digit 2 phalanx" EXACT [MA:0001390] +synonym: "hand digit 2 phalanx" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "index finger phalanx" EXACT [FMA:35480] +synonym: "long bone of digit of 2 nd digit of hand" EXACT [OBOL:automatic] +synonym: "long bone of digit of 2 nd finger" EXACT [OBOL:automatic] +synonym: "long bone of digit of hand digit 2" EXACT [OBOL:automatic] +synonym: "long bone of digit of second finger" EXACT [OBOL:automatic] +synonym: "manual digit II phalanx" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "phalanx of 2 nd digit of hand" EXACT [OBOL:automatic] +synonym: "phalanx of 2 nd finger" EXACT [OBOL:automatic] +synonym: "phalanx of hand digit 2" EXACT [OBOL:automatic] +synonym: "phalanx of index finger" EXACT [FMA:35480] +synonym: "phalanx of manual digit 2" EXACT [OBOL:accepted] +synonym: "phalanx of second finger" EXACT [OBOL:automatic] +synonym: "second finger digit long bone" EXACT [OBOL:automatic] +synonym: "second finger long bone of digit" EXACT [OBOL:automatic] +synonym: "second finger phalanx" EXACT [OBOL:automatic] +xref: EMAPA:19115 +xref: FMA:35480 +xref: http://linkedlifedata.com/resource/umls/id/C1708312 +xref: http://www.snomedbrowser.com/Codes/Details/361783009 +xref: MA:0001390 +xref: NCIT:C52776 +xref: UMLS:C1708312 {source="ncithesaurus:Hand_Digit_2_Phalanx"} +is_a: UBERON:0001436 ! phalanx of manus +is_a: UBERON:0015026 ! manual digit 2 phalanx endochondral element +intersection_of: UBERON:0003221 ! phalanx +intersection_of: part_of UBERON:0003622 ! manual digit 2 +relationship: develops_from UBERON:0010676 ! manual digit 2 phalanx cartilage element + +[Term] +id: UBERON:0003637 +name: manual digit 3 phalanx +def: "A phalanx that is part of a hand digit 3 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "3 rd digit of hand digit long bone" EXACT [OBOL:automatic] +synonym: "3 rd digit of hand long bone of digit" EXACT [OBOL:automatic] +synonym: "3 rd digit of hand phalanx" EXACT [OBOL:automatic] +synonym: "3 rd finger digit long bone" EXACT [OBOL:automatic] +synonym: "3 rd finger long bone of digit" EXACT [OBOL:automatic] +synonym: "3 rd finger phalanx" EXACT [OBOL:automatic] +synonym: "digit long bone of 3 rd digit of hand" EXACT [OBOL:automatic] +synonym: "digit long bone of 3 rd finger" EXACT [OBOL:automatic] +synonym: "digit long bone of hand digit 3" EXACT [OBOL:automatic] +synonym: "digit long bone of third finger" EXACT [OBOL:automatic] +synonym: "fore limb digit 3 phalanx" EXACT [OBOL:accepted] +synonym: "hand digit 3 digit long bone" EXACT [OBOL:automatic] +synonym: "hand digit 3 long bone of digit" EXACT [OBOL:automatic] +synonym: "hand digit 3 phalanx" EXACT [MA:0001391] +synonym: "hand digit 3 phalanx" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "long bone of digit of 3 rd digit of hand" EXACT [OBOL:automatic] +synonym: "long bone of digit of 3 rd finger" EXACT [OBOL:automatic] +synonym: "long bone of digit of hand digit 3" EXACT [OBOL:automatic] +synonym: "long bone of digit of third finger" EXACT [OBOL:automatic] +synonym: "manual digit III phalanx" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "middle finger phalanx" EXACT [FMA:35483] +synonym: "phalanx of 3 rd digit of hand" EXACT [OBOL:automatic] +synonym: "phalanx of 3 rd finger" EXACT [OBOL:automatic] +synonym: "phalanx of hand digit 3" EXACT [OBOL:automatic] +synonym: "phalanx of middle finger" EXACT [FMA:35483] +synonym: "phalanx of third finger" EXACT [OBOL:automatic] +synonym: "third finger digit long bone" EXACT [OBOL:automatic] +synonym: "third finger long bone of digit" EXACT [OBOL:automatic] +synonym: "third finger phalanx" EXACT [OBOL:automatic] +xref: EMAPA:19117 +xref: FMA:35483 +xref: http://linkedlifedata.com/resource/umls/id/C1708314 +xref: http://www.snomedbrowser.com/Codes/Details/361785002 +xref: MA:0001391 +xref: NCIT:C52775 +xref: UMLS:C1708314 {source="ncithesaurus:Hand_Digit_3_Phalanx"} +is_a: UBERON:0001436 ! phalanx of manus +is_a: UBERON:0015027 ! manual digit 3 phalanx endochondral element +intersection_of: UBERON:0003221 ! phalanx +intersection_of: part_of UBERON:0003623 ! manual digit 3 +relationship: develops_from UBERON:0010677 ! manual digit 3 phalanx cartilage element + +[Term] +id: UBERON:0003638 +name: manual digit 4 phalanx +def: "A phalanx that is part of a hand digit 4 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "4 th digit of hand digit long bone" EXACT [OBOL:automatic] +synonym: "4 th digit of hand long bone of digit" EXACT [OBOL:automatic] +synonym: "4 th digit of hand phalanx" EXACT [OBOL:automatic] +synonym: "4 th finger digit long bone" EXACT [OBOL:automatic] +synonym: "4 th finger long bone of digit" EXACT [OBOL:automatic] +synonym: "4 th finger phalanx" EXACT [OBOL:automatic] +synonym: "digit long bone of 4 th digit of hand" EXACT [OBOL:automatic] +synonym: "digit long bone of 4 th finger" EXACT [OBOL:automatic] +synonym: "digit long bone of fourth finger" EXACT [OBOL:automatic] +synonym: "digit long bone of hand digit 4" EXACT [OBOL:automatic] +synonym: "fore limb digit 4 phalanx" EXACT [OBOL:accepted] +synonym: "fourth finger digit long bone" EXACT [OBOL:automatic] +synonym: "fourth finger long bone of digit" EXACT [OBOL:automatic] +synonym: "fourth finger phalanx" EXACT [OBOL:automatic] +synonym: "hand digit 4 digit long bone" EXACT [OBOL:automatic] +synonym: "hand digit 4 long bone of digit" EXACT [OBOL:automatic] +synonym: "hand digit 4 phalanx" EXACT [MA:0001392] +synonym: "hand digit 4 phalanx" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "long bone of digit of 4 th digit of hand" EXACT [OBOL:automatic] +synonym: "long bone of digit of 4 th finger" EXACT [OBOL:automatic] +synonym: "long bone of digit of fourth finger" EXACT [OBOL:automatic] +synonym: "long bone of digit of hand digit 4" EXACT [OBOL:automatic] +synonym: "manual digit IV phalanx" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "phalanx of 4 th digit of hand" EXACT [OBOL:automatic] +synonym: "phalanx of 4 th finger" EXACT [OBOL:automatic] +synonym: "phalanx of fourth finger" EXACT [OBOL:automatic] +synonym: "phalanx of hand digit 4" EXACT [OBOL:automatic] +synonym: "phalanx of ring finger" EXACT [FMA:35486] +synonym: "ring finger phalanx" EXACT [FMA:35486] +xref: EMAPA:19119 +xref: FMA:35486 +xref: http://linkedlifedata.com/resource/umls/id/C1708316 +xref: http://www.snomedbrowser.com/Codes/Details/361787005 +xref: MA:0001392 +xref: NCIT:C52774 +xref: UMLS:C1708316 {source="ncithesaurus:Hand_Digit_4_Phalanx"} +is_a: UBERON:0001436 ! phalanx of manus +is_a: UBERON:0015028 ! manual digit 4 phalanx endochondral element +intersection_of: UBERON:0003221 ! phalanx +intersection_of: part_of UBERON:0003624 ! manual digit 4 +relationship: develops_from UBERON:0010678 ! manual digit 4 phalanx cartilage element + +[Term] +id: UBERON:0003639 +name: manual digit 5 phalanx +def: "A phalanx that is part of a hand digit 5 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "5 th digit of hand digit long bone" EXACT [OBOL:automatic] +synonym: "5 th digit of hand long bone of digit" EXACT [OBOL:automatic] +synonym: "5 th digit of hand phalanx" EXACT [OBOL:automatic] +synonym: "5 th finger digit long bone" EXACT [OBOL:automatic] +synonym: "5 th finger long bone of digit" EXACT [OBOL:automatic] +synonym: "5 th finger phalanx" EXACT [OBOL:automatic] +synonym: "digit long bone of 5 th digit of hand" EXACT [OBOL:automatic] +synonym: "digit long bone of 5 th finger" EXACT [OBOL:automatic] +synonym: "digit long bone of fifth finger" EXACT [OBOL:automatic] +synonym: "digit long bone of hand digit 5" EXACT [OBOL:automatic] +synonym: "fifth finger digit long bone" EXACT [OBOL:automatic] +synonym: "fifth finger long bone of digit" EXACT [OBOL:automatic] +synonym: "fifth finger phalanx" EXACT [OBOL:automatic] +synonym: "fore limb digit 5 phalanx" EXACT [OBOL:accepted] +synonym: "hand digit 5 digit long bone" EXACT [OBOL:automatic] +synonym: "hand digit 5 long bone of digit" EXACT [OBOL:automatic] +synonym: "hand digit 5 phalanx" EXACT [MA:0001393] +synonym: "hand digit 5 phalanx" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "little finger phalanx" EXACT [FMA:35489] +synonym: "long bone of digit of 5 th digit of hand" EXACT [OBOL:automatic] +synonym: "long bone of digit of 5 th finger" EXACT [OBOL:automatic] +synonym: "long bone of digit of fifth finger" EXACT [OBOL:automatic] +synonym: "long bone of digit of hand digit 5" EXACT [OBOL:automatic] +synonym: "manual digit V phalanx" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "phalanx of 5 th digit of hand" EXACT [OBOL:automatic] +synonym: "phalanx of 5 th finger" EXACT [OBOL:automatic] +synonym: "phalanx of 5th finger" EXACT [] +synonym: "phalanx of fifth digit of hand" EXACT [FMA:35489] +synonym: "phalanx of fifth finger" EXACT [OBOL:automatic] +synonym: "phalanx of hand digit 5" EXACT [OBOL:automatic] +synonym: "phalanx of little finger" EXACT [FMA:35489] +synonym: "phalanx of manual digitus minimus" EXACT [OBOL:automatic] +xref: EMAPA:19121 +xref: FMA:35489 +xref: http://linkedlifedata.com/resource/umls/id/C1708317 +xref: http://www.snomedbrowser.com/Codes/Details/361789008 +xref: MA:0001393 +xref: NCIT:C52773 +xref: UMLS:C1708317 {source="ncithesaurus:Hand_Digit_5_Phalanx"} +is_a: UBERON:0001436 ! phalanx of manus +is_a: UBERON:0015029 ! manual digit 5 phalanx endochondral element +intersection_of: UBERON:0003221 ! phalanx +intersection_of: part_of UBERON:0003625 ! manual digit 5 +relationship: develops_from UBERON:0010679 ! manual digit 5 phalanx cartilage element + +[Term] +id: UBERON:0003640 +name: pedal digit 1 phalanx +def: "A phalanx that is part of a foot digit 1 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "big toe phalanx" EXACT [FMA:32884] +synonym: "digit long bone of foot digit 1" EXACT [OBOL:automatic] +synonym: "digit long bone of hallux" EXACT [OBOL:automatic] +synonym: "foot digit 1 digit long bone" EXACT [OBOL:automatic] +synonym: "foot digit 1 long bone of digit" EXACT [OBOL:automatic] +synonym: "foot digit 1 phalanx" EXACT [MA:0001381] +synonym: "foot digit 1 phalanx" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hallux digit long bone" EXACT [OBOL:automatic] +synonym: "hallux long bone of digit" EXACT [OBOL:automatic] +synonym: "hallux phalanx" EXACT [OBOL:automatic] +synonym: "hind limb digit 1 phalanx" EXACT [OBOL:accepted] +synonym: "long bone of digit of foot digit 1" EXACT [OBOL:automatic] +synonym: "long bone of digit of hallux" EXACT [OBOL:automatic] +synonym: "pedal digit I phalanx" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "phalanx of big toe" EXACT [FMA:32884] +synonym: "phalanx of first digit of foot" EXACT [FMA:32884] +synonym: "phalanx of first toe" RELATED [FMA:32884] +synonym: "phalanx of foot digit 1" EXACT [OBOL:automatic] +synonym: "phalanx of great toe" EXACT [FMA:32884] +synonym: "phalanx of hallux" EXACT [OBOL:automatic] +xref: EMAPA:19124 +xref: FMA:32884 +xref: http://linkedlifedata.com/resource/umls/id/C1708080 +xref: http://www.snomedbrowser.com/Codes/Details/361798006 +xref: MA:0001381 +xref: NCIT:C52778 +xref: UMLS:C1708080 {source="ncithesaurus:Foot_Digit_1_Phalanx"} +is_a: UBERON:0001449 ! phalanx of pes +is_a: UBERON:0015031 ! pedal digit 1 phalanx endochondral element +intersection_of: UBERON:0003221 ! phalanx +intersection_of: part_of UBERON:0003631 ! pedal digit 1 +relationship: develops_from UBERON:0010680 ! pedal digit 1 phalanx cartilage element + +[Term] +id: UBERON:0003641 +name: pedal digit 2 phalanx +def: "A phalanx that is part of a foot digit 2 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "digit long bone of foot digit 2" EXACT [OBOL:automatic] +synonym: "foot digit 2 digit long bone" EXACT [OBOL:automatic] +synonym: "foot digit 2 long bone of digit" EXACT [OBOL:automatic] +synonym: "foot digit 2 phalanx" EXACT [MA:0001382] +synonym: "foot digit 2 phalanx" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 2 phalanx" EXACT [OBOL:accepted] +synonym: "long bone of digit of foot digit 2" EXACT [OBOL:automatic] +synonym: "pedal digit II phalanx" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "phalanx of foot digit 2" EXACT [OBOL:automatic] +synonym: "phalanx of second toe" EXACT [FMA:32899] +synonym: "second toe phalanx" EXACT [FMA:32899] +xref: EMAPA:19126 +xref: FMA:32899 +xref: http://linkedlifedata.com/resource/umls/id/C1708082 +xref: http://www.snomedbrowser.com/Codes/Details/361800004 +xref: MA:0001382 +xref: NCIT:C52779 +xref: UMLS:C1708082 {source="ncithesaurus:Foot_Digit_2_Phalanx"} +is_a: UBERON:0001449 ! phalanx of pes +is_a: UBERON:0015032 ! pedal digit 2 phalanx endochondral element +intersection_of: UBERON:0003221 ! phalanx +intersection_of: part_of UBERON:0003632 ! pedal digit 2 +relationship: develops_from UBERON:0010681 ! pedal digit 2 phalanx cartilage element + +[Term] +id: UBERON:0003642 +name: pedal digit 3 phalanx +def: "A phalanx that is part of a foot digit 3 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "digit long bone of foot digit 3" EXACT [OBOL:automatic] +synonym: "foot digit 3 digit long bone" EXACT [OBOL:automatic] +synonym: "foot digit 3 long bone of digit" EXACT [OBOL:automatic] +synonym: "foot digit 3 phalanx" EXACT [MA:0001383] +synonym: "foot digit 3 phalanx" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 3 phalanx" EXACT [OBOL:accepted] +synonym: "long bone of digit of foot digit 3" EXACT [OBOL:automatic] +synonym: "pedal digit III phalanx" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "phalanx of foot digit 3" EXACT [OBOL:automatic] +synonym: "phalanx of third toe" EXACT [FMA:32900] +synonym: "third toe phalanx" EXACT [FMA:32900] +xref: EMAPA:19128 +xref: FMA:32900 +xref: http://linkedlifedata.com/resource/umls/id/C1708084 +xref: http://www.snomedbrowser.com/Codes/Details/361802007 +xref: MA:0001383 +xref: NCIT:C52780 +xref: UMLS:C1708084 {source="ncithesaurus:Foot_Digit_3_Phalanx"} +is_a: UBERON:0001449 ! phalanx of pes +is_a: UBERON:0015033 ! pedal digit 3 phalanx endochondral element +intersection_of: UBERON:0003221 ! phalanx +intersection_of: part_of UBERON:0003633 ! pedal digit 3 +relationship: develops_from UBERON:0010682 ! pedal digit 3 phalanx cartilage element + +[Term] +id: UBERON:0003643 +name: respiratory system arterial blood vessel +def: "An arterial blood vessel that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:37565 {source="MA:th"} +xref: MA:0001800 +is_a: UBERON:0003504 ! respiratory system blood vessel +is_a: UBERON:0003509 ! arterial blood vessel +intersection_of: UBERON:0003509 ! arterial blood vessel +intersection_of: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0003644 +name: kidney arterial blood vessel +def: "An arterial blood vessel that is part of a kidney [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "kidney arterial system" RELATED [EMAPA:31436] +xref: EMAPA:31436 +xref: MA:0002578 +is_a: UBERON:0003509 ! arterial blood vessel +is_a: UBERON:0003517 ! kidney blood vessel +intersection_of: UBERON:0003509 ! arterial blood vessel +intersection_of: part_of UBERON:0002113 ! kidney + +[Term] +id: UBERON:0003645 +name: metacarpal bone of digit 1 +def: "A metacarpal bone that distally_connected_to a proximal phalanx of manual digit 1." [OBOL:automatic] +subset: pheno_slim +synonym: "finger 1 metacarpus" EXACT [] +synonym: "first digit of hand metacarpal" EXACT [OBOL:automatic] +synonym: "first digit of hand metacarpal bone" EXACT [OBOL:automatic] +synonym: "first metacarpal bone" EXACT [FMA:23899] +synonym: "forelimb digit 1 metacarpus" RELATED [EMAPA:19112] +synonym: "hand digit 1 metacarpal" EXACT [OBOL:automatic] +synonym: "hand digit 1 metacarpal bone" EXACT [OBOL:automatic] +synonym: "manual digit 1 metacarpus" EXACT [] +synonym: "metacarpal 1" EXACT [] +synonym: "metacarpal bone digit 1" EXACT [MA:0001364] +synonym: "metacarpal bone of digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "metacarpal bone of first digit of hand" EXACT [OBOL:automatic] +synonym: "metacarpal bone of hand digit 1" EXACT [OBOL:automatic] +synonym: "metacarpal bone of thumb" EXACT [OBOL:automatic] +synonym: "metacarpal I" EXACT [FMA:23899] +synonym: "metacarpal of first digit of hand" EXACT [OBOL:automatic] +synonym: "metacarpal of hand digit 1" EXACT [OBOL:automatic] +synonym: "metacarpal of thumb" EXACT [OBOL:automatic] +synonym: "thumb metacarpal" EXACT [OBOL:automatic] +synonym: "thumb metacarpal bone" EXACT [OBOL:automatic] +xref: AAO:0010616 +xref: EMAPA:19112 +xref: FMA:23899 +xref: http://linkedlifedata.com/resource/umls/id/C1708987 +xref: http://www.snomedbrowser.com/Codes/Details/181973009 +xref: MA:0001364 +xref: NCIT:C52796 +xref: UMLS:C1708987 {source="ncithesaurus:Metacarpal_Bone_Digit_1"} +is_a: UBERON:0002374 ! metacarpal bone +is_a: UBERON:0013581 ! metapodium bone 1 +is_a: UBERON:0015043 ! manual digit 1 metacarpus endochondral element +intersection_of: UBERON:0015043 ! manual digit 1 metacarpus endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010570 ! manual digit 1 metacarpus cartilage element + +[Term] +id: UBERON:0003646 +name: metacarpal bone of digit 2 +def: "A metacarpal bone that distally_connected_to a proximal phalanx of manual digit 2." [OBOL:automatic] +subset: pheno_slim +synonym: "2 nd digit of hand metacarpal" EXACT [OBOL:automatic] +synonym: "2 nd digit of hand metacarpal bone" EXACT [OBOL:automatic] +synonym: "2 nd finger metacarpal" EXACT [OBOL:automatic] +synonym: "2 nd finger metacarpal bone" EXACT [OBOL:automatic] +synonym: "finger 2 metacarpus" EXACT [] +synonym: "forelimb digit 2 metacarpus" RELATED [EMAPA:19114] +synonym: "hand digit 2 metacarpal" EXACT [OBOL:automatic] +synonym: "hand digit 2 metacarpal bone" EXACT [OBOL:automatic] +synonym: "manual digit 2 metacarpus" EXACT [] +synonym: "metacarpal 2" EXACT [] +synonym: "metacarpal bone digit 2" EXACT [MA:0001365] +synonym: "metacarpal bone of 2 nd digit of hand" EXACT [OBOL:automatic] +synonym: "metacarpal bone of 2 nd finger" EXACT [OBOL:automatic] +synonym: "metacarpal bone of digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "metacarpal bone of hand digit 2" EXACT [OBOL:automatic] +synonym: "metacarpal bone of second finger" EXACT [OBOL:automatic] +synonym: "metacarpal II" EXACT [FMA:23900] +synonym: "metacarpal of 2 nd digit of hand" EXACT [OBOL:automatic] +synonym: "metacarpal of 2 nd finger" EXACT [OBOL:automatic] +synonym: "metacarpal of hand digit 2" EXACT [OBOL:automatic] +synonym: "metacarpal of second finger" EXACT [OBOL:automatic] +synonym: "second finger metacarpal" EXACT [OBOL:automatic] +synonym: "second finger metacarpal bone" EXACT [OBOL:automatic] +synonym: "second metacarpal bone" EXACT [FMA:23900] +xref: AAO:0000853 +xref: EMAPA:19114 +xref: FMA:23900 +xref: http://linkedlifedata.com/resource/umls/id/C1708988 +xref: http://www.snomedbrowser.com/Codes/Details/263399007 +xref: MA:0001365 +xref: NCIT:C52795 +xref: UMLS:C1708988 {source="ncithesaurus:Metacarpal_Bone_Digit_2"} +is_a: UBERON:0002374 ! metacarpal bone +is_a: UBERON:0013582 ! metapodium bone 2 +is_a: UBERON:0015044 ! manual digit 2 metacarpus endochondral element +intersection_of: UBERON:0015044 ! manual digit 2 metacarpus endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010571 ! manual digit 2 metacarpus cartilage element + +[Term] +id: UBERON:0003647 +name: metacarpal bone of digit 3 +def: "A metacarpal bone that distally_connected_to a proximal phalanx of manual digit 3[Automatically generated definition]." [http://en.wikipedia.org/wiki/Third_metacarpal_bone, OBOL:automatic] +subset: pheno_slim +synonym: "3 rd digit of hand metacarpal" EXACT [OBOL:automatic] +synonym: "3 rd digit of hand metacarpal bone" EXACT [OBOL:automatic] +synonym: "3 rd finger metacarpal" EXACT [OBOL:automatic] +synonym: "3 rd finger metacarpal bone" EXACT [OBOL:automatic] +synonym: "finger 3 metacarpus" EXACT [] +synonym: "forelimb cannon bone" NARROW SENSU [https://orcid.org/0000-0002-6601-2165] +synonym: "forelimb digit 3 metacarpus" RELATED [EMAPA:19116] +synonym: "hand digit 3 metacarpal" EXACT [OBOL:automatic] +synonym: "hand digit 3 metacarpal bone" EXACT [OBOL:automatic] +synonym: "manual digit 3 metacarpus" EXACT [] +synonym: "metacarpal 3" EXACT [] +synonym: "metacarpal bone digit 3" EXACT [MA:0001366] +synonym: "metacarpal bone of 3 rd digit of hand" EXACT [OBOL:automatic] +synonym: "metacarpal bone of 3 rd finger" EXACT [OBOL:automatic] +synonym: "metacarpal bone of digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "metacarpal bone of hand digit 3" EXACT [OBOL:automatic] +synonym: "metacarpal bone of third finger" EXACT [OBOL:automatic] +synonym: "metacarpal III" EXACT [FMA:23901] +synonym: "metacarpal of 3 rd digit of hand" EXACT [OBOL:automatic] +synonym: "metacarpal of 3 rd finger" EXACT [OBOL:automatic] +synonym: "metacarpal of hand digit 3" EXACT [OBOL:automatic] +synonym: "metacarpal of third finger" EXACT [OBOL:automatic] +synonym: "third finger metacarpal" EXACT [OBOL:automatic] +synonym: "third finger metacarpal bone" EXACT [OBOL:automatic] +synonym: "third metacarpal bone" EXACT [FMA:23901] +xref: AAO:0000854 +xref: EMAPA:19116 +xref: FMA:23901 +xref: http://en.wikipedia.org/wiki/Third_metacarpal_bone +xref: http://linkedlifedata.com/resource/umls/id/C1708989 +xref: http://www.snomedbrowser.com/Codes/Details/263400000 +xref: MA:0001366 +xref: NCIT:C52794 +xref: UMLS:C1708989 {source="ncithesaurus:Metacarpal_Bone_Digit_3"} +is_a: UBERON:0002374 ! metacarpal bone +is_a: UBERON:0013583 ! metapodium bone 3 +is_a: UBERON:0015045 ! manual digit 3 metacarpus endochondral element +intersection_of: UBERON:0015045 ! manual digit 3 metacarpus endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010572 ! manual digit 3 metacarpus cartilage element + +[Term] +id: UBERON:0003648 +name: metacarpal bone of digit 4 +def: "A metacarpal bone that distally_connected_to a proximal phalanx of manual digit 4." [OBOL:automatic] +subset: pheno_slim +synonym: "4 th digit of hand metacarpal" EXACT [OBOL:automatic] +synonym: "4 th digit of hand metacarpal bone" EXACT [OBOL:automatic] +synonym: "4 th finger metacarpal" EXACT [OBOL:automatic] +synonym: "4 th finger metacarpal bone" EXACT [OBOL:automatic] +synonym: "finger 4 metacarpus" EXACT [] +synonym: "forelimb digit 4 metacarpus" RELATED [EMAPA:19118] +synonym: "fourth finger metacarpal" EXACT [OBOL:automatic] +synonym: "fourth finger metacarpal bone" EXACT [OBOL:automatic] +synonym: "fourth metacarpal bone" EXACT [FMA:23902] +synonym: "hand digit 4 metacarpal" EXACT [OBOL:automatic] +synonym: "hand digit 4 metacarpal bone" EXACT [OBOL:automatic] +synonym: "manual digit 4 metacarpus" EXACT [] +synonym: "metacarpal 4" EXACT [] +synonym: "metacarpal bone digit 4" EXACT [MA:0001367] +synonym: "metacarpal bone of 4 th digit of hand" EXACT [OBOL:automatic] +synonym: "metacarpal bone of 4 th finger" EXACT [OBOL:automatic] +synonym: "metacarpal bone of digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "metacarpal bone of fourth finger" EXACT [OBOL:automatic] +synonym: "metacarpal bone of hand digit 4" EXACT [OBOL:automatic] +synonym: "metacarpal IV" EXACT [FMA:23902] +synonym: "metacarpal of 4 th digit of hand" EXACT [OBOL:automatic] +synonym: "metacarpal of 4 th finger" EXACT [OBOL:automatic] +synonym: "metacarpal of fourth finger" EXACT [OBOL:automatic] +synonym: "metacarpal of hand digit 4" EXACT [OBOL:automatic] +xref: AAO:0010615 +xref: EMAPA:19118 +xref: FMA:23902 +xref: http://linkedlifedata.com/resource/umls/id/C1708990 +xref: http://www.snomedbrowser.com/Codes/Details/263401001 +xref: MA:0001367 +xref: NCIT:C52793 +xref: UMLS:C1708990 {source="ncithesaurus:Metacarpal_Bone_Digit_4"} +is_a: UBERON:0002374 ! metacarpal bone +is_a: UBERON:0013584 ! metapodium bone 4 +is_a: UBERON:0015046 ! manual digit 4 metacarpus endochondral element +intersection_of: UBERON:0015046 ! manual digit 4 metacarpus endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010573 ! manual digit 4 metacarpus cartilage element + +[Term] +id: UBERON:0003649 +name: metacarpal bone of digit 5 +def: "A metacarpal bone that distally_connected_to a proximal phalanx of manual digit 5." [OBOL:automatic] +subset: pheno_slim +synonym: "5 th digit of hand metacarpal" EXACT [OBOL:automatic] +synonym: "5 th digit of hand metacarpal bone" EXACT [OBOL:automatic] +synonym: "5 th finger metacarpal" EXACT [OBOL:automatic] +synonym: "5 th finger metacarpal bone" EXACT [OBOL:automatic] +synonym: "fifth finger metacarpal" EXACT [OBOL:automatic] +synonym: "fifth finger metacarpal bone" EXACT [OBOL:automatic] +synonym: "fifth metacarpal bone" EXACT [FMA:23903] +synonym: "finger 5 metacarpus" EXACT [] +synonym: "forelimb digit 5 metacarpus" RELATED [EMAPA:19120] +synonym: "hand digit 5 metacarpal" EXACT [OBOL:automatic] +synonym: "hand digit 5 metacarpal bone" EXACT [OBOL:automatic] +synonym: "manual digit 5 metacarpus" EXACT [] +synonym: "metacarpal 5" EXACT [] +synonym: "metacarpal bone digit 5" EXACT [MA:0001368] +synonym: "metacarpal bone of 5 th digit of hand" EXACT [OBOL:automatic] +synonym: "metacarpal bone of 5 th finger" EXACT [OBOL:automatic] +synonym: "metacarpal bone of digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "metacarpal bone of fifth finger" EXACT [OBOL:automatic] +synonym: "metacarpal bone of hand digit 5" EXACT [OBOL:automatic] +synonym: "metacarpal of 5 th digit of hand" EXACT [OBOL:automatic] +synonym: "metacarpal of 5 th finger" EXACT [OBOL:automatic] +synonym: "metacarpal of fifth finger" EXACT [OBOL:automatic] +synonym: "metacarpal of hand digit 5" EXACT [OBOL:automatic] +synonym: "metacarpal V" EXACT [] +xref: AAO:0000855 +xref: EMAPA:19120 +xref: FMA:23903 +xref: http://linkedlifedata.com/resource/umls/id/C1711224 +xref: http://www.snomedbrowser.com/Codes/Details/263402008 +xref: MA:0001368 +xref: NCIT:C52792 +xref: UMLS:C1711224 {source="ncithesaurus:Metacarpal_Bone_Digit_5"} +is_a: UBERON:0002374 ! metacarpal bone +is_a: UBERON:0013585 ! metapodium bone 5 +is_a: UBERON:0015047 ! manual digit 5 metacarpus endochondral element +intersection_of: UBERON:0015047 ! manual digit 5 metacarpus endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010574 ! manual digit 5 metacarpus cartilage element + +[Term] +id: UBERON:0003650 +name: metatarsal bone of digit 1 +def: "A metatarsal bone that distally_connected_to a proximal phalanx of pedal digit 1." [OBOL:automatic] +subset: pheno_slim +synonym: "first metatarsal bone" EXACT [FMA:24502] +synonym: "foot digit 1 metatarsal bone" EXACT [OBOL:automatic] +synonym: "hallux metatarsal bone" EXACT [OBOL:automatic] +synonym: "hindlimb digit 1 metatarsus" RELATED [EMAPA:19123] +synonym: "metatarsal 1" EXACT [] +synonym: "metatarsal bone digit 1" EXACT [MA:0001369] +synonym: "metatarsal bone of digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "metatarsal bone of foot digit 1" EXACT [OBOL:automatic] +synonym: "metatarsal bone of hallux" EXACT [OBOL:automatic] +synonym: "metatarsal I" EXACT [AAO:0000925] +synonym: "toe 1 metatarsal" EXACT [] +synonym: "toe 1 metatarsus" EXACT [] +xref: AAO:0000925 +xref: EMAPA:19123 +xref: FMA:24502 +xref: http://linkedlifedata.com/resource/umls/id/C1708999 +xref: http://www.snomedbrowser.com/Codes/Details/182121005 +xref: MA:0001369 +xref: NCIT:C52791 +xref: UMLS:C1708999 {source="ncithesaurus:Metatarsal_Bone_Digit_1"} +is_a: UBERON:0001448 ! metatarsal bone +is_a: UBERON:0013581 ! metapodium bone 1 +is_a: UBERON:0015037 ! pedal digit 1 metatarsal endochondral element +intersection_of: UBERON:0015037 ! pedal digit 1 metatarsal endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010557 ! pedal digit 1 metatarsal cartilage element +relationship: distally_connected_to UBERON:0004332 ! proximal phalanx of pedal digit 1 + +[Term] +id: UBERON:0003651 +name: metatarsal bone of digit 2 +def: "A metatarsal bone that distally_connected_to a proximal phalanx of pedal digit 2." [OBOL:automatic] +subset: pheno_slim +synonym: "foot digit 2 metatarsal bone" EXACT [OBOL:automatic] +synonym: "hindlimb digit 2 metatarsus" RELATED [EMAPA:19125] +synonym: "metatarsal 2" EXACT [] +synonym: "metatarsal bone digit 2" EXACT [MA:0001370] +synonym: "metatarsal bone of digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "metatarsal bone of foot digit 2" EXACT [OBOL:automatic] +synonym: "metatarsal II" EXACT [AAO:0000926] +synonym: "second metatarsal bone" EXACT [FMA:24503] +synonym: "toe 2 metatarsal" EXACT [] +synonym: "toe 2 metatarsus" EXACT [] +xref: AAO:0000926 +xref: EMAPA:19125 +xref: FMA:24503 +xref: http://linkedlifedata.com/resource/umls/id/C1709000 +xref: http://www.snomedbrowser.com/Codes/Details/182128004 +xref: MA:0001370 +xref: NCIT:C52790 +xref: UMLS:C1709000 {source="ncithesaurus:Metatarsal_Bone_Digit_2"} +is_a: UBERON:0001448 ! metatarsal bone +is_a: UBERON:0013582 ! metapodium bone 2 +is_a: UBERON:0015038 ! pedal digit 2 metatarsal endochondral element +intersection_of: UBERON:0015038 ! pedal digit 2 metatarsal endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010558 ! pedal digit 2 metatarsal cartilage element +relationship: distally_connected_to UBERON:0004333 ! proximal phalanx of pedal digit 2 + +[Term] +id: UBERON:0003652 +name: metatarsal bone of digit 3 +def: "A metatarsal bone that distally_connected_to a proximal phalanx of pedal digit 3[Automatically generated definition]." [http://en.wikipedia.org/wiki/Third_metatarsal_bone, OBOL:automatic] +subset: pheno_slim +synonym: "foot digit 3 metatarsal bone" EXACT [OBOL:automatic] +synonym: "hindlimb cannon bone" NARROW SENSU [https://orcid.org/0000-0002-6601-2165] +synonym: "hindlimb digit 3 metatarsal" RELATED [EMAPA:19127] +synonym: "metatarsal 3" EXACT [] +synonym: "metatarsal bone digit 3" EXACT [MA:0001371] +synonym: "metatarsal bone of digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "metatarsal bone of foot digit 3" EXACT [OBOL:automatic] +synonym: "metatarsal III" EXACT [AAO:0000927] +synonym: "third metatarsal bone" EXACT [FMA:24504] +synonym: "toe 3 metatarsal" EXACT [] +synonym: "toe 3 metatarsus" EXACT [] +xref: AAO:0000927 +xref: EMAPA:19127 +xref: FMA:24504 +xref: http://en.wikipedia.org/wiki/Third_metatarsal_bone +xref: http://linkedlifedata.com/resource/umls/id/C1709001 +xref: http://www.snomedbrowser.com/Codes/Details/182134006 +xref: MA:0001371 +xref: NCIT:C52789 +xref: UMLS:C1709001 {source="ncithesaurus:Metatarsal_Bone_Digit_3"} +is_a: UBERON:0001448 ! metatarsal bone +is_a: UBERON:0013583 ! metapodium bone 3 +is_a: UBERON:0015039 ! pedal digit 3 metatarsal endochondral element +intersection_of: UBERON:0015039 ! pedal digit 3 metatarsal endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010559 ! pedal digit 3 metatarsal cartilage element +relationship: distally_connected_to UBERON:0004334 ! proximal phalanx of pedal digit 3 + +[Term] +id: UBERON:0003653 +name: metatarsal bone of digit 4 +def: "A metatarsal bone that distally_connected_to a proximal phalanx of pedal digit 4." [OBOL:automatic] +subset: pheno_slim +synonym: "foot digit 4 metatarsal bone" EXACT [OBOL:automatic] +synonym: "fourth metatarsal bone" EXACT [FMA:24505] +synonym: "hindlimb digit 4 metatarsus" RELATED [EMAPA:19129] +synonym: "metatarsal 4" EXACT [] +synonym: "metatarsal bone digit 4" EXACT [MA:0001372] +synonym: "metatarsal bone of digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "metatarsal bone of foot digit 4" EXACT [OBOL:automatic] +synonym: "metatarsal IV" EXACT [AAO:0000928] +synonym: "toe 4 metatarsal" EXACT [] +synonym: "toe 4 metatarsus" EXACT [] +xref: AAO:0000928 +xref: EMAPA:19129 +xref: FMA:24505 +xref: http://linkedlifedata.com/resource/umls/id/C1709002 +xref: http://www.snomedbrowser.com/Codes/Details/182139001 +xref: MA:0001372 +xref: NCIT:C52788 +xref: UMLS:C1709002 {source="ncithesaurus:Metatarsal_Bone_Digit_4"} +is_a: UBERON:0001448 ! metatarsal bone +is_a: UBERON:0013584 ! metapodium bone 4 +is_a: UBERON:0015040 ! pedal digit 4 metatarsal endochondral element +intersection_of: UBERON:0015040 ! pedal digit 4 metatarsal endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010560 ! pedal digit 4 metatarsal cartilage element +relationship: distally_connected_to UBERON:0004335 ! proximal phalanx of pedal digit 4 + +[Term] +id: UBERON:0003654 +name: metatarsal bone of digit 5 +def: "A metatarsal bone that distally_connected_to a proximal phalanx of pedal digit 5." [OBOL:automatic] +subset: pheno_slim +synonym: "fifth metatarsal bone" EXACT [FMA:24506] +synonym: "foot digit 5 metatarsal bone" EXACT [OBOL:automatic] +synonym: "hindlimb digit 5 metatarsus" RELATED [EMAPA:19131] +synonym: "metatarsal 5" EXACT [] +synonym: "metatarsal bone digit 5" EXACT [MA:0001373] +synonym: "metatarsal bone of digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "metatarsal bone of foot digit 5" EXACT [OBOL:automatic] +synonym: "metatarsal V" EXACT [AAO:0000929] +synonym: "toe 5 metatarsal" EXACT [] +synonym: "toe 5 metatarsus" EXACT [] +xref: AAO:0000929 +xref: EMAPA:19131 +xref: FMA:24506 +xref: http://linkedlifedata.com/resource/umls/id/C1709003 +xref: http://www.snomedbrowser.com/Codes/Details/182144008 +xref: MA:0001373 +xref: NCIT:C52787 +xref: UMLS:C1709003 {source="ncithesaurus:Metatarsal_Bone_Digit_5"} +is_a: UBERON:0001448 ! metatarsal bone +is_a: UBERON:0013585 ! metapodium bone 5 +is_a: UBERON:0015041 ! pedal digit 5 metatarsal endochondral element +intersection_of: UBERON:0015041 ! pedal digit 5 metatarsal endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010561 ! pedal digit 5 metatarsal cartilage element +relationship: distally_connected_to UBERON:0004336 ! proximal phalanx of pedal digit 5 + +[Term] +id: UBERON:0003655 +name: molar tooth +def: "Molars are the rearmost and most complicated kind of tooth in most mammals." [http://en.wikipedia.org/wiki/Molar_(tooth), https://github.com/obophenotype/uberon/issues/221] +subset: pheno_slim +synonym: "dens molaris" EXACT [http://en.wikipedia.org/wiki/Molar_(tooth)] +synonym: "molar" RELATED [MA:0000350] +synonym: "molaris" EXACT [BTO:0001759] +xref: BTO:0001759 +xref: CALOHA:TS-0637 +xref: EMAPA:32897 +xref: FMA:55638 +xref: http://linkedlifedata.com/resource/umls/id/C0026367 +xref: http://www.snomedbrowser.com/Codes/Details/362115002 +xref: MA:0000350 +xref: MESH:A14.254.860.525 +xref: Molar:(tooth) +xref: NCIT:C33136 +xref: UMLS:C0026367 {source="ncithesaurus:Molar_Tooth"} +is_a: UBERON:0013164 ! molariform tooth +disjoint_from: UBERON:0003674 ! cuspid +disjoint_from: UBERON:0007120 ! premolar tooth + +[Term] +id: UBERON:0003656 +name: mesopodium bone +def: "A bone that is part of a mesopodial skeleton." [https://orcid.org/0000-0002-6601-2165] +synonym: "basipodium bone" EXACT [MA:th] +synonym: "carpal/tarsal bone" EXACT [MA:0000295] +synonym: "mesopod bone" EXACT [] +synonym: "mesopodial bone" EXACT [] +xref: EMAPA:36579 +xref: http://en.wikipedia.org/wiki/Carpus_and_tarsus_of_land_vertebrates +xref: MA:0000295 +is_a: UBERON:0011250 ! autopod bone +is_a: UBERON:0013630 {source="UBERON:cjm"} ! short bone +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0006716 ! mesopodium region +relationship: part_of UBERON:0009878 {notes="https://github.com/obophenotype/uberon/wiki/Skeleton-partonomy-Design-Pattern"} ! mesopodial skeleton + +[Term] +id: UBERON:0003657 +name: limb joint +def: "Any joint that is part of a (free) limb." [https://orcid.org/0000-0002-6601-2165] +comment: Most limb joints are synovial, but a few such as the tibiofibular joints are syndesmoses +subset: grouping_class +synonym: "joint of limb" EXACT [] +synonym: "joint of limb skeletal system" EXACT [OBOL:automatic] +synonym: "skeletal limb joint" EXACT [GO:0036023] +xref: EMAPA:36501 +xref: FMA:321558 +xref: galen:LimbJoint +xref: http://www.snomedbrowser.com/Codes/Details/312683002 +xref: MA:0000691 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: part_of UBERON:0002101 ! limb +relationship: part_of UBERON:0002101 ! limb + +[Term] +id: UBERON:0003658 +name: hip muscle +def: "Any muscle organ that is part of a hip [Automatically generated definition]." [OBOL:automatic] +synonym: "hip muscle organ" EXACT [OBOL:automatic] +synonym: "hip region muscle organ" EXACT [OBOL:automatic] +synonym: "muscle organ of hip" EXACT [OBOL:automatic] +synonym: "muscle organ of hip region" EXACT [OBOL:automatic] +synonym: "muscle organ of regio coxae" EXACT [OBOL:automatic] +synonym: "regio coxae muscle organ" EXACT [OBOL:automatic] +xref: MA:0000657 +is_a: UBERON:0010890 ! pelvic complex muscle +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0001464 ! hip +relationship: part_of UBERON:0001464 ! hip +relationship: part_of UBERON:0004475 {source="prolog"} ! musculature of hip + +[Term] +id: UBERON:0003659 +name: pedal digit muscle +def: "Any muscle organ that is part of a toe [Automatically generated definition]." [OBOL:automatic] +synonym: "digit of foot muscle organ" EXACT [OBOL:automatic] +synonym: "digit of terminal segment of free lower limb muscle organ" EXACT [OBOL:automatic] +synonym: "digitus pedis muscle organ" EXACT [OBOL:automatic] +synonym: "foot digit muscle" EXACT [MA:0000648] +synonym: "foot digit muscle" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit muscle organ" EXACT [OBOL:automatic] +synonym: "hind limb digit muscle" EXACT [OBOL:accepted] +synonym: "muscle organ of digit of foot" EXACT [OBOL:automatic] +synonym: "muscle organ of digit of terminal segment of free lower limb" EXACT [OBOL:automatic] +synonym: "muscle organ of digitus pedis" EXACT [OBOL:automatic] +synonym: "muscle organ of foot digit" EXACT [OBOL:automatic] +synonym: "muscle organ of terminal segment of free lower limb digit" EXACT [OBOL:automatic] +synonym: "muscle organ of toe" EXACT [OBOL:automatic] +synonym: "terminal segment of free lower limb digit muscle organ" EXACT [OBOL:automatic] +synonym: "toe muscle organ" EXACT [OBOL:automatic] +xref: EMAPA:37333 {source="MA:th"} +xref: MA:0000648 +is_a: UBERON:0001498 ! muscle of pes +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0001466 ! pedal digit +relationship: part_of UBERON:0001466 ! pedal digit + +[Term] +id: UBERON:0003660 +name: eyelid muscle +def: "A muscle that attaches to an eyelid." [http://orcid.org/0000-0002-6601-2165] +synonym: "blepharon muscle organ" EXACT [OBOL:automatic] +synonym: "eyelid muscle organ" EXACT [OBOL:automatic] +synonym: "muscle organ of blepharon" EXACT [OBOL:automatic] +synonym: "muscle organ of eyelid" EXACT [OBOL:automatic] +xref: http://linkedlifedata.com/resource/umls/id/C1707990 +xref: MA:0000269 +xref: NCIT:C52803 +xref: UMLS:C1707990 {source="ncithesaurus:Eyelid_Muscle"} +is_a: UBERON:0001630 ! muscle organ +intersection_of: UBERON:0001630 ! muscle organ +intersection_of: attaches_to UBERON:0001711 ! eyelid +relationship: attaches_to UBERON:0001711 ! eyelid + +[Term] +id: UBERON:0003661 +name: limb muscle +def: "Any muscle organ that is part of a limb [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "limb muscle organ" EXACT [OBOL:accepted] +synonym: "limb skeletal muscle" EXACT [OBOL:exploratory] +synonym: "muscle organ of limb" EXACT [OBOL:accepted] +xref: EMAPA:32700 +xref: MA:0000692 +is_a: UBERON:0014892 ! skeletal muscle organ +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0002101 ! limb +relationship: contributes_to_morphology_of UBERON:0001015 ! musculature +relationship: part_of UBERON:0004480 {source="prolog"} ! musculature of limb + +[Term] +id: UBERON:0003662 +name: forelimb muscle +alt_id: UBERON:0005634 +def: "Any muscle organ that is part of a forelimb." [OBOL:automatic] +synonym: "arm muscle system" RELATED [EHDAA2:0000141] +synonym: "fore limb muscle organ" EXACT [OBOL:automatic] +synonym: "forelimb muscle organ" EXACT [OBOL:automatic] +synonym: "free upper limb muscle" EXACT [FMA:37348] +synonym: "muscle of free upper limb" EXACT [FMA:37348] +synonym: "muscle of upper limb" EXACT [FMA:9621] +synonym: "musculature of arm" RELATED PLURAL [] +synonym: "musculature of the arm" RELATED PLURAL [] +synonym: "upper limb skeletal muscle" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "wing muscle" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +synonym: "wing muscle" NARROW SENSU [Geisha:syn, NCBITaxon:8782] +xref: AAO:0000204 +xref: BTO:0000479 +xref: EMAPA:36049 +xref: FMA:37348 +is_a: UBERON:0003661 ! limb muscle +is_a: UBERON:0014794 ! pectoral appendage muscle +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0002102 ! forelimb +relationship: part_of UBERON:0004481 {source="prolog"} ! musculature of upper limb + +[Term] +id: UBERON:0003663 +name: hindlimb muscle +def: "Any muscle organ that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] +subset: efo_slim +synonym: "free lower limb muscle" EXACT [FMA:37368] +synonym: "hind limb muscle organ" EXACT [OBOL:automatic] +synonym: "hindlimb muscle organ" EXACT [OBOL:automatic] +synonym: "inferior member muscle organ" EXACT [OBOL:automatic] +synonym: "lower extremity muscle organ" EXACT [OBOL:automatic] +synonym: "lower limb skeletal muscle" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "muscle of free lower limb" EXACT [FMA:37368] +synonym: "muscle of posterior limb" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "muscle organ of hind limb" EXACT [OBOL:automatic] +synonym: "muscle organ of hindlimb" EXACT [OBOL:automatic] +synonym: "muscle organ of inferior member" EXACT [OBOL:automatic] +synonym: "muscle organ of lower extremity" EXACT [OBOL:automatic] +xref: AAO:0000222 +xref: EFO:0001928 +xref: FMA:37368 +is_a: UBERON:0003661 ! limb muscle +is_a: UBERON:0014795 ! pelvic appendage muscle +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0002103 ! hindlimb +relationship: part_of UBERON:0004482 {source="prolog"} ! musculature of lower limb + +[Term] +id: UBERON:0003664 +name: manual digit muscle +def: "Any muscle organ that is part of a finger [Automatically generated definition]." [OBOL:automatic] +synonym: "digit of hand muscle organ" EXACT [OBOL:automatic] +synonym: "digit of terminal segment of free upper limb muscle organ" EXACT [OBOL:automatic] +synonym: "digitus manus muscle organ" EXACT [OBOL:automatic] +synonym: "finger muscle organ" EXACT [OBOL:automatic] +synonym: "fore limb digit muscle" EXACT [OBOL:accepted] +synonym: "hand digit muscle" EXACT [MA:0000624] +synonym: "hand digit muscle" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit muscle organ" EXACT [OBOL:automatic] +synonym: "muscle organ of digit of hand" EXACT [OBOL:automatic] +synonym: "muscle organ of digit of terminal segment of free upper limb" EXACT [OBOL:automatic] +synonym: "muscle organ of digitus manus" EXACT [OBOL:automatic] +synonym: "muscle organ of finger" EXACT [OBOL:automatic] +synonym: "muscle organ of hand digit" EXACT [OBOL:automatic] +synonym: "muscle organ of terminal segment of free upper limb digit" EXACT [OBOL:automatic] +synonym: "terminal segment of free upper limb digit muscle organ" EXACT [OBOL:automatic] +xref: EMAPA:37331 {source="MA:th"} +xref: MA:0000624 +is_a: UBERON:0001500 ! muscle of manus +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0002389 ! manual digit +relationship: part_of UBERON:0002389 ! manual digit + +[Term] +id: UBERON:0003665 +name: post-anal tail muscle +def: "A muscle organ that attaches to a tail vertebra [Automatically generated definition]." [OBOL:automatic] +synonym: "caudal muscle" EXACT [] +synonym: "muscle organ of post-vent region" EXACT [OBOL:automatic] +synonym: "muscle organ of tail" EXACT [OBOL:automatic] +synonym: "post-vent region muscle organ" EXACT [OBOL:automatic] +synonym: "tail muscle" EXACT [MA:0000699] +synonym: "tail muscle organ" EXACT [OBOL:automatic] +xref: AAO:0000081 +xref: BTO:0001905 +xref: EMAPA:37759 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/113230005 +xref: MA:0000699 +is_a: UBERON:0004518 ! muscle of vertebral column +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: attaches_to UBERON:0001095 ! caudal vertebra +relationship: attaches_to UBERON:0001095 ! caudal vertebra + +[Term] +id: UBERON:0003666 +name: upper jaw molar +def: "A molar tooth that is part of a upper jaw [Automatically generated definition]." [OBOL:automatic] +synonym: "maxillary secondary molar tooth" RELATED [FMA:55720] +synonym: "molar tooth of upper jaw" EXACT [OBOL:automatic] +synonym: "upper jaw molar tooth" EXACT [OBOL:automatic] +synonym: "upper molar" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "upper molar tooth" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "upper permanent molar tooth" RELATED [FMA:55720] +synonym: "upper secondary molar tooth" RELATED [FMA:55720] +xref: EHDAA2:0002125 +xref: EHDAA:8053 +xref: EMAPA:17942 +xref: FMA:55720 +xref: http://linkedlifedata.com/resource/umls/id/C1710580 +xref: MA:0001603 +xref: NCIT:C49795 +xref: UMLS:C1710580 {source="ncithesaurus:Upper_Jaw_Molar"} +is_a: UBERON:0003655 ! molar tooth +is_a: UBERON:0011593 ! maxillary tooth +intersection_of: UBERON:0003655 ! molar tooth +intersection_of: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0003667 +name: lower jaw molar +def: "A molar tooth that is part of a lower jaw [Automatically generated definition]." [OBOL:automatic] +synonym: "lower jaw molar tooth" EXACT [OBOL:automatic] +synonym: "lower molar" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "lower molar tooth" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "molar tooth of lower jaw" EXACT [OBOL:automatic] +xref: EHDAA2:0001025 +xref: EHDAA:8017 +xref: EMAPA:17921 +xref: FMA:290267 +xref: http://linkedlifedata.com/resource/umls/id/C1708756 +xref: MA:0001602 +xref: NCIT:C49584 +xref: UMLS:C1708756 {source="ncithesaurus:Lower_Jaw_Molar"} +is_a: UBERON:0003655 ! molar tooth +is_a: UBERON:0011594 ! dentary tooth +intersection_of: UBERON:0003655 ! molar tooth +intersection_of: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0003668 +name: synovial bursa +def: "A small fluid-filled sac lined by synovial membrane with an inner capillary layer of slimy fluid. It provides a cushion between bones and tendons and/or muscles around a joint. This helps to reduce friction between the bones and allows free movement. Bursae are filled with synovial fluid and are found around most major joints of the body." [http://en.wikipedia.org/wiki/Synovial_bursa] +subset: organ_slim +synonym: "bursa" BROAD [FMA:9692] +synonym: "bursa synovialis" RELATED LATIN [http://en.wikipedia.org/wiki/Synovial_bursa] +xref: FMA:9692 +xref: GAID:252 +xref: galen:Bursa +xref: http://linkedlifedata.com/resource/umls/id/C0006441 +xref: http://www.snomedbrowser.com/Codes/Details/182483003 +xref: MESH:D002061 +xref: NCIT:C33717 +xref: Synovial:bursa +xref: UMLS:C0006441 {source="ncithesaurus:Synovial_Bursa"} +is_a: UBERON:0000062 ! organ +relationship: located_in UBERON:0002018 ! synovial membrane of synovial joint + +[Term] +id: UBERON:0003669 +name: fascia lata +def: "The deep fascia of the thigh. [WP,unvetted]." [http://en.wikipedia.org/wiki/Fascia_lata] +xref: Fascia:lata +xref: FMA:13902 +xref: GAID:117 +xref: http://linkedlifedata.com/resource/umls/id/C0015642 +xref: http://www.snomedbrowser.com/Codes/Details/361911008 +xref: MESH:D005206 +xref: NCIT:C32585 +xref: UMLS:C0015642 {source="ncithesaurus:Fascia_Lata"} +is_a: UBERON:0004266 ! upper leg connective tissue +is_a: UBERON:0011236 ! deep fascia + +[Term] +id: UBERON:0003670 +name: smegma +def: "A combination of exfoliated (shed) epithelial cells, transudated skin oils, and moisture. It occurs in both female and male mammalian genitalia[WP]." [http://en.wikipedia.org/wiki/Smegma] +xref: FMA:19656 +xref: GAID:1170 +xref: http://en.wikipedia.org/wiki/Smegma +xref: http://linkedlifedata.com/resource/umls/id/C0037359 +xref: MESH:D012902 +xref: NCIT:C33574 +xref: UMLS:C0037359 {source="ncithesaurus:Smegma"} +is_a: UBERON:0000456 ! secretion of exocrine gland +relationship: located_in UBERON:0035144 ! preputial space + +[Term] +id: UBERON:0003671 +name: anterior cruciate ligament of knee joint +def: "A major stabilizing ligament in the knee that attaches the surfaces of the femur and tibia." [ncithesaurus:Anterior_Cruciate_Ligament] +synonym: "anterior cruciate ligament" EXACT [FMA:44614] +xref: FMA:44614 +xref: GAID:122 +xref: galen:AnteriorCruciateLigament +xref: http://linkedlifedata.com/resource/umls/id/C0078960 +xref: http://www.snomedbrowser.com/Codes/Details/182443006 +xref: MESH:D016118 +xref: NCIT:C32088 +xref: OpenCyc:Mx4r77KC8RuaEd2f4ADggVfexA +xref: UMLS:C0078960 {source="ncithesaurus:Anterior_Cruciate_Ligament"} +is_a: UBERON:0006659 ! cruciate ligament of knee +disjoint_from: UBERON:0003680 {source="lexical"} ! posterior cruciate ligament of knee joint +relationship: attaches_to UBERON:0000979 ! tibia +relationship: attaches_to UBERON:0000981 ! femur + +[Term] +id: UBERON:0003672 +name: dentition +def: "A collection of teeth arranged in some pattern in the mouth or other part of the body. The arrangement may be a simple row, a collection of rows, or a more elaborate structure, such as a toooth whorl." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "collection of teeth" RELATED [] +synonym: "dentes" EXACT LATIN [FMA:75150, FMA:TA] +synonym: "set of teeth" EXACT [FMA:75150] +synonym: "teeth" EXACT [FMA:75150] +synonym: "teeth" RELATED [] +synonym: "teeth set" EXACT [FMA:75150] +xref: AAO:0000126 +xref: FMA:75150 +xref: GAID:1249 +xref: http://linkedlifedata.com/resource/umls/id/C0011443 +xref: http://www.snomedbrowser.com/Codes/Details/245543004 +xref: MESH:A14.254 +xref: NCIT:C13072 +xref: OpenCyc:Mx4rvVi65JwpEbGdrcN5Y29ycA +xref: UMLS:C0011443 {source="ncithesaurus:Dentition"} +is_a: UBERON:0034925 ! anatomical collection +intersection_of: UBERON:0034925 ! anatomical collection +intersection_of: has_member UBERON:0001091 ! calcareous tooth +relationship: has_member UBERON:0001091 ! calcareous tooth +relationship: part_of UBERON:0010323 ! cranial skeletal system + +[Term] +id: UBERON:0003673 +name: ligamentum flavum +synonym: "flaval ligament" RELATED [GAID:126] +xref: FMA:13423 +xref: GAID:126 +xref: http://linkedlifedata.com/resource/umls/id/C0206327 +xref: http://www.snomedbrowser.com/Codes/Details/244598002 +xref: MESH:D017843 +xref: NCIT:C32986 +xref: UMLS:C0206327 {source="ncithesaurus:Ligamentum_Flavum"} +is_a: UBERON:0000211 ! ligament + +[Term] +id: UBERON:0003674 +name: cuspid +def: "A tooth that is typically long and pointed and bearing a single cusp." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "canine" BROAD [] +synonym: "canine (tooth)" RELATED [http://en.wikipedia.org/wiki/Canine_tooth] +synonym: "canine eminence" RELATED [http://en.wikipedia.org/wiki/Canine_tooth] +synonym: "canine teeth" RELATED PLURAL [http://en.wikipedia.org/wiki/Canine_tooth] +synonym: "canine teeth" RELATED PLURAL [GAID:1262] +synonym: "canine tooth" EXACT [FMA:55636] +synonym: "caniniform tooth" NARROW [] +synonym: "cuspis dentis" EXACT LATIN [FMA:55636, FMA:TA] +synonym: "dens caninus" RELATED [http://en.wikipedia.org/wiki/Canine_tooth] +synonym: "dentes canini" RELATED LATIN [http://en.wikipedia.org/wiki/Canine_tooth] +synonym: "dogtooth (anatomy)" RELATED [http://en.wikipedia.org/wiki/Canine_tooth] +synonym: "eye teeth" RELATED PLURAL [http://en.wikipedia.org/wiki/Canine_tooth] +synonym: "eye tooth" RELATED [http://en.wikipedia.org/wiki/Canine_tooth] +synonym: "eyeteeth" RELATED PLURAL [http://en.wikipedia.org/wiki/Canine_tooth] +synonym: "eyetooth" RELATED [http://en.wikipedia.org/wiki/Canine_tooth] +synonym: "fang" RELATED [http://en.wikipedia.org/wiki/Canine_tooth] +xref: Canine:tooth +xref: FMA:55636 +xref: GAID:1262 +xref: http://linkedlifedata.com/resource/umls/id/C0010482 +xref: http://www.snomedbrowser.com/Codes/Details/420817000 +xref: http://www.snomedbrowser.com/Codes/Details/88719004 +xref: MESH:A14.254.860.200 +xref: NCIT:C32258 +xref: UMLS:C0010482 {source="ncithesaurus:Canine_Tooth"} +is_a: UBERON:0001091 ! calcareous tooth +disjoint_from: UBERON:0007120 ! premolar tooth +relationship: has_part UBERON:0006844 {count="1", editor_note="cardinality not allowed with transitivity in OWL"} ! cusp of tooth + +[Term] +id: UBERON:0003675 +name: tooth crown +def: "The portion of the tooth covered by enamel." [ncithesaurus:Corona_Dentis] +synonym: "anatomical crown" EXACT [FMA:55623] +synonym: "corona dentis" EXACT LATIN [ncithesaurus:Corona_Dentis] +synonym: "crown" RELATED [] +synonym: "crown of tooth" EXACT [FMA:55623] +synonym: "tooth crown" EXACT [FMA:55623] +xref: FMA:55623 +xref: GAID:1275 +xref: http://linkedlifedata.com/resource/umls/id/C0226993 +xref: http://www.snomedbrowser.com/Codes/Details/362106009 +xref: MESH:A14.254.900.710 +xref: NCIT:C32375 +xref: UMLS:C0226993 {source="ncithesaurus:Corona_Dentis"} +is_a: UBERON:0000063 ! organ subunit +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001091 ! calcareous tooth + +[Term] +id: UBERON:0003676 +name: patellar ligament +def: "The central portion of the common tendon of the quadriceps femoris. It is attached to the apex of the PATELLA and to the lower part of the tubercle of the TIBIA." [http://en.wikipedia.org/wiki/Patellar_ligament, MESH:A02.513.514.475] +synonym: "central band of tendon of quadriceps femoris" EXACT [FMA:44581] +synonym: "ligamentum patella" EXACT [FMA:44581] +synonym: "patellar tendon" RELATED [] +xref: EMAPA:18509 +xref: FMA:44581 +xref: GAID:128 +xref: galen:LigamentumPatellae +xref: http://linkedlifedata.com/resource/umls/id/C0206332 +xref: http://www.snomedbrowser.com/Codes/Details/244639004 +xref: MESH:D017847 +xref: NCIT:C33283 +xref: Patellar:ligament +xref: UMLS:C0206332 {source="ncithesaurus:Patellar_Ligament"} +is_a: UBERON:0011088 ! ligament of knee joint +relationship: connects UBERON:0000979 ! tibia +relationship: connects UBERON:0002446 ! patella + +[Term] +id: UBERON:0003677 +name: tooth root +def: "The part of a tooth that is implanted in the gum; the root is normally located below the neck of the tooth, covered by cementum rather than enamel, and attached by the periodontal ligament to the alveolar bone" [MP:0011165] +subset: pheno_slim +synonym: "radix corona" EXACT [FMA:55624] +synonym: "root of tooth" EXACT [FMA:55624] +synonym: "tooth root" EXACT [FMA:55624] +xref: EMAPA:37975 {source="MA:th"} +xref: FMA:55624 +xref: GAID:1280 +xref: http://www.snomedbrowser.com/Codes/Details/245728004 +xref: MESH:A14.254.900.750 +is_a: UBERON:0000063 ! organ subunit +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: attaches_to UBERON:0001091 ! calcareous tooth +relationship: part_of UBERON:0001091 ! calcareous tooth + +[Term] +id: UBERON:0003678 +name: tooth apex +synonym: "apex of tooth" EXACT [FMA:63000] +synonym: "apical foramen" RELATED [GAID:1281] +synonym: "tooth apex" EXACT [FMA:63000] +synonym: "tooth apice" RELATED [GAID:1281] +xref: FMA:63000 +xref: GAID:1281 +xref: MESH:A14.254.900.750.700 +is_a: UBERON:0000015 ! non-material anatomical boundary +relationship: part_of UBERON:0001091 ! calcareous tooth + +[Term] +id: UBERON:0003679 +name: mouth floor +def: "The ventral area of the mouth. In organisms with a tongue, this is the area under the ventral surface of the tongue[ncit, modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Floor_of_the_Mouth] +subset: efo_slim +subset: pheno_slim +synonym: "floor of mouth" EXACT [FMA:86592] +synonym: "floor of oval cavity" EXACT [] +synonym: "floor of the oval cavity" EXACT [] +synonym: "sublingual region" NARROW [GAID:1283] +xref: CALOHA:TS-2207 +xref: EFO:0001923 +xref: EMAPA:37911 {source="MA:th"} +xref: FMA:86592 +xref: GAID:1283 +xref: http://linkedlifedata.com/resource/umls/id/C0026638 +xref: http://www.snomedbrowser.com/Codes/Details/245786002 +xref: MESH:D009060 +xref: NCIT:C54187 +xref: UMLS:C0026638 {source="ncithesaurus:Floor_of_the_Mouth"} +is_a: UBERON:0001444 ! subdivision of head +relationship: part_of UBERON:0000165 ! mouth + +[Term] +id: UBERON:0003680 +name: posterior cruciate ligament of knee joint +synonym: "posterior cruciate ligament" EXACT [FMA:44617] +xref: FMA:44617 +xref: GAID:129 +xref: galen:PosteriorCruciateLigament +xref: http://linkedlifedata.com/resource/umls/id/C0080039 +xref: http://www.snomedbrowser.com/Codes/Details/182445004 +xref: MESH:D016119 +xref: NCIT:C33359 +xref: UMLS:C0080039 {source="ncithesaurus:Posterior_Cruciate_Ligament"} +is_a: UBERON:0006659 ! cruciate ligament of knee + +[Term] +id: UBERON:0003681 +name: masticatory muscle +def: "In humans: Muscles arising in the zygomatic arch that close the jaw. Their nerve supply is masseteric from the mandibular division of the trigeminal nerve. (From Stedman, 25th ed)" [http://en.wikipedia.org/wiki/Muscles_of_mastication, MESH:A02.633.567.600] +subset: pheno_slim +synonym: "jaw muscle" RELATED [] +synonym: "muscle of mastication" EXACT [] +synonym: "musculi masticatorii" RELATED [http://en.wikipedia.org/wiki/Muscles_of_mastication] +synonym: "musculi masticatorii" RELATED LATIN [http://en.wikipedia.org/wiki/Muscles_of_mastication] +xref: FMA:74060 +xref: GAID:145 +xref: http://en.wikipedia.org/wiki/Muscles_of_mastication +xref: http://linkedlifedata.com/resource/umls/id/C0024890 +xref: http://www.snomedbrowser.com/Codes/Details/244769003 +xref: MA:0003115 +xref: MESH:D008410 +xref: NCIT:C33147 +xref: UMLS:C0024890 {source="ncithesaurus:Muscle_of_the_Mastication"} +is_a: UBERON:0011648 ! jaw muscle +is_a: UBERON:0018544 ! trigeminal nerve muscle +relationship: innervated_by UBERON:0000375 {source="dbpedia"} ! mandibular nerve + +[Term] +id: UBERON:0003682 +name: palatal muscle +def: "The muscles of the palate are the glossopalatine, palatoglossus, levator palati(ni), musculus uvulae, palatopharyngeus, and tensor palati(ni)." [http://en.wikipedia.org/wiki/Muscles_of_soft_palate_and_fauces, MESH:A02.633.567.750] +subset: pheno_slim +synonym: "muscle of palate" EXACT [FMA:46726] +synonym: "musculi palati mollis et faucium" EXACT [] +synonym: "musculi palati mollis et faucium" RELATED LATIN [http://en.wikipedia.org/wiki/Muscles_of_soft_palate_and_fauces] +synonym: "palatal muscle" EXACT [FMA:46726] +synonym: "palate muscle" EXACT [FMA:46726] +synonym: "palatine muscle" EXACT [FMA:46726] +xref: EMAPA:37929 {source="MA:th"} +xref: FMA:46726 +xref: GAID:151 +xref: http://en.wikipedia.org/wiki/Muscles_of_soft_palate_and_fauces +xref: http://linkedlifedata.com/resource/umls/id/C0030213 +xref: http://www.snomedbrowser.com/Codes/Details/244794002 +xref: http://www.snomedbrowser.com/Codes/Details/73711005 +xref: MESH:D010156 +xref: NCIT:C33247 +xref: UMLS:C0030213 {source="ncithesaurus:Palatal_Muscle"} +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010959 ! craniocervical muscle +is_a: UBERON:0013765 ! digestive system element +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0001733 ! soft palate +relationship: part_of UBERON:0001733 ! soft palate + +[Term] +id: UBERON:0003683 +name: rotator cuff +def: "A group of muscles and their tendons that act to stabilize the shoulder. The four muscles of the rotator cuff are over half of the seven scapulohumeral muscles" [http://en.wikipedia.org/wiki/Rotator_cuff] +synonym: "musculotendinous cuff" EXACT [FMA:37018] +synonym: "rotator cuff" EXACT [FMA:37018] +synonym: "tendinous cuff" EXACT [FMA:37018] +xref: FMA:37018 +xref: GAID:160 +xref: http://linkedlifedata.com/resource/umls/id/C0085515 +xref: MESH:D017006 +xref: NCIT:C33497 +xref: Rotator:cuff +xref: UMLS:C0085515 {source="ncithesaurus:Rotator_Cuff"} +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0001467 ! shoulder + +[Term] +id: UBERON:0003684 +name: abdominal cavity +def: "The part of the ventral body cavity that is within the abdomen proper (excluding the pelvic cavity)." [UBERON:cjm] +subset: efo_slim +synonym: "cavitas abdominis" RELATED LATIN [http://en.wikipedia.org/wiki/Abdominal_cavity] +synonym: "cavitas abdominis" RELATED [GAID:17] +synonym: "cavity of abdominal compartment" EXACT [FMA:12266] +synonym: "cavity of compartment of abdomen" EXACT [FMA:12266] +synonym: "space of abdominal compartment" EXACT [FMA:12266] +xref: Abdominal:cavity +xref: EFO:0000213 +xref: EMAPA:36505 +xref: FMA:12266 +xref: GAID:17 +xref: galen:AbdominalCavity +xref: http://linkedlifedata.com/resource/umls/id/C0230168 +xref: http://www.snomedbrowser.com/Codes/Details/361294009 +xref: MA:0003057 +xref: MESH:A01.047.025 +xref: NCIT:C12664 +xref: OpenCyc:Mx4rvZR1TJwpEbGdrcN5Y29ycA +xref: UMLS:C0230168 {source="ncithesaurus:Abdominal_Cavity"} +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0000916 ! abdomen +intersection_of: part_of UBERON:0002323 ! coelemic cavity lumen +relationship: luminal_space_of UBERON:0000916 ! abdomen +relationship: part_of UBERON:0000916 ! abdomen +relationship: part_of UBERON:0035819 ! abdominopelvic cavity + +[Term] +id: UBERON:0003685 +name: cranial suture +def: "Fibrous joint in which the articulating bones or cartilages of the skull are connected by sutural ligaments (scant amount of collagenous dense connective tissue). Examples: sagittal suture, frontal suture." [FMA:71385, http://en.wikipedia.org/wiki/Suture_(joint), ISBN:3110148986] +subset: pheno_slim +subset: uberon_slim +synonym: "cranium suture" EXACT [OBOL:automatic] +synonym: "sutura" BROAD [] +synonym: "suture" BROAD [FMA:71385] +synonym: "suture joint of skull" EXACT [] +synonym: "suture of cranium" EXACT [OBOL:automatic] +xref: EMAPA:35263 +xref: FMA:7493 +xref: GAID:211 +xref: http://www.snomedbrowser.com/Codes/Details/244509003 +xref: MA:0001475 +xref: MESH:D003393 +xref: Suture:(joint) +is_a: UBERON:0009198 {source="GO"} ! craniofacial suture +intersection_of: UBERON:0002209 ! fibrous joint +intersection_of: part_of UBERON:0003128 ! cranium +relationship: contributes_to_morphology_of UBERON:0003128 ! cranium +relationship: developmentally_induced_by UBERON:0002363 {source="http://www.ncbi.nlm.nih.gov/pubmed/16496288"} ! dura mater +relationship: fma_set_term FMA:71385 +relationship: part_of UBERON:0003128 ! cranium + +[Term] +id: UBERON:0003686 +name: tooth socket +def: "Dental alveolus (plural, alveoli) are sockets in the jaws in which the roots of teeth are held in the alveolar process of maxilla with the periodontal ligament. The lay term for dental alveoli is tooth sockets. A joint that connect the roots of the teeth and the alveolus are called gomphosis (plural gomphoses). In mammals, tooth sockets are found in the maxilla and the mandible. [WP,unvetted]." [http://en.wikipedia.org/wiki/Dental_alveolus] +synonym: "alveolus dentali" RELATED [GAID:217] +synonym: "alveolus dentalis" RELATED [GAID:217] +synonym: "alveolus dentalis" RELATED LATIN [http://en.wikipedia.org/wiki/Dental_alveolus] +synonym: "dental alveolus" EXACT [FMA:57490] +synonym: "dental alveolus" RELATED [GAID:217] +xref: Dental:alveolus +xref: FMA:57490 +xref: GAID:217 +xref: http://linkedlifedata.com/resource/umls/id/C0227130 +xref: http://www.snomedbrowser.com/Codes/Details/288323008 +xref: MESH:D020390 +xref: NCIT:C94543 +xref: UMLS:C0227130 {source="ncithesaurus:Tooth_Socket"} +is_a: UBERON:0002553 ! anatomical cavity +relationship: part_of UBERON:0004103 {source="MESH-modified"} ! alveolar ridge + +[Term] +id: UBERON:0003687 +name: foramen magnum +def: "In anatomy, in the occipital bone, the foramen magnum is one of the several oval or circular apertures in the base of the skull, through which the medulla oblongata (an extension of the spinal cord) enters and exits the skull vault. Apart from the transmission of the medulla oblongata and its membranes, the foramen magnum transmits the Spinal Accessory nerve, vertebral arteries, the anterior and posterior spinal arteries, the membrana tectoria and alar ligaments. [WP,unvetted]." [http://en.wikipedia.org/wiki/Foramen_magnum] +comment: Design pattern notes: check whether this fits the foramen design pattern +subset: pheno_slim +subset: vertebrate_core +xref: AAO:0010826 +xref: EMAPA:37868 {source="MA:th"} +xref: FMA:75306 +xref: Foramen:magnum +xref: GAID:228 +xref: http://linkedlifedata.com/resource/umls/id/C0016519 +xref: http://www.snomedbrowser.com/Codes/Details/244679008 +xref: MESH:D005539 +xref: NCIT:C12495 +xref: OpenCyc:Mx4rwOm-FpwpEbGdrcN5Y29ycA +xref: TAO:0002045 +xref: UMLS:C0016519 {source="ncithesaurus:Foramen_Magnum"} +xref: ZFA:0005387 +is_a: UBERON:0013685 ! foramen of skull +intersection_of: UBERON:0013685 ! foramen of skull +intersection_of: conduit_for UBERON:0001896 ! medulla oblongata +relationship: conduit_for UBERON:0001896 ! medulla oblongata +relationship: located_in UBERON:0001676 ! occipital bone + +[Term] +id: UBERON:0003688 +name: omentum +def: "A fold of peritoneum originating at the stomach and supporting the viscera." [ncithesaurus:Omentum] +xref: CALOHA:TS-2004 +xref: EV:0100084 +xref: FMA:14650 +xref: GAID:23 +xref: galen:Omentum +xref: http://linkedlifedata.com/resource/umls/id/C0028977 +xref: http://www.snomedbrowser.com/Codes/Details/362710002 +xref: MESH:A01.047.025.600.573 +xref: NCIT:C33209 +xref: UMLS:C0028977 {source="ncithesaurus:Omentum"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0034944 ! zone of organ +relationship: part_of UBERON:0001178 ! visceral peritoneum + +[Term] +id: UBERON:0003689 +name: sella turcica +def: "The sella turcica is a saddle-shaped depression in the sphenoid bone at the base of the human skull. [WP,unvetted]." [http://en.wikipedia.org/wiki/Sella_turcica] +subset: pheno_slim +synonym: "suprasellar" RELATED [http://en.wikipedia.org/wiki/Sella_turcica] +synonym: "Turkey Chair" RELATED LATIN [http://en.wikipedia.org/wiki/Sella_turcica] +synonym: "turkish saddle" RELATED [http://en.wikipedia.org/wiki/Sella_turcica] +xref: CALOHA:TS-2342 +xref: FMA:54709 +xref: GAID:231 +xref: http://linkedlifedata.com/resource/umls/id/C0036609 +xref: http://www.snomedbrowser.com/Codes/Details/368554001 +xref: MESH:D012658 +xref: NCIT:C12497 +xref: Sella:turcica +xref: UMLS:C0036609 {source="ncithesaurus:Sella_Turcica"} +is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0009639 {source="FMA"} ! body of sphenoid + +[Term] +id: UBERON:0003690 +name: fused sacrum +def: "A collection of sacral vertebrae in the sacral region that are fused and part of the bony pelvis." [https://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +synonym: "os sacrum" RELATED LATIN [http://en.wikipedia.org/wiki/Sacrum] +synonym: "os sacrum [vertebrae sacrales I - V]" EXACT LATIN [FMA:16202, FMA:TA] +synonym: "sacral bone" RELATED [FMA:16202] +synonym: "sacrum" EXACT HUMAN_PREFERRED [FMA:16202] +synonym: "sacrum [sacral vertebrae I - V]" EXACT [FMA:16202] +synonym: "sacrum [sacral vertebrae I-V]" EXACT [FMA:16202] +xref: CALOHA:TS-2201 +xref: EFO:0003071 +xref: FMA:16202 +xref: GAID:241 +xref: galen:Sacrum +xref: http://en.wikipedia.org/wiki/Sacrum +xref: http://www.snomedbrowser.com/Codes/Details/264186006 +xref: MESH:D012447 +xref: NCIT:C33508 +xref: OpenCyc:Mx4rvmBKnJwpEbGdrcN5Y29ycA +is_a: UBERON:0003828 ! abdominal segment bone +is_a: UBERON:0004247 ! bone of dorsum +is_a: UBERON:0005179 ! pelvic region element +is_a: UBERON:0006075 ! sacral region of vertebral column +is_a: UBERON:0008001 {source="FMA"} ! irregular bone +intersection_of: UBERON:0006075 ! sacral region of vertebral column +intersection_of: has_fused_element UBERON:0001094 ! sacral vertebra +intersection_of: part_of UBERON:0001270 ! bony pelvis +relationship: has_fused_element UBERON:0001094 ! sacral vertebra +relationship: part_of UBERON:0001270 {source="FMA"} ! bony pelvis + +[Term] +id: UBERON:0003691 +name: epidural space +def: "The outermost part of the spinal canal. It is the space within the canal (formed by the surrounding vertebrae) lying outside the dura mater." [http://en.wikipedia.org/wiki/Epidural_space] +synonym: "cavum epidurale" EXACT LATIN [http://en.wikipedia.org/wiki/Epidural_space] +synonym: "cavum extradurale" EXACT LATIN [http://en.wikipedia.org/wiki/Epidural_space] +synonym: "epidural cavity" RELATED [http://en.wikipedia.org/wiki/Epidural_space] +synonym: "extradural space" EXACT [FMA:71228] +synonym: "spatium epidurale" EXACT LATIN [http://en.wikipedia.org/wiki/Epidural_space] +synonym: "spatium extradurale" EXACT LATIN [FMA:71228, FMA:TA] +xref: Epidural:space +xref: FMA:71228 +xref: GAID:243 +xref: http://www.snomedbrowser.com/Codes/Details/281866004 +xref: MESH:D004824 +is_a: UBERON:0010276 ! space in vertebral column +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: part_of UBERON:0006692 ! vertebral canal +intersection_of: surrounds UBERON:0002363 ! dura mater +relationship: part_of UBERON:0006692 ! vertebral canal +relationship: surrounds UBERON:0002363 ! dura mater + +[Term] +id: UBERON:0003692 +name: acromioclavicular joint +def: "Any joint connecting the acromonion of the scapula and clavicle." [http://en.wikipedia.org/wiki/Acromioclavicular_joint, http://orcid.org/0000-0002-6601-2165] +synonym: "acromioclavicular articulation" RELATED [http://en.wikipedia.org/wiki/Acromioclavicular_joint] +synonym: "articulatio acromioclavicularis" RELATED LATIN [http://en.wikipedia.org/wiki/Acromioclavicular_joint] +synonym: "scapuloclavicular articulation" RELATED [http://en.wikipedia.org/wiki/Acromioclavicular_joint] +xref: Acromioclavicular:joint +xref: FMA:25898 +xref: GAID:249 +xref: http://linkedlifedata.com/resource/umls/id/C0001208 +xref: http://www.snomedbrowser.com/Codes/Details/182166001 +xref: MESH:D000173 +xref: NCIT:C32047 +xref: OpenCyc:Mx4rwHhmSJwpEbGdrcN5Y29ycA +xref: UMLS:C0001208 {source="ncithesaurus:Acromioclavicular_Joint"} +is_a: UBERON:0011108 {source="FMA"} ! synovial joint of pectoral girdle +is_a: UBERON:0016884 ! shoulder joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001105 ! clavicle bone +intersection_of: connects UBERON:0002497 ! acromion +relationship: connects UBERON:0001105 ! clavicle bone +relationship: connects UBERON:0002497 ! acromion + +[Term] +id: UBERON:0003693 +name: retroperitoneal space +def: "Anatomical space in the abdominal cavity behind (retro) the peritoneum. It has no specific delineating anatomical structures. Organs are retroperitoneal if they only have peritoneum on their anterior side." [http://en.wikipedia.org/wiki/Retroperitoneal_space] +subset: efo_slim +subset: pheno_slim +synonym: "retroperitoneum" EXACT [FMA:15080] +synonym: "spatium retroperitoneale" EXACT LATIN [http://en.wikipedia.org/wiki/Retroperitoneum] +xref: CALOHA:TS-2337 +xref: EFO:0002806 +xref: FMA:15080 +xref: GAID:25 +xref: http://linkedlifedata.com/resource/umls/id/C0035359 +xref: http://www.snomedbrowser.com/Codes/Details/243983004 +xref: MESH:A01.047.025.750 +xref: NCIT:C12298 +xref: Retroperitoneal:space +xref: UMLS:C0035359 {source="ncithesaurus:Retroperitoneum"} +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0003684 ! abdominal cavity + +[Term] +id: UBERON:0003694 +name: atlanto-axial joint +def: "The Atlanto-axial joint is of a complicated nature, comprising no fewer than four distinct joints. There is a pivot articulation between the odontoid process of the axis and the ring formed by the anterior arch and the transverse ligament of the atlas." [http://en.wikipedia.org/wiki/Atlanto-axial_joint] +subset: pheno_slim +synonym: "articulatio atlantoaxialis" RELATED [http://en.wikipedia.org/wiki/Atlanto-axial_joint] +synonym: "articulatio atlantoepistrophica" RELATED [http://en.wikipedia.org/wiki/Atlanto-axial_joint] +synonym: "atlanto axial joint" EXACT [GAID:250] +synonym: "atlantoaxial" RELATED [http://en.wikipedia.org/wiki/Atlanto-axial_joint] +synonym: "atlantoaxial joint" EXACT [GAID:250] +synonym: "lateral atlanto-axial joint" RELATED [http://en.wikipedia.org/wiki/Atlanto-axial_joint] +synonym: "median atlanto-axial joint" RELATED [http://en.wikipedia.org/wiki/Atlanto-axial_joint] +xref: Atlanto-axial:joint +xref: FMA:25524 +xref: GAID:250 +xref: http://linkedlifedata.com/resource/umls/id/C0004168 +xref: http://www.snomedbrowser.com/Codes/Details/361832004 +xref: MESH:D001268 +xref: NCIT:C32157 +xref: OpenCyc:Mx4rwUUIHpwpEbGdrcN5Y29ycA +xref: UMLS:C0004168 {source="ncithesaurus:Atlanto-axial_Joint"} +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001092 ! vertebral bone 1 +intersection_of: connects UBERON:0001093 ! vertebral bone 2 +relationship: connects UBERON:0001092 ! vertebral bone 1 +relationship: connects UBERON:0001093 ! vertebral bone 2 +relationship: part_of UBERON:0011138 ! postcranial axial skeletal system + +[Term] +id: UBERON:0003695 +name: metacarpophalangeal joint +def: "The metacarpophalangeal joints (MCP) are of the condyloid kind, formed by the reception of the rounded heads of the metacarpal bones into shallow cavities on the proximal ends of the first phalanges, with the exception of that of the thumb, which presents more of the characters of a ginglymoid joint. Arthritis of the MCP is a distinguishing feature of Rheumatoid Arthritis, as opposed to the distal interphalangeal joint in osteoarthritis. [WP,unvetted]." [http://en.wikipedia.org/wiki/Metacarpophalangeal_joint] +subset: pheno_slim +synonym: "articulationes metacarpophalangeae" RELATED LATIN [http://en.wikipedia.org/wiki/Metacarpophalangeal_joint] +synonym: "carpometacarpophalangeal joint" NARROW SENSU [NCBITaxon:8782] +synonym: "metacarpal joint" BROAD [FMA:35246] +synonym: "metacarpal phalangeal joint" RELATED [HP:0004294] +synonym: "metacarpo-phalangeal joint" EXACT [MA:0000453] +synonym: "MP joint" EXACT [FMA:35246] +xref: EMAPA:19302 +xref: FMA:35246 +xref: GAID:255 +xref: galen:MetacarpoPhalangealJoint +xref: http://linkedlifedata.com/resource/umls/id/C0025525 +xref: http://www.snomedbrowser.com/Codes/Details/280995004 +xref: http://www.snomedbrowser.com/Codes/Details/370651001 +xref: MA:0000453 +xref: MESH:A02.835.583.345.512 +xref: Metacarpophalangeal:joint +xref: NCIT:C33106 +xref: OpenCyc:Mx4rwNt8wJwpEbGdrcN5Y29ycA +xref: UMLS:C0025525 {source="ncithesaurus:Metacarpophalangeal_Joint"} +is_a: UBERON:0001489 ! manus joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0002234 ! proximal phalanx of manus +intersection_of: connects UBERON:0002374 ! metacarpal bone +relationship: connects UBERON:0002234 ! proximal phalanx of manus +relationship: connects UBERON:0002374 ! metacarpal bone +relationship: fma_set_term FMA:71364 +relationship: part_of UBERON:0002389 ! manual digit + +[Term] +id: UBERON:0003696 +name: metatarsophalangeal joint +alt_id: http://purl.bioontology.org/ontology/provisional/1ddd2e2d-2ace-4c87-8ec6-d3b5730b3e7c +alt_id: http://purl.bioontology.org/ontology/provisional/8378426c-67ca-4bab-a9cf-531093b9b95e +def: "The metatarsophalangeal articulations are the joints between the metatarsal bones of the foot and the proximal bones of the toes . They are condyloid joints meaning an elliptical or rounded surface (of the metatarsal bones) come close to the shallow cavities (of the proximal phalanges). The ligaments are the plantar and two collateral." [http://en.wikipedia.org/wiki/Metatarsophalangeal_articulations] +synonym: "articulationes metatarsophalangeae" RELATED LATIN [http://en.wikipedia.org/wiki/Metatarsophalangeal_articulations] +synonym: "metatarsal joint" RELATED [FMA:35222] +synonym: "metatarsal-phalangeal joint" EXACT [PHENOSCAPE:ad] +synonym: "metatarsalphalangeal joint" RELATED [http://en.wikipedia.org/wiki/Metatarsophalangeal_articulations] +synonym: "metatarsophalangeal" RELATED [http://en.wikipedia.org/wiki/Metatarsophalangeal_articulations] +synonym: "metatarsophalangeal articulation" RELATED [http://en.wikipedia.org/wiki/Metatarsophalangeal_articulations] +xref: FMA:35222 +xref: GAID:258 +xref: galen:MetatarsoPhalangealJoint +xref: http://linkedlifedata.com/resource/umls/id/C0025589 +xref: http://www.snomedbrowser.com/Codes/Details/239747005 +xref: http://www.snomedbrowser.com/Codes/Details/302535003 +xref: http://www.snomedbrowser.com/Codes/Details/370752004 +xref: MESH:D008683 +xref: Metatarsophalangeal:articulations +xref: NCIT:C33108 +xref: OpenCyc:Mx4rwCtS0pwpEbGdrcN5Y29ycA +xref: UMLS:C0025589 {source="ncithesaurus:Metatarsophalangeal_Joint"} +is_a: UBERON:0001487 ! pes joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001448 ! metatarsal bone +intersection_of: connects UBERON:0003867 ! distal phalanx of pes +relationship: connects UBERON:0001448 ! metatarsal bone +relationship: connects UBERON:0003867 ! distal phalanx of pes +relationship: part_of UBERON:0001466 ! pedal digit + +[Term] +id: UBERON:0003697 +name: abdominal wall +def: "The tissues that surround the organs that are present within the abdominal cavity. The abdominal wall tissue is composed of layers of fat, parietal peritoneum, fascia, and muscles." [ncithesaurus:Abdominal_Wall] +subset: pheno_slim +synonym: "abdominal wall proper" RELATED [FMA:10429] +synonym: "layers of the abdominal wall" RELATED [http://en.wikipedia.org/wiki/Abdominal_wall] +synonym: "paries abdominalis" EXACT [http://en.wikipedia.org/wiki/Abdominal_wall] +synonym: "paries abdominalis" RELATED LATIN [http://en.wikipedia.org/wiki/Abdominal_wall] +synonym: "wall of abdomen" EXACT [FMA:259054] +synonym: "wall of abdomen proper" EXACT [FMA:10429] +xref: Abdominal:wall +xref: EMAPA:37064 {source="MA:th"} +xref: FMA:10429 +xref: FMA:259054 +xref: GAID:26 +xref: http://linkedlifedata.com/resource/umls/id/C0836916 +xref: http://www.snomedbrowser.com/Codes/Details/181613000 +xref: MESH:A01.047.050 +xref: NCIT:C77608 +xref: UMLS:C0836916 {source="ncithesaurus:Abdominal_Wall"} +is_a: UBERON:0000060 ! anatomical wall +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0000916 ! abdomen +relationship: part_of UBERON:0000916 ! abdomen + +[Term] +id: UBERON:0003698 +name: subtalar joint +def: "A joint of the pes that connects the talus and the calcaneus." [http://en.wikipedia.org/wiki/Subtalar_joint, https://orcid.org/0000-0002-6601-2165] +synonym: "articulatio subtalaris" EXACT LATIN [FMA:35198, FMA:TA] +synonym: "articulatio talocalcanea" EXACT LATIN [FMA:35198, FMA:TA] +synonym: "subtalar joint" EXACT [FMA:35198] +synonym: "talocalcaneal articulation" RELATED [http://en.wikipedia.org/wiki/Subtalar_joint] +synonym: "talocalcaneal joint" RELATED [GAID:260] +xref: FMA:35198 +xref: GAID:260 +xref: http://linkedlifedata.com/resource/umls/id/C0038593 +xref: http://www.snomedbrowser.com/Codes/Details/182213007 +xref: MESH:D013380 +xref: NCIT:C33653 +xref: Subtalar:joint +xref: UMLS:C0038593 {source="ncithesaurus:Subtalar_Joint"} +is_a: UBERON:0008447 {source="MESH"} ! intertarsal joint +intersection_of: UBERON:0002217 ! synovial joint +intersection_of: connects UBERON:0001450 ! calcaneus +intersection_of: connects UBERON:0002395 ! talus +relationship: connects UBERON:0001450 ! calcaneus +relationship: connects UBERON:0002395 ! talus + +[Term] +id: UBERON:0003699 +name: pubic symphysis +def: "The firm fibrocartilaginous joint in the median plane between the two opposing surfaces of the pubic bones, which are united by an interpubic disc of fibrocartilage as well as the superior and arcuate pubic ligaments." [http://en.wikipedia.org/wiki/Pubic_symphysis, MP:0009575] +subset: organ_slim +subset: pheno_slim +synonym: "interpubic articulation" RELATED [http://en.wikipedia.org/wiki/Pubic_symphysis] +synonym: "symphisis pubis" RELATED [http://en.wikipedia.org/wiki/Pubic_symphysis] +synonym: "symphysis pubica" RELATED LATIN [http://en.wikipedia.org/wiki/Pubic_symphysis] +synonym: "symphysis pubis" EXACT [FMA:16950] +synonym: "symphysis pubis" RELATED LATIN [http://en.wikipedia.org/wiki/Pubic_symphysis] +synonym: "symphysis pubis" RELATED [http://en.wikipedia.org/wiki/Pubic_symphysis] +xref: AAO:0000769 +xref: EMAPA:37940 {source="MA:th"} +xref: FMA:16950 +xref: GAID:267 +xref: http://linkedlifedata.com/resource/umls/id/C0034015 +xref: http://www.snomedbrowser.com/Codes/Details/182200001 +xref: MESH:D011631 +xref: NCIT:C33425 +xref: OpenCyc:Mx4rwGw9npwpEbGdrcN5Y29ycA +xref: Pubic:symphysis +xref: UMLS:C0034015 {source="ncithesaurus:Pubic_Symphisis"} +is_a: UBERON:0002216 {source="FMA"} ! symphysis +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0008114 ! joint of girdle +relationship: connects UBERON:0011090 ! skeleton of right pelvic girdle +relationship: connects UBERON:0011091 ! skeleton of left pelvic girdle +relationship: contributes_to_morphology_of UBERON:0001275 ! pubis +relationship: part_of UBERON:0001275 ! pubis + +[Term] +id: UBERON:0003700 +name: temporomandibular joint +def: "A synovial joint of the jaw that connects the mandible to the temporal bone." [http://en.wikipedia.org/wiki/Temporomandibular_joint] +comment: There are two TMJs, one on either side, working in unison. The unique feature of the TMJs is the articular disc. The disc is composed of fibrocartilagenous tissue (like the firm and flexible elastic cartilage of the ear) which is positioned between the two bones that form the joint. The TMJs are one of the only synovial joints in the human body with an articular disc, another being the sternoclavicular joint. The disc divides each joint into two. The lower joint compartment formed by the mandible and the articular disc is involved in rotational movement -- this is the initial movement of the jaw when the mouth opens. The upper joint compartment formed by the articular disk and the temporal bone is involved in translational movement -- this is the secondary gliding motion of the jaw as it is opened widely. The part of the mandible which mates to the under-surface of the disc is the condyle and the part of the temporal bone which mates to the upper surface of the disk is the glenoid (or mandibular) fossa[WP]. +subset: pheno_slim +synonym: "articulatio temporomandibularis" RELATED LATIN [http://en.wikipedia.org/wiki/Temporomandibular_joint] +synonym: "dentary-squamosal joint" RELATED [http://palaeos.com/vertebrates/glossary/glossaryT.html] +synonym: "squamosal-dentary joint" RELATED [http://palaeos.com/vertebrates/glossary/glossaryT.html] +synonym: "tempero-mandibular joint" RELATED [http://en.wikipedia.org/wiki/Temporomandibular_joint] +synonym: "temperomandibular joint" EXACT [HP:0010754] +synonym: "temporalmandibular joint" RELATED [http://en.wikipedia.org/wiki/Temporomandibular_joint] +synonym: "temporomandibular" RELATED [http://en.wikipedia.org/wiki/Temporomandibular_joint] +synonym: "temporomandibular articulation" RELATED [http://en.wikipedia.org/wiki/Temporomandibular_joint] +synonym: "temporomandibular joint" RELATED [http://en.wikipedia.org/wiki/Temporomandibular_joint] +synonym: "TMJ" EXACT [BTO:0003674, http://en.wikipedia.org/wiki/Temporomandibular_joint] +xref: BTO:0003674 +xref: EMAPA:19196 +xref: FMA:54832 +xref: GAID:272 +xref: http://linkedlifedata.com/resource/umls/id/C0039493 +xref: http://www.snomedbrowser.com/Codes/Details/181814009 +xref: MA:0002899 +xref: MESH:D013704 +xref: NCIT:C32888 +xref: Temporomandibular:joint +xref: UMLS:C0039493 {source="ncithesaurus:Jaw_Joint"} +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011171 ! joint connecting upper and lower jaws +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001695 ! squamous part of temporal bone +intersection_of: connects UBERON:0004742 ! dentary +relationship: connects UBERON:0001695 ! squamous part of temporal bone +relationship: connects UBERON:0004742 ! dentary +relationship: develops_from UBERON:0011130 ! temporomandibular joint primordium +relationship: in_lateral_side_of UBERON:0000165 {source="FMA-abduced-lr"} ! mouth +relationship: part_of UBERON:0000165 ! mouth + +[Term] +id: UBERON:0003701 +name: calcaneal tendon +def: "The Achilles tendon is a tendon of the posterior leg. It serves to attach the plantaris, gastrocnemius (calf) and soleus muscles to the calcaneus (heel) bone." [http://en.wikipedia.org/wiki/Achilles_tendon] +subset: pheno_slim +synonym: "Achille's tendon" EXACT [] +synonym: "Achilles tendon" EXACT [MA:0002993] +synonym: "Achilles' tendon" EXACT [] +synonym: "calcaneal tendon" EXACT [FMA:51061] +synonym: "tendo Achillis" EXACT LATIN [http://en.wikipedia.org/wiki/Achilles_tendon] +synonym: "tendo calcaneus" EXACT LATIN [MA:0002993] +xref: Achilles:tendon +xref: EMAPA:35853 +xref: FMA:51061 +xref: GAID:277 +xref: http://linkedlifedata.com/resource/umls/id/C0001074 +xref: http://www.snomedbrowser.com/Codes/Details/181705009 +xref: MA:0002993 +xref: MESH:D000125 +xref: NCIT:C32043 +xref: OpenCyc:Mx4rvVjNX5wpEbGdrcN5Y29ycA +xref: UMLS:C0001074 {source="ncithesaurus:Achilles_Tendon"} +is_a: UBERON:0000043 {source="MA"} ! tendon +is_a: UBERON:0004270 ! lower leg connective tissue +is_a: UBERON:0008846 ! skeletal ligament +intersection_of: UBERON:0008846 ! skeletal ligament +intersection_of: connects UBERON:0001450 ! calcaneus +relationship: connects UBERON:0001383 ! muscle of leg +relationship: connects UBERON:0001450 ! calcaneus +relationship: part_of UBERON:0001665 {source="FMA"} ! triceps surae + +[Term] +id: UBERON:0003702 +name: inguinal canal +def: "the passage in the lower abdominal wall through which the spermatic cord in the male or the round ligament in the female, nerves and vessels pass from the pelvic cavity to the scrotum or labia majora, respectively" [ISBN:0-683-40008-8, MESH:A01.047.412, MP:0003673] +subset: pheno_slim +synonym: "canalis inguinalis" RELATED LATIN [http://en.wikipedia.org/wiki/Inguinal_canal] +xref: BTO:0005576 +xref: EMAPA:37881 {source="MA:th"} +xref: FMA:19928 +xref: GAID:28 +xref: http://linkedlifedata.com/resource/umls/id/C0021445 +xref: http://www.snomedbrowser.com/Codes/Details/243966008 +xref: Inguinal:canal +xref: MESH:A01.047.412 +xref: NCIT:C93029 +xref: UMLS:C0021445 {source="ncithesaurus:Inguinal_Canal"} +is_a: UBERON:0004111 {source="FMA"} ! anatomical conduit +relationship: part_of UBERON:0003697 {source="Wikipedia"} ! abdominal wall + +[Term] +id: UBERON:0003703 +name: extrahepatic bile duct +def: "Passages external to the liver for the conveyance of bile. These include the common bile duct and the common hepatic duct." [MESH:A03.159.183.079] +subset: pheno_slim +subset: vertebrate_core +synonym: "bile duct extrahepatic part" RELATED [MA:0002659] +synonym: "extrahepatic biliary system" RELATED [GAID:281] +xref: FMA:14678 +xref: GAID:281 +xref: http://linkedlifedata.com/resource/umls/id/C0206187 +xref: http://www.snomedbrowser.com/Codes/Details/276158002 +xref: MA:0002659 +xref: MESH:D017734 +xref: NCIT:C32573 +xref: UMLS:C0206187 {source="ncithesaurus:Extrahepatic_Bile_Duct"} +is_a: UBERON:0002394 ! bile duct + +[Term] +id: UBERON:0003704 +name: intrahepatic bile duct +def: "Passages within the liver for the conveyance of bile. Includes right and left hepatic ducts even though these may join outside the liver to form the common hepatic duct." [MESH:A03.159.183.158] +subset: pheno_slim +subset: vertebrate_core +synonym: "bile duct intrahepatic part" EXACT [MA:0001630] +synonym: "intrahepatic biliary system" RELATED [] +xref: FMA:15766 +xref: GAID:287 +xref: http://linkedlifedata.com/resource/umls/id/C0005401 +xref: http://www.snomedbrowser.com/Codes/Details/362193005 +xref: MA:0001630 +xref: MESH:D001653 +xref: NCIT:C12677 +xref: TAO:0005169 +xref: UMLS:C0005401 {source="ncithesaurus:Intrahepatic_Bile_Duct"} +xref: ZFA:0005169 +is_a: UBERON:0002394 {source="FMA"} ! bile duct +intersection_of: UBERON:0002394 ! bile duct +intersection_of: part_of UBERON:0002107 ! liver +relationship: contributes_to_morphology_of UBERON:0002107 ! liver +relationship: part_of UBERON:0002107 {source="MA"} ! liver + +[Term] +id: UBERON:0003705 +name: Meckel's diverticulum +def: "A small bulge in the small intestine present at birth. It is a vestigial remnant of the omphalomesenteric duct" [http://en.wikipedia.org/wiki/Meckel's_diverticulum] +synonym: "diverticulum of Meckel" EXACT [FMA:14967] +synonym: "ileal diverticulum" EXACT [FMA:14967] +synonym: "meckel diverticulum" RELATED [GAID:317] +synonym: "Meckel's diverticulum" EXACT [FMA:14967] +synonym: "Meckels diverticulum" RELATED [GAID:317] +xref: FMA:14967 +xref: GAID:317 +xref: galen:MeckelsDiverticulum +xref: Meckel's:diverticulum +xref: MESH:A03.492.411.620.484.612 +xref: ncithesaurus:Meckel_Diverticulum +is_a: UBERON:0006590 ! remnant of embryonic structure +relationship: develops_from UBERON:0007105 {source="Wikipedia"} ! vitelline duct +relationship: part_of UBERON:0002116 ! ileum + +[Term] +id: UBERON:0003706 +name: laryngeal vocal fold +def: "Either of two pairs of folds of mucous membrane projecting into the larynx." [http://medical-dictionary.thefreedictionary.com/] +subset: pheno_slim +synonym: "plica vocalis" RELATED [BTO:0005084] +synonym: "true vocal cord" EXACT [FMA:55457] +synonym: "vocal band" RELATED [BTO:0005084] +synonym: "vocal chord" RELATED [BTO:0005084] +synonym: "vocal cord" EXACT [FMA:55457] +synonym: "vocal fold" RELATED [MESH:A04.329.364.737] +xref: BTO:0005084 +xref: EMAPA:19181 +xref: FMA:55457 +xref: GAID:344 +xref: http://linkedlifedata.com/resource/umls/id/C0042930 +xref: http://www.snomedbrowser.com/Codes/Details/245504003 +xref: MESH:D014827 +xref: NCIT:C12822 +xref: OpenCyc:Mx4rvVieepwpEbGdrcN5Y29ycA +xref: UMLS:C0042930 {source="ncithesaurus:Vocal_Cord"} +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0034681 ! vocal organ +relationship: in_lateral_side_of UBERON:0002486 {source="FMA-abduced-lr"} ! glottis +relationship: part_of UBERON:0002486 {source="BTO", source="FMA-abduced"} ! glottis + +[Term] +id: UBERON:0003707 +name: sinus of Valsalva +def: "one of the anatomic dilations of the ascending aorta, which occurs just above the aortic valve." [http://en.wikipedia.org/wiki/Aortic_sinus] +subset: pheno_slim +synonym: "aortic sinus" EXACT [MP:0010483] +synonym: "Petit sinus" EXACT [MP:0010483] +synonym: "Petit's sinus" EXACT [http://en.wikipedia.org/wiki/Aortic_sinus] +synonym: "sinus aorta" RELATED [http://en.wikipedia.org/wiki/Aortic_sinus] +synonym: "sinus aortae" RELATED [http://en.wikipedia.org/wiki/Aortic_sinus] +synonym: "sinus aortae" RELATED LATIN [http://en.wikipedia.org/wiki/Aortic_sinus] +synonym: "sinus of Morgagni" RELATED [http://en.wikipedia.org/wiki/Aortic_sinus] +synonym: "sinus of Otto" RELATED [http://en.wikipedia.org/wiki/Aortic_sinus] +synonym: "Valsalva sinus" EXACT [MP:0010483] +xref: Aortic:sinus +xref: EMAPA:18625 +xref: FMA:3745 +xref: GAID:472 +xref: http://linkedlifedata.com/resource/umls/id/C0503361 +xref: http://www.snomedbrowser.com/Codes/Details/277732004 +xref: MA:0003051 +xref: MESH:D012850 +xref: NCIT:C33557 +xref: UMLS:C0503361 {source="ncithesaurus:Sinus_of_Valsava"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0010172 ! bulb of aorta +relationship: part_of UBERON:0010172 {source="FMA", source="MP"} ! bulb of aorta + +[Term] +id: UBERON:0003708 +name: carotid sinus +def: "A localized dilation of the internal carotid artery at its origin, the common carotid artery bifurcation." [http://en.wikipedia.org/wiki/Carotid_sinus] +synonym: "carotid bulb" RELATED [http://en.wikipedia.org/wiki/Carotid_sinus] +synonym: "sinus caroticus" RELATED LATIN [http://en.wikipedia.org/wiki/Carotid_sinus] +xref: Carotid:sinus +xref: EMAPA:19320 +xref: FMA:50094 +xref: GAID:482 +xref: http://www.snomedbrowser.com/Codes/Details/281137000 +xref: MESH:D002346 +is_a: UBERON:0001530 ! common carotid artery plus branches + +[Term] +id: UBERON:0003709 +name: circle of Willis +def: "A circle of arteries that supply blood to the brain. The Circle of Willis comprises the following arteries: Anterior cerebral artery (left and right); Anterior communicating artery; Internal carotid artery (left and right); Posterior cerebral artery (left and right); Posterior communicating artery (left and right).The basilar artery and middle cerebral arteries, supplying the brain, are also considered part of the circle" [http://en.wikipedia.org/wiki/Circle_of_Willis] +subset: pheno_slim +synonym: "arterial circle" BROAD [http://en.wikipedia.org/wiki/Circle_of_Willis] +synonym: "arterial circle of Willis" EXACT [] +synonym: "cerebral arterial circle" EXACT [GAID:486] +synonym: "circulus arteriosus cerebri" RELATED LATIN [http://en.wikipedia.org/wiki/Circle_of_Willis] +synonym: "Willis circle" RELATED [GAID:486] +xref: EHDAA2:0000252 +xref: EHDAA:9758 +xref: EMAPA:37829 {source="MA:th"} +xref: FMA:50454 +xref: GAID:486 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1468 +xref: http://en.wikipedia.org/wiki/Circle_of_Willis +xref: http://www.snomedbrowser.com/Codes/Details/362047009 +xref: MESH:D002941 +xref: OpenCyc:Mx4rwSrCwJwpEbGdrcN5Y29ycA +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest + +[Term] +id: UBERON:0003710 +name: vasa vasorum +def: "Nutrient blood vessels which supply the walls of large arteries or veins." [http://en.wikipedia.org/wiki/Vasa_vasorum, MESH:A07.231.836] +synonym: "vas vasorum" EXACT LATIN [FMA:77433, FMA:TA] +xref: FMA:77433 +xref: GAID:526 +xref: http://linkedlifedata.com/resource/umls/id/C0042367 +xref: http://www.snomedbrowser.com/Codes/Details/7524009 +xref: MESH:D014651 +xref: NCIT:C33852 +xref: UMLS:C0042367 {source="ncithesaurus:Vasa_Vasorum"} +is_a: UBERON:0001981 ! blood vessel + +[Term] +id: UBERON:0003711 +name: brachiocephalic vein +def: "The left and right brachiocephalic veins in the upper chest are formed by the union of each corresponding internal jugular vein and subclavian vein. This is at the level of the sternoclavicular joint. These great vessels merge to form the superior vena cava. The brachiocephalic veins are the major veins returning blood to the superior vena cava." [http://en.wikipedia.org/wiki/Brachiocephalic_vein] +synonym: "brachiocephalic venous tree" EXACT [FMA:4723] +synonym: "innomiate vein" RELATED [http://en.wikipedia.org/wiki/Brachiocephalic_vein] +synonym: "innominate trunk" RELATED [http://en.wikipedia.org/wiki/Brachiocephalic_vein] +synonym: "innominate vein" EXACT [FMA:4723] +synonym: "innominate vein" RELATED [GAID:529] +synonym: "innominate vein" RELATED [http://en.wikipedia.org/wiki/Brachiocephalic_vein] +synonym: "innominate veins" RELATED [http://en.wikipedia.org/wiki/Brachiocephalic_vein] +synonym: "vena brachiocephalica" RELATED [http://en.wikipedia.org/wiki/Brachiocephalic_vein] +synonym: "vena brachiocephalica" RELATED LATIN [http://en.wikipedia.org/wiki/Brachiocephalic_vein] +synonym: "venae anonyma" RELATED LATIN [http://en.wikipedia.org/wiki/Brachiocephalic_vein] +xref: Brachiocephalic:vein +xref: EHDAA2:0000182 +xref: EHDAA:9868 +xref: FMA:4723 +xref: GAID:529 +xref: galen:BrachiocephalicVein +xref: http://linkedlifedata.com/resource/umls/id/C0006095 +xref: http://www.snomedbrowser.com/Codes/Details/181371003 +xref: MESH:D016121 +xref: NCIT:C32816 +xref: OpenCyc:Mx4rvz3aUJwpEbGdrcN5Y29ycA +xref: UMLS:C0006095 {source="ncithesaurus:Innominate_Vein"} +is_a: UBERON:0001638 ! vein +relationship: part_of UBERON:0007204 ! brachiocephalic vasculature + +[Term] +id: UBERON:0003712 +name: cavernous sinus +def: "The cavernous sinus (or lateral sellar compartment), within the human head, is a large collection of thin-walled veins creating a cavity bordered by the temporal bone of the skull and the sphenoid bone, lateral to the sella turcica." [http://en.wikipedia.org/wiki/Cavernous_sinus] +synonym: "cavernous" RELATED [http://en.wikipedia.org/wiki/Cavernous_sinus] +synonym: "cavernous sinus syndrome" RELATED [http://en.wikipedia.org/wiki/Cavernous_sinus] +synonym: "cavernous sinuses" RELATED [http://en.wikipedia.org/wiki/Cavernous_sinus] +synonym: "cavernus sinus vein" RELATED [http://en.wikipedia.org/wiki/Cavernous_sinus] +synonym: "parasellar syndrome" RELATED [http://en.wikipedia.org/wiki/Cavernous_sinus] +synonym: "sinus cavernosus" RELATED [http://en.wikipedia.org/wiki/Cavernous_sinus] +xref: Cavernous:sinus +xref: EMAPA:19059 +xref: FMA:50772 +xref: GAID:532 +xref: http://linkedlifedata.com/resource/umls/id/C0007473 +xref: http://www.snomedbrowser.com/Codes/Details/244402005 +xref: MESH:D002426 +xref: NCIT:C12690 +xref: OpenCyc:Mx4rwKAVGJwpEbGdrcN5Y29ycA +xref: UMLS:C0007473 {source="ncithesaurus:Cavernous_Sinus"} +is_a: UBERON:0005486 ! venous dural sinus + +[Term] +id: UBERON:0003713 +name: splenic vein +def: "A vein arising from the splenic trabecular vein in the hilum of the spleen that drains into the portal vein." [ncithesaurus:Splenic_Vein] +synonym: "lienal vein" RELATED [http://en.wikipedia.org/wiki/Splenic_vein, MA:0002164] +synonym: "vena lienalis" RELATED LATIN [http://en.wikipedia.org/wiki/Splenic_vein] +synonym: "vena splenica" EXACT LATIN [FMA:14331, FMA:TA] +xref: EMAPA:37226 {source="MA:th"} +xref: FMA:14331 +xref: GAID:541 +xref: galen:SplenicVein +xref: http://linkedlifedata.com/resource/umls/id/C0038001 +xref: http://www.snomedbrowser.com/Codes/Details/278029005 +xref: MA:0002164 +xref: MESH:D013162 +xref: NCIT:C33608 +xref: OpenCyc:Mx4rwCt0eZwpEbGdrcN5Y29ycA +xref: Splenic:vein +xref: UMLS:C0038001 {source="ncithesaurus:Splenic_Vein"} +is_a: UBERON:0001638 ! vein + +[Term] +id: UBERON:0003714 +name: neural tissue +def: "Portion of tissue in the nervous system which consists of neurons and glial cells, and may also contain parts of the vasculature." [FMA:9642] +synonym: "nerve tissue" EXACT [FMA:9642] +synonym: "nervous tissue" EXACT [FMA:9642] +synonym: "portion of neural tissue" EXACT [FMA:9642] +xref: AAO:0000325 +xref: AEO:0000123 +xref: EHDAA2:0003123 +xref: FMA:9642 +xref: GAID:609 +xref: http://linkedlifedata.com/resource/umls/id/C0027757 +xref: http://www.snomedbrowser.com/Codes/Details/91728009 +xref: MESH:D009417 +xref: NCIT:C13052 +xref: OpenCyc:Mx4rVmfYCsQ_QdeM_bFAeS8NRQ +xref: UMLS:C0027757 {source="ncithesaurus:Nervous_Tissue"} +is_a: UBERON:0000479 ! tissue +disjoint_from: UBERON:0004755 ! skeletal tissue +relationship: part_of UBERON:0001016 ! nervous system + +[Term] +id: UBERON:0003715 +name: splanchnic nerve +def: "The major nerves supplying sympathetic innervation to the abdomen, including the greater, lesser, and lowest (or smallest) splanchnic nerves that are formed by preganglionic fibers from the spinal cord which pass through the paravertebral ganglia and then to the celiac ganglia and plexuses and the lumbar splanchnic nerves carry fibers which pass through the lumbar paravertebral ganglia to the mesenteric and hypogastric ganglia." [MP:0008318] +subset: pheno_slim +synonym: "splanchnic nerves" RELATED [BAMS:spn] +synonym: "visceral nerve" RELATED [http://en.wikipedia.org/wiki/Splanchnic_nerves] +xref: BAMS:spn +xref: EMAPA:37959 {source="MA:th"} +xref: FMA:5883 +xref: GAID:800 +xref: http://www.snomedbrowser.com/Codes/Details/264198001 +xref: MESH:D013153 +xref: Splanchnic:nerves +is_a: UBERON:0034729 ! sympathetic nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: innervates UBERON:0000916 ! abdomen +relationship: contributes_to_morphology_of UBERON:0000013 ! sympathetic nervous system +relationship: innervates UBERON:0000916 ! abdomen + +[Term] +id: UBERON:0003716 +name: recurrent laryngeal nerve +def: "A branch of the vagus nerve that supplies motor function and sensation to the larynx (voice box). It travels within the endoneurium. It is the nerve of the 6th Branchial Arch." [http://en.wikipedia.org/wiki/Recurrent_laryngeal_nerve] +synonym: "inferior laryngeal nerve" RELATED [GAID:804] +synonym: "nervus laryngeus recurrens" EXACT LATIN [http://en.wikipedia.org/wiki/Recurrent_laryngeal_nerve] +synonym: "ramus recurrens" RELATED [AAO:0010754] +synonym: "recurrent laryngeal nerve from vagus nerve" EXACT [] +synonym: "recurrent nerve" BROAD [http://en.wikipedia.org/wiki/Recurrent_laryngeal_nerve] +synonym: "vagus X nerve recurrent laryngeal branch" EXACT [VHOG:0001347] +xref: AAO:0010754 +xref: FMA:6246 +xref: GAID:804 +xref: http://en.wikipedia.org/wiki/Recurrent_laryngeal_nerve +xref: http://www.snomedbrowser.com/Codes/Details/24227007 +xref: MESH:D012009 +xref: VHOG:0001347 +is_a: UBERON:0011779 ! nerve of head region +is_a: UBERON:0035642 ! laryngeal nerve +relationship: branching_part_of UBERON:0001759 ! vagus nerve +relationship: develops_from UBERON:0003117 {source="Wikipedia"} ! pharyngeal arch 6 +relationship: part_of UBERON:0001759 ! vagus nerve + +[Term] +id: UBERON:0003718 +name: muscle spindle +def: "The sensory organs in muscle that are involved in the stretch reflex." [MP:0004069] +subset: pheno_slim +synonym: "muscle stretch receptor" RELATED [GAID:819] +synonym: "neuromuscular spindle" EXACT [FMA:83607] +synonym: "neuromuscular spindle" RELATED [GAID:819] +xref: FMA:83607 +xref: GAID:819 +xref: http://linkedlifedata.com/resource/umls/id/C0027871 +xref: http://www.snomedbrowser.com/Codes/Details/12945004 +xref: MESH:A08.800.550.700.500.500 +xref: NCIT:C13824 +xref: UMLS:C0027871 {source="ncithesaurus:Muscle_Spindle"} +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0001016 ! nervous system + +[Term] +id: UBERON:0003719 +name: Pacinian corpuscle +alt_id: UBERON:0003717 +def: "Any of the rapidly adapting mechanoreceptors found in subcutaneous tissue beneath both hairy and glabrous skin, and which normally contain an afferent nerve fiber surrounded by a capsule with multiple concentric layers." [http://en.wikipedia.org/wiki/Lamellar_corpuscle, MP:0000988] +subset: pheno_slim +synonym: "corpuscle of golgi-mazzoni" EXACT [FMA:83609] +synonym: "corpusculum lamellosum" EXACT LATIN [http://en.wikipedia.org/wiki/Lamellar_corpuscle] +synonym: "golgi mazzoni corpuscle" RELATED [GAID:817] +synonym: "golgi-mazzoni" RELATED [http://en.wikipedia.org/wiki/Pacinian_corpuscle] +synonym: "golgi-mazzoni corpuscle" EXACT [FMA:83609] +synonym: "golgi-mazzoni corpuscles" RELATED [http://en.wikipedia.org/wiki/Pacinian_corpuscle] +synonym: "lamellar corpuscle" EXACT [http://en.wikipedia.org/wiki/Lamellar_corpuscle] +synonym: "lamellated corpuscle" RELATED [http://en.wikipedia.org/wiki/Pacinian_corpuscle] +synonym: "pacinian body" RELATED [http://en.wikipedia.org/wiki/Pacinian_corpuscle] +synonym: "Pacinian corpuscle" EXACT [http://en.wikipedia.org/wiki/Lamellar_corpuscle] +synonym: "pacinian corpuscle" RELATED [http://en.wikipedia.org/wiki/Pacinian_corpuscle] +synonym: "pacinian corpuscle end-organs" RELATED [http://en.wikipedia.org/wiki/Pacinian_corpuscle] +synonym: "pacinian corpuscles" RELATED [http://en.wikipedia.org/wiki/Pacinian_corpuscle] +synonym: "vater-pacini corpuscle" RELATED [http://en.wikipedia.org/wiki/Pacinian_corpuscle] +synonym: "vater-pacini corpuscles" RELATED [http://en.wikipedia.org/wiki/Pacinian_corpuscle] +xref: FMA:83604 +xref: FMA:83609 +xref: GAID:817 +xref: GAID:820 +xref: http://en.wikipedia.org/wiki/File\:Gray935.png +xref: http://www.snomedbrowser.com/Codes/Details/37419002 +xref: Lamellar:corpuscle +xref: MESH:A08.800.550.700.500.300 +xref: MESH:A08.800.550.700.500.700 +xref: NCIT:C13172 +xref: NIF_Subcellular:FMA_83604 +is_a: UBERON:0012449 {source="Wikipedia"} ! mechanoreceptor +relationship: part_of UBERON:0002067 {notes="may also be located in organs - check"} ! dermis + +[Term] +id: UBERON:0003720 +name: anterior cranial fossa +def: "The floor of the anterior fossa is formed by the orbital plates of the frontal, the cribriform plate of the ethmoid, and the small wings and front part of the body of the sphenoid; it is limited behind by the posterior borders of the small wings of the sphenoid and by the anterior margin of the chiasmatic groove. The lesser wings of the sphenoid separate the anterior and middle fossae." [http://en.wikipedia.org/wiki/Anterior_cranial_fossa] +synonym: "anterior fossa" BROAD [] +synonym: "fossa cranii anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_cranial_fossa] +xref: FMA:9682 +xref: GAID:83 +xref: http://en.wikipedia.org/wiki/Anterior_cranial_fossa +xref: http://linkedlifedata.com/resource/umls/id/C0230044 +xref: MESH:D035262 +xref: NCIT:C32090 +xref: UMLS:C0230044 {source="ncithesaurus:Anterior_Fossa"} +is_a: UBERON:0008789 ! cranial fossa +disjoint_from: UBERON:0008788 {source="lexical"} ! posterior cranial fossa + +[Term] +id: UBERON:0003721 +name: lingual nerve +def: "The lingual nerve is a branch of the mandibular nerve (CN V3), itself a branch of the trigeminal nerve, which supplies sensory innervation to the tongue. It also carries fibers from the facial nerve, which return taste information from the anterior two thirds of the tongue." [http://en.wikipedia.org/wiki/Lingual_nerve] +synonym: "lingual branch of trigeminal nerve" EXACT [] +synonym: "trigeminal nerve lingual branch" EXACT [] +synonym: "trigeminal V nerve lingual branch" EXACT [MA:0001102] +xref: BAMS:5lg +xref: EMAPA:19168 +xref: FMA:53218 +xref: GAID:835 +xref: http://www.snomedbrowser.com/Codes/Details/280260006 +xref: Lingual:nerve +xref: MA:0001102 +xref: MESH:D008036 +is_a: UBERON:0011779 ! nerve of head region +intersection_of: UBERON:0001021 ! nerve +intersection_of: innervates UBERON:0001723 ! tongue +relationship: branching_part_of UBERON:0000375 ! mandibular nerve +relationship: innervates UBERON:0001723 ! tongue +relationship: part_of UBERON:0000375 ! mandibular nerve + +[Term] +id: UBERON:0003722 +name: middle cranial fossa +def: "The compartment containing the anterior extremities and half the inferior surface of the temporal lobes (TEMPORAL LOBE) of the cerebral hemispheres. Lying posterior and inferior to the anterior cranial fossa (CRANIAL FOSSA, ANTERIOR), it is formed by part of the TEMPORAL BONE and SPHENOID BONE. It is separated from the posterior cranial fossa (CRANIAL FOSSA, POSTERIOR) by crests formed by the superior borders of the petrous parts of the temporal bones[MESH]. The middle fossa, deeper than the anterior cranial fossa, is narrow medially and widens laterally to the sides of the skull. It is separated from the posterior fossa by the clivus and the petrous crest. It is bounded in front by the posterior margins of the lesser wings of the sphenoid bone, the anterior clinoid processes, and the ridge forming the anterior margin of the chiasmatic groove; behind, by the superior angles of the petrous portions of the temporal bones and the dorsum sellC&; laterally by the temporal squamC&, sphenoidal angles of the parietals, and greater wings of the sphenoid. It is traversed by the squamosal, sphenoparietal, sphenosquamosal, and sphenopetrosal sutures[WP]." [http://en.wikipedia.org/wiki/Middle_cranial_fossa, MESH:A01.456.830.165] +synonym: "fossa cranii media" RELATED LATIN [http://en.wikipedia.org/wiki/Middle_cranial_fossa] +synonym: "middle fossa" BROAD [http://en.wikipedia.org/wiki/Middle_cranial_fossa] +xref: FMA:54369 +xref: GAID:84 +xref: http://en.wikipedia.org/wiki/Middle_cranial_fossa +xref: http://linkedlifedata.com/resource/umls/id/C0230045 +xref: MESH:D035301 +xref: NCIT:C33117 +xref: UMLS:C0230045 {source="ncithesaurus:Middle_Fossa"} +is_a: UBERON:0008789 ! cranial fossa + +[Term] +id: UBERON:0003723 +name: vestibular nerve +def: "The vestibular nerve is one of the two branches of the Vestibulocochlear nerve (the cochlear nerve being the other). It goes to the semicircular canals via the vestibular ganglion. It receives positional information. Axons of the vestibular nerve synapse in the vestibular nucleus on the lateral floor and wall of the fourth ventricle in the pons and medulla. It arises from bipolar cells in the vestibular ganglion, ganglion of Scarpa, which is situated in the upper part of the outer end of the internal auditory meatus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Vestibular_nerve] +subset: pheno_slim +synonym: "nervus vestibularis" RELATED LATIN [http://en.wikipedia.org/wiki/Vestibular_nerve] +synonym: "scarpa ganglion" RELATED [GAID:840] +synonym: "scarpa's ganglion" RELATED [GAID:840] +synonym: "scarpas ganglion" RELATED [GAID:840] +synonym: "vestibular root of acoustic nerve" EXACT [FMA:53401] +synonym: "vestibular root of eighth cranial nerve" EXACT [FMA:53401] +synonym: "vestibulocochlear nerve vestibular root" RELATED [BAMS:vVIIIn] +synonym: "vestibulocochlear VIII nerve vestibular component" EXACT [MA:0001111] +xref: BAMS:vVIIIn +xref: DHBA:12869 +xref: EHDAA2:0002200 +xref: EHDAA:3749 +xref: EMAPA:17803 +xref: FMA:53401 +xref: GAID:840 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1389 +xref: http://linkedlifedata.com/resource/umls/id/C0042598 +xref: http://www.snomedbrowser.com/Codes/Details/362464003 +xref: MA:0001111 +xref: MBA:413 +xref: MESH:D014725 +xref: NCIT:C12820 +xref: OpenCyc:Mx4rvxAWX5wpEbGdrcN5Y29ycA +xref: UMLS:C0042598 {source="ncithesaurus:Vestibular_Nerve"} +xref: Vestibular:nerve +xref: VHOG:0001181 +is_a: UBERON:0011779 ! nerve of head region +intersection_of: UBERON:0001021 ! nerve +intersection_of: branching_part_of UBERON:0001648 ! vestibulocochlear nerve +intersection_of: extends_fibers_into UBERON:0007228 ! vestibular nucleus +intersection_of: innervates UBERON:0001840 ! semicircular canal +intersection_of: innervates UBERON:0006585 ! vestibular organ +relationship: branching_part_of UBERON:0001648 ! vestibulocochlear nerve +relationship: extends_fibers_into UBERON:0007228 ! vestibular nucleus +relationship: innervates UBERON:0001840 ! semicircular canal +relationship: innervates UBERON:0006585 ! vestibular organ +relationship: part_of UBERON:0001648 ! vestibulocochlear nerve +relationship: part_of UBERON:0004681 ! vestibular system + +[Term] +id: UBERON:0003724 +name: musculocutaneous nerve +def: "a large branch of the brachial plexus supplying various parts of the upper arm (as flexor muscles) and forearm (as the skin)." [http://www.merriam-webster.com/medical/musculocutaneous%20nerve] +synonym: "casserio's nerve" EXACT [FMA:37064] +synonym: "nervus musculocutaneus" RELATED LATIN [http://en.wikipedia.org/wiki/Musculocutaneous_nerve] +xref: FMA:37064 +xref: GAID:844 +xref: http://www.snomedbrowser.com/Codes/Details/181019000 +xref: MESH:D009138 +xref: Musculocutaneous:nerve +xref: OpenCyc:Mx4rvzp0l5wpEbGdrcN5Y29ycA +is_a: UBERON:0001021 ! nerve +relationship: branching_part_of UBERON:0001814 ! brachial nerve plexus +relationship: innervates UBERON:0002102 ! forelimb +relationship: part_of UBERON:0001814 ! brachial nerve plexus + +[Term] +id: UBERON:0003725 +name: cervical nerve plexus +def: "An arrangement of nerve fibers, running from the spine that travels to the head and neck where it innervates skin and muscle." [UBERON:cjm] +synonym: "cervical nerve plexus" EXACT [FMA:5904] +synonym: "cervical plexus" EXACT [FMA:5904] +synonym: "plexus cervicalis" EXACT LATIN [FMA:5904, FMA:TA] +synonym: "plexus cervicalis" RELATED LATIN [http://en.wikipedia.org/wiki/Cervical_plexus] +xref: BAMS:cep +xref: Cervical:plexus +xref: FMA:5904 +xref: GAID:847 +xref: http://www.snomedbrowser.com/Codes/Details/181107005 +xref: MESH:D002572 +xref: OpenCyc:Mx4rvkEE3JwpEbGdrcN5Y29ycA +is_a: UBERON:0001813 ! spinal nerve plexus +intersection_of: UBERON:0001813 ! spinal nerve plexus +intersection_of: innervates UBERON:0007811 ! craniocervical region +relationship: innervates UBERON:0007811 ! craniocervical region + +[Term] +id: UBERON:0003726 +name: thoracic nerve +def: "The twelve spinal nerves on each side of the thorax. They include eleven INTERCOSTAL NERVES and one subcostal nerve. Both sensory and motor, they supply the muscles and skin of the thoracic and abdominal walls." [MESH:A08.800.800.720.800] +synonym: "nervi thoracici" RELATED LATIN [http://en.wikipedia.org/wiki/Thoracic_nerves] +synonym: "nervus thoracis" EXACT LATIN [FMA:5860, FMA:TA] +synonym: "pectoral nerve" RELATED [GAID:857] +synonym: "thoracic spinal nerve" EXACT [FMA:5860] +xref: FMA:5860 +xref: GAID:857 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1725 +xref: http://www.snomedbrowser.com/Codes/Details/360498003 +xref: MESH:D013900 +xref: OpenCyc:Mx4rwSJp_ZwpEbGdrcN5Y29ycA +xref: Thoracic:nerves +is_a: UBERON:0001780 ! spinal nerve +intersection_of: UBERON:0001780 ! spinal nerve +intersection_of: extends_fibers_into UBERON:0003038 ! thoracic spinal cord +relationship: extends_fibers_into UBERON:0003038 ! thoracic spinal cord + +[Term] +id: UBERON:0003727 +name: intercostal nerve +def: "The intercostal nerves are the anterior divisions (rami anteriores; ventral divisions) of the thoracic spinal nerves from T1 to T11. Each nerve is connected with the adjoining ganglion of the sympathetic trunk by a gray and a white ramus communicans. The intercostal nerves are distributed chiefly to the thoracic pleura and abdominal peritoneum and differ from the anterior divisions of the other spinal nerves in that each pursues an independent course without plexus formation. The first two nerves supply fibers to the upper limb in addition to their thoracic branches; the next four are limited in their distribution to the parietes of the thorax; the lower five supply the parietes of the thorax and abdomen. The 7th intercostal nerve terminates at the xyphoid process, at the lower end of the sternum. The 10th intercostal nerve terminates at the umbilicus. The twelfth thoracic is distributed to the abdominal wall and groin. [WP,unvetted]." [http://en.wikipedia.org/wiki/Intercostal_nerves] +synonym: "anterior ramus of thoracic nerve" EXACT [FMA:6028] +synonym: "anterior ramus of thoracic spinal nerve" EXACT [FMA:6028] +synonym: "nervi intercostales" RELATED LATIN [http://en.wikipedia.org/wiki/Intercostal_nerves] +synonym: "ramus anterior, nervus thoracicus" EXACT [FMA:6028] +synonym: "thoracic anterior ramus" EXACT [FMA:6028] +synonym: "ventral ramus of thoracic spinal nerve" EXACT [FMA:6028] +xref: EMAPA:18227 +xref: FMA:6028 +xref: GAID:858 +xref: http://linkedlifedata.com/resource/umls/id/C1285089 +xref: http://www.snomedbrowser.com/Codes/Details/279568001 +xref: Intercostal:nerves +xref: MESH:D007367 +xref: NCIT:C32825 +xref: UMLS:C1285089 {source="ncithesaurus:Intercostal_Nerve"} +is_a: UBERON:0001780 ! spinal nerve + +[Term] +id: UBERON:0003728 +name: mediastinum +def: "The central part of the thoracic cavity enclosed by the left and right pleurae." [http://en.wikipedia.org/wiki/Mediastinum, UBERON:cjm] +subset: efo_slim +subset: pheno_slim +synonym: "mediastinal part of chest" EXACT [FMA:9826] +xref: CALOHA:TS-2338 +xref: EFO:0003057 +xref: EMAPA:36001 +xref: FMA:9826 +xref: GAID:94 +xref: http://en.wikipedia.org/wiki/Mediastinum +xref: http://linkedlifedata.com/resource/umls/id/C0025066 +xref: http://www.snomedbrowser.com/Codes/Details/181217005 +xref: MA:0003075 +xref: MESH:A01.911.800.500 +xref: NCIT:C12748 +xref: OpenCyc:Mx4rv2OKJ5wpEbGdrcN5Y29ycA +xref: UMLS:C0025066 {source="ncithesaurus:Mediastinum"} +is_a: UBERON:0002553 ! anatomical cavity +relationship: part_of UBERON:0002224 ! thoracic cavity +relationship: surrounded_by UBERON:0035431 {source="FMA"} ! mediastinal pleura + +[Term] +id: UBERON:0003729 +name: mouth mucosa +def: "A mucous membrane that lines the mouth." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "buccal mucosa" RELATED [GAID:951] +synonym: "mouth mucosa" EXACT [FMA:59660] +synonym: "mouth mucous membrane" EXACT [OBOL:accepted] +synonym: "mouth organ mucosa" EXACT [OBOL:accepted] +synonym: "mucosa of mouth" EXACT [OBOL:accepted] +synonym: "mucosal lining of mouth" RELATED [MA:0002794] +synonym: "mucous membrane of mouth" EXACT [FMA:59660] +synonym: "oral mucosa" RELATED [GAID:951] +synonym: "oral mucous membrane" EXACT [] +synonym: "oral part of viscerocranial mucosa" EXACT [FMA:59660] +synonym: "tunica mucosa oris" EXACT LATIN [FMA:59660, FMA:TA] +synonym: "tunica mucosa oris" RELATED LATIN [http://en.wikipedia.org/wiki/Oral_mucosa] +xref: BTO:0002860 +xref: CALOHA:TS-0716 +xref: EMAPA:26937 +xref: FMA:59660 +xref: GAID:951 +xref: http://linkedlifedata.com/resource/umls/id/C0026639 +xref: MA:0002794 +xref: MESH:D009061 +xref: NCIT:C77637 +xref: Oral:mucosa +xref: UMLS:C0026639 {source="ncithesaurus:Oral_Mucosa"} +is_a: UBERON:0000344 ! mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0000165 ! mouth +relationship: bounding_layer_of UBERON:0000165 ! mouth +relationship: continuous_with UBERON:0000355 ! pharyngeal mucosa +relationship: continuous_with UBERON:0001458 ! skin of lip +relationship: contributes_to_morphology_of UBERON:0001007 ! digestive system +relationship: part_of UBERON:0000165 ! mouth + +[Term] +id: UBERON:0003820 +name: prostate bud +def: "A region of the fetal urogenital sinus epithelium destined to become the prostate[GO]." [GO:0060513] +synonym: "prostate ductal progenitor" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/18977204] +synonym: "prostate gland bud" RELATED [EMAPA:36141] +synonym: "prostate primordium" RELATED [] +synonym: "prostatic bud" EXACT [] +xref: EMAPA:36141 +is_a: UBERON:0004902 ! urogenital sinus epithelium +is_a: UBERON:0005153 ! epithelial bud +intersection_of: UBERON:0005153 ! epithelial bud +intersection_of: has_potential_to_develop_into UBERON:0002367 ! prostate gland +relationship: develops_from UBERON:0009847 {source="http://www.ncbi.nlm.nih.gov/pubmed/18977204"} ! prostate field +relationship: has_potential_to_develop_into UBERON:0002367 ! prostate gland + +[Term] +id: UBERON:0003821 +name: metapodium bone +def: "A bone of the metapodial skeleton" [https://orcid.org/0000-0002-6601-2165] +synonym: "metacarpal or metatarsal bone" EXACT [] +synonym: "metacarpal/metatarsal" EXACT [] +synonym: "metacarpal/metatarsal bone" EXACT [MA:0000301] +synonym: "metapodi bone" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "metapodial bone" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "metapodium bone" EXACT [http://en.wiktionary.org/wiki/metapodial, https://orcid.org/0000-0002-6601-2165] +xref: EMAPA:37284 {source="MA:th"} +xref: MA:0000301 +is_a: UBERON:0003606 ! limb long bone +is_a: UBERON:0012357 ! digitopodium bone +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0009877 ! metapodium region +relationship: part_of UBERON:0010546 {notes="https://github.com/obophenotype/uberon/wiki/Skeleton-partonomy-Design-Pattern"} ! metapodial skeleton + +[Term] +id: UBERON:0003822 +name: forelimb stylopod +def: "The part of the forelimb between pectoral region and the elbow, corresponding to the humerus." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "arm" RELATED INCONSISTENT [FMA:24890] +synonym: "brachial region" EXACT [] +synonym: "brachium" EXACT [VSAO:0005057] +synonym: "fore propodium" EXACT [AAO:0000199] +synonym: "forelimb propodium" EXACT [] +synonym: "forelimb stylopodial element" EXACT [MA:th] +synonym: "forelimb stylopodium" EXACT [OBOL:automatic] +synonym: "proximal segment of free upper limb" EXACT [] +synonym: "regio brachialis" EXACT LATIN [FMA:24890, FMA:TA] +synonym: "stylopod of arm" EXACT [] +synonym: "stylopod of forelimb" EXACT [] +synonym: "upper arm" EXACT HUMAN_PREFERRED [MA:0000035] +synonym: "wing stylopod" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +xref: AAO:0000199 +xref: EHDAA2:0002112 +xref: EHDAA:4186 +xref: EHDAA:6234 +xref: EMAPA:17424 +xref: FMA:24890 +xref: galen:Arm +xref: http://linkedlifedata.com/resource/umls/id/C0446516 +xref: http://www.snomedbrowser.com/Codes/Details/302538001 +xref: MA:0000035 +xref: MESH:D001132 +xref: NCIT:C32141 +xref: OpenCyc:Mx4rvVj0Z5wpEbGdrcN5Y29ycA +xref: UMLS:C0446516 {source="ncithesaurus:Arm"} +xref: VHOG:0000343 +xref: VSAO:0005057 +is_a: UBERON:0002472 ! stylopod +is_a: UBERON:0008785 ! upper limb segment +intersection_of: UBERON:0002472 ! stylopod +intersection_of: part_of UBERON:0002102 ! forelimb +relationship: contributes_to_morphology_of UBERON:0002102 ! forelimb +relationship: has_skeleton UBERON:0015053 ! humerus endochondral element +relationship: part_of UBERON:0001460 {source="MA"} ! arm + +[Term] +id: UBERON:0003823 +name: hindlimb zeugopod +def: "The middle limb segment of the pelvic free limb, between the autopod and stylopod segments. Includes as parts the hindlimb zeugopodial skeleton, which includes as parts the tibia and fibula, or their cartilage precursors, or evolutionary variants." [PHENOSCAPE:curators] +subset: efo_slim +subset: pheno_slim +synonym: "calf" NARROW [] +synonym: "calf of leg" EXACT [FMA:24984] +synonym: "crus" EXACT [VSAO:0005060] +synonym: "crus of hindlimb" EXACT [] +synonym: "hind epipodium" RELATED INCONSISTENT [] +synonym: "hind limb middle limb segment" EXACT [OBOL:automatic] +synonym: "hind limb zeudopodium" EXACT [VHOG:0000348] +synonym: "hind limb zeugopod" EXACT [OBOL:automatic] +synonym: "hindlimb epipodium" EXACT [] +synonym: "hindlimb middle limb segment" EXACT [OBOL:automatic] +synonym: "hindlimb zeudopodium" EXACT [VHOG:0000348] +synonym: "hindlimb zeugopod" EXACT [OBOL:automatic] +synonym: "hindlimb zeugopodium" EXACT [OBOL:automatic] +synonym: "intermediate segment of free lower limb" EXACT [FMA:24979] +synonym: "leg" RELATED INCONSISTENT [FMA:24979, MESH:A01.378.610.500] +synonym: "lower extremity middle limb segment" EXACT [OBOL:automatic] +synonym: "lower extremity zeugopod" EXACT [OBOL:automatic] +synonym: "lower leg" EXACT HUMAN_PREFERRED [MA:0000051] +synonym: "middle limb segment of hind limb" EXACT [OBOL:automatic] +synonym: "middle limb segment of hindlimb" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "posterior curral region" EXACT [FMA:24984] +synonym: "posterior leg region" EXACT [FMA:24984] +synonym: "posterior part of leg" EXACT [FMA:24984] +synonym: "posterior region of leg" EXACT [FMA:24984] +synonym: "regio cruris posterior" EXACT LATIN [FMA:24984, FMA:TA] +synonym: "regio surae" EXACT LATIN [FMA:24984, FMA:TA] +synonym: "shank" EXACT [VSAO:0005060] +synonym: "sura" EXACT LATIN [FMA:24984, FMA:TA] +synonym: "sural region" EXACT [FMA:24984] +synonym: "zeugopod of hind limb" EXACT [OBOL:automatic] +synonym: "zeugopod of hindlimb" EXACT [OBOL:automatic] +xref: EFO:0003051 +xref: EHDAA2:0001030 +xref: EHDAA:5165 +xref: EHDAA:6190 +xref: EMAPA:17496 +xref: FMA:24979 +xref: FMA:24984 +xref: galen:Leg +xref: http://en.wikipedia.org/wiki/Forearm +xref: http://linkedlifedata.com/resource/umls/id/C1140621 +xref: http://www.snomedbrowser.com/Codes/Details/244015008 +xref: MA:0000051 +xref: MESH:D007866 +xref: NCIT:C32974 +xref: OpenCyc:Mx4rvczZBpwpEbGdrcN5Y29ycA +xref: UMLS:C1140621 {source="ncithesaurus:Leg"} +xref: VHOG:0000348 +xref: VSAO:0005060 +is_a: UBERON:0002471 ! zeugopod +is_a: UBERON:0008784 ! lower limb segment +intersection_of: UBERON:0002471 ! zeugopod +intersection_of: part_of UBERON:0002103 ! hindlimb +relationship: contributes_to_morphology_of UBERON:0002103 ! hindlimb +relationship: has_skeleton UBERON:0010720 ! hindlimb zeugopod skeleton +relationship: part_of UBERON:0000978 {source="MA"} ! leg + +[Term] +id: UBERON:0003824 +name: nerve of thoracic segment +def: "A nerve that is part of a thorax [Automatically generated definition]." [OBOL:automatic] +synonym: "nerve of thorax" EXACT [OBOL:automatic] +synonym: "thoracic segment nerve" EXACT [MA:0000562] +synonym: "thorax nerve" EXACT [OBOL:automatic] +synonym: "upper body nerve" RELATED [MA:0000562] +xref: EMAPA:37265 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/359876006 +xref: MA:0000562 +xref: MESH:D013900 +is_a: UBERON:0003439 ! nerve of trunk region +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk +relationship: part_of UBERON:0000915 ! thoracic segment of trunk + +[Term] +id: UBERON:0003825 +name: nerve of abdominal segment +def: "A nerve that is part of an abdominal segment of trunk [Automatically generated definition]." [OBOL:automatic] +synonym: "abdominal segment nerve" EXACT [MA:0000528] +xref: EMAPA:37061 {source="MA:th"} +xref: MA:0000528 +is_a: UBERON:0003439 ! nerve of trunk region +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk +relationship: part_of UBERON:0002417 ! abdominal segment of trunk + +[Term] +id: UBERON:0003826 +name: upper leg bone +def: "A bone that is part of a hindlimb stylopod [Automatically generated definition]." [https://sourceforge.net/tracker/index.php?func=detail&aid=3586533&group_id=76834&atid=1205376, OBOL:automatic] +comment: May be merged into femur. See https://sourceforge.net/tracker/index.php?func=detail&aid=3586533&group_id=76834&atid=1205376 +synonym: "femur" RELATED [https://sourceforge.net/tracker/index.php?func=detail&aid=3586533&group_id=76834&atid=1205376] +xref: EMAPA:35893 +xref: MA:0000682 +is_a: UBERON:0005893 ! leg bone +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0000376 ! hindlimb stylopod +relationship: part_of UBERON:0000376 ! hindlimb stylopod + +[Term] +id: UBERON:0003827 +name: thoracic segment bone +def: "A bone that is part of a thorax [Automatically generated definition]." [OBOL:automatic] +synonym: "bone of thorax" EXACT [OBOL:automatic] +synonym: "bone organ of thorax" EXACT [OBOL:automatic] +synonym: "thorax bone" EXACT [OBOL:automatic] +synonym: "thorax bone organ" EXACT [OBOL:automatic] +synonym: "upper body bone" RELATED [MA:0000559] +xref: EMAPA:37247 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/426649006 +xref: MA:0000559 +is_a: UBERON:0003463 ! trunk bone +is_a: UBERON:0005181 ! thoracic segment organ +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk + +[Term] +id: UBERON:0003828 +name: abdominal segment bone +def: "A bone that is part of an abdominal segment of trunk [Automatically generated definition]." [OBOL:automatic] +synonym: "abdominal segment of trunk bone" EXACT [OBOL:automatic] +synonym: "abdominal segment of trunk bone organ" EXACT [OBOL:automatic] +synonym: "bone of abdominal segment of trunk" EXACT [OBOL:automatic] +synonym: "bone organ of abdominal segment of trunk" EXACT [OBOL:automatic] +xref: EMAPA:37058 {source="MA:th"} +xref: MA:0000525 +is_a: UBERON:0003463 ! trunk bone +is_a: UBERON:0005173 ! abdominal segment element +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk + +[Term] +id: UBERON:0003829 +name: urethra muscle tissue +def: "Any muscle tissue that is part of the urethra." [UBERON:cjm] +synonym: "urethral muscle layer" RELATED [MA:0002649] +xref: EMAPA:37787 {source="MA:th"} +xref: MA:0002649 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005090 ! muscle structure +intersection_of: UBERON:0005090 ! muscle structure +intersection_of: part_of UBERON:0000057 ! urethra +relationship: part_of UBERON:0000057 ! urethra + +[Term] +id: UBERON:0003830 +name: thoracic segment muscle +def: "Any muscle organ that is part of a thorax [Automatically generated definition]." [OBOL:automatic] +synonym: "muscle organ of thorax" EXACT [OBOL:automatic] +synonym: "thorax muscle organ" EXACT [OBOL:automatic] +synonym: "upper body muscle" RELATED [MA:0000561] +xref: MA:0000561 +is_a: UBERON:0001774 ! skeletal muscle of trunk +is_a: UBERON:0005181 ! thoracic segment organ +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk +relationship: part_of UBERON:0004464 {source="prolog"} ! musculature of thorax + +[Term] +id: UBERON:0003831 +name: respiratory system muscle +def: "Any muscle organ that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +synonym: "apparatus respiratorius muscle organ" EXACT [OBOL:automatic] +synonym: "muscle organ of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "muscle organ of respiratory system" EXACT [OBOL:automatic] +synonym: "respiratory system muscle organ" EXACT [OBOL:automatic] +xref: EMAPA:35733 +xref: MA:0001828 +is_a: UBERON:0001630 ! muscle organ +intersection_of: UBERON:0001630 ! muscle organ +intersection_of: part_of UBERON:0001004 ! respiratory system +disjoint_from: UBERON:0005441 {source="http://www.ncbi.nlm.nih.gov/pubmed/15755883"} ! external intercostal muscle +relationship: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0003832 +name: esophagus muscle +def: "Any muscle organ that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] +synonym: "esophageal muscle" EXACT [] +synonym: "esophagus muscle organ" EXACT [OBOL:automatic] +synonym: "gullet muscle organ" EXACT [OBOL:automatic] +synonym: "muscle organ of esophagus" EXACT [OBOL:automatic] +synonym: "muscle organ of gullet" EXACT [OBOL:automatic] +synonym: "muscle organ of oesophagus" EXACT [OBOL:automatic] +synonym: "oesophagus muscle organ" EXACT [OBOL:automatic] +xref: EMAPA:26983 +xref: http://www.snomedbrowser.com/Codes/Details/360961009 +xref: MA:0002682 +is_a: UBERON:0001630 ! muscle organ +is_a: UBERON:0005181 ! thoracic segment organ +is_a: UBERON:0013765 ! digestive system element +intersection_of: UBERON:0001630 ! muscle organ +intersection_of: part_of UBERON:0001043 ! esophagus +relationship: part_of UBERON:0001096 {source="MA"} ! wall of esophagus + +[Term] +id: UBERON:0003833 +name: abdominal segment muscle +def: "A muscle organ that is part of an abdominal segment of trunk [Automatically generated definition]." [OBOL:automatic] +synonym: "abdominal segment of trunk muscle organ" EXACT [OBOL:automatic] +synonym: "muscle organ of abdominal segment of trunk" EXACT [OBOL:automatic] +xref: EMAPA:37060 {source="MA:th"} +xref: MA:0000527 +is_a: UBERON:0001774 ! skeletal muscle of trunk +is_a: UBERON:0005173 ! abdominal segment element +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk + +[Term] +id: UBERON:0003834 +name: thoracic segment blood vessel +def: "A blood vessel that is part of a thorax [Automatically generated definition]." [OBOL:automatic] +synonym: "blood vessel of thorax" EXACT [OBOL:automatic] +synonym: "thorax blood vessel" EXACT [OBOL:automatic] +synonym: "upper body blood vessel" RELATED [MA:0000558] +xref: EMAPA:37238 {source="MA:th"} +xref: MA:0000558 +is_a: UBERON:0003513 ! trunk blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk +relationship: part_of UBERON:0000915 ! thoracic segment of trunk + +[Term] +id: UBERON:0003835 +name: abdominal segment blood vessel +def: "A blood vessel that is part of an abdominal segment of trunk [Automatically generated definition]." [OBOL:automatic] +synonym: "abdominal segment of trunk blood vessel" EXACT [OBOL:automatic] +synonym: "blood vessel of abdominal segment of trunk" EXACT [OBOL:automatic] +xref: EMAPA:37057 {source="MA:th"} +xref: MA:0000524 +is_a: UBERON:0003513 ! trunk blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk +relationship: part_of UBERON:0002417 ! abdominal segment of trunk + +[Term] +id: UBERON:0003836 +name: abdominal segment skin +def: "A skin of body that is part of an abdominal segment of trunk [Automatically generated definition]." [OBOL:automatic] +synonym: "abdominal segment of trunk skin" EXACT [OBOL:automatic] +synonym: "skin of abdominal segment of trunk" EXACT [OBOL:automatic] +xref: EMAPA:37063 {source="MA:th"} +xref: FMA:264898 +xref: MA:0000530 +is_a: UBERON:0001085 ! skin of trunk +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk +relationship: part_of UBERON:0002417 ! abdominal segment of trunk + +[Term] +id: UBERON:0003837 +name: thoracic segment connective tissue +def: "A portion of connective tissue that is part of a thorax [Automatically generated definition]." [OBOL:automatic] +synonym: "connective tissue of thorax" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of thorax" EXACT [OBOL:automatic] +synonym: "textus connectivus of thorax" EXACT [OBOL:automatic] +synonym: "thorax connective tissue" EXACT [OBOL:automatic] +synonym: "thorax portion of connective tissue" EXACT [OBOL:automatic] +synonym: "thorax textus connectivus" EXACT [OBOL:automatic] +synonym: "upper body connective tissue" RELATED [MA:0000560] +xref: EMAPA:37253 {source="MA:th"} +xref: MA:0000560 +is_a: UBERON:0003586 ! trunk connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk +relationship: part_of UBERON:0000915 ! thoracic segment of trunk + +[Term] +id: UBERON:0003838 +name: abdominal segment connective tissue +def: "A portion of connective tissue that is part of an abdominal segment of trunk [Automatically generated definition]." [OBOL:automatic] +synonym: "abdominal segment of trunk connective tissue" EXACT [OBOL:automatic] +synonym: "abdominal segment of trunk portion of connective tissue" EXACT [OBOL:automatic] +synonym: "abdominal segment of trunk textus connectivus" EXACT [OBOL:automatic] +synonym: "connective tissue of abdominal segment of trunk" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of abdominal segment of trunk" EXACT [OBOL:automatic] +synonym: "textus connectivus of abdominal segment of trunk" EXACT [OBOL:automatic] +xref: EMAPA:37059 {source="MA:th"} +xref: MA:0000526 +is_a: UBERON:0003586 ! trunk connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk +relationship: part_of UBERON:0002417 ! abdominal segment of trunk + +[Term] +id: UBERON:0003839 +name: forelimb joint +def: "A limb joint that is part of a forelimb [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "anteriormost limb joint of limb" EXACT [OBOL:automatic] +synonym: "anteriormost limb limb joint" EXACT [OBOL:automatic] +synonym: "fore limb joint of limb" EXACT [OBOL:automatic] +synonym: "fore limb limb joint" EXACT [OBOL:automatic] +synonym: "forelimb joint of limb" EXACT [OBOL:automatic] +synonym: "forelimb limb joint" EXACT [OBOL:automatic] +synonym: "joint of free upper limb" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "joint of limb of anteriormost limb" EXACT [OBOL:automatic] +synonym: "joint of limb of fore limb" EXACT [OBOL:automatic] +synonym: "joint of limb of forelimb" EXACT [OBOL:automatic] +synonym: "joint of limb of superior member" EXACT [OBOL:automatic] +synonym: "joint of limb of upper extremity" EXACT [OBOL:automatic] +synonym: "limb joint of anteriormost limb" EXACT [OBOL:automatic] +synonym: "limb joint of fore limb" EXACT [OBOL:automatic] +synonym: "limb joint of forelimb" EXACT [OBOL:automatic] +synonym: "limb joint of superior member" EXACT [OBOL:automatic] +synonym: "limb joint of upper extremity" EXACT [OBOL:automatic] +synonym: "superior member joint of limb" EXACT [OBOL:automatic] +synonym: "superior member limb joint" EXACT [OBOL:automatic] +synonym: "upper extremity joint of limb" EXACT [OBOL:automatic] +synonym: "upper extremity limb joint" EXACT [OBOL:automatic] +synonym: "wing joint" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +xref: EMAPA:19204 +xref: MA:0000614 +is_a: UBERON:0003657 ! limb joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: part_of UBERON:0002102 ! forelimb +relationship: fma_set_term FMA:71344 +relationship: part_of UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0003840 +name: hindlimb joint +def: "A limb joint that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "hind limb joint of limb" EXACT [OBOL:automatic] +synonym: "hind limb limb joint" EXACT [OBOL:automatic] +synonym: "hindlimb joint of limb" EXACT [OBOL:automatic] +synonym: "hindlimb limb joint" EXACT [OBOL:automatic] +synonym: "inferior member joint of limb" EXACT [OBOL:automatic] +synonym: "inferior member limb joint" EXACT [OBOL:automatic] +synonym: "joint of free lower limb" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "joint of limb of hind limb" EXACT [OBOL:automatic] +synonym: "joint of limb of hindlimb" EXACT [OBOL:automatic] +synonym: "joint of limb of inferior member" EXACT [OBOL:automatic] +synonym: "joint of limb of lower extremity" EXACT [OBOL:automatic] +synonym: "joint of lower limb" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "limb joint of hind limb" EXACT [OBOL:automatic] +synonym: "limb joint of hindlimb" EXACT [OBOL:automatic] +synonym: "limb joint of inferior member" EXACT [OBOL:automatic] +synonym: "limb joint of lower extremity" EXACT [OBOL:automatic] +synonym: "lower extremity joint of limb" EXACT [OBOL:automatic] +synonym: "lower extremity limb joint" EXACT [OBOL:automatic] +xref: EMAPA:32635 +xref: http://www.snomedbrowser.com/Codes/Details/304573000 +xref: MA:0000662 +is_a: UBERON:0003657 ! limb joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: part_of UBERON:0002103 ! hindlimb +relationship: fma_set_term FMA:71348 +relationship: part_of UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0003841 +name: autopod joint +def: "A limb joint that is part of an autopod [Automatically generated definition]." [OBOL:automatic] +synonym: "autopod joint of limb" EXACT [OBOL:automatic] +synonym: "autopod limb joint" EXACT [OBOL:automatic] +synonym: "distal free limb segment joint of limb" EXACT [OBOL:automatic] +synonym: "distal free limb segment limb joint" EXACT [OBOL:automatic] +synonym: "joint of limb of autopod" EXACT [OBOL:automatic] +synonym: "joint of limb of distal free limb segment" EXACT [OBOL:automatic] +synonym: "limb joint of autopod" EXACT [OBOL:automatic] +synonym: "limb joint of distal free limb segment" EXACT [OBOL:automatic] +synonym: "paw joint" RELATED [MA:0002715] +xref: EMAPA:35160 +xref: MA:0002715 +is_a: UBERON:0003657 ! limb joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: part_of UBERON:0002470 ! autopod region +relationship: part_of UBERON:0002470 ! autopod region + +[Term] +id: UBERON:0003842 +name: neural tube lumen +alt_id: UBERON:0005713 +def: "An anatomical space that surrounded_by a neural tube." [OBOL:automatic] +synonym: "cavity of neural tube" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "central lumen" RELATED [] +synonym: "lumen of neural tube" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "neural lumen" RELATED [EHDAA:2889] +synonym: "neural tube neural lumen" EXACT [EHDAA2:0001269] +synonym: "neurocoel" RELATED [VHOG:0001119] +synonym: "prosencoel" NARROW [] +xref: AAO:0011073 +xref: EHDAA2:0001269 +xref: EHDAA:2889 +xref: EHDAA:914 +xref: EMAPA:16167 +xref: VHOG:0001119 +xref: XAO:0000252 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0001049 ! neural tube +relationship: luminal_space_of UBERON:0001049 ! neural tube +relationship: part_of UBERON:0001049 ! neural tube + +[Term] +id: UBERON:0003843 +name: dental epithelium +def: "Epithelium that is part of a developing tooth or dental organ." [https://github.com/cerivs/zebrafish-anatomical-ontology/issues/107, ZFA:0005134] +subset: vertebrate_core +synonym: "dental epithelia" EXACT PLURAL [ZFA:0005134] +synonym: "dental epithelium" EXACT [ZFA:0005134] +synonym: "odontogenic epithelium" EXACT [] +synonym: "reduced enamel epithelium" RELATED [BTO:0001723] +synonym: "tooth epithelium" EXACT [] +xref: AAO:0011027 +xref: BTO:0001723 +xref: EMAPA:32903 +xref: http://linkedlifedata.com/resource/umls/id/C1709309 +xref: MA:0003151 +xref: NCIT:C54296 +xref: TAO:0005134 +xref: UMLS:C1709309 {source="ncithesaurus:Odontogenic_Epithelial_Remnants"} +xref: VHOG:0001443 +xref: XAO:0003203 +xref: ZFA:0005134 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0005176 ! tooth enamel organ +relationship: develops_from UBERON:0004362 {notes="epithelium", source="JB"} ! pharyngeal arch 1 +relationship: part_of UBERON:0005176 ! tooth enamel organ + +[Term] +id: UBERON:0003844 +name: upper eyelid epithelium +def: "An epithelium that is part of an upper eyelid [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of superior eyelid" EXACT [OBOL:automatic] +synonym: "epithelial tissue of upper eyelid" EXACT [OBOL:automatic] +synonym: "epithelium of superior eyelid" EXACT [OBOL:automatic] +synonym: "epithelium of upper eyelid" EXACT [OBOL:automatic] +synonym: "superior eyelid epithelial tissue" EXACT [OBOL:automatic] +synonym: "superior eyelid epithelium" EXACT [OBOL:automatic] +synonym: "upper eyelid epithelial tissue" EXACT [OBOL:automatic] +xref: EHDAA2:0002116 +xref: EMAPA:17835 +xref: VHOG:0000638 +is_a: UBERON:0035034 ! eyelid epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001712 ! upper eyelid +relationship: part_of UBERON:0001712 ! upper eyelid + +[Term] +id: UBERON:0003845 +name: lower eyelid epithelium +def: "An epithelium that is part of a lower eyelid [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of inferior eyelid" EXACT [OBOL:automatic] +synonym: "epithelial tissue of lower eyelid" EXACT [OBOL:automatic] +synonym: "epithelium of inferior eyelid" EXACT [OBOL:automatic] +synonym: "epithelium of lower eyelid" EXACT [OBOL:automatic] +synonym: "inferior eyelid epithelial tissue" EXACT [OBOL:automatic] +synonym: "inferior eyelid epithelium" EXACT [OBOL:automatic] +synonym: "lower eyelid epithelial tissue" EXACT [OBOL:automatic] +xref: EHDAA2:0001016 +xref: EMAPA:17832 +xref: VHOG:0000637 +is_a: UBERON:0035034 ! eyelid epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001713 ! lower eyelid +relationship: part_of UBERON:0001713 ! lower eyelid + +[Term] +id: UBERON:0003846 +name: thymus epithelium +def: "An epithelium that is part of a thymus, forming a supporting framework[MP,modified]." [MP:0009544] +subset: pheno_slim +synonym: "epithelial tissue of thymus" EXACT [OBOL:automatic] +synonym: "epithelial tissue of thymus gland" EXACT [OBOL:automatic] +synonym: "epithelium of thymus" EXACT [OBOL:automatic] +synonym: "epithelium of thymus gland" EXACT [OBOL:automatic] +synonym: "thymic epithelial tissue" EXACT [] +synonym: "thymic epithelium" EXACT [BTO:0001836] +synonym: "thymus epithelial tissue" EXACT [OBOL:automatic] +synonym: "thymus gland epithelial tissue" EXACT [OBOL:automatic] +synonym: "thymus gland epithelium" EXACT [OBOL:automatic] +xref: BTO:0001836 +xref: CALOHA:TS-1040 +xref: EHDAA2:0002019 +xref: EMAPA:35864 +xref: http://linkedlifedata.com/resource/umls/id/C1711423 +xref: MA:0000768 +xref: NCIT:C45713 +xref: UMLS:C1711423 {source="ncithesaurus:Thymic_Epithelial_Tissue"} +xref: VHOG:0001426 +xref: ZFA:0005779 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0012275 ! meso-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002370 ! thymus +relationship: contributes_to_morphology_of UBERON:0002370 ! thymus +relationship: part_of UBERON:0002370 ! thymus + +[Term] +id: UBERON:0003847 +name: thyroid artery +def: "A artery that supplies a thyroid gland." [OBOL:automatic] +xref: AAO:0010490 +xref: EHDAA2:0002029 +xref: EHDAA:7372 +xref: EMAPA:18622 +xref: http://linkedlifedata.com/resource/umls/id/C1711424 +xref: MA:0002066 +xref: NCIT:C53020 +xref: UMLS:C1711424 {source="ncithesaurus:Thyroid_Artery"} +xref: VHOG:0001366 +is_a: UBERON:0001637 ! artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0002046 ! thyroid gland +relationship: supplies UBERON:0002046 ! thyroid gland + +[Term] +id: UBERON:0003848 +name: gonadal vein +def: "In medicine, gonadal vein refers to the blood vessel that carrying blood away from the gonad (testis, ovary) toward the heart. Females : ovarian vein Males : testicular vein [WP,unvetted]." [http://en.wikipedia.org/wiki/Gonadal_vein] +synonym: "gonad vein" EXACT [OBOL:automatic] +synonym: "gonada vein" EXACT [OBOL:automatic] +synonym: "vein of gonad" EXACT [OBOL:automatic] +synonym: "vein of gonada" EXACT [OBOL:automatic] +xref: EHDAA2:0000719 +xref: EHDAA:8703 +xref: Gonadal:vein +xref: http://www.snomedbrowser.com/Codes/Details/278192008 +xref: OpenCyc:Mx4rvlWYh5wpEbGdrcN5Y29ycA +xref: VHOG:0001340 +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: attaches_to UBERON:0000991 ! gonad +relationship: attaches_to UBERON:0000991 ! gonad + +[Term] +id: UBERON:0003849 +name: mesencephalic neural crest +def: "A neural crest that has_potential_to_developmentally_contribute_to a midbrain." [OBOL:automatic] +subset: efo_slim +subset: vertebrate_core +synonym: "mesencephalic neural crest" EXACT [ZFA:0000935] +synonym: "neural crest midbrain" EXACT [ZFA:0000935] +xref: EFO:0003591 +xref: EHDAA2:0001101 +xref: EHDAA:360 +xref: TAO:0000935 +xref: VHOG:0000796 +xref: ZFA:0000935 +is_a: UBERON:0002342 ! neural crest +is_a: UBERON:0003099 {source="ZFA"} ! cranial neural crest +intersection_of: UBERON:0002342 ! neural crest +intersection_of: has_potential_to_developmentally_contribute_to UBERON:0001891 ! midbrain +relationship: has_potential_to_developmentally_contribute_to UBERON:0001891 ! midbrain + +[Term] +id: UBERON:0003850 +name: telencephalon neural crest +def: "A neural crest that has_potential_to_developmentally_contribute_to a telencephalon." [OBOL:automatic] +subset: efo_slim +subset: vertebrate_core +synonym: "neural crest telencephalon" EXACT [ZFA:0000812] +xref: EFO:0003574 +xref: RETIRED_EHDAA2:0001991 +xref: TAO:0000812 +xref: VHOG:0000799 +xref: ZFA:0000812 +is_a: UBERON:0002342 ! neural crest +intersection_of: UBERON:0002342 ! neural crest +intersection_of: has_potential_to_developmentally_contribute_to UBERON:0001893 ! telencephalon +relationship: has_potential_to_developmentally_contribute_to UBERON:0001893 ! telencephalon + +[Term] +id: UBERON:0003851 +name: diencephalon neural crest +def: "A neural crest that has_potential_to_developmentally_contribute_to a diencephalon." [OBOL:automatic] +subset: efo_slim +synonym: "diencephalic neural crest" EXACT [ZFA:0000811] +synonym: "future diencephalon neural crest" EXACT [EHDAA2:0000603] +synonym: "neural crest diencephalon" EXACT [ZFA:0000811] +synonym: "neural crest of future diencephalon" EXACT [EMAPA:16518] +xref: EFO:0003573 +xref: EHDAA2:0000603 +xref: EMAPA:16518 +xref: TAO:0000811 +xref: VHOG:0000798 +xref: ZFA:0000811 +is_a: UBERON:0002342 ! neural crest +intersection_of: UBERON:0002342 ! neural crest +intersection_of: has_potential_to_developmentally_contribute_to UBERON:0001894 ! diencephalon +relationship: has_potential_to_developmentally_contribute_to UBERON:0001894 ! diencephalon + +[Term] +id: UBERON:0003852 +name: rhombencephalon neural crest +def: "A neural crest that has_potential_to_developmentally_contribute_to a hindbrain." [OBOL:automatic] +subset: vertebrate_core +synonym: "neural crest hindbrain" EXACT [ZFA:0007063] +synonym: "rhombencephalic neural crest" EXACT [ZFA:0007063] +synonym: "rhombomere neural crest" RELATED [EMAPA:35747] +xref: EHDAA2:0001628 +xref: EHDAA:362 +xref: EMAPA:35747 +xref: TAO:0007063 +xref: VHOG:0001210 +xref: ZFA:0007063 +is_a: UBERON:0002342 ! neural crest +is_a: UBERON:0003099 {source="ZFA"} ! cranial neural crest +intersection_of: UBERON:0002342 ! neural crest +intersection_of: has_potential_to_developmentally_contribute_to UBERON:0002028 ! hindbrain +relationship: has_potential_to_developmentally_contribute_to UBERON:0002028 ! hindbrain + +[Term] +id: UBERON:0003853 +name: spinal cord neural crest +def: "A neural crest that has_potential_to_developmentally_contribute_to a spinal cord." [OBOL:automatic] +synonym: "neural crest spinal cord" EXACT [VHOG:0001006] +synonym: "spinal neural crest" RELATED [VHOG:0001006] +xref: EHDAA:696 +xref: EMAPA:16163 +xref: EMAPA:16881 +xref: VHOG:0001006 +is_a: UBERON:0002342 ! neural crest +intersection_of: UBERON:0002342 ! neural crest +intersection_of: has_potential_to_developmentally_contribute_to UBERON:0002240 ! spinal cord +relationship: has_potential_to_developmentally_contribute_to UBERON:0002240 ! spinal cord + +[Term] +id: UBERON:0003854 +name: spinal cord neural plate +def: "A neural plate that develops_from a future spinal cord." [OBOL:automatic] +synonym: "neural plate of spinal cord" EXACT [OBOL:automatic] +xref: FMA:312957 +xref: TAO:0007021 +xref: VHOG:0000439 +xref: ZFA:0007021 +is_a: UBERON:0003075 ! neural plate +intersection_of: UBERON:0003075 ! neural plate +intersection_of: develops_from UBERON:0006241 ! future spinal cord +relationship: develops_from UBERON:0006241 {source="ZFA"} ! future spinal cord + +[Term] +id: UBERON:0003855 +name: gonad mesenchyme +def: "Mesenchyme that is part of a developing gonad [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "gonada mesenchyme" EXACT [OBOL:automatic] +synonym: "mesenchyme of gonad" EXACT [OBOL:automatic] +synonym: "mesenchyme of gonada" EXACT [OBOL:automatic] +xref: EHDAA:5012 +xref: EMAPA:16858 +xref: EMAPA:17385 +xref: VHOG:0001090 +is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0000991 ! gonad +relationship: part_of UBERON:0000991 ! gonad + +[Term] +id: UBERON:0003856 +name: uncondensed odontogenic mesenchyme +def: "Mesenchyme enclosed by a dental organ that gives rise to an odontogenic papilla." [https://github.com/cerivs/zebrafish-anatomical-ontology/issues/107, https://orcid.org/0000-0002-6601-2165] +subset: vertebrate_core +synonym: "dental mesenchyme" EXACT [ZFA:0005139] +synonym: "dental organ mesenchyme" EXACT [OBOL:automatic] +synonym: "enamel organ mesenchyme" EXACT [OBOL:automatic] +synonym: "tooth enamel organ mesenchyme" EXACT [OBOL:automatic] +synonym: "tooth mesenchyme" EXACT [OBOL:automatic] +xref: EMAPA:32891 +xref: MA:0003152 +xref: TAO:0005139 +xref: VHOG_RETIRED:0001444 +xref: ZFA:0005139 +is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0007529 ! loose mesenchyme tissue +intersection_of: UBERON:0007529 ! loose mesenchyme tissue +intersection_of: part_of UBERON:0008281 ! tooth bud +relationship: adjacent_to UBERON:0005176 ! tooth enamel organ +relationship: part_of UBERON:0008281 ! tooth bud + +[Term] +id: UBERON:0003857 +name: upper eyelid mesenchyme +def: "Mesenchyme that is part of a developing upper eyelid [Automatically generated definition]." [OBOL:automatic] +synonym: "mesenchyme of superior eyelid" EXACT [OBOL:automatic] +synonym: "mesenchyme of upper eyelid" EXACT [OBOL:automatic] +synonym: "superior eyelid mesenchyme" EXACT [OBOL:automatic] +xref: EHDAA2:0002117 +xref: EHDAA:9051 +xref: EMAPA:17836 +xref: VHOG:0001093 +is_a: UBERON:0010330 ! eyelid mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001712 ! upper eyelid +relationship: develops_from UBERON:0000076 {source="cjm"} ! external ectoderm +relationship: part_of UBERON:0001712 ! upper eyelid + +[Term] +id: UBERON:0003858 +name: lower eyelid mesenchyme +def: "Mesenchyme that is part of a developing lower eyelid [Automatically generated definition]." [OBOL:automatic] +synonym: "inferior eyelid mesenchyme" EXACT [OBOL:automatic] +synonym: "mesenchyme of inferior eyelid" EXACT [OBOL:automatic] +synonym: "mesenchyme of lower eyelid" EXACT [OBOL:automatic] +xref: EHDAA2:0001017 +xref: EHDAA:9045 +xref: EMAPA:17833 +xref: VHOG:0001036 +is_a: UBERON:0010330 ! eyelid mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001713 ! lower eyelid +relationship: develops_from UBERON:0000076 {source="EHDAA2"} ! external ectoderm +relationship: part_of UBERON:0001713 ! lower eyelid + +[Term] +id: UBERON:0003859 +name: forelimb mesenchyme +def: "Mesenchyme that is part of a developing forelimb [Automatically generated definition]." [OBOL:automatic] +synonym: "anteriormost limb mesenchyme" EXACT [OBOL:automatic] +synonym: "fore limb mesenchyme" EXACT [OBOL:automatic] +synonym: "mesenchyme of anteriormost limb" EXACT [OBOL:automatic] +synonym: "mesenchyme of fore limb" EXACT [OBOL:automatic] +synonym: "mesenchyme of forelimb" EXACT [OBOL:automatic] +synonym: "mesenchyme of superior member" EXACT [OBOL:automatic] +synonym: "mesenchyme of upper extremity" EXACT [OBOL:automatic] +synonym: "superior member mesenchyme" EXACT [OBOL:automatic] +synonym: "upper extremity mesenchyme" EXACT [OBOL:automatic] +synonym: "wing mesenchyme" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +synonym: "wing mesenchyme" NARROW SENSU [Geisha:syn, NCBITaxon:8782] +xref: EMAPA:32628 +xref: VHOG:0001109 +is_a: UBERON:0009749 ! limb mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0002102 ! forelimb +relationship: part_of UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0003860 +name: hindlimb mesenchyme +def: "Mesenchyme that is part of a developing hindlimb [Automatically generated definition]." [OBOL:automatic] +synonym: "hind limb mesenchyme" EXACT [OBOL:automatic] +synonym: "inferior member mesenchyme" EXACT [OBOL:automatic] +synonym: "lower extremity mesenchyme" EXACT [OBOL:automatic] +synonym: "mesenchyme of hind limb" EXACT [OBOL:automatic] +synonym: "mesenchyme of hindlimb" EXACT [OBOL:automatic] +synonym: "mesenchyme of inferior member" EXACT [OBOL:automatic] +synonym: "mesenchyme of lower extremity" EXACT [OBOL:automatic] +xref: EMAPA:32637 +xref: VHOG:0001074 +is_a: UBERON:0009749 ! limb mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0002103 ! hindlimb +relationship: part_of UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0003861 +name: neural arch +def: "posterior part of a vertebra that consists of a pair of pedicles and a pair of laminae, and supports seven processes: four articular processes, two transverse processes one spinous process[WP]. ZFA: A neural arch encloses the neural canal and typically meets its partner to form a neural spine. ." [http://en.wikipedia.org/wiki/Vertebral_arch] +subset: efo_slim +subset: pheno_slim +subset: vertebrate_core +synonym: "arcus vertebra" EXACT [http://en.wikipedia.org/wiki/Vertebral_arch] +synonym: "arcus vertebrae" EXACT PLURAL [http://en.wikipedia.org/wiki/Vertebral_arch] +synonym: "arcus vertebrae" RELATED LATIN [http://en.wikipedia.org/wiki/Vertebral_arch] +synonym: "arcus vertebrae (vertebralis)" EXACT [FMA:11946] +synonym: "dorsal arcocentrum" EXACT [ZFA:0001066] +synonym: "vertebra dorsal arch" RELATED [MA:0001453] +synonym: "vertebra neural arch" BROAD SENSU [MA:0001453] +xref: AAO:0000725 +xref: EFO:0003618 +xref: FMA:11946 +xref: http://linkedlifedata.com/resource/umls/id/C0223076 +xref: http://www.snomedbrowser.com/Codes/Details/317373001 +xref: MA:0001453 +xref: NCIT:C32138 +xref: OpenCyc:Mx4rwKYHvZwpEbGdrcN5Y29ycA +xref: TAO:0001066 +xref: UMLS:C0223076 {source="ncithesaurus:Arch_of_the_Vertebra"} +xref: Vertebral:arch +xref: VHOG:0001670 +xref: ZFA:0001066 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010358 ! arch of centrum of vertebra +relationship: develops_from UBERON:0006063 ! cartilaginous neural arch + +[Term] +id: UBERON:0003862 +name: pedal digit 4 phalanx +def: "A phalanx that is part of a foot digit 4 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "digit long bone of foot digit 4" EXACT [OBOL:automatic] +synonym: "foot digit 4 digit long bone" EXACT [OBOL:automatic] +synonym: "foot digit 4 long bone of digit" EXACT [OBOL:automatic] +synonym: "foot digit 4 phalanx" EXACT [MA:0001384] +synonym: "foot digit 4 phalanx" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "fourth toe phalanx" EXACT [FMA:32901] +synonym: "hind limb digit 4 phalanx" EXACT [OBOL:accepted] +synonym: "long bone of digit of foot digit 4" EXACT [OBOL:automatic] +synonym: "pedal digit IV phalanx" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "phalanx of foot digit 4" EXACT [OBOL:automatic] +synonym: "phalanx of fourth toe" EXACT [FMA:32901] +xref: EMAPA:19130 +xref: FMA:32901 +xref: http://linkedlifedata.com/resource/umls/id/C1708086 +xref: http://www.snomedbrowser.com/Codes/Details/361804008 +xref: MA:0001384 +xref: NCIT:C52781 +xref: UMLS:C1708086 {source="ncithesaurus:Foot_Digit_4_Phalanx"} +is_a: UBERON:0001449 ! phalanx of pes +is_a: UBERON:0015034 ! pedal digit 4 phalanx endochondral element +intersection_of: UBERON:0003221 ! phalanx +intersection_of: part_of UBERON:0003634 ! pedal digit 4 +relationship: develops_from UBERON:0010683 ! pedal digit 4 phalanx cartilage element + +[Term] +id: UBERON:0003863 +name: pedal digit 5 phalanx +def: "A phalanx that is part of a foot digit 5 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "digit long bone of foot digit 5" EXACT [OBOL:automatic] +synonym: "foot digit 5 digit long bone" EXACT [OBOL:automatic] +synonym: "foot digit 5 long bone of digit" EXACT [OBOL:automatic] +synonym: "foot digit 5 phalanx" EXACT [MA:0001385] +synonym: "foot digit 5 phalanx" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 5 phalanx" EXACT [OBOL:accepted] +synonym: "little toe phalanx" EXACT [FMA:32902] +synonym: "long bone of digit of foot digit 5" EXACT [OBOL:automatic] +synonym: "pedal digit V phalanx" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "phalanx of fifth digit of foot" EXACT [FMA:32902] +synonym: "phalanx of fifth toe" EXACT [FMA:32902] +synonym: "phalanx of foot digit 5" EXACT [OBOL:automatic] +synonym: "phalanx of little toe" EXACT [FMA:32902] +xref: EMAPA:19132 +xref: FMA:32902 +xref: http://linkedlifedata.com/resource/umls/id/C1708088 +xref: http://www.snomedbrowser.com/Codes/Details/361806005 +xref: MA:0001385 +xref: NCIT:C52782 +xref: UMLS:C1708088 {source="ncithesaurus:Foot_Digit_5_Phalanx"} +is_a: UBERON:0001449 ! phalanx of pes +is_a: UBERON:0015035 ! pedal digit 5 phalanx endochondral element +intersection_of: UBERON:0003221 ! phalanx +intersection_of: part_of UBERON:0003635 ! pedal digit 5 +relationship: develops_from UBERON:0010684 ! pedal digit 5 phalanx cartilage element + +[Term] +id: UBERON:0003864 +name: middle phalanx of manus +def: "A middle phalanx that is part of a finger [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "hand middle phalanx" EXACT [MA:0001394] +synonym: "middle manual phalanx" EXACT [] +synonym: "middle phalanx of finger" EXACT [FMA:75817] +synonym: "middle phalanx of hand" EXACT [MA:0001394] +synonym: "middle phalanx of manual digit" EXACT [] +synonym: "phalanx media manus" EXACT LATIN [FMA:75817, FMA:TA] +xref: EMAPA:37306 {source="MA:th"} +xref: FMA:75817 +xref: http://linkedlifedata.com/resource/umls/id/C0223828 +xref: http://www.snomedbrowser.com/Codes/Details/113223004 +xref: http://www.snomedbrowser.com/Codes/Details/371230003 +xref: MA:0001394 +xref: NCIT:C12863 +xref: UMLS:C0223828 {source="ncithesaurus:Middle_Phalanx_of_the_Hand"} +is_a: UBERON:0001436 ! phalanx of manus +is_a: UBERON:0004301 ! middle phalanx +intersection_of: UBERON:0004301 ! middle phalanx +intersection_of: part_of UBERON:0002389 ! manual digit +relationship: distally_connected_to UBERON:0001436 ! phalanx of manus +relationship: proximally_connected_to UBERON:0001436 ! phalanx of manus + +[Term] +id: UBERON:0003865 +name: distal phalanx of manus +def: "A distal phalanx that is part of a finger [Automatically generated definition]." [OBOL:automatic] +comment: This is typically proximally connected to the middle phalanx of manus, except in some cases such as the manual digit 1 (thumb) of many mammals such as humans, where it connects to the proximal phalanx. It always connects to some phalanx, by definition +subset: pheno_slim +synonym: "distal manual phalanx" EXACT [] +synonym: "distal phalanx of finger" EXACT [FMA:75818] +synonym: "distal phalanx of hand" EXACT [] +synonym: "distal phalanx of manual digit" EXACT [] +synonym: "hand distal phalanx" EXACT [MA:0001388] +synonym: "phalanx distalis manus" EXACT LATIN [FMA:75818, FMA:TA] +synonym: "terminal phalanx of hand" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "ungual phalanx of hand" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=67679] +xref: EMAPA:35393 +xref: FMA:75818 +xref: http://linkedlifedata.com/resource/umls/id/C1269782 +xref: http://www.snomedbrowser.com/Codes/Details/182001007 +xref: http://www.snomedbrowser.com/Codes/Details/361782004 +xref: MA:0001388 +xref: NCIT:C52784 +xref: UMLS:C1269782 {source="ncithesaurus:Distal_Phalanx_of_Hand"} +is_a: UBERON:0001436 ! phalanx of manus +is_a: UBERON:0004300 ! distal phalanx +intersection_of: UBERON:0004300 ! distal phalanx +intersection_of: part_of UBERON:0002389 ! manual digit +relationship: part_of UBERON:0009552 ! distal segment of manual digit +relationship: proximally_connected_to UBERON:0001436 ! phalanx of manus + +[Term] +id: UBERON:0003866 +name: middle phalanx of pes +def: "A middle phalanx that is part of a toe [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "foot middle phalanx" EXACT [MA:0001386] +synonym: "middle pedal phalanx" EXACT [] +synonym: "middle phalanx of foot" EXACT [] +synonym: "middle phalanx of toe" EXACT [FMA:75829] +synonym: "phalanx media pedis" EXACT LATIN [FMA:75829, FMA:TA] +xref: EMAPA:37311 {source="MA:th"} +xref: FMA:75829 +xref: http://www.snomedbrowser.com/Codes/Details/83207005 +xref: MA:0001386 +is_a: UBERON:0001449 ! phalanx of pes +is_a: UBERON:0004301 ! middle phalanx +intersection_of: UBERON:0004301 ! middle phalanx +intersection_of: part_of UBERON:0001466 ! pedal digit +relationship: distally_connected_to UBERON:0001449 ! phalanx of pes +relationship: proximally_connected_to UBERON:0001449 ! phalanx of pes + +[Term] +id: UBERON:0003867 +name: distal phalanx of pes +def: "A distal phalanx that is part of a pedal digit [Automatically generated definition]." [OBOL:automatic] +comment: This is typically proximally connected to the middle phalanx of pes, except in some cases such as the pedal digit 1 (big toe) in many mammals such as humans, where it connects to the proximal phalanx. It always connects to some phalanx, by definition +subset: pheno_slim +synonym: "distal pedal phalanx" EXACT [] +synonym: "distal phalanx of foot" EXACT [] +synonym: "distal phalanx of toe" EXACT [FMA:75830] +synonym: "foot distal phalanx" EXACT [MA:0001380] +synonym: "phalanx distalis pedis" EXACT LATIN [FMA:75830, FMA:TA] +synonym: "terminal phalanx of foot" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "terminal phalanx of hindlimb" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "ungual phalanx of foot" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=67679] +synonym: "ungual phalanx of hindlimb" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=67679] +xref: EMAPA:37310 {source="MA:th"} +xref: FMA:75830 +xref: http://linkedlifedata.com/resource/umls/id/C0224026 +xref: http://www.snomedbrowser.com/Codes/Details/361797001 +xref: MA:0001380 +xref: NCIT:C52783 +xref: UMLS:C0224026 {source="ncithesaurus:Distal_Phalanx_of_Foot"} +is_a: UBERON:0001449 ! phalanx of pes +is_a: UBERON:0004300 ! distal phalanx +intersection_of: UBERON:0004300 ! distal phalanx +intersection_of: part_of UBERON:0001466 ! pedal digit +relationship: part_of UBERON:0009553 ! distal segment of pedal digit +relationship: proximally_connected_to UBERON:0001449 ! phalanx of pes + +[Term] +id: UBERON:0003868 +name: proximal phalanx of pes +def: "A proximal phalanx that is part of a pedal digit [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "foot proximal phalanx" EXACT [MA:0001387] +synonym: "phalanx proximalis pedis" EXACT LATIN [FMA:75828, FMA:TA] +synonym: "proximal pedal phalanx" EXACT [] +synonym: "proximal phalanx of foot" EXACT [] +synonym: "proximal phalanx of foot digit" EXACT [] +synonym: "proximal phalanx of hind digit" EXACT [] +synonym: "proximal phalanx of pes" EXACT [] +synonym: "proximal phalanx of toe" EXACT [FMA:75828] +xref: EMAPA:37312 {source="MA:th"} +xref: FMA:75828 +xref: http://linkedlifedata.com/resource/umls/id/C0224020 +xref: http://www.snomedbrowser.com/Codes/Details/85533000 +xref: MA:0001387 +xref: NCIT:C52785 +xref: UMLS:C0224020 {source="ncithesaurus:Proximal_Phalanx_of_Foot"} +is_a: UBERON:0001449 ! phalanx of pes +is_a: UBERON:0004302 ! proximal phalanx +intersection_of: UBERON:0004302 ! proximal phalanx +intersection_of: part_of UBERON:0001466 ! pedal digit +relationship: proximally_connected_to UBERON:0001448 ! metatarsal bone + +[Term] +id: UBERON:0003869 +name: presumptive ganglion +def: "A presumptive structure that has the potential to develop into a ganglion." [OBOL:automatic] +is_a: UBERON:0006598 ! presumptive structure +intersection_of: UBERON:0006598 ! presumptive structure +intersection_of: has_potential_to_develop_into UBERON:0000045 ! ganglion +relationship: has_potential_to_develop_into UBERON:0000045 ! ganglion + +[Term] +id: UBERON:0003874 +name: obsolete presumptive ventricle +is_obsolete: true + +[Term] +id: UBERON:0003876 +name: hippocampal field +def: "a part or parts of the hippocampus that have a particular function" [MGI:csmith, MP:0008262] +subset: non_informative +subset: pheno_slim +synonym: "hippocampal region" RELATED [BAMS:HIP] +synonym: "hippocampus region" RELATED [MA:0002428] +synonym: "hippocampus subdivision" EXACT [FMA:74041] +synonym: "subdivision of hippocampus" EXACT [FMA:74041] +xref: BAMS:Hi/CA +xref: BAMS:HIP +xref: EMAPA:32772 +xref: FMA:74041 +xref: MA:0002428 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +disjoint_from: UBERON:0007688 ! anlage +relationship: contributes_to_morphology_of UBERON:0001954 ! Ammon's horn +relationship: part_of UBERON:0002421 ! hippocampal formation + +[Term] +id: UBERON:0003881 +name: CA1 field of hippocampus +def: "Part of hippocampus proper bounded by CA2 and the subiculum, characterized by pyramidal neurons that receive projections from pyramidal neurons of CA3 via the Schaffer collaterals." [BIRNLEX:1197] +subset: efo_slim +subset: pheno_slim +synonym: "CA1" EXACT [] +synonym: "CA1 field" EXACT [] +synonym: "CA1 field of Ammon's horn" EXACT [] +synonym: "CA1 field of cornu ammonis" EXACT [] +synonym: "CA1 field of hippocampus" EXACT [] +synonym: "CA1 field of the Ammon horn" RELATED [BAMS:CA1] +synonym: "CA1 field of the hippocampus" RELATED LATIN [NeuroNames:183] +synonym: "cornu ammonis 1" EXACT [BIRNLEX:1197] +synonym: "field CA1" RELATED [NeuroNames:183] +synonym: "field CA1 of hippocampus" RELATED [NeuroNames:183] +synonym: "field CA1, Ammon's horn (Lorente de Ns)" RELATED [NeuroNames:183] +synonym: "hippocampus CA1" EXACT [] +synonym: "prosubiculum = distal ca1" EXACT [BIRNLEX:1197] +synonym: "regio i cornus ammonis" EXACT LATIN [FMA:74042, FMA:TA] +synonym: "regio i hippocampi proprii" EXACT LATIN [FMA:74042, FMA:TA] +synonym: "regio superior" EXACT [BIRNLEX:1197] +synonym: "regio superior of the hippocampus" EXACT [FMA:74042] +synonym: "region 1 of Ammon's horn" EXACT [] +synonym: "region CA1" RELATED [NeuroNames:183] +synonym: "region i of ammon's horn" EXACT [FMA:74042] +synonym: "region i of hippocampus proper" EXACT [FMA:74042] +xref: BAMS:CA1 +xref: BIRNLEX:1197 +xref: DHBA:10297 +xref: DMBA:16131 +xref: EFO:0002454 +xref: EMAPA:32768 +xref: FMA:74042 +xref: HBA:12892 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=183 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=183 {source="BIRNLEX:1197"} +xref: http://en.wikipedia.org/wiki/Region_I_of_hippocampus_proper +xref: http://linkedlifedata.com/resource/umls/id/C0694598 +xref: MA:0000950 +xref: MBA:382 +xref: NCIT:C32246 +xref: PBA:10058 +xref: UMLS:C0694598 {source="BIRNLEX:1197"} +xref: UMLS:C0694598 {source="ncithesaurus:CA1_Field_of_the_Cornu_Ammonis"} +is_a: UBERON:0003876 ! hippocampal field + +[Term] +id: UBERON:0003882 +name: CA2 field of hippocampus +def: "Part of hippocampus proper bounded by areas CA3 and CA1, characterized by a narrow layer of large pyramidal cells, similar in size to CA3 pyramidal cells, but which lack the mossy fiber input from the dentate gyrus (adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 460)" [BIRNLEX:1362] +subset: efo_slim +subset: pheno_slim +synonym: "CA2" EXACT [] +synonym: "CA2 field" EXACT [] +synonym: "CA2 field of Ammon's horn" EXACT [] +synonym: "CA2 field of cornu ammonis" EXACT [] +synonym: "CA2 field of hippocampus" EXACT [] +synonym: "CA2 field of the Ammon horn" RELATED [BAMS:CA2] +synonym: "CA2 field of the hippocampus" RELATED [NeuroNames:184] +synonym: "cornu Ammonis 2" RELATED LATIN [NeuroNames:184] +synonym: "field CA2" RELATED [NeuroNames:184] +synonym: "field CA2 of hippocampus" RELATED [NeuroNames:184] +synonym: "field CA2, Ammon's horn (Lorente de Ns)" RELATED [NeuroNames:184] +synonym: "hippocampus CA2" EXACT [] +synonym: "regio ii cornus ammonis" EXACT LATIN [FMA:74044, FMA:TA] +synonym: "regio ii hippocampi proprii" EXACT LATIN [FMA:74044, FMA:TA] +synonym: "region 2 of Ammon's horn" EXACT [] +synonym: "region CA2" RELATED [NeuroNames:184] +synonym: "region II of ammon's horn" EXACT [FMA:74044] +synonym: "region II of hippocampus proper" EXACT [FMA:74044] +xref: BAMS:CA2 +xref: BIRNLEX:1362 +xref: DHBA:10298 +xref: DMBA:16136 +xref: EFO:0002455 +xref: EMAPA:32769 +xref: FMA:74044 +xref: HBA:12893 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=184 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=184 {source="BIRNLEX:1362"} +xref: http://en.wikipedia.org/wiki/Region_II_of_hippocampus_proper +xref: http://linkedlifedata.com/resource/umls/id/C0694599 +xref: MA:0000951 +xref: MBA:423 +xref: NCIT:C32247 +xref: PBA:10063 +xref: UMLS:C0694599 {source="BIRNLEX:1362"} +xref: UMLS:C0694599 {source="ncithesaurus:CA2_Field_of_the_Cornu_Ammonis"} +is_a: UBERON:0003876 ! hippocampal field + +[Term] +id: UBERON:0003883 +name: CA3 field of hippocampus +def: "Part of hippocampus proper bounded by the hilus of the dentate gyrus and area CA2, characterized by large pyramidal cells and a dense projection from dentate gyrus granule cell mossy fibers." [http://neurolex.org/wiki/Category\:CA3] +subset: efo_slim +subset: pheno_slim +synonym: "CA3" EXACT [] +synonym: "CA3" RELATED [http://en.wikipedia.org/wiki/Region_III_of_hippocampus_proper] +synonym: "CA3 field" EXACT [] +synonym: "CA3 field of Ammon's horn" EXACT [] +synonym: "CA3 field of cornu ammonis" EXACT [] +synonym: "CA3 field of hippocampus" EXACT [] +synonym: "CA3 field of the Ammon horn" RELATED [BAMS:CA3] +synonym: "CA3 field of the hippocampus" RELATED [NeuroNames:185] +synonym: "cornu Ammonis 3" RELATED LATIN [NeuroNames:185] +synonym: "field CA3" RELATED [NeuroNames:185] +synonym: "field CA3 of hippocampus" RELATED [NeuroNames:185] +synonym: "field CA3, Ammon's horn (Lorente de Ns)" RELATED [NeuroNames:185] +synonym: "hippocampus CA3" EXACT [] +synonym: "regio hippocampi proprii III" RELATED LATIN [http://en.wikipedia.org/wiki/Region_III_of_hippocampus_proper] +synonym: "regio III cornus ammonis" EXACT LATIN [FMA:74045, FMA:TA] +synonym: "regio III cornus ammonis" RELATED LATIN [http://en.wikipedia.org/wiki/Region_III_of_hippocampus_proper] +synonym: "regio III hippocampi proprii" EXACT LATIN [FMA:74045, FMA:TA] +synonym: "regio inferior" EXACT [BIRNLEX:1204] +synonym: "region 3 of Ammon's horn" EXACT [] +synonym: "region CA3" RELATED [NeuroNames:185] +synonym: "region III of ammon's horn" EXACT [FMA:74045] +synonym: "region III of hippocampus proper" EXACT [FMA:74045] +xref: BAMS:CA3 +xref: BIRNLEX:1204 +xref: DHBA:10299 +xref: DMBA:16141 +xref: EFO:0002456 +xref: EMAPA:32770 +xref: FMA:74045 +xref: HBA:12894 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=185 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=185 {source="BIRNLEX:1204"} +xref: http://en.wikipedia.org/wiki/Region_III_of_hippocampus_proper +xref: http://linkedlifedata.com/resource/umls/id/C0694600 +xref: MA:0000952 +xref: MBA:463 +xref: NCIT:C32248 +xref: PBA:10068 +xref: UMLS:C0694600 {source="ncithesaurus:CA3_Field_of_the_Cornu_Ammonis"} +xref: UMLS:C0694600 {source="BIRNLEX:1204"} +is_a: UBERON:0003876 ! hippocampal field + +[Term] +id: UBERON:0003884 +name: CA4 field of hippocampus +def: "The last of four regions in the cornu ammonis of the hippocampus and is also part of the hilus of the dentate gyrus. This area contains mostly mossy cells that receive inputs from the dentate gyrus and pyramidal cells in the CA3 region and also projects back to the dentate gyrus." [ncithesaurus:CA4_Field_of_the_Cornu_Ammonis] +subset: efo_slim +subset: pheno_slim +synonym: "CA4" EXACT [] +synonym: "CA4 field" EXACT [] +synonym: "CA4 field of Ammon's horn" EXACT [] +synonym: "CA4 field of cornu ammonis" EXACT [] +synonym: "hippocampus CA4" EXACT [] +synonym: "regio IV cornus ammonis" EXACT LATIN [FMA:75741, FMA:TA] +synonym: "regio IV hippocampi proprii" EXACT LATIN [FMA:75741, FMA:TA] +synonym: "region 4 of Ammon's horn" EXACT [] +synonym: "region IV of ammon's horn" EXACT [FMA:75741] +synonym: "region IV of hippocampus proper" EXACT [FMA:75741] +xref: DHBA:10300 +xref: EFO:0002457 +xref: EMAPA:32771 +xref: FMA:75741 +xref: HBA:12895 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=181 +xref: http://en.wikipedia.org/wiki/Region_IV_of_hippocampus_proper +xref: http://linkedlifedata.com/resource/umls/id/C2328406 +xref: MA:0000953 +xref: NCIT:C32249 +xref: PBA:10074 +xref: UMLS:C2328406 {source="ncithesaurus:CA4_Field_of_the_Cornu_Ammonis"} +is_a: UBERON:0003876 ! hippocampal field + +[Term] +id: UBERON:0003885 +name: mesometrium +def: "A mesentery that is part of a uterus [Automatically generated definition]." [OBOL:automatic] +synonym: "mesentery of uterus" RELATED [FMA:19816, http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html, MA:0002931] +xref: EMAPA:35562 +xref: FMA:19816 +xref: http://en.wikipedia.org/wiki/Mesometrium +xref: http://www.snomedbrowser.com/Codes/Details/250172001 +xref: MA:0002931 +is_a: UBERON:0001297 ! serosa of uterus +is_a: UBERON:0002095 ! mesentery +intersection_of: UBERON:0002095 ! mesentery +intersection_of: part_of UBERON:0000995 ! uterus +relationship: part_of UBERON:0012332 ! broad ligament of uterus + +[Term] +id: UBERON:0003886 +name: future coelemic cavity lumen +def: "An anatomical cavity that has the potential to develop into a coelemic cavity lumen." [OBOL:automatic] +subset: grouping_class +subset: non_informative +synonym: "body cavity precursor" RELATED [] +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: has_potential_to_develop_into UBERON:0002323 ! coelemic cavity lumen +relationship: existence_ends_during UBERON:0000111 ! organogenesis stage +relationship: existence_starts_during UBERON:0000109 ! gastrula stage +relationship: has_potential_to_develop_into UBERON:0002323 ! coelemic cavity lumen +relationship: part_of UBERON:0000926 ! mesoderm + +[Term] +id: UBERON:0003887 +name: intraembryonic coelom +def: "The part of the coelom in the embryo between the somatopleuric and splanchnopleuric mesoderm; the principal body cavities of the trunk (thoracic, abdominal, and pelvic) arise from this embryonic part of the coelom" [MGI:anna, MP:0012187] +subset: pheno_slim +synonym: "somatic coelom" EXACT [http://en.wikipedia.org/wiki/Intraembryonic_coelom] +xref: EHDAA:251 +xref: EMAPA:16088 +xref: http://linkedlifedata.com/resource/umls/id/C1512940 +xref: Intraembryonic:coelom +xref: NCIT:C34195 +xref: UMLS:C1512940 {source="ncithesaurus:Intraembryonic_Coelom"} +xref: VHOG:0000316 +is_a: UBERON:0002050 ! embryonic structure +relationship: develops_from UBERON:0003081 {source="Wikipedia"} ! lateral plate mesoderm +relationship: part_of UBERON:0011997 ! coelom + +[Term] +id: UBERON:0003888 +name: extraembryonic coelomic cavity +def: "the fluid-filled spaces formed within the mass of extraembryonic mesoderm that later fuse to become a large extraembryonic cavity" [ISBN:0-12-402035-6, ISBN:1405118660, MP:0011200] +subset: pheno_slim +synonym: "chorion cavity" EXACT [EHDAA2:0000246] +synonym: "chorionic cavity" EXACT [EHDAA2:0000246, https://sourceforge.net/p/obo/mammalian-phenotype-requests/1454] +synonym: "exocoelomic cavity" EXACT [VHOG:0001671] +synonym: "exocoelomic cavity" RELATED [VHOG:0001671] +synonym: "extra-embryonic celom" RELATED [FMA:63943] +synonym: "extra-embryonic coelomic cavity" RELATED [EMAPA:16081] +synonym: "extraembryonic celom" EXACT [FMA:63943] +synonym: "extraembryonic celom" RELATED [FMA:63943] +synonym: "extraembryonic coelomic cavity" RELATED [VHOG:0001671] +xref: EHDAA2:0000246 +xref: EHDAA:146 +xref: EMAPA:16081 +xref: Extraembryonic:coelom +xref: FMA:63943 +xref: http://linkedlifedata.com/resource/umls/id/C1517055 +xref: http://www.snomedbrowser.com/Codes/Details/296586008 +xref: http://www.snomedbrowser.com/Codes/Details/362843009 +xref: NCIT:C34165 +xref: UMLS:C1517055 {source="ncithesaurus:Extraembryonic_Coelom"} +xref: VHOG:0001671 +is_a: UBERON:0012466 ! extraembryonic cavity +relationship: develops_from UBERON:0003886 ! future coelemic cavity lumen + +[Term] +id: UBERON:0003889 +name: fallopian tube +def: "Initial section of the oviduct through which the ova pass from the ovary to the uterus" [http://orcid.org/0000-0002-6601-2165, MGI:smb, MP:0003574] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "fallopian tubes" RELATED [] +synonym: "female paramesonephric duct" RELATED [EHDAA2:0000504] +synonym: "mammalian oviduct" EXACT [https://sourceforge.net/p/geneontology/ontology-requests/8397/] +synonym: "paramesonephric duct of female" RELATED [EMAPA:35660] +synonym: "salpinges" BROAD PLURAL [] +synonym: "salpinx" BROAD [] +synonym: "tuba uterina" RELATED LATIN [http://en.wikipedia.org/wiki/Fallopian_tube] +synonym: "uterine tube (sensu Mammalia)" EXACT [] +xref: CALOHA:TS-0732 +xref: EHDAA2:0000504 +xref: EMAPA:18984 +xref: EMAPA:35660 +xref: EV:0100112 +xref: Fallopian:tube +xref: FMA:18245 +xref: GAID:365 +xref: galen:FallopianTube +xref: http://linkedlifedata.com/resource/umls/id/C0015560 +xref: http://www.snomedbrowser.com/Codes/Details/181463001 +xref: MA:0000385 +xref: MESH:D005187 +xref: NCIT:C12403 +xref: OpenCyc:Mx4rvViVeZwpEbGdrcN5Y29ycA +xref: UMLS:C0015560 {source="ncithesaurus:Fallopian_Tube"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0013515 ! subdivision of oviduct +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0013515 ! subdivision of oviduct +intersection_of: develops_from UBERON:0003890 ! Mullerian duct +intersection_of: part_of UBERON:0000993 ! oviduct +relationship: connects UBERON:0000995 ! uterus +relationship: connects UBERON:0003984 ! uterine tube infundibulum +relationship: develops_from UBERON:0003890 ! Mullerian duct +relationship: in_lateral_side_of UBERON:0003975 {source="FMA-abduced-lr"} ! internal female genitalia +relationship: part_of UBERON:0002355 ! pelvic region of trunk +relationship: part_of UBERON:0003975 ! internal female genitalia + +[Term] +id: UBERON:0003890 +name: Mullerian duct +alt_id: UBERON:0005318 +def: "paired ducts of the embryo that run down the lateral sides of the urogenital ridge and terminate at the mullerian eminence in the primitive urogenital sinus. In the female, they will develop to form the fallopian tubes, uterus, and the upper portion of the vagina; in the male, they are lost. These ducts are made of tissue of mesodermal origin[WP]. develops either by lengthwise splitting of the archinephric duct (in chondrichthyans and some amphibians) or by a elongated invagination of the coelomic epithelium (other vertebrates) In males, the oviducts regress. The cranial end of the oviduct maintains an opening into the coelom (which primitively may have been the anteriormost coelomic funnels connecting the nephrocoel with the coelom). This opening is the ostium tubae[USM]." [GO:0061205, http://en.wikipedia.org/wiki/Paramesonephric_duct, http://www.usm.maine.edu/bio/courses/bio205/bio205_26_sex.html] +subset: pheno_slim +synonym: "ductus paramesonephricus" EXACT [] +synonym: "early paramesonephric duct" NARROW [EHDAA2:0004048] +synonym: "Muellerian duct" EXACT [] +synonym: "Müllerian duct" EXACT [] +synonym: "paramesonephric duct" EXACT [EMAPA:27665] +xref: AAO:0010141 +xref: EHDAA2:0004048 +xref: EMAPA:27665 +xref: GAID:1309 +xref: http://linkedlifedata.com/resource/umls/id/C0026732 +xref: http://www.snomedbrowser.com/Codes/Details/308802006 +xref: MESH:A16.254.570 +xref: NCIT:C13260 +xref: Paramesonephric:duct +xref: RETIRED_EHDAA2:0001399 +xref: UMLS:C0026732 {source="ncithesaurus:Mullerian_Duct"} +xref: VHOG:0001199 +xref: XAO:0000330 +is_a: UBERON:0000025 ! tube +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0015212 ! lateral structure +relationship: develops_from UBERON:0003064 {source="Wikipedia"} ! intermediate mesoderm +relationship: in_lateral_side_of UBERON:0000922 ! embryo +relationship: part_of UBERON:0000922 ! embryo + +[Term] +id: UBERON:0003891 +name: stroma +def: "Connective, non-functional supportive framework of a biological cell, tissue, or organ. Contrast with parenchyma." [http://orcid.org/0000-0002-6601-2165] +subset: grouping_class +synonym: "stromal connective tissue" RELATED [] +xref: FMA:81494 +xref: http://linkedlifedata.com/resource/umls/id/C0927195 +xref: NCIT:C67387 +xref: UMLS:C0927195 {source="ncithesaurus:Stroma_Connective_Tissue"} +is_a: UBERON:0000064 ! organ part +relationship: composed_primarily_of UBERON:0002384 ! connective tissue + +[Term] +id: UBERON:0003893 +name: capsule +def: "A cover or envelope partly or wholly surrounding a structure. Examples: egg shell, articular capsules, renal capsules[WP]." [http://en.wikipedia.org/wiki/Capsule_(anatomy)] +comment: see also: protective structure surrounding some species of bacteria and fungi. Note that FMA has classes such as Articular capsule that are not subtypes of Capsule (which is undefined in FMA). GO has 'capsule' which is a fungal structure, and 'external encapsulating structure' which is restricted to cells +subset: grouping_class +subset: non_informative +xref: Capsule:(anatomy) +xref: EHDAA:4739 +xref: EHDAA:9061 +xref: FMA:85272 +xref: galen:Capsule +is_a: UBERON:0000158 ! membranous layer + +[Term] +id: UBERON:0003894 +name: liver primordium +def: "A small endodermal thickening in the foregut adjacent to the transverse septum. Invaginates forming the hepatic diverticulum." [ISBN:3211492755] +subset: efo_slim +subset: pheno_slim +subset: vertebrate_core +synonym: "embryological hepatic plate" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "hepatic plate" RELATED [EHDAA2:0000744] +synonym: "liver bud" RELATED INCONSISTENT [XAO:0003266, ZFA:0000124] +synonym: "liver endoderm" RELATED [EFO:0002577] +synonym: "primordium of the liver" EXACT [ncithesaurus:Primordium_of_the_Liver] +xref: AAO:0011058 +xref: BTO:0003391 +xref: EFO:0002577 +xref: EFO:0003428 +xref: EHDAA2:0000744 +xref: EHDAA:973 +xref: EMAPA:16847 +xref: http://linkedlifedata.com/resource/umls/id/C0734013 +xref: http://linkedlifedata.com/resource/umls/id/C1514451 +xref: NCIT:C34277 +xref: TAO:0000124 +xref: UMLS:C0734013 {source="ncithesaurus:Hepatic_Cord"} +xref: UMLS:C1514451 {source="ncithesaurus:Primordium_of_the_Liver"} +xref: XAO:0003266 +xref: ZFA:0000124 +is_a: UBERON:0000485 {source="EHDAA2"} ! simple columnar epithelium +is_a: UBERON:0001048 {source="XAO"} ! primordium +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0006598 ! presumptive structure +is_a: UBERON:0009497 ! epithelium of foregut-midgut junction +intersection_of: UBERON:0001048 ! primordium +intersection_of: has_potential_to_develop_into UBERON:0002107 ! liver +disjoint_from: UBERON:0005452 ! hepatic cord +relationship: develops_from UBERON:0001041 {notes="ventral foregut endoderm", source="Zaret 1996"} ! foregut +relationship: has_potential_to_develop_into UBERON:0002107 ! liver +relationship: part_of UBERON:0009550 {source="EHDAA2"} ! endoderm of foregut-midgut junction + +[Term] +id: UBERON:0003895 +name: hypaxial myotome region +def: "Portion of myotome that is ventral to the horizontal septum" [ISBN:0073040584] +synonym: "body wall muscle" RELATED [XAO:0003228] +synonym: "hypaxial myotome region" EXACT [ZFA:0001085] +xref: TAO:0001085 +xref: ZFA:0001085 +is_a: UBERON:0001134 ! skeletal muscle tissue +relationship: part_of UBERON:0003082 ! myotome +relationship: ventral_to UBERON:0003901 ! horizontal septum + +[Term] +id: UBERON:0003896 +name: obsolete muscle of body wall +def: "Any muscle organ that is part of a body wall [Automatically generated definition]." [OBOL:automatic] +comment: obsoleted as it grouped together a worm-specific structure (BTO) with the vertebrate structure (which develops from the myotome) +synonym: "wall muscle" RELATED [BTO:0001863] +is_obsolete: true +consider: ANISEED:1235296 +consider: BTO:0001863 +consider: UBERON:0004462 +consider: WBbt:0005813 + +[Term] +id: UBERON:0003897 +name: axial muscle +def: "One of the skeletal muscles of the head and neck, spine, and ribs." [HP:0003327] +subset: pheno_slim +xref: EHDAA:5982 +xref: EMAPA:18167 +xref: MA:0003153 +xref: RETIRED_EHDAA2:0000160 +xref: TAO:0001954 +is_a: UBERON:0014892 ! skeletal muscle organ +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: attaches_to_part_of UBERON:0005944 ! axial skeleton plus cranial skeleton +intersection_of: part_of UBERON:0013701 ! main body axis +relationship: attaches_to_part_of UBERON:0005944 ! axial skeleton plus cranial skeleton +relationship: part_of UBERON:0013700 ! axial musculature + +[Term] +id: UBERON:0003898 +name: skeletal muscle tissue of trunk +def: "A portion of skeletal muscle tissue in the trunk." [http://orcid.org/0000-0002-6601-2165] +synonym: "skeletal muscle of torso" EXACT [OBOL:automatic] +synonym: "skeletal muscle tissue of torso" EXACT [OBOL:automatic] +synonym: "skeletal muscle tissue of trunk" EXACT [OBOL:automatic] +synonym: "torso skeletal muscle" EXACT [OBOL:automatic] +synonym: "torso skeletal muscle tissue" EXACT [OBOL:automatic] +synonym: "trunk skeletal muscle" EXACT [OBOL:automatic] +synonym: "trunk skeletal muscle tissue" EXACT [OBOL:automatic] +xref: http://www.snomedbrowser.com/Codes/Details/244848007 +is_a: UBERON:0001134 ! skeletal muscle tissue +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0002100 ! trunk +relationship: part_of UBERON:0004479 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! musculature of trunk +relationship: part_of UBERON:0013700 ! axial musculature + +[Term] +id: UBERON:0003900 +name: epaxial myotome region +def: "Portion of myotome that is dorsal to the horizontal septum" [ISBN:0073040584] +synonym: "epaxial myotome regions" EXACT PLURAL [ZFA:0001084] +xref: TAO:0001084 +xref: ZFA:0001084 +is_a: UBERON:0001134 ! skeletal muscle tissue +relationship: dorsal_to UBERON:0003901 ! horizontal septum +relationship: part_of UBERON:0003082 ! myotome + +[Term] +id: UBERON:0003901 +name: horizontal septum +def: "A logitudinal sheet of continuous connective tissue partition developing at the apex of the chevron-shaped myotome and separating dorsal (epaxial) and ventral (hypaxial) body wall muscle masses; each is destined to become, respectively, the epaxial and hyopaxial musculature." [ISBN:0073040584, ZFA:0000671] +subset: efo_slim +synonym: "horizontal myoseptum" EXACT [ZFA:0000671] +synonym: "horizontal septum of vertebra" RELATED [] +xref: EFO:0003555 +xref: TAO:0000671 +xref: ZFA:0000671 +is_a: UBERON:0003037 ! septum +relationship: adjacent_to UBERON:0003895 ! hypaxial myotome region +relationship: adjacent_to UBERON:0003900 ! epaxial myotome region +relationship: composed_primarily_of UBERON:0002384 ! connective tissue +relationship: part_of UBERON:0000383 ! musculature of body + +[Term] +id: UBERON:0003902 +name: retinal neural layer +def: "The part of the retina that contains neurons and photoreceptor cells[GO]." [GO:0003407] +subset: pheno_slim +subset: vertebrate_core +synonym: "neural layer of retina" EXACT [FMA:58628] +synonym: "neural retina" EXACT [XAO:0003216, ZFA:0000046] +synonym: "neural retinal epithelium" RELATED [MA:000027] +synonym: "neuroretina" EXACT [ZFA:0000046] +synonym: "stratum nervosum (retina)" EXACT [FMA:58628] +synonym: "stratum nervosum retinae" EXACT LATIN [FMA:58628, FMA:TA] +xref: AAO:0011095 +xref: BTO:0000929 +xref: CALOHA:TS-0685 +xref: EHDAA2:0001253 +xref: EHDAA:4763 +xref: EMAPA:17171 +xref: EMAPA:18590 +xref: FMA:58628 +xref: http://linkedlifedata.com/resource/umls/id/C1518263 +xref: MA:0000277 +xref: NCIT:C33166 +xref: TAO:0000046 +xref: UMLS:C1518263 {source="ncithesaurus:Neural_Retina"} +xref: VHOG:0000535 +xref: XAO:0003216 +xref: ZFA:0000046 +is_a: UBERON:0001781 ! layer of retina +intersection_of: UBERON:0001781 ! layer of retina +intersection_of: immediate_transformation_of UBERON:0005425 ! presumptive neural retina +relationship: developmentally_induced_by UBERON:0005426 ! lens vesicle +relationship: develops_from UBERON:0005425 ! presumptive neural retina +relationship: immediate_transformation_of UBERON:0005425 {source="Bgee:AN"} ! presumptive neural retina + +[Term] +id: UBERON:0003903 +name: bursa of Fabricius +def: "An epithelial and lymphoid organ that develops as a dorsal diverticulum of the proctodeal region of the cloaca in birds. The luminal (interior) surface of the bursa is plicated with as many as 15 primary and 7 secondary plicae or folds. These plicae have hundreds of bursal follicles containing follicle-associated epithelial cells, lymphocytes, macrophages, and plasma cells. Lymphoid stem cells migrate from the fetal liver to the bursa during ontogeny. In the bursa, these stem cells acquire the characteristics of mature, immunocompetent B cells[WP]. The bursa is an organ found in birds involved in B cell differentiation[GO]." [GO:0048540, http://en.wikipedia.org/wiki/Bursa_of_Fabricius] +subset: organ_slim +xref: BTO:0001699 +xref: GAID:1205 +xref: http://en.wikipedia.org/wiki/Bursa_of_Fabricius +xref: http://www.snomedbrowser.com/Codes/Details/86689007 +xref: MESH:D002060 +is_a: UBERON:0004177 ! hemopoietic organ +is_a: UBERON:0011510 ! cloacal bursa +is_a: UBERON:0013765 ! digestive system element + +[Term] +id: UBERON:0003904 +name: bursal plica +def: "Follicle containing part of bursa of Fabricius. The luminal (interior) surface of the bursa is plicated with as many as 15 primary and 7 secondary plicae or folds. These plicae have hundreds of bursal follicles containing follicle-associated epithelial cells, lymphocytes, macrophages, and plasma cells. Lymphoid stem cells migrate from the fetal liver to the bursa during ontogeny. In the bursa, these stem cells acquire the characteristics of mature, immunocompetent B cells[WP]." [http://orcid.org/0000-0002-6601-2165] +synonym: "bursal fold" EXACT [] +synonym: "bursal plicae" EXACT PLURAL [] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0003903 ! bursa of Fabricius + +[Term] +id: UBERON:0003905 +name: bursal follicle +def: "Follicle within the plicae of bursa of Fabricius." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0003904 ! bursal plica + +[Term] +id: UBERON:0003906 +name: cardiac jelly +def: "Portion of extracellular matrix between the myocardium and the endocardium. The cardiac jelly plays a central role in the septation of the heart and comprises most of the thickness of the heart wall at early stages, but disappears as the heart differentiates." [ZFA:0001318] +subset: pheno_slim +subset: vertebrate_core +synonym: "heart cardiac jelly" EXACT [VHOG:0000936] +xref: EHDAA:1271 +xref: EHDAA:1279 +xref: EHDAA:1922 +xref: EHDAA:1930 +xref: EHDAA:426 +xref: EHDAA:442 +xref: EHDAA:450 +xref: EHDAA:458 +xref: EHDAA:466 +xref: EHDAA:474 +xref: EHDAA:772 +xref: EHDAA:780 +xref: EHDAA:788 +xref: EHDAA:800 +xref: EHDAA:808 +xref: EMAPA:32687 +xref: http://linkedlifedata.com/resource/umls/id/C1516293 +xref: NCIT:C34115 +xref: RETIRED_EHDAA2:0000212 +xref: TAO:0001318 +xref: UMLS:C1516293 {source="ncithesaurus:Cardiac_Jelly"} +xref: VHOG:0000936 +xref: XAO:0004120 +xref: ZFA:0001318 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: adjacent_to UBERON:0002165 ! endocardium +relationship: adjacent_to UBERON:0002349 ! myocardium +relationship: part_of UBERON:0000948 ! heart + +[Term] +id: UBERON:0003907 +name: left atrioventricular canal +def: "An atrioventricular canal that is in the left side of a atrioventricular region." [OBOL:automatic] +synonym: "left atrio-ventricular canal" EXACT [EHDAA2:0000935] +synonym: "left AVC" EXACT [] +xref: EHDAA2:0000935 +xref: EHDAA:5336 +xref: FMA:71123 +is_a: UBERON:0002087 ! atrioventricular canal +intersection_of: UBERON:0002087 ! atrioventricular canal +intersection_of: in_left_side_of UBERON:0011820 ! atrioventricular region +relationship: in_left_side_of UBERON:0011820 ! atrioventricular region + +[Term] +id: UBERON:0003908 +name: right atrioventricular canal +def: "An atrioventricular canal that is in the right side of a atrioventricular region." [OBOL:automatic] +synonym: "right atrio-ventricular canal" EXACT [EHDAA2:0001719] +synonym: "right AVC" EXACT [] +xref: EHDAA2:0001719 +xref: EHDAA:5338 +xref: FMA:71122 +is_a: UBERON:0002087 ! atrioventricular canal +intersection_of: UBERON:0002087 ! atrioventricular canal +intersection_of: in_right_side_of UBERON:0011820 ! atrioventricular region +relationship: in_right_side_of UBERON:0011820 ! atrioventricular region + +[Term] +id: UBERON:0003909 +name: sinusoid +def: "small blood vessel similar to a capillary but with a fenestrated endothelium. Sinusoids are found in the liver, lymphoid tissue, endocrine organs, and hematopoietic organs such as the bone marrow and the spleen. Sinusoids found within terminal villi of the placenta are not comparable to these; they possess a continuous endothelium and complete basal lamina[WP]." [http://en.wikipedia.org/wiki/Sinusoid_(blood_vessel)] +subset: vertebrate_core +synonym: "endothelium of irregular blood filled space" RELATED [] +synonym: "sinusoidal blood vessel" EXACT [] +synonym: "sinusoidal blood vessel endothelium" EXACT [ZFA:0005261] +synonym: "sinusoidal capillary" RELATED [http://www.medilexicon.com/medicaldictionary.php?t=13986] +synonym: "sinusoidal endothelium" RELATED [] +xref: FMA:63131 +xref: http://en.wikipedia.org/wiki/Sinusoid_(blood_vessel) +xref: http://www.snomedbrowser.com/Codes/Details/340163004 +xref: TAO:0005261 +xref: ZFA:0005261 +is_a: UBERON:2005260 {source="Wikipedia", source="ZFA"} ! fenestrated capillary + +[Term] +id: UBERON:0003910 +name: splenic sinusoid +def: "wide vessels in the spleen that drain into trabecular veins[WP]." [http://en.wikipedia.org/wiki/Red_pulp#Sinusoids] +synonym: "sinusoid of red pulp of spleen" RELATED [FMA:63199] +synonym: "sinusoidal blood vessel of spleen" EXACT [OBOL:automatic] +xref: FMA:63199 +xref: http://www.snomedbrowser.com/Codes/Details/9081000 +xref: Sinusoids +is_a: UBERON:0003497 ! abdomen blood vessel +is_a: UBERON:0003909 ! sinusoid +intersection_of: UBERON:0003909 ! sinusoid +intersection_of: part_of UBERON:0001250 ! red pulp of spleen +relationship: part_of UBERON:0001250 ! red pulp of spleen +relationship: present_in_taxon NCBITaxon:10114 {source="http://www.informatics.jax.org/greenbook/chapters/chapter13.shtml"} + +[Term] +id: UBERON:0003911 +name: choroid plexus epithelium +def: "The epithelial component of the choroid plexus. Consists of cuboidal epithelial cells surrounding a core of capillaries and loose connective tissue." [http://en.wikipedia.org/wiki/Choroid_plexus, UBERON:cjm] +synonym: "choroid plexus epithelial tissue" EXACT [OBOL:automatic] +synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] +synonym: "epithelial tissue of choroid plexus" EXACT [OBOL:automatic] +synonym: "epithelium of choroid plexus" EXACT [FMA:242811] +xref: EMAPA:36608 +xref: FMA:242811 +xref: http://linkedlifedata.com/resource/umls/id/C1516506 +xref: MA:0000824 +xref: NCIT:C42079 +xref: UMLS:C1516506 {source="ncithesaurus:Choroid_Plexus_Epithelium"} +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001886 ! choroid plexus +relationship: part_of UBERON:0001886 ! choroid plexus + +[Term] +id: UBERON:0003912 +name: chitinous tooth +def: "tooth-like structure composed of chitin." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0003913 ! tooth-like structure + +[Term] +id: UBERON:0003913 +name: tooth-like structure +def: "hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food." [http://orcid.org/0000-0002-6601-2165] +comment: see dermal denticle +subset: grouping_class +synonym: "tooth-like organ" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: HAO:0001019 +is_a: UBERON:0004765 ! skeletal element + +[Term] +id: UBERON:0003914 +name: epithelial tube +def: "Epithelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system." [GO:0060562, http://www.ncbi.nlm.nih.gov/pubmed/12526790] +synonym: "epithelial or endothelial tube" EXACT [] +xref: AEO:0000114 +xref: EHDAA2:0003114 +xref: FBbt:00007474 +is_a: UBERON:0000025 ! tube +is_a: UBERON:0000483 ! epithelium + +[Term] +id: UBERON:0003915 +name: endothelial tube +def: "Any endothelium that has the quality of being cylindrical [Automatically generated definition]." [OBOL:automatic] +is_a: UBERON:0001986 ! endothelium +is_a: UBERON:0003914 ! epithelial tube + +[Term] +id: UBERON:0003916 +name: fat pad +def: "A mass of closely packed fat cells (adipose tissue) surrounded by fibrous tissue septa[TMD]." [BTO:0000444, GO:0060613, http://medical-dictionary.thefreedictionary.com/fat+pad] +subset: pheno_slim +synonym: "fat body" RELATED [FMA:58616] +xref: BTO:0000444 +xref: EMAPA:35340 +xref: FMA:58616 +xref: MA:0002481 +is_a: UBERON:0001013 ! adipose tissue + +[Term] +id: UBERON:0003917 +name: arthropod fat body +def: "An insect gland dorsal to the insect gut, with a function analogous to that of the vertebrate liver. It is a storage organ for fats, glycogen and protein and is a major site of intermediary metabolism." [GO:0007503] +subset: efo_slim +synonym: "fat body" EXACT SENSU [FBbt:00005066] +synonym: "fat body sensu invertebrata" RELATED [EFO:0000810] +xref: BTO:0000442 +xref: EFO:0000810 +xref: FBbt:00005066 +xref: GAID:1213 +xref: MESH:D005216 +xref: MIAA:0000096 +xref: TADS:0000321 +xref: TGMA:0001856 +is_a: UBERON:0000062 ! organ + +[Term] +id: UBERON:0003918 +name: kidney mesenchyme +def: "Kidney mesenchyme is the tissue made up of loosely connected mesenchymal cells in the kidney[GO]." [GO:0072074] +subset: pheno_slim +synonym: "mesenchyme of kidney" EXACT [] +is_a: UBERON:0003104 ! mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: has_potential_to_develop_into UBERON:0002113 ! kidney +relationship: has_potential_to_develop_into UBERON:0002113 ! kidney + +[Term] +id: UBERON:0003919 +name: obsolete mesenchyme of adult kidney +is_obsolete: true + +[Term] +id: UBERON:0003920 +name: venous blood vessel +def: "A blood vessel that carries blood from the capillaries toward the heart" [http://www.thefreedictionary.com/venous+blood+vessel] +comment: Compare to: vein +synonym: "segment of venous tree organ" EXACT [FMA:86188] +synonym: "venous tree organ segment" EXACT [FMA:86188] +xref: EMAPA:35932 +xref: FMA:86188 +xref: MA:0000066 +is_a: UBERON:0001981 ! blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0004582 ! venous system +relationship: part_of UBERON:0004582 ! venous system + +[Term] +id: UBERON:0003921 +name: pancreas primordium +def: "embryonic structure that develops into pancreatic bud." [http://en.wikipedia.org/wiki/Pancreas#Embryological_development] +subset: efo_slim +subset: vertebrate_core +synonym: "pancreatic anlage" RELATED [ZFA:0000254] +synonym: "pancreatic endoderm" RELATED [EFO:0002579] +synonym: "pancreatic primordium" EXACT [] +synonym: "primordial pancreas" RELATED [FMA:79792] +xref: EFO:0002579 +xref: EFO:0003434 +xref: EHDAA2:0001382 +xref: EHDAA:2163 +xref: EMAPA:17066 +xref: FMA:79792 +xref: TAO:0000254 +xref: XAO:0001101 +xref: ZFA:0000254 +is_a: UBERON:0001048 ! primordium +is_a: UBERON:0006598 ! presumptive structure +intersection_of: UBERON:0001048 ! primordium +intersection_of: has_potential_to_develop_into UBERON:0001264 ! pancreas +relationship: develops_from UBERON:0000925 {source="Wikipedia"} ! endoderm +relationship: has_potential_to_develop_into UBERON:0001264 ! pancreas +relationship: part_of UBERON:0007026 ! presumptive gut + +[Term] +id: UBERON:0003922 +name: pancreatic epithelial bud +def: "The embryonic pancreas develops from two separate anlagen in the foregut epithelium, one dorsal and two ventral pancreatic buds[PMID]." [http://en.wikipedia.org/wiki/Pancreatic_bud, http://www.ncbi.nlm.nih.gov/pubmed/16417468] +subset: efo_slim +synonym: "pancreas epithelium" RELATED [EMAPA:35645] +synonym: "pancreatic anlage" RELATED [] +synonym: "pancreatic bud" EXACT [ZFA:0001390] +synonym: "pancreatic buds" EXACT PLURAL [TAO:0001390] +xref: EFO:0003470 +xref: EMAPA:35645 +xref: http://linkedlifedata.com/resource/umls/id/C1283285 +xref: http://www.snomedbrowser.com/Codes/Details/360398004 +xref: NCIT:C34242 +xref: Pancreatic:bud +xref: TAO:0001390 +xref: UMLS:C1283285 {source="ncithesaurus:Pancreatic_Bud"} +xref: ZFA:0001390 +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac +relationship: develops_from UBERON:0001041 {source="Embryological_development"} ! foregut +relationship: develops_from UBERON:0001555 ! digestive tract +relationship: develops_from UBERON:0002114 {exception="zebrafish", source="Pancreatic:bud"} ! duodenum +relationship: develops_from UBERON:0009497 {source="EHDAA2-inferred"} ! epithelium of foregut-midgut junction +relationship: part_of UBERON:0003921 {source="EHDAA2"} ! pancreas primordium + +[Term] +id: UBERON:0003923 +name: dorsal pancreatic bud +def: "pancreatic bud that gives rise to the accessory pancreatic duct." [http://en.wikipedia.org/wiki/Pancreatic_bud] +subset: efo_slim +subset: vertebrate_core +synonym: "dorsal pancreas anlage" RELATED [] +synonym: "dorsal pancreatic anlage" RELATED [] +synonym: "pancreas dorsal primordium duct bud" EXACT [EHDAA2:0001385] +synonym: "pancreas primordium dorsal bud" EXACT [] +synonym: "posterior pancreatic anlage" RELATED [] +synonym: "posterior pancreatic bud" RELATED [] +synonym: "primary pancreatic bud" EXACT [XAO:0000467] +xref: AAO:0011031 +xref: EFO:0003465 +xref: EHDAA2:0001385 +xref: EMAPA:17067 +xref: http://www.snomedbrowser.com/Codes/Details/361435005 +xref: Pancreatic:bud +xref: TAO:0001370 +xref: VHOG:0001428 +xref: XAO:0000467 +xref: ZFA:0001370 +is_a: UBERON:0003922 ! pancreatic epithelial bud +relationship: develops_from UBERON:0001045 {source="XAO"} ! midgut +relationship: part_of UBERON:0010375 {source="EHDAA2"} ! pancreas dorsal primordium + +[Term] +id: UBERON:0003924 +name: ventral pancreatic bud +def: "pancreatic bud that gives rise to the major pancreatic duct." [http://en.wikipedia.org/wiki/Pancreatic_bud] +subset: efo_slim +subset: vertebrate_core +synonym: "anterior pancreatic anlage" RELATED [] +synonym: "anterior pancreatic bud" RELATED [] +synonym: "pancreas primordium ventral bud" EXACT [] +synonym: "pancreas ventral primordium duct bud" EXACT [EHDAA2:0001389] +synonym: "ventral pancreas anlage" RELATED [] +synonym: "ventral pancreatic anlage" RELATED [] +xref: AAO:0011111 +xref: EFO:0003464 +xref: EHDAA2:0001389 +xref: EMAPA:17256 +xref: http://www.snomedbrowser.com/Codes/Details/361437002 +xref: Pancreatic:bud +xref: TAO:0001369 +xref: VHOG:0001429 +xref: XAO:0001103 +xref: ZFA:0001369 +is_a: UBERON:0003922 ! pancreatic epithelial bud +relationship: develops_from UBERON:0008835 {source="http://www.ncbi.nlm.nih.gov/pubmed/16417468", source="WP"} ! hepatic diverticulum +relationship: part_of UBERON:0010376 {source="EHDAA2"} ! pancreas ventral primordium + +[Term] +id: UBERON:0003925 +name: photoreceptor inner segment layer +def: "Layer of the retina composed of the inner segments of the photoreceptor cells." [ZFIN:curator] +subset: vertebrate_core +synonym: "photoreceptor inner segment layers" RELATED PLURAL [ZFA:0001465] +synonym: "retina photoreceptor layer inner segment" EXACT [MA:0002471] +xref: EMAPA:35687 +xref: MA:0002471 +xref: TAO:0001465 +xref: VHOG:0001172 +xref: ZFA:0001465 +is_a: UBERON:0001781 ! layer of retina +relationship: adjacent_to UBERON:0001788 ! outer limiting layer of retina +relationship: part_of UBERON:0001787 {source="MA"} ! photoreceptor layer of retina + +[Term] +id: UBERON:0003926 +name: photoreceptor outer segment layer +subset: vertebrate_core +synonym: "photoreceptor outer segment layers" RELATED PLURAL [ZFA:0001466] +synonym: "retina photoreceptor layer outer segment" EXACT [MA:0002472] +xref: EMAPA:35688 +xref: MA:0002472 +xref: TAO:0001466 +xref: VHOG:0001173 +xref: ZFA:0001466 +is_a: UBERON:0001781 ! layer of retina +relationship: adjacent_to UBERON:0001782 ! pigmented layer of retina +relationship: part_of UBERON:0001787 {source="MA"} ! photoreceptor layer of retina + +[Term] +id: UBERON:0003927 +name: obsolete macula lagena +def: "This term was obsoleted as it was previously defined midleadingly as 'A macula that is part of a cochlea'." [https://orcid.org/0000-0002-6601-2165] +is_obsolete: true +consider: ZFA:0000116 + +[Term] +id: UBERON:0003928 +name: digestive system duct +def: "A duct that is part of a digestive system [Automatically generated definition]." [OBOL:automatic] +synonym: "duct of digestive system" EXACT [OBOL:automatic] +synonym: "duct of gastrointestinal system" EXACT [OBOL:automatic] +synonym: "gastrointestinal system duct" EXACT [OBOL:automatic] +xref: TAO:0005162 +xref: ZFA:0005162 +is_a: UBERON:0000058 ! duct +intersection_of: UBERON:0000058 ! duct +intersection_of: part_of UBERON:0001007 ! digestive system +relationship: part_of UBERON:0001007 ! digestive system + +[Term] +id: UBERON:0003929 +name: digestive tract epithelium +def: "An epithelium that lines the lumen of the digestive tract." [http://orcid.org/0000-0002-6601-2165] +synonym: "alimentary tract epithelium" RELATED [OBOL:automatic] +synonym: "digestive tract epithelial tissue" EXACT [OBOL:automatic] +synonym: "epithelial tissue of digestive tract" EXACT [OBOL:automatic] +synonym: "epithelial tissue of gut" EXACT [OBOL:automatic] +synonym: "epithelium of digestive tract" EXACT [OBOL:automatic] +synonym: "epithelium of gut" EXACT [OBOL:automatic] +synonym: "gastrodermis" EXACT SENSU [BGEE:ANN, NCBITaxon:6073] +synonym: "gut epithelial tissue" EXACT [OBOL:automatic] +synonym: "gut epithelium" EXACT [EHDAA2:0004567, MA:0003201, ZFA:0005123] +xref: BTO:0000956 +xref: EHDAA2:0004567 +xref: EMAPA:32928 +xref: http://linkedlifedata.com/resource/umls/id/C0836205 +xref: MA:0003201 +xref: NCIT:C12963 +xref: TAO:0005123 +xref: UMLS:C0836205 {source="ncithesaurus:Gut_Epithelium"} +xref: XAO:0003200 +xref: ZFA:0005123 +is_a: UBERON:0000483 ! epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001555 ! digestive tract +relationship: part_of UBERON:0001555 ! digestive tract + +[Term] +id: UBERON:0003930 +name: atrioventricular canal endocardium +def: "Endocardium that is part of the atrioventricular canal[ZFA,vetted]." [ZFA:0001616] +synonym: "AV canal endocardium" EXACT [OBOL:automatic] +synonym: "AVC endocardium" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "endocardium of atrioventricular canal" EXACT [OBOL:automatic] +synonym: "endocardium of AV canal" EXACT [OBOL:automatic] +xref: TAO:0002170 +xref: XAO:0004124 +xref: ZFA:0001616 +is_a: UBERON:0002165 ! endocardium +intersection_of: UBERON:0002165 ! endocardium +intersection_of: part_of UBERON:0002087 ! atrioventricular canal +relationship: part_of UBERON:0002087 ! atrioventricular canal + +[Term] +id: UBERON:0003931 +name: diencephalic white matter +alt_id: UBERON:0023148 +def: "White matter that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] +subset: vertebrate_core +synonym: "diencephalic tract/commissure" EXACT [ZFA:0000338] +synonym: "diencephalic tracts and commissures" EXACT PLURAL [TAO:0000338] +synonym: "predominantly white regional part of diencephalon" EXACT [BIRNLEX:1678] +synonym: "white matter of diencephalon" EXACT [FMA:83931] +xref: BIRNLEX:1678 +xref: FMA:83931 +xref: TAO:0000338 +xref: ZFA:0000338 +is_a: UBERON:0019261 ! white matter of forebrain +intersection_of: UBERON:0002316 ! white matter +intersection_of: part_of UBERON:0001894 ! diencephalon +relationship: part_of UBERON:0001894 ! diencephalon + +[Term] +id: UBERON:0003932 +name: cartilage element of chondrocranium +def: "A cartilage element of chondrocranium. Example: neurocranial trabecula." [https://orcid.org/0000-0002-6601-2165] +subset: efo_slim +synonym: "cartilage of chondrocranium" EXACT [OBOL:accepted] +synonym: "cartilaginous element of chondrocranium" EXACT [OBOL:accepted] +synonym: "chondrocranium cartilage" EXACT [ZFA:0001461] +synonym: "neurocranium cartilage" EXACT [ZFA:0001461] +xref: EFO:0003690 +xref: TAO:0001461 +xref: ZFA:0001461 +is_a: UBERON:0003933 ! cranial cartilage +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0002241 ! chondrocranium +relationship: part_of UBERON:0002241 ! chondrocranium + +[Term] +id: UBERON:0003933 +name: cranial cartilage +def: "A cartilage element that is part of the cranial skeleton." [https://orcid.org/0000-0002-6601-2165, ZFA:0001458] +synonym: "cartilage of cranium" EXACT [OBOL:automatic] +synonym: "cranial cartilages" RELATED PLURAL [ZFA:0001458] +synonym: "cranium cartilage" EXACT [OBOL:automatic] +xref: TAO:0001458 +xref: ZFA:0001458 +is_a: UBERON:0007844 ! cartilage element +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0010323 ! cranial skeletal system +relationship: part_of UBERON:0010323 ! cranial skeletal system + +[Term] +id: UBERON:0003934 +name: mesenchyme pectoral fin +def: "Mesenchyme that is part of a developing pectoral fin [Automatically generated definition]." [OBOL:automatic] +subset: efo_slim +synonym: "mesenchyme of pectoral fin" EXACT [OBOL:automatic] +synonym: "mesenchyme pectoral fins" RELATED PLURAL [ZFA:0001000] +synonym: "pectoral fin mesenchyme" EXACT [OBOL:automatic] +xref: EFO:0003604 +xref: TAO:0001000 +xref: ZFA:0001000 +is_a: UBERON:0003104 ! mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0000151 ! pectoral fin +relationship: part_of UBERON:0000151 ! pectoral fin + +[Term] +id: UBERON:0003935 +name: mesenchyme pelvic fin +def: "Mesenchyme that is part of a developing pelvic fin [Automatically generated definition]." [OBOL:automatic] +synonym: "mesenchyme of pelvic fin" EXACT [OBOL:automatic] +synonym: "mesenchyme pelvic fins" RELATED PLURAL [ZFA:0001449] +synonym: "pelvic fin mesenchyme" EXACT [OBOL:automatic] +xref: TAO:0001449 +xref: ZFA:0001449 +is_a: UBERON:0003104 ! mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0000152 ! pelvic fin +relationship: part_of UBERON:0000152 ! pelvic fin + +[Term] +id: UBERON:0003936 +name: postoptic commissure +subset: efo_slim +synonym: "POC" EXACT [ZFA:0000059] +synonym: "post optic commissure" EXACT [ZFA:0000059] +synonym: "post-optic commissure" EXACT [ZFA:0000059] +xref: EFO:0003478 +xref: HBA:9371 +xref: MBA:174 +xref: TAO:0000059 +xref: ZFA:0000059 +is_a: UBERON:0011590 ! commissure of diencephalon +relationship: part_of UBERON:0003931 ! diencephalic white matter + +[Term] +id: UBERON:0003937 +name: reproductive gland +def: "Any of the organized aggregations of cells that function as secretory or excretory organs and are associated with reproduction." [MP:0000653] +subset: organ_slim +subset: pheno_slim +synonym: "genitalia gland" EXACT [OBOL:automatic] +synonym: "gland of genitalia" EXACT [MP:0000653] +synonym: "gland of reproductive system" EXACT [OBOL:automatic] +synonym: "reproductive gland" EXACT [MA:0001751] +synonym: "reproductive system gland" EXACT [OBOL:automatic] +synonym: "sex gland" EXACT [MP:0000653] +xref: MA:0001751 +is_a: UBERON:0002530 ! gland +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0000990 ! reproductive system + +[Term] +id: UBERON:0003938 +name: sensory dissociation area +def: "The area of the parietal lobe that integrates tactile and visual stimuli" [MP:0000796] +subset: pheno_slim +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010000 ! multicellular anatomical structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0001872 ! parietal lobe +relationship: part_of UBERON:0001872 ! parietal lobe + +[Term] +id: UBERON:0003939 +name: transverse gyrus of Heschl +alt_id: UBERON:0022860 +def: "The area of the temporal lobe concerned with hearing[MP]. The transverse temporal gyri (also called Heschl's gyri or Heschl's convolutions) are found in the area of primary auditory cortex in the superior temporal gyrus of the human brain, occupying Brodmann areas 41 and 42. It is the first cortical structure to process incoming auditory information. Anatomically, the transverse temporal gyri are distinct in that they run mediolaterally (towards the center of the brain) rather than dorsiventrally (front to back) as all other temporal lobe gyri run. The Heschl's gyri are named after Richard L. Heschl." [http://en.wikipedia.org/wiki/Transverse_temporal_gyrus, MP:0000803] +subset: pheno_slim +synonym: "gyri temporales transversi" RELATED LATIN [http://en.wikipedia.org/wiki/Transverse_temporal_gyrus] +synonym: "Heshl's gyrus" EXACT [https://github.com/obophenotype/uberon/issues/609] +synonym: "transverse temporal cortex" RELATED [BIRNLEX:1389] +synonym: "transverse temporal gyri" RELATED PLURAL [http://en.wikipedia.org/wiki/Transverse_temporal_gyrus] +synonym: "transverse temporal gyrus" EXACT [http://en.wikipedia.org/wiki/Transverse_temporal_gyrus] +xref: BIRNLEX:1389 +xref: FMA:273671 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1520 +xref: http://en.wikipedia.org/wiki/Transverse_temporal_gyrus +xref: http://www.snomedbrowser.com/Codes/Details/314159008 +is_a: UBERON:0000200 ! gyrus +relationship: contributes_to_morphology_of UBERON:0001393 ! auditory cortex +relationship: part_of UBERON:0001393 ! auditory cortex + +[Term] +id: UBERON:0003941 +name: cerebellum anterior vermis +def: "The anterior portion of the narrow middle zone between the two hemispheres of the cerebellum that is located anterior to the primary fissure" [MP:0000867] +subset: pheno_slim +synonym: "anterior cerebellum vermis" EXACT [MA:0002969] +synonym: "anterior lobe vermis" RELATED [FMA:72255] +synonym: "anterior vermis of cerebellum" EXACT [FMA:72255] +synonym: "part of vermal region" EXACT [FMA:72255] +synonym: "vermis lobus anterior" EXACT LATIN [FMA:72255, FMA:TA] +synonym: "vermis of anterior lobe" EXACT [FMA:72255] +synonym: "vermis of anterior lobe of cerebellum" EXACT [FMA:72255] +synonym: "vermis of the anterior lobe of the cerebellum" EXACT [BIRNLEX:1185] +xref: BIRNLEX:1185 +xref: FMA:72255 +xref: HBA:4699 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=656 +xref: MA:0002969 +is_a: UBERON:0004720 ! cerebellar vermis +intersection_of: UBERON:0004720 ! cerebellar vermis +intersection_of: part_of UBERON:0002131 ! anterior lobe of cerebellum +disjoint_from: UBERON:0004009 {source="lexical"} ! cerebellum posterior vermis +relationship: contributes_to_morphology_of UBERON:0002131 ! anterior lobe of cerebellum +relationship: part_of UBERON:0002131 ! anterior lobe of cerebellum + +[Term] +id: UBERON:0003942 +name: somatic sensory system +alt_id: UBERON:0014511 +def: "The sensory system for the sense of touch and pain." [NLXANAT:090818] +subset: pheno_slim +synonym: "somatic sensory system" EXACT [] +synonym: "somatosensory system" EXACT [NLXANAT:090818] +synonym: "system for detection of somatic senses" EXACT [] +xref: EMAPA:37954 {source="MA:th"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2887 +xref: NLXANAT:090818 +xref: Somatosensory:system +is_a: UBERON:0001032 ! sensory system +intersection_of: UBERON:0001032 ! sensory system +intersection_of: part_of UBERON:0000012 ! somatic nervous system +relationship: contributes_to_morphology_of UBERON:0000012 ! somatic nervous system +relationship: part_of UBERON:0000012 ! somatic nervous system + +[Term] +id: UBERON:0003943 +name: fourth lumbar dorsal root ganglion +def: "The group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the fourth lumbar vertebra" [MP:0001019] +subset: defined_by_ordinal_series +subset: pheno_slim +synonym: "forth lumbar dorsal root ganglion" EXACT [BIRNLEX:2626] +synonym: "fourth lumbar dorsal root ganglion" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "fourth lumbar spinal ganglion" EXACT [FMA:6338] +synonym: "L4 dorsal root ganglion" EXACT [MP:0001019] +synonym: "L4 ganglion" RELATED [] +xref: BIRNLEX:2626 +xref: EMAPA:25167 +xref: FMA:6338 +xref: http://linkedlifedata.com/resource/umls/id/C0501716 +xref: UMLS:C0501716 {source="BIRNLEX:2626"} +is_a: UBERON:0002836 {source="FMA"} ! lumbar dorsal root ganglion + +[Term] +id: UBERON:0003945 +name: somatic motor system +def: "The neural tissue involved in the transmission of motor signals" [MP:0001051] +subset: pheno_slim +xref: EMAPA:37953 {source="MA:th"} +is_a: UBERON:0010000 ! multicellular anatomical structure +relationship: part_of UBERON:0000012 ! somatic nervous system + +[Term] +id: UBERON:0003946 +name: placenta labyrinth +def: "The placental layers where embryonic blood vessels are surrounded by trophoblast cells and maternal blood" [MP:0001716] +subset: pheno_slim +synonym: "labyrinthine layer" EXACT [GO:0060713] +synonym: "labyrinthine layer of placenta" EXACT [GO:0060713] +synonym: "placental labyrinth" EXACT [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: contributes_to_morphology_of UBERON:0001987 ! placenta +relationship: part_of UBERON:0001987 ! placenta + +[Term] +id: UBERON:0003947 +name: brain ventricle/choroid plexus +def: "The brain ventricles or their associated choroid plexuses" [MP:0002200] +subset: pheno_slim +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010000 ! multicellular anatomical structure +union_of: UBERON:0001886 ! choroid plexus +union_of: UBERON:0004086 ! brain ventricle +relationship: contributes_to_morphology_of UBERON:0000955 ! brain +relationship: part_of UBERON:0000955 ! brain + +[Term] +id: UBERON:0003948 +name: blood-air barrier +def: "The membrane between the capillary blood and alveolar air, comprised of the alveolar epithelium and the capillary epithelium and their adherent basement membranes and epithelial cell cytoplasm" [MP:0002324] +subset: pheno_slim +xref: MESH:D015824 +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: adjacent_to UBERON:0000178 ! blood +relationship: part_of UBERON:0002048 ! lung + +[Term] +id: UBERON:0003949 +name: tubal tonsil +def: "The lymph tissue associated with the pharyngeal opening of the auditory tube" [MP:0002386] +subset: pheno_slim +synonym: "auditory tube lymph gland" EXACT [FMA:54975] +synonym: "eustachian amygdala" EXACT [FMA:54975] +synonym: "Gerlach's tonsil" EXACT [FMA:54975] +synonym: "Gerlach's tubal tonsil" EXACT [FMA:54975] +xref: FMA:54975 +xref: http://www.snomedbrowser.com/Codes/Details/143319002 +xref: Tubal:tonsil +is_a: UBERON:0002372 ! tonsil + +[Term] +id: UBERON:0003950 +name: inner ear canal +def: "The tubular ducts of the inner ear" [MP:0002729] +subset: pheno_slim +xref: EMAPA:37882 {source="MA:th"} +is_a: UBERON:0000464 ! anatomical space +relationship: contributes_to_morphology_of UBERON:0001846 ! internal ear +relationship: part_of UBERON:0001846 ! internal ear + +[Term] +id: UBERON:0003951 +name: ocular fundus +def: "The posterior concave interior of the eye, consisting of the retina, the choroid, the posterior segment of the sclera, the optic disk, and blood vessels, visible by an ophthalmoscope" [http://en.wikipedia.org/wiki/Fundus_(eye), MP:0002864] +subset: pheno_slim +synonym: "eye fundus" EXACT [] +synonym: "fundus" EXACT [HP:0001098] +synonym: "fundus oculi" EXACT [] +synonym: "fundus of eye" EXACT [] +xref: EMAPA:37916 {source="MA:th"} +xref: Fundus:(eye) +xref: GAID:908 +xref: galen:FundusOculi +xref: http://linkedlifedata.com/resource/umls/id/C0740422 +xref: http://www.snomedbrowser.com/Codes/Details/362519003 +xref: MESH:D005654 +xref: NCIT:C13378 +xref: RETIRED_EHDAA2:0000583 +xref: UMLS:C0740422 {source="ncithesaurus:Fundus"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: contributes_to_morphology_of UBERON:0001802 ! posterior segment of eyeball +relationship: part_of UBERON:0001802 ! posterior segment of eyeball + +[Term] +id: UBERON:0003952 +name: anterior stroma of cornea +def: "The anterior segment of the lamellated connective tissue layer of the cornea" [MP:0003093] +subset: pheno_slim +synonym: "anterior stroma" BROAD [MP:0003093] +synonym: "cornea anterior stroma" EXACT [MP:0003093] +xref: EMAPA:37414 {source="MA:th"} +is_a: UBERON:0003566 ! head connective tissue +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: in_anterior_side_of UBERON:0001777 ! substantia propria of cornea +disjoint_from: UBERON:0003953 {source="lexical"} ! posterior stroma of cornea +relationship: contributes_to_morphology_of UBERON:0001777 ! substantia propria of cornea +relationship: in_anterior_side_of UBERON:0001777 ! substantia propria of cornea +relationship: part_of UBERON:0001777 ! substantia propria of cornea + +[Term] +id: UBERON:0003953 +name: posterior stroma of cornea +def: "The posterior segment of the lamellated connective tissue layer of the cornea" [MP:0003094] +subset: pheno_slim +synonym: "cornea posterior stroma" EXACT [MP:0003094] +synonym: "posterior stroma" BROAD [MP:0003094] +xref: EMAPA:37415 {source="MA:th"} +is_a: UBERON:0003566 ! head connective tissue +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: in_posterior_side_of UBERON:0001777 ! substantia propria of cornea +relationship: contributes_to_morphology_of UBERON:0001777 ! substantia propria of cornea +relationship: in_posterior_side_of UBERON:0001777 ! substantia propria of cornea +relationship: part_of UBERON:0001777 ! substantia propria of cornea + +[Term] +id: UBERON:0003954 +name: squamoparietal suture +def: "The articulation of the squamous portion of the temporal bones with the parietal bones[MP]. The squamosal suture arches backward from the pterion and connects the temporal squama with the lower border of the parietal: this suture is continuous behind with the short, nearly horizontal parietomastoid suture, which unites the mastoid process of the temporal with the region of the mastoid angle of the parietal[WP]." [http://en.wikipedia.org/wiki/Squamosal_suture, MP:0003844] +subset: pheno_slim +synonym: "squamo-parietal suture" EXACT [MP:0003844] +synonym: "squamoparietal suture of skull" EXACT [] +synonym: "squamosal suture" RELATED [http://en.wikipedia.org/wiki/Squamosal_suture] +synonym: "squamous suture" RELATED [http://en.wikipedia.org/wiki/Squamosal_suture] +synonym: "squamous suture of skull" RELATED [FMA:52946] +synonym: "sutura squamosa cranii" EXACT LATIN [http://en.wikipedia.org/wiki/Squamosal_suture] +xref: EMAPA:19228 +xref: FMA:52946 +xref: http://www.snomedbrowser.com/Codes/Details/136248004 +xref: http://www.snomedbrowser.com/Codes/Details/334174000 +xref: Squamosal:suture +is_a: UBERON:0003685 ! cranial suture +intersection_of: UBERON:0003685 ! cranial suture +intersection_of: connects UBERON:0000210 ! tetrapod parietal bone +intersection_of: connects UBERON:0001695 ! squamous part of temporal bone +relationship: connects UBERON:0000210 ! tetrapod parietal bone +relationship: connects UBERON:0001695 ! squamous part of temporal bone +relationship: continuous_with UBERON:0010155 ! parietomastoid suture + +[Term] +id: UBERON:0003955 +name: molar crown +def: "The part of a molar that is covered by enamel" [MP:0003932] +subset: pheno_slim +synonym: "crown of molar tooth" EXACT [FMA:85301] +synonym: "molar tooth crown" EXACT [FMA:85301] +synonym: "molar tooth tooth crown" EXACT [OBOL:automatic] +synonym: "tooth crown of molar tooth" EXACT [OBOL:automatic] +xref: EMAPA:37910 {source="MA:th"} +xref: FMA:85301 +is_a: UBERON:0003675 ! tooth crown +intersection_of: UBERON:0003675 ! tooth crown +intersection_of: part_of UBERON:0003655 ! molar tooth +relationship: contributes_to_morphology_of UBERON:0003655 ! molar tooth +relationship: part_of UBERON:0003655 ! molar tooth + +[Term] +id: UBERON:0003956 +name: aqueous drainage system +def: "The structures associated with drainage of the aqueous humor from the eye, that include the trabecular meshwork, Schlemm's canal, the uveoscleral network, and the aqueous veins" [MP:0005198] +subset: pheno_slim +xref: EMAPA:37427 {source="MA:th"} +is_a: UBERON:0000467 ! anatomical system +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001768 ! uvea + +[Term] +id: UBERON:0003957 +name: Bruch's membrane +def: "A transparent, nearly structureless innermost layer of the choroid in contact with the pigmented layer of the retina." [https://github.com/obophenotype/uberon/issues/14, MP:0005239] +subset: pheno_slim +subset: vertebrate_core +synonym: "basal lamina of choroid" RELATED [FMA:58438] +synonym: "Bruch membrane" EXACT [MESH:A09.371.894.223.250] +synonym: "Bruch's basal membrane" EXACT [FMA:58438] +synonym: "lamina basalis (choroid)" EXACT [FMA:58438] +synonym: "lamina basilis" BROAD [FMA:58438] +synonym: "lamina choroideae basalis" EXACT LATIN [FMA:58438, FMA:TA] +synonym: "vitreous lamina" EXACT [ZFA:0005562] +xref: Bruch's:membrane +xref: EMAPA:37450 {source="MA:th"} +xref: FMA:58438 +xref: GAID:914 +xref: http://www.snomedbrowser.com/Codes/Details/280652000 +xref: MESH:D016570 +xref: ZFA:0005562 +is_a: UBERON:0000476 {source="ZFA"} ! acellular anatomical structure +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: adjacent_to UBERON:0001782 ! pigmented layer of retina +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/gkoutos +relationship: part_of UBERON:0013399 ! blood vessel layer of choroid + +[Term] +id: UBERON:0003958 +name: long bone epiphyseal ossification zone +def: "The layer of the epiphyseal plate where new bone matrix is deposited" [MP:0006399] +subset: pheno_slim +xref: EMAPA:37896 {source="MA:th"} +is_a: UBERON:0005055 ! zone of long bone +relationship: part_of UBERON:0002516 ! epiphyseal plate + +[Term] +id: UBERON:0003959 +name: rete testis +def: "An anastomosing network of delicate tubules located in the hilum of the testicle (mediastinum testis) that carries sperm from the seminiferous tubules to the vasa efferentia[WP]." [http://en.wikipedia.org/wiki/Rete_testis, MP:0006416] +subset: pheno_slim +synonym: "Haller's rete" EXACT [FMA:19834] +xref: EMAPA:18332 +xref: FMA:19834 +xref: GAID:399 +xref: http://linkedlifedata.com/resource/umls/id/C0035278 +xref: http://www.snomedbrowser.com/Codes/Details/279617009 +xref: MA:0003013 +xref: MESH:D012152 +xref: NCIT:C33467 +xref: Rete:testis +xref: UMLS:C0035278 {source="ncithesaurus:Rete_Testis"} +is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: channels_from UBERON:0001343 ! seminiferous tubule of testis +relationship: channels_into UBERON:0006946 ! efferent duct +relationship: develops_from UBERON:0005297 {source="Wikipedia"} ! testis sex cord +relationship: part_of UBERON:0005051 ! mediastinum testis + +[Term] +id: UBERON:0003960 +name: styloid process of temporal bone +def: "slender needle-like pointed projection that runs downward and slightly forward from the base of the inferior surface of the petrous portion of the temporal bone where it joins the tympanic portion; it gives attachment to the styloglossus, stylohyoid, and stylopharyngeus muscles and the stylohyoid and stylomandibular ligaments" [http://en.wikipedia.org/wiki/Temporal_styloid_process, MP:0008023] +comment: Disease notes: Eagle's syndrome +subset: pheno_slim +synonym: "processus styloideus" EXACT LATIN [FMA:52877, FMA:TA] +synonym: "processus styloideus ossis temporalis" EXACT [http://en.wikipedia.org/wiki/Temporal_styloid_process] +synonym: "processus styloideus ossis temporalis" RELATED LATIN [http://en.wikipedia.org/wiki/Temporal_styloid_process] +synonym: "styloid process" EXACT [FMA:52877] +synonym: "styloid process of petrous part of temporal bone" EXACT [FMA:52877] +synonym: "temporal styloid process" EXACT [http://en.wikipedia.org/wiki/Temporal_styloid_process] +xref: EMAPA:36320 +xref: FMA:52877 +xref: http://en.wikipedia.org/wiki/Temporal_styloid_process +xref: http://www.snomedbrowser.com/Codes/Details/138874009 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: contributes_to_morphology_of UBERON:0001678 ! temporal bone +relationship: develops_from UBERON:0004368 {source="MP-implied-by-def"} ! Reichert's cartilage +relationship: part_of UBERON:0001678 ! temporal bone +relationship: part_of UBERON:0008895 {source="ISBN:0073040584"} ! splanchnocranium + +[Term] +id: UBERON:0003961 +name: cingulum of brain +def: "The white matter fiber bundle that projects from the cingulate gyrus to the entorhinal cortex in the brain" [MP:0008232] +subset: pheno_slim +synonym: "cingulum" BROAD [] +synonym: "cingulum bundle" EXACT [BAMS:cg] +synonym: "cingulum of telencephalon" RELATED [FMA:260761] +synonym: "neuraxis cingulum" RELATED [FMA:260761] +xref: BAMS:cg +xref: DHBA:10572 +xref: EMAPA:37828 {source="MA:th"} +xref: FMA:260761 +xref: FMA:83869 +xref: HBA:9240 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1445 +xref: http://www.snomedbrowser.com/Codes/Details/369084007 +xref: MBA:940 +is_a: UBERON:0007702 ! tract of brain +disjoint_from: UBERON:0017295 ! cingulum of tooth +relationship: contributes_to_morphology_of UBERON:0003544 ! brain white matter +relationship: part_of UBERON:0003544 ! brain white matter + +[Term] +id: UBERON:0003962 +name: pterygopalatine ganglion +def: "The small parasympathetic ganglion that supplies nerve fibers to the lacrimal, nasal, palatine and pharyngeal glands" [http://en.wikipedia.org/wiki/Pterygopalatine_ganglion, MP:0008314] +subset: pheno_slim +synonym: "g. pterygopalatinum" RELATED LATIN [http://en.wikipedia.org/wiki/Pterygopalatine_ganglion] +synonym: "Meckel ganglion" EXACT [MP:0008314] +synonym: "Meckel's ganglion" EXACT [FMA:6965] +synonym: "nasal ganglion" EXACT [MP:0008314] +synonym: "palatine ganglion" EXACT [MP:0008314] +synonym: "pterygopalatine ganglia" EXACT [MP:0008314] +synonym: "sphenopalatine ganglion" EXACT [MP:0008314] +synonym: "sphenopalatine parasympathetic ganglion" EXACT [EHDAA2:0001889] +xref: BAMS:GptVII +xref: EHDAA2:0001889 +xref: EMAPA:36275 +xref: FMA:6965 +xref: http://www.snomedbrowser.com/Codes/Details/280364004 +xref: Pterygopalatine:ganglion +is_a: UBERON:0001808 ! parasympathetic ganglion +relationship: develops_from UBERON:0010128 ! future pterygopalatine ganglion +relationship: immediate_transformation_of UBERON:0010128 {evidence="definitional"} ! future pterygopalatine ganglion + +[Term] +id: UBERON:0003963 +name: otic ganglion +def: "The ganglion that supplies nerve fibers to the parotid gland" [http://en.wikipedia.org/wiki/Otic_ganglion, MP:0008315] +subset: pheno_slim +synonym: "Arnold's ganglion" EXACT [FMA:6967] +synonym: "ganglion oticum" RELATED LATIN [http://en.wikipedia.org/wiki/Otic_ganglion] +synonym: "otic parasympathetic ganglion" EXACT [EHDAA2:0001335] +xref: BAMS:GoIX +xref: EHDAA2:0001335 +xref: EHDAA:6706 +xref: EMAPA:36274 +xref: FMA:6967 +xref: http://www.snomedbrowser.com/Codes/Details/279283005 +xref: Otic:ganglion +is_a: UBERON:0001701 ! glossopharyngeal ganglion +is_a: UBERON:0001808 ! parasympathetic ganglion +intersection_of: UBERON:0001714 ! cranial ganglion +intersection_of: extends_fibers_into UBERON:0001649 ! glossopharyngeal nerve +intersection_of: innervates UBERON:0001831 ! parotid gland +relationship: innervates UBERON:0001831 ! parotid gland + +[Term] +id: UBERON:0003964 +name: prevertebral ganglion +def: "the sympathetic ganglia located in front of the vertebral column and are associated with the major branches of the abdominal aorta; these include the celiac, aorticorenal, superior and inferior mesenteric ganglia" [ISBN:0-683-40008-8, MP:0008316] +subset: pheno_slim +synonym: "collateral ganglia" RELATED PLURAL [http://en.wikipedia.org/wiki/Prevertebral_ganglia] +synonym: "collateral ganglion" EXACT [FMA:5892] +synonym: "pre-aortic ganglia" RELATED PLURAL [http://en.wikipedia.org/wiki/Prevertebral_ganglia] +synonym: "preaortic ganglia" RELATED PLURAL [http://en.wikipedia.org/wiki/Prevertebral_ganglia] +synonym: "prevertebral ganglion" RELATED [http://en.wikipedia.org/wiki/Prevertebral_ganglia] +synonym: "prevertebral plexuses" RELATED PLURAL [http://en.wikipedia.org/wiki/Prevertebral_ganglia] +synonym: "previsceral ganglion" EXACT [FMA:5892] +synonym: "three great gangliated plexuses" RELATED PLURAL [http://en.wikipedia.org/wiki/Prevertebral_ganglia] +xref: FMA:5892 +xref: MA:0003101 +xref: Prevertebral:ganglia +is_a: UBERON:0001806 ! sympathetic ganglion +relationship: ventral_to UBERON:0001130 ! vertebral column + +[Term] +id: UBERON:0003965 +name: sympathetic afferent fiber +def: "The fibers that conduct sensory nerve impulses from the viscera through the posterior dorsal roots into the spinal cord" [MP:0008319] +subset: pheno_slim +xref: http://en.wikipedia.org/wiki/General_visceral_afferent_fibers +is_a: UBERON:0006134 ! nerve fiber +relationship: contributes_to_morphology_of UBERON:0000013 ! sympathetic nervous system +relationship: part_of UBERON:0000013 ! sympathetic nervous system + +[Term] +id: UBERON:0003966 +name: gonial bone +def: "investing bone that lies on the surface of the malleus." [MP:0008380] +subset: pheno_slim +synonym: "gonium" EXACT [MP:0008380] +xref: EMAPA:37874 {source="MA:th"} +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0003457 ! head bone +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: contributes_to_morphology_of UBERON:0001686 ! auditory ossicle bone +relationship: part_of UBERON:0001689 ! malleus bone + +[Term] +id: UBERON:0003967 +name: cutaneous elastic tissue +def: "The slender connective tissue fiber in the extracellular matrix of skin tissue that is composed of microfibrils and amorphous elastin and is characterized by great elasticity" [MP:0008418] +subset: pheno_slim +synonym: "cutaneous elastic fiber" NARROW [MP:0008418] +synonym: "dermal elastic fiber" NARROW [MP:0008418] +xref: EMAPA:37841 {source="MA:th"} +is_a: UBERON:0002521 ! elastic tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0002521 ! elastic tissue +intersection_of: part_of UBERON:0000014 ! zone of skin +relationship: contributes_to_morphology_of UBERON:0000014 ! zone of skin +relationship: part_of UBERON:0000014 ! zone of skin + +[Term] +id: UBERON:0003968 +name: peripheral lymph node +def: "The lymph nodes located outside the thoracic and abdominal cavities, such as the submandibular, prescapular, axillary, inguinal and popliteal lymph nodes" [https://github.com/obophenotype/uberon/issues/4, MP:0008463] +subset: pheno_slim +xref: EMAPA:37938 {source="MA:th"} +is_a: UBERON:0000029 ! lymph node +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan + +[Term] +id: UBERON:0003970 +name: placental labyrinth vasculature +def: "blood vessels of the layer of the placenta where embryonic and maternal blood vessels interdigitate" [MP:0008803] +subset: pheno_slim +synonym: "placental labyrinth vascular network" EXACT [] +synonym: "placental vasculature" RELATED [OBOL:automatic] +synonym: "vasculature of placenta labyrinth" EXACT [] +is_a: UBERON:0006876 ! vasculature of organ +intersection_of: UBERON:0002049 ! vasculature +intersection_of: part_of UBERON:0003946 ! placenta labyrinth +relationship: part_of UBERON:0003946 ! placenta labyrinth + +[Term] +id: UBERON:0003971 +name: interfrontal bone +def: "A bone between the frontal bones in the skull; an extra bony plate within the anterior fontanelle that is not usually present" [MP:0008818] +subset: pheno_slim +is_a: UBERON:0003462 ! facial bone + +[Term] +id: UBERON:0003972 +name: placenta junctional zone +def: "Fetally derived placental region that separates the maternal uterine tissue from the placenta labyrinth" [MP:0008957] +subset: pheno_slim +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0001987 ! placenta + +[Term] +id: UBERON:0003973 +name: nasal concha of ethmoid bone +def: "One of the conchae of the ethmoid bone, which occupy the caudal part of the nasal fossae and form the lateral and superior portions of the turbinate bones in mammals[MP]. The ethmoturbinals are associated with the cribiform plate. They are covered with olfactory epithelium. Primarily, they serve to increase the surface area over which olfactory receptor neurons can come in contact with respiratory air. These olfactory receptor nerves then synapse with the mitral cells of the olfactory lobes through the cribiform plate in the manner described above[Palaeos]" [http://palaeos.com/vertebrates/bones/braincase/ethmoid.html, MP:0008971] +subset: pheno_slim +synonym: "ethmo-turbinate" EXACT [] +synonym: "ethmoturbinal" EXACT [http://palaeos.com/vertebrates/bones/braincase/ethmoid.html] +synonym: "ethmoturbinate" EXACT [MP:0008971] +synonym: "nasal turbinate of ethmoid bone" EXACT [] +synonym: "turbinate of ethmoid bone" EXACT [] +xref: EMAPA:37914 {source="MA:th"} +xref: FMA:57456 +is_a: UBERON:0001762 ! turbinate bone +is_a: UBERON:0003462 ! facial bone +intersection_of: UBERON:0001762 ! turbinate bone +intersection_of: part_of UBERON:0001679 ! ethmoid bone +relationship: develops_from UBERON:0006332 {source="ISBN:0073040584"} ! nasal capsule +relationship: part_of UBERON:0001679 ! ethmoid bone + +[Term] +id: UBERON:0003974 +name: upper part of vagina +alt_id: UBERON:0015242 +def: "The upper third of the vagina." [MP:0009077] +subset: pheno_slim +synonym: "cranial vagina" EXACT [MP:0009077] +synonym: "pelvic part of vagina" EXACT [FMA:27974] +synonym: "upper third of vagina" RELATED [MP:0009077] +synonym: "upper vagina" RELATED [MP:0009077] +synonym: "vagina upper part" EXACT [MA:0003242] +xref: EMAPA:18987 +xref: FMA:27974 +xref: http://www.snomedbrowser.com/Codes/Details/362247003 +xref: MA:0003242 +is_a: UBERON:0003889 ! fallopian tube +relationship: contributes_to_morphology_of UBERON:0000996 ! vagina +relationship: part_of UBERON:0000996 {source="EMAPA"} ! vagina + +[Term] +id: UBERON:0003975 +name: internal female genitalia +def: "The internal feminine genital organs, including the ovaries, uterine tubes, uterus, uterine cervix, and vagina." [MP:0009209] +comment: TODO: Relabel. Make distinct organ class. See https://github.com/obophenotype/uberon/issues/547 +subset: organ_slim +subset: pheno_slim +synonym: "female internal genitalia" EXACT [FMA:45654] +synonym: "internal female genital organ" EXACT [BTO:0003099] +synonym: "internal genitalia of female reproductive system" EXACT [OBOL:automatic] +synonym: "organa genitalia feminina interna" RELATED [BTO:0003099] +xref: BTO:0003099 +xref: FMA:45654 +xref: http://www.snomedbrowser.com/Codes/Details/303518005 +is_a: UBERON:0003134 ! female reproductive organ +is_a: UBERON:0004175 ! internal genitalia +intersection_of: UBERON:0004175 ! internal genitalia +intersection_of: part_of UBERON:0000474 ! female reproductive system + +[Term] +id: UBERON:0003976 +name: saccule duct +def: "The saccular portion of the utriculosaccular duct that normally extends from the sacculus to the endolymphatic duct" [MP:0009259] +subset: pheno_slim +synonym: "saccular duct" EXACT [MP:0009259] +synonym: "saccular part of utriculosaccular duct" EXACT [] +xref: EMAPA:37982 {source="MA:th"} +xref: FMA:77825 +xref: http://www.snomedbrowser.com/Codes/Details/279829002 +is_a: UBERON:0000025 ! tube +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: connects UBERON:0001854 ! saccule of membranous labyrinth +relationship: connects UBERON:0001860 ! endolymphatic duct +relationship: part_of UBERON:0011774 ! utriculosaccular duct + +[Term] +id: UBERON:0003977 +name: utricle duct +def: "The utricular portion of the utriculosaccular duct that normally extends from the utriculus to the endolymphatic duct" [MP:0009260] +subset: pheno_slim +synonym: "utricular duct" EXACT [MP:0009260] +synonym: "utricular part of utriculosaccular duct" EXACT [] +xref: EMAPA:37981 {source="MA:th"} +xref: FMA:77824 +xref: http://www.snomedbrowser.com/Codes/Details/279819009 +is_a: UBERON:0000025 ! tube +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: connects UBERON:0001853 ! utricle of membranous labyrinth +relationship: connects UBERON:0001860 ! endolymphatic duct +relationship: part_of UBERON:0011774 ! utriculosaccular duct + +[Term] +id: UBERON:0003978 +name: valve +subset: grouping_class +synonym: "anatomical valve" EXACT [FMA:67611] +xref: EHDAA2:0004046 +xref: EHDAA:1892 +xref: EHDAA:4406 +xref: FMA:67611 +xref: galen:Valve +xref: OpenCyc:Mx4rvqiwE5wpEbGdrcN5Y29ycA +is_a: UBERON:0000064 ! organ part + +[Term] +id: UBERON:0003979 +name: utricle valve +def: "The utriculo-endolymphatic (UE) valve which is located in the antero-inferior wall of the utricle at the orifice of the utricular duct and serves to regulate endolymph volume in the endolymphatic sac, the utricle and the canals" [MP:0009261] +subset: pheno_slim +is_a: UBERON:0003978 ! valve +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0001853 ! utricle of membranous labyrinth +relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth + +[Term] +id: UBERON:0003980 +name: cerebellum fissure +def: "One of a set of deep furrows which divide the lobules of the cerebellum. Examples: postcentral, primary and secondary furrows" [MP:0009267] +subset: pheno_slim +synonym: "cerebellar fissure" EXACT [] +synonym: "cerebellar fissures" RELATED PLURAL [BAMS:CBf] +synonym: "cerebellar fissures set" RELATED PLURAL [FMA:77789] +synonym: "cerebellar sulci" RELATED PLURAL [HBA:9406] +synonym: "cerebellar sulcus" RELATED [] +synonym: "fissurae cerebelli" EXACT LATIN [FMA:77789, FMA:TA] +synonym: "set of cerebellar fissures" RELATED PLURAL [FMA:77789] +synonym: "sulcus of cerebellum" RELATED [] +xref: BAMS:CBf +xref: DHBA:12828 +xref: EMAPA:37818 {source="MA:th"} +xref: FMA:321547 +xref: HBA:9406 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1213 +xref: http://www.snomedbrowser.com/Codes/Details/314163001 +is_a: UBERON:0014466 ! subarachnoid fissure +intersection_of: UBERON:0014466 ! subarachnoid fissure +intersection_of: part_of UBERON:0002037 ! cerebellum +relationship: fma_set_term FMA:77789 +relationship: part_of UBERON:0002037 ! cerebellum + +[Term] +id: UBERON:0003981 +name: primordial ovarian follicle +def: "primordial follicles are indiscernible to the naked eye and develop to primary, secondary, and finally mature vesicular follicles" [MP:0009361] +subset: pheno_slim +synonym: "ovary primordial follicle" EXACT [MA:0001710] +synonym: "primordial follicle" EXACT [] +xref: EMAPA:30755 +xref: http://linkedlifedata.com/resource/umls/id/C1514441 +xref: MA:0001710 +xref: NCIT:C33400 +xref: UMLS:C1514441 {source="ncithesaurus:Primordial_Follicle"} +is_a: UBERON:0001305 ! ovarian follicle + +[Term] +id: UBERON:0003982 +name: mature ovarian follicle +def: "." [MP:0009364] +subset: efo_slim +subset: pheno_slim +subset: vertebrate_core +synonym: "antral follicle" RELATED [BTO:0000389] +synonym: "folliculi ovarici vesiculosi" RELATED [BTO:0000389] +synonym: "ovarian follicle stage IV" EXACT [ZFA:0001264] +synonym: "ovary mature follicle" EXACT [MA:0001709] +synonym: "preovulatory follicle" RELATED [BTO:0000389] +xref: BTO:0000389 +xref: EFO:0003653 +xref: EMAPA:30777 +xref: MA:0001709 +xref: TAO:0001264 +xref: ZFA:0001264 +is_a: UBERON:0001305 ! ovarian follicle +relationship: develops_from UBERON:0003981 ! primordial ovarian follicle + +[Term] +id: UBERON:0003983 +name: conus arteriosus +def: "A conical pouch formed from the upper and left angle of the right ventricle in the chordate heart, from which the pulmonary artery arises[WP]. the anteriosuperior, smooth-walled portion of the cavity of the right ventricle, beginning at the supraventricular crest and terminates in the pulmonary trunk[MP]." [http://en.wikipedia.org/wiki/Conus_arteriosus, MP:0009464] +xref: AAO:0010250 +xref: Conus:arteriosus +is_a: UBERON:0004151 ! cardiac chamber +relationship: part_of UBERON:0002080 ! heart right ventricle + +[Term] +id: UBERON:0003984 +name: uterine tube infundibulum +def: "The funnel-like expansion of the abdominal extremity of the uterine tube[MP]" [http://en.wikipedia.org/wiki/Infundibulum_of_uterine_tube, MP:0009466] +subset: pheno_slim +synonym: "infundibulum" BROAD INCONSISTENT [] +synonym: "infundibulum of fallopian tube" NARROW [FMA:18307] +synonym: "infundibulum of oviduct" EXACT [FMA:18307] +synonym: "infundibulum of uterine tube" EXACT [FMA:18307] +synonym: "infundibulum tubae uterinae" RELATED LATIN [http://en.wikipedia.org/wiki/Infundibulum_of_uterine_tube] +xref: EMAPA:29897 +xref: FMA:18307 +xref: http://en.wikipedia.org/wiki/Infundibulum_of_uterine_tube +xref: http://www.snomedbrowser.com/Codes/Details/362262001 +is_a: UBERON:0013515 {source="FMA"} ! subdivision of oviduct +relationship: present_in_taxon NCBITaxon:8782 + +[Term] +id: UBERON:0003985 +name: major sublingual duct +def: "The duct that drains the anterior portion of the sublingual gland and opens at the sublingual papilla" [MP:0009528] +subset: pheno_slim +synonym: "Bartholin's duct" RELATED INCONSISTENT [FMA:59986] +xref: BTO:0004558 +xref: EMAPA:37899 {source="MA:th"} +xref: FMA:59986 +xref: http://en.wikipedia.org/wiki/Major_sublingual_duct +xref: http://www.snomedbrowser.com/Codes/Details/25237008 +is_a: UBERON:0001838 ! sublingual duct +disjoint_from: UBERON:0010150 ! duct of major vestibular gland + +[Term] +id: UBERON:0003986 +name: minor sublingual duct +def: "Any of the 8-20 small ducts that open into the mouth on the surface of the sublingual fold" [MP:0009529] +subset: pheno_slim +synonym: "duct of Rivinus" EXACT [http://en.wikipedia.org/wiki/Sublingual_duct] +xref: EMAPA:37909 {source="MA:th"} +xref: FMA:59987 +is_a: UBERON:0001838 ! sublingual duct +relationship: fma_set_term FMA:71643 + +[Term] +id: UBERON:0003987 +name: Hassall's corpuscle +def: "The small spherical bodies of epithelial cells found in the medulla of the thymus, that are arranged in a concentric pattern around clusters of degenerating lymphocytes, eosinophils and macrophages" [MP:0009539] +subset: pheno_slim +synonym: "capsule of Hassal's corpuscle" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "thymic corpuscle" EXACT [] +xref: EMAPA:35395 +xref: Hassall's:corpuscles +xref: http://linkedlifedata.com/resource/umls/id/C0229950 +xref: http://www.snomedbrowser.com/Codes/Details/34223001 +xref: MA:0000772 +xref: NCIT:C13170 +xref: UMLS:C0229950 {source="ncithesaurus:Hassall_s_Corpuscle"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0034922 ! cell cluster +relationship: contributes_to_morphology_of UBERON:0002124 ! medulla of thymus +relationship: contributes_to_morphology_of UBERON:0003846 ! thymus epithelium +relationship: part_of UBERON:0002124 ! medulla of thymus +relationship: part_of UBERON:0003846 ! thymus epithelium + +[Term] +id: UBERON:0003988 +name: thymus corticomedullary boundary +def: "The dense region demarcating the thymus medulla from the surrounding cortex that is characterized by numerous blood vessels (predominantly arterioles) with some perivascular connective tissue, mature and immature T lymphocytes, dendritic cells, variable numbers of perivascular B-lymphocytes and plasma cells; site of entry of bone marrow stem cells and exit of mature, functional T cells" [MP:0009543] +subset: pheno_slim +synonym: "thymic cortico-medullary boundary" EXACT [MP:0009543] +synonym: "thymic corticomedullary boundary" EXACT [MP:0009543] +synonym: "thymic corticomedullary junction" EXACT [MP:0009543] +synonym: "thymic corticomedullary zone" EXACT [MP:0009543] +synonym: "thymus CMZ" EXACT [MP:0009543] +synonym: "thymus cortico-medullary boundary" EXACT [MP:0009543] +synonym: "thymus corticomedullary junction" EXACT [MP:0009543] +synonym: "thymus corticomedullary zone" EXACT [MP:0009543] +xref: EMAPA:37974 {source="MA:th"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0007651 ! anatomical junction +relationship: contributes_to_morphology_of UBERON:0002125 ! thymus lobule +relationship: has_part UBERON:0001980 ! arteriole +relationship: part_of UBERON:0002125 ! thymus lobule + +[Term] +id: UBERON:0003989 +name: medulla oblongata anterior median fissure +def: "The longitudinal groove in the midline of the anterior aspect of the medulla oblongata" [MP:0009680] +subset: pheno_slim +synonym: "anterior median fissure" EXACT [FMA:83734] +synonym: "anterior median fissure of medulla" EXACT [FMA:83734] +synonym: "anterior median fissure of medulla oblongata" EXACT [FMA:83734] +synonym: "fissura mediana anterior medullae oblongatae" EXACT LATIN [FMA:83734, FMA:TA] +synonym: "ventral median fissure of medulla" EXACT [FMA:83734] +synonym: "ventral median sulcus" EXACT [FMA:83734] +xref: BAMS:amf +xref: FMA:83734 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=700 +xref: http://en.wikipedia.org/wiki/Anterior_median_fissure_of_the_medulla_oblongata +xref: http://www.snomedbrowser.com/Codes/Details/279288001 +is_a: UBERON:0013118 ! sulcus of brain +relationship: part_of UBERON:0001896 ! medulla oblongata + +[Term] +id: UBERON:0003990 +name: spinal cord motor column +def: "The subclasses of motor neurons which are organized into longitudinally oriented columns that occupy distinct and, in some cases, discontinuous domains along the rostrocaudal axis of the spinal cord; motor neurons within a single column send their axons to a common peripheral target" [MP:0009685] +subset: pheno_slim +is_a: UBERON:0016550 ! spinal cord column +relationship: contributes_to_morphology_of UBERON:0002240 ! spinal cord + +[Term] +id: UBERON:0003991 +name: fourth ventricle median aperture +def: "The large midline opening of the posterior inferior part of the roof of the fourth ventricle that connects the fourth ventricle to the posterior cerebromedullary cistern and the spinal cord" [http://en.wikipedia.org/wiki/Median_aperture, MP:0009802] +subset: pheno_slim +synonym: "apertura mediana" EXACT LATIN [FMA:75015, FMA:TA] +synonym: "apertura mediana ventriculi quarti" RELATED LATIN [http://en.wikipedia.org/wiki/Median_aperture] +synonym: "arachnoid forament" RELATED [MA:0002947] +synonym: "foramen of Magendie" EXACT [FMA:75015] +synonym: "foramen of Majendie" EXACT [FMA:75015] +synonym: "fourth ventricle median aperture" EXACT [MA:0002947] +synonym: "median aperture" BROAD [MP:0009802] +synonym: "median aperture of fourth ventricle" EXACT [FMA:75015] +xref: BAMS:MA4V +xref: BAMS:MAP +xref: FMA:75015 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=641 +xref: http://linkedlifedata.com/resource/umls/id/C0152288 +xref: http://www.snomedbrowser.com/Codes/Details/279449001 +xref: MA:0002947 +xref: Median:aperture +xref: NCIT:C32626 +xref: UMLS:C0152288 {source="ncithesaurus:Foramen_of_Magendie"} +is_a: UBERON:0004668 ! fourth ventricle aperture +relationship: contributes_to_morphology_of UBERON:0002422 ! fourth ventricle + +[Term] +id: UBERON:0003992 +name: fourth ventricle lateral aperture +def: "One of the two lateral openings of the fourth ventricle into the subarachnoid space at the cerebellopontine angle[MP]." [http://en.wikipedia.org/wiki/Lateral_aperture, MP:0009803] +subset: pheno_slim +synonym: "apertura lateralis" EXACT LATIN [FMA:78473, FMA:TA] +synonym: "apertura lateralis ventriculi quarti" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_aperture] +synonym: "foramen of key and retzius" EXACT [FMA:78473] +synonym: "foramen of Key-Retzius" EXACT [FMA:78473] +synonym: "foramen of Luschka" EXACT [FMA:78473] +synonym: "foramen of Retzius" EXACT [FMA:78473] +synonym: "forament of Luschka" RELATED [MA:0002946] +synonym: "lateral aperture" BROAD [MP:0009803] +synonym: "lateral aperture of fourth ventricle" EXACT [FMA:78473] +xref: BAMS:LA4V +xref: BAMS:LAP +xref: FMA:78473 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=640 +xref: http://linkedlifedata.com/resource/umls/id/C0152287 +xref: http://www.snomedbrowser.com/Codes/Details/63426007 +xref: Lateral:aperture +xref: MA:0002946 +xref: NCIT:C32625 +xref: UMLS:C0152287 {source="ncithesaurus:Foramen_of_Luschka"} +is_a: UBERON:0004668 ! fourth ventricle aperture +relationship: contributes_to_morphology_of UBERON:0002422 ! fourth ventricle + +[Term] +id: UBERON:0003993 +name: interventricular foramen of CNS +def: "The paired channels that connect the lateral and third ventricles and allows cerebrospinal fluid produced in the lateral ventricles to flow into the third ventricles" [http://en.wikipedia.org/wiki/Interventricular_foramina_(neural_anatomy), MP:0009804] +subset: pheno_slim +synonym: "foramen interventriculare" EXACT LATIN [http://en.wikipedia.org/wiki/Interventricular_foramina_(neural_anatomy)] +synonym: "foramen Monroi" EXACT [http://en.wikipedia.org/wiki/Interventricular_foramina_(neural_anatomy)] +synonym: "interventricular foramen" EXACT [FMA:75351] +synonym: "interventricular foramina" EXACT [http://en.wikipedia.org/wiki/Interventricular_foramina_(neural_anatomy)] +xref: BAMS:IVF +xref: BAMS:ivf +xref: DHBA:10608 +xref: EMAPA:36067 +xref: FMA:75351 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=447 +xref: http://en.wikipedia.org/wiki/Interventricular_foramina_(neural_anatomy) +xref: http://linkedlifedata.com/resource/umls/id/C0016520 +xref: http://www.snomedbrowser.com/Codes/Details/279248006 +xref: MBA:124 +xref: NCIT:C32627 +xref: UMLS:C0016520 {source="ncithesaurus:Foramen_of_Monroe"} +is_a: UBERON:0004111 {source="EHDAA2"} ! anatomical conduit +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +disjoint_from: UBERON:0013152 ! interventricular foramen of heart +relationship: channel_for UBERON:0001359 ! cerebrospinal fluid +relationship: part_of UBERON:0005281 ! ventricular system of central nervous system + +[Term] +id: UBERON:0003994 +name: pelvic ligament +def: "The dorsal sacroiliac, the sacrotuberal and/or the iliolumbar ligaments associated with the bony ring formed by the pair of hip bones fused at the symphysis and their firm articulation with the sacrum" [MP:0009807] +subset: pheno_slim +synonym: "pelvis ligament" EXACT [MA:0002948] +xref: MA:0002948 +is_a: UBERON:0000211 ! ligament +is_a: UBERON:0005179 ! pelvic region element + +[Term] +id: UBERON:0003995 +name: subarcuate fossa +def: "The irregular depression found on the posterior inner surface of the petrous portion of the temporal bone just below its crest and above and lateral to the internal acoustic meatus[MP]." [MP:0009822] +comment: In the temporal bone, above and between the aquæductus vestibuli is an irregular depression which lodges a process of the dura mater and transmits a small vein and the subarcuate artery[1] a branch of the internal auditory artery, which is an end artery that supplies blood to the inner ear ; in the infant this depression is represented by a large fossa, the subarcuate fossa, which extends backward as a blind tunnel under the superior semicircular canal. It is extensive in most primates (except for great apes) and nearly all mammals. In these animals, the subarcuate fossa houses a part of the cerebellum, the petrosal lobe[WP] +subset: pheno_slim +synonym: "fossa subarcuata" EXACT LATIN [FMA:56418, FMA:TA] +xref: EMAPA:37967 {source="MA:th"} +xref: FMA:56418 +xref: Subarcuate:fossa +is_a: UBERON:0008789 ! cranial fossa +relationship: contributes_to_morphology_of UBERON:0001678 ! temporal bone +relationship: part_of UBERON:0001694 ! petrous part of temporal bone + +[Term] +id: UBERON:0003996 +name: cervical vertebra 1 arcus anterior +alt_id: UBERON:0005209 +def: "The arch that connects the lateral masses of the atlas anteriorly and articulates with the anterior articular facet of the dens of the axis[MP]." [MP:0009879] +subset: pheno_slim +synonym: "anterior arch of atlas" EXACT [MA:0002954] +synonym: "arcus anterior" EXACT [MP:0009879] +synonym: "arcus anterior atlantis" EXACT [MA:0002954] +synonym: "arcus anterior atlantis" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_arch_of_atlas] +synonym: "cervical vertebra 1 arcus anterior" EXACT [MA:0002954] +xref: FMA:23976 +xref: http://en.wikipedia.org/wiki/Anterior_arch_of_atlas +xref: http://www.snomedbrowser.com/Codes/Details/181891000 +xref: MA:0002954 +is_a: UBERON:0004530 ! bony projection +disjoint_from: UBERON:0008437 {source="lexical"} ! posterior arch of atlas +relationship: contributes_to_morphology_of UBERON:0001092 ! vertebral bone 1 +relationship: part_of UBERON:0001092 ! vertebral bone 1 + +[Term] +id: UBERON:0003997 +name: hyoid bone greater horn +def: "The larger and more lateral of the paired processes on either side of the hyoid bone[MP]" [http://en.wikipedia.org/wiki/Greater_cornu, MP:0009913] +subset: pheno_slim +synonym: "cornu majus" EXACT [FMA:59496] +synonym: "cornu majus ossis hyoidei" EXACT LATIN [FMA:59496, FMA:TA] +synonym: "cornua majora" EXACT [http://www.biology-online.org/dictionary/Greater_cornua] +synonym: "epibranchial" RELATED [CHECKME:CHECKME] +synonym: "epibranchial of gill arch I" RELATED [CHECKME:CHECKME] +synonym: "epibranchial of pharyngeal arch III" RELATED [CHECKME:CHECKME] +synonym: "greater cornu" EXACT [FMA:59496] +synonym: "greater cornua" EXACT [http://www.biology-online.org/dictionary/Greater_cornua] +synonym: "greater cornua" RELATED [http://en.wikipedia.org/wiki/Hyoid_bone] +synonym: "greater horn" EXACT [FMA:59496] +synonym: "greater horn of hyoid" EXACT [FMA:59496] +synonym: "greater horn of hyoid bone" EXACT [FMA:59496] +synonym: "greater horn of the hyoid" RELATED [http://en.wikipedia.org/wiki/Hyoid_bone] +synonym: "hyoid bone greater cornu" RELATED [MA:0002959] +synonym: "hyoid bone long horn" RELATED [] +synonym: "hyoid bone superior horn" RELATED [MA:0002959] +synonym: "hyoid bone upper horn" RELATED [MA:0002959] +synonym: "posterior horn of hyoid" RELATED [] +synonym: "second horn of hyoid" RELATED [ISBN:0073040584] +synonym: "tyrohal" EXACT [http://www.biology-online.org/dictionary/Greater_cornua] +synonym: "tyrohals" EXACT [http://www.biology-online.org/dictionary/Greater_cornua] +xref: EMAPA:18651 +xref: FMA:59496 +xref: Greater:cornu +xref: http://www.snomedbrowser.com/Codes/Details/369008008 +xref: MA:0002959 +is_a: UBERON:0010273 {source="FMA"} ! zone of hyoid bone +is_a: UBERON:0015212 ! lateral structure +relationship: contributes_to_morphology_of UBERON:0001685 ! hyoid bone +relationship: develops_from UBERON:0003114 {source="Wikipedia"} ! pharyngeal arch 3 +relationship: in_lateral_side_of UBERON:0001685 {source="FMA-abduced-lr"} ! hyoid bone + +[Term] +id: UBERON:0003998 +name: hyoid bone lesser horn +def: "shorter and more medial of the paired processes on either side of the hyoid bone[MP]" [http://en.wikipedia.org/wiki/Lesser_cornu, MP:0009914] +subset: pheno_slim +synonym: "anterior horn of hyoid" RELATED [ISBN:0073040584] +synonym: "ceratohyal" RELATED SENSU [ISBN:0073040584] +synonym: "cornu minus" EXACT [FMA:59499] +synonym: "cornu minus ossis hyoidei" EXACT LATIN [FMA:59499, FMA:TA] +synonym: "hyoid bone lesser cornu" RELATED [MA:0002960] +synonym: "hyoid bone lower horn" RELATED [MA:0002960] +synonym: "lesser cornu" EXACT [FMA:59499] +synonym: "lesser cornu of hyoid" EXACT [] +synonym: "lesser cornua" EXACT [http://www.biology-online.org/dictionary/Lesser_cornua] +synonym: "lesser horn" EXACT [FMA:59499] +synonym: "lesser horn of hyoid" EXACT [FMA:59499] +synonym: "lesser horn of hyoid bone" EXACT [FMA:59499] +synonym: "lesser horn of the hyoid" EXACT [] +xref: EMAPA:18652 +xref: FMA:59499 +xref: http://www.snomedbrowser.com/Codes/Details/369007003 +xref: Lesser:cornu +xref: MA:0002960 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010273 {source="FMA"} ! zone of hyoid bone +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0015212 ! lateral structure +relationship: contributes_to_morphology_of UBERON:0001685 ! hyoid bone +relationship: develops_from UBERON:0004368 {source="MP-implied-by-def"} ! Reichert's cartilage +relationship: in_lateral_side_of UBERON:0001685 {source="FMA-abduced-lr"} ! hyoid bone + +[Term] +id: UBERON:0003999 +name: hyoid bone body +def: "The main curve of the hyoid bone, from which the horns extend" [http://en.wikipedia.org/wiki/Body_of_hyoid_bone, MP:0009917] +subset: pheno_slim +synonym: "base of hyoid bone" RELATED [MA:0002958] +synonym: "basihyal bone" RELATED [MA:0002958] +synonym: "basihyoid bone" RELATED [MA:0002958] +synonym: "body of hyoid" RELATED [ISBN:0073040584] +synonym: "body of hyoid bone" RELATED [MA:0002958] +synonym: "corpus ossis hyoidei" RELATED LATIN [http://en.wikipedia.org/wiki/Body_of_hyoid_bone] +synonym: "hyoid bone base" RELATED [MA:0002958] +xref: EMAPA:18653 +xref: FMA:59495 +xref: http://en.wikipedia.org/wiki/Body_of_hyoid_bone +xref: http://www.snomedbrowser.com/Codes/Details/369006007 +xref: MA:0002958 +is_a: UBERON:0010273 {source="cjm"} ! zone of hyoid bone +relationship: contributes_to_morphology_of UBERON:0001685 ! hyoid bone + +[Term] +id: UBERON:0004000 +name: tarsal gland acinus +def: "A sac-like structure comprising a sebaceous gland." [MP:0009935] +subset: pheno_slim +synonym: "acinus of tarsal gland" EXACT [] +synonym: "Meibomian gland acinus" EXACT [] +synonym: "palpebral gland acinus" RELATED [] +xref: EMAPA:37972 {source="MA:th"} +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0011846 ! acinus of sebaceous gland +intersection_of: UBERON:0009842 ! glandular acinus +intersection_of: part_of UBERON:0001818 ! tarsal gland +relationship: contributes_to_morphology_of UBERON:0001818 ! tarsal gland +relationship: part_of UBERON:0001818 ! tarsal gland + +[Term] +id: UBERON:0004001 +name: olfactory bulb layer +def: "." [MP:0009946] +subset: pheno_slim +synonym: "cytoarchitectural part of olfactory bulb" EXACT [NLXANAT:20090402] +xref: EMAPA:37917 {source="MA:th"} +xref: NLXANAT:20090402 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +intersection_of: UBERON:0022303 ! nervous system cell part layer +intersection_of: part_of UBERON:0002264 ! olfactory bulb +relationship: contributes_to_morphology_of UBERON:0002264 ! olfactory bulb +relationship: part_of UBERON:0002264 ! olfactory bulb + +[Term] +id: UBERON:0004002 +name: posterior lobe of cerebellum +def: "The region of the cerebellum that is posterior to the primary fissure and anterior to the posteriolateral fissure" [MP:0009962] +subset: pheno_slim +synonym: "cerebellar posterior lobe" EXACT [] +synonym: "cerebellum posterior lobe" EXACT [] +synonym: "cerebrocerebellum" RELATED [FMA:72252] +synonym: "middle lobe-1 of cerebellum" EXACT [FMA:72252] +synonym: "posterior cerebellar lobe" EXACT [FMA:72252] +synonym: "posterior lobe of cerebellum" EXACT [] +synonym: "posterior lobe of the cerebellum" EXACT [BIRNLEX:911] +synonym: "posterior lobe-1 of cerebellum" EXACT [FMA:72252] +xref: BAMS:PLCb +xref: BIRNLEX:911 +xref: DHBA:12844 +xref: EMAPA:35222 +xref: FMA:72252 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=660 +xref: http://en.wikipedia.org/wiki/Posterior_lobe_of_cerebellum +xref: http://www.snomedbrowser.com/Codes/Details/279360009 +xref: MA:0002964 +is_a: UBERON:0005293 ! cerebellum lobe +relationship: contributes_to_morphology_of UBERON:0002129 ! cerebellar cortex + +[Term] +id: UBERON:0004003 +name: cerebellum hemisphere lobule +def: "The region of a cerebellar lobule that resides in either of the lateral sections of the cerebellum outside the vermis; in mammals, the vermis portion of the cerebellum has a foliation pattern along the AP axis that is distinct from the lateral cerebellar hemispheres" [MP:0009963] +subset: pheno_slim +synonym: "cerebellar hemisphere lobule" EXACT [] +synonym: "lobule of cerebellar hemisphere" EXACT [FMA:83880] +synonym: "lobule of hemisphere of cerebellum" EXACT [FMA:83880] +xref: FMA:83880 +xref: MA:0002967 +xref: NLXANAT:20081201 +is_a: UBERON:0004004 ! cerebellum lobule +intersection_of: UBERON:0004004 ! cerebellum lobule +intersection_of: part_of UBERON:0002245 ! cerebellar hemisphere +relationship: contributes_to_morphology_of UBERON:0002245 ! cerebellar hemisphere +relationship: part_of UBERON:0002245 ! cerebellar hemisphere + +[Term] +id: UBERON:0004004 +name: cerebellum lobule +def: "one of the the ten gyri of the cerebellar cortex" [MP:0009964] +subset: pheno_slim +synonym: "lobular parts of the cerebellar cortex" EXACT [BIRNLEX:1084] +xref: BIRNLEX:1084 +xref: MA:0002966 +is_a: UBERON:0002749 ! regional part of cerebellar cortex +relationship: contributes_to_morphology_of UBERON:0002129 ! cerebellar cortex + +[Term] +id: UBERON:0004006 +name: cerebellum intermediate zone +alt_id: UBERON:0014342 +def: "The paired regions of the cerebellar hemisphere that lie adjacent to the vermis and are between the vermis and lateral regions of the hemispheres; it receives input from the corticopontocerebellar fibers that originate from the motor cortex, and also receives sensory feedback from the muscles; these signals are integrated by this region, to coordinate muscle activity with motor inputs" [MP:0009966] +subset: pheno_slim +synonym: "cerebellar paravermis" EXACT [MP:0009966] +synonym: "cerebellar paravermis" EXACT [NLXANAT:20081236] +synonym: "cerebellum intermediate hemisphere" EXACT [MP:0009966] +synonym: "intermediate part of spinocerebellum" EXACT [MP:0009966] +synonym: "intermediate zone" EXACT [NLXANAT:20081236] +synonym: "paleocerebellum" RELATED [http://en.wikipedia.org/wiki/Anatomy_of_the_cerebellum] +synonym: "paravermal zone of the cerebellum" RELATED [NeuroNames:2129] +synonym: "paravermis" EXACT [MP:0009966] +synonym: "spinocerebellum" RELATED [http://en.wikipedia.org/wiki/Cerebellar_hemisphere] +xref: EMAPA:37822 {source="MA:th"} +xref: HBA:9611 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2066 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2129 +xref: NLXANAT:20081236 +xref: PBA:294021942 +is_a: UBERON:0002749 ! regional part of cerebellar cortex +relationship: adjacent_to UBERON:0004720 ! cerebellar vermis +relationship: contributes_to_morphology_of UBERON:0002245 ! cerebellar hemisphere +relationship: part_of UBERON:0002245 ! cerebellar hemisphere +relationship: part_of UBERON:0014643 ! spinocerebellum + +[Term] +id: UBERON:0004008 +name: cerebellar plate +def: "The embryonic pseudostratified epithelium of the fourth cerebellar ventricle that eventually forms the vermis and ventral neuroepithelium" [MP:0000856] +subset: pheno_slim +synonym: "cerebellum plate" EXACT [] +synonym: "cerebellum roof plate" RELATED [EHDAA2:0004401] +xref: DHBA:12698 +xref: EHDAA2:0004401 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1373 +is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010371 ! ecto-epithelium +relationship: develops_from UBERON:0005568 {source="EHDAA2"} ! rhombomere 1 roof plate +relationship: part_of UBERON:0002037 {source="EHDAA2"} ! cerebellum + +[Term] +id: UBERON:0004009 +name: cerebellum posterior vermis +def: "The posterior portion of the narrow middle zone between the two hemispheres of the cerebellum that is located posterior to the primary fissure" [MP:0000869] +subset: pheno_slim +synonym: "posterior cerebellum vermis" EXACT [] +synonym: "posterior lobe vermis" RELATED [FMA:72259] +synonym: "vermis lobus posterior" EXACT LATIN [FMA:72259, FMA:TA] +synonym: "vermis of posterior lobe" EXACT [FMA:72259] +synonym: "vermis of posterior lobe of cerebellum" EXACT [] +synonym: "vermis of the posterior lobe of the cerebellum" EXACT [NLXANAT:20081240] +xref: BAMS:VPLb +xref: FMA:72259 +xref: HBA:4704 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=673 +xref: MA:0002970 +xref: NLXANAT:20081240 +is_a: UBERON:0004720 ! cerebellar vermis +intersection_of: UBERON:0004720 ! cerebellar vermis +intersection_of: part_of UBERON:0004002 ! posterior lobe of cerebellum +relationship: contributes_to_morphology_of UBERON:0004002 ! posterior lobe of cerebellum +relationship: part_of UBERON:0004002 ! posterior lobe of cerebellum + +[Term] +id: UBERON:0004010 +name: primary muscle spindle +def: "The sensory organ in muscle; involved in the stretch reflex and sensitive to stretch velocity" [MP:0000991] +subset: pheno_slim +is_a: UBERON:0003718 ! muscle spindle + +[Term] +id: UBERON:0004011 +name: secondary muscle spindle +def: "The sensory organ in muscle; involved in the stretch reflex and not sensitive to stretch velocity" [MP:0000994] +subset: pheno_slim +is_a: UBERON:0003718 ! muscle spindle + +[Term] +id: UBERON:0004012 +name: golgi tendon organ +def: "The sensory organ in muscle that is involved in regulating muscle tension" [MP:0000999] +subset: pheno_slim +synonym: "neurotendinous ending" EXACT [FMA:83608] +synonym: "neurotendinous organ of golgi" EXACT [FMA:83608] +xref: EMAPA:37873 {source="MA:th"} +xref: FMA:83608 +xref: http://en.wikipedia.org/wiki/Golgi_tendon_organ +xref: http://linkedlifedata.com/resource/umls/id/C0027929 +xref: NCIT:C13826 +xref: UMLS:C0027929 {source="ncithesaurus:Golgi_Tendon_Organ"} +is_a: UBERON:0000020 ! sense organ +relationship: part_of UBERON:0001630 ! muscle organ + +[Term] +id: UBERON:0004013 +name: egg cylinder +def: "The transient cup-like structure of the epiblast that consists of a single layer of embryonic cells" [MP:0003085] +subset: pheno_slim +xref: EMAPA:36119 +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0002532 ! epiblast (generic) + +[Term] +id: UBERON:0004014 +name: labium minora +def: "One of the folds of skin which form the inner lips on both sides of the vaginal opening" [MP:0003520] +subset: pheno_slim +synonym: "labia minorum" EXACT [] +synonym: "labium minora" EXACT [] +synonym: "labium minorum" EXACT [MA:0002845] +synonym: "labium minus" EXACT [FMA:20374] +synonym: "labium minus pudendi" RELATED LATIN [http://en.wikipedia.org/wiki/Labia_minora] +xref: FMA:20374 +xref: galen:LabiaMinora +xref: http://linkedlifedata.com/resource/umls/id/C0227766 +xref: http://www.snomedbrowser.com/Codes/Details/362240001 +xref: Labia:minora +xref: MA:0002845 +xref: NCIT:C12307 +xref: UMLS:C0227766 {source="ncithesaurus:Labium_Minus"} +is_a: UBERON:0004084 ! genital labium +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: develops_from UBERON:0004876 {source="Wikipedia"} ! urogenital fold + +[Term] +id: UBERON:0004015 +name: embryonic-extraembryonic boundary +def: "The connection between the embryo proper and extraembryonic tissues" [MP:0003890] +subset: pheno_slim +is_a: UBERON:0000015 ! non-material anatomical boundary +intersection_of: UBERON:0000015 ! non-material anatomical boundary +intersection_of: adjacent_to UBERON:0000478 ! extraembryonic structure +intersection_of: adjacent_to UBERON:0002050 ! embryonic structure +relationship: adjacent_to UBERON:0000478 ! extraembryonic structure +relationship: adjacent_to UBERON:0002050 ! embryonic structure + +[Term] +id: UBERON:0004016 +name: dermatome +def: "A transitional population of migrating mesenchymal cells that derive from somites and that will become dermal cells." [AEO:0001017, AEO:JB] +subset: pheno_slim +synonym: "cutis plate" EXACT [http://en.wikipedia.org/wiki/Cutis_plate] +synonym: "dermatomal mesenchyme" EXACT [http://en.wikipedia.org/wiki/Cutis_plate] +synonym: "epimere mesoderm" RELATED [] +synonym: "mesenchyma dermatomiale" RELATED LATIN [http://en.wikipedia.org/wiki/Dermatomal_mesenchyme] +xref: AAO:0011028 +xref: AEO:0001017 +xref: Dermatome:(embryology) +xref: EHDAA2_RETIRED:0003428 +xref: EHDAA:1719 +xref: EHDAA:1725 +xref: EHDAA:1731 +xref: EHDAA:1737 +xref: EMAPA:32838 +xref: FMA:295656 +xref: http://linkedlifedata.com/resource/umls/id/C0180383 +xref: NCIT:C61572 +xref: UMLS:C0180383 {source="ncithesaurus:Dermatome"} +xref: XAO:0000220 +is_a: UBERON:0017650 {source="AEO"} ! developing mesenchymal structure +disjoint_from: UBERON:0007121 ! skin nerve field +relationship: develops_from UBERON:0004290 {source="EHDAA2-abduced"} ! dermomyotome + +[Term] +id: UBERON:0004017 +name: periocular mesenchyme +def: "The mesenchymal cells that give rise to the corneal endothelium, corneal stroma, sclera, iris stroma, ciliary muscle, ciliary stroma, and trabecular meshwork of the eye[MP]." [http://www.ncbi.nlm.nih.gov/pubmed/3709965, MP:0004054] +subset: pheno_slim +synonym: "periocular mesenchyme" RELATED [XAO:0004089] +xref: XAO:0004089 +xref: ZFA:0005572 +is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: has_developmental_contribution_from UBERON:0003849 {evidence="PMID:3709965"} ! mesencephalic neural crest +relationship: part_of UBERON:0010312 ! immature eye + +[Term] +id: UBERON:0004019 +name: baroreceptor +def: "The sensory nerve endings in the wall of the atria of the heart, vena cava, aortic arch and carotid sinus that are sensitive to changes in blood pressure" [MP:0004118] +comment: WP classifies as mechanoreceptor +subset: pheno_slim +synonym: "baroceptor" RELATED [http://en.wikipedia.org/wiki/Baroreceptor] +synonym: "pressoreceptor" RELATED [http://en.wikipedia.org/wiki/Baroreceptor] +synonym: "stretch receptor" RELATED [] +synonym: "vascular stretch receptor" RELATED [MESH:A08.800.050.800.900.700] +xref: EMAPA:36597 +xref: FMA:85601 +xref: http://en.wikipedia.org/wiki/Baroreceptor +xref: MA:0003009 +xref: MESH:D011311 +is_a: UBERON:0018389 {source="FMA"} ! interoceptor +relationship: located_in UBERON:0001981 ! blood vessel +relationship: part_of UBERON:0007798 ! vascular system + +[Term] +id: UBERON:0004020 +name: obsolete embryonic cilium +def: "OBSOLETE: the earliest cilia of the mouse embryo found on the cells of the embryonic node" [MP:0004131] +comment: Made obsolete as cell components are out of scope +is_obsolete: true + +[Term] +id: UBERON:0004021 +name: spongiotrophoblast layer +def: "The structure of the outer structural layer of the rodent placenta[MP]." [http://www.ncbi.nlm.nih.gov/pubmed/19829370, MP:0004255] +subset: pheno_slim +synonym: "spongiotrophoblast" BROAD [] +synonym: "spongiotrophoblast layer of placenta" EXACT [] +xref: BTO:0005402 +xref: EMAPA:31876 +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0005292 ! extraembryonic tissue +relationship: develops_from UBERON:0004364 {source="http://www.ncbi.nlm.nih.gov/pubmed/19829370"} ! ectoplacental cone +relationship: part_of UBERON:0001987 ! placenta + +[Term] +id: UBERON:0004022 +name: germinal neuroepithelium +def: "The single layer of epithelial cells that lines the early neural tube and develops into the nervous system and into the neural crest cells" [http://www.ncbi.nlm.nih.gov/books/NBK10047, MP:0004261] +subset: pheno_slim +synonym: "germinal neuroepithelial layer" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "germinal neuroepithelium" EXACT [NCBIBook:NBK10047] +synonym: "original neural tube" EXACT [NCBIBook:NBK10047] +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium +is_a: UBERON:0034706 {source="NCBIBook:NBK10047"} ! proliferating neuroepithelium +disjoint_from: UBERON:0006934 ! sensory epithelium +relationship: adjacent_to UBERON:0003842 ! neural tube lumen +relationship: bounding_layer_of UBERON:0001049 ! neural tube +relationship: part_of UBERON:0001049 ! neural tube + +[Term] +id: UBERON:0004023 +name: ganglionic eminence +def: "The transient proliferative population of neurons that expands exponentially during late prenatal development; it is a continuous germinal zone distinct from the ventricular zone that surrounds the brain ventricles[MP]." [MP:0004274] +subset: pheno_slim +synonym: "embryonic GE" BROAD ABBREVIATION [] +synonym: "embryonic subventricular zone" EXACT [MP:0004274] +synonym: "embryonic SVZ" BROAD ABBREVIATION [] +synonym: "embryonic/fetal subventricular zone" EXACT [] +synonym: "fetal subventricular zone" EXACT [] +synonym: "GE" BROAD ABBREVIATION [] +synonym: "subependymal layer" EXACT [MP:0004274] +synonym: "subventricular zone" BROAD [DHBA:SZ] +synonym: "SVZ" BROAD ABBREVIATION [MP:0004274] +xref: DHBA:10549 +xref: EMAPA:32665 +xref: Ganglionic:eminence +xref: PBA:128012818 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0001016 ! nervous system + +[Term] +id: UBERON:0004024 +name: medial ganglionic eminence +def: "A distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the neocortex; however, hippocampal neurons, thalamus, septum and olfactory bulb neurons are also partly derived from the MGE." [MP:0004276] +subset: pheno_slim +synonym: "MGE" BROAD ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23375746] +xref: DHBA:10550 +xref: EMAPA:37471 {source="MA:th"} +xref: PBA:128012834 +is_a: UBERON:0002050 ! embryonic structure +disjoint_from: UBERON:0004025 {source="lexical"} ! lateral ganglionic eminence +relationship: contributes_to_morphology_of UBERON:0004023 ! ganglionic eminence +relationship: part_of UBERON:0004023 ! ganglionic eminence + +[Term] +id: UBERON:0004025 +name: lateral ganglionic eminence +def: "A distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the striatum; however, neocortex, thalamus, septum and olfactory bulb neurons are also partly derived from the LGE" [MP:0004277] +subset: pheno_slim +synonym: "LGE" BROAD ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23375746] +xref: DHBA:10551 +xref: EMAPA:37470 {source="MA:th"} +xref: PBA:128012822 +is_a: UBERON:0002050 ! embryonic structure +relationship: contributes_to_morphology_of UBERON:0004023 ! ganglionic eminence +relationship: part_of UBERON:0004023 ! ganglionic eminence + +[Term] +id: UBERON:0004026 +name: caudal ganglionic eminence +def: "The caudally located, distinct elevation of a transient proliferating cell mass of the fetal subventricular zone, located adjacent to the lateral ventricle" [MP:0004278] +subset: efo_slim +subset: pheno_slim +synonym: "CGE" BROAD [] +xref: DHBA:10552 +xref: EFO:0001911 +xref: EMAPA:37469 {source="MA:th"} +xref: PBA:128012846 +is_a: UBERON:0002050 ! embryonic structure +relationship: contributes_to_morphology_of UBERON:0004023 ! ganglionic eminence +relationship: part_of UBERON:0004023 ! ganglionic eminence + +[Term] +id: UBERON:0004027 +name: chorionic plate +def: "That portion of the chorionic wall in the region of its uterine attachment, which gives rise to chorionic villi; it consists of the mesoderm that lines the chorionic vesicle and, on the maternal side, of the trophoblast that lines the intervillous spaces; in the last half of gestation, the mesodermal connective tissue is largely replaced by fibrinoid material, and the amnionic membrane is adherent to the fetal side of the plate." [http://www.medilexicon.com/medicaldictionary.php?t=69523, MP:0004560] +subset: pheno_slim +xref: BTO:0002879 +xref: EMAPA:31872 +xref: http://linkedlifedata.com/resource/umls/id/C0230972 +xref: http://www.snomedbrowser.com/Codes/Details/256391000 +xref: NCIT:C34123 +xref: UMLS:C0230972 {source="ncithesaurus:Chorionic_Plate"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005292 ! extraembryonic tissue +relationship: contributes_to_morphology_of UBERON:0003124 ! chorion membrane +relationship: part_of UBERON:0003124 ! chorion membrane + +[Term] +id: UBERON:0004029 +name: canal of Schlemm +def: "The vascular structure encircling the anterior chamber of the eye, through which the aqueous humor is returned to the blood circulation" [http://en.wikipedia.org/wiki/Schlemm's_canal, MP:0005204] +subset: pheno_slim +synonym: "Schlemm's canal" EXACT [] +synonym: "scleral sinus" EXACT [FMA:51873] +synonym: "scleral venous sinus" EXACT [FMA:51873] +synonym: "sinus venosus of sclera" EXACT [FMA:51873] +synonym: "sinus venosus sclerae" EXACT LATIN [http://en.wikipedia.org/wiki/Schlemm's_canal] +xref: EMAPA:37456 {source="MA:th"} +xref: FMA:51873 +xref: http://linkedlifedata.com/resource/umls/id/C0229108 +xref: http://www.snomedbrowser.com/Codes/Details/280605006 +xref: NCIT:C32256 +xref: Schlemm's:canal +xref: UMLS:C0229108 {source="ncithesaurus:Canal_of_Schlemm"} +xref: ZFA:0005829 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0009141 ! craniocervical region vein +relationship: part_of UBERON:0003712 ! cavernous sinus +relationship: part_of UBERON:0003956 ! aqueous drainage system +relationship: tributary_of UBERON:0003712 {source="FMA/obol"} ! cavernous sinus + +[Term] +id: UBERON:0004030 +name: aqueous vein +def: "A vessel that receives aqueous humor from the sinus venosus sclerae (canal of Schlemm)" [MP:0005207] +comment: a mixture of episcleral venous blood and aqueous humor mix in this combined channel[http://www.atlasophthalmology.com] +subset: pheno_slim +xref: EMAPA:37428 {source="MA:th"} +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0009141 ! craniocervical region vein +relationship: channel_for UBERON:0001796 ! aqueous humor of eyeball +relationship: part_of UBERON:0003956 ! aqueous drainage system + +[Term] +id: UBERON:0004031 +name: head ectomesenchyme +def: "mesenchymal cells derived from neural crest cells that contribute to development of the hard and soft tissue in the head and neck, including the branchial arches[MP]." [MP:0006302] +subset: pheno_slim +synonym: "ectomesenchyme" EXACT [MP:0006302] +xref: FMA:318119 +xref: http://en.wikipedia.org/wiki/Ectomesenchyme +is_a: UBERON:0007213 {notes="consider merging"} ! mesenchyme derived from head neural crest + +[Term] +id: UBERON:0004032 +name: podocyte slit diaphragm +def: "The thin membrane that covers the podocyte filtration slit which allows small molecules such as water, glucose, and ionic salts to pass through while retaining larger macromolecules in the bloodstream" [MP:0008060] +subset: pheno_slim +is_a: UBERON:0004120 ! mesoderm-derived structure + +[Term] +id: UBERON:0004033 +name: podocyte slit junction +def: "The gaps between the interdigitated foot processes of the podocyte" [MP:0008062] +subset: pheno_slim +is_a: UBERON:0004120 ! mesoderm-derived structure + +[Term] +id: UBERON:0004034 +name: cutaneous microfibril +def: "The fiber-like strand of fibrillin that forms the scaffold of the cutaneous elastic fibers found in the extracellular matrix of the skin" [MP:0008419] +subset: pheno_slim +is_a: UBERON:0000476 ! acellular anatomical structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: contributes_to_morphology_of UBERON:0003967 ! cutaneous elastic tissue +relationship: part_of UBERON:0003967 ! cutaneous elastic tissue + +[Term] +id: UBERON:0004035 +name: cortical subplate +def: "The transient outer neural tube region that contains the first generated post-mitotic neurons that receive synaptic input from thalamic axons and in turn project axons to the developing cortical plate" [http://en.wikipedia.org/wiki/Subplate, https://github.com/obophenotype/mouse-anatomy-ontology/issues/1, MP:0008440] +subset: pheno_slim +synonym: "cerebral cortex subplate" EXACT [EMAPA:32833] +synonym: "SP" BROAD ABBREVIATION [BRAINSPAN:BRAINSPAN] +synonym: "subplate" EXACT [] +synonym: "subplate zone" EXACT [DHBA:10522] +xref: DHBA:10522 +xref: EMAPA:32703 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3233 +xref: http://en.wikipedia.org/wiki/Subplate +xref: https://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Corticogenesis_in_a_wild-type_mouse_with_captions_in_english_copy.png/360px-Corticogenesis_in_a_wild-type_mouse_with_captions_in_english_copy.png +xref: PBA:294021932 +is_a: UBERON:0014950 ! layer of developing cerebral cortex +intersection_of: UBERON:0014950 ! layer of developing cerebral cortex +intersection_of: adjacent_to UBERON:0004040 ! cortical intermediate zone +intersection_of: adjacent_to UBERON:0005343 ! cortical plate +relationship: adjacent_to UBERON:0004040 ! cortical intermediate zone +relationship: adjacent_to UBERON:0005343 ! cortical plate +relationship: develops_from UBERON:0034711 ! cortical preplate + +[Term] +id: UBERON:0004036 +name: obsolete retinal cone cell inner segment +def: "The retinal cone cell region which contains the machinery of the cell (mitochondria, golgi, endoplasmic reticulum, etc) and where opsin molecules are assembled and passed to be part of the outer segment region" [MP:0008448] +comment: request from GO as subclass of photoreceptor segment +is_obsolete: true + +[Term] +id: UBERON:0004037 +name: obsolete retinal cone cell outer segment +def: "The retinal cone cell region in which the visual pigment rhodopsin is in invaginations of the cell membrane" [MP:0008449] +comment: request from GO as subclass of photoreceptor segment +is_obsolete: true + +[Term] +id: UBERON:0004038 +name: obsolete retinal rod cell inner segment +def: "The retinal rod cell region which contains the machinery of the cell (mitochondria, golgi, endoplasmic reticulum, etc) and where opsin molecules are assembled and passed to be part of the outer segment region" [MP:0008455] +comment: request from GO as subclass of photoreceptor segment +is_obsolete: true + +[Term] +id: UBERON:0004039 +name: obsolete retinal rod cell outer segment +def: "The retinal rod cell region which contains stacks of membranous discs separate from the outer cell membrane that are rich in the visual pigment rhodopsin" [MP:0008456] +comment: request from GO as subclass of photoreceptor segment +is_obsolete: true + +[Term] +id: UBERON:0004040 +name: cortical intermediate zone +def: "The region of the developing mammalian cortex that extends between the ventricular zone and the cortical plate (CP); normally, the IZ is a region of tangential migration of cells, and at midgestation, the lower part of the IZ develops into the subventricular zone" [MP:0008457] +subset: pheno_slim +synonym: "cerebral cortex mantle layer" RELATED [EMAPA:17545] +synonym: "cerebral cortex mantle zone" RELATED [] +synonym: "cortical mantle layer" RELATED [] +synonym: "IZ" BROAD ABBREVIATION [BRAINSPAN:BRAINSPAN] +xref: EMAPA:17545 +xref: EMAPA:32712 +is_a: UBERON:0014950 ! layer of developing cerebral cortex +relationship: develops_from UBERON:0004061 ! neural tube mantle layer + +[Term] +id: UBERON:0004041 +name: spleen primary B follicle +def: "The nodules of small undifferentiated B lymphocytes and follicular dendritic cells located in the spleen white pulp" [MP:0008471] +subset: pheno_slim +synonym: "primary spleen B cell follicle" EXACT [CL:tm] +xref: EMAPA:37960 {source="MA:th"} +xref: FMA:15843 +is_a: UBERON:0001249 ! spleen lymphoid follicle +is_a: UBERON:0010422 ! primary nodular lymphoid tissue +intersection_of: UBERON:0010422 ! primary nodular lymphoid tissue +intersection_of: part_of UBERON:0002106 ! spleen + +[Term] +id: UBERON:0004042 +name: spleen secondary B follicle +def: "The nodules of antigen-activated, differentiating B cells, follicular dendritic cells, antigen-presenting T cells and macrophages in the spleen white pulp" [MP:0008472] +subset: pheno_slim +synonym: "secondary spleen B cell follicle" EXACT [CL:tm] +synonym: "splenic secondary B cell follicle" EXACT [MP:0008472] +xref: EMAPA:37961 {source="MA:th"} +is_a: UBERON:0001249 ! spleen lymphoid follicle +is_a: UBERON:0001745 ! secondary nodular lymphoid tissue +intersection_of: UBERON:0001745 ! secondary nodular lymphoid tissue +intersection_of: part_of UBERON:0002106 ! spleen +relationship: develops_from UBERON:0004041 {source="CL:tm"} ! spleen primary B follicle + +[Term] +id: UBERON:0004043 +name: semicircular canal ampulla +def: "The spherical enlargement at the base of each semicircular canal where they connect with the utricle, containing the crista ampullaris which detects movement of the fluid within the canals" [http://en.wikipedia.org/wiki/Osseous_ampullae, MP:0008488] +subset: pheno_slim +synonym: "ampullae osseae" RELATED LATIN [http://en.wikipedia.org/wiki/Osseous_ampullae] +synonym: "membraneous ampulla of the semicircular duct" RELATED [MP:0008488] +synonym: "semicircular duct ampulla" RELATED [MA:0002770] +xref: EMAPA:32831 +xref: http://www.snomedbrowser.com/Codes/Details/279759001 +xref: MA:0002770 +xref: Osseous:ampullae +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010000 ! multicellular anatomical structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001856 {source="MA"} ! semicircular duct + +[Term] +id: UBERON:0004044 +name: anterior visceral endoderm +def: "The extraembryonic tissue that is responsible for the proper orientation of the anterior-posterior axis of the embryo and for appropriate patterning of adjacent embryonic tissue" [MP:0008533] +subset: pheno_slim +synonym: "AVE" RELATED [BTO:0003361] +xref: BTO:0003361 +xref: EMAPA:36068 +is_a: UBERON:0004877 ! visceral endoderm +relationship: seeAlso UBERON:0004341 ! primitive streak + +[Term] +id: UBERON:0004045 +name: tailgut +def: "The extension of the hindgut of the primitive digestive tube of the embryo, caudal to the location of the anal opening" [MP:0008787] +subset: pheno_slim +xref: EMAPA:36331 +is_a: UBERON:0004921 ! subdivision of digestive tract +relationship: part_of UBERON:0001046 ! hindgut +relationship: part_of UBERON:0007144 ! embryonic post-anal tail + +[Term] +id: UBERON:0004046 +name: anterior definitive endoderm +def: "The mesendoderm which first migrates from the node and which gives rise to the gut" [MP:0008926] +subset: pheno_slim +is_a: UBERON:0000089 ! hypoblast (generic) + +[Term] +id: UBERON:0004047 +name: basal cistern +def: "The enclosed space where the arachnoid membrane stretches between the two temporal lobes and encloses the cerebral peduncles including the structures contained in the interpeduncular fossa" [MP:0009029] +subset: pheno_slim +synonym: "cisterna interpeduncularis" RELATED [EMAPA:19056] +synonym: "cisterna interpeduncularis" RELATED [EMAPA:19149] +synonym: "interpeduncular cistern" RELATED [EMAPA:19056, FMA:83718] +synonym: "interpeduncular cistern" RELATED [EMAPA:19149] +xref: BAMS:icis +xref: BAMS:IPCi +xref: EMAPA:19056 +xref: FMA:83718 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2353 +xref: Interpeduncular:cistern +xref: NCIT:C32866 +is_a: UBERON:0004050 ! subarachnoid cistern + +[Term] +id: UBERON:0004048 +name: pontine cistern +def: "The space located on lateral aspects of the pons at the junction with the celebellum" [MP:0009030] +subset: pheno_slim +synonym: "cisterna pontis" EXACT LATIN [FMA:83719, FMA:TA] +xref: BAMS:pcis +xref: BAMS:PoCi +xref: EMAPA:18212 +xref: FMA:83719 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=556 +xref: Pontine:cistern +is_a: UBERON:0004050 ! subarachnoid cistern +is_a: UBERON:0005219 ! hindbrain subarachnoid space +relationship: part_of UBERON:0000988 ! pons + +[Term] +id: UBERON:0004049 +name: cerebellomedullary cistern +def: "The largest of the subarachnoid cisterns between the cerebellum and the medulla oblongata; it is divided into a posterior cerebellomedullary cistern located between the cerebellum and the posterior surface of the medulla (also called cisterna magna), and a lateral cerebellomedullary cistern located between the cerebellum and the lateral aspect of the medulla." [http://www.drugs.com/dict/cerebellomedullary-cistern.html] +subset: pheno_slim +synonym: "great cistern" EXACT [FMA:74517] +xref: BAMS:cmcis +xref: BAMS:GrCi +xref: EMAPA:37814 {source="MA:th"} +xref: FMA:74517 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=542 +is_a: UBERON:0004050 ! subarachnoid cistern + +[Term] +id: UBERON:0004050 +name: subarachnoid cistern +def: "The widening portions of the subarachnoid space within the cranium where the arachnoid bridges over a depression on the surface of the brain" [http://en.wikipedia.org/wiki/Cistern_(neuroanatomy), MP:0009032] +subset: pheno_slim +synonym: "cistern" BROAD [http://en.wikipedia.org/wiki/Cistern_(neuroanatomy)] +synonym: "cisterna" BROAD LATIN [http://en.wikipedia.org/wiki/Cistern_(neuroanatomy)] +xref: BAMS:Ci +xref: Cistern:(neuroanatomy) +xref: EMAPA:37813 {source="MA:th"} +xref: FMA:83717 +xref: http://linkedlifedata.com/resource/umls/id/C0228144 +xref: http://www.snomedbrowser.com/Codes/Details/314223007 +xref: NCIT:C33640 +xref: UMLS:C0228144 {source="ncithesaurus:Subarachnoid_Cistern"} +is_a: UBERON:0000315 ! subarachnoid space + +[Term] +id: UBERON:0004051 +name: lateral cerebellomedullary cistern +def: "The space between the cerebellum and the lateral aspect of the medulla" [MP:0009034] +subset: pheno_slim +synonym: "cisterna cerebellomedullaris lateralis" EXACT [MP:0009034] +xref: EMAPA:37815 {source="MA:th"} +xref: FMA:83722 +is_a: UBERON:0004049 ! cerebellomedullary cistern +relationship: adjacent_to UBERON:0002037 ! cerebellum + +[Term] +id: UBERON:0004052 +name: quadrigeminal cistern +def: "The enclosed space extending forward between the corpus callosum and the thalamus that contains the internal cerebral veins" [MP:0009035] +subset: pheno_slim +synonym: "ambient cistern" EXACT [FMA:74511] +synonym: "cistern of great cerebral vein" EXACT [FMA:74511] +synonym: "cisterna ambiens" EXACT LATIN [FMA:74511, FMA:TA] +synonym: "cisterna quadrigeminalis" EXACT LATIN [FMA:74511, FMA:TA] +synonym: "cisterna venae magnae cerebri" EXACT LATIN [FMA:74511, FMA:TA] +synonym: "superior cistern" EXACT [FMA:74511] +xref: BAMS:scis +xref: EMAPA:37817 {source="MA:th"} +xref: FMA:74511 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=26 +xref: http://en.wikipedia.org/wiki/Cistern_of_great_cerebral_vein +xref: http://linkedlifedata.com/resource/umls/id/C0228150 +xref: http://www.snomedbrowser.com/Codes/Details/56154003 +xref: NCIT:C33444 +xref: UMLS:C0228150 {source="ncithesaurus:Quadrigeminal_Cistern"} +is_a: UBERON:0004050 ! subarachnoid cistern +relationship: adjacent_to UBERON:0002336 ! corpus callosum + +[Term] +id: UBERON:0004053 +name: external male genitalia +def: "The external masculine genital organs, including the penis and scrotum" [MP:0009199] +comment: TODO: Relabel. Make distinct organ class. See https://github.com/obophenotype/uberon/issues/547 +subset: organ_slim +subset: pheno_slim +synonym: "external male genital organ" EXACT [BTO:0003097] +synonym: "male external genitalia" EXACT [FMA:45642] +synonym: "organa genitalia masculina externa" RELATED [BTO:0003097] +xref: BTO:0003097 +xref: EMAPA:30977 +xref: FMA:45642 +xref: galen:MaleExternalGenitalia +xref: http://www.snomedbrowser.com/Codes/Details/362264000 +is_a: UBERON:0003135 ! male reproductive organ +is_a: UBERON:0004176 ! external genitalia +intersection_of: UBERON:0004176 ! external genitalia +intersection_of: part_of UBERON:0000079 ! male reproductive system +disjoint_from: UBERON:0005056 ! external female genitalia +disjoint_from: UBERON:0009196 ! indifferent external genitalia +relationship: contributes_to_morphology_of UBERON:0000079 ! male reproductive system + +[Term] +id: UBERON:0004054 +name: internal male genitalia +def: "The internal masculine genital organs, including the testes, epididymides, deferent ducts, seminal vesicles, prostate, ejaculatory ducts, and bulbourethral glands" [MP:0009205] +comment: TODO: Relabel. Make distinct organ class. See https://github.com/obophenotype/uberon/issues/547 +subset: organ_slim +subset: pheno_slim +synonym: "internal male genital organ" EXACT [BTO:0003096] +synonym: "male internal genitalia" EXACT [FMA:45655] +synonym: "organa genitalia masculina interna" RELATED [BTO:0003096] +xref: BTO:0003096 +xref: FMA:45655 +xref: http://www.snomedbrowser.com/Codes/Details/310536002 +is_a: UBERON:0003135 ! male reproductive organ +is_a: UBERON:0004175 ! internal genitalia +intersection_of: UBERON:0004175 ! internal genitalia +intersection_of: part_of UBERON:0000079 ! male reproductive system +relationship: contributes_to_morphology_of UBERON:0000079 ! male reproductive system + +[Term] +id: UBERON:0004055 +name: primitive pit +def: "The small depression in the primitive streak that is caudal to the primitive node where the cells of the epiblast initially begin to invaginate during early embryogenesis" [http://en.wikipedia.org/wiki/Primitive_pit, MP:0009329] +subset: early_development +subset: pheno_slim +xref: EHDAA2:0001521 +xref: EHDAA:551 +xref: FMA:293120 +xref: http://linkedlifedata.com/resource/umls/id/C1514439 +xref: NCIT:C34267 +xref: Primitive:pit +xref: UMLS:C1514439 {source="ncithesaurus:Primitive_Pit"} +is_a: UBERON:0016566 {source="EHDAA2"} ! pit +relationship: contributes_to_morphology_of UBERON:0004341 ! primitive streak +relationship: develops_in UBERON:0003062 {source="EHDAA2"} ! primitive knot +relationship: located_in UBERON:0006268 {source="EHDAA2"} ! notochordal process +relationship: part_of UBERON:0004341 ! primitive streak + +[Term] +id: UBERON:0004056 +name: primitive groove +def: "The shallow valley that extends along the length of the primitive streak[MP]" [http://en.wikipedia.org/wiki/Primitive_groove, MP:0009330] +subset: early_development +subset: pheno_slim +xref: EHDAA2:0001511 +xref: EHDAA:547 +xref: FMA:293118 +xref: http://linkedlifedata.com/resource/umls/id/C1514434 +xref: NCIT:C34265 +xref: Primitive:groove +xref: UMLS:C1514434 {source="ncithesaurus:Primitive_Groove"} +is_a: UBERON:0002050 ! embryonic structure +relationship: contributes_to_morphology_of UBERON:0004341 ! primitive streak +relationship: part_of UBERON:0004341 ! primitive streak + +[Term] +id: UBERON:0004057 +name: skeletal muscle fiber triad +def: "The skeletal muscle fiber structure comprised of the transverse tubule and the two associated terminal cisternae; each fiber normally has thousands of triads" [MP:0009411] +subset: pheno_slim +is_a: UBERON:0001134 ! skeletal muscle tissue + +[Term] +id: UBERON:0004058 +name: biliary ductule +def: "One of the fine terminal elements of the bile duct system, leaving the portal canal, and pursuing a course at the periphery of a lobule of the liver[BTO]. the excretory ducts of the liver that connect the interlobular ductules to the right or left hepatic duct[MP]" [BTO:0002840, MP:0009494] +subset: pheno_slim +synonym: "bile capillary" RELATED [BTO:0002840] +synonym: "bile ductule" EXACT [BTO:0002840] +synonym: "biliary ductule" EXACT [http://www.mondofacto.com/facts/dictionary?ductuli+biliferi] +synonym: "biliary ductule" RELATED [BTO:0002840] +synonym: "cholangiole" RELATED [BTO:0002840] +synonym: "ductuli biliferi" EXACT [http://www.mondofacto.com/facts/dictionary?ductuli+biliferi] +synonym: "terminal cholangiole" RELATED [http://orcid.org/0000-0002-6601-2165] +xref: BTO:0002840 +xref: EMAPA:37440 {source="MA:th"} +xref: TAO:0005164 +xref: ZFA:0005164 +is_a: UBERON:0000025 ! tube +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: adjacent_to UBERON:0001175 ! common hepatic duct +relationship: part_of UBERON:0002107 ! liver +relationship: part_of UBERON:0002394 {source="BTO"} ! bile duct + +[Term] +id: UBERON:0004059 +name: spinal cord medial motor column +def: "The subclasses of motor neurons which project their axons to axial muscles that lie close to the vertebral column; motor neurons in the lateral subdivision of the MMC project their axons to body wall muscles" [MP:0009686] +subset: pheno_slim +is_a: UBERON:0003990 ! spinal cord motor column + +[Term] +id: UBERON:0004060 +name: neural tube ventricular layer +def: "The layer of undifferentiated, proliferating cells that line the neural tube lumen that is the immediate transformation of the germinal neuroepithelium" [http://www.ncbi.nlm.nih.gov/books/NBK10047, MP:0009689] +subset: pheno_slim +synonym: "ependymal layer" BROAD [NCBIBook:NBK10047] +synonym: "neural tube ependymal layer" EXACT [NCBIBook:NBK10047] +synonym: "neural tube ependymal zone" NARROW [MP:0009689] +synonym: "neural tube ventricular germinal zone" EXACT [NCBIBook:NBK10047] +synonym: "neural tube ventricular zone" EXACT [MP:0009689] +xref: EMAPA:17152 +xref: EMAPA:35362 +xref: EMAPA_RETIRED:16783 +xref: MA:0003193 +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium +is_a: UBERON:0034706 {source="NCBIBook:NBK10047"} ! proliferating neuroepithelium +relationship: adjacent_to UBERON:0003842 ! neural tube lumen +relationship: develops_from UBERON:0004022 ! germinal neuroepithelium +relationship: immediate_transformation_of UBERON:0004022 {source="NCBIBook:NBK10047"} ! germinal neuroepithelium +relationship: part_of UBERON:0001049 ! neural tube + +[Term] +id: UBERON:0004061 +name: neural tube mantle layer +def: "The layer of glia and differentiating neurons that forms as a second layer around the germinal neuroepithium; as this develops it comes to lie between the ventricular and marginal layers and includes the basal and alar plates. Develops into neurons and glia forming a gray matter layer." [http://www.ncbi.nlm.nih.gov/books/NBK10047, MP:0009690] +subset: pheno_slim +synonym: "future brain marginal layer" RELATED [EMAPA:35360] +synonym: "neural tube intermediate zone" EXACT [http://www.ncbi.nlm.nih.gov/books/NBK10047, MP:0009690] +xref: EMAPA:17148 +xref: EMAPA:35360 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1367 +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium +is_a: UBERON:0034707 {source="NCBIBook:NBK10047"} ! differentiating neuroepithelium +relationship: adjacent_to UBERON:0004060 ! neural tube ventricular layer +relationship: adjacent_to UBERON:0004062 ! neural tube marginal layer +relationship: develops_from UBERON:0004022 {notes="by division", source="NCBIBook:NBK10047"} ! germinal neuroepithelium +relationship: part_of UBERON:0001049 ! neural tube + +[Term] +id: UBERON:0004062 +name: neural tube marginal layer +def: "The outermost layer of the neural tube that consists of axons from the developing mantle layer and will form the white matter" [http://www.ncbi.nlm.nih.gov/books/NBK10047, MP:0009691] +subset: pheno_slim +synonym: "brain marginal zone" RELATED [] +synonym: "neural tube marginal zone" EXACT [MP:0009691] +xref: EMAPA:17151 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1368 +is_a: UBERON:0005162 ! multi cell part structure +relationship: adjacent_to UBERON:0004061 ! neural tube mantle layer +relationship: develops_from UBERON:0004061 {notes="forms from axons"} ! neural tube mantle layer +relationship: part_of UBERON:0001049 ! neural tube + +[Term] +id: UBERON:0004063 +name: spinal cord alar plate +def: "The region of the mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses; the alar plate develops into the dorsal horn in the grey matter of the spinal cord" [MP:0009692] +subset: pheno_slim +synonym: "alar column spinal cord" EXACT [VHOG:0000899] +synonym: "spinal cord alar column" EXACT [MP:0009692] +synonym: "spinal cord alar lamina" EXACT [MP:0009692] +xref: EMAPA:17149 +xref: EMAPA:17581 +xref: VHOG:0000899 +is_a: UBERON:0005882 ! neural tube alar plate +intersection_of: UBERON:0005882 ! neural tube alar plate +intersection_of: part_of UBERON:0006241 ! future spinal cord +relationship: contributes_to_morphology_of UBERON:0004061 ! neural tube mantle layer +relationship: part_of UBERON:0006241 ! future spinal cord + +[Term] +id: UBERON:0004064 +name: neural tube basal plate +def: "The region of the mantle layer of the neural tube that lies ventral to the sulcus limitans and contains primarily motor neurons and interneurons." [http://en.wikipedia.org/wiki/Basal_plate_(neural_tube), http://www.ncbi.nlm.nih.gov/books/NBK10047, MP:0009693] +subset: efo_slim +subset: pheno_slim +synonym: "basal plate" EXACT [] +synonym: "basal plate of neural tube" EXACT [http://en.wikipedia.org/wiki/Basal_plate_(neural_tube)] +synonym: "motor part of neural tube" RELATED [] +synonym: "spinal cord basal plate" NARROW [MP:0009693] +synonym: "ventral part of neural tube" RELATED [] +xref: AAO:0010561 +xref: EFO:0001904 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1372 +xref: http://en.wikipedia.org/wiki/Basal_plate_(neural_tube) +xref: http://linkedlifedata.com/resource/umls/id/C1511061 +xref: NCIT:C34111 +xref: UMLS:C1511061 {source="ncithesaurus:Basal_Plate"} +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: contributes_to_morphology_of UBERON:0004061 ! neural tube mantle layer +relationship: developmentally_induced_by UBERON:0002328 {gene="Shh", source="Swenson"} ! notochord +relationship: part_of UBERON:0004061 ! neural tube mantle layer +relationship: ventral_to UBERON:0005478 ! sulcus limitans of neural tube + +[Term] +id: UBERON:0004066 +name: frontonasal prominence +alt_id: UBERON:0006237 +def: "The unpaired embryonic prominence that is formed by the tissues surrounding the forebrain vesicle and develops into the forehead and bridge of the nose/snout." [MP:0009901] +subset: pheno_slim +synonym: "embryonic frontonasal prominence" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "forebrain prominence" RELATED [MP:0009901] +synonym: "frontonasal mass" RELATED [MP:0009901] +synonym: "frontonasal process" RELATED [MP:0009901] +synonym: "prominentia frontonasalis" RELATED LATIN [http://en.wikipedia.org/wiki/Frontonasal_prominence] +xref: EHDAA2:0000578 +xref: EHDAA:4778 +xref: EMAPA:16681 +xref: FMA:293101 +xref: Frontonasal:prominence +xref: http://linkedlifedata.com/resource/umls/id/C1517321 +xref: http://www.snomedbrowser.com/Codes/Details/361486000 +xref: NCIT:C34182 +xref: UMLS:C1517321 {source="ncithesaurus:Frontonasal_Prominence"} +xref: VHOG:0001319 +is_a: UBERON:0009292 ! embryonic nasal process +relationship: intersects_midsagittal_plane_of UBERON:0000033 ! head + +[Term] +id: UBERON:0004067 +name: lateral nasal prominence +def: "The lateral area of the two branches of a horseshoe-shaped mesenchymal swelling in the future nasal region of the embryo; it separates the olfactory pit from the developing eye and the ala of the nose/snout develops from it" [http://en.wikipedia.org/wiki/Lateral_nasal_prominence, MP:0009902] +subset: pheno_slim +synonym: "lateral nasal process" EXACT [EHDAA2:0000916] +synonym: "lateral nasal swelling" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "latero-nasal process" EXACT [EMAPA:16805] +synonym: "prominentia nasalis lateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_nasal_prominence] +xref: EHDAA2:0000916 +xref: EHDAA:4786 +xref: EMAPA:16805 +xref: FMA:295864 +xref: http://en.wikipedia.org/wiki/Lateral_nasal_prominence +xref: http://www.snomedbrowser.com/Codes/Details/308880000 +is_a: UBERON:0009292 ! embryonic nasal process +disjoint_from: UBERON:0004068 {source="lexical"} ! medial nasal prominence +relationship: develops_from UBERON:0004066 {source="Wikipedia"} ! frontonasal prominence +relationship: part_of UBERON:0004066 {source="EHDAA2"} ! frontonasal prominence + +[Term] +id: UBERON:0004068 +name: medial nasal prominence +def: "The central area of the two limbs of a horseshoe-shaped mesenchymal swelling that lie medial to the olfactory placode or pit in the future nasal region of the embryo; it joins with the ipsilateral maxillary prominence in the formation of half of the upper jaw, and the nasal tip and philtrum of the upper lip develop from it" [http://en.wikipedia.org/wiki/Medial_nasal_prominence, MP:0009903] +subset: pheno_slim +synonym: "medial nasal process" EXACT [EHDAA2:0001076] +synonym: "medial nasal swelling" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "medial-nasal process" EXACT [EMAPA:16808] +synonym: "nasomedial prominence" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "prominentia nasalis medialis" EXACT LATIN [http://en.wikipedia.org/wiki/Medial_nasal_prominence] +xref: EHDAA2:0001076 +xref: EHDAA:4792 +xref: EMAPA:16808 +xref: FMA:295858 +xref: http://en.wikipedia.org/wiki/Medial_nasal_prominence +xref: http://www.snomedbrowser.com/Codes/Details/308877001 +xref: VHOG:0000804 +is_a: UBERON:0009292 ! embryonic nasal process +relationship: develops_from UBERON:0004066 {source="Wikipedia"} ! frontonasal prominence +relationship: in_lateral_side_of UBERON:0008816 ! embryonic head +relationship: part_of UBERON:0004066 {source="EHDAA2"} ! frontonasal prominence +relationship: part_of UBERON:0008816 ! embryonic head + +[Term] +id: UBERON:0004069 +name: accessory olfactory bulb +def: "The forebrain region that coordinates sensory signaling arising from the vomeronasal organ; it is located on the dorsal-posterior portion of the main olfactory bulb, and the axons that leave the accessory olfactory bulb project to targets in the amygdala and hypothalamus" [http://en.wikipedia.org/wiki/Olfactory_bulb#Accessory_olfactory_bulb, MP:0009945] +comment: Projection notes: Site of termination of vomeronasal nerve; projects to: other parts of pallial amygdala, medial amygdala, subpallial nucleus (Butler and Hodos) +subset: pheno_slim +synonym: "accessory (vomeronasal) bulb" EXACT [] +synonym: "accessory olfactory formation" RELATED [MA:0000966] +synonym: "olfactory bulb accessory nucleus" EXACT [NLXANAT:20090453] +xref: Accessory_olfactory_bulb +xref: BAMS:AOB +xref: BAMS:AOLB +xref: BTO:0004797 +xref: DMBA:15957 +xref: EMAPA:35106 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1565 +xref: MA:0000966 +xref: MBA:151 +xref: NLX:53 +xref: NLXANAT:20090453 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0005366 ! olfactory lobe +relationship: extends_fibers_into UBERON:0009121 {source="ISBN:0471888893"} ! vomeronasal nerve +relationship: part_of UBERON:0002264 {source="cjm"} ! olfactory bulb + +[Term] +id: UBERON:0004070 +name: cerebellum vermis lobule +def: "The region of a cerebellar lobule that resides in the central section of the cerebellum between the two hemispheres." [MP:0009957] +subset: pheno_slim +synonym: "lobule of vermis" EXACT [FMA:278629] +xref: EMAPA:35224 +xref: FMA:278629 +xref: MA:0002968 +xref: NLXANAT:20081223 +is_a: UBERON:0004004 ! cerebellum lobule +intersection_of: UBERON:0004004 ! cerebellum lobule +intersection_of: part_of UBERON:0004720 ! cerebellar vermis +relationship: contributes_to_morphology_of UBERON:0004720 ! cerebellar vermis +relationship: part_of UBERON:0004720 ! cerebellar vermis + +[Term] +id: UBERON:0004073 +name: cerebellum interpositus nucleus +alt_id: UBERON:0019281 +def: "The nucleus composed of the globose and emoliform nuclei of the cerebellum; in some mammalian species the globose nucleus is not distinguishable" [MP:0009984] +subset: pheno_slim +synonym: "interposed nucleus" RELATED [http://en.wikipedia.org/wiki/Interposed_nucleus] +synonym: "interposed nucleus of cerebellum" EXACT [] +synonym: "interposed nucleus of the cerebellum" EXACT [NeuroNames:1243] +synonym: "interposed nucleus of the cerebellum" RELATED [NLXANAT:20081242] +synonym: "interpositus" RELATED [http://en.wikipedia.org/wiki/Interposed_nucleus] +synonym: "interpositus nucleus" RELATED [http://en.wikipedia.org/wiki/Interposed_nucleus] +xref: DHBA:12399 +xref: DHBA:12613 +xref: DMBA:16929 +xref: EMAPA:37819 {source="MA:th"} +xref: HBA:9578 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1243 +xref: Interposed:nucleus +xref: NLXANAT:20081242 +is_a: UBERON:0008995 ! nucleus of cerebellar nuclear complex + +[Term] +id: UBERON:0004074 +name: cerebellum vermis lobule I +def: "." [MP:0009988] +subset: pheno_slim +synonym: "lingula" RELATED [MA:0000998] +synonym: "lingula (I)" EXACT [ABA:LING] +synonym: "lingula (I)" RELATED [BAMS:LING] +synonym: "lingula (l)" RELATED [BAMS:LING] +synonym: "lingula of anterior cerebellum vermis" EXACT [] +synonym: "lingula of cerebellum" EXACT [] +synonym: "lingula of vermis" RELATED [FMA:83884] +synonym: "lobule I of cerebellum vermis" EXACT [] +synonym: "lobule I of vermis" RELATED [FMA:83884] +synonym: "neuraxis lingula" EXACT [] +synonym: "vermic lobule I" EXACT [NLXANAT:20081224] +xref: BAMS:Lg +xref: BAMS:LING +xref: BIRNLEX:932 +xref: EMAPA:35225 +xref: FMA:83884 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=657 +xref: http://en.wikipedia.org/wiki/Lingula_of_cerebellum +xref: http://www.snomedbrowser.com/Codes/Details/279380005 +xref: http://www.snomedbrowser.com/Codes/Details/77232000 +xref: MA:0000998 +xref: MBA:912 +xref: NLXANAT:20081224 +is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule +relationship: contributes_to_morphology_of UBERON:0003941 ! cerebellum anterior vermis +relationship: part_of UBERON:0003941 ! cerebellum anterior vermis + +[Term] +id: UBERON:0004075 +name: cerebellum vermis lobule II +def: "." [MP:0009989] +subset: pheno_slim +synonym: "central lobule" BROAD [MA:0000999] +synonym: "central lobule of cerebellum" BROAD [] +synonym: "lobule II" EXACT [ABA:CENT2] +synonym: "lobule II of cerebellum vermis" EXACT [] +synonym: "vermic lobule II" EXACT [NLXANAT:20081225] +xref: EMAPA:35226 +xref: FMA:278635 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1054 +xref: MA:0000999 +xref: MBA:976 +xref: NLXANAT:20081225 +is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule +relationship: contributes_to_morphology_of UBERON:0003941 ! cerebellum anterior vermis +relationship: contributes_to_morphology_of UBERON:0004070 ! cerebellum vermis lobule +relationship: part_of UBERON:0003021 {source="ABA"} ! central lobule + +[Term] +id: UBERON:0004076 +name: cerebellum vermis lobule III +def: "." [MP:0009990] +subset: pheno_slim +synonym: "central lobule" BROAD [MA:0001000] +synonym: "central lobule of cerebellum" BROAD [] +synonym: "lobule III" EXACT [ABA:CENT3] +synonym: "lobule III of cerebellum vermis" EXACT [] +synonym: "vermic lobule III" EXACT [NLXANAT:20081226] +xref: DHBA:12841 +xref: EMAPA:35227 +xref: FMA:278639 +xref: HBA:12933 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1844 +xref: MA:0001000 +xref: MBA:984 +xref: NLXANAT:20081226 +is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule +relationship: contributes_to_morphology_of UBERON:0003941 ! cerebellum anterior vermis +relationship: contributes_to_morphology_of UBERON:0004070 ! cerebellum vermis lobule +relationship: part_of UBERON:0003021 {source="ABA"} ! central lobule + +[Term] +id: UBERON:0004077 +name: cerebellum vermis lobule IV +subset: pheno_slim +synonym: "culmen of cerebellum" BROAD [] +synonym: "lobule IV of cerebellum vermis" EXACT [] +synonym: "neuraxis culmen" BROAD [FMA:83886] +synonym: "vermic lobule IV" EXACT [NLXANAT:20081227] +xref: Culmen:(cerebellum) +xref: DHBA:12842 +xref: EMAPA:35228 +xref: HBA:12934 +xref: MA:0001001 +xref: MBA:992 +xref: NLXANAT:20081227 +is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule +relationship: contributes_to_morphology_of UBERON:0003941 ! cerebellum anterior vermis +relationship: contributes_to_morphology_of UBERON:0004070 ! cerebellum vermis lobule +relationship: part_of UBERON:0007763 {source="ABA"} ! cerebellum vermis culmen + +[Term] +id: UBERON:0004078 +name: cerebellum vermis lobule IX +def: "The uvula (uvular lobe) forms a considerable portion of the inferior vermis; it is separated on either side from the tonsil by the sulcus valleculC&, at the bottom of which it is connected to the tonsil by a ridge of gray matter, indented on its surface by shallow furrows, and hence called the furrowed band." [http://en.wikipedia.org/wiki/Uvula_of_cerebellum] +comment: The uvula is the second largest lobule, following the culmen. It pertains to the paleocerebellum and is separated from the nodule by the posterolateral fissure. +subset: pheno_slim +synonym: "cerebellar posterior vermis lobule IX" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/2022820] +synonym: "lobule IX of cerebellar posterior vermis" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/2022820] +synonym: "lobule IX of cerebellum vermis" EXACT [] +synonym: "lobule IX of vermis" RELATED [FMA:83883] +synonym: "neuraxis uvula" EXACT [FMA:83883] +synonym: "uvula (IX)" EXACT [ABA:UVU] +synonym: "uvula [vermis]" EXACT [] +synonym: "uvula cerebellum" RELATED [BAMS:Uvu] +synonym: "uvula of cerebellum" EXACT [FMA:83883] +synonym: "uvula of vermis of cerebellum" EXACT [] +synonym: "vermic lobule IX" EXACT [NLXANAT:20081234] +xref: BAMS:UVU +xref: BAMS:Uvu +xref: DHBA:12851 +xref: EMAPA:35229 +xref: FMA:83883 +xref: HBA:12943 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=678 +xref: http://en.wikipedia.org/wiki/Uvula_of_cerebellum +xref: MA:0001006 +xref: MBA:957 +xref: NLXANAT:20081234 +is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule +relationship: part_of UBERON:0003012 {source="NIFSTD"} ! flocculonodular lobe + +[Term] +id: UBERON:0004079 +name: cerebellum vermis lobule V +def: "." [MP:0009993] +subset: pheno_slim +synonym: "culmen" BROAD [MA:0001002] +synonym: "culmen of cerebellum" BROAD [] +synonym: "lobule V" EXACT [ABA:CUL5] +synonym: "lobule V (culmen and quadrangular lobule, posterior part)" EXACT [DHBA:CbV] +synonym: "lobule V of cerebellum vermis" EXACT [] +synonym: "neuraxis culmen" BROAD [FMA:83886] +synonym: "vermic lobule V" EXACT [NLXANAT:20081228] +xref: BAMS:CUL +xref: BAMS:Cul +xref: DHBA:12843 +xref: EMAPA:35230 +xref: HBA:12935 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1766 +xref: MA:0001002 +xref: MBA:1001 +xref: NLXANAT:20081228 +is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule +relationship: contributes_to_morphology_of UBERON:0003941 ! cerebellum anterior vermis +relationship: contributes_to_morphology_of UBERON:0004070 ! cerebellum vermis lobule +relationship: part_of UBERON:0007763 {source="ABA"} ! cerebellum vermis culmen + +[Term] +id: UBERON:0004080 +name: cerebellum vermis lobule VI +alt_id: UBERON:0000909 +alt_id: UBERON:Declive-MA_0001003 +def: "." [MP:0009994] +subset: pheno_slim +synonym: "declive" BROAD [MA:0001003] +synonym: "declive (VI)" EXACT [ABA:DEC] +synonym: "declive lobule" BROAD [MP:0009994] +synonym: "declive of cerebellum" EXACT [] +synonym: "declive of vermis" RELATED [FMA:83887] +synonym: "declive of vermis of cerebellum" EXACT [] +synonym: "lobule VI (declive and simplex lobule)" EXACT [DHBA:CbVI] +synonym: "lobule VI of cerebellum vermis" EXACT [] +synonym: "lobule VI of vermis" RELATED [FMA:83887] +synonym: "neuraxis declive" EXACT [FMA:83887] +synonym: "vermic lobule vi" EXACT [NLXANAT:20081229] +xref: BAMS:DEC +xref: DHBA:12845 +xref: EMAPA:35231 +xref: FMA:83887 +xref: HBA:12937 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=674 +xref: http://www.snomedbrowser.com/Codes/Details/279385000 +xref: MA:0001003 +xref: MBA:936 +xref: NLXANAT:20081229 +is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule +relationship: contributes_to_morphology_of UBERON:0004009 ! cerebellum posterior vermis +relationship: part_of UBERON:0004009 {source="MP"} ! cerebellum posterior vermis + +[Term] +id: UBERON:0004081 +name: cerebellum vermis lobule VII +subset: pheno_slim +synonym: "folium-tuber vermis (VII)" EXACT [ABA:FOTU] +synonym: "lobule VII of cerebellum vermis" EXACT [] +synonym: "lobule VIIA of vermis" RELATED [FMA:83889] +synonym: "vermic lobule VII" EXACT [NLXANAT:20081230] +xref: BAMS:FOTU +xref: EMAPA:35232 +xref: FMA:278651 +xref: Folium:(vermis) +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2464 +xref: http://www.snomedbrowser.com/Codes/Details/369044003 +xref: MA:0001004 +xref: MBA:944 +xref: NLXANAT:20081230 +is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule +relationship: contributes_to_morphology_of UBERON:0004009 ! cerebellum posterior vermis +relationship: part_of UBERON:0004009 ! cerebellum posterior vermis + +[Term] +id: UBERON:0004082 +name: cerebellum vermis lobule VIII +alt_id: UBERON:0002312 +def: "." [MP:0009996] +subset: pheno_slim +synonym: "cerebellum lobule VIII" EXACT [] +synonym: "lobule VIII of cerebellum vermis" EXACT [] +synonym: "lobule VIII of vermis" RELATED [FMA:83888] +synonym: "neuraxis pyramis" EXACT [] +synonym: "neuraxis pyramus" EXACT [] +synonym: "pyramis" EXACT [NLXANAT:20081233] +synonym: "pyramis of vermis of cerebellum" EXACT [FMA:83888] +synonym: "pyramus" BROAD [MA:0001005] +synonym: "pyramus" RELATED [] +synonym: "pyramus (VIII)" EXACT [ABA:PYR] +synonym: "pyramus of cerebellum" EXACT [] +synonym: "pyramus of vermis of cerebellum" EXACT [FMA:83888] +synonym: "vermic lobule VIII" EXACT [NLXANAT:20081233] +xref: BAMS:PYR +xref: EMAPA:35233 +xref: FMA:83888 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=677 +xref: MA:0001005 +xref: MBA:951 +xref: NLXANAT:20081233 +is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule +relationship: contributes_to_morphology_of UBERON:0004009 ! cerebellum posterior vermis +relationship: part_of UBERON:0004009 ! cerebellum posterior vermis + +[Term] +id: UBERON:0004083 +name: cerebellum vermis lobule X +def: "." [MP:0009997] +subset: pheno_slim +synonym: "lobule X of cerebellum vermis" EXACT [] +synonym: "lobule X of vermis of cerebellum" RELATED [FMA:83882] +synonym: "neuraxis nodule" EXACT [UBERON:cjm] +synonym: "neuraxis nodulus" EXACT [] +synonym: "nodule" BROAD [NeuroNames:681] +synonym: "nodulus" BROAD [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=681, MA:0001007] +synonym: "nodulus" RELATED [NLXANAT:20081235] +synonym: "nodulus (X)" EXACT [ABA:NOD] +synonym: "nodulus of cerebellum" EXACT [] +synonym: "nodulus of vermis of cerebellum" EXACT [] +synonym: "vermic lobule X" EXACT [NLXANAT:20081235] +xref: BAMS:NOD +xref: BIRNLEX:1165 +xref: EMAPA:35234 +xref: FMA:83882 +xref: HBA:4713 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=681 +xref: MA:0001007 +xref: MBA:968 +xref: NLXANAT:20081235 +is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule +relationship: contributes_to_morphology_of UBERON:0003012 ! flocculonodular lobe +relationship: part_of UBERON:0003012 {source="NIFSTD"} ! flocculonodular lobe + +[Term] +id: UBERON:0004084 +name: genital labium +def: "One of the folds of skin which form the inner lips (labia minora) and outer lips (labia majora) on both sides of the vaginal opening." [MP:0003511] +subset: pheno_slim +synonym: "genital labia" EXACT PLURAL [] +synonym: "labia" EXACT PLURAL [] +synonym: "labium" EXACT [MA:0002464] +xref: CALOHA:TS-2210 +xref: EMAPA:30837 +xref: FMA:321903 +xref: galen:Labia +xref: http://linkedlifedata.com/resource/umls/id/C0227759 +xref: MA:0002464 +xref: NCIT:C52559 +xref: UMLS:C0227759 {source="ncithesaurus:Labium"} +is_a: UBERON:0000014 ! zone of skin +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0015212 ! lateral structure +relationship: contributes_to_morphology_of UBERON:0005056 ! external female genitalia +relationship: in_lateral_side_of UBERON:0005056 {source="FMA-abduced-lr"} ! external female genitalia +relationship: part_of UBERON:0000997 {source="MA"} ! mammalian vulva + +[Term] +id: UBERON:0004085 +name: labium majora +def: "One of the folds of skin which form the outer lips on both sides of the vaginal opening" [MP:0003515] +subset: pheno_slim +synonym: "labia majorum" EXACT [] +synonym: "labium majora" EXACT [] +synonym: "labium majorum" EXACT [MA:0002844] +synonym: "labium majus" EXACT [] +synonym: "labium majus pudendi" RELATED LATIN [http://en.wikipedia.org/wiki/Labia_majora] +xref: FMA:20367 +xref: galen:LabiaMajora +xref: http://linkedlifedata.com/resource/umls/id/C0227760 +xref: http://www.snomedbrowser.com/Codes/Details/362237001 +xref: Labia:majora +xref: MA:0002844 +xref: NCIT:C12306 +xref: UMLS:C0227760 {source="ncithesaurus:Labium_Majus"} +is_a: UBERON:0004084 ! genital labium +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: develops_from UBERON:0011755 {notes="posterior labial commissure", source="Wikipedia"} ! female labial swelling + +[Term] +id: UBERON:0004086 +name: brain ventricle +def: "one of the system of communicating cavities in the brain that are continuous with the central canal of the spinal cord, that like it are derived from the medullary canal of the embryo, that are lined with an epithelial ependyma, and that contain a serous fluid" [https://github.com/obophenotype/uberon/issues/300] +subset: efo_slim +subset: pheno_slim +synonym: "brain ventricles" EXACT PLURAL [] +synonym: "cerebral ventricle" EXACT [HP:0002118] +synonym: "region of ventricular system of brain" EXACT [FMA:78447] +xref: BIRNLEX:1356 +xref: BTO:0001442 +xref: EFO:0001914 +xref: EMAPA:32674 +xref: FMA:78447 +xref: HBA:9418 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2497 +xref: http://linkedlifedata.com/resource/umls/id/C0007799 +xref: http://www.snomedbrowser.com/Codes/Details/180929003 +xref: MA:0000818 +xref: MESH:D002552 +xref: NCIT:C12356 +xref: OpenCyc:Mx4rvmTY65wpEbGdrcN5Y29ycA +xref: UMLS:C0007799 {source="ncithesaurus:Ventricle_Brain"} +is_a: UBERON:0003947 ! brain ventricle/choroid plexus +is_a: UBERON:0005358 ! ventricle of nervous system +property_value: dc-contributor https://github.com/cmungall +relationship: part_of UBERON:0005282 ! ventricular system of brain + +[Term] +id: UBERON:0004087 +name: vena cava +def: "Any of the veins that carries deoxygenated blood from a part of the body into the right atrium of the heart." [http://en.wikipedia.org/wiki/Venae_cavae, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "caval vein" RELATED [] +synonym: "venae cavae" RELATED PLURAL [http://en.wikipedia.org/wiki/Venae_cavae] +xref: AAO:0010215 +xref: BTO:0001438 +xref: EMAPA:18415 +xref: FMA:321896 +xref: GAID:547 +xref: http://linkedlifedata.com/resource/umls/id/C0042460 +xref: http://www.snomedbrowser.com/Codes/Details/244405007 +xref: MA:0000068 +xref: MESH:D014684 +xref: NCIT:C12817 +xref: OpenCyc:Mx4rkJQ4U6gEEdudWQACs5b6Bw +xref: UMLS:C0042460 {source="ncithesaurus:Vena_Cava"} +xref: Venae:cavae +is_a: UBERON:0003479 ! thoracic cavity vein +is_a: UBERON:0013768 ! great vessel of heart + +[Term] +id: UBERON:0004088 +name: orbital region +def: "The subdivision of the face that includes the eye (eyeball plus adnexa such as eyelids) and the orbit of the skull and associated parts of the face such as the eyebrows, if present" [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "content of orbital part of eye" EXACT [FMA:260119] +synonym: "eye region" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "ocular and peri-ocular region" RELATED [] +synonym: "ocular region" RELATED [] +synonym: "orbital content" RELATED [FMA:260119] +synonym: "orbital part of eye" RELATED [FMA:72951] +synonym: "orbital part of face" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: FMA:260119 +is_a: UBERON:0001444 ! subdivision of head +relationship: part_of UBERON:0001456 ! face + +[Term] +id: UBERON:0004089 +name: midface +def: "The middle of the face including the nose and its associated bony structures[MW]." [HP:0000309, http://www.merriam-webster.com/medical/midface] +subset: pheno_slim +synonym: "lower face" RELATED [] +synonym: "midface/lower face" RELATED [] +synonym: "snout" RELATED SENSU [MA:0001910] +xref: EMAPA:32806 +xref: FMA:285406 +xref: MA:0001910 +is_a: UBERON:0001444 ! subdivision of head +relationship: contributes_to_morphology_of UBERON:0001456 ! face +relationship: part_of UBERON:0001456 ! face + +[Term] +id: UBERON:0004090 +name: periorbital region +def: "." [HP:0000606] +subset: pheno_slim +synonym: "periorbita" EXACT [FMA:59351] +synonym: "periorbital area" EXACT [MA:0002875] +xref: FMA:59351 +xref: http://en.wikipedia.org/wiki/Periorbita +xref: http://www.snomedbrowser.com/Codes/Details/362646004 +xref: MA:0002875 +is_a: UBERON:0034921 ! multi organ part structure +relationship: has_part UBERON:0002515 ! periosteum +relationship: part_of UBERON:0001456 ! face +relationship: surrounds UBERON:0004867 ! orbital cavity + +[Term] +id: UBERON:0004092 +name: hypothalamus-pituitary axis +def: "." [HP:0000864] +subset: pheno_slim +is_a: UBERON:0000467 ! anatomical system +relationship: part_of UBERON:0000949 ! endocrine system + +[Term] +id: UBERON:0004096 +name: odontoid process of cervical vertebra 2 +alt_id: UBERON:0005210 +def: "The toothlike process on the upper surface of the axis, which articulates with the atlas above[GAID]." [GAID:238, HP:0003310, http://en.wikipedia.org/wiki/Dens_(anatomy)] +subset: pheno_slim +synonym: "axis dens" EXACT [FMA:24043] +synonym: "axis odontoid process" EXACT [MA:0002872] +synonym: "cervical vertebra 2 odontoid process" EXACT [MA:0002872] +synonym: "dens" EXACT [EMAPA:26535] +synonym: "dens axis" EXACT LATIN [FMA:24043, FMA:TA] +synonym: "dens of axis" EXACT [FMA:24043] +synonym: "odontoid" RELATED [http://en.wikipedia.org/wiki/Dens_(anatomy)] +synonym: "odontoid process" EXACT [FMA:24043] +synonym: "odontoid process of axis" EXACT [FMA:24043] +xref: AAO:0000721 +xref: Dens:(anatomy) +xref: EMAPA:26535 +xref: FMA:24043 +xref: GAID:238 +xref: http://linkedlifedata.com/resource/umls/id/C0028881 +xref: http://www.snomedbrowser.com/Codes/Details/181899003 +xref: MA:0002872 +xref: MESH:D009809 +xref: NCIT:C86970 +xref: OpenCyc:Mx4rwIYGoJwpEbGdrcN5Y29ycA +xref: UMLS:C0028881 {source="ncithesaurus:Odontoid_Process"} +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0001093 ! vertebral bone 2 + +[Term] +id: UBERON:0004097 +name: obsolete renin-aldosterone axis +def: "." [HP:0003350] +is_obsolete: true + +[Term] +id: UBERON:0004098 +name: tibial plateaux +def: "." [HP:0003832] +subset: pheno_slim +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +relationship: part_of UBERON:0000979 ! tibia + +[Term] +id: UBERON:0004099 +name: joint space of elbow +def: "Joint cavity shared by all the joints of the elbow. The elbow joint is a compound joint that actually comprises three separate joints: the joints connecting the upper and lower arm: 1) Articulatio humero-ulnaris and 2) Articulatio humero-radialis as well as the proximal joint connecting the forarm bones: 3) Articulatio radio-ulnaris proximalis. All three share a joint cavity which is highly sinuated/scalloped/coved. Joint spaces of the elbow summarizes the joint cavity shared by all three adjoining joints of the elbow joint." [HP:0003943] +subset: pheno_slim +synonym: "synovial cavity of elbow joint" EXACT [FMA:38911] +xref: FMA:38911 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0001490 ! elbow joint +relationship: luminal_space_of UBERON:0001490 ! elbow joint +relationship: part_of UBERON:0001490 ! elbow joint + +[Term] +id: UBERON:0004100 +name: renal collecting system +def: "The collecting duct system of the kidney consists of a series of tubules and ducts that connect the nephrons to the ureter. It participates in electrolyte and fluid balance through reabsorption and excretion, processes regulated by the hormones aldosterone and antidiuretic hormone." [HP:0004742, http://en.wikipedia.org/wiki/Collecting_duct_system] +subset: pheno_slim +synonym: "collecting duct system" EXACT [http://en.wikipedia.org/wiki/Collecting_duct_system] +synonym: "kidney collecting duct system" EXACT [http://en.wikipedia.org/wiki/Collecting_duct_system] +synonym: "tubulus renalis colligens" RELATED LATIN [http://en.wikipedia.org/wiki/Collecting_duct_system] +xref: FMA:265239 +xref: http://en.wikipedia.org/wiki/Collecting_duct_system +xref: http://www.snomedbrowser.com/Codes/Details/279371005 +is_a: UBERON:0000467 ! anatomical system +relationship: part_of UBERON:0002113 ! kidney + +[Term] +id: UBERON:0004101 +name: nasolabial region +def: "." [HP:0005289] +subset: pheno_slim +is_a: UBERON:0001444 ! subdivision of head +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0000004 ! nose + +[Term] +id: UBERON:0004103 +name: alveolar ridge +def: "one of the two jaw ridges either on the roof of the mouth between the upper teeth and the hard palate or on the bottom of the mouth behind the lower teeth[WP]. The alveolar ridges contain the sockets (alveoli) of the teeth[HP]." [HP:0006477, http://en.wikipedia.org/wiki/Alveolar_ridge] +subset: pheno_slim +synonym: "alveolar body" EXACT [MP:0004189] +synonym: "alveolar bone" EXACT [MP:0004189] +synonym: "alveolar margin" EXACT [] +synonym: "alveolar process" EXACT [] +synonym: "margo alveolaris" EXACT LATIN [] +xref: Alveolar:ridge +xref: BTO:0001383 +xref: EMAPA:35118 +xref: FMA:313923 +xref: GAID:215 +xref: http://linkedlifedata.com/resource/umls/id/C0447411 +xref: http://www.snomedbrowser.com/Codes/Details/245790000 +xref: MA:0003119 +xref: MESH:D000539 +xref: NCIT:C89749 +xref: UMLS:C0447411 {source="ncithesaurus:Alveolar_Ridge"} +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: has_developmental_contribution_from UBERON:0008969 {source="http://www.ncbi.nlm.nih.gov/pubmed/19767574", source="Wikipedia"} ! dental follicle +relationship: part_of UBERON:0001708 ! jaw skeleton + +[Term] +id: UBERON:0004104 +name: hairline +def: "Anatomical line demarcating the boundary between forehead and scalp." [http://en.wikipedia.org/wiki/Hairline] +subset: pheno_slim +xref: FMA:285412 +is_a: UBERON:0006800 ! anatomical line +intersection_of: UBERON:0006800 ! anatomical line +intersection_of: connects UBERON:0000403 ! scalp +intersection_of: connects UBERON:0008200 ! forehead +relationship: connects UBERON:0000403 ! scalp +relationship: connects UBERON:0008200 ! forehead +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0004105 +name: subungual region +def: "Region beneath a nail or claw." [https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +xref: CALOHA:TS-2351 +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0001705 ! nail + +[Term] +id: UBERON:0004106 +name: crus of ear +def: "horizontal piece of cartilage located outside the ear canal that divides the upper and lower parts of the ear." [HP:0009895] +subset: pheno_slim +synonym: "crus helicis" EXACT LATIN [FMA:61024, FMA:TA] +synonym: "crus of helical part of auricular cartilage" EXACT [] +synonym: "crus of helix" EXACT [FMA:61024] +xref: FMA:61024 +xref: http://linkedlifedata.com/resource/umls/id/C0229319 +xref: http://www.snomedbrowser.com/Codes/Details/362547004 +xref: NCIT:C32410 +xref: UMLS:C0229319 {source="ncithesaurus:Crus_Helicis"} +is_a: UBERON:0001867 ! cartilage of external ear +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0016611 {source="Wikipedia-uncited"} ! auditory hillocks, pharyngeal arch 1 derived +relationship: part_of UBERON:0001848 ! auricular cartilage + +[Term] +id: UBERON:0004108 +name: clivus of occipital bone +def: "Part of the cranium, the clivus is a shallow depression behind the dorsum sellC& that slopes obliquely backward. It forms a gradual sloping process at the anterior most portion of the basilar occipital bone at its junction with the sphenoid bone. On axial planes, it sits just posterior to the sphenoid sinuses. Just lateral to the clivus bilaterally is the foramen lacerum which contains the internal carotid artery, proximal to its anastamosis with the Circle of Willis. Posterior to the clivus is the basilar artery. The clivus supports the upper part of the pons." [HP:0010558, http://en.wikipedia.org/wiki/Clivus_(anatomy)] +comment: The clivus is an important landmark for checking for anatomical atlanto-occipital alignment; the clivus, when viewed on a lateral C-spine X-ray, forms a line which, if extended, is known as Wackenheim's clivus line. Wackenheim's clivus line should pass through the dens of the axis or be tangential to it. +subset: pheno_slim +synonym: "clivus" EXACT [HP:0010558] +synonym: "clivus ossis occipitalis" RELATED [FMA:75747] +synonym: "occipital bone clivus" EXACT [FMA:75747] +synonym: "Wackenheim's clivus line" RELATED [http://en.wikipedia.org/wiki/Clivus_(anatomy)] +xref: Clivus:(anatomy) +xref: FMA:75747 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=674 +xref: http://linkedlifedata.com/resource/umls/id/C0222724 +xref: http://www.snomedbrowser.com/Codes/Details/361736007 +xref: NCIT:C12494 +xref: UMLS:C0222724 {source="ncithesaurus:Clivus"} +is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ +relationship: adjacent_to UBERON:0001677 {source="Wikipedia"} ! sphenoid bone +relationship: located_in UBERON:0008788 {source="HP:0010558"} ! posterior cranial fossa +relationship: part_of UBERON:0001676 {source="FMA"} ! occipital bone + +[Term] +id: UBERON:0004109 +name: cortex of humerus +def: "The outer or sperficial part of the humerus." [PHENOSCAPE:ad] +subset: pheno_slim +synonym: "compact bone of humerus" EXACT [FMA:31542] +synonym: "cortex of the humerus" EXACT [] +synonym: "humerus compact bone" EXACT [] +synonym: "humerus cortical bone" EXACT [] +xref: FMA:31542 +is_a: UBERON:0001439 ! compact bone tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004269 ! upper arm connective tissue +is_a: UBERON:0005808 ! bone tissue of long bone +intersection_of: UBERON:0001439 ! compact bone tissue +intersection_of: part_of UBERON:0000976 ! humerus +relationship: part_of UBERON:0000976 ! humerus + +[Term] +id: UBERON:0004110 +name: midnasal cavity +def: "An anatomical cavity that is the combination of the cavity between the nares and the choanae[HP,modified]." [HP:0010641] +subset: pheno_slim +xref: FMA:59675 +is_a: UBERON:0002553 ! anatomical cavity +relationship: adjacent_to UBERON:0004771 ! posterior nasal aperture +relationship: adjacent_to UBERON:0005928 ! external naris +relationship: part_of UBERON:0001707 ! nasal cavity + +[Term] +id: UBERON:0004111 +name: anatomical conduit +def: "Any tube, opening or passage that connects two distinct anatomical spaces." [http://orcid.org/0000-0002-6601-2165] +synonym: "foramen" NARROW [EHDAA2:0003080] +synonym: "foramina" NARROW PLURAL [https://orcid.org/0000-0002-6601-2165] +synonym: "opening" RELATED [] +synonym: "ostia" RELATED PLURAL [] +synonym: "ostium" RELATED [] +xref: AEO:0000080 +xref: EHDAA2:0003080 +xref: FMA:242873 +xref: http://en.wikipedia.org/wiki/Foramen +xref: http://www.snomedbrowser.com/Codes/Details/346902003 +is_a: UBERON:0010000 ! multicellular anatomical structure +intersection_of: UBERON:0010000 ! multicellular anatomical structure +intersection_of: conduit_for UBERON:0000061 ! anatomical structure +intersection_of: has_part UBERON:0013686 ! anatomical conduit space +relationship: conduit_for UBERON:0000061 ! anatomical structure +relationship: connects UBERON:0000464 {minCardinality="2", maxCardinality="2"} ! anatomical space +relationship: has_part UBERON:0013686 ! anatomical conduit space + +[Term] +id: UBERON:0004113 +name: muscle of auditory ossicle +alt_id: UBERON:0004112 +def: "A muscle of the tympanic cavity that attaches to an auditory ossicle." [http://orcid.org/0000-0002-6601-2165] +synonym: "auditory ossicles muscle" EXACT [FMA:49026] +synonym: "muscle of auditory ossicles" EXACT [FMA:49026] +synonym: "muscle of middle ear" RELATED [] +synonym: "muscle of tympanic cavity" EXACT [] +synonym: "ossicular muscle" EXACT [FMA:49026] +synonym: "tympanic cavity muscle" EXACT [MA:0000256] +xref: EMAPA:37776 {source="MA:th"} +xref: FMA:49026 +xref: http://en.wikipedia.org/wiki/Muscles_of_auditory_ossicles +xref: http://linkedlifedata.com/resource/umls/id/C1513769 +xref: http://www.snomedbrowser.com/Codes/Details/244778009 +xref: MA:0000256 +xref: NCIT:C33148 +xref: UMLS:C1513769 {source="ncithesaurus:Muscle_of_the_Tympanum"} +is_a: UBERON:0002376 {source="FMA"} ! cranial muscle +intersection_of: UBERON:0001630 ! muscle organ +intersection_of: attaches_to UBERON:0001686 ! auditory ossicle bone +relationship: attaches_to UBERON:0001686 ! auditory ossicle bone +relationship: located_in UBERON:0004114 ! tympanic cavity +relationship: part_of UBERON:0001756 ! middle ear + +[Term] +id: UBERON:0004114 +name: tympanic cavity +def: "small cavity surrounding the bones of the middle ear." [http://en.wikipedia.org/wiki/Tympanic_cavity] +synonym: "anatomical cavity of middle ear" EXACT [OBOL:automatic] +synonym: "cavitas tympani" EXACT LATIN [http://en.wikipedia.org/wiki/Tympanic_cavity] +synonym: "cavitas tympanica" RELATED [BTO:0002098] +synonym: "cavity of middle ear" EXACT [OBOL:automatic] +synonym: "middle ear cavity" EXACT [OBOL:automatic] +synonym: "middle-ear cavity" EXACT [OBOL:automatic] +synonym: "tympanum" RELATED [BTO:0002098] +xref: BTO:0002098 +xref: EHDAA2:0004119 +xref: EMAPA:37778 {source="MA:th"} +xref: EV:0100358 +xref: FMA:56461 +xref: http://www.snomedbrowser.com/Codes/Details/362551002 +xref: Tympanic:cavity +is_a: UBERON:0002553 ! anatomical cavity +is_a: UBERON:0005082 ! tube lumen +is_a: UBERON:0010064 {source="EHDAA2"} ! open anatomical space +intersection_of: UBERON:0002553 ! anatomical cavity +intersection_of: luminal_space_of UBERON:0001756 ! middle ear +relationship: developmentally_replaces UBERON:0005625 {source="EHDAA2"} ! tubotympanic recess lumen +relationship: luminal_space_of UBERON:0001756 ! middle ear +relationship: part_of UBERON:0001756 ! middle ear +relationship: surrounded_by UBERON:0010063 ! tympanic cavity epithelium +relationship: surrounds UBERON:0001686 ! auditory ossicle bone + +[Term] +id: UBERON:0004115 +name: blood vessel of tympanic cavity +def: "A blood vessel that is part of a tympanic cavity [Automatically generated definition]." [OBOL:automatic] +synonym: "anatomical cavity of middle ear blood vessel" EXACT [OBOL:automatic] +synonym: "blood vessel of anatomical cavity of middle ear" EXACT [OBOL:automatic] +synonym: "blood vessel of cavity of middle ear" EXACT [OBOL:automatic] +synonym: "blood vessel of middle ear anatomical cavity" EXACT [OBOL:automatic] +synonym: "blood vessel of middle ear cavity" EXACT [OBOL:automatic] +synonym: "cavity of middle ear blood vessel" EXACT [OBOL:automatic] +synonym: "middle ear anatomical cavity blood vessel" EXACT [OBOL:automatic] +synonym: "middle ear blood vessel" EXACT [] +synonym: "middle ear cavity blood vessel" EXACT [OBOL:automatic] +synonym: "tympanic cavity blood vessel" EXACT [] +xref: EMAPA:37775 {source="MA:th"} +xref: MA:0001219 +is_a: UBERON:0003496 ! head blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: located_in UBERON:0004114 ! tympanic cavity +relationship: located_in UBERON:0004114 ! tympanic cavity +relationship: part_of UBERON:0001756 ! middle ear + +[Term] +id: UBERON:0004116 +name: nerve of tympanic cavity +def: "A nerve that is part of a tympanic cavity [Automatically generated definition]." [OBOL:automatic] +synonym: "anatomical cavity of middle ear nerve" EXACT [OBOL:automatic] +synonym: "cavity of middle ear nerve" EXACT [OBOL:automatic] +synonym: "middle ear anatomical cavity nerve" EXACT [OBOL:automatic] +synonym: "middle ear cavity nerve" EXACT [OBOL:automatic] +synonym: "nerve of anatomical cavity of middle ear" EXACT [OBOL:automatic] +synonym: "nerve of cavity of middle ear" EXACT [OBOL:automatic] +synonym: "nerve of middle ear anatomical cavity" EXACT [OBOL:automatic] +synonym: "nerve of middle ear cavity" EXACT [OBOL:automatic] +synonym: "tympanic cavity nerve" EXACT [] +synonym: "tympanic cavity nerves" EXACT [MA:0001222] +xref: EMAPA:37777 {source="MA:th"} +xref: MA:0001222 +is_a: UBERON:0011779 ! nerve of head region +intersection_of: UBERON:0001021 ! nerve +intersection_of: located_in UBERON:0004114 ! tympanic cavity +relationship: located_in UBERON:0004114 ! tympanic cavity +relationship: part_of UBERON:0001756 ! middle ear + +[Term] +id: UBERON:0004117 +name: pharyngeal pouch +def: "An internal pocketing of pharyngeal endoderm that contacts a region of ectoderm (a pharyngeal cleft) and interdigitates in the anterior and posterior directions with the pharyngeal arches." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/23020903, ZFA:0001106] +comment: The pouches are polarized structures. For example, whereas the rostral half of each pouch expresses Bmp-7, the caudal half expresses FGF-8 and the dorsal aspect of each pouch is marked via its expression of Pax-1. each pouch has an individual sense of identity. Shh expression is a prominent early feature of the caudal endoderm of the second arch, and individual pouches mark the anterior limits of expression of Hox genes within the pharyngeal endoderm; Hox-a2 has a rostral boundary at the second pouch, Hox-a3 at the third pouch and Hox-a4 at the most caudal pouch[PMID:16313389] +subset: efo_slim +subset: pheno_slim +subset: vertebrate_core +synonym: "branchial pouch" EXACT [http://en.wikipedia.org/wiki/Branchial_pouch] +synonym: "pharyngeal pouches" RELATED [VHOG:0001203] +synonym: "visceral pouch" EXACT SENSU [] +synonym: "visceral pouches" RELATED [VHOG:0001203] +xref: AAO:0011113 +xref: EFO:0003627 +xref: EHDAA:1086 +xref: EHDAA:1669 +xref: EHDAA:579 +xref: EHDAA:617 +xref: EMAPA:32752 +xref: FMA:293063 +xref: http://en.wikipedia.org/wiki/Pharyngeal_pouch_(embryology) +xref: http://linkedlifedata.com/resource/umls/id/C0231067 +xref: http://www.snomedbrowser.com/Codes/Details/34674002 +xref: NCIT:C34252 +xref: TAO:0001106 +xref: UMLS:C0231067 {source="ncithesaurus:Pharyngeal_Pouch"} +xref: VHOG:0001203 +xref: XAO:0000282 +xref: ZFA:0001106 +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:0003258 ! endoderm of foregut +is_a: UBERON:0005291 ! embryonic tissue +relationship: develops_from UBERON:0007690 {source="EHDAA2", source="ZFA"} ! early pharyngeal endoderm +relationship: part_of UBERON:0008814 ! pharyngeal arch system + +[Term] +id: UBERON:0004118 +name: vasculature of iris +def: "A vasculature that is part of a iris [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "iris blood vessels" EXACT [ZFA:0005568] +synonym: "iris vascular network" EXACT [OBOL:automatic] +synonym: "iris vasculature" EXACT [] +synonym: "vascular network of iris" EXACT [OBOL:automatic] +xref: ZFA:0005568 +is_a: UBERON:0002203 ! vasculature of eye +intersection_of: UBERON:0002049 ! vasculature +intersection_of: part_of UBERON:0001769 ! iris +relationship: part_of UBERON:0001769 ! iris + +[Term] +id: UBERON:0004119 +name: endoderm-derived structure +def: "An anatomical structure that develops (entirely or partially) from the endoderm." [https://orcid.org/0000-0002-6601-2165] +subset: grouping_class +is_a: UBERON:0000061 ! anatomical structure +intersection_of: UBERON:0000061 ! anatomical structure +intersection_of: develops_from UBERON:0000925 ! endoderm +relationship: develops_from UBERON:0000925 ! endoderm + +[Term] +id: UBERON:0004120 +name: mesoderm-derived structure +def: "An anatomical structure that develops (entirely or partially) from the mesoderm." [https://orcid.org/0000-0002-6601-2165] +subset: grouping_class +synonym: "mesodermal derivative" EXACT [FBbt:00025998] +xref: FBbt:00025998 +is_a: UBERON:0000061 ! anatomical structure +intersection_of: UBERON:0000061 ! anatomical structure +intersection_of: develops_from UBERON:0000926 ! mesoderm +relationship: develops_from UBERON:0000926 ! mesoderm + +[Term] +id: UBERON:0004121 +name: ectoderm-derived structure +def: "An anatomical structure that develops (entirely or partially) from the ectoderm." [https://orcid.org/0000-0002-6601-2165] +subset: grouping_class +synonym: "ectodermal deriviative" EXACT [FBbt:00025990] +xref: FBbt:00025990 +is_a: UBERON:0000061 ! anatomical structure +intersection_of: UBERON:0000061 ! anatomical structure +intersection_of: develops_from UBERON:0000924 ! ectoderm +relationship: develops_from UBERON:0000924 ! ectoderm + +[Term] +id: UBERON:0004122 +name: genitourinary system +def: "Anatomical system that has as its parts the organs concerned with the production and excretion of urine and those concerned with reproduction." [VHOG:0000286] +subset: efo_slim +subset: pheno_slim +synonym: "genito-urinary system" RELATED [FMA:280610] +synonym: "genitourinary tract" RELATED [] +synonym: "GU tract" RELATED [] +synonym: "UG tract" RELATED [] +synonym: "urogenital system" EXACT [] +synonym: "urogenital tract" RELATED [BTO:0003091] +synonym: "Urogenitalsystem" RELATED [BTO:0003091] +xref: AAO:0000624 +xref: BILA:0000122 +xref: BTO:0003091 +xref: EFO:0003864 +xref: EHDAA:1013 +xref: EMAPA:16367 +xref: EV:0100094 +xref: FMA:280610 +xref: GAID:362 +xref: galen:GenitoUrinarySystem +xref: http://linkedlifedata.com/resource/umls/id/C0042066 +xref: http://www.snomedbrowser.com/Codes/Details/278861008 +xref: MESH:D014566 +xref: NCIT:C12810 +xref: OpenCyc:Mx4rQRpVMgAKEdyHxgDggVfs8g +xref: UMLS:C0042066 {source="ncithesaurus:Genitourinary_System"} +xref: VHOG:0000286 +xref: XAO:0000140 +is_a: UBERON:0000467 ! anatomical system +intersection_of: UBERON:0000467 ! anatomical system +intersection_of: has_part UBERON:0000990 ! reproductive system +intersection_of: has_part UBERON:0001008 ! renal system +relationship: existence_ends_during UBERON:0000066 ! fully formed stage +relationship: has_part UBERON:0000990 ! reproductive system +relationship: has_part UBERON:0001008 ! renal system + +[Term] +id: UBERON:0004123 +name: myocardial layer +def: "Any of the layers of the myocardium. Example: compact layer, trabecular layer." [http://orcid.org/0000-0002-6601-2165] +subset: non_informative +subset: pheno_slim +synonym: "layer of myocardium" EXACT [] +synonym: "myocardium layer" EXACT [] +xref: EMAPA:37475 {source="MA:th"} +xref: MA:0000080 +is_a: UBERON:0005983 ! heart layer +intersection_of: UBERON:0004923 ! organ component layer +intersection_of: layer_part_of UBERON:0002349 ! myocardium +relationship: layer_part_of UBERON:0002349 ! myocardium +relationship: part_of UBERON:0002349 ! myocardium + +[Term] +id: UBERON:0004124 +name: myocardium trabecular layer +def: "The layer of the myocardium composed of projections of contractile myocytes. The trabecular layer is bounded internally by the endocardium. In zebrafish, unlike the trabeculations of higher vertebrates, both atrial and ventricular trabeculae have more strut-like character, and are more uniform without apparent regional differences[ZFA]." [ZFA:0005059] +subset: efo_slim +subset: vertebrate_core +synonym: "heart muscle trabecula" RELATED [] +synonym: "heart muscle trabeculae" RELATED PLURAL [] +synonym: "myocardial trabeculae carneae" RELATED PLURAL [] +synonym: "myocardial trabecular layer" EXACT [] +synonym: "trabecula of heart muscle" RELATED [] +synonym: "trabeculae" RELATED [TAO:0005059] +synonym: "trabecular layer" EXACT [ZFA:0005059] +xref: EFO:0003706 +xref: MA:0002866 +xref: TAO:0005059 +xref: ZFA:0005059 +is_a: UBERON:0004123 ! myocardial layer +relationship: adjacent_to UBERON:0002165 ! endocardium + +[Term] +id: UBERON:0004125 +name: myocardial compact layer +def: "outer dense layer of the myocardium uniting the epicardium and myocardium[MP]." [MP:0004056] +subset: pheno_slim +synonym: "compact subepicardial layer" EXACT [MP:0004056] +synonym: "compact subepicardial myocardium" RELATED [MP:0004056] +synonym: "heart compact layer" EXACT [MP:0004056] +synonym: "myocardial compact layer" EXACT [MP:0004056] +synonym: "myocardium compact layer" EXACT [MA:0002865] +synonym: "subepicardial layer" EXACT [MP:0004056] +synonym: "subepicardium" EXACT [MP:0004056] +synonym: "subepicardium layer" RELATED [MP:0004056] +xref: MA:0002865 +is_a: UBERON:0004123 ! myocardial layer +relationship: contributes_to_morphology_of UBERON:0002349 ! myocardium + +[Term] +id: UBERON:0004126 +name: trabecular layer of ventricle +def: "A myocardium trabecular layer that is part of a cardiac ventricle." [OBOL:automatic] +subset: vertebrate_core +synonym: "myocardium of region of ventricle" EXACT [FMA:83511] +synonym: "trabecular cardiac ventricle muscle" EXACT [GO:0003222] +synonym: "ventricular trabecular myocardium" EXACT [GO:0003222] +xref: FMA:83511 +xref: TAO:0005060 +xref: ZFA:0005060 +is_a: UBERON:0004124 ! myocardium trabecular layer +intersection_of: UBERON:0004124 ! myocardium trabecular layer +intersection_of: part_of UBERON:0002082 ! cardiac ventricle +relationship: part_of UBERON:0001083 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! myocardium of ventricle + +[Term] +id: UBERON:0004127 +name: compact layer of ventricle +def: "The outer layer the ventricular myocardium, muscle fibers are arranged in a compact form and involved the entire ventricle." [ZFA:0005062] +subset: pheno_slim +synonym: "compact cardiac ventricle muscle" EXACT [] +synonym: "ventricle myocardium compact zone" EXACT [MP:0010556] +synonym: "ventricular compact myocardium" EXACT [] +synonym: "ventricular myocardial compact layer" EXACT [MP:0010556] +synonym: "ventricular myocardial compact zone" EXACT [MP:0010556] +xref: EMAPA:37833 {source="MA:th"} +xref: TAO:0005062 +xref: ZFA:0005062 +is_a: UBERON:0004125 ! myocardial compact layer +intersection_of: UBERON:0004125 ! myocardial compact layer +intersection_of: part_of UBERON:0002082 ! cardiac ventricle +relationship: part_of UBERON:0001083 {source="ZFA"} ! myocardium of ventricle + +[Term] +id: UBERON:0004128 +name: optic vesicle +def: "The optic vesicle is the evagination of neurectoderm that precedes formation of the optic cup[GO]. Portion of tissue that is comprised of neuroepitheium which has pinched off from the anterior neural keel and will form the optic cup[ZFA]." [GO:0003404, http://en.wikipedia.org/wiki/Optic_vesicles] +comment: Genes: Six3, Pax6, Rx1 are expressed together in the tip of the neural plate [ISBN:9780878932504 "Developmental Biology"]. Development notes: During subsequent develop- ment, the optic vesicle invaginates and becomes a two-layered structure with an inner neural retina and outer retinal pigment epithelium. As soon as the developing optic vesicle makes contact with the overlying ectoderm, it induces the ectoderm to thicken and form the lens placode [PMID:16496288] +subset: pheno_slim +subset: vertebrate_core +synonym: "evagination" RELATED [] +synonym: "eye vesicle" RELATED [XAO:0000228] +synonym: "ocular vesicle" RELATED [VHOG:0000165] +synonym: "optic vesicles" RELATED PLURAL [ZFA:0000050] +xref: AAO:0011039 +xref: EHDAA2:0001320 +xref: EMAPA:16540 +xref: FMA:293357 +xref: http://linkedlifedata.com/resource/umls/id/C0231106 +xref: http://www.snomedbrowser.com/Codes/Details/362864008 +xref: NCIT:C34236 +xref: Optic:vesicles +xref: TAO:0000050 +xref: UMLS:C0231106 {source="ncithesaurus:Optic_Vesicle"} +xref: VHOG:0000165 +xref: XAO:0000228 +xref: ZFA:0000050 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: developmentally_induced_by UBERON:0004880 ! chordamesoderm +relationship: develops_from UBERON:0002346 {source="GO-def"} ! neurectoderm +relationship: develops_from UBERON:0003071 {source="ZFA"} ! eye primordium +relationship: part_of UBERON:0010312 {source="ZFA"} ! immature eye + +[Term] +id: UBERON:0004129 +name: growth plate cartilage +def: "cartilage that will provide a scaffold for mineralization of endochondral bones as they elongate or grow." [GO:0003417] +synonym: "growth plate" RELATED [] +is_a: UBERON:0002418 ! cartilage tissue +relationship: part_of UBERON:0010363 ! endochondral element +relationship: surrounds UBERON:0004763 ! endochondral bone tissue + +[Term] +id: UBERON:0004130 +name: cerebellar layer +def: "A cortical cell layer of the cerebellum. Examples: the granular (inner+outer) layer, molecular layer, Purkinje cell layer, and the ventricular layer of the embryo." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Cortical_Cell_Layer_of_the_Cerebellum] +subset: pheno_slim +synonym: "cell layer of cerebellar cortex" EXACT [] +synonym: "cytoarchitectural part of the cerebellar cortex" EXACT [BIRNLEX:880] +synonym: "gray matter layer of cerebellum" EXACT [FMA:83141] +synonym: "layer of cerebellar cortex" EXACT [] +synonym: "layer of cerebellum" EXACT [] +xref: BIRNLEX:880 +xref: EMAPA:35212 +xref: FMA:83141 +xref: http://linkedlifedata.com/resource/umls/id/C1707522 +xref: http://www.snomedbrowser.com/Codes/Details/360478008 +xref: MA:0000201 +xref: NCIT:C49137 +xref: UMLS:C1707522 {source="ncithesaurus:Cortical_Cell_Layer_of_the_Cerebellum"} +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0016548 ! central nervous system gray matter layer +intersection_of: UBERON:0016548 ! central nervous system gray matter layer +intersection_of: part_of UBERON:0002037 ! cerebellum +relationship: contributes_to_morphology_of UBERON:0002129 ! cerebellar cortex +relationship: part_of UBERON:0002129 ! cerebellar cortex + +[Term] +id: UBERON:0004132 +name: trigeminal sensory nucleus +def: "The sensory trigeminal nerve nuclei are the largest of the cranial nerve nuclei, and extend through the whole of the midbrain, pons and medulla. The nucleus is divided into three parts, from rostral to caudal (top to bottom in humans): * The mesencephalic nucleus * The chief sensory nucleus (or pontine nucleus or main sensory nucleus or primary nucleus) * The spinal trigeminal nucleus[WP]." [http://en.wikipedia.org/wiki/Trigeminal_nuclei] +subset: vertebrate_core +synonym: "sensory trigeminal nuclei" EXACT PLURAL [TAO:0000433] +synonym: "sensory trigeminal nucleus" EXACT [ZFA:0000433] +synonym: "sensory trigeminal V nucleus" EXACT [] +synonym: "trigeminal sensory nucleus" EXACT [GO:0021730] +synonym: "trigeminal V sensory nucleus" EXACT [MA:0001030] +xref: EMAPA:35884 +xref: http://www.snomedbrowser.com/Codes/Details/280170001 +xref: MA:0001030 +xref: TAO:0000433 +xref: Trigeminal:nuclei +xref: VHOG:0001356 +xref: ZFA:0000433 +is_a: UBERON:0002925 ! trigeminal nucleus + +[Term] +id: UBERON:0004133 +name: salivatory nucleus +def: "." [GO:0021751] +synonym: "salivary nucleus" EXACT [GO:0021751] +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009662 ! hindbrain nucleus +relationship: part_of UBERON:0000988 ! pons + +[Term] +id: UBERON:0004134 +name: proximal tubule +def: "In mammals, the proximal tubule is a nephron tubule that connects Bowman's capsule to the loop of Henle. It has a brush border epithelial morphology[GO]." [GO:0072014] +synonym: "kidney proximal tubule" EXACT [MA:0002611] +synonym: "proximal kidney tubule" EXACT [MESH:A05.810.453.736.560.570] +synonym: "renal proximal tubule" EXACT [] +xref: BTO:0001498 +xref: CALOHA:TS-0509 +xref: EMAPA:28281 +xref: MA:0002611 +xref: MESH:D007687 +is_a: UBERON:0006853 ! renal cortex tubule +relationship: continuous_with UBERON:0001230 {source="GO"} ! glomerular capsule +relationship: continuous_with UBERON:0001289 {source="GO"} ! descending limb of loop of Henle + +[Term] +id: UBERON:0004135 +name: distal tubule +def: "The distal tubule is a nephron tubule that consists of the distal convoluted tubule and distal straight tubule segments" [GO:0072017] +synonym: "kidney distal tubule" EXACT [MA:0002633] +synonym: "renal distal tubule" EXACT [] +xref: BTO:0000482 +xref: CALOHA:TS-0504 +xref: EMAPA:28387 +xref: MA:0002633 +xref: MESH:D007686 +is_a: UBERON:0007685 ! region of nephron tubule + +[Term] +id: UBERON:0004136 +name: intermediate tubule +def: "The intermediate tubule is a nephron tubule that lies between the proximal and distal tubules" [GO:0072018] +synonym: "renal intermediate tubule" EXACT [] +synonym: "tubulus attenuatus" EXACT [FMA:17718] +xref: FMA:17718 +is_a: UBERON:0007685 ! region of nephron tubule +relationship: part_of UBERON:0001288 {source="FMA"} ! loop of Henle + +[Term] +id: UBERON:0004138 +name: somitomeric trunk muscle +def: "The somitomeric trunk muscle is derived from somitomeric mesoderm. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle. An example of this process is found in Mus musculus.[GO]." [GO:0002075] +is_a: UBERON:0001774 ! skeletal muscle of trunk + +[Term] +id: UBERON:0004139 +name: cardiogenic plate +def: "The first recognizable structure derived from the heart field" [GO:0003142] +subset: pheno_slim +synonym: "cardiac crescent" RELATED [EMAPA:16106] +synonym: "cardiogenic crescent" RELATED [GO:0003142] +synonym: "heart rudiment" RELATED [] +synonym: "myocardial plate" EXACT [EHDAA2:0000215] +xref: EHDAA2:0000215 +xref: EMAPA:16106 +xref: VHOG:0000975 +is_a: UBERON:0002050 ! embryonic structure +relationship: develops_from UBERON:0003084 ! heart primordium + +[Term] +id: UBERON:0004140 +name: primary heart field +def: "A specific region of the lateral mesoderm that will form the primary beating heart tube. In mammals the primary heart field gives rise to the left ventricle." [GO:0003138, GOC:mtg_heart, GOC:rl] +synonym: "FHF" RELATED ABBREVIATION [XAO:0004185] +synonym: "first heart field" EXACT [XAO:0004185] +synonym: "heart field" RELATED [XAO:0004185] +synonym: "PHF" RELATED ABBREVIATION [XAO:0004185] +synonym: "primary heart field" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/17276708, XAO:0004185] +xref: XAO:0004185 +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0007688 ! anlage +relationship: part_of UBERON:0003081 {source="GO:0003128"} ! lateral plate mesoderm +relationship: part_of UBERON:0036146 {source="BGEE:ann"} ! cardiopharyngeal field + +[Term] +id: UBERON:0004141 +name: heart tube +def: "An epithelial tube that will give rise to the mature heart." [GO:0003143, GOC:mtg_heart] +subset: efo_slim +subset: pheno_slim +subset: vertebrate_core +synonym: "embryonic heart tube" EXACT [GO:0003143] +synonym: "endocardial heart tube" EXACT [MP:0012700] +synonym: "endocardial tube" EXACT [XAO:0000337] +xref: AAO:0010411 +xref: EFO:0003526 +xref: EMAPA:32685 +xref: NCIT:C34161 +xref: TAO:0000360 +xref: XAO:0000337 +xref: ZFA:0000360 +is_a: UBERON:0003914 ! epithelial tube +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0012275 ! meso-epithelium +relationship: develops_from UBERON:0005498 ! primitive heart tube +relationship: immediate_transformation_of UBERON:0005498 {source="ZFA-modified"} ! primitive heart tube + +[Term] +id: UBERON:0004142 +name: outflow tract septum +def: "The outflow tract septum is a partition in the outflow tract" [GO:0003148] +is_a: UBERON:0002099 ! cardiac septum +intersection_of: UBERON:0002099 ! cardiac septum +intersection_of: part_of UBERON:0004145 ! outflow tract +relationship: part_of UBERON:0004145 ! outflow tract + +[Term] +id: UBERON:0004145 +name: outflow tract +def: "The outflow tract is the portion of the heart through which blood flows into the arteries" [GO:0003151] +subset: pheno_slim +synonym: "arterial (outflow) pole" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/20735616] +synonym: "cardiac outflow tract" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/20735616] +synonym: "heart outflow tract" EXACT [] +xref: EHDAA2:0001351 +xref: EHDAA:464 +xref: EHDAA:798 +xref: EMAPA:16346 +xref: MA:0000100 +xref: VHOG:0000670 +xref: XAO:0004139 +is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: channel_for UBERON:0000178 ! blood +relationship: channels_from UBERON:0000948 ! heart +relationship: channels_into UBERON:0001637 ! artery +relationship: part_of UBERON:0000948 ! heart + +[Term] +id: UBERON:0004146 +name: His-Purkinje system +def: "The His-Purkinje system receives signals from the AV node and is composed of the fibers that regulate cardiac muscle contraction in the ventricles" [GO:0003164, https://github.com/geneontology/go-ontology/issues/12451] +synonym: "His-Purkinji network" EXACT [] +synonym: "HPS" EXACT ABBREVIATION [] +synonym: "VCS" EXACT [] +synonym: "ventricular conduction system" EXACT [] +is_a: UBERON:0010131 {source="cjm"} ! conducting tissue of heart +is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle +relationship: part_of UBERON:0002350 {source="GO"} ! conducting system of heart + +[Term] +id: UBERON:0004148 +name: cardiac vein +def: "Vein of heart that drains the myocardium" [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "cardiac vein" EXACT [FMA:12846] +synonym: "coronary vein" EXACT [ZFA:0005814] +synonym: "coronary vein" RELATED [http://en.wikipedia.org/wiki/Coronary_circulation] +synonym: "heart vein" EXACT [OBOL:automatic] +synonym: "vein of heart" EXACT [OBOL:automatic] +xref: Coronary:circulation +xref: EHDAA2:0004507 +xref: EMAPA:37137 {source="MA:th"} +xref: FMA:12846 +xref: galen:CoronaryVein +xref: http://linkedlifedata.com/resource/umls/id/C0226654 +xref: http://linkedlifedata.com/resource/umls/id/C0226737 +xref: http://www.snomedbrowser.com/Codes/Details/277726009 +xref: NCIT:C12878 +xref: NCIT:C12882 +xref: UMLS:C0226654 {source="ncithesaurus:Cardiac_Vein"} +xref: UMLS:C0226737 {source="ncithesaurus:Coronary_Vein"} +xref: ZFA:0005814 +is_a: UBERON:0003498 ! heart blood vessel +is_a: UBERON:0005194 ! thoracic vein +is_a: UBERON:0013140 {source="FMA"} ! systemic vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0002349 ! myocardium +intersection_of: part_of UBERON:0000948 ! heart +relationship: drains UBERON:0002349 ! myocardium + +[Term] +id: UBERON:0004149 +name: ventriculo bulbo valve +def: "A heart valve located between the ventricle and bulbus arteriosus." [GO:0003173] +synonym: "bulboventricular valve" EXACT [ZFA:0001375] +xref: TAO:0001375 +xref: ZFA:0001375 +is_a: UBERON:0000946 ! cardial valve + +[Term] +id: UBERON:0004150 +name: coronary sinus valve +def: "Vestigial cardiac valve which is continuous with the valve of the inferior vena cava[FMA]." [GO:0003178] +subset: pheno_slim +synonym: "thebesian valve" EXACT [] +synonym: "thebesius valve" EXACT [] +synonym: "valve of coronary sinus" EXACT [] +xref: FMA:9242 +xref: http://en.wikipedia.org/wiki/Valve_of_coronary_sinus +xref: http://www.snomedbrowser.com/Codes/Details/277723001 +is_a: UBERON:0000946 ! cardial valve + +[Term] +id: UBERON:0004151 +name: cardiac chamber +def: "A cardiac chamber surrounds an enclosed cavity within the heart" [GO:0003205] +comment: generic enough to cover FBbt:00003156 heart chamber but this is a cavity. GO defines it as the cavity. TODO - move subclasses. Note this also includes sinus venosus +synonym: "chamber of heart" EXACT [] +synonym: "heart chamber" EXACT [] +xref: FMA:7095 +xref: http://www.snomedbrowser.com/Codes/Details/276456008 +xref: OpenCyc:Mx4rmexpjPdAEduAAAAOpmP6tw +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0000948 ! heart + +[Term] +id: UBERON:0004152 +name: bulbus arteriosus +def: "The bulbus arteriosus is an elastic heart chamber[GO]. Multi-tissue structure that consists of three layers and through which the blood exits the heart. The bulbus arteriosus is a pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches[ZFA]." [GO:0003232, http://www.ncbi.nlm.nih.gov/pubmed/15108157] +subset: efo_slim +synonym: "truncus" EXACT [ZFA:0000173] +xref: EFO:0003505 +xref: TAO:0000173 +xref: ZFA:0000173 +is_a: UBERON:0004151 ! cardiac chamber +relationship: develops_from UBERON:0007287 {evidence="definitional"} ! presumptive bulbus arteriosus + +[Term] +id: UBERON:0004153 +name: ventricular septum intermedium +def: "Endocardial cushions project into the atrial canal, and, meeting in the middle line, unite to form the septum intermedium which divides the canal into two channels, the future right and left atrioventricular orifices[Gray's via WP]." [GO:0003282, http://en.wikipedia.org/wiki/Septum_intermedium] +synonym: "septum intermedium" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/361468003 +xref: Septum:intermedium +is_a: UBERON:0002094 ! interventricular septum +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: develops_from UBERON:0002062 {source="Wikipedia"} ! endocardial cushion + +[Term] +id: UBERON:0004154 +name: atrial septum primum +alt_id: UBERON:0004157 +def: "In the developing heart, the cavity of the primitive atrium becomes subdivided into right and left chambers by a septum, the septum primum, which grows downward into the cavity. The increasingly smaller gap below it (before it fuses with the endocardial cushion) is known as the ostium primum. The septum primum eventually fuses with the endocardial cushion, closing the ostium primum off completely. Meanwhile, perforations appear in the superior part of the septum primum, forming the ostium secundum. This will eventually form part of the fossa ovalis." [GO:0003284] +synonym: "atrial septum primum" EXACT [GO:0003289] +synonym: "interatrial septum primum" EXACT [EHDAA2:0001825] +synonym: "septum primum" EXACT [FMA:63909] +xref: EHDAA2:0001825 +xref: EHDAA:1900 +xref: EMAPA:17013 +xref: FMA:63909 +xref: http://linkedlifedata.com/resource/umls/id/C0225837 +xref: http://www.snomedbrowser.com/Codes/Details/362017007 +xref: NCIT:C34294 +xref: Septum:primum +xref: UMLS:C0225837 {source="ncithesaurus:Septum_Primum"} +xref: VHOG:0000020 +is_a: UBERON:0002085 ! interatrial septum + +[Term] +id: UBERON:0004155 +name: atrial septum secundum +alt_id: UBERON:0004158 +def: "." [GO:0003285, http://en.wikipedia.org/wiki/Septum_secondum] +comment: The septum secundum, semilunar in shape, grows downward from the upper wall of the atrium immediately to the right of the primary septum and ostium secundum. Shortly after birth it fuses with the septum primum, and consequently the foramen ovale is closed, but sometimes the fusion is incomplete and the upper part of the foramen remains patent. The limbus fossae ovalis denotes the free margin of the septum secundum. +synonym: "interatrial septum secundum" EXACT [EHDAA2:0001827] +synonym: "septum secundum" EXACT [FMA:63910] +xref: EHDAA2:0001827 +xref: EHDAA:3406 +xref: EMAPA:17864 +xref: FMA:63910 +xref: http://linkedlifedata.com/resource/umls/id/C0225838 +xref: http://www.snomedbrowser.com/Codes/Details/308850005 +xref: NCIT:C34295 +xref: Septum:secondum +xref: UMLS:C0225838 {source="ncithesaurus:Septum_Secundum"} +xref: VHOG:0000021 +is_a: UBERON:0002085 ! interatrial septum + +[Term] +id: UBERON:0004159 +name: atrial septum intermedium +def: "." [GO:0003291] +is_a: UBERON:0002085 ! interatrial septum + +[Term] +id: UBERON:0004160 +name: proepicardium +def: "An embryonic group of progenitor cells that forms from an outpouching of the septum transversum near the venous pole of the heart and gives rise to the epicardium" [GO:0003342, http://en.wiktionary.org/wiki/proepicardium] +synonym: "proepicardial cluster" EXACT [ZFA:0005808] +synonym: "proepicardial organ" EXACT [ZFIN:ZDB-PUB-080218-16] +xref: EMAPA:36025 +xref: ZFA:0005808 +is_a: UBERON:0003104 ! mesenchyme +relationship: part_of UBERON:0004161 {notes="todo check other taxa"} ! septum transversum +relationship: part_of UBERON:0004535 {source="ZFA"} ! cardiovascular system + +[Term] +id: UBERON:0004161 +name: septum transversum +def: "A thick plate of mesodermal tissue that occupies the space between the thoracic cavity and yolk stalk in the early embryo, forming a transverse partition partially separating the coelomic cavity into thoracic and abdominal portions. It gives rise to the central tendon of the diaphragm[VHOG]." [http://en.wikipedia.org/wiki/Septum_transversum, VHOG:0000019] +subset: pheno_slim +synonym: "transverse septum" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: EHDAA2:0001829 +xref: EHDAA:736 +xref: EMAPA:16318 +xref: FMA:295593 +xref: http://linkedlifedata.com/resource/umls/id/C0231004 +xref: http://www.snomedbrowser.com/Codes/Details/308819008 +xref: NCIT:C34296 +xref: Septum:transversum +xref: UMLS:C0231004 {source="ncithesaurus:Septum_Transversum"} +xref: VHOG:0000019 +is_a: UBERON:0003104 ! mesenchyme +relationship: located_in UBERON:0002323 ! coelemic cavity lumen +relationship: part_of UBERON:0002100 ! trunk + +[Term] +id: UBERON:0004162 +name: pulmonary myocardium +def: "The pulmonary myocardium is the myocardial tissue present in the pulmonary vein" [GO:0003350] +is_a: UBERON:0002036 ! striated muscle tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002016 ! pulmonary vein +relationship: part_of UBERON:0002349 ! myocardium + +[Term] +id: UBERON:0004163 +name: anterior ectodermal midgut +def: "portions of the midgut that are derived from ectoderm." [GO:0007441] +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001555 ! digestive tract + +[Term] +id: UBERON:0004164 +name: branchiomeric muscle +def: "A jaw muscle that arises from cranial mesenchyme and is innervated by cranial nerves." [ISBN:0073040584] +synonym: "branchial head muscle" EXACT [XAO:0004325] +synonym: "branchiomeric skeletal muscle" EXACT [GO:0014707] +xref: Branchiomeric:musculature +xref: XAO:0004325 +is_a: UBERON:0001630 ! muscle organ +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: composed_primarily_of UBERON:0001134 ! skeletal muscle tissue +relationship: develops_from UBERON:0010360 {source="http://www.ncbi.nlm.nih.gov/pubmed/21610022"} ! pharyngeal arch mesenchyme from head mesenchyme +relationship: innervated_by UBERON:0001785 {source="ISBN:0073040584"} ! cranial nerve + +[Term] +id: UBERON:0004166 +name: superior reticular formation +def: "." [GO:0021729, GO_REF:0000021] +is_a: UBERON:0007245 {source="https://orcid.org/0000-0002-6601-2165"} ! nuclear complex of neuraxis +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: part_of UBERON:0002559 {source="GO"} ! medullary reticular formation + +[Term] +id: UBERON:0004167 +name: orbitofrontal cortex +def: "The region of the cerebral cortex covering the basal surface of the frontal lobes; this region normally controls emotion and decision making" [GO:0021769, MGI:csmith, MP:0004170] +subset: efo_slim +subset: pheno_slim +synonym: "fronto-orbital cortex" EXACT [] +synonym: "orbital frontal cortex" EXACT [BIRNLEX:1049, DHB:OFC] +synonym: "orbito-frontal cortex" EXACT [] +synonym: "segment of cortex of frontal lobe" RELATED [FMA:242003] +xref: BIRNLEX:1049 +xref: DHBA:10194 +xref: EFO:0001990 +xref: FMA:242003 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=91 +xref: http://linkedlifedata.com/resource/umls/id/C0152301 +xref: Orbitofrontal:cortex +xref: UMLS:C0152301 {source="BIRNLEX:1049"} +is_a: UBERON:0015593 ! frontal gyrus +relationship: contributes_to_morphology_of UBERON:0000956 ! cerebral cortex +relationship: contributes_to_morphology_of UBERON:0001870 ! frontal cortex +relationship: part_of UBERON:0000349 {source="FMA", source="MP"} ! limbic system + +[Term] +id: UBERON:0004170 +name: spinal cord ventral commissure +def: "The band of nerve fibers which cross the midline of the spinal cord ventral to the central canal and posterior grey commissure[MP]. The anterior (or ventral) white commissure, also known as the alba anterior medullae spinalis, is a bundle of nerve fibers which cross the midline of the spinal cord just anterior to the gray commissure. A N4 fibers and C fibers carrying pain sensation in the spinothalamic tract contribute to this commissure, as do fibers of the anterior corticospinal tract, which carry motor signals from the primary motor cortex[WP]." [GO:0021965, http://en.wikipedia.org/wiki/Anterior_white_commissure, MP:0009695] +subset: pheno_slim +synonym: "alba anterior medullae spinalis" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_white_commissure] +synonym: "anterior commissure" RELATED INCONSISTENT [MP:0009695] +synonym: "anterior white commissure" EXACT [MP:0009695] +synonym: "anterior white commissure of spinal cord" EXACT [FMA:77035] +synonym: "commissura alba anterior medullae spinalis" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_white_commissure] +synonym: "spinal cord anterior commissure" EXACT [MP:0009695] +synonym: "ventral commissure of the spinal cord" RELATED [BAMS:vc] +synonym: "ventral spinal commissure" EXACT [MP:0009695] +synonym: "ventral white column" EXACT [MP:0009695] +synonym: "ventral white commissure of spinal cord" EXACT [FMA:77035] +synonym: "white commissure" RELATED [MP:0009695] +xref: BAMS:vc +xref: EMAPA:37956 {source="MA:th"} +xref: FMA:77035 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1641 +xref: http://en.wikipedia.org/wiki/Anterior_white_commissure +xref: http://linkedlifedata.com/resource/umls/id/C1520137 +xref: http://www.snomedbrowser.com/Codes/Details/424149007 +xref: MBA:858 +xref: NCIT:C33890 +xref: UMLS:C1520137 {source="ncithesaurus:White_Commissure"} +is_a: UBERON:0007838 {source="FMA"} ! spinal cord white commissure +disjoint_from: UBERON:0007840 {source="lexical"} ! spinal cord dorsal white commissure + +[Term] +id: UBERON:0004171 +name: trigeminothalamic tract +def: "The trigeminothalamic tract is one of the major routes of nociceptive and temperature signaling from the face" [GO:0021974] +synonym: "tractus trigeminothalamicus" EXACT LATIN [FMA:83852, FMA:TA] +synonym: "trigeminal tract" RELATED [BIRNLEX:4097] +xref: BAMS:tth +xref: BIRNLEX:4097 +xref: DHBA:12797 +xref: FMA:83852 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1572 +xref: http://en.wikipedia.org/wiki/Anterior_trigeminothalamic_tract +is_a: UBERON:0001018 ! axon tract + +[Term] +id: UBERON:0004172 +name: pons reticulospinal tract +def: "Axon tract that carries efferent (outgoing) action potentials from the cell body in the pons towards target cells in the spinal cord." [GO:0021975] +xref: http://www.snomedbrowser.com/Codes/Details/362404001 +is_a: UBERON:0001018 ! axon tract + +[Term] +id: UBERON:0004173 +name: medulla reticulospinal tract +def: "Axon tract that carries efferent (outgoing) action potentials from the cell body in the medulla towards target cells in the spinal cord[GO]." [GO:0021976] +synonym: "medullary reticulospinal tract" EXACT [FMA:73989] +xref: FMA:73989 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2838 +is_a: UBERON:0001018 ! axon tract + +[Term] +id: UBERON:0004174 +name: obsolete leg joint +def: "Joint in the leg. For example the knee, which separates the leg tibia and femur" [GO:0035111] +comment: Originally created for consistenct with GO, obsoleted when the GO class was obsoleted as the meaning was unclear +synonym: "joint of leg" EXACT [OBOL:automatic] +synonym: "joint of lower limb" RELATED [OBOL:automatic] +is_obsolete: true +consider: UBERON:0003657 + +[Term] +id: UBERON:0004175 +name: internal genitalia +def: "The internal genitalia are the internal sex organs such as the uterine tube, the uterus and the vagina in female mammals, and the testis, seminal vesicle, ejaculatory duct and prostate in male mammals" [GO:0035260] +comment: TODO: make a subdivision of reproductive system. Relabel. See https://github.com/obophenotype/uberon/issues/547 +subset: organ_slim +subset: pheno_slim +synonym: "internal genitalia" EXACT [] +synonym: "internal genitals" EXACT [] +synonym: "internal reproductive organ" RELATED [] +synonym: "internal sex organ" RELATED [] +xref: FMA:45652 +is_a: UBERON:0003133 ! reproductive organ + +[Term] +id: UBERON:0004176 +name: external genitalia +def: "The external genitalia are the outer sex organs, such as the penis or vulva in mammals" [GO:0035261] +comment: TODO: make a subdivision of reproductive system. Relabel. See https://github.com/obophenotype/uberon/issues/547 +subset: organ_slim +subset: pheno_slim +synonym: "external genitalia" EXACT [] +synonym: "external reproductive organ" RELATED [] +synonym: "external sex organ" RELATED [] +xref: FMA:45643 +xref: http://www.snomedbrowser.com/Codes/Details/362207005 +is_a: UBERON:0003133 ! reproductive organ + +[Term] +id: UBERON:0004177 +name: hemopoietic organ +def: "Organ that is part of the hematopoietic system." [GOC:Obol] +subset: organ_slim +subset: pheno_slim +synonym: "haematological system organ" EXACT [OBOL:automatic] +synonym: "haemopoietic system organ" EXACT [OBOL:automatic] +synonym: "hematopoeitic or lymphoid organ" NARROW [] +synonym: "hematopoeitic organ" EXACT [] +synonym: "hematopoietic system organ" EXACT [OBOL:automatic] +synonym: "lymph organ" NARROW [MA:0000747] +synonym: "lymphoid organ" NARROW [BTO:0004605, FMA:7143] +synonym: "organ of haematological system" EXACT [OBOL:automatic] +synonym: "organ of haemopoietic system" EXACT [OBOL:automatic] +synonym: "organ of hematopoietic system" EXACT [OBOL:automatic] +synonym: "organ of organa haemopoietica" EXACT [OBOL:automatic] +synonym: "organa haemopoietica organ" EXACT [OBOL:automatic] +xref: BTO:0004605 +xref: EMAPA:37665 {source="MA:th"} +xref: FMA:7143 +xref: http://www.snomedbrowser.com/Codes/Details/361338006 +xref: MA:0000747 +is_a: UBERON:0000062 ! organ +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0000062 ! organ +intersection_of: part_of UBERON:0002390 ! hematopoietic system +relationship: part_of UBERON:0002390 ! hematopoietic system + +[Term] +id: UBERON:0004178 +name: aorta smooth muscle tissue +def: "the nonstriated, involuntary muscle tissue located in the wall of the aorta" [MGI:csmith, MP:0009865] +subset: efo_slim +subset: pheno_slim +synonym: "aorta non-striated muscle" EXACT [OBOL:automatic] +synonym: "aorta smooth muscle" EXACT [OBOL:automatic] +synonym: "aortic smooth muscle" EXACT [BTO:0001685] +xref: BTO:0001685 +xref: CALOHA:TS-0048 +xref: EFO:0002775 +xref: EMAPA:35135 +xref: http://linkedlifedata.com/resource/umls/id/C1706825 +xref: MA:0000702 +xref: NCIT:C49191 +xref: UMLS:C1706825 {source="ncithesaurus:Aorta_Smooth_Muscle_Tissue"} +is_a: UBERON:0004237 ! blood vessel smooth muscle +is_a: UBERON:0004695 ! arterial system smooth muscle +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0000947 ! aorta +relationship: part_of UBERON:0000947 ! aorta + +[Term] +id: UBERON:0004179 +name: prostate glandular acinus +def: "A saclike structure of the prostate gland, comprised of at least three cell layers: an innermost layer of secretory columnar luminal epithelium, a middle layer of squamous basal epithelium that also contains neuroendocrine cells, transit amplifying cells, and stem cells, and an outer layer of smooth muscle intermixed with other stromal cells" [GO:0060525, http://www.ncbi.nlm.nih.gov/pubmed/18977204] +synonym: "prostatic acinus" EXACT [FMA:66808] +synonym: "prostatic follicle" EXACT [FMA:66808] +xref: FMA:66808 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0009842 {source="FMA"} ! glandular acinus +relationship: develops_from UBERON:0009843 {source="http://www.ncbi.nlm.nih.gov/pubmed/18977204"} ! prostate epithelial cord +relationship: part_of UBERON:0000428 {source="GO"} ! prostate epithelium + +[Term] +id: UBERON:0004180 +name: mammary gland fat +def: "The mammary fat is an adipose structure in the gland that is invaded by the mammary ducts" [GO:0060611] +synonym: "adipose tissue of lactiferous gland" EXACT [OBOL:automatic] +synonym: "adipose tissue of mammary gland" EXACT [OBOL:automatic] +synonym: "fat tissue of lactiferous gland" EXACT [OBOL:automatic] +synonym: "fat tissue of lobe of breast" EXACT [OBOL:automatic] +synonym: "fat tissue of lobe of mammary gland" EXACT [OBOL:automatic] +synonym: "fat tissue of mammary gland" EXACT [OBOL:automatic] +synonym: "fatty tissue of lactiferous gland" EXACT [OBOL:automatic] +synonym: "fatty tissue of lobe of breast" EXACT [OBOL:automatic] +synonym: "fatty tissue of lobe of mammary gland" EXACT [OBOL:automatic] +synonym: "fatty tissue of mammary gland" EXACT [OBOL:automatic] +synonym: "lactiferous gland adipose tissue" EXACT [OBOL:automatic] +synonym: "lactiferous gland fat tissue" EXACT [OBOL:automatic] +synonym: "lactiferous gland fatty tissue" EXACT [OBOL:automatic] +synonym: "lobe of breast adipose tissue" EXACT [OBOL:automatic] +synonym: "lobe of breast fat tissue" EXACT [OBOL:automatic] +synonym: "lobe of breast fatty tissue" EXACT [OBOL:automatic] +synonym: "lobe of mammary gland adipose tissue" EXACT [OBOL:automatic] +synonym: "lobe of mammary gland fat tissue" EXACT [OBOL:automatic] +synonym: "lobe of mammary gland fatty tissue" EXACT [OBOL:automatic] +synonym: "mammary gland adipose tissue" EXACT [OBOL:automatic] +synonym: "mammary gland fat tissue" EXACT [OBOL:automatic] +synonym: "mammary gland fatty tissue" EXACT [OBOL:automatic] +xref: EMAPA:35539 +xref: MA:0002911 +is_a: UBERON:0001013 ! adipose tissue +is_a: UBERON:0003584 ! mammary gland connective tissue +intersection_of: UBERON:0001013 ! adipose tissue +intersection_of: part_of UBERON:0001911 ! mammary gland + +[Term] +id: UBERON:0004182 +name: mammary gland cord +def: "The solid cord of epithelial cells that emerges from the mammary bud and grows down from the primary mammary mesenchyme and into a second stromal compartment, the fat pad precursor, beneath the dermis." [MP:0013725] +synonym: "lactiferous gland cord" EXACT [] +synonym: "mammary cord" EXACT [] +synonym: "mammary sprout" RELATED [] +is_a: UBERON:0003244 ! epithelium of mammary gland +is_a: UBERON:0005154 ! epithelial cord +is_a: UBERON:0034969 ! epithelial layer of duct +intersection_of: UBERON:0005154 ! epithelial cord +intersection_of: part_of UBERON:0001765 ! mammary duct +relationship: develops_from UBERON:0005333 ! mammary bud +relationship: part_of UBERON:0001765 ! mammary duct + +[Term] +id: UBERON:0004183 +name: placental labyrinth blood vessel +def: "The embryonic vessels grow through the layer to come in close contact with the maternal blood supply" [GO:0060716] +synonym: "blood vessel of labyrinthine layer" EXACT [OBOL:automatic] +synonym: "blood vessel of labyrinthine layer of placenta" EXACT [OBOL:automatic] +synonym: "blood vessel of placenta labyrinth" EXACT [OBOL:automatic] +synonym: "labyrinthine layer blood vessel" EXACT [GO:0060716] +synonym: "labyrinthine layer of placenta blood vessel" EXACT [OBOL:automatic] +synonym: "placenta labyrinth blood vessel" EXACT [OBOL:automatic] +is_a: UBERON:0022358 ! placenta blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0003946 ! placenta labyrinth +relationship: part_of UBERON:0003970 ! placental labyrinth vasculature + +[Term] +id: UBERON:0004184 +name: prostate gland stroma +alt_id: UBERON:0005084 +def: "The prostate gland stroma is made up of the mesenchymal or fibroblast cells of the prostate gland" [GO:0060741] +synonym: "prostate stroma" EXACT [OBOL:automatic] +synonym: "prostatic stroma" EXACT [FMA:45719] +synonym: "stroma of glandular part of prostate" NARROW [FMA:74349, OBOL:automatic] +synonym: "stroma of prostate" EXACT [OBOL:automatic] +synonym: "stroma of prostate gland" EXACT [OBOL:automatic] +xref: EMAPA:35714 +xref: FMA:45719 +xref: http://linkedlifedata.com/resource/umls/id/C1521760 +xref: MA:0002912 +xref: NCIT:C13104 +xref: UMLS:C1521760 {source="ncithesaurus:Prostatic_Stroma"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0003891 ! stroma +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0003891 ! stroma +intersection_of: part_of UBERON:0002367 ! prostate gland +relationship: part_of UBERON:0002367 ! prostate gland + +[Term] +id: UBERON:0004185 +name: endodermal part of digestive tract +def: "A portions of the gut that is derived from endoderm." [GO:0061031] +synonym: "endodermal gut" EXACT [] +synonym: "gut endoderm" EXACT [EMAPA:32930] +xref: EMAPA:32930 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004921 ! subdivision of digestive tract +intersection_of: UBERON:0004921 ! subdivision of digestive tract +intersection_of: develops_from UBERON:0000925 ! endoderm +intersection_of: part_of UBERON:0001555 ! digestive tract + +[Term] +id: UBERON:0004186 +name: olfactory bulb mitral cell layer +def: "The mitral cell layer is composed of pyramidal neurons whose cell bodies are located between the granule cell layer and the plexiform layer" [GO:0061034] +subset: pheno_slim +synonym: "mitral cell body layer" EXACT [NLXANAT:100201] +synonym: "mitral cell layer" EXACT [BTO:0001108] +synonym: "mitral cell layer of the olfactory bulb" RELATED [BAMS:Mi] +synonym: "OB mitral cell layer" EXACT [DMBA:OB] +synonym: "olfactory bulb main mitral cell body layer" RELATED [NLXANAT:100201] +xref: BAMS:Mi +xref: BTO:0001108 +xref: DHBA:11329 +xref: DMBA:15912 +xref: EMAPA:35611 +xref: MA:0000973 +xref: NLXANAT:100201 +is_a: UBERON:0004001 ! olfactory bulb layer + +[Term] +id: UBERON:0004187 +name: Harderian gland +def: "The Harderian gland is an anterior orbital gland usually associated with the nictitating membrane, and produces and secretes a variety of substances to the eye, depending upon the species[GO]." [GO:0070384, http://en.wikipedia.org/wiki/Harderian_gland] +subset: organ_slim +subset: pheno_slim +synonym: "deep gland of the nictitating membrane" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/7559104] +synonym: "gland of Hardarian" EXACT [] +synonym: "glandula palpebra tertia profundus" EXACT LATIN [http://www.ncbi.nlm.nih.gov/pubmed/7559104] +synonym: "Hardarian gland" EXACT [] +synonym: "Harder's gland" EXACT [] +xref: BTO:0000557 +xref: EMAPA:19153 +xref: GAID:1219 +xref: Harderian:gland +xref: http://linkedlifedata.com/resource/umls/id/C0018597 +xref: http://www.snomedbrowser.com/Codes/Details/41474005 +xref: MA:0001247 +xref: MESH:D006243 +xref: NCIT:C77619 +xref: UMLS:C0018597 {source="ncithesaurus:Harderian_Gland"} +is_a: UBERON:0002365 ! exocrine gland +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004859 ! eye gland +is_a: UBERON:0015153 ! medial gland of ocular region +intersection_of: UBERON:0015153 ! medial gland of ocular region +intersection_of: produces UBERON:0022282 ! secretion of Harderian gland +relationship: innervated_by UBERON:0015161 ! inferior branch of oculomotor nerve +relationship: part_of UBERON:0000019 ! camera-type eye +relationship: present_in_taxon NCBITaxon:10047 {source="ISBN:1118473523"} +relationship: present_in_taxon NCBITaxon:8293 {source="https://sourceforge.net/p/geneontology/ontology-requests/10639"} +relationship: present_in_taxon NCBITaxon:8342 {source="https://sourceforge.net/p/geneontology/ontology-requests/10639"} +relationship: present_in_taxon NCBITaxon:9263 {source="https://sourceforge.net/p/geneontology/ontology-requests/10639"} +relationship: present_in_taxon NCBITaxon:9397 {source="http://www.ncbi.nlm.nih.gov/pubmed/20665821", source="https://sourceforge.net/p/geneontology/ontology-requests/10639"} +relationship: present_in_taxon NCBITaxon:9608 {source="http://www.ncbi.nlm.nih.gov/pubmed/14803383", source="https://sourceforge.net/p/geneontology/ontology-requests/10639"} +relationship: present_in_taxon NCBITaxon:9681 {source="https://sourceforge.net/p/geneontology/ontology-requests/10639", source="PMID:6997222 "} +relationship: present_in_taxon NCBITaxon:9845 {source="http://www.ncbi.nlm.nih.gov/pubmed/12969024", source="https://sourceforge.net/p/geneontology/ontology-requests/10639"} +relationship: produces UBERON:0022282 ! secretion of Harderian gland + +[Term] +id: UBERON:0004188 +name: glomerular epithelium +def: "The glomerular epithelium is an epithelial tissue that covers the outer surfaces of the glomerulus. The glomerular epithelium consists of both parietal and visceral epithelium. Metanephric glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport. A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros." [GO:0072010] +synonym: "epithelium of glomerulus" EXACT [] +synonym: "epithelium of kidney glomerulus" EXACT [] +synonym: "epithelium of renal glomerulus" EXACT [] +synonym: "glomerular epithelial cell" RELATED [BTO:0001515] +synonym: "kidney glomerular epithelium" EXACT [MA:0002847] +xref: BTO:0001515 +xref: EMAPA:35458 +xref: MA:0002847 +is_a: UBERON:0004211 ! nephron epithelium +is_a: UBERON:0012275 ! meso-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000074 ! renal glomerulus +relationship: part_of UBERON:0000074 ! renal glomerulus + +[Term] +id: UBERON:0004189 +name: glomerular endothelium +def: "The glomerular endothelium is an epithelial tissue that covers the internal surfaces of the glomerulus" [GO:0072011] +synonym: "endothelium of renal glomerulus" EXACT [OBOL:automatic] +synonym: "renal glomerulus endothelium" EXACT [OBOL:automatic] +xref: BTO:0004631 +is_a: UBERON:0004188 ! glomerular epithelium +is_a: UBERON:0004852 ! cardiovascular system endothelium +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0000074 ! renal glomerulus +relationship: part_of UBERON:0004190 ! renal glomerulus vasculature + +[Term] +id: UBERON:0004190 +name: renal glomerulus vasculature +def: "The glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the glomerulus" [GO:0072012] +synonym: "glomerulus vasculature" EXACT [OBOL:automatic] +synonym: "renal glomerulus vascular network" EXACT [OBOL:automatic] +synonym: "renal glomerulus vasculature" EXACT [OBOL:automatic] +synonym: "vascular network of renal glomerulus" EXACT [OBOL:automatic] +synonym: "vasculature of renal glomerulus" EXACT [OBOL:automatic] +is_a: UBERON:0006544 ! kidney vasculature +intersection_of: UBERON:0002049 ! vasculature +intersection_of: part_of UBERON:0000074 ! renal glomerulus +relationship: part_of UBERON:0000074 ! renal glomerulus + +[Term] +id: UBERON:0004193 +name: loop of Henle ascending limb thin segment +def: "A sub-portion of the loop of Henle in the nephron of the kidney that is permeable to ions but not to water" [GO:0072021, http://en.wikipedia.org/wiki/Thin_ascending_limb_of_loop_of_Henle] +subset: pheno_slim +synonym: "ascending limb thin segment of loop of Henle" EXACT [] +synonym: "ascending thin limb" EXACT [FMA:17720] +synonym: "pars ascendens (tubulus attenuatus)" EXACT [FMA:17720] +synonym: "thin ascending limb" EXACT [EMAPA:28328] +synonym: "thin ascending limb of loop of Henle" EXACT [] +xref: EMAPA:28328 +xref: EMAPA:28361 +xref: FMA:17720 +xref: http://en.wikipedia.org/wiki/Thin_ascending_limb_of_loop_of_Henle +xref: MA:0001678 +is_a: UBERON:0007685 ! region of nephron tubule +relationship: contributes_to_morphology_of UBERON:0005164 ! ascending limb of loop of Henle +relationship: part_of UBERON:0003455 ! inner renal medulla loop of Henle +relationship: part_of UBERON:0005164 ! ascending limb of loop of Henle + +[Term] +id: UBERON:0004194 +name: long nephron +def: "Long nephrons are associated with juxtamedullary glomeruli and extend to the inner medulla" [GO:0072029] +synonym: "juxtamedullary nephron" RELATED [GO:0072029, http://sourceforge.net/tracker/?func=detail&aid=3031362&group_id=36855&atid=440764] +xref: FMA:272054 +xref: http://linkedlifedata.com/resource/umls/id/C1517630 +xref: NCIT:C32892 +xref: UMLS:C1517630 {source="ncithesaurus:Juxtamedullary_Nephron"} +is_a: UBERON:0001285 ! nephron + +[Term] +id: UBERON:0004195 +name: short nephron +def: "Short nephrons are associated with mid-cortical glomeruli, and have no short ascending limb, so the limb is situated in the outer medulla" [GO:0072030] +xref: FMA:272051 +is_a: UBERON:0001285 ! nephron + +[Term] +id: UBERON:0004196 +name: proximal convoluted tubule segment 1 +alt_id: UBERON:0006432 +def: "The S1 portion is the initial portion of the proximal convoluted tubule and is responsible for avid reabsorption of water and solutes[GO]." [GO:0072031, http://sourceforge.net/tracker/?func=detail&atid=440764&aid=3298740&group_id=36855] +synonym: "proximal tubule segment 1" EXACT [MA:0002612] +synonym: "S1" BROAD [GO:0072031] +synonym: "S1 portion of renal tubule" EXACT [] +synonym: "S1 portion of tubule" EXACT [] +synonym: "segment 1 of proximal tubule" EXACT [EMAPA:29657] +xref: EMAPA:29657 +xref: MA:0002612 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0006555 ! excretory tube +relationship: part_of UBERON:0001287 {source="GO"} ! proximal convoluted tubule + +[Term] +id: UBERON:0004197 +name: proximal convoluted tubule segment 2 +alt_id: UBERON:0006433 +def: "The S2 portion of the tubule is involved in reabsorption of water and sodium chloride[GO]." [GO:0072032] +synonym: "proximal tubule segment 2" EXACT [MA:0002613] +synonym: "S2" BROAD [GO:0072032] +synonym: "S2 portion of renal tubule" EXACT [] +synonym: "S2 portion of tubule" EXACT [] +synonym: "segment 2 of proximal tubule" EXACT [EMAPA:29659] +xref: EMAPA:29659 +xref: MA:0002613 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0006555 ! excretory tube +relationship: part_of UBERON:0001287 {source="GO"} ! proximal convoluted tubule + +[Term] +id: UBERON:0004198 +name: comma-shaped body +def: "The comma-shaped body is the precursor structure to the S-shaped body that contributes to the morphogenesis of the nephron" [GO:0072049] +subset: pheno_slim +synonym: "CSB" EXACT ABBREVIATION [] +xref: EMAPA:27681 +xref: ZFA:0005588 +is_a: UBERON:0005423 ! developing anatomical structure +relationship: develops_from UBERON:0004209 {source="ZFA"} ! renal vesicle +relationship: part_of UBERON:0010532 {source="cjm"} ! primitive nephron + +[Term] +id: UBERON:0004199 +name: S-shaped body +def: "The S-shaped body is the successor of the comma-shaped body that contributes to the morphogenesis of the nephron" [GO:0072050] +subset: pheno_slim +synonym: "SSB" EXACT ABBREVIATION [] +synonym: "stage II nephron" EXACT [http://www.gudmap.org/Organ_Summaries/Metanephros/Renal_vesicle.html] +xref: EMAPA:27756 +xref: ZFA:0005589 +is_a: UBERON:0005423 ! developing anatomical structure +relationship: develops_from UBERON:0004198 {source="GO"} ! comma-shaped body +relationship: part_of UBERON:0010532 {source="cjm"} ! primitive nephron + +[Term] +id: UBERON:0004200 +name: kidney pyramid +alt_id: UBERON:0002449 +alt_id: UBERON:0005098 +def: "Kidney pyramids are the conical arrangements of tubules that constitute the renal medulla in a multi-lobed mammalian kidney; they contain the loops of Henle and the medullary collecting ducts." [GO:0072056, http://anatomy.uams.edu/anatomyhtml/kidney.html] +subset: pheno_slim +synonym: "Malphigian pyramid" RELATED MISSPELLING [BTO:0003926] +synonym: "Malpighian pyramid" EXACT [http://en.wikipedia.org/wiki/Renal_pyramids] +synonym: "Malpighian pyramid" RELATED [] +synonym: "medullary pyramid" RELATED [] +synonym: "pyramid" BROAD [GO:0072056] +synonym: "pyramid of Malphigi" RELATED MISSPELLING [ncithesaurus:Pyramid_of_Malpighi] +synonym: "pyramid of Malpighi" RELATED [UBERON:cjm] +synonym: "pyramides renales" RELATED LATIN [http://en.wikipedia.org/wiki/Renal_pyramids] +synonym: "pyramis renalis" RELATED [BTO:0003926] +synonym: "renal medullary region" RELATED [FMA:258870] +synonym: "renal pyramid" EXACT [http://en.wikipedia.org/wiki/Renal_pyramids] +xref: BTO:0003926 +xref: FMA:258870 +xref: http://linkedlifedata.com/resource/umls/id/C0227629 +xref: http://linkedlifedata.com/resource/umls/id/C1514613 +xref: http://www.snomedbrowser.com/Codes/Details/361328001 +xref: MA:0001654 +xref: NCIT:C12886 +xref: NCIT:C33436 +xref: Renal:pyramids +xref: UMLS:C0227629 {source="ncithesaurus:Renal_Pyramid"} +xref: UMLS:C1514613 {source="ncithesaurus:Pyramid_of_Malpighi"} +is_a: UBERON:0000064 ! organ part +disjoint_from: UBERON:0005159 ! pyramid of medulla oblongata +relationship: contributes_to_morphology_of UBERON:0000362 ! renal medulla +relationship: fma_set_term FMA:74268 +relationship: part_of UBERON:0000362 ! renal medulla + +[Term] +id: UBERON:0004201 +name: kidney outer medulla inner stripe +def: "The inner stripe is a deep, centrally located portion of the renal outer medulla and is traversed by thick and thin portions of nephron tubules" [GO:0072057] +subset: pheno_slim +synonym: "inner stripe" EXACT [GO:0072057] +synonym: "inner stripe of medulla of kidney" EXACT [FMA:76663] +synonym: "inner stripe of outer medulla" EXACT [EMAPA:29675] +synonym: "inner stripe of renal medulla" EXACT [FMA:76663] +synonym: "outer medulla inner stripe" EXACT [MA:0002626] +synonym: "stria interna medullae renalis" EXACT LATIN [FMA:76663, FMA:TA] +xref: EMAPA:29675 +xref: FMA:76663 +xref: MA:0002626 +is_a: UBERON:0010000 ! multicellular anatomical structure +relationship: contributes_to_morphology_of UBERON:0001293 ! outer medulla of kidney +relationship: part_of UBERON:0001293 ! outer medulla of kidney + +[Term] +id: UBERON:0004202 +name: kidney outer medulla outer stripe +def: "The outer stripe is the region of the kidney that lies distal to the line of termination of the straight renal tubules" [GO:0072058] +subset: pheno_slim +synonym: "outer medulla outer stripe" EXACT [MA:0002629] +synonym: "outer stripe" EXACT [GO:0072058] +synonym: "outer stripe of medulla of kidney" EXACT [FMA:76662] +synonym: "outer stripe of outer medulla" EXACT [EMAPA:29663] +synonym: "outer stripe of renal medulla" EXACT [FMA:76662] +synonym: "stria externa medullae renalis" EXACT LATIN [FMA:76662, FMA:TA] +xref: EMAPA:29663 +xref: FMA:76662 +xref: MA:0002629 +is_a: UBERON:0010000 ! multicellular anatomical structure +relationship: contributes_to_morphology_of UBERON:0001293 ! outer medulla of kidney +relationship: part_of UBERON:0001293 ! outer medulla of kidney + +[Term] +id: UBERON:0004203 +name: cortical collecting duct +alt_id: UBERON:0005267 +def: "The cortical collecting duct is the portion of the collecting duct that resides in the renal cortex" [GO:0072059] +synonym: "kidney cortex collecting duct" EXACT [MA:0002600] +synonym: "renal cortex collecting duct" RELATED [MA:0002600] +xref: BTO:0002643 +xref: EMAPA:28130 +xref: MA:0002600 +is_a: UBERON:0013522 ! subdivision of tube +intersection_of: UBERON:0013522 ! subdivision of tube +intersection_of: part_of UBERON:0001225 ! cortex of kidney +intersection_of: part_of UBERON:0001232 ! collecting duct of renal tubule +relationship: part_of UBERON:0001225 ! cortex of kidney +relationship: part_of UBERON:0001232 ! collecting duct of renal tubule + +[Term] +id: UBERON:0004204 +name: outer medullary collecting duct +alt_id: UBERON:0005186 +def: "The outer medullary collecting duct is the portion of the collecting duct that lies in the renal outer medulla" [GO:0072060] +synonym: "kidney outer medulla collecting duct" EXACT [MA:0002599] +synonym: "outer renal medulla collecting duct" EXACT [MA:0002599] +xref: EMAPA:28346 +xref: MA:0002599 +is_a: UBERON:0001232 ! collecting duct of renal tubule +intersection_of: UBERON:0001232 ! collecting duct of renal tubule +intersection_of: part_of UBERON:0001293 ! outer medulla of kidney +relationship: part_of UBERON:0001293 ! outer medulla of kidney + +[Term] +id: UBERON:0004205 +name: inner medullary collecting duct +alt_id: UBERON:0005187 +def: "The inner medullary collecting duct is the portion of the collecting duct that lies in the renal inner medulla" [GO:0072061] +synonym: "inner renal medulla collecting duct" EXACT [MA:0002598] +synonym: "kidney inner medulla collecting duct" EXACT [MA:0002598] +synonym: "papillary collecting duct" RELATED [MA:0002598] +xref: BTO:0004544 +xref: EMAPA:28370 +xref: MA:0002598 +is_a: UBERON:0001232 ! collecting duct of renal tubule +intersection_of: UBERON:0001232 ! collecting duct of renal tubule +intersection_of: part_of UBERON:0001294 ! inner medulla of kidney +relationship: part_of UBERON:0001294 ! inner medulla of kidney + +[Term] +id: UBERON:0004206 +name: long descending thin limb bend +def: "The long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment" [GO:0072065] +is_a: UBERON:0006555 ! excretory tube +relationship: part_of UBERON:0001289 ! descending limb of loop of Henle + +[Term] +id: UBERON:0004207 +name: prebend segment of loop of Henle +def: "The prebend segment is a part of the descending thin limb that lies before the bend and exhibits robust sodium chloride reabsorption" [GO:0072066] +synonym: "prebend segment" RELATED [GO:0072066] +is_a: UBERON:0006555 ! excretory tube +relationship: part_of UBERON:0001289 ! descending limb of loop of Henle +relationship: part_of UBERON:0005096 {source="GO"} ! descending thin limb + +[Term] +id: UBERON:0004208 +name: nephrogenic mesenchyme +def: "Nephrogenic mesenchyme is the tissue made up of loosely connected mesenchymal cells in the nephron" [GO:0072076] +comment: The detailed events associated with the differentiation of the nephrogenic mesenchyme are somewhat complex. It has been suggested that each terminal branch of the ureteric bud stimulates the associated cap mesenchyme tissue to form a renal vesicle (the most primitive stage of nephron development: a stage I nephron). This then elongates, becomes a comma-shaped and then an S-shaped body (stage II nephron), and makes contact with and fuses with the distal component of the ureteric bud. The latter then forms the collecting duct. One fold of the S-shaped body gives rise to Bowman's capsule (also termed the glomerular capsule). Soon afterwards, endothelial cells invade to make a capillary knot-like outgrowth, the glomerular tuft, which goes on to form the glomerulus. The inner epithelial layer of the Bowman's capsule (also called the visceral epithelium, or podocyte layer because it consists of podocytes) is closely apposed to the endothelial glomerulus. Together, the Bowman's capsule and the glomerulus comprise the definitive renal corpuscle. The rest of the nephron elongates to form components of the proximal tubule, the loop of Henle and the distal tubule. The distal pole of the developing nephron connects to the ureteric bud that induced it at an early stage of nephron/ collecting duct development, before differentiation of the proximal tubule, the loop of Henle and the distal tubule are complete. This connection allows the excretory products produced by the kidney to be removed and subsequently transferred, via the ureter, into the bladder where they are stored until it is appropriate to empty the bladder. [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] +synonym: "mesenchyme of nephron" EXACT [OBOL:automatic] +synonym: "nephron mesenchyme" EXACT [OBOL:automatic] +is_a: UBERON:0003104 ! mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: has_potential_to_develop_into UBERON:0001285 ! nephron +relationship: has_potential_to_develop_into UBERON:0001285 ! nephron + +[Term] +id: UBERON:0004209 +name: renal vesicle +def: "The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells." [GO:0072077] +synonym: "stage I nephron" EXACT [http://www.gudmap.org/Organ_Summaries/Metanephros/Renal_vesicle.html, ZFA:0005586] +is_a: UBERON:0007503 {source="EHDAA2"} ! epithelial vesicle +relationship: developmentally_induced_by UBERON:0000084 ! ureteric bud +relationship: develops_from UBERON:0004208 ! nephrogenic mesenchyme +relationship: has_potential_to_develop_into UBERON:0004211 ! nephron epithelium +relationship: part_of UBERON:0010536 ! nephron progenitor + +[Term] +id: UBERON:0004211 +name: nephron epithelium +def: "The nephron epithelium is a tissue that covers the surface of a nephron" [GO:0072088] +synonym: "epithelial tissue of nephron" EXACT [OBOL:automatic] +synonym: "epithelium of nephron" EXACT [OBOL:automatic] +synonym: "nephron epithelial tissue" EXACT [OBOL:automatic] +is_a: UBERON:0004819 ! kidney epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001285 ! nephron +relationship: part_of UBERON:0001285 ! nephron + +[Term] +id: UBERON:0004212 +name: glomerular capillary +def: "the small branching blood vessels in the kidney glomerulus that receives blood from the kidney afferent arterioles; these capillaries are under high pressure for filtering within the glomerulus" [MGI:csmith, MP:0011320] +subset: pheno_slim +subset: vertebrate_core +synonym: "blood capillary of renal glomerulus" EXACT [OBOL:automatic] +synonym: "capillary of renal glomerulus" EXACT [OBOL:automatic] +synonym: "capillary vessel of renal glomerulus" EXACT [OBOL:automatic] +synonym: "glomerular capillaries" RELATED PLURAL [] +synonym: "glomerular capillary system" RELATED [MA:0002587] +synonym: "renal glomerulus blood capillary" EXACT [OBOL:automatic] +synonym: "renal glomerulus capillary" EXACT [OBOL:automatic] +synonym: "renal glomerulus capillary vessel" EXACT [OBOL:automatic] +xref: EMAPA:28245 +xref: FMA:274259 +xref: http://linkedlifedata.com/resource/umls/id/C0226356 +xref: http://www.snomedbrowser.com/Codes/Details/362049007 +xref: MA:0002587 +xref: NCIT:C32684 +xref: TAO:0005284 +xref: UMLS:C0226356 {source="ncithesaurus:Glomerular_Capillary"} +xref: ZFA:0005284 +is_a: UBERON:0003527 ! kidney capillary +intersection_of: UBERON:0001982 ! capillary +intersection_of: part_of UBERON:0000074 ! renal glomerulus +relationship: contributes_to_morphology_of UBERON:0000074 ! renal glomerulus +relationship: part_of UBERON:0004190 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! renal glomerulus vasculature + +[Term] +id: UBERON:0004214 +name: upper leg nerve +def: "A nerve that is part of a hindlimb stylopod [Automatically generated definition]." [OBOL:automatic] +synonym: "hind limb stylopod nerve" EXACT [OBOL:automatic] +synonym: "hindlimb stylopod nerve" EXACT [OBOL:automatic] +synonym: "lower extremity stylopod nerve" EXACT [OBOL:automatic] +synonym: "thigh RELATED" EXACT [OBOL:automatic] +xref: EMAPA:37344 {source="MA:th"} +xref: MA:0000685 +is_a: UBERON:0003431 ! leg nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0000376 ! hindlimb stylopod +relationship: part_of UBERON:0000376 ! hindlimb stylopod + +[Term] +id: UBERON:0004215 +name: back nerve +def: "A nerve that is part of a back [Automatically generated definition]." [OBOL:automatic] +synonym: "nerve of back" EXACT [OBOL:automatic] +xref: EMAPA:37268 {source="MA:th"} +xref: MA:0000497 +is_a: UBERON:0001021 ! nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0001137 ! dorsum +relationship: part_of UBERON:0001137 ! dorsum + +[Term] +id: UBERON:0004216 +name: lower arm nerve +def: "A nerve that is part of a lower arm [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:37338 {source="MA:th"} +xref: MA:0000601 +is_a: UBERON:0003433 ! arm nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0002386 ! forelimb zeugopod +relationship: part_of UBERON:0002386 ! forelimb zeugopod + +[Term] +id: UBERON:0004217 +name: upper arm nerve +def: "A nerve that is part of a forelimb stylopod [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:37337 {source="MA:th"} +xref: MA:0000607 +is_a: UBERON:0003433 ! arm nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0003822 ! forelimb stylopod +relationship: part_of UBERON:0003822 ! forelimb stylopod + +[Term] +id: UBERON:0004218 +name: lower leg nerve +def: "A nerve that is part of a lower leg [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:37345 {source="MA:th"} +xref: MA:0000679 +is_a: UBERON:0003431 ! leg nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod +relationship: part_of UBERON:0003823 ! hindlimb zeugopod + +[Term] +id: UBERON:0004219 +name: urethra smooth muscle layer +def: "A portion of smooth muscle tissue that is part of a urethra [Automatically generated definition]." [OBOL:automatic] +synonym: "muscle layer of urethra" EXACT [FMA:76909] +synonym: "muscular coat of urethra" EXACT [FMA:76909] +synonym: "muscular layer of urethra" EXACT [FMA:76909] +synonym: "smooth muscle of urethra" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of urethra" EXACT [OBOL:automatic] +synonym: "tunica muscularis urethrae" EXACT LATIN [FMA:TA] +synonym: "urethra smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "urethral smooth muscle" RELATED [MA:0001691] +xref: EMAPA:36630 +xref: FMA:76909 +xref: MA:0001691 +is_a: UBERON:0001135 ! smooth muscle tissue +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0000057 ! urethra +relationship: part_of UBERON:0000057 ! urethra + +[Term] +id: UBERON:0004220 +name: large intestine smooth muscle +def: "A portion of smooth muscle tissue that is part of a large intestine [Automatically generated definition]." [OBOL:automatic] +synonym: "involuntary muscle of large intestine" EXACT [OBOL:automatic] +synonym: "large intestine involuntary muscle" EXACT [OBOL:automatic] +synonym: "large intestine non-striated muscle" EXACT [OBOL:automatic] +synonym: "large intestine smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "non-striated muscle of large intestine" EXACT [OBOL:automatic] +synonym: "smooth muscle of large intestine" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of large intestine" EXACT [OBOL:automatic] +xref: EMAPA:35469 +xref: MA:0001547 +is_a: UBERON:0004221 ! intestine smooth muscle +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0000059 ! large intestine +relationship: part_of UBERON:0001169 {source="MA"} ! wall of large intestine + +[Term] +id: UBERON:0004221 +name: intestine smooth muscle +def: "A portion of smooth muscle tissue that is part of a intestine [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "bowel involuntary muscle" EXACT [OBOL:automatic] +synonym: "bowel non-striated muscle" EXACT [OBOL:automatic] +synonym: "bowel smooth muscle" EXACT [OBOL:automatic] +synonym: "bowel smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "intestinal muscularis" RELATED [EMAPA:35441] +synonym: "intestinal smooth muscle" RELATED [BTO:0000643] +synonym: "intestine involuntary muscle" EXACT [OBOL:automatic] +synonym: "intestine non-striated muscle" EXACT [OBOL:automatic] +synonym: "intestine smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "involuntary muscle of bowel" EXACT [OBOL:automatic] +synonym: "involuntary muscle of intestine" EXACT [OBOL:automatic] +synonym: "non-striated muscle of bowel" EXACT [OBOL:automatic] +synonym: "non-striated muscle of intestine" EXACT [OBOL:automatic] +synonym: "smooth muscle of bowel" EXACT [OBOL:automatic] +synonym: "smooth muscle of intestine" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of bowel" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of intestine" EXACT [OBOL:automatic] +xref: BTO:0000643 +xref: EMAPA:35441 +xref: EMAPA:35443 +xref: http://linkedlifedata.com/resource/umls/id/C1708547 +xref: MA:0001539 +xref: NCIT:C49243 +xref: UMLS:C1708547 {source="ncithesaurus:Intestinal_Smooth_Muscle_Tissue"} +is_a: UBERON:0004226 ! gastrointestinal system smooth muscle +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0000160 ! intestine +relationship: contributes_to_morphology_of UBERON:0000160 ! intestine +relationship: part_of UBERON:0001262 ! wall of intestine + +[Term] +id: UBERON:0004222 +name: stomach smooth muscle +def: "A portion of smooth muscle tissue that is part of a stomach [Automatically generated definition]." [OBOL:automatic] +synonym: "gastric muscle" RELATED [BTO:0001818] +synonym: "gastric smooth muscle" RELATED [MA:0001627] +synonym: "involuntary muscle of stomach" EXACT [OBOL:automatic] +synonym: "involuntary muscle of ventriculus" EXACT [OBOL:automatic] +synonym: "non-striated muscle of stomach" EXACT [OBOL:automatic] +synonym: "non-striated muscle of ventriculus" EXACT [OBOL:automatic] +synonym: "smooth muscle of stomach" EXACT [OBOL:automatic] +synonym: "smooth muscle of ventriculus" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of stomach" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of ventriculus" EXACT [OBOL:automatic] +synonym: "stomach involuntary muscle" EXACT [OBOL:automatic] +synonym: "stomach muscle" RELATED [BTO:0001818] +synonym: "stomach non-striated muscle" EXACT [OBOL:automatic] +synonym: "stomach smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "ventriculus involuntary muscle" EXACT [OBOL:automatic] +synonym: "ventriculus non-striated muscle" EXACT [OBOL:automatic] +synonym: "ventriculus smooth muscle" EXACT [OBOL:automatic] +synonym: "ventriculus smooth muscle tissue" EXACT [OBOL:automatic] +xref: BTO:0001818 +xref: EMAPA:35823 +xref: MA:0001627 +is_a: UBERON:0004226 ! gastrointestinal system smooth muscle +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0000945 ! stomach +relationship: part_of UBERON:0001167 ! wall of stomach + +[Term] +id: UBERON:0004223 +name: vagina smooth muscle +def: "A portion of smooth muscle tissue that is part of a vagina [Automatically generated definition]." [OBOL:automatic] +synonym: "involuntary muscle of vagina" EXACT [OBOL:automatic] +synonym: "non-striated muscle of vagina" EXACT [OBOL:automatic] +synonym: "smooth muscle of vagina" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of vagina" EXACT [OBOL:automatic] +synonym: "vagina involuntary muscle" EXACT [OBOL:automatic] +synonym: "vagina non-striated muscle" EXACT [OBOL:automatic] +synonym: "vagina smooth muscle" RELATED [BTO:0004999] +synonym: "vagina smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "vaginal smooth muscle" EXACT [BTO:0004999] +xref: BTO:0004999 +xref: EMAPA:30997 +xref: MA:0001733 +is_a: UBERON:0001135 ! smooth muscle tissue +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0000996 ! vagina +relationship: part_of UBERON:0000996 ! vagina + +[Term] +id: UBERON:0004224 +name: muscular coat of vas deferens +def: "A muscular coat that is part of a vas deferens [Automatically generated definition]." [OBOL:automatic] +synonym: "muscle layer of deferent duct" EXACT [FMA:19239] +synonym: "muscle layer of ductus deferens" EXACT [FMA:19239] +synonym: "muscle layer of vas deferens" EXACT [FMA:19239] +synonym: "muscular coat of ductus deferens" EXACT [FMA:19239] +synonym: "muscular layer of ductus deferens" EXACT [FMA:19239] +synonym: "muscularis of vas deferens" EXACT [FMA:19239] +synonym: "tunica muscularis (ductus deferens)" EXACT [FMA:19239] +synonym: "tunica muscularis ductus deferentis" EXACT LATIN [FMA:19239, FMA:TA] +xref: EMAPA:29270 +xref: FMA:19239 +xref: http://www.snomedbrowser.com/Codes/Details/299705008 +xref: MA:0001750 +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0006660 ! muscular coat +is_a: UBERON:0034933 ! layer of smooth muscle tissue +intersection_of: UBERON:0006660 ! muscular coat +intersection_of: part_of UBERON:0001000 ! vas deferens +relationship: part_of UBERON:0001000 ! vas deferens + +[Term] +id: UBERON:0004225 +name: respiratory system smooth muscle +def: "A portion of smooth muscle tissue that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +synonym: "airway smooth muscle" RELATED [BTO:0001660] +synonym: "airway smooth muscle cell" RELATED [BTO:0001660] +synonym: "respiratory smooth muscle" EXACT [BTO:0001660] +synonym: "smooth muscle of respiratory system" EXACT [OBOL:automatic] +xref: BTO:0001660 +xref: EMAPA:35734 +xref: MA:0001830 +is_a: UBERON:0001135 ! smooth muscle tissue +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0004226 +name: gastrointestinal system smooth muscle +def: "A portion of smooth muscle tissue that is part of a digestive system [Automatically generated definition]." [OBOL:automatic] +synonym: "smooth muscle tissue of gastrointestinal system" EXACT [OBOL:automatic] +xref: EMAPA:35117 +xref: MA:0001523 +is_a: UBERON:0001135 ! smooth muscle tissue +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0005409 ! alimentary part of gastrointestinal system +relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system + +[Term] +id: UBERON:0004227 +name: kidney pelvis smooth muscle +def: "the smooth muscle tissue surrounding the urothelium of the kidney pelvis" [MGI:csmith, MP:0011335] +subset: pheno_slim +synonym: "kidney pelvis smooth muscle" EXACT [EMAPA:28120] +synonym: "pelvic smooth muscle" RELATED [EMAPA:28120] +synonym: "renal pelvis smooth muscle" EXACT [EMAPA:28120] +synonym: "smooth muscle tissue of renal pelvis" EXACT [FMA:262022] +xref: EMAPA:28120 +xref: FMA:262022 +xref: MA:0002631 +is_a: UBERON:0001135 ! smooth muscle tissue +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0001224 ! renal pelvis +relationship: contributes_to_morphology_of UBERON:0001224 ! renal pelvis +relationship: part_of UBERON:0001224 ! renal pelvis + +[Term] +id: UBERON:0004228 +name: urinary bladder smooth muscle +def: "A portion of smooth muscle tissue that is part of a urinary bladder [Automatically generated definition]." [OBOL:automatic] +synonym: "bladder involuntary muscle" EXACT [OBOL:automatic] +synonym: "bladder non-striated muscle" EXACT [OBOL:automatic] +synonym: "bladder smooth muscle" EXACT [OBOL:automatic] +synonym: "bladder smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "involuntary muscle of bladder" EXACT [OBOL:automatic] +synonym: "involuntary muscle of urinary bladder" EXACT [OBOL:automatic] +synonym: "non-striated muscle of bladder" EXACT [OBOL:automatic] +synonym: "non-striated muscle of urinary bladder" EXACT [OBOL:automatic] +synonym: "smooth muscle layer of bladder" RELATED [] +synonym: "smooth muscle of bladder" EXACT [OBOL:automatic] +synonym: "smooth muscle of urinary bladder" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of bladder" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of urinary bladder" EXACT [OBOL:automatic] +synonym: "urinary bladder involuntary muscle" EXACT [OBOL:automatic] +synonym: "urinary bladder muscle" EXACT [MA:0001697] +synonym: "urinary bladder non-striated muscle" EXACT [OBOL:automatic] +synonym: "urinary bladder smooth muscle tissue" EXACT [OBOL:automatic] +xref: BTO:0001849 +xref: CALOHA:TS-1087 +xref: EMAPA:37791 {source="MA:th"} +xref: MA:0001697 +is_a: UBERON:0001135 ! smooth muscle tissue +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0001255 ! urinary bladder +relationship: part_of UBERON:0001255 ! urinary bladder + +[Term] +id: UBERON:0004229 +name: urinary bladder trigone smooth muscle +def: "A portion of smooth muscle tissue that is part of a trigone of urinary bladder [Automatically generated definition]." [OBOL:automatic] +synonym: "deep trigone involuntary muscle" EXACT [OBOL:automatic] +synonym: "deep trigone non-striated muscle" EXACT [OBOL:automatic] +synonym: "deep trigone smooth muscle" EXACT [OBOL:automatic] +synonym: "deep trigone smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "involuntary muscle of deep trigone" EXACT [OBOL:automatic] +synonym: "involuntary muscle of Lieutaud's trigone" EXACT [OBOL:automatic] +synonym: "involuntary muscle of trigone of bladder" EXACT [OBOL:automatic] +synonym: "involuntary muscle of trigone of urinary bladder" EXACT [OBOL:automatic] +synonym: "involuntary muscle of urinary bladder trigone" EXACT [OBOL:automatic] +synonym: "involuntary muscle of vesical trigone" EXACT [OBOL:automatic] +synonym: "Lieutaud's trigone involuntary muscle" EXACT [OBOL:automatic] +synonym: "Lieutaud's trigone non-striated muscle" EXACT [OBOL:automatic] +synonym: "Lieutaud's trigone smooth muscle" EXACT [OBOL:automatic] +synonym: "Lieutaud's trigone smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "non-striated muscle of deep trigone" EXACT [OBOL:automatic] +synonym: "non-striated muscle of Lieutaud's trigone" EXACT [OBOL:automatic] +synonym: "non-striated muscle of trigone of bladder" EXACT [OBOL:automatic] +synonym: "non-striated muscle of trigone of urinary bladder" EXACT [OBOL:automatic] +synonym: "non-striated muscle of urinary bladder trigone" EXACT [OBOL:automatic] +synonym: "non-striated muscle of vesical trigone" EXACT [OBOL:automatic] +synonym: "smooth muscle of deep trigone" EXACT [OBOL:automatic] +synonym: "smooth muscle of Lieutaud's trigone" EXACT [OBOL:automatic] +synonym: "smooth muscle of trigone of bladder" EXACT [OBOL:automatic] +synonym: "smooth muscle of trigone of urinary bladder" EXACT [OBOL:automatic] +synonym: "smooth muscle of urinary bladder trigone" EXACT [OBOL:automatic] +synonym: "smooth muscle of vesical trigone" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of deep trigone" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of Lieutaud's trigone" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of trigone of bladder" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of trigone of urinary bladder" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of urinary bladder trigone" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of vesical trigone" EXACT [OBOL:automatic] +synonym: "trigone of bladder involuntary muscle" EXACT [OBOL:automatic] +synonym: "trigone of bladder non-striated muscle" EXACT [OBOL:automatic] +synonym: "trigone of bladder smooth muscle" EXACT [OBOL:automatic] +synonym: "trigone of bladder smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "trigone of urinary bladder involuntary muscle" EXACT [OBOL:automatic] +synonym: "trigone of urinary bladder non-striated muscle" EXACT [OBOL:automatic] +synonym: "trigone of urinary bladder smooth muscle" EXACT [OBOL:automatic] +synonym: "trigone of urinary bladder smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "urinary bladder trigone involuntary muscle" EXACT [OBOL:automatic] +synonym: "urinary bladder trigone muscle" EXACT [MA:0001700] +synonym: "urinary bladder trigone non-striated muscle" EXACT [OBOL:automatic] +synonym: "urinary bladder trigone smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "vesical trigone involuntary muscle" EXACT [OBOL:automatic] +synonym: "vesical trigone non-striated muscle" EXACT [OBOL:automatic] +synonym: "vesical trigone smooth muscle" EXACT [OBOL:automatic] +synonym: "vesical trigone smooth muscle tissue" EXACT [OBOL:automatic] +xref: EMAPA:28649 +xref: MA:0001700 +is_a: UBERON:0004228 ! urinary bladder smooth muscle +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0001257 ! trigone of urinary bladder +relationship: part_of UBERON:0001257 ! trigone of urinary bladder + +[Term] +id: UBERON:0004230 +name: urinary bladder neck smooth muscle +def: "A portion of smooth muscle tissue that is part of a neck of urinary bladder [Automatically generated definition]." [OBOL:automatic] +synonym: "bladder neck involuntary muscle" EXACT [OBOL:automatic] +synonym: "bladder neck non-striated muscle" EXACT [OBOL:automatic] +synonym: "bladder neck smooth muscle" EXACT [OBOL:automatic] +synonym: "bladder neck smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "involuntary muscle of bladder neck" EXACT [OBOL:automatic] +synonym: "involuntary muscle of neck of bladder" EXACT [OBOL:automatic] +synonym: "involuntary muscle of neck of urinary bladder" EXACT [OBOL:automatic] +synonym: "involuntary muscle of urinary bladder neck" EXACT [OBOL:automatic] +synonym: "involuntary muscle of vesical neck" EXACT [OBOL:automatic] +synonym: "neck of bladder involuntary muscle" EXACT [OBOL:automatic] +synonym: "neck of bladder non-striated muscle" EXACT [OBOL:automatic] +synonym: "neck of bladder smooth muscle" EXACT [OBOL:automatic] +synonym: "neck of bladder smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "neck of urinary bladder involuntary muscle" EXACT [OBOL:automatic] +synonym: "neck of urinary bladder non-striated muscle" EXACT [OBOL:automatic] +synonym: "neck of urinary bladder smooth muscle" EXACT [OBOL:automatic] +synonym: "neck of urinary bladder smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "non-striated muscle of bladder neck" EXACT [OBOL:automatic] +synonym: "non-striated muscle of neck of bladder" EXACT [OBOL:automatic] +synonym: "non-striated muscle of neck of urinary bladder" EXACT [OBOL:automatic] +synonym: "non-striated muscle of urinary bladder neck" EXACT [OBOL:automatic] +synonym: "non-striated muscle of vesical neck" EXACT [OBOL:automatic] +synonym: "smooth muscle of bladder neck" EXACT [OBOL:automatic] +synonym: "smooth muscle of neck of bladder" EXACT [OBOL:automatic] +synonym: "smooth muscle of neck of urinary bladder" EXACT [OBOL:automatic] +synonym: "smooth muscle of urinary bladder neck" EXACT [OBOL:automatic] +synonym: "smooth muscle of vesical neck" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of bladder neck" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of neck of bladder" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of neck of urinary bladder" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of urinary bladder neck" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of vesical neck" EXACT [OBOL:automatic] +synonym: "trigonal muscle" EXACT [FMA:67990] +synonym: "trigonal muscle of urinary bladder" EXACT [FMA:67990] +synonym: "urinary bladder neck involuntary muscle" EXACT [OBOL:automatic] +synonym: "urinary bladder neck muscle" EXACT [MA:0001699] +synonym: "urinary bladder neck non-striated muscle" EXACT [OBOL:automatic] +synonym: "urinary bladder neck smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "vesical neck involuntary muscle" EXACT [OBOL:automatic] +synonym: "vesical neck non-striated muscle" EXACT [OBOL:automatic] +synonym: "vesical neck smooth muscle" EXACT [OBOL:automatic] +synonym: "vesical neck smooth muscle tissue" EXACT [OBOL:automatic] +xref: EMAPA:30123 +xref: FMA:67990 +xref: MA:0001699 +is_a: UBERON:0004228 ! urinary bladder smooth muscle +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0001258 ! neck of urinary bladder +relationship: part_of UBERON:0001258 ! neck of urinary bladder + +[Term] +id: UBERON:0004231 +name: anal region smooth muscle +def: "A portion of smooth muscle tissue that is part of an anal region [Automatically generated definition]." [OBOL:automatic] +synonym: "anal part of perineum involuntary muscle" EXACT [OBOL:automatic] +synonym: "anal part of perineum non-striated muscle" EXACT [OBOL:automatic] +synonym: "anal part of perineum smooth muscle" EXACT [OBOL:automatic] +synonym: "anal part of perineum smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "anal region involuntary muscle" EXACT [OBOL:automatic] +synonym: "anal region non-striated muscle" EXACT [OBOL:automatic] +synonym: "anal region smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "anal triangle involuntary muscle" EXACT [OBOL:automatic] +synonym: "anal triangle non-striated muscle" EXACT [OBOL:automatic] +synonym: "anal triangle smooth muscle" EXACT [OBOL:automatic] +synonym: "anal triangle smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "involuntary muscle of anal part of perineum" EXACT [OBOL:automatic] +synonym: "involuntary muscle of anal region" EXACT [OBOL:automatic] +synonym: "involuntary muscle of anal triangle" EXACT [OBOL:automatic] +synonym: "non-striated muscle of anal part of perineum" EXACT [OBOL:automatic] +synonym: "non-striated muscle of anal region" EXACT [OBOL:automatic] +synonym: "non-striated muscle of anal triangle" EXACT [OBOL:automatic] +synonym: "smooth muscle of anal part of perineum" EXACT [OBOL:automatic] +synonym: "smooth muscle of anal region" EXACT [OBOL:automatic] +synonym: "smooth muscle of anal triangle" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of anal part of perineum" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of anal region" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of anal triangle" EXACT [OBOL:automatic] +xref: EMAPA:37394 {source="MA:th"} +xref: MA:0001532 +is_a: UBERON:0001135 ! smooth muscle tissue +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0001353 ! anal region +relationship: part_of UBERON:0001353 ! anal region + +[Term] +id: UBERON:0004232 +name: lymphatic vessel smooth muscle +def: "A portion of smooth muscle tissue that is part of a lymphatic vessel [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "involuntary muscle of lymph vessel" EXACT [OBOL:automatic] +synonym: "involuntary muscle of lymphatic vessel" EXACT [OBOL:automatic] +synonym: "lymph vessel involuntary muscle" EXACT [OBOL:automatic] +synonym: "lymph vessel non-striated muscle" EXACT [OBOL:automatic] +synonym: "lymph vessel smooth muscle" EXACT [OBOL:automatic] +synonym: "lymph vessel smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "lymphatic vessel involuntary muscle" EXACT [OBOL:automatic] +synonym: "lymphatic vessel non-striated muscle" EXACT [OBOL:automatic] +synonym: "lymphatic vessel smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "non-striated muscle of lymph vessel" EXACT [OBOL:automatic] +synonym: "non-striated muscle of lymphatic vessel" EXACT [OBOL:automatic] +synonym: "smooth muscle of lymph vessel" EXACT [OBOL:automatic] +synonym: "smooth muscle of lymphatic vessel" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of lymph vessel" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of lymphatic vessel" EXACT [OBOL:automatic] +xref: EMAPA:36313 +xref: FMA:262026 +xref: http://linkedlifedata.com/resource/umls/id/C1708791 +xref: MA:0000751 +xref: NCIT:C49260 +xref: UMLS:C1708791 {source="ncithesaurus:Lymphatic_Vessel_Smooth_Muscle_Tissue"} +is_a: UBERON:0001135 ! smooth muscle tissue +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0001473 ! lymphatic vessel +relationship: contributes_to_morphology_of UBERON:0001473 ! lymphatic vessel +relationship: part_of UBERON:0001473 ! lymphatic vessel + +[Term] +id: UBERON:0004233 +name: lower respiratory tract smooth muscle +def: "A portion of smooth muscle tissue that is part of a lower respiratory tract [Automatically generated definition]." [OBOL:automatic] +synonym: "involuntary muscle of lower respiratory tract" EXACT [OBOL:automatic] +synonym: "lower respiratory tract involuntary muscle" EXACT [OBOL:automatic] +synonym: "lower respiratory tract non-striated muscle" EXACT [OBOL:automatic] +synonym: "lower respiratory tract smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "non-striated muscle of lower respiratory tract" EXACT [OBOL:automatic] +synonym: "smooth muscle of lower respiratory tract" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of lower respiratory tract" EXACT [OBOL:automatic] +xref: EMAPA:35520 +xref: MA:0002410 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0004225 ! respiratory system smooth muscle +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0001558 ! lower respiratory tract +relationship: part_of UBERON:0001558 ! lower respiratory tract + +[Term] +id: UBERON:0004234 +name: iris smooth muscle +def: "A portion of smooth muscle tissue that is part of a iris [Automatically generated definition]." [OBOL:automatic] +synonym: "involuntary muscle of iris" EXACT [OBOL:automatic] +synonym: "iridial smooth muscle" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "iris involuntary muscle" EXACT [OBOL:automatic] +synonym: "iris non-striated muscle" EXACT [OBOL:automatic] +synonym: "iris smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "non-striated muscle of iris" EXACT [OBOL:automatic] +synonym: "smooth muscle of iris" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of iris" EXACT [OBOL:automatic] +xref: BTO:0000655 +xref: EMAPA:35448 +xref: FMA:312338 +xref: MA:0001270 +is_a: UBERON:0003386 {source="MA"} ! smooth muscle of eye +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0001769 ! iris +relationship: part_of UBERON:0001606 ! muscle of iris + +[Term] +id: UBERON:0004235 +name: mammary gland smooth muscle +def: "A portion of smooth muscle tissue that is part of a mammary gland [Automatically generated definition]." [OBOL:automatic] +synonym: "smooth muscle tissue of mammary gland" EXACT [OBOL:automatic] +xref: EMAPA:37669 {source="MA:th"} +xref: MA:0000795 +is_a: UBERON:0001135 ! smooth muscle tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0001911 ! mammary gland +relationship: part_of UBERON:0001911 ! mammary gland + +[Term] +id: UBERON:0004236 +name: arteriole smooth muscle +def: "A portion of smooth muscle tissue that is part of an arteriole [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:36287 +xref: FMA:312251 +xref: MA:0000706 +is_a: UBERON:0004237 ! blood vessel smooth muscle +is_a: UBERON:0004695 ! arterial system smooth muscle +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0001980 ! arteriole +relationship: part_of UBERON:0001980 ! arteriole + +[Term] +id: UBERON:0004237 +name: blood vessel smooth muscle +alt_id: UBERON:0010508 +def: "smooth muscle found within, and composing the majority of the wall of blood vessels." [http://en.wikipedia.org/wiki/Vascular_smooth_muscle] +subset: pheno_slim +synonym: "blood vessel involuntary muscle" EXACT [OBOL:automatic] +synonym: "blood vessel non-striated muscle" EXACT [OBOL:automatic] +synonym: "blood vessel smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "involuntary muscle of blood vessel" EXACT [OBOL:automatic] +synonym: "non-striated muscle of blood vessel" EXACT [OBOL:automatic] +synonym: "smooth muscle of blood vessel" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of blood vessel" EXACT [OBOL:automatic] +synonym: "vascular smooth muscle" EXACT [ZFA:0005321] +synonym: "vascular smooth muscle tissue" EXACT [] +xref: BTO:0001431 +xref: CALOHA:TS-1107 +xref: EMAPA:35177 +xref: http://en.wikipedia.org/wiki/Vascular_smooth_muscle +xref: http://linkedlifedata.com/resource/umls/id/C1519956 +xref: MA:0000710 +xref: MESH:D009131 +xref: NCIT:C33853 +xref: TAO:0005321 +xref: UMLS:C1519956 {source="ncithesaurus:Vascular_Smooth_Muscle_Tissue"} +xref: ZFA:0005321 +is_a: UBERON:0001135 ! smooth muscle tissue +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0001981 ! blood vessel +relationship: part_of UBERON:0001981 ! blood vessel + +[Term] +id: UBERON:0004238 +name: spleen smooth muscle +def: "A portion of smooth muscle tissue that is part of a spleen [Automatically generated definition]." [OBOL:automatic] +synonym: "involuntary muscle of spleen" EXACT [OBOL:automatic] +synonym: "non-striated muscle of spleen" EXACT [OBOL:automatic] +synonym: "smooth muscle of spleen" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of spleen" EXACT [OBOL:automatic] +synonym: "spleen involuntary muscle" EXACT [OBOL:automatic] +synonym: "spleen non-striated muscle" EXACT [OBOL:automatic] +synonym: "spleen smooth muscle tissue" EXACT [OBOL:automatic] +xref: EMAPA:35807 +xref: MA:0000757 +is_a: UBERON:0001135 ! smooth muscle tissue +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0002106 ! spleen +relationship: part_of UBERON:0002106 ! spleen + +[Term] +id: UBERON:0004239 +name: small intestine smooth muscle +def: "A portion of smooth muscle tissue that is part of a small intestine [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "involuntary muscle of small bowel" EXACT [OBOL:automatic] +synonym: "involuntary muscle of small intestine" EXACT [OBOL:automatic] +synonym: "non-striated muscle of small bowel" EXACT [OBOL:automatic] +synonym: "non-striated muscle of small intestine" EXACT [OBOL:automatic] +synonym: "small bowel involuntary muscle" EXACT [OBOL:automatic] +synonym: "small bowel non-striated muscle" EXACT [OBOL:automatic] +synonym: "small bowel smooth muscle" EXACT [OBOL:automatic] +synonym: "small bowel smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "small intestine involuntary muscle" EXACT [OBOL:automatic] +synonym: "small intestine non-striated muscle" EXACT [OBOL:automatic] +synonym: "small intestine smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "smooth muscle of small bowel" EXACT [OBOL:automatic] +synonym: "smooth muscle of small intestine" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of small bowel" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of small intestine" EXACT [OBOL:automatic] +xref: EMAPA:35783 +xref: MA:0001559 +is_a: UBERON:0004221 ! intestine smooth muscle +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0002108 ! small intestine +relationship: part_of UBERON:0001168 ! wall of small intestine + +[Term] +id: UBERON:0004240 +name: gall bladder smooth muscle +def: "A portion of smooth muscle tissue that is part of a gallbladder [Automatically generated definition]." [OBOL:automatic] +synonym: "biliary smooth muscle" RELATED [MA:0001635] +synonym: "gall bladder involuntary muscle" EXACT [OBOL:automatic] +synonym: "gall bladder non-striated muscle" EXACT [OBOL:automatic] +synonym: "gall bladder smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "gallbladder involuntary muscle" EXACT [OBOL:automatic] +synonym: "gallbladder non-striated muscle" EXACT [OBOL:automatic] +synonym: "gallbladder smooth muscle" EXACT [OBOL:automatic] +synonym: "gallbladder smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "involuntary muscle of gall bladder" EXACT [OBOL:automatic] +synonym: "involuntary muscle of gallbladder" EXACT [OBOL:automatic] +synonym: "non-striated muscle of gall bladder" EXACT [OBOL:automatic] +synonym: "non-striated muscle of gallbladder" EXACT [OBOL:automatic] +synonym: "smooth muscle of gall bladder" EXACT [OBOL:automatic] +synonym: "smooth muscle of gallbladder" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of gall bladder" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of gallbladder" EXACT [OBOL:automatic] +xref: EMAPA:35373 +xref: http://linkedlifedata.com/resource/umls/id/C1708179 +xref: MA:0001635 +xref: NCIT:C49483 +xref: UMLS:C1708179 {source="ncithesaurus:Gallbladder_Smooth_Muscle_Tissue"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0001135 ! smooth muscle tissue +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0002110 ! gall bladder +relationship: part_of UBERON:0002110 ! gall bladder + +[Term] +id: UBERON:0004241 +name: main bronchus smooth muscle +def: "A portion of smooth muscle tissue that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchus principalis involuntary muscle" EXACT [OBOL:automatic] +synonym: "bronchus principalis non-striated muscle" EXACT [OBOL:automatic] +synonym: "bronchus principalis smooth muscle" EXACT [OBOL:automatic] +synonym: "bronchus principalis smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "involuntary muscle of bronchus principalis" EXACT [OBOL:automatic] +synonym: "involuntary muscle of main bronchus" EXACT [OBOL:automatic] +synonym: "involuntary muscle of primary bronchus" EXACT [OBOL:automatic] +synonym: "involuntary muscle of principal bronchus" EXACT [OBOL:automatic] +synonym: "main bronchus involuntary muscle" EXACT [OBOL:automatic] +synonym: "main bronchus non-striated muscle" EXACT [OBOL:automatic] +synonym: "main bronchus smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "non-striated muscle of bronchus principalis" EXACT [OBOL:automatic] +synonym: "non-striated muscle of main bronchus" EXACT [OBOL:automatic] +synonym: "non-striated muscle of primary bronchus" EXACT [OBOL:automatic] +synonym: "non-striated muscle of principal bronchus" EXACT [OBOL:automatic] +synonym: "primary bronchus involuntary muscle" EXACT [OBOL:automatic] +synonym: "primary bronchus non-striated muscle" EXACT [OBOL:automatic] +synonym: "primary bronchus smooth muscle" EXACT [OBOL:automatic] +synonym: "primary bronchus smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "principal bronchus involuntary muscle" EXACT [OBOL:automatic] +synonym: "principal bronchus non-striated muscle" EXACT [OBOL:automatic] +synonym: "principal bronchus smooth muscle" EXACT [OBOL:automatic] +synonym: "principal bronchus smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "smooth muscle of bronchus principalis" EXACT [OBOL:automatic] +synonym: "smooth muscle of main bronchus" EXACT [OBOL:automatic] +synonym: "smooth muscle of primary bronchus" EXACT [OBOL:automatic] +synonym: "smooth muscle of principal bronchus" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of bronchus principalis" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of main bronchus" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of primary bronchus" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of principal bronchus" EXACT [OBOL:automatic] +xref: EMAPA:37551 {source="MA:th"} +xref: MA:0001848 +is_a: UBERON:0004242 ! bronchus smooth muscle +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0002182 ! main bronchus +relationship: part_of UBERON:0002182 ! main bronchus + +[Term] +id: UBERON:0004242 +name: bronchus smooth muscle +def: "A portion of smooth muscle tissue that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchi involuntary muscle" EXACT [OBOL:automatic] +synonym: "bronchi non-striated muscle" EXACT [OBOL:automatic] +synonym: "bronchi smooth muscle" EXACT [OBOL:automatic] +synonym: "bronchi smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "bronchial smooth muscle" RELATED [EMAPA:35195] +synonym: "bronchial trunk involuntary muscle" EXACT [OBOL:automatic] +synonym: "bronchial trunk non-striated muscle" EXACT [OBOL:automatic] +synonym: "bronchial trunk smooth muscle" EXACT [OBOL:automatic] +synonym: "bronchial trunk smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "bronchus involuntary muscle" EXACT [OBOL:automatic] +synonym: "bronchus non-striated muscle" EXACT [OBOL:automatic] +synonym: "bronchus smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "involuntary muscle of bronchi" EXACT [OBOL:automatic] +synonym: "involuntary muscle of bronchial trunk" EXACT [OBOL:automatic] +synonym: "involuntary muscle of bronchus" EXACT [OBOL:automatic] +synonym: "non-striated muscle of bronchi" EXACT [OBOL:automatic] +synonym: "non-striated muscle of bronchial trunk" EXACT [OBOL:automatic] +synonym: "non-striated muscle of bronchus" EXACT [OBOL:automatic] +synonym: "smooth muscle of bronchi" EXACT [OBOL:automatic] +synonym: "smooth muscle of bronchial trunk" EXACT [OBOL:automatic] +synonym: "smooth muscle of bronchus" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of bronchi" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of bronchial trunk" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of bronchus" EXACT [OBOL:automatic] +xref: BTO:0004401 +xref: EMAPA:35195 +xref: http://linkedlifedata.com/resource/umls/id/C1707055 +xref: MA:0001840 +xref: NCIT:C49213 +xref: UMLS:C1707055 {source="ncithesaurus:Bronchus_Smooth_Muscle_Tissue"} +is_a: UBERON:0004233 ! lower respiratory tract smooth muscle +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0002185 ! bronchus +relationship: part_of UBERON:0002185 ! bronchus + +[Term] +id: UBERON:0004243 +name: prostate gland smooth muscle +def: "A portion of smooth muscle tissue that is part of a prostate gland [Automatically generated definition]." [OBOL:automatic] +synonym: "involuntary muscle of prostate" EXACT [OBOL:automatic] +synonym: "involuntary muscle of prostate gland" EXACT [OBOL:automatic] +synonym: "muscular tissue of prostate" EXACT [FMA:74245] +synonym: "non-striated muscle of prostate" EXACT [OBOL:automatic] +synonym: "non-striated muscle of prostate gland" EXACT [OBOL:automatic] +synonym: "prostate gland involuntary muscle" EXACT [OBOL:automatic] +synonym: "prostate gland non-striated muscle" EXACT [OBOL:automatic] +synonym: "prostate gland smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "prostate involuntary muscle" EXACT [OBOL:automatic] +synonym: "prostate non-striated muscle" EXACT [OBOL:automatic] +synonym: "prostate smooth muscle" EXACT [OBOL:automatic] +synonym: "prostate smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "smooth muscle of prostate" EXACT [OBOL:automatic] +synonym: "smooth muscle of prostate gland" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of prostate" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of prostate gland" EXACT [OBOL:automatic] +synonym: "substantia muscularis prostatae" EXACT LATIN [FMA:74245, FMA:TA] +xref: BTO:0003159 +xref: EMAPA:35713 +xref: FMA:74245 +xref: MA:0001741 +is_a: UBERON:0001135 ! smooth muscle tissue +is_a: UBERON:0008715 ! muscle tissue of prostate +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0002367 ! prostate gland + +[Term] +id: UBERON:0004245 +name: oviduct smooth muscle +def: "A portion of smooth muscle tissue that is part of a fallopian tube [Automatically generated definition]." [OBOL:automatic] +synonym: "fallopian tube involuntary muscle" EXACT [OBOL:automatic] +synonym: "fallopian tube non-striated muscle" EXACT [OBOL:automatic] +synonym: "fallopian tube smooth muscle" EXACT [OBOL:automatic] +synonym: "fallopian tube smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "involuntary muscle of fallopian tube" EXACT [OBOL:automatic] +synonym: "non-striated muscle of fallopian tube" EXACT [OBOL:automatic] +synonym: "smooth muscle of fallopian tube" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of fallopian tube" EXACT [OBOL:automatic] +xref: EMAPA:29046 +xref: MA:0001721 +is_a: UBERON:0001135 ! smooth muscle tissue +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0003889 ! fallopian tube +relationship: part_of UBERON:0003889 ! fallopian tube + +[Term] +id: UBERON:0004246 +name: outflow tract smooth muscle +def: "A portion of smooth muscle tissue that is part of a outflow tract [Automatically generated definition]." [OBOL:automatic] +synonym: "involuntary muscle of outflow tract" EXACT [OBOL:automatic] +synonym: "non-striated muscle of outflow tract" EXACT [OBOL:automatic] +synonym: "outflow tract involuntary muscle" EXACT [OBOL:automatic] +synonym: "outflow tract non-striated muscle" EXACT [OBOL:automatic] +synonym: "outflow tract smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "smooth muscle of outflow tract" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of outflow tract" EXACT [OBOL:automatic] +xref: EMAPA:37708 {source="MA:th"} +xref: MA:0000492 +is_a: UBERON:0001135 ! smooth muscle tissue +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0004145 ! outflow tract +relationship: part_of UBERON:0004145 ! outflow tract + +[Term] +id: UBERON:0004247 +name: bone of dorsum +def: "A bone that is part of the dorsal region of an animal." [http://orcid.org/0000-0002-6601-2165] +subset: grouping_class +synonym: "back bone" RELATED [MA:0000494] +synonym: "bone of back" RELATED [OBOL:automatic] +synonym: "dorsal region bone" RELATED [http://orcid.org/0000-0002-6601-2165] +xref: EMAPA:37248 {source="MA:th"} +xref: MA:0000494 +is_a: UBERON:0001474 ! bone element +is_a: UBERON:0005174 ! dorsal region element +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0001137 ! dorsum + +[Term] +id: UBERON:0004248 +name: pedal digit bone +def: "A bone that is part of a hindlimb digit. Typically phalanges but may include sesamoids." [https://orcid.org/0000-0002-6601-2165] +synonym: "bone of digit of foot" EXACT [OBOL:automatic] +synonym: "digit of foot bone" EXACT [OBOL:automatic] +synonym: "digital bone of foot" EXACT [] +synonym: "digital bone of pes" EXACT [] +synonym: "digitus pedis bone" EXACT [OBOL:automatic] +synonym: "digitus pedis bone organ" EXACT [OBOL:automatic] +synonym: "foot digit bone" EXACT [MA:0000646] +synonym: "foot digit bone" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit bone organ" EXACT [OBOL:automatic] +synonym: "hind limb digit bone" EXACT [OBOL:accepted] +synonym: "toe bone" EXACT [OBOL:automatic] +synonym: "toe bone organ" EXACT [OBOL:automatic] +xref: EMAPA:37309 {source="MA:th"} +xref: MA:0000646 +is_a: UBERON:0012359 ! pedal digitopodium bone +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0001466 ! pedal digit +relationship: part_of UBERON:0001466 ! pedal digit +relationship: part_of UBERON:5101466 ! pedal digit digitopodial skeleton + +[Term] +id: UBERON:0004249 +name: manual digit bone +def: "A bone that is part of a forelimb digit. Typically phalanges but may include sesamoids." [https://orcid.org/0000-0002-6601-2165] +synonym: "digital bone of hand" EXACT [] +synonym: "digital bone of manus" EXACT [] +synonym: "finger bone" EXACT [OBOL:automatic] +synonym: "fore limb digit bone" EXACT [OBOL:accepted] +synonym: "hand digit bone" EXACT [MA:0000622] +synonym: "hand digit bone" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +xref: EMAPA:37305 {source="MA:th"} +xref: MA:0000622 +is_a: UBERON:0012358 ! manual digitopodium bone +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0002389 ! manual digit +relationship: part_of UBERON:0002389 ! manual digit +relationship: part_of UBERON:5102389 ! manual digit digitopodial skeleton + +[Term] +id: UBERON:0004250 +name: upper arm bone +def: "A bone that is part of a forelimb stylopod [Automatically generated definition]." [https://sourceforge.net/tracker/index.php?func=detail&aid=3586533&group_id=76834&atid=1205376, OBOL:automatic] +comment: May be merged into humerus. See: https://sourceforge.net/tracker/index.php?func=detail&aid=3586533&group_id=76834&atid=1205376 +synonym: "humerus" NARROW [https://sourceforge.net/tracker/index.php?func=detail&aid=3586533&group_id=76834&atid=1205376] +xref: EMAPA:35892 +xref: MA:0000604 +is_a: UBERON:0003460 ! arm bone +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0003822 ! forelimb stylopod +relationship: part_of UBERON:0003822 ! forelimb stylopod + +[Term] +id: UBERON:0004251 +name: hindlimb zeugopod bone +def: "A bone that is part of a lower leg [Automatically generated definition]." [OBOL:automatic] +synonym: "bone of hind limb middle limb segment" EXACT [OBOL:automatic] +synonym: "bone of hind limb zeugopod" EXACT [OBOL:automatic] +synonym: "bone of hindlimb middle limb segment" EXACT [OBOL:automatic] +synonym: "bone of hindlimb zeugopod" EXACT [OBOL:automatic] +synonym: "bone of inferior member middle limb segment" EXACT [OBOL:automatic] +synonym: "bone of inferior member zeugopod" EXACT [OBOL:automatic] +synonym: "bone of intermediate segment of free lower limb" EXACT [OBOL:automatic] +synonym: "bone of lower extremity middle limb segment" EXACT [OBOL:automatic] +synonym: "bone of lower extremity zeugopod" EXACT [OBOL:automatic] +synonym: "bone of lower leg" EXACT [OBOL:automatic] +synonym: "bone of middle limb segment of hind limb" EXACT [OBOL:automatic] +synonym: "bone of middle limb segment of hindlimb" EXACT [OBOL:automatic] +synonym: "bone of middle limb segment of inferior member" EXACT [OBOL:automatic] +synonym: "bone of middle limb segment of lower extremity" EXACT [OBOL:automatic] +synonym: "bone of zeugopod of hind limb" EXACT [OBOL:automatic] +synonym: "bone of zeugopod of hindlimb" EXACT [OBOL:automatic] +synonym: "bone of zeugopod of inferior member" EXACT [OBOL:automatic] +synonym: "bone of zeugopod of leg" EXACT [OBOL:automatic] +synonym: "bone of zeugopod of lower extremity" EXACT [OBOL:automatic] +synonym: "bone organ of hind limb middle limb segment" EXACT [OBOL:automatic] +synonym: "bone organ of hind limb zeugopod" EXACT [OBOL:automatic] +synonym: "bone organ of hindlimb middle limb segment" EXACT [OBOL:automatic] +synonym: "bone organ of hindlimb zeugopod" EXACT [OBOL:automatic] +synonym: "bone organ of inferior member middle limb segment" EXACT [OBOL:automatic] +synonym: "bone organ of inferior member zeugopod" EXACT [OBOL:automatic] +synonym: "bone organ of intermediate segment of free lower limb" EXACT [OBOL:automatic] +synonym: "bone organ of lower extremity middle limb segment" EXACT [OBOL:automatic] +synonym: "bone organ of lower extremity zeugopod" EXACT [OBOL:automatic] +synonym: "bone organ of lower leg" EXACT [OBOL:automatic] +synonym: "bone organ of middle limb segment of hind limb" EXACT [OBOL:automatic] +synonym: "bone organ of middle limb segment of hindlimb" EXACT [OBOL:automatic] +synonym: "bone organ of middle limb segment of inferior member" EXACT [OBOL:automatic] +synonym: "bone organ of middle limb segment of lower extremity" EXACT [OBOL:automatic] +synonym: "bone organ of zeugopod of hind limb" EXACT [OBOL:automatic] +synonym: "bone organ of zeugopod of hindlimb" EXACT [OBOL:automatic] +synonym: "bone organ of zeugopod of inferior member" EXACT [OBOL:automatic] +synonym: "bone organ of zeugopod of leg" EXACT [OBOL:automatic] +synonym: "bone organ of zeugopod of lower extremity" EXACT [OBOL:automatic] +synonym: "hind limb middle limb segment bone" EXACT [OBOL:automatic] +synonym: "hind limb middle limb segment bone organ" EXACT [OBOL:automatic] +synonym: "hind limb zeugopod bone" EXACT [OBOL:automatic] +synonym: "hind limb zeugopod bone organ" EXACT [OBOL:automatic] +synonym: "hindlimb middle limb segment bone" EXACT [OBOL:automatic] +synonym: "hindlimb middle limb segment bone organ" EXACT [OBOL:automatic] +synonym: "hindlimb zeugopod bone" EXACT [OBOL:automatic] +synonym: "hindlimb zeugopod bone organ" EXACT [OBOL:automatic] +synonym: "inferior member middle limb segment bone" EXACT [OBOL:automatic] +synonym: "inferior member middle limb segment bone organ" EXACT [OBOL:automatic] +synonym: "inferior member zeugopod bone" EXACT [OBOL:automatic] +synonym: "inferior member zeugopod bone organ" EXACT [OBOL:automatic] +synonym: "intermediate segment of free lower limb bone" EXACT [OBOL:automatic] +synonym: "intermediate segment of free lower limb bone organ" EXACT [OBOL:automatic] +synonym: "lower extremity middle limb segment bone" EXACT [OBOL:automatic] +synonym: "lower extremity middle limb segment bone organ" EXACT [OBOL:automatic] +synonym: "lower extremity zeugopod bone" EXACT [OBOL:automatic] +synonym: "lower extremity zeugopod bone organ" EXACT [OBOL:automatic] +synonym: "lower leg bone" EXACT [MA:0000676] +synonym: "middle limb segment of hind limb bone" EXACT [OBOL:automatic] +synonym: "middle limb segment of hind limb bone organ" EXACT [OBOL:automatic] +synonym: "middle limb segment of hindlimb bone" EXACT [OBOL:automatic] +synonym: "middle limb segment of hindlimb bone organ" EXACT [OBOL:automatic] +synonym: "middle limb segment of inferior member bone" EXACT [OBOL:automatic] +synonym: "middle limb segment of inferior member bone organ" EXACT [OBOL:automatic] +synonym: "middle limb segment of lower extremity bone" EXACT [OBOL:automatic] +synonym: "middle limb segment of lower extremity bone organ" EXACT [OBOL:automatic] +synonym: "zeugopod of hind limb bone" EXACT [OBOL:automatic] +synonym: "zeugopod of hind limb bone organ" EXACT [OBOL:automatic] +synonym: "zeugopod of hindlimb bone" EXACT [OBOL:automatic] +synonym: "zeugopod of hindlimb bone organ" EXACT [OBOL:automatic] +synonym: "zeugopod of inferior member bone" EXACT [OBOL:automatic] +synonym: "zeugopod of inferior member bone organ" EXACT [OBOL:automatic] +synonym: "zeugopod of leg bone" EXACT [OBOL:automatic] +synonym: "zeugopod of leg bone organ" EXACT [OBOL:automatic] +synonym: "zeugopod of lower extremity bone" EXACT [OBOL:automatic] +synonym: "zeugopod of lower extremity bone organ" EXACT [OBOL:automatic] +xref: EMAPA:35519 +xref: MA:0000676 +is_a: UBERON:0005893 ! leg bone +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod +relationship: part_of UBERON:0003823 ! hindlimb zeugopod + +[Term] +id: UBERON:0004252 +name: hindlimb stylopod muscle +alt_id: UBERON:0000374 +def: "Any muscle organ that is part of a hindlimb stylopod (upper leg)[Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "muscle of thigh" EXACT [FMA:22470] +synonym: "thigh muscle" EXACT [FMA:22470] +synonym: "upper leg muscle" EXACT [MA:0000684] +xref: BTO:0001367 +xref: EMAPA:19144 +xref: FMA:22470 +xref: http://www.snomedbrowser.com/Codes/Details/245013005 +xref: MA:0000684 +is_a: UBERON:0001383 ! muscle of leg +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0000376 ! hindlimb stylopod +relationship: part_of UBERON:0004463 {source="prolog"} ! musculature of hindlimb stylopod + +[Term] +id: UBERON:0004253 +name: skin muscle +alt_id: UBERON:0015797 +def: "Any muscle organ that is part of a skin of body [Automatically generated definition]." [OBOL:automatic] +synonym: "integumental system muscle" EXACT [MA:0003139] +synonym: "muscle of integumental system" EXACT [EMAPA:18187] +synonym: "muscle organ of skin" EXACT [OBOL:automatic] +synonym: "skin muscle organ" EXACT [OBOL:automatic] +xref: EMAPA:18187 +xref: EMAPA:35776 +xref: MA:0002710 +xref: MA:0003139 +is_a: UBERON:0001630 ! muscle organ +intersection_of: UBERON:0001630 ! muscle organ +intersection_of: part_of UBERON:0002416 ! integumental system +relationship: located_in UBERON:0002097 ! skin of body +relationship: part_of UBERON:0002416 ! integumental system + +[Term] +id: UBERON:0004254 +name: forelimb zeugopod muscle +def: "Any muscle organ that is part of a forelimb zeugopod (lower arm)[Automatically generated definition]." [OBOL:automatic] +synonym: "forearm muscle" EXACT [FMA:37371] +synonym: "lower arm muscle" EXACT [MA:0000600] +synonym: "muscle of forearm" EXACT [FMA:37371] +synonym: "wing zeugopod muscle" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +xref: EMAPA:32622 +xref: FMA:37371 +xref: http://www.snomedbrowser.com/Codes/Details/181631004 +xref: MA:0000600 +is_a: UBERON:0001499 ! muscle of arm +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0002386 ! forelimb zeugopod +relationship: part_of UBERON:0004487 {source="prolog"} ! musculature of forelimb zeugopod + +[Term] +id: UBERON:0004255 +name: forelimb stylopod muscle +def: "Any muscle organ that is part of a forelimb stylopod (upper arm)[Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "muscle of arm" RELATED INCONSISTENT [FMA:37370] +synonym: "muscle of upper arm" EXACT [MA:0000606] +synonym: "skeletal muscle of upper arm" RELATED [EMAPA:19107] +synonym: "upper arm muscle" EXACT [MA:0000606] +synonym: "wing stylopod muscle" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +xref: EMAPA:19107 +xref: FMA:37370 +xref: http://www.snomedbrowser.com/Codes/Details/244979005 +xref: MA:0000606 +is_a: UBERON:0001499 ! muscle of arm +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0003822 ! forelimb stylopod +relationship: part_of UBERON:0014791 {source="prolog"} ! musculature of forelimb stylopod + +[Term] +id: UBERON:0004256 +name: hindlimb zeugopod muscle +def: "Any muscle organ that is part of a hindlimb zeugopod (lower leg) [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "calf muscle" RELATED [OBOL:automatic] +synonym: "lower leg muscle" EXACT [MA:0000678] +synonym: "muscle of leg" RELATED INCONSISTENT [FMA:22471] +xref: EMAPA:19318 +xref: FMA:22471 +xref: http://www.snomedbrowser.com/Codes/Details/265806001 +xref: MA:0000678 +is_a: UBERON:0001383 ! muscle of leg +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod +relationship: part_of UBERON:0006067 {source="prolog"} ! musculature of hindlimb zeugopod + +[Term] +id: UBERON:0004257 +name: upper leg blood vessel +def: "A blood vessel that is part of a hindlimb stylopod [Automatically generated definition]." [OBOL:automatic] +synonym: "blood vessel of stylopod of hind limb" EXACT [OBOL:automatic] +synonym: "blood vessel of stylopod of hindlimb" EXACT [OBOL:automatic] +synonym: "blood vessel of thigh" EXACT [OBOL:automatic] +synonym: "blood vessel of upper leg" EXACT [OBOL:automatic] +synonym: "hind limb stylopod blood vessel" EXACT [OBOL:automatic] +synonym: "hindlimb stylopod blood vessel" EXACT [OBOL:automatic] +synonym: "thigh blood vessel" EXACT [OBOL:automatic] +xref: EMAPA:37299 {source="MA:th"} +xref: MA:0000681 +is_a: UBERON:0003503 ! leg blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0000376 ! hindlimb stylopod +relationship: part_of UBERON:0000376 ! hindlimb stylopod + +[Term] +id: UBERON:0004258 +name: back blood vessel +def: "A blood vessel that is part of a back [Automatically generated definition]." [OBOL:automatic] +synonym: "blood vessel of back" EXACT [OBOL:automatic] +xref: EMAPA:37243 {source="MA:th"} +xref: MA:0000493 +is_a: UBERON:0001981 ! blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0001137 ! dorsum +relationship: part_of UBERON:0001137 ! dorsum + +[Term] +id: UBERON:0004259 +name: lower arm blood vessel +def: "A blood vessel that is part of a lower arm [Automatically generated definition]." [OBOL:automatic] +synonym: "forelimb zeugopod blood vessel" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: EMAPA:37295 {source="MA:th"} +xref: MA:0000597 +is_a: UBERON:0003507 ! arm blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0002386 ! forelimb zeugopod +relationship: part_of UBERON:0002386 ! forelimb zeugopod + +[Term] +id: UBERON:0004260 +name: upper arm blood vessel +def: "A blood vessel that is part of a forelimb stylopod [Automatically generated definition]." [OBOL:automatic] +synonym: "forelimb stylopod blood vessel" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: EMAPA:37294 {source="MA:th"} +xref: MA:0000603 +is_a: UBERON:0003507 ! arm blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0003822 ! forelimb stylopod +relationship: part_of UBERON:0003822 ! forelimb stylopod + +[Term] +id: UBERON:0004261 +name: lower leg blood vessel +def: "A blood vessel that is part of a lower leg [Automatically generated definition]." [OBOL:automatic] +synonym: "hindlimb zeugopod blood vessel" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: EMAPA:37300 {source="MA:th"} +xref: MA:0000675 +is_a: UBERON:0003503 ! leg blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod +relationship: part_of UBERON:0003823 ! hindlimb zeugopod + +[Term] +id: UBERON:0004262 +name: upper leg skin +def: "A zone of skin that is part of a hindlimb stylopod [Automatically generated definition]." [OBOL:automatic] +synonym: "hind limb stylopod skin" EXACT [OBOL:automatic] +synonym: "hindlimb stylopod skin" EXACT [OBOL:automatic] +synonym: "skin of thigh" RELATED [OBOL:automatic] +synonym: "skin of upper leg" EXACT [OBOL:automatic] +synonym: "thigh skin" RELATED [OBOL:automatic] +xref: EMAPA:18159 +xref: FMA:37790 +xref: http://www.snomedbrowser.com/Codes/Details/181547006 +xref: MA:0000686 +is_a: UBERON:0001511 ! skin of leg +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0000376 ! hindlimb stylopod +relationship: part_of UBERON:0000376 ! hindlimb stylopod + +[Term] +id: UBERON:0004263 +name: upper arm skin +def: "A zone of skin that is part of a forelimb stylopod [Automatically generated definition]." [OBOL:automatic] +synonym: "arm stylopod skin" EXACT [OBOL:automatic] +synonym: "skin of arm stylopod" EXACT [OBOL:automatic] +synonym: "skin of upper arm" EXACT [OBOL:automatic] +xref: EMAPA:18062 +xref: FMA:37721 +xref: http://www.snomedbrowser.com/Codes/Details/181531009 +xref: MA:0000608 +is_a: UBERON:0002427 ! arm skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0003822 ! forelimb stylopod +relationship: part_of UBERON:0003822 ! forelimb stylopod + +[Term] +id: UBERON:0004264 +name: lower leg skin +def: "A zone of skin that is part of a lower leg [Automatically generated definition]." [OBOL:automatic] +synonym: "hind limb middle limb segment skin" EXACT [OBOL:automatic] +synonym: "hind limb zeugopod skin" EXACT [OBOL:automatic] +xref: EMAPA:18156 +xref: http://www.snomedbrowser.com/Codes/Details/244180007 +xref: MA:0000680 +is_a: UBERON:0001511 ! skin of leg +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod +relationship: part_of UBERON:0003823 ! hindlimb zeugopod + +[Term] +id: UBERON:0004265 +name: outflow tract myocardium +def: "A myocardium that is part of a outflow tract [Automatically generated definition]." [OBOL:automatic] +synonym: "cardiac muscle of outflow tract" EXACT [OBOL:automatic] +synonym: "heart muscle of outflow tract" EXACT [OBOL:automatic] +synonym: "heart myocardium of outflow tract" EXACT [OBOL:automatic] +synonym: "muscle of heart of outflow tract" EXACT [OBOL:automatic] +synonym: "myocardium of outflow tract" EXACT [OBOL:automatic] +synonym: "outflow tract cardiac muscle" EXACT [OBOL:automatic] +synonym: "outflow tract heart muscle" EXACT [OBOL:automatic] +synonym: "outflow tract heart myocardium" EXACT [OBOL:automatic] +synonym: "outflow tract muscle of heart" EXACT [OBOL:automatic] +xref: EHDAA2:0001358 +xref: EMAPA:35623 +xref: MA:0000489 +xref: VHOG:0000603 +is_a: UBERON:0002349 ! myocardium +intersection_of: UBERON:0002349 ! myocardium +intersection_of: part_of UBERON:0004145 ! outflow tract +relationship: part_of UBERON:0004145 ! outflow tract + +[Term] +id: UBERON:0004266 +name: upper leg connective tissue +def: "A portion of connective tissue that is part of a hindlimb stylopod [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:37325 {source="MA:th"} +xref: MA:0000683 +is_a: UBERON:0003569 ! leg connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0000376 ! hindlimb stylopod +relationship: develops_from UBERON:0005254 ! upper leg mesenchyme +relationship: part_of UBERON:0000376 ! hindlimb stylopod +relationship: transformation_of UBERON:0005254 ! upper leg mesenchyme + +[Term] +id: UBERON:0004267 +name: back connective tissue +def: "A portion of connective tissue that is part of a back [Automatically generated definition]." [OBOL:automatic] +synonym: "mesenchyne of back" RELATED [OBOL:automatic] +xref: EMAPA:37256 {source="MA:th"} +xref: MA:0000495 +is_a: UBERON:0002384 ! connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0001137 ! dorsum +relationship: part_of UBERON:0001137 ! dorsum + +[Term] +id: UBERON:0004268 +name: lower arm connective tissue +def: "A portion of connective tissue that is part of a lower arm [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:37319 {source="MA:th"} +xref: MA:0000599 +is_a: UBERON:0003573 ! arm connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0002386 ! forelimb zeugopod +relationship: develops_from UBERON:0003327 ! mesenchyme of forearm +relationship: part_of UBERON:0002386 ! forelimb zeugopod +relationship: transformation_of UBERON:0003327 ! mesenchyme of forearm + +[Term] +id: UBERON:0004269 +name: upper arm connective tissue +def: "A portion of connective tissue that is part of a forelimb stylopod [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:37317 {source="MA:th"} +xref: MA:0000605 +is_a: UBERON:0003573 ! arm connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0003822 ! forelimb stylopod +relationship: develops_from UBERON:0005258 ! upper arm mesenchyme +relationship: part_of UBERON:0003822 ! forelimb stylopod +relationship: transformation_of UBERON:0005258 ! upper arm mesenchyme + +[Term] +id: UBERON:0004270 +name: lower leg connective tissue +def: "A portion of connective tissue that is part of a lower leg [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:37327 {source="MA:th"} +xref: MA:0000677 +is_a: UBERON:0003569 ! leg connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod +relationship: develops_from UBERON:0005259 ! lower leg mesenchyme +relationship: part_of UBERON:0003823 ! hindlimb zeugopod +relationship: transformation_of UBERON:0005259 ! lower leg mesenchyme + +[Term] +id: UBERON:0004271 +name: outflow tract pericardium +def: "A pericardium that is part of a outflow tract [Automatically generated definition]." [OBOL:automatic] +synonym: "pericardium of outflow tract" EXACT [OBOL:automatic] +xref: EMAPA:37707 {source="MA:th"} +xref: MA:0000491 +is_a: UBERON:0002407 ! pericardium +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0002407 ! pericardium +intersection_of: part_of UBERON:0004145 ! outflow tract +relationship: part_of UBERON:0004145 ! outflow tract + +[Term] +id: UBERON:0004273 +name: cartilaginous joint suture +def: "A cranial suture that is part of a cartilaginous joint [Automatically generated definition]." [OBOL:automatic] +synonym: "articulatio cartilaginea cranial suture" EXACT [OBOL:automatic] +synonym: "articulatio cartilaginea cranial sutures" EXACT [OBOL:automatic] +synonym: "articulatio cartilaginea cranial sutures set" EXACT [OBOL:automatic] +synonym: "articulatio cartilaginea cranium suture" EXACT [OBOL:automatic] +synonym: "articulatio cartilaginea suture of cranium" EXACT [OBOL:automatic] +synonym: "cartilaginous joint cranial suture" EXACT [OBOL:automatic] +synonym: "cartilaginous joint cranial sutures" EXACT [OBOL:automatic] +synonym: "cartilaginous joint cranial sutures set" EXACT [OBOL:automatic] +synonym: "cartilaginous joint cranium suture" EXACT [OBOL:automatic] +synonym: "cartilaginous joint suture of cranium" EXACT [OBOL:automatic] +synonym: "cranial suture of articulatio cartilaginea" EXACT [OBOL:automatic] +synonym: "cranial suture of cartilaginous joint" EXACT [OBOL:automatic] +synonym: "cranial sutures of articulatio cartilaginea" EXACT [OBOL:automatic] +synonym: "cranial sutures of cartilaginous joint" EXACT [OBOL:automatic] +synonym: "cranial sutures set of articulatio cartilaginea" EXACT [OBOL:automatic] +synonym: "cranial sutures set of cartilaginous joint" EXACT [OBOL:automatic] +synonym: "cranium suture of articulatio cartilaginea" EXACT [OBOL:automatic] +synonym: "cranium suture of cartilaginous joint" EXACT [OBOL:automatic] +synonym: "suture of cranium of articulatio cartilaginea" EXACT [OBOL:automatic] +synonym: "suture of cranium of cartilaginous joint" EXACT [OBOL:automatic] +xref: EMAPA:37463 {source="MA:th"} +xref: MA:0001498 +is_a: UBERON:0003685 ! cranial suture +intersection_of: UBERON:0003685 ! cranial suture +intersection_of: part_of UBERON:0002213 ! cartilaginous joint +relationship: part_of UBERON:0002213 ! cartilaginous joint + +[Term] +id: UBERON:0004274 +name: lateral ventricle choroid plexus epithelium +def: "A choroid plexus epithelium that is part of a lateral ventricle [Automatically generated definition]." [OBOL:automatic] +synonym: "chorioid plexus of cerebral hemisphere epithelial tissue of lateral ventricle" EXACT [OBOL:automatic] +synonym: "chorioid plexus of cerebral hemisphere epithelium of lateral ventricle" EXACT [OBOL:automatic] +synonym: "choroid plexus epithelial tissue of lateral ventricle" EXACT [OBOL:automatic] +synonym: "choroid plexus epithelium of lateral ventricle" EXACT [OBOL:automatic] +synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere of lateral ventricle" EXACT [OBOL:automatic] +synonym: "epithelial tissue of choroid plexus of lateral ventricle" EXACT [OBOL:automatic] +synonym: "epithelium of chorioid plexus of cerebral hemisphere of lateral ventricle" EXACT [OBOL:automatic] +synonym: "epithelium of choroid plexus of lateral ventricle" EXACT [OBOL:automatic] +synonym: "lateral ventricle chorioid plexus of cerebral hemisphere epithelial tissue" EXACT [OBOL:automatic] +synonym: "lateral ventricle chorioid plexus of cerebral hemisphere epithelium" EXACT [OBOL:automatic] +synonym: "lateral ventricle choroid plexus epithelial tissue" EXACT [OBOL:automatic] +synonym: "lateral ventricle epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] +synonym: "lateral ventricle epithelial tissue of choroid plexus" EXACT [OBOL:automatic] +synonym: "lateral ventricle epithelium of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] +synonym: "lateral ventricle epithelium of choroid plexus" EXACT [OBOL:automatic] +xref: EHDAA2:0004450 +xref: FMA:242815 +xref: http://linkedlifedata.com/resource/umls/id/C1711323 +xref: MA:0000962 +xref: NCIT:C49248 +xref: UMLS:C1711323 {source="ncithesaurus:Choroid_Plexus_Epithelium_of_the_Lateral_Ventricle"} +is_a: UBERON:0003911 ! choroid plexus epithelium +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002307 ! choroid plexus of lateral ventricle +relationship: part_of UBERON:0002307 ! choroid plexus of lateral ventricle + +[Term] +id: UBERON:0004275 +name: third ventricle choroid plexus epithelium +def: "A choroid plexus epithelium that is part of a third ventricle [Automatically generated definition]." [OBOL:automatic] +synonym: "chorioid plexus of cerebral hemisphere epithelial tissue of third ventricle" EXACT [OBOL:automatic] +synonym: "chorioid plexus of cerebral hemisphere epithelium of third ventricle" EXACT [OBOL:automatic] +synonym: "choroid plexus epithelial tissue of third ventricle" EXACT [OBOL:automatic] +synonym: "choroid plexus epithelium of third ventricle" EXACT [OBOL:automatic] +synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere of third ventricle" EXACT [OBOL:automatic] +synonym: "epithelial tissue of choroid plexus of third ventricle" EXACT [OBOL:automatic] +synonym: "epithelium of chorioid plexus of cerebral hemisphere of third ventricle" EXACT [OBOL:automatic] +synonym: "epithelium of choroid plexus of third ventricle" EXACT [OBOL:automatic] +synonym: "third ventricle chorioid plexus of cerebral hemisphere epithelial tissue" EXACT [OBOL:automatic] +synonym: "third ventricle chorioid plexus of cerebral hemisphere epithelium" EXACT [OBOL:automatic] +synonym: "third ventricle choroid plexus epithelial tissue" EXACT [OBOL:automatic] +synonym: "third ventricle epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] +synonym: "third ventricle epithelial tissue of choroid plexus" EXACT [OBOL:automatic] +synonym: "third ventricle epithelium of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] +synonym: "third ventricle epithelium of choroid plexus" EXACT [OBOL:automatic] +xref: EMAPA:37055 {source="MA:th"} +xref: FMA:242821 +xref: MA:0000880 +is_a: UBERON:0003911 ! choroid plexus epithelium +intersection_of: UBERON:0003911 ! choroid plexus epithelium +intersection_of: part_of UBERON:0002286 ! third ventricle +relationship: part_of UBERON:0002288 ! choroid plexus of third ventricle + +[Term] +id: UBERON:0004276 +name: fourth ventricle choroid plexus epithelium +def: "A choroid plexus epithelium that is part of a fourth ventricle [Automatically generated definition]." [OBOL:automatic] +synonym: "chorioid plexus of cerebral hemisphere epithelial tissue of fourth ventricle" EXACT [OBOL:automatic] +synonym: "chorioid plexus of cerebral hemisphere epithelium of fourth ventricle" EXACT [OBOL:automatic] +synonym: "choroid plexus epithelial tissue of fourth ventricle" EXACT [OBOL:automatic] +synonym: "choroid plexus epithelium of fourth ventricle" EXACT [OBOL:automatic] +synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere of fourth ventricle" EXACT [OBOL:automatic] +synonym: "epithelial tissue of choroid plexus of fourth ventricle" EXACT [OBOL:automatic] +synonym: "epithelium of chorioid plexus of cerebral hemisphere of fourth ventricle" EXACT [OBOL:automatic] +synonym: "epithelium of choroid plexus of fourth ventricle" EXACT [OBOL:automatic] +synonym: "fourth ventricle chorioid plexus of cerebral hemisphere epithelial tissue" EXACT [OBOL:automatic] +synonym: "fourth ventricle chorioid plexus of cerebral hemisphere epithelium" EXACT [OBOL:automatic] +synonym: "fourth ventricle choroid plexus epithelial tissue" EXACT [OBOL:automatic] +synonym: "fourth ventricle epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] +synonym: "fourth ventricle epithelial tissue of choroid plexus" EXACT [OBOL:automatic] +synonym: "fourth ventricle epithelium of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] +synonym: "fourth ventricle epithelium of choroid plexus" EXACT [OBOL:automatic] +xref: FMA:242823 +xref: http://linkedlifedata.com/resource/umls/id/C1707392 +xref: MA:0000984 +xref: NCIT:C49230 +xref: UMLS:C1707392 {source="ncithesaurus:Choroid_Plexus_Epithelium_of_the_Fourth_Ventricle"} +is_a: UBERON:0003911 ! choroid plexus epithelium +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0003911 ! choroid plexus epithelium +intersection_of: part_of UBERON:0002422 ! fourth ventricle +relationship: part_of UBERON:0002290 ! choroid plexus of fourth ventricle + +[Term] +id: UBERON:0004277 +name: eye muscle +def: "A muscle that is part of the eye region." [OBOL:automatic] +subset: pheno_slim +xref: AAO:0000156 +xref: EMAPA:35335 +xref: MA:0000271 +xref: OpenCyc:Mx8Ngx4rwKSh9pwpEbGdrcN5Y29ycB4rvViTvpwpEbGdrcN5Y29ycB4rvYA8cJwpEbGdrcN5Y29ycA +is_a: UBERON:0001630 ! muscle organ +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0001630 ! muscle organ +intersection_of: part_of UBERON:0000019 ! camera-type eye +relationship: contributes_to_morphology_of UBERON:0000019 ! camera-type eye +relationship: part_of UBERON:0000019 {source="MA"} ! camera-type eye + +[Term] +id: UBERON:0004288 +name: skeleton +def: "Anatomical cluster that consists of all the skeletal elements (eg., bone, cartilage, and teeth) of the body." [VSAO:0000026] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "set of all bones" EXACT [] +synonym: "set of bones of body" EXACT [] +xref: AEO:0000168 +xref: EHDAA2:0001843 +xref: EHDAA:5047 +xref: EMAPA:17213 +xref: FMA:23875 +xref: GAID:177 +xref: galen:Skeleton +xref: http://en.wikipedia.org/wiki/Skeleton +xref: http://www.snomedbrowser.com/Codes/Details/361378004 +xref: MA:0003006 +xref: MAT:0000032 +xref: MESH:D012863 +xref: MIAA:0000032 +xref: OpenCyc:Mx4rvVi1rpwpEbGdrcN5Y29ycA +xref: VSAO:0000026 +xref: XAO:0004053 +is_a: UBERON:0034925 ! anatomical collection +disjoint_from: UBERON:0004770 ! articular system +relationship: has_member UBERON:0004765 ! skeletal element +relationship: part_of UBERON:0001434 ! skeletal system + +[Term] +id: UBERON:0004289 +name: radula +def: "An anatomical structure found in mollusks and used for feeding. It is a minutely toothed, chitinous ribbon. It is typically used for scraping or cutting food before the food enters the esophagus. The radula is unique to the molluscs, and is found in all classes of mollusks except for the bivalves." [http://en.wikipedia.org/wiki/Radula] +comment: The first bona fide radula dates to the Early Cambrian,[3] although trace fossils from the earlier Ediacaran have been suggested to have been made by the radula of the organism Kimberella.[WP] +xref: BTO:0001506 +xref: http://en.wikipedia.org/wiki/Radula +is_a: UBERON:0000062 ! organ + +[Term] +id: UBERON:0004290 +name: dermomyotome +def: "The bilaminar epithelium formed from the myotome and dermatome." [AEO:0000214] +synonym: "dermamyotome" RELATED [VHOG:0000676] +synonym: "dermomyotomes" RELATED PLURAL [VHOG:0000676] +xref: AAO:0010572 +xref: AEO:0000214 +xref: EHDAA2:0003259 +xref: EMAPA:31109 +xref: FMA:295654 +xref: http://linkedlifedata.com/resource/umls/id/C1511786 +xref: NCIT:C34140 +xref: TAO:0001513 +xref: UMLS:C1511786 {source="ncithesaurus:Dermomyotome"} +xref: VHOG:0000676 +xref: ZFA:0001513 +is_a: UBERON:0000486 {source="AEO"} ! multilaminar epithelium +is_a: UBERON:0016888 {source="AEO"} ! transitional anatomical structure +relationship: develops_from UBERON:0002329 {source="EHDAA2", source="ZFA"} ! somite + +[Term] +id: UBERON:0004291 +name: heart rudiment +def: "A cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the midline. The heart rudiment is the first structure of the heart tube." [GO:0003313] +synonym: "heart cone" EXACT [GO:0003313] +synonym: "rudimentary heart" EXACT [ZFA:0000115] +xref: TAO:0000115 +xref: ZFA:0000115 +is_a: UBERON:0012275 ! meso-epithelium +relationship: develops_from UBERON:0004139 ! cardiogenic plate + +[Term] +id: UBERON:0004292 +name: cardiac skeleton +def: "Dense connective tissue that separates the atria from the ventricles and provides physical support for the heart." [GO:0003204, http://en.wikipedia.org/wiki/Cardiac_skeleton] +synonym: "anulus fibrosus dexter cordis" RELATED LATIN [http://en.wikipedia.org/wiki/Cardiac_skeleton] +synonym: "anulus fibrosus sinister cordis" RELATED LATIN [http://en.wikipedia.org/wiki/Cardiac_skeleton] +synonym: "cardiac fibrous skeleton" EXACT [EMAPA:36645] +synonym: "fibrous skeleton of heart" EXACT [] +synonym: "heart fibrous skeleton" EXACT [GO:0003204] +synonym: "skeleton of heart" EXACT [FMA:9496] +synonym: "trigona fibrosa" RELATED LATIN [http://en.wikipedia.org/wiki/Cardiac_skeleton] +synonym: "trigonum fibrosum dextrum cordis" RELATED LATIN [http://en.wikipedia.org/wiki/Cardiac_skeleton] +synonym: "trigonum fibrosum sinistrum cordis" RELATED LATIN [http://en.wikipedia.org/wiki/Cardiac_skeleton] +xref: Cardiac:skeleton +xref: EMAPA:36645 +xref: FMA:9496 +is_a: UBERON:0003837 ! thoracic segment connective tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: adjacent_to UBERON:0002081 ! cardiac atrium +relationship: adjacent_to UBERON:0002082 ! cardiac ventricle +relationship: part_of UBERON:0000948 ! heart + +[Term] +id: UBERON:0004293 +name: parasympathetic nerve +def: "A nerve that is part of a parasympathetic nervous system [Automatically generated definition]." [OBOL:automatic] +synonym: "nerve of parasympathetic nervous system" EXACT [OBOL:automatic] +xref: EHDAA2:0001401 +xref: EMAPA:17271 +xref: http://www.snomedbrowser.com/Codes/Details/276146002 +xref: MA:0000224 +xref: VHOG:0000641 +is_a: UBERON:0001021 ! nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0000011 ! parasympathetic nervous system +relationship: extends_fibers_into UBERON:0001808 ! parasympathetic ganglion +relationship: has_developmental_contribution_from UBERON:0005428 {source="NCBIBook:NBK10065"} ! vagal neural crest +relationship: has_developmental_contribution_from UBERON:0010075 {source="NCBIBook:NBK10065"} ! sacral neural crest +relationship: part_of UBERON:0000011 ! parasympathetic nervous system + +[Term] +id: UBERON:0004294 +name: glomerular capillary endothelium +def: "An endothelium that is part of a glomerular capillary." [OBOL:automatic] +subset: pheno_slim +synonym: "renal glomerulus capillary endothelium" EXACT [OBOL:automatic] +xref: http://linkedlifedata.com/resource/umls/id/C0227647 +xref: http://www.snomedbrowser.com/Codes/Details/243993006 +xref: MA:0001658 +xref: NCIT:C32522 +xref: UMLS:C0227647 {source="ncithesaurus:Endothelium_of_the_Glomerular_Capillary"} +is_a: UBERON:0001915 ! endothelium of capillary +is_a: UBERON:0004189 ! glomerular endothelium +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0004212 ! glomerular capillary +relationship: contributes_to_morphology_of UBERON:0004212 ! glomerular capillary +relationship: part_of UBERON:0004212 ! glomerular capillary + +[Term] +id: UBERON:0004295 +name: sympathetic nerve trunk +def: "A nerve trunk that is part of a sympathetic nervous system [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "nerve trunk of sympathetic nervous system" EXACT [OBOL:automatic] +synonym: "nerve trunk of sympathetic part of autonomic division of nervous system" EXACT [OBOL:automatic] +synonym: "sympathetic nervous system nerve trunk" EXACT [OBOL:automatic] +xref: EHDAA2:0001970 +xref: EMAPA:35845 +xref: MA:0000227 +is_a: UBERON:0002464 ! nerve trunk +intersection_of: UBERON:0002464 ! nerve trunk +intersection_of: part_of UBERON:0000013 ! sympathetic nervous system +relationship: part_of UBERON:0000013 ! sympathetic nervous system + +[Term] +id: UBERON:0004296 +name: respiratory system lymphatic vessel smooth muscle +def: "A lymphatic vessel smooth muscle that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +synonym: "smooth muscle of lymph vessel of respiratory system" EXACT [OBOL:automatic] +xref: EMAPA:37582 {source="MA:th"} +xref: MA:0001826 +is_a: UBERON:0004225 ! respiratory system smooth muscle +is_a: UBERON:0004232 ! lymphatic vessel smooth muscle +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0003456 ! respiratory system lymphatic vessel +relationship: part_of UBERON:0003456 ! respiratory system lymphatic vessel + +[Term] +id: UBERON:0004297 +name: respiratory system blood vessel smooth muscle +def: "A blood vessel smooth muscle that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +synonym: "smooth muscle tissue of blood vessel of respiratory system" EXACT [OBOL:automatic] +xref: EMAPA:37573 {source="MA:th"} +xref: MA:0001806 +is_a: UBERON:0004225 ! respiratory system smooth muscle +is_a: UBERON:0004237 ! blood vessel smooth muscle +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0003504 ! respiratory system blood vessel +relationship: part_of UBERON:0003504 ! respiratory system blood vessel + +[Term] +id: UBERON:0004300 +name: distal phalanx +def: "Distal-most phalanx within a digit." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/120] +subset: pheno_slim +synonym: "phalanx distalis" EXACT [http://en.wikipedia.org/wiki/Distal_phalanges] +synonym: "phalanx distalis" RELATED LATIN [http://en.wikipedia.org/wiki/Distal_phalanges] +synonym: "terminal phalanx" EXACT [AAO:0010676] +synonym: "ungual phalanx" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=67679] +xref: AAO:0010676 +xref: Distal:phalanges +xref: EMAPA:35287 +xref: http://www.snomedbrowser.com/Codes/Details/299711006 +xref: MA:0002914 +is_a: UBERON:0003221 ! phalanx +intersection_of: UBERON:0003221 ! phalanx +intersection_of: proximally_connected_to UBERON:0004301 ! middle phalanx +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +relationship: part_of UBERON:0009551 ! distal segment of digit +relationship: proximally_connected_to UBERON:0004301 ! middle phalanx + +[Term] +id: UBERON:0004301 +name: middle phalanx +def: "A phalanx located between proximal and distal phalanges." [http://orcid.org/0000-0002-6601-2165] +synonym: "intermediate phalanx" EXACT [] +synonym: "medial phalanx" RELATED [] +synonym: "penultimate phalanx" RELATED [AAO:0010677] +synonym: "phalanx 2" RELATED [] +synonym: "phalanx II" RELATED [] +xref: AAO:0010677 +xref: EMAPA:35572 +xref: http://www.snomedbrowser.com/Codes/Details/299710007 +xref: Intermediate:phalanges +xref: MA:0002915 +is_a: UBERON:0003221 ! phalanx +intersection_of: UBERON:0003221 ! phalanx +intersection_of: distally_connected_to UBERON:0003221 ! phalanx +intersection_of: proximally_connected_to UBERON:0003221 ! phalanx +relationship: distally_connected_to UBERON:0004300 ! distal phalanx +relationship: proximally_connected_to UBERON:0004302 ! proximal phalanx + +[Term] +id: UBERON:0004302 +name: proximal phalanx +def: "Proximal-most phalanx within a digit." [http://orcid.org/0000-0002-6601-2165] +synonym: "phalanx 1" EXACT [] +synonym: "phalanx I" EXACT [] +synonym: "proximal-most phalanx" EXACT [AAO:0010680] +xref: AAO:0010680 +xref: EMAPA:35716 +xref: http://www.snomedbrowser.com/Codes/Details/299708005 +xref: MA:0002916 +xref: Proximal:phalanges +is_a: UBERON:0003221 ! phalanx +intersection_of: UBERON:0003221 ! phalanx +intersection_of: connected_to UBERON:0003821 ! metapodium bone +relationship: connected_to UBERON:0003821 ! metapodium bone + +[Term] +id: UBERON:0004311 +name: distal phalanx of manual digit 2 +def: "A distal phalanx that is part of a hand digit 2 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "2nd digit of hand distal phalanx" EXACT [OBOL:automatic] +synonym: "2nd finger distal phalanx" EXACT [OBOL:automatic] +synonym: "distal phalanx of 2nd digit of hand" EXACT [OBOL:automatic] +synonym: "distal phalanx of 2nd finger" EXACT [OBOL:automatic] +synonym: "distal phalanx of index finger" EXACT [FMA:23946] +synonym: "distal phalanx of manual digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "distal phalanx of second digit of hand" EXACT [FMA:23946] +synonym: "distal phalanx of second finger" EXACT [OBOL:automatic] +synonym: "hand digit 2 distal phalanx" EXACT [OBOL:automatic] +synonym: "second distal phalanx of hand" EXACT [FMA:23946] +synonym: "second finger distal phalanx" EXACT [OBOL:automatic] +xref: FMA:23946 +xref: http://www.snomedbrowser.com/Codes/Details/361784003 +is_a: UBERON:0003636 ! manual digit 2 phalanx +is_a: UBERON:0003865 ! distal phalanx of manus +is_a: UBERON:0014484 ! distal phalanx of digit 2 +intersection_of: UBERON:0004300 ! distal phalanx +intersection_of: part_of UBERON:0003622 ! manual digit 2 + +[Term] +id: UBERON:0004312 +name: distal phalanx of manual digit 3 +def: "A distal phalanx that is part of a hand digit 3 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "3rd digit of hand distal phalanx" EXACT [OBOL:automatic] +synonym: "3rd finger distal phalanx" EXACT [OBOL:automatic] +synonym: "distal phalanx of 3rd digit of hand" EXACT [OBOL:automatic] +synonym: "distal phalanx of 3rd finger" EXACT [OBOL:automatic] +synonym: "distal phalanx of manual digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "distal phalanx of middle finger" EXACT [FMA:23947] +synonym: "distal phalanx of third digit of hand" EXACT [FMA:23947] +synonym: "distal phalanx of third finger" EXACT [OBOL:automatic] +synonym: "equine 3rd phalanx of forelimb digit 3" EXACT [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] +synonym: "equine forelimb distal phalanx" EXACT [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] +synonym: "forelimb coffin bone" NARROW [NCBITaxon:9787] +synonym: "forelimb medial claw of artiodactyl" NARROW [NCBITaxon:91561] +synonym: "forelimb medial claw of ruminant hoof" NARROW [NCBITaxon:91561] +synonym: "forelimb medial ungual phalanx of artiodactyl" NARROW [NCBITaxon:91561] +synonym: "forelimb pedal bone" NARROW [NCBITaxon:9787] +synonym: "hand digit 3 distal phalanx" EXACT [OBOL:automatic] +synonym: "third distal phalanx of hand" EXACT [FMA:23947] +synonym: "third finger distal phalanx" EXACT [OBOL:automatic] +xref: FMA:23947 +xref: http://www.snomedbrowser.com/Codes/Details/361786001 +xref: http://www.snomedbrowser.com/Codes/Details/370674002 +is_a: UBERON:0003637 ! manual digit 3 phalanx +is_a: UBERON:0003865 ! distal phalanx of manus +is_a: UBERON:0014485 ! distal phalanx of digit 3 +intersection_of: UBERON:0004300 ! distal phalanx +intersection_of: part_of UBERON:0003623 ! manual digit 3 + +[Term] +id: UBERON:0004313 +name: distal phalanx of manual digit 4 +def: "A distal phalanx that is part of a hand digit 4 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "4th digit of hand distal phalanx" EXACT [OBOL:automatic] +synonym: "4th finger distal phalanx" EXACT [OBOL:automatic] +synonym: "distal phalanx of 4th digit of hand" EXACT [OBOL:automatic] +synonym: "distal phalanx of 4th finger" EXACT [OBOL:automatic] +synonym: "distal phalanx of fourth digit of hand" EXACT [FMA:23948] +synonym: "distal phalanx of fourth finger" EXACT [OBOL:automatic] +synonym: "distal phalanx of manual digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "distal phalanx of ring finger" EXACT [FMA:23948] +synonym: "fourth distal phalanx of hand" EXACT [FMA:23948] +synonym: "fourth finger distal phalanx" EXACT [OBOL:automatic] +synonym: "hand digit 4 distal phalanx" EXACT [OBOL:automatic] +xref: FMA:23948 +xref: http://www.snomedbrowser.com/Codes/Details/361788000 +is_a: UBERON:0003638 ! manual digit 4 phalanx +is_a: UBERON:0003865 ! distal phalanx of manus +is_a: UBERON:0014486 ! distal phalanx of digit 4 +intersection_of: UBERON:0004300 ! distal phalanx +intersection_of: part_of UBERON:0003624 ! manual digit 4 + +[Term] +id: UBERON:0004314 +name: distal phalanx of manual digit 5 +def: "A distal phalanx that is part of a hand digit 5 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "5th digit of hand distal phalanx" EXACT [OBOL:automatic] +synonym: "5th finger distal phalanx" EXACT [OBOL:automatic] +synonym: "distal phalanx of 5th digit of hand" EXACT [OBOL:automatic] +synonym: "distal phalanx of 5th finger" EXACT [OBOL:automatic] +synonym: "distal phalanx of fifth digit of hand" EXACT [FMA:23949] +synonym: "distal phalanx of fifth finger" EXACT [OBOL:automatic] +synonym: "distal phalanx of little finger" EXACT [FMA:23949] +synonym: "distal phalanx of manual digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "fifth distal phalanx of hand" EXACT [FMA:23949] +synonym: "fifth finger distal phalanx" EXACT [OBOL:automatic] +synonym: "hand digit 5 distal phalanx" EXACT [OBOL:automatic] +xref: FMA:23949 +xref: http://www.snomedbrowser.com/Codes/Details/361790004 +is_a: UBERON:0003639 ! manual digit 5 phalanx +is_a: UBERON:0003865 ! distal phalanx of manus +is_a: UBERON:0014487 ! distal phalanx of digit 5 +intersection_of: UBERON:0004300 ! distal phalanx +intersection_of: part_of UBERON:0003625 ! manual digit 5 + +[Term] +id: UBERON:0004315 +name: distal phalanx of pedal digit 1 +def: "A distal phalanx that is part of a foot digit 1 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "distal phalanx of big toe" EXACT [FMA:32627] +synonym: "distal phalanx of first digit of foot" EXACT [FMA:32627] +synonym: "distal phalanx of foot digit 1" EXACT [OBOL:automatic] +synonym: "distal phalanx of great toe" EXACT [FMA:32627] +synonym: "distal phalanx of hallux" EXACT [OBOL:automatic] +synonym: "distal phalanx of pedal digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "first distal phalanx of foot" EXACT [FMA:32627] +synonym: "foot digit 1 distal phalanx" EXACT [OBOL:automatic] +synonym: "hallux distal phalanx" EXACT [OBOL:automatic] +xref: FMA:32627 +xref: http://www.snomedbrowser.com/Codes/Details/361799003 +is_a: UBERON:0003640 ! pedal digit 1 phalanx +is_a: UBERON:0003867 ! distal phalanx of pes +is_a: UBERON:0014483 ! distal phalanx of digit 1 +intersection_of: UBERON:0004300 ! distal phalanx +intersection_of: part_of UBERON:0003631 ! pedal digit 1 + +[Term] +id: UBERON:0004316 +name: distal phalanx of pedal digit 2 +def: "A distal phalanx that is part of a foot digit 2 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "2nd toe distal phalanx" EXACT [OBOL:automatic] +synonym: "distal phalanx of 2nd toe" EXACT [OBOL:automatic] +synonym: "distal phalanx of foot digit 2" EXACT [OBOL:automatic] +synonym: "distal phalanx of pedal digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "distal phalanx of second digit of foot" EXACT [FMA:32628] +synonym: "distal phalanx of second toe" EXACT [FMA:32628] +synonym: "distal phalanx of the 2nd toe" EXACT [OBOL:automatic] +synonym: "foot digit 2 distal phalanx" EXACT [OBOL:automatic] +synonym: "second distal phalanx of foot" EXACT [FMA:32628] +xref: FMA:32628 +xref: http://www.snomedbrowser.com/Codes/Details/361801000 +is_a: UBERON:0003641 ! pedal digit 2 phalanx +is_a: UBERON:0003867 ! distal phalanx of pes +is_a: UBERON:0014484 ! distal phalanx of digit 2 +intersection_of: UBERON:0004300 ! distal phalanx +intersection_of: part_of UBERON:0003632 ! pedal digit 2 + +[Term] +id: UBERON:0004317 +name: distal phalanx of pedal digit 3 +def: "A distal phalanx that is part of a foot digit 3 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "3rd toe distal phalanx" EXACT [OBOL:automatic] +synonym: "distal phalanx of 3rd toe" EXACT [OBOL:automatic] +synonym: "distal phalanx of foot digit 3" EXACT [OBOL:automatic] +synonym: "distal phalanx of pedal digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "distal phalanx of the 3rd toe" EXACT [OBOL:automatic] +synonym: "distal phalanx of third digit of foot" EXACT [FMA:32629] +synonym: "distal phalanx of third toe" EXACT [FMA:32629] +synonym: "equine 3rd phalanx of hindlimb digit 3" EXACT [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] +synonym: "equine hindlimb distal phalanx" EXACT [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] +synonym: "foot digit 3 distal phalanx" EXACT [OBOL:automatic] +synonym: "hindlimb coffin bone" NARROW [NCBITaxon:9787] +synonym: "hindlimb medial claw of artiodactyl" NARROW [NCBITaxon:91561] +synonym: "hindlimb medial claw of ruminant hoof" NARROW [NCBITaxon:91561] +synonym: "hindlimb medial ungual phalanx of artiodactyl" NARROW [NCBITaxon:91561] +synonym: "hindlimb pedal bone" NARROW [NCBITaxon:9787] +synonym: "third distal phalanx of foot" EXACT [FMA:32629] +xref: FMA:32629 +xref: http://www.snomedbrowser.com/Codes/Details/361803002 +xref: http://www.snomedbrowser.com/Codes/Details/370673008 +is_a: UBERON:0003642 ! pedal digit 3 phalanx +is_a: UBERON:0003867 ! distal phalanx of pes +is_a: UBERON:0014485 ! distal phalanx of digit 3 +intersection_of: UBERON:0004300 ! distal phalanx +intersection_of: part_of UBERON:0003633 ! pedal digit 3 + +[Term] +id: UBERON:0004318 +name: distal phalanx of pedal digit 4 +def: "A distal phalanx that is part of a foot digit 4 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "4th toe distal phalanx" EXACT [OBOL:automatic] +synonym: "distal phalanx of 4th toe" EXACT [OBOL:automatic] +synonym: "distal phalanx of foot digit 4" EXACT [OBOL:automatic] +synonym: "distal phalanx of fourth digit of foot" EXACT [FMA:32630] +synonym: "distal phalanx of fourth toe" EXACT [FMA:32630] +synonym: "distal phalanx of pedal digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "distal phalanx of the 4th toe" EXACT [OBOL:automatic] +synonym: "foot digit 4 distal phalanx" EXACT [OBOL:automatic] +synonym: "fourth distal phalanx of foot" EXACT [FMA:32630] +xref: FMA:32630 +xref: http://www.snomedbrowser.com/Codes/Details/361805009 +is_a: UBERON:0003862 ! pedal digit 4 phalanx +is_a: UBERON:0003867 ! distal phalanx of pes +is_a: UBERON:0014486 ! distal phalanx of digit 4 +intersection_of: UBERON:0004300 ! distal phalanx +intersection_of: part_of UBERON:0003634 ! pedal digit 4 + +[Term] +id: UBERON:0004319 +name: distal phalanx of pedal digit 5 +def: "A distal phalanx that is part of a foot digit 5 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "5th toe distal phalanx" EXACT [OBOL:automatic] +synonym: "distal phalanx of 5th toe" EXACT [OBOL:automatic] +synonym: "distal phalanx of fifth digit of foot" EXACT [FMA:32631] +synonym: "distal phalanx of fifth toe" EXACT [FMA:32631] +synonym: "distal phalanx of foot digit 5" EXACT [OBOL:automatic] +synonym: "distal phalanx of little toe" EXACT [FMA:32631] +synonym: "distal phalanx of pedal digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "distal phalanx of the 5th toe" EXACT [OBOL:automatic] +synonym: "fifth distal phalanx of foot" EXACT [FMA:32631] +synonym: "foot digit 5 distal phalanx" EXACT [OBOL:automatic] +xref: FMA:32631 +xref: http://www.snomedbrowser.com/Codes/Details/10770001 +xref: http://www.snomedbrowser.com/Codes/Details/244674003 +is_a: UBERON:0003863 ! pedal digit 5 phalanx +is_a: UBERON:0003867 ! distal phalanx of pes +is_a: UBERON:0014487 ! distal phalanx of digit 5 +intersection_of: UBERON:0004300 ! distal phalanx +intersection_of: part_of UBERON:0003635 ! pedal digit 5 + +[Term] +id: UBERON:0004320 +name: middle phalanx of manual digit 2 +def: "A middle phalanx that is part of a hand digit 2 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "2nd digit of hand intermediate phalanx" EXACT [OBOL:automatic] +synonym: "2nd digit of hand middle phalanx" EXACT [OBOL:automatic] +synonym: "2nd finger intermediate phalanx" EXACT [OBOL:automatic] +synonym: "2nd finger middle phalanx" EXACT [OBOL:automatic] +synonym: "hand digit 2 intermediate phalanx" EXACT [OBOL:automatic] +synonym: "hand digit 2 middle phalanx" EXACT [OBOL:automatic] +synonym: "intermediate phalanx of 2nd digit of hand" EXACT [OBOL:automatic] +synonym: "intermediate phalanx of 2nd finger" EXACT [OBOL:automatic] +synonym: "intermediate phalanx of hand digit 2" EXACT [OBOL:automatic] +synonym: "intermediate phalanx of second finger" EXACT [OBOL:automatic] +synonym: "middle phalanx of 2nd digit of hand" EXACT [OBOL:automatic] +synonym: "middle phalanx of 2nd finger" EXACT [OBOL:automatic] +synonym: "middle phalanx of index finger" EXACT [FMA:23933] +synonym: "middle phalanx of manual digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "middle phalanx of second digit of hand" EXACT [FMA:23933] +synonym: "middle phalanx of second finger" EXACT [OBOL:automatic] +synonym: "second finger intermediate phalanx" EXACT [OBOL:automatic] +synonym: "second finger middle phalanx" EXACT [OBOL:automatic] +synonym: "second middle phalanx of hand" EXACT [FMA:23933] +xref: FMA:23933 +xref: http://www.snomedbrowser.com/Codes/Details/263407002 +is_a: UBERON:0003636 ! manual digit 2 phalanx +is_a: UBERON:0003864 ! middle phalanx of manus +is_a: UBERON:0014488 ! middle phalanx of digit 2 +intersection_of: UBERON:0004301 ! middle phalanx +intersection_of: part_of UBERON:0003622 ! manual digit 2 + +[Term] +id: UBERON:0004321 +name: middle phalanx of manual digit 3 +def: "A middle phalanx that is part of a hand digit 3 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "3rd digit of hand intermediate phalanx" EXACT [OBOL:automatic] +synonym: "3rd digit of hand middle phalanx" EXACT [OBOL:automatic] +synonym: "3rd finger intermediate phalanx" EXACT [OBOL:automatic] +synonym: "3rd finger middle phalanx" EXACT [OBOL:automatic] +synonym: "forelimb digit III P2" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "forelimb short pastern bone" NARROW [http://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] +synonym: "hand digit 3 intermediate phalanx" EXACT [OBOL:automatic] +synonym: "hand digit 3 middle phalanx" EXACT [OBOL:automatic] +synonym: "intermediate phalanx of 3rd digit of hand" EXACT [OBOL:automatic] +synonym: "intermediate phalanx of 3rd finger" EXACT [OBOL:automatic] +synonym: "intermediate phalanx of hand digit 3" EXACT [OBOL:automatic] +synonym: "intermediate phalanx of third finger" EXACT [OBOL:automatic] +synonym: "middle phalanx of 3rd digit of hand" EXACT [OBOL:automatic] +synonym: "middle phalanx of 3rd finger" EXACT [OBOL:automatic] +synonym: "middle phalanx of manual digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "middle phalanx of middle finger" EXACT [OBOL:automatic] +synonym: "middle phalanx of third digit of hand" EXACT [FMA:23934] +synonym: "middle phalanx of third finger" EXACT [OBOL:automatic] +synonym: "third finger intermediate phalanx" EXACT [OBOL:automatic] +synonym: "third finger middle phalanx" EXACT [OBOL:automatic] +synonym: "third middle phalanx of hand" EXACT [FMA:23934] +xref: FMA:23934 +xref: http://www.snomedbrowser.com/Codes/Details/263408007 +xref: http://www.snomedbrowser.com/Codes/Details/370729003 +is_a: UBERON:0003637 ! manual digit 3 phalanx +is_a: UBERON:0003864 ! middle phalanx of manus +is_a: UBERON:0014489 ! middle phalanx of digit 3 +intersection_of: UBERON:0004301 ! middle phalanx +intersection_of: part_of UBERON:0003623 ! manual digit 3 + +[Term] +id: UBERON:0004322 +name: middle phalanx of manual digit 4 +def: "A middle phalanx that is part of a hand digit 4 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "4th digit of hand intermediate phalanx" EXACT [OBOL:automatic] +synonym: "4th digit of hand middle phalanx" EXACT [OBOL:automatic] +synonym: "4th finger intermediate phalanx" EXACT [OBOL:automatic] +synonym: "4th finger middle phalanx" EXACT [OBOL:automatic] +synonym: "fourth finger intermediate phalanx" EXACT [OBOL:automatic] +synonym: "fourth finger middle phalanx" EXACT [OBOL:automatic] +synonym: "fourth middle phalanx of hand" EXACT [FMA:23935] +synonym: "hand digit 4 intermediate phalanx" EXACT [OBOL:automatic] +synonym: "hand digit 4 middle phalanx" EXACT [OBOL:automatic] +synonym: "intermediate phalanx of 4th digit of hand" EXACT [OBOL:automatic] +synonym: "intermediate phalanx of 4th finger" EXACT [OBOL:automatic] +synonym: "intermediate phalanx of fourth finger" EXACT [OBOL:automatic] +synonym: "intermediate phalanx of hand digit 4" EXACT [OBOL:automatic] +synonym: "middle phalanx of 4th digit of hand" EXACT [OBOL:automatic] +synonym: "middle phalanx of 4th finger" EXACT [OBOL:automatic] +synonym: "middle phalanx of fourth digit of hand" EXACT [FMA:23935] +synonym: "middle phalanx of fourth finger" EXACT [OBOL:automatic] +synonym: "middle phalanx of manual digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "middle phalanx of ring finger" EXACT [OBOL:automatic] +xref: FMA:23935 +xref: http://www.snomedbrowser.com/Codes/Details/263409004 +is_a: UBERON:0003638 ! manual digit 4 phalanx +is_a: UBERON:0003864 ! middle phalanx of manus +is_a: UBERON:0014490 ! middle phalanx of digit 4 +intersection_of: UBERON:0004301 ! middle phalanx +intersection_of: part_of UBERON:0003624 ! manual digit 4 + +[Term] +id: UBERON:0004323 +name: middle phalanx of manual digit 5 +def: "A middle phalanx that is part of a hand digit 5 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "5th digit of hand intermediate phalanx" EXACT [OBOL:automatic] +synonym: "5th digit of hand middle phalanx" EXACT [OBOL:automatic] +synonym: "5th finger intermediate phalanx" EXACT [OBOL:automatic] +synonym: "5th finger middle phalanx" EXACT [OBOL:automatic] +synonym: "fifth finger intermediate phalanx" EXACT [OBOL:automatic] +synonym: "fifth finger middle phalanx" EXACT [OBOL:automatic] +synonym: "fifth middle phalanx of hand" EXACT [FMA:23936] +synonym: "hand digit 5 intermediate phalanx" EXACT [OBOL:automatic] +synonym: "hand digit 5 middle phalanx" EXACT [OBOL:automatic] +synonym: "intermediate phalanx of 5th digit of hand" EXACT [OBOL:automatic] +synonym: "intermediate phalanx of 5th finger" EXACT [OBOL:automatic] +synonym: "intermediate phalanx of fifth finger" EXACT [OBOL:automatic] +synonym: "intermediate phalanx of hand digit 5" EXACT [OBOL:automatic] +synonym: "middle phalanx of 5th digit of hand" EXACT [OBOL:automatic] +synonym: "middle phalanx of 5th finger" EXACT [OBOL:automatic] +synonym: "middle phalanx of fifth digit of hand" EXACT [FMA:23936] +synonym: "middle phalanx of fifth finger" EXACT [OBOL:automatic] +synonym: "middle phalanx of little finger" EXACT [OBOL:automatic] +synonym: "middle phalanx of manual digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: FMA:23936 +xref: http://www.snomedbrowser.com/Codes/Details/263410009 +is_a: UBERON:0003639 ! manual digit 5 phalanx +is_a: UBERON:0003864 ! middle phalanx of manus +is_a: UBERON:0014491 ! middle phalanx of digit 5 +intersection_of: UBERON:0004301 ! middle phalanx +intersection_of: part_of UBERON:0003625 ! manual digit 5 + +[Term] +id: UBERON:0004324 +name: middle phalanx of pedal digit 2 +def: "A middle phalanx that is part of a foot digit 2 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "2nd toe intermediate phalanx" EXACT [OBOL:automatic] +synonym: "2nd toe middle phalanx" EXACT [OBOL:automatic] +synonym: "foot digit 2 intermediate phalanx" EXACT [OBOL:automatic] +synonym: "foot digit 2 middle phalanx" EXACT [OBOL:automatic] +synonym: "intermediate phalanx of 2nd toe" EXACT [OBOL:automatic] +synonym: "intermediate phalanx of foot digit 2" EXACT [OBOL:automatic] +synonym: "middle phalanx of 2nd toe" EXACT [OBOL:automatic] +synonym: "middle phalanx of foot digit 2" EXACT [OBOL:automatic] +synonym: "middle phalanx of pedal digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "middle phalanx of second digit of foot" EXACT [FMA:32623] +synonym: "middle phalanx of second toe" EXACT [FMA:32623] +synonym: "middle phalanx of the 2nd toe" EXACT [OBOL:automatic] +synonym: "second middle phalanx of foot" EXACT [FMA:32623] +xref: FMA:32623 +xref: http://www.snomedbrowser.com/Codes/Details/182152006 +is_a: UBERON:0003641 ! pedal digit 2 phalanx +is_a: UBERON:0003866 ! middle phalanx of pes +is_a: UBERON:0014488 ! middle phalanx of digit 2 +intersection_of: UBERON:0004301 ! middle phalanx +intersection_of: part_of UBERON:0003632 ! pedal digit 2 + +[Term] +id: UBERON:0004325 +name: middle phalanx of pedal digit 3 +def: "A middle phalanx that is part of a foot digit 3 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "3rd toe intermediate phalanx" EXACT [OBOL:automatic] +synonym: "3rd toe middle phalanx" EXACT [OBOL:automatic] +synonym: "foot digit 3 intermediate phalanx" EXACT [OBOL:automatic] +synonym: "foot digit 3 middle phalanx" EXACT [OBOL:automatic] +synonym: "hindlimb digit III P2" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "hindlimb short pastern bone" NARROW [http://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] +synonym: "intermediate phalanx of 3rd toe" EXACT [OBOL:automatic] +synonym: "intermediate phalanx of foot digit 3" EXACT [OBOL:automatic] +synonym: "middle phalanx of 3rd toe" EXACT [OBOL:automatic] +synonym: "middle phalanx of foot digit 3" EXACT [OBOL:automatic] +synonym: "middle phalanx of pedal digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "middle phalanx of the 3rd toe" EXACT [OBOL:automatic] +synonym: "middle phalanx of third digit of foot" EXACT [FMA:32624] +synonym: "middle phalanx of third toe" EXACT [FMA:32624] +synonym: "third middle phalanx of foot" EXACT [FMA:32624] +xref: FMA:32624 +xref: http://www.snomedbrowser.com/Codes/Details/182154007 +xref: http://www.snomedbrowser.com/Codes/Details/370677009 +is_a: UBERON:0003642 ! pedal digit 3 phalanx +is_a: UBERON:0003866 ! middle phalanx of pes +is_a: UBERON:0014489 ! middle phalanx of digit 3 +intersection_of: UBERON:0004301 ! middle phalanx +intersection_of: part_of UBERON:0003633 ! pedal digit 3 + +[Term] +id: UBERON:0004326 +name: middle phalanx of pedal digit 4 +def: "A middle phalanx that is part of a pedal digit 4 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "4th toe intermediate phalanx" EXACT [OBOL:automatic] +synonym: "4th toe middle phalanx" EXACT [OBOL:automatic] +synonym: "foot digit 4 intermediate phalanx" EXACT [OBOL:automatic] +synonym: "foot digit 4 middle phalanx" EXACT [OBOL:automatic] +synonym: "fourth middle phalanx of foot" EXACT [FMA:32625] +synonym: "intermediate phalanx of 4th toe" EXACT [OBOL:automatic] +synonym: "intermediate phalanx of foot digit 4" EXACT [OBOL:automatic] +synonym: "middle phalanx of 4th toe" EXACT [OBOL:automatic] +synonym: "middle phalanx of foot digit 4" EXACT [OBOL:automatic] +synonym: "middle phalanx of fourth digit of foot" EXACT [FMA:32625] +synonym: "middle phalanx of fourth toe" EXACT [OBOL:automatic] +synonym: "middle phalanx of pedal digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "middle phalanx of the 4th toe" EXACT [OBOL:automatic] +xref: FMA:32625 +xref: http://www.snomedbrowser.com/Codes/Details/182156009 +is_a: UBERON:0003862 ! pedal digit 4 phalanx +is_a: UBERON:0003866 ! middle phalanx of pes +is_a: UBERON:0014490 ! middle phalanx of digit 4 +intersection_of: UBERON:0004301 ! middle phalanx +intersection_of: part_of UBERON:0003634 ! pedal digit 4 + +[Term] +id: UBERON:0004327 +name: middle phalanx of pedal digit 5 +def: "A middle phalanx that is part of a pedal digit 5 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "5th toe intermediate phalanx" EXACT [OBOL:automatic] +synonym: "5th toe middle phalanx" EXACT [OBOL:automatic] +synonym: "foot digit 5 intermediate phalanx" EXACT [OBOL:automatic] +synonym: "foot digit 5 middle phalanx" EXACT [OBOL:automatic] +synonym: "intermediate phalanx of 5th toe" EXACT [OBOL:automatic] +synonym: "intermediate phalanx of foot digit 5" EXACT [OBOL:automatic] +synonym: "middle phalanx of 5th toe" EXACT [OBOL:automatic] +synonym: "middle phalanx of foot digit 5" EXACT [OBOL:automatic] +synonym: "middle phalanx of little toe" EXACT [OBOL:automatic] +synonym: "middle phalanx of pedal digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "middle phalanx of the 5th toe" EXACT [OBOL:automatic] +xref: FMA:230984 +xref: http://www.snomedbrowser.com/Codes/Details/182158005 +xref: http://www.snomedbrowser.com/Codes/Details/244673009 +is_a: UBERON:0003863 ! pedal digit 5 phalanx +is_a: UBERON:0003866 ! middle phalanx of pes +is_a: UBERON:0014491 ! middle phalanx of digit 5 +intersection_of: UBERON:0004301 ! middle phalanx +intersection_of: part_of UBERON:0003635 ! pedal digit 5 + +[Term] +id: UBERON:0004328 +name: proximal phalanx of manual digit 2 +def: "A proximal phalanx that is part of a hand digit 2 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "2nd digit of hand proximal phalanx" EXACT [OBOL:automatic] +synonym: "2nd finger proximal phalanx" EXACT [OBOL:automatic] +synonym: "hand digit 2 proximal phalanx" EXACT [OBOL:automatic] +synonym: "manual digit 2 proximal phalanx" EXACT [PHENOSCAPE:wd] +synonym: "manual phalanx II-1" EXACT [PHENOSCAPE:wd] +synonym: "proximal phalanx of 2nd digit of hand" EXACT [OBOL:automatic] +synonym: "proximal phalanx of 2nd finger" EXACT [OBOL:automatic] +synonym: "proximal phalanx of index finger" EXACT [FMA:23919] +synonym: "proximal phalanx of manual digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal phalanx of second digit of hand" EXACT [FMA:23919] +synonym: "proximal phalanx of second finger" EXACT [OBOL:automatic] +synonym: "second finger proximal phalanx" EXACT [OBOL:automatic] +synonym: "second proximal phalanx of hand" EXACT [FMA:23919] +xref: FMA:23919 +xref: http://www.snomedbrowser.com/Codes/Details/263403003 +is_a: UBERON:0002234 ! proximal phalanx of manus +is_a: UBERON:0003636 ! manual digit 2 phalanx +is_a: UBERON:0014502 ! proximal phalanx of digit 2 +intersection_of: UBERON:0004302 ! proximal phalanx +intersection_of: part_of UBERON:0003622 ! manual digit 2 +relationship: proximally_connected_to UBERON:0003646 ! metacarpal bone of digit 2 + +[Term] +id: UBERON:0004329 +name: proximal phalanx of manual digit 3 +def: "A proximal phalanx that is part of a hand digit 3 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "3rd digit of hand proximal phalanx" EXACT [OBOL:automatic] +synonym: "3rd finger proximal phalanx" EXACT [OBOL:automatic] +synonym: "hand digit 3 proximal phalanx" EXACT [OBOL:automatic] +synonym: "manual digit 3 proximal phalanx" EXACT [PHENOSCAPE:wd] +synonym: "manual phalanx III-1" EXACT [PHENOSCAPE:wd] +synonym: "proximal phalanx of 3rd digit of hand" EXACT [OBOL:automatic] +synonym: "proximal phalanx of 3rd finger" EXACT [OBOL:automatic] +synonym: "proximal phalanx of manual digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal phalanx of middle finger" EXACT [FMA:23920] +synonym: "proximal phalanx of third digit of hand" EXACT [FMA:23920] +synonym: "proximal phalanx of third finger" EXACT [OBOL:automatic] +synonym: "third finger proximal phalanx" EXACT [OBOL:automatic] +synonym: "third proximal phalanx of hand" EXACT [FMA:23920] +xref: FMA:23920 +xref: http://www.snomedbrowser.com/Codes/Details/263404009 +xref: http://www.snomedbrowser.com/Codes/Details/370735003 +is_a: UBERON:0002234 ! proximal phalanx of manus +is_a: UBERON:0003637 ! manual digit 3 phalanx +is_a: UBERON:0014503 ! proximal phalanx of digit 3 +intersection_of: UBERON:0004302 ! proximal phalanx +intersection_of: part_of UBERON:0003623 ! manual digit 3 +relationship: proximally_connected_to UBERON:0003647 ! metacarpal bone of digit 3 + +[Term] +id: UBERON:0004330 +name: proximal phalanx of manual digit 4 +def: "A proximal phalanx that is part of a hand digit 4 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "4th digit of hand proximal phalanx" EXACT [OBOL:automatic] +synonym: "4th finger proximal phalanx" EXACT [OBOL:automatic] +synonym: "fourth finger proximal phalanx" EXACT [OBOL:automatic] +synonym: "fourth proximal phalanx of hand" EXACT [FMA:23921] +synonym: "hand digit 4 proximal phalanx" EXACT [OBOL:automatic] +synonym: "manual digit 4 proximal phalanx" EXACT [PHENOSCAPE:wd] +synonym: "manual phalanx IV-1" EXACT [PHENOSCAPE:wd] +synonym: "proximal phalanx of 4th digit of hand" EXACT [OBOL:automatic] +synonym: "proximal phalanx of 4th finger" EXACT [OBOL:automatic] +synonym: "proximal phalanx of fourth digit of hand" EXACT [FMA:23921] +synonym: "proximal phalanx of fourth finger" EXACT [OBOL:automatic] +synonym: "proximal phalanx of manual digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal phalanx of ring finger" EXACT [FMA:23921] +xref: FMA:23921 +xref: http://www.snomedbrowser.com/Codes/Details/263405005 +is_a: UBERON:0002234 ! proximal phalanx of manus +is_a: UBERON:0003638 ! manual digit 4 phalanx +is_a: UBERON:0014504 ! proximal phalanx of digit 4 +intersection_of: UBERON:0004302 ! proximal phalanx +intersection_of: part_of UBERON:0003624 ! manual digit 4 +relationship: proximally_connected_to UBERON:0003648 ! metacarpal bone of digit 4 + +[Term] +id: UBERON:0004331 +name: proximal phalanx of manual digit 5 +def: "A proximal phalanx that is part of a hand digit 5 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "5th digit of hand proximal phalanx" EXACT [OBOL:automatic] +synonym: "5th finger proximal phalanx" EXACT [OBOL:automatic] +synonym: "fifth finger proximal phalanx" EXACT [OBOL:automatic] +synonym: "fifth proximal phalanx of hand" EXACT [FMA:23922] +synonym: "hand digit 5 proximal phalanx" EXACT [OBOL:automatic] +synonym: "manual digit 5 proximal phalanx" EXACT [PHENOSCAPE:wd] +synonym: "manual phalanx V-1" EXACT [PHENOSCAPE:wd] +synonym: "proximal phalanx of 5th digit of hand" EXACT [OBOL:automatic] +synonym: "proximal phalanx of 5th finger" EXACT [OBOL:automatic] +synonym: "proximal phalanx of fifth digit of hand" EXACT [FMA:23922] +synonym: "proximal phalanx of fifth finger" EXACT [OBOL:automatic] +synonym: "proximal phalanx of little finger" EXACT [FMA:23922] +synonym: "proximal phalanx of manual digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: FMA:23922 +xref: http://www.snomedbrowser.com/Codes/Details/263406006 +is_a: UBERON:0002234 ! proximal phalanx of manus +is_a: UBERON:0003639 ! manual digit 5 phalanx +is_a: UBERON:0014505 ! proximal phalanx of digit 5 +intersection_of: UBERON:0004302 ! proximal phalanx +intersection_of: part_of UBERON:0003625 ! manual digit 5 +relationship: proximally_connected_to UBERON:0003649 ! metacarpal bone of digit 5 + +[Term] +id: UBERON:0004332 +name: proximal phalanx of pedal digit 1 +def: "A proximal phalanx that is part of a pedal digit 1 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "foot digit 1 proximal phalanx" EXACT [OBOL:automatic] +synonym: "hallux proximal phalanx" EXACT [OBOL:automatic] +synonym: "pedal phalanx I-1" EXACT [PHENOSCAPE:wd] +synonym: "predal digit 1 proximal phalanx" EXACT [PHENOSCAPE:wd] +synonym: "proximal phalanx of big toe" EXACT [FMA:43252] +synonym: "proximal phalanx of foot digit 1" EXACT [OBOL:automatic] +synonym: "proximal phalanx of great toe" EXACT [FMA:43252] +synonym: "proximal phalanx of hallux" EXACT [OBOL:automatic] +synonym: "proximal phalanx of pedal digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal phalanx of the 1st toe" EXACT [] +xref: FMA:43252 +xref: http://www.snomedbrowser.com/Codes/Details/182150003 +is_a: UBERON:0003640 ! pedal digit 1 phalanx +is_a: UBERON:0003868 ! proximal phalanx of pes +is_a: UBERON:0014501 ! proximal phalanx of digit 1 +intersection_of: UBERON:0004302 ! proximal phalanx +intersection_of: part_of UBERON:0003631 ! pedal digit 1 +relationship: proximally_connected_to UBERON:0003650 ! metatarsal bone of digit 1 + +[Term] +id: UBERON:0004333 +name: proximal phalanx of pedal digit 2 +def: "A proximal phalanx that is part of a pedal digit 2 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "2nd toe proximal phalanx" EXACT [OBOL:automatic] +synonym: "foot digit 2 proximal phalanx" EXACT [OBOL:automatic] +synonym: "pedal phalanx II-1" EXACT [PHENOSCAPE:wd] +synonym: "predal digit 2 proximal phalanx" EXACT [PHENOSCAPE:wd] +synonym: "proximal phalanx of 2nd toe" EXACT [OBOL:automatic] +synonym: "proximal phalanx of foot digit 2" EXACT [OBOL:automatic] +synonym: "proximal phalanx of pedal digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal phalanx of second digit of foot" EXACT [FMA:32618] +synonym: "proximal phalanx of second toe" EXACT [FMA:32618] +synonym: "proximal phalanx of the 2nd toe" EXACT [] +synonym: "second proximal phalanx of foot" EXACT [FMA:32618] +xref: FMA:32618 +xref: http://www.snomedbrowser.com/Codes/Details/182151004 +is_a: UBERON:0003641 ! pedal digit 2 phalanx +is_a: UBERON:0003868 ! proximal phalanx of pes +is_a: UBERON:0014502 ! proximal phalanx of digit 2 +intersection_of: UBERON:0004302 ! proximal phalanx +intersection_of: part_of UBERON:0003632 ! pedal digit 2 +relationship: proximally_connected_to UBERON:0003651 ! metatarsal bone of digit 2 + +[Term] +id: UBERON:0004334 +name: proximal phalanx of pedal digit 3 +def: "A proximal phalanx that is part of a pedal digit 3 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "3rd toe proximal phalanx" EXACT [OBOL:automatic] +synonym: "foot digit 3 proximal phalanx" EXACT [OBOL:automatic] +synonym: "pedal phalanx III-1" EXACT [PHENOSCAPE:wd] +synonym: "predal digit 3 proximal phalanx" EXACT [PHENOSCAPE:wd] +synonym: "proximal phalanx of 3rd toe" EXACT [OBOL:automatic] +synonym: "proximal phalanx of foot digit 3" EXACT [OBOL:automatic] +synonym: "proximal phalanx of pedal digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal phalanx of the 3rd toe" EXACT [] +synonym: "proximal phalanx of third digit of foot" EXACT [FMA:32619] +synonym: "proximal phalanx of third toe" EXACT [FMA:32619] +synonym: "third proximal phalanx of foot" EXACT [FMA:32619] +xref: FMA:32619 +xref: http://www.snomedbrowser.com/Codes/Details/182153001 +xref: http://www.snomedbrowser.com/Codes/Details/370734004 +is_a: UBERON:0003642 ! pedal digit 3 phalanx +is_a: UBERON:0003868 ! proximal phalanx of pes +is_a: UBERON:0014503 ! proximal phalanx of digit 3 +intersection_of: UBERON:0004302 ! proximal phalanx +intersection_of: part_of UBERON:0003633 ! pedal digit 3 +relationship: proximally_connected_to UBERON:0003652 ! metatarsal bone of digit 3 + +[Term] +id: UBERON:0004335 +name: proximal phalanx of pedal digit 4 +def: "A proximal phalanx that is part of a pedal digit 4 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "4th toe proximal phalanx" EXACT [OBOL:automatic] +synonym: "foot digit 4 proximal phalanx" EXACT [OBOL:automatic] +synonym: "fourth proximal phalanx of foot" EXACT [FMA:32620] +synonym: "pedal phalanx IV-1" EXACT [PHENOSCAPE:wd] +synonym: "predal digit 4 proximal phalanx" EXACT [PHENOSCAPE:wd] +synonym: "proximal phalanx of 4th toe" EXACT [OBOL:automatic] +synonym: "proximal phalanx of foot digit 4" EXACT [OBOL:automatic] +synonym: "proximal phalanx of fourth digit of foot" EXACT [FMA:32620] +synonym: "proximal phalanx of fourth toe" EXACT [FMA:32620] +synonym: "proximal phalanx of pedal digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal phalanx of the 4th toe" EXACT [] +xref: FMA:32620 +xref: http://www.snomedbrowser.com/Codes/Details/182155008 +is_a: UBERON:0003862 ! pedal digit 4 phalanx +is_a: UBERON:0003868 ! proximal phalanx of pes +is_a: UBERON:0014504 ! proximal phalanx of digit 4 +intersection_of: UBERON:0004302 ! proximal phalanx +intersection_of: part_of UBERON:0003634 ! pedal digit 4 +relationship: proximally_connected_to UBERON:0003653 ! metatarsal bone of digit 4 + +[Term] +id: UBERON:0004336 +name: proximal phalanx of pedal digit 5 +def: "A proximal phalanx that is part of a pedal digit 5 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "5th toe proximal phalanx" EXACT [OBOL:automatic] +synonym: "fifth proximal phalanx of foot" EXACT [FMA:32621] +synonym: "foot digit 5 proximal phalanx" EXACT [OBOL:automatic] +synonym: "pedal phalanx V-1" EXACT [PHENOSCAPE:wd] +synonym: "predal digit 5 proximal phalanx" EXACT [PHENOSCAPE:wd] +synonym: "proximal phalanx of 5th toe" EXACT [OBOL:automatic] +synonym: "proximal phalanx of fifth digit of foot" EXACT [FMA:32621] +synonym: "proximal phalanx of fifth toe" EXACT [FMA:32621] +synonym: "proximal phalanx of foot digit 5" EXACT [OBOL:automatic] +synonym: "proximal phalanx of little toe" EXACT [OBOL:automatic] +synonym: "proximal phalanx of pedal digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal phalanx of the 5th toe" EXACT [] +xref: FMA:32621 +xref: http://www.snomedbrowser.com/Codes/Details/182157000 +xref: http://www.snomedbrowser.com/Codes/Details/244672004 +is_a: UBERON:0003863 ! pedal digit 5 phalanx +is_a: UBERON:0003868 ! proximal phalanx of pes +is_a: UBERON:0014505 ! proximal phalanx of digit 5 +intersection_of: UBERON:0004302 ! proximal phalanx +intersection_of: part_of UBERON:0003635 ! pedal digit 5 +relationship: proximally_connected_to UBERON:0003654 ! metatarsal bone of digit 5 + +[Term] +id: UBERON:0004337 +name: distal phalanx of manual digit 1 +def: "A distal phalanx that is part of a hand digit 1 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "distal phalanx of first digit of hand" EXACT [FMA:23945] +synonym: "distal phalanx of manual digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "distal phalanx of thumb" EXACT [OBOL:automatic] +synonym: "first distal phalanx of hand" EXACT [FMA:23945] +synonym: "manual digit 1 distal phalanx" EXACT [PHENOSCAPE:wd] +synonym: "PDP" EXACT [http://en.wikipedia.org/wiki/Distal_phalanges#Thumb] +synonym: "pollical distal phalanx" EXACT [http://en.wikipedia.org/wiki/Distal_phalanges#Thumb] +synonym: "thumb distal phalanx" EXACT [OBOL:automatic] +xref: FMA:23945 +xref: http://www.snomedbrowser.com/Codes/Details/182007006 +is_a: UBERON:0003620 ! manual digit 1 phalanx +is_a: UBERON:0003865 ! distal phalanx of manus +is_a: UBERON:0014483 ! distal phalanx of digit 1 +intersection_of: UBERON:0004300 ! distal phalanx +intersection_of: part_of UBERON:0001463 ! manual digit 1 + +[Term] +id: UBERON:0004338 +name: proximal phalanx of manual digit 1 +def: "A proximal phalanx that is part of a hand digit 1 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "first proximal phalanx of hand" EXACT [FMA:23918] +synonym: "manual digit 1 proximal phalanx" EXACT [PHENOSCAPE:wd] +synonym: "manual phalanx I-1" EXACT [PHENOSCAPE:wd] +synonym: "proximal phalanx of first digit of hand" EXACT [FMA:23918] +synonym: "proximal phalanx of manual digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal phalanx of thumb" EXACT [OBOL:automatic] +synonym: "thumb proximal" EXACT [OBOL:automatic] +xref: FMA:23918 +xref: http://www.snomedbrowser.com/Codes/Details/181992006 +is_a: UBERON:0002234 ! proximal phalanx of manus +is_a: UBERON:0003620 ! manual digit 1 phalanx +is_a: UBERON:0014501 ! proximal phalanx of digit 1 +intersection_of: UBERON:0004302 ! proximal phalanx +intersection_of: part_of UBERON:0001463 ! manual digit 1 +relationship: proximally_connected_to UBERON:0003645 ! metacarpal bone of digit 1 + +[Term] +id: UBERON:0004339 +name: vault of skull +def: "Upper part of skull, consisting of parietals, frontals, post-parietals, and in some species the squamosal and a portion of the alisphenoid" [http://en.wikipedia.org/wiki/Calvaria_(skull), http://www.ncbi.nlm.nih.gov/pubmed/11523816, MP:0000076] +comment: Terminology notes. we include calvarium as a synonym, but Gray's Anatomy's list includes the Ethmoid and Sphenoid bone in the Calvaria. Some books (and HPO) state that calvaria consists of just the frontal bone, parietal bone, temporal bone, and occipital bone. Note vault may not be precisely equivalent to calvaria +subset: pheno_slim +synonym: "calva" EXACT [FMA:52800] +synonym: "calvaria" RELATED PLURAL [ZFA:0005606] +synonym: "calvarium" RELATED [] +synonym: "cranial vault" EXACT [ZFA:0005606] +synonym: "skull roof" NARROW [] +synonym: "skull vault" EXACT [] +synonym: "skullcap" RELATED [ZFA:0005606] +xref: Calvaria:(skull) +xref: EHDAA2:0002167 +xref: EHDAA:9538 +xref: EMAPA:18016 +xref: FMA:52800 +xref: http://linkedlifedata.com/resource/umls/id/C0205950 +xref: http://www.snomedbrowser.com/Codes/Details/140592008 +xref: NCIT:C81188 +xref: UMLS:C0205950 {source="ncithesaurus:Skullcap"} +xref: VHOG:0000331 +xref: ZFA:0005606 +is_a: UBERON:0010912 ! subdivision of skeleton +relationship: contributes_to_morphology_of UBERON:0003128 ! cranium +relationship: part_of UBERON:0001703 ! neurocranium + +[Term] +id: UBERON:0004340 +name: allantois +def: "A membranous sac that develops from the posterior part of the alimentary canal in the embryos of mammals, birds, and reptiles, and it is important in the formation of the umbilical cord and placenta in mammals[VHOG]." [http://en.wikipedia.org/wiki/Allantois, VHOG:0000738] +subset: pheno_slim +synonym: "allantoic bud" RELATED [EMAPA:16107] +xref: BTO:0000474 +xref: EHDAA2:0001504 +xref: EMAPA:16107 +xref: EMAPA_RETIRED:16084 +xref: http://en.wikipedia.org/wiki/Allantois +xref: http://linkedlifedata.com/resource/umls/id/C0002084 +xref: http://www.snomedbrowser.com/Codes/Details/308825007 +xref: MESH:A16.254.403.147 +xref: NCIT:C34101 +xref: RETIRED_EHDAA2:0000114 +xref: UMLS:C0002084 {source="ncithesaurus:Allantois"} +xref: VHOG:0000738 +is_a: UBERON:0005631 ! extraembryonic membrane +relationship: develops_from UBERON:0000162 {source="Hymans"} ! cloaca +relationship: has_developmental_contribution_from UBERON:0000925 {notes="hindgut diverticulum endoderm", source="ISBN:0073040584"} ! endoderm +relationship: has_developmental_contribution_from UBERON:0004872 {source="ISBN:0073040584"} ! splanchnic layer of lateral plate mesoderm + +[Term] +id: UBERON:0004341 +name: primitive streak +def: "The primitive streak is a structure that forms during the early stages of avian, reptilian and mammalian embryonic development[WP]. the midline ridge of the embryonic epiblast that later develops into mesoderm and endoderm[MP]" [http://en.wikipedia.org/wiki/Primitive_streak, MP:0002231] +subset: early_development +subset: pheno_slim +synonym: "primitive streak - blastopore - germ ring" EXACT [VHOG:0001202] +xref: EHDAA2:0001525 +xref: EHDAA:185 +xref: EMAPA:16072 +xref: FMA:293110 +xref: http://linkedlifedata.com/resource/umls/id/C0033153 +xref: http://www.snomedbrowser.com/Codes/Details/361438007 +xref: NCIT:C28402 +xref: Primitive:streak +xref: UMLS:C0033153 {source="ncithesaurus:Primitive_Streak"} +xref: VHOG:0001202 +is_a: UBERON:0000485 {source="EHDAA2"} ! simple columnar epithelium +is_a: UBERON:0005291 ! embryonic tissue +relationship: dubious_for_taxon NCBITaxon:32443 +relationship: has_potential_to_develop_into UBERON:0000925 ! endoderm +relationship: has_potential_to_develop_into UBERON:0000926 ! mesoderm + +[Term] +id: UBERON:0004344 +name: cardinal vein +def: "Any of the four veins in the developing vertebrate embryo which run along each side of the vertebral column" [MP:0004783] +subset: pheno_slim +synonym: "cardinal sinus" RELATED [BTO:0004385] +synonym: "cardinal vein system" RELATED [EHDAA2:0000213] +synonym: "Cuvierian vein" RELATED [BTO:0004385] +xref: AAO:0011022 +xref: BTO:0004385 +xref: EHDAA2:0000213 +xref: EHDAA:1310 +xref: EMAPA:16354 +xref: http://linkedlifedata.com/resource/umls/id/C0231085 +xref: http://www.snomedbrowser.com/Codes/Details/362860004 +xref: NCIT:C34116 +xref: UMLS:C0231085 {source="ncithesaurus:Cardinal_Vein"} +xref: VHOG:0001197 +xref: XAO:0000052 +is_a: UBERON:0001638 ! vein +relationship: part_of UBERON:0000922 ! embryo + +[Term] +id: UBERON:0004345 +name: trophectoderm +def: "outermost layer of cells in the blastodermic vesicle, which will develop into the trophoblast layer and then contact the endometrium and take part in establishing the embryo's means of nutrition" [MP:0005028] +subset: early_development +subset: pheno_slim +xref: BTO:0001840 +xref: EHDAA2:0002091 +xref: EHDAA:56 +xref: EMAPA:16046 +xref: VHOG:0000979 +is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0005292 ! extraembryonic tissue +relationship: develops_from UBERON:0000085 {source="EHDAA2"} ! morula +relationship: part_of UBERON:0005631 {source="EHDAA2"} ! extraembryonic membrane + +[Term] +id: UBERON:0004346 +name: gubernaculum (male or female) +alt_id: UBERON:0000452 +def: "embryonic structures which begin as undifferentiated mesenchyme attaching to the caudal end of the gonads. The gubernaculum is present only during the development of the urinary and reproductive organs, being replaced by distinct vestiges in males and females[WP]. Enitoinguinal ligaments that, in the male, connect the fetal testis to the developing scrotum, and, in the female, connect the ovaries to the uterus[MP]" [http://en.wikipedia.org/wiki/Gubernaculum, MP:0005149] +subset: pheno_slim +synonym: "caudal suspensory ligament" RELATED [EMAPA:19089] +synonym: "Gabernaculum" RELATED LATIN [http://en.wikipedia.org/wiki/Gubernaculum] +synonym: "gubernaculae" RELATED PLURAL [] +synonym: "gubernaculum" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: http://en.wikipedia.org/wiki/Gubernaculum +xref: http://linkedlifedata.com/resource/umls/id/C0228051 +xref: NCIT:C82952 +xref: UMLS:C0228051 {source="ncithesaurus:Gubernaculum_Testis"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0005172 ! abdomen element +is_a: UBERON:0008845 {source="MP"} ! nonskeletal ligament +relationship: attaches_to UBERON:0000991 ! gonad +relationship: develops_from UBERON:0003064 {source="Wikipedia"} ! intermediate mesoderm +relationship: part_of UBERON:0000323 {source="BTO"} ! late embryo +relationship: part_of UBERON:0002358 ! peritoneum + +[Term] +id: UBERON:0004347 +name: limb bud +def: "An outgrowth on the lateral trunk of the embryo that develops into a limb. The limb bud is divided into ectoderm and mesenchyme[cjm, modified from MP]." [http://en.wikipedia.org/wiki/Limb_bud, https://orcid.org/0000-0002-6601-2165, ISBN:9780878932504, MP:0005650] +comment: developmentally_induced_by Fgf10, capable of initiating limb forming interactions between endoderm and mesoderm +subset: pheno_slim +synonym: "gemmae membrorum" RELATED LATIN [http://en.wikipedia.org/wiki/Limb_bud] +synonym: "limb buds" EXACT PLURAL [] +synonym: "limbbud" EXACT [GO:0060174] +xref: AAO:0010375 +xref: BTO:0001640 +xref: EMAPA:35944 +xref: FMA:296780 +xref: GAID:1307 +xref: http://linkedlifedata.com/resource/umls/id/C0282505 +xref: Limb:bud +xref: MESH:A16.254.462 +xref: NCIT:C34203 +xref: UMLS:C0282505 {source="ncithesaurus:Limb_Bud"} +xref: XAO:0003161 +is_a: UBERON:0004357 ! paired limb/fin bud +relationship: developmentally_induced_by UBERON:0003081 {source="ISBN:9780878932504"} ! lateral plate mesoderm +relationship: has_developmental_contribution_from UBERON:0005733 ! limb field +relationship: has_potential_to_develop_into UBERON:0002101 ! limb + +[Term] +id: UBERON:0004348 +name: optic eminence +def: "The embryonic structure that gives rise to the corneal ectoderm" [MP:0006305] +subset: pheno_slim +xref: EHDAA:938 +xref: EMAPA:16322 +xref: RETIRED_EHDAA2:0001308 +xref: VHOG:0001296 +is_a: UBERON:0006598 ! presumptive structure +relationship: has_potential_to_develop_into UBERON:0000964 ! cornea + +[Term] +id: UBERON:0004353 +name: female inguinal canal +def: "An inguinal canal that is part of a female organism. Conveys the round ligament + the ilioinguinal nerve.[WP,unvetted]." [http://en.wikipedia.org/wiki/Inguinal_canal#Contents, MP:0008015] +subset: pheno_slim +synonym: "inguinal canal of female" EXACT [] +xref: Contents +xref: EMAPA:19171 +xref: MA:0003249 +is_a: UBERON:0003702 ! inguinal canal +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0003702 ! inguinal canal +intersection_of: part_of UBERON:0000474 ! female reproductive system +relationship: conduit_for UBERON:0006589 ! round ligament of uterus +relationship: contributes_to_morphology_of UBERON:0000474 ! female reproductive system +relationship: part_of UBERON:0000474 ! female reproductive system + +[Term] +id: UBERON:0004354 +name: male inguinal canal +def: "An inguinal canal that is part of a male organism. Conveys the spermatic cord and its coverings + the ilioinguinal nerve.[WP,unvetted]." [http://en.wikipedia.org/wiki/Inguinal_canal#Contents, MP:0008016] +subset: pheno_slim +synonym: "inguinal canal of male" EXACT [] +xref: Contents +xref: EMAPA:26913 +xref: MA:0003256 +is_a: UBERON:0003702 ! inguinal canal +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0003702 ! inguinal canal +intersection_of: part_of UBERON:0000079 ! male reproductive system +relationship: conduit_for UBERON:0005352 ! spermatic cord +relationship: contributes_to_morphology_of UBERON:0000079 ! male reproductive system +relationship: part_of UBERON:0000079 ! male reproductive system + +[Term] +id: UBERON:0004355 +name: obsolete podocyte foot process +subset: pheno_slim +is_obsolete: true +replaced_by: GO:0098846 + +[Term] +id: UBERON:0004356 +name: apical ectodermal ridge +def: "multilayered ectodermal region at the distal tip of a limb or fin bud necessary for the proper development of the underlying mesenchyme[MP,modified]. Along with the zone of polarizing activity, it is a crucial organizing region during limb development[WP]." [http://en.wikipedia.org/wiki/Apical_ectodermal_ridge, MP:0001676] +subset: pheno_slim +synonym: "AER" RELATED [MP:0001676] +synonym: "apical epidermal ridge" EXACT [XAO:0004121] +synonym: "crista ectodermalis apicalis" RELATED LATIN [http://en.wikipedia.org/wiki/Apical_ectodermal_ridge] +xref: AAO:0010760 +xref: EMAPA:32744 +xref: http://en.wikipedia.org/wiki/Apical_ectodermal_ridge +xref: http://linkedlifedata.com/resource/umls/id/C1516037 +xref: NCIT:C34109 +xref: TAO:0002146 +xref: UMLS:C1516037 {source="ncithesaurus:Apical_Ectodermal_Ridge"} +xref: XAO:0004121 +xref: ZFA:0001702 +is_a: UBERON:0002050 ! embryonic structure +relationship: developmentally_induced_by UBERON:0003104 ! mesenchyme +relationship: part_of UBERON:0000924 ! ectoderm +relationship: part_of UBERON:0004357 ! paired limb/fin bud + +[Term] +id: UBERON:0004357 +name: paired limb/fin bud +def: "An outgrowth on the lateral trunk of the embryo that develops into a limb or paired fin. The limb/fin bud is divided into ectoderm and mesenchyme[cjm, modified from MP]." [https://orcid.org/0000-0002-6601-2165, ISBN:9780878932504, MP:0005650] +comment: Genes: In limb buds of chick and mouse, Shh expression is activated as soon as there is a morphological bud, whereas in S. canicula fin buds, consistent with reported data in other cartilaginous fishes, Shh is transcribed late in fin development[PMID:17187056] +subset: homology_grouping +synonym: "limb - fin bud" EXACT [VHOG:0001258] +synonym: "paired appendage bud" EXACT [] +synonym: "paired limb/fin bud" EXACT [VHOG:0001258] +xref: VHOG:0001258 +is_a: UBERON:0003102 ! surface structure +is_a: UBERON:0006598 ! presumptive structure +relationship: has_developmental_contribution_from UBERON:0005732 ! paired limb/fin field +relationship: has_part UBERON:0004356 ! apical ectodermal ridge +relationship: has_potential_to_develop_into UBERON:0004708 ! paired limb/fin + +[Term] +id: UBERON:0004358 +name: caput epididymis +def: "The head of the epididymis" [MP:0002660] +subset: pheno_slim +synonym: "caput" BROAD [MP:0002660] +synonym: "caput epididymidis" RELATED [BTO:0000336] +synonym: "epididymal head" EXACT [FMA:18259] +synonym: "epididymis head" EXACT [FMA:18259] +synonym: "epidymis head" EXACT [FMA:18259] +synonym: "head of epididymis" EXACT [FMA:18259] +synonym: "head of epidymis" EXACT [] +xref: BTO:0000336 +xref: EMAPA:19291 +xref: FMA:18259 +xref: http://linkedlifedata.com/resource/umls/id/C0228023 +xref: http://www.snomedbrowser.com/Codes/Details/362282002 +xref: MA:0002762 +xref: NCIT:C32717 +xref: UMLS:C0228023 {source="ncithesaurus:Head_of_the_Epididymis"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0001301 ! epididymis + +[Term] +id: UBERON:0004359 +name: corpus epididymis +def: "The body of the epididymis" [MP:0002661] +subset: pheno_slim +synonym: "body of epididymis" EXACT [FMA:18260] +synonym: "body of epidymis" EXACT [] +synonym: "corpus epididymidis" RELATED [BTO:0000209] +synonym: "epididymal body" EXACT [FMA:18260] +synonym: "epididymis body" EXACT [FMA:18260] +synonym: "epidymis body" EXACT [] +xref: BTO:0000209 +xref: EMAPA:19293 +xref: FMA:18260 +xref: http://linkedlifedata.com/resource/umls/id/C0228022 +xref: http://www.snomedbrowser.com/Codes/Details/279620001 +xref: MA:0002764 +xref: NCIT:C32217 +xref: UMLS:C0228022 {source="ncithesaurus:Body_of_the_Epididymis"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0001301 ! epididymis + +[Term] +id: UBERON:0004360 +name: cauda epididymis +def: "The tail of the epididymis" [MP:0002662] +subset: pheno_slim +synonym: "cauda epididymidis" EXACT [BTO:0000210] +synonym: "corpus" BROAD [MP:0002662] +synonym: "epididymal cauda" EXACT [BTO:0000210] +synonym: "epididymal tail" EXACT [FMA:18261] +synonym: "epididymis tail" EXACT [FMA:18261] +synonym: "epidymis tail" EXACT [] +synonym: "tail of epididymis" EXACT [FMA:18261] +synonym: "tail of epidymis" EXACT [] +xref: BTO:0000210 +xref: EMAPA:19292 +xref: FMA:18261 +xref: http://linkedlifedata.com/resource/umls/id/C0228024 +xref: http://www.snomedbrowser.com/Codes/Details/279621002 +xref: MA:0002763 +xref: NCIT:C33732 +xref: UMLS:C0228024 {source="ncithesaurus:Tail_of_the_Epididymis"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0001301 ! epididymis + +[Term] +id: UBERON:0004361 +name: stylohyoid ligament +def: "The fibrous cord that connects the tip of the styloid process of the temporal bone to the lesser horn of the hyoid bone" [http://en.wikipedia.org/wiki/Stylohyoid_ligament, MP:0009918] +subset: pheno_slim +synonym: "ligamentum stylohyoideum" EXACT [http://en.wikipedia.org/wiki/Stylohyoid_ligament] +synonym: "ligamentum stylohyoideus" EXACT [http://en.wikipedia.org/wiki/Stylohyoid_ligament] +synonym: "stylo-hyoid ligament" EXACT [MA:0002957] +xref: FMA:72308 +xref: http://www.snomedbrowser.com/Codes/Details/66275001 +xref: MA:0002957 +xref: Stylohyoid:ligament +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0008846 {source="FMA"} ! skeletal ligament +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: connects UBERON:0003960 {source="Wikipedia"} ! styloid process of temporal bone +relationship: connects UBERON:0003998 {source="Wikipedia"} ! hyoid bone lesser horn +relationship: develops_from UBERON:0004368 {source="MP-implied-by-def"} ! Reichert's cartilage + +[Term] +id: UBERON:0004362 +name: pharyngeal arch 1 +def: "The first of the series of pharyngeal arches that develop into jaw bones or their homologs, and their associated nerves and arteries" [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "1st arch" RELATED [EHDAA2:0000006] +synonym: "1st pharyngeal arch" EXACT [] +synonym: "1st visceral arch" RELATED [VHOG:0000296] +synonym: "arcus pharyngeus primus" RELATED LATIN [http://en.wikipedia.org/wiki/First_pharyngeal_arch] +synonym: "branchial arch 1" EXACT SENSU [] +synonym: "first branchial arch" EXACT SENSU [] +synonym: "first pharyngeal arch" EXACT [] +synonym: "first visceral arch" EXACT SENSU [] +synonym: "mandibular arch" EXACT [] +synonym: "visceral arch 1" EXACT SENSU [] +xref: AAO:0010364 +xref: CALOHA:TS-2089 +xref: EHDAA2:0000006 +xref: EHDAA:573 +xref: EMAPA:16118 +xref: FMA:293019 +xref: http://en.wikipedia.org/wiki/First_pharyngeal_arch +xref: http://linkedlifedata.com/resource/umls/id/C1517197 +xref: http://www.snomedbrowser.com/Codes/Details/308767008 +xref: MFMO:0000095 +xref: NCIT:C34175 +xref: TAO:0001595 +xref: UMLS:C1517197 {source="ncithesaurus:First_Pharyngeal_Arch"} +xref: VHOG:0000296 +xref: XAO:0000097 +xref: ZFA:0001612 +is_a: UBERON:0002539 ! pharyngeal arch + +[Term] +id: UBERON:0004363 +name: pharyngeal arch artery +alt_id: UBERON:0004342 +def: "One of a series of paired embryological vascular structures formed within a pharyngeal arch; in the adult, some of these vessels give rise to the great vessels[MP]" [MP:0002672] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "a. arcuum pharyngeorum" RELATED LATIN [http://en.wikipedia.org/wiki/Aortic_arches] +synonym: "aortic arch" EXACT [ZFA:0005004] +synonym: "aortic arch artery" RELATED [EMAPA:16684] +synonym: "aortic arches" EXACT PLURAL [ZFA:0005004] +synonym: "arteriae arcuum pharyngeorum" RELATED LATIN [http://en.wikipedia.org/wiki/Aortic_arches] +synonym: "branchial aortic arches" EXACT PLURAL [ZFIN:ZDB-PUB-080512-6] +synonym: "branchial aortic arches" RELATED PLURAL [ZFA:0005004, ZFIN:ZDB-PUB-080512-6] +synonym: "branchial arch artery" EXACT [EMAPA:16684] +synonym: "embryonic aortic arch artery" EXACT [EMAPA:16684, MP:0002672] +synonym: "PAA" EXACT ABBREVIATION [MP:0002672] +synonym: "pharyngeal arch arteries" RELATED PLURAL [] +synonym: "pharyngeal arch artery" EXACT [MP:0002672] +synonym: "pharyngeal arch artery" RELATED [VHOG:0000122] +xref: AAO:0010414 +xref: Aortic:arches +xref: EFO:0003695 +xref: EHDAA2:0000186 +xref: EHDAA:398 +xref: EHDAA:7327 +xref: EMAPA:16684 +xref: http://linkedlifedata.com/resource/umls/id/C0003489 +xref: NCIT:C32123 +xref: TAO:0005004 +xref: UMLS:C0003489 {source="ncithesaurus:Aortic_Arch"} +xref: VHOG:0000122 +xref: XAO:0000341 +xref: ZFA:0005004 +is_a: UBERON:0003469 ! respiratory system artery +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0006598 ! presumptive structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0002539 ! pharyngeal arch +relationship: has_potential_to_develop_into UBERON:0001637 ! artery +relationship: part_of UBERON:0002539 ! pharyngeal arch +relationship: part_of UBERON:0007303 {source="ZFA"} ! pharyngeal vasculature + +[Term] +id: UBERON:0004364 +name: ectoplacental cone +def: "thickened trophoblast of the blastocyst in rodents that becomes the fetal portion of the placenta" [http://www.ncbi.nlm.nih.gov/pubmed/19829370, MP:0001717] +subset: pheno_slim +synonym: "epamniotic cone" EXACT [] +synonym: "placenta - ectoplacental cone" EXACT [] +xref: BTO:0001715 +xref: EMAPA:16059 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0000088 ! trophoblast + +[Term] +id: UBERON:0004365 +name: vitelline blood vessel +def: "blood vessel that is connected to the yolk sac." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +xref: EMAPA:36494 +is_a: UBERON:0001981 ! blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: connected_to UBERON:0001040 ! yolk sac +relationship: connected_to UBERON:0001040 ! yolk sac +relationship: part_of UBERON:0004374 ! vitelline vasculature + +[Term] +id: UBERON:0004366 +name: extraembryonic ectoderm +def: "layer of the endoderm of the extraembryonic tissue." [MP:0002583] +subset: pheno_slim +xref: EMAPA:16065 +is_a: UBERON:0000478 ! extraembryonic structure +relationship: develops_from UBERON:0000924 ! ectoderm + +[Term] +id: UBERON:0004367 +name: Descemet's membrane +def: "A transparent homogeneous acellular layer found between the substantia propria and the endothelial layer of the cornea[MP]." [https://github.com/obophenotype/uberon/issues/15, MP:0004285] +comment: The strong, resistant, thin, noncellular fourth layer of the cornea, located between the endothelium (from which it is secreted) and the stroma. (Cline et al., Dictionary of Visual Science, 4th ed) +subset: pheno_slim +subset: vertebrate_core +synonym: "Descemet membrane" EXACT [] +synonym: "Descemet's posterior elastic lamina" EXACT [FMA:58309] +synonym: "lamina limitans posterior" EXACT [FMA:58309] +synonym: "lamina limitans posterior corneae" EXACT LATIN [FMA:58309, FMA:TA] +synonym: "posterior limiting lamina" EXACT [MA:0001246] +synonym: "posterior limiting lamina of cornea" EXACT [FMA:58309] +synonym: "posterior limiting membrane" EXACT [ZFA:0001686] +xref: Descemet%27s:membrane +xref: EMAPA:18804 +xref: FMA:58309 +xref: GAID:894 +xref: http://linkedlifedata.com/resource/umls/id/C0011665 +xref: http://www.snomedbrowser.com/Codes/Details/281076002 +xref: MA:0001246 +xref: MESH:D003886 +xref: NCIT:C32454 +xref: TAO:0002157 +xref: UMLS:C0011665 {source="ncithesaurus:Descemet_s_Membrane"} +xref: ZFA:0001686 +is_a: UBERON:0005769 ! basement membrane of epithelium +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0005769 ! basement membrane of epithelium +intersection_of: adjacent_to UBERON:0001777 ! substantia propria of cornea +intersection_of: adjacent_to UBERON:0001985 ! corneal endothelium +intersection_of: part_of UBERON:0000964 ! cornea +disjoint_from: UBERON:0004370 {source="lexical"} ! anterior limiting lamina of cornea +relationship: adjacent_to UBERON:0001777 ! substantia propria of cornea +relationship: adjacent_to UBERON:0001985 ! corneal endothelium +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/gkoutos +relationship: part_of UBERON:0000964 ! cornea +relationship: produced_by UBERON:0001985 {source="Cline et al"} ! corneal endothelium + +[Term] +id: UBERON:0004368 +name: Reichert's cartilage +def: "A continuous cartilaginous formation in mesenchyme of the second pharyngeal arch in the embryo. The longer cranial or styloid segment is continuous with the otic capsule; its inferior end is angulated and is situated very close to the oropharynx. The smaller caudal segment is in contact with the body and greater horn of the hyoid cartilaginous structure" [https://doi.org/10.1111/j.1469-7580.2006.00524.x, MP:0004916] +subset: pheno_slim +synonym: "hyaloid cartilage" EXACT [MP:0004916] +synonym: "hyoid cartilage" EXACT [EHDAA2:0000793] +synonym: "Reichert cartilage" EXACT [] +synonym: "second branchial arch cartilage" EXACT [] +synonym: "second pharyngeal arch cartilage" EXACT [MP:0004916] +xref: EHDAA2:0000793 +xref: EMAPA:17622 +xref: FMA:295800 +is_a: UBERON:0003406 ! cartilage of respiratory system +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0013765 ! digestive system element +relationship: develops_from UBERON:0010354 ! Reichert's cartilage pre-cartilage condensation +relationship: part_of UBERON:0001557 {source="EHDAA2"} ! upper respiratory tract +relationship: part_of UBERON:0003066 ! pharyngeal arch 2 + +[Term] +id: UBERON:0004369 +name: Reichert's membrane +def: "An nonvascular extraembryonic basement membrane that forms on the inner surface of the trophectoderm during placenta morphogenesis and is secreted by the distal parietal endoderm; required for the maternofetal exchange of nutrients and is important for the postgastrulation development[MP]. a thick multilayered basement membrane between the parietal endoderm cells and the trophoblast cells" [https://doi.org/10.1007/BF00184752, MP:0003954] +subset: pheno_slim +xref: EMAPA:16057 +xref: FMA:276826 +is_a: UBERON:0000158 ! membranous layer +relationship: develops_from UBERON:0008800 ! parietal endoderm +relationship: part_of UBERON:0016887 ! entire extraembryonic component +relationship: surrounded_by UBERON:0000088 ! trophoblast +relationship: surrounded_by UBERON:0000925 ! endoderm + +[Term] +id: UBERON:0004370 +name: anterior limiting lamina of cornea +def: "A transparent homogeneous acellular layer, 6 to 9 um thick, lying between the basal lamina of the outer layer of stratified epithelium and the substantia propria of the cornea; it is considered to be a basement membrane." [ncithesaurus:Bowman_s_Membrane] +subset: pheno_slim +subset: vertebrate_core +synonym: "anterior elastic lamina" EXACT [ZFA:0001684] +synonym: "anterior limiting lamina" EXACT [MA:0001240] +synonym: "anterior limiting lamina of cornea" EXACT [FMA:58273] +synonym: "anterior limiting membrane" RELATED [ZFA:0001684] +synonym: "Bowman's anterior elastic lamina" EXACT [FMA:58273] +synonym: "Bowman's layer" EXACT [FMA:58273] +synonym: "Bowman's membrane" EXACT [FMA:58273] +synonym: "lamina limitans anterior (cornea)" EXACT [FMA:58273] +synonym: "lamina limitans anterior corneae" EXACT LATIN [FMA:58273, FMA:TA] +synonym: "Reichert's membrane" RELATED DUBIOUS [http://sourceforge.net/tracker/?func=detail&aid=2956371&group_id=76834&atid=974957] +xref: Bowman%27s:membrane +xref: FMA:58273 +xref: http://linkedlifedata.com/resource/umls/id/C0229127 +xref: http://www.snomedbrowser.com/Codes/Details/281075003 +xref: MA:0001240 +xref: NCIT:C32226 +xref: TAO:0002155 +xref: UMLS:C0229127 {source="ncithesaurus:Bowman_s_Membrane"} +xref: ZFA:0001684 +is_a: UBERON:0005769 ! basement membrane of epithelium +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0005769 ! basement membrane of epithelium +intersection_of: attaches_to UBERON:0001772 ! corneal epithelium +intersection_of: part_of UBERON:0000964 ! cornea +relationship: attaches_to UBERON:0001772 ! corneal epithelium +relationship: part_of UBERON:0000964 ! cornea + +[Term] +id: UBERON:0004374 +name: vitelline vasculature +def: "vascular network that is connected to the yolk sac." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "omphalomesenteric system" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "vitelline bloos vessel system" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "vitelline system" RELATED [https://orcid.org/0000-0002-6601-2165] +xref: Vitelline:circulation +is_a: UBERON:0002049 ! vasculature +intersection_of: UBERON:0002049 ! vasculature +intersection_of: connected_to UBERON:0001040 ! yolk sac +relationship: connected_to UBERON:0001040 ! yolk sac + +[Term] +id: UBERON:0004375 +name: bone of free limb or fin +def: "A bone that is part of an appendage [Automatically generated definition]." [OBOL:automatic] +subset: homology_grouping +synonym: "appendage bone" EXACT [] +synonym: "bone of appendage" EXACT [] +synonym: "bone of free segment of appendicular skeleton" EXACT [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010740 ! bone of appendage girdle complex +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0004708 ! paired limb/fin +relationship: part_of UBERON:0011582 ! paired limb/fin skeleton + +[Term] +id: UBERON:0004376 +name: fin bone +def: "A bone that is part of a fin [Automatically generated definition]." [OBOL:automatic] +synonym: "bone of fin" EXACT [] +is_a: UBERON:0001474 ! bone element +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0008897 ! fin +relationship: part_of UBERON:0012353 ! fin skeleton + +[Term] +id: UBERON:0004377 +name: distal metaphysis +def: "A metaphysis that is in the distal side of a diaphysis." [OBOL:automatic] +synonym: "distal diaphyseal end of long bone" EXACT [FMA:32824] +xref: FMA:32824 +is_a: UBERON:0001438 ! metaphysis +intersection_of: UBERON:0001438 ! metaphysis +intersection_of: in_distal_side_of UBERON:0004769 ! diaphysis +relationship: in_distal_side_of UBERON:0004769 ! diaphysis + +[Term] +id: UBERON:0004378 +name: proximal metaphysis +def: "A metaphysis that is in the proximal side of a diaphysis." [OBOL:automatic] +synonym: "proximal diaphyseal end of long bone" EXACT [FMA:32823] +xref: FMA:32823 +is_a: UBERON:0001438 ! metaphysis +intersection_of: UBERON:0001438 ! metaphysis +intersection_of: in_proximal_side_of UBERON:0004769 ! diaphysis +relationship: in_proximal_side_of UBERON:0004769 ! diaphysis + +[Term] +id: UBERON:0004379 +name: distal epiphysis +def: "An epiphysis that is on the distal side of the bone." [http://orcid.org/0000-0002-6601-2165] +synonym: "distal end of long bone" EXACT [FMA:32822] +xref: FMA:32822 +xref: http://www.snomedbrowser.com/Codes/Details/279999006 +is_a: UBERON:0001437 ! epiphysis +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: in_distal_side_of UBERON:0001474 ! bone element +relationship: adjacent_to UBERON:0004377 ! distal metaphysis +relationship: in_distal_side_of UBERON:0001474 ! bone element + +[Term] +id: UBERON:0004380 +name: proximal epiphysis +def: "An epiphysis that is on the proximal side of the bone." [http://orcid.org/0000-0002-6601-2165] +synonym: "proximal end of long bone" EXACT [FMA:32821] +xref: FMA:32821 +xref: http://www.snomedbrowser.com/Codes/Details/279998003 +is_a: UBERON:0001437 ! epiphysis +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: in_proximal_side_of UBERON:0001474 ! bone element +relationship: adjacent_to UBERON:0004378 ! proximal metaphysis +relationship: in_proximal_side_of UBERON:0001474 ! bone element + +[Term] +id: UBERON:0004381 +name: skeleton of limb +def: "The collection of all skeletal elements in an individual limb." [https://orcid.org/0000-0002-6601-2165] +synonym: "free limb skeleton" EXACT [VSAO:0000300] +synonym: "limb skeleton" EXACT [EHDAA2:0002221] +synonym: "set of bones of limb" EXACT [] +xref: EHDAA2:0002221 +xref: EMAPA:32702 +xref: VSAO:0000300 +is_a: UBERON:0010712 ! limb skeleton subdivision +is_a: UBERON:0011582 ! paired limb/fin skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0002101 ! limb +relationship: skeleton_of UBERON:0002101 ! limb + +[Term] +id: UBERON:0004382 +name: epiphysis of humerus +def: "An epiphysis that is part of a humerus [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "humeral epiphysis" EXACT [OBOL:automatic] +xref: FMA:32825 +xref: http://www.snomedbrowser.com/Codes/Details/313054009 +is_a: UBERON:0001437 ! epiphysis +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0000976 ! humerus +relationship: part_of UBERON:0000976 ! humerus + +[Term] +id: UBERON:0004383 +name: epiphysis of tibia +def: "An epiphysis that is part of a tibia [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "tibial epiphysis" EXACT [FMA:33112] +xref: EMAPA:37771 {source="MA:th"} +xref: FMA:33112 +xref: http://www.snomedbrowser.com/Codes/Details/314626006 +xref: MA:0003113 +is_a: UBERON:0001437 ! epiphysis +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0000979 ! tibia +relationship: part_of UBERON:0000979 ! tibia + +[Term] +id: UBERON:0004384 +name: epiphysis of femur +def: "An epiphysis that is part of a femur [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "femoral epiphysis" EXACT [FMA:32838] +xref: EMAPA:37539 {source="MA:th"} +xref: FMA:32838 +xref: http://www.snomedbrowser.com/Codes/Details/314625005 +xref: MA:0003056 +is_a: UBERON:0001437 ! epiphysis +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0000981 ! femur +relationship: part_of UBERON:0000981 ! femur + +[Term] +id: UBERON:0004385 +name: epiphysis of radius +def: "An epiphysis that is part of a radius [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "radial epiphysis" EXACT [FMA:33770] +xref: FMA:33770 +xref: http://www.snomedbrowser.com/Codes/Details/313055005 +is_a: UBERON:0001437 ! epiphysis +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0001423 ! radius bone +relationship: part_of UBERON:0001423 ! radius bone + +[Term] +id: UBERON:0004386 +name: epiphysis of ulna +def: "An epiphysis that is part of an ulna [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "ulnar epiphysis" EXACT [FMA:33748] +xref: FMA:33748 +xref: http://www.snomedbrowser.com/Codes/Details/313056006 +is_a: UBERON:0001437 ! epiphysis +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0001424 ! ulna +relationship: part_of UBERON:0001424 ! ulna + +[Term] +id: UBERON:0004387 +name: epiphysis of phalanx of manus +def: "An epiphysis that is part of a phalanx of a manus [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "epiphysis of phalanx of finger" EXACT [] +synonym: "epiphysis of phalanx of hand" RELATED [FMA:240707] +xref: FMA:240707 +xref: http://www.snomedbrowser.com/Codes/Details/314620000 +is_a: UBERON:0004446 ! epiphysis of phalanx +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0001436 ! phalanx of manus +relationship: part_of UBERON:0001436 ! phalanx of manus + +[Term] +id: UBERON:0004388 +name: epiphysis of fibula +def: "An epiphysis that is part of a fibula [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "fibula epiphysis" EXACT [FMA:33726] +xref: FMA:33726 +is_a: UBERON:0001437 ! epiphysis +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0001446 ! fibula +relationship: part_of UBERON:0001446 ! fibula + +[Term] +id: UBERON:0004389 +name: epiphysis of metatarsal bone +def: "An epiphysis that is part of a metatarsal bone [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "epiphysis of metatarsal" EXACT [] +synonym: "metatarsal bone epiphysis" EXACT [FMA:33814] +synonym: "metatarsal epiphysis" EXACT [] +xref: FMA:33814 +xref: http://www.snomedbrowser.com/Codes/Details/313057002 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0011973 ! epiphysis of phalanx of pes +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0001448 ! metatarsal bone +relationship: part_of UBERON:0001448 ! metatarsal bone + +[Term] +id: UBERON:0004390 +name: epiphysis of metacarpal bone +def: "An epiphysis that is part of a metacarpal bone [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "epiphysis of metacarpal" EXACT [] +synonym: "metacarpal bone epiphysis" EXACT [FMA:33792] +synonym: "metacarpal epiphysis" EXACT [] +xref: FMA:33792 +xref: http://www.snomedbrowser.com/Codes/Details/314907001 +is_a: UBERON:0001437 ! epiphysis +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0002374 ! metacarpal bone +relationship: part_of UBERON:0002374 ! metacarpal bone + +[Term] +id: UBERON:0004391 +name: epiphysis of first metacarpal bone +def: "An epiphysis that is part of a metacarpal bone of digit 1 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "first metacarpal bone epiphysis" EXACT [FMA:33793] +synonym: "metacarpal 1 epiphysis" EXACT [] +xref: FMA:33793 +is_a: UBERON:0004390 ! epiphysis of metacarpal bone +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0003645 ! metacarpal bone of digit 1 +relationship: part_of UBERON:0003645 ! metacarpal bone of digit 1 + +[Term] +id: UBERON:0004392 +name: epiphysis of second metacarpal bone +def: "An epiphysis that is part of a metacarpal bone of digit 2 [Automatically generated definition]." [OBOL:automatic] +synonym: "metacarpal 2 epiphysis" EXACT [] +synonym: "second metacarpal bone epiphysis" EXACT [FMA:33794] +xref: FMA:33794 +is_a: UBERON:0004390 ! epiphysis of metacarpal bone +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0003646 ! metacarpal bone of digit 2 +relationship: part_of UBERON:0003646 ! metacarpal bone of digit 2 + +[Term] +id: UBERON:0004393 +name: epiphysis of third metacarpal bone +def: "An epiphysis that is part of a metacarpal bone of digit 3 [Automatically generated definition]." [OBOL:automatic] +synonym: "metacarpal 3 epiphysis" EXACT [] +synonym: "third metacarpal bone epiphysis" EXACT [FMA:86328] +xref: FMA:86328 +is_a: UBERON:0004390 ! epiphysis of metacarpal bone +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0003647 ! metacarpal bone of digit 3 +relationship: part_of UBERON:0003647 ! metacarpal bone of digit 3 + +[Term] +id: UBERON:0004394 +name: epiphysis of fourth metacarpal bone +def: "An epiphysis that is part of a metacarpal bone of digit 4 [Automatically generated definition]." [OBOL:automatic] +synonym: "fourth metacarpal bone epiphysis" EXACT [FMA:86329] +synonym: "metacarpal 4 epiphysis" EXACT [] +xref: FMA:86329 +is_a: UBERON:0004390 ! epiphysis of metacarpal bone +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0003648 ! metacarpal bone of digit 4 +relationship: part_of UBERON:0003648 ! metacarpal bone of digit 4 + +[Term] +id: UBERON:0004395 +name: epiphysis of first metatarsal bone +def: "An epiphysis that is part of a metatarsal bone of digit 1 [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "first metatarsal bone epiphysis" EXACT [FMA:33815] +synonym: "metatarsal 1 epiphysis" EXACT [] +xref: FMA:33815 +is_a: UBERON:0004389 ! epiphysis of metatarsal bone +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0003650 ! metatarsal bone of digit 1 +relationship: part_of UBERON:0003650 ! metatarsal bone of digit 1 + +[Term] +id: UBERON:0004396 +name: epiphysis of second metatarsal bone +def: "An epiphysis that is part of a metatarsal bone of digit 2 [Automatically generated definition]." [OBOL:automatic] +synonym: "metatarsal 2 epiphysis" EXACT [] +synonym: "second metatarsal bone epiphysis" EXACT [FMA:33816] +xref: FMA:33816 +is_a: UBERON:0004389 ! epiphysis of metatarsal bone +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0003651 ! metatarsal bone of digit 2 +relationship: part_of UBERON:0003651 ! metatarsal bone of digit 2 + +[Term] +id: UBERON:0004397 +name: epiphysis of third metatarsal bone +def: "An epiphysis that is part of a metatarsal bone of digit 3 [Automatically generated definition]." [OBOL:automatic] +synonym: "metatarsal 3 epiphysis" EXACT [] +synonym: "third metatarsal bone epiphysis" EXACT [FMA:86313] +xref: FMA:86313 +is_a: UBERON:0004389 ! epiphysis of metatarsal bone +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0003652 ! metatarsal bone of digit 3 +relationship: part_of UBERON:0003652 ! metatarsal bone of digit 3 + +[Term] +id: UBERON:0004398 +name: epiphysis of fourth metatarsal bone +def: "An epiphysis that is part of a metatarsal bone of digit 4 [Automatically generated definition]." [OBOL:automatic] +synonym: "fourth metatarsal bone epiphysis" EXACT [FMA:86314] +synonym: "metatarsal 4 epiphysis" EXACT [] +xref: FMA:86314 +is_a: UBERON:0004389 ! epiphysis of metatarsal bone +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0003653 ! metatarsal bone of digit 4 +relationship: part_of UBERON:0003653 ! metatarsal bone of digit 4 + +[Term] +id: UBERON:0004399 +name: epiphysis of fifth metatarsal bone +def: "An epiphysis that is part of a metatarsal bone of digit 5 [Automatically generated definition]." [OBOL:automatic] +synonym: "fifth metatarsal bone epiphysis" EXACT [FMA:86315] +synonym: "metatarsal 5 epiphysis" EXACT [] +xref: FMA:86315 +is_a: UBERON:0004389 ! epiphysis of metatarsal bone +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0003654 ! metatarsal bone of digit 5 +relationship: part_of UBERON:0003654 ! metatarsal bone of digit 5 + +[Term] +id: UBERON:0004400 +name: bone tissue of epiphysis +def: "A portion of bone tissue that is part of a epiphysis [Automatically generated definition]." [OBOL:automatic] +xref: FMA:241364 +is_a: UBERON:0005808 ! bone tissue of long bone +intersection_of: UBERON:0002481 ! bone tissue +intersection_of: part_of UBERON:0001437 ! epiphysis +relationship: part_of UBERON:0001437 ! epiphysis + +[Term] +id: UBERON:0004401 +name: bone tissue of distal epiphysis +def: "A portion of bone tissue that is part of a distal epiphysis [Automatically generated definition]." [OBOL:automatic] +xref: FMA:241374 +is_a: UBERON:0004400 ! bone tissue of epiphysis +intersection_of: UBERON:0002481 ! bone tissue +intersection_of: part_of UBERON:0004379 ! distal epiphysis +relationship: part_of UBERON:0004379 ! distal epiphysis + +[Term] +id: UBERON:0004402 +name: bone tissue of proximal epiphysis +def: "A portion of bone tissue that is part of a proximal epiphysis [Automatically generated definition]." [OBOL:automatic] +xref: FMA:241372 +is_a: UBERON:0004400 ! bone tissue of epiphysis +intersection_of: UBERON:0002481 ! bone tissue +intersection_of: part_of UBERON:0004380 ! proximal epiphysis +relationship: part_of UBERON:0004380 ! proximal epiphysis + +[Term] +id: UBERON:0004403 +name: periosteum of epiphysis +def: "A periosteum that is part of a epiphysis [Automatically generated definition]." [OBOL:automatic] +synonym: "epiphysis periosteum" EXACT [FMA:32687] +xref: FMA:32687 +is_a: UBERON:0016896 ! periosteum of long bone +intersection_of: UBERON:0002515 ! periosteum +intersection_of: part_of UBERON:0001437 ! epiphysis +relationship: part_of UBERON:0001437 ! epiphysis + +[Term] +id: UBERON:0004404 +name: distal epiphysis of humerus +def: "A distal epiphysis that is part of a humerus [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "distal end of humerus" EXACT [FMA:32826] +synonym: "lower end of humerus" EXACT [FMA:32826] +xref: FMA:32826 +xref: http://www.snomedbrowser.com/Codes/Details/310655007 +is_a: UBERON:0004379 ! distal epiphysis +is_a: UBERON:0004382 ! epiphysis of humerus +intersection_of: UBERON:0004379 ! distal epiphysis +intersection_of: part_of UBERON:0000976 ! humerus + +[Term] +id: UBERON:0004405 +name: distal epiphysis of tibia +def: "A distal epiphysis that is part of a tibia [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "distal end of tibia" EXACT [FMA:33116] +synonym: "lower end of tibia" EXACT [FMA:33116] +xref: FMA:33116 +xref: http://en.wikipedia.org/wiki/Lower_extremity_of_tibia +xref: http://www.snomedbrowser.com/Codes/Details/302527001 +is_a: UBERON:0004379 ! distal epiphysis +is_a: UBERON:0004383 ! epiphysis of tibia +intersection_of: UBERON:0004379 ! distal epiphysis +intersection_of: part_of UBERON:0000979 ! tibia + +[Term] +id: UBERON:0004406 +name: distal epiphysis of femur +def: "A distal epiphysis that is part of a femur [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "distal femoral epiphysis" EXACT [https://orcid.org/0000-0002-6601-2165, OBOL:automatic] +synonym: "distal head of femur" RELATED [AAO:0000893] +xref: AAO:0000893 +xref: FMA:32844 +xref: http://www.snomedbrowser.com/Codes/Details/280016000 +is_a: UBERON:0004379 ! distal epiphysis +is_a: UBERON:0004384 ! epiphysis of femur +intersection_of: UBERON:0004379 ! distal epiphysis +intersection_of: part_of UBERON:0000981 ! femur + +[Term] +id: UBERON:0004407 +name: distal epiphysis of radius +def: "A distal epiphysis that is part of a radius [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "distal end of radius" EXACT [FMA:33776] +synonym: "lower end of radius" EXACT [FMA:33776] +xref: FMA:33776 +xref: http://en.wikipedia.org/wiki/Lower_extremity_of_radius +xref: http://www.snomedbrowser.com/Codes/Details/280013008 +is_a: UBERON:0004379 ! distal epiphysis +is_a: UBERON:0004385 ! epiphysis of radius +intersection_of: UBERON:0004379 ! distal epiphysis +intersection_of: part_of UBERON:0001423 ! radius bone + +[Term] +id: UBERON:0004408 +name: distal epiphysis of ulna +def: "A distal epiphysis that is part of a ulna [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "distal end of ulna" EXACT [FMA:33754] +synonym: "lower end of ulna" EXACT [FMA:33754] +xref: FMA:33754 +xref: http://www.snomedbrowser.com/Codes/Details/302521000 +is_a: UBERON:0004379 ! distal epiphysis +is_a: UBERON:0004386 ! epiphysis of ulna +intersection_of: UBERON:0004379 ! distal epiphysis +intersection_of: part_of UBERON:0001424 ! ulna + +[Term] +id: UBERON:0004409 +name: distal epiphysis of phalanx of manus +def: "A distal epiphysis that is part of a phalanx of manus [Automatically generated definition]." [OBOL:automatic] +synonym: "distal end of phalanx of hand" RELATED [FMA:226577] +synonym: "distal epiphysis of phalanx of finger" EXACT [] +synonym: "distal epiphysis of phalanx of hand" RELATED [FMA:226577] +synonym: "head of phalanx of finger" RELATED [FMA:226577] +synonym: "head of phalanx of hand" RELATED [FMA:226577] +synonym: "ungual tuberosity of distal phalanx of finger" RELATED [FMA:226577] +xref: FMA:226577 +xref: http://www.snomedbrowser.com/Codes/Details/272707006 +is_a: UBERON:0004387 ! epiphysis of phalanx of manus +is_a: UBERON:0004448 ! distal epiphysis of phalanx +intersection_of: UBERON:0004379 ! distal epiphysis +intersection_of: part_of UBERON:0001436 ! phalanx of manus + +[Term] +id: UBERON:0004410 +name: distal epiphysis of fibula +def: "A distal epiphysis that is part of a fibula [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "distal end of fibula" EXACT [FMA:33732] +synonym: "lower end of fibula" EXACT [FMA:33732] +xref: FMA:33732 +xref: http://www.snomedbrowser.com/Codes/Details/129111008 +xref: http://www.snomedbrowser.com/Codes/Details/280018004 +is_a: UBERON:0004379 ! distal epiphysis +is_a: UBERON:0004388 ! epiphysis of fibula +intersection_of: UBERON:0004379 ! distal epiphysis +intersection_of: part_of UBERON:0001446 ! fibula + +[Term] +id: UBERON:0004411 +name: proximal epiphysis of humerus +def: "The upper extremity of the humerus (proximal humerus) consists of a large rounded head joined to the body by a constricted portion called the neck, and two eminences, the greater and lesser tubercles." [http://en.wikipedia.org/wiki/Upper_extremity_of_humerus] +subset: pheno_slim +synonym: "head of the humerus" RELATED [http://en.wikipedia.org/wiki/Upper_extremity_of_humerus] +synonym: "humeral head" RELATED [http://en.wikipedia.org/wiki/Upper_extremity_of_humerus] +synonym: "proximal end of humerus" EXACT [FMA:23362] +synonym: "proximal humeral epiphysis" EXACT [https://orcid.org/0000-0002-6601-2165, OBOL:automatic] +synonym: "proximal humerus" RELATED [http://en.wikipedia.org/wiki/Upper_extremity_of_humerus] +synonym: "upper end of humerus" EXACT [FMA:23362] +synonym: "upper extremity of humerus" RELATED [http://en.wikipedia.org/wiki/Upper_extremity_of_humerus] +xref: FMA:23362 +xref: http://en.wikipedia.org/wiki/Upper_extremity_of_humerus +xref: http://www.snomedbrowser.com/Codes/Details/280028008 +is_a: UBERON:0004380 ! proximal epiphysis +is_a: UBERON:0004382 ! epiphysis of humerus +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0000976 ! humerus + +[Term] +id: UBERON:0004412 +name: proximal epiphysis of femur +def: "A proximal epiphysis that is part of a femur [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "capital femoral epiphysis" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "proximal femoral epiphysis" EXACT [https://orcid.org/0000-0002-6601-2165, OBOL:automatic] +xref: FMA:32841 +xref: http://www.snomedbrowser.com/Codes/Details/244702009 +is_a: UBERON:0004380 ! proximal epiphysis +is_a: UBERON:0004384 ! epiphysis of femur +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0000981 ! femur + +[Term] +id: UBERON:0004413 +name: proximal epiphysis of radius +def: "A proximal epiphysis that is part of a radius [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "proximal end of radius" EXACT [FMA:39780] +synonym: "proximal radial epiphysis" EXACT [https://orcid.org/0000-0002-6601-2165, OBOL:automatic] +synonym: "upper end of radius" EXACT [FMA:39780] +xref: FMA:39780 +xref: http://en.wikipedia.org/wiki/Upper_extremity_of_radius +xref: http://www.snomedbrowser.com/Codes/Details/280029000 +is_a: UBERON:0004380 ! proximal epiphysis +is_a: UBERON:0004385 ! epiphysis of radius +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0001423 ! radius bone + +[Term] +id: UBERON:0004414 +name: proximal epiphysis of phalanx of manus +def: "A proximal epiphysis that is part of a phalanx of manus [Automatically generated definition]." [OBOL:automatic] +synonym: "basal epiphysis of phalanx of finger" EXACT [FMA:226482] +synonym: "base of phalanx of finger" EXACT [FMA:226482] +synonym: "basis phalangis manus" EXACT LATIN [FMA:226482, FMA:TA] +synonym: "proximal epiphysis of phalanx of finger" EXACT [] +synonym: "proximal epiphysis of phalanx of hand" RELATED [FMA:226482] +xref: FMA:226482 +xref: http://www.snomedbrowser.com/Codes/Details/272704004 +is_a: UBERON:0004387 ! epiphysis of phalanx of manus +is_a: UBERON:0004447 ! proximal epiphysis of phalanx +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0001436 ! phalanx of manus + +[Term] +id: UBERON:0004415 +name: proximal epiphysis of metatarsal bone +def: "A proximal epiphysis that is part of a metatarsal bone [Automatically generated definition]." [OBOL:automatic] +synonym: "base of metatarsal bone" EXACT [FMA:33817] +synonym: "basis ossis metatarsi" EXACT LATIN [FMA:33817, FMA:TA] +synonym: "proximal end of metatarsal bone" EXACT [FMA:33817] +synonym: "upper end of metatarsal bone" EXACT [FMA:33817] +xref: FMA:33817 +xref: http://www.snomedbrowser.com/Codes/Details/119545008 +is_a: UBERON:0004380 ! proximal epiphysis +is_a: UBERON:0004389 ! epiphysis of metatarsal bone +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0001448 ! metatarsal bone + +[Term] +id: UBERON:0004416 +name: proximal epiphysis of metacarpal bone +def: "A proximal epiphysis that is part of a metacarpal bone [Automatically generated definition]." [OBOL:automatic] +synonym: "base of metacarpal bone" EXACT [FMA:33795] +synonym: "basis ossis metacarpi" EXACT LATIN [FMA:33795, FMA:TA] +synonym: "metacarpal bone base" EXACT [FMA:33795] +synonym: "proximal end of metacarpal bone" EXACT [FMA:33795] +synonym: "upper end of metacarpal bone" EXACT [FMA:33795] +xref: FMA:33795 +xref: http://www.snomedbrowser.com/Codes/Details/272695001 +is_a: UBERON:0004380 ! proximal epiphysis +is_a: UBERON:0004390 ! epiphysis of metacarpal bone +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0002374 ! metacarpal bone + +[Term] +id: UBERON:0004417 +name: proximal epiphysis of phalanx of manual digit 1 +def: "A proximal epiphysis that is part of a manual digit 1 phalanx [Automatically generated definition]." [OBOL:automatic] +synonym: "basal epiphysis of phalanx of thumb" EXACT [FMA:37489] +synonym: "base of phalanx of first digit of hand" EXACT [FMA:37489] +synonym: "base of phalanx of thumb" EXACT [FMA:37489] +synonym: "proximal epiphysis of phalanx of manual digit 1" EXACT [] +synonym: "proximal epiphysis of phalanx of manual digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal epiphysis of phalanx of thumb" NARROW SENSU [FMA:37489, NCBITaxon:9606] +xref: FMA:37489 +xref: http://www.snomedbrowser.com/Codes/Details/272700008 +is_a: UBERON:0004414 ! proximal epiphysis of phalanx of manus +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0003620 ! manual digit 1 phalanx +relationship: part_of UBERON:0003620 ! manual digit 1 phalanx + +[Term] +id: UBERON:0004418 +name: proximal epiphysis of phalanx of manual digit 2 +def: "A proximal epiphysis that is part of a manual digit 2 phalanx [Automatically generated definition]." [OBOL:automatic] +synonym: "basal epiphysis of phalanx of index finger" EXACT [FMA:37498] +synonym: "base of phalanx of index finger" EXACT [FMA:37498] +synonym: "base of phalanx of second digit of hand" EXACT [FMA:37498] +synonym: "base of phalanx of second finger" EXACT [FMA:37498] +synonym: "proximal epiphysis of phalanx of index finger" NARROW SENSU [FMA:37498, NCBITaxon:9606] +synonym: "proximal epiphysis of phalanx of manual digit 2" EXACT [] +synonym: "proximal epiphysis of phalanx of manual digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: FMA:37498 +xref: http://www.snomedbrowser.com/Codes/Details/368307004 +is_a: UBERON:0004414 ! proximal epiphysis of phalanx of manus +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0003636 ! manual digit 2 phalanx +relationship: part_of UBERON:0003636 ! manual digit 2 phalanx + +[Term] +id: UBERON:0004419 +name: proximal epiphysis of phalanx of manual digit 3 +def: "A proximal epiphysis that is part of a manual digit 3 phalanx [Automatically generated definition]." [OBOL:automatic] +synonym: "basal epiphysis of phalanx of middle finger" EXACT [FMA:37510] +synonym: "base of phalanx of middle finger" EXACT [FMA:37510] +synonym: "base of phalanx of third digit of hand" EXACT [FMA:37510] +synonym: "base of phalanx of third finger" EXACT [FMA:37510] +synonym: "proximal epiphysis of phalanx of manual digit 3" EXACT [] +synonym: "proximal epiphysis of phalanx of manual digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal epiphysis of phalanx of middle finger" NARROW SENSU [FMA:37510, NCBITaxon:9606] +xref: FMA:37510 +xref: http://www.snomedbrowser.com/Codes/Details/181997000 +is_a: UBERON:0004414 ! proximal epiphysis of phalanx of manus +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0003637 ! manual digit 3 phalanx +relationship: part_of UBERON:0003637 ! manual digit 3 phalanx + +[Term] +id: UBERON:0004420 +name: proximal epiphysis of phalanx of manual digit 4 +def: "A proximal epiphysis that is part of a manual digit 4 phalanx [Automatically generated definition]." [OBOL:automatic] +synonym: "basal epiphysis of phalanx of ring finger" EXACT [FMA:37522] +synonym: "base of phalanx of fourth digit of hand" EXACT [FMA:37522] +synonym: "base of phalanx of fourth finger" EXACT [FMA:37522] +synonym: "base of phalanx of ring finger" EXACT [FMA:37522] +synonym: "proximal epiphysis of phalanx of manual digit 4" EXACT [] +synonym: "proximal epiphysis of phalanx of manual digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal epiphysis of phalanx of ring finger" NARROW SENSU [FMA:37522, NCBITaxon:9606] +xref: FMA:37522 +xref: http://www.snomedbrowser.com/Codes/Details/368337008 +is_a: UBERON:0004414 ! proximal epiphysis of phalanx of manus +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0003638 ! manual digit 4 phalanx +relationship: part_of UBERON:0003638 ! manual digit 4 phalanx + +[Term] +id: UBERON:0004421 +name: proximal epiphysis of phalanx of manual digit 5 +def: "A proximal epiphysis that is part of a manual digit 5 phalanx [Automatically generated definition]." [OBOL:automatic] +synonym: "basal epiphysis of phalanx of fifth finger" EXACT [FMA:37534] +synonym: "basal epiphysis of phalanx of little finger" EXACT [FMA:37534] +synonym: "base of phalanx of fifth digit of hand" EXACT [FMA:37534] +synonym: "base of phalanx of fifth finger" EXACT [FMA:37534] +synonym: "base of phalanx of little finger" EXACT [FMA:37534] +synonym: "proximal epiphysis of phalanx of little finger" NARROW SENSU [FMA:37534, NCBITaxon:9606] +synonym: "proximal epiphysis of phalanx of manual digit 5" EXACT [] +synonym: "proximal epiphysis of phalanx of manual digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: FMA:37534 +xref: http://www.snomedbrowser.com/Codes/Details/368351008 +is_a: UBERON:0004414 ! proximal epiphysis of phalanx of manus +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0003639 ! manual digit 5 phalanx +relationship: part_of UBERON:0003639 ! manual digit 5 phalanx + +[Term] +id: UBERON:0004422 +name: proximal epiphysis of first metacarpal bone +def: "A proximal epiphysis that is part of a metacarpal bone of digit 1 [Automatically generated definition]." [OBOL:automatic] +synonym: "base of first metacarpal bone" EXACT [FMA:42788] +synonym: "first metacarpal bone base" EXACT [FMA:42788] +synonym: "proximal epiphysis of metacarpal 1" EXACT [] +xref: FMA:42788 +xref: http://www.snomedbrowser.com/Codes/Details/181978000 +is_a: UBERON:0004391 ! epiphysis of first metacarpal bone +is_a: UBERON:0004416 ! proximal epiphysis of metacarpal bone +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0003645 ! metacarpal bone of digit 1 + +[Term] +id: UBERON:0004423 +name: proximal epiphysis of second metacarpal bone +def: "A proximal epiphysis that is part of a metacarpal bone of digit 2 [Automatically generated definition]." [OBOL:automatic] +synonym: "base of second metacarpal bone" EXACT [FMA:42791] +synonym: "proximal end of second metacarpal bone" EXACT [FMA:42791] +synonym: "proximal epiphysis of metacarpal 2" EXACT [] +synonym: "second metacarpal bone base" EXACT [FMA:42791] +xref: FMA:42791 +xref: http://www.snomedbrowser.com/Codes/Details/263461004 +is_a: UBERON:0004392 ! epiphysis of second metacarpal bone +is_a: UBERON:0004416 ! proximal epiphysis of metacarpal bone +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0003646 ! metacarpal bone of digit 2 + +[Term] +id: UBERON:0004424 +name: proximal epiphysis of third metacarpal bone +def: "A proximal epiphysis that is part of a metacarpal bone of digit 3 [Automatically generated definition]." [OBOL:automatic] +synonym: "base of third metacarpal bone" EXACT [FMA:42794] +synonym: "proximal end of third metacarpal bone" EXACT [FMA:42794] +synonym: "proximal epiphysis of metacarpal 3" EXACT [] +synonym: "third metacarpal bone base" EXACT [FMA:42794] +xref: FMA:42794 +xref: http://www.snomedbrowser.com/Codes/Details/263465008 +is_a: UBERON:0004393 ! epiphysis of third metacarpal bone +is_a: UBERON:0004416 ! proximal epiphysis of metacarpal bone +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0003647 ! metacarpal bone of digit 3 + +[Term] +id: UBERON:0004425 +name: proximal epiphysis of fourth metacarpal bone +def: "A proximal epiphysis that is part of a metacarpal bone of digit 4 [Automatically generated definition]." [OBOL:automatic] +synonym: "base of fourth metacarpal bone" EXACT [FMA:42797] +synonym: "fourth metacarpal bone base" EXACT [FMA:42797] +synonym: "proximal end of fourth metacarpal bone" EXACT [FMA:42797] +synonym: "proximal epiphysis of metacarpal 4" EXACT [] +xref: FMA:42797 +xref: http://www.snomedbrowser.com/Codes/Details/263469002 +is_a: UBERON:0004394 ! epiphysis of fourth metacarpal bone +is_a: UBERON:0004416 ! proximal epiphysis of metacarpal bone +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0003648 ! metacarpal bone of digit 4 + +[Term] +id: UBERON:0004426 +name: proximal epiphysis of fifth metacarpal bone +def: "A proximal epiphysis that is part of a metacarpal bone of digit 5 [Automatically generated definition]." [OBOL:automatic] +synonym: "base of fifth metacarpal bone" EXACT [FMA:42800] +synonym: "fifth metacarpal bone base" EXACT [FMA:42800] +synonym: "proximal end of fifth metacarpal bone" EXACT [FMA:42800] +synonym: "proximal epiphysis of metacarpal 5" EXACT [] +xref: FMA:42800 +xref: http://www.snomedbrowser.com/Codes/Details/263473004 +is_a: UBERON:0004416 ! proximal epiphysis of metacarpal bone +is_a: UBERON:0011104 ! epiphysis of fifth metacarpal bone +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0003649 ! metacarpal bone of digit 5 + +[Term] +id: UBERON:0004427 +name: proximal epiphysis of first metatarsal bone +def: "A proximal epiphysis that is part of a metatarsal bone of digit 1 [Automatically generated definition]." [OBOL:automatic] +synonym: "base of first metatarsal bone" EXACT [FMA:42963] +synonym: "proximal end of first metatarsal bone" EXACT [FMA:42963] +synonym: "proximal epiphysis of metatarsal 1" EXACT [] +xref: FMA:42963 +xref: http://www.snomedbrowser.com/Codes/Details/182124002 +is_a: UBERON:0004395 ! epiphysis of first metatarsal bone +is_a: UBERON:0004415 ! proximal epiphysis of metatarsal bone +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0003650 ! metatarsal bone of digit 1 + +[Term] +id: UBERON:0004428 +name: proximal epiphysis of second metatarsal bone +def: "A proximal epiphysis that is part of a metatarsal bone of digit 2 [Automatically generated definition]." [OBOL:automatic] +synonym: "base of second metatarsal bone" EXACT [FMA:42964] +synonym: "proximal end of second metatarsal bone" EXACT [FMA:42964] +synonym: "proximal epiphysis of metatarsal 2" EXACT [] +xref: FMA:42964 +xref: http://www.snomedbrowser.com/Codes/Details/182130002 +is_a: UBERON:0004396 ! epiphysis of second metatarsal bone +is_a: UBERON:0004415 ! proximal epiphysis of metatarsal bone +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0003651 ! metatarsal bone of digit 2 + +[Term] +id: UBERON:0004429 +name: proximal epiphysis of third metatarsal bone +def: "A proximal epiphysis that is part of a metatarsal bone of digit 3 [Automatically generated definition]." [OBOL:automatic] +synonym: "base of third metatarsal bone" EXACT [FMA:42965] +synonym: "proximal end of third metatarsal bone" EXACT [FMA:42965] +synonym: "proximal epiphysis of metatarsal 3" EXACT [] +xref: FMA:42965 +xref: http://www.snomedbrowser.com/Codes/Details/182135007 +is_a: UBERON:0004397 ! epiphysis of third metatarsal bone +is_a: UBERON:0004415 ! proximal epiphysis of metatarsal bone +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0003652 ! metatarsal bone of digit 3 + +[Term] +id: UBERON:0004430 +name: proximal epiphysis of fourth metatarsal bone +def: "A proximal epiphysis that is part of a metatarsal bone of digit 4 [Automatically generated definition]." [OBOL:automatic] +synonym: "base of fourth metatarsal bone" EXACT [FMA:42966] +synonym: "proximal end of fourth metatarsal bone" EXACT [FMA:42966] +synonym: "proximal epiphysis of metatarsal 4" EXACT [] +xref: FMA:42966 +xref: http://www.snomedbrowser.com/Codes/Details/182140004 +is_a: UBERON:0004398 ! epiphysis of fourth metatarsal bone +is_a: UBERON:0004415 ! proximal epiphysis of metatarsal bone +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0003653 ! metatarsal bone of digit 4 + +[Term] +id: UBERON:0004431 +name: proximal epiphysis of fifth metatarsal bone +def: "A proximal epiphysis that is part of a metatarsal bone of digit 5 [Automatically generated definition]." [OBOL:automatic] +synonym: "base of fifth metatarsal bone" EXACT [FMA:42967] +synonym: "proximal end of fifth metatarsal bone" EXACT [FMA:42967] +synonym: "proximal epiphysis of metatarsal 5" EXACT [] +xref: FMA:42967 +xref: http://www.snomedbrowser.com/Codes/Details/182145009 +is_a: UBERON:0004399 ! epiphysis of fifth metatarsal bone +is_a: UBERON:0004415 ! proximal epiphysis of metatarsal bone +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0003654 ! metatarsal bone of digit 5 + +[Term] +id: UBERON:0004432 +name: proximal epiphysis of distal phalanx of manual digit 2 +def: "A proximal epiphysis that is part of a distal phalanx of manual digit 2 [Automatically generated definition]." [OBOL:automatic] +synonym: "basal epiphysis of distal phalanx of index finger" EXACT [FMA:37505] +synonym: "base of distal phalanx of index finger" EXACT [FMA:37505] +synonym: "base of distal phalanx of second digit of hand" EXACT [FMA:37505] +synonym: "base of distal phalanx of second finger" EXACT [FMA:37505] +synonym: "proximal epiphysis of distal phalanx of index finger" NARROW SENSU [FMA:37505, NCBITaxon:9606] +synonym: "proximal epiphysis of distal phalanx of manual digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: FMA:37505 +xref: http://www.snomedbrowser.com/Codes/Details/263445001 +is_a: UBERON:0004418 ! proximal epiphysis of phalanx of manual digit 2 +is_a: UBERON:0011979 ! epiphysis of distal phalanx of manus +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0004311 ! distal phalanx of manual digit 2 +relationship: part_of UBERON:0004311 ! distal phalanx of manual digit 2 + +[Term] +id: UBERON:0004433 +name: proximal epiphysis of distal phalanx of manual digit 3 +def: "A proximal epiphysis that is part of a distal phalanx of manual digit 3 [Automatically generated definition]." [OBOL:automatic] +synonym: "base of distal phalanx of middle finger" EXACT [FMA:37517] +synonym: "base of distal phalanx of third digit of hand" EXACT [FMA:37517] +synonym: "base of distal phalanx of third finger" EXACT [FMA:37517] +synonym: "proximal epiphysis of distal phalanx of manual digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal epiphysis of distal phalanx of middle finger" NARROW SENSU [FMA:37517, NCBITaxon:9606] +xref: FMA:37517 +xref: http://www.snomedbrowser.com/Codes/Details/263446000 +is_a: UBERON:0004419 ! proximal epiphysis of phalanx of manual digit 3 +is_a: UBERON:0011979 ! epiphysis of distal phalanx of manus +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0004312 ! distal phalanx of manual digit 3 +relationship: part_of UBERON:0004312 ! distal phalanx of manual digit 3 + +[Term] +id: UBERON:0004434 +name: proximal epiphysis of distal phalanx of manual digit 4 +def: "A proximal epiphysis that is part of a distal phalanx of manual digit 4 [Automatically generated definition]." [OBOL:automatic] +synonym: "basal epiphysis of distal phalanx of fourth finger" EXACT [FMA:37529] +synonym: "basal epiphysis of distal phalanx of ring finger" EXACT [FMA:37529] +synonym: "base of distal phalanx of fourth digit of hand" EXACT [FMA:37529] +synonym: "base of distal phalanx of fourth finger" EXACT [FMA:37529] +synonym: "base of distal phalanx of ring finger" EXACT [FMA:37529] +synonym: "proximal epiphysis of distal phalanx of manual digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal epiphysis of distal phalanx of ring finger" NARROW SENSU [FMA:37529, NCBITaxon:9606] +xref: FMA:37529 +xref: http://www.snomedbrowser.com/Codes/Details/263447009 +is_a: UBERON:0004420 ! proximal epiphysis of phalanx of manual digit 4 +is_a: UBERON:0011979 ! epiphysis of distal phalanx of manus +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0004313 ! distal phalanx of manual digit 4 +relationship: part_of UBERON:0004313 ! distal phalanx of manual digit 4 + +[Term] +id: UBERON:0004435 +name: proximal epiphysis of distal phalanx of manual digit 5 +def: "A proximal epiphysis that is part of a distal phalanx of manual digit 5 [Automatically generated definition]." [OBOL:automatic] +synonym: "basal epiphysis of distal phalanx of fifth finger" EXACT [FMA:37541] +synonym: "basal epiphysis of distal phalanx of little finger" EXACT [FMA:37541] +synonym: "base of distal phalanx of fifth digit of hand" EXACT [FMA:37541] +synonym: "base of distal phalanx of fifth finger" EXACT [FMA:37541] +synonym: "base of distal phalanx of little finger" EXACT [FMA:37541] +synonym: "proximal epiphysis of distal phalanx of little finger" NARROW SENSU [FMA:37541, NCBITaxon:9606] +synonym: "proximal epiphysis of distal phalanx of manual digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: FMA:37541 +xref: http://www.snomedbrowser.com/Codes/Details/263448004 +is_a: UBERON:0004421 ! proximal epiphysis of phalanx of manual digit 5 +is_a: UBERON:0011979 ! epiphysis of distal phalanx of manus +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0004314 ! distal phalanx of manual digit 5 +relationship: part_of UBERON:0004314 ! distal phalanx of manual digit 5 + +[Term] +id: UBERON:0004436 +name: proximal epiphysis of middle phalanx of manual digit 2 +def: "A proximal epiphysis that is part of a middle phalanx of manual digit 2 [Automatically generated definition]." [OBOL:automatic] +synonym: "basal epiphysis of middle phalanx of index finger" EXACT [FMA:37502] +synonym: "base of middle phalanx of index finger" EXACT [FMA:37502] +synonym: "base of middle phalanx of second digit of hand" EXACT [FMA:37502] +synonym: "base of middle phalanx of second finger" EXACT [FMA:37502] +synonym: "proximal epiphysis of middle phalanx of index finger" NARROW SENSU [FMA:37502, NCBITaxon:9606] +synonym: "proximal epiphysis of middle phalanx of manual digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: FMA:37502 +xref: http://www.snomedbrowser.com/Codes/Details/263428006 +is_a: UBERON:0004418 ! proximal epiphysis of phalanx of manual digit 2 +is_a: UBERON:0011978 ! epiphysis of middle phalanx of manus +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0004320 ! middle phalanx of manual digit 2 +relationship: part_of UBERON:0004320 ! middle phalanx of manual digit 2 + +[Term] +id: UBERON:0004437 +name: proximal epiphysis of middle phalanx of manual digit 3 +def: "A proximal epiphysis that is part of a middle phalanx of manual digit 3 [Automatically generated definition]." [OBOL:automatic] +synonym: "basal epiphysis of middle phalanx of middle finger" EXACT [FMA:37514] +synonym: "base of middle phalanx of middle finger" EXACT [FMA:37514] +synonym: "base of middle phalanx of third digit of hand" EXACT [FMA:37514] +synonym: "base of middle phalanx of third finger" EXACT [FMA:37514] +synonym: "proximal epiphysis of middle phalanx of manual digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal epiphysis of middle phalanx of middle finger" NARROW SENSU [FMA:37514, NCBITaxon:9606] +xref: FMA:37514 +xref: http://www.snomedbrowser.com/Codes/Details/263429003 +is_a: UBERON:0004419 ! proximal epiphysis of phalanx of manual digit 3 +is_a: UBERON:0011978 ! epiphysis of middle phalanx of manus +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0004321 ! middle phalanx of manual digit 3 +relationship: part_of UBERON:0004321 ! middle phalanx of manual digit 3 + +[Term] +id: UBERON:0004438 +name: proximal epiphysis of middle phalanx of manual digit 4 +def: "A proximal epiphysis that is part of a middle phalanx of manual digit 4 [Automatically generated definition]." [OBOL:automatic] +synonym: "basal epiphysis of middle phalanx of fourth finger" EXACT [FMA:37526] +synonym: "basal epiphysis of middle phalanx of ring finger" EXACT [FMA:37526] +synonym: "base of middle phalanx of fourth digit of hand" EXACT [FMA:37526] +synonym: "base of middle phalanx of fourth finger" EXACT [FMA:37526] +synonym: "base of middle phalanx of ring finger" EXACT [FMA:37526] +synonym: "proximal epiphysis of middle phalanx of manual digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal epiphysis of middle phalanx of ring finger" NARROW SENSU [FMA:37526, NCBITaxon:9606] +xref: FMA:37526 +xref: http://www.snomedbrowser.com/Codes/Details/263430008 +is_a: UBERON:0004420 ! proximal epiphysis of phalanx of manual digit 4 +is_a: UBERON:0011978 ! epiphysis of middle phalanx of manus +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0004322 ! middle phalanx of manual digit 4 +relationship: part_of UBERON:0004322 ! middle phalanx of manual digit 4 + +[Term] +id: UBERON:0004439 +name: proximal epiphysis of middle phalanx of manual digit 5 +def: "A proximal epiphysis that is part of a middle phalanx of manual digit 5 [Automatically generated definition]." [OBOL:automatic] +synonym: "basal epiphysis of middle phalanx of fifth finger" EXACT [FMA:37538] +synonym: "basal epiphysis of middle phalanx of little finger" EXACT [FMA:37538] +synonym: "base of middle phalanx of fifth digit of hand" EXACT [FMA:37538] +synonym: "base of middle phalanx of fifth finger" EXACT [FMA:37538] +synonym: "base of middle phalanx of little finger" EXACT [FMA:37538] +synonym: "proximal epiphysis of middle phalanx of little finger" NARROW SENSU [FMA:37538, NCBITaxon:9606] +synonym: "proximal epiphysis of middle phalanx of manual digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: FMA:37538 +xref: http://www.snomedbrowser.com/Codes/Details/263431007 +is_a: UBERON:0004421 ! proximal epiphysis of phalanx of manual digit 5 +is_a: UBERON:0011978 ! epiphysis of middle phalanx of manus +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0004323 ! middle phalanx of manual digit 5 +relationship: part_of UBERON:0004323 ! middle phalanx of manual digit 5 + +[Term] +id: UBERON:0004440 +name: proximal epiphysis of proximal phalanx of manual digit 2 +def: "A proximal epiphysis that is part of a proximal phalanx of manual digit 2 [Automatically generated definition]." [OBOL:automatic] +synonym: "base of proximal phalanx of index finger" EXACT [FMA:37499] +synonym: "base of proximal phalanx of second digit of hand" EXACT [FMA:37499] +synonym: "base of proximal phalanx of second finger" EXACT [FMA:37499] +synonym: "proximal epiphysis of proximal phalanx of index finger" NARROW SENSU [FMA:37499, NCBITaxon:9606] +synonym: "proximal epiphysis of proximal phalanx of manual digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: FMA:37499 +xref: http://www.snomedbrowser.com/Codes/Details/263412001 +is_a: UBERON:0004418 ! proximal epiphysis of phalanx of manual digit 2 +is_a: UBERON:0011977 ! epiphysis of proximal phalanx of manus +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0004328 ! proximal phalanx of manual digit 2 +relationship: part_of UBERON:0004328 ! proximal phalanx of manual digit 2 + +[Term] +id: UBERON:0004441 +name: proximal epiphysis of proximal phalanx of manual digit 3 +def: "A proximal epiphysis that is part of a proximal phalanx of manual digit 3 [Automatically generated definition]." [OBOL:automatic] +synonym: "basal epiphysis of proximal phalanx of middle finger" EXACT [FMA:37511] +synonym: "base of proximal phalanx of middle finger" EXACT [FMA:37511] +synonym: "base of proximal phalanx of third digit of hand" EXACT [FMA:37511] +synonym: "base of proximal phalanx of third finger" EXACT [FMA:37511] +synonym: "proximal epiphysis of proximal phalanx of manual digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal epiphysis of proximal phalanx of middle finger" NARROW SENSU [FMA:37511, NCBITaxon:9606] +xref: FMA:37511 +xref: http://www.snomedbrowser.com/Codes/Details/263413006 +is_a: UBERON:0004419 ! proximal epiphysis of phalanx of manual digit 3 +is_a: UBERON:0011977 ! epiphysis of proximal phalanx of manus +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0004329 ! proximal phalanx of manual digit 3 +relationship: part_of UBERON:0004329 ! proximal phalanx of manual digit 3 + +[Term] +id: UBERON:0004442 +name: proximal epiphysis of proximal phalanx of manual digit 4 +def: "A proximal epiphysis that is part of a proximal phalanx of manual digit 4 [Automatically generated definition]." [OBOL:automatic] +synonym: "basal epiphysis of proximal phalanx of fourth finger" EXACT [FMA:37523] +synonym: "basal epiphysis of proximal phalanx of ring finger" EXACT [FMA:37523] +synonym: "base of proximal phalanx of fourth digit of hand" EXACT [FMA:37523] +synonym: "base of proximal phalanx of fourth finger" EXACT [FMA:37523] +synonym: "base of proximal phalanx of ring finger" EXACT [FMA:37523] +synonym: "proximal epiphysis of proximal phalanx of manual digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal epiphysis of proximal phalanx of ring finger" NARROW SENSU [FMA:37523, NCBITaxon:9606] +xref: FMA:37523 +xref: http://www.snomedbrowser.com/Codes/Details/263414000 +is_a: UBERON:0004420 ! proximal epiphysis of phalanx of manual digit 4 +is_a: UBERON:0011977 ! epiphysis of proximal phalanx of manus +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0004330 ! proximal phalanx of manual digit 4 +relationship: part_of UBERON:0004330 ! proximal phalanx of manual digit 4 + +[Term] +id: UBERON:0004443 +name: proximal epiphysis of proximal phalanx of manual digit 5 +def: "A proximal epiphysis that is part of a proximal phalanx of manual digit 5 [Automatically generated definition]." [OBOL:automatic] +synonym: "basal epiphysis of proximal phalanx of little finger" EXACT [FMA:37535] +synonym: "base of proximal phalanx of fifth digit of hand" EXACT [FMA:37535] +synonym: "base of proximal phalanx of fifth finger" EXACT [FMA:37535] +synonym: "base of proximal phalanx of little finger" EXACT [FMA:37535] +synonym: "proximal epiphysis of proximal phalanx of little finger" NARROW SENSU [FMA:37535, NCBITaxon:9606] +synonym: "proximal epiphysis of proximal phalanx of manual digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: FMA:37535 +xref: http://www.snomedbrowser.com/Codes/Details/263415004 +is_a: UBERON:0004421 ! proximal epiphysis of phalanx of manual digit 5 +is_a: UBERON:0011977 ! epiphysis of proximal phalanx of manus +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0004331 ! proximal phalanx of manual digit 5 +relationship: part_of UBERON:0004331 ! proximal phalanx of manual digit 5 + +[Term] +id: UBERON:0004444 +name: proximal epiphysis of distal phalanx of manual digit 1 +def: "A proximal epiphysis that is part of a distal phalanx of manual digit 1 [Automatically generated definition]." [OBOL:automatic] +synonym: "base of distal phalanx of thumb" EXACT [FMA:37493] +synonym: "proximal epiphysis of distal phalanx of manual digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal epiphysis of distal phalanx of thumb" NARROW SENSU [FMA:37493, NCBITaxon:9606] +xref: FMA:37493 +xref: http://www.snomedbrowser.com/Codes/Details/182008001 +is_a: UBERON:0004417 ! proximal epiphysis of phalanx of manual digit 1 +is_a: UBERON:0011979 ! epiphysis of distal phalanx of manus +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0004337 ! distal phalanx of manual digit 1 +relationship: part_of UBERON:0004337 ! distal phalanx of manual digit 1 + +[Term] +id: UBERON:0004445 +name: proximal epiphysis of proximal phalanx of manual digit 1 +def: "A proximal epiphysis that is part of a proximal phalanx of manual digit 1 [Automatically generated definition]." [OBOL:automatic] +synonym: "basal epiphysis of proximal phalanx of thumb" EXACT [FMA:37490] +synonym: "base of proximal phalanx of thumb" EXACT [FMA:37490] +synonym: "proximal epiphysis of proximal phalanx of manual digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal epiphysis of proximal phalanx of thumb" NARROW SENSU [FMA:37490, NCBITaxon:9606] +xref: FMA:37490 +xref: http://www.snomedbrowser.com/Codes/Details/181993001 +is_a: UBERON:0004417 ! proximal epiphysis of phalanx of manual digit 1 +is_a: UBERON:0011977 ! epiphysis of proximal phalanx of manus +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0004338 ! proximal phalanx of manual digit 1 +relationship: part_of UBERON:0004338 ! proximal phalanx of manual digit 1 + +[Term] +id: UBERON:0004446 +name: epiphysis of phalanx +def: "An epiphysis that is part of a phalanx [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +xref: http://www.snomedbrowser.com/Codes/Details/280033007 +is_a: UBERON:0001437 ! epiphysis +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0003221 ! phalanx +relationship: part_of UBERON:0003221 ! phalanx + +[Term] +id: UBERON:0004447 +name: proximal epiphysis of phalanx +def: "A proximal epiphysis that is part of a phalanx [Automatically generated definition]." [OBOL:automatic] +is_a: UBERON:0004380 ! proximal epiphysis +is_a: UBERON:0004446 ! epiphysis of phalanx +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0003221 ! phalanx + +[Term] +id: UBERON:0004448 +name: distal epiphysis of phalanx +def: "A distal epiphysis that is part of a phalanx [Automatically generated definition]." [OBOL:automatic] +synonym: "head of phalanx" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/110520001 +is_a: UBERON:0004379 ! distal epiphysis +is_a: UBERON:0004446 ! epiphysis of phalanx +intersection_of: UBERON:0004379 ! distal epiphysis +intersection_of: part_of UBERON:0003221 ! phalanx + +[Term] +id: UBERON:0004449 +name: cerebral artery +def: "One of three main pairs of arteries and their branches, which irrigate the cerebrum of the brain." [http://en.wikipedia.org/wiki/Cerebral_artery] +subset: pheno_slim +xref: AAO:0010493 +xref: BTO:0005205 +xref: CALOHA:TS-0126 +xref: Cerebral:artery +xref: EHDAA2:0000233 +xref: EHDAA:5294 +xref: EMAPA:18613 +xref: GAID:484 +xref: http://linkedlifedata.com/resource/umls/id/C0007770 +xref: http://www.snomedbrowser.com/Codes/Details/181308008 +xref: MA:0002562 +xref: MESH:D002536 +xref: NCIT:C12691 +xref: UMLS:C0007770 {source="ncithesaurus:Cerebral_Artery"} +xref: XAO:0000367 +is_a: UBERON:0004573 ! systemic artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0001893 ! telencephalon +relationship: part_of UBERON:0003709 ! circle of Willis +relationship: supplies UBERON:0001893 ! telencephalon + +[Term] +id: UBERON:0004450 +name: gastric vein +def: "A laterally paired vein that drains blood away from the lesser curvature of the stomach." [ncithesaurus:Gastric_Vein, UBERON:cjm] +synonym: "vena gastrica" EXACT LATIN [http://en.wikipedia.org/wiki/Gastric_vein] +xref: AAO:0011046 +xref: EMAPA:37146 {source="MA:th"} +xref: Gastric:vein +xref: http://linkedlifedata.com/resource/umls/id/C0750610 +xref: http://www.snomedbrowser.com/Codes/Details/281060006 +xref: MA:0002128 +xref: NCIT:C32665 +xref: UMLS:C0750610 {source="ncithesaurus:Gastric_Vein"} +xref: XAO:0000389 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003513 ! trunk blood vessel +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0001163 ! lesser curvature of stomach +relationship: drains UBERON:0001163 ! lesser curvature of stomach +relationship: in_lateral_side_of UBERON:0002100 ! trunk + +[Term] +id: UBERON:0004451 +name: trunk or cervical vertebra +def: "A vertebra in the trunk or cervical region. Includes all cervical, thoracic and lumbar vertebrae, but excludes caudal vertebra." [UBERONREF:0000006] +subset: pheno_slim +synonym: "presacral vertebra" RELATED [MA:0002869] +xref: EMAPA:37722 {source="MA:th"} +xref: MA:0002869 +xref: XAO:0003077 +is_a: UBERON:0002412 ! vertebra +intersection_of: UBERON:0002412 ! vertebra +intersection_of: anterior_to UBERON:0001095 ! caudal vertebra +union_of: UBERON:0002413 ! cervical vertebra +union_of: UBERON:0011677 ! trunk vertebra +relationship: anterior_to UBERON:0001095 ! caudal vertebra + +[Term] +id: UBERON:0004452 +name: carpal region +alt_id: UBERON:0001462 +def: "A mesopodium that is part of a manus. Includes as parts the carpal skeleton and associated tissues[cjm]. The anatomical region surrounding the carpus including the distal parts of the bones of the forearm and the proximal parts of the metacarpus or five metacarpal bones and the series of joints between these bones, thus referred to as wrist joints. This region also includes the carpal tunnel, the anatomical snuff box, the flexor retinaculum, and the extensor retinaculum[WP,unvetted]" [http://en.wikipedia.org/wiki/Wrist, https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: uberon_slim +synonym: "articulatio radiocarpea" RELATED LATIN [http://en.wikipedia.org/wiki/Wrist] +synonym: "carpal limb segment" EXACT [] +synonym: "carpal segment" EXACT [] +synonym: "carpus" RELATED INCONSISTENT [] +synonym: "carpus of fore-paw" NARROW [EMAPA:19122] +synonym: "fore basipodium" EXACT [MA:th] +synonym: "fore mesopodium" EXACT [MA:th] +synonym: "hand mesopodium" EXACT [] +synonym: "manus mesopodium" EXACT [] +synonym: "regio carpalis" EXACT LATIN [FMA:24922, FMA:TA] +synonym: "wrist" EXACT [MA:0000039] +synonym: "wrist region" EXACT [] +xref: EHDAA2:0000218 +xref: EHDAA:5196 +xref: EMAPA:19122 +xref: EMAPA:32784 +xref: FMA:24922 +xref: GAID:59 +xref: galen:Wrist +xref: http://en.wikipedia.org/wiki/Wrist +xref: http://www.snomedbrowser.com/Codes/Details/361289009 +xref: MA:0000039 +xref: MESH:D014953 +xref: NCIT:C111033 +xref: OpenCyc:Mx4rvVjncpwpEbGdrcN5Y29ycA +is_a: UBERON:0006716 ! mesopodium region +is_a: UBERON:0008785 {source="FMA"} ! upper limb segment +intersection_of: UBERON:0006716 ! mesopodium region +intersection_of: part_of UBERON:0002398 ! manus +relationship: distally_connected_to UBERON:0004453 ! metacarpus region +relationship: has_skeleton UBERON:0009880 ! carpal skeleton +relationship: part_of UBERON:0002398 ! manus +relationship: proximally_connected_to UBERON:0002386 ! forelimb zeugopod + +[Term] +id: UBERON:0004453 +name: metacarpus region +def: "A metapodium region that is part of a manus." [OBOL:automatic] +subset: pheno_slim +synonym: "distal segment of hand proper" EXACT [FMA:24925] +synonym: "forelimb cannon region" NARROW [http://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] +synonym: "forelimb equine cannon region" NARROW [http://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] +synonym: "metacarpal part of hand" EXACT [FMA:24925] +synonym: "metacarpal part of manus" EXACT [] +synonym: "metacarpal region" EXACT [FMA:24925] +synonym: "metacarpus" EXACT [MA:0000042] +xref: CALOHA:TS-2218 +xref: EMAPA:32654 +xref: FMA:24925 +xref: http://www.snomedbrowser.com/Codes/Details/370638006 +xref: MA:0000042 +is_a: UBERON:0005451 {source="FMA"} ! segment of manus +is_a: UBERON:0009877 ! metapodium region +intersection_of: UBERON:0009877 ! metapodium region +intersection_of: part_of UBERON:0002398 ! manus +relationship: has_skeleton UBERON:0010544 ! metacarpus skeleton +relationship: part_of UBERON:0012141 {source="PHENOSCAPE:ni"} ! manual digitopodium region + +[Term] +id: UBERON:0004454 +name: tarsal region +alt_id: UBERON:0002388 +def: "mesopodial segment of the pes, including the tarsal skeleton and associated tissues." [http://en.wikipedia.org/wiki/Ankle, https://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +synonym: "ankle" EXACT [MA:0000043] +synonym: "ankle region" EXACT [] +synonym: "articulatio talocruralis" RELATED LATIN [http://en.wikipedia.org/wiki/Ankle] +synonym: "hind basipodium" RELATED [MA:th] +synonym: "hind mesopodium" RELATED [MA:th] +synonym: "hock" RELATED SENSU [http://en.wikipedia.org/wiki/Hock_(anatomy)] +synonym: "tarsal limb segment" EXACT [] +xref: CALOHA:TS-2219 +xref: EFO:0001409 +xref: EMAPA:32783 +xref: FMA:9665 +xref: GAID:41 +xref: galen:Ankle +xref: http://en.wikipedia.org/wiki/Ankle +xref: http://www.snomedbrowser.com/Codes/Details/361292008 +xref: MA:0000043 +xref: MESH:A01.378.610.250.149 +xref: MESH:A13.473.821 +xref: OpenCyc:Mx4rvVi-R5wpEbGdrcN5Y29ycA +is_a: UBERON:0006716 ! mesopodium region +is_a: UBERON:0008784 ! lower limb segment +intersection_of: UBERON:0006716 ! mesopodium region +intersection_of: part_of UBERON:0002387 ! pes +disjoint_from: UBERON:0004772 ! eyelid tarsus +relationship: distally_connected_to UBERON:0000983 ! metatarsus region +relationship: has_skeleton UBERON:0009879 ! tarsal skeleton +relationship: part_of UBERON:0002387 ! pes +relationship: proximally_connected_to UBERON:0003823 ! hindlimb zeugopod + +[Term] +id: UBERON:0004455 +name: neurula embryo +alt_id: UBERON:0007013 +def: "An embryo at the neurula stage." [http://orcid.org/0000-0002-6601-2165] +synonym: "neurula" EXACT [BTO:0001766] +xref: BILA:0000061 +xref: BTO:0001766 +xref: http://linkedlifedata.com/resource/umls/id/C1518306 +xref: NCIT:C34229 +xref: UMLS:C1518306 {source="ncithesaurus:Neurula"} +is_a: UBERON:0000922 ! embryo +intersection_of: UBERON:0000468 ! multicellular organism +intersection_of: existence_starts_and_ends_during UBERON:0000110 ! neurula stage +relationship: develops_from UBERON:0004734 ! gastrula +relationship: existence_starts_and_ends_during UBERON:0000110 ! neurula stage + +[Term] +id: UBERON:0004456 +name: entire sense organ system +def: "Sum of all sensory systems in an organism." [http://orcid.org/0000-0002-6601-2165] +subset: uberon_slim +synonym: "sense organ system" EXACT [FMA:78499] +xref: FMA:78499 +is_a: UBERON:0000467 ! anatomical system +relationship: existence_ends_during UBERON:0000066 ! fully formed stage + +[Term] +id: UBERON:0004457 +name: obsolete cavity lining +is_obsolete: true +replaced_by: UBERON:0000042 + +[Term] +id: UBERON:0004458 +name: obsolete body cavity or lining +def: "Either a cavity lining or the space it encloses." [https://github.com/obophenotype/uberon/issues/12] +property_value: dc-contributor https://github.com/cmungall +is_obsolete: true +replaced_by: UBERON:0005906 + +[Term] +id: UBERON:0004461 +name: skeletal musculature of head +def: "Any collection of skeletal muscles that is part of a head [Automatically generated definition]." [OBOL:automatic] +comment: This class is restricted to skeletal muscles that attach to the cranial skeleton. This seems to be consistent with FMA and EMAPA usage. Note that by definition this excludes invertebrate head musculature. It corresponds to the individual muscle organ term UBERON:0002376 +subset: non_informative +synonym: "head musculature" EXACT [FMA:71287] +synonym: "muscle group of head" EXACT [FMA:71287] +synonym: "muscles of head" EXACT [FMA:71287] +synonym: "musculi capitis" EXACT LATIN [FMA:71287, FMA:TA] +synonym: "set of muscles of head" EXACT [FMA:71287] +xref: EMAPA:18171 +xref: FMA:71287 +is_a: UBERON:0008229 ! craniocervical region musculature +intersection_of: UBERON:0001015 ! musculature +intersection_of: attaches_to UBERON:0003129 ! skull +intersection_of: part_of UBERON:0000033 ! head +relationship: attaches_to UBERON:0003129 ! skull +relationship: develops_from UBERON:0005253 ! head mesenchyme +relationship: part_of UBERON:0000033 ! head +relationship: part_of UBERON:0013700 ! axial musculature + +[Term] +id: UBERON:0004462 +name: musculature of body wall +def: "Any collection of muscles that is part of a body wall [Automatically generated definition]." [OBOL:automatic] +synonym: "body wall muscles" RELATED [] +synonym: "body wall musculature" EXACT [FMA:86931] +xref: BSA:0000058 +xref: BTO:0001863 +xref: EMAPA:37853 {source="MA:th"} +xref: FMA:86931 +xref: WBbt:0005813 +is_a: UBERON:0001015 ! musculature +intersection_of: UBERON:0001015 ! musculature +intersection_of: part_of UBERON:0000309 ! body wall +relationship: part_of UBERON:0000309 ! body wall + +[Term] +id: UBERON:0004463 +name: musculature of hindlimb stylopod +def: "Any collection of muscles that is part of a hindlimb stylopod (upper leg / thigh)[Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "muscle group of thigh" EXACT [FMA:50208] +synonym: "musculature of thigh" EXACT [FMA:50208] +synonym: "set of muscles of thigh" EXACT [FMA:50208] +synonym: "thigh musculature" EXACT [FMA:50208] +xref: FMA:50208 +is_a: UBERON:0004466 ! musculature of leg +intersection_of: UBERON:0001015 ! musculature +intersection_of: part_of UBERON:0000376 ! hindlimb stylopod +relationship: part_of UBERON:0000376 ! hindlimb stylopod + +[Term] +id: UBERON:0004464 +name: musculature of thorax +def: "Any collection of muscles that is part of a thorax [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "muscle group of thorax" EXACT [FMA:71293] +synonym: "muscles of thorax" EXACT [FMA:71293] +synonym: "musculi thoracis" EXACT LATIN [FMA:71293, FMA:TA] +synonym: "set of muscles of thorax" EXACT [FMA:71293] +synonym: "thoracic musculature" EXACT [FMA:71293] +xref: BTO:0000508 +xref: EMAPA:37260 {source="MA:th"} +xref: FMA:71293 +is_a: UBERON:0004479 ! musculature of trunk +intersection_of: UBERON:0001015 ! musculature +intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk +relationship: part_of UBERON:0000915 ! thoracic segment of trunk + +[Term] +id: UBERON:0004465 +name: musculature of neck +def: "Any collection of muscles that is part of a neck [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "cervical muscles" EXACT [AAO:0000091] +synonym: "muscle group of neck" EXACT [FMA:71290] +synonym: "muscles of neck" EXACT [FMA:71290] +synonym: "musculi cervicis" EXACT LATIN [FMA:71290, FMA:TA] +synonym: "musculi colli" EXACT LATIN [FMA:71290, FMA:TA] +synonym: "neck musculature" EXACT [FMA:71290] +synonym: "set of muscles of neck" EXACT [FMA:71290] +xref: AAO:0000091 +xref: EMAPA:36050 +xref: FMA:71290 +xref: MESH:D009334 +is_a: UBERON:0008229 ! craniocervical region musculature +intersection_of: UBERON:0001015 ! musculature +intersection_of: part_of UBERON:0000974 ! neck +relationship: part_of UBERON:0000974 ! neck + +[Term] +id: UBERON:0004466 +name: musculature of leg +alt_id: UBERON:0005632 +def: "Any collection of muscles that is part of a lower leg or upper leg [Automatically generated definition]." [OBOL:automatic] +synonym: "leg muscle system" EXACT [EHDAA2:0000973] +xref: EHDAA2:0000973 +is_a: UBERON:0004482 ! musculature of lower limb +intersection_of: UBERON:0001015 ! musculature +intersection_of: part_of UBERON:0000978 ! leg +relationship: part_of UBERON:0000978 ! leg + +[Term] +id: UBERON:0004467 +name: musculature of pharynx +def: "the collection of muscles that acts on the pharynx." [http://orcid.org/0000-0002-6601-2165] +comment: See comments for 'pharyngeal muscle' +subset: vertebrate_core +synonym: "pharyngeal musculature" EXACT [TAO:0001307] +synonym: "set of muscles of pharynx" RELATED [FMA:264609] +xref: FMA:264609 +xref: TAO:0001307 +xref: ZFA:0001307 +is_a: UBERON:0001015 ! musculature + +[Term] +id: UBERON:0004468 +name: set of muscles of vertebral column +synonym: "muscle group of vertebral column" EXACT [FMA:33061] +xref: FMA:33061 +is_a: UBERON:0001015 ! musculature +intersection_of: UBERON:0001015 ! musculature +intersection_of: attaches_to UBERON:0001130 ! vertebral column +relationship: attaches_to UBERON:0001130 ! vertebral column + +[Term] +id: UBERON:0004469 +name: musculature of back +def: "Any collection of muscles that is part of a back [Automatically generated definition]." [OBOL:automatic] +synonym: "muscle group of back" EXACT [FMA:71291] +synonym: "muscles of back" EXACT [FMA:71291] +synonym: "musculi dorsi" EXACT LATIN [FMA:71291, FMA:TA] +synonym: "set of muscles of back" EXACT [FMA:71291] +xref: FMA:71291 +is_a: UBERON:0001015 ! musculature +intersection_of: UBERON:0001015 ! musculature +intersection_of: part_of UBERON:0001137 ! dorsum +relationship: part_of UBERON:0001137 ! dorsum + +[Term] +id: UBERON:0004470 +name: musculature of pelvic girdle +alt_id: UBERON:0004485 +alt_id: UBERON:0005633 +def: "Any collection of muscles that is part of a pelvic girdle [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "muscle group of pelvic girdle" EXACT [FMA:50205] +synonym: "muscle group of pelvis" EXACT [FMA:50248] +synonym: "muscular system of pelvis" RELATED [FMA:50248] +synonym: "pelvic girdle muscle system" EXACT [EHDAA2:0001429] +synonym: "pelvic girdle muscles" EXACT [AAO:0000427] +synonym: "pelvic girdle musculature" EXACT [FMA:50205] +synonym: "set of muscles of pelvic girdle" EXACT [FMA:50205] +synonym: "set of muscles of pelvis" RELATED [FMA:50248] +xref: AAO:0000427 +xref: EHDAA2:0001429 +xref: EMAPA:18184 +xref: FMA:50205 +xref: FMA:50248 +is_a: UBERON:0004479 ! musculature of trunk +is_a: UBERON:0014792 ! musculature of pelvic complex +intersection_of: UBERON:0001015 ! musculature +intersection_of: part_of UBERON:0001271 ! pelvic girdle region +relationship: part_of UBERON:0001271 ! pelvic girdle region + +[Term] +id: UBERON:0004471 +name: musculature of pectoral girdle +def: "A subdivision of the musculature of the body in the pectoral girdle region. Includes pectoral and shoulder muscles." [https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "muscle group of pectoral girdle" EXACT [FMA:33519] +synonym: "pectoral girdle muscles" EXACT [AAO:0000423] +synonym: "pectoral girdle musculature" EXACT [FMA:33519] +synonym: "set of muscles of pectoral girdle" EXACT [FMA:33519] +xref: AAO:0000423 +xref: EMAPA:37857 {source="MA:th"} +xref: FMA:33519 +is_a: UBERON:0014793 ! musculature of pectoral complex +intersection_of: UBERON:0001015 ! musculature +intersection_of: part_of UBERON:0001421 ! pectoral girdle region +relationship: part_of UBERON:0001421 ! pectoral girdle region + +[Term] +id: UBERON:0004472 +name: obsolete musculature of thorax +synonym: "chest musculature" RELATED [FMA:74779] +synonym: "musculature of chest" EXACT [FMA:74779] +synonym: "set of muscles of chest" RELATED [FMA:74779] +is_obsolete: true +consider: FMA:74779 +consider: UBERON:0004464 + +[Term] +id: UBERON:0004473 +name: musculature of face +def: "Any collection of muscles that is part of a face." [OBOL:automatic] +subset: pheno_slim +synonym: "entire facial musculature" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "facial muscles" EXACT [FMA:71288] +synonym: "muscle group of face" EXACT [FMA:71288] +synonym: "musculi faciei" EXACT LATIN [FMA:71288, FMA:TA] +synonym: "set of facial muscles" RELATED [FMA:71288] +synonym: "set of muscles of face" RELATED [FMA:71288] +xref: FMA:71288 +is_a: UBERON:0008229 ! craniocervical region musculature +intersection_of: UBERON:0001015 ! musculature +intersection_of: part_of UBERON:0001456 ! face +relationship: part_of UBERON:0001456 ! face + +[Term] +id: UBERON:0004474 +name: musculature of arm +def: "Any collection of muscles that is part of an arm [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "arm muscle system" EXACT [EHDAA2:0000141] +synonym: "arm musculature" EXACT [FMA:50202] +synonym: "muscle group of arm" EXACT [FMA:50202] +synonym: "set of muscles of arm" EXACT [FMA:50202] +xref: EHDAA2:0000141 +is_a: UBERON:0004481 ! musculature of upper limb +intersection_of: UBERON:0001015 ! musculature +intersection_of: part_of UBERON:0001460 ! arm +relationship: part_of UBERON:0001460 ! arm + +[Term] +id: UBERON:0004475 +name: musculature of hip +def: "The collection of muscles that form attachments to the hip skeleton." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "hip musculature" EXACT [FMA:50227] +synonym: "muscle group of hip" EXACT [FMA:50227] +synonym: "set of muscles of hip" EXACT [FMA:50227] +xref: FMA:50227 +is_a: UBERON:0001015 ! musculature +intersection_of: UBERON:0001015 ! musculature +intersection_of: attaches_to UBERON:0008202 ! bone of hip region +relationship: attaches_to UBERON:0008202 ! bone of hip region + +[Term] +id: UBERON:0004476 +name: musculature of shoulder +def: "The collection of muscles that form attachments to the shoulder skeleton." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "muscle group of shoulder" EXACT [FMA:50220] +synonym: "set of muscles of shoulder" EXACT [FMA:50220] +xref: FMA:50220 +is_a: UBERON:0001015 ! musculature +intersection_of: UBERON:0001015 ! musculature +intersection_of: attaches_to UBERON:0003461 ! shoulder bone +relationship: attaches_to UBERON:0003461 ! shoulder bone + +[Term] +id: UBERON:0004477 +name: obsolete tongue musculature +synonym: "muscle group of tongue" EXACT [FMA:71289] +synonym: "muscles of tongue" EXACT [FMA:71289] +synonym: "musculi linguae" EXACT LATIN [FMA:71289, FMA:TA] +synonym: "set of muscles of tongue" EXACT [FMA:71289] +is_obsolete: true +consider: FMA:71289 + +[Term] +id: UBERON:0004478 +name: musculature of larynx +def: "The collection of muscles that are part of the larynx." [http://orcid.org/0000-0002-6601-2165] +synonym: "laryngeal muscles" EXACT [FMA:46616] +synonym: "laryngeal muscles set" EXACT [FMA:46616] +synonym: "muscle group of larynx" EXACT [FMA:46616] +synonym: "set of laryngeal muscles" EXACT [FMA:46616] +synonym: "set of muscles of larynx" EXACT [FMA:264611] +xref: FMA:264611 +xref: FMA:46616 +xref: http://en.wikipedia.org/wiki/Muscles_of_larynx +xref: MESH:D007821 +is_a: UBERON:0001015 ! musculature +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0001015 ! musculature +intersection_of: part_of UBERON:0001737 ! larynx +relationship: part_of UBERON:0001737 ! larynx + +[Term] +id: UBERON:0004479 +name: musculature of trunk +def: "Any collection of muscles that is part of a trunk [Automatically generated definition]." [OBOL:automatic] +subset: efo_slim +subset: pheno_slim +synonym: "muscle group of trunk" EXACT [FMA:50187] +synonym: "muscular system of trunk" RELATED [FMA:50187] +synonym: "set of muscles of trunk" EXACT [FMA:50187] +xref: AAO:0011572 +xref: EFO:0003531 +xref: FMA:50187 +is_a: UBERON:0001015 ! musculature +intersection_of: UBERON:0001015 ! musculature +intersection_of: part_of UBERON:0002100 ! trunk +relationship: part_of UBERON:0002100 ! trunk + +[Term] +id: UBERON:0004480 +name: musculature of limb +alt_id: UBERON:0005635 +def: "Any collection of muscles that is part of a limb [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "limb muscle system" EXACT [EHDAA2:0000995] +synonym: "limb musculature" EXACT [FMA:50188] +synonym: "muscle group of limb" EXACT [FMA:50188] +synonym: "set of muscles of limb" EXACT [FMA:50188] +xref: EHDAA2:0000995 +xref: EMAPA:32700 +xref: FMA:50188 +is_a: UBERON:0007271 ! appendage musculature +intersection_of: UBERON:0001015 ! musculature +intersection_of: part_of UBERON:0002101 ! limb +relationship: part_of UBERON:0002101 ! limb + +[Term] +id: UBERON:0004481 +name: musculature of upper limb +def: "Any collection of muscles that is part of a forelimb [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "free upper limb musculature" EXACT [FMA:50396] +synonym: "muscle group of free upper limb" EXACT [FMA:50396] +synonym: "musculature of free upper limb" EXACT [FMA:50396] +synonym: "set of muscles of free upper limb" EXACT [FMA:50396] +xref: FMA:50396 +is_a: UBERON:0004480 ! musculature of limb +is_a: UBERON:0007269 ! pectoral appendage musculature +intersection_of: UBERON:0001015 ! musculature +intersection_of: part_of UBERON:0002102 ! forelimb +relationship: part_of UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0004482 +name: musculature of lower limb +def: "Any collection of muscles that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "free lower limb musculature" EXACT [FMA:50399] +synonym: "muscle group of free lower limb" EXACT [FMA:50399] +synonym: "musculature of free lower limb" EXACT [FMA:50399] +synonym: "set of muscles of free lower limb" EXACT [FMA:50399] +xref: FMA:50399 +is_a: UBERON:0004480 ! musculature of limb +is_a: UBERON:0007270 ! pelvic appendage musculature +intersection_of: UBERON:0001015 ! musculature +intersection_of: part_of UBERON:0002103 ! hindlimb +relationship: part_of UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0004483 +name: obsolete iliocostalis musculature +synonym: "iliocostalis muscle group" EXACT [FMA:33062] +synonym: "iliocostalis muscles set" EXACT [FMA:33062] +synonym: "set of iliocostalis muscles" EXACT [FMA:33062] +is_obsolete: true +consider: FMA:33062 + +[Term] +id: UBERON:0004484 +name: obsolete splenius musculature +is_obsolete: true +consider: FMA:22596 + +[Term] +id: UBERON:0004486 +name: musculature of perineum +def: "Any collection of muscles that is part of a perineum [Automatically generated definition]." [OBOL:automatic] +synonym: "musculi perinei" EXACT LATIN [FMA:71295, FMA:TA] +synonym: "perineal muscles" EXACT [FMA:71295] +synonym: "perineal muscles set" EXACT [FMA:71295] +synonym: "set of perineal muscles" EXACT [FMA:71295] +xref: EMAPA:36629 +xref: FMA:71295 +is_a: UBERON:0004479 ! musculature of trunk +intersection_of: UBERON:0001015 ! musculature +intersection_of: part_of UBERON:0002356 ! perineum +relationship: part_of UBERON:0002356 ! perineum + +[Term] +id: UBERON:0004487 +name: musculature of forelimb zeugopod +def: "Any collection of muscles that is part of a lower arm [Automatically generated definition]." [OBOL:automatic] +synonym: "muscle group of forearm" EXACT [FMA:39089] +synonym: "musculature of forearm" EXACT [FMA:39089] +synonym: "set of muscles of forearm" EXACT [FMA:39089] +xref: FMA:39089 +is_a: UBERON:0004474 ! musculature of arm +intersection_of: UBERON:0001015 ! musculature +intersection_of: part_of UBERON:0002386 ! forelimb zeugopod +relationship: part_of UBERON:0002386 ! forelimb zeugopod + +[Term] +id: UBERON:0004488 +name: musculature of pes +def: "Any collection of muscles that is part of a foot [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "foot musculature" EXACT [FMA:50214] +synonym: "muscle group of foot" EXACT [FMA:50214] +synonym: "musculature of foot" EXACT [FMA:50214] +synonym: "set of muscles of foot" EXACT [FMA:50214] +xref: FMA:50214 +is_a: UBERON:0004482 ! musculature of lower limb +intersection_of: UBERON:0001015 ! musculature +intersection_of: part_of UBERON:0002387 ! pes +relationship: part_of UBERON:0002387 ! pes + +[Term] +id: UBERON:0004489 +name: musculature of manus +def: "Any collection of muscles that is part of a manus [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "hand musculature" EXACT [FMA:42368] +synonym: "muscle group of hand" EXACT [FMA:42368] +synonym: "musculature of hand" EXACT [FMA:42368] +synonym: "set of muscles of hand" EXACT [FMA:42368] +xref: FMA:42368 +is_a: UBERON:0004481 ! musculature of upper limb +intersection_of: UBERON:0001015 ! musculature +intersection_of: part_of UBERON:0002398 ! manus +relationship: part_of UBERON:0002398 ! manus + +[Term] +id: UBERON:0004490 +name: cardiac muscle tissue of atrium +def: "A portion of cardiac muscle tissue that is part of an atrium [Automatically generated definition]." [OBOL:automatic] +synonym: "atrial cardiac muscle tissue" EXACT [GO:0055009] +synonym: "atrial heart muscle" EXACT [GO:0055009] +synonym: "atrial myocardium" RELATED [GO:0055009, GOC:mtg_heart] +synonym: "cardiac atrium muscle" EXACT [GO:0055009] +xref: FMA:7283 +is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium +intersection_of: UBERON:0001133 ! cardiac muscle tissue +intersection_of: part_of UBERON:0002081 ! cardiac atrium +relationship: part_of UBERON:0002302 ! myocardium of atrium + +[Term] +id: UBERON:0004491 +name: cardiac muscle tissue of interatrial septum +def: "A portion of cardiac muscle tissue that is part of a interatrial septum [Automatically generated definition]." [OBOL:automatic] +synonym: "interatrial septum cardiac muscle tissue" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "interatrial septum heart muscle" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "interatrial septum muscle" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "interatrial septum myocardium" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: FMA:84083 +is_a: UBERON:0004492 ! cardiac muscle tissue of cardiac septum +intersection_of: UBERON:0001133 ! cardiac muscle tissue +intersection_of: part_of UBERON:0002085 ! interatrial septum +relationship: part_of UBERON:0002085 ! interatrial septum + +[Term] +id: UBERON:0004492 +name: cardiac muscle tissue of cardiac septum +def: "A portion of cardiac muscle tissue that is part of a cardiac septum [Automatically generated definition]." [OBOL:automatic] +synonym: "cardiac septum cardiac muscle tissue" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "cardiac septum heart muscle" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "cardiac septum muscle" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "cardiac septum myocardium" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: FMA:226279 +is_a: UBERON:0001133 ! cardiac muscle tissue +intersection_of: UBERON:0001133 ! cardiac muscle tissue +intersection_of: part_of UBERON:0002099 ! cardiac septum +relationship: part_of UBERON:0002099 ! cardiac septum + +[Term] +id: UBERON:0004493 +name: cardiac muscle tissue of myocardium +def: "A portion of cardiac muscle tissue that is part of a myocardium [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +xref: EMAPA:32688 +xref: FMA:261726 +xref: MA:0002441 +is_a: UBERON:0001133 ! cardiac muscle tissue +intersection_of: UBERON:0001133 ! cardiac muscle tissue +intersection_of: part_of UBERON:0002349 ! myocardium +relationship: part_of UBERON:0002349 {source="MA"} ! myocardium + +[Term] +id: UBERON:0004494 +name: cardiac muscle tissue of papillary muscle +def: "A portion of cardiac muscle tissue that is part of a papillary muscle [Automatically generated definition]." [OBOL:automatic] +xref: FMA:84425 +is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle +intersection_of: UBERON:0001133 ! cardiac muscle tissue +intersection_of: part_of UBERON:0002494 ! papillary muscle of heart +relationship: part_of UBERON:0002494 ! papillary muscle of heart + +[Term] +id: UBERON:0004495 +name: skeletal muscle tissue of diaphragm +def: "A portion of skeletal muscle tissue that is part of a diaphragm [Automatically generated definition]." [OBOL:automatic] +xref: FMA:261898 +is_a: UBERON:0003898 ! skeletal muscle tissue of trunk +is_a: UBERON:0004830 ! respiratory system skeletal muscle +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0001103 ! diaphragm +relationship: part_of UBERON:0001103 ! diaphragm + +[Term] +id: UBERON:0004496 +name: skeletal muscle tissue of iliacus +def: "A portion of skeletal muscle tissue that is part of a iliacus [Automatically generated definition]." [OBOL:automatic] +xref: FMA:261992 +is_a: UBERON:0003898 ! skeletal muscle tissue of trunk +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0001369 ! iliacus muscle +relationship: part_of UBERON:0001369 ! iliacus muscle + +[Term] +id: UBERON:0004497 +name: skeletal muscle tissue of gluteus maximus +def: "A portion of skeletal muscle tissue that is part of a gluteus maximus [Automatically generated definition]." [OBOL:automatic] +xref: FMA:261980 +is_a: UBERON:0003898 ! skeletal muscle tissue of trunk +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0001370 ! gluteus maximus +relationship: part_of UBERON:0001370 ! gluteus maximus + +[Term] +id: UBERON:0004498 +name: skeletal muscle tissue of quadriceps femoris +def: "A portion of skeletal muscle tissue that is part of a quadriceps femoris [Automatically generated definition]." [OBOL:automatic] +xref: FMA:261998 +is_a: UBERON:0001134 ! skeletal muscle tissue +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0001377 ! quadriceps femoris +relationship: part_of UBERON:0001377 ! quadriceps femoris + +[Term] +id: UBERON:0004499 +name: skeletal muscle tissue of tibialis anterior +def: "A portion of skeletal muscle tissue that is part of a tibialis anterior [Automatically generated definition]." [OBOL:automatic] +xref: FMA:262004 +is_a: UBERON:0001134 ! skeletal muscle tissue +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0001385 ! tibialis anterior +relationship: part_of UBERON:0001385 ! tibialis anterior + +[Term] +id: UBERON:0004500 +name: skeletal muscle tissue of deltoid +def: "A portion of skeletal muscle tissue that is part of a deltoid [Automatically generated definition]." [OBOL:automatic] +synonym: "skeletal muscle tissue of deltoid muscle" RELATED [FMA:261732] +xref: FMA:261732 +is_a: UBERON:0001134 ! skeletal muscle tissue +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0001476 ! deltoid +relationship: part_of UBERON:0001476 ! deltoid + +[Term] +id: UBERON:0004501 +name: skeletal muscle tissue of teres major +def: "A portion of skeletal muscle tissue that is part of a teres major [Automatically generated definition]." [OBOL:automatic] +synonym: "skeletal muscle tissue of teres major muscle" RELATED [FMA:261962] +xref: FMA:261962 +is_a: UBERON:0001134 ! skeletal muscle tissue +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0001478 ! teres major muscle +relationship: part_of UBERON:0001478 ! teres major muscle + +[Term] +id: UBERON:0004502 +name: skeletal muscle tissue of biceps brachii +def: "A portion of skeletal muscle tissue that is part of a biceps brachii [Automatically generated definition]." [OBOL:automatic] +synonym: "skeletal muscle tissue of biceps brachii muscle" RELATED [FMA:261974] +xref: FMA:261974 +is_a: UBERON:0001134 ! skeletal muscle tissue +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0001507 ! biceps brachii +relationship: part_of UBERON:0001507 ! biceps brachii + +[Term] +id: UBERON:0004503 +name: skeletal muscle tissue of digastric +def: "A portion of skeletal muscle tissue that is part of a digastric [Automatically generated definition]." [OBOL:automatic] +xref: FMA:261872 +is_a: UBERON:0001134 ! skeletal muscle tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0001562 ! digastric muscle group +relationship: part_of UBERON:0001562 ! digastric muscle group + +[Term] +id: UBERON:0004504 +name: skeletal muscle tissue of mylohyoid +def: "A portion of skeletal muscle tissue that is part of a mylohyoid [Automatically generated definition]." [OBOL:automatic] +xref: FMA:261878 +is_a: UBERON:0001134 ! skeletal muscle tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0001564 ! mylohyoid muscle +relationship: part_of UBERON:0001564 ! mylohyoid muscle + +[Term] +id: UBERON:0004505 +name: skeletal muscle tissue of orbicularis oculi +def: "A portion of skeletal muscle tissue that is part of a orbicularis oculi [Automatically generated definition]." [OBOL:automatic] +xref: FMA:261812 +is_a: UBERON:0003269 ! skeletal muscle tissue of eye +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0001578 ! orbicularis oculi muscle +relationship: part_of UBERON:0001578 ! orbicularis oculi muscle + +[Term] +id: UBERON:0004506 +name: skeletal muscle tissue of masseter +def: "A portion of skeletal muscle tissue that is part of a masseter [Automatically generated definition]." [OBOL:automatic] +xref: FMA:261824 +is_a: UBERON:0001134 ! skeletal muscle tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0001597 ! masseter muscle +relationship: part_of UBERON:0001597 ! masseter muscle + +[Term] +id: UBERON:0004507 +name: skeletal muscle tissue of temporalis +def: "A portion of skeletal muscle tissue that is part of a temporalis [Automatically generated definition]." [OBOL:automatic] +xref: FMA:261740 +is_a: UBERON:0001134 ! skeletal muscle tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0001598 ! temporalis muscle +relationship: part_of UBERON:0001598 ! temporalis muscle + +[Term] +id: UBERON:0004508 +name: skeletal muscle tissue of levator palpebrae superioris +def: "A portion of skeletal muscle tissue that is part of a levator palpebrae superioris [Automatically generated definition]." [OBOL:automatic] +xref: FMA:261782 +is_a: UBERON:0003269 ! skeletal muscle tissue of eye +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0001604 ! levator palpebrae superioris +relationship: part_of UBERON:0001604 ! levator palpebrae superioris + +[Term] +id: UBERON:0004509 +name: skeletal muscle tissue of trapezius +def: "A portion of skeletal muscle tissue that is part of a trapezius [Automatically generated definition]." [OBOL:automatic] +synonym: "skeletal muscle tissue of trapezius muscle" RELATED [FMA:261938] +xref: FMA:261938 +is_a: UBERON:0001134 ! skeletal muscle tissue +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0002380 ! trapezius muscle +relationship: part_of UBERON:0002380 ! trapezius muscle + +[Term] +id: UBERON:0004510 +name: skeletal muscle tissue of pectoralis major +def: "A portion of skeletal muscle tissue that is part of a pectoralis major [Automatically generated definition]." [OBOL:automatic] +synonym: "skeletal muscle tissue of pectoralis major muscle" RELATED [FMA:261968] +xref: FMA:261968 +is_a: UBERON:0003898 ! skeletal muscle tissue of trunk +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0002381 ! pectoralis major +relationship: part_of UBERON:0002381 ! pectoralis major + +[Term] +id: UBERON:0004511 +name: skeletal muscle tissue of rectus abdominis +def: "A portion of skeletal muscle tissue that is part of a rectus abdominis [Automatically generated definition]." [OBOL:automatic] +xref: FMA:261924 +is_a: UBERON:0003898 ! skeletal muscle tissue of trunk +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0002382 ! rectus abdominis muscle +relationship: part_of UBERON:0002382 ! rectus abdominis muscle + +[Term] +id: UBERON:0004512 +name: skeletal muscle tissue of supraspinatus +def: "A portion of skeletal muscle tissue that is part of a supraspinatus [Automatically generated definition]." [OBOL:automatic] +synonym: "skeletal muscle tissue of supraspinatus muscle" RELATED [FMA:261956] +xref: FMA:261956 +is_a: UBERON:0001134 ! skeletal muscle tissue +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0002383 ! supraspinatus muscle +relationship: part_of UBERON:0002383 ! supraspinatus muscle + +[Term] +id: UBERON:0004513 +name: skeletal muscle tissue of internal intercostal muscle +def: "A portion of skeletal muscle tissue that is part of a internal intercostal muscle [Automatically generated definition]." [OBOL:automatic] +xref: FMA:261888 +is_a: UBERON:0003898 ! skeletal muscle tissue of trunk +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0002403 ! internal intercostal muscle +relationship: part_of UBERON:0002403 ! internal intercostal muscle + +[Term] +id: UBERON:0004514 +name: skeletal muscle tissue of transversus thoracis +def: "A portion of skeletal muscle tissue that is part of a transversus thoracis [Automatically generated definition]." [OBOL:automatic] +xref: FMA:261892 +is_a: UBERON:0003898 ! skeletal muscle tissue of trunk +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0002404 ! transversus thoracis +relationship: part_of UBERON:0002404 ! transversus thoracis + +[Term] +id: UBERON:0004515 +name: smooth muscle tissue of bronchiole +def: "A portion of smooth muscle tissue that is part of a bronchiole [Automatically generated definition]." [OBOL:automatic] +synonym: "smooth muscle tissue of lobular bronchiole" EXACT [FMA:261081] +xref: FMA:261045 +xref: FMA:261081 +is_a: UBERON:0004242 ! bronchus smooth muscle +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0002186 ! bronchiole +relationship: part_of UBERON:0002186 ! bronchiole + +[Term] +id: UBERON:0004516 +name: smooth muscle tissue of terminal bronchiole +def: "A portion of smooth muscle tissue that is part of a terminal bronchiole [Automatically generated definition]." [OBOL:automatic] +xref: FMA:261051 +is_a: UBERON:0004515 ! smooth muscle tissue of bronchiole +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0002187 ! terminal bronchiole +relationship: part_of UBERON:0002187 ! terminal bronchiole + +[Term] +id: UBERON:0004517 +name: smooth muscle tissue of respiratory bronchiole +def: "A portion of smooth muscle tissue that is part of a respiratory bronchiole [Automatically generated definition]." [OBOL:automatic] +xref: FMA:261055 +is_a: UBERON:0004515 ! smooth muscle tissue of bronchiole +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0002188 ! respiratory bronchiole +relationship: part_of UBERON:0002188 ! respiratory bronchiole + +[Term] +id: UBERON:0004518 +name: muscle of vertebral column +def: "A muscle that is attached to a vertebra of the vertebral column." [https://orcid.org/0000-0002-6601-2165] +synonym: "vertebral column muscle" EXACT [FMA:22594] +xref: FMA:22594 +is_a: UBERON:0014892 ! skeletal muscle organ +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: attaches_to UBERON:0002412 ! vertebra +relationship: attaches_to UBERON:0002412 ! vertebra + +[Term] +id: UBERON:0004519 +name: muscle of anal triangle +def: "Any muscle organ that is part of a anal part of perineum." [OBOL:automatic] +synonym: "anal triangle muscle" EXACT [FMA:77304] +xref: FMA:77304 +is_a: UBERON:0002379 {source="FMA"} ! perineal muscle +intersection_of: UBERON:0001630 ! muscle organ +intersection_of: part_of UBERON:0006867 ! anal part of perineum +relationship: part_of UBERON:0006867 ! anal part of perineum + +[Term] +id: UBERON:0004520 +name: striated muscle tissue of prostate +def: "A portion of striated muscle tissue that is part of a prostate gland [Automatically generated definition]." [OBOL:automatic] +xref: FMA:45716 +is_a: UBERON:0001134 ! skeletal muscle tissue +is_a: UBERON:0008715 ! muscle tissue of prostate +intersection_of: UBERON:0002036 ! striated muscle tissue +intersection_of: part_of UBERON:0002367 ! prostate gland + +[Term] +id: UBERON:0004521 +name: vasculature of muscle organ +def: "A vasculature that is part of a muscle organ [Automatically generated definition]." [OBOL:automatic] +synonym: "muscular organ vasculature" EXACT [FMA:87123] +xref: FMA:87123 +is_a: UBERON:0004522 ! vasculature of musculoskeletal system +is_a: UBERON:0006876 ! vasculature of organ +intersection_of: UBERON:0002049 ! vasculature +intersection_of: part_of UBERON:0001630 ! muscle organ +relationship: part_of UBERON:0001630 ! muscle organ + +[Term] +id: UBERON:0004522 +name: vasculature of musculoskeletal system +def: "A vasculature that is part of a musculoskeletal system [Automatically generated definition]." [OBOL:automatic] +xref: FMA:239607 +is_a: UBERON:0002049 ! vasculature +intersection_of: UBERON:0002049 ! vasculature +intersection_of: part_of UBERON:0002204 ! musculoskeletal system +relationship: part_of UBERON:0002204 ! musculoskeletal system + +[Term] +id: UBERON:0004523 +name: papillary muscle of right ventricle +def: "A papillary muscle that is part of a right ventricle [Automatically generated definition]." [OBOL:automatic] +xref: EHDAA2:0004544 +xref: FMA:7259 +xref: http://www.snomedbrowser.com/Codes/Details/244356004 +is_a: UBERON:0002494 ! papillary muscle of heart +intersection_of: UBERON:0002494 ! papillary muscle of heart +intersection_of: part_of UBERON:0002080 ! heart right ventricle +relationship: part_of UBERON:0002080 ! heart right ventricle + +[Term] +id: UBERON:0004524 +name: papillary muscle of left ventricle +def: "A papillary muscle that is part of a left ventricle [Automatically generated definition]." [OBOL:automatic] +xref: EHDAA2:0001398 +xref: FMA:9352 +xref: http://www.snomedbrowser.com/Codes/Details/244347007 +is_a: UBERON:0002494 ! papillary muscle of heart +intersection_of: UBERON:0002494 ! papillary muscle of heart +intersection_of: part_of UBERON:0002084 ! heart left ventricle +relationship: part_of UBERON:0002084 ! heart left ventricle + +[Term] +id: UBERON:0004525 +name: cardiac muscle tissue of trabecula carnea of right ventricle +def: "A portion of trabecula carnea cardiac muscle tissue that is part of a right ventricle [Automatically generated definition]." [OBOL:automatic] +xref: FMA:84429 +is_a: UBERON:0003381 ! cardiac muscle of right ventricle +is_a: UBERON:0003452 ! trabecula carnea cardiac muscle tissue +intersection_of: UBERON:0003452 ! trabecula carnea cardiac muscle tissue +intersection_of: part_of UBERON:0002080 ! heart right ventricle +relationship: part_of UBERON:0006570 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! trabecula carnea of right ventricle + +[Term] +id: UBERON:0004526 +name: cardiac muscle tissue of trabecula carnea of left ventricle +def: "A portion of trabecula carnea cardiac muscle tissue that is part of a left ventricle [Automatically generated definition]." [OBOL:automatic] +xref: FMA:84430 +is_a: UBERON:0003382 ! cardiac muscle of left ventricle +is_a: UBERON:0003452 ! trabecula carnea cardiac muscle tissue +intersection_of: UBERON:0003452 ! trabecula carnea cardiac muscle tissue +intersection_of: part_of UBERON:0002084 ! heart left ventricle +relationship: part_of UBERON:0006571 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! trabecula carnea of left ventricle + +[Term] +id: UBERON:0004527 +name: alveolar process of maxilla +alt_id: UBERON:0001696 +def: "The thickened ridge of bone that contains the tooth sockets on the maxilla." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "alveolar margin of maxilla" EXACT [] +synonym: "alveolar part of maxilla" EXACT [] +synonym: "alveolar process of maxilla" EXACT [] +synonym: "alveolar ridge of maxilla" EXACT [] +synonym: "lower alveolar ridge" EXACT [] +synonym: "maxilla alveolar process" EXACT [] +synonym: "pars dentalis of maxilla" EXACT [AAO:0000396] +synonym: "posterior alveolar ridge" EXACT [] +synonym: "processus alveolaris (maxilla)" EXACT [] +synonym: "processus alveolaris maxillae" EXACT LATIN [FMA:52897, FMA:TA] +xref: AAO:0000396 +xref: Alveolar:process +xref: FMA:52897 +xref: http://www.snomedbrowser.com/Codes/Details/245795005 +xref: MA:0001492 +is_a: UBERON:0004103 ! alveolar ridge +intersection_of: UBERON:0004103 ! alveolar ridge +intersection_of: part_of UBERON:0002397 ! maxilla +disjoint_from: UBERON:0004528 {source="lexical"} ! alveolar ridge of mandible +relationship: part_of UBERON:0002397 ! maxilla + +[Term] +id: UBERON:0004528 +name: alveolar ridge of mandible +def: "The thickened ridge of bone that contains the tooth sockets on the mandible." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "alveolar arch of mandible" RELATED [FMA:52832] +synonym: "alveolar margin of mandible" EXACT [] +synonym: "alveolar part of mandible" EXACT [] +synonym: "alveolar process of mandible" EXACT [FMA:52832] +synonym: "anterior alveolar ridge" EXACT [] +synonym: "pars alveolaris (mandibula)" EXACT [FMA:52832] +synonym: "pars alveolaris mandibulae" RELATED LATIN [http://en.wikipedia.org/wiki/Alveolar_part_of_mandible] +synonym: "upper alveolar ridge" EXACT [] +xref: FMA:52832 +xref: http://en.wikipedia.org/wiki/Alveolar_part_of_mandible +xref: http://www.snomedbrowser.com/Codes/Details/245791001 +is_a: UBERON:0004103 ! alveolar ridge +intersection_of: UBERON:0004103 ! alveolar ridge +intersection_of: part_of UBERON:0001684 ! mandible +relationship: part_of UBERON:0001684 ! mandible + +[Term] +id: UBERON:0004529 +name: anatomical projection +def: "A projection or outgrowth of tissue from a larger body or organ." [http://en.wikipedia.org/wiki/Process_(anatomy), https://github.com/obophenotype/uberon/issues/39] +subset: upper_level +synonym: "anatomical process" BROAD [] +synonym: "anatomical protrusion" RELATED [] +synonym: "flange" NARROW [VSAO:0000180] +synonym: "flanges" NARROW PLURAL [VSAO:0000180] +synonym: "lamella" NARROW [VSAO:0000180] +synonym: "lamellae" NARROW PLURAL [VSAO:0000180] +synonym: "lamina" NARROW [VSAO:0000180] +synonym: "laminae" NARROW [VSAO:0000180] +synonym: "organ process" NARROW [] +synonym: "papilla" NARROW [] +synonym: "process" BROAD [VSAO:0000180] +synonym: "process of organ" NARROW [] +synonym: "processes" NARROW PLURAL [VSAO:0000180] +synonym: "processus" EXACT LATIN [FMA:67601, FMA:TA] +synonym: "projection" EXACT [] +synonym: "projection" NARROW [VSAO:0000180] +synonym: "projections" NARROW PLURAL [VSAO:0000180] +synonym: "protrusion" RELATED [] +synonym: "ridge" NARROW [VSAO:0000180] +synonym: "ridges" NARROW PLURAL [VSAO:0000180] +synonym: "shelf" NARROW [VSAO:0000180] +synonym: "shelves" NARROW PLURAL [VSAO:0000180] +synonym: "spine" RELATED [] +xref: AAO:0010278 +xref: FMA:67601 +xref: galen:Ridge +xref: HAO:0000822 +xref: NCIT:C61549 +xref: Process:(anatomy) +xref: TAO:0001834 +xref: VSAO:0000180 +xref: XAO:0004020 +is_a: UBERON:0034768 ! morphological feature +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/wdahdul +relationship: part_of UBERON:0000062 ! organ + +[Term] +id: UBERON:0004530 +name: bony projection +def: "Anatomical projection that is composed of bone tissue." [VSAO:wd] +subset: vertebrate_core +synonym: "bone process" EXACT [FMA:75433] +synonym: "bony projections" RELATED PLURAL [ZFA:0001637] +synonym: "projection of bone" EXACT [] +xref: FMA:75433 +xref: ZFA:0001637 +is_a: UBERON:4100000 ! skeletal element projection +intersection_of: UBERON:4100000 ! skeletal element projection +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: continuous_with UBERON:0004765 ! skeletal element + +[Term] +id: UBERON:0004531 +name: obsolete left side of organism +is_obsolete: true +consider: BSPO:0000000 + +[Term] +id: UBERON:0004532 +name: obsolete right side of organism +is_obsolete: true +consider: BSPO:0000007 + +[Term] +id: UBERON:0004533 +name: left testis +def: "A testis that is in the left side of the genitalia [Automatically generated definition]." [OBOL:automatic] +synonym: "left testicle" EXACT [MA:0001746] +xref: EMAPA:37370 {source="MA:th"} +xref: FMA:7212 +xref: http://linkedlifedata.com/resource/umls/id/C0227998 +xref: http://www.snomedbrowser.com/Codes/Details/367720001 +xref: MA:0001746 +xref: NCIT:C49323 +xref: UMLS:C0227998 {source="ncithesaurus:Left_Testis"} +is_a: UBERON:0000473 ! testis +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0000473 ! testis +intersection_of: in_left_side_of UBERON:0000990 ! reproductive system +relationship: in_left_side_of UBERON:0000990 ! reproductive system + +[Term] +id: UBERON:0004534 +name: right testis +def: "A testis that is in the right side of the genitalia [Automatically generated definition]." [OBOL:automatic] +synonym: "right testicle" EXACT [MA:0001747] +xref: EMAPA:37371 {source="MA:th"} +xref: FMA:7211 +xref: http://linkedlifedata.com/resource/umls/id/C0227997 +xref: http://www.snomedbrowser.com/Codes/Details/367719007 +xref: MA:0001747 +xref: NCIT:C49326 +xref: OpenCyc:Mx4rvVjM25wpEbGdrcN5Y29ycA +xref: UMLS:C0227997 {source="ncithesaurus:Right_Testis"} +is_a: UBERON:0000473 ! testis +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0000473 ! testis +intersection_of: in_right_side_of UBERON:0000990 ! reproductive system +relationship: in_right_side_of UBERON:0000990 ! reproductive system + +[Term] +id: UBERON:0004535 +name: cardiovascular system +def: "Anatomical system that has as its parts the heart and blood vessels." [BTO:0000088] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "CV system" RELATED [BTO:0000088] +synonym: "Herz und Gefaesssystem" RELATED [BTO:0000088] +xref: AAO:0011001 +xref: BILA:0000016 +xref: BTO:0000088 +xref: CALOHA:TS-1297 +xref: EFO:0000791 +xref: EHDAA2:0000216 +xref: EHDAA:394 +xref: EMAPA:16104 +xref: EMAPA:16370 +xref: EV:0100017 +xref: FMA:7161 +xref: GAID:467 +xref: http://linkedlifedata.com/resource/umls/id/C0007226 +xref: http://www.snomedbrowser.com/Codes/Details/278198007 +xref: MA:0000010 +xref: MAT:0000016 +xref: MESH:D002319 +xref: MIAA:0000016 +xref: NCIT:C12686 +xref: OpenCyc:Mx4rvVjzG5wpEbGdrcN5Y29ycA +xref: TAO:0000010 +xref: UMLS:C0007226 {source="ncithesaurus:Cardiovascular_System"} +xref: VHOG:0000302 +xref: WikipediaCategory:Cardiovascular_system +xref: XAO:0000100 +xref: XAO:0001010 +xref: ZFA:0000010 +is_a: UBERON:0000467 ! anatomical system +intersection_of: UBERON:0000467 ! anatomical system +intersection_of: has_part UBERON:0000948 ! heart +intersection_of: has_part UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0001009 ! circulatory system +relationship: has_part UBERON:0000948 ! heart +relationship: has_part UBERON:0001981 ! blood vessel +relationship: part_of UBERON:0001009 ! circulatory system + +[Term] +id: UBERON:0004536 +name: lymph vasculature +def: "A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep." [ZFA:0005105] +subset: vertebrate_core +synonym: "lymph vessels" RELATED PLURAL [ZFA:0005105] +synonym: "lymphatic trunks and ducts" EXACT [FMA:63815] +synonym: "lymphatic vasculature" EXACT [] +synonym: "lymphatic vessel network" EXACT [] +synonym: "lymphatic vessels set" EXACT [FMA:63815] +synonym: "set of lymphatic vessels" EXACT [] +synonym: "trunci et ductus lymphatici" EXACT LATIN [FMA:63815, FMA:TA] +xref: FMA:63815 +xref: TAO:0005105 +xref: ZFA:0005105 +is_a: UBERON:0002049 ! vasculature +intersection_of: UBERON:0002049 ! vasculature +intersection_of: has_part UBERON:0002391 ! lymph +relationship: has_part UBERON:0002391 ! lymph +relationship: part_of UBERON:0006558 ! lymphatic part of lymphoid system + +[Term] +id: UBERON:0004537 +name: blood vasculature +def: "A vascular network consisting of blood vessels." [https://orcid.org/0000-0002-6601-2165] +synonym: "blood system" RELATED [] +synonym: "blood vascular network" EXACT [] +synonym: "blood vessel system" RELATED [] +synonym: "blood vessels" RELATED [TAO:0001079] +synonym: "set of blood vessels" EXACT [] +xref: TAO:0001079 +xref: ZFA:0001079 +is_a: UBERON:0002049 ! vasculature +intersection_of: UBERON:0002049 ! vasculature +intersection_of: composed_primarily_of UBERON:0001981 ! blood vessel +relationship: composed_primarily_of UBERON:0001981 ! blood vessel + +[Term] +id: UBERON:0004538 +name: left kidney +def: "A kidney that is part of a left side of organism [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +xref: EMAPA:36589 +xref: FMA:7205 +xref: http://linkedlifedata.com/resource/umls/id/C0227614 +xref: http://www.snomedbrowser.com/Codes/Details/362209008 +xref: MA:0001655 +xref: NCIT:C34006 +xref: UMLS:C0227614 {source="ncithesaurus:Left_Kidney"} +is_a: UBERON:0002113 ! kidney +intersection_of: UBERON:0002113 ! kidney +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0004539 +name: right kidney +def: "A kidney that is part of a right side of organism [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +xref: EMAPA:36590 +xref: FMA:7204 +xref: http://linkedlifedata.com/resource/umls/id/C0227613 +xref: http://www.snomedbrowser.com/Codes/Details/362208000 +xref: MA:0001683 +xref: NCIT:C34005 +xref: UMLS:C0227613 {source="ncithesaurus:Right_Kidney"} +is_a: UBERON:0002113 ! kidney +intersection_of: UBERON:0002113 ! kidney +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: in_right_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0004540 +name: proper plantar digital artery +def: "." [http://en.wikipedia.org/wiki/Proper_plantar_digital_arteries] +synonym: "arteriae digitales plantares propriae" EXACT LATIN [FMA:71564, FMA:TA] +synonym: "arteriae digitales plantares propriae" RELATED LATIN [http://en.wikipedia.org/wiki/Proper_plantar_digital_arteries] +synonym: "plantar digital artery proper" EXACT [] +synonym: "proper plantar digital arteries" EXACT [MA:0001968] +synonym: "set of plantar digital arteries proper" RELATED [FMA:71564] +xref: EMAPA:37219 {source="MA:th"} +xref: FMA:71564 +xref: http://en.wikipedia.org/wiki/Proper_plantar_digital_arteries +xref: MA:0001968 +is_a: UBERON:0006138 ! plantar digital artery + +[Term] +id: UBERON:0004544 +name: epididymis epithelium +def: "the layer of secretory cells which lines the epididymis" [MGI:csmith, MP:0004933] +subset: pheno_slim +synonym: "epididymis epithelium" EXACT [FMA:19153] +synonym: "epithelium of epididymis" EXACT [FMA:19153] +xref: BTO:0005768 +xref: CALOHA:TS-2063 +xref: EMAPA:30445 +xref: FMA:19153 +xref: MA:0002825 +is_a: UBERON:0000485 ! simple columnar epithelium +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0012275 ! meso-epithelium +is_a: UBERON:0034969 ! epithelial layer of duct +intersection_of: UBERON:0000485 ! simple columnar epithelium +intersection_of: part_of UBERON:0001301 ! epididymis +relationship: contributes_to_morphology_of UBERON:0001301 ! epididymis +relationship: part_of UBERON:0001301 ! epididymis + +[Term] +id: UBERON:0004545 +name: external capsule of telencephalon +def: "Any of the series of white matter fiber tracts in the brain that run between the most lateral segment of the lentiform nucleus and the claustrum; the white matter of the external capsule contains fibers known as corticocortical association fibers which are responsible for connecting the cerebral cortex to another cortical area; the capsule appears as a thin white sheet of white matter and provides a route for cholinergic fibers from the basal forebrain to the cerebral cortex; it eventually joins the internal capsule around the lentiform nucleus." [MP:0020139] +synonym: "brain external capsule" BROAD [MP:0020139] +synonym: "capsula externa" RELATED LATIN [http://en.wikipedia.org/wiki/External_capsule] +synonym: "corpus callosum external capsule" RELATED [BAMS:ec] +synonym: "external capsule" BROAD [MA:0002896] +xref: BAMS:EC +xref: BAMS:ec +xref: DHBA:10573 +xref: DMBA:17765 +xref: EMAPA:35331 +xref: External:capsule +xref: FMA:61959 +xref: HBA:9243 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=253 +xref: http://linkedlifedata.com/resource/umls/id/C0152345 +xref: http://www.snomedbrowser.com/Codes/Details/279300007 +xref: MA:0002896 +xref: MBA:579 +xref: NCIT:C32550 +xref: NLXANAT:1010013 +xref: UMLS:C0152345 {source="ncithesaurus:External_Capsule"} +is_a: UBERON:0002437 ! cerebral hemisphere white matter + +[Term] +id: UBERON:0004546 +name: cribriform plate +def: "A zone of the ethmoid that is received into the ethmoidal notch of the frontal bone and roofs in the nasal cavities. [WP,modified]." [http://en.wikipedia.org/wiki/Cribriform_plate] +synonym: "cribiform plate of ethmoid bone" EXACT [http://en.wikipedia.org/wiki/Cribriform_plate] +synonym: "ethmoid bone lamina cribrosa" RELATED [BTO:0004141] +synonym: "horizontal lamina of ethmoid bone" EXACT [http://en.wikipedia.org/wiki/Cribriform_plate] +synonym: "lamina cribrosa of ethmoid bone" RELATED [BTO:0004141] +synonym: "lamina cribrosa ossis ethmoidalis" RELATED LATIN [http://en.wikipedia.org/wiki/Cribriform_plate] +xref: BTO:0004141 +xref: Cribriform:plate +xref: EMAPA:19201 +xref: FMA:52890 +xref: http://www.snomedbrowser.com/Codes/Details/282814006 +xref: MA:0002898 +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0001679 {source="MA"} ! ethmoid bone + +[Term] +id: UBERON:0004547 +name: decidua capsularis +def: "The layer of uterine endometrium overlying the implanted chorionic vesicle and facing the uterine cavity" [MP:0012530] +subset: pheno_slim +synonym: "antimesometrial decidua" RELATED [EMAPA:35271] +xref: EMAPA:35271 +xref: FMA:86478 +xref: http://linkedlifedata.com/resource/umls/id/C0230964 +xref: http://www.snomedbrowser.com/Codes/Details/255498003 +xref: MA:0002906 +xref: NCIT:C32427 +xref: UMLS:C0230964 {source="ncithesaurus:Decidua_Capsularis"} +is_a: UBERON:0000478 ! extraembryonic structure +relationship: part_of UBERON:0002450 ! decidua + +[Term] +id: UBERON:0004548 +name: left eye +def: "An eye that is part of a left side of organism [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "left eyeball" EXACT [FMA:12515] +synonym: "left orbital part of face" NARROW [FMA:54450] +synonym: "left orbital region" NARROW [FMA:54450] +xref: EMAPA:37362 {source="MA:th"} +xref: FMA:12515 +xref: http://www.snomedbrowser.com/Codes/Details/362503005 +xref: MA:0002949 +xref: NCIT:C119334 +is_a: UBERON:0000970 ! eye +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0000970 ! eye +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0004549 +name: right eye +def: "An eye that is part of a right side of organism [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "right eyeball" EXACT [FMA:12514] +synonym: "right orbital part of face" NARROW [FMA:54449] +synonym: "right orbital region" NARROW [FMA:54449] +xref: EMAPA:37363 {source="MA:th"} +xref: FMA:12514 +xref: http://www.snomedbrowser.com/Codes/Details/362502000 +xref: MA:0002950 +xref: NCIT:C119333 +is_a: UBERON:0000970 ! eye +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0000970 ! eye +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: in_right_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0004550 +name: gastroesophageal sphincter +def: "the thick circular layer of smooth gastric musculature encircling the gastroesophageal junction that functions to reduce backflow into the esophagus from the stomach" [ISBN:0-683-40008-8, MP:0010153] +subset: pheno_slim +synonym: "cardiac sphincter" EXACT [MA:0002951, MP:0010153] +synonym: "cardiac sphincter" RELATED [http://en.wikipedia.org/wiki/Cardia] +synonym: "constrictor cardiae" RELATED LATIN [MP:0010153] +synonym: "esophageal sphincter" RELATED [http://en.wikipedia.org/wiki/Cardia] +synonym: "esophageal sphincter%2c lower" RELATED [http://en.wikipedia.org/wiki/Cardia] +synonym: "esophageal-cardiac junction" RELATED [http://en.wikipedia.org/wiki/Cardia] +synonym: "esophagogastric junction" RELATED [http://en.wikipedia.org/wiki/Cardia] +synonym: "gastro-esophageal junction" RELATED [http://en.wikipedia.org/wiki/Cardia] +synonym: "gastro-esophageal sphincter" RELATED [http://en.wikipedia.org/wiki/Cardia] +synonym: "gastro-oesophageal junction" RELATED [http://en.wikipedia.org/wiki/Cardia] +synonym: "gastroesophageal junction" RELATED [http://en.wikipedia.org/wiki/Cardia] +synonym: "gastroesophageal sphincter" EXACT [FMA:14915] +synonym: "gastroesophageal sphincter" RELATED [http://en.wikipedia.org/wiki/Cardia] +synonym: "gastroesophageal sphincter muscle" EXACT [] +synonym: "inferior esophageal sphincter" EXACT [FMA:14915] +synonym: "LES" RELATED ABBREVIATION [http://en.wikipedia.org/wiki/Cardia] +synonym: "lower esophageal sphincter" RELATED [MA:0002951] +synonym: "lower esophageal sphincter" RELATED [http://en.wikipedia.org/wiki/Cardia] +xref: EMAPA:18267 +xref: FMA:14915 +xref: galen:LowerEsophagealSphincter +xref: http://linkedlifedata.com/resource/umls/id/C0227192 +xref: http://www.snomedbrowser.com/Codes/Details/267809009 +xref: MA:0002951 +xref: NCIT:C33009 +xref: UMLS:C0227192 {source="ncithesaurus:Lower_Esophageal_Sphincter"} +is_a: UBERON:0011185 ! gastrointestinal sphincter +intersection_of: UBERON:0004590 {source="MA"} ! sphincter muscle +intersection_of: part_of UBERON:0001162 {source="MA"} ! cardia of stomach +relationship: contributes_to_morphology_of UBERON:0001162 ! cardia of stomach +relationship: part_of UBERON:0001162 ! cardia of stomach + +[Term] +id: UBERON:0004551 +name: obsolete set of proper plantar digital arteries +synonym: "arteriae digitales plantares propriae" EXACT LATIN [FMA:71564, FMA:TA] +synonym: "plantar digital arteries proper" EXACT [FMA:71564] +synonym: "plantar digital arteries proper set" EXACT [FMA:71564] +is_obsolete: true +consider: FMA:71564 + +[Term] +id: UBERON:0004552 +name: digital artery +def: "An artery that is part of a digit [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:37076 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/181335004 +xref: MA:0001941 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003514 ! limb blood vessel +intersection_of: UBERON:0001637 ! artery +intersection_of: part_of UBERON:0002544 ! digit +relationship: part_of UBERON:0002544 ! digit + +[Term] +id: UBERON:0004553 +name: forelimb digital artery +def: "A digital artery that is part of a forelimb [Automatically generated definition]." [OBOL:automatic] +synonym: "digital artery of manus" EXACT [] +synonym: "forelimb digital arteries" EXACT [MA:0001953] +synonym: "wing digital artery" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +xref: EMAPA:37210 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/265791006 +xref: MA:0001953 +is_a: UBERON:0003522 ! manual digit blood vessel +is_a: UBERON:0004552 ! digital artery +intersection_of: UBERON:0004552 ! digital artery +intersection_of: part_of UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0004554 +name: hindlimb digital artery +def: "A digital artery that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] +synonym: "digital artery of foot" EXACT [FMA:69713] +synonym: "hindlimb digital arteries" EXACT [MA:0001964] +xref: EMAPA:37214 {source="MA:th"} +xref: FMA:69713 +xref: MA:0001964 +is_a: UBERON:0003516 ! hindlimb blood vessel +is_a: UBERON:0004552 ! digital artery +intersection_of: UBERON:0004552 ! digital artery +intersection_of: part_of UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0004561 +name: proper palmar digital vein +comment: Some sources distinguish between the "proper palmar digital veins", which are more distal, and the "common palmar digital veins", which are more proximal. +synonym: "common palmar digital venous tributary" EXACT [FMA:22926] +synonym: "distal palmar digital vein" EXACT [http://en.wikipedia.org/wiki/Palmar_digital_veins] +synonym: "proper palmal vein" EXACT [MA:0002126] +synonym: "proper palmar vein" EXACT [MA:0002126] +synonym: "tributary of common palmar digital vein" EXACT [FMA:22926] +xref: EMAPA:37229 {source="MA:th"} +xref: FMA:22926 +xref: MA:0002126 +is_a: UBERON:0004563 ! forelimb digital vein +relationship: part_of UBERON:0001412 ! common palmar digital vein +relationship: tributary_of UBERON:0001412 {source="FMA/obol"} ! common palmar digital vein + +[Term] +id: UBERON:0004562 +name: digital vein +def: "Any vein containing deoxygenated blood that is located in a finger or toe." [ncithesaurus:Digital_Vein] +xref: EMAPA:37141 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C0447128 +xref: MA:0002101 +xref: NCIT:C53043 +xref: UMLS:C0447128 {source="ncithesaurus:Digital_Vein"} +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003514 ! limb blood vessel +relationship: part_of UBERON:0002470 ! autopod region + +[Term] +id: UBERON:0004563 +name: forelimb digital vein +def: "A digital vein that is part of a forelimb." [OBOL:automatic] +synonym: "forelimb digital veins" EXACT [MA:0002120] +synonym: "vein of finger" EXACT [] +synonym: "vein of manual digit" EXACT [] +synonym: "wing digital vein" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +xref: EMAPA:37223 {source="MA:th"} +xref: MA:0002120 +is_a: UBERON:0003523 ! manus blood vessel +is_a: UBERON:0004562 ! digital vein +intersection_of: UBERON:0004562 ! digital vein +intersection_of: part_of UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0004564 +name: hindlimb digital vein +def: "A digital vein that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] +synonym: "hindlimb digital veins" EXACT [MA:0002133] +synonym: "vein of pedal digit" EXACT [] +synonym: "vein of toe" EXACT [] +xref: EMAPA:37224 {source="MA:th"} +xref: MA:0002133 +is_a: UBERON:0003521 ! pes blood vessel +is_a: UBERON:0004562 ! digital vein +intersection_of: UBERON:0004562 ! digital vein +intersection_of: part_of UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0004571 +name: systemic arterial system +def: "The part of the arterial system which carries oxygenated blood away from the heart to the body, and returns deoxygenated blood back to the heart." [http://en.wikipedia.org/wiki/Systemic_circulation#Arteries, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "systemic arterial circulatory system" EXACT [FMA:45623] +xref: Arteries +xref: FMA:45623 +is_a: UBERON:0007798 {source="MA-inferred"} ! vascular system +relationship: part_of UBERON:0004572 ! arterial system + +[Term] +id: UBERON:0004572 +name: arterial system +def: "The part of the cardiovascular system consisting of all arteries." [https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +xref: BTO:0004690 +xref: EHDAA2:0000143 +xref: EHDAA:396 +xref: EMAPA:16201 +xref: EMAPA:16371 +xref: http://www.snomedbrowser.com/Codes/Details/362030008 +xref: MA:0002719 +xref: VHOG:0000273 +is_a: UBERON:0007798 {source="MA"} ! vascular system +relationship: has_member UBERON:0001637 ! artery + +[Term] +id: UBERON:0004573 +name: systemic artery +def: "An artery of the systemic circulation, which is the part of the cardiovascular system which carries oxygenated blood away from the heart, to the body, and returns deoxygenated blood back to the heart." [http://en.wikipedia.org/wiki/Artery#Systemic_arteries, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "systemic arterial subtree" EXACT [FMA:66464] +xref: EMAPA:37126 {source="MA:th"} +xref: FMA:66464 +xref: Systemic_arteries +is_a: UBERON:0001637 ! artery +intersection_of: UBERON:0001637 ! artery +intersection_of: part_of UBERON:0004571 ! systemic arterial system +relationship: part_of UBERON:0004571 ! systemic arterial system + +[Term] +id: UBERON:0004581 +name: systemic venous system +def: "The part of the venous system that drains the general body tissues[Kardong]" [http://en.wikipedia.org/wiki/Systemic_venous_system, ISBN:0073040584] +synonym: "systemic venous circulatory system" EXACT [FMA:45626] +xref: FMA:45626 +xref: http://en.wikipedia.org/wiki/Systemic_venous_system +is_a: UBERON:0002049 ! vasculature +relationship: part_of UBERON:0004582 ! venous system + +[Term] +id: UBERON:0004582 +name: venous system +def: "The part of the cardiovascular system consisting of all venous vessels. In vertebrates with a double circulation, this can be divided into systemic and pulmonary portions." [https://orcid.org/0000-0002-6601-2165] +synonym: "vein system" EXACT [] +xref: BTO:0004692 +xref: EHDAA2:0002171 +xref: EHDAA:486 +xref: EMAPA:16240 +xref: http://linkedlifedata.com/resource/umls/id/C1267406 +xref: http://www.snomedbrowser.com/Codes/Details/362060003 +xref: MA:0002720 +xref: NCIT:C33858 +xref: UMLS:C1267406 {source="ncithesaurus:Venous_System"} +xref: VHOG:0000277 +is_a: UBERON:0007798 {source="MA"} ! vascular system +relationship: composed_primarily_of UBERON:0001638 ! vein + +[Term] +id: UBERON:0004590 +name: sphincter muscle +def: "A structure, usually a circular muscle, that normally maintains constriction of a natural body passage or orifice and which relaxes as required by normal physiological functioning." [http://en.wikipedia.org/wiki/Sphincter] +synonym: "circular muscle" RELATED [] +synonym: "sphincter" EXACT [] +xref: FMA:75004 +xref: http://en.wikipedia.org/wiki/Sphincter +xref: http://linkedlifedata.com/resource/umls/id/C1409894 +xref: NCIT:C28381 +xref: UMLS:C1409894 {source="ncithesaurus:Sphincter"} +is_a: UBERON:0001630 ! muscle organ + +[Term] +id: UBERON:0004601 +name: rib 1 +def: "The first rib of the rib cage" [http://orcid.org/0000-0002-6601-2165] +subset: defined_by_ordinal_series +subset: pheno_slim +synonym: "costa I" EXACT LATIN [] +synonym: "costa prima" RELATED LATIN [http://en.wikipedia.org/wiki/First_rib] +synonym: "costa prima (I)" EXACT [FMA:7597] +synonym: "costa prima [I]" EXACT LATIN [FMA:7597, FMA:TA] +synonym: "first rib" EXACT [FMA:7597] +xref: EMAPA:19529 +xref: First:rib +xref: FMA:7597 +xref: http://linkedlifedata.com/resource/umls/id/C1709945 +xref: http://www.snomedbrowser.com/Codes/Details/182016005 +xref: MA:0001401 +xref: NCIT:C52770 +xref: UMLS:C1709945 {source="ncithesaurus:Rib_1"} +is_a: UBERON:0002228 ! rib + +[Term] +id: UBERON:0004602 +name: rib 2 +def: "The second rib of the rib cage" [http://orcid.org/0000-0002-6601-2165] +subset: defined_by_ordinal_series +synonym: "costa II" EXACT LATIN [] +synonym: "costa secunda" RELATED LATIN [http://en.wikipedia.org/wiki/Second_rib] +synonym: "costa secunda (II)" EXACT [FMA:7620] +synonym: "costa secunda [II]" EXACT LATIN [FMA:7620, FMA:TA] +synonym: "second rib" EXACT [FMA:7620] +xref: EMAPA:19530 +xref: FMA:7620 +xref: http://linkedlifedata.com/resource/umls/id/C1709949 +xref: http://www.snomedbrowser.com/Codes/Details/244656007 +xref: MA:0001402 +xref: NCIT:C52766 +xref: Second:rib +xref: UMLS:C1709949 {source="ncithesaurus:Rib_2"} +is_a: UBERON:0002228 ! rib + +[Term] +id: UBERON:0004603 +name: rib 3 +def: "The third rib counting from the top of the rib cage down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Rib_3] +subset: defined_by_ordinal_series +synonym: "costa III" EXACT LATIN [] +synonym: "third rib" EXACT [FMA:7638] +xref: EMAPA:19531 +xref: FMA:7638 +xref: http://linkedlifedata.com/resource/umls/id/C1709950 +xref: http://www.snomedbrowser.com/Codes/Details/244658008 +xref: MA:0001403 +xref: NCIT:C52765 +xref: UMLS:C1709950 {source="ncithesaurus:Rib_3"} +is_a: UBERON:0002228 ! rib + +[Term] +id: UBERON:0004604 +name: rib 4 +def: "The fourth rib counting from the top of the rib cage down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Rib_4] +subset: defined_by_ordinal_series +synonym: "costa IV" EXACT LATIN [] +synonym: "fourth rib" EXACT [FMA:7749] +xref: EMAPA:19532 +xref: FMA:7749 +xref: http://linkedlifedata.com/resource/umls/id/C1709951 +xref: http://www.snomedbrowser.com/Codes/Details/244659000 +xref: MA:0001404 +xref: NCIT:C52764 +xref: UMLS:C1709951 {source="ncithesaurus:Rib_4"} +is_a: UBERON:0002228 ! rib + +[Term] +id: UBERON:0004605 +name: rib 5 +def: "The fifth rib counting from the top of the rib cage down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Rib_5] +subset: defined_by_ordinal_series +synonym: "costa V" EXACT LATIN [] +synonym: "fifth rib" EXACT [FMA:7776] +xref: EMAPA:19533 +xref: FMA:7776 +xref: http://linkedlifedata.com/resource/umls/id/C1711376 +xref: http://www.snomedbrowser.com/Codes/Details/244660005 +xref: MA:0001405 +xref: NCIT:C52763 +xref: UMLS:C1711376 {source="ncithesaurus:Rib_5"} +is_a: UBERON:0002228 ! rib + +[Term] +id: UBERON:0004606 +name: rib 6 +def: "The sixth rib counting from the top of the rib cage down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Rib_6] +subset: defined_by_ordinal_series +synonym: "costa VI" EXACT LATIN [] +synonym: "sixth rib" EXACT [FMA:8147] +xref: EMAPA:19534 +xref: FMA:8147 +xref: http://linkedlifedata.com/resource/umls/id/C1709952 +xref: http://www.snomedbrowser.com/Codes/Details/244661009 +xref: MA:0001406 +xref: NCIT:C52762 +xref: UMLS:C1709952 {source="ncithesaurus:Rib_6"} +is_a: UBERON:0002228 ! rib + +[Term] +id: UBERON:0004607 +name: rib 7 +def: "The seventh rib counting from the top of the rib cage down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Rib_7] +subset: defined_by_ordinal_series +synonym: "costa VII" EXACT LATIN [] +synonym: "seventh rib" EXACT [FMA:7830] +xref: EMAPA:19535 +xref: FMA:7830 +xref: http://linkedlifedata.com/resource/umls/id/C1709953 +xref: http://www.snomedbrowser.com/Codes/Details/244662002 +xref: MA:0001407 +xref: NCIT:C52761 +xref: UMLS:C1709953 {source="ncithesaurus:Rib_7"} +is_a: UBERON:0002228 ! rib + +[Term] +id: UBERON:0004608 +name: rib 9 +def: "The ninth rib counting from the top of the rib cage down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Rib_9] +subset: defined_by_ordinal_series +synonym: "costa IX" EXACT LATIN [] +synonym: "lower false rib" NARROW [NCBITaxon:9606, PMCID:PMC1327870] +synonym: "ninth rib" EXACT [FMA:8337] +xref: EMAPA:19537 +xref: FMA:8337 +xref: http://linkedlifedata.com/resource/umls/id/C1709955 +xref: http://www.snomedbrowser.com/Codes/Details/244664001 +xref: MA:0001409 +xref: NCIT:C52759 +xref: UMLS:C1709955 {source="ncithesaurus:Rib_9"} +is_a: UBERON:0002228 ! rib + +[Term] +id: UBERON:0004609 +name: rib 10 +def: "The tenth rib has only a single articular facet on its head. [WP,unvetted]." [http://en.wikipedia.org/wiki/Tenth_rib] +subset: defined_by_ordinal_series +synonym: "costa X" EXACT LATIN [] +synonym: "tenth rib" EXACT [FMA:8418] +xref: EMAPA:19538 +xref: FMA:8418 +xref: http://linkedlifedata.com/resource/umls/id/C1709946 +xref: http://www.snomedbrowser.com/Codes/Details/244665000 +xref: MA:0001410 +xref: NCIT:C52769 +xref: Tenth:rib +xref: UMLS:C1709946 {source="ncithesaurus:Rib_10"} +is_a: UBERON:0002228 ! rib + +[Term] +id: UBERON:0004610 +name: rib 11 +def: "The eleventh rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The eleventh has a slight angle and a shallow costal groove. [WP,unvetted]." [http://en.wikipedia.org/wiki/Eleventh_rib] +subset: defined_by_ordinal_series +synonym: "costa XI" EXACT LATIN [] +synonym: "eleventh rib" EXACT [FMA:8499] +xref: Eleventh:rib +xref: EMAPA:19539 +xref: FMA:8499 +xref: http://linkedlifedata.com/resource/umls/id/C1709947 +xref: http://www.snomedbrowser.com/Codes/Details/244666004 +xref: MA:0001411 +xref: NCIT:C52768 +xref: UMLS:C1709947 {source="ncithesaurus:Rib_11"} +is_a: UBERON:0002228 ! rib + +[Term] +id: UBERON:0004611 +name: rib 12 +def: "In humans: The twelfth rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The twelfth has angle nor costal groove; it is much shorter than the eleventh rib, and its head is inclined slightly downward. Sometimes the twelfth rib is even shorter than the first rib. [WP,unvetted]." [http://en.wikipedia.org/wiki/Twelfth_rib] +subset: defined_by_ordinal_series +subset: pheno_slim +synonym: "costa XII" EXACT LATIN [] +synonym: "twelfth rib" EXACT [FMA:8515] +xref: EMAPA:19540 +xref: FMA:8515 +xref: http://linkedlifedata.com/resource/umls/id/C1709948 +xref: http://www.snomedbrowser.com/Codes/Details/244667008 +xref: MA:0001412 +xref: NCIT:C52767 +xref: Twelfth:rib +xref: UMLS:C1709948 {source="ncithesaurus:Rib_12"} +is_a: UBERON:0002228 ! rib + +[Term] +id: UBERON:0004612 +name: mammalian cervical vertebra 3 +def: "The third of the seven cervical vertebrae[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:C3_Vertebra] +subset: defined_by_ordinal_series +subset: pheno_slim +synonym: "C3 vertebra" EXACT [FMA:12521] +synonym: "cervical vertebra 3" EXACT [MA:0001423] +synonym: "cervical vertebrae 3" EXACT [UBERONTEMP:aeb6ac70-fd18-403d-a0b9-dd03942c7812] +synonym: "third cervical vertebra" EXACT [FMA:12521] +synonym: "third cervical vertebra of axial skeleton" EXACT [UBERONTEMP:aeb6ac70-fd18-403d-a0b9-dd03942c7812] +xref: EMAPA:19433 +xref: FMA:12521 +xref: http://linkedlifedata.com/resource/umls/id/C0459939 +xref: http://www.snomedbrowser.com/Codes/Details/181823007 +xref: MA:0001423 +xref: NCIT:C32241 +xref: UMLS:C0459939 {source="ncithesaurus:C3_Vertebra"} +is_a: UBERON:0002413 ! cervical vertebra +relationship: anteriorly_connected_to UBERON:0001093 {source="FMA"} ! vertebral bone 2 + +[Term] +id: UBERON:0004613 +name: mammalian cervical vertebra 4 +def: "The fourth of the seven cervical vertebrae[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:C4_Vertebra] +subset: defined_by_ordinal_series +subset: pheno_slim +synonym: "C4 vertebra" EXACT [FMA:12522] +synonym: "cervical vertebra 4" EXACT [MA:0001424] +synonym: "fourth cervical vertebra" EXACT [FMA:12522] +xref: EMAPA:19434 +xref: FMA:12522 +xref: http://linkedlifedata.com/resource/umls/id/C0459941 +xref: http://www.snomedbrowser.com/Codes/Details/181824001 +xref: MA:0001424 +xref: NCIT:C32242 +xref: UMLS:C0459941 {source="ncithesaurus:C4_Vertebra"} +is_a: UBERON:0002413 ! cervical vertebra +relationship: anteriorly_connected_to UBERON:0004612 {source="FMA"} ! mammalian cervical vertebra 3 + +[Term] +id: UBERON:0004614 +name: mammalian cervical vertebra 5 +def: "The fifth of the seven cervical vertebrae[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:C5_Vertebra] +subset: defined_by_ordinal_series +subset: pheno_slim +synonym: "C5 vertebra" EXACT [FMA:12523] +synonym: "cervical vertebra 5" EXACT [MA:0001425] +synonym: "fifth cervical vertebra" EXACT [FMA:12523] +xref: EMAPA:19435 +xref: FMA:12523 +xref: http://linkedlifedata.com/resource/umls/id/C0459943 +xref: http://www.snomedbrowser.com/Codes/Details/181825000 +xref: MA:0001425 +xref: NCIT:C32243 +xref: UMLS:C0459943 {source="ncithesaurus:C5_Vertebra"} +is_a: UBERON:0002413 ! cervical vertebra +relationship: anteriorly_connected_to UBERON:0004613 {source="FMA"} ! mammalian cervical vertebra 4 + +[Term] +id: UBERON:0004615 +name: mammalian cervical vertebra 6 +def: "The sixth of the seven cervical vertebrae[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:C6_Vertebra] +subset: defined_by_ordinal_series +subset: pheno_slim +synonym: "C6 vertebra" EXACT [FMA:12524] +synonym: "cervical vertebra 6" EXACT [MA:0001426] +synonym: "sixth cervical vertebra" EXACT [FMA:12524] +xref: EMAPA:19466 +xref: FMA:12524 +xref: http://linkedlifedata.com/resource/umls/id/C0459944 +xref: http://www.snomedbrowser.com/Codes/Details/181826004 +xref: MA:0001426 +xref: NCIT:C32244 +xref: UMLS:C0459944 {source="ncithesaurus:C6_Vertebra"} +is_a: UBERON:0002413 ! cervical vertebra +relationship: anteriorly_connected_to UBERON:0004614 {source="FMA"} ! mammalian cervical vertebra 5 + +[Term] +id: UBERON:0004616 +name: mammalian cervical vertebra 7 +def: "Vertebra prominens is the proper name for the seventh cervical vertebra. The most distinctive characteristic of this vertebra is the existence of a long and prominent spinous process which is palpable from the skin surface, hence the name. This spinous process is thick, nearly horizontal in direction, not bifurcated, but terminating in a tubercle to which the lower end of the ligamentum nuchae is attached. The seventh cervical vertebra (C7) has the most prominent spinous process only in about 70% of people; in the remainder, either C6 or T1 (the first thoracic vertebra) will be the most prominent. The transverse processes are of considerable size, their posterior roots are large and prominent, while the anterior are small and faintly marked; the upper surface of each has usually a shallow sulcus for the eighth spinal nerve, and its extremity seldom presents more than a trace of bifurcation. The foramen transversarium may be as large as that in the other cervical vertebrae, but is generally smaller on one or both sides; occasionally it is double, sometimes it is absent. On the left side it occasionally gives passage to the vertebral artery; more frequently the vertebral vein traverses it on both sides; but the usual arrangement is for both artery and vein to pass in front of the transverse process, and not through the foramen. Sometimes the anterior root of the transverse process attains a large size and exists as a separate bone, which is known as a cervical rib." [http://en.wikipedia.org/wiki/Vertebra_prominens] +subset: defined_by_ordinal_series +synonym: "C7 vertebra" EXACT [FMA:12525] +synonym: "cervical vertebra 7" EXACT [MA:0001427] +synonym: "prominent vertebra" EXACT [FMA:12525] +synonym: "seventh cervical vertebra" EXACT [FMA:12525] +synonym: "vertebra prominens (CVII)" EXACT [FMA:12525] +synonym: "vertebra prominens [C VII]" EXACT LATIN [FMA:12525, FMA:TA] +xref: EMAPA:19467 +xref: FMA:12525 +xref: http://linkedlifedata.com/resource/umls/id/C0223176 +xref: http://www.snomedbrowser.com/Codes/Details/181827008 +xref: MA:0001427 +xref: NCIT:C32245 +xref: UMLS:C0223176 {source="ncithesaurus:C7_Vertebra"} +xref: Vertebra:prominens +is_a: UBERON:0002413 ! cervical vertebra +relationship: anteriorly_connected_to UBERON:0004615 {source="FMA"} ! mammalian cervical vertebra 6 + +[Term] +id: UBERON:0004617 +name: lumbar vertebra 1 +def: "The first lumbar vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:L1_Vertebra] +subset: defined_by_ordinal_series +synonym: "first lumbar vertebra" EXACT [FMA:13072] +synonym: "L1 vertebra" EXACT [FMA:13072] +xref: EMAPA:19472 +xref: FMA:13072 +xref: http://linkedlifedata.com/resource/umls/id/C0223492 +xref: http://www.snomedbrowser.com/Codes/Details/181841004 +xref: MA:0001428 +xref: NCIT:C32899 +xref: UMLS:C0223492 {source="ncithesaurus:L1_Vertebra"} +is_a: UBERON:0002414 ! lumbar vertebra + +[Term] +id: UBERON:0004618 +name: lumbar vertebra 2 +def: "The second lumbar vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:L2_Vertebra] +subset: defined_by_ordinal_series +subset: pheno_slim +synonym: "L2 vertebra" EXACT [FMA:13073] +synonym: "second lumbar vertebra" EXACT [FMA:13073] +xref: EMAPA:19570 +xref: FMA:13073 +xref: http://linkedlifedata.com/resource/umls/id/C0223507 +xref: http://www.snomedbrowser.com/Codes/Details/181842006 +xref: MA:0001429 +xref: NCIT:C32900 +xref: UMLS:C0223507 {source="ncithesaurus:L2_Vertebra"} +is_a: UBERON:0002414 ! lumbar vertebra +relationship: anteriorly_connected_to UBERON:0004617 {source="FMA"} ! lumbar vertebra 1 + +[Term] +id: UBERON:0004619 +name: lumbar vertebra 3 +def: "The third lumbar vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:L3_Vertebra] +subset: defined_by_ordinal_series +subset: pheno_slim +synonym: "L3 vertebra" EXACT [FMA:13074] +synonym: "third lumbar vertebra" EXACT [FMA:13074] +xref: EMAPA:19571 +xref: FMA:13074 +xref: http://linkedlifedata.com/resource/umls/id/C0223522 +xref: http://www.snomedbrowser.com/Codes/Details/181843001 +xref: MA:0001430 +xref: NCIT:C32901 +xref: UMLS:C0223522 {source="ncithesaurus:L3_Vertebra"} +is_a: UBERON:0002414 ! lumbar vertebra +relationship: anteriorly_connected_to UBERON:0004618 {source="FMA"} ! lumbar vertebra 2 + +[Term] +id: UBERON:0004620 +name: lumbar vertebra 4 +def: "The fourth lumbar vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:L4_Vertebra] +subset: defined_by_ordinal_series +synonym: "fourth lumbar vertebra" EXACT [FMA:13075] +synonym: "L4 vertebra" EXACT [FMA:13075] +xref: EMAPA:19572 +xref: FMA:13075 +xref: http://linkedlifedata.com/resource/umls/id/C0223537 +xref: http://www.snomedbrowser.com/Codes/Details/181844007 +xref: MA:0001431 +xref: NCIT:C32902 +xref: UMLS:C0223537 {source="ncithesaurus:L4_Vertebra"} +is_a: UBERON:0002414 ! lumbar vertebra +relationship: anteriorly_connected_to UBERON:0004619 {source="FMA"} ! lumbar vertebra 3 + +[Term] +id: UBERON:0004621 +name: lumbar vertebra 5 +def: "The fifth lumbar vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:L5_Vertebra] +subset: defined_by_ordinal_series +subset: pheno_slim +synonym: "fifth lumbar vertebra" EXACT [FMA:13076] +synonym: "L5 vertebra" EXACT [FMA:13076] +xref: EMAPA:19573 +xref: FMA:13076 +xref: http://linkedlifedata.com/resource/umls/id/C0223552 +xref: http://www.snomedbrowser.com/Codes/Details/181845008 +xref: MA:0001432 +xref: NCIT:C32903 +xref: UMLS:C0223552 {source="ncithesaurus:L5_Vertebra"} +is_a: UBERON:0002414 ! lumbar vertebra +relationship: anteriorly_connected_to UBERON:0004620 {source="FMA"} ! lumbar vertebra 4 + +[Term] +id: UBERON:0004622 +name: sacral vertebra 1 +subset: defined_by_ordinal_series +synonym: "first sacral segment" EXACT [FMA:13077] +synonym: "first sacral vertebra" EXACT [FMA:13077] +synonym: "first segment of sacrum" EXACT [FMA:13077] +synonym: "S1 vertebra" EXACT [FMA:13077] +xref: EMAPA:19588 +xref: FMA:13077 +xref: http://linkedlifedata.com/resource/umls/id/C0223598 +xref: http://www.snomedbrowser.com/Codes/Details/181846009 +xref: MA:0001434 +xref: NCIT:C33498 +xref: UMLS:C0223598 {source="ncithesaurus:S1_Vertebra"} +is_a: UBERON:0001094 ! sacral vertebra + +[Term] +id: UBERON:0004623 +name: sacral vertebra 2 +subset: defined_by_ordinal_series +synonym: "S2 vertebra" EXACT [FMA:13078] +synonym: "second sacral segment" EXACT [FMA:13078] +synonym: "second sacral vertebra" EXACT [FMA:13078] +synonym: "second segment of sacrum" EXACT [FMA:13078] +xref: EMAPA:19589 +xref: FMA:13078 +xref: http://linkedlifedata.com/resource/umls/id/C0223599 +xref: http://www.snomedbrowser.com/Codes/Details/181847000 +xref: MA:0001435 +xref: NCIT:C33499 +xref: UMLS:C0223599 {source="ncithesaurus:S2_Vertebra"} +is_a: UBERON:0001094 ! sacral vertebra + +[Term] +id: UBERON:0004624 +name: sacral vertebra 3 +subset: defined_by_ordinal_series +synonym: "S3 vertebra" EXACT [FMA:13079] +synonym: "third sacral segment" EXACT [FMA:13079] +synonym: "third sacral vertebra" EXACT [FMA:13079] +synonym: "third segment of sacrum" EXACT [FMA:13079] +xref: EMAPA:19590 +xref: FMA:13079 +xref: http://linkedlifedata.com/resource/umls/id/C0223600 +xref: http://www.snomedbrowser.com/Codes/Details/181848005 +xref: MA:0001436 +xref: NCIT:C33500 +xref: UMLS:C0223600 {source="ncithesaurus:S3_Vertebra"} +is_a: UBERON:0001094 ! sacral vertebra + +[Term] +id: UBERON:0004625 +name: sacral vertebra 4 +subset: defined_by_ordinal_series +synonym: "fourth sacral segment" EXACT [FMA:13080] +synonym: "fourth sacral vertebra" EXACT [FMA:13080] +synonym: "fourth segment of sacrum" EXACT [FMA:13080] +synonym: "S4 vertebra" EXACT [FMA:13080] +xref: EMAPA:19591 +xref: FMA:13080 +xref: http://linkedlifedata.com/resource/umls/id/C0223601 +xref: http://www.snomedbrowser.com/Codes/Details/181849002 +xref: MA:0001437 +xref: NCIT:C33501 +xref: UMLS:C0223601 {source="ncithesaurus:S4_Vertebra"} +is_a: UBERON:0001094 ! sacral vertebra + +[Term] +id: UBERON:0004626 +name: thoracic vertebra 1 +def: "The first thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T1_Vertebra] +subset: defined_by_ordinal_series +synonym: "first dorsal vertebra" EXACT [FMA:9165] +synonym: "first thoracic vertebra" EXACT [FMA:9165] +synonym: "T1 vertebra" EXACT [FMA:9165] +xref: EMAPA:19542 +xref: FMA:9165 +xref: http://linkedlifedata.com/resource/umls/id/C0459933 +xref: http://www.snomedbrowser.com/Codes/Details/181828003 +xref: MA:0001438 +xref: NCIT:C33720 +xref: UMLS:C0459933 {source="ncithesaurus:T1_Vertebra"} +is_a: UBERON:0002347 ! thoracic vertebra + +[Term] +id: UBERON:0004627 +name: thoracic vertebra 2 +def: "The second thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T2_Vertebra] +subset: defined_by_ordinal_series +synonym: "second dorsal vertebra" EXACT [FMA:9187] +synonym: "second thoracic vertebra" EXACT [FMA:9187] +synonym: "T2 vertebra" EXACT [FMA:9187] +xref: EMAPA:19543 +xref: FMA:9187 +xref: http://linkedlifedata.com/resource/umls/id/C0459936 +xref: http://www.snomedbrowser.com/Codes/Details/181829006 +xref: MA:0001439 +xref: NCIT:C33724 +xref: UMLS:C0459936 {source="ncithesaurus:T2_Vertebra"} +is_a: UBERON:0002347 ! thoracic vertebra +relationship: anteriorly_connected_to UBERON:0004626 {source="FMA"} ! thoracic vertebra 1 + +[Term] +id: UBERON:0004628 +name: thoracic vertebra 3 +def: "The third thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T3_Vertebra] +subset: defined_by_ordinal_series +synonym: "T3 vertebra" EXACT [FMA:9209] +synonym: "third dorsal vertebra" EXACT [FMA:9209] +synonym: "third thoracic vertebra" EXACT [FMA:9209] +xref: EMAPA:19544 +xref: FMA:9209 +xref: http://linkedlifedata.com/resource/umls/id/C0459952 +xref: http://www.snomedbrowser.com/Codes/Details/181830001 +xref: MA:0001440 +xref: NCIT:C33725 +xref: UMLS:C0459952 {source="ncithesaurus:T3_Vertebra"} +is_a: UBERON:0002347 ! thoracic vertebra +relationship: anteriorly_connected_to UBERON:0004627 {source="FMA"} ! thoracic vertebra 2 + +[Term] +id: UBERON:0004629 +name: thoracic vertebra 4 +def: "The fourth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T4_Vertebra] +subset: defined_by_ordinal_series +synonym: "fourth dorsal vertebra" EXACT [FMA:9248] +synonym: "fourth thoracic vertebra" EXACT [FMA:9248] +synonym: "T4 vertebra" EXACT [FMA:9248] +xref: EMAPA:19545 +xref: FMA:9248 +xref: http://linkedlifedata.com/resource/umls/id/C0459951 +xref: http://www.snomedbrowser.com/Codes/Details/181831002 +xref: MA:0001441 +xref: NCIT:C33726 +xref: UMLS:C0459951 {source="ncithesaurus:T4_Vertebra"} +is_a: UBERON:0002347 ! thoracic vertebra +relationship: anteriorly_connected_to UBERON:0004628 {source="FMA"} ! thoracic vertebra 3 + +[Term] +id: UBERON:0004630 +name: thoracic vertebra 5 +def: "The fifth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T5_Vertebra] +subset: defined_by_ordinal_series +synonym: "fifth dorsal vertebra" EXACT [FMA:9922] +synonym: "fifth thoracic vertebra" EXACT [FMA:9922] +synonym: "T5 vertebra" EXACT [FMA:9922] +xref: EMAPA:19546 +xref: FMA:9922 +xref: http://linkedlifedata.com/resource/umls/id/C0459950 +xref: http://www.snomedbrowser.com/Codes/Details/181832009 +xref: MA:0001442 +xref: NCIT:C33727 +xref: UMLS:C0459950 {source="ncithesaurus:T5_Vertebra"} +is_a: UBERON:0002347 ! thoracic vertebra +relationship: anteriorly_connected_to UBERON:0004629 {source="FMA"} ! thoracic vertebra 4 + +[Term] +id: UBERON:0004631 +name: thoracic vertebra 6 +def: "The sixth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T6_Vertebra] +subset: defined_by_ordinal_series +synonym: "sixth dorsal vertebra" EXACT [FMA:9945] +synonym: "sixth thoracic vertebra" EXACT [FMA:9945] +synonym: "T6 vertebra" EXACT [FMA:9945] +xref: EMAPA:19547 +xref: FMA:9945 +xref: http://linkedlifedata.com/resource/umls/id/C0459949 +xref: http://www.snomedbrowser.com/Codes/Details/181834005 +xref: MA:0001443 +xref: NCIT:C33728 +xref: UMLS:C0459949 {source="ncithesaurus:T6_Vertebra"} +is_a: UBERON:0002347 ! thoracic vertebra +relationship: anteriorly_connected_to UBERON:0004630 {source="FMA"} ! thoracic vertebra 5 + +[Term] +id: UBERON:0004632 +name: thoracic vertebra 7 +def: "The seventh thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T7_Vertebra] +subset: defined_by_ordinal_series +synonym: "seventh dorsal vertebra" EXACT [FMA:9968] +synonym: "seventh thoracic vertebra" EXACT [FMA:9968] +synonym: "T7 vertebra" EXACT [FMA:9968] +xref: EMAPA:19548 +xref: FMA:9968 +xref: http://linkedlifedata.com/resource/umls/id/C0459947 +xref: http://www.snomedbrowser.com/Codes/Details/181835006 +xref: MA:0001444 +xref: NCIT:C33729 +xref: UMLS:C0459947 {source="ncithesaurus:T7_Vertebra"} +is_a: UBERON:0002347 ! thoracic vertebra +relationship: anteriorly_connected_to UBERON:0004631 {source="FMA"} ! thoracic vertebra 6 + +[Term] +id: UBERON:0004633 +name: thoracic vertebra 9 +def: "The ninth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T9_Vertebra] +subset: defined_by_ordinal_series +synonym: "Ninth dorsal vertebra" EXACT [FMA:10014] +synonym: "ninth thoracic vertebra" EXACT [FMA:10014] +synonym: "T9 vertebra" EXACT [FMA:10014] +xref: EMAPA:19550 +xref: FMA:10014 +xref: http://linkedlifedata.com/resource/umls/id/C0459954 +xref: http://www.snomedbrowser.com/Codes/Details/181837003 +xref: MA:0001446 +xref: NCIT:C33731 +xref: UMLS:C0459954 {source="ncithesaurus:T9_Vertebra"} +is_a: UBERON:0002347 ! thoracic vertebra +relationship: anteriorly_connected_to UBERON:0011050 {source="FMA"} ! thoracic vertebra 8 + +[Term] +id: UBERON:0004634 +name: thoracic vertebra 10 +def: "The tenth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T10_Vertebra] +subset: defined_by_ordinal_series +synonym: "T10 vertebra" EXACT [FMA:10037] +synonym: "tenth dorsal vertebra" EXACT [FMA:10037] +synonym: "tenth thoracic vertebra" EXACT [FMA:10037] +xref: EMAPA:19551 +xref: FMA:10037 +xref: http://linkedlifedata.com/resource/umls/id/C0459955 +xref: http://www.snomedbrowser.com/Codes/Details/181838008 +xref: MA:0001447 +xref: NCIT:C33721 +xref: UMLS:C0459955 {source="ncithesaurus:T10_Vertebra"} +is_a: UBERON:0002347 ! thoracic vertebra +relationship: anteriorly_connected_to UBERON:0004633 {source="FMA"} ! thoracic vertebra 9 + +[Term] +id: UBERON:0004635 +name: thoracic vertebra 11 +def: "The eleventh thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T11_Vertebra] +subset: defined_by_ordinal_series +synonym: "eleventh dorsal vertebra" EXACT [FMA:10059] +synonym: "eleventh thoracic vertebra" EXACT [FMA:10059] +synonym: "T11 vertebra" EXACT [FMA:10059] +xref: EMAPA:19552 +xref: FMA:10059 +xref: http://linkedlifedata.com/resource/umls/id/C0459956 +xref: http://www.snomedbrowser.com/Codes/Details/181839000 +xref: MA:0001448 +xref: NCIT:C33722 +xref: UMLS:C0459956 {source="ncithesaurus:T11_Vertebra"} +is_a: UBERON:0002347 ! thoracic vertebra +relationship: anteriorly_connected_to UBERON:0004634 {source="FMA"} ! thoracic vertebra 10 + +[Term] +id: UBERON:0004636 +name: thoracic vertebra 12 +def: "The twelfth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T12_Vertebra] +subset: defined_by_ordinal_series +synonym: "T12 vertebra" EXACT [FMA:10081] +synonym: "twelfth dorsal vertebra" EXACT [FMA:10081] +synonym: "twelfth thoracic vertebra" EXACT [FMA:10081] +xref: EMAPA:19553 +xref: FMA:10081 +xref: http://linkedlifedata.com/resource/umls/id/C0459957 +xref: http://www.snomedbrowser.com/Codes/Details/181840003 +xref: MA:0001449 +xref: NCIT:C33723 +xref: UMLS:C0459957 {source="ncithesaurus:T12_Vertebra"} +is_a: UBERON:0002347 ! thoracic vertebra +relationship: anteriorly_connected_to UBERON:0004635 {source="FMA"} ! thoracic vertebra 11 + +[Term] +id: UBERON:0004637 +name: otic capsule +def: "The capsule surrounding the inner ear mechanism." [http://www.biology-online.org/dictionary/Otic_capsule] +synonym: "auditory capsule" RELATED [VHOG:0000854] +synonym: "otic capsule" EXACT [ZFA:0001500] +synonym: "otic capsule element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "otic capsule endochondral element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "otic capsule skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "otic region" RELATED [] +synonym: "periotic" RELATED [] +synonym: "periotic capsule" RELATED [VHOG:0000854] +xref: AAO:0010143 +xref: http://www.snomedbrowser.com/Codes/Details/361515007 +xref: VHOG:0000854 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0001846 ! internal ear +relationship: part_of UBERON:0003110 ! otic region + +[Term] +id: UBERON:0004638 +name: blood vessel endothelium +def: "An endothelium that lines the blood vasculature. Other endothelia may line lymph vessels, the heart" [https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: vertebrate_core +xref: BTO:0000766 +xref: CALOHA:TS-2155 +xref: EMAPA:35176 +xref: http://linkedlifedata.com/resource/umls/id/C1706972 +xref: MA:0000709 +xref: NCIT:C53395 +xref: TAO:0005257 +xref: UMLS:C1706972 {source="ncithesaurus:Blood_Vessel_Endothelium"} +xref: ZFA:0005257 +is_a: UBERON:0004852 ! cardiovascular system endothelium +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0001981 ! blood vessel +relationship: part_of UBERON:0001981 ! blood vessel + +[Term] +id: UBERON:0004639 +name: renal afferent arteriole +def: "the blood vessels that branch from the kidney interlobular artery, convey blood to the glomerular capillaries, and play an important role in the regulation of blood pressure as a part of the tubuloglomerular feedback mechanism" [ISBN:0-683-40008-8, MGI:csmith, MP:0011312] +subset: pheno_slim +subset: vertebrate_core +synonym: "afferent arteriole" EXACT [MA:0002579] +synonym: "afferent glomerular arteriole" EXACT [ZFA:0005307] +synonym: "afferent glomerular arteriole of kidney" EXACT [FMA:77042] +synonym: "arteriola glomerularis afferens" RELATED LATIN [http://en.wikipedia.org/wiki/Afferent_arterioles] +synonym: "arteriola glomerularis afferens renis" EXACT LATIN [FMA:77042, FMA:TA] +synonym: "kidney afferent arteriole" EXACT [MP:0011312] +xref: Afferent:arterioles +xref: EMAPA:28230 +xref: EMAPA:28266 +xref: FMA:77042 +xref: http://www.snomedbrowser.com/Codes/Details/67498004 +xref: MA:0002579 +xref: TAO:0002139 +xref: ZFA:0005307 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0001980 ! arteriole +is_a: UBERON:0003644 ! kidney arterial blood vessel +relationship: branching_part_of UBERON:0004723 ! interlobular artery +relationship: contributes_to_morphology_of UBERON:0001229 ! renal corpuscle +relationship: part_of UBERON:0001229 ! renal corpuscle +relationship: part_of UBERON:0004723 ! interlobular artery +relationship: supplies UBERON:0001285 ! nephron + +[Term] +id: UBERON:0004640 +name: renal efferent arteriole +def: "the blood vessels that convey blood from the glomerulocapillary network to the capillary bed of the proximal convoluted tubule" [ISBN:0-683-40008-8, MGI:csmith, MP:0011313] +subset: pheno_slim +subset: vertebrate_core +synonym: "arteriola glomerularis efferens capsulae renalis" RELATED LATIN [http://en.wikipedia.org/wiki/Efferent_arteriole] +synonym: "arteriola glomerularis efferens renis" EXACT LATIN [FMA:77043, FMA:TA] +synonym: "efferent arteriole" EXACT [MA:0002585] +synonym: "efferent glomerular arteriole" EXACT [ZFA:0005308] +synonym: "efferent glomerular arteriole of kidney" EXACT [FMA:77043] +synonym: "kidney efferent arteriole" EXACT [MP:0011313] +xref: Efferent:arteriole +xref: EMAPA:28233 +xref: EMAPA:28275 +xref: FMA:77043 +xref: http://www.snomedbrowser.com/Codes/Details/29926005 +xref: MA:0002585 +xref: TAO:0002140 +xref: ZFA:0005308 +is_a: UBERON:0001980 ! arteriole +is_a: UBERON:0003644 ! kidney arterial blood vessel +relationship: contributes_to_morphology_of UBERON:0001229 ! renal corpuscle +relationship: part_of UBERON:0001229 ! renal corpuscle + +[Term] +id: UBERON:0004641 +name: spleen capsule +def: "the connective tissue that surrounds the spleen" [MGI:cwg, MP:0002227] +subset: pheno_slim +synonym: "capsula splenica" EXACT LATIN [FMA:15849, FMA:TA] +synonym: "capsule of spleen" EXACT [FMA:15849] +synonym: "fibroelastic coat of spleen" EXACT [FMA:15849] +synonym: "fibrous capsule of spleen" EXACT [FMA:15849] +synonym: "Malpighian capsule" EXACT [FMA:15849] +synonym: "splenic capsule" EXACT [FMA:15849] +synonym: "tunica fibrosa (splen)(lien)" EXACT [FMA:15849] +synonym: "tunica fibrosa splenica" EXACT LATIN [FMA:15849, FMA:TA] +xref: EMAPA:35802 +xref: FMA:15849 +xref: http://linkedlifedata.com/resource/umls/id/C0229681 +xref: http://www.snomedbrowser.com/Codes/Details/329635002 +xref: MA:0000753 +xref: NCIT:C33598 +xref: UMLS:C0229681 {source="ncithesaurus:Splenic_Capsule"} +is_a: UBERON:0003893 ! capsule +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0003893 ! capsule +intersection_of: part_of UBERON:0002106 ! spleen +relationship: contributes_to_morphology_of UBERON:0002106 ! spleen +relationship: part_of UBERON:0002106 ! spleen + +[Term] +id: UBERON:0004642 +name: third ventricle ependyma +def: "An ependyma that is part of a third ventricle [Automatically generated definition]." [OBOL:automatic] +synonym: "3rd ventricle ependyma" EXACT [MA:0000882] +synonym: "ependyma of third ventricle" EXACT [MA:0000882] +xref: EMAPA:35100 +xref: FMA:242833 +xref: http://www.snomedbrowser.com/Codes/Details/362316006 +xref: MA:0000882 +is_a: UBERON:0005357 ! brain ependyma +intersection_of: UBERON:0004670 ! ependyma +intersection_of: part_of UBERON:0002286 ! third ventricle +relationship: part_of UBERON:0002286 ! third ventricle + +[Term] +id: UBERON:0004643 +name: lateral ventricle ependyma +def: "An ependyma that is part of a lateral ventricle [Automatically generated definition]." [OBOL:automatic] +synonym: "ependyma of lateral ventricle" EXACT [FMA:242825] +xref: EMAPA:35488 +xref: FMA:242825 +xref: http://linkedlifedata.com/resource/umls/id/C0228162 +xref: http://www.snomedbrowser.com/Codes/Details/369275002 +xref: MA:0000964 +xref: NCIT:C49249 +xref: UMLS:C0228162 {source="ncithesaurus:Lateral_Ventricle_Ependyma"} +is_a: UBERON:0005357 ! brain ependyma +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0004670 ! ependyma +intersection_of: part_of UBERON:0002285 ! telencephalic ventricle +relationship: part_of UBERON:0002285 ! telencephalic ventricle + +[Term] +id: UBERON:0004644 +name: fourth ventricle ependyma +def: "An ependyma that is part of a fourth ventricle [Automatically generated definition]." [OBOL:automatic] +synonym: "4th ventricle ependyma" RELATED [MA:0000986] +synonym: "ependyma of fourth ventricle" EXACT [FMA:242835] +xref: EMAPA:35355 +xref: FMA:242835 +xref: http://linkedlifedata.com/resource/umls/id/C0228171 +xref: http://www.snomedbrowser.com/Codes/Details/369277005 +xref: MA:0000986 +xref: NCIT:C49232 +xref: UMLS:C0228171 {source="ncithesaurus:Fourth_Ventricle_Ependyma"} +is_a: UBERON:0005357 ! brain ependyma +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0004670 ! ependyma +intersection_of: part_of UBERON:0002422 ! fourth ventricle +relationship: part_of UBERON:0002422 ! fourth ventricle + +[Term] +id: UBERON:0004645 +name: urinary bladder urothelium +def: "The epithelial lining of the luminal space of the urinary bladder." [MP:0000540] +subset: pheno_slim +synonym: "bladder transitional cell epithelium" EXACT [FMA:15936] +synonym: "epithelium of bladder" RELATED [EMAPA:28601] +synonym: "transitional epithelium" RELATED [MA:0001693] +synonym: "transitional epithelium of urinary bladder" EXACT [FMA:15936] +synonym: "urinary bladder transitional epithelium" EXACT [FMA:15936] +synonym: "urothelium" BROAD [BTO:0001245] +synonym: "urothelium of urinary bladder" EXACT [FMA:15936] +xref: BTO:0001694 +xref: CALOHA:TS-1088 +xref: EMAPA:28601 +xref: FMA:15936 +xref: http://linkedlifedata.com/resource/umls/id/C0225339 +xref: http://www.snomedbrowser.com/Codes/Details/25631003 +xref: MA:0001693 +xref: NCIT:C13318 +xref: UMLS:C0225339 {source="ncithesaurus:Transitional_Epithelium"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0000365 ! urothelium +is_a: UBERON:0003350 ! epithelium of mucosa +is_a: UBERON:0012275 ! meso-epithelium +intersection_of: UBERON:0000365 ! urothelium +intersection_of: part_of UBERON:0001255 ! urinary bladder +relationship: contributes_to_morphology_of UBERON:0001255 ! urinary bladder +relationship: part_of UBERON:0001259 ! mucosa of urinary bladder + +[Term] +id: UBERON:0004646 +name: infraorbital artery +def: "The infraorbital artery is an artery in the head that runs in the maxilla, emerging through the infraorbital foramen, just under the orbit of the eye. [WP,unvetted]." [http://en.wikipedia.org/wiki/Infraorbital_artery] +synonym: "a. infraorbitalis" RELATED LATIN [http://en.wikipedia.org/wiki/Infraorbital_artery] +synonym: "infra-orbital artery" EXACT [FMA:49767] +xref: EMAPA:37090 {source="MA:th"} +xref: FMA:49767 +xref: http://linkedlifedata.com/resource/umls/id/C0226153 +xref: http://www.snomedbrowser.com/Codes/Details/148167004 +xref: Infraorbital:artery +xref: MA:0001977 +xref: NCIT:C52940 +xref: UMLS:C0226153 {source="ncithesaurus:Infraorbital_Artery"} +is_a: UBERON:0001637 ! artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: branching_part_of UBERON:0001616 ! maxillary artery +relationship: part_of UBERON:0001616 ! maxillary artery + +[Term] +id: UBERON:0004647 +name: liver lobule +def: "the polygonal structure of the liver that consists of hepatocytes radiating outward from a hepatic vein" [ISBN:0-683-40008-8, MP:0008987] +subset: pheno_slim +synonym: "hepatic lobule" EXACT [FMA:14471] +synonym: "lobules of liver" RELATED PLURAL [http://en.wikipedia.org/wiki/Lobules_of_liver] +synonym: "lobuli hepatici" EXACT PLURAL [] +synonym: "lobuli hepatis" RELATED LATIN [http://en.wikipedia.org/wiki/Lobules_of_liver] +synonym: "lobulus hepaticus" EXACT LATIN [FMA:14471] +xref: EMAPA:35499 +xref: FMA:14471 +xref: http://en.wikipedia.org/wiki/Lobules_of_liver +xref: http://linkedlifedata.com/resource/umls/id/C0227518 +xref: http://www.snomedbrowser.com/Codes/Details/362194004 +xref: MA:0002494 +xref: NCIT:C32732 +xref: UMLS:C0227518 {source="ncithesaurus:Hepatic_Lobule"} +is_a: UBERON:0000064 {source="FMA"} ! organ part +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: contributes_to_morphology_of UBERON:0001280 ! liver parenchyma +relationship: part_of UBERON:0001280 {source="FMA", source="MA"} ! liver parenchyma + +[Term] +id: UBERON:0004648 +name: esophagus muscularis mucosa +def: "A muscularis mucosa that is part of a esophagus." [OBOL:automatic] +synonym: "esophagus muscularis" RELATED [] +synonym: "esophagus muscularis mucosae" EXACT [] +synonym: "lamina muscularis mucosae (oesphagus)" EXACT LATIN [FMA:63059, FMA:TA] +synonym: "lamina muscularis of esophageal mucous membrane" EXACT [FMA:63059] +synonym: "muscularis mucosae of esophagus" EXACT [FMA:63059] +xref: EMAPA:26989 +xref: FMA:63059 +xref: http://linkedlifedata.com/resource/umls/id/C0227177 +xref: http://www.snomedbrowser.com/Codes/Details/47720007 +xref: MA:0002681 +xref: NCIT:C32540 +xref: UMLS:C0227177 {source="ncithesaurus:Esophageal_Muscularis_Mucosa"} +is_a: UBERON:0002112 ! smooth muscle of esophagus +is_a: UBERON:0006676 ! muscularis mucosa +intersection_of: UBERON:0006676 ! muscularis mucosa +intersection_of: part_of UBERON:0001043 ! esophagus +relationship: part_of UBERON:0002469 ! esophagus mucosa + +[Term] +id: UBERON:0004649 +name: sphenoid bone pterygoid process +def: "the process projecting downward from either side of the sphenoid bone, in vertebrates divided into two plates, an inner and an outer (sometimes called the lateral and medial); the posterior nares pass through the space, called the pterygoid fossa, between the processes" [ISBN:0-683-40008-8, MP:0004452] +subset: pheno_slim +synonym: "processus pterygoideus" EXACT [FMA:54682] +synonym: "processus pterygoideus ossis sphenoidalis" EXACT LATIN [FMA:54682, FMA:TA] +synonym: "processus pterygoideus ossis sphenoidalis" RELATED LATIN [http://en.wikipedia.org/wiki/Pterygoid_processes_of_the_sphenoid] +synonym: "pterygoid plate" RELATED [http://en.wikipedia.org/wiki/Pterygoid_processes_of_the_sphenoid] +synonym: "pterygoid process" EXACT [FMA:54682] +synonym: "pterygoid process" RELATED [http://en.wikipedia.org/wiki/Pterygoid_processes_of_the_sphenoid] +synonym: "pterygoid process of sphenoid" EXACT [FMA:54682] +synonym: "pterygoid process of sphenoid bone" EXACT [FMA:54682] +synonym: "pterygoid process of sphenoid bone" RELATED [MA:0002774] +synonym: "pterygoid processes" RELATED [http://en.wikipedia.org/wiki/Pterygoid_processes_of_the_sphenoid] +synonym: "pterygoid processus" RELATED [http://en.wikipedia.org/wiki/Pterygoid_processes_of_the_sphenoid] +xref: AAO:0010086 +xref: FMA:54682 +xref: http://en.wikipedia.org/wiki/Pterygoid_processes_of_the_sphenoid +xref: http://www.snomedbrowser.com/Codes/Details/140390001 +xref: MA:0002774 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: contributes_to_morphology_of UBERON:0001677 ! sphenoid bone +relationship: in_lateral_side_of UBERON:0001677 {source="FMA-abduced-lr"} ! sphenoid bone +relationship: part_of UBERON:0001677 ! sphenoid bone + +[Term] +id: UBERON:0004650 +name: tongue keratinized epithelium +def: "A keratinized stratified squamous epithelium that is part of a tongue." [OBOL:automatic] +synonym: "keratinized epithelium of tongue" EXACT [FMA:74865] +xref: FMA:74865 +xref: MA:0002787 +is_a: UBERON:0006919 ! tongue squamous epithelium +is_a: UBERON:0012329 ! keratinized stratified squamous epithelium +intersection_of: UBERON:0012329 ! keratinized stratified squamous epithelium +intersection_of: part_of UBERON:0001723 ! tongue + +[Term] +id: UBERON:0004651 +name: scapula spine +def: "the triangular ridge on the dorsal aspect of the scapula which separates the supra- from the infraspinatous fossa and where the trapezius and deltoid muscles are attached" [ISBN:0-683-40008-8, MP:0004347] +subset: pheno_slim +synonym: "scapular spine" RELATED [FMA:13453, MA:0002806] +synonym: "spina scapulae" RELATED LATIN [http://en.wikipedia.org/wiki/Spine_of_scapula] +synonym: "spine of scapula" EXACT [FMA:13453] +xref: EMAPA:25123 +xref: FMA:13453 +xref: http://en.wikipedia.org/wiki/Spine_of_scapula +xref: http://www.snomedbrowser.com/Codes/Details/181916005 +xref: MA:0002806 +is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ +relationship: part_of UBERON:0006849 ! scapula + +[Term] +id: UBERON:0004652 +name: humerus diaphysis +def: "The body or shaft of the humerus is almost cylindrical in the upper half of its extent, prismatic and flattened below, and has three borders and three surfaces." [http://en.wikipedia.org/wiki/Body_of_humerus] +subset: pheno_slim +synonym: "body of humerus" EXACT [FMA:13305] +synonym: "body of the humerus" RELATED [http://en.wikipedia.org/wiki/Body_of_humerus] +synonym: "corpus humeri" EXACT LATIN [FMA:13305, FMA:TA] +synonym: "diaphysis of humerus" EXACT [FMA:13305] +synonym: "humeral diaphysis" EXACT [FMA:13305] +synonym: "medial humerus" RELATED [http://en.wikipedia.org/wiki/Body_of_humerus] +synonym: "shaft of humerus" EXACT [FMA:13305] +synonym: "shaft of the humerus" RELATED [http://en.wikipedia.org/wiki/Body_of_humerus] +xref: EMAPA:25051 +xref: FMA:13305 +xref: http://en.wikipedia.org/wiki/Body_of_humerus +xref: http://www.snomedbrowser.com/Codes/Details/181927007 +xref: MA:0002807 +xref: NCIT:C120671 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004769 ! diaphysis +intersection_of: UBERON:0004769 ! diaphysis +intersection_of: part_of UBERON:0000976 ! humerus +relationship: part_of UBERON:0000976 ! humerus + +[Term] +id: UBERON:0004654 +name: temporal process of zygomatic bone +def: "The temporal process of the zygomatic bone, directed backward and medialward, is concave, presenting medially a rough, triangular area, for articulation with the maxilla, and laterally a smooth, concave surface, the upper part of which forms the anterior boundary of the temporal fossa, the lower a part of the infratemporal fossa. Near the center of this surface is the zygomaticotemporal foramen for the transmission of the zygomaticotemporal nerve." [http://en.wikipedia.org/wiki/Temporal_process_of_the_zygomatic_bone] +synonym: "facies temporalis ossis zygomatici" EXACT LATIN [http://en.wikipedia.org/wiki/Temporal_process_of_the_zygomatic_bone] +synonym: "processus temporalis (os zygomaticum)" EXACT [FMA:52904] +synonym: "processus temporalis ossis zygomatici" EXACT LATIN [FMA:52904, FMA:TA] +synonym: "zygomatic bone temporal process" EXACT [MA:0002812] +xref: EMAPA:37807 {source="MA:th"} +xref: FMA:52904 +xref: http://en.wikipedia.org/wiki/Temporal_process_of_the_zygomatic_bone +xref: http://www.snomedbrowser.com/Codes/Details/122772003 +xref: MA:0002812 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001683 {source="MA"} ! jugal bone +relationship: part_of UBERON:0002500 {source="MA"} ! zygomatic arch + +[Term] +id: UBERON:0004655 +name: zygomatic process of temporal bone +alt_id: UBERON:0004653 +def: "The zygomatic process of the temporal bone is a long, arched process projecting from the lower part of the squamous portion of the temporal bone. It articulates with the zygomatic bone. This process is at first directed lateralward, its two surfaces looking upward and downward; it then appears as if twisted inward upon itself, and runs forward, its surfaces now looking medialward and lateralward." [http://en.wikipedia.org/wiki/Zygomatic_process_of_temporal_bone] +synonym: "processus zygomaticus" EXACT [FMA:52886] +synonym: "processus zygomaticus ossis temporalis" EXACT LATIN [http://en.wikipedia.org/wiki/Zygomatic_process_of_temporal_bone] +synonym: "temporal bone zygomatic process" EXACT [MA:0002811] +synonym: "temporal zygomatic process" EXACT [FMA:52886] +synonym: "zygomatic appendage of temporal bone" RELATED [FMA:52886] +xref: EMAPA:19015 +xref: FMA:52886 +xref: http://en.wikipedia.org/wiki/Zygomatic_process_of_temporal_bone +xref: http://www.snomedbrowser.com/Codes/Details/414110008 +xref: MA:0002811 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001678 {source="MA"} ! temporal bone +relationship: part_of UBERON:0002500 {source="MA"} ! zygomatic arch + +[Term] +id: UBERON:0004657 +name: mandible condylar process +def: "articular part of the mandible bone" [MFMO:0000056] +subset: pheno_slim +synonym: "condylar process of mandible" EXACT [FMA:52836] +synonym: "condyle of mandible" RELATED [http://en.wikipedia.org/wiki/Condyloid_process] +synonym: "condyle of the mandible" EXACT [MFMO:0000056] +synonym: "condyle of the mandible" RELATED [http://en.wikipedia.org/wiki/Condyloid_process] +synonym: "condyloid process" RELATED [http://en.wikipedia.org/wiki/Condyloid_process] +synonym: "mandibular condyle" EXACT [BTO:0001750] +synonym: "mandibular condyloid process" RELATED [MA:0002816] +synonym: "processus condylaris" EXACT [FMA:52836] +synonym: "processus condylaris mandibulae" EXACT LATIN [FMA:52836, FMA:TA] +xref: BTO:0001750 +xref: Condyloid:process +xref: EMAPA:36572 +xref: FMA:52836 +xref: GAID:219 +xref: MA:0002816 +xref: MESH:D008335 +xref: MFMO:0000056 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: contributes_to_morphology_of UBERON:0000401 ! mandibular ramus +relationship: part_of UBERON:0000401 ! mandibular ramus + +[Term] +id: UBERON:0004658 +name: mandible head +synonym: "head of mandible" EXACT [FMA:59331] +synonym: "mandibular head" EXACT [FMA:59331] +xref: FMA:59331 +xref: http://www.snomedbrowser.com/Codes/Details/51354009 +xref: MA:0002817 +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0004657 ! mandible condylar process + +[Term] +id: UBERON:0004659 +name: mandible neck +synonym: "mandibular neck" EXACT [FMA:59332] +synonym: "neck of mandible" EXACT [FMA:59332] +xref: FMA:59332 +xref: http://www.snomedbrowser.com/Codes/Details/368875004 +xref: MA:0002818 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0018664 ! neck of bone element +relationship: part_of UBERON:0004657 ! mandible condylar process + +[Term] +id: UBERON:0004660 +name: mandible coronoid process +def: "A dorsal process on the lower jaw associated with muscle attachment. It may be formed by a separate coronoid bone or as a process of the dentary. In most living (and many extinct) mammals, the most dorsal of the three proximal processes of the jaw." [http://en.wikipedia.org/wiki/Coronoid_process_of_the_mandible, http://palaeos.com/vertebrates/glossary/glossaryCh.html#Coronoid%20process] +subset: pheno_slim +synonym: "coronoid" BROAD [AAO:0000103] +synonym: "coronoid process of mandible" EXACT [FMA:52833] +synonym: "mandibular coronoid process" RELATED [MA:0002819] +synonym: "processus coronoideus (mandibula)" EXACT [FMA:52833] +synonym: "processus coronoideus mandibulae" RELATED LATIN [http://en.wikipedia.org/wiki/Coronoid_process_of_the_mandible] +xref: FMA:52833 +xref: http://en.wikipedia.org/wiki/Coronoid_process_of_the_mandible +xref: http://www.snomedbrowser.com/Codes/Details/244691004 +xref: MA:0002819 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: contributes_to_morphology_of UBERON:0000401 ! mandibular ramus +relationship: part_of UBERON:0000401 ! mandibular ramus + +[Term] +id: UBERON:0004661 +name: mandible temporal crest +synonym: "crista temporalis (mandibulae)" EXACT [FMA:59484] +synonym: "crista temporalis mandibulae" EXACT LATIN [FMA:59484, FMA:TA] +synonym: "mandibular temporal crest" RELATED [FMA:59484] +synonym: "temporal crest of mandible" EXACT [FMA:59484] +xref: FMA:59484 +xref: MA:0002820 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +disjoint_from: UBERON:0010994 ! coronoid process of ulna +relationship: part_of UBERON:0000401 ! mandibular ramus + +[Term] +id: UBERON:0004662 +name: vertebra lamina +def: "two broad plates directed dorsomedially from the pedicles; these fuse at the dorsal midline, and complete the dorsal wall of the vertebral foramen" [ISBN:0-683-40008-8, MGI:csmith, MP:0004605] +subset: pheno_slim +synonym: "lamina arcus vertebrae" EXACT LATIN [FMA:11951, FMA:TA] +synonym: "lamina of vertebra" EXACT [FMA:11951] +synonym: "lamina of vertebral arch" EXACT [FMA:11951] +synonym: "neural arch lamina" EXACT [AAO:0000695] +synonym: "vertebral lamina" EXACT [FMA:11951] +synonym: "vertebral lamina" RELATED [MA:0002876] +xref: AAO:0000695 +xref: FMA:11951 +xref: http://www.snomedbrowser.com/Codes/Details/277423002 +xref: MA:0002876 +is_a: UBERON:0000063 ! organ subunit +relationship: contributes_to_morphology_of UBERON:0003861 ! neural arch +relationship: part_of UBERON:0003861 ! neural arch + +[Term] +id: UBERON:0004663 +name: aorta wall +def: "An anatomical wall that is part of an aorta, enclosing the luminal space." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "aortic wall" EXACT [FMA:14156] +synonym: "wall of aorta" EXACT [FMA:14156] +xref: EMAPA:35139 +xref: FMA:14156 +xref: MA:0002901 +is_a: UBERON:0035965 ! wall of blood vessel +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0000947 ! aorta +relationship: contributes_to_morphology_of UBERON:0000947 ! aorta +relationship: part_of UBERON:0000947 ! aorta + +[Term] +id: UBERON:0004664 +name: aorta tunica adventitia +def: "the outermost layer of the aorta wall, containing connective tissue and collagen and elastic fibers" [ISBN:0-683-40008-8, MP:0009871] +subset: pheno_slim +synonym: "tunica adventitia of aorta" EXACT [FMA:14283] +xref: EMAPA:35136 +xref: FMA:14283 +xref: http://www.snomedbrowser.com/Codes/Details/24996002 +xref: MA:0002902 +is_a: UBERON:0005734 ! tunica adventitia of blood vessel +intersection_of: UBERON:0005734 ! tunica adventitia of blood vessel +intersection_of: part_of UBERON:0000947 ! aorta +relationship: contributes_to_morphology_of UBERON:0004663 ! aorta wall +relationship: part_of UBERON:0004663 ! aorta wall + +[Term] +id: UBERON:0004665 +name: muscular coat of seminal vesicle +def: "A muscular coat that is part of a seminal vesicle [Automatically generated definition]." [OBOL:automatic] +synonym: "muscle layer of seminal vesicle" EXACT [FMA:19404] +synonym: "muscular coat of seminal gland" EXACT [FMA:19404] +synonym: "muscular layer of seminal gland" EXACT [FMA:19404] +synonym: "tunica muscularis (vesicula seminalis)" EXACT [FMA:19404] +synonym: "tunica muscularis glandulae vesiculosae" EXACT LATIN [FMA:19404, FMA:TA] +xref: EMAPA:29773 +xref: FMA:19404 +xref: MA:0002913 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0006660 ! muscular coat +intersection_of: UBERON:0006660 ! muscular coat +intersection_of: part_of UBERON:0000998 ! seminal vesicle +relationship: part_of UBERON:0000998 ! seminal vesicle + +[Term] +id: UBERON:0004666 +name: interventricular septum membranous part +alt_id: UBERON:0004143 +def: "The membranous portion of the wall between the two lower chambers of the heart" [MP:0008823] +subset: pheno_slim +synonym: "cardiac ventricular membranous septum" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "membranous interventricular septum" EXACT [FMA:7135] +synonym: "membranous interventricular septum" RELATED [MA:0002939] +synonym: "membranous part interventricular septum" EXACT [VHOG:0000927] +synonym: "membranous part of interventricular septum" EXACT [FMA:7135] +synonym: "membranous portion of interventricular septum" EXACT [FMA:7135] +synonym: "membranous septum" BROAD [GO:0003149] +synonym: "pars membranacea (septi interventricularis)" EXACT [FMA:7135] +synonym: "pars membranacea septi interventricularis" EXACT LATIN [FMA:7135, FMA:TA] +synonym: "ventricle membranous septum" BROAD [VT:0000018] +synonym: "ventricular membranous septum" BROAD [MP:0008823] +xref: EHDAA2:0004596 +xref: EMAPA:18246 +xref: FMA:7135 +xref: http://www.snomedbrowser.com/Codes/Details/278228007 +xref: MA:0002939 +xref: VHOG:0000927 +is_a: UBERON:0000158 ! membranous layer +is_a: UBERON:0005983 ! heart layer +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0000158 ! membranous layer +intersection_of: part_of UBERON:0002094 ! interventricular septum +relationship: contributes_to_morphology_of UBERON:0002094 ! interventricular septum +relationship: develops_from UBERON:0000095 {source="Wikipedia"} ! cardiac neural crest +relationship: part_of UBERON:0002094 ! interventricular septum + +[Term] +id: UBERON:0004667 +name: interventricular septum muscular part +alt_id: UBERON:0004144 +def: "The muscular portion of the wall between the two lower chambers of the heart" [http://en.wikipedia.org/wiki/Interventricular_septum#Portions, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "cardiac ventricular muscular septum" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "muscular interventricular septum" EXACT [FMA:7134] +synonym: "muscular interventricular septum" RELATED [MA:0002940] +synonym: "muscular part interventricular septum" EXACT [] +synonym: "muscular part of interventricular septum" EXACT [FMA:7134] +synonym: "muscular septum" BROAD [GO:0003150] +synonym: "pars muscularis (septi interventricularis)" EXACT [FMA:7134] +synonym: "pars muscularis septi interventricularis" EXACT LATIN [FMA:7134, FMA:TA] +synonym: "septum membranaceum" EXACT LATIN [] +synonym: "ventricular muscular septum" EXACT [] +xref: EHDAA2:0000885 +xref: EHDAA:2607 +xref: EMAPA:18247 +xref: FMA:7134 +xref: MA:0002940 +xref: RETIRED_EHDAA2:0000888 +is_a: UBERON:0002385 ! muscle tissue +intersection_of: UBERON:0002385 ! muscle tissue +intersection_of: part_of UBERON:0002094 ! interventricular septum +relationship: contributes_to_morphology_of UBERON:0002094 ! interventricular septum +relationship: part_of UBERON:0002094 ! interventricular septum + +[Term] +id: UBERON:0004668 +name: fourth ventricle aperture +def: "One of: the 4th ventricle median or lateral apertures." [https://orcid.org/0000-0002-6601-2165] +synonym: "aperture of 4th ventricle" EXACT [] +synonym: "aperture of fourth ventricle" EXACT [FMA:242766] +xref: FMA:242766 +xref: MA:0002945 +is_a: UBERON:0000161 ! orifice +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000161 ! orifice +intersection_of: part_of UBERON:0002422 ! fourth ventricle +relationship: part_of UBERON:0002422 ! fourth ventricle + +[Term] +id: UBERON:0004670 +name: ependyma +def: "The thin epithelium-like membrane composed of ependymal cells that lines the ventricular system of the brain and the spinal cord." [http://en.wikipedia.org/wiki/Ependyma, http://orcid.org/0000-0002-6601-2165, ISBN:0387949542] +subset: pheno_slim +synonym: "ependyma of neuraxis" EXACT [FMA:242791] +synonym: "ependymal epithelium" EXACT [BTO:0000401] +synonym: "lamina epithelialis" RELATED [FMA:242791] +xref: BTO:0000401 +xref: EMAPA:37865 {source="MA:th"} +xref: FMA:242791 +xref: GAID:608 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1856 +xref: http://en.wikipedia.org/wiki/Ependyma +xref: http://linkedlifedata.com/resource/umls/id/C0014472 +xref: http://www.snomedbrowser.com/Codes/Details/12766003 +xref: MESH:D004805 +xref: NCIT:C13078 +xref: UMLS:C0014472 {source="ncithesaurus:Ependyma"} +is_a: UBERON:0007601 ! ciliated epithelium +is_a: UBERON:0010371 ! ecto-epithelium +relationship: contributes_to_morphology_of UBERON:0001016 ! nervous system +relationship: develops_from UBERON:0004060 ! neural tube ventricular layer +relationship: part_of UBERON:0005358 ! ventricle of nervous system + +[Term] +id: UBERON:0004671 +name: gyrus rectus +def: "The portion of the frontal lobe medial to the medial orbital gyrus is named the gyrus rectus (or straight gyrus), and is continuous with the superior frontal gyrus on the medial surface. A specific function for the gyrus rectus has not yet been elucidated." [http://en.wikipedia.org/wiki/Straight_gyrus] +synonym: "gyrus rectus" EXACT [BIRNLEX:1103] +synonym: "medial part of gyri orbitales" EXACT [FMA:61893] +synonym: "rectal gyrus" EXACT [FMA:61893] +synonym: "rectus gyrus" EXACT [FMA:61893] +synonym: "straight gyrus" EXACT [FMA:61893] +synonym: "ventromedial gyrus" RELATED [NeuroNames:94] +xref: BAMS:GRe +xref: BIRNLEX:1103 +xref: FMA:61893 +xref: HBA:4047 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=94 {source="BIRNLEX:1103"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=94 +xref: http://linkedlifedata.com/resource/umls/id/C0152300 +xref: http://www.snomedbrowser.com/Codes/Details/279206004 +xref: Straight:gyrus +xref: UMLS:C0152300 {source="BIRNLEX:1103"} +is_a: UBERON:0000200 {source="FMA"} ! gyrus +relationship: part_of UBERON:0016525 {source="FMA"} ! frontal lobe + +[Term] +id: UBERON:0004672 +name: posterior horn lateral ventricle +def: "Part of the lateral ventricle that extends posteriorly into the occipital lobe." [BIRNLEX:1297] +synonym: "cornu occipitale (ventriculi lateralis)" EXACT LATIN [FMA:83700, FMA:TA] +synonym: "cornu occipitale ventriculi lateralis" EXACT LATIN [FMA:83700, FMA:TA] +synonym: "cornu posterius (ventriculi lateralis)" EXACT LATIN [FMA:83700, FMA:TA] +synonym: "cornu posterius ventriculi lateralis" EXACT LATIN [FMA:83700, FMA:TA] +synonym: "occipital horn" EXACT [BIRNLEX:1297] +synonym: "occipital horn of lateral ventricle" EXACT [FMA:83700] +synonym: "posterior horn lateral ventricle" EXACT [BIRNLEX:1297] +synonym: "posterior horn of lateral ventricle" EXACT [FMA:83700] +synonym: "posterior horn of the lateral ventricle" EXACT [BIRNLEX:1297] +synonym: "ventriculus lateralis, cornu occipitale" EXACT LATIN [FMA:83700, FMA:TA] +synonym: "ventriculus lateralis, cornu posterius" EXACT LATIN [FMA:83700, FMA:TA] +xref: BAMS:OLV +xref: BIRNLEX:1297 +xref: DHBA:10599 +xref: EMAPA:17772 +xref: FMA:83700 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=223 +xref: http://en.wikipedia.org/wiki/Posterior_horn_of_lateral_ventricle +xref: http://linkedlifedata.com/resource/umls/id/C0152282 +xref: http://www.snomedbrowser.com/Codes/Details/362314009 +xref: NCIT:C33195 +xref: UMLS:C0152282 {source="BIRNLEX:1297"} +xref: UMLS:C0152282 {source="ncithesaurus:Occipital_Horn_of_the_Lateral_Ventricle"} +is_a: UBERON:0002285 ! telencephalic ventricle + +[Term] +id: UBERON:0004673 +name: trigeminal nerve root +def: "A nerve root that extends_fibers_into a trigeminal nerve." [OBOL:automatic] +synonym: "descending trigeminal root" RELATED [TAO:0000192] +synonym: "radix descendens nervi trigemini" EXACT LATIN [ZFA:0000192] +synonym: "root of trigeminal nerve" EXACT [FMA:52610] +synonym: "root of trigeminal V nerve" EXACT [Obol:cjm] +synonym: "trigeminal nerve root" EXACT [BIRNLEX:1346] +synonym: "trigeminal neural root" EXACT [FMA:52610] +xref: BIRNLEX:1346 +xref: DHBA:12865 +xref: DMBA:17739 +xref: FMA:52610 +xref: http://www.snomedbrowser.com/Codes/Details/280185007 +xref: TAO:0000192 +xref: ZFA:0000192 +is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve +intersection_of: UBERON:0002211 ! nerve root +intersection_of: extends_fibers_into UBERON:0001645 ! trigeminal nerve +relationship: extends_fibers_into UBERON:0001645 ! trigeminal nerve +relationship: part_of UBERON:0001895 ! metencephalon + +[Term] +id: UBERON:0004674 +name: facial nerve root +def: "A nerve root that extends_fibers_into a facial nerve." [OBOL:automatic] +synonym: "central part of facial nerve" EXACT [FMA:53418] +synonym: "facial nerve fibers" EXACT [FMA:53418] +synonym: "facial nerve or its root" RELATED [BAMS:7n] +synonym: "facial nerve root" EXACT [BIRNLEX:1513] +synonym: "facial nerve/root" RELATED [BAMS:7n] +synonym: "facial neural root" EXACT [FMA:53418] +synonym: "fibrae nervi facialis" EXACT LATIN [FMA:53418, FMA:TA] +synonym: "root of facial nerve" EXACT [FMA:53418] +xref: BAMS:7n +xref: BAMS:7nf +xref: BIRNLEX:1513 +xref: DHBA:12862 +xref: DMBA:17742 +xref: FMA:53418 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=579 +xref: http://www.snomedbrowser.com/Codes/Details/280186008 +is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve +intersection_of: UBERON:0002211 ! nerve root +intersection_of: extends_fibers_into UBERON:0001647 ! facial nerve +relationship: extends_fibers_into UBERON:0001647 ! facial nerve +relationship: part_of UBERON:0001895 ! metencephalon + +[Term] +id: UBERON:0004675 +name: hypoglossal nerve root +alt_id: UBERON:0022760 +def: "A nerve root that extends_fibers_into a hypoglossal nerve." [OBOL:automatic] +synonym: "central part of hypoglossal nerve" EXACT [FMA:72632] +synonym: "central part of hypoglossal nerve" RELATED [BIRNLEX:1288] +synonym: "fibrae nervi hypoglossi" EXACT LATIN [FMA:72632, FMA:TA] +synonym: "hypoglossal nerve fiber bundle" EXACT HUMAN_PREFERRED [BIRNLEX:1288] +synonym: "hypoglossal nerve fiber bundle" EXACT [BIRNLEX:1288] +synonym: "hypoglossal nerve fibers" EXACT [FMA:72632] +synonym: "hypoglossal nerve fibers" RELATED [BIRNLEX:1288] +synonym: "hypoglossal nerve root" EXACT [BIRNLEX:1588] +synonym: "hypoglossal nerve tract" EXACT [FMA:72632] +synonym: "hypoglossal nerve/ root" RELATED [BAMS:12n] +synonym: "root of hypoglossal nerve" EXACT [FMA:72632] +synonym: "root of hypoglossal nerve" RELATED [BIRNLEX:1288] +xref: BAMS:12n +xref: BAMS:12nf +xref: BIRNLEX:1288 +xref: BIRNLEX:1588 +xref: DHBA:12886 +xref: DMBA:17750 +xref: FMA:72632 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=798 +xref: http://linkedlifedata.com/resource/umls/id/C0175555 +is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve +intersection_of: UBERON:0002211 ! nerve root +intersection_of: extends_fibers_into UBERON:0001650 ! hypoglossal nerve +relationship: extends_fibers_into UBERON:0001650 ! hypoglossal nerve +relationship: part_of UBERON:0001896 ! medulla oblongata + +[Term] +id: UBERON:0004676 +name: spinal cord lateral horn +def: "A triangular field that is a lateralward projection of the postero-lateral part of the anterior column[WP, modified by cjm]." [http://en.wikipedia.org/wiki/Lateral_horn_of_spinal_cord] +synonym: "columna grisea intermedia medullare spinalis" EXACT LATIN [FMA:256536, FMA:TA] +synonym: "cornu laterale medullae spinalis" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_horn_of_spinal_cord] +synonym: "intermediate gray column of spinal cord" EXACT [FMA:256536] +synonym: "intermediate grey column of spinal cord" RELATED [FMA:256536] +synonym: "lateral gray column of spinal cord" EXACT [FMA:256536] +synonym: "lateral gray horn" EXACT [BIRNLEX:2666] +synonym: "lateral gray matter of spinal cord" EXACT [FMA:256536] +synonym: "lateral horn of spinal cord" EXACT [FMA:256536] +synonym: "spinal cord intermediate horn" EXACT [BIRNLEX:2666] +synonym: "spinal cord lateral horn" EXACT [BIRNLEX:2666] +xref: BIRNLEX:2666 +xref: FMA:256536 +xref: http://en.wikipedia.org/wiki/Lateral_horn_of_spinal_cord +xref: http://linkedlifedata.com/resource/umls/id/C0228567 +xref: http://linkedlifedata.com/resource/umls/id/C0228582 +xref: MA:0001118 +xref: NCIT:C32938 +xref: UMLS:C0228567 {source="BIRNLEX:2666"} +xref: UMLS:C0228582 {source="ncithesaurus:Lateral_Horn_of_the_Spinal_Cord"} +is_a: UBERON:0016550 ! spinal cord column +relationship: in_lateral_side_of UBERON:0002315 {source="FMA-abduced-lr"} ! gray matter of spinal cord +relationship: part_of UBERON:0002315 {source="FMA"} ! gray matter of spinal cord + +[Term] +id: UBERON:0004677 +name: spinal cord gray commissure +def: "the band of grey substance spanning the midline of the spinal cord that surrounds the central canal" [ISBN:0-683-40008-8, MP:0009696] +subset: pheno_slim +synonym: "area spinalis X" EXACT LATIN [FMA:68871, FMA:TA] +synonym: "central gelatinous substance" RELATED [NeuroNames:1649] +synonym: "central glial substance" RELATED [NeuroNames:1649] +synonym: "commissura grisea anaterior medullae spinalis" RELATED LATIN [http://en.wikipedia.org/wiki/Gray_commissure] +synonym: "commissura grisea posterior medulla spinalis" RELATED LATIN [http://en.wikipedia.org/wiki/Gray_commissure] +synonym: "gray commissure of spinal cord" EXACT [FMA:77036] +synonym: "grey commissure" RELATED [FMA:77036] +synonym: "grey commissure of spinal cord" RELATED [FMA:77036] +synonym: "lamina 10" RELATED LATIN [NeuroNames:1702] +synonym: "lamina spinalis X" RELATED LATIN [NeuroNames:1649] +synonym: "lamina spinalis X" RELATED LATIN [NeuroNames:1702] +synonym: "lamina X" EXACT [] +synonym: "lamina X" RELATED [NeuroNames:1702] +synonym: "lamina X" RELATED [NeuroNames:1649] +synonym: "lamina X of gray matter of spinal cord" EXACT [FMA:68871] +synonym: "rexed lamina X" EXACT [FMA:68871] +synonym: "Rexed's lamina X" RELATED [NeuroNames:1702] +synonym: "Rexed's lamina X" RELATED [NeuroNames:1649] +synonym: "spinal area X" EXACT [FMA:68871] +synonym: "spinal cord gray commissure" EXACT [BIRNLEX:2669] +synonym: "spinal cord grey commissure" EXACT [OBOL:automatic] +synonym: "spinal lamina X" EXACT [FMA:68871] +synonym: "substantia gelatinosa centralis" RELATED LATIN [NeuroNames:1702] +synonym: "substantia gelatinosa spinalis" RELATED LATIN [NeuroNames:1649] +synonym: "substantia gelationsa centralis" RELATED LATIN [NeuroNames:1649] +synonym: "substantia gliosa (spinalis)" RELATED LATIN [NeuroNames:1649] +xref: BIRNLEX:2669 +xref: DHBA:12647 +xref: EMAPA:37747 {source="MA:th"} +xref: FMA:68871 +xref: FMA:77036 +xref: Gray:commissure +xref: HBA:9525 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1649 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1702 +xref: http://linkedlifedata.com/resource/umls/id/C1512274 +xref: http://www.snomedbrowser.com/Codes/Details/362427009 +xref: UMLS:C1512274 {source="BIRNLEX:2669"} +is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord +relationship: surrounds UBERON:0002291 ! central canal of spinal cord + +[Term] +id: UBERON:0004678 +name: apex of spinal cord dorsal horn +synonym: "apex columnae posterioris" EXACT LATIN [FMA:256700, FMA:TA] +synonym: "apex cornu posterioris medullae spinalis" EXACT LATIN [FMA:256700, FMA:TA] +synonym: "apex of dorsal gray column" EXACT [FMA:256700] +synonym: "apex of dorsal gray column of spinal cord" EXACT [FMA:256700] +synonym: "apex of dorsal horn of spinal cord" EXACT [FMA:256700] +synonym: "apex of posterior gray column" RELATED [FMA:256700] +synonym: "apex of posterior horn of spinal cord" EXACT [FMA:256700] +synonym: "apex of spinal cord dorsal horn" EXACT [BIRNLEX:2670] +synonym: "apex of spinal cord posterior horn" EXACT [BIRNLEX:2670] +xref: BIRNLEX:2670 +xref: FMA:256700 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2138 +is_a: UBERON:0002315 ! gray matter of spinal cord + +[Term] +id: UBERON:0004679 +name: dentate gyrus molecular layer +def: "The molecular layer of the dentate gyrus that is bounded by the pial surface superficially and the dentate gyrus granule cell layer deep. It is divided into 2 or more sublayers." [BIRNLEX:4127] +synonym: "dentate gyrus molecular layer" EXACT [BIRNLEX:4127] +synonym: "molecular layer of dentate gyrus" EXACT [FMA:83677] +synonym: "molecular layer of the dentate gyrus" RELATED [BAMS:Mol] +synonym: "stratum moleculare gyri dentati" EXACT LATIN [FMA:83677, FMA:TA] +xref: BAMS:mo +xref: BAMS:Mol +xref: BIRNLEX:4127 +xref: EMAPA:35279 +xref: FMA:83677 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2121 +xref: MA:0003122 +xref: MBA:10703 +is_a: UBERON:0002304 ! layer of dentate gyrus +intersection_of: UBERON:0002304 ! layer of dentate gyrus +intersection_of: bounding_layer_of UBERON:0001885 ! dentate gyrus of hippocampal formation +relationship: bounding_layer_of UBERON:0001885 ! dentate gyrus of hippocampal formation +relationship: has_part UBERON:0006134 ! nerve fiber +relationship: immediately_deep_to UBERON:0002361 ! pia mater + +[Term] +id: UBERON:0004680 +name: body of fornix +def: "Part of fornix adjacent to the crura where they join together at the midline underneath the corpus callosum" [BIRNLEX:739] +synonym: "body of fornix" EXACT [BIRNLEX:739] +synonym: "body of fornix of forebrain" EXACT [FMA:61968] +synonym: "column of fornix" EXACT [FMA:61968] +synonym: "columna fornicis" EXACT LATIN [FMA:61968, FMA:TA] +synonym: "columna fornicis" RELATED LATIN [http://en.wikipedia.org/wiki/Columns_of_fornix] +synonym: "columns of fornix" EXACT [http://en.wikipedia.org/wiki/Columns_of_fornix] +synonym: "columns of the fornix" RELATED [BAMS:fx] +synonym: "fornix body" EXACT [FMA:61968] +xref: BAMS:bfx +xref: BAMS:fx +xref: BIRNLEX:739 +xref: DHBA:10577 +xref: DHBA:10578 +xref: FMA:61968 +xref: HBA:9252 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=271 +xref: http://en.wikipedia.org/wiki/Columns_of_fornix +xref: http://linkedlifedata.com/resource/umls/id/C0228289 +xref: http://www.snomedbrowser.com/Codes/Details/369117006 +xref: MBA:436 +xref: UMLS:C0228289 {source="BIRNLEX:739"} +is_a: UBERON:0011215 ! central nervous system cell part cluster +disjoint_from: UBERON:0014539 {source="NIFSTD"} ! precommissural fornix of forebrain +relationship: part_of UBERON:0000052 {source="FMA", source="NIF"} ! fornix of brain + +[Term] +id: UBERON:0004681 +name: vestibular system +def: "The sensory system for the sense of balance." [NLXANAT:090819] +subset: pheno_slim +synonym: "equilibrioception system" NARROW [] +synonym: "vestibular organ system" EXACT [FMA:7193] +synonym: "vestibular system" EXACT [NLXANAT:090819] +synonym: "vestibulomotor system" NARROW [] +xref: BTO:0003381 +xref: EMAPA:37986 {source="MA:th"} +xref: FMA:7193 +xref: http://www.snomedbrowser.com/Codes/Details/361533001 +xref: NLXANAT:090819 +xref: Vestibular:system +is_a: UBERON:0001032 ! sensory system +relationship: part_of UBERON:0002105 ! vestibulo-auditory system + +[Term] +id: UBERON:0004682 +name: corona radiata of neuraxis +def: "Fan shaped white matter mass comprised of afferent and efferent fibers from the cerebral cortex arranged in radially arrayed bundles, converging towards the internal capsule (Carpenter, Core Text of Neuroanatomy, 3rd ed, 1985, pg. 30; Heimer, The Human Brain and Spinal Cord, 2nd ed., 1995, pg 84)." [NLXANAT:090903] +synonym: "corona radiata" EXACT [NLXANAT:090903] +xref: Corona:radiata +xref: DHBA:12030 +xref: FMA:18661 +xref: HBA:265505046 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1446 +xref: NLXANAT:090903 +is_a: UBERON:0002437 {source="FMA"} ! cerebral hemisphere white matter + +[Term] +id: UBERON:0004683 +name: parasubiculum +def: "A transitional zone between the presubiculum and the entorhinal area in the mouse (Paxinos-2001), the rat (Swanson-1998) and the primate (Zilles-1990). Defined on the basis of cytoarchitecture, it is more similar to the presubiculum than to the entorhinal area (Zilles-1990). (from Brain Info)" [NLXANAT:091002] +synonym: "parasubicular area" EXACT [NLXANAT:091002] +synonym: "parasubicular cortex" RELATED [DHBA:10316] +synonym: "parasubicular cortex (parasubiculum)" EXACT [DHBA:10316] +synonym: "parasubiculum" EXACT [NLXANAT:091002] +xref: BAMS:PAR +xref: BAMS:PAS +xref: BAMS:PaS +xref: BM:Tel-Cx-PASB +xref: DHBA:10316 +xref: DMBA:16186 +xref: FMA:77604 +xref: HBA:4253 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2304 +xref: MBA:843 +xref: NLXANAT:091002 +xref: OldNeuroNames:2304 {source="NLXANAT:091002"} +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation + +[Term] +id: UBERON:0004684 +name: raphe nuclei +def: "The raphe nuclei are thin plates of cells in and immediately adjacent to the sagittal plane." [https://sourceforge.net/tracker/?func=detail&aid=3248146&group_id=36855&atid=440764, NLXANAT:20090205] +comment: we treat NR obscurus, NR magnus etc as parts of the raphe nuclei. This is consistent with treatment in FMA, where the class is 'set of raphe nuclei' +subset: vertebrate_core +synonym: "nuclei raphes" EXACT LATIN [FMA:84017, FMA:TA] +synonym: "nuclei raphes" RELATED LATIN [http://en.wikipedia.org/wiki/Raphe_nuclei] +synonym: "raphe cluster" RELATED [http://en.wikipedia.org/wiki/Raphe_nuclei] +synonym: "raphe nuclei" EXACT [FMA:84017] +synonym: "raphe nuclei" EXACT [NLXANAT:20090205] +synonym: "raphe nuclei set" EXACT [FMA:84017] +synonym: "raphe nucleus" RELATED [ZFA:0001429] +synonym: "raphe of mesenchephalon" RELATED [BAMS:RA] +synonym: "set of raphe nuclei" RELATED [FMA:84017] +xref: BAMS:RA +xref: EMAPA:35721 +xref: FMA:84017 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2495 +xref: http://linkedlifedata.com/resource/umls/id/C0034671 +xref: MA:0003147 +xref: MESH:A08.186.211.132.659.632 +xref: NCIT:C97335 +xref: NLXANAT:20090205 +xref: Raphe:nuclei +xref: TAO:0001429 +xref: UMLS:C0034671 {source="ncithesaurus:Raphe_Nuclei"} +xref: ZFA:0001429 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0002275 {source="GO", source="Wikipedia"} ! reticular formation + +[Term] +id: UBERON:0004685 +name: obsolete middle temporal area +def: "The term \"middle temporal visual area\" was first used by Allman and Kaas (1971) for a region of the owl monkey brain located on the \"caudal third of the middle temporal gyrus.\" Functionally, it contains \"a complete representation of the contralateral half of the visual field... This representation of the visual field (MT) corresponds to a histologically distinct area adjacent and rostral to area 19... The horizontal meridian divides MT into a lateral portion representing the upper visual quadrant and a medial portion representing the lower quadrant. The center of gaze is represented in the caudal portion of MT bordering area 19.\"" [NLXANAT:20090308] +synonym: "middle temporal area" EXACT [NLXANAT:20090308] +synonym: "middle temporal area" EXACT [FMA:68618] +is_obsolete: true +replaced_by: UBERON:0013552 +consider: NLXANAT:20090308 + +[Term] +id: UBERON:0004686 +name: gastro-splenic ligament +def: "peritoneum connecting the greater curvature of stomach with the hilum of the spleen[umich]. part of the greater omentum; derived from the dorsal mesogastrium in the embryo." [http://anatomy.med.umich.edu/gastrointestinal_system/stomach_tables.html, http://en.wikipedia.org/wiki/Gastrosplenic_ligament] +synonym: "gastrolienal ligament" EXACT [FMA:16517] +synonym: "gastrosplenc ligament" EXACT [FMA:16517] +synonym: "gastrosplenic ligament" EXACT [FMA:16517] +synonym: "ligamentum gastrosplenicum" EXACT [http://en.wikipedia.org/wiki/Gastrosplenic_ligament] +xref: EHDAA2:0000702 +xref: EHDAA:9160 +xref: EMAPA:18285 +xref: FMA:16517 +xref: Gastrosplenic:ligament +xref: http://www.snomedbrowser.com/Codes/Details/260636005 +xref: MA:0001619 +xref: NCIT:C32671 +xref: VHOG:0000354 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005172 ! abdomen element +is_a: UBERON:0008845 {source="MA-propagated"} ! nonskeletal ligament +relationship: attaches_to UBERON:0001248 ! hilum of spleen +relationship: connects UBERON:0000945 ! stomach +relationship: connects UBERON:0002106 ! spleen +relationship: develops_from UBERON:0005602 {source="MA-modified", source="Wikipedia"} ! dorsal mesogastrium +relationship: part_of UBERON:0005448 {source="FMA", source="Wikipedia"} ! greater omentum + +[Term] +id: UBERON:0004687 +name: lieno-renal ligament +def: "peritoneum that attaches the spleen to the posterior abdominal wall over the left kidney. develops from the dorsal mesogastrium of the embryo[umich]" [http://anatomy.med.umich.edu/gastrointestinal_system/peritoneum_tables.html, http://en.wikipedia.org/wiki/Splenorenal_ligament] +comment: Multiple sources support greater omentum assignment. E.g. http://medical-dictionary.thefreedictionary.com/splenorenal+ligament. We change the MA part_of assignment to develops_from +synonym: "lienorenal ligament" EXACT [FMA:16522] +synonym: "ligamentum lienorenale" EXACT LATIN [FMA:16522, FMA:TA] +synonym: "ligamentum splenorenale" EXACT LATIN [FMA:16522, FMA:TA] +synonym: "ligamentum splenorenale (lienorenale, phrenicosplenicum)" EXACT [FMA:16522] +synonym: "phrenico-splenic ligament" RELATED [FMA:16522] +synonym: "phrenicolienal ligament" EXACT [FMA:16522] +synonym: "splenicorenal ligament" EXACT [FMA:16522] +synonym: "splenorenal ligament" EXACT [FMA:16522] +xref: EHDAA2:0004572 +xref: EMAPA:18286 +xref: FMA:16522 +xref: MA:0001620 +xref: Splenorenal:ligament +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005172 ! abdomen element +is_a: UBERON:0008845 {source="MA-propagated"} ! nonskeletal ligament +relationship: attaches_to UBERON:0002106 ! spleen +relationship: attaches_to UBERON:0002113 ! kidney +relationship: develops_from UBERON:0005602 {source="MA-modified"} ! dorsal mesogastrium +relationship: part_of UBERON:0005448 {source="FMA"} ! greater omentum + +[Term] +id: UBERON:0004688 +name: costo-cervical trunk +def: "The costocervical trunk arises from the upper and back part of the subclavian artery, behind the scalenus anterior on the right side, and medial to that muscle on the left side. Passing backward, it splits into the deep cervical artery and the supreme intercostal artery (or the Highest intercostal artery), which descends behind the pleura in front of the necks of the first and second ribs, and anastomoses with the first aortic intercostal (3rd posterior intercostal artery). As it crosses the neck of the first rib it lies medial to the anterior division of the first thoracic nerve, and lateral to the first thoracic ganglion of the sympathetic trunk. In the first intercostal space, it gives off a branch which is distributed in a manner similar to the distribution of the aortic intercostals. The branch for the second intercostal space usually joins with one from the highest aortic intercostal artery. This branch is not constant, but is more commonly found on the right side; when absent, its place is supplied by an intercostal branch from the aorta. Each intercostal gives off a posterior branch which goes to the posterior vertebral muscles, and sends a small spinal branch through the corresponding intervertebral foramen to the medulla spinalis and its membranes. [WP,unvetted]." [http://en.wikipedia.org/wiki/Costocervical_trunk] +synonym: "costocervical trunk" EXACT [FMA:10636] +synonym: "truncus costocervicalis" RELATED LATIN [http://en.wikipedia.org/wiki/Costocervical_trunk] +synonym: "trunk of costocervical artery" EXACT [FMA:10636] +xref: Costocervical:trunk +xref: EMAPA:37496 {source="MA:th"} +xref: FMA:10636 +xref: http://www.snomedbrowser.com/Codes/Details/244225009 +xref: MA:0001939 +is_a: UBERON:0001637 ! artery + +[Term] +id: UBERON:0004689 +name: naso-frontal vein +def: "The nasofrontal vein is a vein in the eye which drains to the superior ophthalmic vein." [http://en.wikipedia.org/wiki/Nasofrontal_vein] +synonym: "nasofrontal vein" EXACT [FMA:51729] +xref: EMAPA:37227 {source="MA:th"} +xref: FMA:51729 +xref: http://www.snomedbrowser.com/Codes/Details/44840002 +xref: MA:0002182 +xref: Nasofrontal:vein +is_a: UBERON:0001638 ! vein +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0003712 ! cavernous sinus +relationship: tributary_of UBERON:0003712 {source="FMA/obol"} ! cavernous sinus + +[Term] +id: UBERON:0004690 +name: pancreaticoduodenal vein +def: "A vein running parallel to the superior and inferior pancreatico-duodenal arteries that drains blood from the pancreas and duodenum into the superior mesenteric or portal veins." [ncithesaurus:Pancreatico-Duodenal_Vein] +synonym: "pancreatico-duodenal vein" EXACT [MA:0002190] +synonym: "pancreaticoduodenal vein" EXACT [FMA:15398] +synonym: "Superior posterior pancreaticoduodenal vein" EXACT [FMA:15398] +synonym: "vena pancreaticoduodenalis" EXACT [] +synonym: "vena pancreaticoduodenalis superior posterior" EXACT LATIN [FMA:15398, FMA:TA] +xref: EMAPA:37177 {source="MA:th"} +xref: FMA:15398 +xref: http://linkedlifedata.com/resource/umls/id/C0226751 +xref: http://www.snomedbrowser.com/Codes/Details/76262002 +xref: MA:0002190 +xref: NCIT:C53060 +xref: Pancreaticoduodenal:veins +xref: UMLS:C0226751 {source="ncithesaurus:Pancreatico-Duodenal_Vein"} +is_a: UBERON:0001214 ! pancreatic tributary of splenic vein +relationship: part_of UBERON:0001138 ! superior mesenteric vein +relationship: tributary_of UBERON:0001138 {source="FMA/obol"} ! superior mesenteric vein + +[Term] +id: UBERON:0004691 +name: bulbourethral gland secretion +def: "A bodily secretion that is produced by a bulbourethral gland." [http://orcid.org/0000-0002-6601-2165] +synonym: "bulbo-urethral gland secretion" EXACT [FMA:62968] +synonym: "pre-ejaculate" EXACT [http://en.wikipedia.org/wiki/Pre-ejaculate] +synonym: "secretion of bulbo-urethral gland" EXACT [FMA:62968] +xref: EMAPA:36544 +xref: FMA:62968 +xref: Function +xref: http://linkedlifedata.com/resource/umls/id/C1707061 +xref: MA:0002524 +xref: NCIT:C52554 +xref: UMLS:C1707061 {source="ncithesaurus:Bulbourethral_Gland_Secretion"} +is_a: UBERON:0006314 ! bodily fluid +is_a: UBERON:0006530 {source="FMA"} ! seminal fluid +intersection_of: UBERON:0000456 ! secretion of exocrine gland +intersection_of: produced_by UBERON:0002366 ! bulbo-urethral gland +relationship: produced_by UBERON:0002366 ! bulbo-urethral gland + +[Term] +id: UBERON:0004692 +name: external naris epithelium +def: "An epithelium that is part of an external naris [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:18596 +xref: MA:0001321 +is_a: UBERON:0019306 ! nose epithelium +is_a: UBERON:0035036 ! naris epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0005928 ! external naris +relationship: part_of UBERON:0005928 ! external naris + +[Term] +id: UBERON:0004693 +name: Peyer's patch epithelium +def: "the specialized epithelium of the Peyer's patch" [ISBN:0-8153-1691-7, MGI:cwg, MP:0002388] +subset: pheno_slim +synonym: "peyer's patch epithelium" EXACT [MA:0000731] +xref: EMAPA:36506 +xref: MA:0000731 +is_a: UBERON:0001277 ! intestinal epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001211 ! Peyer's patch +relationship: contributes_to_morphology_of UBERON:0001211 ! Peyer's patch +relationship: part_of UBERON:0001211 ! Peyer's patch + +[Term] +id: UBERON:0004694 +name: Harderian gland epithelium +def: "An epithelium that is part of a Harderian gland [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelium of harderian gland" EXACT [] +synonym: "harderian gland epithelium" EXACT [MA:0001248] +xref: MA:0001248 +is_a: UBERON:0015808 ! eye epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0004187 ! Harderian gland +relationship: part_of UBERON:0004187 ! Harderian gland + +[Term] +id: UBERON:0004695 +name: arterial system smooth muscle +def: "A portion of smooth muscle tissue that is part of an arterial system [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:36503 +xref: MA:0000704 +is_a: UBERON:0001135 ! smooth muscle tissue +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0004572 ! arterial system +relationship: part_of UBERON:0004572 ! arterial system + +[Term] +id: UBERON:0004696 +name: venous system smooth muscle +def: "A portion of smooth muscle tissue that is part of a venous system [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:36613 +xref: MA:0000715 +is_a: UBERON:0004237 ! blood vessel smooth muscle +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0004582 ! venous system +relationship: part_of UBERON:0004582 ! venous system + +[Term] +id: UBERON:0004697 +name: Peyer's patch germinal center +def: "Area of the Peyer's patch where B cells proliferate and differentiate into plasma cells" [MP:0002391] +subset: pheno_slim +xref: EMAPA:35684 +xref: http://linkedlifedata.com/resource/umls/id/C1711398 +xref: MA:0000734 +xref: NCIT:C49600 +xref: UMLS:C1711398 {source="ncithesaurus:Peyer_s_Patch_Germinal_Center"} +is_a: UBERON:0010754 ! germinal center +intersection_of: UBERON:0010754 ! germinal center +intersection_of: part_of UBERON:0001211 ! Peyer's patch +relationship: part_of UBERON:0001211 ! Peyer's patch + +[Term] +id: UBERON:0004698 +name: vena cava endothelium +def: "An endothelium that is part of a vena cava [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:37800 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1710623 +xref: MA:0000713 +xref: NCIT:C49318 +xref: UMLS:C1710623 {source="ncithesaurus:Vena_Cava_Endothelium"} +is_a: UBERON:0001919 ! endothelium of vein +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0004087 ! vena cava +relationship: part_of UBERON:0004087 ! vena cava + +[Term] +id: UBERON:0004699 +name: outflow tract endothelium +def: "An endothelium that is part of a outflow tract [Automatically generated definition]." [OBOL:automatic] +xref: MA:0000490 +xref: VHOG:0001524 +is_a: UBERON:0008307 ! heart endothelium +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0004145 ! outflow tract +relationship: part_of UBERON:0004145 ! outflow tract + +[Term] +id: UBERON:0004700 +name: arterial system endothelium +def: "An endothelium that is part of an arterial system [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:35145 +xref: http://linkedlifedata.com/resource/umls/id/C1706849 +xref: MA:0000703 +xref: NCIT:C49329 +xref: UMLS:C1706849 {source="ncithesaurus:Arterial_System_Endothelium"} +is_a: UBERON:0004852 ! cardiovascular system endothelium +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0004572 ! arterial system +relationship: part_of UBERON:0004572 ! arterial system + +[Term] +id: UBERON:0004701 +name: venous system endothelium +def: "An endothelium that is part of a venous system [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:35907 +xref: http://linkedlifedata.com/resource/umls/id/C1710626 +xref: MA:0000714 +xref: NCIT:C49320 +xref: UMLS:C1710626 {source="ncithesaurus:Venous_System_Endothelium"} +is_a: UBERON:0004852 ! cardiovascular system endothelium +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0004582 ! venous system +relationship: part_of UBERON:0004582 ! venous system + +[Term] +id: UBERON:0004702 +name: respiratory system blood vessel endothelium +def: "A blood vessel endothelium that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:35732 +xref: MA:0001805 +is_a: UBERON:0004638 ! blood vessel endothelium +is_a: UBERON:0004807 ! respiratory system epithelium +intersection_of: UBERON:0004638 ! blood vessel endothelium +intersection_of: part_of UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0003504 ! respiratory system blood vessel + +[Term] +id: UBERON:0004703 +name: dorsal thalamus +subset: pheno_slim +subset: vertebrate_core +synonym: "dorsal thalamus" EXACT [FMA:62007] +synonym: "dorsal thalamus (Anthoney)" EXACT [FMA:62007] +synonym: "dorsal tier of thalamus" RELATED [DMBA:DTTh] +synonym: "thalamus dorsalis" EXACT LATIN [BTO:0001365, http://en.wikipedia.org/wiki/Thalamus] +synonym: "thalamus proper" EXACT [PMCID:PMC3345571] +synonym: "thalamus, pars dorsalis" EXACT [ZFA:0000653] +xref: BAMS:DOR +xref: BAMS:Dorsal_thalamus +xref: BM:Die-Th +xref: DHBA:10391 +xref: DMBA:16396 +xref: EHDAA2:0000692 +xref: EMAPA:35295 +xref: FMA:62007 +xref: HBA:4393 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1455 +xref: MA:0000180 +xref: ncithesaurus:Dorsal_Thalamus +xref: PBA:128013018 +xref: TAO:0000653 +xref: ZFA:0000653 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus +relationship: present_in_taxon NCBITaxon:117569 {source="Ariens, p. 1192"} +relationship: present_in_taxon NCBITaxon:7742 +relationship: present_in_taxon NCBITaxon:7776 {notes="http://neurolex.org/wiki/Category_talk:Thalamus", source="http://www.ncbi.nlm.nih.gov/pubmed/8167659"} + +[Term] +id: UBERON:0004704 +name: bone fossa +def: "A depression or hollow in a bone[WP]." [http://en.wikipedia.org/wiki/Fossa#Anatomy] +subset: vertebrate_core +synonym: "concavities" RELATED PLURAL [TAO:0001743] +synonym: "concavity" RELATED [TAO:0001743] +synonym: "depression" RELATED [TAO:0001743] +synonym: "depressions" RELATED PLURAL [TAO:0001743] +synonym: "fossa" BROAD [] +synonym: "fossae" RELATED PLURAL [TAO:0001743] +synonym: "groove" RELATED [TAO:0001743] +xref: AAO:0010439 +xref: Anatomy +xref: FMA:45791 +xref: http://linkedlifedata.com/resource/umls/id/C0836913 +xref: TAO:0001743 +xref: UMLS:C0836913 {source="ncithesaurus:Fossa"} +xref: VSAO:0005069 +xref: ZFA:0005388 +is_a: UBERON:0002553 {source="FMA-implied"} ! anatomical cavity +relationship: part_of UBERON:0001474 ! bone element + +[Term] +id: UBERON:0004705 +name: fenestra +def: "An opening in the skull or other bones[WP]." [http://en.wikipedia.org/wiki/Fenestra] +synonym: "fenestrae" RELATED PLURAL [] +xref: Fenestra:(anatomy) +is_a: UBERON:0002553 ! anatomical cavity +relationship: part_of UBERON:0001474 ! bone element + +[Term] +id: UBERON:0004706 +name: bulbus cordis +def: "a transient fetal dilation of the distal (or cranial) heart tube located where the arterial trunk joins the ventral roots of the aortic arches" [ISBN:0-683-40008-8, MP:0010568] +subset: pheno_slim +subset: vertebrate_core +synonym: "primitive right ventricle endocardium" EXACT [EHDAA2:0000197, JB:def] +xref: Bulbus:cordis +xref: EHDAA2:0000197 +xref: EHDAA:438 +xref: EHDAA:768 +xref: EMAPA:16333 +xref: FMA:70300 +xref: http://linkedlifedata.com/resource/umls/id/C1284055 +xref: http://www.snomedbrowser.com/Codes/Details/361525002 +xref: NCIT:C34114 +xref: UMLS:C1284055 {source="ncithesaurus:Bulbus_Cordis"} +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0000948 ! heart + +[Term] +id: UBERON:0004707 +name: pharyngula stage +def: "A stage that follows the blastula, gastrula and neurula stages. At the pharyngula stage, all vertebrate embryos show remarkable similarities." [http://en.wikipedia.org/wiki/Pharyngula] +subset: efo_slim +synonym: "pharyngula" RELATED [] +synonym: "phylotypic stage" EXACT [] +xref: DrerDO:0000052 +xref: EFO:0001310 +xref: http://en.wikipedia.org/wiki/Pharyngula +xref: OGES:000006 +xref: ZFS:0000050 +is_a: UBERON:0000105 ! life cycle stage +relationship: part_of UBERON:0000111 ! organogenesis stage +relationship: preceded_by UBERON:0000110 ! neurula stage + +[Term] +id: UBERON:0004708 +name: paired limb/fin +alt_id: UBERON:0009872 +def: "An appendage that is part of an appendage girdle complex." [https://github.com/geneontology/go-ontology/issues/9029, UBERON:cjm] +subset: homology_grouping +synonym: "girdle-associated appendage" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "jointed paired lateral appendage" NARROW [https://orcid.org/0000-0002-6601-2165] +synonym: "limb or fin" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "limb/fin" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "paired appendage" NARROW [VSAO:0000067] +synonym: "pectoral or pelvic appendage" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "pelvic/pectoral appendage" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: VSAO:0000067 +is_a: UBERON:0000026 {source="VSAO"} ! appendage +intersection_of: UBERON:0000026 ! appendage +intersection_of: part_of UBERON:0010707 ! appendage girdle complex +relationship: connected_to UBERON:0007823 ! appendage girdle region +relationship: develops_from UBERON:0004357 {evidence="definitional"} ! paired limb/fin bud +relationship: has_part UBERON:0000014 ! zone of skin +relationship: has_part UBERON:0001015 ! musculature +relationship: has_part UBERON:0002049 ! vasculature +relationship: has_skeleton UBERON:0011582 ! paired limb/fin skeleton +relationship: part_of UBERON:0010707 {source="VSAO"} ! appendage girdle complex + +[Term] +id: UBERON:0004709 +name: pelvic appendage +alt_id: UBERON:0009876 +def: "Paired appendage that consists of the posterior appendicular skeleton and associated soft and hard tissues, but excludes the pelvic girdle and its associated soft and hard tissues." [VSAO:0000150] +subset: homology_grouping +synonym: "hindlimb/pelvic fin" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "pelvic appendage" EXACT [VSAO:0000126] +synonym: "pelvic limb/fin" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "posterior appendage" BROAD [] +synonym: "posterior limb/fin" EXACT [] +synonym: "posterior paired appendage" EXACT [VSAO:0000126] +xref: VSAO:0000126 +is_a: UBERON:0004708 ! paired limb/fin +intersection_of: UBERON:0004708 ! paired limb/fin +intersection_of: part_of UBERON:0010709 ! pelvic complex +disjoint_from: UBERON:0004710 {source="lexical"} ! pectoral appendage +relationship: connected_to UBERON:0001271 ! pelvic girdle region +relationship: develops_from UBERON:0005420 {evidence="definitional"} ! pelvic appendage bud +relationship: has_skeleton UBERON:0007273 ! pelvic appendage skeleton +relationship: part_of UBERON:0010709 ! pelvic complex + +[Term] +id: UBERON:0004710 +name: pectoral appendage +alt_id: UBERON:0009875 +def: "Paired appendage that consists of the anterior appendicular skeleton and associated soft and hard tissues, but excludes the pectoral girdle and its associated soft and hard tissues." [VSAO:0000150-modified] +subset: homology_grouping +synonym: "anterior appendage" BROAD [] +synonym: "anterior limb/fin" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "anterior paired appendage" EXACT [VSAO:0000148] +synonym: "forelimb - pectoral fin" EXACT [VHOG:0001753] +synonym: "forelimb or pectoral fin" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "forelimb/pectoral fin" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "pectoral limb/fin" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: VHOG:0001753 +xref: VSAO:0000125 +is_a: UBERON:0004708 ! paired limb/fin +intersection_of: UBERON:0004708 ! paired limb/fin +intersection_of: part_of UBERON:0010708 ! pectoral complex +relationship: connected_to UBERON:0001421 ! pectoral girdle region +relationship: develops_from UBERON:0005419 {evidence="definitional"} ! pectoral appendage bud +relationship: has_skeleton UBERON:0007272 ! pectoral appendage skeleton +relationship: part_of UBERON:0010708 ! pectoral complex + +[Term] +id: UBERON:0004711 +name: jugular vein +def: "The jugular veins are veins that bring deoxygenated blood from the head back to the heart via the superior vena cava." [http://en.wikipedia.org/wiki/Jugular_vein] +synonym: "jugular" RELATED [] +synonym: "vena jugularis" RELATED [BTO:0001744] +xref: BTO:0001744 +xref: CALOHA:TS-0497 +xref: EMAPA:18638 +xref: GAID:536 +xref: http://linkedlifedata.com/resource/umls/id/C0022427 +xref: http://www.snomedbrowser.com/Codes/Details/244403000 +xref: Jugular:vein +xref: MA:0002154 +xref: MESH:D007601 +xref: NCIT:C12738 +xref: UMLS:C0022427 {source="ncithesaurus:Jugular_Vein"} +is_a: UBERON:0003502 ! neck blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +relationship: drains UBERON:0000033 ! head + +[Term] +id: UBERON:0004713 +name: corpus cavernosum penis +def: "One of the columns of erectile tissue forming the dorsum and sides of the penis." [BTO:0002019, http://en.wikipedia.org/wiki/Corpus_cavernosum_penis] +synonym: "cavernous body of penis" RELATED [BTO:0002019] +synonym: "corpus cavernosum" BROAD [BTO:0002019] +synonym: "corpus cavernosum of penis" EXACT [FMA:19618] +synonym: "corpus cavernosum penis" RELATED LATIN [http://en.wikipedia.org/wiki/Corpus_cavernosum_penis] +synonym: "corpus spongiosum penis" RELATED INCONSISTENT [BTO:0002019] +synonym: "penile corpus cavernosum" RELATED [BTO:0002019] +synonym: "penis erectile tissue" BROAD [MA:0001743] +synonym: "spongy body of male urethra" RELATED [BTO:0002019] +synonym: "spongy body of penis" RELATED [BTO:0002019] +xref: BTO:0002019 +xref: EMAPA:29850 +xref: EMAPA:29856 +xref: FMA:19618 +xref: http://en.wikipedia.org/wiki/Corpus_cavernosum_penis +xref: http://linkedlifedata.com/resource/umls/id/C0227937 +xref: http://linkedlifedata.com/resource/umls/id/C1709494 +xref: http://www.snomedbrowser.com/Codes/Details/245468004 +xref: MA:0001743 +xref: NCIT:C32382 +xref: NCIT:C49269 +xref: UMLS:C0227937 {source="ncithesaurus:Corpora_Cavernosa"} +xref: UMLS:C1709494 {source="ncithesaurus:Penis_Erectile_Tissue"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0006609 ! corpus cavernosum +intersection_of: UBERON:0006609 ! corpus cavernosum +intersection_of: part_of UBERON:0000989 ! penis +relationship: part_of UBERON:0000989 ! penis + +[Term] +id: UBERON:0004714 +name: septum pellucidum +def: "A triangular double membrane, consisting of glial cells and fibers (Heimer, 1996) separating the anterior horns of the lateral ventricles of the brain. It is situated in the median plane and bounded by the corpus callosum and the body and columns of the fornix." [BIRNLEX:1315] +subset: pheno_slim +synonym: "lateral septum" RELATED [MP:0012004] +synonym: "pellucidum" RELATED [BTO:0003448] +synonym: "septal pellucidum" EXACT [BIRNLEX:1315] +synonym: "septum gliosum" RELATED LATIN [NeuroNames:256] +synonym: "septum lucidum" RELATED [BTO:0003448, MP:0012004] +synonym: "septum pellucidum of telencephalic ventricle" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "supracommissural septum" EXACT [FMA:61844] +xref: BAMS:spt +xref: BAMS:SptP +xref: BIRNLEX:1315 +xref: BTO:0003448 +xref: DHBA:12098 +xref: FMA:61844 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=256 {source="BIRNLEX:1315"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=256 +xref: http://linkedlifedata.com/resource/umls/id/C0036700 +xref: http://www.snomedbrowser.com/Codes/Details/362313003 +xref: MA:0002979 +xref: MESH:D012688 +xref: NCIT:C33536 +xref: Septum:pellucidum +xref: UMLS:C0036700 {source="ncithesaurus:Septum_Pellucidum"} +xref: UMLS:C0036700 {source="BIRNLEX:1315"} +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0000446 ! septum of telencephalon +relationship: part_of UBERON:0000446 ! septum of telencephalon +relationship: part_of UBERON:0002285 ! telencephalic ventricle + +[Term] +id: UBERON:0004715 +name: annulus fibrosus disci intervertebralis +def: "The ring of fibrocartilage and fibrous tissue forming the circumference of the intervertebral disc; surrounds the nucleus pulposus, which is prone to herniation when the annulus fibrosus is compromised." [BTO:0003629, http://en.wikipedia.org/wiki/Annulus_fibrosus_disci_intervertebralis] +synonym: "annulus fibrosus" BROAD [MA:0000111] +synonym: "annulus fibrosus of intervertebral disc" RELATED [BTO:0003629] +synonym: "anulus fibrosus (diskus intervertebralis)" EXACT [FMA:13551] +synonym: "anulus fibrosus of intervertebral disk" EXACT [FMA:13551] +synonym: "fibrous ring of intervertebral disc" RELATED [BTO:0003629] +xref: BTO:0003629 +xref: EMAPA:32670 +xref: FMA:13551 +xref: http://en.wikipedia.org/wiki/Annulus_fibrosus_disci_intervertebralis +xref: MA:0000111 +is_a: UBERON:0006444 ! annulus fibrosus +intersection_of: UBERON:0006444 ! annulus fibrosus +intersection_of: part_of UBERON:0001066 ! intervertebral disk +disjoint_from: UBERON:0006008 ! fibrous ring of heart +relationship: part_of UBERON:0001066 ! intervertebral disk + +[Term] +id: UBERON:0004716 +name: conceptus +def: "The embryo and its adnexa (appendages or adjunct parts) or associated membranes (i.e. the products of conception) The conceptus includes all structures that develop from the zygote, both embryonic and extraembryonic. It includes the embryo as well as the embryonic part of the placenta and its associated membranes - amnion, chorion (gestational sac), and yolk sac[WP]." [BTO:0003834, http://en.wikipedia.org/wiki/Conceptus] +synonym: "embryo plus adnexa" EXACT [] +xref: AEO:0000194 +xref: BTO:0003834 +xref: EHDAA2:0000001 +xref: EHDAA2:0003235 +xref: EMAPA:36040 +xref: http://en.wikipedia.org/wiki/Conceptus +xref: http://linkedlifedata.com/resource/umls/id/C1516779 +xref: NCIT:C34131 +xref: UMLS:C1516779 {source="ncithesaurus:Conceptus"} +is_a: UBERON:0000061 ! anatomical structure +relationship: existence_ends_with UBERON:0000068 ! embryo stage +relationship: existence_starts_with UBERON:0000068 ! embryo stage +relationship: has_part UBERON:0002050 ! embryonic structure +relationship: has_part UBERON:0016887 ! entire extraembryonic component + +[Term] +id: UBERON:0004717 +name: Brodmann (1909) area 29 +def: "Brodmann area 29, also known as granular retrolimbic area 29 or granular retrosplenial cortex, is a cytoarchitecturally defined portion of the retrosplenial region of the cerebral cortex. In the human it is a narrow band located in the isthmus of cingulate gyrus. Cytoarchitecturally it is bounded internally by the ectosplenial area 26 and externally by the agranular retrolimbic area 30 (Brodmann-1909)." [http://en.wikipedia.org/wiki/Brodmann_area_29] +synonym: "area 29 of Brodmann" EXACT [FMA:68626] +synonym: "area 29 of Brodmann-1909" EXACT [BIRNLEX:1763] +synonym: "area retrolimbica granularis" EXACT [BIRNLEX:1763] +synonym: "B09-29" BROAD ABBREVIATION [BIRNLEX:1763, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-29" EXACT [BIRNLEX:1763] +synonym: "BA29" RELATED [FMA:68626] +synonym: "Brodmann (1909) area 29" EXACT [BIRNLEX:1763] +synonym: "Brodmann area 29" EXACT [FMA:68626] +synonym: "Brodmann area 29, granular retrolimbic" EXACT [BIRNLEX:1763] +synonym: "Brodmann's area 29" EXACT [FMA:68626] +synonym: "granular retrolimbic area 29" RELATED [BTO:0003978, http://en.wikipedia.org/wiki/Brodmann_area_29] +xref: BIRNLEX:1763 +xref: Brodmann_area:29 +xref: BTO:0003978 +xref: FMA:68626 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2104 +xref: http://linkedlifedata.com/resource/umls/id/C1272490 +xref: UMLS:C1272490 {source="BIRNLEX:1763"} +is_a: UBERON:0013529 {source="FMA"} ! Brodmann area + +[Term] +id: UBERON:0004718 +name: Brodmann (1909) area 26 +def: "." [http://en.wikipedia.org/wiki/Brodmann_area_26] +synonym: "area 26 of Brodmann" EXACT [FMA:68623] +synonym: "area 26 of Brodmann (guenon)" RELATED [NeuroNames:1031] +synonym: "area 26 of Brodmann-1909" EXACT [BIRNLEX:1757] +synonym: "area ectosplenialis" EXACT [BIRNLEX:1757] +synonym: "B09-26" BROAD ABBREVIATION [BIRNLEX:1757, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-26" EXACT [BIRNLEX:1757] +synonym: "BA26" RELATED [FMA:68623] +synonym: "Brodmann (1909) area 26" EXACT [BIRNLEX:1757] +synonym: "Brodmann area 26" EXACT [FMA:68623] +synonym: "Brodmann area 26, ectosplenial" EXACT [BIRNLEX:1757] +synonym: "brodmann's area 26" RELATED [NeuroNames:1031] +synonym: "ectosplenial area" EXACT [FMA:68623] +synonym: "ectosplenial area 26" RELATED [BTO:0003979, http://en.wikipedia.org/wiki/Brodmann_area_26] +xref: BIRNLEX:1757 +xref: Brodmann_area:26 +xref: BTO:0003979 +xref: FMA:68623 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1031 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1031 {source="BIRNLEX:1757"} +xref: http://linkedlifedata.com/resource/umls/id/C1272489 +xref: UMLS:C1272489 {source="BIRNLEX:1757"} +is_a: UBERON:0013529 {source="FMA"} ! Brodmann area + +[Term] +id: UBERON:0004719 +name: kidney arcuate vein +def: "Any of the veins that parallel the arcuate arteries, receive blood from the interlobular veins and straight venules, and terminate in the interlobar veins." [ISBN:0-683-40008-8, MP:0011325] +subset: pheno_slim +synonym: "arciform vein of kidney" EXACT [MP:0011325] +synonym: "arcuate vein" BROAD [MA:0002593] +synonym: "arcuate vein of kidney" EXACT [MP:0011325] +synonym: "arcuate veins" RELATED [http://en.wikipedia.org/wiki/Arcuate_vein] +synonym: "renal arcuate vein" EXACT [MP:0011325] +synonym: "venae arcuatae renis" EXACT LATIN [http://en.wikipedia.org/wiki/Arcuate_vein] +xref: Arcuate:vein +xref: EMAPA:28221 +xref: FMA:272193 +xref: FMA:321527 +xref: MA:0002593 +is_a: UBERON:0013126 ! vein of abdomen +is_a: UBERON:0014401 ! renal venous blood vessel +relationship: fma_set_term FMA:71632 + +[Term] +id: UBERON:0004720 +name: cerebellar vermis +def: "A subregion of the cerebellar cortex, consisting of the most medial zone of the cerebellar cortex, stradding the midline. May be continuous with the lateral cerebellar hemispheres in some areas of the cerebellum, e.g., dorsally, or separated by deeper fissures in others (e.g., ventrally)" [BIRNLEX:1106] +subset: pheno_slim +synonym: "cerebellum vermis" EXACT [FMA:76928] +synonym: "vermal parts of the cerebellum" EXACT [BIRNLEX:1175] +synonym: "vermal regions" EXACT [ABA:VERM] +synonym: "vermis" RELATED [http://en.wikipedia.org/wiki/Cerebellar_vermis] +synonym: "vermis cerebelli" RELATED LATIN [http://en.wikipedia.org/wiki/Cerebellar_vermis] +synonym: "vermis cerebelli [I-X]" EXACT LATIN [FMA:76928, FMA:TA] +synonym: "vermis of cerebellum" EXACT [FMA:76928] +synonym: "vermis of cerebellum [I-X]" EXACT [FMA:76928] +xref: BAMS:Ver +xref: BAMS:VERM +xref: BIRNLEX:1106 +xref: BIRNLEX:1175 +xref: CALOHA:TS-2059 +xref: Cerebellar:vermis +xref: DHBA:10658 +xref: DMBA:16814 +xref: EMAPA:35214 +xref: EV:0100298 +xref: FMA:76928 +xref: HBA:4698 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2463 +xref: http://linkedlifedata.com/resource/umls/id/C0228482 +xref: http://www.snomedbrowser.com/Codes/Details/279105006 +xref: MA:0000202 +xref: MBA:645 +xref: NCIT:C33866 +xref: UMLS:C0228482 {source="ncithesaurus:Vermis"} +xref: UMLS:C0228482 {source="BIRNLEX:1106"} +is_a: UBERON:0002749 ! regional part of cerebellar cortex +relationship: contributes_to_morphology_of UBERON:0002129 ! cerebellar cortex +relationship: develops_from UBERON:0004008 ! cerebellar plate +relationship: intersects_midsagittal_plane_of UBERON:0002037 ! cerebellum + +[Term] +id: UBERON:0004721 +name: crista ampullaris +def: "The crista ampullaris is the sensory organ of rotation located in the semicircular canal of the inner ear. The function of the crista ampullaris is to sense angular acceleration and deceleration." [http://en.wikipedia.org/wiki/Crista_ampullaris] +subset: organ_slim +subset: pheno_slim +synonym: "ampullary crest" RELATED [MA:0002771] +synonym: "ampullary crest of semicircular duct" EXACT [FMA:77714] +synonym: "cristae ampullares" RELATED [http://en.wikipedia.org/wiki/Crista_ampullaris] +xref: Crista:ampullaris +xref: EMAPA:32791 +xref: FMA:77714 +xref: http://linkedlifedata.com/resource/umls/id/C0229465 +xref: http://www.snomedbrowser.com/Codes/Details/368953000 +xref: MA:0002771 +xref: NCIT:C32063 +xref: UMLS:C0229465 {source="ncithesaurus:Ampullary_Crest"} +is_a: UBERON:0000020 ! sense organ +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0004043 ! semicircular canal ampulla +relationship: part_of UBERON:0004043 {source="MA"} ! semicircular canal ampulla + +[Term] +id: UBERON:0004722 +name: deep cervical lymph node +def: "The deep cervical lymph nodes are a group of cervical lymph nodes found near the internal jugular vein. They can be divided into upper and lower groups, or superior and inferior groups. Alternatively, they can be divided into deep anterior cervical lymph nodes and deep lateral cervical lymph nodes. They can also be divided into three groups: superior deep jugular, middle deep jugular, and 'inferior deep jugular'." [http://en.wikipedia.org/wiki/Deep_cervical_lymph_nodes] +synonym: "lower jugular nodes" RELATED [http://en.wikipedia.org/wiki/Deep_cervical_lymph_nodes] +synonym: "middle jugular nodes" RELATED [http://en.wikipedia.org/wiki/Deep_cervical_lymph_nodes] +synonym: "upper jugular nodes" RELATED [http://en.wikipedia.org/wiki/Deep_cervical_lymph_nodes] +xref: EMAPA:37510 {source="MA:th"} +xref: http://en.wikipedia.org/wiki/Deep_cervical_lymph_nodes +xref: http://linkedlifedata.com/resource/umls/id/C0458298 +xref: http://www.snomedbrowser.com/Codes/Details/279145002 +xref: MA:0002885 +xref: NCIT:C32431 +xref: UMLS:C0458298 {source="ncithesaurus:Deep_Cervical_Lymph_Node"} +is_a: UBERON:0002429 ! cervical lymph node +is_a: UBERON:0015918 ! deep lymph node + +[Term] +id: UBERON:0004723 +name: interlobular artery +def: "The branches of the arcuate arteries of the kidney that radiate outward throught the renal columns and supply the glomeruli[MP]. The first set of renal bloodvessels, the interlobular arteries (or cortical radiate arteries, or cortical radial arteries), are given off at right angles from the side of the arcuate arteries looking toward the cortical substance, and pass directly outward between the medullary rays to reach the fibrous tunic, where they end in the capillary network of this part. These vessels do not anastomose with each other, but form what are called end-arteries. In their outward course they give off lateral branches; these are the afferent vessels for the renal corpuscles; they enter the capsule, and end in the glomerulus. From each tuft the corresponding efferent vessel arises, and, having made its egress from the capsule near to the point where the afferent vessel enters, breaks up into a number of branches, which form a dense plexus within Bowman's capsule." [http://en.wikipedia.org/wiki/Interlobular_arteries, MP:0011316] +subset: pheno_slim +synonym: "arteriae corticales radiatae" RELATED LATIN [http://en.wikipedia.org/wiki/Interlobular_arteries] +synonym: "arteriae interlobulares renis" RELATED LATIN [http://en.wikipedia.org/wiki/Interlobular_arteries] +synonym: "cortical radial arteries" RELATED [http://en.wikipedia.org/wiki/Interlobular_arteries] +synonym: "interlobular" RELATED [http://en.wikipedia.org/wiki/Interlobular_arteries] +synonym: "interlobular renal artery" EXACT [FMA:70498] +synonym: "kidney interlobular artery" EXACT [MP:0011316] +synonym: "renal interlobular artery" RELATED [FMA:70498] +xref: EMAPA:28212 +xref: FMA:70498 +xref: http://linkedlifedata.com/resource/umls/id/C1512856 +xref: http://www.snomedbrowser.com/Codes/Details/76147008 +xref: Interlobular:arteries +xref: MA:0002584 +xref: NCIT:C32826 +xref: UMLS:C1512856 {source="ncithesaurus:Interlobular_Artery"} +is_a: UBERON:0003644 ! kidney arterial blood vessel +disjoint_from: UBERON:0009885 {source="Renal:circulation"} ! interlobar artery + +[Term] +id: UBERON:0004724 +name: medial palpebral ligament +def: "The medial palpebral ligament (tendo oculi), about 4 mm. in length and 2 mm. in breadth, is attached to the frontal process of the maxilla in front of the lacrimal groove. Crossing the lacrimal sac, it divides into two parts, upper and lower, each attached to the medial end of the corresponding tarsus. As the ligament crosses the lacrimal sac, a strong aponeurotic is given off from its posterior surface; this expands over the sac, and is attached to the posterior lacrimal crest." [http://en.wikipedia.org/wiki/Medial_palpebral_ligament] +synonym: "l. palpebrale mediale" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_palpebral_ligament] +xref: EMAPA:37608 {source="MA:th"} +xref: http://en.wikipedia.org/wiki/Medial_palpebral_ligament +xref: http://linkedlifedata.com/resource/umls/id/C0229251 +xref: http://www.snomedbrowser.com/Codes/Details/280578002 +xref: MA:0001258 +xref: NCIT:C52724 +xref: UMLS:C0229251 {source="ncithesaurus:Medial_Palpebral_Ligament"} +is_a: UBERON:0000211 ! ligament +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0004772 ! eyelid tarsus + +[Term] +id: UBERON:0004725 +name: piriform cortex +def: "the subdivision of the laminated olfactory cortex with only three main layers that receive monosynaptic input from the olfactory bulb via the lateral olfactory tract; it is located bilaterally in the ventrolateral forebrain and is commonly divided into anterior and posterior regions" [http://www.ncbi.nlm.nih.gov/pubmed/17714095, MP:0010009] +subset: pheno_slim +synonym: "area prepiriformis" RELATED LATIN [NeuroNames:165] +synonym: "cortex piriformis" EXACT LATIN [http://en.wikipedia.org/wiki/Piriform_cortex] +synonym: "eupalaeocortex" RELATED LATIN [NeuroNames:165] +synonym: "olfactory pallium" RELATED [ISBN:0471888893] +synonym: "palaeocortex II" RELATED LATIN [NeuroNames:165] +synonym: "paleopallium" RELATED [http://en.wikipedia.org/wiki/Piriform_cortex] +synonym: "piriform area" RELATED [BTO:0002651, MA:0000978] +synonym: "piriform lobe" RELATED [BTO:0002651] +synonym: "primary olfactory areas" EXACT [BIRNLEX:2706] +synonym: "primary olfactory cortex" RELATED INCONSISTENT [http://en.wikipedia.org/wiki/Piriform_cortex] +synonym: "pyriform cortex" RELATED [http://en.wikipedia.org/wiki/Piriform_cortex] +synonym: "pyriform lobe" RELATED [http://en.wikipedia.org/wiki/Piriform_cortex] +synonym: "regio praepiriformis" RELATED LATIN [NeuroNames:165] +xref: BAMS:PIR +xref: BAMS:Pir +xref: BIRNLEX:1097 +xref: BTO:0002651 +xref: DHBA:10311 +xref: EMAPA:32767 +xref: EV:0100178 +xref: HBA:10142 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=165 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=165 {source="BIRNLEX:1097"} +xref: http://linkedlifedata.com/resource/umls/id/C0228280 +xref: http://www.snomedbrowser.com/Codes/Details/369098004 +xref: MA:0000978 +xref: Piriform:cortex +xref: UMLS:C0228280 {source="BIRNLEX:1097"} +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0002894 ! olfactory cortex +relationship: part_of UBERON:0002894 ! olfactory cortex + +[Term] +id: UBERON:0004726 +name: vasa recta +def: "In the blood supply of the kidney, the vasa recta renis (or straight arteries of kidney, or straight arterioles of kidney) form a series of straight capillaries in the medulla. They lie parallel to the loop of Henle. These vessels branch off the efferent arterioles of juxtamedullary nephrons (those nephrons closest to the medulla), enter the medulla, and surround the loop of Henle." [http://en.wikipedia.org/wiki/Vasa_recta] +subset: pheno_slim +synonym: "arteria recta" RELATED [http://en.wikipedia.org/wiki/Vasa_recta] +synonym: "arteriae rectae" RELATED [http://en.wikipedia.org/wiki/Vasa_recta] +synonym: "arteriolae rectae renis" EXACT LATIN [FMA:72006, FMA:TA] +synonym: "arteriolae rectae renis" RELATED LATIN [http://en.wikipedia.org/wiki/Vasa_recta] +synonym: "arteriolae recti" RELATED [http://en.wikipedia.org/wiki/Vasa_recta] +synonym: "kidney vasa recta" EXACT [MP:0011324] +synonym: "renal medullary capillary" EXACT [EMAPA:30043] +synonym: "set of straight arterioles of kidney" EXACT [FMA:72006] +synonym: "straight arterioles of kidney" EXACT [FMA:72006] +synonym: "vasa recta of kidney" EXACT [FMA:72006] +synonym: "vasa recta renis" EXACT LATIN [FMA:72006, FMA:TA] +synonym: "vasa rectae" RELATED [http://en.wikipedia.org/wiki/Vasa_recta] +xref: EMAPA:30043 +xref: FMA:72006 +xref: galen:ArteriaeRectae +xref: MA:0002595 +xref: Vasa:recta +is_a: UBERON:0001140 ! renal vein + +[Term] +id: UBERON:0004727 +name: cochlear nerve +def: "A nerve in the head that carries signals from the cochlea of the inner ear to the brain. It is part of the vestibulocochlear nerve, the 8th cranial nerve which is found in higher vertebrates; the other portion of the 8th cranial nerve is the vestibular nerve which carries spatial orientation information from the semicircular canals. The cochlear nerve is a sensory nerve, one which conducts to the brain information about the environment, in this case acoustic energy impinging on the tympanic membrane. The cochlear nerve arises from within the cochlea and extends to the brainstem, where its fibers make contact with the cochlear nucleus, the next stage of neural processing in the auditory system[WP]." [http://en.wikipedia.org/wiki/Cochlear_nerve] +subset: pheno_slim +subset: uberon_slim +synonym: "auditory nerve" EXACT [FMA:53431] +synonym: "cochlear component" BROAD [] +synonym: "cochlear root of acoustic nerve" EXACT [FMA:53431] +synonym: "cochlear root of eighth cranial nerve" EXACT [FMA:53431] +synonym: "nervus vestibulocochlearis" RELATED [BTO:0003490] +synonym: "vestibulocochlear nerve cochlear component" RELATED [EMAPA:17802] +synonym: "vestibulocochlear VIII nerve cochlear component" EXACT [MA:0001110] +xref: BAMS:cVIIIn +xref: BM:VIIIN +xref: BTO:0003490 +xref: Cochlear:nerve +xref: EHDAA2:0002195 +xref: EMAPA:17802 +xref: FMA:53431 +xref: GAID:723 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1406 +xref: http://linkedlifedata.com/resource/umls/id/C0009201 +xref: http://www.snomedbrowser.com/Codes/Details/280286001 +xref: MA:0001110 +xref: MBA:948 +xref: MESH:D003056 +xref: NCIT:C12697 +xref: OpenCyc:Mx4rwIhQfZwpEbGdrcN5Y29ycA +xref: UMLS:C0009201 {source="ncithesaurus:Cochlear_Nerve"} +xref: VHOG:0001182 +is_a: UBERON:0011779 ! nerve of head region +intersection_of: UBERON:0001021 ! nerve +intersection_of: branching_part_of UBERON:0001648 ! vestibulocochlear nerve +intersection_of: extends_fibers_into UBERON:0001720 ! cochlear nucleus +intersection_of: innervates UBERON:0001844 ! cochlea +relationship: branching_part_of UBERON:0001648 ! vestibulocochlear nerve +relationship: extends_fibers_into UBERON:0001720 ! cochlear nucleus +relationship: innervates UBERON:0001844 ! cochlea +relationship: part_of UBERON:0001648 ! vestibulocochlear nerve + +[Term] +id: UBERON:0004728 +name: amphibian larval stage +def: "Amphibian larvae, sometimes called pollywogs or tadpoles, hatch from eggs and begin to grow limbs and other adult physical features at various times, depending on the species, before they metamorphose into the adult form." [GO:0002117] +synonym: "larva" RELATED [XAO:1000008] +synonym: "larva stage" BROAD [] +synonym: "polliwog" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "polliwog stage" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "tadpole" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +synonym: "tadpole stage" NARROW SENSU [http://en.wikipedia.org/wiki/Larva] +xref: XAO:1000008 +xref: XtroDO:0000056 +is_a: UBERON:0000069 ! larval stage +relationship: present_in_taxon NCBITaxon:8355 + +[Term] +id: UBERON:0004729 +name: nematode larval stage +def: "Nematode larval development begins with the newly hatched first-stage larva (L1) and ends with the end of the last larval stage (for example the fourth larval stage (L4) in C. elegans). Each stage of nematode larval development is characterized by proliferation of specific cell lineages and an increase in body size without alteration of the basic body plan. Nematode larval stages are separated by molts in which each stage-specific exoskeleton, or cuticle, is shed and replaced anew." [GO:0002119] +xref: WBls:0000023 +is_a: UBERON:0000069 ! larval stage + +[Term] +id: UBERON:0004730 +name: instar larval stage +def: "This begins with the newly hatched first-instar larva, through its maturation to the end of the last larval stage. An example of this process is found in Drosophila melanogaster." [GO:0002168] +xref: FBdv:00005336 +is_a: UBERON:0000069 ! larval stage +relationship: present_in_taxon NCBITaxon:7227 + +[Term] +id: UBERON:0004731 +name: neuromere +def: "A transverse unitary subdivision of the neural tube that shares a common dorsoventral structure (floor, basal, alar, and roof plates), but each having differential molecular identities and fates; they comprise the secondary prosencephalon, diencephalon (prosomeres), the midbrain (mesomeres), and the hindbrain (rhombomeres)." [https://doi.org/10.1016/j.tins.2013.06.004, https://github.com/obophenotype/uberon/issues/318] +subset: pheno_slim +synonym: "neural metamere" RELATED [] +synonym: "neural segment" RELATED [] +synonym: "neural tube metameric segment" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "neural tube segment" EXACT [] +synonym: "neuromere" EXACT [] +synonym: "neuromeres" EXACT PLURAL [TAO:0001328] +xref: http://en.wikipedia.org/wiki/Neuromere +xref: NLX:147842 +xref: TAO:0001328 +xref: ZFA:0001328 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004732 ! segmental subdivision of nervous system +intersection_of: UBERON:0004732 ! segmental subdivision of nervous system +intersection_of: part_of UBERON:0001049 ! neural tube +relationship: part_of UBERON:0001049 ! neural tube +created_by: Melissa Haendel +creation_date: 2009-06-18T09:00:04Z + +[Term] +id: UBERON:0004732 +name: segmental subdivision of nervous system +def: "Any segmental subdivision of a nervous system. Includes metameric developmental segments, such as vertebrates neuromeres." [FBbt:00005140, http://orcid.org/0000-0002-6601-2165] +subset: non_informative +synonym: "neuromere" RELATED [FBbt:00005140] +xref: FBbt:00005140 +is_a: UBERON:0000063 ! organ subunit +intersection_of: UBERON:0000063 ! organ subunit +intersection_of: part_of UBERON:0001016 ! nervous system +relationship: part_of UBERON:0001016 ! nervous system + +[Term] +id: UBERON:0004733 +name: segmental subdivision of hindbrain +def: "An organ subunit that is part of a hindbrain [Automatically generated definition]." [OBOL:automatic] +subset: non_informative +synonym: "hindbrain segment" EXACT [FMA:61998] +synonym: "segment of hindbrain" EXACT [FMA:61998] +xref: FMA:61998 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004732 ! segmental subdivision of nervous system +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000063 ! organ subunit +intersection_of: part_of UBERON:0002028 ! hindbrain +relationship: part_of UBERON:0002028 ! hindbrain + +[Term] +id: UBERON:0004734 +name: gastrula +alt_id: UBERON:0007012 +def: "Organism at the gastrula stage." [http://en.wikipedia.org/wiki/Gastrula, http://en.wikipedia.org/wiki/Trilaminar_blastocyst] +subset: pheno_slim +synonym: "blastocystis trilaminaris" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "gastrula embryo" EXACT [BILA:0000060] +synonym: "tri-laminar disc" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "tri-laminar disk" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "trilaminar blastocyst" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "trilaminar blastoderm" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "trilaminar disc" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "trilaminar disk" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "trilaminar germ" RELATED [https://orcid.org/0000-0002-6601-2165] +xref: BILA:0000060 +xref: BTO:0001403 +xref: FBbt:00005317 +xref: FMA:293108 +xref: GAID:1302 +xref: http://en.wikipedia.org/wiki/Gastrula +xref: http://linkedlifedata.com/resource/umls/id/C0017199 +xref: http://linkedlifedata.com/resource/umls/id/C1284022 +xref: MESH:A16.254.412 +xref: MIAA:0000179 +xref: NCIT:C34057 +xref: NCIT:C34058 +xref: Trilaminar:blastocyst +xref: UMLS:C0017199 {source="ncithesaurus:Gastrula"} +xref: UMLS:C1284022 {source="ncithesaurus:Trilaminar_Embryonic_Disc"} +is_a: UBERON:0000922 ! embryo +intersection_of: UBERON:0000468 ! multicellular organism +intersection_of: existence_starts_and_ends_during UBERON:0000109 ! gastrula stage +relationship: develops_from UBERON:0000307 ! blastula +relationship: existence_starts_and_ends_during UBERON:0000109 ! gastrula stage + +[Term] +id: UBERON:0004735 +name: archenteron +def: "The cavity of a gastrula forming a primitive gut." [BTO:0001696] +synonym: "gastrocoel" RELATED [XAO:0000092] +synonym: "mesenteron" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "primitive endodermal cavity" RELATED [] +xref: AAO:0010430 +xref: BTO:0001696 +xref: http://en.wikipedia.org/wiki/Archenteron +xref: XAO:0000092 +is_a: UBERON:0002050 ! embryonic structure +relationship: dubious_for_taxon NCBITaxon:7955 {source="http://zfin.org/zf_info/zfbook/stages/gast.html"} +relationship: part_of UBERON:0004734 ! gastrula +relationship: part_of UBERON:0007026 ! presumptive gut + +[Term] +id: UBERON:0004736 +name: metanephric glomerulus +def: "glomerulus of the mature vertebrate kidney, or metanephros." [GO:0072224] +synonym: "glomerulus of metanephros" EXACT [] +xref: VHOG:0001242 +is_a: UBERON:0000074 ! renal glomerulus +intersection_of: UBERON:0000074 ! renal glomerulus +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0000081 ! metanephros + +[Term] +id: UBERON:0004737 +name: metanephric collecting duct +def: "A collecting duct of renal tubule that is part of a metanephros [Automatically generated definition]." [OBOL:automatic] +synonym: "collecting duct of metanephros" EXACT [] +synonym: "metanephric collecting tubule" RELATED [VHOG:0000983] +xref: VHOG:0000983 +is_a: UBERON:0001232 ! collecting duct of renal tubule +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001232 ! collecting duct of renal tubule +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: develops_from UBERON:0003220 {source="Wikipedia-abduced"} ! metanephric mesenchyme +relationship: develops_from UBERON:0014706 ! primitive renal collecting duct system +relationship: part_of UBERON:0005110 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephric nephron + +[Term] +id: UBERON:0004738 +name: metanephric juxtaglomerular apparatus +def: "juxtaglomerular apparatus of the mature vertebrate kidney, or metanephros." [GO:0072206] +synonym: "juxtaglomerular apparatus of metanephros" EXACT [] +is_a: UBERON:0002303 ! juxtaglomerular apparatus +intersection_of: UBERON:0002303 ! juxtaglomerular apparatus +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0010533 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephros cortex + +[Term] +id: UBERON:0004739 +name: pronephric glomerulus +alt_id: UBERON:0004191 +def: "The glomus forms from the splanchnic intermediate mesoderm and is the vascularized filtration unit, filtering the blood before it enters the tubules. The glomus is external to the nephron and extends over more than one body segment." [GO:0072013, GOC:mtg_kidney_jan10, http://www.ncbi.nlm.nih.gov/pubmed/10572058, http://www.ncbi.nlm.nih.gov/pubmed/15647339, http://www.ncbi.nlm.nih.gov/pubmed/9268568, https://doi.org/10.1371/journal.pone.0099864, XAO:0000318] +synonym: "corpuscle" RELATED [XAO:0000318] +synonym: "glomera" RELATED PLURAL [XAO:0000318] +synonym: "glomerulus of pronephros" EXACT [] +synonym: "glomus" NARROW [XAO:0000318] +synonym: "pronephric glomera" RELATED [VHOG:0001237] +synonym: "pronephric glomeruli" RELATED PLURAL [VHOG:0001237] +synonym: "pronephric glomus" RELATED [VHOG:0001237] +xref: AAO:0011049 +xref: http://www.snomedbrowser.com/Codes/Details/360548001 +xref: TAO:0001557 +xref: VHOG:0001237 +xref: XAO:0000318 +xref: ZFA:0001557 +is_a: UBERON:0000074 ! renal glomerulus +intersection_of: UBERON:0000074 ! renal glomerulus +intersection_of: part_of UBERON:0002120 ! pronephros +relationship: develops_from UBERON:0007128 {source="XAO"} ! glomeral mesenchyme +relationship: part_of UBERON:0002120 ! pronephros + +[Term] +id: UBERON:0004740 +name: basibranchial bone +def: "A basibranchial element that is bone. Basibranchial elements are ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton" [http://orcid.org/0000-0002-6601-2165, TAO:wd] +subset: efo_slim +synonym: "basibranchial bone" EXACT [TAO:0000170] +synonym: "basibranchial bones" EXACT PLURAL [] +synonym: "copula 1 bone" RELATED [] +synonym: "copula I bone" RELATED [] +xref: AAO:0000686 +xref: EFO:0003503 +xref: TAO:0000170 +xref: ZFA:0000170 +is_a: UBERON:0001474 ! bone element +is_a: UBERON:0013746 ! basibranchial element +intersection_of: UBERON:0013746 ! basibranchial element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue + +[Term] +id: UBERON:0004741 +name: cleithrum +def: "Dermal bone on the margin of the scapula. The cleithrum is attached to the skull in fishes, but free from the latter in amphibians and disappears early in the evolution of reptiles." [http://en.wikipedia.org/wiki/Cleithrum, VSAO:0000187] +subset: efo_slim +synonym: "cleithra" EXACT PLURAL [ZFA:0000184] +synonym: "cleithrum bone" EXACT PLURAL [] +synonym: "cleithrum@fr" EXACT [TAO:0000184] +synonym: "clithra@fr" EXACT [TAO:0000184] +synonym: "clithrum@fr" EXACT [TAO:0000184] +xref: AAO:0000750 +xref: EFO:0003507 +xref: http://en.wikipedia.org/wiki/Cleithrum +xref: TAO:0000184 +xref: VSAO:0000187 +xref: ZFA:0000184 +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0008907 {source="ZFA", source="ZFIN:ZDB-PUB-060210-7"} ! dermal bone + +[Term] +id: UBERON:0004742 +name: dentary +def: "The dentary is a dermal bone that forms the antero-lateral part of the lower jaw in fishes and amphibians, extending to the whole lower jaw in mammals[VHOG,modified]." [VHOG:0001022] +subset: efo_slim +synonym: "dentale" RELATED [AAO:0000124] +synonym: "dentaries" EXACT PLURAL [TAO:0000191] +synonym: "dentary bone" EXACT [ZFA:0000191] +synonym: "os dentale" RELATED [AAO:0000124] +synonym: "sur-angulaire" RELATED [AAO:0000124] +xref: AAO:0000124 +xref: EFO:0003508 +xref: http://palaeos.com/vertebrates/bones/dermal/images/Dentary1.gif +xref: TAO:0000191 +xref: VHOG:0001022 +xref: ZFA:0000191 +is_a: UBERON:0004768 ! bone of lower jaw +is_a: UBERON:0008907 {source="ZFA"} ! dermal bone +is_a: UBERON:0015212 ! lateral structure +relationship: develops_from UBERON:0010336 {source="EHDAA2"} ! mandibular process mesenchyme from neural crest +relationship: has_developmental_contribution_from UBERON:0003324 {source="EHDAA2-modified"} ! mesenchyme of lower jaw +relationship: in_lateral_side_of UBERON:0003278 ! skeleton of lower jaw +relationship: part_of UBERON:0003113 {notes="mandibular series", source="ISBN:0073040584", source="ZFA"} ! dermatocranium + +[Term] +id: UBERON:0004743 +name: coracoid bone +def: "Endochondral bone that is paired and forms part of the socket for the humerus in tetrapods and acts as base of the pectoral fin in fish." [http://en.wikipedia.org/wiki/Coracoid, VSAO:curator] +synonym: "clavicula" RELATED [AAO:0000764] +synonym: "clavicula posterior" RELATED [AAO:0000764] +synonym: "clavicula vera" RELATED [AAO:0000764] +synonym: "coracocïde@fr" EXACT [TAO:0000332] +synonym: "coracoid" EXACT [ZFA:0000332] +synonym: "coracoideum" RELATED [AAO:0000764] +synonym: "coracoidien" RELATED [AAO:0000764] +synonym: "coracoids" EXACT [ZFA:0000332] +synonym: "hypocoracocïde@fr" EXACT [TAO:0000332] +synonym: "metacoracoid" RELATED [VSAO:0000158] +synonym: "pars sternalis scapulae" RELATED [AAO:0000764] +xref: AAO:0000764 +xref: http://en.wikipedia.org/wiki/Coracoid +xref: TAO:0000332 +xref: VSAO:0000158 +xref: ZFA:0000332 +is_a: UBERON:0002513 {source="VSAO"} ! endochondral bone +is_a: UBERON:0007829 ! pectoral girdle bone +disjoint_from: UBERON:0006633 ! coracoid process of scapula +relationship: develops_from UBERON:0004753 ! scapulocoracoid + +[Term] +id: UBERON:0004744 +name: articular/anguloarticular +def: "." [http://en.wikipedia.org/wiki/Articular, https://github.com/obophenotype/uberon/issues/98] +subset: efo_slim +synonym: "angulaire" RELATED [AAO:0000028] +synonym: "angulare" RELATED [AAO:0000028] +synonym: "angulo-articular" EXACT [TAO:0000467] +synonym: "anguloarticular" EXACT [ZFA:0000467] +synonym: "anguloarticular - malleus" EXACT [VHOG:0000690] +synonym: "articular" BROAD [ZFA:0000467] +synonym: "dermarticulare" RELATED [AAO:0000028] +synonym: "goniale" RELATED [AAO:0000028] +synonym: "operculo angulaire" RELATED [AAO:0000028] +xref: AAO:0000028 +xref: EFO:0003530 +xref: http://en.wikipedia.org/wiki/Articular +xref: TAO:0000467 +xref: VHOG:0000690 +xref: ZFA:0000467 +is_a: UBERON:0002513 {source="ZFA"} ! endochondral bone +is_a: UBERON:0004768 ! bone of lower jaw +is_a: UBERON:0008907 {source="ZFA"} ! dermal bone +property_value: dc-contributor https://github.com/alex-dececchi +property_value: dc-contributor https://github.com/cmungall +relationship: develops_from UBERON:0011002 {source="ZFA"} ! articular cartilage element + +[Term] +id: UBERON:0004745 +name: parasphenoid +def: "A tooth- or denticle-covered plate which is attached to the sphenoid stem[Palaeos]." [http://palaeos.com/vertebrates/bones/braincase/sphenethmoid.html] +synonym: "keilbein" RELATED [AAO:0000385] +synonym: "os parasphenoidale" RELATED [AAO:0000385] +synonym: "os sphenoideum" RELATED [AAO:0000385] +synonym: "parabasale" RELATED [AAO:0000385] +xref: AAO:0000385 +xref: TAO:0000561 +xref: ZFA:0000561 +is_a: UBERON:0002514 ! intramembranous bone +is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:0012071 ! palate bone +relationship: part_of UBERON:0003111 {source="ZFA"} ! sphenoid region +relationship: part_of UBERON:0003112 {source="ZFA"} ! olfactory region + +[Term] +id: UBERON:0004746 +name: prootic bone +def: "Paired, endochondral bones forming the anterior, and lateral walls of the otic capsules." [AAO:0000514] +subset: efo_slim +synonym: "prootic" EXACT [AAO:0000514] +synonym: "prootics" RELATED PLURAL [TAO:0000575] +xref: AAO:0000514 +xref: EFO:0003542 +xref: TAO:0000575 +xref: ZFA:0000575 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011164 ! neurocranium bone +relationship: develops_from UBERON:0005410 ! cartilaginous otic capsule +relationship: part_of UBERON:0003110 ! otic region + +[Term] +id: UBERON:0004747 +name: supraoccipital bone +alt_id: UBERON:0005237 +def: "Endochondral bone that is located at the dorsal part of the occipital region of the cranium or the dorso-posterior part of the skull[TAP,modified]." [TAO:0000595] +subset: pheno_slim +subset: vertebrate_core +synonym: "acrinial@fr" EXACT [TAO:0000595] +synonym: "acrinioste@fr" EXACT [TAO:0000595] +synonym: "supraoccipital" EXACT [VHOG:0001150] +synonym: "supraoccipital@fr" EXACT [TAO:0000595] +xref: EMAPA:36618 +xref: http://www.snomedbrowser.com/Codes/Details/95947006 +xref: MA:0001474 +xref: TAO:0000595 +xref: VHOG:0001150 +xref: ZFA:0000595 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:0015015 ! supraoccipital endochondral element +intersection_of: UBERON:0015015 ! supraoccipital endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0011162 ! supraoccipital cartilage element + +[Term] +id: UBERON:0004748 +name: obsolete autopalatine +is_obsolete: true +consider: AAO:0000372 +consider: ZFA:0000620 + +[Term] +id: UBERON:0004749 +name: blastodisc +def: "A small, circular, white spot (approximately 2-3 mm across) on the surface of the yellow yolk of an egg that has been laid. The nucleus of the egg is in the germinal disc." [http://en.wikipedia.org/wiki/Germinal_disc] +synonym: "embryonic disc" RELATED [BTO:0000494] +synonym: "gastrodisk" RELATED [BTO:0000494] +synonym: "germ disc" RELATED [BTO:0000494] +synonym: "germinal disc" EXACT [http://en.wikipedia.org/wiki/Germinal_disc] +xref: AAO:0000043 +xref: BTO:0000494 +xref: BTO:0001504 +xref: Germinal:disc +xref: NCIT:C34150 +xref: TAO:0001175 +xref: ZFA:0001175 +is_a: UBERON:0002050 ! embryonic structure +relationship: existence_ends_during UBERON:0000108 ! blastula stage +relationship: existence_starts_during UBERON:0000106 ! zygote stage + +[Term] +id: UBERON:0004750 +name: blastoderm +def: "A layer of cells formed at one pole of macrolecithal eggs such as the yolky egg of birds. The yolk prevents the division from taking place through the egg, resulting in meroblastic cleavage during the many cleavage divisions. At the animal pole (containing less yolk than the vegetal pole), the zygote divides and subdivides, forming the blastoderm, which gradually spreads around the yolk and forms the embryo. The blastoderm is composed of two layers, the epiblast and the hypoblast, which enclose the fluid-filled blastocoel cavity." [http://en.wikipedia.org/wiki/Blastoderm] +synonym: "germinal membrane" RELATED [BTO:0000126] +synonym: "membrana germinativa" RELATED [BTO:0000126] +xref: AAO:0000042 +xref: BTO:0000126 +xref: http://en.wikipedia.org/wiki/Blastoderm +xref: MESH:A16.254.085.067 +xref: TAO:0001176 +xref: ZFA:0001176 +is_a: UBERON:0002050 ! embryonic structure +relationship: develops_from UBERON:0004749 ! blastodisc +relationship: existence_ends_during UBERON:0000109 ! gastrula stage +relationship: existence_starts_during UBERON:0000108 ! blastula stage +relationship: has_part UBERON:0000089 ! hypoblast (generic) +relationship: has_part UBERON:0002532 ! epiblast (generic) + +[Term] +id: UBERON:0004751 +name: hypohyal bone +synonym: "hypohyals" EXACT PLURAL [ZFA:0001381] +xref: AAO:0000958 +xref: TAO:0001381 +xref: ZFA:0001381 +is_a: UBERON:0002513 {source="TAO"} ! endochondral bone +is_a: UBERON:0011613 ! hypohyal element +relationship: develops_from UBERON:0011610 {source="TAO"} ! ceratohyal cartilage +relationship: develops_from UBERON:0011612 {source="TAO"} ! hypohyal cartilage +relationship: part_of UBERON:0010272 {source="AAO"} ! hyoid apparatus + +[Term] +id: UBERON:0004752 +name: palatoquadrate cartilage +def: "The dorsal component of the mandibular arch" [http://en.wikipedia.org/wiki/Palatoquadrate] +synonym: "dorsal mandibular cartilage" EXACT [ZFA:0001399] +synonym: "palatoquadrate" EXACT [AAO:0000379] +synonym: "pterygoquadrate" RELATED INCONSISTENT [ZFA:0001399] +synonym: "quadrate cartilage" EXACT [ZFA:0001399] +xref: AAO:0000379 +xref: http://en.wikipedia.org/wiki/Palatoquadrate +xref: TAO:0001399 +xref: ZFA:0001399 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0011004 {source="ZFA"} ! pharyngeal arch cartilage +is_a: UBERON:0013765 ! digestive system element +relationship: part_of UBERON:0003108 {source="AAO"} ! suspensorium +relationship: part_of UBERON:0011085 {source="ZFA"} ! palatoquadrate arch + +[Term] +id: UBERON:0004753 +name: scapulocoracoid +def: "Skeletal element that consists of the scapula and the coracoid[VSAO, modified]." [http://en.wikipedia.org/wiki/Scapulocoracoid, https://github.com/obophenotype/uberon/issues/125, https://github.com/obophenotype/uberon/issues/66, VSAO:0005002] +synonym: "coraco-scapular cartilage" NARROW [ZFA:0001455] +synonym: "scapulo-coracoid cartilage" NARROW [TAO:0001455] +synonym: "scapulocoracoid cartilage" NARROW [TAO:0001455] +synonym: "scapulocoracoideum" EXACT [VSAO:0005002] +xref: AAO:0000781 +xref: http://en.wikipedia.org/wiki/Scapulocoracoid +xref: TAO:0001455 +xref: VSAO:0005002 +xref: ZFA:0001455 +is_a: UBERON:0004765 ! skeletal element +property_value: dc-contributor https://github.com/alex-dececchi +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +relationship: part_of UBERON:0007831 {source="VSAO"} ! pectoral girdle skeleton + +[Term] +id: UBERON:0004754 +name: foramen ovale of heart +def: "An anatomical space in the fetal heart that allows blood to enter the left atrium from the right atrium." [http://en.wikipedia.org/wiki/Foramen_ovale_(heart)] +comment: It is one of two fetal cardiac shunts, the other being the ductus arteriosus (which allows blood that still escapes to the right ventricle to bypass the pulmonary circulation). Another similar adaptation in the fetus is the ductus venosus[WP] +synonym: "Bottalo's foramen" EXACT [FMA:86043] +synonym: "falx septi" EXACT [http://en.wikipedia.org/wiki/Foramen_ovale_(heart)] +synonym: "foramen ovale" NARROW [galen:ForamenOvale, MA:0001873] +synonym: "foramen ovale cordis" EXACT [galen:ForamenOvaleCordis] +synonym: "ostium secundum of Born" EXACT [http://en.wikipedia.org/wiki/Foramen_ovale_(heart)] +xref: EHDAA2:0004142 +xref: EMAPA:18244 +xref: FMA:86043 +xref: galen:ForamenOvaleCordis +xref: http://en.wikipedia.org/wiki/Foramen_ovale_(heart) +xref: http://linkedlifedata.com/resource/umls/id/C0016521 +xref: http://www.snomedbrowser.com/Codes/Details/362015004 +xref: MA:0001873 +xref: NCIT:C34241 +xref: UMLS:C0016521 {source="ncithesaurus:Oval_Foramen"} +is_a: UBERON:0000464 ! anatomical space +disjoint_from: UBERON:0006678 ! foramen secundum +relationship: part_of UBERON:0000922 ! embryo +relationship: part_of UBERON:0002085 ! interatrial septum + +[Term] +id: UBERON:0004755 +name: skeletal tissue +def: "A specialized form of connective tissue in which the extracellular matrix is firm, providing the tissue with resilience, and/or mineralized and that functions in mechanical and structural support.[VSAO]" [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, https://github.com/obophenotype/uberon/issues/134, PSPUB:0000170, VSAO:0000015] +comment: Four classes of mineralized tissues are found in vertebrates: bone, cartilage, dentine, and enamel. We think of cartilage and bone as skeletal tissues and of enamel and dentine as dental tissues, but enamel and dentine arose evolutionarily together with bone as skeletal tissues in the dermal skeleton (exoskeleton) of early vertebrates. Scales and teeth of sharks are examples of dermal skeletal elements that are still composed of the three ancient components-enamel, dentine, and bone. Cartilage, on the other hand, provided the basis for the second vertebrate skeletal system, the endoskeleton (Smith and Hall, 1990; Hall, 1998a,b). some invertebrate skeletal tissues have surprisingly bone-like features. Examples include chondrocytes interconnected by cell processes in cephalopod cartilages (Cole and Hall, 2004a,b), and the calcium phosphate layer in the shells of brachiopods (Rodland et al., 2003). However, neither bone nor mineralized cartilage have been found in invertebrates. Editors notes: TODO - develops_from +xref: EMAPA:37744 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/309311006 +xref: MA:0003047 +xref: VSAO:0000015 +xref: XAO:0004038 +xref: ZFA:0005619 +is_a: UBERON:0002384 {source="VSAO"} ! connective tissue +relationship: part_of UBERON:0004765 ! skeletal element + +[Term] +id: UBERON:0004756 +name: dermal skeletal element +def: "dermis-derived entity that is made of skeletal tissue." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/206] +synonym: "dermal element" EXACT [VSAO:curator] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004765 ! skeletal element +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0004765 ! skeletal element +intersection_of: develops_from UBERON:0002067 ! dermis +intersection_of: has_part UBERON:0004755 ! skeletal tissue +relationship: develops_from UBERON:0002067 ! dermis +relationship: has_part UBERON:0004755 ! skeletal tissue + +[Term] +id: UBERON:0004757 +name: rectal salt gland +def: "An evagination of the terminal portion of the intestine that is capable of secreting high concentrations of excess sodium chloride." [http://www.briancoad.com/dictionary/complete%20dictionary.htm, UBERON:cjm] +subset: organ_slim +synonym: "digitiform gland" BROAD [http://www.briancoad.com/dictionary/complete%20dictionary.htm] +synonym: "glandula rectalis" BROAD LATIN [http://www.briancoad.com/dictionary/complete%20dictionary.htm] +synonym: "rectal gland" BROAD [] +xref: BTO:0001157 +xref: http://www.snomedbrowser.com/Codes/Details/80455007 +is_a: UBERON:0003408 ! gland of digestive tract +is_a: UBERON:0004758 ! salt gland +relationship: part_of UBERON:0001052 ! rectum +relationship: present_in_taxon NCBITaxon:118072 +relationship: present_in_taxon NCBITaxon:119203 + +[Term] +id: UBERON:0004758 +name: salt gland +def: "An organ for excreting excess salts. It is found in elasmobranchs, seabirds, and some reptiles.[WP]." [http://en.wikipedia.org/wiki/Salt_gland] +subset: functional_classification +subset: organ_slim +xref: BTO:0001204 +xref: GAID:1235 +xref: MESH:D012491 +xref: Salt:gland +is_a: UBERON:0002530 ! gland + +[Term] +id: UBERON:0004759 +name: cranial salt gland +def: "A salt gland located in the cranium or head region." [OBOL:automatic] +subset: organ_slim +is_a: UBERON:0004758 ! salt gland +intersection_of: UBERON:0004758 ! salt gland +intersection_of: part_of UBERON:0000033 ! head +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0004760 +name: gland of anal canal +def: "A gland that is part of an anal canal [Automatically generated definition]." [http://en.wikipedia.org/wiki/Anal_gland, OBOL:automatic] +subset: organ_slim +synonym: "anal gland" RELATED [] +synonym: "anal sac" RELATED SENSU [http://en.wikipedia.org/wiki/Anal_gland] +synonym: "gland of anal canal" EXACT [OBOL:automatic] +synonym: "gland of anus" RELATED [] +synonym: "rectal gland" RELATED [] +xref: Anal:gland +xref: EMAPA:27221 +xref: EMAPA:27233 +xref: EMAPA:27543 +xref: FMA:15720 +xref: FMA:15724 +xref: http://linkedlifedata.com/resource/umls/id/C0162322 +xref: http://www.snomedbrowser.com/Codes/Details/245448005 +xref: NCIT:C32068 +xref: UMLS:C0162322 {source="ncithesaurus:Anal_Gland"} +is_a: UBERON:0003408 ! gland of digestive tract +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0000159 ! anal canal +relationship: part_of UBERON:0000159 ! anal canal + +[Term] +id: UBERON:0004761 +name: cartilaginous neurocranium +def: "The primitive cartilagionous skeletal structure of the fetal skull that grows to envelop the rapidly growing embyonic brain. In humans, the chondrocranium begins forming at 28 days from mesenchymal condensations and is fully formed between week 7 and 9 of fetal development. While the majority of the chondrocranium is succeeded by the bony skull in most higher vertebrates, some components do persist into adulthood.[1] In Cartilagious fishes and Agnathans, the chondrocranium persist throughout life.[2] Embryologically, the chondrocranium represent the basal cranial structure, and lay the base for the formation of the endocranium in higher vertebrates[WP]." [http://en.wikipedia.org/wiki/Chondrocranium] +synonym: "cartilaginous chondocranium" EXACT [] +synonym: "cartilaginous skull" RELATED [] +synonym: "cartiligionous skeletal structure of skull" EXACT [] +synonym: "chondocranium" RELATED [http://en.wikipedia.org/wiki/Chondrocranium] +synonym: "embryonic chondocranium" RELATED [] +synonym: "neurocranium" RELATED SENSU [] +xref: AAO:0000094 +xref: AAO:0010153 +xref: EHDAA:6031 +xref: FMA:76621 +xref: http://en.wikipedia.org/wiki/Chondrocranium +xref: http://linkedlifedata.com/resource/umls/id/C1516496 +xref: http://www.snomedbrowser.com/Codes/Details/155540009 +xref: NCIT:C34121 +xref: UMLS:C1516496 {source="ncithesaurus:Chondrocranium"} +xref: XAO:0003059 +is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system +relationship: develops_from UBERON:0009617 {source="PMC1571569"} ! head paraxial mesoderm +relationship: has_part UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0004763 +name: endochondral bone tissue +def: "Replacement bone tissue that forms within cartilage[VSAO, modified]." [GO:0001958, http://en.wikipedia.org/wiki/Endochondral_ossification, VSAO:0000145] +subset: uberon_slim +subset: vertebrate_core +xref: EMAPA:35304 +xref: Endochondral:ossification +xref: MA:0002836 +is_a: UBERON:0002481 ! bone tissue +disjoint_from: UBERON:0004764 ! intramembranous bone tissue +relationship: developmentally_replaces UBERON:0002418 ! cartilage tissue +relationship: part_of UBERON:0002513 ! endochondral bone + +[Term] +id: UBERON:0004764 +name: intramembranous bone tissue +def: "Bone tissue that forms directly within mesenchyme, and does not replace other tissues[TAO]. Intramembranous ossification is the formation of bone in which osteoblasts secrete a collagen-proteoglycan matrix that binds calcium salts and becomes calcified[GO]. Intramembranous ossification is the way flat bones and the shell of a turtle are formed[GO]. Unlike endochondral ossification, cartilage is not present during intramembranous ossification[WP]." [GO:0001957, http://en.wikipedia.org/wiki/Intramembranous_ossification] +xref: Intramembranous:ossification +xref: MA:0002837 +is_a: UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0003104 ! mesenchyme +relationship: part_of UBERON:0002514 ! intramembranous bone + +[Term] +id: UBERON:0004765 +name: skeletal element +def: "Organ consisting of skeletal tissue. Encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles." [https://orcid.org/0000-0002-6601-2165] +subset: organ_slim +subset: uberon_slim +xref: AAO:0011129 +xref: galen:SkeletalStructure +xref: TAO:0001890 +xref: VSAO:0000128 +xref: XAO:0004012 +xref: ZFA:0005494 +is_a: UBERON:0000062 ! organ +relationship: part_of UBERON:0001434 {source="VSAO"} ! skeletal system + +[Term] +id: UBERON:0004766 +name: cranial bone +def: "A bone that is part of a cranium." [UBERON:automatic] +synonym: "cranium bone" EXACT [UBERON:automatic] +xref: http://www.snomedbrowser.com/Codes/Details/181792001 +is_a: UBERON:0003457 ! head bone +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0003128 ! cranium +relationship: part_of UBERON:0003128 ! cranium + +[Term] +id: UBERON:0004767 +name: vomerine tooth +def: "A tooth that is on the vomer." [http://www.encyclo.co.uk/define/Vomerine%20teeth] +xref: AAO:0000635 +xref: TAO:0001631 +is_a: UBERON:0012070 ! palatal tooth +intersection_of: UBERON:0001091 ! calcareous tooth +intersection_of: attaches_to UBERON:0002396 ! vomer +relationship: attaches_to UBERON:0002396 ! vomer +relationship: part_of UBERON:0017615 ! vomerine dentition + +[Term] +id: UBERON:0004768 +name: bone of lower jaw +def: "Any bone that is part of the lower jaw skeleton. This includes (when present): the dentary/mandible, the articular, the splenial, the suprangular" [https://orcid.org/0000-0002-6601-2165] +subset: grouping_class +synonym: "lower jaw bone" EXACT [] +is_a: UBERON:0012360 ! bone of jaw +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0001710 ! lower jaw region +relationship: part_of UBERON:0003278 ! skeleton of lower jaw + +[Term] +id: UBERON:0004769 +name: diaphysis +def: "Subdivision of long bone which forms the part of the bone between the two epiphyses, excluding the metaphyses[FMA,modified]." [FMA:24013, http://en.wikipedia.org/wiki/Diaphysis] +subset: pheno_slim +subset: uberon_slim +synonym: "body of long bone" EXACT [] +synonym: "long bone diaphysis" EXACT [] +synonym: "shaft of long bone" EXACT [] +xref: EMAPA:35504 +xref: FMA:24013 +xref: GAID:189 +xref: http://en.wikipedia.org/wiki/Diaphysis +xref: http://www.snomedbrowser.com/Codes/Details/361729006 +xref: MESH:D018483 +is_a: UBERON:0005055 ! zone of long bone + +[Term] +id: UBERON:0004770 +name: articular system +def: "Anatomical system that consists of all the joints of the body." [VSAO:0000181] +synonym: "joint system" EXACT [FMA:23878] +synonym: "set of all joints" RELATED [] +synonym: "set of all joints of body" EXACT [FMA:23878] +synonym: "set of joints of body" RELATED [FMA:23878] +xref: EMAPA:35150 +xref: FMA:23878 +xref: http://www.snomedbrowser.com/Codes/Details/361827000 +xref: MA:0003007 +xref: VSAO:0000181 +is_a: UBERON:0034925 ! anatomical collection +intersection_of: UBERON:0034925 ! anatomical collection +intersection_of: has_member UBERON:0000982 ! skeletal joint +relationship: existence_ends_during UBERON:0000066 ! fully formed stage +relationship: has_member UBERON:0000982 ! skeletal joint +relationship: part_of UBERON:0001434 {source="FMA"} ! skeletal system + +[Term] +id: UBERON:0004771 +name: posterior nasal aperture +def: "Opening/conduit between the nasal cavity and the nasopharynx[AAO] The choanae are separated by the vomer[WP]." [AAO:0000093, http://en.wikipedia.org/wiki/Posterior_nasal_apertures] +subset: pheno_slim +synonym: "choana" BROAD [http://en.wikipedia.org/wiki/Choane, XAO:0000277] +synonym: "choanae" RELATED PLURAL [VHOG:0000545] +synonym: "internal naris" BROAD [MA:0001323] +synonym: "nasopharyngeal naris" RELATED [] +synonym: "posterior choana" RELATED [HP:0004496] +synonym: "posterior naris" RELATED [VHOG:0000545] +synonym: "posterior nasal apperture" EXACT [XAO:0000277] +xref: AAO:0000093 +xref: EHDAA2:0000242 +xref: EHDAA:7842 +xref: EMAPA:17849 +xref: FMA:53143 +xref: http://en.wikipedia.org/wiki/Posterior_nasal_apertures +xref: http://www.snomedbrowser.com/Codes/Details/244507001 +xref: MA:0001323 +xref: VHOG:0000545 +xref: XAO:0000277 +is_a: UBERON:0010425 ! internal naris +is_a: UBERON:0036253 ! orifice of skull +intersection_of: UBERON:0010425 ! internal naris +intersection_of: connects UBERON:0001707 ! nasal cavity +intersection_of: connects UBERON:0001728 ! nasopharynx +relationship: connects UBERON:0001728 ! nasopharynx +relationship: part_of UBERON:0003128 ! cranium + +[Term] +id: UBERON:0004772 +name: eyelid tarsus +def: "The tarsi (tarsal plates) are two comparatively thick, elongated plates of dense connective tissue, about 2.5 cm. in length; one is found in each eyelid, and contributes to its form and support. They directly abut the lid margins." [http://en.wikipedia.org/wiki/Tarsus_(eyelids)] +subset: organ_slim +synonym: "eyelid tarsi" RELATED PLURAL [] +synonym: "tarsal plate" EXACT [FMA:59086] +synonym: "tarsal plate of eyelid" EXACT [FMA:59086] +synonym: "tarsi" RELATED PLURAL [] +synonym: "tarsus palpebralis" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/16496288] +xref: FMA:59086 +xref: http://linkedlifedata.com/resource/umls/id/C0459586 +xref: http://www.snomedbrowser.com/Codes/Details/362529005 +xref: MA:0000270 +xref: NCIT:C33736 +xref: Tarsus:(eyelids) +xref: UMLS:C0459586 {source="ncithesaurus:Tarsal_Plate"} +is_a: UBERON:0000094 {source="FMA"} ! membrane organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0003581 {source="cjm"} ! eyelid connective tissue + +[Term] +id: UBERON:0004773 +name: superior eyelid tarsus +def: "An eyelid tarsus that is part of a upper eyelid [Automatically generated definition]." [OBOL:automatic] +synonym: "superior tarsal plate" EXACT [FMA:59087] +synonym: "superior tarsus" EXACT [FMA:59087] +synonym: "superior tarsus of eyelid" EXACT [] +synonym: "tarsal plate of upper eyelid" EXACT [FMA:59087] +synonym: "tarsus of upper eyelid" EXACT [] +synonym: "tarsus superior" EXACT LATIN [FMA:59087, FMA:TA] +xref: EMAPA:37607 {source="MA:th"} +xref: FMA:59087 +xref: http://www.snomedbrowser.com/Codes/Details/368773004 +xref: MA:0001260 +xref: Tarsus:(eyelids) +is_a: UBERON:0004772 ! eyelid tarsus +intersection_of: UBERON:0004772 ! eyelid tarsus +intersection_of: part_of UBERON:0001712 ! upper eyelid +relationship: part_of UBERON:0001712 ! upper eyelid + +[Term] +id: UBERON:0004774 +name: inferior eyelid tarsus +def: "An eyelid tarsus that is part of a lower eyelid [Automatically generated definition]." [OBOL:automatic] +synonym: "inferior tarsal plate" EXACT [FMA:59088] +synonym: "inferior tarsus" EXACT [FMA:59088] +synonym: "inferior tarsus of eyelid" EXACT [] +synonym: "tarsal plate of lower eyelid" EXACT [FMA:59088] +synonym: "tarsus inferior" EXACT LATIN [FMA:59088, FMA:TA] +synonym: "tarsus of lower eyelid" EXACT [] +xref: EMAPA:37606 {source="MA:th"} +xref: FMA:59088 +xref: http://www.snomedbrowser.com/Codes/Details/368774005 +xref: MA:0001257 +is_a: UBERON:0004772 ! eyelid tarsus +intersection_of: UBERON:0004772 ! eyelid tarsus +intersection_of: part_of UBERON:0001713 ! lower eyelid +relationship: part_of UBERON:0001713 ! lower eyelid + +[Term] +id: UBERON:0004775 +name: outer renal medulla vasa recta +def: "A vasa recta that is part of a outer medulla of kidney [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "kidney outer medulla vasa recta" EXACT [MP:0011330] +synonym: "kidney outer renal medulla vasa recta" EXACT [MP:0011330] +synonym: "outer medulla of kidney vasa recta" EXACT [OBOL:automatic] +synonym: "outer zone of medulla of kidney vasa recta" EXACT [OBOL:automatic] +synonym: "outer zone of renal medulla vasa recta" EXACT [OBOL:automatic] +synonym: "vasa recta of outer medulla of kidney" EXACT [OBOL:automatic] +synonym: "vasa recta of outer renal medulla" EXACT [OBOL:automatic] +synonym: "vasa recta of outer zone of medulla of kidney" EXACT [OBOL:automatic] +synonym: "vasa recta of outer zone of renal medulla" EXACT [OBOL:automatic] +xref: EMAPA:36560 +xref: MA:0002597 +is_a: UBERON:0004726 ! vasa recta +is_a: UBERON:0013126 ! vein of abdomen +is_a: UBERON:0014401 ! renal venous blood vessel +intersection_of: UBERON:0004726 ! vasa recta +intersection_of: part_of UBERON:0001293 ! outer medulla of kidney +relationship: contributes_to_morphology_of UBERON:0001293 ! outer medulla of kidney +relationship: part_of UBERON:0001293 ! outer medulla of kidney + +[Term] +id: UBERON:0004776 +name: inner renal medulla vasa recta +def: "A vasa recta that is part of a inner medulla of kidney [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "inner medulla of kidney vasa recta" EXACT [OBOL:automatic] +synonym: "inner zone of medulla of kidney vasa recta" EXACT [OBOL:automatic] +synonym: "inner zone of renal medulla vasa recta" EXACT [OBOL:automatic] +synonym: "set of inner region of renal pyramids vasa recta" EXACT [OBOL:automatic] +synonym: "vasa recta of inner medulla of kidney" EXACT [OBOL:automatic] +synonym: "vasa recta of inner renal medulla" EXACT [OBOL:automatic] +synonym: "vasa recta of inner zone of medulla of kidney" EXACT [OBOL:automatic] +synonym: "vasa recta of inner zone of renal medulla" EXACT [OBOL:automatic] +synonym: "vasa recta of set of inner region of renal pyramids" EXACT [OBOL:automatic] +xref: EMAPA:36559 +xref: MA:0002596 +is_a: UBERON:0004726 ! vasa recta +is_a: UBERON:0013126 ! vein of abdomen +is_a: UBERON:0014401 ! renal venous blood vessel +intersection_of: UBERON:0004726 ! vasa recta +intersection_of: part_of UBERON:0001294 ! inner medulla of kidney +relationship: contributes_to_morphology_of UBERON:0001294 ! inner medulla of kidney +relationship: part_of UBERON:0001294 ! inner medulla of kidney + +[Term] +id: UBERON:0004777 +name: respiratory system submucosa +def: "A submucosa that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +synonym: "apparatus respiratorius submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "submucosa of respiratory system" EXACT [OBOL:automatic] +xref: EMAPA:37578 {source="MA:th"} +xref: MA:0001822 +is_a: UBERON:0000009 ! submucosa +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0003570 ! respiratory system connective tissue + +[Term] +id: UBERON:0004778 +name: larynx submucosa +def: "A submucosa that is part of a larynx [Automatically generated definition]." [OBOL:automatic] +synonym: "laryngeal submucosa" RELATED [EMAPA:35474] +synonym: "submucosa of larynx" EXACT [OBOL:automatic] +xref: EMAPA:35474 +xref: FMA:321584 +xref: http://www.snomedbrowser.com/Codes/Details/361941005 +xref: MA:0002728 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004777 ! respiratory system submucosa +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001737 ! larynx +relationship: part_of UBERON:0001737 ! larynx + +[Term] +id: UBERON:0004779 +name: respiratory system lamina propria +def: "A lamina propria that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +synonym: "apparatus respiratorius lamina propria" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius lamina propria mucosa" EXACT [OBOL:automatic] +synonym: "lamina propria mucosa of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "lamina propria mucosa of respiratory system" EXACT [OBOL:automatic] +synonym: "lamina propria of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "lamina propria of respiratory system" EXACT [OBOL:automatic] +synonym: "respiratory system lamina propria mucosa" EXACT [OBOL:automatic] +xref: EMAPA:37576 {source="MA:th"} +xref: MA:0001821 +is_a: UBERON:0000030 ! lamina propria +intersection_of: UBERON:0000030 ! lamina propria +intersection_of: part_of UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0003570 ! respiratory system connective tissue +relationship: part_of UBERON:0004785 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! respiratory system mucosa + +[Term] +id: UBERON:0004780 +name: gastrointestinal system lamina propria +def: "A lamina propria that is part of a gastrointestinal system." [OBOL:automatic] +xref: http://linkedlifedata.com/resource/umls/id/C1708197 +xref: MA:0001899 +xref: NCIT:C49299 +xref: UMLS:C1708197 {source="ncithesaurus:Gastrointestinal_Tract_Lamina_Propria"} +is_a: UBERON:0000030 ! lamina propria +intersection_of: UBERON:0000030 ! lamina propria +intersection_of: part_of UBERON:0005409 ! alimentary part of gastrointestinal system +relationship: part_of UBERON:0004786 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! gastrointestinal system mucosa + +[Term] +id: UBERON:0004781 +name: gall bladder lamina propria +def: "A lamina propria that is part of a gallbladder [Automatically generated definition]." [OBOL:automatic] +synonym: "biliary lamina propria" RELATED [MA:0001633] +synonym: "gall bladder lamina propria mucosa" EXACT [OBOL:automatic] +synonym: "gallbladder lamina propria" EXACT [OBOL:automatic] +synonym: "gallbladder lamina propria mucosa" EXACT [OBOL:automatic] +synonym: "lamina propria mucosa of gall bladder" EXACT [OBOL:automatic] +synonym: "lamina propria mucosa of gallbladder" EXACT [OBOL:automatic] +synonym: "lamina propria of gall bladder" EXACT [OBOL:automatic] +synonym: "lamina propria of gallbladder" EXACT [OBOL:automatic] +xref: EMAPA:35371 +xref: FMA:278594 +xref: http://linkedlifedata.com/resource/umls/id/C1708175 +xref: MA:0001633 +xref: NCIT:C49228 +xref: UMLS:C1708175 {source="ncithesaurus:Gallbladder_Lamina_Propria"} +is_a: UBERON:0000030 ! lamina propria +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000030 ! lamina propria +intersection_of: part_of UBERON:0002110 ! gall bladder +relationship: part_of UBERON:0005033 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! mucosa of gallbladder + +[Term] +id: UBERON:0004782 +name: gastrointestinal system serosa +def: "A serous membrane that is part of a digestive system [Automatically generated definition]." [OBOL:automatic] +synonym: "digestive system serosa" EXACT [OBOL:automatic] +synonym: "digestive system serous membrane" EXACT [OBOL:automatic] +synonym: "gastrointestinal system serous membrane" EXACT [OBOL:automatic] +synonym: "serosa of digestive system" EXACT [OBOL:automatic] +synonym: "serosa of gastrointestinal system" EXACT [OBOL:automatic] +synonym: "serous membrane of digestive system" EXACT [OBOL:automatic] +synonym: "serous membrane of gastrointestinal system" EXACT [OBOL:automatic] +xref: EMAPA:37592 {source="MA:th"} +xref: MA:0001522 +is_a: UBERON:0000042 ! serous membrane +intersection_of: UBERON:0000042 ! serous membrane +intersection_of: part_of UBERON:0005409 ! alimentary part of gastrointestinal system +relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system + +[Term] +id: UBERON:0004783 +name: gall bladder serosa +def: "A serous membrane that is part of a gallbladder [Automatically generated definition]." [OBOL:automatic] +synonym: "biliary serosa" RELATED [MA:0001634] +synonym: "gall bladder serous membrane" EXACT [OBOL:automatic] +synonym: "gallbladder serosa" EXACT [OBOL:automatic] +synonym: "gallbladder serous membrane" EXACT [OBOL:automatic] +synonym: "serosa of gall bladder" EXACT [OBOL:automatic] +synonym: "serosa of gallbladder" EXACT [OBOL:automatic] +synonym: "serous coat of gallbladder" EXACT [FMA:14659] +synonym: "serous membrane of gall bladder" EXACT [OBOL:automatic] +synonym: "serous membrane of gallbladder" EXACT [OBOL:automatic] +synonym: "tunica serosa (vesica biliaris)" EXACT [FMA:14659] +synonym: "tunica serosa vesicae biliaris" EXACT LATIN [FMA:14659, FMA:TA] +xref: EMAPA:35372 +xref: FMA:14659 +xref: http://www.snomedbrowser.com/Codes/Details/362197006 +xref: MA:0001634 +is_a: UBERON:0000042 ! serous membrane +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +intersection_of: UBERON:0000042 ! serous membrane +intersection_of: part_of UBERON:0002110 ! gall bladder +relationship: part_of UBERON:0002110 ! gall bladder + +[Term] +id: UBERON:0004784 +name: heart ventricle wall +def: "An anatomical wall that is part of a cardiac ventricle [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "anatomical wall of cardiac ventricle" EXACT [OBOL:automatic] +synonym: "anatomical wall of heart ventricle" EXACT [OBOL:automatic] +synonym: "anatomical wall of lower chamber of heart" EXACT [OBOL:automatic] +synonym: "anatomical wall of ventricle of heart" EXACT [OBOL:automatic] +synonym: "cardiac ventricle anatomical wall" EXACT [OBOL:automatic] +synonym: "cardiac ventricle wall" EXACT [OBOL:automatic] +synonym: "heart ventricle anatomical wall" EXACT [OBOL:automatic] +synonym: "lower chamber of heart anatomical wall" EXACT [OBOL:automatic] +synonym: "lower chamber of heart wall" EXACT [OBOL:automatic] +synonym: "ventricle of heart anatomical wall" EXACT [OBOL:automatic] +synonym: "ventricle of heart wall" EXACT [OBOL:automatic] +synonym: "ventricular wall" EXACT [FMA:13884] +synonym: "wall of cardiac ventricle" EXACT [OBOL:automatic] +synonym: "wall of heart ventricle" EXACT [OBOL:automatic] +synonym: "wall of lower chamber of heart" EXACT [OBOL:automatic] +synonym: "wall of ventricle" RELATED [MA:0002791] +synonym: "wall of ventricle of heart" EXACT [OBOL:automatic] +xref: FMA:13884 +xref: MA:0002791 +xref: NCIT:C119295 +is_a: UBERON:0037144 ! wall of heart +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0002082 ! cardiac ventricle +relationship: part_of UBERON:0002082 ! cardiac ventricle + +[Term] +id: UBERON:0004785 +name: respiratory system mucosa +def: "the mucous membrane lining the respiratory tract" [MESH:A04.760, MGI:cwg, MP:0002277] +subset: pheno_slim +synonym: "apparatus respiratorius mucosa" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius mucosa of organ" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius mucous membrane" EXACT [OBOL:automatic] +synonym: "laryngeal mucous membrane" RELATED [EMAPA:18334] +synonym: "mucosa of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "mucosa of organ of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "mucosa of organ of respiratory system" EXACT [OBOL:automatic] +synonym: "mucosa of respiratory system" EXACT [OBOL:automatic] +synonym: "mucous membrane of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "mucous membrane of respiratory system" EXACT [OBOL:automatic] +synonym: "respiratory mucosa" RELATED [BTO:0000973] +synonym: "respiratory system mucosa of organ" EXACT [OBOL:automatic] +synonym: "respiratory system mucous membrane" EXACT [OBOL:automatic] +synonym: "respiratory tract mucosa" RELATED [] +xref: BTO:0000973 +xref: EMAPA:18334 +xref: EMAPA:37577 {source="MA:th"} +xref: FMA:302092 +xref: GAID:304 +xref: MA:0001827 +xref: MESH:D020545 +is_a: UBERON:0000344 ! mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0004786 +name: gastrointestinal system mucosa +def: "A mucosa that is part of a gastrointestinal system." [OBOL:automatic] +comment: The gut mucosa of amphioxus has insulin-secreting cells. http://www.ncbi.nlm.nih.gov/pubmed/16417468 +synonym: "digestive tract mucosa" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "gut mucosa" EXACT [BTO:0000546] +synonym: "gut mucuous membrane" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "mucosa of gut" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: BTO:0000546 +xref: BTO:0005568 +xref: EMAPA:36591 +xref: http://www.snomedbrowser.com/Codes/Details/410433007 +xref: MA:0001521 +is_a: UBERON:0000344 ! mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0005409 ! alimentary part of gastrointestinal system +relationship: adjacent_to UBERON:0006909 {source="BTO-modified"} ! lumen of digestive tract +relationship: part_of UBERON:0001555 ! digestive tract +relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system + +[Term] +id: UBERON:0004787 +name: urethra urothelium +def: "An urothelium that is part of a urethra [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "urethra uroepithelium" EXACT [OBOL:automatic] +synonym: "uroepithelium of urethra" EXACT [OBOL:automatic] +synonym: "urothelium of urethra" EXACT [OBOL:automatic] +xref: EMAPA:35896 +xref: http://linkedlifedata.com/resource/umls/id/C1710585 +xref: MA:0001687 +xref: NCIT:C49310 +xref: UMLS:C1710585 {source="ncithesaurus:Urethra_Transitional_Cell_Epithelium"} +is_a: UBERON:0000365 ! urothelium +is_a: UBERON:0002325 ! epithelium of urethra +intersection_of: UBERON:0000365 ! urothelium +intersection_of: part_of UBERON:0000057 ! urethra +relationship: contributes_to_morphology_of UBERON:0000057 ! urethra + +[Term] +id: UBERON:0004788 +name: kidney pelvis urothelium +def: "the epithelial lining of the luminal space of the kidney pelvis" [MGI:csmith, MP:0011336] +subset: pheno_slim +synonym: "kidney pelvis transitional epithelium" EXACT [OBOL:automatic] +synonym: "kidney pelvis uroepithelium" EXACT [OBOL:automatic] +synonym: "pelvic urothelium" RELATED [EMAPA:28077] +synonym: "pelvis of ureter uroepithelium" EXACT [OBOL:automatic] +synonym: "pelvis of ureter urothelium" EXACT [OBOL:automatic] +synonym: "renal pelvis transitional epithelium" EXACT [OBOL:automatic] +synonym: "renal pelvis uroepithelium" EXACT [OBOL:automatic] +synonym: "renal pelvis urothelium" EXACT [OBOL:automatic] +synonym: "transitional epithelium of kidney pelvis" EXACT [OBOL:automatic] +synonym: "transitional epithelium of renal pelvis" EXACT [FMA:263264] +synonym: "uroepithelium of kidney pelvis" EXACT [OBOL:automatic] +synonym: "uroepithelium of pelvis of ureter" EXACT [OBOL:automatic] +synonym: "uroepithelium of renal pelvis" EXACT [OBOL:automatic] +synonym: "urothelium of kidney pelvis" EXACT [OBOL:automatic] +synonym: "urothelium of pelvis of ureter" EXACT [OBOL:automatic] +synonym: "urothelium of renal pelvis" EXACT [OBOL:automatic] +xref: EMAPA:28077 +xref: FMA:263264 +xref: http://linkedlifedata.com/resource/umls/id/C1709899 +xref: MA:0002632 +xref: NCIT:C54556 +xref: UMLS:C1709899 {source="ncithesaurus:Renal_Pelvis_Urothelium"} +is_a: UBERON:0000365 ! urothelium +is_a: UBERON:0004819 ! kidney epithelium +intersection_of: UBERON:0000365 ! urothelium +intersection_of: part_of UBERON:0001224 ! renal pelvis +relationship: contributes_to_morphology_of UBERON:0001224 ! renal pelvis +relationship: part_of UBERON:0001224 ! renal pelvis + +[Term] +id: UBERON:0004789 +name: larynx mucous gland +def: "A mucous gland that is part of a larynx [Automatically generated definition]." [OBOL:automatic] +synonym: "mucous gland of larynx" EXACT [OBOL:automatic] +xref: EMAPA:37631 {source="MA:th"} +xref: MA:0001767 +is_a: UBERON:0000414 ! mucous gland +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0036225 ! respiratory system gland +intersection_of: UBERON:0000414 ! mucous gland +intersection_of: part_of UBERON:0001737 ! larynx +relationship: part_of UBERON:0001824 ! mucosa of larynx + +[Term] +id: UBERON:0004790 +name: skin mucous gland +def: "A mucous gland that is part of the skin." [http://orcid.org/0000-0002-6601-2165] +subset: organ_slim +synonym: "mucous gland of entire skin" EXACT [OBOL:automatic] +synonym: "mucous gland of skin of body" EXACT [OBOL:automatic] +synonym: "skin mucus gland" EXACT [OBOL:automatic] +synonym: "skin of body mucous gland" EXACT [OBOL:automatic] +xref: EMAPA:35775 +xref: MA:0000148 +is_a: UBERON:0000414 ! mucous gland +is_a: UBERON:0007771 ! epidermis gland +is_a: UBERON:0019319 ! exocrine gland of integumental system +intersection_of: UBERON:0000414 ! mucous gland +intersection_of: part_of UBERON:0002097 ! skin of body + +[Term] +id: UBERON:0004791 +name: thymus trabecula +def: "the thymic connective tissue which extends into the parenchyma" [ISBN:0-397-51047-0, MGI:cwg, MP:0002370] +subset: pheno_slim +synonym: "thymic trabecula" EXACT [OBOL:automatic] +synonym: "thymus gland trabecula" EXACT [OBOL:automatic] +synonym: "trabecula of thymus" EXACT [OBOL:automatic] +synonym: "trabecula of thymus gland" EXACT [OBOL:automatic] +xref: http://linkedlifedata.com/resource/umls/id/C1515431 +xref: MA:0002674 +xref: NCIT:C33773 +xref: UMLS:C1515431 {source="ncithesaurus:Thymic_Trabecula"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0000440 ! trabecula +intersection_of: UBERON:0000440 ! trabecula +intersection_of: part_of UBERON:0002370 ! thymus +relationship: contributes_to_morphology_of UBERON:0002370 ! thymus +relationship: part_of UBERON:0002370 {source="MA"} ! thymus + +[Term] +id: UBERON:0004792 +name: secretion of endocrine pancreas +def: "A secretion that is part of a endocrine pancreas [Automatically generated definition]." [OBOL:automatic] +synonym: "endocrine pancreas secretion" EXACT [OBOL:automatic] +synonym: "pancreatic endocrine secretion" EXACT [ncithesaurus:Pancreatic_Endocrine_Secretion] +synonym: "pars endocrina pancreatis secretion" EXACT [OBOL:automatic] +synonym: "secretion of pars endocrina pancreatis" EXACT [OBOL:automatic] +xref: http://linkedlifedata.com/resource/umls/id/C1518866 +xref: MA:0002517 +xref: NCIT:C33255 +xref: UMLS:C1518866 {source="ncithesaurus:Pancreatic_Endocrine_Secretion"} +is_a: UBERON:0004795 ! pancreas secretion +intersection_of: UBERON:0000456 ! secretion of exocrine gland +intersection_of: part_of UBERON:0000016 ! endocrine pancreas +relationship: part_of UBERON:0000016 ! endocrine pancreas + +[Term] +id: UBERON:0004793 +name: secretion of exocrine pancreas +def: "A secretion that is part of a exocrine pancreas [Automatically generated definition]." [OBOL:automatic] +synonym: "exocrine pancreas secretion" EXACT [OBOL:automatic] +synonym: "pancreatic exocrine secretion" EXACT [ncithesaurus:Pancreatic_Exocrine_Secretion] +synonym: "pars exocrina pancreatis secretion" EXACT [OBOL:automatic] +synonym: "secretion of pars exocrina pancreatis" EXACT [OBOL:automatic] +xref: http://linkedlifedata.com/resource/umls/id/C1518867 +xref: MA:0002518 +xref: NCIT:C33256 +xref: UMLS:C1518867 {source="ncithesaurus:Pancreatic_Exocrine_Secretion"} +is_a: UBERON:0004795 ! pancreas secretion +intersection_of: UBERON:0000456 ! secretion of exocrine gland +intersection_of: part_of UBERON:0000017 ! exocrine pancreas +relationship: part_of UBERON:0000017 ! exocrine pancreas + +[Term] +id: UBERON:0004794 +name: esophagus secretion +def: "A secretion that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] +synonym: "esophageal secretion" EXACT [FMA:79662] +synonym: "gullet secretion" EXACT [OBOL:automatic] +synonym: "oesophagus secretion" EXACT [OBOL:automatic] +synonym: "secretion of esophagus" EXACT [OBOL:automatic] +synonym: "secretion of gullet" EXACT [OBOL:automatic] +synonym: "secretion of oesophagus" EXACT [OBOL:automatic] +xref: FMA:79662 +xref: http://linkedlifedata.com/resource/umls/id/C0227179 +xref: MA:0002514 +xref: NCIT:C52555 +xref: UMLS:C0227179 {source="ncithesaurus:Esophagus_Secretion"} +is_a: UBERON:0000456 ! secretion of exocrine gland +intersection_of: UBERON:0000456 ! secretion of exocrine gland +intersection_of: part_of UBERON:0001043 ! esophagus +relationship: part_of UBERON:0001043 ! esophagus + +[Term] +id: UBERON:0004795 +name: pancreas secretion +def: "A secretion that is part of a pancreas [Automatically generated definition]." [OBOL:automatic] +synonym: "pancreatic secretion" EXACT [OBOL:automatic] +synonym: "secretion of pancreas" EXACT [OBOL:automatic] +xref: http://linkedlifedata.com/resource/umls/id/C0030296 +xref: MA:0002516 +xref: NCIT:C13270 +xref: UMLS:C0030296 {source="ncithesaurus:Pancreatic_Secretion"} +is_a: UBERON:0000456 ! secretion of exocrine gland +intersection_of: UBERON:0000456 ! secretion of exocrine gland +intersection_of: part_of UBERON:0001264 ! pancreas +relationship: part_of UBERON:0001264 ! pancreas + +[Term] +id: UBERON:0004796 +name: prostate gland secretion +alt_id: UBERON:0010142 +def: "A bodily secretion that is produced by the prostate gland." [http://orcid.org/0000-0002-6601-2165] +synonym: "prostate fluid" RELATED [BTO:0001232] +synonym: "prostate secretion" EXACT [OBOL:automatic] +synonym: "prostatic fluid" EXACT [FMA:66884] +synonym: "secretion of prostate" EXACT [OBOL:automatic] +synonym: "secretion of prostate gland" EXACT [OBOL:automatic] +xref: EMAPA:36545 +xref: FMA:66884 +xref: http://linkedlifedata.com/resource/umls/id/C1709733 +xref: MA:0002525 +xref: NCIT:C52553 +xref: Secretions +xref: UMLS:C1709733 {source="ncithesaurus:Prostate_Gland_Secretion"} +is_a: UBERON:0006530 {source="FMA"} ! seminal fluid +intersection_of: UBERON:0000456 ! secretion of exocrine gland +intersection_of: produced_by UBERON:0002367 ! prostate gland +relationship: produced_by UBERON:0002367 ! prostate gland + +[Term] +id: UBERON:0004797 +name: blood vessel layer +def: "Any of the tissue layers that comprise a blood vessel. Examples: tunica media, tunica adventitia." [http://orcid.org/0000-0002-6601-2165] +xref: EMAPA:36296 +xref: MA:0002854 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004923 ! organ component layer +intersection_of: UBERON:0004923 ! organ component layer +intersection_of: part_of UBERON:0001981 ! blood vessel +relationship: part_of UBERON:0035965 ! wall of blood vessel + +[Term] +id: UBERON:0004798 +name: respiratory system basal lamina +def: "A basal lamina that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +synonym: "apparatus respiratorius basal lamina" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius basal lamina of connective tissue" EXACT [OBOL:automatic] +synonym: "basal lamina of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "basal lamina of connective tissue of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "basal lamina of connective tissue of respiratory system" EXACT [OBOL:automatic] +synonym: "basal lamina of respiratory system" EXACT [OBOL:automatic] +synonym: "respiratory system basal lamina of connective tissue" EXACT [OBOL:automatic] +xref: EMAPA:37571 {source="MA:th"} +xref: MA:0001816 +is_a: UBERON:0000482 ! basal lamina of epithelium +intersection_of: UBERON:0000482 ! basal lamina of epithelium +intersection_of: part_of UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0004799 +name: trachea basal lamina +def: "A basal lamina that is part of a respiratory airway [Automatically generated definition]." [OBOL:automatic] +synonym: "basal lamina of connective tissue of respiratory airway" EXACT [OBOL:automatic] +xref: EMAPA:37553 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1710454 +xref: MA:0001855 +xref: NCIT:C49303 +xref: UMLS:C1710454 {source="ncithesaurus:Trachea_Basal_Lamina"} +is_a: UBERON:0004798 ! respiratory system basal lamina +intersection_of: UBERON:0000482 ! basal lamina of epithelium +intersection_of: part_of UBERON:0001005 ! respiratory airway +relationship: part_of UBERON:0001005 ! respiratory airway + +[Term] +id: UBERON:0004800 +name: bronchus basal lamina +def: "A basal lamina that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "basal lamina of bronchi" EXACT [OBOL:automatic] +synonym: "basal lamina of bronchial trunk" EXACT [OBOL:automatic] +synonym: "basal lamina of bronchus" EXACT [OBOL:automatic] +synonym: "basal lamina of connective tissue of bronchi" EXACT [OBOL:automatic] +synonym: "basal lamina of connective tissue of bronchial trunk" EXACT [OBOL:automatic] +synonym: "basal lamina of connective tissue of bronchus" EXACT [OBOL:automatic] +synonym: "bronchi basal lamina" EXACT [OBOL:automatic] +synonym: "bronchi basal lamina of connective tissue" EXACT [OBOL:automatic] +synonym: "bronchial trunk basal lamina" EXACT [OBOL:automatic] +synonym: "bronchial trunk basal lamina of connective tissue" EXACT [OBOL:automatic] +synonym: "bronchus basal lamina of connective tissue" EXACT [OBOL:automatic] +xref: EMAPA:37810 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1707050 +xref: MA:0001833 +xref: NCIT:C49207 +xref: UMLS:C1707050 {source="ncithesaurus:Bronchus_Basal_Lamina"} +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004799 ! trachea basal lamina +intersection_of: UBERON:0000482 ! basal lamina of epithelium +intersection_of: part_of UBERON:0002185 ! bronchus +relationship: part_of UBERON:0002185 ! bronchus + +[Term] +id: UBERON:0004801 +name: cervix epithelium +def: "An epithelium that is part of a uterine cervix [Automatically generated definition]." [OBOL:automatic] +subset: efo_slim +subset: pheno_slim +synonym: "cervical canal epithelial tissue" EXACT [OBOL:automatic] +synonym: "cervical canal epithelium" EXACT [OBOL:automatic] +synonym: "cervical epithelium" EXACT [BTO:0000241] +synonym: "cervix epithelial tissue" EXACT [OBOL:automatic] +synonym: "epithelium of cervix" EXACT [OBOL:automatic] +xref: BTO:0000241 +xref: CALOHA:TS-0137 +xref: EFO:0001913 +xref: EMAPA:29929 +xref: http://linkedlifedata.com/resource/umls/id/C1711358 +xref: MA:0001724 +xref: NCIT:C49218 +xref: UMLS:C1711358 {source="ncithesaurus:Cervix_Epithelium"} +is_a: UBERON:0006955 ! uterine epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000002 ! uterine cervix +relationship: contributes_to_morphology_of UBERON:0000002 ! uterine cervix +relationship: part_of UBERON:0000002 ! uterine cervix + +[Term] +id: UBERON:0004802 +name: respiratory tract epithelium +def: "the pseudostratified ciliated epithelium that lines much of the conducting portion of the airway, including part of the nasal cavity and larynx, the trachea, and bronchi" [ISBN:0-683-40008-8, MGI:anna, MP:0010942] +subset: pheno_slim +synonym: "airway epithelium" RELATED [BTO:0000419] +synonym: "epithelial tissue of respiratory tract" EXACT [OBOL:automatic] +synonym: "epithelium of respiratory tract" EXACT [OBOL:automatic] +synonym: "respiratory epithelium" RELATED [BTO:0000419] +synonym: "respiratory tract epithelial tissue" EXACT [OBOL:automatic] +xref: BTO:0000419 +xref: CALOHA:TS-0023 +xref: EMAPA:32827 +xref: http://www.snomedbrowser.com/Codes/Details/321764001 +xref: MA:0001480 +xref: VHOG:0000981 +is_a: UBERON:0004807 ! respiratory system epithelium +is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0010499 ! pseudostratified ciliated columnar epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000065 ! respiratory tract +relationship: contributes_to_morphology_of UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0000072 ! proximo-distal subdivision of respiratory tract + +[Term] +id: UBERON:0004803 +name: penis epithelium +def: "An epithelium that is part of a penis [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of penis" EXACT [OBOL:automatic] +synonym: "epithelium of penis" EXACT [OBOL:automatic] +synonym: "penis epithelial tissue" EXACT [OBOL:automatic] +xref: EHDAA2:0004039 +xref: EMAPA:35674 +xref: MA:0001742 +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0012275 ! meso-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000989 ! penis +relationship: part_of UBERON:0000989 ! penis + +[Term] +id: UBERON:0004804 +name: oviduct epithelium +def: "An epithelium that is part of a oviduct [Automatically generated definition]." [OBOL:automatic] +synonym: "columnar epithelium of the fallopian tube" RELATED [BTO:0002402] +synonym: "columnar epithelium of the oviduct" RELATED [BTO:0002402] +synonym: "epithelial tissue of oviduct" EXACT [OBOL:automatic] +synonym: "epithelium of fallopian tube" EXACT [OBOL:automatic] +synonym: "epithelium of oviduct" EXACT [OBOL:automatic] +synonym: "epithelium of uterine tube" EXACT [FMA:62016] +synonym: "fallopian tube epithelium" RELATED [BTO:0002402] +synonym: "oviduct epithelial tissue" EXACT [OBOL:automatic] +xref: BTO:0002402 +xref: CALOHA:TS-1316 +xref: EMAPA:29043 +xref: MA:0001718 +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0012275 ! meso-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000993 ! oviduct +relationship: part_of UBERON:0003889 ! fallopian tube + +[Term] +id: UBERON:0004805 +name: seminal vesicle epithelium +def: "An epithelium that is part of a seminal vesicle [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of seminal gland" EXACT [OBOL:automatic] +synonym: "epithelial tissue of seminal vesicle" EXACT [OBOL:automatic] +synonym: "epithelium of seminal gland" EXACT [OBOL:automatic] +synonym: "epithelium of seminal vesicle" EXACT [OBOL:automatic] +synonym: "seminal gland epithelial tissue" EXACT [OBOL:automatic] +synonym: "seminal gland epithelium" EXACT [OBOL:automatic] +synonym: "seminal vesicle epithelial tissue" EXACT [OBOL:automatic] +xref: CALOHA:TS-2069 +xref: EMAPA:29771 +xref: http://linkedlifedata.com/resource/umls/id/C1710049 +xref: MA:0001745 +xref: NCIT:C49295 +xref: UMLS:C1710049 {source="ncithesaurus:Seminal_Vesicle_Epithelium"} +is_a: UBERON:0004910 ! epithelium of male gonad +is_a: UBERON:0012275 ! meso-epithelium +is_a: UBERON:0034969 ! epithelial layer of duct +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000998 ! seminal vesicle +relationship: part_of UBERON:0000998 ! seminal vesicle + +[Term] +id: UBERON:0004806 +name: vas deferens epithelium +def: "An epithelium that is part of a vas deferens [Automatically generated definition]." [OBOL:automatic] +synonym: "deferent duct epithelial tissue" EXACT [OBOL:automatic] +synonym: "deferent duct epithelium" EXACT [OBOL:automatic] +synonym: "ductus deferens epithelial tissue" EXACT [OBOL:automatic] +synonym: "ductus deferens epithelium" EXACT [OBOL:automatic] +synonym: "epithelial tissue of deferent duct" EXACT [OBOL:automatic] +synonym: "epithelial tissue of ductus deferens" EXACT [OBOL:automatic] +synonym: "epithelial tissue of sperm duct" EXACT [OBOL:automatic] +synonym: "epithelial tissue of vas deferen" EXACT [OBOL:automatic] +synonym: "epithelial tissue of vas deferens" EXACT [OBOL:automatic] +synonym: "epithelium of deferent duct" EXACT [OBOL:automatic] +synonym: "epithelium of ductus deferens" EXACT [OBOL:automatic] +synonym: "epithelium of sperm duct" EXACT [OBOL:automatic] +synonym: "epithelium of vas deferen" EXACT [OBOL:automatic] +synonym: "epithelium of vas deferens" EXACT [OBOL:automatic] +synonym: "sperm duct epithelial tissue" EXACT [OBOL:automatic] +synonym: "sperm duct epithelium" EXACT [OBOL:automatic] +synonym: "vas deferen epithelial tissue" EXACT [OBOL:automatic] +synonym: "vas deferen epithelium" EXACT [OBOL:automatic] +synonym: "vas deferens epithelial tissue" EXACT [OBOL:automatic] +xref: EMAPA:29274 +xref: FMA:225317 +xref: http://linkedlifedata.com/resource/umls/id/C1710617 +xref: MA:0001749 +xref: NCIT:C49315 +xref: UMLS:C1710617 {source="ncithesaurus:Vas_Deferens_Epithelium"} +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0034969 ! epithelial layer of duct +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001000 ! vas deferens +relationship: part_of UBERON:0001000 ! vas deferens + +[Term] +id: UBERON:0004807 +name: respiratory system epithelium +def: "An epithelium that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "apparatus respiratorius epithelial tissue" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius epithelium" EXACT [OBOL:automatic] +synonym: "epithelial tissue of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "epithelial tissue of respiratory system" EXACT [OBOL:automatic] +synonym: "epithelium of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "epithelium of respiratory system" EXACT [OBOL:automatic] +synonym: "respiratory system epithelial tissue" EXACT [OBOL:automatic] +xref: CALOHA:TS-0023 +xref: EMAPA:32826 +xref: MA:0001823 +xref: VHOG:0000981 +is_a: UBERON:0000483 ! epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0004808 +name: gastrointestinal system epithelium +def: "An epithelium that is part of a digestive system [Automatically generated definition]." [OBOL:automatic] +synonym: "digestive system epithelial tissue" EXACT [OBOL:automatic] +synonym: "digestive system epithelium" EXACT [OBOL:automatic] +synonym: "epithelial tissue of digestive system" EXACT [OBOL:automatic] +synonym: "epithelial tissue of gastrointestinal system" EXACT [OBOL:automatic] +synonym: "epithelium of digestive system" EXACT [OBOL:automatic] +synonym: "epithelium of gastrointestinal system" EXACT [OBOL:automatic] +synonym: "gastrointestinal system epithelial tissue" EXACT [OBOL:automatic] +xref: EMAPA:32683 +xref: MA:0001520 +is_a: UBERON:0000483 ! epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0005409 ! alimentary part of gastrointestinal system +relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system + +[Term] +id: UBERON:0004809 +name: salivary gland epithelium +def: "An epithelium that is part of a salivary gland [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "epithelial tissue of salivary gland" EXACT [OBOL:automatic] +synonym: "epithelium of salivary gland" EXACT [OBOL:automatic] +synonym: "salivary gland epithelial tissue" EXACT [OBOL:automatic] +xref: BTO:0004421 +xref: CALOHA:TS-2067 +xref: EMAPA:32816 +xref: MA:0001587 +is_a: UBERON:0003929 ! digestive tract epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001044 ! saliva-secreting gland +relationship: part_of UBERON:0001044 ! saliva-secreting gland + +[Term] +id: UBERON:0004810 +name: nephron tubule epithelium +def: "the cellular avascular layer of the renal tubule luminar surfaces" [MGI:csmith, MP:0009640] +subset: pheno_slim +synonym: "kidney tubule epithelium" EXACT [MA:0001681] +xref: BTO:0005239 +xref: EMAPA:36524 +xref: http://linkedlifedata.com/resource/umls/id/C1709902 +xref: MA:0001681 +xref: NCIT:C49276 +xref: UMLS:C1709902 {source="ncithesaurus:Renal_Tubule_Epithelium"} +is_a: UBERON:0004211 ! nephron epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: adjacent_to UBERON:0000464 ! anatomical space +intersection_of: part_of UBERON:0001231 ! nephron tubule +relationship: adjacent_to UBERON:0000464 ! anatomical space +relationship: contributes_to_morphology_of UBERON:0001231 ! nephron tubule +relationship: part_of UBERON:0001231 ! nephron tubule + +[Term] +id: UBERON:0004811 +name: endometrium epithelium +def: "An epithelium that is part of an endometrium [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "endometrium epithelial tissue" EXACT [OBOL:automatic] +synonym: "epithelial tissue of endometrium" EXACT [OBOL:automatic] +synonym: "epithelium of endometrium" EXACT [OBOL:automatic] +synonym: "epithelium of tunica mucosa of endometrium" EXACT [OBOL:automatic] +synonym: "uterine epithelium" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/19829370] +xref: EMAPA:35307 +xref: http://www.snomedbrowser.com/Codes/Details/253526009 +xref: MA:0002731 +is_a: UBERON:0003350 ! epithelium of mucosa +is_a: UBERON:0006955 ! uterine epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001295 ! endometrium +relationship: part_of UBERON:0001295 ! endometrium + +[Term] +id: UBERON:0004812 +name: male prepuce epithelium +def: "An epithelium that is part of a prepuce of penis [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of foreskin" EXACT [OBOL:automatic] +synonym: "epithelial tissue of penile prepuce" EXACT [OBOL:automatic] +synonym: "epithelial tissue of prepuce" BROAD [OBOL:automatic] +synonym: "epithelial tissue of prepuce of penis" EXACT [OBOL:automatic] +synonym: "epithelium of foreskin" EXACT [OBOL:automatic] +synonym: "epithelium of penile prepuce" EXACT [OBOL:automatic] +synonym: "epithelium of prepuce" BROAD [OBOL:automatic] +synonym: "epithelium of prepuce of penis" EXACT [OBOL:automatic] +synonym: "foreskin epithelial tissue" EXACT [OBOL:automatic] +synonym: "foreskin epithelium" EXACT [OBOL:automatic] +synonym: "penile prepuce epithelial tissue" EXACT [OBOL:automatic] +synonym: "penile prepuce epithelium" EXACT [OBOL:automatic] +synonym: "prepuce epithelial tissue" BROAD [OBOL:automatic] +synonym: "prepuce epithelium" EXACT [MA:0001753] +synonym: "prepuce of penis epithelial tissue" EXACT [OBOL:automatic] +synonym: "prepuce of penis epithelium" BROAD [OBOL:automatic] +xref: EMAPA:30655 +xref: http://linkedlifedata.com/resource/umls/id/C1709639 +xref: MA:0001753 +xref: NCIT:C49270 +xref: UMLS:C1709639 {source="ncithesaurus:Prepuce_Epithelium"} +is_a: UBERON:0004803 ! penis epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001332 ! prepuce of penis +relationship: part_of UBERON:0001332 ! prepuce of penis + +[Term] +id: UBERON:0004813 +name: seminiferous tubule epithelium +def: "the stratified epithelial lining of the seminiferous tubules, consisting of the developing spermatozoa and the supporting Sertoli cells, which are tall, columnar type cells that line the tubule" [MGI:csmith, MP:0011750] +subset: pheno_slim +synonym: "epithelial tissue of seminiferous tubule" EXACT [OBOL:automatic] +synonym: "epithelial tissue of seminiferous tubule of testis" EXACT [OBOL:automatic] +synonym: "epithelium of seminiferous tubule" EXACT [OBOL:automatic] +synonym: "epithelium of seminiferous tubule of testis" EXACT [OBOL:automatic] +synonym: "germinal epithelium (male)" EXACT [http://en.wikipedia.org/wiki/Germinal_epithelium_(male)] +synonym: "male germinal epithelium" EXACT [http://en.wikipedia.org/wiki/Germinal_epithelium_(male)] +synonym: "seminiferous epithelium" EXACT [BTO:0001811] +synonym: "seminiferous tubule epithelial tissue" EXACT [OBOL:automatic] +synonym: "testis germinal epithelium" EXACT [VHOG:0000631] +synonym: "wall of seminiferous tubule" EXACT [http://en.wikipedia.org/wiki/Germinal_epithelium_(male)] +xref: BTO:0001811 +xref: CALOHA:TS-0920 +xref: EHDAA:8148 +xref: EMAPA:35761 +xref: FMA:19885 +xref: GAID:401 +xref: http://en.wikipedia.org/wiki/Germinal_epithelium_(male) +xref: http://linkedlifedata.com/resource/umls/id/C0036629 +xref: MA:0001748 +xref: MESH:D012670 +xref: NCIT:C49296 +xref: RETIRED_EHDAA2:0002009 +xref: UMLS:C0036629 {source="ncithesaurus:Seminiferous_Epithelium"} +xref: VHOG:0000631 +is_a: UBERON:0001136 ! mesothelium +is_a: UBERON:0004910 ! epithelium of male gonad +is_a: UBERON:0034969 ! epithelial layer of duct +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001343 ! seminiferous tubule of testis +relationship: contributes_to_morphology_of UBERON:0001343 ! seminiferous tubule of testis +relationship: part_of UBERON:0001343 ! seminiferous tubule of testis + +[Term] +id: UBERON:0004814 +name: upper respiratory tract epithelium +def: "An epithelium that is part of a upper respiratory tract [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of upper respiratory tract" EXACT [OBOL:automatic] +synonym: "epithelium of upper respiratory tract" EXACT [OBOL:automatic] +synonym: "upper respiratory tract epithelial tissue" EXACT [OBOL:automatic] +xref: EMAPA:35894 +xref: MA:0001912 +is_a: UBERON:0004802 ! respiratory tract epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001557 ! upper respiratory tract +relationship: part_of UBERON:0001557 ! upper respiratory tract + +[Term] +id: UBERON:0004815 +name: lower respiratory tract epithelium +def: "An epithelium that is part of a lower respiratory tract [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of lower respiratory tract" EXACT [OBOL:automatic] +synonym: "epithelium of lower respiratory tract" EXACT [OBOL:automatic] +synonym: "lower respiratory tract epithelial tissue" EXACT [OBOL:automatic] +xref: EMAPA:37549 {source="MA:th"} +xref: MA:0001481 +is_a: UBERON:0004802 ! respiratory tract epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001558 ! lower respiratory tract +relationship: part_of UBERON:0001558 ! lower respiratory tract + +[Term] +id: UBERON:0004816 +name: larynx epithelium +def: "An epithelium that is part of a larynx [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "epithelial tissue of larynx" EXACT [OBOL:automatic] +synonym: "epithelium of larynx" EXACT [OBOL:automatic] +synonym: "laryngeal epithelium" EXACT [OBOL:automatic] +synonym: "larynx epithelial tissue" EXACT [OBOL:automatic] +xref: EHDAA2:0004065 +xref: EMAPA:35472 +xref: http://linkedlifedata.com/resource/umls/id/C0751258 +xref: MA:0001765 +xref: NCIT:C49247 +xref: UMLS:C0751258 {source="ncithesaurus:Laryngeal_Epithelium"} +is_a: UBERON:0004802 ! respiratory tract epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001737 ! larynx +relationship: contributes_to_morphology_of UBERON:0001737 ! larynx +relationship: part_of UBERON:0001737 ! larynx + +[Term] +id: UBERON:0004817 +name: lacrimal gland epithelium +def: "An epithelium that is part of a lacrimal gland [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of lacrimal gland" EXACT [OBOL:automatic] +synonym: "epithelium of lacrimal gland" EXACT [OBOL:automatic] +synonym: "lacrimal gland epithelial tissue" EXACT [OBOL:automatic] +xref: EMAPA:36515 +xref: MA:0001297 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015808 ! eye epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001817 ! lacrimal gland +relationship: part_of UBERON:0001817 ! lacrimal gland + +[Term] +id: UBERON:0004818 +name: terminal bronchus epithelium +def: "An epithelium that is part of a terminal bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of terminal bronchus" EXACT [OBOL:automatic] +synonym: "epithelium of terminal bronchus" EXACT [OBOL:automatic] +synonym: "terminal bronchus epithelial tissue" EXACT [OBOL:automatic] +xref: EMAPA:37764 {source="MA:th"} +xref: MA:0001851 +is_a: UBERON:0002031 ! epithelium of bronchus +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002041 ! terminal bronchus +relationship: part_of UBERON:0002041 ! terminal bronchus + +[Term] +id: UBERON:0004819 +name: kidney epithelium +def: "the cellular avascular layer of the kidney luminar surfaces" [MGI:csmith, MP:0004967] +subset: pheno_slim +synonym: "epithelial tissue of kidney" EXACT [OBOL:automatic] +synonym: "epithelium of kidney" EXACT [OBOL:automatic] +synonym: "kidney epithelial tissue" EXACT [OBOL:automatic] +synonym: "renal epithelium" RELATED [EMAPA:35457] +xref: BTO:0000059 +xref: CALOHA:TS-0505 +xref: EMAPA:35457 +xref: MA:0002846 +is_a: UBERON:0000483 ! epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002113 ! kidney +relationship: contributes_to_morphology_of UBERON:0002113 ! kidney +relationship: part_of UBERON:0002113 ! kidney + +[Term] +id: UBERON:0004820 +name: bile duct epithelium +def: "Any epithelium that lines one of the bile ducts." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "biliary duct epithelium" EXACT [OBOL:automatic] +synonym: "epithelium of bile duct" EXACT [OBOL:automatic] +synonym: "epithelium of biliary duct" EXACT [OBOL:automatic] +xref: BTO:0000417 +xref: http://linkedlifedata.com/resource/umls/id/C1711208 +xref: MA:0001629 +xref: NCIT:C43616 +xref: UMLS:C1711208 {source="ncithesaurus:Bile_Duct_Epithelium"} +is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0034932 ! epithelium of biliary system +is_a: UBERON:0034969 ! epithelial layer of duct +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002394 ! bile duct +relationship: part_of UBERON:0002394 ! bile duct + +[Term] +id: UBERON:0004821 +name: pulmonary alveolus epithelium +def: "The epithelial layer of the alveoli[MP]. The layer of cells covering the lining of the tiny air sacs at the end of the bronchioles[BTO]." [BTO:0003511, MP:0010898] +subset: pheno_slim +synonym: "alveolar epithelium" RELATED [EMAPA:35121] +synonym: "alveolus epithelial tissue" EXACT [OBOL:automatic] +synonym: "alveolus epithelium" EXACT [MA:0001771] +synonym: "epithelial tissue of alveolus" EXACT [OBOL:automatic] +synonym: "epithelium of alveolus" EXACT [OBOL:automatic] +synonym: "epithelium of pulmonary alveolus" EXACT [FMA:63915] +synonym: "pulmonary alveolar epithelium" EXACT [FMA:63915] +synonym: "pulmonary alveolus epithelium" EXACT [MP:0010898] +xref: BTO:0003511 +xref: EMAPA:35121 +xref: FMA:63915 +xref: MA:0001771 +xref: NCIT:C12867 +is_a: UBERON:0000115 ! lung epithelium +is_a: UBERON:0000487 {source="FMA"} ! simple squamous epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002299 ! alveolus of lung +relationship: contributes_to_morphology_of UBERON:0000115 ! lung epithelium +relationship: contributes_to_morphology_of UBERON:0002299 ! alveolus of lung +relationship: part_of UBERON:0004894 {source="FMA"} ! alveolar wall + +[Term] +id: UBERON:0004822 +name: extrahepatic bile duct epithelium +def: "An epithelium that is part of a extrahepatic bile duct [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of extrahepatic bile duct" EXACT [OBOL:automatic] +synonym: "epithelium of extrahepatic bile duct" EXACT [OBOL:automatic] +synonym: "extrahepatic bile duct epithelial tissue" EXACT [OBOL:automatic] +xref: EHDAA2:0000742 +xref: EHDAA:3051 +xref: http://linkedlifedata.com/resource/umls/id/C1711347 +xref: MA:0002661 +xref: NCIT:C43618 +xref: UMLS:C1711347 {source="ncithesaurus:Extrahepatic_Bile_Duct_Epithelium"} +is_a: UBERON:0004820 ! bile duct epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0003703 ! extrahepatic bile duct +relationship: part_of UBERON:0003703 ! extrahepatic bile duct + +[Term] +id: UBERON:0004823 +name: intrahepatic bile duct epithelium +def: "An epithelium that is part of a intrahepatic bile duct [Automatically generated definition]." [OBOL:automatic] +synonym: "epithelial tissue of intrahepatic bile duct" EXACT [OBOL:automatic] +synonym: "epithelium of intrahepatic bile duct" EXACT [OBOL:automatic] +synonym: "intrahepatic bile duct epithelial tissue" EXACT [OBOL:automatic] +xref: EHDAA2:0000743 +xref: EHDAA:3053 +xref: http://linkedlifedata.com/resource/umls/id/C1708552 +xref: MA:0002662 +xref: NCIT:C43617 +xref: UMLS:C1708552 {source="ncithesaurus:Intrahepatic_Bile_Duct_Epithelium"} +is_a: UBERON:0004820 ! bile duct epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0003704 ! intrahepatic bile duct +relationship: part_of UBERON:0003704 ! intrahepatic bile duct + +[Term] +id: UBERON:0004825 +name: dental lamina +def: "A band of ectodermal cells growing from the epithelium of the embryonic jaws into the underlying mesenchyme and giving rise to the primordia of the enamel organs of the teeth." [http://medical-dictionary.thefreedictionary.com/dental+lamina] +synonym: "embryonic dental lamina" EXACT [] +synonym: "fetal dental lamina" RELATED [] +synonym: "lamina dentalis" RELATED LATIN [http://en.wikipedia.org/wiki/Dental_lamina] +xref: BTO:0005563 +xref: Dental:lamina +xref: EMAPA:32902 +xref: FMA:306004 +xref: http://www.snomedbrowser.com/Codes/Details/362862007 +xref: MA:0001597 +is_a: UBERON:0000483 ! epithelium +is_a: UBERON:0000957 ! lamina +relationship: part_of UBERON:0003672 ! dentition + +[Term] +id: UBERON:0004827 +name: thyroid gland medulla +def: "A medulla that is part of a thyroid [Automatically generated definition]." [OBOL:automatic] +synonym: "medulla of thyroid" EXACT [OBOL:automatic] +synonym: "medulla of thyroid follicle" EXACT [OBOL:automatic] +synonym: "medulla of thyroid gland" EXACT [OBOL:automatic] +synonym: "medulla of thyroid gland follicle" EXACT [OBOL:automatic] +synonym: "thyroid follicle medulla" EXACT [OBOL:automatic] +synonym: "thyroid gland follicle medulla" EXACT [OBOL:automatic] +synonym: "thyroid medulla" EXACT [OBOL:automatic] +xref: EMAPA:37768 {source="MA:th"} +xref: MA:0000132 +is_a: UBERON:0000958 ! medulla of organ +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000958 ! medulla of organ +intersection_of: part_of UBERON:0002046 ! thyroid gland +relationship: part_of UBERON:0002046 ! thyroid gland + +[Term] +id: UBERON:0004829 +name: urethra skeletal muscle tissue +def: "A portion of skeletal muscle tissue that is part of a urethra [Automatically generated definition]." [OBOL:automatic] +synonym: "skeletal muscle of urethra" EXACT [OBOL:automatic] +synonym: "skeletal muscle tissue of urethra" EXACT [OBOL:automatic] +synonym: "urethra skeletal muscle" RELATED [MA:0001690] +synonym: "urethra skeletal muscle tissue" EXACT [OBOL:automatic] +synonym: "urethral skeletal muscle" RELATED [MA:0001690] +xref: EMAPA:37788 {source="MA:th"} +xref: MA:0001690 +is_a: UBERON:0001134 ! skeletal muscle tissue +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0000057 ! urethra +relationship: part_of UBERON:0003829 ! urethra muscle tissue + +[Term] +id: UBERON:0004830 +name: respiratory system skeletal muscle +def: "A portion of skeletal muscle tissue that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +synonym: "respiratory system skeletal muscle tissue" EXACT [OBOL:automatic] +synonym: "skeletal muscle of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "skeletal muscle of respiratory system" EXACT [OBOL:automatic] +synonym: "skeletal muscle tissue of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "skeletal muscle tissue of respiratory system" EXACT [OBOL:automatic] +xref: EMAPA:37583 {source="MA:th"} +xref: MA:0001829 +is_a: UBERON:0001134 ! skeletal muscle tissue +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0004831 +name: esophagus skeletal muscle +def: "A portion of skeletal muscle tissue that is part of a esophagus [Automatically generated definition]." [OBOL:automatic] +comment: Most muscle tissue lining the digestive tract is smooth, but part of the externa of the esophagus is skeletal +synonym: "esophagus skeletal muscle tissue" EXACT [OBOL:automatic] +synonym: "skeletal muscle of esophagus" EXACT [OBOL:automatic] +xref: EMAPA:36523 +xref: MA:0001572 +is_a: UBERON:0003898 ! skeletal muscle tissue of trunk +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0001043 ! esophagus +relationship: part_of UBERON:0003832 ! esophagus muscle + +[Term] +id: UBERON:0004832 +name: anal region skeletal muscle +def: "A portion of skeletal muscle tissue that is part of an anal region [Automatically generated definition]." [OBOL:automatic] +synonym: "anal part of perineum skeletal muscle" EXACT [OBOL:automatic] +synonym: "anal part of perineum skeletal muscle tissue" EXACT [OBOL:automatic] +synonym: "anal region skeletal muscle tissue" EXACT [OBOL:automatic] +synonym: "anal triangle skeletal muscle" EXACT [OBOL:automatic] +synonym: "anal triangle skeletal muscle tissue" EXACT [OBOL:automatic] +synonym: "skeletal muscle of anal part of perineum" EXACT [OBOL:automatic] +synonym: "skeletal muscle of anal region" EXACT [OBOL:automatic] +synonym: "skeletal muscle of anal triangle" EXACT [OBOL:automatic] +synonym: "skeletal muscle tissue of anal part of perineum" EXACT [OBOL:automatic] +synonym: "skeletal muscle tissue of anal region" EXACT [OBOL:automatic] +synonym: "skeletal muscle tissue of anal triangle" EXACT [OBOL:automatic] +xref: EMAPA:37393 {source="MA:th"} +xref: MA:0001530 +is_a: UBERON:0001134 ! skeletal muscle tissue +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0001353 ! anal region +relationship: part_of UBERON:0001353 ! anal region + +[Term] +id: UBERON:0004833 +name: lip skeletal muscle +def: "A portion of skeletal muscle tissue that is part of a lip [Automatically generated definition]." [OBOL:automatic] +synonym: "lip skeletal muscle tissue" EXACT [OBOL:automatic] +synonym: "skeletal muscle of lip" EXACT [OBOL:automatic] +synonym: "skeletal muscle tissue of lip" EXACT [OBOL:automatic] +xref: EMAPA:37642 {source="MA:th"} +xref: MA:0001578 +is_a: UBERON:0001134 ! skeletal muscle tissue +intersection_of: UBERON:0001134 ! skeletal muscle tissue +intersection_of: part_of UBERON:0001833 ! lip +relationship: part_of UBERON:0001833 ! lip + +[Term] +id: UBERON:0004834 +name: hepatic duct smooth muscle +def: "Smooth muscle tissue in all or part of a hepatic duct." [http://orcid.org/0000-0002-6601-2165] +xref: EMAPA:37598 {source="MA:th"} +xref: MA:0001640 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0001135 ! smooth muscle tissue +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0005171 ! hepatic duct +relationship: part_of UBERON:0005171 ! hepatic duct + +[Term] +id: UBERON:0004835 +name: epididymis smooth muscle +def: "A portion of smooth muscle tissue that is part of a epididymis [Automatically generated definition]." [OBOL:automatic] +synonym: "epididymis involuntary muscle" EXACT [OBOL:automatic] +synonym: "epididymis non-striated muscle" EXACT [OBOL:automatic] +synonym: "epididymis smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "involuntary muscle of epididymis" EXACT [OBOL:automatic] +synonym: "non-striated muscle of epididymis" EXACT [OBOL:automatic] +synonym: "smooth muscle of epididymis" EXACT [OBOL:automatic] +synonym: "smooth muscle tissue of epididymis" EXACT [OBOL:automatic] +xref: EMAPA:30747 +xref: MA:0001736 +is_a: UBERON:0001135 ! smooth muscle tissue +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0001301 ! epididymis +relationship: part_of UBERON:0001301 ! epididymis + +[Term] +id: UBERON:0004848 +name: respiratory system arterial endothelium +def: "An endothelium of artery that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +synonym: "apparatus respiratorius arterial endothelium" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius artery endothelium" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius endothelium of artery" EXACT [OBOL:automatic] +synonym: "arterial endothelium of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "arterial endothelium of respiratory system" EXACT [OBOL:automatic] +synonym: "artery endothelium of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "artery endothelium of respiratory system" EXACT [OBOL:automatic] +synonym: "endothelium of artery of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "endothelium of artery of respiratory system" EXACT [OBOL:automatic] +synonym: "respiratory system artery endothelium" EXACT [OBOL:automatic] +synonym: "respiratory system endothelium of artery" EXACT [OBOL:automatic] +xref: EMAPA:37566 {source="MA:th"} +xref: MA:0001801 +is_a: UBERON:0001917 ! endothelium of artery +is_a: UBERON:0004702 ! respiratory system blood vessel endothelium +intersection_of: UBERON:0001917 ! endothelium of artery +intersection_of: part_of UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0003469 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! respiratory system artery + +[Term] +id: UBERON:0004849 +name: respiratory system venous endothelium +def: "An endothelium of vein that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] +synonym: "apparatus respiratorius endothelium of vein" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius vein endothelium" EXACT [OBOL:automatic] +synonym: "apparatus respiratorius venous endothelium" EXACT [OBOL:automatic] +synonym: "endothelium of vein of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "endothelium of vein of respiratory system" EXACT [OBOL:automatic] +synonym: "respiratory system endothelium of vein" EXACT [OBOL:automatic] +synonym: "respiratory system vein endothelium" EXACT [OBOL:automatic] +synonym: "vein endothelium of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "vein endothelium of respiratory system" EXACT [OBOL:automatic] +synonym: "venous endothelium of apparatus respiratorius" EXACT [OBOL:automatic] +synonym: "venous endothelium of respiratory system" EXACT [OBOL:automatic] +xref: EMAPA:37585 {source="MA:th"} +xref: MA:0001811 +is_a: UBERON:0001919 ! endothelium of vein +is_a: UBERON:0004702 ! respiratory system blood vessel endothelium +intersection_of: UBERON:0001919 ! endothelium of vein +intersection_of: part_of UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0003476 ! respiratory system venous blood vessel + +[Term] +id: UBERON:0004850 +name: lymph node endothelium +def: "An endothelium that is part of a lymph node [Automatically generated definition]." [OBOL:automatic] +synonym: "endothelium of lymph node" EXACT [OBOL:automatic] +xref: EMAPA:35526 +xref: MA:0000741 +is_a: UBERON:0001986 ! endothelium +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0000029 ! lymph node +relationship: part_of UBERON:0000029 ! lymph node + +[Term] +id: UBERON:0004851 +name: aorta endothelium +def: "the thin layer of flat cells that line the aorta and form a barrier between circulating blood in the lumen and the rest of the vessel wall" [MGI:csmith, MP:0009864] +subset: efo_slim +subset: pheno_slim +synonym: "adult aorta endothelium" EXACT [OBOL:automatic] +synonym: "aortic endothelium" RELATED [BTO:0000394] +synonym: "endothelium of adult aorta" EXACT [OBOL:automatic] +synonym: "endothelium of aorta" EXACT [OBOL:automatic] +synonym: "endothelium of trunk of aortic tree" EXACT [OBOL:automatic] +synonym: "endothelium of trunk of systemic arterial tree" EXACT [OBOL:automatic] +synonym: "trunk of aortic tree endothelium" EXACT [OBOL:automatic] +synonym: "trunk of systemic arterial tree endothelium" EXACT [OBOL:automatic] +xref: BTO:0000394 +xref: CALOHA:TS-0047 +xref: EFO:0002597 +xref: EMAPA:35134 +xref: http://linkedlifedata.com/resource/umls/id/C1706824 +xref: MA:0000701 +xref: NCIT:C49190 +xref: UMLS:C1706824 {source="ncithesaurus:Aorta_Endothelium"} +is_a: UBERON:0004638 ! blood vessel endothelium +is_a: UBERON:0004700 ! arterial system endothelium +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0000947 ! aorta +relationship: part_of UBERON:0000947 ! aorta + +[Term] +id: UBERON:0004852 +name: cardiovascular system endothelium +def: "An endothelium that is part of the cardiovascular system." [https://orcid.org/0000-0002-6601-2165] +subset: vertebrate_core +synonym: "endothelia" RELATED PLURAL [ZFA:0001639] +synonym: "vascular endothelia" RELATED PLURAL [XAO:0000356] +xref: BTO:0001853 +xref: EMAPA:35201 +xref: GAID:519 +xref: http://linkedlifedata.com/resource/umls/id/C0014261 +xref: MA:0000717 +xref: MESH:D004730 +xref: NCIT:C13053 +xref: TAO:0002171 +xref: UMLS:C0014261 {source="ncithesaurus:Vascular_Endothelium"} +xref: VHOG:0001217 +xref: XAO:0000356 +xref: ZFA:0001639 +is_a: UBERON:0001986 ! endothelium +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0004535 ! cardiovascular system +relationship: part_of UBERON:0004535 ! cardiovascular system + +[Term] +id: UBERON:0004854 +name: gastrointestinal system mesentery +def: "A mesentery that is part of a digestive system [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "digestive system mesentery" EXACT [OBOL:automatic] +synonym: "mesentery of digestive system" EXACT [OBOL:automatic] +synonym: "mesentery of gastrointestinal system" EXACT [OBOL:automatic] +xref: EMAPA:37068 {source="MA:th"} +xref: MA:0001900 +is_a: UBERON:0002095 ! mesentery +is_a: UBERON:0004782 ! gastrointestinal system serosa +intersection_of: UBERON:0002095 ! mesentery +intersection_of: part_of UBERON:0005409 ! alimentary part of gastrointestinal system + +[Term] +id: UBERON:0004857 +name: skeletal muscle connective tissue +def: "A connective tissue that surrounds a skeletal muscle tissue." [OBOL:automatic] +synonym: "connective tissue of skeletal muscle" EXACT [OBOL:automatic] +synonym: "connective tissue of skeletal muscle tissue" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of skeletal muscle" EXACT [OBOL:automatic] +synonym: "portion of connective tissue of skeletal muscle tissue" EXACT [OBOL:automatic] +synonym: "skeletal muscle interstitial tissue" RELATED [MA:0002868] +synonym: "skeletal muscle interstitum" RELATED [MA:0002868] +synonym: "skeletal muscle portion of connective tissue" EXACT [OBOL:automatic] +synonym: "skeletal muscle textus connectivus" EXACT [OBOL:automatic] +synonym: "skeletal muscle tissue connective tissue" EXACT [OBOL:automatic] +synonym: "skeletal muscle tissue portion of connective tissue" EXACT [OBOL:automatic] +synonym: "skeletal muscle tissue textus connectivus" EXACT [OBOL:automatic] +synonym: "textus connectivus of skeletal muscle" EXACT [OBOL:automatic] +synonym: "textus connectivus of skeletal muscle tissue" EXACT [OBOL:automatic] +xref: EMAPA:37743 {source="MA:th"} +xref: MA:0002868 +is_a: UBERON:0002384 ! connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: surrounds UBERON:0001134 ! skeletal muscle tissue +relationship: surrounds UBERON:0001134 ! skeletal muscle tissue + +[Term] +id: UBERON:0004858 +name: cellular cartilage +xref: EMAPA:37473 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/81997001 +xref: MA:0000105 +is_a: UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0004859 +name: eye gland +def: "A gland that is part of a eye. The eye is a compound unit which depending on the species may consist of an eyeballs plus associated ducts and integumentary structures. Eye glands therefore include the various types of lacrimal gland, the various types of apocrine and sebaceous glands associated with the eyelid." [http://orcid.org/0000-0002-6601-2165] +comment: Examples: harderian gland, accessory lacrimal gland, gland of Moll, gland of Zeis, nictitating membrane glands +subset: organ_slim +synonym: "eye-associated gland" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "gland of eye" EXACT [OBOL:automatic] +xref: EMAPA:35334 +xref: MA:0000267 +is_a: UBERON:0002530 ! gland +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0000970 ! eye +relationship: part_of UBERON:0000970 ! eye + +[Term] +id: UBERON:0004860 +name: obsolete brain ventricular zone +is_obsolete: true +consider: UBERON:0003053 + +[Term] +id: UBERON:0004861 +name: right lung alveolus +def: "An alveolus that is part of a right lung [Automatically generated definition]." [OBOL:automatic] +synonym: "alveolus of right lung" EXACT [OBOL:automatic] +xref: EMAPA:35997 +xref: http://linkedlifedata.com/resource/umls/id/C1709959 +xref: MA:0001786 +xref: NCIT:C49278 +xref: UMLS:C1709959 {source="ncithesaurus:Right_Lung_Alveolus"} +is_a: UBERON:0002299 ! alveolus of lung +intersection_of: UBERON:0003215 ! alveolus +intersection_of: part_of UBERON:0002167 ! right lung +relationship: part_of UBERON:0006526 ! right lung alveolar system + +[Term] +id: UBERON:0004862 +name: left lung alveolus +def: "An alveolus that is part of a left lung [Automatically generated definition]." [OBOL:automatic] +synonym: "alveolus of left lung" EXACT [OBOL:automatic] +synonym: "alveolus of lobe of left lung" EXACT [OBOL:automatic] +xref: EMAPA:19182 +xref: http://linkedlifedata.com/resource/umls/id/C1708673 +xref: MA:0001777 +xref: NCIT:C49251 +xref: UMLS:C1708673 {source="ncithesaurus:Left_Lung_Alveolus"} +is_a: UBERON:0002299 ! alveolus of lung +intersection_of: UBERON:0003215 ! alveolus +intersection_of: part_of UBERON:0002168 ! left lung +relationship: part_of UBERON:0006525 ! left lung alveolar system + +[Term] +id: UBERON:0004863 +name: thoracic sympathetic nerve trunk +def: "A sympathetic nerve trunk that is part of a thorax [Automatically generated definition]." [OBOL:automatic] +synonym: "nerve trunk of sympathetic nervous system of thorax" EXACT [OBOL:automatic] +synonym: "nerve trunk of sympathetic part of autonomic division of nervous system of thorax" EXACT [OBOL:automatic] +synonym: "sympathetic nerve trunk of thorax" EXACT [OBOL:automatic] +synonym: "sympathetic nervous system nerve trunk of thorax" EXACT [OBOL:automatic] +synonym: "thoracic part of sympathetic trunk" EXACT [FMA:6262] +synonym: "thoracic sympathetic chain" EXACT [FMA:6262] +synonym: "thoracic sympathetic trunk" RELATED [FMA:6262] +synonym: "thorax nerve trunk of sympathetic nervous system" EXACT [OBOL:automatic] +synonym: "thorax nerve trunk of sympathetic part of autonomic division of nervous system" EXACT [OBOL:automatic] +synonym: "thorax sympathetic nerve trunk" EXACT [OBOL:automatic] +synonym: "thorax sympathetic nervous system nerve trunk" EXACT [OBOL:automatic] +xref: EMAPA:37657 {source="MA:th"} +xref: FMA:6262 +xref: http://linkedlifedata.com/resource/umls/id/C1710393 +xref: MA:0001165 +xref: NCIT:C52827 +xref: UMLS:C1710393 {source="ncithesaurus:Thoracic_Sympathetic_Nerve_Trunk"} +is_a: UBERON:0004295 ! sympathetic nerve trunk +intersection_of: UBERON:0004295 ! sympathetic nerve trunk +intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk +relationship: part_of UBERON:0000915 ! thoracic segment of trunk + +[Term] +id: UBERON:0004864 +name: vasculature of retina +def: "A vasculature that is part of a retina [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "retina vasculature" EXACT [GO:0061298] +synonym: "retina vasculature of camera-type eye" EXACT [GO:0061298] +synonym: "retinal blood vessels" EXACT [FMA:76552] +synonym: "retinal blood vessels set" EXACT [FMA:76552] +synonym: "retinal vasculature" EXACT [OBOL:automatic] +synonym: "set of blood vessels of retina" EXACT [OBOL:automatic] +synonym: "set of retinal blood vessels" EXACT [FMA:76552] +synonym: "vasa sanguinea retinae" EXACT LATIN [FMA:76552, FMA:TA] +xref: FMA:76552 +xref: MESH:D012171 +xref: XAO:0004153 +is_a: UBERON:0002203 ! vasculature of eye +is_a: UBERON:0036302 ! vasculature of central nervous system plus retina +intersection_of: UBERON:0002049 ! vasculature +intersection_of: part_of UBERON:0000966 ! retina +relationship: part_of UBERON:0000966 ! retina + +[Term] +id: UBERON:0004865 +name: actinopterygian parietal bone +def: "Dermal bone that covers the otic region and may articulate with its antimere medially, with the frontal bone anteriorly, the pterotic laterally, the supraoccipital medio-posteriorly, and the epiotic and extrascapula latero-posteriorly. The parietal is a paired bone.[TAO]" [TAO:0000486, TAO:GA_TG] +synonym: "actinopterygian parietal" EXACT [] +synonym: "frontal bone" NARROW [FMA:52734] +synonym: "parietal bone" NARROW SENSU [TAO:0000486] +synonym: "parietals" RELATED PLURAL [TAO:0000486] +synonym: "post parietal" RELATED [ZFA:0000486] +xref: TAO:0000486 +xref: VHOG:0001327 +xref: ZFA:0000486 +is_a: UBERON:0002514 ! intramembranous bone +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0011164 ! neurocranium bone +relationship: part_of UBERON:0003110 {source="ZFA"} ! otic region +relationship: part_of UBERON:0003113 {source="ZFA"} ! dermatocranium +relationship: part_of UBERON:0004339 {source="http://www.ncbi.nlm.nih.gov/pubmed/11523816"} ! vault of skull + +[Term] +id: UBERON:0004866 +name: actinopterygian frontal bone +def: "Dermal bone that bears part of the supraorbital canal and usually covers a large area of the neurocranium occupying part of the ethmoidal, orbitosphenoid, and otic regions. Commonly, the frontal bone articulates with its antimere medially, with lateral ethmoid, orbitosphenoid and pterosphenoid ventrolaterally, with supraorbital bone(s), autosphenotic and pterotic laterally, and with parietal posteriorly.[TAO]." [TAO:0000514] +synonym: "actinopterygian frontal" EXACT [TAO:0000514] +synonym: "actinopterygian frontal bone" EXACT [TAO:0000514] +synonym: "frontal bone" NARROW [TAO:0000514] +synonym: "frontals" RELATED PLURAL [TAO:0000514] +xref: TAO:0000514 +xref: VHOG:0001324 +xref: ZFA:0000514 +is_a: UBERON:0008907 {source="ZFA"} ! dermal bone +is_a: UBERON:0011164 ! neurocranium bone +relationship: part_of UBERON:0003113 {source="ZFA"} ! dermatocranium +relationship: part_of UBERON:0004339 {source="http://www.ncbi.nlm.nih.gov/pubmed/11523816"} ! vault of skull + +[Term] +id: UBERON:0004867 +name: orbital cavity +def: "Anatomical cavity bounded by the orbital region of the cranium and forming the location of some or all of the eye." [http://orcid.org/0000-0002-6601-2165] +synonym: "orbit" RELATED [AAO:0000343] +xref: AAO:0000343 +xref: FMA:84961 +xref: http://www.snomedbrowser.com/Codes/Details/280541000 +xref: Orbit:(anatomy) +xref: ZFA:0005558 +is_a: UBERON:0002553 ! anatomical cavity +intersection_of: UBERON:0002553 ! anatomical cavity +intersection_of: luminal_space_of UBERON:0001697 ! orbit of skull +relationship: luminal_space_of UBERON:0001697 ! orbit of skull +relationship: part_of UBERON:0001697 ! orbit of skull + +[Term] +id: UBERON:0004868 +name: tapetum lucidum of camera-type eye +def: "A layer of tissue in the eye of many vertebrate animals, that lies immediately behind or sometimes within the retina. It reflects visible light back through the retina, increasing the light available to the photoreceptors" [http://en.wikipedia.org/wiki/Tapetum_lucidum, http://www.ncbi.nlm.nih.gov/pubmed/14738502] +synonym: "tapeta lucida" EXACT PLURAL [] +synonym: "tapetum lucidum" EXACT [] +synonym: "tapis luisant@fr" EXACT [] +xref: Tapetum:lucidum +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0015169 ! tapetum +relationship: part_of UBERON:0010230 ! eyeball of camera-type eye + +[Term] +id: UBERON:0004869 +name: parietal organ +def: "A part of the epithalamus present in some animal species. The eye may be photoreceptive and is usually associated with the pineal gland, regulating circadian rhythmicity and hormone production for thermoregulation. The parietal eye is a part of the epithalamus, which can be divided into two major parts; the epiphysis (the pineal organ, or pineal gland if mostly endocrine) and the parietal organ (often called the parietal eye, or third eye if it is photoreceptive). It arises as an anterior evagination of the pineal organ or as a separate outgrowth of the roof of the diencephalon. In some species, it protrudes through the skull.[4] The parietal eye uses a different biochemical method of detecting light than rod cells or cone cells in a normal vertebrate eye[WP]." [http://en.wikipedia.org/wiki/Parietal_eye] +synonym: "parietal eye" EXACT [http://en.wikipedia.org/wiki/Parietal_eye] +synonym: "third eye" RELATED [http://en.wikipedia.org/wiki/Parietal_eye] +xref: Parietal:eye +is_a: UBERON:0003103 {source="cjm"} ! compound organ +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0015238 {source="cjm"} ! pineal complex + +[Term] +id: UBERON:0004870 +name: superficial cervical lymph node +def: "A group of nodes lying along the external jugular vein; they drain the skin and superficial structures over the region of the sternocleidomastoid muscle and anterior cervical regions. Efferent vessels drain to the deep cervical lymph nodes. Lymph nodes can be further subdivided into anterior and lateral groupings." [CL:tm, http://en.wikipedia.org/wiki/Superficial_cervical_lymph_nodes, https://github.com/obophenotype/uberon/issues/5, ref:Stedmans] +synonym: "nodi lymphoidei cervicales" RELATED LATIN [http://en.wikipedia.org/wiki/Superficial_cervical_lymph_nodes] +synonym: "prescapular lymph node" RELATED [CL:tm] +xref: EMAPA:37725 {source="MA:th"} +xref: http://en.wikipedia.org/wiki/Superficial_cervical_lymph_nodes +xref: http://linkedlifedata.com/resource/umls/id/C0458297 +xref: http://www.snomedbrowser.com/Codes/Details/279144003 +xref: MA:0002886 +xref: NCIT:C33659 +xref: UMLS:C0458297 {source="ncithesaurus:Superficial_Cervical_Lymph_Node"} +is_a: UBERON:0002429 ! cervical lymph node +is_a: UBERON:0003968 {source="CL:tm"} ! peripheral lymph node +is_a: UBERON:0015917 ! superficial lymph node +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan +relationship: dubious_for_taxon NCBITaxon:10090 {source="http://www.ncbi.nlm.nih.gov/pubmed/16624319"} + +[Term] +id: UBERON:0004871 +name: somatic layer of lateral plate mesoderm +def: "Layer of lateral plate mesoderm that forms the future body wall - underlies the ectoderm[WP]." [http://en.wikipedia.org/wiki/Lateral_plate_mesoderm#Division_into_layers] +subset: pheno_slim +synonym: "outer layer of lateral plate mesoderm" EXACT [] +synonym: "parietal mesoderm" RELATED [ISBN:9780878932504] +synonym: "somatic mesoderm" RELATED [BILA:0000047] +xref: AAO:0011100 +xref: BILA:0000047 +xref: Division_into_layers +xref: FMA:295570 +xref: XAO:0000271 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0003081 ! lateral plate mesoderm + +[Term] +id: UBERON:0004872 +name: splanchnic layer of lateral plate mesoderm +def: "Layer of lateral plate mesoderm that forms the circulatory system and future gut wall - overlies endoderm[WP]." [http://en.wikipedia.org/wiki/Lateral_plate_mesoderm#Division_into_layers] +subset: pheno_slim +synonym: "inner layer of lateral plate mesoderm" EXACT [] +synonym: "splanchnic mesoderm" RELATED [ISBN:9780878932504] +synonym: "visceral mesoderm" BROAD [BILA:0000044, http://www.drugs.com/dict/visceral-mesoderm.html, http://www.stedmans.com/] +xref: AAO:0011102 +xref: BILA:0000044 +xref: Division_into_layers +xref: FMA:295568 +xref: XAO:0000276 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0003081 ! lateral plate mesoderm + +[Term] +id: UBERON:0004873 +name: splanchnopleure +def: "A structure created during embryogenesis when the lateral mesoderm splits into two layers - the inner (or splanchnic) layer adheres to the endoderm, and with it forms the splanchnopleure[WP]." [http://en.wikipedia.org/wiki/Splanchnopleure] +synonym: "ventral splanchnic mesoderm" RELATED [http://en.wikipedia.org/wiki/Intraembryonic_coelom] +xref: EHDAA2:0001903 +xref: EHDAA:383 +xref: EMAPA:16181 +xref: FMA:295564 +xref: http://en.wikipedia.org/wiki/Splanchnopleure +xref: http://linkedlifedata.com/resource/umls/id/C1519472 +xref: NCIT:C34303 +xref: UMLS:C1519472 {source="ncithesaurus:Splanchnopleure"} +xref: VHOG:0000558 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0003081 {source="EHDAA2"} ! lateral plate mesoderm + +[Term] +id: UBERON:0004874 +name: somatopleure +def: "A structure created during embryogenesis when the lateral mesoderm splits into two layers - the outer (or somatic) layer becomes applied to the inner surface of the ectoderm, and with it forms the somatopleure.[WP]." [http://en.wikipedia.org/wiki/Somatopleure] +xref: EHDAA2:0001847 +xref: EHDAA:381 +xref: EMAPA:16180 +xref: FMA:295566 +xref: http://en.wikipedia.org/wiki/Somatopleure +xref: http://linkedlifedata.com/resource/umls/id/C1519423 +xref: NCIT:C34301 +xref: UMLS:C1519423 {source="ncithesaurus:Somatopleure"} +xref: VHOG:0000557 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0003081 {source="EHDAA2"} ! lateral plate mesoderm + +[Term] +id: UBERON:0004875 +name: nephrogenic cord +def: "A portion of the urogenital ridge which is the source of much of the urinary system[WP]." [http://en.wikipedia.org/wiki/Nephrogenic_cord] +comment: part_of or develops_from urogenital ridge? +synonym: "chorda nephrogenica" RELATED LATIN [http://en.wikipedia.org/wiki/Nephrogenic_cord] +xref: FMA:72168 +xref: http://linkedlifedata.com/resource/umls/id/C1283944 +xref: http://www.snomedbrowser.com/Codes/Details/361405003 +xref: NCIT:C34219 +xref: Nephrogenic:cord +xref: UMLS:C1283944 {source="ncithesaurus:Nephrogenic_Cord"} +is_a: UBERON:0002050 ! embryonic structure +relationship: develops_from UBERON:0004876 ! urogenital fold + +[Term] +id: UBERON:0004876 +name: urogenital fold +def: "One of of the pair of folds derived from the cloacal folds which give rise to a portion of the external genitalia; in male embryos they close over the urethral plate and fuse to form the spongy (penile) urethra and ventral aspect of the penis, not including the glans; failure of fusion of the urethral folds leads to hypospadias; in female embryos they fuse only anterior to the anus and form the labia minora[MP]." [http://en.wikipedia.org/wiki/Urogenital_folds, MP:0011835, MP:anna] +subset: pheno_slim +synonym: "urethral fold" EXACT [EMAPA:30888] +synonym: "urogenital fold" EXACT [EHDAA2:0004022, MP:0011835] +synonym: "urogenital ridge" RELATED INCONSISTENT [MP:0011835] +xref: EHDAA2:0004022 +xref: EMAPA:30888 +xref: FMA:321919 +xref: Urogenital:folds +is_a: UBERON:0006598 ! presumptive structure +relationship: develops_from UBERON:0003064 {source="Wikipedia"} ! intermediate mesoderm +relationship: develops_from UBERON:0012292 {source="EHDAA2"} ! embryonic cloacal fold +relationship: has_potential_to_develop_into UBERON:0004176 ! external genitalia +relationship: part_of UBERON:0009196 {source="EHDAA2"} ! indifferent external genitalia + +[Term] +id: UBERON:0004877 +name: visceral endoderm +def: "Visceral endoderm, a population of extraembyonic endoderm, is an extraembryonic tissue that functions in a regulatory capacity but does not contribute directly to the formation of any adult organs[PMID:15905405]. primitive endoderm-derived tissue which remains in contact with and surrounds the extra-embryonic ectoderm and the epiblast and provides signals for the differentiation and patterning of the epiblast; a small number of visceral endoderm cells also contribute to the endoderm of the embryonic gut[MP]." [http://www.ncbi.nlm.nih.gov/pubmed/15905405, MP:0011186] +subset: pheno_slim +xref: BTO:0003487 +xref: EMAPA:16058 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0005292 {source="BTO"} ! extraembryonic tissue + +[Term] +id: UBERON:0004878 +name: distal visceral endoderm +def: "precursors of the anterior visceral endoderm that arises at the distal tip of the embryo[MP]" [MP:0010126] +subset: pheno_slim +is_a: UBERON:0004877 ! visceral endoderm + +[Term] +id: UBERON:0004879 +name: marginal zone of embryo +def: "Belt-like region of presumptive mesoderm at the equator of the late blastula." [XAO:0000068] +subset: early_development +synonym: "margin" BROAD [ZFA:0000038] +synonym: "marginal zone" BROAD [XAO:0000068] +synonym: "margins" RELATED PLURAL [TAO:0000038] +xref: AAO:0010448 +xref: TAO:0000038 +xref: XAO:0000068 +xref: ZFA:0000038 +is_a: UBERON:0002050 ! embryonic structure + +[Term] +id: UBERON:0004880 +name: chordamesoderm +def: "The central region of trunk mesoderm. This tissue forms the notochord" [https://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +synonym: "axial chorda mesoderm" EXACT [ZFA:0000091] +synonym: "chorda mesoderm" EXACT [] +synonym: "dorsal mesoderm" EXACT [https://github.com/obophenotype/uberon/wiki/The-neural-crest] +synonym: "presumptive notochord" EXACT [ZFA:0000091] +xref: AAO:0000478 +xref: EFO:0003426 +xref: TAO:0000091 +xref: ZFA:0000091 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0003068 ! axial mesoderm + +[Term] +id: UBERON:0004882 +name: eponychium +def: "Thickened layer of skin surrounding fingernails and toenails. Beneath the cuticle is a thin layer of a membrane known as the pterygium. The function is to protect the area between the nail and epidermis from exposure to harmful bacteria. The vascularization pattern is similar to that of perionychium. The eponychium is the end of the proximal fold that folds back upon itself to shed an epidermal layer of skin onto the newly formed nail plate. This layer of non-living, almost invisible skin is the cuticle that 'rides out' on the surface of the nail plate. Together, the eponychium and the cuticle form a protective seal. The cuticle on the nail plate is dead cells and is often removed during manicure, but the eponychium is living cells and should not be touched.[6] The perionyx is the projecting edge of the eponychium covering the proximal strip of the lunula[WP]." [http://en.wikipedia.org/wiki/Eponychium] +synonym: "cuticle" RELATED [MA:0002704] +xref: EMAPA:37507 {source="MA:th"} +xref: FMA:77859 +xref: http://en.wikipedia.org/wiki/Eponychium +xref: http://www.snomedbrowser.com/Codes/Details/24631007 +xref: MA:0002704 +is_a: UBERON:0010371 ! ecto-epithelium +relationship: part_of UBERON:0001003 ! skin epidermis +relationship: surrounds UBERON:0001705 ! nail + +[Term] +id: UBERON:0004883 +name: lung mesenchyme +def: "The mass of tissue made up of mesenchymal cells in the lung." [GO:0060484] +subset: pheno_slim +synonym: "lung-associated mesenchyme" EXACT [GO:0060484] +synonym: "mesenchyme of lung" EXACT [OBOL:automatic] +synonym: "pulmonary mesenchyme" EXACT [GO:0060484] +xref: EMAPA:32866 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0003104 ! mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0002048 ! lung +relationship: develops_from UBERON:0003081 ! lateral plate mesoderm +relationship: part_of UBERON:0002048 ! lung + +[Term] +id: UBERON:0004884 +name: lobar bronchus mesenchyme +def: "The mass of tissue composed of mesenchymal cells in the lobar bronchus.." [GO:0060483] +synonym: "mesenchyme of lobar bronchus" EXACT [OBOL:automatic] +xref: EMAPA:32698 +is_a: UBERON:0004883 ! lung mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0002183 ! lobar bronchus +relationship: part_of UBERON:0002183 ! lobar bronchus + +[Term] +id: UBERON:0004885 +name: hilum +alt_id: UBERON:0004460 +def: "An anatomical cavity, depression or pit where structures are attached." [http://en.wikipedia.org/wiki/Hilum_of_kidney_of_lung_of_lymph_node] +synonym: "hilus" EXACT [http://en.wikipedia.org/wiki/Hilum] +xref: FMA:57836 +xref: galen:Hilum +xref: http://en.wikipedia.org/wiki/Hilum_of_kidney_of_lung_of_lymph_node +xref: http://linkedlifedata.com/resource/umls/id/C0929176 +xref: NCIT:C73467 +xref: UMLS:C0929176 {source="ncithesaurus:Hilum"} +is_a: UBERON:0016566 ! pit + +[Term] +id: UBERON:0004886 +name: lung hilus +def: "A depression on the surface of the lung where the bronchus, blood vessels and nerves enter." [GOC:lung_mtg, ISBN:0721662544] +synonym: "hilum of lung" EXACT [] +synonym: "hilum pulmonis" EXACT LATIN [FMA:7330, FMA:TA] +synonym: "hilus of lung" EXACT [OBOL:automatic] +synonym: "lung hilum" EXACT [OBOL:automatic] +synonym: "pulmonary hilum" EXACT [FMA:7330] +synonym: "pulmonary hilus" EXACT [OBOL:automatic] +xref: EMAPA:36005 +xref: FMA:7330 +xref: http://en.wikipedia.org/wiki/Hilum_of_lung +xref: http://linkedlifedata.com/resource/umls/id/C0225701 +xref: http://www.snomedbrowser.com/Codes/Details/264017007 +xref: MA:0003099 +xref: NCIT:C49282 +xref: UMLS:C0225701 {source="ncithesaurus:Hilar_Area_of_the_Lung"} +is_a: UBERON:0004885 ! hilum +intersection_of: UBERON:0004885 ! hilum +intersection_of: part_of UBERON:0002048 ! lung +relationship: part_of UBERON:0002048 ! lung + +[Term] +id: UBERON:0004887 +name: left lung hilus +def: "A lung hilus that is part of the left lung." [OBOL:automatic] +synonym: "hilum of left lung" EXACT [] +synonym: "hilus of left lung" EXACT [OBOL:automatic] +synonym: "left lung hilum" EXACT [OBOL:automatic] +synonym: "left pulmonary hilum" EXACT [FMA:9751] +synonym: "left pulmonary hilus" EXACT [OBOL:automatic] +xref: EHDAA2:0000962 +xref: EHDAA:4965 +xref: EMAPA:17980 +xref: FMA:9751 +xref: http://www.snomedbrowser.com/Codes/Details/361983000 +xref: MA:0001781 +xref: VHOG:0000483 +is_a: UBERON:0004886 ! lung hilus +intersection_of: UBERON:0004886 ! lung hilus +intersection_of: part_of UBERON:0002168 ! left lung +relationship: part_of UBERON:0002168 ! left lung + +[Term] +id: UBERON:0004888 +name: right lung hilus +def: "A lung hilus that is part of the right lung." [OBOL:automatic] +synonym: "hilum of right lung" EXACT [] +synonym: "hilus of right lung" EXACT [OBOL:automatic] +synonym: "right lung hilum" EXACT [OBOL:automatic] +synonym: "right pulmonary hilum" EXACT [FMA:7330] +synonym: "right pulmonary hilus" EXACT [OBOL:automatic] +xref: EHDAA2:0001756 +xref: EHDAA:4995 +xref: EMAPA:17996 +xref: FMA:7456 +xref: http://www.snomedbrowser.com/Codes/Details/361968005 +xref: MA:0001790 +xref: VHOG:0000482 +is_a: UBERON:0004886 ! lung hilus +intersection_of: UBERON:0004886 ! lung hilus +intersection_of: part_of UBERON:0002167 ! right lung +relationship: part_of UBERON:0002167 ! right lung + +[Term] +id: UBERON:0004889 +name: lobar bronchus vasculature +def: "Vasculature that is composed of the tubule structures that carry blood or lymph in the lungs" [LG:0012616] +is_a: UBERON:0000102 ! lung vasculature +intersection_of: UBERON:0002049 ! vasculature +intersection_of: part_of UBERON:0002183 ! lobar bronchus +relationship: part_of UBERON:0002183 ! lobar bronchus + +[Term] +id: UBERON:0004890 +name: right lung accessory lobe +def: "A specialized lobe of the right lung that extends to the left side of the organism" [LG:0012619] +subset: pheno_slim +synonym: "diaphragmatic lobe" NARROW [ISBN:0123813611] +synonym: "intermediate lobe of right lung" NARROW [ISBN:0123813611] +synonym: "right lung postcaval lobe" EXACT [MA:0000427] +xref: EHDAA2:0001731 +xref: EHDAA:4971 +xref: EMAPA:17981 +xref: MA:0000427 +xref: VHOG:0000831 +is_a: UBERON:0006518 ! right lung lobe +relationship: contributes_to_morphology_of UBERON:0002167 ! right lung + +[Term] +id: UBERON:0004891 +name: obsolete lobar bronchus bronchiole +is_obsolete: true + +[Term] +id: UBERON:0004892 +name: lobar bronchus alveolar system +def: "The lobar bronchus alveolar system is where molecules of oxygen and carbon dioxide are passively exchanged, by diffusion, between the gaseous environment and the blood in the lobar bronchus" [LG:0012622] +is_a: UBERON:0000467 ! anatomical system +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: part_of UBERON:0002183 ! lobar bronchus + +[Term] +id: UBERON:0004893 +name: interalveolar septum +def: "A the thin septum that separates adjacent pulmonary alveoli, containing connective tissue constituents of the respiratory tissue and the capillary network of the blood supply of the lung." [http://en.wikipedia.org/wiki/Alveolar_septum, LG:0012625] +subset: pheno_slim +synonym: "alveolar septum" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "septum interalveolare" RELATED [BTO:0003149] +xref: Alveolar:septum +xref: BTO:0003149 +xref: EMAPA:35433 +xref: http://linkedlifedata.com/resource/umls/id/C1706784 +xref: MA:0000421 +xref: NCIT:C49473 +xref: UMLS:C1706784 {source="ncithesaurus:Alveolar_Septum"} +is_a: UBERON:0003037 ! septum +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0003037 ! septum +intersection_of: adjacent_to UBERON:0002299 ! alveolus of lung +relationship: adjacent_to UBERON:0002299 ! alveolus of lung +relationship: part_of UBERON:0006524 ! alveolar system + +[Term] +id: UBERON:0004894 +name: alveolar wall +alt_id: UBERON:0008872 +def: "A wall that contains the alveoli" [LG:0012626, MP:0010903] +subset: pheno_slim +synonym: "alveolus wall" RELATED [EMAPA:35120] +synonym: "pulmonary alveolar wall" EXACT [FMA:14117] +synonym: "pulmonary interalveolar septum" EXACT [FMA:14117] +synonym: "wall of pulmonary alveolus" EXACT [FMA:14117] +xref: BTO:0002543 +xref: EMAPA:35120 +xref: FMA:14117 +xref: http://linkedlifedata.com/resource/umls/id/C0225695 +xref: http://www.snomedbrowser.com/Codes/Details/361965008 +xref: MA:0002568 +xref: NCIT:C13085 +xref: UMLS:C0225695 {source="ncithesaurus:Alveolar_Wall"} +is_a: UBERON:0000060 ! anatomical wall +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0002299 ! alveolus of lung +relationship: contributes_to_morphology_of UBERON:0002299 ! alveolus of lung +relationship: part_of UBERON:0002299 ! alveolus of lung + +[Term] +id: UBERON:0004895 +name: alveolar smooth muscle +def: "Alveolar smooth muscle is a type of non-striated muscle, found within the walls of the alveolus" [LG:0012628] +xref: EMAPA:35122 +xref: MA:0002759 +is_a: UBERON:0004233 ! lower respiratory tract smooth muscle +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0002299 ! alveolus of lung +relationship: part_of UBERON:0002299 ! alveolus of lung + +[Term] +id: UBERON:0004896 +name: right lung accessory lobe lobar bronchus +def: "The right lung accessory lobe lobar bronchus is the major airway within the right lung accessory lobe that starts at the division of the bronchus on the right side and ends at the point of its own subdivision into tertiary or segmental bronchi" [LG:0012636] +synonym: "lobar bronchus of accessory lobe" BROAD [EMAPA:17982] +synonym: "lobar bronchus of right lung accessory lobe" EXACT [VHOG:0000239] +xref: EHDAA2:0001736 +xref: EMAPA:17982 +xref: VHOG:0000239 +is_a: UBERON:0003404 ! lobar bronchus of right lung +intersection_of: UBERON:0002183 ! lobar bronchus +intersection_of: part_of UBERON:0004890 ! right lung accessory lobe +relationship: part_of UBERON:0004890 ! right lung accessory lobe + +[Term] +id: UBERON:0004897 +name: right lung accessory lobe lobar bronchus mesenchyme +def: "The right lung accessory lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung accessory lobe lobar bronchus" [LG:0012640] +xref: EMAPA:17983 +is_a: UBERON:0004901 ! right lung lobar bronchus mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0003404 ! lobar bronchus of right lung +intersection_of: part_of UBERON:0004890 ! right lung accessory lobe +relationship: part_of UBERON:0003404 ! lobar bronchus of right lung +relationship: part_of UBERON:0004890 ! right lung accessory lobe + +[Term] +id: UBERON:0004898 +name: obsolete right lung caudal lobe lobar bronchus mesenchyme +is_obsolete: true + +[Term] +id: UBERON:0004899 +name: right lung cranial lobe lobar bronchus mesenchyme +def: "The right lung cranial lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung cranial lobe lobar bronchus" [LG:0012659] +xref: EMAPA:17993 +is_a: UBERON:0004901 ! right lung lobar bronchus mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0002170 ! upper lobe of right lung +intersection_of: part_of UBERON:0003404 ! lobar bronchus of right lung +relationship: part_of UBERON:0002170 ! upper lobe of right lung +relationship: part_of UBERON:0003404 ! lobar bronchus of right lung + +[Term] +id: UBERON:0004900 +name: right lung middle lobe lobar bronchus mesenchyme +def: "The right lung middle lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung middle lobe lobar bronchus" [LG:0012672] +xref: EMAPA:17999 +is_a: UBERON:0004901 ! right lung lobar bronchus mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0002174 ! middle lobe of right lung +intersection_of: part_of UBERON:0003404 ! lobar bronchus of right lung +relationship: part_of UBERON:0002174 ! middle lobe of right lung +relationship: part_of UBERON:0003404 ! lobar bronchus of right lung + +[Term] +id: UBERON:0004901 +name: right lung lobar bronchus mesenchyme +def: "The right lung lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung lobar bronchus" [LG:0012681] +xref: EMAPA:17665 +is_a: UBERON:0004884 ! lobar bronchus mesenchyme +is_a: UBERON:0009603 ! right lung associated mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0002167 ! right lung +intersection_of: part_of UBERON:0002183 ! lobar bronchus + +[Term] +id: UBERON:0004902 +name: urogenital sinus epithelium +def: "The fetal urogenital sinus (from which the prostate derives) is a simple cylinder of stratified basal epithelium, surrounded by mesenchyme and positioned between the embryonic bladder and pelvic urethra" [http://www.ncbi.nlm.nih.gov/pubmed/18977204] +synonym: "epithelium of urogenital sinus" EXACT [OBOL:automatic] +synonym: "UGE" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/18977204] +xref: EHDAA2:0004061 +xref: EMAPA:31509 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0009846 ! embryonic cloacal epithelium +is_a: UBERON:0012275 ! meso-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000164 ! primitive urogenital sinus +relationship: part_of UBERON:0000164 ! primitive urogenital sinus + +[Term] +id: UBERON:0004903 +name: bronchoalveolar duct junction +def: "A branch point connecting the respiratory bronchioles to the alveolar ducts[MP]." [MP:0004390] +subset: pheno_slim +xref: EMAPA:37448 {source="MA:th"} +is_a: UBERON:0007651 ! anatomical junction +relationship: connects UBERON:0002173 ! pulmonary alveolar duct +relationship: connects UBERON:0002188 ! respiratory bronchiole +relationship: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0004904 +name: neuron projection bundle connecting eye with brain +def: "A neuron projection bundle that connects the retina or its analog in the eye with the brain. This includes the vertebrate optic nerve (not truly a nerve) as well as analogous structures such as the Bolwig nerve in Drosophila" [http://orcid.org/0000-0002-6601-2165] +comment: for the vertebrate-specific structure, see UBERON:0000941 (cranial nerve II) +subset: grouping_class +subset: pheno_slim +synonym: "optic nerve" BROAD [BTO:0000966] +synonym: "optic nerve (generic)" EXACT [] +xref: BTO:0000966 +xref: EV:0100351 +xref: FBbt:00001956 +xref: TADS:0000232 +is_a: UBERON:0000122 ! neuron projection bundle +intersection_of: UBERON:0000122 ! neuron projection bundle +intersection_of: extends_fibers_into UBERON:0000955 ! brain +intersection_of: extends_fibers_into UBERON:0005388 ! photoreceptor array +relationship: extends_fibers_into UBERON:0000955 ! brain +relationship: extends_fibers_into UBERON:0005388 ! photoreceptor array +relationship: part_of UBERON:0002104 ! visual system + +[Term] +id: UBERON:0004905 +name: articulation +def: "Anatomical cluster that connects two or more adjacent skeletal elements or hardened body parts." [http://orcid.org/0000-0002-6601-2165] +subset: grouping_class +synonym: "joint" NARROW [] +xref: FBbt:00005811 +is_a: UBERON:0034921 ! multi organ part structure +relationship: part_of UBERON:0004770 ! articular system + +[Term] +id: UBERON:0004906 +name: ectodermal part of digestive tract +def: "A portion of the gut that is derived from ectoderm." [GO:0007439] +synonym: "ectodermal gut" EXACT [] +synonym: "gut ectoderm" EXACT [EMAPA:32930] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004921 ! subdivision of digestive tract +intersection_of: UBERON:0004921 ! subdivision of digestive tract +intersection_of: develops_from UBERON:0000924 ! ectoderm +intersection_of: part_of UBERON:0001555 ! digestive tract + +[Term] +id: UBERON:0004907 +name: lower digestive tract +def: "The region of the digestive tract extending from the beginning of the intestines to the anus[GO - gut definition]." [http://en.wikipedia.org/wiki/Alimentary_canal#Upper_gastrointestinal_tract] +subset: uberon_slim +synonym: "gut" BROAD [GO:0048565] +synonym: "lower gastrointestinal tract" EXACT [] +synonym: "lower GI tract" EXACT [] +xref: FMA:49179 +xref: galen:LowerGastrointestinalTract +xref: http://linkedlifedata.com/resource/umls/id/C0226875 +xref: http://www.snomedbrowser.com/Codes/Details/279973004 +xref: NCIT:C33010 +xref: UMLS:C0226875 {source="ncithesaurus:Lower_Gastrointestinal_Tract"} +xref: Upper_gastrointestinal_tract +is_a: UBERON:0004921 ! subdivision of digestive tract +relationship: develops_from UBERON:0001046 ! hindgut +relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system + +[Term] +id: UBERON:0004908 +name: upper digestive tract +def: "The region of the digestive tract extending from the mouth cavity through pharynx esophagus stomach and duodenum." [http://en.wikipedia.org/wiki/Alimentary_canal#Upper_gastrointestinal_tract] +subset: uberon_slim +synonym: "upper gastrointestinal tract" EXACT [] +synonym: "upper GI tract" EXACT [] +xref: FMA:49177 +xref: galen:UpperGastrointestinalTract +xref: http://linkedlifedata.com/resource/umls/id/C0226874 +xref: http://www.snomedbrowser.com/Codes/Details/181244000 +xref: NCIT:C33837 +xref: UMLS:C0226874 {source="ncithesaurus:Upper_Gastrointestinal_Tract"} +xref: Upper_gastrointestinal_tract +is_a: UBERON:0004921 ! subdivision of digestive tract +relationship: develops_from UBERON:0001041 ! foregut + +[Term] +id: UBERON:0004909 +name: epithelium of gonad +def: "An epithelium surrounding a gonad." [OBOL:automatic] +synonym: "gonad epithelium" EXACT [OBOL:automatic] +synonym: "gonadal epithelium" EXACT [OBOL:automatic] +synonym: "gonadal sheath" RELATED [FBbt:00004859] +xref: EHDAA:4032 +xref: EHDAA:5931 +xref: FBbt:00004859 +xref: http://linkedlifedata.com/resource/umls/id/C1517534 +xref: NCIT:C32676 +xref: UMLS:C1517534 {source="ncithesaurus:Germinal_Epithelium"} +is_a: UBERON:0000483 ! epithelium +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000991 ! gonad +relationship: part_of UBERON:0000991 ! gonad + +[Term] +id: UBERON:0004910 +name: epithelium of male gonad +def: "An epithelium surrounding a testis." [OBOL:automatic] +synonym: "testis epithelium" EXACT [OBOL:automatic] +synonym: "testis sheath" NARROW SENSU [FBbt:00004955] +xref: BTO:0001364 +xref: EMAPA:17973 +xref: FBbt:00004955 +is_a: UBERON:0004909 ! epithelium of gonad +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000473 ! testis +relationship: part_of UBERON:0000473 ! testis + +[Term] +id: UBERON:0004911 +name: epithelium of female gonad +def: "An epithelium surrounding an ovary." [OBOL:automatic] +synonym: "ovarian epithelium" EXACT [OBOL:automatic] +synonym: "ovarian sheath" NARROW SENSU [FBbt:00004896] +synonym: "ovary epithelium" EXACT [OBOL:automatic] +xref: BTO:0003661 +xref: FBbt:00004896 +is_a: UBERON:0004909 ! epithelium of gonad +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000992 ! ovary +relationship: part_of UBERON:0000992 ! ovary + +[Term] +id: UBERON:0004912 +name: biliary bud +synonym: "hepatic diverticulum" RELATED [EMAPA:16561] +xref: EHDAA2:0000171 +xref: EMAPA:16561 +xref: EMAPA_RETIRED:16565 +xref: VHOG:0001351 +is_a: UBERON:0004185 ! endodermal part of digestive tract +is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac +is_a: UBERON:0009497 ! epithelium of foregut-midgut junction +is_a: UBERON:0009854 ! digestive tract diverticulum +relationship: develops_from UBERON:0004161 {source="EHDAA2-modified"} ! septum transversum +relationship: part_of UBERON:0002423 {source="EHDAA2"} ! hepatobiliary system + +[Term] +id: UBERON:0004913 +name: hepatopancreatic ampulla +def: "A dilation of the duodenal papilla that is the opening of the juncture of the common bile duct and the main pancreatic duct." [http://en.wikipedia.org/wiki/Ampulla_of_Vater] +subset: vertebrate_core +synonym: "ampulla biliaropancreatica" EXACT LATIN [FMA:15076, FMA:TA] +synonym: "ampulla hepatopancreatica" RELATED LATIN [http://en.wikipedia.org/wiki/Ampulla_of_Vater] +synonym: "ampulla of bile duct" EXACT [FMA:15076] +synonym: "ampulla of Vater" EXACT [] +synonym: "ampulla Vaterii" RELATED LATIN [http://en.wikipedia.org/wiki/Ampulla_of_Vater] +synonym: "biliaropancreatic ampulla" EXACT [] +synonym: "papilla duodeni major" RELATED [ZFA:0005167] +synonym: "papilla Vateri" EXACT [ZFA:0005167] +synonym: "Vater's ampulla" EXACT [] +xref: CALOHA:TS-2348 +xref: FMA:15076 +xref: GAID:283 +xref: galen:AmpullaOfVater +xref: http://en.wikipedia.org/wiki/Ampulla_of_Vater +xref: http://linkedlifedata.com/resource/umls/id/C0042425 +xref: http://www.snomedbrowser.com/Codes/Details/362200007 +xref: MESH:A03.159.183.079.300.900 +xref: NCIT:C13011 +xref: TAO:0005167 +xref: UMLS:C0042425 {source="ncithesaurus:Ampulla_of_Vater"} +xref: ZFA:0005167 +is_a: UBERON:0002394 ! bile duct +intersection_of: UBERON:0000058 ! duct +intersection_of: part_of UBERON:0001174 ! common bile duct +intersection_of: part_of UBERON:0004914 ! duodenal papilla +relationship: part_of UBERON:0001174 ! common bile duct +relationship: part_of UBERON:0004914 ! duodenal papilla + +[Term] +id: UBERON:0004914 +name: duodenal papilla +def: "One of the two small elevations on the mucosa of the duodenum, the major at the entrance of the conjoined pancreatic and common bile ducts and the minor at the entrance of the accessory pancreatic duct." [http://medical-dictionary.thefreedictionary.com/duodenal+papilla] +synonym: "papilla duodenalis" EXACT [] +synonym: "papilla duodeni" RELATED LATIN [http://en.wikipedia.org/wiki/Major_duodenal_papilla] +synonym: "papilla of duodenum" EXACT [] +xref: EMAPA:18662 +xref: FMA:15953 +xref: http://www.snomedbrowser.com/Codes/Details/245389007 +xref: MA:0003107 +xref: NCIT:C119578 +is_a: UBERON:0034944 ! zone of organ +relationship: part_of UBERON:0000320 ! duodenal mucosa + +[Term] +id: UBERON:0004915 +name: sphincter of hepatopancreatic ampulla +def: "muscular valve that controls the flow of digestive juices (bile and pancreatic juice) through the ampulla of Vater into the second part of the duodenum. Relaxed by the hormone Cholecystokinin (CCK) via vasoactive intestinal polypeptide (VIP).[WP]." [http://en.wikipedia.org/wiki/Sphincter_of_ampulla] +synonym: "hepatopancreatic ampullary sphincter" EXACT [FMA:15077] +synonym: "musculus sphincter ampullae" EXACT [FMA:15077] +synonym: "musculus sphincter ampullae hepatopancreatica" EXACT LATIN [FMA:15077, FMA:TA] +synonym: "Oddi's sphincter" EXACT [] +synonym: "sphincter of ampulla of vater" EXACT [FMA:15077] +synonym: "sphincter of Oddi" EXACT [] +xref: EMAPA:18663 +xref: FMA:15077 +xref: GAID:285 +xref: http://en.wikipedia.org/wiki/Sphincter_of_ampulla +xref: http://linkedlifedata.com/resource/umls/id/C0028872 +xref: http://www.snomedbrowser.com/Codes/Details/181271000 +xref: MESH:A03.159.183.079.300.900.600 +xref: NCIT:C13065 +xref: UMLS:C0028872 {source="ncithesaurus:Sphincter_of_Oddi"} +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0011185 ! gastrointestinal sphincter +intersection_of: UBERON:0004590 ! sphincter muscle +intersection_of: part_of UBERON:0004913 ! hepatopancreatic ampulla +relationship: part_of UBERON:0004913 ! hepatopancreatic ampulla + +[Term] +id: UBERON:0004916 +name: anal sphincter +def: "A sphincter muscle that is part of a anal region." [OBOL:automatic] +synonym: "anal region sphincter" EXACT [] +synonym: "sphincter analia" EXACT [] +xref: EMAPA:36052 +is_a: UBERON:0004590 ! sphincter muscle +intersection_of: UBERON:0004590 ! sphincter muscle +intersection_of: part_of UBERON:0001353 ! anal region +relationship: part_of UBERON:0001353 ! anal region + +[Term] +id: UBERON:0004917 +name: urethral sphincter +def: "A sphincter muscle surrounding the urethra." [http://en.wikipedia.org/wiki/Urethral_sphincter] +synonym: "sphincter muscle of urethra" EXACT [] +synonym: "sphincter of urethra" EXACT [] +synonym: "sphincter urethrae" EXACT [] +synonym: "urethral sphincter muscle" EXACT [] +xref: EMAPA:37789 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/277855007 +xref: http://www.snomedbrowser.com/Codes/Details/277857004 +xref: MA:0002650 +xref: Urethral:sphincter +is_a: UBERON:0003829 ! urethra muscle tissue +is_a: UBERON:0004590 ! sphincter muscle +intersection_of: UBERON:0004590 ! sphincter muscle +intersection_of: part_of UBERON:0000057 ! urethra + +[Term] +id: UBERON:0004918 +name: internal urethral sphincter +def: "A urethral sphincter muscle which constricts the internal urethral orifice. It is the junction of the urethra with the urinary bladder. The muscle is made of smooth muscle, so therefore it is under involuntary control. It is kept tonically contracted by the sympathetic nervous system and during micturition, is relaxed via the parasympathetic nervous system. This is the primary muscle for preventing the release of urine[WP]." [http://en.wikipedia.org/wiki/Internal_sphincter_muscle_of_urethra] +synonym: "internal sphincter muscle of urethra" EXACT [] +synonym: "internal sphincter of urethra" EXACT [] +synonym: "internal urethral sphincter muscle" EXACT [] +synonym: "musculus sphincter supracollicularis" EXACT LATIN [FMA:45769, FMA:TA] +synonym: "musculus sphincter urethrae internus" EXACT LATIN [FMA:45769, FMA:TA] +synonym: "musculus sphincter urethrae internus" RELATED LATIN [http://en.wikipedia.org/wiki/Internal_sphincter_muscle_of_urethra] +synonym: "preprostatic sphincter" EXACT [FMA:45769] +synonym: "sphincter urethrae internus" EXACT LATIN [FMA:45769, FMA:TA] +synonym: "supracollicular sphincter" EXACT [FMA:45769] +xref: FMA:45769 +xref: http://en.wikipedia.org/wiki/Internal_sphincter_muscle_of_urethra +xref: http://www.snomedbrowser.com/Codes/Details/277856008 +is_a: UBERON:0004917 ! urethral sphincter +relationship: innervated_by UBERON:0002013 {notes="Sympathetics from L1-L2 through lumbar splanchnic and hypogastric/pelvic plexus", source="dbpedia"} ! superior hypogastric nerve plexus +relationship: innervated_by UBERON:0005303 {notes="Sympathetics from L1-L2 through lumbar splanchnic and hypogastric/pelvic plexus", source="dbpedia"} ! hypogastric nerve + +[Term] +id: UBERON:0004919 +name: external urethral sphincter +def: "." [http://en.wikipedia.org/wiki/External_sphincter_muscle_of_female_urethra, http://en.wikipedia.org/wiki/External_sphincter_muscle_of_male_urethra] +synonym: "annulus urethralis" EXACT [] +synonym: "external sphincter muscle of urethra" EXACT [] +synonym: "external sphincter of urethra" EXACT [] +synonym: "external urethral sphincter muscle" EXACT [] +synonym: "m. urethralis" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/9879823] +synonym: "musculus sphincter urethrae membranaceae" RELATED LATIN [http://en.wikipedia.org/wiki/External_sphincter_muscle_of_male_urethra] +synonym: "urethralis" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/9879823, MA:0002401] +synonym: "urethralis muscle" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/9879823] +xref: EMAPA:37790 {source="MA:th"} +xref: FMA:85274 +xref: http://linkedlifedata.com/resource/umls/id/C1710586 +xref: http://www.snomedbrowser.com/Codes/Details/19101001 +xref: MA:0002401 +xref: NCIT:C52561 +xref: UMLS:C1710586 {source="ncithesaurus:Urethralis"} +is_a: UBERON:0004917 ! urethral sphincter +relationship: has_muscle_origin UBERON:0001274 {notes="Junction of the inferior rami of the pubis and ischium to the extent of 1.25 to 2 cm.", source="dbpedia"} ! ischium +relationship: has_muscle_origin UBERON:0001275 {notes="Junction of the inferior rami of the pubis and ischium to the extent of 1.25 to 2 cm.", source="dbpedia"} ! pubis + +[Term] +id: UBERON:0004920 +name: obsolete mesoderm of gonad +def: "A mesoderm that is part of a gonad [Automatically generated definition]." [OBOL:automatic] +synonym: "gonad mesoderm" EXACT [OBOL:automatic] +synonym: "gonadal mesoderm" EXACT [OBOL:automatic] +is_obsolete: true + +[Term] +id: UBERON:0004921 +name: subdivision of digestive tract +def: "A proximal-distal subdivision of the digestive tract." [http://orcid.org/0000-0002-6601-2165] +subset: non_informative +synonym: "alimentary system subdivision" RELATED [FMA:71131] +synonym: "intestinal tract" RELATED [] +synonym: "segment of intestinal tract" RELATED [] +synonym: "subdivision of alimentary system" RELATED [FMA:71131] +xref: FBbt:00100315 +xref: FMA:71131 +is_a: UBERON:0013522 ! subdivision of tube +intersection_of: UBERON:0013522 ! subdivision of tube +intersection_of: subdivision_of UBERON:0001555 ! digestive tract +relationship: part_of UBERON:0001555 ! digestive tract +relationship: subdivision_of UBERON:0001555 ! digestive tract + +[Term] +id: UBERON:0004922 +name: postnatal subventricular zone +def: "A mitotically active layer of cells surrounding the brain ventricles in the adult that consists of migrating neuroblasts, astrocytes and transitory amplifying progenitor cells[MP]." [MP:0004275] +subset: pheno_slim +synonym: "adult subventricular zone" EXACT [MP:0004275] +synonym: "brain subventricular zone" EXACT [MA:0000817] +synonym: "postnatal subependymal layer" RELATED [] +synonym: "postnatal subependymal plate" RELATED [] +synonym: "postnatal subependymal zone" RELATED [] +synonym: "postnatal subventricular zone" EXACT [MP:0004275] +synonym: "SEZ" EXACT ABBREVIATION [MP:0004275] +synonym: "subependymal layer" RELATED [MP:0004275] +synonym: "subependymal plate" RELATED [MP:0004275] +synonym: "subependymal zone" RELATED [MP:0004275] +synonym: "subventricular zone" EXACT [MA:0000817] +synonym: "subventricular zone of brain" EXACT [] +synonym: "SVZ" EXACT ABBREVIATION [MP:0004275] +xref: BAMS:SEL +xref: BAMS:SEZ +xref: BTO:0003090 +xref: DHBA:10536 +xref: EMAPA:32804 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1901 +xref: MA:0000817 +xref: MBA:98 +xref: NLX:144262 +xref: PBA:294021970 +xref: Subventricular:zone +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +relationship: develops_from UBERON:0004023 ! ganglionic eminence +relationship: part_of UBERON:0001890 {source="GO"} ! forebrain +relationship: part_of UBERON:0009953 ! post-embryonic organism + +[Term] +id: UBERON:0004923 +name: organ component layer +def: "A part of a wall of an organ that forms a layer." [http://orcid.org/0000-0002-6601-2165] +subset: upper_level +xref: FMA:82485 +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0000060 ! anatomical wall + +[Term] +id: UBERON:0004924 +name: submucosa of pharynx +def: "The tissue underlying the tunica mucosa of the pharynx." [BTO:0002113] +synonym: "pharyngeal submucosa" EXACT [FMA:75144] +synonym: "pharyngobasilar fascia" RELATED [] +synonym: "pharynx submucosa" EXACT [OBOL:automatic] +synonym: "submucous coat of pharynx" RELATED [BTO:0002113] +synonym: "submucous layer of pharynx" RELATED [BTO:0002113] +synonym: "tela submucosa pharyngea" EXACT LATIN [FMA:75144, FMA:TA] +synonym: "tela submucosa pharyngis" EXACT LATIN [BTO:0002113] +xref: BTO:0002113 +xref: FMA:75144 +xref: http://www.snomedbrowser.com/Codes/Details/19594009 +is_a: UBERON:0004777 ! respiratory system submucosa +is_a: UBERON:0018257 ! submucosa of digestive tract +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001042 ! chordate pharynx +relationship: part_of UBERON:0001042 ! chordate pharynx + +[Term] +id: UBERON:0004925 +name: submucosa of laryngopharynx +def: "A submucosa that is part of a hypopharynx [Automatically generated definition]." [OBOL:automatic] +synonym: "hypopharynx submucosa" EXACT [OBOL:automatic] +synonym: "laryngeal pharynx submucosa" EXACT [OBOL:automatic] +synonym: "laryngopharynx submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of hypopharynx" EXACT [OBOL:automatic] +synonym: "submucosa of laryngeal pharynx" EXACT [OBOL:automatic] +synonym: "tela submucosa (pars laryngea pharyngis)" EXACT [FMA:55072] +xref: FMA:55072 +xref: http://www.snomedbrowser.com/Codes/Details/47496006 +is_a: UBERON:0004924 ! submucosa of pharynx +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001051 ! hypopharynx +relationship: part_of UBERON:0001051 ! hypopharynx + +[Term] +id: UBERON:0004926 +name: submucosa of cystic duct +def: "A submucosa that is part of a cystic duct [Automatically generated definition]." [OBOL:automatic] +synonym: "cystic duct submucosa" EXACT [OBOL:automatic] +synonym: "cystic ductal submucosa" EXACT [FMA:18013] +xref: FMA:18013 +is_a: UBERON:0004938 ! submucosa of biliary tree +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001152 ! cystic duct +relationship: part_of UBERON:0001152 ! cystic duct + +[Term] +id: UBERON:0004927 +name: submucosa of cecum +def: "A submucosa that is part of a cecum [Automatically generated definition]." [OBOL:automatic] +synonym: "caecum submucosa" EXACT [OBOL:automatic] +synonym: "cecum submucosa" EXACT [OBOL:automatic] +synonym: "intestinum crassum caecum submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of caecum" EXACT [OBOL:automatic] +synonym: "submucosa of intestinum crassum caecum" EXACT [OBOL:automatic] +xref: FMA:14999 +is_a: UBERON:0003331 ! submucosa of colon +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001153 ! caecum +relationship: part_of UBERON:0001153 ! caecum + +[Term] +id: UBERON:0004928 +name: submucosa of appendix +def: "A submucosa that is part of an appendix [Automatically generated definition]." [OBOL:automatic] +synonym: "appendiceal submucosa" EXACT [FMA:14992] +synonym: "appendix submucosa" EXACT [OBOL:automatic] +synonym: "caecal appendix submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of caecal appendix" EXACT [OBOL:automatic] +synonym: "submucosa of vermiform appendix" EXACT [OBOL:automatic] +synonym: "submucosa of vermix" EXACT [OBOL:automatic] +synonym: "vermiform appendix submucosa" EXACT [OBOL:automatic] +synonym: "vermix submucosa" EXACT [OBOL:automatic] +xref: FMA:14992 +xref: http://www.snomedbrowser.com/Codes/Details/86833001 +is_a: UBERON:0004927 ! submucosa of cecum +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001154 ! vermiform appendix +relationship: part_of UBERON:0001154 ! vermiform appendix + +[Term] +id: UBERON:0004929 +name: submucosa of ascending colon +def: "A submucosa that is part of an ascending colon [Automatically generated definition]." [OBOL:automatic] +synonym: "ascending colon submucosa" EXACT [OBOL:automatic] +xref: FMA:15006 +is_a: UBERON:0003331 ! submucosa of colon +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001156 ! ascending colon +relationship: part_of UBERON:0001156 ! ascending colon + +[Term] +id: UBERON:0004930 +name: submucosa of transverse colon +def: "A submucosa that is part of a transverse colon [Automatically generated definition]." [OBOL:automatic] +synonym: "transverse colon submucosa" EXACT [OBOL:automatic] +xref: FMA:15013 +is_a: UBERON:0003331 ! submucosa of colon +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001157 ! transverse colon +relationship: part_of UBERON:0001157 ! transverse colon + +[Term] +id: UBERON:0004931 +name: submucosa of descending colon +def: "A submucosa that is part of a descending colon [Automatically generated definition]." [OBOL:automatic] +synonym: "descending colon submucosa" EXACT [OBOL:automatic] +xref: FMA:15020 +is_a: UBERON:0003331 ! submucosa of colon +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001158 ! descending colon +relationship: part_of UBERON:0001158 ! descending colon + +[Term] +id: UBERON:0004932 +name: submucosa of sigmoid colon +def: "A submucosa that is part of a sigmoid colon [Automatically generated definition]." [OBOL:automatic] +synonym: "sigmoid colon submucosa" EXACT [OBOL:automatic] +xref: FMA:15027 +is_a: UBERON:0003331 ! submucosa of colon +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001159 ! sigmoid colon +relationship: part_of UBERON:0001159 ! sigmoid colon + +[Term] +id: UBERON:0004933 +name: submucosa of fundus of stomach +def: "A submucosa that is part of a fundus of stomach [Automatically generated definition]." [OBOL:automatic] +synonym: "fundus gastricus (ventricularis) submucosa" EXACT [OBOL:automatic] +synonym: "fundus of stomach submucosa" EXACT [OBOL:automatic] +synonym: "stomach fundus submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of fundus gastricus (ventricularis)" EXACT [OBOL:automatic] +synonym: "submucosa of stomach fundus" EXACT [OBOL:automatic] +xref: EMAPA:27153 +xref: FMA:17058 +is_a: UBERON:0001200 ! submucosa of stomach +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001160 ! fundus of stomach +relationship: part_of UBERON:0001160 ! fundus of stomach + +[Term] +id: UBERON:0004934 +name: submucosa of body of stomach +def: "A submucosa that is part of a body of stomach [Automatically generated definition]." [OBOL:automatic] +synonym: "body of stomach submucosa" EXACT [OBOL:automatic] +synonym: "corpus gastricum (ventriculare) submucosa" EXACT [OBOL:automatic] +synonym: "gastric body submucosa" EXACT [OBOL:automatic] +synonym: "stomach body submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of corpus gastricum (ventriculare)" EXACT [OBOL:automatic] +synonym: "submucosa of gastric body" EXACT [OBOL:automatic] +synonym: "submucosa of stomach body" EXACT [OBOL:automatic] +xref: FMA:17059 +is_a: UBERON:0001200 ! submucosa of stomach +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001161 ! body of stomach +relationship: part_of UBERON:0001161 ! body of stomach + +[Term] +id: UBERON:0004935 +name: submucosa of cardia of stomach +def: "A submucosa that is part of a cardia of stomach [Automatically generated definition]." [OBOL:automatic] +synonym: "cardia of stomach submucosa" EXACT [OBOL:automatic] +synonym: "cardial part of stomach submucosa" EXACT [OBOL:automatic] +synonym: "gastric cardia submucosa" EXACT [OBOL:automatic] +synonym: "pars cardiaca (gaster) submucosa" EXACT [OBOL:automatic] +synonym: "stomach cardiac region submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of cardial part of stomach" EXACT [OBOL:automatic] +synonym: "submucosa of gastric cardia" EXACT [OBOL:automatic] +synonym: "submucosa of pars cardiaca (gaster)" EXACT [OBOL:automatic] +synonym: "submucosa of stomach cardiac region" EXACT [OBOL:automatic] +xref: FMA:17457 +is_a: UBERON:0001200 ! submucosa of stomach +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001162 ! cardia of stomach +relationship: part_of UBERON:0001162 ! cardia of stomach + +[Term] +id: UBERON:0004936 +name: submucosa of pyloric antrum +def: "A submucosa that is part of a pyloric antrum [Automatically generated definition]." [OBOL:automatic] +synonym: "antrum of stomach submucosa" EXACT [OBOL:automatic] +synonym: "pyloric antrum submucosa" EXACT [OBOL:automatic] +synonym: "stomach pyloric antrum submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of antrum of stomach" EXACT [OBOL:automatic] +synonym: "submucosa of stomach pyloric antrum" EXACT [OBOL:automatic] +xref: FMA:17060 +is_a: UBERON:0004937 ! submucosa of pylorus +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001165 ! pyloric antrum +relationship: part_of UBERON:0001165 ! pyloric antrum + +[Term] +id: UBERON:0004937 +name: submucosa of pylorus +def: "A submucosa that is part of a pylorus [Automatically generated definition]." [OBOL:automatic] +synonym: "pyloric part of stomach submucosa" EXACT [OBOL:automatic] +synonym: "pyloric submucosa" EXACT [] +synonym: "pylorus submucosa" EXACT [OBOL:automatic] +synonym: "pylorus submucosa" EXACT [FMA:17462] +synonym: "stomach pyloric region submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of pyloric part of stomach" EXACT [OBOL:automatic] +synonym: "submucosa of stomach pyloric region" EXACT [OBOL:automatic] +xref: EMAPA:27201 +xref: FMA:17462 +is_a: UBERON:0001200 ! submucosa of stomach +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001166 ! pylorus +relationship: part_of UBERON:0001166 ! pylorus + +[Term] +id: UBERON:0004938 +name: submucosa of biliary tree +def: "A submucosa that is part of a biliary tree [Automatically generated definition]." [OBOL:automatic] +synonym: "biliary tract submucosa" EXACT [OBOL:automatic] +synonym: "biliary tree submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of biliary tract" EXACT [OBOL:automatic] +xref: FMA:18009 +is_a: UBERON:0000009 ! submucosa +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001173 ! biliary tree +relationship: part_of UBERON:0001173 ! biliary tree + +[Term] +id: UBERON:0004939 +name: submucosa of common bile duct +def: "A submucosa that is part of a common bile duct [Automatically generated definition]." [OBOL:automatic] +synonym: "common bile duct submucosa" EXACT [OBOL:automatic] +synonym: "common bile ductal submucosa" EXACT [FMA:18011] +synonym: "ductus choledochus (biliaris) submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of ductus choledochus (biliaris)" EXACT [OBOL:automatic] +xref: FMA:18011 +is_a: UBERON:0004938 ! submucosa of biliary tree +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001174 ! common bile duct +relationship: part_of UBERON:0001174 ! common bile duct + +[Term] +id: UBERON:0004940 +name: submucosa of common hepatic duct +def: "A submucosa that is part of a common hepatic duct [Automatically generated definition]." [OBOL:automatic] +synonym: "common hepatic duct submucosa" EXACT [OBOL:automatic] +synonym: "common hepatic ductal submucosa" EXACT [FMA:18014] +synonym: "hepatic duct submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of hepatic duct" EXACT [OBOL:automatic] +xref: FMA:18014 +is_a: UBERON:0004938 ! submucosa of biliary tree +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001175 ! common hepatic duct +relationship: part_of UBERON:0001175 ! common hepatic duct + +[Term] +id: UBERON:0004941 +name: submucosa of right hepatic duct +def: "A submucosa that is part of a right hepatic duct [Automatically generated definition]." [OBOL:automatic] +synonym: "right hepatic duct submucosa" EXACT [OBOL:automatic] +synonym: "right hepatic ductal submucosa" EXACT [FMA:18015] +xref: FMA:18015 +is_a: UBERON:0004938 ! submucosa of biliary tree +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001176 ! right hepatic duct +relationship: part_of UBERON:0001176 ! right hepatic duct + +[Term] +id: UBERON:0004942 +name: submucosa of left hepatic duct +def: "A submucosa that is part of a left hepatic duct [Automatically generated definition]." [OBOL:automatic] +synonym: "left hepatic duct submucosa" EXACT [OBOL:automatic] +synonym: "left hepatic ductal submucosa" EXACT [FMA:18017] +xref: FMA:18017 +is_a: UBERON:0004938 ! submucosa of biliary tree +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001177 ! left hepatic duct +relationship: part_of UBERON:0001177 ! left hepatic duct + +[Term] +id: UBERON:0004943 +name: submucosa of urinary bladder +def: "The submucous layer of the wall of the urinary bladder." [BTO:0002117] +synonym: "bladder submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of bladder" EXACT [OBOL:automatic] +synonym: "submucous layer of urinary bladder" RELATED [BTO:0002117] +synonym: "tela submucosa (vesica urinaria)" EXACT LATIN [FMA:15929, FMA:TA] +synonym: "tela submucosa vesicae" EXACT LATIN [FMA:15929, FMA:TA] +synonym: "tela submucosa vesicae urinariae" EXACT [BTO:0002117] +synonym: "urinary bladder submucosa" EXACT [OBOL:automatic] +xref: BTO:0002117 +xref: EMAPA:32275 +xref: FMA:15929 +xref: http://www.snomedbrowser.com/Codes/Details/88384001 +is_a: UBERON:0000009 ! submucosa +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001255 ! urinary bladder +relationship: part_of UBERON:0001256 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! wall of urinary bladder + +[Term] +id: UBERON:0004944 +name: submucosa of trigone of urinary bladder +def: "A submucosa that is part of a trigone of urinary bladder [Automatically generated definition]." [OBOL:automatic] +synonym: "deep trigone submucosa" EXACT [OBOL:automatic] +synonym: "Lieutaud ' s trigone submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of deep trigone" EXACT [OBOL:automatic] +synonym: "submucosa of Lieutaud ' s trigone" EXACT [OBOL:automatic] +synonym: "submucosa of trigone of bladder" EXACT [OBOL:automatic] +synonym: "submucosa of urinary bladder trigone" EXACT [OBOL:automatic] +synonym: "submucosa of vesical trigone" EXACT [OBOL:automatic] +synonym: "trigone of bladder submucosa" EXACT [OBOL:automatic] +synonym: "trigone of urinary bladder submucosa" EXACT [OBOL:automatic] +synonym: "urinary bladder trigone submucosa" EXACT [OBOL:automatic] +synonym: "vesical trigone submucosa" EXACT [OBOL:automatic] +xref: EMAPA:32304 +xref: FMA:17852 +is_a: UBERON:0004943 ! submucosa of urinary bladder +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001257 ! trigone of urinary bladder +relationship: part_of UBERON:0001257 ! trigone of urinary bladder + +[Term] +id: UBERON:0004945 +name: submucosa of neck of urinary bladder +def: "A submucosa that is part of a neck of urinary bladder [Automatically generated definition]." [OBOL:automatic] +synonym: "bladder neck submucosa" EXACT [OBOL:automatic] +synonym: "neck of bladder submucosa" EXACT [OBOL:automatic] +synonym: "neck of urinary bladder submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of bladder neck" EXACT [OBOL:automatic] +synonym: "submucosa of neck of bladder" EXACT [OBOL:automatic] +synonym: "submucosa of urinary bladder neck" EXACT [OBOL:automatic] +synonym: "submucosa of vesical neck" EXACT [OBOL:automatic] +synonym: "urinary bladder neck submucosa" EXACT [OBOL:automatic] +synonym: "vesical neck submucosa" EXACT [OBOL:automatic] +xref: EMAPA:32276 +xref: FMA:17851 +is_a: UBERON:0004943 ! submucosa of urinary bladder +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001258 ! neck of urinary bladder +relationship: part_of UBERON:0001258 ! neck of urinary bladder + +[Term] +id: UBERON:0004946 +name: submucosa of ileum +def: "A submucosa that is part of a ileum [Automatically generated definition]." [OBOL:automatic] +synonym: "ileal submucosa" EXACT [FMA:14957] +synonym: "ileum submucosa" EXACT [OBOL:automatic] +xref: FMA:14957 +xref: http://www.snomedbrowser.com/Codes/Details/65374006 +is_a: UBERON:0001205 ! submucosa of small intestine +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0002116 ! ileum +relationship: part_of UBERON:0002116 ! ileum + +[Term] +id: UBERON:0004947 +name: submucosa of right main bronchus +def: "A submucosa that is part of a right main bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "right bronchus submucosa" EXACT [OBOL:automatic] +synonym: "right main bronchial submucosa" EXACT [FMA:13139] +synonym: "right main bronchus submucosa" EXACT [OBOL:automatic] +synonym: "right principal bronchus submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of right bronchus" EXACT [OBOL:automatic] +synonym: "submucosa of right principal bronchus" EXACT [OBOL:automatic] +xref: FMA:13139 +is_a: UBERON:0004949 ! submucosa of main bronchus +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0002177 ! right main bronchus +relationship: part_of UBERON:0002177 ! right main bronchus + +[Term] +id: UBERON:0004948 +name: submucosa of left main bronchus +def: "A submucosa that is part of a left main bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "left bronchus submucosa" EXACT [OBOL:automatic] +synonym: "left main bronchial submucosa" EXACT [FMA:13140] +synonym: "left main bronchus submucosa" EXACT [OBOL:automatic] +synonym: "left principal bronchus submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of left bronchus" EXACT [OBOL:automatic] +synonym: "submucosa of left principal bronchus" EXACT [OBOL:automatic] +xref: FMA:13140 +is_a: UBERON:0004949 ! submucosa of main bronchus +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0002178 ! left main bronchus +relationship: part_of UBERON:0002178 ! left main bronchus + +[Term] +id: UBERON:0004949 +name: submucosa of main bronchus +def: "A submucosa that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchus principalis submucosa" EXACT [OBOL:automatic] +synonym: "main bronchial submucosa" EXACT [FMA:13118] +synonym: "main bronchus submucosa" EXACT [OBOL:automatic] +synonym: "primary bronchus submucosa" EXACT [OBOL:automatic] +synonym: "principal bronchus submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of bronchus principalis" EXACT [OBOL:automatic] +synonym: "submucosa of primary bronchus" EXACT [OBOL:automatic] +synonym: "submucosa of principal bronchus" EXACT [OBOL:automatic] +xref: FMA:13118 +is_a: UBERON:0001957 ! submucosa of bronchus +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0002182 ! main bronchus +relationship: part_of UBERON:0002182 ! main bronchus + +[Term] +id: UBERON:0004950 +name: submucosa of lobar bronchus +def: "A submucosa that is part of a lobar bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "lobar bronchial submucosa" EXACT [FMA:62669] +synonym: "lobar bronchus submucosa" EXACT [OBOL:automatic] +synonym: "secondary bronchus submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of secondary bronchus" EXACT [OBOL:automatic] +xref: FMA:62669 +is_a: UBERON:0001957 ! submucosa of bronchus +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0002183 ! lobar bronchus +relationship: part_of UBERON:0002183 ! lobar bronchus + +[Term] +id: UBERON:0004951 +name: submucosa of segmental bronchus +def: "A submucosa that is part of a segmental bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "segmental bronchial submucosa" EXACT [FMA:62670] +synonym: "segmental bronchus submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of tertiary bronchus" EXACT [OBOL:automatic] +synonym: "tertiary bronchus submucosa" EXACT [OBOL:automatic] +xref: FMA:62670 +is_a: UBERON:0001957 ! submucosa of bronchus +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0002184 ! segmental bronchus +relationship: part_of UBERON:0002184 ! segmental bronchus + +[Term] +id: UBERON:0004952 +name: submucosa of bronchiole +def: "A submucosa that is part of a bronchiole [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchiole submucosa" EXACT [OBOL:automatic] +synonym: "lobular bronchiole submucosa" EXACT [OBOL:automatic] +synonym: "submucosa of lobular bronchiole" EXACT [OBOL:automatic] +xref: FMA:62775 +is_a: UBERON:0001957 ! submucosa of bronchus +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0002186 ! bronchiole +relationship: part_of UBERON:0002186 ! bronchiole + +[Term] +id: UBERON:0004980 +name: mucosa of ureter +def: "A mucosa that is part of a ureter [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of organ of ureter" EXACT [OBOL:automatic] +synonym: "mucosal layer of ureter" EXACT [FMA:15894] +synonym: "mucous membrane of ureter" EXACT [OBOL:automatic] +synonym: "organ mucosa of ureter" EXACT [OBOL:automatic] +synonym: "tunica mucosa (ureter)" EXACT [FMA:15894] +synonym: "tunica mucosa ureteris" EXACT LATIN [FMA:15894, FMA:TA] +synonym: "ureter mucosa" EXACT [OBOL:automatic] +synonym: "ureter mucosa of organ" EXACT [OBOL:automatic] +synonym: "ureter mucous membrane" EXACT [OBOL:automatic] +synonym: "ureter organ mucosa" EXACT [OBOL:automatic] +synonym: "ureteral mucosa" EXACT [FMA:15894] +synonym: "ureteric mucosa" EXACT [FMA:15894] +xref: FMA:15894 +xref: galen:MucousMembraneOfUreter +xref: http://www.snomedbrowser.com/Codes/Details/40476001 +is_a: UBERON:0000344 ! mucosa +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0000056 ! ureter +relationship: part_of UBERON:0009916 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! wall of ureter + +[Term] +id: UBERON:0004982 +name: mucosa of epiglottis +def: "A mucosa that is part of a epiglottis [Automatically generated definition]." [OBOL:automatic] +synonym: "epiglottis mucosa" EXACT [OBOL:automatic] +synonym: "epiglottis mucosa of organ" EXACT [OBOL:automatic] +synonym: "epiglottis mucous membrane" EXACT [OBOL:automatic] +synonym: "epiglottis organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of organ of epiglottis" EXACT [OBOL:automatic] +synonym: "mucous membrane of epiglottis" EXACT [OBOL:automatic] +synonym: "organ mucosa of epiglottis" EXACT [OBOL:automatic] +xref: FMA:64015 +xref: http://www.snomedbrowser.com/Codes/Details/156751001 +is_a: UBERON:0004987 ! mucosa of laryngopharynx +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0000388 ! epiglottis +relationship: part_of UBERON:0000388 ! epiglottis + +[Term] +id: UBERON:0004983 +name: mucosa of vagina +def: "A mucosa that is part of a vagina [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of organ of vagina" EXACT [OBOL:automatic] +synonym: "mucous membrane of vagina" EXACT [OBOL:automatic] +synonym: "organ mucosa of vagina" EXACT [OBOL:automatic] +synonym: "tunica mucosa vaginae" EXACT LATIN [FMA:19975, FMA:TA] +synonym: "vagina mucosa" EXACT [OBOL:automatic] +synonym: "vagina mucosa of organ" EXACT [OBOL:automatic] +synonym: "vagina mucous membrane" EXACT [OBOL:automatic] +synonym: "vagina organ mucosa" EXACT [OBOL:automatic] +synonym: "vaginal mucosa" EXACT [FMA:19975] +xref: BTO:0005676 +xref: FMA:19975 +xref: http://www.snomedbrowser.com/Codes/Details/362245006 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0019042 ! reproductive system mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0000996 ! vagina +relationship: part_of UBERON:0000996 ! vagina + +[Term] +id: UBERON:0004984 +name: mucosa of seminal vesicle +def: "A mucosa that is part of a seminal vesicle [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of organ of seminal gland" EXACT [OBOL:automatic] +synonym: "mucosa of organ of seminal vesicle" EXACT [OBOL:automatic] +synonym: "mucosa of seminal gland" EXACT [OBOL:automatic] +synonym: "mucous membrane of seminal gland" EXACT [OBOL:automatic] +synonym: "mucous membrane of seminal vesicle" EXACT [OBOL:automatic] +synonym: "organ mucosa of seminal gland" EXACT [OBOL:automatic] +synonym: "organ mucosa of seminal vesicle" EXACT [OBOL:automatic] +synonym: "seminal gland mucosa" EXACT [OBOL:automatic] +synonym: "seminal gland mucosa of organ" EXACT [OBOL:automatic] +synonym: "seminal gland mucous membrane" EXACT [OBOL:automatic] +synonym: "seminal gland organ mucosa" EXACT [OBOL:automatic] +synonym: "seminal vesicle mucosa" EXACT [OBOL:automatic] +synonym: "seminal vesicle mucosa of organ" EXACT [OBOL:automatic] +synonym: "seminal vesicle mucous membrane" EXACT [OBOL:automatic] +synonym: "seminal vesicle organ mucosa" EXACT [OBOL:automatic] +synonym: "tunica mucosa glandulae vesiculosae" EXACT LATIN [FMA:19405, FMA:TA] +xref: FMA:19405 +xref: http://www.snomedbrowser.com/Codes/Details/252260007 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0019042 ! reproductive system mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0000998 ! seminal vesicle +relationship: part_of UBERON:0000998 ! seminal vesicle + +[Term] +id: UBERON:0004985 +name: mucosa of ejaculatory duct +def: "A mucosa that is part of a ejaculatory duct [Automatically generated definition]." [OBOL:automatic] +synonym: "ejaculatory duct mucosa" EXACT [OBOL:automatic] +synonym: "ejaculatory duct mucosa of organ" EXACT [OBOL:automatic] +synonym: "ejaculatory duct mucous membrane" EXACT [OBOL:automatic] +synonym: "ejaculatory duct organ mucosa" EXACT [OBOL:automatic] +synonym: "ejaculatory ductal mucosa" EXACT [FMA:19373] +synonym: "mucosa of organ of ejaculatory duct" EXACT [OBOL:automatic] +synonym: "mucous membrane of ejaculatory duct" EXACT [OBOL:automatic] +synonym: "organ mucosa of ejaculatory duct" EXACT [OBOL:automatic] +xref: FMA:19373 +is_a: UBERON:0019042 ! reproductive system mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0000999 ! ejaculatory duct +relationship: part_of UBERON:0000999 ! ejaculatory duct + +[Term] +id: UBERON:0004986 +name: mucosa of deferent duct +def: "A mucosa that is part of a vas deferens [Automatically generated definition]." [OBOL:automatic] +synonym: "deferent duct mucosa" EXACT [OBOL:automatic] +synonym: "deferent duct mucosa of organ" EXACT [OBOL:automatic] +synonym: "deferent duct mucous membrane" EXACT [OBOL:automatic] +synonym: "deferent duct organ mucosa" EXACT [OBOL:automatic] +synonym: "deferent ductal mucosa" EXACT [FMA:19240] +synonym: "ductus deferens mucosa" EXACT [OBOL:automatic] +synonym: "ductus deferens mucosa of organ" EXACT [OBOL:automatic] +synonym: "ductus deferens mucous membrane" EXACT [OBOL:automatic] +synonym: "ductus deferens organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of ductus deferens" EXACT [OBOL:automatic] +synonym: "mucosa of organ of deferent duct" EXACT [OBOL:automatic] +synonym: "mucosa of organ of ductus deferens" EXACT [OBOL:automatic] +synonym: "mucosa of organ of sperm duct" EXACT [OBOL:automatic] +synonym: "mucosa of organ of vas deferen" EXACT [OBOL:automatic] +synonym: "mucosa of organ of vas deferens" EXACT [OBOL:automatic] +synonym: "mucosa of sperm duct" EXACT [OBOL:automatic] +synonym: "mucosa of vas deferen" EXACT [OBOL:automatic] +synonym: "mucosa of vas deferens" EXACT [OBOL:automatic] +synonym: "mucous membrane of deferent duct" EXACT [OBOL:automatic] +synonym: "mucous membrane of ductus deferens" EXACT [OBOL:automatic] +synonym: "mucous membrane of sperm duct" EXACT [OBOL:automatic] +synonym: "mucous membrane of vas deferen" EXACT [OBOL:automatic] +synonym: "mucous membrane of vas deferens" EXACT [OBOL:automatic] +synonym: "organ mucosa of deferent duct" EXACT [OBOL:automatic] +synonym: "organ mucosa of ductus deferens" EXACT [OBOL:automatic] +synonym: "organ mucosa of sperm duct" EXACT [OBOL:automatic] +synonym: "organ mucosa of vas deferen" EXACT [OBOL:automatic] +synonym: "organ mucosa of vas deferens" EXACT [OBOL:automatic] +synonym: "sperm duct mucosa" EXACT [OBOL:automatic] +synonym: "sperm duct mucosa of organ" EXACT [OBOL:automatic] +synonym: "sperm duct mucous membrane" EXACT [OBOL:automatic] +synonym: "sperm duct organ mucosa" EXACT [OBOL:automatic] +synonym: "tunica mucosa (ductus deferens)" EXACT [FMA:19240] +synonym: "tunica mucosa ductus deferentis" EXACT LATIN [FMA:19240, FMA:TA] +synonym: "vas deferen mucosa" EXACT [OBOL:automatic] +synonym: "vas deferen mucosa of organ" EXACT [OBOL:automatic] +synonym: "vas deferen mucous membrane" EXACT [OBOL:automatic] +synonym: "vas deferen organ mucosa" EXACT [OBOL:automatic] +synonym: "vas deferens mucosa" EXACT [OBOL:automatic] +synonym: "vas deferens mucosa of organ" EXACT [OBOL:automatic] +synonym: "vas deferens mucous membrane" EXACT [OBOL:automatic] +synonym: "vas deferens organ mucosa" EXACT [OBOL:automatic] +xref: FMA:19240 +xref: http://www.snomedbrowser.com/Codes/Details/299626000 +is_a: UBERON:0019042 ! reproductive system mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001000 ! vas deferens +relationship: part_of UBERON:0001000 ! vas deferens + +[Term] +id: UBERON:0004987 +name: mucosa of laryngopharynx +def: "A mucosa that is part of a hypopharynx [Automatically generated definition]." [OBOL:automatic] +synonym: "hypopharynx mucosa" EXACT [OBOL:automatic] +synonym: "hypopharynx mucosa of organ" EXACT [OBOL:automatic] +synonym: "hypopharynx mucous membrane" EXACT [OBOL:automatic] +synonym: "hypopharynx organ mucosa" EXACT [OBOL:automatic] +synonym: "laryngeal pharynx mucosa" EXACT [OBOL:automatic] +synonym: "laryngeal pharynx mucosa of organ" EXACT [OBOL:automatic] +synonym: "laryngeal pharynx mucous membrane" EXACT [OBOL:automatic] +synonym: "laryngeal pharynx organ mucosa" EXACT [OBOL:automatic] +synonym: "laryngopharynx mucosa" EXACT [OBOL:automatic] +synonym: "laryngopharynx mucosa of organ" EXACT [OBOL:automatic] +synonym: "laryngopharynx mucous membrane" EXACT [OBOL:automatic] +synonym: "laryngopharynx organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of hypopharynx" EXACT [OBOL:automatic] +synonym: "mucosa of laryngeal pharynx" EXACT [OBOL:automatic] +synonym: "mucosa of organ of hypopharynx" EXACT [OBOL:automatic] +synonym: "mucosa of organ of laryngeal pharynx" EXACT [OBOL:automatic] +synonym: "mucosa of organ of laryngopharynx" EXACT [OBOL:automatic] +synonym: "mucous membrane of hypopharynx" EXACT [OBOL:automatic] +synonym: "mucous membrane of laryngeal pharynx" EXACT [OBOL:automatic] +synonym: "mucous membrane of laryngopharynx" EXACT [OBOL:automatic] +synonym: "organ mucosa of hypopharynx" EXACT [OBOL:automatic] +synonym: "organ mucosa of laryngeal pharynx" EXACT [OBOL:automatic] +synonym: "organ mucosa of laryngopharynx" EXACT [OBOL:automatic] +xref: FMA:55030 +xref: http://www.snomedbrowser.com/Codes/Details/362126008 +is_a: UBERON:0000355 ! pharyngeal mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001051 ! hypopharynx +relationship: part_of UBERON:0001051 ! hypopharynx + +[Term] +id: UBERON:0004988 +name: mucosa of cystic duct +def: "A mucosa that is part of a cystic duct [Automatically generated definition]." [OBOL:automatic] +synonym: "cystic duct mucosa" EXACT [OBOL:automatic] +synonym: "cystic duct mucosa of organ" EXACT [OBOL:automatic] +synonym: "cystic duct mucous membrane" EXACT [OBOL:automatic] +synonym: "cystic duct organ mucosa" EXACT [OBOL:automatic] +synonym: "cystic ductal mucosa" EXACT [FMA:14690] +synonym: "mucosa of organ of cystic duct" EXACT [OBOL:automatic] +synonym: "mucous membrane of cystic duct" EXACT [OBOL:automatic] +synonym: "organ mucosa of cystic duct" EXACT [OBOL:automatic] +xref: FMA:14690 +is_a: UBERON:0004999 ! mucosa of biliary tree +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001152 ! cystic duct +relationship: part_of UBERON:0001152 ! cystic duct + +[Term] +id: UBERON:0004989 +name: mucosa of appendix +def: "A mucosa that is part of an appendix [Automatically generated definition]." [OBOL:automatic] +synonym: "appendiceal mucous membrane" EXACT [FMA:14991] +synonym: "appendix mucosa" EXACT [OBOL:automatic] +synonym: "appendix mucosa of organ" EXACT [OBOL:automatic] +synonym: "appendix mucous membrane" EXACT [OBOL:automatic] +synonym: "appendix organ mucosa" EXACT [OBOL:automatic] +synonym: "caecal appendix mucosa" EXACT [OBOL:automatic] +synonym: "caecal appendix mucosa of organ" EXACT [OBOL:automatic] +synonym: "caecal appendix mucous membrane" EXACT [OBOL:automatic] +synonym: "caecal appendix organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of caecal appendix" EXACT [OBOL:automatic] +synonym: "mucosa of organ of appendix" EXACT [OBOL:automatic] +synonym: "mucosa of organ of caecal appendix" EXACT [OBOL:automatic] +synonym: "mucosa of organ of vermiform appendix" EXACT [OBOL:automatic] +synonym: "mucosa of organ of vermix" EXACT [OBOL:automatic] +synonym: "mucosa of vermiform appendix" EXACT [OBOL:automatic] +synonym: "mucosa of vermix" EXACT [OBOL:automatic] +synonym: "mucous membrane of appendix" EXACT [OBOL:automatic] +synonym: "mucous membrane of caecal appendix" EXACT [OBOL:automatic] +synonym: "mucous membrane of vermiform appendix" EXACT [OBOL:automatic] +synonym: "mucous membrane of vermix" EXACT [OBOL:automatic] +synonym: "organ mucosa of appendix" EXACT [OBOL:automatic] +synonym: "organ mucosa of caecal appendix" EXACT [OBOL:automatic] +synonym: "organ mucosa of vermiform appendix" EXACT [OBOL:automatic] +synonym: "organ mucosa of vermix" EXACT [OBOL:automatic] +synonym: "vermiform appendix mucosa" EXACT [OBOL:automatic] +synonym: "vermiform appendix mucosa of organ" EXACT [OBOL:automatic] +synonym: "vermiform appendix mucous membrane" EXACT [OBOL:automatic] +synonym: "vermiform appendix organ mucosa" EXACT [OBOL:automatic] +synonym: "vermix mucosa" EXACT [OBOL:automatic] +synonym: "vermix mucosa of organ" EXACT [OBOL:automatic] +synonym: "vermix mucous membrane" EXACT [OBOL:automatic] +synonym: "vermix organ mucosa" EXACT [OBOL:automatic] +xref: CALOHA:TS-2022 +xref: FMA:14991 +xref: http://www.snomedbrowser.com/Codes/Details/362155000 +is_a: UBERON:0000314 ! cecum mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001154 ! vermiform appendix +relationship: part_of UBERON:0001154 ! vermiform appendix + +[Term] +id: UBERON:0004990 +name: mucosa of ascending colon +def: "A mucosa that is part of an ascending colon [Automatically generated definition]." [OBOL:automatic] +synonym: "ascending colon mucosa" EXACT [OBOL:automatic] +synonym: "ascending colon mucosa of organ" EXACT [OBOL:automatic] +synonym: "ascending colon mucous membrane" EXACT [OBOL:automatic] +synonym: "ascending colon organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of organ of ascending colon" EXACT [OBOL:automatic] +synonym: "mucous membrane of ascending colon" EXACT [OBOL:automatic] +synonym: "organ mucosa of ascending colon" EXACT [OBOL:automatic] +xref: FMA:15005 +is_a: UBERON:0000317 ! colonic mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001156 ! ascending colon +relationship: part_of UBERON:0001156 ! ascending colon + +[Term] +id: UBERON:0004991 +name: mucosa of transverse colon +def: "A mucosa that is part of a transverse colon [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of organ of transverse colon" EXACT [OBOL:automatic] +synonym: "mucous membrane of transverse colon" EXACT [OBOL:automatic] +synonym: "organ mucosa of transverse colon" EXACT [OBOL:automatic] +synonym: "transverse colon mucosa" EXACT [OBOL:automatic] +synonym: "transverse colon mucosa of organ" EXACT [OBOL:automatic] +synonym: "transverse colon mucous membrane" EXACT [OBOL:automatic] +synonym: "transverse colon organ mucosa" EXACT [OBOL:automatic] +xref: FMA:15012 +is_a: UBERON:0000317 ! colonic mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001157 ! transverse colon +relationship: part_of UBERON:0001157 ! transverse colon + +[Term] +id: UBERON:0004992 +name: mucosa of descending colon +def: "A mucosa that is part of a descending colon [Automatically generated definition]." [OBOL:automatic] +synonym: "descending colon mucosa" EXACT [OBOL:automatic] +synonym: "descending colon mucosa of organ" EXACT [OBOL:automatic] +synonym: "descending colon mucous membrane" EXACT [OBOL:automatic] +synonym: "descending colon organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of organ of descending colon" EXACT [OBOL:automatic] +synonym: "mucous membrane of descending colon" EXACT [OBOL:automatic] +synonym: "organ mucosa of descending colon" EXACT [OBOL:automatic] +xref: FMA:15019 +is_a: UBERON:0000317 ! colonic mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001158 ! descending colon +relationship: part_of UBERON:0001158 ! descending colon + +[Term] +id: UBERON:0004993 +name: mucosa of sigmoid colon +def: "A mucosa that is part of a sigmoid colon [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of organ of sigmoid colon" EXACT [OBOL:automatic] +synonym: "mucous membrane of sigmoid colon" EXACT [OBOL:automatic] +synonym: "organ mucosa of sigmoid colon" EXACT [OBOL:automatic] +synonym: "sigmoid colon mucosa" EXACT [OBOL:automatic] +synonym: "sigmoid colon mucosa of organ" EXACT [OBOL:automatic] +synonym: "sigmoid colon mucous membrane" EXACT [OBOL:automatic] +synonym: "sigmoid colon organ mucosa" EXACT [OBOL:automatic] +xref: FMA:15026 +is_a: UBERON:0000317 ! colonic mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001159 ! sigmoid colon +relationship: part_of UBERON:0001159 ! sigmoid colon + +[Term] +id: UBERON:0004994 +name: mucosa of fundus of stomach +def: "A mucosa that is part of a fundus of stomach [Automatically generated definition]." [OBOL:automatic] +synonym: "fundus gastricus (ventricularis) mucosa" EXACT [OBOL:automatic] +synonym: "fundus gastricus (ventricularis) mucosa of organ" EXACT [OBOL:automatic] +synonym: "fundus gastricus (ventricularis) mucous membrane" EXACT [OBOL:automatic] +synonym: "fundus gastricus (ventricularis) organ mucosa" EXACT [OBOL:automatic] +synonym: "fundus of stomach mucosa" EXACT [OBOL:automatic] +synonym: "fundus of stomach mucosa of organ" EXACT [OBOL:automatic] +synonym: "fundus of stomach mucous membrane" EXACT [OBOL:automatic] +synonym: "fundus of stomach organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of fundus gastricus (ventricularis)" EXACT [OBOL:automatic] +synonym: "mucosa of organ of fundus gastricus (ventricularis)" EXACT [OBOL:automatic] +synonym: "mucosa of organ of fundus of stomach" EXACT [OBOL:automatic] +synonym: "mucosa of organ of stomach fundus" EXACT [OBOL:automatic] +synonym: "mucosa of stomach fundus" EXACT [OBOL:automatic] +synonym: "mucous membrane of fundus gastricus (ventricularis)" EXACT [OBOL:automatic] +synonym: "mucous membrane of fundus of stomach" EXACT [OBOL:automatic] +synonym: "mucous membrane of stomach fundus" EXACT [OBOL:automatic] +synonym: "organ mucosa of fundus gastricus (ventricularis)" EXACT [OBOL:automatic] +synonym: "organ mucosa of fundus of stomach" EXACT [OBOL:automatic] +synonym: "organ mucosa of stomach fundus" EXACT [OBOL:automatic] +synonym: "stomach fundus mucosa" EXACT [OBOL:automatic] +synonym: "stomach fundus mucosa of organ" EXACT [OBOL:automatic] +synonym: "stomach fundus mucous membrane" EXACT [OBOL:automatic] +synonym: "stomach fundus organ mucosa" EXACT [OBOL:automatic] +xref: EMAPA:27151 +xref: FMA:17053 +is_a: UBERON:0001199 ! mucosa of stomach +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001160 ! fundus of stomach +relationship: part_of UBERON:0001160 ! fundus of stomach + +[Term] +id: UBERON:0004995 +name: mucosa of body of stomach +def: "A mucosa that is part of a body of stomach [Automatically generated definition]." [OBOL:automatic] +synonym: "body of stomach mucosa" EXACT [OBOL:automatic] +synonym: "body of stomach mucosa of organ" EXACT [OBOL:automatic] +synonym: "body of stomach mucous membrane" EXACT [OBOL:automatic] +synonym: "body of stomach organ mucosa" EXACT [OBOL:automatic] +synonym: "corpus gastricum (ventriculare) mucosa" EXACT [OBOL:automatic] +synonym: "corpus gastricum (ventriculare) mucosa of organ" EXACT [OBOL:automatic] +synonym: "corpus gastricum (ventriculare) mucous membrane" EXACT [OBOL:automatic] +synonym: "corpus gastricum (ventriculare) organ mucosa" EXACT [OBOL:automatic] +synonym: "gastric body mucosa" EXACT [OBOL:automatic] +synonym: "gastric body mucosa of organ" EXACT [OBOL:automatic] +synonym: "gastric body mucous membrane" EXACT [OBOL:automatic] +synonym: "gastric body organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of corpus gastricum (ventriculare)" EXACT [OBOL:automatic] +synonym: "mucosa of gastric body" EXACT [OBOL:automatic] +synonym: "mucosa of organ of body of stomach" EXACT [OBOL:automatic] +synonym: "mucosa of organ of corpus gastricum (ventriculare)" EXACT [OBOL:automatic] +synonym: "mucosa of organ of gastric body" EXACT [OBOL:automatic] +synonym: "mucosa of organ of stomach body" EXACT [OBOL:automatic] +synonym: "mucosa of stomach body" EXACT [OBOL:automatic] +synonym: "mucous membrane of body of stomach" EXACT [OBOL:automatic] +synonym: "mucous membrane of corpus gastricum (ventriculare)" EXACT [OBOL:automatic] +synonym: "mucous membrane of gastric body" EXACT [OBOL:automatic] +synonym: "mucous membrane of stomach body" EXACT [OBOL:automatic] +synonym: "organ mucosa of body of stomach" EXACT [OBOL:automatic] +synonym: "organ mucosa of corpus gastricum (ventriculare)" EXACT [OBOL:automatic] +synonym: "organ mucosa of gastric body" EXACT [OBOL:automatic] +synonym: "organ mucosa of stomach body" EXACT [OBOL:automatic] +synonym: "stomach body mucosa" EXACT [OBOL:automatic] +synonym: "stomach body mucosa of organ" EXACT [OBOL:automatic] +synonym: "stomach body mucous membrane" EXACT [OBOL:automatic] +synonym: "stomach body organ mucosa" EXACT [OBOL:automatic] +xref: FMA:17054 +is_a: UBERON:0001199 ! mucosa of stomach +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001161 ! body of stomach +relationship: part_of UBERON:0001161 ! body of stomach + +[Term] +id: UBERON:0004996 +name: mucosa of cardia of stomach +def: "A mucosa that is part of a cardia of stomach [Automatically generated definition]." [OBOL:automatic] +synonym: "cardia of stomach mucosa" EXACT [OBOL:automatic] +synonym: "cardia of stomach mucosa of organ" EXACT [OBOL:automatic] +synonym: "cardia of stomach mucous membrane" EXACT [OBOL:automatic] +synonym: "cardia of stomach organ mucosa" EXACT [OBOL:automatic] +synonym: "cardial part of stomach mucosa" EXACT [OBOL:automatic] +synonym: "cardial part of stomach mucosa of organ" EXACT [OBOL:automatic] +synonym: "cardial part of stomach mucous membrane" EXACT [OBOL:automatic] +synonym: "cardial part of stomach organ mucosa" EXACT [OBOL:automatic] +synonym: "gastric cardia mucosa" EXACT [OBOL:automatic] +synonym: "gastric cardia mucosa of organ" EXACT [OBOL:automatic] +synonym: "gastric cardia mucous membrane" EXACT [OBOL:automatic] +synonym: "gastric cardia organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of cardial part of stomach" EXACT [OBOL:automatic] +synonym: "mucosa of gastric cardia" EXACT [OBOL:automatic] +synonym: "mucosa of organ of cardia of stomach" EXACT [OBOL:automatic] +synonym: "mucosa of organ of cardial part of stomach" EXACT [OBOL:automatic] +synonym: "mucosa of organ of gastric cardia" EXACT [OBOL:automatic] +synonym: "mucosa of organ of pars cardiaca (gaster)" EXACT [OBOL:automatic] +synonym: "mucosa of organ of stomach cardiac region" EXACT [OBOL:automatic] +synonym: "mucosa of pars cardiaca (gaster)" EXACT [OBOL:automatic] +synonym: "mucosa of stomach cardiac region" EXACT [OBOL:automatic] +synonym: "mucous membrane of cardia of stomach" EXACT [OBOL:automatic] +synonym: "mucous membrane of cardial part of stomach" EXACT [OBOL:automatic] +synonym: "mucous membrane of gastric cardia" EXACT [OBOL:automatic] +synonym: "mucous membrane of pars cardiaca (gaster)" EXACT [OBOL:automatic] +synonym: "mucous membrane of stomach cardiac region" EXACT [OBOL:automatic] +synonym: "organ mucosa of cardia of stomach" EXACT [OBOL:automatic] +synonym: "organ mucosa of cardial part of stomach" EXACT [OBOL:automatic] +synonym: "organ mucosa of gastric cardia" EXACT [OBOL:automatic] +synonym: "organ mucosa of pars cardiaca (gaster)" EXACT [OBOL:automatic] +synonym: "organ mucosa of stomach cardiac region" EXACT [OBOL:automatic] +synonym: "pars cardiaca (gaster) mucosa" EXACT [OBOL:automatic] +synonym: "pars cardiaca (gaster) mucosa of organ" EXACT [OBOL:automatic] +synonym: "pars cardiaca (gaster) mucous membrane" EXACT [OBOL:automatic] +synonym: "pars cardiaca (gaster) organ mucosa" EXACT [OBOL:automatic] +synonym: "stomach cardiac region mucosa" EXACT [OBOL:automatic] +synonym: "stomach cardiac region mucosa of organ" EXACT [OBOL:automatic] +synonym: "stomach cardiac region mucous membrane" EXACT [OBOL:automatic] +synonym: "stomach cardiac region organ mucosa" EXACT [OBOL:automatic] +xref: FMA:17456 +is_a: UBERON:0001199 ! mucosa of stomach +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001162 ! cardia of stomach +relationship: part_of UBERON:0001162 ! cardia of stomach + +[Term] +id: UBERON:0004997 +name: mucosa of pyloric antrum +def: "A mucosa that is part of a pyloric antrum [Automatically generated definition]." [OBOL:automatic] +synonym: "antral mucosa" EXACT [BTO:0004107] +synonym: "antrum of stomach mucosa" EXACT [OBOL:automatic] +synonym: "antrum of stomach mucosa of organ" EXACT [OBOL:automatic] +synonym: "antrum of stomach mucous membrane" EXACT [OBOL:automatic] +synonym: "antrum of stomach organ mucosa" EXACT [OBOL:automatic] +synonym: "gastric antrum mucosa" RELATED [BTO:0004107] +synonym: "mucosa of antrum of stomach" EXACT [OBOL:automatic] +synonym: "mucosa of organ of antrum of stomach" EXACT [OBOL:automatic] +synonym: "mucosa of organ of pyloric antrum" EXACT [OBOL:automatic] +synonym: "mucosa of organ of stomach pyloric antrum" EXACT [OBOL:automatic] +synonym: "mucosa of stomach pyloric antrum" EXACT [OBOL:automatic] +synonym: "mucous membrane of antrum of stomach" EXACT [OBOL:automatic] +synonym: "mucous membrane of pyloric antrum" EXACT [OBOL:automatic] +synonym: "mucous membrane of stomach pyloric antrum" EXACT [OBOL:automatic] +synonym: "organ mucosa of antrum of stomach" EXACT [OBOL:automatic] +synonym: "organ mucosa of pyloric antrum" EXACT [OBOL:automatic] +synonym: "organ mucosa of stomach pyloric antrum" EXACT [OBOL:automatic] +synonym: "pyloric antrum mucosa" EXACT [OBOL:automatic] +synonym: "pyloric antrum mucosa of organ" EXACT [OBOL:automatic] +synonym: "pyloric antrum mucous membrane" EXACT [OBOL:automatic] +synonym: "pyloric antrum organ mucosa" EXACT [OBOL:automatic] +synonym: "stomach pyloric antrum mucosa" EXACT [OBOL:automatic] +synonym: "stomach pyloric antrum mucosa of organ" EXACT [OBOL:automatic] +synonym: "stomach pyloric antrum mucous membrane" EXACT [OBOL:automatic] +synonym: "stomach pyloric antrum organ mucosa" EXACT [OBOL:automatic] +xref: BTO:0004107 +xref: FMA:17055 +is_a: UBERON:0004998 ! mucosa of pylorus +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001165 ! pyloric antrum +relationship: part_of UBERON:0001165 ! pyloric antrum + +[Term] +id: UBERON:0004998 +name: mucosa of pylorus +def: "A mucosa that is part of a pylorus [Automatically generated definition]." [OBOL:automatic] +synonym: "antropyloric mucosa" RELATED [BTO:0002984] +synonym: "mucosa of organ of pyloric part of stomach" EXACT [OBOL:automatic] +synonym: "mucosa of organ of pylorus" EXACT [OBOL:automatic] +synonym: "mucosa of organ of stomach pyloric region" EXACT [OBOL:automatic] +synonym: "mucosa of pyloric part of stomach" EXACT [OBOL:automatic] +synonym: "mucosa of stomach pyloric region" EXACT [OBOL:automatic] +synonym: "mucous membrane of pyloric part of stomach" EXACT [OBOL:automatic] +synonym: "mucous membrane of pylorus" EXACT [OBOL:automatic] +synonym: "mucous membrane of stomach pyloric region" EXACT [OBOL:automatic] +synonym: "organ mucosa of pyloric part of stomach" EXACT [OBOL:automatic] +synonym: "organ mucosa of pylorus" EXACT [OBOL:automatic] +synonym: "organ mucosa of stomach pyloric region" EXACT [OBOL:automatic] +synonym: "pyloric part of stomach mucosa" EXACT [OBOL:automatic] +synonym: "pyloric part of stomach mucosa of organ" EXACT [OBOL:automatic] +synonym: "pyloric part of stomach mucous membrane" EXACT [OBOL:automatic] +synonym: "pyloric part of stomach organ mucosa" EXACT [OBOL:automatic] +synonym: "pylorus mucosa" EXACT [OBOL:automatic] +synonym: "pylorus mucosa of organ" EXACT [OBOL:automatic] +synonym: "pylorus mucous membrane" EXACT [OBOL:automatic] +synonym: "pylorus organ mucosa" EXACT [OBOL:automatic] +synonym: "stomach pyloric region mucosa" EXACT [OBOL:automatic] +synonym: "stomach pyloric region mucosa of organ" EXACT [OBOL:automatic] +synonym: "stomach pyloric region mucous membrane" EXACT [OBOL:automatic] +synonym: "stomach pyloric region organ mucosa" EXACT [OBOL:automatic] +xref: BTO:0004110 +xref: EMAPA:27199 +xref: FMA:17461 +is_a: UBERON:0001199 ! mucosa of stomach +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001166 ! pylorus +relationship: part_of UBERON:0001166 ! pylorus + +[Term] +id: UBERON:0004999 +name: mucosa of biliary tree +def: "A mucosa that is part of a biliary tree [Automatically generated definition]." [OBOL:automatic] +synonym: "biliary tract mucosa" EXACT [OBOL:automatic] +synonym: "biliary tract mucosa of organ" EXACT [OBOL:automatic] +synonym: "biliary tract mucous membrane" EXACT [OBOL:automatic] +synonym: "biliary tract organ mucosa" EXACT [OBOL:automatic] +synonym: "biliary tree mucosa" EXACT [OBOL:automatic] +synonym: "biliary tree mucosa of organ" EXACT [OBOL:automatic] +synonym: "biliary tree mucous membrane" EXACT [OBOL:automatic] +synonym: "biliary tree organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of biliary tract" EXACT [OBOL:automatic] +synonym: "mucosa of organ of biliary tract" EXACT [OBOL:automatic] +synonym: "mucosa of organ of biliary tree" EXACT [OBOL:automatic] +synonym: "mucous membrane of biliary tract" EXACT [OBOL:automatic] +synonym: "mucous membrane of biliary tree" EXACT [OBOL:automatic] +synonym: "organ mucosa of biliary tract" EXACT [OBOL:automatic] +synonym: "organ mucosa of biliary tree" EXACT [OBOL:automatic] +xref: FMA:14695 +is_a: UBERON:0000344 ! mucosa +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001173 ! biliary tree +relationship: part_of UBERON:0001173 ! biliary tree + +[Term] +id: UBERON:0005000 +name: mucosa of common bile duct +def: "A mucosa that is part of a common bile duct [Automatically generated definition]." [OBOL:automatic] +synonym: "common bile duct mucosa" EXACT [OBOL:automatic] +synonym: "common bile duct mucosa of organ" EXACT [OBOL:automatic] +synonym: "common bile duct mucous membrane" EXACT [OBOL:automatic] +synonym: "common bile duct organ mucosa" EXACT [OBOL:automatic] +synonym: "common bile ductal mucosa" EXACT [FMA:14688] +synonym: "ductus choledochus (biliaris) mucosa" EXACT [OBOL:automatic] +synonym: "ductus choledochus (biliaris) mucosa of organ" EXACT [OBOL:automatic] +synonym: "ductus choledochus (biliaris) mucous membrane" EXACT [OBOL:automatic] +synonym: "ductus choledochus (biliaris) organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of ductus choledochus (biliaris)" EXACT [OBOL:automatic] +synonym: "mucosa of organ of common bile duct" EXACT [OBOL:automatic] +synonym: "mucosa of organ of ductus choledochus (biliaris)" EXACT [OBOL:automatic] +synonym: "mucous membrane of common bile duct" EXACT [OBOL:automatic] +synonym: "mucous membrane of ductus choledochus (biliaris)" EXACT [OBOL:automatic] +synonym: "organ mucosa of common bile duct" EXACT [OBOL:automatic] +synonym: "organ mucosa of ductus choledochus (biliaris)" EXACT [OBOL:automatic] +xref: FMA:14688 +is_a: UBERON:0004999 ! mucosa of biliary tree +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001174 ! common bile duct +relationship: part_of UBERON:0001174 ! common bile duct + +[Term] +id: UBERON:0005001 +name: mucosa of common hepatic duct +def: "A mucosa that is part of a common hepatic duct [Automatically generated definition]." [OBOL:automatic] +synonym: "common hepatic duct mucosa" EXACT [OBOL:automatic] +synonym: "common hepatic duct mucosa of organ" EXACT [OBOL:automatic] +synonym: "common hepatic duct mucous membrane" EXACT [OBOL:automatic] +synonym: "common hepatic duct organ mucosa" EXACT [OBOL:automatic] +synonym: "common hepatic ductal mucosa" EXACT [FMA:14691] +synonym: "hepatic duct mucosa" EXACT [OBOL:automatic] +synonym: "hepatic duct mucosa of organ" EXACT [OBOL:automatic] +synonym: "hepatic duct mucous membrane" EXACT [OBOL:automatic] +synonym: "hepatic duct organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of hepatic duct" EXACT [OBOL:automatic] +synonym: "mucosa of organ of common hepatic duct" EXACT [OBOL:automatic] +synonym: "mucosa of organ of hepatic duct" EXACT [OBOL:automatic] +synonym: "mucous membrane of common hepatic duct" EXACT [OBOL:automatic] +synonym: "mucous membrane of hepatic duct" EXACT [OBOL:automatic] +synonym: "organ mucosa of common hepatic duct" EXACT [OBOL:automatic] +synonym: "organ mucosa of hepatic duct" EXACT [OBOL:automatic] +xref: FMA:14691 +is_a: UBERON:0004999 ! mucosa of biliary tree +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001175 ! common hepatic duct +relationship: part_of UBERON:0001175 ! common hepatic duct + +[Term] +id: UBERON:0005002 +name: mucosa of right hepatic duct +def: "A mucosa that is part of a right hepatic duct [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of organ of right hepatic duct" EXACT [OBOL:automatic] +synonym: "mucous membrane of right hepatic duct" EXACT [OBOL:automatic] +synonym: "organ mucosa of right hepatic duct" EXACT [OBOL:automatic] +synonym: "right hepatic duct mucosa" EXACT [OBOL:automatic] +synonym: "right hepatic duct mucosa of organ" EXACT [OBOL:automatic] +synonym: "right hepatic duct mucous membrane" EXACT [OBOL:automatic] +synonym: "right hepatic duct organ mucosa" EXACT [OBOL:automatic] +synonym: "right hepatic ductal mucosa" EXACT [FMA:14692] +xref: FMA:14692 +is_a: UBERON:0004999 ! mucosa of biliary tree +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001176 ! right hepatic duct +relationship: part_of UBERON:0001176 ! right hepatic duct + +[Term] +id: UBERON:0005003 +name: mucosa of left hepatic duct +def: "A mucosa that is part of a left hepatic duct [Automatically generated definition]." [OBOL:automatic] +synonym: "left hepatic duct mucosa" EXACT [OBOL:automatic] +synonym: "left hepatic duct mucosa of organ" EXACT [OBOL:automatic] +synonym: "left hepatic duct mucous membrane" EXACT [OBOL:automatic] +synonym: "left hepatic duct organ mucosa" EXACT [OBOL:automatic] +synonym: "left hepatic ductal mucosa" EXACT [FMA:14693] +synonym: "mucosa of organ of left hepatic duct" EXACT [OBOL:automatic] +synonym: "mucous membrane of left hepatic duct" EXACT [OBOL:automatic] +synonym: "organ mucosa of left hepatic duct" EXACT [OBOL:automatic] +xref: FMA:14693 +is_a: UBERON:0004999 ! mucosa of biliary tree +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001177 ! left hepatic duct +relationship: part_of UBERON:0001177 ! left hepatic duct + +[Term] +id: UBERON:0005004 +name: mucosa of right ureter +def: "A mucosa that is part of a right ureter [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of organ of right ureter" EXACT [OBOL:automatic] +synonym: "mucous membrane of right ureter" EXACT [OBOL:automatic] +synonym: "organ mucosa of right ureter" EXACT [OBOL:automatic] +synonym: "right ureter mucosa" EXACT [OBOL:automatic] +synonym: "right ureter mucosa of organ" EXACT [OBOL:automatic] +synonym: "right ureter mucous membrane" EXACT [OBOL:automatic] +synonym: "right ureter organ mucosa" EXACT [OBOL:automatic] +synonym: "right ureteral mucosa" EXACT [FMA:17806] +xref: FMA:17806 +is_a: UBERON:0004980 ! mucosa of ureter +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001222 ! right ureter +relationship: part_of UBERON:0001222 ! right ureter + +[Term] +id: UBERON:0005005 +name: mucosa of left ureter +def: "A mucosa that is part of a left ureter [Automatically generated definition]." [OBOL:automatic] +synonym: "left ureter mucosa" EXACT [OBOL:automatic] +synonym: "left ureter mucosa of organ" EXACT [OBOL:automatic] +synonym: "left ureter mucous membrane" EXACT [OBOL:automatic] +synonym: "left ureter organ mucosa" EXACT [OBOL:automatic] +synonym: "left ureteral mucosa" EXACT [FMA:17807] +synonym: "mucosa of organ of left ureter" EXACT [OBOL:automatic] +synonym: "mucous membrane of left ureter" EXACT [OBOL:automatic] +synonym: "organ mucosa of left ureter" EXACT [OBOL:automatic] +xref: FMA:17807 +is_a: UBERON:0004980 ! mucosa of ureter +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001223 ! left ureter +relationship: part_of UBERON:0001223 ! left ureter + +[Term] +id: UBERON:0005006 +name: mucosa of renal pelvis +def: "A mucosa that is part of a renal pelvis [Automatically generated definition]." [OBOL:automatic] +synonym: "kidney pelvis mucosa" EXACT [OBOL:automatic] +synonym: "kidney pelvis mucosa of organ" EXACT [OBOL:automatic] +synonym: "kidney pelvis mucous membrane" EXACT [OBOL:automatic] +synonym: "kidney pelvis organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of kidney pelvis" EXACT [OBOL:automatic] +synonym: "mucosa of organ of kidney pelvis" EXACT [OBOL:automatic] +synonym: "mucosa of organ of pelvis of ureter" EXACT [OBOL:automatic] +synonym: "mucosa of organ of renal pelvis" EXACT [OBOL:automatic] +synonym: "mucosa of pelvis of ureter" EXACT [OBOL:automatic] +synonym: "mucous membrane of kidney pelvis" EXACT [OBOL:automatic] +synonym: "mucous membrane of pelvis of ureter" EXACT [OBOL:automatic] +synonym: "mucous membrane of renal pelvis" EXACT [OBOL:automatic] +synonym: "organ mucosa of kidney pelvis" EXACT [OBOL:automatic] +synonym: "organ mucosa of pelvis of ureter" EXACT [OBOL:automatic] +synonym: "organ mucosa of renal pelvis" EXACT [OBOL:automatic] +synonym: "pelvis of ureter mucosa" EXACT [OBOL:automatic] +synonym: "pelvis of ureter mucosa of organ" EXACT [OBOL:automatic] +synonym: "pelvis of ureter mucous membrane" EXACT [OBOL:automatic] +synonym: "pelvis of ureter organ mucosa" EXACT [OBOL:automatic] +synonym: "renal pelvic mucosa" EXACT [FMA:17931] +synonym: "renal pelvis mucosa" EXACT [OBOL:automatic] +synonym: "renal pelvis mucosa of organ" EXACT [OBOL:automatic] +synonym: "renal pelvis mucous membrane" EXACT [OBOL:automatic] +synonym: "renal pelvis organ mucosa" EXACT [OBOL:automatic] +synonym: "tunica mucosa pelvis renalis" EXACT LATIN [FMA:17931, FMA:TA] +xref: FMA:17931 +xref: http://www.snomedbrowser.com/Codes/Details/243482002 +is_a: UBERON:0000344 ! mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001224 ! renal pelvis +relationship: part_of UBERON:0001224 ! renal pelvis + +[Term] +id: UBERON:0005007 +name: mucosa of major calyx +def: "A mucosa that is part of a major calyx [Automatically generated definition]." [OBOL:automatic] +synonym: "major calix mucosa" EXACT [OBOL:automatic] +synonym: "major calix mucosa of organ" EXACT [OBOL:automatic] +synonym: "major calix mucous membrane" EXACT [OBOL:automatic] +synonym: "major calix organ mucosa" EXACT [OBOL:automatic] +synonym: "major calyx mucosa" EXACT [OBOL:automatic] +synonym: "major calyx mucosa of organ" EXACT [OBOL:automatic] +synonym: "major calyx mucous membrane" EXACT [OBOL:automatic] +synonym: "major calyx organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of major calix" EXACT [OBOL:automatic] +synonym: "mucosa of organ of major calix" EXACT [OBOL:automatic] +synonym: "mucosa of organ of major calyx" EXACT [OBOL:automatic] +synonym: "mucous membrane of major calix" EXACT [OBOL:automatic] +synonym: "mucous membrane of major calyx" EXACT [OBOL:automatic] +synonym: "organ mucosa of major calix" EXACT [OBOL:automatic] +synonym: "organ mucosa of major calyx" EXACT [OBOL:automatic] +xref: FMA:17934 +is_a: UBERON:0004797 ! blood vessel layer +is_a: UBERON:0005006 ! mucosa of renal pelvis +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001226 ! major calyx +relationship: part_of UBERON:0001226 ! major calyx + +[Term] +id: UBERON:0005008 +name: mucosa of minor calyx +def: "A mucosa that is part of a minor calyx [Automatically generated definition]." [OBOL:automatic] +synonym: "minor calix mucosa" EXACT [OBOL:automatic] +synonym: "minor calix mucosa of organ" EXACT [OBOL:automatic] +synonym: "minor calix mucous membrane" EXACT [OBOL:automatic] +synonym: "minor calix organ mucosa" EXACT [OBOL:automatic] +synonym: "minor calyx mucosa" EXACT [OBOL:automatic] +synonym: "minor calyx mucosa of organ" EXACT [OBOL:automatic] +synonym: "minor calyx mucous membrane" EXACT [OBOL:automatic] +synonym: "minor calyx organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of minor calix" EXACT [OBOL:automatic] +synonym: "mucosa of organ of minor calix" EXACT [OBOL:automatic] +synonym: "mucosa of organ of minor calyx" EXACT [OBOL:automatic] +synonym: "mucous membrane of minor calix" EXACT [OBOL:automatic] +synonym: "mucous membrane of minor calyx" EXACT [OBOL:automatic] +synonym: "organ mucosa of minor calix" EXACT [OBOL:automatic] +synonym: "organ mucosa of minor calyx" EXACT [OBOL:automatic] +xref: FMA:17937 +is_a: UBERON:0004797 ! blood vessel layer +is_a: UBERON:0005006 ! mucosa of renal pelvis +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001227 ! minor calyx +relationship: part_of UBERON:0001227 ! minor calyx + +[Term] +id: UBERON:0005009 +name: mucosa of trigone of urinary bladder +def: "A mucosa that is part of a trigone of urinary bladder [Automatically generated definition]." [OBOL:automatic] +synonym: "deep trigone mucosa" EXACT [OBOL:automatic] +synonym: "deep trigone mucosa of organ" EXACT [OBOL:automatic] +synonym: "deep trigone mucous membrane" EXACT [OBOL:automatic] +synonym: "deep trigone organ mucosa" EXACT [OBOL:automatic] +synonym: "Lieutaud ' s trigone mucosa" EXACT [OBOL:automatic] +synonym: "Lieutaud ' s trigone mucosa of organ" EXACT [OBOL:automatic] +synonym: "Lieutaud ' s trigone mucous membrane" EXACT [OBOL:automatic] +synonym: "Lieutaud ' s trigone organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of deep trigone" EXACT [OBOL:automatic] +synonym: "mucosa of Lieutaud ' s trigone" EXACT [OBOL:automatic] +synonym: "mucosa of organ of deep trigone" EXACT [OBOL:automatic] +synonym: "mucosa of organ of Lieutaud ' s trigone" EXACT [OBOL:automatic] +synonym: "mucosa of organ of trigone of bladder" EXACT [OBOL:automatic] +synonym: "mucosa of organ of trigone of urinary bladder" EXACT [OBOL:automatic] +synonym: "mucosa of organ of urinary bladder trigone" EXACT [OBOL:automatic] +synonym: "mucosa of organ of vesical trigone" EXACT [OBOL:automatic] +synonym: "mucosa of trigone of bladder" EXACT [OBOL:automatic] +synonym: "mucosa of urinary bladder trigone" EXACT [OBOL:automatic] +synonym: "mucosa of vesical trigone" EXACT [OBOL:automatic] +synonym: "mucous membrane of deep trigone" EXACT [OBOL:automatic] +synonym: "mucous membrane of Lieutaud ' s trigone" EXACT [OBOL:automatic] +synonym: "mucous membrane of trigone of bladder" EXACT [OBOL:automatic] +synonym: "mucous membrane of trigone of urinary bladder" EXACT [OBOL:automatic] +synonym: "mucous membrane of urinary bladder trigone" EXACT [OBOL:automatic] +synonym: "mucous membrane of vesical trigone" EXACT [OBOL:automatic] +synonym: "organ mucosa of deep trigone" EXACT [OBOL:automatic] +synonym: "organ mucosa of Lieutaud ' s trigone" EXACT [OBOL:automatic] +synonym: "organ mucosa of trigone of bladder" EXACT [OBOL:automatic] +synonym: "organ mucosa of trigone of urinary bladder" EXACT [OBOL:automatic] +synonym: "organ mucosa of urinary bladder trigone" EXACT [OBOL:automatic] +synonym: "organ mucosa of vesical trigone" EXACT [OBOL:automatic] +synonym: "trigone of bladder mucosa" EXACT [OBOL:automatic] +synonym: "trigone of bladder mucosa of organ" EXACT [OBOL:automatic] +synonym: "trigone of bladder mucous membrane" EXACT [OBOL:automatic] +synonym: "trigone of bladder organ mucosa" EXACT [OBOL:automatic] +synonym: "trigone of urinary bladder mucosa" EXACT [OBOL:automatic] +synonym: "trigone of urinary bladder mucosa of organ" EXACT [OBOL:automatic] +synonym: "trigone of urinary bladder mucous membrane" EXACT [OBOL:automatic] +synonym: "trigone of urinary bladder organ mucosa" EXACT [OBOL:automatic] +synonym: "urinary bladder trigone mucosa" EXACT [OBOL:automatic] +synonym: "urinary bladder trigone mucosa of organ" EXACT [OBOL:automatic] +synonym: "urinary bladder trigone mucous membrane" EXACT [OBOL:automatic] +synonym: "urinary bladder trigone organ mucosa" EXACT [OBOL:automatic] +synonym: "vesical trigone mucosa" EXACT [OBOL:automatic] +synonym: "vesical trigone mucosa of organ" EXACT [OBOL:automatic] +synonym: "vesical trigone mucous membrane" EXACT [OBOL:automatic] +synonym: "vesical trigone organ mucosa" EXACT [OBOL:automatic] +xref: FMA:17847 +is_a: UBERON:0001259 ! mucosa of urinary bladder +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001257 ! trigone of urinary bladder +relationship: part_of UBERON:0001257 ! trigone of urinary bladder + +[Term] +id: UBERON:0005010 +name: mucosa of neck of urinary bladder +def: "A mucosa that is part of a neck of urinary bladder [Automatically generated definition]." [OBOL:automatic] +synonym: "bladder neck mucosa" EXACT [OBOL:automatic] +synonym: "bladder neck mucosa of organ" EXACT [OBOL:automatic] +synonym: "bladder neck mucous membrane" EXACT [OBOL:automatic] +synonym: "bladder neck organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of bladder neck" EXACT [OBOL:automatic] +synonym: "mucosa of neck of bladder" EXACT [OBOL:automatic] +synonym: "mucosa of organ of bladder neck" EXACT [OBOL:automatic] +synonym: "mucosa of organ of neck of bladder" EXACT [OBOL:automatic] +synonym: "mucosa of organ of neck of urinary bladder" EXACT [OBOL:automatic] +synonym: "mucosa of organ of urinary bladder neck" EXACT [OBOL:automatic] +synonym: "mucosa of organ of vesical neck" EXACT [OBOL:automatic] +synonym: "mucosa of urinary bladder neck" EXACT [OBOL:automatic] +synonym: "mucosa of vesical neck" EXACT [OBOL:automatic] +synonym: "mucous membrane of bladder neck" EXACT [OBOL:automatic] +synonym: "mucous membrane of neck of bladder" EXACT [OBOL:automatic] +synonym: "mucous membrane of neck of urinary bladder" EXACT [OBOL:automatic] +synonym: "mucous membrane of urinary bladder neck" EXACT [OBOL:automatic] +synonym: "mucous membrane of vesical neck" EXACT [OBOL:automatic] +synonym: "neck of bladder mucosa" EXACT [OBOL:automatic] +synonym: "neck of bladder mucosa of organ" EXACT [OBOL:automatic] +synonym: "neck of bladder mucous membrane" EXACT [OBOL:automatic] +synonym: "neck of bladder organ mucosa" EXACT [OBOL:automatic] +synonym: "neck of urinary bladder mucosa" EXACT [OBOL:automatic] +synonym: "neck of urinary bladder mucosa of organ" EXACT [OBOL:automatic] +synonym: "neck of urinary bladder mucous membrane" EXACT [OBOL:automatic] +synonym: "neck of urinary bladder organ mucosa" EXACT [OBOL:automatic] +synonym: "organ mucosa of bladder neck" EXACT [OBOL:automatic] +synonym: "organ mucosa of neck of bladder" EXACT [OBOL:automatic] +synonym: "organ mucosa of neck of urinary bladder" EXACT [OBOL:automatic] +synonym: "organ mucosa of urinary bladder neck" EXACT [OBOL:automatic] +synonym: "organ mucosa of vesical neck" EXACT [OBOL:automatic] +synonym: "urinary bladder neck mucosa" EXACT [OBOL:automatic] +synonym: "urinary bladder neck mucosa of organ" EXACT [OBOL:automatic] +synonym: "urinary bladder neck mucous membrane" EXACT [OBOL:automatic] +synonym: "vesical neck mucosa" EXACT [OBOL:automatic] +synonym: "vesical neck mucosa of organ" EXACT [OBOL:automatic] +synonym: "vesical neck mucous membrane" EXACT [OBOL:automatic] +synonym: "vesical neck organ mucosa" EXACT [OBOL:automatic] +xref: FMA:17846 +is_a: UBERON:0001259 ! mucosa of urinary bladder +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001258 ! neck of urinary bladder +relationship: part_of UBERON:0001258 ! neck of urinary bladder + +[Term] +id: UBERON:0005011 +name: mucosa of right uterine tube +def: "A mucosa that is part of a right uterine tube [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of organ of right fallopian tube" EXACT [OBOL:automatic] +synonym: "mucosa of organ of right oviduct" EXACT [OBOL:automatic] +synonym: "mucosa of organ of right uterine tube" EXACT [OBOL:automatic] +synonym: "mucosa of right fallopian tube" EXACT [OBOL:automatic] +synonym: "mucosa of right oviduct" EXACT [OBOL:automatic] +synonym: "mucous membrane of right fallopian tube" EXACT [OBOL:automatic] +synonym: "mucous membrane of right oviduct" EXACT [OBOL:automatic] +synonym: "mucous membrane of right uterine tube" EXACT [OBOL:automatic] +synonym: "organ mucosa of right fallopian tube" EXACT [OBOL:automatic] +synonym: "organ mucosa of right oviduct" EXACT [OBOL:automatic] +synonym: "organ mucosa of right uterine tube" EXACT [OBOL:automatic] +synonym: "right fallopian tube mucosa" EXACT [OBOL:automatic] +synonym: "right fallopian tube mucosa of organ" EXACT [OBOL:automatic] +synonym: "right fallopian tube mucous membrane" EXACT [OBOL:automatic] +synonym: "right fallopian tube organ mucosa" EXACT [OBOL:automatic] +synonym: "right oviduct mucosa" EXACT [OBOL:automatic] +synonym: "right oviduct mucosa of organ" EXACT [OBOL:automatic] +synonym: "right oviduct mucous membrane" EXACT [OBOL:automatic] +synonym: "right oviduct organ mucosa" EXACT [OBOL:automatic] +synonym: "right uterine tube mucosa" EXACT [OBOL:automatic] +synonym: "right uterine tube mucosa of organ" EXACT [OBOL:automatic] +synonym: "right uterine tube mucous membrane" EXACT [OBOL:automatic] +synonym: "right uterine tube organ mucosa" EXACT [OBOL:automatic] +xref: FMA:18452 +is_a: UBERON:0005048 ! mucosa of uterine tube +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001302 ! right uterine tube +relationship: part_of UBERON:0001302 ! right uterine tube + +[Term] +id: UBERON:0005012 +name: mucosa of left uterine tube +def: "A mucosa that is part of a left uterine tube [Automatically generated definition]." [OBOL:automatic] +synonym: "left fallopian tube mucosa" EXACT [OBOL:automatic] +synonym: "left fallopian tube mucosa of organ" EXACT [OBOL:automatic] +synonym: "left fallopian tube mucous membrane" EXACT [OBOL:automatic] +synonym: "left fallopian tube organ mucosa" EXACT [OBOL:automatic] +synonym: "left oviduct mucosa" EXACT [OBOL:automatic] +synonym: "left oviduct mucosa of organ" EXACT [OBOL:automatic] +synonym: "left oviduct mucous membrane" EXACT [OBOL:automatic] +synonym: "left oviduct organ mucosa" EXACT [OBOL:automatic] +synonym: "left uterine tube mucosa" EXACT [OBOL:automatic] +synonym: "left uterine tube mucosa of organ" EXACT [OBOL:automatic] +synonym: "left uterine tube mucous membrane" EXACT [OBOL:automatic] +synonym: "left uterine tube organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of left fallopian tube" EXACT [OBOL:automatic] +synonym: "mucosa of left oviduct" EXACT [OBOL:automatic] +synonym: "mucosa of organ of left fallopian tube" EXACT [OBOL:automatic] +synonym: "mucosa of organ of left oviduct" EXACT [OBOL:automatic] +synonym: "mucosa of organ of left uterine tube" EXACT [OBOL:automatic] +synonym: "mucous membrane of left fallopian tube" EXACT [OBOL:automatic] +synonym: "mucous membrane of left oviduct" EXACT [OBOL:automatic] +synonym: "mucous membrane of left uterine tube" EXACT [OBOL:automatic] +synonym: "organ mucosa of left fallopian tube" EXACT [OBOL:automatic] +synonym: "organ mucosa of left oviduct" EXACT [OBOL:automatic] +synonym: "organ mucosa of left uterine tube" EXACT [OBOL:automatic] +xref: FMA:18453 +is_a: UBERON:0005048 ! mucosa of uterine tube +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001303 ! left uterine tube +relationship: part_of UBERON:0001303 ! left uterine tube + +[Term] +id: UBERON:0005013 +name: mucosa of male urethra +def: "A mucosa that is part of a male urethra [Automatically generated definition]." [OBOL:automatic] +synonym: "male urethra mucosa" EXACT [OBOL:automatic] +synonym: "male urethra mucosa of organ" EXACT [OBOL:automatic] +synonym: "male urethra mucous membrane" EXACT [OBOL:automatic] +synonym: "male urethra organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of organ of male urethra" EXACT [OBOL:automatic] +synonym: "mucous membrane of male urethra" EXACT [OBOL:automatic] +synonym: "organ mucosa of male urethra" EXACT [OBOL:automatic] +xref: FMA:239937 +is_a: UBERON:0012299 ! mucosa of urethra +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001333 ! male urethra +relationship: part_of UBERON:0001333 ! male urethra + +[Term] +id: UBERON:0005014 +name: mucosa of female urethra +def: "A mucosa that is part of a female urethra [Automatically generated definition]." [OBOL:automatic] +synonym: "female urethra mucosa" EXACT [OBOL:automatic] +synonym: "female urethra mucosa of organ" EXACT [OBOL:automatic] +synonym: "female urethra mucous membrane" EXACT [OBOL:automatic] +synonym: "female urethra organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of organ of female urethra" EXACT [OBOL:automatic] +synonym: "mucous membrane of female urethra" EXACT [OBOL:automatic] +synonym: "organ mucosa of female urethra" EXACT [OBOL:automatic] +xref: FMA:239940 +is_a: UBERON:0012299 ! mucosa of urethra +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001334 ! female urethra +relationship: part_of UBERON:0001334 ! female urethra + +[Term] +id: UBERON:0005015 +name: mucosa of prostatic urethra +def: "A mucosa that is part of a prostatic urethra [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of organ of prostatic part of urethra" EXACT [OBOL:automatic] +synonym: "mucosa of organ of prostatic urethra" EXACT [OBOL:automatic] +synonym: "mucosa of prostatic part of urethra" EXACT [OBOL:automatic] +synonym: "mucous membrane of prostatic part of urethra" EXACT [OBOL:automatic] +synonym: "mucous membrane of prostatic urethra" EXACT [OBOL:automatic] +synonym: "organ mucosa of prostatic part of urethra" EXACT [OBOL:automatic] +synonym: "organ mucosa of prostatic urethra" EXACT [OBOL:automatic] +synonym: "prostatic part of urethra mucosa" EXACT [OBOL:automatic] +synonym: "prostatic part of urethra mucosa of organ" EXACT [OBOL:automatic] +synonym: "prostatic part of urethra mucous membrane" EXACT [OBOL:automatic] +synonym: "prostatic part of urethra organ mucosa" EXACT [OBOL:automatic] +synonym: "prostatic urethra mucosa" EXACT [OBOL:automatic] +synonym: "prostatic urethra mucosa of organ" EXACT [OBOL:automatic] +synonym: "prostatic urethra mucous membrane" EXACT [OBOL:automatic] +synonym: "prostatic urethra organ mucosa" EXACT [OBOL:automatic] +synonym: "prostatic urethral mucosa" EXACT [FMA:77079] +synonym: "tunica mucosa urethrae prosticae" EXACT LATIN [FMA:77079, FMA:TA] +xref: FMA:77079 +is_a: UBERON:0005013 ! mucosa of male urethra +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001335 ! prostatic urethra +relationship: part_of UBERON:0001335 ! prostatic urethra + +[Term] +id: UBERON:0005016 +name: mucosa of intermediate urethra +def: "A mucosa that is part of a membranous urethra [Automatically generated definition]." [OBOL:automatic] +synonym: "intermediate part of urethra mucosa" EXACT [OBOL:automatic] +synonym: "intermediate part of urethra mucosa of organ" EXACT [OBOL:automatic] +synonym: "intermediate part of urethra mucous membrane" EXACT [OBOL:automatic] +synonym: "intermediate part of urethra organ mucosa" EXACT [OBOL:automatic] +synonym: "intermediate urethra mucosa" EXACT [OBOL:automatic] +synonym: "intermediate urethra mucosa of organ" EXACT [OBOL:automatic] +synonym: "intermediate urethra mucous membrane" EXACT [OBOL:automatic] +synonym: "intermediate urethra organ mucosa" EXACT [OBOL:automatic] +synonym: "intermediate urethral mucosa" EXACT [FMA:77085] +synonym: "membranous part of urethra mucosa" EXACT [OBOL:automatic] +synonym: "membranous part of urethra mucosa of organ" EXACT [OBOL:automatic] +synonym: "membranous part of urethra mucous membrane" EXACT [OBOL:automatic] +synonym: "membranous part of urethra organ mucosa" EXACT [OBOL:automatic] +synonym: "membranous urethra mucosa" EXACT [OBOL:automatic] +synonym: "membranous urethra mucosa of organ" EXACT [OBOL:automatic] +synonym: "membranous urethra mucous membrane" EXACT [OBOL:automatic] +synonym: "membranous urethra organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of intermediate part of urethra" EXACT [OBOL:automatic] +synonym: "mucosa of membranous part of urethra" EXACT [OBOL:automatic] +synonym: "mucosa of membranous urethra" EXACT [OBOL:automatic] +synonym: "mucosa of organ of intermediate part of urethra" EXACT [OBOL:automatic] +synonym: "mucosa of organ of intermediate urethra" EXACT [OBOL:automatic] +synonym: "mucosa of organ of membranous part of urethra" EXACT [OBOL:automatic] +synonym: "mucosa of organ of membranous urethra" EXACT [OBOL:automatic] +synonym: "mucosa of organ of pars membranacea (urethrae)" EXACT [OBOL:automatic] +synonym: "mucosa of pars membranacea (urethrae)" EXACT [OBOL:automatic] +synonym: "mucous membrane of intermediate part of urethra" EXACT [OBOL:automatic] +synonym: "mucous membrane of intermediate urethra" EXACT [OBOL:automatic] +synonym: "mucous membrane of membranous part of urethra" EXACT [OBOL:automatic] +synonym: "mucous membrane of membranous urethra" EXACT [OBOL:automatic] +synonym: "mucous membrane of pars membranacea (urethrae)" EXACT [OBOL:automatic] +synonym: "organ mucosa of intermediate part of urethra" EXACT [OBOL:automatic] +synonym: "organ mucosa of intermediate urethra" EXACT [OBOL:automatic] +synonym: "organ mucosa of membranous part of urethra" EXACT [OBOL:automatic] +synonym: "organ mucosa of membranous urethra" EXACT [OBOL:automatic] +synonym: "organ mucosa of pars membranacea (urethrae)" EXACT [OBOL:automatic] +synonym: "pars membranacea (urethrae) mucosa" EXACT [OBOL:automatic] +synonym: "pars membranacea (urethrae) mucosa of organ" EXACT [OBOL:automatic] +synonym: "pars membranacea (urethrae) mucous membrane" EXACT [OBOL:automatic] +synonym: "pars membranacea (urethrae) organ mucosa" EXACT [OBOL:automatic] +synonym: "tunica mucosa urethrae intermediae" EXACT LATIN [FMA:77085, FMA:TA] +xref: FMA:77085 +xref: galen:MucousMembraneOfUrethra +xref: http://www.snomedbrowser.com/Codes/Details/362229009 +is_a: UBERON:0012299 ! mucosa of urethra +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001336 ! membranous urethra of male or female +relationship: part_of UBERON:0001336 ! membranous urethra of male or female + +[Term] +id: UBERON:0005017 +name: mucosa of lacrimal sac +def: "A mucosa that is part of a lacrimal sac [Automatically generated definition]." [OBOL:automatic] +synonym: "lacrimal sac mucosa" EXACT [OBOL:automatic] +synonym: "lacrimal sac mucosa of organ" EXACT [OBOL:automatic] +synonym: "lacrimal sac mucous membrane" EXACT [OBOL:automatic] +synonym: "lacrimal sac organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of organ of lacrimal sac" EXACT [OBOL:automatic] +synonym: "mucous membrane of lacrimal sac" EXACT [OBOL:automatic] +synonym: "organ mucosa of lacrimal sac" EXACT [OBOL:automatic] +xref: FMA:72061 +is_a: UBERON:0005043 ! mucosa of nasolacrimal duct +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001351 ! lacrimal sac +relationship: part_of UBERON:0001351 ! lacrimal sac + +[Term] +id: UBERON:0005018 +name: mucosa of nasal septum +def: "A mucosa that is part of a nasal septum [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of organ of nasal septum" EXACT [OBOL:automatic] +synonym: "mucous membrane of nasal septum" EXACT [OBOL:automatic] +synonym: "nasal septum mucosa" EXACT [OBOL:automatic] +synonym: "nasal septum mucosa of organ" EXACT [OBOL:automatic] +synonym: "nasal septum mucous membrane" EXACT [OBOL:automatic] +synonym: "nasal septum organ mucosa" EXACT [OBOL:automatic] +synonym: "organ mucosa of nasal septum" EXACT [OBOL:automatic] +xref: EMAPA:36028 +xref: FMA:60113 +is_a: UBERON:0000344 ! mucosa +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001706 ! nasal septum +relationship: part_of UBERON:0001706 ! nasal septum + +[Term] +id: UBERON:0005019 +name: mucosa of palate +def: "A mucosa that is part of a palate [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of oral roof" EXACT [OBOL:automatic] +synonym: "mucosa of organ of oral roof" EXACT [OBOL:automatic] +synonym: "mucosa of organ of palate" EXACT [OBOL:automatic] +synonym: "mucosa of organ of roof of mouth" EXACT [OBOL:automatic] +synonym: "mucosa of roof of mouth" EXACT [OBOL:automatic] +synonym: "mucous membrane of oral roof" EXACT [OBOL:automatic] +synonym: "mucous membrane of palate" EXACT [OBOL:automatic] +synonym: "mucous membrane of roof of mouth" EXACT [OBOL:automatic] +synonym: "oral roof mucosa" EXACT [OBOL:automatic] +synonym: "oral roof mucosa of organ" EXACT [OBOL:automatic] +synonym: "oral roof mucous membrane" EXACT [OBOL:automatic] +synonym: "oral roof organ mucosa" EXACT [OBOL:automatic] +synonym: "organ mucosa of oral roof" EXACT [OBOL:automatic] +synonym: "organ mucosa of palate" EXACT [OBOL:automatic] +synonym: "organ mucosa of roof of mouth" EXACT [OBOL:automatic] +synonym: "palate mucosa" EXACT [OBOL:automatic] +synonym: "palate mucosa of organ" EXACT [OBOL:automatic] +synonym: "palate mucous membrane" EXACT [OBOL:automatic] +synonym: "palate organ mucosa" EXACT [OBOL:automatic] +synonym: "roof of mouth mucosa" EXACT [OBOL:automatic] +synonym: "roof of mouth mucosa of organ" EXACT [OBOL:automatic] +synonym: "roof of mouth mucous membrane" EXACT [OBOL:automatic] +synonym: "roof of mouth organ mucosa" EXACT [OBOL:automatic] +xref: FMA:59765 +is_a: UBERON:0003729 ! mouth mucosa +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001716 ! secondary palate +relationship: part_of UBERON:0001716 ! secondary palate + +[Term] +id: UBERON:0005020 +name: mucosa of tongue +def: "A mucosa that is part of a tongue [Automatically generated definition]." [OBOL:automatic] +subset: efo_slim +synonym: "lingual mucosa" EXACT [FMA:54807] +synonym: "mucosa of organ of tongue" EXACT [OBOL:automatic] +synonym: "mucous membrane of tongue" EXACT [OBOL:automatic] +synonym: "organ mucosa of tongue" EXACT [OBOL:automatic] +synonym: "tongue mucosa" EXACT [OBOL:automatic] +synonym: "tongue mucosa of organ" EXACT [OBOL:automatic] +synonym: "tongue mucous membrane" EXACT [OBOL:automatic] +synonym: "tongue organ mucosa" EXACT [OBOL:automatic] +synonym: "tunica mucosa linguae" EXACT LATIN [FMA:54807, FMA:TA] +xref: EFO:0002553 +xref: FMA:54807 +xref: http://www.snomedbrowser.com/Codes/Details/362092002 +is_a: UBERON:0003729 ! mouth mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001723 ! tongue +relationship: part_of UBERON:0001723 ! tongue + +[Term] +id: UBERON:0005021 +name: mucosa of sphenoidal sinus +def: "A mucosa that is part of a sphenoidal sinus [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of organ of sphenoid sinus" EXACT [OBOL:automatic] +synonym: "mucosa of organ of sphenoidal sinus" EXACT [OBOL:automatic] +synonym: "mucosa of sphenoid sinus" EXACT [OBOL:automatic] +synonym: "mucous membrane of sphenoid sinus" EXACT [OBOL:automatic] +synonym: "mucous membrane of sphenoidal sinus" EXACT [OBOL:automatic] +synonym: "organ mucosa of sphenoid sinus" EXACT [OBOL:automatic] +synonym: "organ mucosa of sphenoidal sinus" EXACT [OBOL:automatic] +synonym: "sphenoid sinus mucosa" EXACT [OBOL:automatic] +synonym: "sphenoid sinus mucosa of organ" EXACT [OBOL:automatic] +synonym: "sphenoid sinus mucous membrane" EXACT [OBOL:automatic] +synonym: "sphenoid sinus organ mucosa" EXACT [OBOL:automatic] +synonym: "sphenoidal sinus mucosa" EXACT [OBOL:automatic] +synonym: "sphenoidal sinus mucosa of organ" EXACT [OBOL:automatic] +synonym: "sphenoidal sinus mucous membrane" EXACT [OBOL:automatic] +synonym: "sphenoidal sinus organ mucosa" EXACT [OBOL:automatic] +xref: FMA:59775 +xref: http://www.snomedbrowser.com/Codes/Details/43774000 +is_a: UBERON:0000344 ! mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: located_in UBERON:0001724 ! sphenoidal sinus +relationship: located_in UBERON:0001724 ! sphenoidal sinus +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0005022 +name: mucosa of nasopharynx +def: "A mucosa that is part of a nasopharynx [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of nasal part of pharynx" EXACT [OBOL:automatic] +synonym: "mucosa of organ of nasal part of pharynx" EXACT [OBOL:automatic] +synonym: "mucosa of organ of nasopharynx" EXACT [OBOL:automatic] +synonym: "mucosa of organ of rhinopharynx" EXACT [OBOL:automatic] +synonym: "mucosa of rhinopharynx" EXACT [OBOL:automatic] +synonym: "mucous membrane of nasal part of pharynx" EXACT [OBOL:automatic] +synonym: "mucous membrane of nasopharynx" EXACT [OBOL:automatic] +synonym: "mucous membrane of rhinopharynx" EXACT [OBOL:automatic] +synonym: "nasal part of pharynx mucosa" EXACT [OBOL:automatic] +synonym: "nasal part of pharynx mucosa of organ" EXACT [OBOL:automatic] +synonym: "nasal part of pharynx mucous membrane" EXACT [OBOL:automatic] +synonym: "nasal part of pharynx organ mucosa" EXACT [OBOL:automatic] +synonym: "nasopharynx mucosa" EXACT [OBOL:automatic] +synonym: "nasopharynx mucosa of organ" EXACT [OBOL:automatic] +synonym: "nasopharynx mucous membrane" EXACT [OBOL:automatic] +synonym: "nasopharynx organ mucosa" EXACT [OBOL:automatic] +synonym: "organ mucosa of nasal part of pharynx" EXACT [OBOL:automatic] +synonym: "organ mucosa of nasopharynx" EXACT [OBOL:automatic] +synonym: "organ mucosa of rhinopharynx" EXACT [OBOL:automatic] +synonym: "rhinopharynx mucosa" EXACT [OBOL:automatic] +synonym: "rhinopharynx mucosa of organ" EXACT [OBOL:automatic] +synonym: "rhinopharynx mucous membrane" EXACT [OBOL:automatic] +synonym: "rhinopharynx organ mucosa" EXACT [OBOL:automatic] +xref: FMA:54971 +xref: http://www.snomedbrowser.com/Codes/Details/361938001 +is_a: UBERON:0000355 ! pharyngeal mucosa +is_a: UBERON:0000379 ! tracheal mucosa +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001728 ! nasopharynx +relationship: part_of UBERON:0001728 ! nasopharynx + +[Term] +id: UBERON:0005023 +name: mucosa of oropharynx +def: "A mucosa that is part of a oropharynx [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of oral part of pharynx" EXACT [OBOL:automatic] +synonym: "mucosa of organ of oral part of pharynx" EXACT [OBOL:automatic] +synonym: "mucosa of organ of oropharynx" EXACT [OBOL:automatic] +synonym: "mucous membrane of oral part of pharynx" EXACT [OBOL:automatic] +synonym: "mucous membrane of oropharynx" EXACT [OBOL:automatic] +synonym: "oral part of pharynx mucosa" EXACT [OBOL:automatic] +synonym: "oral part of pharynx mucosa of organ" EXACT [OBOL:automatic] +synonym: "oral part of pharynx mucous membrane" EXACT [OBOL:automatic] +synonym: "oral part of pharynx organ mucosa" EXACT [OBOL:automatic] +synonym: "organ mucosa of oral part of pharynx" EXACT [OBOL:automatic] +synonym: "organ mucosa of oropharynx" EXACT [OBOL:automatic] +synonym: "oropharynx mucosa" EXACT [OBOL:automatic] +synonym: "oropharynx mucosa of organ" EXACT [OBOL:automatic] +synonym: "oropharynx mucous membrane" EXACT [OBOL:automatic] +synonym: "oropharynx organ mucosa" EXACT [OBOL:automatic] +xref: FMA:54933 +xref: http://www.snomedbrowser.com/Codes/Details/144632009 +is_a: UBERON:0000355 ! pharyngeal mucosa +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004786 ! gastrointestinal system mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001729 ! oropharynx +relationship: part_of UBERON:0001729 ! oropharynx + +[Term] +id: UBERON:0005024 +name: mucosa of soft palate +def: "A mucosa that is part of a soft palate [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of organ of soft palate" EXACT [OBOL:automatic] +synonym: "mucous membrane of soft palate" EXACT [OBOL:automatic] +synonym: "organ mucosa of soft palate" EXACT [OBOL:automatic] +synonym: "soft palate mucosa" EXACT [OBOL:automatic] +synonym: "soft palate mucosa of organ" EXACT [OBOL:automatic] +synonym: "soft palate mucous membrane" EXACT [OBOL:automatic] +synonym: "soft palate organ mucosa" EXACT [OBOL:automatic] +xref: FMA:59784 +xref: http://en.wikipedia.org/wiki/Mucous_membrane_of_the_soft_palate +xref: http://www.snomedbrowser.com/Codes/Details/245842003 +is_a: UBERON:0005019 ! mucosa of palate +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001733 ! soft palate +relationship: part_of UBERON:0001733 ! soft palate + +[Term] +id: UBERON:0005025 +name: mucosa of uvula +def: "A mucosa that is part of a uvula [Automatically generated definition]." [OBOL:automatic] +synonym: "uvula mucosa" EXACT [FMA:60030] +xref: FMA:60030 +is_a: UBERON:0005024 ! mucosa of soft palate +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001734 ! palatine uvula +relationship: part_of UBERON:0001734 ! palatine uvula + +[Term] +id: UBERON:0005026 +name: mucosa of middle ear +def: "A mucosa that is part of a middle ear [Automatically generated definition]." [OBOL:automatic] +synonym: "middle ear mucosa" EXACT [OBOL:automatic] +synonym: "middle ear mucosa of organ" EXACT [OBOL:automatic] +synonym: "middle ear mucous membrane" EXACT [OBOL:automatic] +synonym: "middle ear organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of organ of middle ear" EXACT [OBOL:automatic] +synonym: "mucosa of tympanic cavity" EXACT [FMA:59663] +synonym: "mucous membrane of middle ear" EXACT [OBOL:automatic] +synonym: "organ mucosa of middle ear" EXACT [OBOL:automatic] +synonym: "tunica mucosa cavitatis tympanicae" EXACT LATIN [FMA:59663, FMA:TA] +xref: CALOHA:TS-0631 +xref: FMA:59663 +is_a: UBERON:0000344 ! mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001756 ! middle ear +relationship: part_of UBERON:0001756 ! middle ear + +[Term] +id: UBERON:0005027 +name: mucosa of frontal sinus +def: "A mucosa that is part of a frontal sinus [Automatically generated definition]." [OBOL:automatic] +synonym: "frontal sinus mucosa" EXACT [OBOL:automatic] +synonym: "frontal sinus mucosa of organ" EXACT [OBOL:automatic] +synonym: "frontal sinus mucous membrane" EXACT [OBOL:automatic] +synonym: "frontal sinus organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of organ of frontal sinus" EXACT [OBOL:automatic] +synonym: "mucous membrane of frontal sinus" EXACT [OBOL:automatic] +synonym: "organ mucosa of frontal sinus" EXACT [OBOL:automatic] +xref: FMA:59774 +xref: http://www.snomedbrowser.com/Codes/Details/368909005 +is_a: UBERON:0000344 ! mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: located_in UBERON:0001760 ! frontal sinus +relationship: located_in UBERON:0001760 ! frontal sinus + +[Term] +id: UBERON:0005028 +name: mucosa of maxillary sinus +def: "A mucosa that is part of a maxillary sinus [Automatically generated definition]." [OBOL:automatic] +synonym: "antrum of highmore mucosa" EXACT [OBOL:automatic] +synonym: "antrum of highmore mucosa of organ" EXACT [OBOL:automatic] +synonym: "antrum of highmore mucous membrane" EXACT [OBOL:automatic] +synonym: "antrum of highmore organ mucosa" EXACT [OBOL:automatic] +synonym: "maxillary sinus mucosa" EXACT [OBOL:automatic] +synonym: "maxillary sinus mucosa of organ" EXACT [OBOL:automatic] +synonym: "maxillary sinus mucous membrane" EXACT [OBOL:automatic] +synonym: "maxillary sinus organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of antrum of highmore" EXACT [OBOL:automatic] +synonym: "mucosa of organ of antrum of highmore" EXACT [OBOL:automatic] +synonym: "mucosa of organ of maxillary sinus" EXACT [OBOL:automatic] +synonym: "mucous membrane of antrum of highmore" EXACT [OBOL:automatic] +synonym: "mucous membrane of maxillary sinus" EXACT [OBOL:automatic] +synonym: "organ mucosa of antrum of highmore" EXACT [OBOL:automatic] +synonym: "organ mucosa of maxillary sinus" EXACT [OBOL:automatic] +xref: FMA:59773 +xref: http://www.snomedbrowser.com/Codes/Details/368908002 +is_a: UBERON:0000344 ! mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: located_in UBERON:0001764 ! maxillary sinus +relationship: located_in UBERON:0001764 ! maxillary sinus + +[Term] +id: UBERON:0005029 +name: mucosa of lacrimal canaliculus +def: "A mucosa that is part of a lacrimal canaliculus [Automatically generated definition]." [OBOL:automatic] +synonym: "lacrimal canalicular mucosa" EXACT [FMA:85366] +synonym: "lacrimal canaliculus mucosa" EXACT [OBOL:automatic] +synonym: "lacrimal canaliculus mucosa of organ" EXACT [OBOL:automatic] +synonym: "lacrimal canaliculus mucous membrane" EXACT [OBOL:automatic] +synonym: "lacrimal canaliculus organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of organ of lacrimal canaliculus" EXACT [OBOL:automatic] +synonym: "mucous membrane of lacrimal canaliculus" EXACT [OBOL:automatic] +synonym: "organ mucosa of lacrimal canaliculus" EXACT [OBOL:automatic] +xref: FMA:85366 +is_a: UBERON:0000344 ! mucosa +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001770 ! lacrimal canaliculus +relationship: part_of UBERON:0001770 ! lacrimal canaliculus + +[Term] +id: UBERON:0005030 +name: mucosa of paranasal sinus +def: "A mucosa that adjacent_to a paranasal sinus." [OBOL:automatic] +synonym: "paranasal sinus mucosa" EXACT [OBOL:automatic] +xref: FMA:59772 +is_a: UBERON:0000344 ! mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: adjacent_to UBERON:0001825 ! paranasal sinus +relationship: adjacent_to UBERON:0001825 ! paranasal sinus + +[Term] +id: UBERON:0005031 +name: mucosa of upper lip +def: "A mucosa that is part of a upper lip [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of organ of upper lip" EXACT [OBOL:automatic] +synonym: "mucous membrane of upper lip" EXACT [OBOL:automatic] +synonym: "organ mucosa of upper lip" EXACT [OBOL:automatic] +synonym: "upper labial mucosa" EXACT [UBERON:cjm] +synonym: "upper lip mucosa" EXACT [OBOL:automatic] +synonym: "upper lip mucosa of organ" EXACT [OBOL:automatic] +synonym: "upper lip mucous membrane" EXACT [OBOL:automatic] +synonym: "upper lip organ mucosa" EXACT [OBOL:automatic] +xref: FMA:59832 +xref: http://linkedlifedata.com/resource/umls/id/C0226933 +xref: http://www.snomedbrowser.com/Codes/Details/362088009 +xref: NCIT:C12224 +xref: UMLS:C0226933 {source="ncithesaurus:Mucosa_of_the_Upper_Lip"} +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0036294 ! mucosa of lip +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001834 ! upper lip +relationship: part_of UBERON:0001834 ! upper lip + +[Term] +id: UBERON:0005032 +name: mucosa of lower lip +def: "A mucosa that is part of a lower lip [Automatically generated definition]." [OBOL:automatic] +synonym: "lower labial mucosa" EXACT [UBERON:cjm] +synonym: "lower lip mucosa" EXACT [OBOL:automatic] +synonym: "lower lip mucosa of organ" EXACT [OBOL:automatic] +synonym: "lower lip mucous membrane" EXACT [OBOL:automatic] +synonym: "lower lip organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of organ of lower lip" EXACT [OBOL:automatic] +synonym: "mucous membrane of lower lip" EXACT [OBOL:automatic] +synonym: "organ mucosa of lower lip" EXACT [OBOL:automatic] +xref: FMA:59833 +xref: http://linkedlifedata.com/resource/umls/id/C0226939 +xref: http://www.snomedbrowser.com/Codes/Details/362089001 +xref: NCIT:C12225 +xref: UMLS:C0226939 {source="ncithesaurus:Mucosa_of_the_Lower_Lip"} +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0036294 ! mucosa of lip +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001835 ! lower lip +relationship: part_of UBERON:0001835 ! lower lip + +[Term] +id: UBERON:0005033 +name: mucosa of gallbladder +def: "A mucosa that is part of a gallbladder [Automatically generated definition]." [OBOL:automatic] +synonym: "gall bladder mucosa" EXACT [OBOL:automatic] +synonym: "gall bladder mucosa of organ" EXACT [OBOL:automatic] +synonym: "gall bladder mucous membrane" EXACT [OBOL:automatic] +synonym: "gall bladder organ mucosa" EXACT [OBOL:automatic] +synonym: "gallbladder mucosa" EXACT [OBOL:automatic] +synonym: "gallbladder mucosa of organ" EXACT [OBOL:automatic] +synonym: "gallbladder mucous membrane" EXACT [OBOL:automatic] +synonym: "gallbladder organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of gall bladder" EXACT [OBOL:automatic] +synonym: "mucosa of organ of gall bladder" EXACT [OBOL:automatic] +synonym: "mucosa of organ of gallbladder" EXACT [OBOL:automatic] +synonym: "mucous membrane of gall bladder" EXACT [OBOL:automatic] +synonym: "mucous membrane of gallbladder" EXACT [OBOL:automatic] +synonym: "organ mucosa of gall bladder" EXACT [OBOL:automatic] +synonym: "organ mucosa of gallbladder" EXACT [OBOL:automatic] +synonym: "tunica mucosa (vesica biliaris)" EXACT [FMA:14662] +synonym: "tunica mucosa vesicae biliaris" EXACT LATIN [FMA:14662, FMA:TA] +xref: FMA:14662 +xref: http://www.snomedbrowser.com/Codes/Details/362196002 +is_a: UBERON:0000344 ! mucosa +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0002110 ! gall bladder +relationship: part_of UBERON:0002110 ! gall bladder + +[Term] +id: UBERON:0005034 +name: mucosa of right main bronchus +def: "A mucosa that is part of a right main bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of organ of right bronchus" EXACT [OBOL:automatic] +synonym: "mucosa of organ of right main bronchus" EXACT [OBOL:automatic] +synonym: "mucosa of organ of right principal bronchus" EXACT [OBOL:automatic] +synonym: "mucosa of right bronchus" EXACT [OBOL:automatic] +synonym: "mucosa of right principal bronchus" EXACT [OBOL:automatic] +synonym: "mucous membrane of right bronchus" EXACT [OBOL:automatic] +synonym: "mucous membrane of right main bronchus" EXACT [OBOL:automatic] +synonym: "mucous membrane of right principal bronchus" EXACT [OBOL:automatic] +synonym: "organ mucosa of right bronchus" EXACT [OBOL:automatic] +synonym: "organ mucosa of right main bronchus" EXACT [OBOL:automatic] +synonym: "organ mucosa of right principal bronchus" EXACT [OBOL:automatic] +synonym: "right bronchus mucosa" EXACT [OBOL:automatic] +synonym: "right bronchus mucosa of organ" EXACT [OBOL:automatic] +synonym: "right bronchus mucous membrane" EXACT [OBOL:automatic] +synonym: "right bronchus organ mucosa" EXACT [OBOL:automatic] +synonym: "right main bronchial mucosa" EXACT [FMA:13137] +synonym: "right main bronchus mucosa" EXACT [OBOL:automatic] +synonym: "right main bronchus mucosa of organ" EXACT [OBOL:automatic] +synonym: "right main bronchus mucous membrane" EXACT [OBOL:automatic] +synonym: "right main bronchus organ mucosa" EXACT [OBOL:automatic] +synonym: "right principal bronchus mucosa" EXACT [OBOL:automatic] +synonym: "right principal bronchus mucosa of organ" EXACT [OBOL:automatic] +synonym: "right principal bronchus mucous membrane" EXACT [OBOL:automatic] +synonym: "right principal bronchus organ mucosa" EXACT [OBOL:automatic] +xref: FMA:13137 +is_a: UBERON:0005036 ! mucosa of main bronchus +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0002177 ! right main bronchus +relationship: part_of UBERON:0002177 ! right main bronchus + +[Term] +id: UBERON:0005035 +name: mucosa of left main bronchus +def: "A mucosa that is part of a left main bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "left bronchus mucosa" EXACT [OBOL:automatic] +synonym: "left bronchus mucosa of organ" EXACT [OBOL:automatic] +synonym: "left bronchus mucous membrane" EXACT [OBOL:automatic] +synonym: "left bronchus organ mucosa" EXACT [OBOL:automatic] +synonym: "left main bronchial mucosa" EXACT [FMA:13138] +synonym: "left main bronchus mucosa" EXACT [OBOL:automatic] +synonym: "left main bronchus mucosa of organ" EXACT [OBOL:automatic] +synonym: "left main bronchus mucous membrane" EXACT [OBOL:automatic] +synonym: "left main bronchus organ mucosa" EXACT [OBOL:automatic] +synonym: "left principal bronchus mucosa" EXACT [OBOL:automatic] +synonym: "left principal bronchus mucosa of organ" EXACT [OBOL:automatic] +synonym: "left principal bronchus mucous membrane" EXACT [OBOL:automatic] +synonym: "left principal bronchus organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of left bronchus" EXACT [OBOL:automatic] +synonym: "mucosa of left principal bronchus" EXACT [OBOL:automatic] +synonym: "mucosa of organ of left bronchus" EXACT [OBOL:automatic] +synonym: "mucosa of organ of left main bronchus" EXACT [OBOL:automatic] +synonym: "mucosa of organ of left principal bronchus" EXACT [OBOL:automatic] +synonym: "mucous membrane of left bronchus" EXACT [OBOL:automatic] +synonym: "mucous membrane of left main bronchus" EXACT [OBOL:automatic] +synonym: "mucous membrane of left principal bronchus" EXACT [OBOL:automatic] +synonym: "organ mucosa of left bronchus" EXACT [OBOL:automatic] +synonym: "organ mucosa of left main bronchus" EXACT [OBOL:automatic] +synonym: "organ mucosa of left principal bronchus" EXACT [OBOL:automatic] +xref: FMA:13138 +is_a: UBERON:0005036 ! mucosa of main bronchus +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0002178 ! left main bronchus +relationship: part_of UBERON:0002178 ! left main bronchus + +[Term] +id: UBERON:0005036 +name: mucosa of main bronchus +def: "A mucosa that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchus principalis mucosa" EXACT [OBOL:automatic] +synonym: "bronchus principalis mucosa of organ" EXACT [OBOL:automatic] +synonym: "bronchus principalis mucous membrane" EXACT [OBOL:automatic] +synonym: "bronchus principalis organ mucosa" EXACT [OBOL:automatic] +synonym: "main bronchial mucosa" EXACT [FMA:13115] +synonym: "main bronchus mucosa" EXACT [OBOL:automatic] +synonym: "main bronchus mucosa of organ" EXACT [OBOL:automatic] +synonym: "main bronchus mucous membrane" EXACT [OBOL:automatic] +synonym: "main bronchus organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of bronchus principalis" EXACT [OBOL:automatic] +synonym: "mucosa of organ of bronchus principalis" EXACT [OBOL:automatic] +synonym: "mucosa of organ of main bronchus" EXACT [OBOL:automatic] +synonym: "mucosa of organ of primary bronchus" EXACT [OBOL:automatic] +synonym: "mucosa of organ of principal bronchus" EXACT [OBOL:automatic] +synonym: "mucosa of primary bronchus" EXACT [OBOL:automatic] +synonym: "mucosa of principal bronchus" EXACT [OBOL:automatic] +synonym: "mucous membrane of bronchus principalis" EXACT [OBOL:automatic] +synonym: "mucous membrane of main bronchus" EXACT [OBOL:automatic] +synonym: "mucous membrane of primary bronchus" EXACT [OBOL:automatic] +synonym: "mucous membrane of principal bronchus" EXACT [OBOL:automatic] +synonym: "organ mucosa of bronchus principalis" EXACT [OBOL:automatic] +synonym: "organ mucosa of main bronchus" EXACT [OBOL:automatic] +synonym: "organ mucosa of primary bronchus" EXACT [OBOL:automatic] +synonym: "organ mucosa of principal bronchus" EXACT [OBOL:automatic] +synonym: "primary bronchus mucosa" EXACT [OBOL:automatic] +synonym: "primary bronchus mucosa of organ" EXACT [OBOL:automatic] +synonym: "primary bronchus mucous membrane" EXACT [OBOL:automatic] +synonym: "primary bronchus organ mucosa" EXACT [OBOL:automatic] +synonym: "principal bronchus mucosa" EXACT [OBOL:automatic] +synonym: "principal bronchus mucosa of organ" EXACT [OBOL:automatic] +synonym: "principal bronchus mucous membrane" EXACT [OBOL:automatic] +synonym: "principal bronchus organ mucosa" EXACT [OBOL:automatic] +xref: FMA:13115 +is_a: UBERON:0000410 ! bronchial mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0002182 ! main bronchus +relationship: part_of UBERON:0002182 ! main bronchus + +[Term] +id: UBERON:0005037 +name: mucosa of lobar bronchus +def: "A mucosa that is part of a lobar bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "lobar bronchial mucosa" EXACT [FMA:62668] +synonym: "lobar bronchus mucosa" EXACT [OBOL:automatic] +synonym: "lobar bronchus mucosa of organ" EXACT [OBOL:automatic] +synonym: "lobar bronchus mucous membrane" EXACT [OBOL:automatic] +synonym: "lobar bronchus organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of organ of lobar bronchus" EXACT [OBOL:automatic] +synonym: "mucosa of organ of secondary bronchus" EXACT [OBOL:automatic] +synonym: "mucosa of secondary bronchus" EXACT [OBOL:automatic] +synonym: "mucous membrane of lobar bronchus" EXACT [OBOL:automatic] +synonym: "mucous membrane of secondary bronchus" EXACT [OBOL:automatic] +synonym: "organ mucosa of lobar bronchus" EXACT [OBOL:automatic] +synonym: "organ mucosa of secondary bronchus" EXACT [OBOL:automatic] +synonym: "secondary bronchus mucosa" EXACT [OBOL:automatic] +synonym: "secondary bronchus mucosa of organ" EXACT [OBOL:automatic] +synonym: "secondary bronchus mucous membrane" EXACT [OBOL:automatic] +synonym: "secondary bronchus organ mucosa" EXACT [OBOL:automatic] +xref: FMA:62668 +is_a: UBERON:0000410 ! bronchial mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0002183 ! lobar bronchus +relationship: part_of UBERON:0002183 ! lobar bronchus + +[Term] +id: UBERON:0005038 +name: mucosa of segmental bronchus +def: "A mucosa that is part of a segmental bronchus [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of organ of segmental bronchus" EXACT [OBOL:automatic] +synonym: "mucosa of organ of tertiary bronchus" EXACT [OBOL:automatic] +synonym: "mucosa of tertiary bronchus" EXACT [OBOL:automatic] +synonym: "mucous membrane of segmental bronchus" EXACT [OBOL:automatic] +synonym: "mucous membrane of tertiary bronchus" EXACT [OBOL:automatic] +synonym: "organ mucosa of segmental bronchus" EXACT [OBOL:automatic] +synonym: "organ mucosa of tertiary bronchus" EXACT [OBOL:automatic] +synonym: "segmental bronchial mucosa" EXACT [FMA:62666] +synonym: "segmental bronchus mucosa" EXACT [OBOL:automatic] +synonym: "segmental bronchus mucosa of organ" EXACT [OBOL:automatic] +synonym: "segmental bronchus mucous membrane" EXACT [OBOL:automatic] +synonym: "segmental bronchus organ mucosa" EXACT [OBOL:automatic] +synonym: "tertiary bronchus mucosa" EXACT [OBOL:automatic] +synonym: "tertiary bronchus mucosa of organ" EXACT [OBOL:automatic] +synonym: "tertiary bronchus mucous membrane" EXACT [OBOL:automatic] +synonym: "tertiary bronchus organ mucosa" EXACT [OBOL:automatic] +xref: FMA:62666 +is_a: UBERON:0000410 ! bronchial mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0002184 ! segmental bronchus +relationship: part_of UBERON:0002184 ! segmental bronchus + +[Term] +id: UBERON:0005039 +name: mucosa of bronchiole +def: "A mucosa that is part of a bronchiole [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchiole mucosa" EXACT [OBOL:automatic] +synonym: "bronchiole mucosa of organ" EXACT [OBOL:automatic] +synonym: "bronchiole mucous membrane" EXACT [OBOL:automatic] +synonym: "bronchiole organ mucosa" EXACT [OBOL:automatic] +synonym: "lobular bronchiole mucosa" EXACT [OBOL:automatic] +synonym: "lobular bronchiole mucosa of organ" EXACT [OBOL:automatic] +synonym: "lobular bronchiole mucous membrane" EXACT [OBOL:automatic] +synonym: "lobular bronchiole organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of lobular bronchiole" EXACT [OBOL:automatic] +synonym: "mucosa of organ of bronchiole" EXACT [OBOL:automatic] +synonym: "mucosa of organ of lobular bronchiole" EXACT [OBOL:automatic] +synonym: "mucous membrane of bronchiole" EXACT [OBOL:automatic] +synonym: "mucous membrane of lobular bronchiole" EXACT [OBOL:automatic] +synonym: "organ mucosa of bronchiole" EXACT [OBOL:automatic] +synonym: "organ mucosa of lobular bronchiole" EXACT [OBOL:automatic] +xref: FMA:263230 +xref: FMA:62774 +xref: http://www.snomedbrowser.com/Codes/Details/10887006 +is_a: UBERON:0000410 ! bronchial mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0002186 ! bronchiole +relationship: part_of UBERON:0002186 ! bronchiole + +[Term] +id: UBERON:0005040 +name: mucosa of terminal bronchiole +def: "A mucosa that is part of a terminal bronchiole [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchiolus terminalis mucosa" EXACT [OBOL:automatic] +synonym: "bronchiolus terminalis mucosa of organ" EXACT [OBOL:automatic] +synonym: "bronchiolus terminalis mucous membrane" EXACT [OBOL:automatic] +synonym: "bronchiolus terminalis organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of bronchiolus terminalis" EXACT [OBOL:automatic] +synonym: "mucosa of organ of bronchiolus terminalis" EXACT [OBOL:automatic] +synonym: "mucosa of organ of terminal bronchiole" EXACT [OBOL:automatic] +synonym: "mucous membrane of bronchiolus terminalis" EXACT [OBOL:automatic] +synonym: "mucous membrane of terminal bronchiole" EXACT [OBOL:automatic] +synonym: "organ mucosa of bronchiolus terminalis" EXACT [OBOL:automatic] +synonym: "organ mucosa of terminal bronchiole" EXACT [OBOL:automatic] +synonym: "terminal bronchiole mucosa" EXACT [OBOL:automatic] +synonym: "terminal bronchiole mucosa of organ" EXACT [OBOL:automatic] +synonym: "terminal bronchiole mucous membrane" EXACT [OBOL:automatic] +synonym: "terminal bronchiole organ mucosa" EXACT [OBOL:automatic] +xref: FMA:263232 +is_a: UBERON:0005039 ! mucosa of bronchiole +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0002187 ! terminal bronchiole +relationship: part_of UBERON:0002187 ! terminal bronchiole + +[Term] +id: UBERON:0005041 +name: mucosa of respiratory bronchiole +def: "A mucosa that is part of a respiratory bronchiole [Automatically generated definition]." [OBOL:automatic] +synonym: "bronchiolus respiratorius mucosa" EXACT [OBOL:automatic] +synonym: "bronchiolus respiratorius mucosa of organ" EXACT [OBOL:automatic] +synonym: "bronchiolus respiratorius mucous membrane" EXACT [OBOL:automatic] +synonym: "bronchiolus respiratorius organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of bronchiolus respiratorius" EXACT [OBOL:automatic] +synonym: "mucosa of organ of bronchiolus respiratorius" EXACT [OBOL:automatic] +synonym: "mucosa of organ of respiratory bronchiole" EXACT [OBOL:automatic] +synonym: "mucous membrane of bronchiolus respiratorius" EXACT [OBOL:automatic] +synonym: "mucous membrane of respiratory bronchiole" EXACT [OBOL:automatic] +synonym: "organ mucosa of bronchiolus respiratorius" EXACT [OBOL:automatic] +synonym: "organ mucosa of respiratory bronchiole" EXACT [OBOL:automatic] +synonym: "respiratory bronchiole mucosa" EXACT [OBOL:automatic] +synonym: "respiratory bronchiole mucosa of organ" EXACT [OBOL:automatic] +synonym: "respiratory bronchiole mucous membrane" EXACT [OBOL:automatic] +synonym: "respiratory bronchiole organ mucosa" EXACT [OBOL:automatic] +xref: FMA:263238 +is_a: UBERON:0005039 ! mucosa of bronchiole +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0002188 ! respiratory bronchiole +relationship: part_of UBERON:0002188 ! respiratory bronchiole + +[Term] +id: UBERON:0005042 +name: inner epithelial layer of tympanic membrane +def: "A portion of the tympanic cavity epithelium which makes up the outer (cuticular) layer of the tympanic membrane" [http://www.ncbi.nlm.nih.gov/pubmed/11237469, https://orcid.org/0000-0002-6601-2165] +synonym: "mucosa of tympanic membrane" EXACT [FMA:56844] +synonym: "mucous layer of tympanic membrane" EXACT [FMA:56844] +synonym: "mucous stratum of tympanic membrane" EXACT [FMA:56844] +synonym: "tympanic membrane external middle ear cavity epithelial component" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "tympanic membrane mucosa" EXACT [FMA:56844] +xref: FMA:56844 +xref: http://www.snomedbrowser.com/Codes/Details/36411006 +is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0009647 ! tympanic membrane epithelium +intersection_of: UBERON:0009647 ! tympanic membrane epithelium +intersection_of: part_of UBERON:0010063 ! tympanic cavity epithelium +relationship: part_of UBERON:0010063 ! tympanic cavity epithelium + +[Term] +id: UBERON:0005043 +name: mucosa of nasolacrimal duct +def: "A mucosa that is part of a nasolacrimal duct [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of organ of nasolacrimal duct" EXACT [OBOL:automatic] +synonym: "mucous membrane of nasolacrimal duct" EXACT [OBOL:automatic] +synonym: "nasolacrimal duct mucosa" EXACT [OBOL:automatic] +synonym: "nasolacrimal duct mucosa of organ" EXACT [OBOL:automatic] +synonym: "nasolacrimal duct mucous membrane" EXACT [OBOL:automatic] +synonym: "nasolacrimal duct organ mucosa" EXACT [OBOL:automatic] +synonym: "nasolacrimal ductal mucosa" EXACT [FMA:59664] +synonym: "organ mucosa of nasolacrimal duct" EXACT [OBOL:automatic] +xref: FMA:59664 +is_a: UBERON:0000344 ! mucosa +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0002392 ! nasolacrimal duct +relationship: part_of UBERON:0002392 ! nasolacrimal duct + +[Term] +id: UBERON:0005044 +name: mucosa of pharyngotympanic tube +def: "A mucosa that is part of a pharyngotympanic tube [Automatically generated definition]." [OBOL:automatic] +synonym: "auditory tube mucosa" EXACT [OBOL:automatic] +synonym: "auditory tube mucosa of organ" EXACT [OBOL:automatic] +synonym: "auditory tube mucous membrane" EXACT [OBOL:automatic] +synonym: "auditory tube organ mucosa" EXACT [OBOL:automatic] +synonym: "internal auditory tube mucosa" EXACT [OBOL:automatic] +synonym: "internal auditory tube mucosa of organ" EXACT [OBOL:automatic] +synonym: "internal auditory tube mucous membrane" EXACT [OBOL:automatic] +synonym: "internal auditory tube organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of auditory tube" EXACT [OBOL:automatic] +synonym: "mucosa of internal auditory tube" EXACT [OBOL:automatic] +synonym: "mucosa of organ of auditory tube" EXACT [OBOL:automatic] +synonym: "mucosa of organ of internal auditory tube" EXACT [OBOL:automatic] +synonym: "mucosa of organ of pharyngotympanic tube" EXACT [OBOL:automatic] +synonym: "mucous membrane of auditory tube" EXACT [OBOL:automatic] +synonym: "mucous membrane of internal auditory tube" EXACT [OBOL:automatic] +synonym: "mucous membrane of pharyngotympanic tube" EXACT [OBOL:automatic] +synonym: "mucuous membrane of eustachian tube" EXACT [FMA:60109] +synonym: "mucuous membrane of pharyngotympanic tube" EXACT [FMA:60109] +synonym: "organ mucosa of auditory tube" EXACT [OBOL:automatic] +synonym: "organ mucosa of internal auditory tube" EXACT [OBOL:automatic] +synonym: "organ mucosa of pharyngotympanic tube" EXACT [OBOL:automatic] +synonym: "pharyngotympanic tube mucosa" EXACT [OBOL:automatic] +synonym: "pharyngotympanic tube mucosa of organ" EXACT [OBOL:automatic] +synonym: "pharyngotympanic tube mucous membrane" EXACT [OBOL:automatic] +synonym: "pharyngotympanic tube organ mucosa" EXACT [OBOL:automatic] +synonym: "tunica mucosa (tuba auditiva)" EXACT [FMA:60109] +synonym: "tunica mucosa (tuba auditoria)" EXACT [FMA:60109] +xref: FMA:60109 +is_a: UBERON:0005026 ! mucosa of middle ear +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0002393 ! pharyngotympanic tube +relationship: part_of UBERON:0002393 ! pharyngotympanic tube + +[Term] +id: UBERON:0005045 +name: mucosa of ethmoidal sinus +def: "A mucosa that is part of a ethmoid sinus [Automatically generated definition]." [OBOL:automatic] +synonym: "ethmoid sinus mucosa" EXACT [OBOL:automatic] +synonym: "ethmoid sinus mucosa of organ" EXACT [OBOL:automatic] +synonym: "ethmoid sinus mucous membrane" EXACT [OBOL:automatic] +synonym: "ethmoid sinus organ mucosa" EXACT [OBOL:automatic] +synonym: "ethmoidal sinus mucosa" EXACT [FMA:59776] +synonym: "mucosa of ethmoid sinus" EXACT [OBOL:automatic] +synonym: "mucosa of organ of ethmoid sinus" EXACT [OBOL:automatic] +synonym: "mucous membrane of ethmoid sinus" EXACT [OBOL:automatic] +synonym: "organ mucosa of ethmoid sinus" EXACT [OBOL:automatic] +xref: FMA:59776 +xref: http://www.snomedbrowser.com/Codes/Details/65501003 +is_a: UBERON:0000344 ! mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: located_in UBERON:0002453 ! ethmoid sinus +relationship: located_in UBERON:0002453 ! ethmoid sinus + +[Term] +id: UBERON:0005046 +name: mucosa of hard palate +def: "A mucosa that is part of a hard palate [Automatically generated definition]." [OBOL:automatic] +synonym: "hard palate mucosa" EXACT [OBOL:accepted] +synonym: "hard palate mucous membrane" EXACT [OBOL:automatic] +synonym: "mucous membrane of hard palate" EXACT [OBOL:automatic] +synonym: "organ mucosa of hard palate" EXACT [OBOL:automatic] +xref: FMA:59783 +xref: http://www.snomedbrowser.com/Codes/Details/245841005 +is_a: UBERON:0005019 ! mucosa of palate +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0003216 ! hard palate +relationship: part_of UBERON:0003216 ! hard palate + +[Term] +id: UBERON:0005047 +name: mucosa of vocal fold +def: "A mucosa that is part of a vocal cord [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of glottis" EXACT [FMA:64017] +synonym: "mucosa of organ of true vocal cord" EXACT [OBOL:automatic] +synonym: "mucosa of organ of vocal cord" EXACT [OBOL:automatic] +synonym: "mucosa of true vocal cord" EXACT [OBOL:automatic] +synonym: "mucosa of vocal cord" EXACT [OBOL:automatic] +synonym: "mucous membrane of true vocal cord" EXACT [OBOL:automatic] +synonym: "mucous membrane of vocal cord" EXACT [OBOL:automatic] +synonym: "organ mucosa of true vocal cord" EXACT [OBOL:automatic] +synonym: "organ mucosa of vocal cord" EXACT [OBOL:automatic] +synonym: "true vocal cord mucosa" EXACT [OBOL:automatic] +synonym: "true vocal cord mucosa of organ" EXACT [OBOL:automatic] +synonym: "true vocal cord mucous membrane" EXACT [OBOL:automatic] +synonym: "true vocal cord organ mucosa" EXACT [OBOL:automatic] +synonym: "vocal cord mucosa" EXACT [OBOL:automatic] +synonym: "vocal cord mucosa of organ" EXACT [OBOL:automatic] +synonym: "vocal cord mucous membrane" EXACT [OBOL:automatic] +synonym: "vocal cord organ mucosa" EXACT [OBOL:automatic] +synonym: "vocal fold mucosa" EXACT [FMA:64017] +xref: FMA:64017 +is_a: UBERON:0001824 ! mucosa of larynx +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0003706 ! laryngeal vocal fold +relationship: part_of UBERON:0003706 ! laryngeal vocal fold + +[Term] +id: UBERON:0005048 +name: mucosa of uterine tube +def: "A mucosa that is part of a fallopian tube [Automatically generated definition]." [OBOL:automatic] +synonym: "fallopian tube mucosa" EXACT [OBOL:automatic] +synonym: "fallopian tube mucosa of organ" EXACT [OBOL:automatic] +synonym: "fallopian tube mucous membrane" EXACT [OBOL:automatic] +synonym: "fallopian tube organ mucosa" EXACT [OBOL:automatic] +synonym: "mucosa of fallopian tube" EXACT [OBOL:automatic] +synonym: "mucosa of organ of fallopian tube" EXACT [OBOL:automatic] +synonym: "mucosa of organ of uterine tube" EXACT [OBOL:automatic] +synonym: "mucosa of oviduct" EXACT [FMA:18319] +synonym: "mucous membrane of fallopian tube" EXACT [OBOL:automatic] +synonym: "mucous membrane of uterine tube" EXACT [OBOL:automatic] +synonym: "organ mucosa of fallopian tube" EXACT [OBOL:automatic] +synonym: "organ mucosa of uterine tube" EXACT [OBOL:automatic] +synonym: "tunica mucosa tubae uterinae" EXACT LATIN [FMA:18319, FMA:TA] +synonym: "uterine tubal mucosa" EXACT [FMA:18319] +synonym: "uterine tube mucosa" EXACT [OBOL:automatic] +synonym: "uterine tube mucosa of organ" EXACT [OBOL:automatic] +synonym: "uterine tube mucous membrane" EXACT [OBOL:automatic] +synonym: "uterine tube organ mucosa" EXACT [OBOL:automatic] +xref: FMA:18319 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0019042 ! reproductive system mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0003889 ! fallopian tube +relationship: part_of UBERON:0003889 ! fallopian tube + +[Term] +id: UBERON:0005049 +name: mucosa of infundibulum of uterine tube +def: "A mucosa that is part of a uterine tube infundibulum [Automatically generated definition]." [OBOL:automatic] +synonym: "mucosa of infundibulum of fallopian tube" EXACT [FMA:18357] +synonym: "mucosa of infundibulum of oviduct" EXACT [FMA:18357] +synonym: "mucosa of organ of uterine tube infundibulum" EXACT [OBOL:automatic] +synonym: "mucosa of uterine tube infundibulum" EXACT [OBOL:automatic] +synonym: "mucous membrane of uterine tube infundibulum" EXACT [OBOL:automatic] +synonym: "organ mucosa of uterine tube infundibulum" EXACT [OBOL:automatic] +synonym: "uterine tube infundibulum mucosa" EXACT [OBOL:automatic] +synonym: "uterine tube infundibulum mucosa of organ" EXACT [OBOL:automatic] +synonym: "uterine tube infundibulum mucous membrane" EXACT [OBOL:automatic] +synonym: "uterine tube infundibulum organ mucosa" EXACT [OBOL:automatic] +xref: FMA:18357 +is_a: UBERON:0019042 ! reproductive system mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0003984 ! uterine tube infundibulum +relationship: part_of UBERON:0003984 ! uterine tube infundibulum + +[Term] +id: UBERON:0005050 +name: liver papillary process +synonym: "papillary process of caudate lobe of liver" NARROW [FMA:14506] +synonym: "processus papillaris" EXACT [FMA:14506] +synonym: "processus papillaris lobi caudati hepatis" EXACT LATIN [FMA:14506, FMA:TA] +xref: EMAPA:37646 {source="MA:th"} +xref: FMA:14506 +xref: http://www.snomedbrowser.com/Codes/Details/271187002 +xref: MA:0001643 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0034944 ! zone of organ +relationship: part_of UBERON:0002107 ! liver + +[Term] +id: UBERON:0005051 +name: mediastinum testis +def: "The mediastinum testis is a network of fibrous connective tissue that extends from the upper to near the lower extremity of the testis, and is wider above than below. From its front and sides numerous imperfect septa (trabeculæ) are given off, which radiate toward the surface of the organ, and are attached to the tunica albuginea. They divide the interior of the organ into a number of incomplete spaces, called lobules. These are somewhat cone-shaped, being broad at their bases at the surface of the gland, and becoming narrower as they converge to the mediastinum. The mediastinum supports the rete testis and blood vessels of the testis in their passage to and from the substance of the gland[WP]" [http://en.wikipedia.org/wiki/Mediastinum_testis] +synonym: "body of highmore" EXACT [FMA:19812] +synonym: "hilum of testicle" EXACT [] +synonym: "mediastinum of testis" EXACT [FMA:19812] +synonym: "testis mediastinum" EXACT [FMA:19812] +xref: EMAPA:18331 +xref: FMA:19812 +xref: http://www.snomedbrowser.com/Codes/Details/362279007 +xref: MA:0003240 +xref: Mediastinum:testis +is_a: UBERON:0002050 ! embryonic structure +relationship: has_part UBERON:0002384 ! connective tissue +relationship: part_of UBERON:0000473 ! testis + +[Term] +id: UBERON:0005052 +name: gizzard +def: "The muscular enlargement of the alimentary canal that has usually thick muscular walls and a tough horny lining for grinding the food and when the crop is present follows it and the proventriculus." [BTO:0000520, http://en.wikipedia.org/wiki/Gizzard] +subset: organ_slim +synonym: "gastric mill" EXACT [http://en.wikipedia.org/wiki/Gizzard] +synonym: "gigerium" EXACT [http://en.wikipedia.org/wiki/Gizzard] +synonym: "ventriculus" RELATED [http://en.wikipedia.org/wiki/Gizzard] +xref: BTO:0000520 +xref: GAID:1238 +xref: http://en.wikipedia.org/wiki/Gizzard +xref: http://linkedlifedata.com/resource/umls/id/C1510668 +xref: MESH:D005895 +xref: NCIT:C77615 +xref: UMLS:C1510668 {source="ncithesaurus:Gizzard"} +is_a: UBERON:0000945 {source="cjm"} ! stomach +relationship: has_part UBERON:0008861 {source="Wikipedia"} ! pyloric gastric gland + +[Term] +id: UBERON:0005053 +name: primary nerve cord +def: "A cluster of neurons that is the most prominent longitudinally extending condensed part of a nervous system." [http://www.ncbi.nlm.nih.gov/pubmed/21062451] +synonym: "nerve cord" EXACT [BILA:0000136] +synonym: "true nerve cord" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: BILA:0000136 +xref: BTO:0001656 +is_a: UBERON:0011215 {source="cjm"} ! central nervous system cell part cluster +relationship: develops_from UBERON:0000924 ! ectoderm + +[Term] +id: UBERON:0005054 +name: primary dorsal nerve cord +def: "A nerve cord in the dorsal mid-line that is the most prominent nerve cord." [http://en.wikipedia.org/wiki/Dorsal_nerve_cord, http://orcid.org/0000-0002-6601-2165] +synonym: "dorsal nerve cord" EXACT [BTO:0002329, http://en.wikipedia.org/wiki/Dorsal_nerve_cord, http://tolweb.org/Chordata/2499] +synonym: "true dorsal nerve cord" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: BTO:0002329 +xref: http://en.wikipedia.org/wiki/Dorsal_nerve_cord +is_a: UBERON:0005053 ! primary nerve cord +intersection_of: UBERON:0005053 ! primary nerve cord +intersection_of: intersects_midsagittal_plane_of UBERON:0001137 ! dorsum +disjoint_from: UBERON:0035607 ! accessory nerve cord of dorsal region +relationship: intersects_midsagittal_plane_of UBERON:0001137 ! dorsum +relationship: part_of UBERON:0001137 ! dorsum + +[Term] +id: UBERON:0005055 +name: zone of long bone +def: "An organ part that is part of a long bone [Automatically generated definition]." [OBOL:automatic] +subset: uberon_slim +synonym: "long bone zone" EXACT [] +xref: FMA:24008 +is_a: UBERON:0005913 ! zone of bone organ +intersection_of: UBERON:0005913 ! zone of bone organ +intersection_of: part_of UBERON:0002495 ! long bone +relationship: part_of UBERON:0002495 ! long bone + +[Term] +id: UBERON:0005056 +name: external female genitalia +def: "An external genitalia that is part of a female reproductive system [Automatically generated definition]." [OBOL:automatic] +comment: TODO: Relabel. Make distinct organ class. See https://github.com/obophenotype/uberon/issues/547 +subset: organ_slim +subset: pheno_slim +synonym: "external female genital organ" EXACT [BTO:0003100] +synonym: "external genitalia of female reproductive system" EXACT [OBOL:automatic] +synonym: "female external genitalia" EXACT [FMA:45649] +synonym: "organa genitalia feminina externa" RELATED [BTO:0003100] +xref: BTO:0003100 +xref: EMAPA:30984 +xref: FMA:45649 +xref: galen:FemaleExternalGenitalia +xref: http://www.snomedbrowser.com/Codes/Details/362234008 +is_a: UBERON:0003134 ! female reproductive organ +is_a: UBERON:0004176 ! external genitalia +intersection_of: UBERON:0004176 ! external genitalia +intersection_of: part_of UBERON:0000474 ! female reproductive system +disjoint_from: UBERON:0009196 ! indifferent external genitalia + +[Term] +id: UBERON:0005057 +name: immune organ +def: "An organ that is part of a immune system [Automatically generated definition]." [OBOL:automatic] +subset: organ_slim +subset: pheno_slim +synonym: "immune system organ" EXACT [] +is_a: UBERON:0000062 ! organ +intersection_of: UBERON:0000062 ! organ +intersection_of: part_of UBERON:0002405 ! immune system +relationship: part_of UBERON:0002405 ! immune system + +[Term] +id: UBERON:0005058 +name: hemolymphoid system gland +def: "A gland that is part of a hemolymphoid system [Automatically generated definition]." [OBOL:automatic] +subset: organ_slim +synonym: "haemolymphoid system gland" RELATED [EMAPA:18766] +synonym: "hemopoietic or lymphoid gland" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "hemopoietic or lymphoid organ" BROAD [GO:0048534] +xref: EMAPA:18766 +xref: MA:0002962 +is_a: UBERON:0002530 ! gland +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0002193 ! hemolymphoid system +relationship: part_of UBERON:0002193 ! hemolymphoid system + +[Term] +id: UBERON:0005059 +name: obsolete Drosophila lymph gland +is_obsolete: true +consider: FBbt:00001668 + +[Term] +id: UBERON:0005061 +name: neural groove +def: "The median dorsal longitudinal groove formed in the embryo by the neural plate after the appearance of the neural folds." [GO:0001842, http://en.wikipedia.org/wiki/Neural_groove, http://orcid.org/0000-0002-6601-2165] +xref: AAO:0011071 +xref: EMAPA:35594 +xref: FMA:295624 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1363 +xref: http://linkedlifedata.com/resource/umls/id/C0814992 +xref: http://www.snomedbrowser.com/Codes/Details/361463007 +xref: NCIT:C34224 +xref: Neural:groove +xref: UMLS:C0814992 {source="ncithesaurus:Neural_Groove"} +xref: XAO:0000248 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0003075 ! neural plate + +[Term] +id: UBERON:0005062 +name: neural fold +def: "One of the two elevated edges of the neural groove[GO,MP]." [GO:0001842, http://en.wikipedia.org/wiki/Neural_fold, MP:0011256] +subset: pheno_slim +synonym: "medullary fold" EXACT [MP:0011256] +xref: EHDAA2:0001249 +xref: FMA:295618 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1364 +xref: http://linkedlifedata.com/resource/umls/id/C0814993 +xref: http://www.snomedbrowser.com/Codes/Details/361461009 +xref: NCIT:C34223 +xref: Neural:fold +xref: UMLS:C0814993 {source="ncithesaurus:Neural_Fold"} +xref: XAO:0004087 +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:0005157 ! epithelial fold +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium +is_a: UBERON:0015212 ! lateral structure +disjoint_from: UBERON:0009746 ! head fold of embryonic disc +relationship: in_lateral_side_of UBERON:0005061 ! neural groove +relationship: part_of UBERON:0005061 ! neural groove + +[Term] +id: UBERON:0005063 +name: left ventricular compact myocardium +def: "." [GO:0003224] +is_a: UBERON:0004127 ! compact layer of ventricle +intersection_of: UBERON:0004127 ! compact layer of ventricle +intersection_of: part_of UBERON:0002084 ! heart left ventricle +relationship: part_of UBERON:0003382 {source="GO"} ! cardiac muscle of left ventricle +relationship: part_of UBERON:0006566 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! left ventricle myocardium + +[Term] +id: UBERON:0005064 +name: left ventricular trabecular myocardium +def: "." [GO:0003225] +is_a: UBERON:0004126 ! trabecular layer of ventricle +intersection_of: UBERON:0004126 ! trabecular layer of ventricle +intersection_of: part_of UBERON:0002084 ! heart left ventricle +relationship: part_of UBERON:0003382 {source="GO"} ! cardiac muscle of left ventricle + +[Term] +id: UBERON:0005065 +name: right ventricular compact myocardium +def: "." [GO:0003226] +is_a: UBERON:0004127 ! compact layer of ventricle +intersection_of: UBERON:0004127 ! compact layer of ventricle +intersection_of: part_of UBERON:0002080 ! heart right ventricle +relationship: part_of UBERON:0003381 {source="GO"} ! cardiac muscle of right ventricle +relationship: part_of UBERON:0006567 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! right ventricle myocardium + +[Term] +id: UBERON:0005066 +name: right ventricular trabecular myocardium +def: "." [GO:0003227] +is_a: UBERON:0004126 ! trabecular layer of ventricle +intersection_of: UBERON:0004126 ! trabecular layer of ventricle +intersection_of: part_of UBERON:0002080 ! heart right ventricle +relationship: part_of UBERON:0003381 {source="GO"} ! cardiac muscle of right ventricle + +[Term] +id: UBERON:0005067 +name: amphid sensory organ +def: "Amphid sensory organs are the sensory organs of nematodes[GO]." [GO:0003386] +subset: organ_slim +synonym: "amphid sensillum" EXACT [] +xref: WBbt:0005391 +is_a: UBERON:0000020 ! sense organ + +[Term] +id: UBERON:0005068 +name: neural rod +def: "A solid rod of neurectoderm derived from the neural keel. The neural rod is roughly circular in cross section. Neural rod formation occurs during primary neurulation in teleosts[GO]. An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube[ZFIN]." [GO:0014024, ZFA:0000133] +subset: efo_slim +synonym: "neural tube rod" RELATED [GO:0014027] +xref: EFO:0003498 +xref: TAO:0000133 +xref: ZFA:0000133 +is_a: UBERON:0016879 ! future central nervous system +relationship: develops_from UBERON:0007135 ! neural keel + +[Term] +id: UBERON:0005069 +name: neural fold hinge point +def: "The median hinge point extends for the entire length of the neural tube, and the lateral hinge points do not form in the spinal cord region of the neural tube[GO]." [GO:0021504] +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0001049 ! neural tube + +[Term] +id: UBERON:0005070 +name: anterior neuropore +def: "The neuropore at the anterior (rostral) end of the neural tube." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "cephalic neuropore" EXACT [] +synonym: "cranial neuropore" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "rostral neuropore" EXACT [EMAPA:16523] +xref: EHDAA2:0004203 +xref: EMAPA:16523 +xref: http://www.snomedbrowser.com/Codes/Details/361478000 +xref: RETIRED_EHDAA2:0001768 +xref: VHOG:0000768 +is_a: UBERON:0005077 ! neuropore +intersection_of: UBERON:0005077 ! neuropore +intersection_of: in_anterior_side_of UBERON:0001049 ! neural tube +disjoint_from: UBERON:0005071 {source="lexical"} ! posterior neuropore +relationship: in_anterior_side_of UBERON:0001049 ! neural tube + +[Term] +id: UBERON:0005071 +name: posterior neuropore +def: "The neuropore at the posterior (caudal) end of the neural tube." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "caudal neuropore" EXACT [EMAPA:16526] +xref: EHDAA2:0000676 +xref: EHDAA:900 +xref: EMAPA:16526 +xref: http://www.snomedbrowser.com/Codes/Details/361479008 +xref: RETIRED_EHDAA2:0000223 +xref: VHOG:0000769 +is_a: UBERON:0005077 ! neuropore +intersection_of: UBERON:0005077 ! neuropore +intersection_of: in_posterior_side_of UBERON:0001049 ! neural tube +relationship: in_posterior_side_of UBERON:0001049 ! neural tube + +[Term] +id: UBERON:0005073 +name: obsolete preganglionic parasympathetic nervous system +is_obsolete: true +replaced_by: UBERON:0011930 + +[Term] +id: UBERON:0005074 +name: obsolete postganglionic parasympathetic nervous system +is_obsolete: true +replaced_by: UBERON:0011929 + +[Term] +id: UBERON:0005075 +name: forebrain-midbrain boundary +def: "An anatomical boundary that adjacent_to a forebrain and adjacent_to a midbrain." [OBOL:automatic] +synonym: "diencephalic-mesencephalic boundary" EXACT [ZFA:0001367] +synonym: "forebrain midbrain boundary" EXACT [ZFA:0001367] +synonym: "forebrain-midbrain boundary region" EXACT [EMAPA:36449] +xref: EMAPA:36449 +xref: TAO:0001367 +xref: ZFA:0001367 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0007651 ! anatomical junction +intersection_of: UBERON:0007651 ! anatomical junction +intersection_of: adjacent_to UBERON:0001890 ! forebrain +intersection_of: adjacent_to UBERON:0001891 ! midbrain +relationship: adjacent_to UBERON:0001890 ! forebrain +relationship: adjacent_to UBERON:0001891 ! midbrain +relationship: develops_from UBERON:0007288 {evidence="definitional"} ! presumptive forebrain midbrain boundary +relationship: part_of UBERON:0000955 ! brain + +[Term] +id: UBERON:0005076 +name: hindbrain-spinal cord boundary +def: "An anatomical boundary that adjacent_to a hindbrain and adjacent_to a spinal cord." [OBOL:automatic] +synonym: "hindbrain-spinal cord boundary region" EXACT [] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0007651 ! anatomical junction +intersection_of: UBERON:0007651 ! anatomical junction +intersection_of: adjacent_to UBERON:0002028 ! hindbrain +intersection_of: adjacent_to UBERON:0002240 ! spinal cord +relationship: adjacent_to UBERON:0002028 ! hindbrain +relationship: adjacent_to UBERON:0002240 ! spinal cord +relationship: part_of UBERON:0001017 ! central nervous system + +[Term] +id: UBERON:0005077 +name: neuropore +def: "A temporary opening leading from the central canal of the embryonic neural tube to the exterior." [MGI:anna] +subset: pheno_slim +xref: http://www.snomedbrowser.com/Codes/Details/360408007 +is_a: UBERON:0000161 ! orifice +is_a: UBERON:0004121 ! ectoderm-derived structure +union_of: UBERON:0005070 ! anterior neuropore +union_of: UBERON:0005071 ! posterior neuropore +relationship: connects UBERON:0003842 ! neural tube lumen +relationship: part_of UBERON:0001049 ! neural tube + +[Term] +id: UBERON:0005078 +name: lamina terminalis of neural tube +def: "The anterior-most (rostral) portion of the wall of the neural tube, formed by closure of the anterior neuropore; the median strip of the anterior wall of the prosencephalon, which persists in a relatively unchanged state as the cerebral hemispheres grow out forward beyond the original anterior end of the prosencephalon." [MGI:anna] +synonym: "lamina terminalis" BROAD [] +xref: BAMS:LTer +xref: BM:LT +xref: EHDAA2:0000903 +xref: EHDAA:1983 +xref: EHDAA:2661 +xref: EMAPA:16904 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=208 +xref: Lamina:terminalis +xref: VHOG:0001547 +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium +disjoint_from: UBERON:0014898 ! lamina terminalis of ischium +relationship: develops_from UBERON:0005070 ! anterior neuropore +relationship: part_of UBERON:0006222 ! future diencephalon + +[Term] +id: UBERON:0005079 +name: eggshell +def: "A product of the somatic follicle cell epithelium and a structure that supports the egg in a hostile environment, minimizing water loss whilst allowing gas exchanges essential for embryonic respiration[GO]." [GO:0030703, http://en.wikipedia.org/wiki/Eggshell] +synonym: "egg shell" EXACT [BTO:0001716] +xref: BTO:0001716 +xref: http://en.wikipedia.org/wiki/Eggshell +xref: MESH:D004528 +xref: WBbt:0005843 +is_a: UBERON:0000476 ! acellular anatomical structure +relationship: bounding_layer_of UBERON:0007379 ! shelled egg +relationship: part_of UBERON:0007379 ! shelled egg + +[Term] +id: UBERON:0005080 +name: metanephric ureteric bud +def: "The portion of the ureteric bud tube that contributes to the morphogenesis of the metanephros[GO]." [GO:0035502] +is_a: UBERON:0000084 ! ureteric bud +intersection_of: UBERON:0000084 ! ureteric bud +intersection_of: has_potential_to_develop_into UBERON:0000081 ! metanephros +relationship: has_potential_to_develop_into UBERON:0000081 ! metanephros + +[Term] +id: UBERON:0005081 +name: ureter ureteric bud +def: "The portion of the ureteric bud that contributes to the morphogenesis of the ureter. The ureter ureteric bud is the initial structure that forms the ureter[GO]." [GO:0035503] +is_a: UBERON:0000084 ! ureteric bud +intersection_of: UBERON:0000084 ! ureteric bud +intersection_of: has_potential_to_develop_into UBERON:0000056 ! ureter +relationship: has_potential_to_develop_into UBERON:0000056 ! ureter + +[Term] +id: UBERON:0005082 +name: tube lumen +def: "A hole in a tube[GO]." [GO:0060609] +xref: AEO:0000078 +xref: EHDAA2:0004618 +xref: RETIRED_EHDAA2:0003078 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: surrounded_by UBERON:0000025 ! tube +relationship: surrounded_by UBERON:0000025 ! tube + +[Term] +id: UBERON:0005083 +name: nipple sheath +def: "A circular ingrowth of the epidermis around the region of the mammary sprout[GO]." [GO:0060659, MGI:anna] +is_a: UBERON:0001003 ! skin epidermis +relationship: part_of UBERON:0002030 ! nipple + +[Term] +id: UBERON:0005085 +name: ectodermal placode +def: "An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm[GO]" [GO:0060788] +synonym: "epithelial placode" RELATED [AEO:0000112] +xref: AEO:0000218 +is_a: UBERON:0001048 ! primordium +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0000924 ! ectoderm + +[Term] +id: UBERON:0005086 +name: hair follicle placode +def: "A bud-like thickening in the epidermis consisting of elongated keratinocytes, which at the distal end are in touch with numerous aggregated specialized dermal fibroblasts, the dermal condensate." [https://doi.org/10.1016/j.cub.2008.12.005] +synonym: "hair gem" RELATED [ISBN:9780878932504] +synonym: "hair germ" RELATED [https://doi.org/10.1016/j.cub.2008.12.005] +synonym: "hair peg" RELATED [ISBN:9780878932504] +synonym: "hair placode" EXACT [https://doi.org/10.1016/j.cub.2008.12.005] +synonym: "vibrissa placode" NARROW [] +xref: EMAPA:36479 +is_a: UBERON:0011817 ! skin appendage placode +intersection_of: UBERON:0005085 ! ectodermal placode +intersection_of: has_potential_to_develop_into UBERON:0002073 ! hair follicle +relationship: develops_from UBERON:0001003 ! skin epidermis +relationship: develops_from UBERON:0011272 {source="Wikipathways:WP2062"} ! embryonic skin basal layer +relationship: has_potential_to_develop_into UBERON:0002073 ! hair follicle + +[Term] +id: UBERON:0005087 +name: tooth placode +def: "An tooth placode is a thickening of the ectoderm that will give rise to the tooth bud[GO]." [GO:0060790] +synonym: "dental anlage" EXACT [] +synonym: "dental placode" EXACT [OBOL:automatic] +synonym: "dental primordium" EXACT [ZFA:0001153] +synonym: "odontogenic placode" EXACT [OBOL:automatic] +synonym: "tooth anlage" EXACT [MP:0000117] +synonym: "tooth germ" RELATED [ZFA:0001153] +synonym: "tooth primordium" EXACT [MP:0000117] +xref: BTO:0001511 +xref: TAO:0001153 +xref: ZFA:0001153 +is_a: UBERON:0006598 ! presumptive structure +is_a: UBERON:0011814 {source="NCBIBook:NBK53175"} ! non-neurogenic ectodermal placode +intersection_of: UBERON:0005085 ! ectodermal placode +intersection_of: has_potential_to_develop_into UBERON:0001091 ! calcareous tooth +relationship: has_developmental_contribution_from UBERON:0004362 {notes="check for other species", source="Tooth:development"} ! pharyngeal arch 1 +relationship: has_potential_to_develop_into UBERON:0001091 ! calcareous tooth + +[Term] +id: UBERON:0005088 +name: sebaceous gland placode +def: "A sebaceous gland placode is a thickening of the ectoderm that will give rise to the sebaceous gland bud[GO]." [GO:0060791] +is_a: UBERON:0006598 ! presumptive structure +is_a: UBERON:0011814 {source="NCBIBook:NBK53175"} ! non-neurogenic ectodermal placode +intersection_of: UBERON:0005085 ! ectodermal placode +intersection_of: has_potential_to_develop_into UBERON:0001821 ! sebaceous gland +relationship: develops_from UBERON:0011272 {source="Wikipathways:WP2062"} ! embryonic skin basal layer +relationship: has_potential_to_develop_into UBERON:0001821 ! sebaceous gland + +[Term] +id: UBERON:0005089 +name: sweat gland placode +def: "An sweat gland placode is a thickening of the ectoderm that will give rise to the sweat gland bud[GO]." [GO:0060793] +is_a: UBERON:0006598 ! presumptive structure +is_a: UBERON:0011814 {source="NCBIBook:NBK53175"} ! non-neurogenic ectodermal placode +intersection_of: UBERON:0005085 ! ectodermal placode +intersection_of: has_potential_to_develop_into UBERON:0001820 ! sweat gland +relationship: develops_from UBERON:0011272 {source="Wikipathways:WP2062"} ! embryonic skin basal layer +relationship: has_potential_to_develop_into UBERON:0001820 ! sweat gland + +[Term] +id: UBERON:0005090 +name: muscle structure +def: "Muscle structures are contractile cells, tissues or organs that are found in multicellular organisms[GO]." [GO:0061061] +synonym: "muscle" RELATED [] +synonym: "muscle element" RELATED [] +synonym: "musculus" EXACT [FMA:30316] +xref: EMAPA:32715 +xref: FBbt:00005073 +xref: FMA:30316 +is_a: UBERON:0000061 ! anatomical structure + +[Term] +id: UBERON:0005091 +name: left horn of sinus venosus +synonym: "sinus venosus left horn" EXACT [VHOG:0000488] +xref: EHDAA2:0001840 +xref: EHDAA:482 +xref: EMAPA:16238 +xref: FMA:70321 +xref: VHOG:0000488 +is_a: UBERON:0002050 {source="FMA"} ! embryonic structure +relationship: in_left_side_of UBERON:0002063 ! sinus venosus +relationship: part_of UBERON:0002063 ! sinus venosus + +[Term] +id: UBERON:0005092 +name: right horn of sinus venosus +synonym: "sinus venosus right horn" EXACT [VHOG:0000489] +xref: EHDAA2:0001841 +xref: EHDAA:484 +xref: EMAPA:16239 +xref: FMA:70318 +xref: VHOG:0000489 +is_a: UBERON:0002050 {source="FMA"} ! embryonic structure +relationship: in_right_side_of UBERON:0002063 ! sinus venosus +relationship: part_of UBERON:0002063 ! sinus venosus + +[Term] +id: UBERON:0005093 +name: embryonic cement gland +def: "A simple mucus-secreting structure that is positioned at the front of the embryo, attaches the newly hatched embryo to a support before the hatchling can swim well or feed, and marks the anterior-most dorsal ectoderm[XAO]." [GO:0071570, XAO:0000033] +synonym: "cement gland" BROAD [XAO:0000033] +xref: AAO:0010373 +xref: XAO:0000033 +is_a: UBERON:0002530 ! gland +relationship: part_of UBERON:0000922 ! embryo + +[Term] +id: UBERON:0005094 +name: beak +def: "The avian beak is an external anatomical structure, in the head region, that is adapted for feeding self and young, catching prey, probing, etc. It encompasses, but is not restricted to, the maxilla, mandible, maxillary ramaphotheca, mandibular ramaphotheca, nostril, nasal fossa, nasal bones, egg tooth and rictus[GO]. The beak, bill or rostrum is an external anatomical structure of birds which is used for eating and for grooming, manipulating objects, killing prey, probing for food, courtship and feeding young. ." [GO:0071728, http://en.wikipedia.org/wiki/Beak] +synonym: "avian beak" EXACT [] +synonym: "bill" RELATED [] +synonym: "rostrum" RELATED [] +xref: http://en.wikipedia.org/wiki/Beak +xref: MESH:D001502 +is_a: UBERON:0003102 ! surface structure +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0005095 +name: kidney rudiment +def: "." [GO:0072003] +synonym: "kidney anlage" RELATED [GOC:mtg_kidney_jan10] +is_a: UBERON:0002050 ! embryonic structure +relationship: develops_from UBERON:0007687 {source="GO"} ! kidney field + +[Term] +id: UBERON:0005096 +name: descending thin limb +alt_id: UBERON:0005165 +def: "The descending thin limb is a part of the loop of Henle situated just after the proximal straight tubule (S3). It extends to the tip of the loop of Henle[GO]." [GO:0072022, http://en.wikipedia.org/wiki/Descending_limb_of_loop_of_Henle] +subset: uberon_slim +synonym: "descending limb of Henle's loop" RELATED [http://en.wikipedia.org/wiki/Descending_limb_of_loop_of_Henle] +synonym: "descending limb of loop of Henle" RELATED [http://en.wikipedia.org/wiki/Descending_limb_of_loop_of_Henle] +synonym: "descending thin limb of loop of Henle" EXACT [] +synonym: "loop of Henle descending thin limb" EXACT [] +synonym: "loop of Henle thin descending limb" EXACT [MA:0002625] +synonym: "pars descendens (tubulus attenuatus)" EXACT [FMA:17719] +synonym: "thin descending limb" EXACT [] +synonym: "thin descending limb of loop of Henle" RELATED [http://en.wikipedia.org/wiki/Descending_limb_of_loop_of_Henle] +synonym: "thin descending limb of the loop of Henle" RELATED [http://en.wikipedia.org/wiki/Descending_limb_of_loop_of_Henle] +synonym: "thin descending loop of Henle" RELATED [http://en.wikipedia.org/wiki/Descending_limb_of_loop_of_Henle] +xref: EMAPA:35514 +xref: FMA:17719 +xref: http://en.wikipedia.org/wiki/Descending_limb_of_loop_of_Henle +xref: MA:0002625 +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0004136 ! intermediate tubule + +[Term] +id: UBERON:0005097 +name: renal connecting tubule +def: "The connecting tubule is a tubular segment of the nephron; it connects the distal convoluted tubule to the collecting duct[GO]." [GO:0072027, http://en.wikipedia.org/wiki/Connecting_tubule] +synonym: "connecting tubule" EXACT [MA:0002610] +synonym: "kidney connecting tubule" EXACT [MA:0002610] +synonym: "tubulus renalis arcuatus" RELATED LATIN [http://en.wikipedia.org/wiki/Connecting_tubule] +xref: BTO:0004539 +xref: Connecting:tubule +xref: EMAPA:27758 +xref: EMAPA:27790 +xref: EMAPA:28011 +xref: MA:0002610 +is_a: UBERON:0007685 ! region of nephron tubule +is_a: UBERON:0012275 ! meso-epithelium +relationship: develops_from UBERON:0003220 {source="Wikipedia"} ! metanephric mesenchyme + +[Term] +id: UBERON:0005099 +name: short descending thin limb +def: "The short descending thin limb is the descending thin limb of a short nephron that has a squamous epithelial morphology[GO]." [GO:0072063] +is_a: UBERON:0004211 ! nephron epithelium +is_a: UBERON:0006914 ! squamous epithelium + +[Term] +id: UBERON:0005100 +name: long descending thin limb +def: "The long descending limb starts in the inner stripe of the outer medulla and extends into the inner medulla[GO]." [GO:0072064] +is_a: UBERON:0004211 ! nephron epithelium + +[Term] +id: UBERON:0005101 +name: early distal convoluted tubule +def: "The early distal convoluted tubule contains DCT cells and is vasopressin-insensitive[GO]." [GO:0072067] +xref: EMAPA:28393 +is_a: UBERON:0004211 ! nephron epithelium +is_a: UBERON:0012275 ! meso-epithelium +relationship: part_of UBERON:0001292 ! distal convoluted tubule + +[Term] +id: UBERON:0005102 +name: late distal convoluted tubule +def: "The late distal convoluted tubule contains DCT cells and intercalated (IC) alpha and beta cells and is vasopressin-sensitive[GO]." [GO:0072068] +xref: EMAPA:28393 +is_a: UBERON:0004211 ! nephron epithelium +is_a: UBERON:0012275 ! meso-epithelium +relationship: part_of UBERON:0001292 ! distal convoluted tubule + +[Term] +id: UBERON:0005103 +name: mesonephric epithelium +def: "An epithelium that is part of a mesonephros [Automatically generated definition]." [OBOL:automatic] +is_a: UBERON:0004819 ! kidney epithelium +is_a: UBERON:0012275 ! meso-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000080 ! mesonephros +relationship: part_of UBERON:0000080 ! mesonephros + +[Term] +id: UBERON:0005104 +name: anterior mesonephric tubule +def: "." [GO:0072165] +synonym: "cranial mesonephric tubule" EXACT [EMAPA:30562] +xref: EMAPA:30562 +is_a: UBERON:0000083 ! mesonephric tubule +disjoint_from: UBERON:0005105 {source="lexical"} ! posterior mesonephric tubule + +[Term] +id: UBERON:0005105 +name: posterior mesonephric tubule +def: "." [GO:0072166] +synonym: "caudal mesonephric tubule" EXACT [EMAPA:30574] +xref: EMAPA:30571 +is_a: UBERON:0000083 ! mesonephric tubule + +[Term] +id: UBERON:0005106 +name: metanephric tubule +def: "A metanephric tubule is an epithelial tube that is part of the metanephros[GO]." [GO:0072173] +xref: VHOG:0001526 +is_a: UBERON:0003914 ! epithelial tube +is_a: UBERON:0005108 ! metanephric epithelium +is_a: UBERON:0006555 ! excretory tube +intersection_of: UBERON:0003914 ! epithelial tube +intersection_of: part_of UBERON:0000081 ! metanephros + +[Term] +id: UBERON:0005107 +name: metanephric cap +def: "The metanephric cap is formed by the condensation of metanephric mesenchymal cells surrounding the ureteric bud tip[GO]. Mesenchyme closely apposed to the tips of the buds is called cap mesenchyme; it will later go on to form nephrons etc[GUDMAP]." [GO:0072185, http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] +synonym: "cap mesenchyme" EXACT [EMAPA:27621] +synonym: "condensed mesenchyme" RELATED [EMAPA:27621] +xref: EMAPA:27621 +xref: MA:0002997 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0003220 ! metanephric mesenchyme +relationship: surrounds UBERON:0000084 ! ureteric bud + +[Term] +id: UBERON:0005108 +name: metanephric epithelium +def: "An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure[GO]." [GO:0072207] +is_a: UBERON:0004819 ! kidney epithelium +is_a: UBERON:0012275 ! meso-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0000081 ! metanephros + +[Term] +id: UBERON:0005109 +name: metanephric smooth muscle tissue +def: "Any smooth muscle tissue that is part of a metanephros." [GO:0072208, https://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0001135 ! smooth muscle tissue +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0000081 ! metanephros + +[Term] +id: UBERON:0005110 +name: metanephric nephron +alt_id: UBERON:0005142 +def: "A metanephric nephron is the functional unit of the metanephros[GO]." [GO:0072273] +xref: VHOG:0000719 +is_a: UBERON:0001285 ! nephron +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001285 ! nephron +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: develops_from UBERON:0003220 {source="Wikipedia"} ! metanephric mesenchyme +relationship: develops_from UBERON:0003220 {source="http://en.wikipedia.org/wiki/Nephron"} ! metanephric mesenchyme +relationship: develops_from UBERON:0010535 ! primitive metanephric nephron +relationship: immediate_transformation_of UBERON:0010535 {source="Bgee:AN"} ! primitive metanephric nephron +relationship: part_of UBERON:0000081 ! metanephros + +[Term] +id: UBERON:0005111 +name: metanephric pyramid +def: "Metanephric pyramids are the conical masses that constitute the renal medulla in a metanephros; they contain the loops of Henle and the medullary collecting ducts[GO]." [GO:0072211] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004200 ! kidney pyramid +intersection_of: UBERON:0004200 ! kidney pyramid +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0000081 ! metanephros + +[Term] +id: UBERON:0005113 +name: metanephric cortex mesenchyme +xref: EHDAA2:0001140 +is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: develops_from UBERON:0010531 {source="EHDAA2"} ! metanephros induced blastemal cells + +[Term] +id: UBERON:0005114 +name: metanephric ascending thin limb +def: "The metanephric ascending thin limb is a segment of a nephron tubule in the metanephros lying in the inner medulla that is permeable to ions but not to water and has a simple epithelium; active transepithelial solute transport is absent[GO]." [GO:0072218] +is_a: UBERON:0004193 ! loop of Henle ascending limb thin segment +is_a: UBERON:0005146 ! metanephric nephron tubule +intersection_of: UBERON:0004193 ! loop of Henle ascending limb thin segment +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0005129 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephric distal tubule + +[Term] +id: UBERON:0005115 +name: metanephric cortical collecting duct +def: "The metanephric cortical collecting duct is the portion of the metanephric collecting duct that resides in the renal cortex[GO]." [GO:0072219] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004203 ! cortical collecting duct +intersection_of: UBERON:0004203 ! cortical collecting duct +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0004737 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephric collecting duct +relationship: part_of UBERON:0010533 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephros cortex + +[Term] +id: UBERON:0005116 +name: metanephric descending thin limb +def: "It extends to the tip of the metanephric loop of Henle[GO]." [GO:0072220] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005096 ! descending thin limb +intersection_of: UBERON:0005096 ! descending thin limb +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0005130 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephric loop of Henle + +[Term] +id: UBERON:0005117 +name: metanephric distal convoluted tubule +def: "The metanephric distal convoluted tubule is a portion of the metanephric nephron tubule that connects the metanephric loop of Henle to the collecting duct[GO]." [GO:0072221] +xref: VHOG:0001569 +is_a: UBERON:0001292 ! distal convoluted tubule +is_a: UBERON:0005146 ! metanephric nephron tubule +intersection_of: UBERON:0001292 ! distal convoluted tubule +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0010533 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephros cortex + +[Term] +id: UBERON:0005118 +name: metanephric early distal convoluted tubule +def: "The metanephric early distal convoluted tubule contains metanephric DCT cells and is vasopressin-insensitive[GO]." [GO:0072222] +is_a: UBERON:0005101 ! early distal convoluted tubule +is_a: UBERON:0005134 ! metanephric nephron epithelium +intersection_of: UBERON:0005101 ! early distal convoluted tubule +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0005117 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephric distal convoluted tubule +relationship: part_of UBERON:0005129 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephric distal tubule + +[Term] +id: UBERON:0005119 +name: metanephric glomerular mesangium +def: "The metanephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the metanephros, which helps to support the capillary loops in a renal glomerulus[GO]." [GO:0072223] +is_a: UBERON:0002320 ! glomerular mesangium +intersection_of: UBERON:0002320 ! glomerular mesangium +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0005133 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephric glomerulus vasculature + +[Term] +id: UBERON:0005120 +name: metanephric late distal convoluted tubule +def: "The metanephric late distal convoluted tubule contains metanephric DCT cells and intercalated (IC) alpha and beta cells and is vasopressin-sensitive[GO]." [GO:0072225] +is_a: UBERON:0005102 ! late distal convoluted tubule +is_a: UBERON:0005134 ! metanephric nephron epithelium +intersection_of: UBERON:0005102 ! late distal convoluted tubule +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0005117 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephric distal convoluted tubule +relationship: part_of UBERON:0005129 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephric distal tubule + +[Term] +id: UBERON:0005121 +name: metanephric long descending thin limb bend +def: "The metanephric long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment in the metanephros[GO]." [GO:0072226] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004206 ! long descending thin limb bend +intersection_of: UBERON:0004206 ! long descending thin limb bend +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0000081 ! metanephros + +[Term] +id: UBERON:0005122 +name: metanephric macula densa +def: "The metanephric macula densa is an area of specialized cells in the distal tubule of the metanephros that makes contact with the vascular pole of the glomerulus[GO]." [GO:0072227] +is_a: UBERON:0002335 ! macula densa +is_a: UBERON:0005134 ! metanephric nephron epithelium +intersection_of: UBERON:0002335 ! macula densa +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0004738 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephric juxtaglomerular apparatus + +[Term] +id: UBERON:0005123 +name: metanephric prebend segment +def: "The metanephric prebend segment is a part of the metanephric descending thin limb that lies before the bend and exhibits permeabilities characteristic of the ascending limb, especially negligible water permeability[GO]." [GO:0072228] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004207 ! prebend segment of loop of Henle +intersection_of: UBERON:0004207 ! prebend segment of loop of Henle +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0005116 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephric descending thin limb + +[Term] +id: UBERON:0005124 +name: metanephric proximal convoluted tubule +def: "The metanephric proximal convoluted tubule is the most proximal portion of the metanephric proximal tubule and extends from the metanephric glomerular capsule to the metanephric proximal straight tubule[GO]." [GO:0072229] +xref: VHOG:0001570 +is_a: UBERON:0001287 ! proximal convoluted tubule +is_a: UBERON:0005146 ! metanephric nephron tubule +intersection_of: UBERON:0001287 ! proximal convoluted tubule +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0010533 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephros cortex + +[Term] +id: UBERON:0005125 +name: metanephric proximal straight tubule +def: "The metanephric proximal straight tubule is the part of the metanephric descending limb that extends from the metanephric proximal convoluted tubule to the metanephric descending thin tubule[GO]." [GO:0072230] +is_a: UBERON:0001290 ! proximal straight tubule +is_a: UBERON:0005146 ! metanephric nephron tubule +intersection_of: UBERON:0001290 ! proximal straight tubule +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0005151 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephric proximal tubule + +[Term] +id: UBERON:0005126 +name: metanephric S1 +def: "The S1 portion is the initial portion of the metanephric proximal convoluted tubule and is responsible for avid reabsorption of water and solutes[GO]." [GO:0072231] +is_a: UBERON:0004196 ! proximal convoluted tubule segment 1 +intersection_of: UBERON:0004196 ! proximal convoluted tubule segment 1 +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0005124 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephric proximal convoluted tubule + +[Term] +id: UBERON:0005127 +name: metanephric thick ascending limb +def: "At the macula densa, the thick ascending limb connects to the distal convoluted tubule[GO]." [GO:0072233] +is_a: UBERON:0001291 ! thick ascending limb of loop of Henle +is_a: UBERON:0005146 ! metanephric nephron tubule +intersection_of: UBERON:0001291 ! thick ascending limb of loop of Henle +intersection_of: part_of UBERON:0000081 ! metanephros + +[Term] +id: UBERON:0005129 +name: metanephric distal tubule +alt_id: UBERON:0005150 +def: "The metanephric distal tubule is a metanephric nephron tubule that begins at the metanephric macula densa and extends to the metanephric connecting tubule[GO]." [GO:0072235] +is_a: UBERON:0004135 ! distal tubule +is_a: UBERON:0005146 ! metanephric nephron tubule +intersection_of: UBERON:0004135 ! distal tubule +intersection_of: part_of UBERON:0000081 ! metanephros + +[Term] +id: UBERON:0005130 +name: metanephric loop of Henle +def: "The metanephric loop of Henle is a metanephric nephron tubule that connects the proximal convoluted tubule to the distal convoluted tubule in the metanephros[GO]." [GO:0072236] +is_a: UBERON:0001288 ! loop of Henle +is_a: UBERON:0005146 ! metanephric nephron tubule +intersection_of: UBERON:0001288 ! loop of Henle +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0004136 ! intermediate tubule + +[Term] +id: UBERON:0005132 +name: metanephric long nephron +def: "Long nephrons are associated with juxtamedullary glomeruli and extend into the inner medulla in the metanephros[GO]." [GO:0072238] +is_a: UBERON:0004194 ! long nephron +is_a: UBERON:0005110 ! metanephric nephron +intersection_of: UBERON:0004194 ! long nephron +intersection_of: part_of UBERON:0000081 ! metanephros + +[Term] +id: UBERON:0005133 +name: metanephric glomerulus vasculature +alt_id: UBERON:0005143 +def: "The metanephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the metanephric glomerulus[GO]." [GO:0072239] +is_a: UBERON:0004190 ! renal glomerulus vasculature +intersection_of: UBERON:0004190 ! renal glomerulus vasculature +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0004736 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephric glomerulus + +[Term] +id: UBERON:0005134 +name: metanephric nephron epithelium +def: "The metanephric nephron epithelium is a tissue that covers the surface of a nephron in the metanephros[GO]." [GO:0072243] +is_a: UBERON:0004211 ! nephron epithelium +is_a: UBERON:0005108 ! metanephric epithelium +intersection_of: UBERON:0004211 ! nephron epithelium +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0005110 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephric nephron + +[Term] +id: UBERON:0005135 +name: metanephric glomerular epithelium +def: "A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros[GO]." [GO:0072244] +is_a: UBERON:0004188 ! glomerular epithelium +is_a: UBERON:0005134 ! metanephric nephron epithelium +intersection_of: UBERON:0004188 ! glomerular epithelium +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0004736 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephric glomerulus + +[Term] +id: UBERON:0005136 +name: metanephric glomerular endothelium +def: "The metanephric glomerular endothelium is an epithelial tissue that covers the internal surfaces of the glomerulus of the metanephros[GO]." [GO:0072264] +is_a: UBERON:0004189 ! glomerular endothelium +is_a: UBERON:0005135 ! metanephric glomerular epithelium +intersection_of: UBERON:0004189 ! glomerular endothelium +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0005133 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephric glomerulus vasculature + +[Term] +id: UBERON:0005137 +name: metanephric capsule +alt_id: UBERON:0005112 +def: "The metanephric capsule is the tough fibrous layer surrounding the metanephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage[GO]." [GO:0072213] +is_a: UBERON:0002015 ! kidney capsule +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0002015 ! kidney capsule +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0000081 ! metanephros + +[Term] +id: UBERON:0005139 +name: metanephric long descending thin limb +is_a: UBERON:0005100 ! long descending thin limb +is_a: UBERON:0005134 ! metanephric nephron epithelium +intersection_of: UBERON:0005100 ! long descending thin limb +intersection_of: part_of UBERON:0000081 ! metanephros + +[Term] +id: UBERON:0005140 +name: metanephric short nephron +def: "Short nephrons are associated with mid-cortical and superficial glomeruli, are situated entirely in the outer medulla, and have no thin ascending limb[GO]." [GO:0072270] +is_a: UBERON:0004195 ! short nephron +is_a: UBERON:0005110 ! metanephric nephron +intersection_of: UBERON:0004195 ! short nephron +intersection_of: part_of UBERON:0000081 ! metanephros + +[Term] +id: UBERON:0005141 +name: metanephric short descending thin limb +def: "The metanephric short descending thin limb is the descending thin limb of a short nephron in the metanephros that has a squamous epithelial morphology[GO]." [GO:0072271] +is_a: UBERON:0005099 ! short descending thin limb +is_a: UBERON:0005134 ! metanephric nephron epithelium +intersection_of: UBERON:0005099 ! short descending thin limb +intersection_of: part_of UBERON:0000081 ! metanephros + +[Term] +id: UBERON:0005144 +name: metanephric glomerular capillary +def: "This process pertains to the initial formation of a structure from unspecified parts[GO]." [GO:0072277] +is_a: UBERON:0004212 ! glomerular capillary +intersection_of: UBERON:0004212 ! glomerular capillary +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0004736 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephric glomerulus +relationship: part_of UBERON:0005110 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephric nephron + +[Term] +id: UBERON:0005145 +name: metanephric comma-shaped body +def: "The metanephric comma-shaped body is the precursor structure to the metanephric S-shaped body that contributes to the morphogenesis of a nephron in the metanephros[GO]." [GO:0072278] +is_a: UBERON:0004198 ! comma-shaped body +intersection_of: UBERON:0004198 ! comma-shaped body +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0000081 ! metanephros + +[Term] +id: UBERON:0005146 +name: metanephric nephron tubule +alt_id: UBERON:0005128 +alt_id: UBERON:0005152 +def: "A metanephric nephron tubule is an epithelial tube that is part of the metanephric nephron, the functional part of the metanephros[GO]." [GO:0072282] +is_a: UBERON:0001231 ! nephron tubule +is_a: UBERON:0005106 ! metanephric tubule +is_a: UBERON:0005134 ! metanephric nephron epithelium +intersection_of: UBERON:0001231 ! nephron tubule +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: develops_from UBERON:0003220 {source="ISBN:9780878932504"} ! metanephric mesenchyme + +[Term] +id: UBERON:0005147 +name: metanephric renal vesicle +def: "The renal vesicle is the primordial structure of the metanephric nephron epithelium, and is formed by the condensation of mesenchymal cells[GO]." [GO:0072283] +synonym: "metanephric vesicle" EXACT [] +xref: EHDAA2:0001245 +xref: EHDAA:9346 +xref: EMAPA:27678 +is_a: UBERON:0004209 ! renal vesicle +is_a: UBERON:0005108 ! metanephric epithelium +intersection_of: UBERON:0004209 ! renal vesicle +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: develops_from UBERON:0005113 {source="EHDAA2"} ! metanephric cortex mesenchyme +relationship: has_potential_to_develop_into UBERON:0005134 ! metanephric nephron epithelium + +[Term] +id: UBERON:0005148 +name: metanephric S-shaped body +def: "The metanephric S-shaped body is the successor of the metanephric comma-shaped body that contributes to the morphogenesis of a nephron in the metanephros[GO]." [GO:0072284] +is_a: UBERON:0004199 ! S-shaped body +intersection_of: UBERON:0004199 ! S-shaped body +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0005110 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephric nephron + +[Term] +id: UBERON:0005149 +name: metanephric connecting tubule +def: "The metanephric connecting tubule is a tubular segment of the metanephric nephron; it connects the distal convoluted tubule to the collecting duct in the metanephros[GO]." [GO:0072286] +is_a: UBERON:0005097 ! renal connecting tubule +is_a: UBERON:0005146 ! metanephric nephron tubule +intersection_of: UBERON:0005097 ! renal connecting tubule +intersection_of: part_of UBERON:0000081 ! metanephros + +[Term] +id: UBERON:0005151 +name: metanephric proximal tubule +alt_id: UBERON:0005131 +def: "The metanephric proximal tubule is a metanephric nephron tubule that connects Bowman's capsule to the descending thin limb of the loop of Henle in the metanephros. It has a brush border epithelial morphology[GO]." [GO:0072288] +is_a: UBERON:0004134 ! proximal tubule +is_a: UBERON:0005146 ! metanephric nephron tubule +intersection_of: UBERON:0004134 ! proximal tubule +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0010533 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! metanephros cortex + +[Term] +id: UBERON:0005153 +name: epithelial bud +def: "A bud is a protrusion that forms from an epithelial sheet by localized folding." [GO:0060572] +xref: BTO:0001639 +is_a: UBERON:0005157 ! epithelial fold + +[Term] +id: UBERON:0005154 +name: epithelial cord +def: "A cord of epithelial cells without a lumen and usually several cells thick." [AEO:0000216] +xref: AEO:0000216 +xref: EHDAA2:0004052 +is_a: UBERON:0000486 {source="AEO"} ! multilaminar epithelium + +[Term] +id: UBERON:0005155 +name: open tracheal system +def: "An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster." [GO:0007424] +subset: uberon_slim +synonym: "invertebrate tracheal system" EXACT [] +synonym: "open tracheal system" EXACT [] +synonym: "tracheal system" BROAD SENSU [FBbt:00005024] +xref: BTO:0003870 +xref: FBbt:00005024 +xref: SPD:0000427 +xref: TADS:0000043 +is_a: UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0005156 +name: reproductive structure +def: "Any anatomical structure that is part of the reproductive system." [http://orcid.org/0000-0002-6601-2165] +subset: grouping_class +synonym: "reproductive system element" EXACT [] +synonym: "reproductive system structure" EXACT [] +is_a: UBERON:0010000 ! multicellular anatomical structure +intersection_of: UBERON:0010000 ! multicellular anatomical structure +intersection_of: part_of UBERON:0000990 ! reproductive system +relationship: part_of UBERON:0000990 ! reproductive system + +[Term] +id: UBERON:0005157 +name: epithelial fold +def: "An epithelial sheet bent on a linear axis." [GO:0060571] +is_a: UBERON:0000483 ! epithelium + +[Term] +id: UBERON:0005158 +name: parenchyma of central nervous system +def: "The functional tissue of the central nervous system consisting of neurons and glial cells." [CL:tm, https://github.com/obophenotype/uberon/issues/8] +synonym: "central nervous system parenchyma" EXACT [OBOL:automatic] +synonym: "CNS parenchyma" EXACT [OBOL:automatic] +synonym: "parenchyma of central nervous system" EXACT [] +synonym: "parenchyma of CNS" EXACT [OBOL:automatic] +is_a: UBERON:0000353 ! parenchyma +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000353 ! parenchyma +intersection_of: part_of UBERON:0001017 ! central nervous system +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan +relationship: part_of UBERON:0001017 ! central nervous system + +[Term] +id: UBERON:0005159 +name: pyramid of medulla oblongata +def: "The anterior or ventral portion of the medulla oblongata is named the pyramid and lies between the anterior median fissure and the antero-lateral sulcus. Its upper end is slightly constricted, and between it and the pons the fibers of the abducent nerve emerge; a little below the pons it becomes enlarged and prominent, and finally tapers into the anterior funiculus of the medulla spinalis, with which, at first sight, it appears to be directly continuous[WP]." [http://en.wikipedia.org/wiki/Pyramid_(brainstem)] +synonym: "lobule VIII of Larsell" EXACT [FMA:75254] +synonym: "medullary pyramid" BROAD [FMA:75254] +synonym: "pyramid of medulla" BROAD [FMA:75254] +synonym: "pyramid of medulla oblongata" EXACT [http://en.wikipedia.org/wiki/Pyramid_(brainstem)] +synonym: "pyramis (medullae oblongatae)" EXACT LATIN [FMA:75254, FMA:TA] +synonym: "pyramis bulbi" EXACT LATIN [FMA:75254, FMA:TA] +synonym: "pyramis medullae oblongatae" EXACT LATIN [FMA:75254, FMA:TA] +xref: BAMS:pym +xref: BM:Me-Py +xref: DHBA:12535 +xref: FMA:75254 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=705 +xref: http://www.snomedbrowser.com/Codes/Details/279289009 +xref: http://www.snomedbrowser.com/Codes/Details/9535007 +xref: Pyramid:(brainstem) +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001896 ! medulla oblongata + +[Term] +id: UBERON:0005160 +name: vestigial structure +def: "A remnant structure from earlier development or evolution." [PATOC:MAH] +xref: http://en.wikipedia.org/wiki/Vestigiality +is_a: UBERON:0000061 ! anatomical structure + +[Term] +id: UBERON:0005161 +name: pelvic spur +def: "Pelvic spurs are the externally visible portion of the vestigial remnants of legs found on each side of the vent in primitive snakes, such as boas and pythons. The remnants of a pelvis and femur, which have no connection with the spine, simply 'float' in the muscle mass. The femur protrudes from the snake's body and is covered by a corneal spur, which resembles a claw. Males' spurs are generally longer and more pointed than females', and are used for clasping and tickling during courtship and mating, as well as combat with other males in some species" [http://en.wikipedia.org/wiki/Pelvic_spur] +synonym: "anal spur" RELATED [http://en.wikipedia.org/wiki/Anal_spur] +synonym: "cloacal spur" RELATED [] +xref: Pelvic:spur +is_a: UBERON:0000026 ! appendage +is_a: UBERON:0005160 ! vestigial structure + +[Term] +id: UBERON:0005162 +name: multi cell part structure +def: "A structure consisting of multiple cell components but which is not itself a cell and does not have (complete) cells as a part." [CARO:0001000] +subset: upper_level +synonym: "cell part cluster" RELATED [FMA:83115] +synonym: "multi-cell-component structure" EXACT [CARO:0001000] +synonym: "multi-cell-part structure" EXACT [CARO:0001000] +xref: AAO:0011000 +xref: CARO:0001000 +xref: FBbt:00007060 +xref: FMA:83115 +is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster + +[Term] +id: UBERON:0005164 +name: ascending limb of loop of Henle +def: "The distal part of the loop of Henle that is impermeable to water and actively pumps sodium out of the filtrate to generate the hypertonic interstitium that drives countercurrent exchange; it consists of an initial very thin segment lined by simple squamous epithelium followed by a distal thick segment lined by simple cuboidal epithelium[MP]." [http://en.wikipedia.org/wiki/Ascending_limb_of_loop_of_Henle, MP:0011342] +subset: pheno_slim +subset: uberon_slim +synonym: "ascending limb" BROAD [] +synonym: "ascending limb of Henle's loop" EXACT [] +synonym: "distal straight tubule" RELATED [] +synonym: "loop of Henle ascending limb" EXACT [MP:0011342] +xref: EMAPA:35510 +xref: FMA:17717 +xref: http://en.wikipedia.org/wiki/Ascending_limb_of_loop_of_Henle +xref: http://linkedlifedata.com/resource/umls/id/C0227658 +xref: http://www.snomedbrowser.com/Codes/Details/245434005 +xref: MA:0001676 +xref: NCIT:C32154 +xref: UMLS:C0227658 {source="ncithesaurus:Ascending_Limb_of_the_Henle_s_Loop"} +is_a: UBERON:0004135 ! distal tubule +relationship: contributes_to_morphology_of UBERON:0001288 ! loop of Henle +relationship: part_of UBERON:0001288 ! loop of Henle + +[Term] +id: UBERON:0005167 +name: papillary duct +def: "The terminal portions of the medullary collecting ducts are the papillary ducts, which end at the renal papilla and empty into a minor calyx." [http://encyclopedia.thefreedictionary.com/] +subset: pheno_slim +synonym: "Bellini's duct" RELATED [MP:0011331] +synonym: "duct of Bellini" RELATED [] +synonym: "papillary duct" EXACT [] +synonym: "papillary duct of kidney" EXACT [] +synonym: "renal papillary duct" EXACT [] +xref: BTO:0004540 +xref: EMAPA:35655 +xref: http://en.wikipedia.org/wiki/Duct_of_Bellini +xref: http://www.snomedbrowser.com/Codes/Details/110623009 +xref: MA:0001646 +is_a: UBERON:0001232 ! collecting duct of renal tubule + +[Term] +id: UBERON:0005168 +name: renal interlobular vein +def: "Any of the veins that parallel the interlobular arteries, receiving blood from the peritubular capillary plexus and empty into the arcuate veins" [ISBN:0-683-40008-8, MP:0011326] +subset: pheno_slim +synonym: "interlobular vein" EXACT [MA:0002594] +synonym: "interlobular veins of kidney" RELATED [FMA:71634] +synonym: "set of interlobular veins of kidney" RELATED [FMA:71634] +synonym: "venae interlobulares renis" EXACT LATIN [FMA:71634, FMA:TA] +synonym: "venae interlobulares renis" RELATED LATIN [http://en.wikipedia.org/wiki/Interlobular_veins] +xref: EMAPA:28218 +xref: FMA:71634 +xref: Interlobular:veins +xref: MA:0002594 +is_a: UBERON:0013126 ! vein of abdomen +is_a: UBERON:0014401 ! renal venous blood vessel +disjoint_from: UBERON:0009887 ! interlobar vein +relationship: part_of UBERON:0001225 ! cortex of kidney + +[Term] +id: UBERON:0005169 +name: interstitial tissue +def: "connective tissue between the cellular elements of a structure." [http://medical-dictionary.thefreedictionary.com/tissue] +subset: pheno_slim +synonym: "interstitium" EXACT [] +xref: FMA:86301 +xref: http://www.snomedbrowser.com/Codes/Details/85293002 +is_a: UBERON:0003891 {source="FMA"} ! stroma + +[Term] +id: UBERON:0005170 +name: granulosa cell layer +def: "A layer of the ovarian follicle that consists of granulosa cells." [http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: vertebrate_core +synonym: "granulosa cell layer" RELATED [TAO:0001112] +synonym: "granulosa cell layer of ovarian follicle" EXACT [FMA:18660] +synonym: "granulosa cell layers" RELATED PLURAL [ZFA:0001112] +synonym: "membrana granulosa" BROAD [] +synonym: "membrana granulosa of ovarian follicle" EXACT [FMA:18660] +synonym: "ovary stratum granulosum" EXACT [MA:0001460] +synonym: "stratum granulosum of ovarian follicle" EXACT [FMA:18660] +xref: EFO:0003628 +xref: EMAPA:35633 +xref: FMA:18660 +xref: http://www.snomedbrowser.com/Codes/Details/258971005 +xref: MA:0001460 +xref: Membrana:granulosa +xref: TAO:0001112 +xref: ZFA:0001112 +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004911 ! epithelium of female gonad +is_a: UBERON:0012275 ! meso-epithelium +relationship: part_of UBERON:0001305 ! ovarian follicle + +[Term] +id: UBERON:0005171 +name: hepatic duct +def: "Any portion of the ducts that carry bile from the liver to the common bile duct. This may include both intrahapetic components (parts of left and right hepatic ducts) and extrahapetic components (common hepatic duct, plus hilar portion)." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +subset: vertebrate_core +xref: EHDAA2:0000741 +xref: EHDAA:3049 +xref: EMAPA:16843 +xref: FMA:71891 +xref: galen:HepaticDuct +xref: http://linkedlifedata.com/resource/umls/id/C0917710 +xref: http://www.snomedbrowser.com/Codes/Details/245399002 +xref: MA:0000357 +xref: NCIT:C32730 +xref: OpenCyc:Mx4rvWo8WJwpEbGdrcN5Y29ycA +xref: UMLS:C0917710 {source="ncithesaurus:Hepatic_Duct"} +xref: VHOG:0000219 +is_a: UBERON:0002394 ! bile duct +relationship: connects UBERON:0001174 ! common bile duct +relationship: connects UBERON:0002107 ! liver + +[Term] +id: UBERON:0005172 +name: abdomen element +def: "An organ or element that is in the abdomen. Examples: spleen, intestine, kidney, abdominal mammary gland." [http://orcid.org/0000-0002-6601-2165] +subset: non_informative +synonym: "abdomen organ" EXACT [MA:0000522] +xref: http://www.snomedbrowser.com/Codes/Details/272631008 +xref: MA:0000522 +is_a: UBERON:0005173 ! abdominal segment element +intersection_of: UBERON:0000062 ! organ +intersection_of: part_of UBERON:0000916 ! abdomen +relationship: part_of UBERON:0000916 ! abdomen + +[Term] +id: UBERON:0005173 +name: abdominal segment element +def: "An organ or element that is part of the adbominal segment of the organism. This region can be further subdivided into the abdominal cavity and the pelvic region." [http://orcid.org/0000-0002-6601-2165] +subset: non_informative +synonym: "abdominal segment organ" EXACT [MA:0000529] +xref: EMAPA:37062 {source="MA:th"} +xref: MA:0000529 +is_a: UBERON:0005177 ! trunk region element +intersection_of: UBERON:0000062 ! organ +intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk +relationship: part_of UBERON:0002417 ! abdominal segment of trunk + +[Term] +id: UBERON:0005174 +name: dorsal region element +def: "An organ or element that part of the dorsum of the organism. Examples: spinal cord, vertebrae, muscles of back." [http://orcid.org/0000-0002-6601-2165] +subset: non_informative +synonym: "back organ" EXACT [MA:0001901] +synonym: "dorsal region organ" EXACT [] +xref: EMAPA:37274 {source="MA:th"} +xref: MA:0001901 +is_a: UBERON:0000062 ! organ +intersection_of: UBERON:0000062 ! organ +intersection_of: part_of UBERON:0001137 ! dorsum +relationship: part_of UBERON:0001137 ! dorsum + +[Term] +id: UBERON:0005175 +name: chest organ +def: "An organ that is part of a chest [Automatically generated definition]." [OBOL:automatic] +subset: non_informative +subset: organ_slim +xref: EMAPA:37272 {source="MA:th"} +xref: MA:0000552 +is_a: UBERON:0005181 ! thoracic segment organ +intersection_of: UBERON:0000062 ! organ +intersection_of: part_of UBERON:0001443 ! chest +relationship: part_of UBERON:0001443 ! chest + +[Term] +id: UBERON:0005176 +name: tooth enamel organ +def: "A circumscribed mass of ectodermal cells which bud off from the dental lamina; it becomes cup-shaped and develops on its internal face the ameloblast layer of cells that produces the enamel cap of a developing tooth." [http://en.wikipedia.org/wiki/Enamel_organ, https://github.com/cerivs/zebrafish-anatomical-ontology/issues/107, https://github.com/obophenotype/uberon/issues/1313, ISBN:0-683-40008-8, MP:0010747] +comment: . Alternate definition: A cellular aggregation seen in histologic sections of a developing tooth. It lies above a condensation of ectomesenchymal cells called the odontogenic papilla. +subset: pheno_slim +subset: vertebrate_core +synonym: "dental organ" EXACT [ZFA:0005138] +synonym: "enamel organ" EXACT [MP:0010747] +synonym: "odontogenic organ" RELATED [] +synonym: "organum enameleum" RELATED LATIN [http://en.wikipedia.org/wiki/Enamel_organ] +xref: BTO:0001722 +xref: CALOHA:TS-0271 +xref: EMAPA:32888 +xref: Enamel:organ +xref: FMA:312389 +xref: http://www.snomedbrowser.com/Codes/Details/362863002 +xref: MA:0001604 +xref: MESH:A14.254.900.720.265 +xref: TAO:0005138 +xref: ZFA:0005138 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0034922 ! cell cluster +relationship: part_of UBERON:0008281 ! tooth bud + +[Term] +id: UBERON:0005177 +name: trunk region element +def: "An organ or element that part of the trunk region. The trunk region can be further subdividied into thoracic (including chest and thoracic cavity) and abdominal (including abdomen and pelbis) regions." [http://orcid.org/0000-0002-6601-2165] +subset: non_informative +subset: organ_slim +synonym: "trunk organ" EXACT [MA:0000516] +xref: EMAPA:37270 {source="MA:th"} +xref: MA:0000516 +is_a: UBERON:0000062 ! organ +intersection_of: UBERON:0000062 ! organ +intersection_of: part_of UBERON:0002100 ! trunk +relationship: part_of UBERON:0002100 ! trunk + +[Term] +id: UBERON:0005178 +name: thoracic cavity element +def: "An organ or element that is in the thoracic cavity. Examples: lung, heart, longus colli." [http://orcid.org/0000-0002-6601-2165] +subset: non_informative +subset: pheno_slim +synonym: "thoracic cavity organ" EXACT [MA:0000557] +xref: EMAPA:37273 {source="MA:th"} +xref: MA:0000557 +is_a: UBERON:0002075 ! viscus +is_a: UBERON:0005181 ! thoracic segment organ +intersection_of: UBERON:0000062 ! organ +intersection_of: located_in UBERON:0002224 ! thoracic cavity +relationship: located_in UBERON:0002224 ! thoracic cavity + +[Term] +id: UBERON:0005179 +name: pelvic region element +def: "An organ or element that is part of the pelvic region. Examples: reproductive organs (in some organisms), urinary bladder, bones of the pelvis." [http://orcid.org/0000-0002-6601-2165] +subset: non_informative +subset: organ_slim +subset: pheno_slim +synonym: "pelvic element" EXACT [] +synonym: "pelvis organ" EXACT [MA:0000543] +synonym: "pelvis region organ" EXACT [] +xref: EMAPA:37275 {source="MA:th"} +xref: MA:0000543 +is_a: UBERON:0005173 ! abdominal segment element +intersection_of: UBERON:0000062 ! organ +intersection_of: part_of UBERON:0002355 ! pelvic region of trunk +relationship: part_of UBERON:0002355 ! pelvic region of trunk + +[Term] +id: UBERON:0005180 +name: obsolete lymph organ +is_obsolete: true +consider: MA:0000747 + +[Term] +id: UBERON:0005181 +name: thoracic segment organ +def: "An organ that part of the thoracic segment region. This region can be further subdividied chest and thoracic cavity regions." [http://orcid.org/0000-0002-6601-2165] +subset: non_informative +synonym: "upper body organ" RELATED [MA:0000563] +xref: EMAPA:37271 {source="MA:th"} +xref: MA:0000563 +is_a: UBERON:0005177 ! trunk region element +intersection_of: UBERON:0000062 ! organ +intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk +relationship: part_of UBERON:0000915 ! thoracic segment of trunk + +[Term] +id: UBERON:0005184 +name: hair medulla +def: "Innermost layer of the hair shaft." [http://en.wikipedia.org/wiki/Bone_marrow_of_ovary_(hair)] +subset: pheno_slim +synonym: "medulla of hair shaft" RELATED [BTO:0004671] +xref: BTO:0004671 +xref: EMAPA:35389 +xref: http://en.wikipedia.org/wiki/Bone_marrow_of_ovary_(hair) +xref: http://www.snomedbrowser.com/Codes/Details/318929009 +xref: MA:0000158 +is_a: UBERON:0000958 ! medulla of organ +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000958 ! medulla of organ +intersection_of: part_of UBERON:0001037 ! strand of hair +relationship: part_of UBERON:0001037 ! strand of hair + +[Term] +id: UBERON:0005185 +name: renal medulla collecting duct +def: "The portion of the collecting duct that resides in the renal medulla" [http://orcid.org/0000-0002-6601-2165] +synonym: "kidney medulla collecting duct" EXACT [MA:0002935] +synonym: "medullary collecting duct" EXACT [EMAPA:28061] +xref: BTO:0004536 +xref: EMAPA:28061 +xref: EMAPA:35459 +xref: MA:0002935 +is_a: UBERON:0013522 ! subdivision of tube +intersection_of: UBERON:0013522 ! subdivision of tube +intersection_of: part_of UBERON:0000362 ! renal medulla +intersection_of: part_of UBERON:0001232 ! collecting duct of renal tubule +relationship: part_of UBERON:0000362 ! renal medulla +relationship: part_of UBERON:0001232 ! collecting duct of renal tubule + +[Term] +id: UBERON:0005188 +name: obsolete caput epididymis +is_obsolete: true +replaced_by: UBERON:0004358 + +[Term] +id: UBERON:0005189 +name: obsolete corpus epididymis +is_obsolete: true +replaced_by: UBERON:0004359 + +[Term] +id: UBERON:0005190 +name: obsolete cauda epididymis +is_obsolete: true +replaced_by: UBERON:0004360 + +[Term] +id: UBERON:0005191 +name: obsolete cervical artery +def: "An artery that is part of a uterine cervix [Automatically generated definition]." [OBOL:automatic] +is_obsolete: true + +[Term] +id: UBERON:0005192 +name: deferent duct artery +def: "An artery in males that provides blood to the vas deferens. The artery usually arises from the anterior trunk of the superior vesical artery. It accompanies the vas deferens into the testis, where it anastomoses with the testicular artery. In this way it also supplies blood to the testis and epididymis. A small branch supplies the ureter[WP]." [http://en.wikipedia.org/wiki/Artery_to_the_ductus_deferens] +synonym: "arteria ductus deferentis" EXACT LATIN [http://en.wikipedia.org/wiki/Artery_to_the_ductus_deferens] +synonym: "artery of ductus deferens" EXACT [FMA:18930] +synonym: "ductus deferens artery" EXACT [FMA:18930] +synonym: "vas deferens artery" EXACT [] +xref: EMAPA:37513 {source="MA:th"} +xref: FMA:18930 +xref: http://en.wikipedia.org/wiki/Artery_to_the_ductus_deferens +xref: http://www.snomedbrowser.com/Codes/Details/279659005 +xref: MA:0001940 +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0001000 ! vas deferens +relationship: branching_part_of UBERON:0001310 {source="FMA"} ! umbilical artery +relationship: branching_part_of UBERON:0001312 {source="Wikipedia"} ! superior vesical artery +relationship: part_of UBERON:0001310 ! umbilical artery +relationship: part_of UBERON:0001312 ! superior vesical artery +relationship: part_of UBERON:0005352 ! spermatic cord +relationship: supplies UBERON:0001000 ! vas deferens + +[Term] +id: UBERON:0005193 +name: ethmoidal artery +def: "One of: anterior or posterior ethmoidal arteries." [http://en.wikipedia.org/wiki/Ethmoidal_arteries] +subset: grouping_class +synonym: "ethmoid artery" EXACT [] +xref: EMAPA:37081 {source="MA:th"} +xref: Ethmoidal:arteries +xref: http://linkedlifedata.com/resource/umls/id/C0226184 +xref: http://www.snomedbrowser.com/Codes/Details/244222007 +xref: MA:0001949 +xref: NCIT:C52855 +xref: UMLS:C0226184 {source="ncithesaurus:Ethmoidal_Artery"} +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +union_of: UBERON:0012318 ! anterior ethmoidal artery +union_of: UBERON:0012319 ! posterior ethmoidal artery +relationship: branching_part_of UBERON:0001619 {source="FMA-abduced"} ! ophthalmic artery +relationship: part_of UBERON:0001619 ! ophthalmic artery + +[Term] +id: UBERON:0005194 +name: thoracic vein +def: "A vein that is part of a thorax [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:37197 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C0226629 +xref: http://www.snomedbrowser.com/Codes/Details/281472008 +xref: MA:0002235 +xref: NCIT:C53142 +xref: UMLS:C0226629 {source="ncithesaurus:Thoracic_Vein"} +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003834 ! thoracic segment blood vessel +intersection_of: UBERON:0001638 ! vein +intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk + +[Term] +id: UBERON:0005195 +name: deferent duct vein +def: "A vein that is part of a vas deferens [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:37514 {source="MA:th"} +xref: MA:0002100 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0001638 ! vein +intersection_of: part_of UBERON:0001000 ! vas deferens +relationship: part_of UBERON:0001000 ! vas deferens + +[Term] +id: UBERON:0005196 +name: spleen germinal center +def: "A germinal center that is part of the spleen. The spleen germinal center is located in a secondary B follicle in the white pulp of the spleen." [CL:tm, https://github.com/obophenotype/uberon/issues/6] +subset: pheno_slim +synonym: "germinal center of spleen" EXACT [] +synonym: "spleen follicle center" EXACT [MP:0008474] +synonym: "spleen GC" EXACT [MP:0008474] +synonym: "splenic germinal center" EXACT [MP:0008474] +xref: EMAPA:35803 +xref: http://linkedlifedata.com/resource/umls/id/C1710156 +xref: MA:0000764 +xref: NCIT:C49760 +xref: UMLS:C1710156 {source="ncithesaurus:Spleen_Germinal_Center"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010754 ! germinal center +intersection_of: UBERON:0010754 ! germinal center +intersection_of: part_of UBERON:0002106 ! spleen +relationship: contributes_to_morphology_of UBERON:0004042 ! spleen secondary B follicle +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan +relationship: part_of UBERON:0004042 {source="CL:tm"} ! spleen secondary B follicle + +[Term] +id: UBERON:0005197 +name: segmental spinal nerve +synonym: "cervical segmental spinal nerves C1-7" EXACT [EHDAA2:0001822] +xref: EHDAA:3778 +xref: EMAPA:16990 +xref: EMAPA:25149 +xref: MA:0000234 +xref: VHOG:0000920 +is_a: UBERON:0001780 {source="MA"} ! spinal nerve +relationship: develops_from UBERON:0000044 {source="EHDAA2"} ! dorsal root ganglion +relationship: develops_from UBERON:0001806 {source="EHDAA2"} ! sympathetic ganglion + +[Term] +id: UBERON:0005198 +name: obsolete coat hair bulb +is_obsolete: true + +[Term] +id: UBERON:0005199 +name: cervical mammary gland +def: "A mammary gland that is part of a cervical region." [OBOL:automatic] +xref: MA:0000789 +is_a: UBERON:0001911 ! mammary gland +intersection_of: UBERON:0001911 ! mammary gland +intersection_of: part_of UBERON:0005434 ! cervical region +relationship: part_of UBERON:0005434 ! cervical region + +[Term] +id: UBERON:0005200 +name: thoracic mammary gland +def: "A lactiferous gland that is located in the thoracic region/breast." [http://en.wikipedia.org/wiki/Mammary_gland#Other_mammals, https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "anterior mammary gland" RELATED [http://en.wikipedia.org/wiki/Mammary_gland#Other_mammals] +synonym: "breast mammary gland" EXACT [] +synonym: "lactiferous gland" BROAD SENSU [FMA:62088] +synonym: "mammary gland" BROAD SENSU [FMA:62088] +xref: EHDAA2:0001056 +xref: EHDAA:6524 +xref: EMAPA:36633 +xref: FMA:62088 +xref: http://www.snomedbrowser.com/Codes/Details/31448001 +xref: MA:0000797 +xref: Other_mammals +is_a: UBERON:0001911 ! mammary gland +is_a: UBERON:0005175 ! chest organ +intersection_of: UBERON:0001911 ! mammary gland +intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk +relationship: fma_set_term FMA:57983 +relationship: part_of UBERON:0000310 {source="BTO"} ! breast + +[Term] +id: UBERON:0005201 +name: obsolete cervical trunk +comment: was obsolete as it was defined incorrectly. See Fig97 of The Anatomy of the Laboratory Mouse. May be included in future versions of this ontology that include more detailed relationships and comparisons of the arterial system +xref: http://www.informatics.jax.org/cookbook/figures/figure97.shtml +is_obsolete: true +consider: MA:0001937 + +[Term] +id: UBERON:0005202 +name: distal straight tubule macula densa +def: "A macula densa that is part of an ascending limb of loop of Henle [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:28399 +xref: MA:0002604 +is_a: UBERON:0002335 ! macula densa +intersection_of: UBERON:0002335 ! macula densa +intersection_of: part_of UBERON:0001291 ! thick ascending limb of loop of Henle +relationship: part_of UBERON:0001291 {source="MA"} ! thick ascending limb of loop of Henle +relationship: part_of UBERON:0006853 {source="MA"} ! renal cortex tubule + +[Term] +id: UBERON:0005203 +name: trachea gland +def: "a tubuloacinar seromucous gland that is located principally in the submucosa of the trachea. Excretory ducts from this gland pass through the lamina propria to the tracheal lumen." [http://medical-dictionary.thefreedictionary.com/tracheal+glands, http://www.ncbi.nlm.nih.gov/pubmed/15973734, https://github.com/obophenotype/uberon/issues/1197, ISBN:1451113412, MGI:Anna] +subset: organ_slim +subset: pheno_slim +synonym: "glandula trachealis" EXACT [FMA:7473] +synonym: "tracheal gland" EXACT [FMA:7473] +synonym: "tubular seromucous gland of trachea" RELATED [FMA:7473] +xref: EMAPA:36574 +xref: FMA:7473 +xref: http://www.snomedbrowser.com/Codes/Details/197423006 +xref: MA:0002937 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0011148 ! submucosal gland +is_a: UBERON:0036225 ! respiratory system gland +relationship: part_of UBERON:0002202 ! submucosa of trachea + +[Term] +id: UBERON:0005204 +name: larynx submucosa gland +def: "A gland that is part of a larynx submucosa [Automatically generated definition]." [OBOL:automatic] +subset: organ_slim +synonym: "laryngeal submucosa gland" RELATED [EMAPA:35475] +xref: EMAPA:35475 +xref: MA:0002729 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0036225 ! respiratory system gland +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0004778 ! larynx submucosa +relationship: part_of UBERON:0004778 ! larynx submucosa + +[Term] +id: UBERON:0005205 +name: lamina propria of vagina +synonym: "vagina stroma" RELATED [MA:0002737] +xref: EMAPA:35902 +xref: FMA:19979 +xref: MA:0002737 +is_a: UBERON:0000030 ! lamina propria +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0000030 ! lamina propria +intersection_of: part_of UBERON:0000996 ! vagina +relationship: part_of UBERON:0000996 ! vagina + +[Term] +id: UBERON:0005206 +name: choroid plexus stroma +def: "Stromal matrix surrounding blood vessels within the choroid plexus." [PMCID:PMC3496674] +synonym: "choroid plexus stromal matrix" EXACT [PMCID:PMC3496674] +xref: EMAPA:36609 +xref: MA:0000825 +is_a: UBERON:0003891 ! stroma +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0003891 ! stroma +intersection_of: part_of UBERON:0001886 ! choroid plexus +relationship: part_of UBERON:0001886 ! choroid plexus + +[Term] +id: UBERON:0005207 +name: tonsil capsule +def: "A capsule that is part of a tonsil [Automatically generated definition]." [OBOL:automatic] +xref: FMA:294647 +xref: MA:0000776 +is_a: UBERON:0003893 ! capsule +intersection_of: UBERON:0003893 ! capsule +intersection_of: part_of UBERON:0002372 ! tonsil +relationship: part_of UBERON:0002372 ! tonsil + +[Term] +id: UBERON:0005208 +name: right atrium valve +def: "A valve that is part of a right atrium [Automatically generated definition]." [OBOL:automatic] +synonym: "right atrium valves" RELATED PLURAL [EHDAA2:0000302] +synonym: "superior vena cava valve" RELATED [EMAPA:17327] +synonym: "valve of right atrium" EXACT [EMAPA:17327] +xref: EHDAA2:0000302 +xref: EMAPA:17327 +xref: MA:0001871 +is_a: UBERON:0003978 ! valve +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0003978 ! valve +intersection_of: part_of UBERON:0002078 ! right cardiac atrium +relationship: part_of UBERON:0002078 ! right cardiac atrium + +[Term] +id: UBERON:0005211 +name: renal medulla interstitium +def: "tissue surrounding the loop of Henle in the renal medulla." [http://en.wikipedia.org/wiki/Bone_marrow_of_ovaryry_interstitium] +synonym: "kidney medulla interstitium" EXACT [MA:0002619] +synonym: "medullary interstitium" NARROW [http://en.wikipedia.org/wiki/Medullary_interstitium] +synonym: "medullary stroma" RELATED [EMAPA:18326] +synonym: "renal medullary interstitial tissue" EXACT [] +synonym: "renal medullary interstitium" EXACT [EMAPA:18326] +xref: EMAPA:18326 +xref: http://en.wikipedia.org/wiki/Bone_marrow_of_ovaryry_interstitium +xref: http://www.snomedbrowser.com/Codes/Details/245693005 +xref: MA:0002619 +is_a: UBERON:0005215 ! kidney interstitium +intersection_of: UBERON:0005169 ! interstitial tissue +intersection_of: part_of UBERON:0000362 ! renal medulla +relationship: part_of UBERON:0000362 ! renal medulla + +[Term] +id: UBERON:0005212 +name: Leydig cell region of testis +def: "The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.." [MESH:A05.360.444.849] +subset: pheno_slim +synonym: "interstitium of testis" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "interstitium of the testis" EXACT [EMAPA:18687] +synonym: "testis - interstitial" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "testis interstitial tissue" EXACT [MA:0002713] +synonym: "testis interstitium" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: EMAPA:18687 +xref: http://www.snomedbrowser.com/Codes/Details/362280005 +xref: MA:0002713 +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0005169 ! interstitial tissue +relationship: contributes_to_morphology_of UBERON:0000473 ! testis +relationship: part_of UBERON:0000473 ! testis + +[Term] +id: UBERON:0005213 +name: outer renal medulla interstitium +def: "A portion of interstitial tissue that is part of a outer medulla of kidney [Automatically generated definition]." [OBOL:automatic] +synonym: "kidney outer medulla interstitium" EXACT [MA:0002621] +synonym: "outer medullary interstitium" EXACT [EMAPA:28337] +xref: EMAPA:28337 +xref: MA:0002621 +is_a: UBERON:0005211 ! renal medulla interstitium +intersection_of: UBERON:0005169 ! interstitial tissue +intersection_of: part_of UBERON:0001293 ! outer medulla of kidney +relationship: part_of UBERON:0001293 {source="MA"} ! outer medulla of kidney + +[Term] +id: UBERON:0005214 +name: inner renal medulla interstitium +def: "A portion of interstitial tissue that is part of a inner medulla of kidney [Automatically generated definition]." [OBOL:automatic] +synonym: "inner medullary interstitium" EXACT [EMAPA:28364] +synonym: "kidney inner medulla interstitium" EXACT [MA:0002620] +synonym: "papillary interstitium" RELATED [EMAPA:28364] +xref: EMAPA:28364 +xref: MA:0002620 +is_a: UBERON:0005211 ! renal medulla interstitium +intersection_of: UBERON:0005169 ! interstitial tissue +intersection_of: part_of UBERON:0001294 ! inner medulla of kidney +relationship: part_of UBERON:0001294 {source="MA"} ! inner medulla of kidney + +[Term] +id: UBERON:0005215 +name: kidney interstitium +def: "The interstitial compartment of the kidney, comprising the extravascular intertubular spaces of the renal parenchyma, with their attendant cellular elements and extracellular substances, bounded on all sides by epithelial and vascular basement membranes." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/18575881, https://doi.org/10.1038/ki.1991.49] +subset: pheno_slim +synonym: "interstitial tissue of kidney" EXACT [] +synonym: "kidney interstitium group" RELATED [EMAPA:28518] +synonym: "renal interstitial tissue" EXACT [] +synonym: "renal interstitium" EXACT [FMA:70983] +synonym: "renal stroma" EXACT [FMA:70983] +synonym: "stroma of kidney" EXACT [FMA:70983] +xref: EMAPA:28518 +xref: FMA:70983 +xref: http://www.snomedbrowser.com/Codes/Details/362210003 +xref: MA:0002616 +xref: NCIT:C33459 +is_a: UBERON:0005169 ! interstitial tissue +intersection_of: UBERON:0005169 ! interstitial tissue +intersection_of: part_of UBERON:0002113 ! kidney +relationship: contributes_to_morphology_of UBERON:0002113 ! kidney +relationship: part_of UBERON:0002113 ! kidney + +[Term] +id: UBERON:0005216 +name: optic eminence surface ectoderm +def: "An external ectoderm that is part of a optic eminence [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:16539 +xref: RETIRED_EHDAA2:0001311 +xref: VHOG:0000520 +is_a: UBERON:0000076 ! external ectoderm +intersection_of: UBERON:0000076 ! external ectoderm +intersection_of: part_of UBERON:0004348 ! optic eminence +relationship: part_of UBERON:0005234 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! optic eminence ectoderm + +[Term] +id: UBERON:0005217 +name: midbrain subarachnoid space +def: "A subarachnoid space that is part of a midbrain [Automatically generated definition]." [OBOL:automatic] +synonym: "subarachnoid space mesencephalon" RELATED [VHOG:0001304] +synonym: "subarachnoid space midbrain" EXACT [VHOG:0001304] +xref: EMAPA:19055 +xref: VHOG:0001304 +is_a: UBERON:0000315 ! subarachnoid space +intersection_of: UBERON:0000315 ! subarachnoid space +intersection_of: part_of UBERON:0001891 ! midbrain +relationship: part_of UBERON:0001891 ! midbrain + +[Term] +id: UBERON:0005218 +name: diencephalon subarachnoid space +def: "A subarachnoid space that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] +synonym: "subarachnoid space diencephalon" EXACT [VHOG:0001302] +xref: EMAPA:19053 +xref: VHOG:0001302 +is_a: UBERON:0000315 ! subarachnoid space +intersection_of: UBERON:0000315 ! subarachnoid space +intersection_of: part_of UBERON:0001894 ! diencephalon +relationship: part_of UBERON:0001894 ! diencephalon + +[Term] +id: UBERON:0005219 +name: hindbrain subarachnoid space +def: "A subarachnoid space that is part of a hindbrain [Automatically generated definition]." [OBOL:automatic] +synonym: "subarachnoid space hindbrain" EXACT [VHOG:0001303] +synonym: "subarachnoid space rhombencephalon" RELATED [VHOG:0001303] +xref: EMAPA:18211 +xref: VHOG:0001303 +is_a: UBERON:0000315 ! subarachnoid space +intersection_of: UBERON:0000315 ! subarachnoid space +intersection_of: part_of UBERON:0002028 ! hindbrain +relationship: part_of UBERON:0002028 ! hindbrain + +[Term] +id: UBERON:0005220 +name: pancreas head parenchyma +def: "A parenchyma that is part of a head of pancreas [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:17508 +xref: VHOG:0000838 +is_a: UBERON:0001978 ! parenchyma of pancreas +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000353 ! parenchyma +intersection_of: part_of UBERON:0001069 ! head of pancreas +relationship: part_of UBERON:0001069 ! head of pancreas + +[Term] +id: UBERON:0005221 +name: liver right lobe parenchyma +def: "A parenchyma that is part of a right lobe of liver [Automatically generated definition]." [OBOL:automatic] +synonym: "parenchyma of right lobe of liver" EXACT [FMA:71657] +xref: EHDAA2:0001010 +xref: EMAPA:18317 +xref: FMA:71657 +xref: VHOG:0000840 +is_a: UBERON:0001280 ! liver parenchyma +intersection_of: UBERON:0000353 ! parenchyma +intersection_of: part_of UBERON:0001114 ! right lobe of liver +relationship: part_of UBERON:0001114 ! right lobe of liver + +[Term] +id: UBERON:0005222 +name: liver left lobe parenchyma +def: "A parenchyma that is part of a left lobe of liver [Automatically generated definition]." [OBOL:automatic] +synonym: "parenchyma of left lobe of liver" EXACT [FMA:71658] +xref: EHDAA2:0001002 +xref: EMAPA:18310 +xref: FMA:71658 +xref: VHOG:0000839 +is_a: UBERON:0001280 ! liver parenchyma +intersection_of: UBERON:0000353 ! parenchyma +intersection_of: part_of UBERON:0001115 ! left lobe of liver +relationship: part_of UBERON:0001115 ! left lobe of liver + +[Term] +id: UBERON:0005223 +name: pancreas body parenchyma +def: "A parenchyma that is part of a body of pancreas [Automatically generated definition]." [OBOL:automatic] +xref: EHDAA2:0001370 +xref: EMAPA:17506 +xref: VHOG:0000837 +is_a: UBERON:0001978 ! parenchyma of pancreas +intersection_of: UBERON:0000353 ! parenchyma +intersection_of: part_of UBERON:0001150 ! body of pancreas +relationship: part_of UBERON:0001150 ! body of pancreas + +[Term] +id: UBERON:0005224 +name: pancreas tail parenchyma +def: "A parenchyma that is part of a tail of pancreas [Automatically generated definition]." [OBOL:automatic] +xref: EHDAA2:0001392 +xref: EMAPA:17513 +xref: VHOG:0000469 +is_a: UBERON:0001978 ! parenchyma of pancreas +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000353 ! parenchyma +intersection_of: part_of UBERON:0001151 ! tail of pancreas +relationship: part_of UBERON:0001151 ! tail of pancreas + +[Term] +id: UBERON:0005225 +name: upper leg epithelium +def: "An epithelium that is part of a hindlimb stylopod [Automatically generated definition]." [OBOL:automatic] +xref: EHDAA2:0002131 +xref: EMAPA:17500 +xref: VHOG:0001041 +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000376 ! hindlimb stylopod +relationship: develops_from UBERON:0003371 {source="EHDAA2"} ! pelvic appendage bud ectoderm +relationship: part_of UBERON:0000376 ! hindlimb stylopod + +[Term] +id: UBERON:0005226 +name: pedal digit epithelium +def: "An epithelium that is part of a toe [Automatically generated definition]." [OBOL:automatic] +synonym: "foot digit epithelium" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit epithelium" EXACT [OBOL:accepted] +synonym: "toe epithelium" EXACT [] +xref: EMAPA:32946 +xref: VHOG:0001031 +is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001466 ! pedal digit +relationship: develops_from UBERON:0003248 {source="EHDAA2"} ! epithelium of footplate +relationship: part_of UBERON:0001466 ! pedal digit + +[Term] +id: UBERON:0005227 +name: manual digit epithelium +def: "An epithelium that is part of a finger [Automatically generated definition]." [OBOL:automatic] +synonym: "finger epithelium" EXACT [] +synonym: "fore limb digit epithelium" EXACT [OBOL:accepted] +synonym: "hand digit epithelium" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +xref: EHDAA2:0000406 +xref: EMAPA:32647 +xref: VHOG:0001032 +is_a: UBERON:0000490 ! unilaminar epithelium +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002389 ! manual digit +relationship: develops_from UBERON:0010332 {source="EHDAA2"} ! epithelium of handplate +relationship: part_of UBERON:0002389 ! manual digit + +[Term] +id: UBERON:0005228 +name: upper arm epithelium +def: "An epithelium that is part of a forelimb stylopod [Automatically generated definition]." [OBOL:automatic] +xref: EHDAA2:0002113 +xref: EMAPA:17425 +xref: VHOG:0000990 +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0003822 ! forelimb stylopod +relationship: develops_from UBERON:0003372 {source="EHDAA2"} ! pectoral appendage bud ectoderm +relationship: part_of UBERON:0003822 ! forelimb stylopod + +[Term] +id: UBERON:0005229 +name: lower leg epithelium +def: "An epithelium that is part of a lower leg [Automatically generated definition]." [OBOL:automatic] +xref: EHDAA2:0001031 +xref: EMAPA:17497 +xref: VHOG:0001050 +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod +relationship: develops_from UBERON:0003371 {source="EHDAA2"} ! pelvic appendage bud ectoderm +relationship: part_of UBERON:0003823 ! hindlimb zeugopod + +[Term] +id: UBERON:0005230 +name: obsolete fundus epithelium +comment: obsoleted due to confusion between ocular fundus and other types of fundus +is_obsolete: true + +[Term] +id: UBERON:0005233 +name: medial-nasal process ectoderm +def: "An ectoderm that is part of a medial nasal prominence [Automatically generated definition]." [OBOL:automatic] +xref: EHDAA2:0001078 +xref: EMAPA:16809 +xref: FMA:312675 +xref: VHOG:0000803 +is_a: UBERON:0000924 ! ectoderm +is_a: UBERON:0014702 ! frontonasal process epithelium +intersection_of: UBERON:0000924 ! ectoderm +intersection_of: part_of UBERON:0004068 ! medial nasal prominence +relationship: part_of UBERON:0004068 ! medial nasal prominence + +[Term] +id: UBERON:0005234 +name: optic eminence ectoderm +def: "An ectoderm that is part of a optic eminence [Automatically generated definition]." [OBOL:automatic] +xref: EHDAA:940 +xref: EMAPA:16539 +xref: RETIRED_EHDAA2:0001309 +xref: VHOG:0001105 +is_a: UBERON:0000924 ! ectoderm +intersection_of: UBERON:0000924 ! ectoderm +intersection_of: part_of UBERON:0004348 ! optic eminence +relationship: part_of UBERON:0004348 ! optic eminence + +[Term] +id: UBERON:0005236 +name: osseus labyrinth vestibule +def: "A small, oval, bony chamber of the labyrinth. The vestibule contains the utricle and saccule, organs which are part of the balancing apparatus of the ear." [BTO:0003382, http://en.wikipedia.org/wiki/Vestibule_of_the_ear] +subset: pheno_slim +synonym: "bony labyrinth vestibule" EXACT [] +synonym: "inner ear vestibule" RELATED [BTO:0003382] +synonym: "inner ear vestibulum" EXACT [BTO:0003382] +synonym: "osseous labyrinth vestibule" EXACT [OBOL:automatic] +synonym: "vestibular apparatus" RELATED [GAID:881] +synonym: "vestibular part of bony labyrinth" RELATED [FMA:60183] +synonym: "vestibule" BROAD [MP:0000034, XAO:0000199] +synonym: "vestibule of bony labyrinth" EXACT [FMA:60183] +synonym: "vestibulum auris" RELATED LATIN [http://en.wikipedia.org/wiki/Vestibule_of_the_ear] +synonym: "vestibulum labyrinthi" RELATED LATIN [http://en.wikipedia.org/wiki/Vestibule_of_the_ear] +xref: BTO:0003382 +xref: CALOHA:TS-0479 +xref: EV:0100366 +xref: FMA:60183 +xref: GAID:881 +xref: http://en.wikipedia.org/wiki/Vestibule_of_the_ear +xref: http://linkedlifedata.com/resource/umls/id/C0458718 +xref: http://www.snomedbrowser.com/Codes/Details/181188003 +xref: MA:0001185 +xref: MESH:D014722 +xref: NCIT:C33873 +xref: UMLS:C0458718 {source="ncithesaurus:Vestibule"} +xref: VHOG:0001220 +xref: XAO:0000199 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0001846 ! internal ear +relationship: part_of UBERON:0001839 ! bony labyrinth + +[Term] +id: UBERON:0005239 +name: basal plate metencephalon +synonym: "metencephalon basal plate" EXACT [EHDAA2:0001154] +xref: EHDAA2:0001154 +xref: EMAPA:17078 +xref: VHOG:0000320 +is_a: UBERON:0004064 ! neural tube basal plate + +[Term] +id: UBERON:0005240 +name: basal plate medulla oblongata +synonym: "medulla oblongata basal plate" EXACT [EHDAA2:0001093] +xref: EHDAA2:0001093 +xref: EMAPA:17557 +xref: VHOG:0000324 +is_a: UBERON:0004064 ! neural tube basal plate + +[Term] +id: UBERON:0005241 +name: obsolete apical ectodermal ridge forelimb +def: "A forelimb that is part of an apical ectodermal ridge [Automatically generated definition]." [OBOL:automatic] +is_obsolete: true +consider: VHOG:0001064 + +[Term] +id: UBERON:0005242 +name: obsolete apical ectodermal ridge hindlimb +def: "A hindlimb that is part of an apical ectodermal ridge [Automatically generated definition]." [OBOL:automatic] +is_obsolete: true +consider: VHOG:0001066 + +[Term] +id: UBERON:0005243 +name: interventricular septum endocardium +def: "An endocardium that is part of a interventricular septum [Automatically generated definition]." [OBOL:automatic] +synonym: "endocardium of interventricular septum" EXACT [FMA:83584] +synonym: "interventricular septum endocardial tissue" RELATED [VHOG:0000615] +xref: EHDAA2:0000886 +xref: EHDAA2:0000887 +xref: FMA:83584 +xref: VHOG:0000615 +is_a: UBERON:0002165 ! endocardium +intersection_of: UBERON:0002165 ! endocardium +intersection_of: part_of UBERON:0002094 ! interventricular septum +relationship: part_of UBERON:0002094 ! interventricular septum + +[Term] +id: UBERON:0005244 +name: lobar bronchus of right lung cranial lobe +alt_id: UBERON:0012060 +def: "." [http://en.wikipedia.org/wiki/Eparterial_bronchus] +synonym: "eparterial bronchus" RELATED [http://en.wikipedia.org/wiki/Eparterial_bronchus] +synonym: "lobar bronchus of cranial lobe" BROAD [EMAPA:17992] +synonym: "right lung cranial lobe lobar bronchus" EXACT [EHDAA2:0001752] +synonym: "right superior lobar bronchus" EXACT [FMA:7397] +synonym: "right upper lobar bronchus" EXACT [FMA:7397] +synonym: "right upper lobe bronchus" EXACT [FMA:7397] +xref: EHDAA2:0001752 +xref: EMAPA:17992 +xref: Eparterial:bronchus +xref: FMA:7397 +xref: http://www.snomedbrowser.com/Codes/Details/181806003 +xref: http://www.snomedbrowser.com/Codes/Details/361956001 +xref: VHOG:0000240 +is_a: UBERON:0003404 ! lobar bronchus of right lung +intersection_of: UBERON:0002183 ! lobar bronchus +intersection_of: part_of UBERON:0002170 ! upper lobe of right lung +relationship: part_of UBERON:0002170 ! upper lobe of right lung + +[Term] +id: UBERON:0005245 +name: lobar bronchus of right lung caudal lobe +def: "A lobar bronchus that is part of a lower lobe of right lung [Automatically generated definition]." [OBOL:automatic] +synonym: "lobar bronchus of caudal lobe" EXACT [EMAPA:17987] +xref: EHDAA2:0001744 +xref: EMAPA:17987 +xref: VHOG:0000250 +is_a: UBERON:0003404 ! lobar bronchus of right lung +intersection_of: UBERON:0002183 ! lobar bronchus +intersection_of: part_of UBERON:0002171 ! lower lobe of right lung +relationship: part_of UBERON:0002171 ! lower lobe of right lung + +[Term] +id: UBERON:0005248 +name: bulbus cordis myocardium +def: "A myocardium that is part of a bulbus cordis [Automatically generated definition]." [OBOL:automatic] +synonym: "bulbus cordis cardiac muscle" RELATED [VHOG:0000609] +xref: EMAPA:36488 +xref: VHOG:0000609 +is_a: UBERON:0002349 ! myocardium +intersection_of: UBERON:0002349 ! myocardium +intersection_of: part_of UBERON:0004706 ! bulbus cordis +relationship: part_of UBERON:0004706 ! bulbus cordis + +[Term] +id: UBERON:0005249 +name: metanephric renal pelvis +def: "A renal pelvis that is part of a metanephros." [OBOL:automatic] +synonym: "metanephros pelvis" EXACT [VHOG:0000945] +xref: VHOG:0000945 +is_a: UBERON:0001224 ! renal pelvis +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001224 ! renal pelvis +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0000081 ! metanephros + +[Term] +id: UBERON:0005250 +name: stomatodeum gland +def: "A gland that is part of a stomodeum." [OBOL:automatic] +subset: organ_slim +synonym: "stomatodaeum gland" EXACT [VHOG:0000658] +xref: VHOG:0000658 +is_a: UBERON:0002530 ! gland +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0000930 ! stomodeum +relationship: part_of UBERON:0000930 ! stomodeum + +[Term] +id: UBERON:0005251 +name: yolk sac cavity +def: "An anatomical cavity that is part of a yolk sac [Automatically generated definition]." [OBOL:automatic] +synonym: "cavity of yolk sac" EXACT [FMA:63942] +synonym: "yolk sac lumen" EXACT [] +synonym: "yolk sac space" RELATED [FMA:63942] +xref: EMAPA:16055 +xref: FMA:63942 +xref: VHOG:0000843 +is_a: UBERON:0002553 ! anatomical cavity +is_a: UBERON:0007473 ! lumen of epithelial sac +is_a: UBERON:0012466 ! extraembryonic cavity +intersection_of: UBERON:0002553 ! anatomical cavity +intersection_of: luminal_space_of UBERON:0001040 ! yolk sac +relationship: luminal_space_of UBERON:0001040 ! yolk sac +relationship: part_of UBERON:0001040 ! yolk sac + +[Term] +id: UBERON:0005252 +name: lesser sac cavity +def: "An anatomical cavity that is part of a lesser sac [Automatically generated definition]." [OBOL:automatic] +synonym: "cavity of lesser sac" EXACT [FMA:9702] +synonym: "cavity of omental bursa" EXACT [FMA:9702] +synonym: "cavity of omental bursa viewed anatomically" EXACT [FMA:9702] +synonym: "lesser peritoneal sac" EXACT [FMA:9702] +synonym: "lesser sac cavity" EXACT [FMA:9702] +synonym: "omental bursa cavity" EXACT [EMAPA:18461] +xref: EHDAA2:0004558 +xref: EMAPA:18461 +xref: FMA:9702 +xref: VHOG:0000827 +is_a: UBERON:0002553 ! anatomical cavity +intersection_of: UBERON:0002553 ! anatomical cavity +intersection_of: luminal_space_of UBERON:0001341 ! lesser sac +relationship: develops_from UBERON:0005450 {source="EHDAA2"} ! greater sac cavity +relationship: luminal_space_of UBERON:0001341 ! lesser sac +relationship: part_of UBERON:0001341 ! lesser sac + +[Term] +id: UBERON:0005253 +name: head mesenchyme +def: "Portion of primordial embryonic connective tissue of the developing head, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to head connective tissue, bone and musculature in conjunction with cranial neural crest cells." [ISBN:0683400088, MP:0011260] +subset: efo_slim +subset: pheno_slim +subset: vertebrate_core +synonym: "cephalic mesenchyme" EXACT [MP:0011260] +synonym: "cranial mesenchyme" RELATED [MGI:anna] +synonym: "desmocranium" RELATED PENDING_REVIEW [FMA:76622] +xref: EFO:0003492 +xref: EHDAA2:0000732 +xref: EHDAA:179 +xref: EMAPA:16098 +xref: EMAPA_RETIRED:16269 +xref: FMA:76622 +xref: TAO:0000113 +xref: VHOG:0000332 +xref: ZFA:0000113 +is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0005291 ! embryonic tissue +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0000033 ! head +relationship: part_of UBERON:0000033 ! head +relationship: part_of UBERON:0009142 {source="EHDAA2"} ! entire embryonic mesenchyme + +[Term] +id: UBERON:0005254 +name: upper leg mesenchyme +def: "Mesenchyme that is part of a developing hindlimb stylopod [Automatically generated definition]." [OBOL:automatic] +xref: EHDAA2:0002132 +xref: EMAPA:17501 +xref: VHOG:0000506 +is_a: UBERON:0003860 ! hindlimb mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0000376 ! hindlimb stylopod +relationship: part_of UBERON:0000376 ! hindlimb stylopod + +[Term] +id: UBERON:0005255 +name: pedal digit mesenchyme +def: "Mesenchyme that is part of a developing toe [Automatically generated definition]." [OBOL:automatic] +synonym: "finger ray mesenchyme" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "foot digit mesenchyme" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit mesenchyme" EXACT [OBOL:accepted] +synonym: "pedal digital ray mesenchyme" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "toe mesenchyme" EXACT [] +xref: EMAPA:32947 +xref: VHOG:0000463 +is_a: UBERON:0003860 ! hindlimb mesenchyme +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010702 ! digit mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001466 ! pedal digit +relationship: develops_from UBERON:0003328 {source="EHDAA2"} ! mesenchyme of footplate +relationship: part_of UBERON:0001466 ! pedal digit + +[Term] +id: UBERON:0005256 +name: trunk mesenchyme +def: "Mesenchyme that is part of a developing trunk." [OBOL:automatic] +subset: efo_slim +subset: vertebrate_core +synonym: "trunk and cervical mesenchyme" RELATED [EHDAA2:0002092] +xref: EFO:0003485 +xref: EHDAA2:0002092 +xref: EHDAA:377 +xref: EMAPA:16177 +xref: TAO:0000081 +xref: VHOG:0000281 +xref: ZFA:0000081 +is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0005291 ! embryonic tissue +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0000922 ! embryo +intersection_of: part_of UBERON:0002100 ! trunk +relationship: part_of UBERON:0002100 ! trunk +relationship: part_of UBERON:0009142 {source="EHDAA2"} ! entire embryonic mesenchyme + +[Term] +id: UBERON:0005257 +name: manual digit mesenchyme +def: "Mesenchyme that is part of a developing finger [Automatically generated definition]." [OBOL:automatic] +synonym: "anterior limb digital ray mesenchyme" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "finger mesenchyme" EXACT [] +synonym: "finger ray mesenchyme" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "fore limb digit mesenchyme" EXACT [OBOL:accepted] +synonym: "hand digit mesenchyme" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digital ray mesenchyme" RELATED [https://orcid.org/0000-0002-6601-2165] +xref: EHDAA2:0000407 +xref: EMAPA:32645 +xref: VHOG:0001416 +is_a: UBERON:0003859 ! forelimb mesenchyme +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010702 ! digit mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0002389 ! manual digit +relationship: develops_from UBERON:0009523 ! mesenchyme of handplate +relationship: part_of UBERON:0002389 ! manual digit + +[Term] +id: UBERON:0005258 +name: upper arm mesenchyme +def: "Mesenchyme that is part of a developing forelimb stylopod [Automatically generated definition]." [OBOL:automatic] +xref: EHDAA2:0002114 +xref: EMAPA:17426 +xref: VHOG:0000505 +is_a: UBERON:0003859 ! forelimb mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0003822 ! forelimb stylopod +relationship: part_of UBERON:0003822 ! forelimb stylopod + +[Term] +id: UBERON:0005259 +name: lower leg mesenchyme +def: "Mesenchyme that is part of a developing lower leg [Automatically generated definition]." [OBOL:automatic] +xref: EHDAA2:0001032 +xref: EMAPA:17498 +xref: VHOG:0000752 +is_a: UBERON:0003860 ! hindlimb mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod +relationship: part_of UBERON:0003823 ! hindlimb zeugopod + +[Term] +id: UBERON:0005261 +name: atrium cardiac jelly +def: "A cardiac jelly that is part of an atrium [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:16343 +xref: EMAPA:16814 +xref: EMAPA:16821 +xref: VHOG:0000941 +is_a: UBERON:0003906 ! cardiac jelly +intersection_of: UBERON:0003906 ! cardiac jelly +intersection_of: part_of UBERON:0002081 ! cardiac atrium +relationship: part_of UBERON:0002081 ! cardiac atrium + +[Term] +id: UBERON:0005262 +name: ventricle cardiac jelly +def: "A cardiac jelly that is part of a ventricle [Automatically generated definition]." [OBOL:automatic] +xref: VHOG:0000943 +is_a: UBERON:0003906 ! cardiac jelly +intersection_of: UBERON:0003906 ! cardiac jelly +intersection_of: part_of UBERON:0002082 ! cardiac ventricle +relationship: part_of UBERON:0002082 ! cardiac ventricle + +[Term] +id: UBERON:0005263 +name: outflow tract cardiac jelly +def: "A cardiac jelly that is part of a outflow tract [Automatically generated definition]." [OBOL:automatic] +xref: EHDAA2:0001354 +xref: EMAPA:16347 +xref: VHOG:0000940 +is_a: UBERON:0003906 ! cardiac jelly +intersection_of: UBERON:0003906 ! cardiac jelly +intersection_of: part_of UBERON:0004145 ! outflow tract +relationship: part_of UBERON:0004145 ! outflow tract + +[Term] +id: UBERON:0005264 +name: obsolete midbrain neural fold +is_obsolete: true +consider: VHOG:0000793 + +[Term] +id: UBERON:0005265 +name: obsolete hindbrain neural fold +is_obsolete: true +consider: VHOG:0001211 + +[Term] +id: UBERON:0005266 +name: obsolete spinal cord neural fold +is_obsolete: true +consider: VHOG:0000628 + +[Term] +id: UBERON:0005268 +name: renal cortex artery +def: "An artery that supplies the renal cortex." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "kidney cortex artery" EXACT [MP:0011314] +synonym: "renal cortex arterial system" RELATED [MA:0002582] +synonym: "renal cortex artery" EXACT [MA:0002582] +xref: EMAPA:28147 +xref: MA:0002582 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003644 ! kidney arterial blood vessel +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0001225 ! cortex of kidney +relationship: contributes_to_morphology_of UBERON:0001225 ! cortex of kidney +relationship: part_of UBERON:0001225 {source="MA"} ! cortex of kidney +relationship: supplies UBERON:0001225 ! cortex of kidney + +[Term] +id: UBERON:0005269 +name: renal cortex vein +def: "Artery that receives blood from the renal cortex[MP, modified]" [MGI:csmith] +subset: pheno_slim +synonym: "kidney cortex vein" RELATED [MP:0011322] +synonym: "renal cortex venous system" RELATED [MA:0002592] +xref: EMAPA:28152 +xref: MA:0002592 +is_a: UBERON:0013126 ! vein of abdomen +is_a: UBERON:0014401 ! renal venous blood vessel +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0001225 ! cortex of kidney +relationship: contributes_to_morphology_of UBERON:0001225 ! cortex of kidney +relationship: drains UBERON:0001225 ! cortex of kidney +relationship: part_of UBERON:0001225 {source="MA"} ! cortex of kidney + +[Term] +id: UBERON:0005270 +name: renal cortex interstitium +def: "A compartment of the renal cortex situated between basement membranes of epithelia and vessels that contains two contiguous cellular networks in mutual contact, one formed by interstitial fibroblasts, the other by dendritic cells." [http://www.ncbi.nlm.nih.gov/pubmed/18575881] +synonym: "cortical stroma" RELATED [EMAPA:28136] +synonym: "kidney cortex interstitium" EXACT [MA:0002608] +synonym: "renal cortical interstitial tissue" EXACT [] +xref: EMAPA:28136 +xref: http://www.snomedbrowser.com/Codes/Details/243707006 +xref: MA:0002608 +xref: Medullary:interstitium +is_a: UBERON:0005215 ! kidney interstitium +intersection_of: UBERON:0005169 ! interstitial tissue +intersection_of: part_of UBERON:0001225 ! cortex of kidney +relationship: part_of UBERON:0001225 {source="MA"} ! cortex of kidney + +[Term] +id: UBERON:0005271 +name: juxtamedullary cortex +def: "The part of the renal cortex nearest to the medulla." [http://medical-dictionary.thefreedictionary.com/juxtamedullary+cortex] +synonym: "inner cortex of kidney" EXACT [FMA:74288] +synonym: "inner renal cortex" EXACT [KUPO:0001008] +synonym: "juxtamedullary cortex of kidney" EXACT [FMA:74288] +xref: EMAPA:37623 {source="MA:th"} +xref: FMA:74288 +xref: KUPO:0001008 +xref: MA:0001648 +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0001225 {source="FMA", source="KUPO"} ! cortex of kidney + +[Term] +id: UBERON:0005272 +name: peritubular capillary +def: "the tiny blood vessels that receive blood from the efferent arterioles of the glomerulus, and interact with superficial cortical nephrons allowing reabsorption and secretion between blood and the inner lumen of the nephron; peritubular capillaries are situated around the tubule and are at low pressure" [MGI:csmith, MP:0011321] +subset: pheno_slim +xref: EMAPA:36558 +xref: MA:0002588 +xref: Peritubular:capillaries +is_a: UBERON:0003527 ! kidney capillary + +[Term] +id: UBERON:0005273 +name: nail bed +def: "Region of skin beneath the nail plate[WP]." [UBERON:gvg] +subset: pheno_slim +synonym: "nailbed" EXACT [] +xref: EMAPA:35581 +xref: EV:0100158 +xref: http://www.snomedbrowser.com/Codes/Details/181578005 +xref: MA:0002706 +xref: VHOG:0001362 +is_a: UBERON:0005275 ! dorsal skin of digit +relationship: adjacent_to UBERON:0008198 ! nail plate +relationship: contributes_to_morphology_of UBERON:0001705 ! nail +relationship: part_of UBERON:0004105 ! subungual region + +[Term] +id: UBERON:0005274 +name: proximal nail bed +xref: EMAPA:37509 {source="MA:th"} +xref: MA:0002709 +is_a: UBERON:0005275 ! dorsal skin of digit +relationship: part_of UBERON:0001705 {source="MA"} ! nail + +[Term] +id: UBERON:0005275 +name: dorsal skin of digit +synonym: "dorsal digit skin" EXACT [] +synonym: "skin of dorsal part of digit" EXACT [] +is_a: UBERON:0015249 ! digit skin + +[Term] +id: UBERON:0005276 +name: dorsal skin of finger +def: "A dorsal skin of digit that is part of a manual digit." [OBOL:automatic] +synonym: "dorsal finger skin" EXACT [] +synonym: "skin of dorsal part of finger" EXACT [FMA:38320] +synonym: "subdivision of skin of dorsal part of finger" EXACT [FMA:60346] +xref: FMA:38320 +xref: FMA:60346 +is_a: UBERON:0003533 ! manual digit skin +is_a: UBERON:0005275 ! dorsal skin of digit +intersection_of: UBERON:0005275 ! dorsal skin of digit +intersection_of: part_of UBERON:0002389 ! manual digit + +[Term] +id: UBERON:0005277 +name: dorsal skin of toe +def: "A dorsal skin of digit that is part of a pedal digit." [OBOL:automatic] +synonym: "dorsal toe skin" EXACT [] +synonym: "skin of dorsal part of toe" EXACT [FMA:37868] +synonym: "subdivision of skin of dorsal part of toe" EXACT [FMA:60523] +xref: FMA:37868 +xref: FMA:60523 +is_a: UBERON:0003530 ! pedal digit skin +is_a: UBERON:0005275 ! dorsal skin of digit +intersection_of: UBERON:0005275 ! dorsal skin of digit +intersection_of: part_of UBERON:0001466 ! pedal digit + +[Term] +id: UBERON:0005278 +name: nail bed of finger +def: "A nail bed that is part of a manual digit." [OBOL:automatic] +synonym: "nail bed of finger" EXACT [FMA:60348] +xref: FMA:60348 +xref: http://www.snomedbrowser.com/Codes/Details/244199003 +is_a: UBERON:0005273 ! nail bed +is_a: UBERON:0005276 ! dorsal skin of finger +intersection_of: UBERON:0005273 ! nail bed +intersection_of: part_of UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0005279 +name: nail bed of toe +def: "A nail bed that is part of a pedal digit." [OBOL:automatic] +synonym: "nail bed of toe" EXACT [FMA:60529] +xref: FMA:60529 +xref: http://www.snomedbrowser.com/Codes/Details/244200000 +is_a: UBERON:0005273 ! nail bed +is_a: UBERON:0005277 ! dorsal skin of toe +intersection_of: UBERON:0005273 ! nail bed +intersection_of: part_of UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0005280 +name: obsolete head mesoderm +synonym: "cranial mesoderm" RELATED [] +is_obsolete: true +replaced_by: UBERON:0006904 + +[Term] +id: UBERON:0005281 +name: ventricular system of central nervous system +def: "A set of structures containing cerebrospinal fluid in the brain. It is continuous with the central canal of the spinal cord[WP]." [http://en.wikipedia.org/wiki/Ventricular_system] +subset: efo_slim +subset: vertebrate_core +synonym: "CNS ventricular system" EXACT [EHDAA2:0004362] +synonym: "ventricle system" RELATED [http://en.wikipedia.org/wiki/Ventricular_system] +synonym: "ventricular system" EXACT [ZFA:0001261] +synonym: "ventricular system of neuraxis" EXACT [FMA:242675] +synonym: "ventriculi cerebri" RELATED LATIN [http://en.wikipedia.org/wiki/Ventricular_system] +xref: EFO:0003650 +xref: EHDAA2:0004362 +xref: EV:0100306 +xref: FMA:242675 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2497 +xref: MBA:73 +xref: TAO:0001261 +xref: Ventricular:system +xref: ZFA:0001261 +is_a: UBERON:0000467 {source="ZFA"} ! anatomical system +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001017 ! central nervous system + +[Term] +id: UBERON:0005282 +name: ventricular system of brain +synonym: "brain ventricular system" EXACT [VHOG:0000005] +xref: CALOHA:TS-1295 +xref: EMAPA:37447 {source="MA:th"} +xref: FMA:242787 +xref: VHOG:0000005 +is_a: UBERON:0000467 ! anatomical system +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0000955 ! brain +relationship: part_of UBERON:0005281 ! ventricular system of central nervous system + +[Term] +id: UBERON:0005283 +name: tela choroidea +def: "A structure found in the walls of the ventricles of the brain, consisting of part of the meninges (pia mater in mammals) plus ependyma[cjm]." [http://en.wikipedia.org/wiki/Tela_chorioidea, http://isc.temple.edu/neuroanatomy/lab/embryo_new/choroid/, ISBN:0471888893] +subset: pheno_slim +subset: vertebrate_core +synonym: "tela chorioidea" RELATED [FMA:242849] +xref: FMA:242849 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1378 +xref: TAO:0000447 +xref: Tela:chorioidea +xref: ZFA:0000447 +is_a: UBERON:0004923 ! organ component layer +relationship: part_of UBERON:0005358 {source="FMA"} ! ventricle of nervous system + +[Term] +id: UBERON:0005286 +name: tela choroidea of midbrain cerebral aqueduct +def: "Tela choroidea that lines the tectal ventricle." [ZFIN:curator] +synonym: "tela chorioidea tectal ventricle" EXACT [ZFA:0005157] +synonym: "tela choroidea of cerebral aqueduct" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "tela choroidea tectal ventricle" EXACT [ZFA:0005157] +xref: TAO:0005157 +xref: ZFA:0005157 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005283 ! tela choroidea +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0005283 ! tela choroidea +intersection_of: part_of UBERON:0002289 ! midbrain cerebral aqueduct +relationship: part_of UBERON:0002289 ! midbrain cerebral aqueduct + +[Term] +id: UBERON:0005287 +name: tela choroidea of fourth ventricle +def: "Tela chorioidea that lines the fourth ventricle[ZFA]. The tela chorioidea of the fourth ventricle is the name applied to the triangular fold of pia mater which is carried upward between the cerebellum and the medulla oblongata. It consists of two layers, which are continuous with each other in front, and are more or less adherent throughout: The posterior layer covers the antero-inferior surface of the cerebellum. The anterior layer is applied to the structures which form the lower part of the roof of the ventricle, and is continuous inferiorly with the pia mater on the inferior peduncles and closed part of the medulla[WP]." [http://en.wikipedia.org/wiki/Tela_chorioidea_of_fourth_ventricle, ZFIN:curator] +subset: vertebrate_core +synonym: "choroid membrane" EXACT [FMA:78493] +synonym: "choroid membrane of fourth ventricle" EXACT [FMA:78493] +synonym: "tela chorioidea fourth ventricle" EXACT [] +synonym: "tela choroidea" BROAD [FMA:78493, FMA:TA] +synonym: "tela choroidea fourth ventricle" EXACT [] +synonym: "tela choroidea of fourth ventricle" EXACT [] +synonym: "tela choroidea ventriculi quarti" EXACT LATIN [FMA:78493, FMA:TA] +synonym: "tela choroidea ventriculi quarti" RELATED LATIN [http://en.wikipedia.org/wiki/Tela_chorioidea_of_fourth_ventricle] +xref: BAMS:tc4v +xref: FMA:78493 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=639 +xref: http://en.wikipedia.org/wiki/Tela_chorioidea_of_fourth_ventricle +xref: http://www.snomedbrowser.com/Codes/Details/362321009 +xref: TAO:0005158 +xref: ZFA:0005158 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005283 ! tela choroidea +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0005283 ! tela choroidea +intersection_of: part_of UBERON:0002422 ! fourth ventricle +relationship: part_of UBERON:0002422 ! fourth ventricle + +[Term] +id: UBERON:0005288 +name: tela choroidea of third ventricle +def: "Tela chorioidea that lines the third ventricle[ZFA]. The part of the choroid plexus in relation to the body of the ventricle forms the vascular fringed margin of a triangular process of pia mater, named the tela chorioidea of the third ventricle, and projects from under cover of the lateral edge of the fornix. Blood is supplied by branches from the superior cerebellar artery[WP]." [http://en.wikipedia.org/wiki/Tela_chorioidea_of_third_ventricle, ZFIN:curator] +subset: vertebrate_core +synonym: "choroid membrane of third ventricle" EXACT [FMA:78463] +synonym: "tela chorioidea of third ventricle" EXACT [] +synonym: "tela chorioidea third ventricle" EXACT [ZFA:0005159] +synonym: "tela choroidea third ventricle" EXACT [] +synonym: "tela choroidea ventriculi tertii" EXACT LATIN [FMA:78463, FMA:TA] +synonym: "tela choroidea ventriculi tertii" RELATED LATIN [http://en.wikipedia.org/wiki/Tela_chorioidea_of_third_ventricle] +xref: BAMS:tc3v +xref: FMA:78463 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=453 +xref: http://en.wikipedia.org/wiki/Tela_chorioidea_of_third_ventricle +xref: http://www.snomedbrowser.com/Codes/Details/362320005 +xref: TAO:0005159 +xref: ZFA:0005159 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005283 ! tela choroidea +intersection_of: UBERON:0005283 ! tela choroidea +intersection_of: part_of UBERON:0002286 ! third ventricle +relationship: part_of UBERON:0002286 ! third ventricle + +[Term] +id: UBERON:0005289 +name: tela choroidea of telencephalic ventricle +def: "Tela chorioidea that lines the telencephalic ventricle." [ZFIN:curator] +subset: vertebrate_core +synonym: "tela chorioidea of lateral ventricle" EXACT [] +synonym: "tela chorioidea of telencephalic ventricle" EXACT [] +synonym: "tela chorioidea telencephalic ventricle" EXACT [ZFA:0005160] +synonym: "tela choroidea (ventriculi lateralis)" EXACT LATIN [FMA:83712, FMA:TA] +synonym: "tela choroidea of lateral ventricle" EXACT [FMA:83712] +synonym: "tela choroidea telencephalic ventricle" EXACT [] +xref: BAMS:tclv +xref: FMA:83712 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=219 +xref: http://www.snomedbrowser.com/Codes/Details/362319004 +xref: TAO:0005160 +xref: ZFA:0005160 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005283 ! tela choroidea +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0005283 ! tela choroidea +intersection_of: part_of UBERON:0002285 ! telencephalic ventricle +relationship: part_of UBERON:0002285 ! telencephalic ventricle + +[Term] +id: UBERON:0005290 +name: myelencephalon +def: "The posterior part of the developing vertebrate hindbrain or the corresponding part of the adult brain composed of the medulla oblongata and a portion of the fourth ventricle; as well as the glossopharyngeal nerve (CN IX), vagus nerve (CN X), accessory nerve (CN XI), hypoglossal nerve (CN XII), and a portion of the vestibulocochlear nerve (CN VIII).[BTO,WP]." [BTO:0000758, http://en.wikipedia.org/wiki/Myelencephalon] +subset: uberon_slim +synonym: "myelencephalon (medulla oblongata)" RELATED [DHBA:10662] +xref: BTO:0000758 +xref: CALOHA:TS-0607 +xref: CALOHA:TS-2365 +xref: DHBA:10662 +xref: EHDAA2:0001207 +xref: EHDAA:5526 +xref: EMAPA:17082 +xref: HBA:9512 +xref: http://en.wikipedia.org/wiki/Myelencephalon +xref: MA:0000205 +xref: VHOG:0000456 +is_a: UBERON:0004733 ! segmental subdivision of hindbrain +relationship: develops_from UBERON:0010096 ! future myelencephalon +relationship: dubious_for_taxon NCBITaxon:7955 +relationship: immediate_transformation_of UBERON:0010096 {evidence="definitional"} ! future myelencephalon + +[Term] +id: UBERON:0005291 +name: embryonic tissue +def: "A portion of tissue that is part of an embryo." [OBOL:automatic] +subset: pheno_slim +subset: upper_level +synonym: "developing tissue" RELATED [] +synonym: "portion of embryonic tissue" EXACT [OBOL:automatic] +xref: CALOHA:TS-2100 +is_a: UBERON:0000479 ! tissue +intersection_of: UBERON:0000479 ! tissue +intersection_of: part_of UBERON:0000922 ! embryo +relationship: part_of UBERON:0002050 ! embryonic structure + +[Term] +id: UBERON:0005292 +name: extraembryonic tissue +def: "Portion of tissue that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo." [https://orcid.org/0000-0002-6601-2165] +subset: efo_slim +synonym: "extra-embryonic tissue" EXACT [] +xref: BTO:0003360 +xref: CALOHA:TS-2119 +xref: EFO:0001406 +xref: MAT:0000061 +xref: MIAA:0000061 +is_a: UBERON:0000479 ! tissue +intersection_of: UBERON:0000479 ! tissue +intersection_of: part_of UBERON:0016887 ! entire extraembryonic component +relationship: part_of UBERON:0016887 ! entire extraembryonic component + +[Term] +id: UBERON:0005293 +name: cerebellum lobe +def: "A major subdivision of the cerebellum: anterior, posterior and flocculonodular" [http://en.wikipedia.org/wiki/Anatomy_of_the_cerebellum#Gross_anatomical_divisions] +synonym: "cerebellar lobe" EXACT [FMA:242392] +synonym: "cerebellar lobes" RELATED [BAMS:CBl] +synonym: "lobe of cerebellum" EXACT [FMA:242392] +synonym: "lobe parts of the cerebellar cortex" EXACT [BIRNLEX:1076] +xref: BAMS:CBl +xref: BIRNLEX:1076 +xref: EMAPA:35220 +xref: FMA:242392 +xref: http://www.snomedbrowser.com/Codes/Details/263971006 +xref: MA:0002963 +is_a: UBERON:0002749 ! regional part of cerebellar cortex + +[Term] +id: UBERON:0005294 +name: gonadal ridge +def: "the elevation of thickened mesothelium and underlying mesenchyme found on the ventromedial border of the embryonic mesonephros in which the primordial germ cells become embedded, establishing it as the primordium of the testis or ovary" [MGI:anna, MP:0011411] +subset: efo_slim +subset: pheno_slim +synonym: "crista gonadalis" RELATED LATIN [http://en.wikipedia.org/wiki/Gonadal_ridge] +synonym: "genital cord" RELATED [MP:0011411] +synonym: "genital ridge" EXACT [http://en.wikipedia.org/wiki/Gonadal_ridge, MP:0011411] +synonym: "gonadal ridge" EXACT [http://en.wikipedia.org/wiki/Gonadal_ridge] +synonym: "indifferent gonadal ridge" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: AAO:0011047 +xref: BTO:0001402 +xref: EFO:0001414 +xref: EHDAA2:0004044 +xref: EMAPA:35899 +xref: FMA:321917 +xref: Gonadal:ridge +xref: http://linkedlifedata.com/resource/umls/id/C0231047 +xref: http://linkedlifedata.com/resource/umls/id/C1512243 +xref: http://www.snomedbrowser.com/Codes/Details/308801004 +xref: http://www.snomedbrowser.com/Codes/Details/361399001 +xref: NCIT:C34184 +xref: NCIT:C34321 +xref: UMLS:C0231047 {source="ncithesaurus:Urogenital_Ridge"} +xref: UMLS:C1512243 {source="ncithesaurus:Gonadal_Ridge"} +xref: XAO:0000018 +is_a: UBERON:0002050 ! embryonic structure +relationship: develops_from UBERON:0004876 ! urogenital fold +relationship: part_of UBERON:0004122 ! genitourinary system + +[Term] +id: UBERON:0005295 +name: sex cord +def: "Cordlike masses of epithelial tissue that invaginate from germinal epithelium of the gonad and give rise to seminiferous tubules and rete testes in the male, and primary ovarian follicles and rete ovarii in the female." [http://en.wikipedia.org/wiki/Sex_cords, http://www.answers.com/topic/sex-cord] +synonym: "genital cord" RELATED [] +synonym: "gonad cord" RELATED [] +synonym: "gonadal cord" RELATED [] +synonym: "primitive sex cord" RELATED [] +xref: EHDAA2:0004051 +xref: http://linkedlifedata.com/resource/umls/id/C1512242 +xref: http://www.snomedbrowser.com/Codes/Details/343823004 +xref: NCIT:C34183 +xref: RETIRED_EHDAA2:0001523 +xref: Sex:cords +xref: UMLS:C1512242 {source="ncithesaurus:Gonadal_Cord"} +is_a: UBERON:0005154 {source="EHDAA2"} ! epithelial cord +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0012275 ! meso-epithelium +relationship: develops_from UBERON:0005294 ! gonadal ridge + +[Term] +id: UBERON:0005296 +name: ovary sex cord +def: "structures that develop from sex cords in the female. After further development they become the ovarian follicles." [http://en.wikipedia.org/wiki/Cortical_cords] +synonym: "cortical cord" RELATED [] +synonym: "cortical sex cord" RELATED [] +synonym: "ovary primitive sex cord" RELATED [] +synonym: "ovigerous cord" EXACT [] +synonym: "ovigerous cords" EXACT PLURAL [VHOG:0001339] +synonym: "secondary cord" RELATED [] +xref: Cortical:cords +xref: EHDAA2:0001363 +xref: EHDAA:8130 +xref: EMAPA:31058 +xref: http://linkedlifedata.com/resource/umls/id/C1511527 +xref: NCIT:C34134 +xref: UMLS:C1511527 {source="ncithesaurus:Cortical_Cord"} +xref: VHOG:0001339 +is_a: UBERON:0004911 ! epithelium of female gonad +is_a: UBERON:0005295 ! sex cord +intersection_of: UBERON:0005295 ! sex cord +intersection_of: part_of UBERON:0000992 ! ovary +relationship: develops_from UBERON:0010141 ! primitive sex cord of indifferent gonad + +[Term] +id: UBERON:0005297 +name: testis sex cord +def: "The testis cords are precursors to the rete testis. They play several different roles in the development of the male genitals[WP]." [http://en.wikipedia.org/wiki/Testis_cords] +subset: pheno_slim +synonym: "primary sex cord" RELATED [] +synonym: "testis cord" EXACT [MP:0006424] +synonym: "testis primary sex cords" EXACT [EHDAA2:0002011] +synonym: "testis primitive sex cord" RELATED [] +xref: EHDAA2:0002011 +xref: EHDAA:8152 +xref: EMAPA:29098 +xref: Testis:cords +xref: VHOG:0001321 +is_a: UBERON:0004910 ! epithelium of male gonad +is_a: UBERON:0005295 ! sex cord +intersection_of: UBERON:0005295 ! sex cord +intersection_of: part_of UBERON:0000473 ! testis +relationship: develops_from UBERON:0010141 ! primitive sex cord of indifferent gonad +relationship: immediate_transformation_of UBERON:0010141 {source="Bgee:AN"} ! primitive sex cord of indifferent gonad + +[Term] +id: UBERON:0005298 +name: skin of clitoris +def: "A zone of skin that is part of a clitoris [Automatically generated definition]." [OBOL:automatic] +synonym: "clitoris skin" EXACT [] +xref: FMA:20168 +xref: http://www.snomedbrowser.com/Codes/Details/361374002 +is_a: UBERON:0000014 ! zone of skin +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0002411 ! clitoris +relationship: part_of UBERON:0002411 ! clitoris + +[Term] +id: UBERON:0005299 +name: prepuce of clitoris +def: "A retractable double-layered fold of skin and mucous membrane that covers the clitoral glans." [http://en.wikipedia.org/wiki/Clitoral_hood, http://orcid.org/0000-0002-6601-2165] +synonym: "clitoral hood" EXACT [http://en.wikipedia.org/wiki/Clitoral_hood] +synonym: "clitoral prepuce" EXACT [] +synonym: "clitoris prepuce" EXACT [] +synonym: "prepuce of female" EXACT [EMAPA:30699] +synonym: "prepuce of the clitoris" EXACT [] +synonym: "preputium clitoridis" EXACT [http://en.wikipedia.org/wiki/Clitoral_hood] +xref: Clitoral:hood +xref: EMAPA:30699 +xref: FMA:20169 +xref: http://linkedlifedata.com/resource/umls/id/C0227771 +xref: http://www.snomedbrowser.com/Codes/Details/362242009 +xref: NCIT:C32590 +xref: UMLS:C0227771 {source="ncithesaurus:Female_Prepuce"} +is_a: UBERON:0011374 ! prepuce +intersection_of: UBERON:0011374 ! prepuce +intersection_of: part_of UBERON:0002411 ! clitoris +relationship: adjacent_to UBERON:0006653 ! glans clitoris +relationship: develops_from UBERON:0035006 ! preputial swelling of female +relationship: part_of UBERON:0002411 ! clitoris +relationship: transformation_of UBERON:0035006 ! preputial swelling of female + +[Term] +id: UBERON:0005300 +name: obsolete reproductive gland +is_obsolete: true +replaced_by: UBERON:0003937 + +[Term] +id: UBERON:0005301 +name: male preputial gland +def: "One of the sebaceous glands of the corona and neck of the glans penis." [https://sourceforge.net/p/obo/mammalian-phenotype-requests/1261/, MP:0002717] +subset: pheno_slim +synonym: "gland of Tyson" RELATED [BTO:0001111] +synonym: "preputial gland" BROAD [BTO:0001111, EMAPA:30640] +synonym: "preputial gland of male" EXACT [] +synonym: "preputial gland of penis" EXACT [FMA:19653] +xref: BTO:0001111 +xref: EMAPA:30659 +xref: http://linkedlifedata.com/resource/umls/id/C0227956 +xref: MA:0000403 +xref: NCIT:C79432 +xref: UMLS:C0227956 {source="ncithesaurus:Preputial_Gland"} +is_a: UBERON:0000359 ! preputial gland +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010147 ! male accessory sex gland +intersection_of: UBERON:0000359 ! preputial gland +intersection_of: part_of UBERON:0003101 ! male organism +disjoint_from: UBERON:0012327 ! pearly penile papule +relationship: part_of UBERON:0001332 ! prepuce of penis + +[Term] +id: UBERON:0005302 +name: female preputial gland +def: "The paired, lobulated, modified sebaceous glands located on the side of the clitoris in female rodents; in contrast to the preputial glands in male rodents, clitoral glands are a minor source of olfactory stimuli contributing to sexual attractivity; unlike other sebaceous glands, they undergo progressive atrophy of the glandular portion with marked ductal ectasia as rodents age." [https://sourceforge.net/p/obo/mammalian-phenotype-requests/1261/, MP:0011834] +subset: pheno_slim +synonym: "clitoral gland" EXACT [MA:0001702] +synonym: "preputial gland of female" EXACT [EMAPA:30499] +xref: BTO:0003119 +xref: EMAPA:30711 +xref: http://linkedlifedata.com/resource/umls/id/C2699356 +xref: MA:0001702 +xref: NCIT:C77617 +xref: UMLS:C2699356 {source="ncithesaurus:Clitoral_Gland"} +is_a: UBERON:0000359 ! preputial gland +is_a: UBERON:0005398 ! female reproductive gland +intersection_of: UBERON:0000359 ! preputial gland +intersection_of: part_of UBERON:0003100 ! female organism + +[Term] +id: UBERON:0005303 +name: hypogastric nerve +def: "The transition between the superior hypogastric plexus and the inferior hypogastric plexus." [http://en.wikipedia.org/wiki/Hypogastric_nerve] +synonym: "hypogastric nerve plexus" EXACT [MA:0001140] +synonym: "hypogastric plexus" EXACT [EMAPA:18225] +synonym: "nervus hypogastricus" RELATED LATIN [http://en.wikipedia.org/wiki/Hypogastric_nerve] +xref: EMAPA:18225 +xref: FMA:77596 +xref: http://linkedlifedata.com/resource/umls/id/C1711378 +xref: http://www.snomedbrowser.com/Codes/Details/181061006 +xref: Hypogastric:nerve +xref: MA:0001140 +xref: MESH:D007001 +xref: NCIT:C52831 +xref: UMLS:C1711378 {source="ncithesaurus:Hypogastric_Nerve_Plexus"} +is_a: UBERON:0001816 ! autonomic nerve plexus + +[Term] +id: UBERON:0005304 +name: submucous nerve plexus +def: "the gangliated plexus of unmyelinated nerve fibers that ramify the stomach and intestinal submucosa" [ISBN:0-683-40008-8, MP:0010800] +subset: pheno_slim +synonym: "Henle's plexus" RELATED [MA:0001149] +synonym: "Meissner's plexus" RELATED [HP:0002251, MA:0001149] +synonym: "meissner's plexus" RELATED [MA:0001149] +synonym: "submucosal nerve plexus" EXACT [FMA:21542, http://en.wikipedia.org/wiki/Meissner's_plexus] +xref: EMAPA:35834 +xref: FMA:21542 +xref: GAID:801 +xref: http://linkedlifedata.com/resource/umls/id/C0038564 +xref: http://www.snomedbrowser.com/Codes/Details/322349001 +xref: MA:0001149 +xref: Meissner's:plexus +xref: MESH:D013368 +xref: NCIT:C52747 +xref: UMLS:C0038564 {source="ncithesaurus:Submucous_Nerve_Plexus"} +is_a: UBERON:0000429 ! enteric plexus +relationship: contributes_to_morphology_of UBERON:0002005 ! enteric nervous system + +[Term] +id: UBERON:0005305 +name: thyroid follicle +def: "Discrete, cystlike units of the thyroid gland that are lined with cuboidal epithelium and are filled with a colloid substance, about 30 to each lobule[BTO]." [BTO:0004708] +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "thyroid follicles" RELATED PLURAL [ZFA:0001072] +synonym: "thyroid gland follicle" EXACT [] +xref: BTO:0004708 +xref: EMAPA:19307 +xref: EMAPA:19308 +xref: FMA:68805 +xref: http://linkedlifedata.com/resource/umls/id/C0229577 +xref: http://www.snomedbrowser.com/Codes/Details/176685006 +xref: MA:0000726 +xref: NCIT:C33782 +xref: TAO:0001072 +xref: UMLS:C0229577 {source="ncithesaurus:Thyroid_Gland_Follicle"} +xref: ZFA:0001072 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: contributes_to_morphology_of UBERON:0002046 ! thyroid gland +relationship: part_of UBERON:0002046 ! thyroid gland + +[Term] +id: UBERON:0005306 +name: blastema +def: "A blastema is a mass of cells capable of growth and regeneration into organs or body parts. Historically blastema have been thought to be composed of undifferentiated pluripotent cells, but recent research indicates that in some organisms blastema may retain memory of tissue origin.[1] Blastemata are typically found in the early stages of an organism's development such as in embryos, and in the regeneration of tissues, organs and bone[WP]. A regenerating tissue composed of a proliferative mass of undifferentiated progenitor cells from which new differentiated structures arise[ZFA]." [http://en.wikipedia.org/wiki/Blastema, ZFA:0001270, ZFIN:ZDB-PUB-061108-12] +subset: efo_slim +synonym: "blastemata" EXACT PLURAL [] +synonym: "regeneration blastema" EXACT [ZFIN:ZDB-PUB-061108-12] +xref: BTO:0001638 +xref: EFO:0003658 +xref: http://en.wikipedia.org/wiki/Blastema +xref: TAO:0001270 +xref: XAO:0004060 +is_a: UBERON:0007567 {source="ZFA"} ! regenerating anatomical structure + +[Term] +id: UBERON:0005307 +name: chorion-containing eggshell +def: "An eggshell that contains chorion. An example of this is found in Drosophila melanogaster." [GO:0007304] +is_a: UBERON:0005079 ! eggshell +intersection_of: UBERON:0005079 ! eggshell +intersection_of: has_part UBERON:0000920 ! egg chorion +relationship: has_part UBERON:0000920 ! egg chorion +relationship: present_in_taxon NCBITaxon:7227 {source="GO"} + +[Term] +id: UBERON:0005308 +name: nephrostome +def: "The nephrostome is the opening of the pronephros into the body cavity[GO]." [GO:0039018] +xref: AAO:0011069 +xref: http://en.wikipedia.org/wiki/Nephrostome +xref: XAO:0000062 +is_a: UBERON:0000161 ! orifice +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0002120 ! pronephros + +[Term] +id: UBERON:0005309 +name: pronephric nephron +def: "A pronephric nephron is the functional unit of the pronephros[GO]." [GO:0039019] +xref: AAO:0011091 +xref: XAO:0000285 +is_a: UBERON:0001285 ! nephron +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001285 ! nephron +intersection_of: part_of UBERON:0002120 ! pronephros +relationship: part_of UBERON:0002120 ! pronephros + +[Term] +id: UBERON:0005310 +name: pronephric nephron tubule +def: "The pronephric nephron tubule is an epithelial tube that is part of the pronephric nephron and connects the filtration unit (glomerulus or glomus) of the pronephros to the pronephric duct[GO]." [GO:0039020] +synonym: "ciliated neck segment" RELATED [ZFA:0001558] +synonym: "pronephric tubule" EXACT [ZFA:0001558] +xref: TAO:0001558 +xref: XAO:0004105 +xref: ZFA:0001558 +is_a: UBERON:0001231 ! nephron tubule +is_a: UBERON:0012275 ! meso-epithelium +intersection_of: UBERON:0001231 ! nephron tubule +intersection_of: part_of UBERON:0005309 ! pronephric nephron +relationship: dubious_for_taxon NCBITaxon:32524 {source="ISBN:0073040584"} +relationship: part_of UBERON:0005309 {source="GO"} ! pronephric nephron + +[Term] +id: UBERON:0005311 +name: mammary placode +def: "The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596] +synonym: "mammary anlage" RELATED [] +xref: EMAPA:35541 +is_a: UBERON:0011814 {source="NCBIBook:NBK53175"} ! non-neurogenic ectodermal placode +relationship: develops_from UBERON:0008425 {source="Stedmans"} ! mammary ridge +relationship: part_of UBERON:0000076 {source="http://www.ncbi.nlm.nih.gov/pubmed/20484386"} ! external ectoderm + +[Term] +id: UBERON:0005312 +name: primary ureteric bud +def: "." [GO:0060682] +is_a: UBERON:0000084 ! ureteric bud + +[Term] +id: UBERON:0005313 +name: mammary duct terminal end bud +def: "A unique club-shaped epithelial structure that develops at the tip of the mammary duct at the onset of puberty under the action of circulating hormones." [MGI:anna] +xref: EMAPA:37900 {source="MA:th"} +is_a: UBERON:0003244 ! epithelium of mammary gland +is_a: UBERON:0005153 ! epithelial bud +is_a: UBERON:0034969 ! epithelial layer of duct +relationship: part_of UBERON:0001765 ! mammary duct + +[Term] +id: UBERON:0005314 +name: alveolar primary septum +def: "A primary alveolar septum is a specialized epithelium that surrounds the saccule as it forms[GO]." [GO:0061143] +is_a: UBERON:0004821 ! pulmonary alveolus epithelium +relationship: bounding_layer_of UBERON:0000116 ! lung saccule +relationship: part_of UBERON:0000116 ! lung saccule + +[Term] +id: UBERON:0005315 +name: alveolar secondary septum +def: "A secondary alveolar septum is a specialized epithelium that subdivides the initial saccule[GO]." [GO:0061144] +is_a: UBERON:0004821 ! pulmonary alveolus epithelium +relationship: bounding_layer_of UBERON:0000116 ! lung saccule +relationship: part_of UBERON:0000116 ! lung saccule + +[Term] +id: UBERON:0005316 +name: endocardial endothelium +def: "The endothelial lining of the endocardium." [UBERON:cjm] +synonym: "endocardium endothelium" EXACT [FMA:83596] +synonym: "endothelium of endocardium" EXACT [FMA:83596] +xref: FMA:83596 +is_a: UBERON:0008307 ! heart endothelium +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0002165 ! endocardium +relationship: part_of UBERON:0002165 ! endocardium + +[Term] +id: UBERON:0005317 +name: pulmonary artery endothelium +def: "An pulmonary artery endothelium is an epithelium that lines the pulmonary artery[GO]." [GO:0061155] +synonym: "pulmonary artery endothelial tube" EXACT [GO:0061155] +xref: BTO:0000137 +is_a: UBERON:0001917 ! endothelium of artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0002012 ! pulmonary artery +relationship: part_of UBERON:0002012 ! pulmonary artery + +[Term] +id: UBERON:0005319 +name: mesonephric collecting duct +def: "The collecting duct is the final common path through which urine flows before entering the ureter and then emptying into the bladder[GO]." [GO:0061211] +xref: AAO:0010390 +xref: XAO:0000151 +is_a: UBERON:0001232 ! collecting duct of renal tubule +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001232 ! collecting duct of renal tubule +intersection_of: part_of UBERON:0000080 ! mesonephros +relationship: part_of UBERON:0005322 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! mesonephric nephron + +[Term] +id: UBERON:0005320 +name: mesonephric juxtaglomerular apparatus +def: "The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate[GO]." [GO:0061212] +is_a: UBERON:0002303 ! juxtaglomerular apparatus +intersection_of: UBERON:0002303 ! juxtaglomerular apparatus +intersection_of: part_of UBERON:0000080 ! mesonephros +relationship: part_of UBERON:0000080 ! mesonephros + +[Term] +id: UBERON:0005321 +name: mesonephric smooth muscle tissue +def: "." [GO:0061214] +is_a: UBERON:0001135 ! smooth muscle tissue +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0000080 ! mesonephros +relationship: part_of UBERON:0000080 ! mesonephros + +[Term] +id: UBERON:0005322 +name: mesonephric nephron +def: "A nephron that is part of a mesonephros." [http://orcid.org/0000-0002-6601-2165] +synonym: "nephron of mesonephros" EXACT [] +synonym: "stage IV nephron" RELATED [ZFA:0005592] +xref: AAO:0010387 +xref: XAO:0000292 +xref: ZFA:0005592 +is_a: UBERON:0001285 ! nephron +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001285 ! nephron +intersection_of: part_of UBERON:0000080 ! mesonephros +relationship: develops_from UBERON:0005323 {source="XAO"} ! mesonephric mesenchyme +relationship: part_of UBERON:0000080 ! mesonephros + +[Term] +id: UBERON:0005323 +name: mesonephric mesenchyme +def: "Mesonephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the mesonephros[GO]." [GO:0061219] +subset: pheno_slim +xref: AAO:0011062 +xref: EHDAA2:0001132 +xref: EMAPA:16745 +xref: XAO:0000291 +is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0000080 ! mesonephros +relationship: part_of UBERON:0000080 ! mesonephros + +[Term] +id: UBERON:0005324 +name: mesonephric macula densa +def: "The mesonephric macula densa is an area of specialized cells in the distal tubule of the mesonephros that makes contact with the vascular pole of the glomerulus[GO]." [GO:0061220] +is_a: UBERON:0002335 ! macula densa +is_a: UBERON:0005330 ! mesonephric nephron epithelium +intersection_of: UBERON:0002335 ! macula densa +intersection_of: part_of UBERON:0000080 ! mesonephros +relationship: part_of UBERON:0005320 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! mesonephric juxtaglomerular apparatus + +[Term] +id: UBERON:0005325 +name: mesonephric glomerulus +def: "The mesonephric glomerulus is a capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the mature vertebrate kidney, or mesonephros[GO]." [GO:0061224] +synonym: "glomerulus" BROAD SENSU [AAO:0010388] +xref: AAO:0010388 +xref: EMAPA:30568 +xref: http://www.snomedbrowser.com/Codes/Details/362217000 +xref: VHOG:0001238 +xref: XAO:0000146 +is_a: UBERON:0000074 ! renal glomerulus +intersection_of: UBERON:0000074 ! renal glomerulus +intersection_of: part_of UBERON:0000080 ! mesonephros +relationship: part_of UBERON:0000080 ! mesonephros + +[Term] +id: UBERON:0005326 +name: mesonephric glomerulus vasculature +def: "The mesonephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the mesonephric glomerulus[GO]." [GO:0061231] +is_a: UBERON:0004190 ! renal glomerulus vasculature +intersection_of: UBERON:0004190 ! renal glomerulus vasculature +intersection_of: part_of UBERON:0000080 ! mesonephros +relationship: part_of UBERON:0005325 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! mesonephric glomerulus + +[Term] +id: UBERON:0005327 +name: mesonephric glomerular epithelium +def: "A mesonephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the mesonephros[GO]." [GO:0061232] +is_a: UBERON:0004188 ! glomerular epithelium +is_a: UBERON:0005330 ! mesonephric nephron epithelium +intersection_of: UBERON:0004188 ! glomerular epithelium +intersection_of: part_of UBERON:0000080 ! mesonephros +relationship: part_of UBERON:0005325 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! mesonephric glomerulus + +[Term] +id: UBERON:0005328 +name: mesonephric comma-shaped body +def: "The mesonephric comma-shaped body is the precursor structure to the mesonephric S-shaped body that contributes to the morphogenesis of a nephron in the mesonephros[GO]." [GO:0061236] +is_a: UBERON:0004198 ! comma-shaped body +intersection_of: UBERON:0004198 ! comma-shaped body +intersection_of: part_of UBERON:0000080 ! mesonephros +relationship: part_of UBERON:0000080 ! mesonephros + +[Term] +id: UBERON:0005329 +name: mesonephric nephron tubule +def: "A mesonephric nephron tubule is an epithelial tube that is part of the mesonephric nephron, the functional part of the mesonephros[GO]." [GO:0061240] +synonym: "mesonephric renal tubule" EXACT [https://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0000083 ! mesonephric tubule +is_a: UBERON:0001231 ! nephron tubule +is_a: UBERON:0005330 ! mesonephric nephron epithelium + +[Term] +id: UBERON:0005330 +name: mesonephric nephron epithelium +def: "The mesonephric nephron epithelium is a tissue that covers the surface of a nephron in the mesonephros[GO]." [GO:0061241] +is_a: UBERON:0004211 ! nephron epithelium +is_a: UBERON:0005103 ! mesonephric epithelium +intersection_of: UBERON:0004211 ! nephron epithelium +intersection_of: part_of UBERON:0000080 ! mesonephros +relationship: part_of UBERON:0005322 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! mesonephric nephron + +[Term] +id: UBERON:0005331 +name: mesonephric renal vesicle +def: "The renal vesicle is the primordial structure of the mesonephric nephron epithelium, and is formed by the condensation of mesenchymal cells[GO]." [GO:0061243] +synonym: "mesonephric vesicle" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/361407006 +xref: ZFA:0005586 +is_a: UBERON:0004209 ! renal vesicle +is_a: UBERON:0005103 ! mesonephric epithelium +intersection_of: UBERON:0004209 ! renal vesicle +intersection_of: part_of UBERON:0000080 ! mesonephros +relationship: develops_from UBERON:0010534 {source="ZFA"} ! primitive mesonephric nephron +relationship: has_potential_to_develop_into UBERON:0005330 ! mesonephric nephron epithelium + +[Term] +id: UBERON:0005332 +name: mesonephric S-shaped body +def: "The mesonephric S-shaped body is the successor of the mesonephric comma-shaped body that contributes to the morphogenesis of a nephron in the mesonephros[GO]." [GO:0061244] +is_a: UBERON:0004199 ! S-shaped body +intersection_of: UBERON:0004199 ! S-shaped body +intersection_of: part_of UBERON:0000080 ! mesonephros +relationship: part_of UBERON:0000080 ! mesonephros + +[Term] +id: UBERON:0005333 +name: mammary bud +alt_id: UBERON:0004181 +def: "A bulb of epithelial cells that forms from the mammary placode that develops into the mammary gland." [http://orcid.org/0000-0002-6601-2165] +synonym: "lactiferous gland bud" EXACT [] +synonym: "mammary gland bud" EXACT [GO:0060648] +synonym: "mammary primordium" RELATED [] +synonym: "milk bud" RELATED [] +xref: EMAPA:35536 +is_a: UBERON:0005153 ! epithelial bud +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0005153 ! epithelial bud +intersection_of: transformation_of UBERON:0005311 ! mammary placode +relationship: develops_from UBERON:0005311 ! mammary placode +relationship: transformation_of UBERON:0005311 ! mammary placode + +[Term] +id: UBERON:0005334 +name: oral lamina propria +def: "A lamina propria that is part of a mucosa of oral region." [OBOL:automatic] +synonym: "lamina propria of oral mucosa" EXACT [] +xref: EMAPA:26947 +is_a: UBERON:0000030 ! lamina propria +intersection_of: UBERON:0000030 ! lamina propria +intersection_of: part_of UBERON:0003343 ! mucosa of oral region +relationship: part_of UBERON:0003343 ! mucosa of oral region + +[Term] +id: UBERON:0005335 +name: chorioallantoic membrane +def: "The chorioallantoic membrane is a vascular membrane found in eggs of some amniotes, such as birds and reptiles. It is formed by the fusion of the mesodermal layers of two developmental structures: the allantois and the chorion. Three different layers compose the chorioallantoic membrane; these are called the chorionic epithelium, the mesenchyme and the allantoic epithelium. Blood capillaries and sinuses are found between epithelial cells of the chorionic layer, allowing close contact (within 0.2 N" EXACT LATIN [FMA:TA] +xref: Cremaster:muscle +xref: EMAPA:31250 +xref: FMA:21531 +xref: http://linkedlifedata.com/resource/umls/id/C0224377 +xref: http://www.snomedbrowser.com/Codes/Details/244948006 +xref: NCIT:C32396 +xref: UMLS:C0224377 {source="ncithesaurus:Cremaster_Muscle"} +is_a: UBERON:0001630 ! muscle organ +is_a: UBERON:0005156 ! reproductive structure +relationship: contributes_to_morphology_of UBERON:0001015 ! musculature +relationship: has_muscle_insertion UBERON:0006650 {source="dbpedia"} ! tunica vaginalis testis +relationship: has_muscle_origin UBERON:0006204 {source="dbpedia"} ! inguinal ligament +relationship: part_of UBERON:0000079 ! male reproductive system + +[Term] +id: UBERON:0008521 +name: gluteus minimus +def: "The smallest of the three gluteal muscles, situated immediately beneath the gluteus medius." [http://en.wikipedia.org/wiki/Gluteus_minimus_muscle] +synonym: "glutaeus minimus" RELATED [http://en.wikipedia.org/wiki/Gluteus_minimus_muscle] +synonym: "gluteus minimus" RELATED [http://en.wikipedia.org/wiki/Gluteus_minimus_muscle] +synonym: "gluteus minimus muscle" EXACT [] +synonym: "gluteus profundus" RELATED [EMAPA:36230] +synonym: "glutæus minimus" RELATED [http://en.wikipedia.org/wiki/Gluteus_minimus_muscle] +synonym: "musculus gluteus minimus" RELATED LATIN [http://en.wikipedia.org/wiki/Gluteus_minimus_muscle] +xref: EMAPA:36230 +xref: FMA:22317 +xref: http://en.wikipedia.org/wiki/Gluteus_minimus_muscle +xref: http://www.snomedbrowser.com/Codes/Details/181676004 +is_a: UBERON:0002000 {source="FMA"} ! gluteal muscle +relationship: attaches_to UBERON:0002503 {source="FMA"} ! greater trochanter +relationship: has_muscle_insertion UBERON:0002503 {notes="Greater trochanter of the femur", source="dbpedia"} ! greater trochanter +relationship: has_muscle_origin UBERON:0001273 {notes="Gluteal surface of ilium under gluteus medius.", source="dbpedia"} ! ilium + +[Term] +id: UBERON:0008522 +name: nasal muscle +def: "Any muscle organ that is part of an nose." [OBOL:automatic] +synonym: "muscle of nose" EXACT [OBOL:automatic] +xref: FMA:73758 +xref: http://linkedlifedata.com/resource/umls/id/C0224219 +xref: http://www.snomedbrowser.com/Codes/Details/244730009 +xref: NCIT:C33158 +xref: UMLS:C0224219 {source="ncithesaurus:Nasal_Muscle"} +is_a: UBERON:0001577 {source="FMA"} ! facial muscle +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0001630 ! muscle organ +intersection_of: part_of UBERON:0000004 ! nose +relationship: part_of UBERON:0000004 ! nose + +[Term] +id: UBERON:0008523 +name: infrahyoid muscle +def: "The infrahyoid muscles are a group of four pairs of muscles in the anterior part of the neck. (The term infrahyoid refers to the region below to the hyoid bone in the neck. ) Collectively, they are referred to as the strap muscles, because the muscles are long and flat much like a strap." [http://en.wikipedia.org/wiki/Infrahyoid_muscles] +synonym: "infrahyoid" RELATED [http://en.wikipedia.org/wiki/Infrahyoid_muscles] +synonym: "infrahyoid muscle" RELATED [http://en.wikipedia.org/wiki/Infrahyoid_muscles] +synonym: "infrahyoidala" RELATED [http://en.wikipedia.org/wiki/Infrahyoid_muscles] +synonym: "musculi infrahyoidei" RELATED LATIN [http://en.wikipedia.org/wiki/Infrahyoid_muscles] +synonym: "musculus infrahyoideus" EXACT LATIN [FMA:13338, FMA:TA] +synonym: "strap muscle" RELATED [http://en.wikipedia.org/wiki/Infrahyoid_muscles] +synonym: "strap muscles" RELATED [http://en.wikipedia.org/wiki/Infrahyoid_muscles] +xref: FMA:13338 +xref: http://www.snomedbrowser.com/Codes/Details/244829008 +xref: Infrahyoid:muscles +is_a: UBERON:0005493 ! hyoid muscle +intersection_of: UBERON:0005493 ! hyoid muscle +intersection_of: posterior_to UBERON:0001685 ! hyoid bone +relationship: innervated_by UBERON:0005430 {source="dbpedia"} ! ansa cervicalis +relationship: posterior_to UBERON:0001685 ! hyoid bone + +[Term] +id: UBERON:0008529 +name: piriformis muscle +def: "The piriformis is a muscle in the gluteal region that originates from the anterior (front) part of the sacrum, the part of the spine in the gluteal region, and from the superior margin of the greater sciatic notch (as well as the sacroiliac joint capsule and the sacrotuberous ligament). It exits the pelvis through the greater sciatic foramen to insert on the greater trochanter of the femur. Its tendon often joins with the tendons of the superior gemellus, inferior gemellus, and obturator internus muscles prior to insertion[WP,modified]." [http://en.wikipedia.org/wiki/Piriformis_muscle] +synonym: "m.piriformis" EXACT [FMA:19082] +synonym: "musculus piriformis" RELATED [http://en.wikipedia.org/wiki/Piriformis_muscle] +synonym: "musculus piriformis" RELATED LATIN [http://en.wikipedia.org/wiki/Piriformis_muscle] +synonym: "piriform muscle" RELATED [http://en.wikipedia.org/wiki/Piriformis_muscle] +synonym: "piriformis" EXACT [FMA:19082] +synonym: "piriformis muscle" RELATED [http://en.wikipedia.org/wiki/Piriformis_muscle] +xref: EMAPA:36239 +xref: FMA:19082 +xref: http://www.snomedbrowser.com/Codes/Details/245019009 +xref: Piriformis:muscle +is_a: UBERON:0002000 {source="FMA"} ! gluteal muscle +is_a: UBERON:0003897 ! axial muscle +relationship: has_muscle_insertion UBERON:0002503 {source="dbpedia"} ! greater trochanter +relationship: has_muscle_origin UBERON:0003690 {source="dbpedia"} ! fused sacrum + +[Term] +id: UBERON:0008537 +name: quadratus femoris +def: "The quadratus femoris is, as its name implies, a flat, quadrilateral skeletal muscle. Located on the posterior side of the hip joint, it is a strong lateral rotator and adductor of the thigh, but also acts to stabilize the femoral head in the Acetabulum." [http://en.wikipedia.org/wiki/Quadratus_femoris_muscle] +synonym: "musculus quadratus femoris" RELATED LATIN [http://en.wikipedia.org/wiki/Quadratus_femoris_muscle] +synonym: "quadratus femoris muscle" RELATED [http://en.wikipedia.org/wiki/Quadratus_femoris_muscle] +xref: EMAPA:36241 +xref: FMA:22321 +xref: http://en.wikipedia.org/wiki/Quadratus_femoris_muscle +xref: http://www.snomedbrowser.com/Codes/Details/245020003 +is_a: UBERON:0002000 {source="FMA"} ! gluteal muscle + +[Term] +id: UBERON:0008544 +name: splenius cervicis +def: "A muscle that arises from the spinous processes of the third to the sixth thoracic vertebrae and inserts into the posterior tubercles of the transverse processes of the upper two or three cervical vertebrae[WP,modified]." [http://en.wikipedia.org/wiki/Splenius_cervicis_muscle] +synonym: "musculus splenius cervicis" RELATED LATIN [http://en.wikipedia.org/wiki/Splenius_cervicis_muscle] +synonym: "splenius cervicis muscle" RELATED [http://en.wikipedia.org/wiki/Splenius_cervicis_muscle] +xref: FMA:22681 +xref: http://en.wikipedia.org/wiki/Splenius_cervicis_muscle +is_a: UBERON:0002252 {source="FMA"} ! splenius +relationship: has_muscle_insertion UBERON:0001077 {notes="transverse processes of C1-C3", source="dbpedia"} ! transverse process of vertebra +relationship: has_muscle_origin UBERON:0001076 ! neural spine + +[Term] +id: UBERON:0008546 +name: iliocostalis cervicis muscle +def: "The iliocostalis cervicis (cervicalis ascendens) arises from the angles of the third, fourth, fifth, and sixth ribs, and is inserted into the posterior tubercles of the transverse processes of the fourth, fifth, and sixth cervical vertebrae.." [http://en.wikipedia.org/wiki/Iliocostalis#Iliocostalis_cervicis] +synonym: "cervicalis ascendens" RELATED [http://en.wikipedia.org/wiki/Iliocostalis] +synonym: "cervicalis ascendens muscle" RELATED [http://en.wikipedia.org/wiki/Iliocostalis] +synonym: "iliocostalis cervicis" RELATED [http://en.wikipedia.org/wiki/Iliocostalis] +xref: FMA:22704 +xref: http://www.snomedbrowser.com/Codes/Details/244851000 +xref: Iliocostalis_cervicis +is_a: UBERON:0002251 {source="FMA"} ! iliocostalis muscle + +[Term] +id: UBERON:0008549 +name: prevertebral muscle +def: "One of the muscles deep to the prevertebral fascia on the anterior surface of the cervical and superior three thoracic vertebrae, symmetrically placed on each side of the median plane, including the longus colli, longus capitis, rectus capitis anterior, and rectus capitis lateralis muscles. innervated by anterior rami of cervical spinal nerves." [http://www.drugs.com/dict/prevertebral-muscles.html] +comment: some authorities define the group as medial to the plane of the cervicobrachial plexus, and thus also include the anterior scalene muscle. Action notes: flexors of the head and neck +synonym: "flexor muscle of vertebral column" EXACT [FMA:32514] +synonym: "prevertebral muscle" EXACT [FMA:32514] +xref: FMA:32514 +xref: Prevertebral:muscles +is_a: UBERON:0004518 ! muscle of vertebral column +relationship: innervated_by UBERON:0006838 ! ventral ramus of spinal nerve + +[Term] +id: UBERON:0008571 +name: suprahyoid muscle +def: "A muscle in the region above the hyoid bone in the neck. The suprahyoid muscles include digastric, stylohyoid, geniohyoid, and mylohyoid." [http://en.wikipedia.org/wiki/Suprahyoid_muscles] +synonym: "musculi suprahyoidei" RELATED LATIN [http://en.wikipedia.org/wiki/Suprahyoid_muscles] +synonym: "suprahyoid" RELATED [http://en.wikipedia.org/wiki/Suprahyoid_muscles] +synonym: "suprahyoidala" RELATED [http://en.wikipedia.org/wiki/Suprahyoid_muscles] +xref: FMA:46290 +xref: http://www.snomedbrowser.com/Codes/Details/244824003 +xref: Suprahyoid:muscles +is_a: UBERON:0005493 ! hyoid muscle +intersection_of: UBERON:0005493 ! hyoid muscle +intersection_of: anterior_to UBERON:0001685 ! hyoid bone +relationship: anterior_to UBERON:0001685 ! hyoid bone + +[Term] +id: UBERON:0008572 +name: posterior crico-arytenoid +def: "The posterior cricoarytenoid muscles are extremely small, paired muscles that extend from the posterior cricoid cartilage to the arytenoid cartilages in the larynx. By rotating the arytenoid cartilages laterally, these muscles abduct the vocal cords and thereby open the rima glottidis. Their action opposes the lateral cricoarytenoid muscles. The posterior cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X). Paralysis of the posterior cricoarytenoid muscles may lead to asphyxiation as they are the only laryngeal muscles to open the true vocal folds, allowing inspiration and expiration." [http://en.wikipedia.org/wiki/Posterior_cricoarytenoid_muscle] +synonym: "cricoarytaenoideus posterior" RELATED [http://en.wikipedia.org/wiki/Posterior_cricoarytenoid_muscle] +synonym: "cricoarytænoideus posterior" RELATED [http://en.wikipedia.org/wiki/Posterior_cricoarytenoid_muscle] +synonym: "musculus cricoarytenoideus posterior" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_cricoarytenoid_muscle] +synonym: "posterior cricoarytenoid" EXACT [FMA:46576] +synonym: "posterior cricoarytenoid muscle" EXACT [http://en.wikipedia.org/wiki/Posterior_cricoarytenoid_muscle] +synonym: "posterior cricoarytenoideus" EXACT [FMA:46576] +xref: FMA:46576 +xref: http://en.wikipedia.org/wiki/Posterior_cricoarytenoid_muscle +xref: http://www.snomedbrowser.com/Codes/Details/244812005 +is_a: UBERON:0010932 ! crico-arytenoid muscle +relationship: has_muscle_antagonist UBERON:0008573 {source="dbpedia"} ! lateral crico-arytenoid + +[Term] +id: UBERON:0008573 +name: lateral crico-arytenoid +def: "The lateral cricoarytenoid (also anterior cricoarytenoid) muscles extend from the lateral cricoid cartilage to the ipsilateral arytenoid cartilage. By rotating the arytenoid cartilages medially, these muscles adduct the vocal cords and thereby close the rima glottidis, protecting the airway. (Their action is antagonistic to that of the posterior cricoarytenoid muscles. ) The lateral cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X)." [http://en.wikipedia.org/wiki/Lateral_cricoarytenoid_muscle] +synonym: "cricoarytaenoideus lateralis" RELATED [http://en.wikipedia.org/wiki/Lateral_cricoarytenoid_muscle] +synonym: "cricoarytaenoideus lateralis muscle" RELATED [http://en.wikipedia.org/wiki/Lateral_cricoarytenoid_muscle] +synonym: "cricoarytænoideus lateralis" RELATED [http://en.wikipedia.org/wiki/Lateral_cricoarytenoid_muscle] +synonym: "cricoarytænoideus lateralis muscle" RELATED [http://en.wikipedia.org/wiki/Lateral_cricoarytenoid_muscle] +synonym: "lateral cricoarytenoid" EXACT [FMA:46579] +synonym: "lateral cricoarytenoid muscle" EXACT [http://en.wikipedia.org/wiki/Lateral_cricoarytenoid_muscle] +synonym: "lateral cricoarytenoideus" EXACT [FMA:46579] +synonym: "musculus cricoarytenoideus lateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_cricoarytenoid_muscle] +xref: FMA:46579 +xref: http://en.wikipedia.org/wiki/Lateral_cricoarytenoid_muscle +xref: http://www.snomedbrowser.com/Codes/Details/244813000 +is_a: UBERON:0010932 ! crico-arytenoid muscle +relationship: has_muscle_antagonist UBERON:0008572 {source="dbpedia"} ! posterior crico-arytenoid + +[Term] +id: UBERON:0008574 +name: transverse arytenoid +def: "The tranverse arytenoid crosses transversely between the two cartilages. It is an unpaired muscle running from one arytenoid to another to pull the arytenoids together." [http://en.wikipedia.org/wiki/Arytenoid_muscle] +synonym: "arytenoid transversus" RELATED [] +synonym: "tranverse arytenoid muscle" RELATED [http://en.wikipedia.org/wiki/Transverse_arytenoid] +xref: Arytenoid:muscle +xref: FMA:46582 +is_a: UBERON:0010958 ! arytenoid muscle + +[Term] +id: UBERON:0008575 +name: oblique arytenoid +def: "The oblique arytenoid, the more superficial Arytenoid muscle, forms two fasciculi, which pass from the base of one cartilage to the apex of the opposite one, and therefore cross each other like the limbs of the letter X; a few fibers are continued around the lateral margin of the cartilage, and are prolonged into the aryepiglottic fold; they are sometimes described as a separate muscle, the Aryepiglotticus. The aryepiglottic muscle together with the transverse arytenoid and the thyroarytenoid work as a sphincter and close the larynx as we swallow or cough. Its innervation is by the recurrent laryngeal nerve (from vagus) just like all the intrinsic muscles of the larynx except the cricothyroid muscle." [http://en.wikipedia.org/wiki/Oblique_arytenoid_muscle] +synonym: "arytenoid obliquus" RELATED [] +synonym: "oblique arytenoid muscle" RELATED [http://en.wikipedia.org/wiki/Oblique_arytenoid] +xref: FMA:46583 +xref: http://en.wikipedia.org/wiki/Oblique_arytenoid_muscle +xref: http://www.snomedbrowser.com/Codes/Details/244817004 +is_a: UBERON:0010958 ! arytenoid muscle + +[Term] +id: UBERON:0008576 +name: thyro-arytenoid +def: "The Thyroarytenoid is a broad, thin, muscle which lies parallel with and lateral to the vocal fold, and supports the wall of the ventricle and its appendix. It functions in fine tonal control of the vocal cords." [http://en.wikipedia.org/wiki/Thyroarytenoid_muscle] +synonym: "musculus thyroarytenoideus" RELATED LATIN [http://en.wikipedia.org/wiki/Thyroarytenoid_muscle] +synonym: "thyreoarytaenoideus" RELATED [http://en.wikipedia.org/wiki/Thyroarytenoid_muscle] +synonym: "thyreoarytaenoideus muscle" RELATED [http://en.wikipedia.org/wiki/Thyroarytenoid_muscle] +synonym: "thyreoarytænoideus" RELATED [http://en.wikipedia.org/wiki/Thyroarytenoid_muscle] +synonym: "thyreoarytænoideus muscle" RELATED [http://en.wikipedia.org/wiki/Thyroarytenoid_muscle] +synonym: "thyreoepiglotticus" RELATED [http://en.wikipedia.org/wiki/Thyroarytenoid_muscle] +synonym: "thyro-arytenoid %26 vocalis" RELATED [http://en.wikipedia.org/wiki/Thyroarytenoid_muscle] +synonym: "thyro-arytenoid muscle" RELATED [http://en.wikipedia.org/wiki/Thyroarytenoid_muscle] +synonym: "thyroarytenoid" EXACT [http://en.wikipedia.org/wiki/Thyroarytenoid_muscle] +synonym: "thyroarytenoid muscle" RELATED [http://en.wikipedia.org/wiki/Thyroarytenoid_muscle] +synonym: "thyroarytænoideus" RELATED [http://en.wikipedia.org/wiki/Thyroarytenoid_muscle] +synonym: "ventricularis" RELATED [http://en.wikipedia.org/wiki/Thyroarytenoid_muscle] +synonym: "ventricularis muscle" RELATED [http://en.wikipedia.org/wiki/Thyroarytenoid_muscle] +xref: FMA:46588 +xref: http://linkedlifedata.com/resource/umls/id/C0224183 +xref: http://www.snomedbrowser.com/Codes/Details/361814004 +xref: NCIT:C33776 +xref: Thyroarytenoid:muscle +xref: UMLS:C0224183 {source="ncithesaurus:Thyroarytenoid_Muscle"} +is_a: UBERON:0006328 {source="FMA"} ! laryngeal intrinsic muscle +relationship: has_muscle_insertion UBERON:0001740 {notes="Anterior surface of arytenoid cartilage", source="dbpedia"} ! arytenoid cartilage +relationship: has_muscle_origin UBERON:0001738 {notes="Inner surface of the thyroid cartilage", source="dbpedia"} ! thyroid cartilage +relationship: innervated_by UBERON:0003716 {notes="recurrent laryngeal branch of the vagus", source="dbpedia"} ! recurrent laryngeal nerve + +[Term] +id: UBERON:0008577 +name: vocalis muscle +def: "The vocal muscle is the upper portion of the thyroarytenoid muscle which is primarily involved in producing speech." [http://en.wikipedia.org/wiki/Vocal_muscle] +synonym: "musculus vocalis" RELATED LATIN [http://en.wikipedia.org/wiki/Vocal_muscle] +synonym: "vocal muscle" EXACT [FMA:46591] +synonym: "vocalis" EXACT [] +xref: FMA:46591 +xref: http://linkedlifedata.com/resource/umls/id/C0224181 +xref: http://www.snomedbrowser.com/Codes/Details/244820007 +xref: NCIT:C33886 +xref: UMLS:C0224181 {source="ncithesaurus:Vocalis_Muscle"} +xref: Vocal:muscle +is_a: UBERON:0006328 {source="FMA"} ! laryngeal intrinsic muscle +is_a: UBERON:0034681 ! vocal organ +relationship: part_of UBERON:0008576 {source="FEED:rd", source="Wikipedia"} ! thyro-arytenoid + +[Term] +id: UBERON:0008582 +name: superior longitudinal muscle of tongue +def: "A muscle of the tongue that consists of a thin stratum of oblique and longitudinal fibers immediately underlying the mucous membrane on the dorsum of the tongue." [http://en.wikipedia.org/wiki/Superior_longitudinal_muscle_of_tongue] +synonym: "longitudinalis linguae superior" RELATED [http://en.wikipedia.org/wiki/Superior_longitudinal_muscle_of_tongue] +synonym: "longitudinalis linguæ superior" RELATED [http://en.wikipedia.org/wiki/Superior_longitudinal_muscle_of_tongue] +synonym: "musculus longitudinalis superior" EXACT [FMA:46693] +synonym: "musculus longitudinalis superior linguae" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_longitudinal_muscle_of_tongue] +synonym: "superior lingualis" RELATED [http://en.wikipedia.org/wiki/Superior_longitudinal_muscle_of_tongue] +synonym: "superior longitudinal muscle" RELATED [http://en.wikipedia.org/wiki/Superior_longitudinal_muscle_of_tongue] +xref: FMA:46693 +xref: http://en.wikipedia.org/wiki/Superior_longitudinal_muscle_of_tongue +xref: http://www.snomedbrowser.com/Codes/Details/244790006 +is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue +is_a: UBERON:0012369 ! longitudinal muscle layer of muscular coat +relationship: has_muscle_insertion UBERON:0001723 {notes="edges of the tongue", source="dbpedia"} ! tongue +relationship: has_muscle_origin UBERON:0014790 {source="Wikipedia"} ! lingual septum + +[Term] +id: UBERON:0008583 +name: transverse muscle of tongue +def: "A muscle of the tongue that consists of fibers which arise from the median fibrous septum and pass lateralward to be inserted into the submucous fibrous tissue at the sides of the tongue." [http://en.wikipedia.org/wiki/Transverse_muscle_of_tongue] +synonym: "intrinsic tongue muscle transverse component" EXACT [MA:0002328] +synonym: "musculus transversus linguae" RELATED LATIN [http://en.wikipedia.org/wiki/Transverse_muscle_of_tongue] +synonym: "transverse lingual muscle" EXACT [FMA:46695] +synonym: "transverse muscle" RELATED [http://en.wikipedia.org/wiki/Transverse_muscle_of_tongue] +synonym: "transversus linguae" RELATED [http://en.wikipedia.org/wiki/Transverse_muscle_of_tongue] +synonym: "transversus linguæ" RELATED [http://en.wikipedia.org/wiki/Transverse_muscle_of_tongue] +synonym: "transversus muscle" RELATED [http://en.wikipedia.org/wiki/Transverse_muscle_of_tongue] +xref: EMAPA:18281 +xref: FMA:46695 +xref: http://en.wikipedia.org/wiki/Transverse_muscle_of_tongue +xref: http://linkedlifedata.com/resource/umls/id/C1708561 +xref: http://www.snomedbrowser.com/Codes/Details/244792003 +xref: MA:0002328 +xref: NCIT:C52706 +xref: UMLS:C1708561 {source="ncithesaurus:Intrinsic_Tongue_Muscle_Transverse_Component"} +is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue +relationship: has_muscle_insertion UBERON:0001723 {notes="sides of the tongue", source="dbpedia"} ! tongue +relationship: has_muscle_origin UBERON:0014790 {source="Wikipedia"} ! lingual septum + +[Term] +id: UBERON:0008584 +name: vertical muscle of tongue +def: "A muscle of the tongue that is found only at the borders of the forepart of the tongue. Its fibers extend from the upper to the under surface of the organ." [http://en.wikipedia.org/wiki/Vertical_muscle_of_tongue] +synonym: "intrinsic tongue muscle vertical component" EXACT [MA:0002329] +synonym: "musculus verticalis linguae" RELATED LATIN [http://en.wikipedia.org/wiki/Vertical_muscle_of_tongue] +synonym: "vertical lingual muscle" EXACT [FMA:46696] +synonym: "vertical muscle" RELATED [http://en.wikipedia.org/wiki/Vertical_muscle_of_tongue] +synonym: "verticalis linguae" RELATED [http://en.wikipedia.org/wiki/Vertical_muscle_of_tongue] +synonym: "verticalis linguae muscle" RELATED [http://en.wikipedia.org/wiki/Vertical_muscle_of_tongue] +synonym: "verticalis linguæ" RELATED [http://en.wikipedia.org/wiki/Vertical_muscle_of_tongue] +synonym: "verticalis linguæ muscle" RELATED [http://en.wikipedia.org/wiki/Vertical_muscle_of_tongue] +synonym: "verticalis muscle" RELATED [http://en.wikipedia.org/wiki/Vertical_muscle_of_tongue] +xref: EMAPA:18282 +xref: FMA:46696 +xref: http://en.wikipedia.org/wiki/Vertical_muscle_of_tongue +xref: http://linkedlifedata.com/resource/umls/id/C1708562 +xref: http://www.snomedbrowser.com/Codes/Details/244793008 +xref: MA:0002329 +xref: NCIT:C52708 +xref: UMLS:C1708562 {source="ncithesaurus:Intrinsic_Tongue_Muscle_Vertical_Component"} +is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue +relationship: has_muscle_insertion UBERON:0007373 {notes="Inferior surface borders of tongue", source="dbpedia"} ! inferior surface of tongue +relationship: has_muscle_origin UBERON:0009471 {notes="Submucosal fibrous layer of dorsum of tongue", source="dbpedia"} ! dorsum of tongue + +[Term] +id: UBERON:0008585 +name: levator veli palatini +def: "The levator veli palatini is the elevator muscle of the velum palatinum in the human body. During swallowing, it contracts, elevating the soft palate to help prevent food from entering the nasopharynx. It is innervated via the pharyngeal plexus, primarily by the vagus nerve (CN X). The levator veli palatini (Levator palati) is a thick, rounded muscle situated lateral to the choanC&. It arises from the under surface of the apex of the petrous part of the temporal bone and from the medial lamina of the cartilage of the auditory tube. After passing above the upper concave margin of the Constrictor pharyngis superior it spreads out in the palatine velum, its fibers extending obliquely downward and medially to the middle line, where they blend with those of the opposite side." [http://en.wikipedia.org/wiki/Levator_veli_palatini] +synonym: "levator palati" RELATED [http://en.wikipedia.org/wiki/Levator_veli_palatini] +synonym: "levator veli" RELATED [http://en.wikipedia.org/wiki/Levator_veli_palatini] +synonym: "levator veli palatini muscle" RELATED [http://en.wikipedia.org/wiki/Levator_veli_palatini] +synonym: "levator velum palatini muscle" RELATED [http://en.wikipedia.org/wiki/Levator_veli_palatini] +synonym: "musculus levator veli palatini" RELATED LATIN [http://en.wikipedia.org/wiki/Levator_veli_palatini] +xref: FMA:46727 +xref: http://en.wikipedia.org/wiki/Levator_veli_palatini +xref: http://www.snomedbrowser.com/Codes/Details/244795001 +is_a: UBERON:0003682 {source="FMA"} ! palatal muscle +relationship: has_muscle_origin UBERON:0001678 {source="dbpedia"} ! temporal bone +relationship: in_lateral_side_of UBERON:0001733 {source="FMA-abduced-lr"} ! soft palate +relationship: innervated_by UBERON:0000929 {notes="Pharyngeal Branch of Vagus", source="dbpedia"} ! pharyngeal branch of vagus nerve + +[Term] +id: UBERON:0008586 +name: tensor veli palatini +def: "The tensor veli palatini (tensor palati) is a broad, thin, ribbon-like muscle in the head that tenses the soft palate." [http://en.wikipedia.org/wiki/Tensor_veli_palatini_muscle] +synonym: "musculus tensor veli palatini" RELATED LATIN [http://en.wikipedia.org/wiki/Tensor_veli_palatini_muscle] +synonym: "tensor palati" RELATED [http://en.wikipedia.org/wiki/Tensor_veli_palatini_muscle] +synonym: "tensor palati muscle" RELATED [http://en.wikipedia.org/wiki/Tensor_veli_palatini_muscle] +synonym: "tensor veli palatini" RELATED [http://en.wikipedia.org/wiki/Tensor_veli_palatini_muscle] +synonym: "tensor veli palatini muscle" EXACT [] +xref: FMA:46730 +xref: http://en.wikipedia.org/wiki/Tensor_veli_palatini_muscle +xref: http://www.snomedbrowser.com/Codes/Details/361815003 +is_a: UBERON:0003682 {source="FMA"} ! palatal muscle +is_a: UBERON:0018544 ! trigeminal nerve muscle +relationship: in_lateral_side_of UBERON:0001733 {source="FMA-abduced-lr"} ! soft palate +relationship: innervated_by UBERON:0000375 {notes="medial pterygoid of mandibular nerve", source="dbpedia"} ! mandibular nerve + +[Term] +id: UBERON:0008588 +name: procerus +def: "The Procerus is a small pyramidal slip of muscle deep to the superior orbital nerve, artery and vein." [http://en.wikipedia.org/wiki/Procerus_muscle] +synonym: "depressor glabellae" RELATED [http://en.wikipedia.org/wiki/Procerus_muscle] +synonym: "depressor glabellae" RELATED LATIN [http://en.wikipedia.org/wiki/Procerus_muscle] +synonym: "musculus procerus glabellae" RELATED LATIN [http://en.wikipedia.org/wiki/Procerus_muscle] +synonym: "procerus muscle" RELATED [http://en.wikipedia.org/wiki/Procerus_muscle] +synonym: "pyramidalis nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Procerus_muscle] +synonym: "pyramidalis nasi" RELATED [http://en.wikipedia.org/wiki/Procerus_muscle] +xref: FMA:46769 +xref: http://www.snomedbrowser.com/Codes/Details/244731008 +xref: Procerus:muscle +is_a: UBERON:0008522 {source="FMA"} ! nasal muscle + +[Term] +id: UBERON:0008589 +name: depressor septi nasi +def: "The depressor septi (Depressor alE nasi) arises from the incisive fossa of the maxilla. Its fibers ascend to be inserted into the nasal septum and back part of the alar part of nasalis muscle. It lies between the mucous membrane and muscular structure of the lip." [http://en.wikipedia.org/wiki/Depressor_septi_nasi_muscle] +synonym: "depressor alae nasi" RELATED [http://en.wikipedia.org/wiki/Depressor_septi_nasi_muscle] +synonym: "depressor alæ nasi" RELATED [http://en.wikipedia.org/wiki/Depressor_septi_nasi_muscle] +synonym: "depressor septi" EXACT [http://en.wikipedia.org/wiki/Depressor_septi_nasi_muscle] +synonym: "depressor septi nasi muscle" RELATED [http://en.wikipedia.org/wiki/Depressor_septi_nasi_muscle] +synonym: "musculus depressor septi nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Depressor_septi_nasi_muscle] +xref: FMA:46777 +xref: http://en.wikipedia.org/wiki/Depressor_septi_nasi_muscle +xref: http://www.snomedbrowser.com/Codes/Details/244733006 +is_a: UBERON:0008522 {source="FMA"} ! nasal muscle +relationship: has_muscle_origin UBERON:0002397 {notes="incisive fossa of the maxilla", source="dbpedia"} ! maxilla + +[Term] +id: UBERON:0008591 +name: depressor supercilii +def: "The Depressor Supercilii is an eye muscle of the human body. The nature of this muscle is in some dispute. Few printed anatomies include it (Netter, et al. ) and many authorities consider it to be part of the orbicularis oculi muscle . On the other hand, many dermatologists, ophthalmologists and plastic surgeons hold that the depressor supercilli is a distinct muscle and has a definite, individual effect on the movement of the eybrow and skin of the glabella." [http://en.wikipedia.org/wiki/Depressor_supercilii_muscle] +synonym: "depressor supercilii muscle" RELATED [http://en.wikipedia.org/wiki/Depressor_supercilii_muscle] +synonym: "musculus depressor supercilii" RELATED LATIN [http://en.wikipedia.org/wiki/Depressor_supercilii_muscle] +xref: FMA:46798 +xref: http://en.wikipedia.org/wiki/Depressor_supercilii_muscle +xref: http://www.snomedbrowser.com/Codes/Details/244728007 +is_a: UBERON:0001577 {source="FMA"} ! facial muscle +relationship: has_muscle_insertion UBERON:0001697 {notes="Medial aspect of bony orbit", source="dbpedia"} ! orbit of skull + +[Term] +id: UBERON:0008592 +name: levator labii superioris alaeque nasi +def: "The levator labii superioris alaeque nasi muscle is, translated from Latin, the 'lifter of the upper lip and of the wing of the nose'. It has the longest name of any muscle in an animal." [http://en.wikipedia.org/wiki/Levator_labii_superioris_alaeque_nasi_muscle] +synonym: "alaeque" RELATED [http://en.wikipedia.org/wiki/Levator_labii_superioris_alaeque_nasi_muscle] +synonym: "elvis muscle" RELATED [http://en.wikipedia.org/wiki/Levator_labii_superioris_alaeque_nasi_muscle] +synonym: "levator labii superioris alaequae nasi muscle" RELATED [http://en.wikipedia.org/wiki/Levator_labii_superioris_alaeque_nasi_muscle] +synonym: "levator labii superioris alaeque nasi" RELATED [http://en.wikipedia.org/wiki/Levator_labii_superioris_alaeque_nasi_muscle] +synonym: "musculus levator labii superioris alaequae nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Levator_labii_superioris_alaeque_nasi_muscle] +xref: FMA:46802 +xref: http://en.wikipedia.org/wiki/Levator_labii_superioris_alaeque_nasi_muscle +is_a: UBERON:0001577 {source="FMA"} ! facial muscle +relationship: has_muscle_insertion UBERON:0001834 {notes="nostril and upper lip", source="dbpedia"} ! upper lip +relationship: has_muscle_insertion UBERON:0006906 ! ala of nose +relationship: has_muscle_origin UBERON:0002397 {source="dbpedia"} ! maxilla + +[Term] +id: UBERON:0008593 +name: zygomaticus major muscle +def: "Facial muscle attached to the modiolus, corner (angle) of the mouth, and zygomatic bone. See Diogo 2008; Diogo et al., 2009; Burrows et al.., 2011., also DuBrul, 1980." [MFMO:0000138] +subset: feed_aligned +synonym: "auriculolabialis superior" RELATED [MFMO:0000138] +synonym: "musculus zygomaticus major" RELATED LATIN [http://en.wikipedia.org/wiki/Zygomaticus_major_muscle] +synonym: "zygomatic major" RELATED [http://en.wikipedia.org/wiki/Zygomaticus_major_muscle] +synonym: "zygomatic major muscle" RELATED [http://en.wikipedia.org/wiki/Zygomaticus_major_muscle] +synonym: "zygomatic muscle" EXACT [MFMO:0000138] +synonym: "zygomaticcus major" RELATED [http://en.wikipedia.org/wiki/Zygomaticus_major_muscle] +synonym: "zygomaticus major" RELATED [http://en.wikipedia.org/wiki/Zygomaticus_major_muscle] +xref: FMA:46810 +xref: http://en.wikipedia.org/wiki/Zygomaticus_major_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224115 +xref: http://www.snomedbrowser.com/Codes/Details/244739005 +xref: http://www.snomedbrowser.com/Codes/Details/244740007 +xref: MFMO:0000138 +xref: NCIT:C53183 +xref: UMLS:C0224115 {source="ncithesaurus:Zygomaticus_Major"} +is_a: UBERON:0010437 {is_inferred="true"} ! zygomaticus muscle +intersection_of: UBERON:0001577 ! facial muscle +intersection_of: attaches_to UBERON:0001683 ! jugal bone +intersection_of: attaches_to UBERON:0011386 ! facial modiolus +intersection_of: attaches_to UBERON:0018149 ! angle of oral opening +intersection_of: dorsal_to UBERON:0005467 ! platysma +intersection_of: ventral_to UBERON:0008594 ! zygomaticus minor muscle +relationship: attaches_to UBERON:0001683 ! jugal bone +relationship: attaches_to UBERON:0011386 ! facial modiolus +relationship: attaches_to UBERON:0018149 ! angle of oral opening +relationship: dorsal_to UBERON:0005467 ! platysma +relationship: has_muscle_insertion UBERON:0011386 ! facial modiolus +relationship: ventral_to UBERON:0008594 ! zygomaticus minor muscle + +[Term] +id: UBERON:0008594 +name: zygomaticus minor muscle +def: "Facial muscle attached to the modiolus, corner (angle) of the mouth, and zygomatic bone. This muscle is ventral to the zygomaticus minor and dorsal to the platysma muscle. In many mammals this muscle also has an attachment to the cartilage of the external ear, in which case it is called the auriculolabialis inferior. See Diogo 2008; Diogo et al., 2009; Burrows et al.., 2011., also DuBrul, 1980." [MFMO:0000138] +subset: feed_aligned +synonym: "auriculolabialis superior" NARROW [] +synonym: "auriculolabialis superior" RELATED [MFMO:0000137] +synonym: "musculus quadratus labii superioris, zygomatic head" EXACT [MFMO:0000137] +synonym: "musculus zygomaticus minor" EXACT [MFMO:0000137] +synonym: "square muscle of the upper lip, zygomatic head" EXACT [MFMO:0000137] +xref: FMA:46811 +xref: http://en.wikipedia.org/wiki/Zygomaticus_minor_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224116 +xref: http://www.snomedbrowser.com/Codes/Details/244741006 +xref: MFMO:0000137 +xref: NCIT:C53184 +xref: UMLS:C0224116 {source="ncithesaurus:Zygomaticus_Minor"} +is_a: UBERON:0010437 ! zygomaticus muscle +intersection_of: UBERON:0001577 ! facial muscle +intersection_of: attaches_to UBERON:0010933 ! orbicularis oris muscle +intersection_of: attaches_to UBERON:0011386 ! facial modiolus +intersection_of: attaches_to UBERON:0018265 ! anterior root of zygomatic arch +intersection_of: dorsal_to UBERON:0002097 ! skin of body +intersection_of: dorsal_to UBERON:0008593 ! zygomaticus major muscle +relationship: attaches_to UBERON:0010933 ! orbicularis oris muscle +relationship: attaches_to UBERON:0011386 ! facial modiolus +relationship: attaches_to UBERON:0018265 ! anterior root of zygomatic arch +relationship: dorsal_to UBERON:0002097 ! skin of body +relationship: dorsal_to UBERON:0008593 ! zygomaticus major muscle + +[Term] +id: UBERON:0008595 +name: levator anguli oris +def: "The levator anguli oris (caninus) is a facial muscle of the mouth arising from the canine fossa, immediately below the infraorbital foramen. Its fibers are inserted into the angle of the mouth, intermingling with those of the Zygomaticus, Triangularis, and Orbicularis oris." [http://en.wikipedia.org/wiki/Levator_anguli_oris_muscle] +synonym: "caninus" RELATED [http://en.wikipedia.org/wiki/Levator_anguli_oris] +synonym: "caninus muscle" RELATED [http://en.wikipedia.org/wiki/Levator_anguli_oris] +synonym: "levator anguli oris" RELATED [http://en.wikipedia.org/wiki/Levator_anguli_oris] +synonym: "levator anguli oris muscle" EXACT [http://en.wikipedia.org/wiki/Levator_anguli_oris] +synonym: "musculus levator anguli oris" RELATED [http://en.wikipedia.org/wiki/Levator_anguli_oris] +xref: FMA:46822 +xref: http://en.wikipedia.org/wiki/Levator_anguli_oris_muscle +xref: http://www.snomedbrowser.com/Codes/Details/141501002 +is_a: UBERON:0001577 {source="FMA"} ! facial muscle +relationship: has_muscle_insertion UBERON:0011386 ! facial modiolus +relationship: has_muscle_origin UBERON:0002397 {source="dbpedia"} ! maxilla + +[Term] +id: UBERON:0008596 +name: mentalis muscle +def: "A muscle of facial expression, innervated by the facial nerve, attached to the skin of the lower lip and inferior to the lower lip (in humans this region is called the chin or mental region), the orbicularis oris muscle, and the mandible in the symphyseal region. See Diogo et al., 2009; Burrows et al., 2011)" [MFMO:0000122] +synonym: "mentalis" EXACT [MFMO:0000122] +synonym: "musculus mentalis" EXACT LATIN [http://en.wikipedia.org/wiki/Mentalis] +xref: FMA:46825 +xref: http://en.wikipedia.org/wiki/Mentalis +xref: http://www.snomedbrowser.com/Codes/Details/244744003 +xref: MFMO:0000122 +is_a: UBERON:0001577 {source="MFMO"} ! facial muscle +is_a: UBERON:0013765 ! digestive system element +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0001577 ! facial muscle +intersection_of: attaches_to UBERON:0001835 ! lower lip +intersection_of: attaches_to UBERON:0010933 ! orbicularis oris muscle +intersection_of: attaches_to UBERON:0018542 ! mandibular symphyseal region +relationship: attaches_to UBERON:0001835 ! lower lip +relationship: attaches_to UBERON:0010933 ! orbicularis oris muscle +relationship: attaches_to UBERON:0018542 ! mandibular symphyseal region +relationship: has_muscle_insertion UBERON:0008199 {source="dbpedia"} ! chin +relationship: has_muscle_origin UBERON:0001684 {source="dbpedia"} ! mandible +relationship: in_lateral_side_of UBERON:0008199 {source="FMA-abduced-lr"} ! chin +relationship: part_of UBERON:0008199 ! chin + +[Term] +id: UBERON:0008597 +name: depressor anguli oris muscle +def: "The Depressor anguli oris (Triangularis) arises from the oblique line of the mandible, whence its fibers converge, to be inserted, by a narrow fasciculus, into the angle of the mouth." [http://en.wikipedia.org/wiki/Depressor_anguli_oris_muscle] +synonym: "depressor anguli oris" RELATED [http://en.wikipedia.org/wiki/Depressor_anguli_oris_muscle] +synonym: "musculus depressor anguli oris" RELATED LATIN [http://en.wikipedia.org/wiki/Depressor_anguli_oris_muscle] +synonym: "triangularis" RELATED [http://en.wikipedia.org/wiki/Depressor_anguli_oris_muscle] +synonym: "triangularis muscle" RELATED [http://en.wikipedia.org/wiki/Depressor_anguli_oris_muscle] +xref: EMAPA:37842 {source="MA:th"} +xref: FMA:46828 +xref: http://en.wikipedia.org/wiki/Depressor_anguli_oris_muscle +xref: http://www.snomedbrowser.com/Codes/Details/361812000 +is_a: UBERON:0001577 {source="FMA"} ! facial muscle +relationship: has_muscle_insertion UBERON:0011386 {notes="modiolus of mouth", source="dbpedia"} ! facial modiolus +relationship: has_muscle_origin UBERON:0001684 {notes="tubercle of mandible", source="dbpedia"} ! mandible + +[Term] +id: UBERON:0008598 +name: risorius muscle +def: "Facial muscle that attaches to the fascia of the masseter muscle and the facia of the skin in the region of the corner (angle) of the mouth. Even in species in which this muscle is present, it is highly variable. A true risorius muscle may only be present in Hominins (humans and great apes). See Diogo 2008; Diogo et al., 2009; Burrows et al.., 2011., also DuBrul, 1980." [MFMO:0000141] +subset: feed_aligned +synonym: "musculus risorius" EXACT LATIN [http://en.wikipedia.org/wiki/Risorius] +synonym: "risorius" EXACT [MFMO:0000141] +xref: FMA:46838 +xref: http://en.wikipedia.org/wiki/Risorius +xref: http://www.snomedbrowser.com/Codes/Details/244755003 +xref: MFMO:0000141 +is_a: UBERON:0001577 {source="MFMO"} ! facial muscle +intersection_of: UBERON:0001577 ! facial muscle +intersection_of: attaches_to UBERON:0001597 ! masseter muscle +intersection_of: attaches_to UBERON:0002097 ! skin of body +intersection_of: dorsal_to UBERON:0005467 ! platysma +intersection_of: ventral_to UBERON:0008593 ! zygomaticus major muscle +relationship: attaches_to UBERON:0001597 ! masseter muscle +relationship: attaches_to UBERON:0002097 ! skin of body +relationship: dorsal_to UBERON:0005467 ! platysma +relationship: has_muscle_insertion UBERON:0011386 ! facial modiolus +relationship: ventral_to UBERON:0008593 ! zygomaticus major muscle + +[Term] +id: UBERON:0008603 +name: helicis major +def: "The Helicis major is a narrow vertical band situated upon the anterior margin of the helix. It arises below, from the spina helicis, and is inserted into the anterior border of the helix, just where it is about to curve backward." [http://en.wikipedia.org/wiki/Helicis_major] +synonym: "helicis major muscle" RELATED [] +synonym: "musculus helicis major" EXACT LATIN [http://en.wikipedia.org/wiki/Helicis_major] +xref: FMA:48968 +xref: Helicis:major +xref: http://www.snomedbrowser.com/Codes/Details/244764008 +is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle + +[Term] +id: UBERON:0008604 +name: helicis minor +def: "The Helicis minor is an oblique fasciculus, covering the crus helicis." [http://en.wikipedia.org/wiki/Helicis_minor] +synonym: "helicis minor muscle" RELATED [] +synonym: "musculus helicis minor" RELATED LATIN [http://en.wikipedia.org/wiki/Helicis_minor] +xref: FMA:48971 +xref: Helicis:minor +xref: http://www.snomedbrowser.com/Codes/Details/244765009 +is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle + +[Term] +id: UBERON:0008605 +name: tragicus muscle +def: "The Tragicus is a short, flattened vertical band on the lateral surface of the tragus." [http://en.wikipedia.org/wiki/Tragicus] +synonym: "musculus tragicus" RELATED LATIN [http://en.wikipedia.org/wiki/Tragicus] +synonym: "tragicus" EXACT [FMA:48974] +synonym: "tragicus muscle" RELATED [] +xref: FMA:48974 +xref: http://en.wikipedia.org/wiki/Tragicus +xref: http://www.snomedbrowser.com/Codes/Details/244766005 +is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle + +[Term] +id: UBERON:0008606 +name: antitragicus muscle +def: "The Antitragicus arises from the outer part of the antitragus, and is inserted into the cauda helicis and antihelix." [http://en.wikipedia.org/wiki/Antitragicus] +synonym: "antitragicus" EXACT [FMA:48980] +synonym: "antitragicus muscle" RELATED [] +synonym: "musculus antitragicus" RELATED LATIN [http://en.wikipedia.org/wiki/Antitragicus] +xref: FMA:48980 +xref: http://en.wikipedia.org/wiki/Antitragicus +xref: http://www.snomedbrowser.com/Codes/Details/63899000 +is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle + +[Term] +id: UBERON:0008607 +name: transverse muscle of auricle +def: "The transverse muscle of auricle is placed on the cranial surface of the pinna. It consists of scattered fibers, partly tendinous and partly muscular, extending from the eminentia conchae to the prominence corresponding with the scapha." [http://en.wikipedia.org/wiki/Transverse_muscle_of_auricle] +synonym: "musculus transversus auriculae" RELATED LATIN [http://en.wikipedia.org/wiki/Transverse_muscle_of_auricle] +synonym: "transverse muscle of pinna" EXACT [FMA:48983] +synonym: "transversus auriculae" EXACT [http://en.wikipedia.org/wiki/Transverse_muscle_of_auricle] +synonym: "transversus auricularis" EXACT [FMA:48983] +xref: FMA:48983 +xref: http://en.wikipedia.org/wiki/Transverse_muscle_of_auricle +xref: http://www.snomedbrowser.com/Codes/Details/244767001 +is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle + +[Term] +id: UBERON:0008608 +name: oblique muscle of auricle +def: "The oblique muscle of auricle, on the cranial surface, consists of a few fibers extending from the upper and back part of the concha to the convexity immediately above it." [http://en.wikipedia.org/wiki/Oblique_muscle_of_auricle] +synonym: "musculus obliquus auriculae" RELATED LATIN [http://en.wikipedia.org/wiki/Oblique_muscle_of_auricle] +synonym: "oblique muscle of pinna" EXACT [FMA:48986] +synonym: "obliquus auriculae" EXACT [http://en.wikipedia.org/wiki/Oblique_muscle_of_auricle] +synonym: "obliquus auricularis muscle" EXACT [FMA:48986] +synonym: "obliquus auriculæ" RELATED [http://en.wikipedia.org/wiki/Oblique_muscle_of_auricle] +xref: FMA:48986 +xref: http://en.wikipedia.org/wiki/Oblique_muscle_of_auricle +xref: http://www.snomedbrowser.com/Codes/Details/244768006 +is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle + +[Term] +id: UBERON:0008609 +name: transversus menti muscle +def: "The transversus menti, or transverse muscle of the chin, is a facial muscle that is often considered to be the superficial fibers of the depressor anguli oris muscle which cross to the other side of the face." [http://en.wikipedia.org/wiki/Transverse_muscle_of_the_chin] +synonym: "musculus transversus menti" RELATED LATIN [http://en.wikipedia.org/wiki/Transverse_muscle_of_the_chin] +synonym: "transverse menti" EXACT [FMA:49080] +synonym: "transversus menti" RELATED [http://en.wikipedia.org/wiki/Transverse_muscle_of_the_chin] +xref: FMA:49080 +xref: http://en.wikipedia.org/wiki/Transverse_muscle_of_the_chin +is_a: UBERON:0001577 {source="FMA"} ! facial muscle + +[Term] +id: UBERON:0008611 +name: scalene muscle +def: "Any of the three pairs of muscles in the lateral neck, namely the scalenus anterior, scalenus medius, and scalenus posterior. They are innervated by the spinal nerves C4-C8[WP]." [http://en.wikipedia.org/wiki/Scalene_muscles] +synonym: "lateral cervical muscle" RELATED [http://en.wikipedia.org/wiki/Scalene_muscles] +synonym: "lateral cervical muscles" RELATED [http://en.wikipedia.org/wiki/Scalene_muscles] +synonym: "lateral vertebral muscle" RELATED [http://en.wikipedia.org/wiki/Scalene_muscles] +synonym: "m scalenus" RELATED [http://en.wikipedia.org/wiki/Scalene_muscles] +synonym: "scalene muscle" RELATED [http://en.wikipedia.org/wiki/Scalene_muscles] +synonym: "scalene muscles" EXACT [http://en.wikipedia.org/wiki/Scalene_muscles] +synonym: "scalenes" RELATED [http://en.wikipedia.org/wiki/Scalene_muscles] +synonym: "scaleneus" RELATED [http://en.wikipedia.org/wiki/Scalene_muscles] +synonym: "scaleni" RELATED [http://en.wikipedia.org/wiki/Scalene_muscles] +synonym: "scalenus" RELATED [http://en.wikipedia.org/wiki/Scalene_muscles] +synonym: "scalenus muscle" EXACT [FMA:64829] +xref: FMA:64829 +xref: http://linkedlifedata.com/resource/umls/id/C0448350 +xref: http://www.snomedbrowser.com/Codes/Details/244843003 +xref: NCIT:C33517 +xref: Scalene:muscles +xref: UMLS:C0448350 {source="ncithesaurus:Scalene_Muscle"} +is_a: UBERON:0002377 {source="FMA"} ! muscle of neck +is_a: UBERON:0003897 ! axial muscle +is_a: UBERON:0004518 ! muscle of vertebral column +relationship: has_muscle_insertion UBERON:0004601 {notes="first and second ribs", source="dbpedia"} ! rib 1 +relationship: has_muscle_insertion UBERON:0004602 {notes="first and second ribs", source="dbpedia"} ! rib 2 +relationship: has_muscle_origin UBERON:0002413 {source="dbpedia"} ! cervical vertebra + +[Term] +id: UBERON:0008612 +name: muscle of pelvic diaphragm +def: "A muscular partition formed by the levatores ani and coccygei, with which may be included the parietal pelvic fascia on their upper and lower aspects. It separates the pelvic cavity above from the perineal region below." [http://www.dartmouth.edu/~humananatomy/part_6/chapter_37.html] +synonym: "diaphragm of the pelvis" RELATED [http://en.wikipedia.org/wiki/Pelvic_floor] +synonym: "diaphragma pelvis" RELATED LATIN [http://en.wikipedia.org/wiki/Pelvic_floor] +synonym: "muscle of pelvic floor" EXACT [FMA:64856] +synonym: "pelvic diaphragm" RELATED [http://en.wikipedia.org/wiki/Pelvic_floor] +synonym: "pelvic diaphragm muscle" EXACT [FMA:64856] +synonym: "pelvic floor muscles" RELATED [http://en.wikipedia.org/wiki/Pelvic_floor] +synonym: "pelvic muscles" RELATED [http://en.wikipedia.org/wiki/Pelvic_floor] +xref: FMA:64856 +xref: http://linkedlifedata.com/resource/umls/id/C0932441 +xref: http://www.snomedbrowser.com/Codes/Details/367748001 +xref: NCIT:C33290 +xref: Pelvic:floor +xref: UMLS:C0932441 {source="ncithesaurus:Pelvic_Floor_Muscle"} +is_a: UBERON:0001325 {source="FMA"} ! muscle of pelvis + +[Term] +id: UBERON:0008617 +name: innermost intercostal muscle +def: "The Innermost intercostal muscle is a layer of intercostal muscle beneath the intercostal nerves and internal intercostal muscles. These are divided into transversus thoracis anteriorly, lateral muscle slips laterally and subcostalis posteriorly." [http://en.wikipedia.org/wiki/Innermost_intercostal_muscle] +synonym: "musculus intercostalis intimus" RELATED [http://en.wikipedia.org/wiki/Innermost_intercostal_muscle] +synonym: "musculus intercostalis intimus" RELATED LATIN [http://en.wikipedia.org/wiki/Innermost_intercostal_muscle] +xref: FMA:9758 +xref: http://en.wikipedia.org/wiki/Innermost_intercostal_muscle +xref: http://www.snomedbrowser.com/Codes/Details/368054008 +is_a: UBERON:0001111 {source="FMA"} ! intercostal muscle + +[Term] +id: UBERON:0008618 +name: subcostal muscle +def: "The Subcostales (Infracostales) consist of muscular and aponeurotic fasciculi, which are usually well-developed only in the lower part of the thorax; each originates from the inner surface of one rib, and is inserted into the inner surface of the second or third rib above, near its angle. Their fibers run in the same direction as those of the Intercostales interni." [http://en.wikipedia.org/wiki/Subcostalis_muscle] +synonym: "musculus subcostalis" RELATED LATIN [http://en.wikipedia.org/wiki/Subcostalis_muscle] +synonym: "subcostal muscles" RELATED [http://en.wikipedia.org/wiki/Subcostalis_muscle] +synonym: "subcostales" RELATED [http://en.wikipedia.org/wiki/Subcostalis_muscle] +synonym: "subcostales muscle" RELATED [http://en.wikipedia.org/wiki/Subcostalis_muscle] +synonym: "subcostales muscles" RELATED [http://en.wikipedia.org/wiki/Subcostalis_muscle] +synonym: "subcostalis" RELATED [http://en.wikipedia.org/wiki/Subcostalis_muscle] +xref: FMA:9759 +xref: http://www.snomedbrowser.com/Codes/Details/244914005 +xref: Subcostalis:muscle +is_a: UBERON:0002426 {source="FMA"} ! chest muscle +relationship: has_muscle_insertion UBERON:0002228 {notes="inner surface of the second or third rib below near its angle", source="dbpedia"} ! rib +relationship: has_muscle_origin UBERON:0002228 {notes="inner surface of one rib", source="dbpedia"} ! rib +relationship: innervated_by UBERON:0003727 {source="dbpedia"} ! intercostal nerve + +[Term] +id: UBERON:0008622 +name: scalenus anterior +def: "The Scalenus anterior (Scalenus anticus), also known as anterior scalene muscle, lies deeply at the side of the neck, behind the Sternocleidomastoideus. It arises from the anterior tubercles of the transverse processes of the third, fourth, fifth, and sixth cervical vertebrC&, and descending, almost vertically, is inserted by a narrow, flat tendon into the scalene tubercle on the inner border of the first rib, and into the ridge on the upper surface of the rib in front of the subclavian groove." [http://en.wikipedia.org/wiki/Scalenus_anterior] +synonym: "anterior scalene" EXACT [http://en.wikipedia.org/wiki/Scalenus_anterior] +synonym: "musculus scalenus anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Scalenus_anterior] +synonym: "scalenus anterior muscle" RELATED [http://en.wikipedia.org/wiki/Scalenus_anterior] +synonym: "scalenus anticus" RELATED [http://en.wikipedia.org/wiki/Scalenus_anterior] +xref: FMA:13385 +xref: http://www.snomedbrowser.com/Codes/Details/181742002 +xref: Scalenus:anterior +is_a: UBERON:0008611 {source="FMA"} ! scalene muscle + +[Term] +id: UBERON:0008712 +name: stylohyoid muscle +def: "The stylohyoid is a pharyngeal arch II muscle that participates in oral/pharygeal behaviors and is innervated by the stylohoid branch of the facial nerve and attaches to the stylohyal and the non-stylohyal part of the hyoid apparatus." [MFMO:0000061] +synonym: "musculus stylohyoideus" RELATED LATIN [http://en.wikipedia.org/wiki/Stylohyoid_muscle] +synonym: "stylohyoid" RELATED [http://en.wikipedia.org/wiki/Stylohyoid_muscle] +synonym: "stylohyoideus" RELATED [http://en.wikipedia.org/wiki/Stylohyoid_muscle] +synonym: "stylohyoideus muscle" RELATED [http://en.wikipedia.org/wiki/Stylohyoid_muscle] +synonym: "stylohyoideus muscles" RELATED [http://en.wikipedia.org/wiki/Stylohyoid_muscle] +xref: FMA:9625 +xref: http://www.snomedbrowser.com/Codes/Details/244826001 +xref: MFMO:0000061 +xref: Stylohyoid:muscle +is_a: UBERON:0008571 {source="FMA"} ! suprahyoid muscle +relationship: has_muscle_insertion UBERON:0003997 {notes="greater cornu of hyoid bone", source="dbpedia"} ! hyoid bone greater horn +relationship: has_muscle_origin UBERON:0003960 {source="dbpedia"} ! styloid process of temporal bone +relationship: innervated_by UBERON:0001647 {source="dbpedia"} ! facial nerve + +[Term] +id: UBERON:0008713 +name: pectoral girdle and thoracic body wall skeletal muscle +xref: EHDAA2:0001421 +xref: EMAPA:17748 +xref: RETIRED_EHDAA2:0001422 +is_a: UBERON:0001134 ! skeletal muscle tissue + +[Term] +id: UBERON:0008715 +name: muscle tissue of prostate +def: "A muscle tissue that is part of a prostate gland." [OBOL:automatic] +synonym: "prostate gland muscle tissue" EXACT [OBOL:automatic] +synonym: "prostate muscle tissue" EXACT [OBOL:automatic] +synonym: "prostatic muscle" EXACT [] +synonym: "prostatic musclular tissue" EXACT [] +xref: http://linkedlifedata.com/resource/umls/id/C1183911 +xref: http://www.snomedbrowser.com/Codes/Details/251498008 +xref: NCIT:C13100 +xref: UMLS:C1183911 {source="ncithesaurus:Prostatic_Muscular_Tissue"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0002385 ! muscle tissue +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0002385 ! muscle tissue +intersection_of: part_of UBERON:0002367 ! prostate gland +relationship: part_of UBERON:0002367 ! prostate gland + +[Term] +id: UBERON:0008716 +name: hilum of kidney +def: "An opening on medial margin of the kidney leading into the renal sinus. he renal vessels enter/leave the kidney at the hilum; the renal pelvis leaves the kidney at the hilum." [http://anatomy.uams.edu/anatomyhtml/kidney.html] +synonym: "hilar area of the kidney" EXACT [] +synonym: "renal hilum" EXACT [FMA:15610] +xref: FMA:15610 +xref: galen:HilumOfKidney +xref: http://en.wikipedia.org/wiki/Hilum_of_kidney +xref: http://linkedlifedata.com/resource/umls/id/C0227608 +xref: http://www.snomedbrowser.com/Codes/Details/279370006 +xref: NCIT:C32740 +xref: UMLS:C0227608 {source="ncithesaurus:Hilar_Area_of_the_Kidney"} +is_a: UBERON:0004885 ! hilum +intersection_of: UBERON:0004885 ! hilum +intersection_of: part_of UBERON:0002113 ! kidney +relationship: part_of UBERON:0002113 ! kidney + +[Term] +id: UBERON:0008772 +name: proximal epiphysis of tibia +def: "A proximal epiphysis that is part of a tibia." [OBOL:automatic] +subset: pheno_slim +synonym: "head of tibia" EXACT [FMA:33113] +synonym: "proximal end of tibia" EXACT [FMA:33113] +synonym: "proximal tibial epiphysis" EXACT [] +synonym: "upper end of tibia" EXACT [FMA:33113] +xref: FMA:33113 +xref: http://en.wikipedia.org/wiki/Upper_extremity_of_tibia +xref: http://linkedlifedata.com/resource/umls/id/C0932431 +xref: http://www.snomedbrowser.com/Codes/Details/302526005 +xref: NCIT:C32722 +xref: UMLS:C0932431 {source="ncithesaurus:Head_of_the_Tibia"} +is_a: UBERON:0004380 ! proximal epiphysis +is_a: UBERON:0004383 ! epiphysis of tibia +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0000979 ! tibia + +[Term] +id: UBERON:0008775 +name: proximal epiphysis of fibula +def: "A proximal epiphysis that is part of a fibula." [OBOL:automatic] +subset: pheno_slim +synonym: "caput fibulae" EXACT LATIN [http://en.wikipedia.org/wiki/Head_of_fibula] +synonym: "fibular head" RELATED [FMA:33729] +synonym: "head of fibula" EXACT [FMA:33729] +synonym: "proximal end of fibula" EXACT [FMA:33729] +synonym: "upper end of fibula" EXACT [FMA:33729] +xref: EMAPA:37890 {source="MA:th"} +xref: FMA:33729 +xref: galen:HeadOfFibula +xref: http://en.wikipedia.org/wiki/Head_of_fibula +xref: http://linkedlifedata.com/resource/umls/id/C0223908 +xref: http://www.snomedbrowser.com/Codes/Details/182080006 +xref: NCIT:C32719 +xref: UMLS:C0223908 {source="ncithesaurus:Head_of_the_Fibula"} +is_a: UBERON:0004380 ! proximal epiphysis +is_a: UBERON:0004388 ! epiphysis of fibula +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0001446 ! fibula + +[Term] +id: UBERON:0008776 +name: inner cell mass derived hypoblast +alt_id: UBERON:0000417 +alt_id: UBERON:0003225 +alt_id: UBERON:0003226 +def: "A thin monolayer of small cuboidal cells that make up the lower layer of the bilaminar embryonic disc, beneath the epiblast." [MP:0011183] +subset: early_development +subset: pheno_slim +synonym: "hypoblast" RELATED SENSU [GO:0090008, ISBN:9780878932504, VHOG:0001222] +synonym: "primary endoderm" RELATED [MP:0011185] +synonym: "primitive endoderm" EXACT [ISBN:9780878932504, MP:0011185] +synonym: "proximal endoderm" RELATED [EMAPA:16051] +synonym: "visceral endoderm" RELATED [ISBN:9780878932504] +xref: BTO:0002123 +xref: EHDAA2:0000796 +xref: EHDAA:44 +xref: EHDAA:79 +xref: EMAPA:16051 +xref: FMA:85520 +xref: http://en.wikipedia.org/wiki/Hypoblast +is_a: UBERON:0000089 ! hypoblast (generic) +relationship: adjacent_to UBERON:0002532 ! epiblast (generic) +relationship: develops_from UBERON:0000087 {source="Wikipedia"} ! inner cell mass +relationship: part_of UBERON:0000091 ! bilaminar disc + +[Term] +id: UBERON:0008777 +name: hypaxial musculature +def: "Musculature that is derived from the hypaxial myotome region, trunk muscles that lie ventral to the horizontal septum of the vertebrae. Hypaxial muscles include some vertebral muscles, the diaphragm, the abdominal muscles, and all limb muscles." [http://en.wikipedia.org/wiki/Epaxial_and_Hypaxial_muscles] +synonym: "hypaxial muscle" RELATED [XAO:0003228] +synonym: "hypaxial muscles" EXACT PLURAL [] +xref: AAO:0000228 +xref: EMAPA:37852 {source="MA:th"} +xref: http://en.wikipedia.org/wiki/Epaxial_and_Hypaxial_muscles +xref: XAO:0003228 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004479 ! musculature of trunk +intersection_of: UBERON:0001015 ! musculature +intersection_of: develops_from UBERON:0003895 ! hypaxial myotome region +relationship: develops_from UBERON:0003895 ! hypaxial myotome region +relationship: innervated_by UBERON:0006838 ! ventral ramus of spinal nerve +relationship: part_of UBERON:0001774 {source="XAO"} ! skeletal muscle of trunk + +[Term] +id: UBERON:0008778 +name: epaxial musculature +def: "Musculature that is derived from the epaxial myotome region, ventral to the horizontal septum of the vertebrae. Epaxial muscles include other (dorsal) muscles associated with the vertebrae, ribs, and base of the skull." [http://en.wikipedia.org/wiki/Epaxial_and_hypaxial_muscles, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "epaxial muscle" RELATED [XAO:0003229] +synonym: "epaxial muscles" EXACT PLURAL [] +xref: AAO:0000142 +xref: EMAPA:37851 {source="MA:th"} +xref: XAO:0003229 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004479 ! musculature of trunk +intersection_of: UBERON:0001015 ! musculature +intersection_of: develops_from UBERON:0003900 ! epaxial myotome region +relationship: develops_from UBERON:0003900 ! epaxial myotome region +relationship: innervated_by UBERON:0006839 ! dorsal ramus of spinal nerve +relationship: part_of UBERON:0001774 {source="XAO"} ! skeletal muscle of trunk + +[Term] +id: UBERON:0008779 +name: subclavius +def: "The Subclavius is a small triangular muscle, placed between the clavicle and the first rib. Along with the pectoralis major and pectoralis minor muscles, the subclavius muscle makes up the anterior wall of the axilla." [http://en.wikipedia.org/wiki/Subclavius_muscle] +synonym: "musculus subclavius" RELATED LATIN [http://en.wikipedia.org/wiki/Subclavius_muscle] +synonym: "subclavicular muscle" RELATED [http://en.wikipedia.org/wiki/Subclavius_muscle] +xref: FMA:13410 +xref: http://linkedlifedata.com/resource/umls/id/C0224348 +xref: NCIT:C33644 +xref: Subclavius:muscle +xref: UMLS:C0224348 {source="ncithesaurus:Subclavius"} +is_a: UBERON:0001495 {source="FMA"} ! pectoral muscle +relationship: has_muscle_insertion UBERON:0001105 {notes="subclavian groove of clavicle", source="dbpedia"} ! clavicle bone +relationship: has_muscle_origin UBERON:0004601 {source="dbpedia"} ! rib 1 + +[Term] +id: UBERON:0008780 +name: inner cell mass derived epiblast +def: "An embryonic structure that is derived from the inner cell mass and lies above the hypoblast and gives rise to the three primary germ layers" [MP:0003886] +comment: The epiblast cells (appearing on day 8 of human embryonic development) make up a columnar epithelium with dense microvilli on the apical surface. During gastrulation, the epiblast cells undergo epithelial-to-mesenchymal transition and delaminate to become the loose mesenchyme of the primitive streak. The epiblast is present in postimplantation mouse embryos between E5.5-E7.5. +subset: early_development +subset: pheno_slim +synonym: "embryonic epiblast" RELATED [MP:0003886] +xref: EHDAA2:0000444 +xref: EHDAA:42 +xref: EHDAA:75 +xref: EMAPA:16050 +xref: http://linkedlifedata.com/resource/umls/id/C1516906 +xref: NCIT:C34164 +xref: UMLS:C1516906 {source="ncithesaurus:Epiblast"} +is_a: UBERON:0002532 ! epiblast (generic) +intersection_of: UBERON:0002532 ! epiblast (generic) +intersection_of: develops_from UBERON:0000087 ! inner cell mass +relationship: develops_from UBERON:0000087 {source="Wikipedia"} ! inner cell mass +relationship: part_of UBERON:0000091 ! bilaminar disc + +[Term] +id: UBERON:0008781 +name: blastodisc derived epiblast +def: "An epiblast (generic) that develops_from a blastodisc." [OBOL:automatic] +subset: early_development +xref: TAO:0000018 +xref: ZFA:0000018 +is_a: UBERON:0002532 ! epiblast (generic) +intersection_of: UBERON:0002532 ! epiblast (generic) +intersection_of: develops_from UBERON:0004749 ! blastodisc +relationship: develops_from UBERON:0004749 {source="Wikipedia"} ! blastodisc +relationship: dubious_for_taxon NCBITaxon:40674 +relationship: part_of UBERON:0002541 {source="ZFA"} ! germ ring + +[Term] +id: UBERON:0008783 +name: dorsal venous arch +def: "The dorsal venous arch of the foot is a superficial vein that connects the small saphenous vein and the great saphenous vein. Anatomically, it is defined by where the dorsal veins of the first and fifth digit, respectively, meet the great saphenous vein and small saphenous vein." [http://en.wikipedia.org/wiki/Dorsal_venous_arch_of_the_foot] +synonym: "arcus venosus dorsalis pedis" EXACT [http://en.wikipedia.org/wiki/Dorsal_venous_arch_of_the_foot] +synonym: "arcus venosus dorsalis pedis" RELATED LATIN [http://en.wikipedia.org/wiki/Dorsal_venous_arch_of_the_foot] +synonym: "dorsal venous arch of foot" EXACT [FMA:44356] +xref: EMAPA:37521 {source="MA:th"} +xref: FMA:44356 +xref: http://en.wikipedia.org/wiki/Dorsal_venous_arch_of_the_foot +xref: http://www.snomedbrowser.com/Codes/Details/231189006 +xref: MA:0002110 +is_a: UBERON:0001638 {source="MA"} ! vein + +[Term] +id: UBERON:0008784 +name: lower limb segment +def: "A limb segment that is part of a hindlimb." [OBOL:automatic] +synonym: "free lower limb segment" EXACT [FMA:24877] +synonym: "free lower limb subdivision" EXACT [FMA:24877] +synonym: "segment of free lower limb" EXACT [FMA:24877] +synonym: "subdivision of free lower limb" EXACT [FMA:24877] +xref: FMA:24877 +is_a: UBERON:0002529 ! limb segment +intersection_of: UBERON:0002529 ! limb segment +intersection_of: part_of UBERON:0002103 ! hindlimb +relationship: part_of UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0008785 +name: upper limb segment +def: "A limb segment that is part of a forelimb." [OBOL:automatic] +synonym: "free upper limb segment" EXACT [FMA:24876] +synonym: "free upper limb subdivision" EXACT [FMA:24876] +synonym: "segment of free upper limb" EXACT [FMA:24876] +synonym: "subdivision of free upper limb" EXACT [FMA:24876] +xref: FMA:24876 +is_a: UBERON:0002529 ! limb segment +intersection_of: UBERON:0002529 ! limb segment +intersection_of: part_of UBERON:0002102 ! forelimb +relationship: part_of UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0008786 +name: third trochanter +def: "The upper part of the gluteal tuberosity is often elongated into a roughened crest, on which a more or less well-marked, rounded tubercle, the third trochanter, is occasionally developed." [http://en.wikipedia.org/wiki/Third_trochanter] +synonym: "trochanter tertius" RELATED LATIN [http://en.wikipedia.org/wiki/Third_trochanter] +xref: FMA:75824 +xref: Third:trochanter +is_a: UBERON:0000980 {source="Wikipedia"} ! trochanter +relationship: part_of UBERON:0004412 {source="FMA"} ! proximal epiphysis of femur + +[Term] +id: UBERON:0008787 +name: fourth trochanter +def: "A knob-like feature on the medial side of the femur that serves as a muscle attachment." [http://en.wikipedia.org/wiki/Fourth_trochanter] +comment: The fourth trochanter first appeared in the Erythrosuchidae, large basal archosaurian predators of the early Triassic period. This seemingly insignificant detail may have made the evolution of dinosaurs possible (all early dinosaurs and many later ones were bipeds), and may also be connected with the ability of the archosaurs or their immediate ancestors to survive the catastrophic Permian-Triassic extinction event[WP]. +xref: Fourth:trochanter +is_a: UBERON:0000980 {source="Wikipedia"} ! trochanter + +[Term] +id: UBERON:0008788 +name: posterior cranial fossa +def: "The infratentorial compartment that contains the CEREBELLUM and BRAIN STEM. It is formed by the posterior third of the superior surface of the body of the sphenoid (SPHENOID BONE), by the occipital, the petrous, and mastoid portions of the TEMPORAL BONE, and the posterior inferior angle of the PARIETAL BONE." [http://en.wikipedia.org/wiki/Posterior_cranial_fossa, MESH:A01.456.830.200] +subset: pheno_slim +synonym: "fossa cranii posterior" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_cranial_fossa] +synonym: "posterior fossa" BROAD [ncithesaurus:Posterior] +xref: CALOHA:TS-2354 +xref: FMA:54368 +xref: GAID:85 +xref: http://en.wikipedia.org/wiki/Posterior_cranial_fossa +xref: http://linkedlifedata.com/resource/umls/id/C0010265 +xref: MESH:D003388 +xref: NCIT:C33361 +xref: UMLS:C0010265 {source="ncithesaurus:Posterior_Fossa"} +is_a: UBERON:0008789 ! cranial fossa + +[Term] +id: UBERON:0008789 +name: cranial fossa +def: "Any of the three large depressions in the posterior, middle, and anterior aspects of the floor of the cranial cavity" [http://mw1.merriam-webster.com/medical/cranial%20fossa] +xref: FMA:321144 +is_a: UBERON:0004704 ! bone fossa +intersection_of: UBERON:0004704 ! bone fossa +intersection_of: part_of UBERON:0003128 ! cranium +relationship: part_of UBERON:0004766 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! cranial bone + +[Term] +id: UBERON:0008790 +name: rugal fold +def: "A ridge or fold, such as the rugae of the stomach, which are large folds in the mucous membrane of that organ." [http://en.wikipedia.org/wiki/Rugae, http://medical-dictionary.thefreedictionary.com/Rugal+folds] +synonym: "ruga" EXACT [http://en.wikipedia.org/wiki/Rugae] +synonym: "rugae" RELATED PLURAL [http://en.wikipedia.org/wiki/Rugae] +xref: http://en.wikipedia.org/wiki/Rugae +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0000344 ! mucosa + +[Term] +id: UBERON:0008791 +name: rugal fold of stomach +def: "A rugal fold that is part of a stomach." [OBOL:automatic] +synonym: "gastric ruga" EXACT [FMA:15106] +synonym: "gastric ruga(e)" RELATED [FMA:15106] +synonym: "gastric rugae" EXACT PLURAL [FMA:15106] +synonym: "ruga of stomach" EXACT [FMA:15106] +xref: FMA:15106 +xref: Gastric:rugae +xref: http://linkedlifedata.com/resource/umls/id/C0227199 +xref: http://www.snomedbrowser.com/Codes/Details/268518001 +xref: NCIT:C32660 +xref: UMLS:C0227199 {source="ncithesaurus:Gastric_Rugae"} +is_a: UBERON:0008790 ! rugal fold +intersection_of: UBERON:0008790 ! rugal fold +intersection_of: part_of UBERON:0000945 ! stomach +relationship: part_of UBERON:0001199 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! mucosa of stomach + +[Term] +id: UBERON:0008798 +name: rugal fold of vagina +def: "A rugal fold that is part of a vagina." [OBOL:automatic] +synonym: "ruga of vagina" EXACT [FMA:19991] +synonym: "vaginal ruga" EXACT [FMA:19991] +xref: FMA:19991 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0008790 ! rugal fold +intersection_of: UBERON:0008790 ! rugal fold +intersection_of: part_of UBERON:0000996 ! vagina +relationship: part_of UBERON:0004983 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! mucosa of vagina + +[Term] +id: UBERON:0008799 +name: transverse palatine fold +def: "Any of the the series of transverse folds (ridges) of the mucosa located on the anterior third part of the secondary (hard) palate of most mammalian species." [MP:0009652] +subset: pheno_slim +synonym: "hard palate palatal rugae" EXACT PLURAL [EMAPA:35638] +synonym: "hard palate ruga" EXACT [] +synonym: "impressiones rugales" EXACT PLURAL [https://orcid.org/0000-0002-6601-2165] +synonym: "palatal rugae" EXACT [MP:0009652] +synonym: "palatine fold" EXACT [FMA:75652] +synonym: "palatine rugae" EXACT PLURAL [FMA:75652] +synonym: "plica palatina transversa" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html] +synonym: "plicae palatinae transversae" EXACT LATIN [FMA:75652, FMA:TA] +synonym: "ruga of palate" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "ruga palatina" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html] +synonym: "rugae of palate" EXACT PLURAL [https://orcid.org/0000-0002-6601-2165] +synonym: "rugae palatinae" EXACT PLURAL [FMA:75652, FMA:TA] +synonym: "set of transverse palatine folds" RELATED [FMA:75652] +synonym: "transverse palatine folds" EXACT PLURAL [FMA:75652] +synonym: "transverse palatine folds set" EXACT PLURAL [FMA:75652] +synonym: "transverse palatine ridge" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html] +xref: EMAPA:35638 +xref: FMA:75652 +is_a: UBERON:0008790 ! rugal fold +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0008790 ! rugal fold +intersection_of: part_of UBERON:0003216 ! hard palate +relationship: part_of UBERON:0005046 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! mucosa of hard palate + +[Term] +id: UBERON:0008800 +name: parietal endoderm +def: "primitive endoderm-derived tissue that lines the luminal surface of the mural trophectoderm[MP]" [http://www.ncbi.nlm.nih.gov/pubmed/19201946, MP:0011187] +subset: pheno_slim +synonym: "distal endoderm" RELATED [EMAPA:16053] +xref: EMAPA:16053 +is_a: UBERON:0000478 ! extraembryonic structure +is_a: UBERON:0016888 {source="cjm"} ! transitional anatomical structure +relationship: develops_from UBERON:0008780 {source="MP"} ! inner cell mass derived epiblast + +[Term] +id: UBERON:0008801 +name: parotid gland primordium +xref: EHDAA2:0001413 +xref: EHDAA:9246 +is_a: UBERON:0001048 {source="Obol"} ! primordium + +[Term] +id: UBERON:0008802 +name: cheek pouch +def: "A pocketlike fold of skin in the cheeks of various animals, such as squirrels, gophers, and monkeys, that functions as a means of carrying food." [BTO:0002224] +synonym: "buccal pouch" EXACT [] +xref: BTO:0002224 +xref: Cheek:pouch +xref: EMAPA:37452 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/31293007 +xref: MA:0003059 +xref: NCIT:C111156 +is_a: UBERON:0008803 ! skin of cheek +relationship: part_of UBERON:0000165 ! mouth + +[Term] +id: UBERON:0008803 +name: skin of cheek +def: "A zone of skin that is part of a cheek." [OBOL:automatic] +subset: pheno_slim +synonym: "cheek skin" EXACT [FMA:24759] +xref: FMA:24759 +xref: http://www.snomedbrowser.com/Codes/Details/181472009 +is_a: UBERON:1000021 ! skin of face +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0001567 ! cheek +relationship: part_of UBERON:0001567 ! cheek + +[Term] +id: UBERON:0008804 +name: stylopharyngeus muscle +def: "The stylopharyngeus is a muscle in the head that stretches between the styloid process and the pharynx." [http://en.wikipedia.org/wiki/Stylopharyngeus_muscle] +synonym: "M. stylopharyngeus" RELATED [http://en.wikipedia.org/wiki/Stylopharyngeus_muscle] +synonym: "musculus stylopharyngeus" RELATED LATIN [http://en.wikipedia.org/wiki/Stylopharyngeus_muscle] +synonym: "musculus stylopharyngeus" RELATED [http://en.wikipedia.org/wiki/Stylopharyngeus_muscle] +synonym: "stylopharyngeus" EXACT [http://en.wikipedia.org/wiki/Stylopharyngeus_muscle] +xref: FMA:46664 +xref: http://linkedlifedata.com/resource/umls/id/C1522014 +xref: http://www.snomedbrowser.com/Codes/Details/244806000 +xref: NCIT:C33639 +xref: Stylopharyngeus:muscle +xref: UMLS:C1522014 {source="ncithesaurus:Stylopharyngeus"} +is_a: UBERON:0000933 {source="FMA"} ! pharyngeal muscle +is_a: UBERON:0003831 ! respiratory system muscle +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0013765 ! digestive system element +is_a: UBERON:0015212 ! lateral structure +relationship: develops_from UBERON:0003114 {source="Wikipedia"} ! pharyngeal arch 3 +relationship: has_muscle_insertion UBERON:0001738 {notes="thyroid cartilage", source="dbpedia"} ! thyroid cartilage +relationship: has_muscle_origin UBERON:0003960 {source="dbpedia"} ! styloid process of temporal bone +relationship: in_lateral_side_of UBERON:0001042 {source="FMA-abduced-lr"} ! chordate pharynx +relationship: innervated_by UBERON:0001649 {source="dbpedia"} ! glossopharyngeal nerve +relationship: part_of UBERON:0001042 ! chordate pharynx + +[Term] +id: UBERON:0008805 +name: gingival groove +def: "The gingival sulcus is an area of potential space between a tooth and the surrounding gingival tissue and is lined by sulcular epithelium. The depth of the sulcus (Latin for groove) is bounded by two entities: apically by the gingival fibers of the connective tissue attachment and coronally by the free gingival margin." [http://en.wikipedia.org/wiki/Gingival_sulcus] +synonym: "gingival sulcus" EXACT [FMA:74580] +synonym: "sulcus gingivalis" EXACT LATIN [FMA:TA] +synonym: "sulcus gingivalis" RELATED LATIN [http://en.wikipedia.org/wiki/Gingival_sulcus] +synonym: "tooth-gingiva interface" EXACT [] +xref: FMA:74580 +xref: Gingival:sulcus +xref: http://www.snomedbrowser.com/Codes/Details/245753001 +xref: NCIT:C114645 +is_a: UBERON:0000093 ! sulcus +intersection_of: UBERON:0000093 ! sulcus +intersection_of: adjacent_to UBERON:0001091 ! calcareous tooth +intersection_of: adjacent_to UBERON:0001828 ! gingiva +relationship: adjacent_to UBERON:0001091 ! calcareous tooth +relationship: adjacent_to UBERON:0001828 ! gingiva +relationship: part_of UBERON:0000165 ! mouth + +[Term] +id: UBERON:0008806 +name: buccal funnel +synonym: "suctorial disc" EXACT [] +synonym: "suctorial disk" EXACT [] +is_a: UBERON:0000166 ! oral opening + +[Term] +id: UBERON:0008807 +name: coagulating gland +def: "A lobe of the prostate in rodents that is thin and tubular and is attached to the lesser curvature of the paired seminal vesicles. Secretes substances that contribute to the formation of the copulatory plug." [http://www.ncbi.nlm.nih.gov/pubmed/12645922, http://www.ncbi.nlm.nih.gov/pubmed/1806140, http://www.ncbi.nlm.nih.gov/pubmed/3308446, MP:0002771] +subset: pheno_slim +synonym: "anterior prostate gland" RELATED [EMAPA:29794] +synonym: "prostate gland anterior lobe" RELATED [MA:0000402, MP:0002771] +xref: BTO:0000265 +xref: EMAPA:29794 +xref: http://www.snomedbrowser.com/Codes/Details/78779004 +xref: MA:0000402 +xref: NCIT:C77618 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0010147 ! male accessory sex gland +relationship: contributes_to_morphology_of UBERON:0002367 ! prostate gland +relationship: part_of UBERON:0002367 {not_supported_by="MA", source="EMAPA"} ! prostate gland + +[Term] +id: UBERON:0008808 +name: prostate gland dorsolateral lobe +def: "the rodent prostate lobe that lies in the triangular area between urethra and seminal vesicle" [http://www.ncbi.nlm.nih.gov/pubmed/12645922, http://www.ncbi.nlm.nih.gov/pubmed/3308446, MP:0009381] +subset: pheno_slim +synonym: "dorsolateral prostate" RELATED [] +xref: BTO:0000541 +xref: EMAPA:35710 +xref: MA:0001739 +is_a: UBERON:0001328 {source="MA"} ! lobe of prostate +relationship: contributes_to_morphology_of UBERON:0002367 ! prostate gland + +[Term] +id: UBERON:0008809 +name: foramina of scarpa +def: "In the maxilla, occasionally two additional canals are present in the middle line of the palatine process; they are termed the foramina of Scarpa, and when present transmit the nasopalatine nerves, the left passing through the anterior, and the right through the posterior canal." [http://en.wikipedia.org/wiki/Foramina_of_Scarpa] +synonym: "foramina of scarpa" RELATED [http://en.wikipedia.org/wiki/Foramina_of_Scarpa] +xref: http://en.wikipedia.org/wiki/Foramina_of_Scarpa +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0005871 ! palatine process of maxilla +relationship: surrounds UBERON:0008810 ! nasopalatine nerve + +[Term] +id: UBERON:0008810 +name: nasopalatine nerve +def: "A branch of that maxillary nerve that innervates the mucous membrane of the hard palate." [http://medical-dictionary.thefreedictionary.com/nasopalatine+nerve, UBERON:cjm] +synonym: "naso-palatine nerve" RELATED [http://en.wikipedia.org/wiki/Nasopalatine_nerve] +synonym: "nasopalatine" RELATED [http://en.wikipedia.org/wiki/Nasopalatine_nerve] +synonym: "nasopalatine nerves" RELATED [http://en.wikipedia.org/wiki/Nasopalatine_nerve] +synonym: "nervus nasopalatinus" RELATED LATIN [http://en.wikipedia.org/wiki/Nasopalatine_nerve] +synonym: "Scarpa's nerve" EXACT [FMA:52797] +xref: BAMS:npal +xref: FMA:52797 +xref: Nasopalatine:nerve +is_a: UBERON:0011779 ! nerve of head region +intersection_of: UBERON:0001021 ! nerve +intersection_of: branching_part_of UBERON:0000377 ! maxillary nerve +intersection_of: innervates UBERON:0005046 ! mucosa of hard palate +relationship: branching_part_of UBERON:0000377 ! maxillary nerve +relationship: innervates UBERON:0005046 ! mucosa of hard palate +relationship: part_of UBERON:0000377 ! maxillary nerve + +[Term] +id: UBERON:0008811 +name: intromittent organ +def: "An external organ of a male organism that is specialized to deliver sperm during copulation. Intromittent organs are found most often in terrestrial species, as most aquatic species fertilize their eggs externally, although there are exceptions[WP]." [http://en.wikipedia.org/wiki/Intromittent_organ] +subset: grouping_class +subset: organ_slim +synonym: "aedeagus" NARROW SENSU [FBbt:00004850] +synonym: "copulatory organ" RELATED [] +synonym: "penis" NARROW [] +xref: AAO:0010255 +xref: FBbt:00004850 +xref: HAO:0000091 +xref: Intromittent:organ +xref: TAO:0002036 +xref: TGMA:0000585 +is_a: UBERON:0003135 ! male reproductive organ + +[Term] +id: UBERON:0008812 +name: hemipenis +def: "one of a pair of intromittent organs of male squamates. Hemipenes are usually held inverted, within the body, and are everted for reproduction via erectile tissue like that in the human penis. Only one is used at a time, and some evidence indicates males alternate use between copulations. The hemipenis itself has a variety of shapes, depending on species. Often the hemipenis bears spines or hooks, in order to anchor the male within the female. Some species even have forked hemipenes (each hemipenis has two tips). Due to being everted and inverted, hemipenes do not have a completely enclosed channel for the conduction of sperm, but rather a seminal groove which seals as the erectile tissue expands" [http://en.wikipedia.org/wiki/Hemipenis] +subset: organ_slim +synonym: "hemipenes" RELATED PLURAL [http://en.wikipedia.org/wiki/Hemipenis] +xref: http://en.wikipedia.org/wiki/Hemipenis +xref: http://www.snomedbrowser.com/Codes/Details/27265006 +is_a: UBERON:0008811 {source="Wikipedia"} ! intromittent organ + +[Term] +id: UBERON:0008813 +name: helicotrema +def: "The part of the cochlear labyrinth where the scala tympani and the scala vestibuli meet. It is the main component of the cochlear apex. The hair cells in this area best detect low frequency sounds." [http://en.wikipedia.org/wiki/Helicotrema] +synonym: "apex of cochlea" BROAD [http://en.wikipedia.org/wiki/Cochlea] +synonym: "cochlear apex" BROAD [http://en.wikipedia.org/wiki/Cochlea] +synonym: "Scarpa's orifice" EXACT [FMA:61275] +xref: FMA:61275 +xref: http://en.wikipedia.org/wiki/Helicotrema +xref: http://linkedlifedata.com/resource/umls/id/C0229512 +xref: http://www.snomedbrowser.com/Codes/Details/279775003 +xref: NCIT:C32723 +xref: UMLS:C0229512 {source="ncithesaurus:Helicotrema"} +is_a: UBERON:0000161 {source="FMA"} ! orifice +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002499 {source="Wikipedia"} ! cochlear labyrinth + +[Term] +id: UBERON:0008814 +name: pharyngeal arch system +def: "A transient embryonic complex that comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming, which may include (depending on species) the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear[GO,modified]." [GO:0060037, GOC:dph] +synonym: "embryonic pharyngeal complex" EXACT [] +synonym: "pharyngeal apparatus" EXACT [] +synonym: "pharyngeal arch complex" RELATED [] +synonym: "pharyngeal arch region" RELATED [EHDAA2:0000187] +synonym: "pharyngeal arches and clefts" RELATED [] +synonym: "pharyngeal complex" RELATED [] +synonym: "pharyngeal system" EXACT [GO:0060037] +xref: EHDAA2:0000187 +xref: FMA:293041 +xref: http://linkedlifedata.com/resource/umls/id/C1519038 +xref: NCIT:C34248 +xref: UMLS:C1519038 {source="ncithesaurus:Pharyngeal_Apparatus"} +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0000922 ! embryo +relationship: part_of UBERON:0009145 ! pharyngeal region of foregut + +[Term] +id: UBERON:0008815 +name: pharyngeal slit +def: "An organ formed from the perforation between the point of contact between ectoderm and endoderm in the pharynx. The slits assist in filtering food particles from the water." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/23020903] +subset: organ_slim +synonym: "gill slit" RELATED [] +synonym: "pharyngeal perforation" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/23020903] +xref: Pharyngeal:slit +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0013765 ! digestive system element +relationship: develops_from UBERON:0007690 {source="cjm"} ! early pharyngeal endoderm +relationship: part_of UBERON:0001042 ! chordate pharynx + +[Term] +id: UBERON:0008816 +name: embryonic head +def: "A head that is part of a embryo." [OBOL:automatic] +subset: non_informative +xref: CALOHA:TS-0246 +xref: FBbt:00000155 +xref: FMA:293011 +is_a: UBERON:0000033 ! head +intersection_of: UBERON:0000033 ! head +intersection_of: part_of UBERON:0000922 ! embryo +relationship: part_of UBERON:0000922 ! embryo + +[Term] +id: UBERON:0008817 +name: thymus primordium endoderm +def: "An endoderm that is part of a thymus primordium." [OBOL:automatic] +is_a: UBERON:0000925 ! endoderm +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000925 ! endoderm +intersection_of: part_of UBERON:0005562 ! thymus primordium +relationship: has_developmental_contribution_from UBERON:0007124 {source="http://www.ncbi.nlm.nih.gov/pubmed/16313389"} ! pharyngeal pouch 3 +relationship: part_of UBERON:0005562 ! thymus primordium + +[Term] +id: UBERON:0008818 +name: superior mediastinum +def: "The superior mediastinum is that portion of the interpleural space which lies between the manubrium sterni in front, and the upper thoracic vertebrae behind." [http://en.wikipedia.org/wiki/Superior_mediastinum] +synonym: "mediastinum superius" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_mediastinum] +synonym: "superior mediastinal part of chest" EXACT [FMA:9827] +xref: FMA:9827 +xref: http://linkedlifedata.com/resource/umls/id/C0230147 +xref: http://www.snomedbrowser.com/Codes/Details/362687003 +xref: NCIT:C33684 +xref: Superior:mediastinum +xref: UMLS:C0230147 {source="ncithesaurus:Superior_Mediastinum"} +is_a: UBERON:0002224 ! thoracic cavity +relationship: part_of UBERON:0003728 {source="FMA"} ! mediastinum + +[Term] +id: UBERON:0008819 +name: inferior mediastinum +def: "Anterior, middle and posterior mediastinum." [http://en.wikipedia.org/wiki/Inferior_mediastinum] +synonym: "inferior mediastinal part of chest" EXACT [FMA:9828] +xref: FMA:9828 +xref: http://www.snomedbrowser.com/Codes/Details/243950006 +xref: Inferior:mediastinum +is_a: UBERON:0002224 ! thoracic cavity +relationship: part_of UBERON:0001443 {source="FMA-propagated"} ! chest +relationship: part_of UBERON:0003728 {source="FMA"} ! mediastinum + +[Term] +id: UBERON:0008820 +name: anterior mediastinum +def: "The anterior mediastinum exists only on the left side where the left pleura diverges from the mid-sternal line. It is narrow, above, but widens out a little below." [http://en.wikipedia.org/wiki/Anterior_mediastinum] +synonym: "anterior mediastinal part of chest" EXACT [FMA:9838] +synonym: "mediastinum anterius" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_mediastinum] +xref: Anterior:mediastinum +xref: FMA:9838 +xref: http://linkedlifedata.com/resource/umls/id/C0230148 +xref: http://www.snomedbrowser.com/Codes/Details/261048003 +xref: NCIT:C32098 +xref: UMLS:C0230148 {source="ncithesaurus:Anterior_Mediastinum"} +is_a: UBERON:0002224 ! thoracic cavity +disjoint_from: UBERON:0008822 {source="lexical"} ! posterior mediastinum +relationship: part_of UBERON:0008819 {source="FMA"} ! inferior mediastinum + +[Term] +id: UBERON:0008821 +name: middle mediastinum +def: "The middle mediastinum is the broadest part of the interpleural space. It is made up of the pericardial sac and its contents." [http://en.wikipedia.org/wiki/Middle_mediastinum] +synonym: "mediastinum medium" RELATED LATIN [http://en.wikipedia.org/wiki/Middle_mediastinum] +synonym: "middle mediastinal part of chest" EXACT [FMA:9839] +xref: FMA:9839 +xref: http://linkedlifedata.com/resource/umls/id/C0230149 +xref: http://www.snomedbrowser.com/Codes/Details/362688008 +xref: Middle:mediastinum +xref: NCIT:C33123 +xref: UMLS:C0230149 {source="ncithesaurus:Middle_Mediastinum"} +is_a: UBERON:0002224 ! thoracic cavity +relationship: part_of UBERON:0008819 {source="FMA"} ! inferior mediastinum + +[Term] +id: UBERON:0008822 +name: posterior mediastinum +def: "The posterior mediastinum is an irregular triangular space running parallel with the vertebral column." [http://en.wikipedia.org/wiki/Posterior_mediastinum] +synonym: "mediastinum posterius" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_mediastinum] +synonym: "posterior mediastinal part of chest" EXACT [FMA:9840] +xref: FMA:9840 +xref: http://linkedlifedata.com/resource/umls/id/C0230150 +xref: http://www.snomedbrowser.com/Codes/Details/243957009 +xref: NCIT:C33368 +xref: Posterior:mediastinum +xref: UMLS:C0230150 {source="ncithesaurus:Posterior_Mediastinum"} +is_a: UBERON:0002224 ! thoracic cavity +relationship: part_of UBERON:0008819 {source="FMA"} ! inferior mediastinum + +[Term] +id: UBERON:0008823 +name: neural tube derived brain +def: "A brain that develops_from a neural tube." [https://github.com/obophenotype/uberon/issues/338, OBOL:automatic] +synonym: "vertebrate brain" NARROW [] +is_a: UBERON:0000489 {source="ZFA"} ! cavitated compound organ +is_a: UBERON:0000955 ! brain +intersection_of: UBERON:0000955 ! brain +intersection_of: develops_from UBERON:0001049 ! neural tube +relationship: develops_from UBERON:0001049 ! neural tube +relationship: part_of UBERON:0000033 {source="FMA"} ! head + +[Term] +id: UBERON:0008824 +name: duct of epididymis +def: "Any duct branching of of the main epididymis duct." [http://orcid.org/0000-0002-6601-2165] +synonym: "epididymal duct" EXACT [MA:0001735] +synonym: "epididymis duct" EXACT [FMA:18297] +xref: EMAPA:36525 +xref: FMA:18297 +xref: http://linkedlifedata.com/resource/umls/id/C0458632 +xref: http://www.snomedbrowser.com/Codes/Details/279623004 +xref: MA:0001735 +xref: NCIT:C32484 +xref: UMLS:C0458632 {source="ncithesaurus:Duct_of_the_Epididymis"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005904 ! duct of male reproductive system +intersection_of: UBERON:0000058 ! duct +intersection_of: branching_part_of UBERON:0001301 ! epididymis +relationship: branching_part_of UBERON:0001301 ! epididymis +relationship: part_of UBERON:0001301 {source="FMA"} ! epididymis + +[Term] +id: UBERON:0008826 +name: pulmonary surfactant +def: "a substance formed by type II alveolar cells composed of surface-active lipoprotein complex (phospholipoprotein)." [http://en.wikipedia.org/wiki/Pulmonary_surfactant] +subset: pheno_slim +synonym: "alveolar surfactant" EXACT [FMA:62780] +synonym: "lung surfactant" EXACT [MA:0002534] +synonym: "type II pneumocyte secretion" EXACT [] +xref: EMAPA:36551 +xref: FMA:62780 +xref: http://linkedlifedata.com/resource/umls/id/C0034085 +xref: MA:0002534 +xref: NCIT:C13273 +xref: Pulmonary:surfactant +xref: UMLS:C0034085 {source="ncithesaurus:Lung_Surfactant"} +is_a: UBERON:0006538 ! respiratory system fluid/secretion + +[Term] +id: UBERON:0008827 +name: murine forestomach +def: "A distinct rodent non-glandular region of the stomach which is demarcated from the glandular stomach by the limiting ridge (margo plicatus)." [MGI:anna, MP:0010784] +subset: pheno_slim +synonym: "anterior stomach" RELATED [MGI:anna] +synonym: "antrum cardiacum" RELATED LATIN [MGI:anna] +synonym: "forestomach" BROAD [] +synonym: "proximal stomach" RELATED [MGI:anna] +synonym: "stomach non-glandular region" BROAD [MGI:anna] +xref: EMAPA:17627 +xref: http://linkedlifedata.com/resource/umls/id/C0033745 +xref: MA:0001606 +xref: NCIT:C77956 +xref: UMLS:C0033745 {source="ncithesaurus:Forestomach"} +is_a: UBERON:0011954 ! stomach non-glandular region +relationship: continuous_with UBERON:0007650 ! esophagogastric junction +relationship: continuous_with UBERON:0011953 ! stomach glandular region +relationship: contributes_to_morphology_of UBERON:0000945 ! stomach + +[Term] +id: UBERON:0008828 +name: presphenoid bone +def: "The anterior part of the body of the sphenoid bone in front of the basisphenoid. It is usually a separate bone in the young or fetus, but becomes a part of the sphenoid in the adult." [http://en.wikipedia.org/wiki/Ossification_of_sphenoid#Presphenoid, http://www.thefreedictionary.com/Presphenoid+bone] +subset: pheno_slim +synonym: "presphenoidal bone" EXACT [] +xref: EMAPA:36616 +xref: FMA:321632 +xref: http://www.snomedbrowser.com/Codes/Details/95949009 +xref: MA:0001470 +xref: Presphenoid +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0011164 {source="MA"} ! neurocranium bone +relationship: contributes_to_morphology_of UBERON:0001677 ! sphenoid bone +relationship: part_of UBERON:0001677 {source="MA"} ! sphenoid bone +relationship: part_of UBERON:0003111 {source="ISBN:0073040584"} ! sphenoid region + +[Term] +id: UBERON:0008829 +name: cerebellum external granule cell layer +def: "transient layer of the cerebellar cortex present during development which is composed of dividing and migrating granule cells[MP]" [http://en.wikipedia.org/wiki/Anatomy_of_the_cerebellum#Development, MP:0000874] +subset: pheno_slim +synonym: "external granule layer" BROAD [] +synonym: "granule cell layer" BROAD [MP:0000872] +synonym: "granule layer" BROAD [MP:0000872] +synonym: "outer granular layer of cerebellar cortex" EXACT [BIRNLEX:797] +xref: BIRNLEX:797 +xref: Development +xref: EMAPA:35216 +xref: http://linkedlifedata.com/resource/umls/id/C0228473 +xref: http://linkedlifedata.com/resource/umls/id/C1289480 +xref: MA:0000994 +xref: UMLS:C0228473 {source="BIRNLEX:797"} +xref: UMLS:C1289480 {source="BIRNLEX:797"} +is_a: UBERON:0002956 {source="MA"} ! granular layer of cerebellar cortex + +[Term] +id: UBERON:0008830 +name: cerebellum internal granule cell layer +synonym: "inner granular layer of cerebellar cortex" EXACT [BIRNLEX:790] +xref: BIRNLEX:790 +xref: EMAPA:35219 +xref: http://linkedlifedata.com/resource/umls/id/C0228471 +xref: http://linkedlifedata.com/resource/umls/id/C1289476 +xref: http://linkedlifedata.com/resource/umls/id/C1708540 +xref: MA:0000995 +xref: NCIT:C49141 +xref: UMLS:C0228471 {source="BIRNLEX:790"} +xref: UMLS:C1289476 {source="BIRNLEX:790"} +xref: UMLS:C1708540 {source="ncithesaurus:Internal_Granular_Layer_of_the_Cerebellum"} +is_a: UBERON:0002956 {source="MA"} ! granular layer of cerebellar cortex + +[Term] +id: UBERON:0008831 +name: inner spiral sulcus +def: "A concavity in the floor of the cochlear duct formed by the overhanging vestibular lip." [http://www.drugs.com/dict/inner-spiral-sulcus.html] +comment: part_of spiral sulcus in MA +synonym: "internal spiral sulcus" EXACT [MA:0001197] +synonym: "sulcus spiralis internus" EXACT [http://www.drugs.com/dict/inner-spiral-sulcus.html] +xref: EMAPA:35438 +xref: FMA:77850 +xref: http://en.wikipedia.org/wiki/Sulcus_spiralis_internus +xref: MA:0001197 +is_a: UBERON:0002277 {source="FMA"} ! spiral sulcus + +[Term] +id: UBERON:0008832 +name: outer spiral sulcus +def: "A concavity in the outer wall of the cochlear duct between the spiral prominence and the spiral organ." [http://www.drugs.com/dict/outer-spiral-sulcus.html] +comment: part_of spiral sulcus in MA +synonym: "external spiral sulcus" EXACT [MA:0001196] +synonym: "sulcus spiralis externus" EXACT [http://www.drugs.com/dict/outer-spiral-sulcus.html] +xref: EMAPA:35332 +xref: FMA:77851 +xref: http://en.wikipedia.org/wiki/Sulcus_spiralis_externus +xref: MA:0001196 +is_a: UBERON:0002277 {source="FMA"} ! spiral sulcus + +[Term] +id: UBERON:0008833 +name: great auricular nerve +def: "A nerve arising from the second and third cervical nerves from the cervical plexus and innervating the skin over the parotid gland, the skin of part of the ear, the adjacent portion of the scalp, cheek, and angle of the jaw." [http://en.wikipedia.org/wiki/Great_auricular_nerve, http://medical-dictionary.thefreedictionary.com/great+auricular+nerve] +synonym: "great auricular" RELATED [http://en.wikipedia.org/wiki/Great_auricular_nerve] +synonym: "greater auricular nerve" RELATED [http://en.wikipedia.org/wiki/Great_auricular_nerve] +synonym: "nervus auricularis magnus" EXACT LATIN [http://en.wikipedia.org/wiki/Great_auricular_nerve] +xref: FMA:6872 +xref: http://en.wikipedia.org/wiki/Great_auricular_nerve +xref: http://www.snomedbrowser.com/Codes/Details/181110003 +is_a: UBERON:0035648 ! nerve innervating pinna +relationship: branching_part_of UBERON:0003725 {source="FMA", source="Wikipedia"} ! cervical nerve plexus +relationship: part_of UBERON:0003725 ! cervical nerve plexus + +[Term] +id: UBERON:0008834 +name: prostomium +def: "The first body segment in annelids worms. It is in front of (but does not include) the mouth, being usually a small shelf- or lip-like extension over the dorsal side of the mouth." [http://en.wikipedia.org/wiki/Prostomium] +synonym: "acron" RELATED [BTO:0004198, http://en.wikipedia.org/wiki/Prostomium] +xref: BTO:0004198 +xref: http://en.wikipedia.org/wiki/Prostomium +is_a: UBERON:0000914 ! organismal segment + +[Term] +id: UBERON:0008835 +name: hepatic diverticulum +def: "An out-pocket of thickened ventral foregut epithelium adjacent to the developing heart. Constitutes the first morphological sign of the embryonic liver. The anterior portion of the hepatic diverticulum gives rise to the liver and intrahepatic biliary tree, while the posterior portion forms the gall bladder and extrahepatic bile ducts." [http://www.stembook.org/node/512, MP:MP] +subset: pheno_slim +synonym: "diverticulum hepaticum" RELATED LATIN [http://en.wikipedia.org/wiki/Hepatic_diverticulum] +synonym: "liver diverticulum" EXACT [XAO:0000101] +xref: AAO:0011057 +xref: EHDAA2:0000740 +xref: EHDAA:1530 +xref: Hepatic:diverticulum +xref: http://linkedlifedata.com/resource/umls/id/C1512407 +xref: NCIT:C34187 +xref: UMLS:C1512407 {source="ncithesaurus:Hepatic_Diverticulum"} +xref: XAO:0000101 +is_a: UBERON:0004185 ! endodermal part of digestive tract +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac +is_a: UBERON:0009497 ! epithelium of foregut-midgut junction +is_a: UBERON:0009854 ! digestive tract diverticulum +relationship: develops_from UBERON:0003894 {source="EHDAA2"} ! liver primordium +relationship: part_of UBERON:0004161 {notes="caudal part", source="EHDAA2"} ! septum transversum + +[Term] +id: UBERON:0008836 +name: liver bud +xref: BTO:0001642 +is_a: UBERON:0004185 ! endodermal part of digestive tract +is_a: UBERON:0007499 {source="cjm"} ! epithelial sac +is_a: UBERON:0009497 ! epithelium of foregut-midgut junction +is_a: UBERON:0009854 ! digestive tract diverticulum +relationship: develops_from UBERON:0008835 {source="http://www.stembook.org/node/512"} ! hepatic diverticulum + +[Term] +id: UBERON:0008837 +name: palmar/plantar part of autopod +is_a: UBERON:0002529 ! limb segment +relationship: part_of UBERON:0002470 ! autopod region + +[Term] +id: UBERON:0008838 +name: metapodial pad +def: "A thick, spongy layer of tissue located under the metacarpal and metatarsal joints of the autopod" [ncithesaurus:Footpad] +subset: pheno_slim +synonym: "foot pad" RELATED [] +synonym: "footpad" RELATED [MA:0003010] +synonym: "metapodium pad" RELATED [] +xref: MA:0003010 +xref: NCIT:C92654 +is_a: UBERON:0012348 ! autopod pad +intersection_of: UBERON:0012348 ! autopod pad +intersection_of: part_of UBERON:0009877 ! metapodium region +relationship: contributes_to_morphology_of UBERON:0002470 ! autopod region +relationship: part_of UBERON:0009877 ! metapodium region + +[Term] +id: UBERON:0008839 +name: palmar pad +def: "An autopod pad that is in the metacarpal region" [https://orcid.org/0000-0002-6601-2165] +synonym: "hind foot pad" RELATED [] +synonym: "metacarpal foot pad" RELATED [] +synonym: "metacarpal pad" RELATED [] +synonym: "palmar pads" RELATED PLURAL [EMAPA:18489] +xref: EMAPA:18489 +is_a: UBERON:0008838 ! metapodial pad +is_a: UBERON:0013622 ! manual autopod pad +is_a: UBERON:0013777 ! skin of palm of manus +intersection_of: UBERON:0008838 ! metapodial pad +intersection_of: part_of UBERON:0004453 ! metacarpus region +relationship: part_of UBERON:0004453 ! metacarpus region + +[Term] +id: UBERON:0008840 +name: plantar pad +def: "An autopod pad that is in the metatarsal region" [https://orcid.org/0000-0002-6601-2165] +synonym: "fore foot pad" RELATED [] +synonym: "metatarsal foot pad" RELATED [] +synonym: "metatarsal pad" RELATED [] +synonym: "plantar pads" RELATED PLURAL [EMAPA:18507] +xref: EMAPA:18507 +is_a: UBERON:0008838 ! metapodial pad +is_a: UBERON:0013623 ! pedal autopod pad +is_a: UBERON:0013778 ! skin of sole of pes +intersection_of: UBERON:0008838 ! metapodial pad +intersection_of: part_of UBERON:0000983 ! metatarsus region +relationship: part_of UBERON:0000983 ! metatarsus region + +[Term] +id: UBERON:0008841 +name: suspensory ligament +def: "A ligament that supports a body part, especially an organ." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0008845 ! nonskeletal ligament + +[Term] +id: UBERON:0008842 +name: suspensory ligament of testis +def: "The cranial atrophic portion of the urogenital ridge attached to the cranial pole of the intraabdominal embryonic testis" [http://en.wikipedia.org/wiki/Scrotal_ligament, http://www.medilexicon.com/medicaldictionary.php?t=49790] +synonym: "scrotal ligament" RELATED [http://en.wikipedia.org/wiki/Gubernaculum] +xref: http://www.snomedbrowser.com/Codes/Details/279592009 +xref: Scrotal:ligament +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0008841 {source="Obol"} ! suspensory ligament +intersection_of: UBERON:0008841 ! suspensory ligament +intersection_of: attaches_to UBERON:0000473 ! testis +relationship: attaches_to UBERON:0000473 ! testis +relationship: part_of UBERON:0004876 {source="Obol"} ! urogenital fold + +[Term] +id: UBERON:0008843 +name: gubernaculum testis +def: "The fetal ligament attached to the inferior end of the epididymis and testis and, at its other end, to the bottom of the scrotum; it is present during, and is thought to guide, the descent of the testis into the scrotum and then atrophies." [BTO:0002813] +synonym: "gubernaculum" BROAD [MA:0003248] +synonym: "Hunter's gubernaculum" RELATED [BTO:0002813] +synonym: "male gubernaculum" EXACT [] +xref: BTO:0002813 +xref: EMAPA:19089 +xref: FMA:20421 +xref: http://www.snomedbrowser.com/Codes/Details/299983007 +xref: MA:0003248 +is_a: UBERON:0004346 ! gubernaculum (male or female) +intersection_of: UBERON:0004346 ! gubernaculum (male or female) +intersection_of: part_of UBERON:0000079 ! male reproductive system +relationship: attaches_to UBERON:0000473 ! testis +relationship: attaches_to UBERON:0001300 ! scrotum +relationship: attaches_to UBERON:0001301 ! epididymis +relationship: part_of UBERON:0000079 ! male reproductive system + +[Term] +id: UBERON:0008844 +name: gubernaculum (female) +def: "A gubernaculum that is part of a female reproductive system." [OBOL:automatic] +comment: The upper part of the gubernaculum, together with the ovarian artery and vein form the suspensory ligament of the ovary,[1] which suspends the ovary from the pelvic wall.; The lower gubernaculum has two vestigial remnants in females, the ovarian ligament and the round ligament of the uterus (ligamentum teres uteri) which respectively serve to support the ovaries and uterus in the pelvis +synonym: "female gubernaculum" EXACT [] +synonym: "gubernaculum ovarii" RELATED [] +is_a: UBERON:0004346 ! gubernaculum (male or female) +intersection_of: UBERON:0004346 ! gubernaculum (male or female) +intersection_of: part_of UBERON:0000474 ! female reproductive system +relationship: attaches_to UBERON:0000992 ! ovary +relationship: attaches_to UBERON:0000995 ! uterus +relationship: part_of UBERON:0000474 ! female reproductive system + +[Term] +id: UBERON:0008845 +name: nonskeletal ligament +def: "A ligament that does not connect two skeletal elements." [http://orcid.org/0000-0002-6601-2165] +synonym: "fibrous ligament" RELATED [http://en.wikipedia.org/wiki/Ligament] +synonym: "non-skeletal ligament" EXACT [] +xref: FMA:25625 +xref: http://www.snomedbrowser.com/Codes/Details/410746001 +xref: MA:0003004 +is_a: UBERON:0000211 {source="cjm"} ! ligament +disjoint_from: UBERON:0008846 ! skeletal ligament + +[Term] +id: UBERON:0008846 +name: skeletal ligament +def: "Dense regular connective tissue connecting two or more adjacent skeletal elements[VSAO,modified]." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, http://orcid.org/0000-0002-6601-2165] +synonym: "articular larua" EXACT [http://en.wikipedia.org/wiki/Ligament] +synonym: "articular ligament" EXACT [http://en.wikipedia.org/wiki/Ligament] +synonym: "ligament" BROAD [VSAO:0000072, ZFA:0001675] +synonym: "true ligament" EXACT [http://en.wikipedia.org/wiki/Ligament] +xref: AAO:0010444 +xref: AEO:0000090 +xref: Articular_ligaments +xref: CALOHA:TS-2146 +xref: EHDAA2:0003232 +xref: EV:0100144 +xref: FMA:25624 +xref: GAID:118 +xref: http://www.snomedbrowser.com/Codes/Details/410744003 +xref: MA:0003005 +xref: VSAO:0000072 +is_a: UBERON:0000211 ! ligament +intersection_of: UBERON:0000211 ! ligament +intersection_of: connects UBERON:0004765 ! skeletal element +intersection_of: part_of UBERON:0001434 ! skeletal system +relationship: composed_primarily_of UBERON:0007846 {source="VSAO"} ! dense regular connective tissue +relationship: connects UBERON:0004765 {notes="bones or cartilage organs"} ! skeletal element +relationship: part_of UBERON:0001434 ! skeletal system + +[Term] +id: UBERON:0008847 +name: ovarian ligament +def: "A fibrous ligament that connects the ovary to the lateral surface of the uterus." [http://en.wikipedia.org/wiki/Ovarian_ligament] +comment: The ligament runs in the broad ligament of the uterus, which is a fold of peritoneum rather than a fibrous ligament. Specifically, it is located in the parametrium +synonym: "ligament of ovary" EXACT [FMA:55422] +synonym: "ligamentum ovarii proprium" EXACT LATIN [FMA:TA] +synonym: "proper ovarian ligament" EXACT [FMA:55422] +xref: FMA:55422 +xref: http://www.snomedbrowser.com/Codes/Details/279915004 +xref: Ovarian:ligament +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0008845 {source="FMA"} ! nonskeletal ligament +relationship: attaches_to UBERON:0000992 ! ovary +relationship: attaches_to UBERON:0000995 ! uterus +relationship: develops_from UBERON:0004346 {notes="lower gubernaculum", source="Wikipedia"} ! gubernaculum (male or female) +relationship: part_of UBERON:0000474 ! female reproductive system + +[Term] +id: UBERON:0008848 +name: cranial suspensory ligament +def: "Connects the cranial tip of the future gonad to the dorsocranial abdominal cavity." [http://orcid.org/0000-0002-6601-2165] +xref: EMAPA:30068 +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0008841 {source="Obol"} ! suspensory ligament +relationship: part_of UBERON:0003135 {source="EMAPA"} ! male reproductive organ + +[Term] +id: UBERON:0008851 +name: ectoplacental cavity +def: "closed space within the ectoplacental cone, formed by the fusion of the parts of the amniotic fold that separate it from the amniotic cavity[MP]. a developmental cavity that exists in some mammals and is derived by division of the proamniotic space; it is further removed from the embryo than the amniotic cavity in some mammals" [http://www.medilexicon.com/medicaldictionary.php?s=epamniotic+cavity, MP:0011207] +subset: pheno_slim +synonym: "epamniotic cavity" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=epamniotic+cavity] +synonym: "epamniotic cavity" RELATED [MP:0011207] +xref: EMAPA:16080 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0004364 ! ectoplacental cone +relationship: luminal_space_of UBERON:0004364 ! ectoplacental cone +relationship: part_of UBERON:0004364 ! ectoplacental cone + +[Term] +id: UBERON:0008852 +name: visceral yolk sac +def: "extraembryonic tissue membrane, formed from the visceral endoderm and the extraembryonic mesoderm, which is located ventral to the embryonic disc and is connected to the presumptive midgut of the embryo; the yolk that it contains is the site of embryonic hematopoiesis and vitelline circulation is involved in early embryonic circulation; it is the origin of the primordial germ cells" [MP:0001718] +subset: pheno_slim +synonym: "secondary yolk sac" EXACT [MP:0001718] +synonym: "umbilical vesicle" EXACT [MP:0001718] +synonym: "vitelline sac" EXACT [MP:0001718] +synonym: "yolk sac" BROAD [MP:0001718] +xref: FMA:296715 +is_a: UBERON:0001040 ! yolk sac + +[Term] +id: UBERON:0008853 +name: parietal yolk sac +def: "tissue that consists of two cellular layers (parietal endoderm and trophoblast) separated by a relatively thick nonvascular basement membrane (Reichert's membrane), and acts as a protective layer to supports and facilitates transport of nutrients between the uterine tissue and the yolk sac cavity." [http://www.ncbi.nlm.nih.gov/pubmed/1150659, http://www.ncbi.nlm.nih.gov/pubmed/21123814, MP:0011203] +subset: pheno_slim +synonym: "primary yolk sac" EXACT [MP:0011203] +xref: EHDAA2:0003237 +xref: FMA:296713 +is_a: UBERON:0001040 ! yolk sac + +[Term] +id: UBERON:0008854 +name: root of molar tooth +def: "The part of a molar tooth that is implanted in the gum; mandibular and maxillary molars usually have two and three roots, respectively." [MP:0011165] +subset: pheno_slim +synonym: "molar root" EXACT [MP:0011166] +synonym: "molar tooth root" EXACT [FMA:85302] +xref: EMAPA:37948 {source="MA:th"} +xref: FMA:85302 +is_a: UBERON:0003677 ! tooth root +intersection_of: UBERON:0003677 ! tooth root +intersection_of: part_of UBERON:0003655 ! molar tooth +relationship: part_of UBERON:0003655 ! molar tooth + +[Term] +id: UBERON:0008855 +name: placenta metrial gland +def: "A group of granular epithelial cells in the uterine muscle beneath the placenta that develops during pregnancy in rodents and some other species." [MP:0010777] +subset: organ_slim +subset: pheno_slim +xref: MA:0001723 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005398 ! female reproductive gland +relationship: part_of UBERON:0002450 {source="MP"} ! decidua + +[Term] +id: UBERON:0008856 +name: stomach muscularis externa +def: "The smooth muscle layer of the stomach wall that functions to churn and mix food and gastric secretions as well as to move food along the digestive tract to the intestines" [MP:0010779] +subset: pheno_slim +synonym: "gastric muscularis" EXACT [FMA:14909] +synonym: "muscle layer of stomach" EXACT [FMA:14909] +synonym: "muscularis externa of stomach" EXACT [FMA:14909] +synonym: "tunica muscularis (gaster)" EXACT [FMA:14909] +synonym: "tunica muscularis gastris" EXACT [] +xref: FMA:14909 +xref: http://www.snomedbrowser.com/Codes/Details/362132003 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0018261 ! muscular coat of digestive tract +is_a: UBERON:0034933 ! layer of smooth muscle tissue +intersection_of: UBERON:0006660 ! muscular coat +intersection_of: part_of UBERON:0001167 ! wall of stomach +relationship: contributes_to_morphology_of UBERON:0001135 ! smooth muscle tissue +relationship: contributes_to_morphology_of UBERON:0001167 ! wall of stomach +relationship: part_of UBERON:0004222 {source="MA-abduced"} ! stomach smooth muscle + +[Term] +id: UBERON:0008857 +name: stomach smooth muscle circular layer +def: "The middle layer of the muscularis; it is continuous with the circular layer of the esophagus, but is absent in the fundus and lies concentric to the longitudinal axis of the stomach; the circular layer is normally tonically constricted forming a functional pyloric sphincter, which controls the movement of chyme into the duodenum" [MP:0010780] +subset: pheno_slim +synonym: "circular layer of gastric muscularis" EXACT [FMA:14911] +synonym: "circular muscle layer of stomach" EXACT [FMA:14911] +synonym: "middle circular muscle layer of stomach" EXACT [] +synonym: "stratum circulare (tunica muscularis)(gaster)" EXACT [FMA:14911] +synonym: "stratum circulare gastris" EXACT [] +synonym: "stratum circulare tunicae muscularis gastricae" EXACT LATIN [FMA:14911, FMA:TA] +xref: FMA:14911 +xref: http://www.snomedbrowser.com/Codes/Details/2746007 +xref: MA:0001628 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0012368 ! circular muscle layer of muscular coat +relationship: contributes_to_morphology_of UBERON:0008856 ! stomach muscularis externa +relationship: deep_to UBERON:0002439 ! myenteric nerve plexus +relationship: part_of UBERON:0008856 {source="FMA"} ! stomach muscularis externa +relationship: superficial_to UBERON:0008862 ! stomach smooth muscle inner oblique layer + +[Term] +id: UBERON:0008858 +name: pyloric canal +def: "The short narrow part of the stomach extending from the pyloric antrum to the pyloric sphincter" [http://en.wikipedia.org/wiki/Pyloric_canal, MP:0010791] +subset: pheno_slim +synonym: "canalis pyloricus" EXACT [http://en.wikipedia.org/wiki/Pyloric_canal] +synonym: "canalis pyloricus" RELATED LATIN [http://en.wikipedia.org/wiki/Pyloric_canal] +xref: EMAPA:37944 {source="MA:th"} +xref: FMA:14580 +xref: http://www.snomedbrowser.com/Codes/Details/245417002 +xref: Pyloric:canal +is_a: UBERON:0009870 {source="FMA"} ! zone of stomach +relationship: continuous_with UBERON:0001165 ! pyloric antrum +relationship: continuous_with UBERON:0001202 ! pyloric sphincter +relationship: contributes_to_morphology_of UBERON:0001166 ! pylorus +relationship: part_of UBERON:0001166 {source="Wikipedia"} ! pylorus + +[Term] +id: UBERON:0008859 +name: cardiac gastric gland +def: "A gastric gland in the cardiac region of the stomach; cardiac glands are fewer in number than in the fundus and body, and secrete mucin which coats the stomach and protects it[MP]" [http://en.wikipedia.org/wiki/Cardiac_glands, MP:0010795] +subset: organ_slim +subset: pheno_slim +synonym: "cardiac gland" RELATED [FMA:14920] +synonym: "gardiac gland" EXACT [ISBN:0073040584] +synonym: "gastric cardiac gland" EXACT [FMA:14920] +synonym: "gastric cardiac mucuous gland" EXACT [] +synonym: "gastric gland of cardia" EXACT [FMA:14920] +synonym: "glandula cardiaca (gaster)" EXACT [FMA:14920] +xref: Cardiac:glands +xref: EMAPA:37459 {source="MA:th"} +xref: FMA:14920 +xref: http://www.snomedbrowser.com/Codes/Details/8894005 +is_a: UBERON:0000325 ! gastric gland +is_a: UBERON:0000414 {source="MP"} ! mucous gland +intersection_of: UBERON:0000325 ! gastric gland +intersection_of: part_of UBERON:0001162 ! cardia of stomach +relationship: contributes_to_morphology_of UBERON:0001162 ! cardia of stomach +relationship: part_of UBERON:0004996 {source="FMA"} ! mucosa of cardia of stomach + +[Term] +id: UBERON:0008860 +name: intermediate gastric gland +def: "Any of the branched tubular glands in the mucosa of the fundus and body of the stomach that secrete most of the digestive substances secreted by the stomach" [MP:0010796] +subset: pheno_slim +is_a: UBERON:0010038 ! fundic gastric gland + +[Term] +id: UBERON:0008861 +name: pyloric gastric gland +def: "The gastric glands in the pyloric region of the stomach; the pyloric glands secrete mucin, which coats the stomach and protects it, and hormones such as gastrin and enkephalin[MP]." [http://en.wikipedia.org/wiki/Pyloric_gland, MP:0010797] +subset: pheno_slim +synonym: "glandula pylorica" EXACT [FMA:14922] +synonym: "pyloric antrum gland" EXACT [OBOL:automatic] +synonym: "pyloric gland" EXACT [FMA:14922] +synonym: "pyloric mucuous gland" EXACT [] +xref: EMAPA:27211 +xref: FMA:14922 +xref: http://linkedlifedata.com/resource/umls/id/C0227239 +xref: http://www.snomedbrowser.com/Codes/Details/70710007 +xref: NCIT:C33431 +xref: Pyloric:gland +xref: UMLS:C0227239 {source="ncithesaurus:Pyloric_Gland"} +is_a: UBERON:0000325 ! gastric gland +is_a: UBERON:0000414 {source="MP"} ! mucous gland +intersection_of: UBERON:0000325 ! gastric gland +intersection_of: part_of UBERON:0001166 ! pylorus +relationship: contributes_to_morphology_of UBERON:0001166 ! pylorus +relationship: part_of UBERON:0004998 ! mucosa of pylorus + +[Term] +id: UBERON:0008862 +name: stomach smooth muscle inner oblique layer +def: "The innermost layer of the muscularis; it is not present in all sections of the stomach but is clearly seen in the fundus and near the lesser curvature of the corpus; the oblique fibers disappear distally (towards the pyloric antrum); the oblique layer is responsible for creating the motion that churns and physically breaks down the food" [MP:0010804] +comment: The only layer of the three which is not seen in other parts of the digestive system[WP]. +subset: pheno_slim +synonym: "inner oblique muscle layer of stomach" EXACT [] +synonym: "oblique fiber layer of gastric muscularis" EXACT [FMA:14912] +synonym: "oblique muscle layer of stomach" EXACT [FMA:14912] +xref: EMAPA:37965 {source="MA:th"} +xref: FMA:14912 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0034933 ! layer of smooth muscle tissue +relationship: contributes_to_morphology_of UBERON:0008856 ! stomach muscularis externa +relationship: deep_to UBERON:0008857 ! stomach smooth muscle circular layer +relationship: part_of UBERON:0008856 {source="MP"} ! stomach muscularis externa + +[Term] +id: UBERON:0008863 +name: stomach smooth muscle outer longitudinal layer +def: "The most superficial layer of the muscularis; it has two sections, a longitudinal layer that is common with the esophagus and ends in the corpus, and a longitudinal layer that originates in the corpus and spreads into the duodenum" [http://medimagery.com/anatomy/stomach/layers-of-the-stomach.html, MP:0010805] +subset: pheno_slim +synonym: "longitudinal layer of gastric muscularis" EXACT [FMA:14910] +synonym: "muscle layer 1 of stomach" EXACT [] +synonym: "outer longitudinal muscle layer of stomach" EXACT [] +synonym: "stratum longitudinale (tunica muscularis)(gaster)" EXACT LATIN [FMA:14910] +synonym: "stratum longitudinale tunicae muscularis gastricae" EXACT LATIN [FMA:14910, FMA:TA] +xref: EMAPA:37966 {source="MA:th"} +xref: FMA:14910 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0012369 ! longitudinal muscle layer of muscular coat +relationship: contributes_to_morphology_of UBERON:0008856 ! stomach muscularis externa +relationship: part_of UBERON:0008856 ! stomach muscularis externa +relationship: superficial_to UBERON:0002439 ! myenteric nerve plexus + +[Term] +id: UBERON:0008866 +name: enamel knot +def: "A transient cluster of cells in the central part of the dental epithelium facing the dental mesenchyme, which acts as an organizing center, providing positional information for tooth morphogenesis and regulating the growth of tooth cusps" [MP:0010864] +subset: pheno_slim +xref: BTO:0005791 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0034922 ! cell cluster +relationship: contributes_to_morphology_of UBERON:0005176 ! tooth enamel organ +relationship: part_of UBERON:0003843 ! dental epithelium + +[Term] +id: UBERON:0008867 +name: trabecular network of bone +def: "The network of intersecting plates and spicules in cancellous bone which form a meshwork of intercommunicating spaces filled with blood vessels and marrow; in mature bone, the trabeculae are aligned in parallel with the lines of major compressive or tensile force" [MP:0010867] +subset: pheno_slim +synonym: "bone trabecula" RELATED [MP:0010867] +synonym: "bone trabeculae" RELATED [MP:0010867] +xref: http://linkedlifedata.com/resource/umls/id/C2826619 +xref: NCIT:C82999 +xref: UMLS:C2826619 {source="ncithesaurus:Bone_Trabeculae"} +is_a: UBERON:0000479 ! tissue +relationship: contributes_to_morphology_of UBERON:0002483 ! trabecular bone tissue +relationship: part_of UBERON:0002483 {source="MP"} ! trabecular bone tissue + +[Term] +id: UBERON:0008870 +name: pulmonary alveolar parenchyma +def: "The distinguishing cell types of the lung alveolar tissue, including pulmonary epithelial cells (pneumocytes), alveolar capillary endothelial cells, interstitial cells (fibroblasts) and alveolar macrophages" [MP:0010901] +subset: pheno_slim +xref: EMAPA:37942 {source="MA:th"} +is_a: UBERON:0008946 ! lung parenchyma +intersection_of: UBERON:0000353 ! parenchyma +intersection_of: part_of UBERON:0002299 ! alveolus of lung +relationship: contributes_to_morphology_of UBERON:0006524 ! alveolar system +relationship: part_of UBERON:0002299 ! alveolus of lung + +[Term] +id: UBERON:0008873 +name: alveolar pore +def: "The openings in the alveolar septum that permit air flow between adjacent alveoli" [MP:0010904] +subset: pheno_slim +xref: EMAPA:37391 {source="MA:th"} +is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: part_of UBERON:0002299 ! alveolus of lung + +[Term] +id: UBERON:0008874 +name: pulmonary acinus +def: "The part of the airway consisting of a respiratory bronchiole and all of its branches" [http://en.wikipedia.org/wiki/Acinus#The_Lungs, MP:0010911] +subset: pheno_slim +synonym: "acinus pulmonaris" EXACT LATIN [FMA:7313, FMA:TA] +synonym: "arbor alveolaris" EXACT LATIN [FMA:7313, FMA:TA] +synonym: "lobulus pulmonis primarius" EXACT LATIN [FMA:7313, FMA:TA] +synonym: "primary pulmonary lobule" EXACT [FMA:7313] +synonym: "respiratory lobule" EXACT [] +xref: EMAPA:37941 {source="MA:th"} +xref: FMA:7313 +xref: http://linkedlifedata.com/resource/umls/id/C0225696 +xref: http://www.snomedbrowser.com/Codes/Details/361365004 +xref: NCIT:C33426 +xref: The_Lungs +xref: UMLS:C0225696 {source="ncithesaurus:Pulmonary_Acinus"} +is_a: UBERON:0010368 {source="FMA"} ! pulmonary lobule + +[Term] +id: UBERON:0008876 +name: hypodermis skeletal muscle layer +alt_id: UBERON:0010934 +def: "Any skeletal muscle organ in the hypodermis / superficial fascia" [ISBN:0123813611, MP:0011157] +subset: pheno_slim +synonym: "hypodermal muscle layer" EXACT [MP:0011157] +synonym: "hypodermis muscle layer" EXACT [MP:0011157] +synonym: "panniculus carnosus" NARROW [MP:0011157] +synonym: "superficial fascia muscular layer" EXACT [] +xref: EMAPA:18188 +xref: MA:0003140 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004253 ! skin muscle +is_a: UBERON:0014892 ! skeletal muscle organ +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0002072 ! hypodermis +relationship: contributes_to_morphology_of UBERON:0001015 ! musculature +relationship: contributes_to_morphology_of UBERON:0002072 ! hypodermis +relationship: has_muscle_insertion UBERON:0002097 ! skin of body +relationship: located_in UBERON:0002190 {source="MP-def"} ! subcutaneous adipose tissue +relationship: part_of UBERON:0002072 ! hypodermis + +[Term] +id: UBERON:0008877 +name: epidermal-dermal junction +def: "The multi-layer basement membrane between the dermis and epidermis that serves to adhere the dermis and epidermis, provide mechanical support for the epidermis, and forms a barrier to cells and large molecules across the junction" [MP:0011159] +subset: pheno_slim +synonym: "dermal-epidermal junction" EXACT [FMA:70963] +synonym: "dermo-epidermal junction" EXACT [] +synonym: "dermoepidermal junction" EXACT [FMA:70963] +synonym: "epidermal dermol junction" EXACT [] +xref: EMAPA:37866 {source="MA:th"} +xref: FMA:70963 +xref: http://www.snomedbrowser.com/Codes/Details/51025007 +xref: NCIT:C62356 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005769 ! basement membrane of epithelium +relationship: adjacent_to UBERON:0001003 ! skin epidermis +relationship: adjacent_to UBERON:0002067 ! dermis +relationship: contributes_to_morphology_of UBERON:0000014 ! zone of skin +relationship: part_of UBERON:0000014 {source="MP"} ! zone of skin + +[Term] +id: UBERON:0008878 +name: palmar part of manus +subset: pheno_slim +synonym: "front of hand" EXACT [FMA:24920] +synonym: "palm" EXACT [FMA:24920] +synonym: "palm of hand" EXACT [FMA:24920] +synonym: "palmar region" EXACT [FMA:24920] +synonym: "regio palmaris" EXACT LATIN [FMA:TA] +xref: FMA:24920 +xref: galen:Palm +xref: http://linkedlifedata.com/resource/umls/id/C0931849 +xref: NCIT:C33252 +xref: UMLS:C0931849 {source="ncithesaurus:Palmar_Region"} +is_a: UBERON:0005451 {source="FMA"} ! segment of manus +is_a: UBERON:0008837 ! palmar/plantar part of autopod + +[Term] +id: UBERON:0008879 +name: ligament of pinna +synonym: "auricular ligament" EXACT [MA:0001228] +synonym: "ligament of auricle" EXACT [FMA:61035] +synonym: "pinna ligament" EXACT [FMA:61035] +xref: EMAPA:37434 {source="MA:th"} +xref: FMA:61035 +xref: http://www.snomedbrowser.com/Codes/Details/362548009 +xref: MA:0001228 +is_a: UBERON:0008846 {source="FMA"} ! skeletal ligament +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001757 {source="MA"} ! pinna + +[Term] +id: UBERON:0008880 +name: annelid pygidium +def: "Rearmost segment of annelid worms." [http://en.wikipedia.org/wiki/Annelid#Segmentation] +synonym: "periproct" BROAD [http://en.wikipedia.org/wiki/Periproct] +synonym: "pygidium" RELATED [http://en.wikipedia.org/wiki/Annelid#Segmentation] +xref: http://en.wikipedia.org/wiki/Periproct +is_a: UBERON:0000914 ! organismal segment + +[Term] +id: UBERON:0008881 +name: rostral migratory stream +def: "Unique telencephalic subventricular zones that extend from the lateral ventricles into the olfactory bulbs. Newly produced GABAergic interneurons migrate along the RMS and settle in the bulb." [BIRNLEX:1702, http://www.ncbi.nlm.nih.gov/pubmed/12453055] +subset: pheno_slim +synonym: "RMS" RELATED ABBREVIATION [BTO:0003412] +synonym: "rostral migratory pathway" RELATED [http://en.wikipedia.org/wiki/Rostral_migratory_stream] +xref: BIRNLEX:1702 +xref: BTO:0003412 +xref: DHBA:10556 +xref: http://en.wikipedia.org/wiki/Rostral_migratory_stream +xref: PBA:128012584 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: connects UBERON:0002264 {source="MP-modified"} ! olfactory bulb +relationship: connects UBERON:0004922 ! postnatal subventricular zone +relationship: part_of UBERON:0001893 ! telencephalon + +[Term] +id: UBERON:0008882 +name: spinal cord commissure +def: "The nerve fiber tracts that span the midline of the spinal cord" [MP:0009694] +subset: pheno_slim +xref: EMAPA:37955 {source="MA:th"} +is_a: UBERON:0001020 ! nervous system commissure +is_a: UBERON:0007699 ! tract of spinal cord +intersection_of: UBERON:0001020 ! nervous system commissure +intersection_of: part_of UBERON:0002240 ! spinal cord +relationship: contributes_to_morphology_of UBERON:0002240 ! spinal cord + +[Term] +id: UBERON:0008883 +name: osteoid +def: "Bone tissue that is an unmineralized bone matrix deposited by osteoblasts prior to the mineralization of bone tissue." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000046] +subset: pheno_slim +synonym: "osteoid tissue" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "pre-bone" EXACT [PSPUB:0000170] +synonym: "prebone" EXACT [VSAO:curator] +synonym: "prebone tissue" EXACT [FMA:66830, MP:0002113] +xref: EMAPA:37923 {source="MA:th"} +xref: FMA:66830 +xref: galen:Osteoid +xref: http://en.wikipedia.org/wiki/Osteoid +xref: http://linkedlifedata.com/resource/umls/id/C0682561 +xref: http://www.snomedbrowser.com/Codes/Details/39365008 +xref: NCIT:C33228 +xref: UMLS:C0682561 {source="ncithesaurus:Osteoid"} +xref: VSAO:0000046 +xref: XAO:0004035 +is_a: UBERON:0002481 {source="VSAO"} ! bone tissue + +[Term] +id: UBERON:0008884 +name: left putamen +def: "A putamen that is part of a left cerebral hemisphere." [OBOL:automatic] +xref: FMA:72829 +xref: HBA:4288 +is_a: UBERON:0001874 ! putamen +intersection_of: UBERON:0001874 ! putamen +intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere +relationship: part_of UBERON:0002812 ! left cerebral hemisphere + +[Term] +id: UBERON:0008885 +name: right putamen +def: "A putamen that is part of a right cerebral hemisphere." [OBOL:automatic] +xref: FMA:72828 +xref: HBA:4289 +is_a: UBERON:0001874 ! putamen +intersection_of: UBERON:0001874 ! putamen +intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere +relationship: part_of UBERON:0002813 ! right cerebral hemisphere + +[Term] +id: UBERON:0008886 +name: pulmonary vascular system +def: "The part of the cardiovascular system consisting of all pulmonary arteries and all pulmonary veins." [http://en.wikipedia.org/wiki/Pulmonary_circulation, ISBN:0073040584] +synonym: "pulmonary circulatory system" EXACT [FMA:45621] +synonym: "pulmonary system" EXACT [ISBN:0073040584] +xref: FMA:45621 +xref: Pulmonary:circulation +is_a: UBERON:0007798 {source="Obol"} ! vascular system +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: has_part UBERON:0002012 ! pulmonary artery +relationship: has_part UBERON:0002016 ! pulmonary vein + +[Term] +id: UBERON:0008887 +name: rectal venous plexus +def: "The hemorrhoidal plexus (or rectal venous plexus) surrounds the rectum, and communicates in front with the vesical venous plexus in the male, and the uterovaginal plexus in the female. A free communication between the portal and systemic venous systems is established through the hemorrhoidal plexus." [http://en.wikipedia.org/wiki/Rectal_venous_plexus] +synonym: "haemorrhoidal plexus" RELATED [http://en.wikipedia.org/wiki/Rectal_venous_plexus] +synonym: "hemorrhoidal plexus" RELATED [http://en.wikipedia.org/wiki/Rectal_venous_plexus] +synonym: "plexus haemorrhoidalis" RELATED LATIN [http://en.wikipedia.org/wiki/Rectal_venous_plexus] +synonym: "plexus venosus rectalis" RELATED LATIN [http://en.wikipedia.org/wiki/Rectal_venous_plexus] +xref: FMA:18933 +xref: http://en.wikipedia.org/wiki/Rectal_venous_plexus +xref: http://linkedlifedata.com/resource/umls/id/C0226766 +xref: http://www.snomedbrowser.com/Codes/Details/303051005 +xref: NCIT:C32728 +xref: UMLS:C0226766 {source="ncithesaurus:Hemorrhoidal_Plexus"} +is_a: UBERON:0001593 {source="FMA"} ! venous plexus +intersection_of: UBERON:0001593 ! venous plexus +intersection_of: surrounds UBERON:0001052 ! rectum +relationship: surrounds UBERON:0001052 ! rectum + +[Term] +id: UBERON:0008888 +name: vesical venous plexus +def: "The vesical plexus envelops the lower part of the bladder and the base of the prostate and communicates with the pudendal and prostatic plexuses. It is drained, by means of several vesical veins, into the hypogastric veins." [http://en.wikipedia.org/wiki/Vesical_venous_plexus] +synonym: "plexus venosus vesicalis" RELATED LATIN [http://en.wikipedia.org/wiki/Vesical_venous_plexus] +xref: FMA:18934 +xref: http://en.wikipedia.org/wiki/Vesical_venous_plexus +xref: http://www.snomedbrowser.com/Codes/Details/31510008 +is_a: UBERON:0001593 {source="FMA"} ! venous plexus +is_a: UBERON:0002201 ! vasculature of trunk +relationship: part_of UBERON:0002355 ! pelvic region of trunk +relationship: part_of UBERON:0002460 ! vesical vein +relationship: tributary_of UBERON:0002460 ! vesical vein + +[Term] +id: UBERON:0008889 +name: uterine venous plexus +def: "The uterine plexuses lie along the sides and superior angles of the uterus between the two layers of the broad ligament, and communicate with the ovarian and vaginal plexuses. They are drained by a pair of uterine veins on either side: these arise from the lower part of the plexuses, opposite the external orifice of the uterus, and open into the corresponding hypogastric vein." [http://en.wikipedia.org/wiki/Uterine_venous_plexus] +synonym: "plexus venosus uterinus" RELATED LATIN [http://en.wikipedia.org/wiki/Uterine_venous_plexus] +synonym: "uterine plexus" RELATED [http://en.wikipedia.org/wiki/Uterine_venous_plexus] +xref: FMA:29712 +xref: http://en.wikipedia.org/wiki/Uterine_venous_plexus +xref: http://www.snomedbrowser.com/Codes/Details/294553007 +is_a: UBERON:0001593 {source="FMA"} ! venous plexus + +[Term] +id: UBERON:0008891 +name: external gill +def: "External gills are the gills of an animal, most typically an amphibian, that are exposed to the environment, rather than set inside the pharynx and covered by gill slits, as they are in most fishes[BTO]." [BTO:0004689, http://en.wikipedia.org/wiki/External_gills] +xref: AAO:0010174 +xref: BTO:0004689 +xref: External:gills +xref: XAO:0000120 +is_a: UBERON:0002535 {source="BTO"} ! gill +is_a: UBERON:0003102 {source="XAO"} ! surface structure + +[Term] +id: UBERON:0008892 +name: internal gill +xref: AAO:0010176 +is_a: UBERON:0002535 {source="AAO"} ! gill + +[Term] +id: UBERON:0008894 +name: pharyngeal gill precursor +def: "A primordium or bud that develops into a gill." [http://orcid.org/0000-0002-6601-2165] +synonym: "external gill anlage" RELATED [XAO:0000448] +synonym: "gill primordium" EXACT [XAO:0000448] +synonym: "internal gill bud" EXACT [ZFA:0001107] +synonym: "internal gill buds" RELATED PLURAL [ZFA:0001107] +xref: TAO:0001107 +xref: XAO:0000448 +xref: ZFA:0001107 +is_a: UBERON:0001048 {source="XAO"} ! primordium +relationship: develops_from UBERON:0003114 {source="XAO"} ! pharyngeal arch 3 +relationship: develops_from UBERON:0003115 {source="XAO"} ! pharyngeal arch 4 +relationship: develops_from UBERON:0004117 {source="ZFA"} ! pharyngeal pouch + +[Term] +id: UBERON:0008895 +name: splanchnocranium +def: "Subdivision of endoskeleton derived from pharyngeal arches" [http://en.wikipedia.org/wiki/Facial_skeleton, https://orcid.org/0000-0002-6601-2165, ISBN:0073040584] +synonym: "branchial arch skeleton" RELATED [] +synonym: "gill arch skeleton" RELATED [] +synonym: "pharyngeal arch" RELATED INCONSISTENT [VSAO:0000149] +synonym: "pharyngeal arch skeleton" RELATED [ZFA:0001216] +synonym: "pharyngeal endoskeleton" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "pharyngeal skeleton" RELATED [ZFA:0001216] +synonym: "visceral cranium" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "visceral skeletal system" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "visceral skeleton" RELATED [UBERONREF:0000007] +synonym: "viscerocranium" EXACT INCONSISTENT [http://en.wikipedia.org/wiki/Viscerocranium, VHOG:0000315, ZFA:0001216] +xref: AAO:0010157 +xref: Facial:skeleton +xref: TAO:0001216 +xref: VHOG:0000315 +xref: VSAO:0000149 +xref: XAO:0003176 +xref: ZFA:0001216 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011159 ! primary subdivision of cranial skeletal system +disjoint_from: UBERON:0011156 ! facial skeleton +relationship: develops_from UBERON:0002539 {source="https://github.com/obophenotype/uberon/issues/83"} ! pharyngeal arch +relationship: has_developmental_contribution_from UBERON:0003099 {notes="redundant", source="http://www.ncbi.nlm.nih.gov/pubmed/11237469", source="Grays"} ! cranial neural crest + +[Term] +id: UBERON:0008896 +name: post-hyoid pharyngeal arch +def: "A pharyngeal arch that is posterior to the hyoid arch. i.e. any pharyngeal arch with a number 3 or higher." [https://orcid.org/0000-0002-6601-2165] +subset: efo_slim +synonym: "branchial arch" EXACT [ZFA:0001613] +synonym: "branchial arches" EXACT PLURAL [ZFA:0001613] +synonym: "branchial bar" EXACT [ZFA:0001613] +synonym: "branchial bars" EXACT PLURAL [ZFA:0001613] +synonym: "gill arch" EXACT [ZFA:0001613] +synonym: "gill arches 1-5" EXACT [ZFA:0001613] +synonym: "gill bar" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "pharyngeal arch 3-7" EXACT [ZFA:0001613] +synonym: "visceral arches 3-7" EXACT [ZFA:0001613] +xref: AAO:0010362 +xref: BTO:0002152 +xref: EFO:0003694 +xref: http://www.snomedbrowser.com/Codes/Details/308766004 +xref: TAO:0001597 +xref: XAO:0000099 +xref: ZFA:0001613 +is_a: UBERON:0002539 ! pharyngeal arch +intersection_of: UBERON:0002539 ! pharyngeal arch +intersection_of: posterior_to UBERON:0003066 ! pharyngeal arch 2 +relationship: posterior_to UBERON:0003066 ! pharyngeal arch 2 + +[Term] +id: UBERON:0008897 +name: fin +def: "An external projection of an aquatic animal as a fish used in propelling or guiding the body[BTO]." [BTO:0004649, http://en.wikipedia.org/wiki/Fin] +subset: efo_slim +synonym: "fins" RELATED PLURAL [ZFA:0000108] +xref: AAO:0010374 +xref: AEO:0001004 +xref: BTO:0004649 +xref: EFO:0000875 +xref: http://en.wikipedia.org/wiki/Fin +xref: http://www.snomedbrowser.com/Codes/Details/73003005 +xref: MAT:0000087 +xref: MESH:D058500 +xref: MIAA:0000087 +xref: OpenCyc:Mx4rvVjcBZwpEbGdrcN5Y29ycA +xref: TAO:0000108 +xref: VSAO:0000099 +xref: XAO:0000002 +xref: ZFA:0000108 +is_a: UBERON:0000026 ! appendage +intersection_of: UBERON:0000026 ! appendage +intersection_of: has_skeleton UBERON:0012353 ! fin skeleton +relationship: has_skeleton UBERON:0012353 ! fin skeleton + +[Term] +id: UBERON:0008902 +name: lateral recess of third vetricle +def: "Lateral protrusion of the third ventricle." [ZFIN:curator] +synonym: "lateral recess" BROAD PLURAL [ZFA:0000231] +synonym: "lateral recess of diencephalic ventricle" EXACT [ZFIN:ZDB-PUB-091221-27] +synonym: "lateral recesses" RELATED PLURAL [ZFA:0000231] +xref: TAO:0000231 +xref: ZFA:0000231 +is_a: UBERON:0000464 {source="ZFA"} ! anatomical space +relationship: part_of UBERON:0002286 {source="ZFA"} ! third ventricle + +[Term] +id: UBERON:0008904 +name: neuromast +def: "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements." [ZFIN:ZDB-PUB-961014-576] +subset: efo_slim +synonym: "cyatocïde@fr" EXACT [TAO:0000243] +synonym: "lateral line neuromast" EXACT [ZFA:0000243] +synonym: "lateral line organ" BROAD [ZFA:0000243] +synonym: "neuromast organ" EXACT [PHENOSCAPE:wd] +synonym: "neuromaste superficiel@fr" EXACT [TAO:0000243] +synonym: "neuromasts" EXACT PLURAL [ZFA:0000243] +xref: AAO:0001004 +xref: EFO:0003513 +xref: TAO:0000243 +xref: ZFA:0000243 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0035555 ! lateral line sense organ +relationship: develops_from UBERON:0009128 {source="https://doi.org/10.1038/ncomms1502"} ! lateral line placode +relationship: develops_from UBERON:2005227 ! protoneuromast +relationship: located_in UBERON:0001003 ! skin epidermis +relationship: part_of UBERON:0010202 ! lateral line +relationship: transformation_of UBERON:2005227 {source="ZFA"} ! protoneuromast + +[Term] +id: UBERON:0008906 +name: lateral line nerve +def: "Cranial nerves that carry afferent and efferent fibers for the lateral line system." [ZFIN:curator] +synonym: "lateral line nerves" EXACT PLURAL [ZFA:0001479] +xref: AAO:0010077 +xref: TAO:0001479 +xref: ZFA:0001479 +is_a: UBERON:0001785 ! cranial nerve +intersection_of: UBERON:0001785 ! cranial nerve +intersection_of: extends_fibers_into UBERON:0008904 ! neuromast +intersection_of: extends_fibers_into UBERON:3010706 ! lateral line nucleus +relationship: develops_from UBERON:0009128 {source="NCBIBook:NBK53175"} ! lateral line placode +relationship: extends_fibers_into UBERON:0008904 ! neuromast +relationship: extends_fibers_into UBERON:3010706 ! lateral line nucleus +relationship: part_of UBERON:0002540 ! lateral line system + +[Term] +id: UBERON:0008907 +name: dermal bone +def: "Skeletal element that forms superficially in the organism, usually in association with the ectoderm[VSAO]." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, https://github.com/obophenotype/uberon/issues/267, VSAO:0000130] +synonym: "dermal bones" RELATED PLURAL [ZFA:0001590] +xref: AAO:0010769 +xref: Dermal:bone +xref: TAO:0001590 +xref: VSAO:0000130 +xref: XAO:0004015 +xref: ZFA:0001590 +is_a: UBERON:0004756 {source="wd"} ! dermal skeletal element +is_a: UBERON:0007842 {source="VSAO"} ! membrane bone +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0010364 ! dermal skeleton +relationship: part_of UBERON:0010364 {source="VSAO"} ! dermal skeleton + +[Term] +id: UBERON:0008909 +name: perichordal bone +def: "Bone element that is adjacent to the notochord." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000307] +synonym: "perichordal bone" RELATED [ZFA:0001629] +synonym: "perichordal bones" EXACT PLURAL [ZFA:0001629] +xref: AAO:0010777 +xref: TAO:0001639 +xref: VSAO:0000307 +xref: ZFA:0001629 +is_a: UBERON:0012075 {notes="not in VSAO", source="ZFA"} ! replacement bone +intersection_of: UBERON:0001474 ! bone element +intersection_of: adjacent_to UBERON:0002328 ! notochord +disjoint_from: UBERON:0008913 ! perichondral bone +relationship: adjacent_to UBERON:0002328 ! notochord + +[Term] +id: UBERON:0008911 +name: chondral bone +def: "Replacement bone that forms within or surrounding a cartilaginous skeletal element." [https://github.com/obophenotype/uberon/issues/139, zfin:curator] +xref: AAO:0010774 +xref: ZFA:0001693 +is_a: UBERON:0012075 {source="ZFA"} ! replacement bone + +[Term] +id: UBERON:0008913 +name: perichondral bone +def: "Bone element that is located on the surface of a cartilage element." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000308] +comment: include the subtyping under 'replacement bone', for consistency with ZFA, but VSAO does not include this intermediate class +synonym: "perichondral bone" RELATED [ZFA:0001630] +synonym: "perichondral bones" EXACT PLURAL [ZFA:0001630] +xref: AAO:0010779 +xref: TAO:0001638 +xref: VSAO:0000308 +xref: ZFA:0001630 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0007842 {source="VSAO"} ! membrane bone +relationship: develops_from UBERON:0002222 {source="ZFA"} ! perichondrium + +[Term] +id: UBERON:0008915 +name: pore +def: "An anatomical space that is an opening, usually at the end of a canal or duct, on the surface of the integument or the lining of an internal anatomical space." [TAO:curator] +xref: AAO:0010441 +xref: http://linkedlifedata.com/resource/umls/id/C1325742 +xref: NCIT:C70672 +xref: TAO:0001791 +xref: UMLS:C1325742 {source="ncithesaurus:Pore"} +xref: ZFA:0005449 +is_a: UBERON:0000464 {source="ZFA"} ! anatomical space + +[Term] +id: UBERON:0008917 +name: ampullary organ +def: "Organ that consists of receptor cells located within an epidermal invagination and functions as an electroreceptor." [TAO:wd] +subset: organ_slim +synonym: "ampullary electroreceptor" EXACT [] +synonym: "ampullary electroreceptor organ" EXACT [TAO:0002104] +synonym: "ampullary receptor" BROAD [] +synonym: "electrosensory ampullary organ" EXACT [] +xref: AAO:0001006 +xref: TAO:0002104 +is_a: UBERON:0003103 {source="TAO"} ! compound organ +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0035555 ! lateral line sense organ +relationship: part_of UBERON:0010202 ! lateral line +relationship: present_in_taxon NCBITaxon:7746 +relationship: present_in_taxon NCBITaxon:7777 +relationship: present_in_taxon NCBITaxon:7900 +relationship: present_in_taxon NCBITaxon:7911 +relationship: present_in_taxon NCBITaxon:8289 +relationship: present_in_taxon NCBITaxon:8296 + +[Term] +id: UBERON:0008918 +name: ampulla of Lorenzini +def: "The ampullae of Lorenzini are special sensing organs called electroreceptors, forming a network of jelly-filled pores. Each ampulla consists of a canal opening to the surface by a pore in the skin and ending blindly in a cluster of small pockets full of special jelly. The ampullae are mostly clustered into groups inside the body, each cluster having ampullae connecting with different parts of the skin, but preserving a left-right symmetry. The canal lengths vary from animal to animal, but the distribution of the pores is generally specific to each species. The ampullae pores are plainly visible as dark spots in the skin. They provide fish with a sixth sense capable of detecting electromagnetic fields as well as temperature gradients[WP]." [http://en.wikipedia.org/wiki/Ampullae_of_Lorenzini] +subset: organ_slim +synonym: "ampullae of Lorenzini" EXACT PLURAL [http://en.wikipedia.org/wiki/Ampullae_of_Lorenzini] +xref: http://en.wikipedia.org/wiki/Ampullae_of_Lorenzini +is_a: UBERON:0003103 ! compound organ +is_a: UBERON:0035555 ! lateral line sense organ +relationship: present_in_taxon NCBITaxon:119203 + +[Term] +id: UBERON:0008919 +name: obsolete mesenchyme from somatopleure +is_obsolete: true +replaced_by: UBERON:0010377 + +[Term] +id: UBERON:0008920 +name: obsolete mesenchyme from splanchnopleure +is_obsolete: true +replaced_by: UBERON:0010378 + +[Term] +id: UBERON:0008921 +name: substratum of layer of retina +def: "." [http://retina.anatomy.upenn.edu/~lance/eye/retina_gross.html, UBERON:CL_meeting_20110725] +is_a: UBERON:0022303 ! nervous system cell part layer +relationship: part_of UBERON:0000966 ! retina + +[Term] +id: UBERON:0008922 +name: sublaminar layer S1 +def: "A retinal neural layer that is immediately adjacent to the inner nuclear layer and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] +xref: CP:0000113 +is_a: UBERON:0008927 ! sublaminar layers S1 or S2 +is_a: UBERON:0009732 ! sublaminar layers S1 or S2 or S5 +is_a: UBERON:0009733 ! sublaminar layers S1 or S2 or S3 +is_a: UBERON:0009735 ! sublaminar layers S1 or S3 or S4 +is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4 +intersection_of: UBERON:0008921 ! substratum of layer of retina +intersection_of: adjacent_to UBERON:0001791 ! inner nuclear layer of retina +intersection_of: adjacent_to UBERON:0008923 ! sublaminar layer S2 +relationship: adjacent_to UBERON:0001791 ! inner nuclear layer of retina +relationship: adjacent_to UBERON:0008923 ! sublaminar layer S2 + +[Term] +id: UBERON:0008923 +name: sublaminar layer S2 +def: "A retinal neural layer that is immediately adjacent to the S1 and S3 layers and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] +xref: CP:0000114 +is_a: UBERON:0008927 ! sublaminar layers S1 or S2 +is_a: UBERON:0008928 ! sublaminar layers S2 or S3 +is_a: UBERON:0009732 ! sublaminar layers S1 or S2 or S5 +is_a: UBERON:0009733 ! sublaminar layers S1 or S2 or S3 +is_a: UBERON:0009734 ! sublaminar layers S2 or S3 or S4 +is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4 +intersection_of: UBERON:0008921 ! substratum of layer of retina +intersection_of: adjacent_to UBERON:0008922 ! sublaminar layer S1 +intersection_of: adjacent_to UBERON:0008924 ! sublaminar layer S3 +relationship: adjacent_to UBERON:0008922 ! sublaminar layer S1 +relationship: adjacent_to UBERON:0008924 ! sublaminar layer S3 + +[Term] +id: UBERON:0008924 +name: sublaminar layer S3 +def: "A retinal neural layer that is immediately adjacent to the S2 and S4 layers and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] +xref: CP:0000115 +is_a: UBERON:0008928 ! sublaminar layers S2 or S3 +is_a: UBERON:0009731 ! sublaminar layers S3 or S4 +is_a: UBERON:0009733 ! sublaminar layers S1 or S2 or S3 +is_a: UBERON:0009734 ! sublaminar layers S2 or S3 or S4 +is_a: UBERON:0009735 ! sublaminar layers S1 or S3 or S4 +is_a: UBERON:0009736 ! sublaminar layers S3 or S4 or S5 +is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4 +intersection_of: UBERON:0008921 ! substratum of layer of retina +intersection_of: adjacent_to UBERON:0008923 ! sublaminar layer S2 +intersection_of: adjacent_to UBERON:0008925 ! sublaminar layer S4 +relationship: adjacent_to UBERON:0008923 ! sublaminar layer S2 +relationship: adjacent_to UBERON:0008925 ! sublaminar layer S4 + +[Term] +id: UBERON:0008925 +name: sublaminar layer S4 +def: "A retinal neural layer that is immediately adjacent to the S3 and S5 layer and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] +xref: CP:0000116 +is_a: UBERON:0008929 ! sublaminar layers S4 or S5 +is_a: UBERON:0009731 ! sublaminar layers S3 or S4 +is_a: UBERON:0009734 ! sublaminar layers S2 or S3 or S4 +is_a: UBERON:0009735 ! sublaminar layers S1 or S3 or S4 +is_a: UBERON:0009736 ! sublaminar layers S3 or S4 or S5 +is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4 +intersection_of: UBERON:0008921 ! substratum of layer of retina +intersection_of: adjacent_to UBERON:0008924 ! sublaminar layer S3 +intersection_of: adjacent_to UBERON:0008926 ! sublaminar layer S5 +relationship: adjacent_to UBERON:0008924 ! sublaminar layer S3 +relationship: adjacent_to UBERON:0008926 ! sublaminar layer S5 + +[Term] +id: UBERON:0008926 +name: sublaminar layer S5 +def: "A retinal neural layer that is immediately adjacent to the retinal ganglion cell layer and comprises 20 percent of the ganglion plexiform layer of retina." [GOC:tfm] +xref: CP:0000117 +is_a: UBERON:0008929 ! sublaminar layers S4 or S5 +is_a: UBERON:0009732 ! sublaminar layers S1 or S2 or S5 +is_a: UBERON:0009736 ! sublaminar layers S3 or S4 or S5 +intersection_of: UBERON:0008921 ! substratum of layer of retina +intersection_of: adjacent_to UBERON:0001792 ! ganglionic layer of retina +intersection_of: adjacent_to UBERON:0008925 ! sublaminar layer S4 +relationship: adjacent_to UBERON:0001792 ! ganglionic layer of retina +relationship: adjacent_to UBERON:0008925 ! sublaminar layer S4 + +[Term] +id: UBERON:0008927 +name: sublaminar layers S1 or S2 +def: "One of sublaminar layers S1 or S2." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] +xref: CP:0000118 +is_a: UBERON:0008921 ! substratum of layer of retina +union_of: UBERON:0008922 ! sublaminar layer S1 +union_of: UBERON:0008923 ! sublaminar layer S2 +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan +relationship: part_of UBERON:0001795 ! inner plexiform layer of retina + +[Term] +id: UBERON:0008928 +name: sublaminar layers S2 or S3 +def: "One of sublaminar layers S2 or S3." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] +xref: CP:0000119 +is_a: UBERON:0008921 ! substratum of layer of retina +union_of: UBERON:0008923 ! sublaminar layer S2 +union_of: UBERON:0008924 ! sublaminar layer S3 +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan +relationship: part_of UBERON:0001795 ! inner plexiform layer of retina + +[Term] +id: UBERON:0008929 +name: sublaminar layers S4 or S5 +def: "One of sublaminar layers S4 or S5." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] +xref: CP:0000120 +is_a: UBERON:0008921 ! substratum of layer of retina +union_of: UBERON:0008925 ! sublaminar layer S4 +union_of: UBERON:0008926 ! sublaminar layer S5 +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan +relationship: part_of UBERON:0001795 ! inner plexiform layer of retina + +[Term] +id: UBERON:0008930 +name: somatosensory cortex +def: "Area of the parietal lobe concerned with receiving general sensations. It lies posterior to the central sulcus." [MESH:A08.186.211.730.885.213.670.675] +subset: efo_slim +subset: pheno_slim +synonym: "primary somatic sensory cortex" RELATED [FMA:242642] +synonym: "somatic sensory cortex" EXACT [FMA:242642] +synonym: "somatic sensory cortex" RELATED [BTO:0004353] +synonym: "somatosensory area" RELATED [BTO:0004353] +synonym: "somatosensory areas" RELATED [BAMS:SS] +synonym: "somesthetic area" RELATED [BTO:0004353] +xref: BAMS:SS +xref: BTO:0004353 +xref: EFO:0001391 +xref: FMA:242642 +xref: GAID:681 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3241 +xref: http://www.snomedbrowser.com/Codes/Details/279252006 +xref: MBA:453 +xref: MESH:A08.186.211.730.885.213.670.675 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0035014 {source="NIFSTD"} ! functional part of brain +relationship: part_of UBERON:0002581 {source="BTO"} ! postcentral gyrus + +[Term] +id: UBERON:0008933 +name: primary somatosensory cortex +def: "(Chapin & Lin, 1984, rat): the region considered as the SI cortex is not a cytoarchitecturally homogeneous structure but consists instead of a patchwork array of areas containing dense aggregations of layer IV granule cells, surrounded by granule-cell-sparse regions. As was shown by Welker (b71,b76), and in our own mapping studies (see Fig. 3), this discontinuous pattern of granular, or koniocortical, zones contains within itself a map of the ratbs cutaneous periphery. There are clear subtypes within this cytoarchitectural subregion, notably including the bgranular aggregateb type of cytoarchitecture characteristic of the paw, limb, and mystacial vibrissae areas, and the bbarrel-fieldb type (originally described by Woolsey and Van der Loos, b70) seen in the nose and perioral regions. In the mouse, but not the rat, such barrels also cover the whole whisker representation (Welker and Woolsey, b74)." [NLX:143551] +subset: pheno_slim +synonym: "postcentral gyrus" RELATED [http://en.wikipedia.org/wiki/Sensory_system] +synonym: "primary somatosensory area" RELATED [BAMS:SSp] +synonym: "primary somatosensory cortex (area S1, areas 3,1,2)" EXACT [DHBA:10209] +synonym: "S1" BROAD ABBREVIATION [] +synonym: "S1C" RELATED ABBREVIATION [DHBA:10209] +synonym: "somatosensory area 1" EXACT [http://en.wikipedia.org/wiki/Sensory_system] +xref: BAMS:S1 +xref: BAMS:SSp +xref: DHBA:10209 +xref: EMAPA:35706 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1350 +xref: MA:0000908 +xref: MBA:322 +xref: NLX:143551 +is_a: UBERON:0008930 ! somatosensory cortex +relationship: part_of UBERON:0016530 {source="DHBA", source="MA", source="NIFSTD"} ! parietal cortex + +[Term] +id: UBERON:0008934 +name: secondary somatosensory cortex +def: "the area of the upper bank of the lateral sulcus that is involved in somatic sensation" [ISBN:0838580343, MP:0000863] +subset: pheno_slim +synonym: "S2" BROAD ABBREVIATION [] +synonym: "somatosensory area 2" EXACT [http://en.wikipedia.org/wiki/Sensory_system] +synonym: "supplemental somatosensory area" RELATED [BAMS:SSs] +xref: BAMS:S2 +xref: BAMS:SSs +xref: EMAPA:35756 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1909 +xref: MA:0000918 +xref: MBA:378 +is_a: UBERON:0008930 ! somatosensory cortex +relationship: part_of UBERON:0010262 {source="WP"} ! operculum of brain + +[Term] +id: UBERON:0008935 +name: gastropod albumen gland +def: "The posterior oviduct opens into the large white albumen gland which adds a layer of albumen to the zygote before it reaches the egg capsule gland." [BTO:0000054] +xref: BTO:0000054 +is_a: UBERON:0005398 {source="BTO"} ! female reproductive gland + +[Term] +id: UBERON:0008936 +name: gastropod genital pore +def: "A small opening on the side of the head in some gastropods through which the penis is protruded." [BTO:0004684] +synonym: "genital orifice" RELATED [BTO:0004684] +synonym: "genital pore" EXACT [BTO:0004684] +xref: BTO:0004684 +is_a: UBERON:0000161 ! orifice +is_a: UBERON:0005156 ! reproductive structure + +[Term] +id: UBERON:0008937 +name: visceral hump +def: "Mollusks have three distinct divisions of their body. The head contains the sensory equipment (eyes, antennae, etc) and the primitive brain. The visceral hump, which is the main body, contains most of the organs, including a complete digestive and excretory tract as well as the reproductive organs. The visceral hump also includes the two external flaps of tissue, which are known as the mantle." [BTO:0001448, http://www.britannica.com/EBchecked/topic/630349/visceral-hump] +synonym: "visceral sac" RELATED [BTO:0001448] +xref: BTO:0001448 +is_a: UBERON:0000475 ! organism subdivision + +[Term] +id: UBERON:0008939 +name: pedal ganglion +def: "The pedal ganglia mainly are necessary for coordination of locomotion of a snail." [BTO:0001012] +xref: BTO:0001012 +is_a: UBERON:0000045 {source="BTO"} ! ganglion +relationship: part_of UBERON:0008937 {source="BTO"} ! visceral hump + +[Term] +id: UBERON:0008940 +name: parietal ganglion +def: "A lateral ganglion that innervates pallial cavity, gills and skin of a snail[BTO,modified]." [BTO:0001841] +xref: BTO:0001841 +is_a: UBERON:0000045 {source="BTO"} ! ganglion +relationship: part_of UBERON:0008937 {source="BTO"} ! visceral hump + +[Term] +id: UBERON:0008941 +name: pleural ganglion +def: "A knot of nerves in The pallial cavity that innervates the mantle of a snail[BTO,modified]." [BTO:0001842] +xref: BTO:0001842 +is_a: UBERON:0000045 {source="BTO"} ! ganglion +relationship: part_of UBERON:0008937 {source="BTO"} ! visceral hump + +[Term] +id: UBERON:0008942 +name: gastropod cerebral ganglion +def: "The cerebral ganglia are primarily sensual centres, that compute information from the eyes as well as from the tactile and position sensors (statocystes). Besides coordination they also serve the locational memory of a snail." [BTO:0001843] +synonym: "cerebral ganglion" EXACT [BTO:0001843] +xref: BTO:0001843 +is_a: UBERON:0000045 {source="BTO"} ! ganglion + +[Term] +id: UBERON:0008943 +name: headfoot +def: "The head-foot is the part you see most easily in slugs and snails. It is mostly a muscular organ covered in cilia and rich in mucous cells, which the mollusc uses to move around, it normally tapers to a tail at one end and has a head incorporated in the front. The head includes a mouth, eyes and tentacles, the last two may be much reduced or even absent. In those species with shells the head-foot can be drawn into the shell." [BTO:0003509] +xref: BTO:0003509 +is_a: UBERON:0000475 ! organism subdivision + +[Term] +id: UBERON:0008944 +name: albumen +def: "Albumen is the clear liquid contained within an egg and consists of water and proteins, among which are ovomucin and ovomucoid. It protects the egg yolk and provides additional nutrition for the growth of the embryo." [GO:0097099, http://en.wikipedia.org/wiki/Albumen, https://sourceforge.net/tracker/index.php?func=detail&aid=3357613&group_id=36855&atid=440764] +synonym: "egg white" EXACT [GO:0097099] +xref: BTO:0000370 +xref: GO:0097099 +xref: http://en.wikipedia.org/wiki/Albumen +xref: ncithesaurus:Egg_White +is_a: UBERON:0000463 ! organism substance +relationship: part_of UBERON:0007379 ! shelled egg +relationship: protects UBERON:0007378 ! egg yolk + +[Term] +id: UBERON:0008945 +name: extraembryonic endoderm +def: "An extraembryonic epithelium that is formed by the delaminated cells of the primitive endoderm (hypoblast) that goes on to form the yolk sac. In mammals, as in avians, these cells do not produce any part of the newborn organism (i.e. they are extraembryonic)" [http://www.ana.ed.ac.uk/database/humat/notes/extraemb/mesoder.htm, https://orcid.org/0000-0002-6601-2165, ISBN:9780878932504] +xref: EHDAA2:0000473 +xref: EHDAA:105 +xref: EMAPA:16052 +is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0005292 ! extraembryonic tissue + +[Term] +id: UBERON:0008946 +name: lung parenchyma +def: "A parenchyma that is part of a lung." [OBOL:automatic] +synonym: "parenchyma of lung" RELATED [BTO:0000763] +synonym: "pulmonary parenchyma" RELATED [EMAPA:35522] +synonym: "respiratory portion of lung" EXACT [FMA:27360] +xref: EMAPA:35522 +xref: FMA:27360 +xref: http://www.snomedbrowser.com/Codes/Details/201712001 +xref: MA:0003168 +is_a: UBERON:0000353 {source="FMA"} ! parenchyma +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000353 ! parenchyma +intersection_of: part_of UBERON:0002048 ! lung +relationship: part_of UBERON:0002048 {source="FMA"} ! lung + +[Term] +id: UBERON:0008947 +name: respiratory primordium +xref: EHDAA2:0004069 +xref: http://linkedlifedata.com/resource/umls/id/C1514898 +xref: NCIT:C34283 +xref: UMLS:C1514898 {source="ncithesaurus:Respiratory_Primordium"} +is_a: UBERON:0001048 {source="Obol"} ! primordium +relationship: has_potential_to_develop_into UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0003258 ! endoderm of foregut + +[Term] +id: UBERON:0008948 +name: upper lobe of lung +def: "A lobe of the lung that is closest to the head." [https://orcid.org/0000-0002-6601-2165] +synonym: "cranial lobe of lung" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "lobus superior" EXACT [FMA:7334] +synonym: "lobus superior pulmonis" EXACT LATIN [FMA:TA] +synonym: "superior lobe of lung" EXACT [FMA:7334] +xref: FMA:7334 +xref: galen:UpperLobeOfLung +xref: http://linkedlifedata.com/resource/umls/id/C0225756 +xref: http://www.snomedbrowser.com/Codes/Details/303548008 +xref: NCIT:C12285 +xref: UMLS:C0225756 {source="ncithesaurus:Lung_Upper_Lobe"} +is_a: UBERON:0000101 ! lobe of lung +intersection_of: UBERON:0000101 ! lobe of lung +intersection_of: anterior_to UBERON:0008949 ! lower lobe of lung +intersection_of: in_anterior_side_of UBERON:0002048 ! lung +disjoint_from: UBERON:0008955 ! middle lobe of lung +relationship: anterior_to UBERON:0008949 ! lower lobe of lung +relationship: in_anterior_side_of UBERON:0002048 ! lung + +[Term] +id: UBERON:0008949 +name: lower lobe of lung +def: "The bottom most subdivision of either the right or left lung." [ncithesaurus:Lung_Lower_Lobe] +synonym: "inferior lobe of lung" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "lobus inferior" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "lobus inferior pulmonis" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: FMA:7335 +xref: galen:LowerLobeOfLung +xref: http://linkedlifedata.com/resource/umls/id/C0225758 +xref: http://www.snomedbrowser.com/Codes/Details/303549000 +xref: NCIT:C12287 +xref: UMLS:C0225758 {source="ncithesaurus:Lung_Lower_Lobe"} +is_a: UBERON:0000101 ! lobe of lung +disjoint_from: UBERON:0008955 ! middle lobe of lung +relationship: in_posterior_side_of UBERON:0002048 ! lung + +[Term] +id: UBERON:0008950 +name: azygous lobe of lung +def: "The azygous lobe of the lung is an accessory lobe of the right lung. It is rare and usually associated with an abnormality of the azygous vein. It is produced by an aberrant position of the azygous vein near the hilum of the lung. It divides the right superior lobe near the apex of the lung down to the hilum in roughly the median plane. The fissure created, the meso-azygous fissure, is lined by both visceral and parietal pleura. The lobe lies superomedial to the fissure." [http://www.e-radiography.net/radpath/a/azygoslobe.htm, http://www.gpnotebook.co.uk] +is_a: UBERON:0004890 ! right lung accessory lobe + +[Term] +id: UBERON:0008951 +name: left lung lobe +def: "A lobe of lung that is part of a left lung." [OBOL:automatic] +synonym: "lobe of left lung" EXACT [] +synonym: "lobe of the left lung" EXACT [] +xref: EHDAA:2981 +xref: http://linkedlifedata.com/resource/umls/id/C1285107 +xref: http://www.snomedbrowser.com/Codes/Details/272655003 +xref: NCIT:C48945 +xref: UMLS:C1285107 {source="ncithesaurus:Lobe_of_the_Left_Lung"} +is_a: UBERON:0000101 ! lobe of lung +intersection_of: UBERON:0000101 ! lobe of lung +intersection_of: part_of UBERON:0002168 ! left lung +relationship: part_of UBERON:0002168 ! left lung + +[Term] +id: UBERON:0008952 +name: upper lobe of left lung +def: "The lobe of the left lung that is closest to the head." [https://orcid.org/0000-0002-6601-2165] +synonym: "left lung cranial lobe" EXACT [EHDAA2:0000953] +synonym: "left upper lobe" EXACT [FMA:7370] +synonym: "left upper lobe of lung" EXACT [FMA:7370] +synonym: "lobus superior (pulmo sinister)" EXACT LATIN [FMA:7370, FMA:TA] +synonym: "lobus superior pulmonis sinistri" EXACT LATIN [FMA:TA] +synonym: "superior lobe of left lung" EXACT [FMA:7370] +xref: EHDAA2:0000953 +xref: EHDAA:4957 +xref: FMA:7370 +xref: galen:UpperLobeOfLeftLung +xref: http://linkedlifedata.com/resource/umls/id/C1261076 +xref: http://www.snomedbrowser.com/Codes/Details/361984006 +xref: NCIT:C33021 +xref: UMLS:C1261076 {source="ncithesaurus:Upper_Lobe_of_the_Left_Lung"} +is_a: UBERON:0008948 {source="FMA"} ! upper lobe of lung +is_a: UBERON:0008951 ! left lung lobe +intersection_of: UBERON:0008948 ! upper lobe of lung +intersection_of: part_of UBERON:0002168 ! left lung + +[Term] +id: UBERON:0008953 +name: lower lobe of left lung +def: "A lower lobe of lung that is part of a left lung." [OBOL:automatic] +synonym: "inferior lobe of left lung" EXACT [FMA:7371] +synonym: "left lower lobe" EXACT [FMA:7371] +synonym: "left lower lobe of lung" EXACT [FMA:7371] +synonym: "left lung caudal lobe" EXACT [EHDAA2:0000945] +synonym: "lobus inferior (pulmo sinister)" EXACT [FMA:7371] +synonym: "lobus inferior pulmonis sinistri" EXACT LATIN [FMA:TA] +xref: EHDAA2:0000945 +xref: EHDAA:4949 +xref: FMA:7371 +xref: galen:LowerLobeOfLeftLung +xref: http://linkedlifedata.com/resource/umls/id/C1261077 +xref: http://www.snomedbrowser.com/Codes/Details/361989001 +xref: NCIT:C33020 +xref: UMLS:C1261077 {source="ncithesaurus:Lower_Lobe_of_the_Left_Lung"} +is_a: UBERON:0008949 {source="FMA"} ! lower lobe of lung +is_a: UBERON:0008951 ! left lung lobe +intersection_of: UBERON:0008949 ! lower lobe of lung +intersection_of: part_of UBERON:0002168 ! left lung + +[Term] +id: UBERON:0008954 +name: lingula of left lung +def: "Anterioinferior portion of left upper lung lobe" [http://en.wikipedia.org/wiki/Lingula_of_left_lung, ISBN:0123813611] +synonym: "left pulmonary lingula" EXACT [FMA:7433] +synonym: "lingula of lung" EXACT [FMA:7433] +synonym: "lingula of the lung" EXACT [] +synonym: "middle lobe of left lung" RELATED [galen:MiddleLobeOfLeftLung] +xref: FMA:7433 +xref: galen:MiddleLobeOfLeftLung +xref: http://en.wikipedia.org/wiki/Lingula_of_left_lung +xref: http://linkedlifedata.com/resource/umls/id/C0225740 +xref: http://www.snomedbrowser.com/Codes/Details/184916009 +xref: NCIT:C40373 +xref: UMLS:C0225740 {source="ncithesaurus:Lingula"} +is_a: UBERON:0000063 {source="FMA"} ! organ subunit +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: part_of UBERON:0008952 {source="ISBN:0123813611"} ! upper lobe of left lung + +[Term] +id: UBERON:0008955 +name: middle lobe of lung +def: "A lobe of the lung that is situated somewhere between an upper lobe and lower lobe." [https://orcid.org/0000-0002-6601-2165] +synonym: "lung middle lobe" EXACT [] +xref: galen:MiddleLobeOfLung +xref: http://www.snomedbrowser.com/Codes/Details/362900002 +is_a: UBERON:0000101 ! lobe of lung +relationship: anterior_to UBERON:0008949 ! lower lobe of lung +relationship: posterior_to UBERON:0008948 ! upper lobe of lung + +[Term] +id: UBERON:0008956 +name: involucrum +def: "A layer of new bone growth outside existing bone seen in pyogenic osteomyelitis. It results from the stripping off of the periosteum by the accumulation of pus within the bone, and new bone growing from the periosteum." [http://en.wikipedia.org/wiki/Involucrum] +xref: http://en.wikipedia.org/wiki/Involucrum +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0001474 {source="Wikipedia"} ! bone element + +[Term] +id: UBERON:0008957 +name: sequestrum +def: "A piece of dead bone that has become separated during the process of necrosis from normal/sound bone.." [http://en.wikipedia.org/wiki/Sequestrum] +xref: http://en.wikipedia.org/wiki/Sequestrum +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0001474 {source="Wikipedia"} ! bone element + +[Term] +id: UBERON:0008958 +name: cetacean involucrum +synonym: "whale involucrum" RELATED [] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0001474 {source="http://en.wikipedia.org/wiki/Evolution_of_cetaceans"} ! bone element + +[Term] +id: UBERON:0008959 +name: auditory bulla +def: "A hollow bony structure on the ventral, posterior portion of the skull of placental mammals that encloses parts of the middle and inner ear. In most species, it is formed by the tympanic part of the temporal bone." [http://en.wikipedia.org/wiki/Auditory_bulla] +synonym: "auditory bullae" RELATED PLURAL [] +synonym: "bulla" BROAD [] +synonym: "bulla tympanica" RELATED LATIN [https://orcid.org/0000-0002-6601-2165] +synonym: "sigmoid process" NARROW [] +synonym: "tympanic bulla" RELATED [] +xref: Auditory:bulla +xref: EMAPA:37433 {source="MA:th"} +xref: NCIT:C112425 +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0001690 ! ear +relationship: part_of UBERON:0003113 {source="ISBN:0073040584"} ! dermatocranium +relationship: surrounds UBERON:0004114 {source="Rose"} ! tympanic cavity + +[Term] +id: UBERON:0008960 +name: melon organ +def: "The melon is an ovoid-shaped, fatty organ found in the forehead of all toothed whales (odontocetes), including dolphins and porpoises (Cranford et al., 1996; Harper, C. J., et al., 2008) and believed to be used in echolocation" [http://en.wikipedia.org/wiki/Melon_(whale)] +synonym: "melon" RELATED [] +xref: Melon:(whale) +is_a: UBERON:0010053 ! echolocation organ +relationship: has_part UBERON:0013182 ! core of melon organ +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0008961 +name: parabronchus +def: "tertiary bronchus in the avian lung." [http://medical-dictionary.thefreedictionary.com/parabronchi] +synonym: "neopulmonic parabronchus" NARROW [] +synonym: "paleopulmonic parabronchus" NARROW [] +synonym: "parabronchi" RELATED PLURAL [] +is_a: UBERON:0002184 {notes="tertiary", source="ISBN:0073040584"} ! segmental bronchus +relationship: connected_to UBERON:0009072 ! ventrobronchus +relationship: connected_to UBERON:0009073 ! dorsobronchus + +[Term] +id: UBERON:0008962 +name: forelimb bone +def: "A bone that is part of a forelimb region. Examples: humerus, any of the phalanges. Counter-example: scapula (a bone of the pectoral girdle). Note that we consider the forelimb to end at the shoulder." [https://orcid.org/0000-0002-6601-2165] +synonym: "free forelimb bone" EXACT [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +synonym: "wing bone" NARROW SENSU [Geisha:syn, NCBITaxon:8782] +synonym: "wing bone" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +xref: GAID:178 +xref: http://linkedlifedata.com/resource/umls/id/C0003793 +xref: http://www.snomedbrowser.com/Codes/Details/368532003 +xref: MESH:D001133 +xref: NCIT:C12983 +xref: UMLS:C0003793 {source="ncithesaurus:Bone_of_the_Upper_Extremity"} +is_a: UBERON:0002428 ! limb bone +is_a: UBERON:0010741 ! bone of pectoral complex +is_a: UBERON:0015021 ! forelimb endochondral element +intersection_of: UBERON:0015021 ! forelimb endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010883 ! forelimb cartilage element + +[Term] +id: UBERON:0008963 +name: hoof +def: "The tip of a toe of an ungulate mammal, strengthened by a thick horny (keratin) covering. The hoof consists of a hard or rubbery sole, and a hard wall formed by a thick nail rolled around the tip of the toe. The weight of the animal is normally borne by both the sole and the edge of the hoof wall. Hooves grow continuously, and are constantly worn down by use." [http://en.wikipedia.org/wiki/Hoof, https://github.com/obophenotype/uberon/issues/296] +comment: The hoof is the integument of the foot. Like skin, the integument of the foot has three layers, namely the epidermis, dermis, and SC tissue. +xref: BTO:0003994 +xref: http://en.wikipedia.org/wiki/Hoof +xref: http://www.snomedbrowser.com/Codes/Details/410026002 +is_a: UBERON:0009564 ! distal limb integumentary appendage + +[Term] +id: UBERON:0008964 +name: abdominal ganglion of visceral hump +def: "An unpaired knot of nerves in The visceral sacs that innervates the pallial organs as well as the inner organs." [BTO:0000022] +synonym: "abdominal ganglion" RELATED [BTO:0000022] +synonym: "visceral ganglion" RELATED [BTO:0000022] +xref: BTO:0000022 +is_a: UBERON:0000045 {source="BTO"} ! ganglion +disjoint_from: UBERON:0009758 ! abdominal ganglion +relationship: part_of UBERON:0008937 {source="BTO"} ! visceral hump + +[Term] +id: UBERON:0008967 +name: centrum semiovale +def: "The semioval center is the white matter found underneath the grey matter on the surface of the cerebrum. The term is synonymous with cerebral white matter. The white matter, located in each hemisphere between the cerebral cortex and nuclei, as a whole has a semioval shape. It consists of cortical projection fibers, association fibers and cortical fibers." [http://en.wikipedia.org/wiki/Semioval_center] +synonym: "centrum ovale" EXACT LATIN [FMA:61939, FMA:TA] +synonym: "centrum semiovale" RELATED LATIN [http://en.wikipedia.org/wiki/Semioval_center] +synonym: "cerebral white matter" RELATED [] +synonym: "corpus medullare cerebri" EXACT LATIN [FMA:61939, FMA:TA] +synonym: "medullary center" EXACT [FMA:61939] +synonym: "semioval center" RELATED [BTO:0000229] +synonym: "substantia centralis medullaris cerebri" EXACT LATIN [FMA:61939, FMA:TA] +synonym: "white matter of cerebrum" RELATED [FMA:61939] +xref: BAMS:cw +xref: BAMS:sovc +xref: BTO:0000229 +xref: FMA:61939 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=190 +xref: http://www.snomedbrowser.com/Codes/Details/369198002 +xref: Semioval:center +is_a: UBERON:0002437 ! cerebral hemisphere white matter + +[Term] +id: UBERON:0008969 +name: dental follicle +def: "A sac containing the developing tooth and its odontogenic organ. The dental follicle (DF) differentiates into the periodontal ligament. In addition, it may be the precursor of other cells of the periodontium, including osteoblasts, cementoblasts and fibroblasts. They develop into the alveolar bone, the cementum with Sharpey's fibers and the periodontal ligament fibers respectively." [http://en.wikipedia.org/wiki/Dental_follicle] +synonym: "dental sac" RELATED [http://en.wikipedia.org/wiki/Dental_follicle, MA:0003121] +synonym: "tooth follicle" RELATED [BTO:0000337] +xref: BTO:0000337 +xref: Dental:follicle +xref: EMAPA:35275 +xref: http://www.snomedbrowser.com/Codes/Details/110975002 +xref: MA:0003121 +xref: NCIT:C34138 +is_a: UBERON:0007499 ! epithelial sac +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010371 ! ecto-epithelium +relationship: part_of UBERON:0008281 ! tooth bud + +[Term] +id: UBERON:0008971 +name: left colon +def: "The distal portion of the colon; it develops embryonically from the hindgut and functions in the storage and elimination of waste." [BTO:0000646] +synonym: "distal colon" RELATED [BTO:0000646] +xref: BTO:0000646 +xref: CALOHA:TS-0202 +xref: galen:LeftColon +xref: http://linkedlifedata.com/resource/umls/id/C0227388 +xref: http://www.snomedbrowser.com/Codes/Details/362164005 +xref: NCIT:C33929 +xref: UMLS:C0227388 {source="ncithesaurus:Left_Colon"} +is_a: UBERON:0000064 ! organ part +relationship: develops_from UBERON:0001046 {source="BTO"} ! hindgut +relationship: part_of UBERON:0001155 {source="BTO"} ! colon + +[Term] +id: UBERON:0008972 +name: right colon +def: "The proximal portion of the colon, extending from the ileocecal valve usually to a point proximal to the left colic flexure; it develops embryonically from the terminal portion of the midgut and functions in absorption." [BTO:0000649] +synonym: "proximal colon" RELATED [BTO:0000649] +xref: BTO:0000649 +xref: galen:RightColon +xref: http://linkedlifedata.com/resource/umls/id/C1305188 +xref: http://www.snomedbrowser.com/Codes/Details/362161002 +xref: NCIT:C12383 +xref: UMLS:C1305188 {source="ncithesaurus:Right_Colon"} +is_a: UBERON:0000064 ! organ part +relationship: develops_from UBERON:0001045 {source="BTO"} ! midgut +relationship: part_of UBERON:0001155 {source="BTO"} ! colon + +[Term] +id: UBERON:0008974 +name: apocrine gland +def: "any exocrine gland whose cells bud their secretions off through the plasma membrane producing membrane-bound vesicles in the lumen; the apical portion of the secretory cell of the gland pinches off and enters the lumen; it loses part of its cytoplasm in their secretions; apocrine secretion is functional during hormonal stress or puberty; an example of true apocrine glands are mammary glands, responsible for secreting breast milk." [MGI:anna] +subset: organ_slim +subset: pheno_slim +synonym: "true apocrine gland" EXACT [] +xref: BTO:0001162 +xref: EMAPA:35141 +xref: http://en.wikipedia.org/wiki/Apocrine +xref: http://www.snomedbrowser.com/Codes/Details/361698000 +xref: MA:0003040 +is_a: UBERON:0002365 ! exocrine gland +disjoint_from: UBERON:0010243 {source="cjm"} ! merocrine gland + +[Term] +id: UBERON:0008975 +name: oviduct shell gland +def: "A gland in the posterior expansion of the oviduct that secretes the calcareous surroundings of the egg shell." [ISBN:978-0226870137] +subset: grouping_class +synonym: "nidamental gland" RELATED [] +synonym: "shell gland" EXACT [BTO:0001241] +xref: BTO:0001241 +xref: http://www.snomedbrowser.com/Codes/Details/14478002 +is_a: UBERON:0005398 ! female reproductive gland +relationship: part_of UBERON:0000993 ! oviduct + +[Term] +id: UBERON:0008976 +name: snake venom gland +def: "The venom gland of snakes is in actual fact a modified salivary gland and is linked to the groove in the fangs by a duct." [BTO:0001440] +comment: snake venom glands are modified salivary glands. In future this class may be merged into a more general modified salivary gland venom gland class +synonym: "poison gland" RELATED [BTO:0001440] +synonym: "venenosalivary gland" RELATED [] +synonym: "venom gland" BROAD [BTO:0001440] +xref: BTO:0001440 +xref: http://www.snomedbrowser.com/Codes/Details/23993002 +is_a: UBERON:0011579 ! venom gland +relationship: produces UBERON:0013076 ! snake venom + +[Term] +id: UBERON:0008977 +name: pes anserinus of tibia +def: "The pes anserinus is the insertion of the conjoined tendons of three muscles onto the anteromedial (front and inside) surface of the proximal extremity of the tibia." [http://en.wikipedia.org/wiki/Pes_anserinus_(leg)] +synonym: "pes anserine" RELATED [http://en.wikipedia.org/wiki/Pes_anserinus_(leg)] +synonym: "pes anserinus" EXACT [BTO:0001507] +synonym: "pes anserinus of leg" RELATED [http://en.wikipedia.org/wiki/Pes_anserinus_(leg)] +xref: BTO:0001507 +xref: FMA:311256 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2298 +xref: http://en.wikipedia.org/wiki/Pes_anserinus_(leg) +xref: http://www.snomedbrowser.com/Codes/Details/360767004 +is_a: UBERON:0001630 ! muscle organ +relationship: has_muscle_insertion UBERON:0000979 ! tibia +relationship: part_of UBERON:0000043 {source="BTO"} ! tendon + +[Term] +id: UBERON:0008978 +name: anal sac +def: "In carnivores, either of two sacs found between the internal and external anal sphincters, lined with sebaceous glands and in some species with apocrine glands." [BTO:0001681] +xref: BTO:0001681 +xref: EMAPA:37395 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/362169000 +xref: MA:0003058 +xref: MESH:D000695 +is_a: UBERON:0000064 {source="BTO"} ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001245 {source="BTO"} ! anus + +[Term] +id: UBERON:0008979 +name: carcass +def: "A body of a multi-cellular organism that is no longer living." [UBERON:cjm] +synonym: "cadaver" RELATED [BTO:0001965] +synonym: "dead body" RELATED [BTO:0001965] +xref: BTO:0001965 +xref: http://www.snomedbrowser.com/Codes/Details/127853004 +xref: NCIT:C113674 +is_a: UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0008981 +name: obsolete rhinencephalon +def: "The olfactory region of the brain, located in the cerebrum." [BTO:0002785] +comment: Obsoleted because The term rhinencephalon has been used to describe different structures at different points in time.[ISBN 0-8493-8631-4]. May refer to: a specific structure in aves; a part of the brain involved with olfaction; +synonym: "olfactory brain" RELATED [BTO:0002785] +is_obsolete: true +consider: BTO:0002785 +consider: SCTID:361576004 + +[Term] +id: UBERON:0008982 +name: fascia +def: "A dense regular connective tissue that that connects muscles together[WP, modified]." [http://en.wikipedia.org/wiki/Fascia] +subset: pheno_slim +synonym: "fascia cluster" EXACT [FMA:30318] +xref: BTO:0002930 +xref: EV:0100150 +xref: FMA:30318 +xref: http://en.wikipedia.org/wiki/Fascia +xref: http://linkedlifedata.com/resource/umls/id/C0015641 +xref: http://www.snomedbrowser.com/Codes/Details/181772008 +xref: MESH:D005205 +xref: NCIT:C13108 +xref: UMLS:C0015641 {source="ncithesaurus:Fascia"} +is_a: UBERON:0007846 {source="Wikipedia"} ! dense regular connective tissue +relationship: connects UBERON:0001630 {notes="fasciae connect muscles to other muscles"} ! muscle organ +relationship: connects UBERON:0001630 {minCardinality="2", maxCardinality="2"} ! muscle organ +relationship: part_of UBERON:0002204 ! musculoskeletal system + +[Term] +id: UBERON:0008987 +name: renal parenchyma +def: "The functional tissue of the kidney, consisting of the nephrons." [BTO:0003604] +synonym: "kidney parenchyma" RELATED [BTO:0003604] +synonym: "parenchyma of kidney" EXACT [FMA:15574] +xref: BTO:0003604 +xref: FMA:15574 +xref: http://www.snomedbrowser.com/Codes/Details/29704000 +is_a: UBERON:0000353 {source="FMA"} ! parenchyma +intersection_of: UBERON:0000353 ! parenchyma +intersection_of: part_of UBERON:0002113 ! kidney +relationship: part_of UBERON:0002113 {source="FMA"} ! kidney + +[Term] +id: UBERON:0008989 +name: submocosal esophageal gland +def: "One of the racemose glands in the walls of the esophagus that in humans are small and serve principally to lubricate the food but in some birds secrete a milky fluid on which the young are fed." [BTO:0003634, http://en.wikipedia.org/wiki/Esophageal_glands] +synonym: "esophageal gland" EXACT [FMA:9404] +synonym: "glandulae oesophageae" EXACT [http://en.wikipedia.org/wiki/Esophageal_glands] +synonym: "mucous gland of submucosa of esophagus" EXACT [FMA:9404] +xref: BTO:0003634 +xref: Esophageal:glands +xref: FMA:9404 +xref: http://linkedlifedata.com/resource/umls/id/C0227178 +xref: http://www.snomedbrowser.com/Codes/Details/322749003 +xref: NCIT:C32536 +xref: UMLS:C0227178 {source="ncithesaurus:Esophageal_Gland"} +is_a: UBERON:0003408 ! gland of digestive tract +is_a: UBERON:0005178 ! thoracic cavity element +is_a: UBERON:0011148 ! submucosal gland +intersection_of: UBERON:0011148 ! submucosal gland +intersection_of: part_of UBERON:0001043 ! esophagus +relationship: located_in UBERON:0001972 ! submucosa of esophagus +relationship: part_of UBERON:0001043 ! esophagus + +[Term] +id: UBERON:0008992 +name: chorion frondosum +def: "The part of the chorion where the villi persist, forming the foetal part of the placenta." [BTO:0003677] +synonym: "shaggy chorion" RELATED [BTO:0003677] +xref: BTO:0003677 +xref: http://www.snomedbrowser.com/Codes/Details/37333001 +is_a: UBERON:0000478 {source="BTO"} ! extraembryonic structure +relationship: part_of UBERON:0003124 {source="BTO"} ! chorion membrane + +[Term] +id: UBERON:0008993 +name: habenular nucleus +def: "Either of the two neural nuclei within the habenula." [http://orcid.org/0000-0002-6601-2165] +synonym: "ganglion habenulae" RELATED [BTO:0003685] +synonym: "habenular nuclei" RELATED PLURAL [DHBA:HN] +synonym: "nucleus habenulae" RELATED [BTO:0003685] +xref: BAMS:N.Hb +xref: BTO:0003685 +xref: DHBA:10452 +xref: EHDAA2:0004710 +xref: Habenular:nuclei +xref: HBA:4521 +xref: http://www.snomedbrowser.com/Codes/Details/279303009 +is_a: UBERON:0007692 ! nucleus of thalamus +intersection_of: UBERON:0000125 ! neural nucleus +intersection_of: part_of UBERON:0001904 ! habenula +relationship: part_of UBERON:0001904 ! habenula + +[Term] +id: UBERON:0008994 +name: equine glandular stomach +def: "Stomach found in horses; includes cardiac, proper gastric and pyloric glandular zones." [BTO:0003791] +synonym: "stomachus glandularis" RELATED [BTO:0003791] +xref: BTO:0003791 +is_a: UBERON:0000945 {source="BTO"} ! stomach + +[Term] +id: UBERON:0008995 +name: nucleus of cerebellar nuclear complex +def: "Four accumulations of gray substance embedded in the white substance of the cerebellum, comprising the nucleus dentatus, nucleus emboliformis, nucleus globosus, and nucleus fastigii." [BTO:0003835] +subset: pheno_slim +synonym: "cerebellar nucleus" EXACT [BTO:0003835] +synonym: "deep cerebellar nucleus" EXACT [] +xref: BTO:0003835 +xref: EMAPA:35272 +xref: FMA:321695 +xref: http://www.snomedbrowser.com/Codes/Details/279220006 +xref: MA:0000203 +is_a: UBERON:0009662 ! hindbrain nucleus +intersection_of: UBERON:0002308 ! nucleus of brain +intersection_of: part_of UBERON:0002130 ! cerebellar nuclear complex +relationship: contributes_to_morphology_of UBERON:0002037 ! cerebellum +relationship: part_of UBERON:0002130 ! cerebellar nuclear complex +relationship: present_in_taxon NCBITaxon:119203 {source="ISBN:0471888893"} +relationship: present_in_taxon NCBITaxon:1476529 +relationship: present_in_taxon NCBITaxon:32524 +relationship: present_in_taxon NCBITaxon:7878 +relationship: present_in_taxon NCBITaxon:7896 +relationship: present_in_taxon NCBITaxon:8292 + +[Term] +id: UBERON:0008998 +name: vasculature of brain +alt_id: UBERON:0005284 +def: "System pertaining to blood vessels in the brain." [BTO:0003840] +subset: efo_slim +synonym: "brain vasculature" EXACT [] +synonym: "cerebrovascular system" EXACT [BTO:0003840] +synonym: "intracerebral vasculature" EXACT [FMA:61935] +xref: BTO:0003840 +xref: EFO:0003491 +xref: EMAPA:35186 +xref: FMA:242007 +xref: FMA:61935 +xref: http://www.snomedbrowser.com/Codes/Details/362029003 +xref: TAO:0000099 +xref: ZFA:0000099 +is_a: UBERON:0006876 ! vasculature of organ +is_a: UBERON:0036303 ! vasculature of central nervous system +relationship: part_of UBERON:0000955 ! brain + +[Term] +id: UBERON:0008999 +name: hoof lamina +def: "The tissues which attach the third phalanx to the hoof wall." [BTO:0003997] +synonym: "hoof laminae" RELATED [BTO:0003997] +xref: BTO:0003997 +xref: http://www.snomedbrowser.com/Codes/Details/370743008 +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: connects UBERON:5106050 ! digit 3 digitopodial skeleton +relationship: part_of UBERON:0008963 {source="BTO"} ! hoof + +[Term] +id: UBERON:0009000 +name: ischial spine +def: "A bony process projecting backward and medialward from the posterior border of the ischium." [BTO:0004149] +synonym: "spina ischialis" EXACT [FMA:17028] +synonym: "spine of ischium" RELATED [http://en.wikipedia.org/wiki/Ischial_spine] +synonym: "spine of the ischium" RELATED [http://en.wikipedia.org/wiki/Ischial_spine] +synonym: "the ischial spines" RELATED [http://en.wikipedia.org/wiki/Ischial_spine] +xref: BTO:0004149 +xref: FMA:17028 +xref: http://www.snomedbrowser.com/Codes/Details/18074002 +xref: Ischial:spine +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0013706 ! bone spine +intersection_of: UBERON:0013706 ! bone spine +intersection_of: part_of UBERON:0001274 ! ischium +relationship: part_of UBERON:0001274 ! ischium + +[Term] +id: UBERON:0009002 +name: placental membrane +def: "The membrane separating the fetal from the maternal blood in the placenta." [BTO:0004196] +subset: pheno_slim +synonym: "placental barrier" RELATED [BTO:0004196] +xref: BTO:0004196 +xref: http://linkedlifedata.com/resource/umls/id/C0230984 +xref: http://www.snomedbrowser.com/Codes/Details/256591004 +xref: NCIT:C34253 +xref: UMLS:C0230984 {source="ncithesaurus:Placental_Membrane"} +is_a: UBERON:0000158 ! membranous layer +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: adjacent_to UBERON:0000922 ! embryo +relationship: part_of UBERON:0001987 {source="BTO"} ! placenta +relationship: part_of UBERON:0005292 ! extraembryonic tissue + +[Term] +id: UBERON:0009005 +name: femorotibial joint +def: "One of the two primary bendings of a typical leg, pertains to the femur and the tibia." [BTO:0004396] +synonym: "femoratibial joint" EXACT [] +synonym: "knee" RELATED [] +synonym: "tibiofemoral joint" EXACT [FMA:43571] +xref: BTO:0004396 +xref: FMA:43571 +xref: http://www.snomedbrowser.com/Codes/Details/182203004 +is_a: UBERON:0003840 ! hindlimb joint +is_a: UBERON:0011139 {source="FMA"} ! synovial limb joint +relationship: connects UBERON:0000979 ! tibia +relationship: connects UBERON:0000981 ! femur +relationship: part_of UBERON:0001485 ! knee joint + +[Term] +id: UBERON:0009006 +name: deep inguinal lymph node +def: "One of several small inconstant lymph nodes, proximal, intermediate and distal deep to the fascia lata and medial to the femoral vein; they receive lymph from the deep structures of the lower limb, from the glans penis and from superficial inguinal nodes; efferents pass to the external iliac nodes." [BTO:0004548] +synonym: "deep inguinal node" EXACT [FMA:44225] +synonym: "nodi lymphatici inguinales profundi" RELATED LATIN [BTO:0004548] +synonym: "nodus lymphaticus inguinalis profundus" EXACT LATIN [FMA:44225] +xref: BTO:0004548 +xref: FMA:44225 +xref: http://en.wikipedia.org/wiki/Deep_inguinal_lymph_nodes +xref: http://www.snomedbrowser.com/Codes/Details/65266007 +is_a: UBERON:0001542 {source="Wikipedia"} ! inguinal lymph node + +[Term] +id: UBERON:0009007 +name: superficial inguinal lymph node +def: "A group of 12-20 lymph nodes that lie in the subcutaneous tissue below the inguinal ligament and along the terminal part of the great saphenous vein; they drain the skin and subcutaneous tissue of the lower abdominal wall, perineum, buttocks, external genitalia, and lower limbs." [BTO:0004549] +synonym: "lymph node of Cloquet" EXACT [FMA:5036] +synonym: "lymph node of Rosenmuller" EXACT [FMA:5036] +synonym: "nodi lymphatici inguinales superficiali" RELATED PLURAL [] +synonym: "nodus lymphaticus inguinalis superficialis" EXACT LATIN [FMA:5036] +synonym: "superficial inguinal node" EXACT [FMA:5036] +xref: BTO:0004549 +xref: FMA:5036 +xref: http://en.wikipedia.org/wiki/Superficial_inguinal_lymph_nodes +xref: http://www.snomedbrowser.com/Codes/Details/113340006 +is_a: UBERON:0001542 {source="Wikipedia"} ! inguinal lymph node +is_a: UBERON:0015917 ! superficial lymph node + +[Term] +id: UBERON:0009009 +name: carotid sinus nerve +def: "A sensory branch of the glossopharyngeal nerve (CN IX) carrying signals from the baroceptors (blood pressure receptors) in the bifurcation of the carotid artery to the nucleus of the solitary tract (nucleus solitarius)." [http://medical-dictionary.thefreedictionary.com/carotid+sinus+nerve] +synonym: "carotid branch of glossopharyngeal nerve" EXACT [FMA:53488] +synonym: "Hering sinus nerve" EXACT [http://medical-dictionary.thefreedictionary.com/carotid+sinus+nerve] +synonym: "ramus sinus carotici" EXACT LATIN [FMA:53488] +synonym: "ramus sinus carotici nervi glossopharyngei" EXACT LATIN [] +synonym: "ramus sinus carotici nervus glossopharyngei" EXACT LATIN [FMA:53488, FMA:TA] +synonym: "sinus nerve of Hering" EXACT [http://medical-dictionary.thefreedictionary.com/carotid+sinus+nerve] +xref: BTO:0004978 +xref: FMA:53488 +xref: http://en.wikipedia.org/wiki/Branch_of_glossopharyngeal_nerve_to_carotid_sinus +xref: http://www.snomedbrowser.com/Codes/Details/50624003 +is_a: UBERON:0011779 ! nerve of head region +relationship: branching_part_of UBERON:0001649 {source="FMA"} ! glossopharyngeal nerve +relationship: extends_fibers_into UBERON:0009050 ! nucleus of solitary tract +relationship: has_part UBERON:0004019 ! baroreceptor +relationship: part_of UBERON:0001649 ! glossopharyngeal nerve + +[Term] +id: UBERON:0009010 +name: periurethral tissue +def: "Any portion of tissue that surrounds a urethra." [UBERON:cjm] +xref: BTO:0005081 +xref: http://www.snomedbrowser.com/Codes/Details/256880003 +is_a: UBERON:0000479 ! tissue +intersection_of: UBERON:0000479 ! tissue +intersection_of: surrounds UBERON:0000057 ! urethra +relationship: part_of UBERON:0001556 ! lower urinary tract +relationship: surrounds UBERON:0000057 ! urethra + +[Term] +id: UBERON:0009013 +name: white fibrocartilage +def: "fibrocartilage in which strong bundles of white fibrous tissue predominate." [http://www.ufrgs.br/imunovet/molecular_immunology/muscles.html] +xref: EMAPA:37806 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/3008003 +xref: MA:0000486 +is_a: UBERON:0001995 {source="cjm"} ! fibrocartilage + +[Term] +id: UBERON:0009014 +name: lower back skin +def: "A zone of skin that is part of a lower back." [OBOL:automatic] +subset: organ_slim +xref: EMAPA:37281 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/286601005 +xref: MA:0000504 +is_a: UBERON:0001068 ! skin of back +is_a: UBERON:0003836 {source="MA"} ! abdominal segment skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0005462 ! lower back +relationship: part_of UBERON:0005462 ! lower back + +[Term] +id: UBERON:0009015 +name: upper back skin +def: "A zone of skin that is part of a dorsal thoracic segment of trunk." [OBOL:automatic] +xref: EMAPA:37280 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/304890003 +xref: MA:0000510 +is_a: UBERON:0001068 ! skin of back +is_a: UBERON:0001418 {source="MA"} ! skin of thorax +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0008231 ! dorsal thoracic segment of trunk +relationship: part_of UBERON:0008231 ! dorsal thoracic segment of trunk + +[Term] +id: UBERON:0009016 +name: ciliary stroma +synonym: "ocular ciliary stroma" EXACT [] +synonym: "stroma of ciliary body" EXACT [] +xref: EMAPA:35241 +xref: FMA:312260 +xref: http://www.snomedbrowser.com/Codes/Details/280868008 +xref: MA:0001239 +is_a: UBERON:0003891 ! stroma +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001775 {source="MA"} ! ciliary body + +[Term] +id: UBERON:0009020 +name: left uterine horn +def: "An uterine horn that is in the left side of a uterus." [OBOL:automatic] +xref: EMAPA:37374 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/245482004 +xref: MA:0001727 +is_a: UBERON:0002247 ! uterine horn +intersection_of: UBERON:0002247 ! uterine horn +intersection_of: in_left_side_of UBERON:0000995 ! uterus +relationship: in_left_side_of UBERON:0000995 ! uterus + +[Term] +id: UBERON:0009022 +name: right uterine horn +def: "An uterine horn that is in the right side of a uterus." [OBOL:automatic] +xref: EMAPA:37375 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/245481006 +xref: MA:0001728 +is_a: UBERON:0002247 ! uterine horn +intersection_of: UBERON:0002247 ! uterine horn +intersection_of: in_right_side_of UBERON:0000995 ! uterus +relationship: in_right_side_of UBERON:0000995 ! uterus + +[Term] +id: UBERON:0009024 +name: adrenal gland X zone +def: "A transient cortical layer juxtaposed to the medulla and the zona reticularis; in males, this zone rapidly involutes at the onset of puberty whereas this zone persists in females until the first pregnancy or later in adulthood in non-pregnant females" [MP:0008296] +subset: pheno_slim +synonym: "juvenile zone" RELATED [MA:0001888] +synonym: "X zone" BROAD [MP:0008296] +synonym: "x-zone" BROAD [MP:0008296] +xref: http://www.snomedbrowser.com/Codes/Details/24306004 +xref: MA:0001888 +is_a: UBERON:0009753 {source="MA"} ! adrenal gland cortex zone +relationship: contributes_to_morphology_of UBERON:0001235 ! adrenal cortex + +[Term] +id: UBERON:0009025 +name: gastroepiploic artery +def: "One of two (right and left) arteries along the greater curvature of the stomach that supply blood to the greater omentum and stomach." [NCIT:C52857] +subset: grouping_class +xref: EMAPA:37082 {source="MA:th"} +xref: Gastroepiploic:artery +xref: http://linkedlifedata.com/resource/umls/id/C0447070 +xref: http://www.snomedbrowser.com/Codes/Details/261401008 +xref: MA:0001962 +xref: MESH:D024405 +xref: NCIT:C52857 +xref: UMLS:C0447070 {source="ncithesaurus:Gastroepiploic_Artery"} +is_a: UBERON:0001637 {source="MA"} ! artery +is_a: UBERON:0003497 ! abdomen blood vessel +relationship: supplies UBERON:0000945 ! stomach +relationship: supplies UBERON:0005448 ! greater omentum + +[Term] +id: UBERON:0009026 +name: iliac circumflex artery +def: "One of two (deep circumflex and superficial circumflex) iliac arteries that supply the lower abdomen, inguinal lymph nodes, sartorius, and tensor fasciae latae." [ncithesaurus:Circumflex_Iliac_Artery] +xref: EMAPA:37084 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C0447101 +xref: http://www.snomedbrowser.com/Codes/Details/244327004 +xref: MA:0001975 +xref: NCIT:C52863 +xref: UMLS:C0447101 {source="ncithesaurus:Circumflex_Iliac_Artery"} +is_a: UBERON:0001637 {source="MA"} ! artery + +[Term] +id: UBERON:0009027 +name: vesical artery +def: "An artery that supplies blood to the urinary bladder." [http://orcid.org/0000-0002-6601-2165] +synonym: "arteria vesicali" EXACT LATIN [] +synonym: "vesical arteries" EXACT PLURAL [] +xref: EMAPA:37131 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/244307000 +xref: MA:0002078 +is_a: UBERON:0001637 ! artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0001255 ! urinary bladder +relationship: supplies UBERON:0001255 ! urinary bladder + +[Term] +id: UBERON:0009029 +name: pudendal vein +synonym: "pudic vein" RELATED [] +xref: EMAPA:37184 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/395225000 +xref: MA:0002202 +is_a: UBERON:0001638 {source="MA"} ! vein +is_a: UBERON:0003520 ! pelvis blood vessel + +[Term] +id: UBERON:0009030 +name: left pulmonary vein +def: "Vein that drains left lung and returns blood to the heart." [http://orcid.org/0000-0002-6601-2165] +xref: EMAPA:37165 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C0226670 +xref: http://www.snomedbrowser.com/Codes/Details/304057004 +xref: MA:0002207 +xref: NCIT:C48946 +xref: UMLS:C0226670 {source="ncithesaurus:Left_Pulmonary_Vein"} +is_a: UBERON:0002016 ! pulmonary vein +intersection_of: UBERON:0002016 ! pulmonary vein +intersection_of: drains UBERON:0002168 ! left lung +relationship: drains UBERON:0002168 ! left lung + +[Term] +id: UBERON:0009032 +name: right pulmonary vein +def: "Vein that drains right lung and returns blood to the heart." [http://orcid.org/0000-0002-6601-2165] +xref: EMAPA:37379 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C0226669 +xref: http://www.snomedbrowser.com/Codes/Details/304056008 +xref: MA:0002208 +xref: NCIT:C48947 +xref: UMLS:C0226669 {source="ncithesaurus:Right_Pulmonary_Vein"} +is_a: UBERON:0002016 ! pulmonary vein +intersection_of: UBERON:0002016 ! pulmonary vein +intersection_of: drains UBERON:0002167 ! right lung +relationship: drains UBERON:0002167 ! right lung + +[Term] +id: UBERON:0009035 +name: renal straight tubule +def: "Any region of a nephron tubule that is straight. Examples: distal convoluted tubule, proximal convoluted tuble." [http://orcid.org/0000-0002-6601-2165] +synonym: "kidney straight tubule" EXACT [MA:0002634] +synonym: "straight tubule" EXACT [] +xref: EMAPA:37489 {source="MA:th"} +xref: http://en.wikipedia.org/wiki/Tubuli_seminiferi_recti +xref: http://www.snomedbrowser.com/Codes/Details/245151008 +xref: MA:0002634 +is_a: UBERON:0007685 ! region of nephron tubule + +[Term] +id: UBERON:0009038 +name: sulcus ampullaris +def: "The groove on the external surface of the ampulla of each semicircular duct where the nerve enters the ampullary crest." [http://www.medilexicon.com/medicaldictionary.php?s=ampullary+groove] +subset: pheno_slim +synonym: "ampullary groove" EXACT [FMA:74584] +synonym: "ampullary sulcus" EXACT [] +xref: FMA:74584 +xref: http://www.snomedbrowser.com/Codes/Details/368954006 +xref: MA:0002835 +is_a: UBERON:0006800 {source="FMA"} ! anatomical line +relationship: contributes_to_morphology_of UBERON:0001846 ! internal ear +relationship: part_of UBERON:0004043 {source="MA"} ! semicircular canal ampulla + +[Term] +id: UBERON:0009039 +name: lymph node germinal center +def: "A germinal center that is located in a lymph node" [CL:tm] +subset: pheno_slim +synonym: "germinal center" BROAD [BTO:0003671] +synonym: "lymph node activated zone" RELATED [] +synonym: "lymph node central zone" RELATED [] +synonym: "lymph node light zone" RELATED [] +synonym: "lymph node nodule" RELATED [] +xref: BTO:0003671 +xref: CALOHA:TS-1269 +xref: EMAPA:35528 +xref: http://www.snomedbrowser.com/Codes/Details/327147000 +xref: MA:0002989 +xref: NCIT:C49757 +is_a: UBERON:0010754 ! germinal center +intersection_of: UBERON:0010754 ! germinal center +intersection_of: part_of UBERON:0000029 ! lymph node +relationship: part_of UBERON:0010753 {source="MA"} ! lymph node secondary follicle + +[Term] +id: UBERON:0009040 +name: deep circumflex iliac artery +def: "The deep circumflex iliac artery (or deep iliac circumflex artery) is an artery in the pelvis that travels along the iliac crest of the pelvic bone." [http://en.wikipedia.org/wiki/Deep_circumflex_iliac_artery] +synonym: "arteria circumflexa ilium profunda" EXACT [http://en.wikipedia.org/wiki/Deep_circumflex_iliac_artery] +synonym: "arteria circumflexa ilium profunda" RELATED LATIN [http://en.wikipedia.org/wiki/Deep_circumflex_iliac_artery] +synonym: "deep iliac circumflex" RELATED [http://en.wikipedia.org/wiki/Deep_circumflex_iliac_artery] +synonym: "deep iliac circumflex artery" RELATED [http://en.wikipedia.org/wiki/Deep_circumflex_iliac_artery] +xref: FMA:20687 +xref: http://en.wikipedia.org/wiki/Deep_circumflex_iliac_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226405 +xref: http://www.snomedbrowser.com/Codes/Details/181353005 +xref: NCIT:C32432 +xref: UMLS:C0226405 {source="ncithesaurus:Deep_Circumflex_Iliac_Artery"} +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0009026 ! iliac circumflex artery +intersection_of: UBERON:0009026 ! iliac circumflex artery +intersection_of: part_of UBERON:0035551 ! deep vasculature +relationship: branching_part_of UBERON:0001308 {source="FMA"} ! external iliac artery +relationship: part_of UBERON:0001308 {source="FMA"} ! external iliac artery +relationship: part_of UBERON:0035551 ! deep vasculature + +[Term] +id: UBERON:0009041 +name: superficial circumflex iliac artery +def: "The superficial iliac circumflex artery (or superficial circumflex iliac), the smallest of the cutaneous branches of the femoral artery, arises close to the superficial epigastric artery, and, piercing the fascia lata, runs lateralward, parallel with the inguinal ligament, as far as the crest of the ilium. It divides into branches which supply the integument of the groin, the superficial fascia, and the superficial subinguinal lymph glands, anastomosing with the deep iliac circumflex, the superior gluteal and lateral femoral circumflex arteries." [http://en.wikipedia.org/wiki/Superficial_circumflex_iliac_artery] +synonym: "arteria circumflexa ilium superficialis" EXACT [http://en.wikipedia.org/wiki/Superficial_iliac_circumflex_artery] +synonym: "iliac circumflex artery" RELATED [http://en.wikipedia.org/wiki/Superficial_iliac_circumflex_artery] +synonym: "superficial circumflex iliac artery" RELATED [http://en.wikipedia.org/wiki/Superficial_iliac_circumflex_artery] +xref: FMA:20737 +xref: http://en.wikipedia.org/wiki/Superficial_circumflex_iliac_artery +xref: http://linkedlifedata.com/resource/umls/id/C0738891 +xref: NCIT:C52864 +xref: UMLS:C0738891 {source="ncithesaurus:Superficial_Circumflex_Iliac_Artery"} +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0009026 ! iliac circumflex artery +intersection_of: UBERON:0009026 ! iliac circumflex artery +intersection_of: part_of UBERON:0035549 ! vasculature of integument +relationship: branching_part_of UBERON:0002060 {source="FMA"} ! femoral artery +relationship: part_of UBERON:0002060 ! femoral artery +relationship: part_of UBERON:0035549 ! vasculature of integument + +[Term] +id: UBERON:0009042 +name: prostatic venous plexus +def: "The prostatic veins form a well-marked prostatic plexus which lies partly in the fascial sheath of the prostate and partly between the sheath and the prostatic capsule. It communicates with the pudendal and vesical plexuses." [http://en.wikipedia.org/wiki/Prostatic_venous_plexus] +synonym: "plexus venosus prostaticus" RELATED LATIN [http://en.wikipedia.org/wiki/Prostatic_venous_plexus] +synonym: "pudendal venous plexus" RELATED [FMA:29711] +xref: FMA:29711 +xref: http://en.wikipedia.org/wiki/Prostatic_venous_plexus +xref: http://www.snomedbrowser.com/Codes/Details/303052003 +is_a: UBERON:0001593 ! venous plexus +is_a: UBERON:0006876 ! vasculature of organ +intersection_of: UBERON:0001593 ! venous plexus +intersection_of: part_of UBERON:0002367 ! prostate gland +relationship: part_of UBERON:0002367 ! prostate gland + +[Term] +id: UBERON:0009044 +name: pudendal venous plexus +def: "The pudendal plexus (vesicoprostatic plexus) lies behind the arcuate pubic ligament and the lower part of the pubic symphysis, and in front of the bladder and prostate. Its chief tributary is the deep dorsal vein of the penis, but it also receives branches from the front of the bladder and prostate. It communicates with the vesical plexus and with the internal pudendal vein and drains into the vesical and hypogastric veins." [http://en.wikipedia.org/wiki/Pudendal_plexus_(veins)] +xref: http://en.wikipedia.org/wiki/Pudendal_plexus_(veins) +xref: http://www.snomedbrowser.com/Codes/Details/65326006 +is_a: UBERON:0001593 ! venous plexus +is_a: UBERON:0002201 ! vasculature of trunk +relationship: part_of UBERON:0000916 ! abdomen + +[Term] +id: UBERON:0009046 +name: inferior external pudendal vein +synonym: "inferior external pudic vein" RELATED [] +xref: EMAPA:37155 {source="MA:th"} +xref: MA:0002203 +is_a: UBERON:0018253 ! external pudendal vein + +[Term] +id: UBERON:0009047 +name: superior external pudendal vein +synonym: "superior external pudic vein" RELATED [] +xref: EMAPA:37192 {source="MA:th"} +xref: MA:0002204 +is_a: UBERON:0018253 ! external pudendal vein + +[Term] +id: UBERON:0009048 +name: deep external pudendal vein +synonym: "deep external pudic vein" RELATED [] +xref: FMA:44488 +is_a: UBERON:0018253 ! external pudendal vein +is_a: UBERON:0035552 ! deep vein +intersection_of: UBERON:0018253 ! external pudendal vein +intersection_of: part_of UBERON:0035551 ! deep vasculature + +[Term] +id: UBERON:0009049 +name: superficial external pudendal vein +synonym: "superficial external pudic vein" RELATED [] +xref: FMA:21377 +is_a: UBERON:0018253 ! external pudendal vein +is_a: UBERON:0035550 ! superficial vein +intersection_of: UBERON:0018253 ! external pudendal vein +intersection_of: part_of UBERON:0035549 ! vasculature of integument + +[Term] +id: UBERON:0009050 +name: nucleus of solitary tract +def: "A neural nucleus that is part of the solitary tract nuclear complex. The solitary tract and nucleus are structures in the brainstem that carry and receive visceral sensation and taste from the facial (VII), glossopharyngeal (IX) and vagus (X) cranial nerves. [WP,unvetted]." [http://en.wikipedia.org/wiki/Solitary_nucleus, OBOL:automatic] +synonym: "Geschmackskern@de" RELATED [BTO:0003963] +synonym: "nuclei tractus solitarii" RELATED LATIN [NeuroNames:742] +synonym: "nucleus of the solitary tract" RELATED [BIRNLEX:1429] +synonym: "nucleus of the tractus solitarius" EXACT [BIRNLEX:1429] +synonym: "nucleus of tractus solitarius" EXACT [http://en.wikipedia.org/wiki/Solitary_nucleus] +synonym: "nucleus solitarius" RELATED LATIN [NeuroNames:742] +synonym: "nucleus tracti solitarii" RELATED LATIN [NeuroNames:742] +synonym: "nucleus tractus solitarii" RELATED LATIN [BTO:0003963] +synonym: "nucleus tractus solitarii medullae oblongatae" EXACT LATIN [http://en.wikipedia.org/wiki/Solitary_nucleus] +synonym: "solitary nuclear complex" RELATED [NeuroNames:742] +synonym: "solitary nucleus" EXACT [] +synonym: "solitary nucleus" RELATED [BTO:0003963] +synonym: "solitary tract nucleus" EXACT [] +xref: BAMS:NTS +xref: BAMS:Sol +xref: BIRNLEX:1429 +xref: BM:Me-NS +xref: BTO:0003963 +xref: DHBA:12557 +xref: EMAPA:35787 +xref: EV:0100288 +xref: FMA:256691 +xref: GAID:593 +xref: HBA:9653 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=742 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=742 {source="BIRNLEX:1429"} +xref: http://linkedlifedata.com/resource/umls/id/C0175518 +xref: MA:0001052 +xref: MBA:651 +xref: MESH:D017552 +xref: NCIT:C13067 +xref: ncithesaurus:Nucleus_of_the_Solitary_Tract +xref: Solitary:nucleus +xref: UMLS:C0175518 {source="BIRNLEX:1429"} +xref: UMLS:C0175518 {source="ncithesaurus:Solitary_Nucleus"} +is_a: UBERON:0007635 ! nucleus of medulla oblongata +is_a: UBERON:0011775 {source="Wikipedia"} ! vagus nerve nucleus +intersection_of: UBERON:0002308 ! nucleus of brain +intersection_of: part_of UBERON:0002126 ! solitary tract nuclear complex +relationship: part_of UBERON:0002126 ! solitary tract nuclear complex + +[Term] +id: UBERON:0009051 +name: gelatinous nucleus of solitary tract +xref: FMA:77463 +xref: MBA:674 +is_a: UBERON:0009050 {source="FMA"} ! nucleus of solitary tract + +[Term] +id: UBERON:0009052 +name: medial nucleus of solitary tract +xref: FMA:229585 +xref: MBA:691 +is_a: UBERON:0009050 {source="FMA"} ! nucleus of solitary tract + +[Term] +id: UBERON:0009053 +name: dorsal nucleus of trapezoid body +synonym: "dorsal nucleus of trapezoid body" EXACT [BIRNLEX:2575] +synonym: "nucleus dorsalis corporis trapezoidei" EXACT LATIN [] +xref: BIRNLEX:2575 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1282 +xref: http://linkedlifedata.com/resource/umls/id/C0228438 +xref: http://linkedlifedata.com/resource/umls/id/C1289450 +xref: http://www.snomedbrowser.com/Codes/Details/369021001 +xref: UMLS:C0228438 {source="BIRNLEX:2575"} +xref: UMLS:C1289450 {source="BIRNLEX:2575"} +is_a: UBERON:0007633 ! nucleus of trapezoid body + +[Term] +id: UBERON:0009054 +name: open circulatory system +comment: The Open Circulatory System is a system in which fluid (called hemolymph) in a cavity called the hemocoel bathes the organs directly with oxygen and nutrients and there is no distinction between blood and interstitial fluid; this combined fluid is called hemolymph or haemolymph +is_a: UBERON:0001009 {source="GO"} ! circulatory system + +[Term] +id: UBERON:0009055 +name: closed circulatory system +is_a: UBERON:0001009 {source="GO"} ! circulatory system + +[Term] +id: UBERON:0009056 +name: two-pass circulatory system +def: "A closed circulatory system in which blood passes twice through the heart to supply the body once." [GO:0035905, http://en.wikipedia.org/wiki/Double_circulatory_system] +xref: http://en.wikipedia.org/wiki/Double_circulatory_system +is_a: UBERON:0009055 ! closed circulatory system + +[Term] +id: UBERON:0009057 +name: one-pass circulatory system +def: "A closed circulatory system in which blood passes once through the heart to supply the body once." [GO:0035907] +is_a: UBERON:0009055 ! closed circulatory system + +[Term] +id: UBERON:0009058 +name: faveolus +def: "A bellows-shaped respiratory unit extending from the outer wall of the lung into a central air space." [http://www.ncbi.nlm.nih.gov/pubmed/12869615] +comment: Dunker (1978) coined the terms ediculae or faveoli to describe the unit structure of the reptilian parenchymal, which are analogous to mammalian alveoli, but are up to 1,000 times larger than alveoli of similar sized mammals[PMID:12625309] +synonym: "edicula" RELATED SENSU [http://www.ncbi.nlm.nih.gov/pubmed/12625309] +synonym: "faveoli" RELATED PLURAL [] +synonym: "lung faveolus" EXACT [] +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010000 ! multicellular anatomical structure +relationship: part_of UBERON:0002048 ! lung + +[Term] +id: UBERON:0009060 +name: air sac +def: "Any of the membranous air-filled extensions of the lungs of birds, which increase the efficiency of gaseous exchange in the lungs" [http://en.wikipedia.org/wiki/Bird_anatomy#Respiratory_system, http://www.thefreedictionary.com/air+sac] +comment: Three distinct sets of organs perform respiration-the anterior air sacs (interclavicular, cervicals, and anterior thoracics), the lungs, and the posterior air sacs (posterior thoracics and abdominals). The posterior and anterior air sacs, typically nine, expand during inhalation. Air enters the bird via the trachea. Half of the inhaled air enters the posterior air sacs, the other half passes through the lungs and into the anterior air sacs. Air from the anterior air sacs empties directly into the trachea and out the bird's mouth or nares. The posterior air sacs empty their air into the lungs. Air passing through the lungs as the bird exhales is expelled via the trachea. Some taxonomic groups (Passeriformes) possess 7 air sacs, as the clavicular air sacs may interconnect or be fused with the cranial thoracic air sacs[WP] +synonym: "psotcranial air sac" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "sacci pneumatici" EXACT LATIN [] +xref: http://www.snomedbrowser.com/Codes/Details/49081009 +xref: MESH:D000400 +xref: NCIT:C120926 +xref: Respiratory_system +is_a: UBERON:0010000 ! multicellular anatomical structure +relationship: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0009061 +name: anterior air sac +comment: interclavicular, cervicals, & anterior thoracics +subset: grouping_class +synonym: "cranial air sac" RELATED [] +is_a: UBERON:0009060 ! air sac +disjoint_from: UBERON:0009062 {source="lexical"} ! posterior air sac + +[Term] +id: UBERON:0009062 +name: posterior air sac +comment: Half of the inhaled air enters the posterior air sacs. The posterior air sacs empty their air into the lungs. // posterior thoracics & abdominals +subset: grouping_class +synonym: "caudal air sac" RELATED [] +is_a: UBERON:0009060 ! air sac + +[Term] +id: UBERON:0009063 +name: interclavicular air sac +comment: Unapaired[Kardong] +is_a: UBERON:0009061 ! anterior air sac + +[Term] +id: UBERON:0009064 +name: cervical air sac +xref: http://www.snomedbrowser.com/Codes/Details/62426003 +is_a: UBERON:0009061 ! anterior air sac +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0001004 {source="ISBN:0073040584"} ! respiratory system + +[Term] +id: UBERON:0009065 +name: anterior thoracic air sac +synonym: "cranial thoracic air sac" RELATED [] +synonym: "cranial thoracic sac" RELATED [] +xref: http://www.snomedbrowser.com/Codes/Details/17911004 +is_a: UBERON:0009061 ! anterior air sac +is_a: UBERON:0015212 ! lateral structure +disjoint_from: UBERON:0009066 {source="lexical"} ! posterior thoracic air sac +relationship: in_lateral_side_of UBERON:0001004 {source="ISBN:0073040584"} ! respiratory system + +[Term] +id: UBERON:0009066 +name: posterior thoracic air sac +synonym: "caudal thoracic air sac" RELATED [] +synonym: "caudal thoracic sac" RELATED [] +xref: http://www.snomedbrowser.com/Codes/Details/10576005 +is_a: UBERON:0009062 ! posterior air sac +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0001004 {source="ISBN:0073040584"} ! respiratory system + +[Term] +id: UBERON:0009067 +name: abdominal air sac +xref: http://www.snomedbrowser.com/Codes/Details/43701009 +is_a: UBERON:0009062 ! posterior air sac +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0001004 {source="ISBN:0073040584"} ! respiratory system + +[Term] +id: UBERON:0009071 +name: mesobronchus +subset: organ_slim +synonym: "mesobronchi" RELATED PLURAL [] +is_a: UBERON:0002182 {source="ISBN:0073040584"} ! main bronchus +is_a: UBERON:0035767 ! intrapulmonary bronchus +relationship: connected_to UBERON:0009060 ! air sac + +[Term] +id: UBERON:0009072 +name: ventrobronchus +subset: organ_slim +synonym: "ventrobronchi" RELATED PLURAL [] +is_a: UBERON:0035767 ! intrapulmonary bronchus +relationship: connected_to UBERON:0008961 ! parabronchus + +[Term] +id: UBERON:0009073 +name: dorsobronchus +synonym: "dorsobronchi" RELATED PLURAL [] +is_a: UBERON:0002183 {notes="secondary"} ! lobar bronchus + +[Term] +id: UBERON:0009074 +name: syrinx organ +def: "vocal organ of birds, located at the base of a trachea" [http://en.wikipedia.org/wiki/Syrinx_(bird_anatomy)] +subset: organ_slim +synonym: "avian vocal organ" RELATED [] +synonym: "syrinx" RELATED [] +xref: http://en.wikipedia.org/wiki/Syrinx_(bird_anatomy) +xref: NCIT:C111323 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0034681 ! vocal organ +relationship: part_of UBERON:0003126 ! trachea + +[Term] +id: UBERON:0009075 +name: membrana tympaniformis +def: "A anatomical wall that is part of a syrinx organ." [OBOL:automatic] +synonym: "syrinx organ wall" EXACT [] +synonym: "wall of syrinx" EXACT [http://en.wikipedia.org/wiki/Syrinx_(bird_anatomy)] +is_a: UBERON:0000060 ! anatomical wall +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0009074 ! syrinx organ +relationship: part_of UBERON:0009074 ! syrinx organ + +[Term] +id: UBERON:0009076 +name: membrana tympaniformis lateralis +synonym: "lateral wall of syrinx" EXACT [] +is_a: UBERON:0009075 ! membrana tympaniformis +disjoint_from: UBERON:0009077 {source="lexical"} ! membrana tympaniformis medialis + +[Term] +id: UBERON:0009077 +name: membrana tympaniformis medialis +synonym: "medial wall of syrinx" EXACT [] +is_a: UBERON:0009075 ! membrana tympaniformis + +[Term] +id: UBERON:0009078 +name: pessulus +def: "A delicate bar of cartilage connecting the dorsal and ventral extremities of the first pair of bronchial cartilages in the syrinx of birds" [http://www.encyclo.co.uk/webster/P/64] +is_a: UBERON:0003604 ! trachea cartilage +relationship: part_of UBERON:0009074 ! syrinx organ + +[Term] +id: UBERON:0009089 +name: inner medulla vasa recta descending limb +xref: KUPO:0001003 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0004776 {source="KUPO"} ! inner renal medulla vasa recta + +[Term] +id: UBERON:0009090 +name: outer medulla vasa recta descending limb +xref: KUPO:0001004 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0004775 {source="KUPO"} ! outer renal medulla vasa recta + +[Term] +id: UBERON:0009091 +name: vasa recta ascending limb +xref: KUPO:0001005 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0004726 {source="KUPO"} ! vasa recta + +[Term] +id: UBERON:0009092 +name: inner medulla vasa recta ascending limb +xref: KUPO:0001006 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0004776 {source="KUPO"} ! inner renal medulla vasa recta + +[Term] +id: UBERON:0009093 +name: outer medulla vasa recta ascending limb +xref: KUPO:0001007 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0004775 {source="KUPO"} ! outer renal medulla vasa recta + +[Term] +id: UBERON:0009095 +name: tip of renal papilla +synonym: "papillary tip" EXACT [KUPO:0001009] +synonym: "papillary tips" EXACT PLURAL [KUPO:0001009] +xref: KUPO:0001009 +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0001228 {source="KUPO"} ! renal papilla + +[Term] +id: UBERON:0009096 +name: obsolete gravid stage +comment: Obsoleted as the gravid stage is not a life cycle stage. A similar term may be recreated when we have stages specific to structures such as the uterus +is_obsolete: true +consider: UBERON:0009097 + +[Term] +id: UBERON:0009097 +name: gravid organism +def: "An organism containing a developing embryo, fetus, or unborn offspring within the body." [BTO:0004733] +synonym: "gravid" RELATED [BTO:0004733] +synonym: "pregnant adult" RELATED [BTO:0004733] +synonym: "pregnant adult stage" RELATED [BTO:0004733] +synonym: "pregnant organism" RELATED [] +synonym: "pregnant stage" RELATED [BTO:0004733] +xref: BTO:0004733 +is_a: UBERON:0007023 ! adult organism +intersection_of: UBERON:0007023 ! adult organism +intersection_of: has_part UBERON:0000922 ! embryo +relationship: has_part UBERON:0000922 ! embryo + +[Term] +id: UBERON:0009098 +name: gravid uterus +def: "The uterus in pregnancy" [http://medical-dictionary.thefreedictionary.com/gravid+uterus] +synonym: "womb" RELATED [] +xref: http://linkedlifedata.com/resource/umls/id/C1514389 +xref: http://www.snomedbrowser.com/Codes/Details/362253003 +xref: NCIT:C12406 +xref: ncithesaurus:Gravid_Uterus +xref: UMLS:C1514389 {source="ncithesaurus:Pregnant_Uterus"} +is_a: UBERON:0000995 ! uterus +intersection_of: UBERON:0000995 ! uterus +intersection_of: location_of UBERON:0000922 ! embryo +relationship: location_of UBERON:0000922 ! embryo +relationship: part_of UBERON:0009097 ! gravid organism + +[Term] +id: UBERON:0009099 +name: typhlosole +def: "An invagination of the intestinal epithelium that emanates from a lamina of mesenchymal cells located between the dorsal aorta and the upper intestine and constitute one of the two principal hematopoietic organs at the ammocoete stage of development." [http://en.wikipedia.org/wiki/Typhlosole, PMCID:PMC2093943] +xref: http://en.wikipedia.org/wiki/Typhlosole +is_a: UBERON:0005423 ! developing anatomical structure +relationship: develops_from UBERON:0003104 ! mesenchyme +relationship: part_of UBERON:0002390 ! hematopoietic system +relationship: part_of UBERON:0003929 ! digestive tract epithelium +relationship: part_of UBERON:0009101 ! ammocoete + +[Term] +id: UBERON:0009100 +name: nephric fold +def: "." [PMCID:PMC2093943] +comment: Lymphocytes are also abundant in the lamprey kidney, where large populations are intermingled around the renal tubules +is_a: UBERON:0005423 ! developing anatomical structure +relationship: part_of UBERON:0002390 ! hematopoietic system +relationship: part_of UBERON:0009101 ! ammocoete + +[Term] +id: UBERON:0009101 +name: ammocoete +def: "lamprey at larval stage" [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0002548 ! larva + +[Term] +id: UBERON:0009102 +name: supraneural body +def: "One of the primary immunological organs of the adult lamprey is the supraneural body. This structure lies dorsal to spinal column and becomes heavily populated with lymphocytes following after immune challenge." [https://doi.org/10.2307/1442643] +subset: organ_slim +synonym: "dorsal fat body" EXACT [PMCID:PMC2093943] +synonym: "pro-vertebral arch" EXACT [PMCID:PMC2093943] +is_a: UBERON:0004177 ! hemopoietic organ +is_a: UBERON:0005057 ! immune organ + +[Term] +id: UBERON:0009113 +name: obsolete thymic region +is_obsolete: true + +[Term] +id: UBERON:0009114 +name: cervical thymus +def: "A mature thymus that is entirely part of the cervical region." [https://orcid.org/0000-0002-6601-2165] +subset: organ_slim +is_a: UBERON:0002370 ! thymus +intersection_of: UBERON:0002370 ! thymus +intersection_of: part_of UBERON:0000974 ! neck +relationship: part_of UBERON:0000974 ! neck +relationship: present_in_taxon NCBITaxon:39107 +relationship: present_in_taxon NCBITaxon:9263 + +[Term] +id: UBERON:0009115 +name: thoracic thymus +def: "A mature thymus that is entirely part of thoracic region." [https://orcid.org/0000-0002-6601-2165] +subset: organ_slim +is_a: UBERON:0002370 ! thymus +is_a: UBERON:0005178 ! thoracic cavity element +intersection_of: UBERON:0002370 ! thymus +intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk + +[Term] +id: UBERON:0009116 +name: thymoid +def: "A thymus-like lympho-epithelial structures, in the tips of the gill filaments and the neighbouring secondary lamellae (both within the gill basket) of lamprey larvae." [http://www.ncbi.nlm.nih.gov/pubmed/21293377] +comment: Genes: FOXN1 +subset: organ_slim +is_a: UBERON:0003295 ! pharyngeal gland +is_a: UBERON:0004177 ! hemopoietic organ +is_a: UBERON:0005057 ! immune organ +is_a: UBERON:0005058 ! hemolymphoid system gland +is_a: UBERON:0006925 ! digestive system gland +relationship: located_in UBERON:0009119 ! branchial basket +relationship: part_of UBERON:0009101 ! ammocoete + +[Term] +id: UBERON:0009117 +name: indifferent gonad +def: "A gonad prior to differentiating into a definitive testis or ovary." [http://www.medterms.com/script/main/art.asp?articlekey=8981] +comment: typically part of the embryo - however, in male tammar wallabies the gonads are indifferent at the neonatal stage[8827321] +subset: organ_slim +synonym: "gonad rudiment" RELATED [] +xref: EHDAA2:0000716 +xref: http://linkedlifedata.com/resource/umls/id/C1512703 +xref: NCIT:C34192 +xref: UMLS:C1512703 {source="ncithesaurus:Indifferent_Gonad"} +is_a: UBERON:0000991 ! gonad +relationship: part_of UBERON:0009196 ! indifferent external genitalia + +[Term] +id: UBERON:0009118 +name: marsupium +def: "." [http://en.wikipedia.org/wiki/Pouch_(marsupial)] +synonym: "marsupial pouch" EXACT [] +synonym: "pouch" BROAD [] +xref: Pouch:(marsupial) +is_a: UBERON:0034929 ! external soft tissue zone +relationship: part_of UBERON:0003100 ! female organism + +[Term] +id: UBERON:0009119 +name: branchial basket +def: "The network-like non-segmented cartilaginous skeleton of the gill region of Petromyzontiformes and Holocephali, connected to the heart and surrounding respiratory tissue." [http://www.briancoad.com/dictionary/DicPics/branchial%20basket.htm, UBERON:cjm] +subset: cyclostome_subset +synonym: "gill basket" EXACT [http://www.briancoad.com/dictionary/DicPics/branchial%20basket.htm] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010912 ! subdivision of skeleton +relationship: has_part UBERON:0002418 ! cartilage tissue +relationship: part_of UBERON:0001042 ! chordate pharynx + +[Term] +id: UBERON:0009120 +name: gill filament +def: "Portion of tissue that projects outward from the gill and is a thread-like, soft, red respiratory and excretory structure." [http://www.briancoad.com/Dictionary/G.htm, ZFIN:ZDB-PUB-961014-576] +subset: efo_slim +synonym: "gill filaments" EXACT PLURAL [ZFA:0000667] +xref: BTO:0002150 +xref: EFO:0003554 +xref: TAO:0000667 +xref: ZFA:0000667 +is_a: UBERON:0000479 {source="ZFA"} ! tissue +relationship: part_of UBERON:0002535 {source="ZFA"} ! gill + +[Term] +id: UBERON:0009121 +name: vomeronasal nerve +def: "Nerve carrying fibers from the vomeronasal organ epithelium to the accessory olfactory bulb." [AAO:DSM, http://orcid.org/0000-0002-6601-2165, ISBN:0471888893] +synonym: "accessory olfactory bulb vomeronasal nerve" RELATED [BAMS:vn] +xref: AAO:0010608 +xref: BAMS:vn +xref: BAMS:von +xref: BTO:0001351 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1567 +xref: MBA:949 +xref: NLXANAT:1005018 +is_a: UBERON:0001785 {source="NIFSTD"} ! cranial nerve +intersection_of: UBERON:0001021 {source="Wikipedia"} ! nerve +intersection_of: extends_fibers_into UBERON:0004069 {source="Wikipedia"} ! accessory olfactory bulb +intersection_of: innervates UBERON:0003367 {source="Wikipedia"} ! epithelium of vomeronasal organ +relationship: develops_from UBERON:0003050 {source="ISBN:0471888893"} ! olfactory placode +relationship: extends_fibers_into UBERON:0004069 ! accessory olfactory bulb +relationship: innervates UBERON:0003367 ! epithelium of vomeronasal organ +relationship: part_of UBERON:0009954 ! vomeronasal system + +[Term] +id: UBERON:0009122 +name: adenohypophyseal placode +def: "The adenohypophyseal placode forms the anterior lobe of the pituitary gland and gives rise to the endocrine secretory cells of the pituitary" [http://www.ncbi.nlm.nih.gov/books/NBK53175/] +subset: efo_slim +synonym: "pituitary placode" RELATED [ZFA:0001198] +xref: EFO:0000229 +xref: TAO:0001198 +xref: XAO:0004208 +xref: ZFA:0001198 +is_a: UBERON:0002546 ! cranial placode +is_a: UBERON:0011814 {source="NCBIBook:NBK53175"} ! non-neurogenic ectodermal placode +relationship: develops_from UBERON:0005497 {source="ZFA"} ! non-neural ectoderm + +[Term] +id: UBERON:0009124 +name: geniculate placode +def: "Rostralmost epibranchial placode. Associated with 1st branchial cleft." [NCBIBook:NBK53175] +comment: Taxonomic equivalence to EHDAA2 class made on basis of shared development: gives rise to geniculate ganglion +synonym: "epibranchial placode 1" EXACT [EHDAA2:0004206] +synonym: "facial epibranchial placode" EXACT [XAO:0004211] +synonym: "facial placode" EXACT [ZFA:0001295] +synonym: "facial VII placode" RELATED [] +synonym: "hyoid placode" RELATED [ISBN:0471888893] +synonym: "hyoid VII placode" RELATED [ISBN:0471888893] +xref: EHDAA2:0004206 +xref: TAO:0001295 +xref: XAO:0004211 +xref: ZFA:0001295 +is_a: UBERON:0003078 {source="ZFA"} ! epibranchial placode + +[Term] +id: UBERON:0009125 +name: petrosal placode +def: "Epibranchial placode between geniculate and nodose. Associated with 2nd branchial cleft." [NCBIBook:NBK53175] +comment: Taxonomic equivalence to EHDAA2 class made on basis of shared development: gives rise to glossopharyngeal ganglion +synonym: "epibranchial placode 2" EXACT [EHDAA2:0004207] +synonym: "glossopharyngeal epibranchial placode" EXACT [XAO:0004212] +synonym: "glossopharyngeal IX placode" EXACT [ISBN:0471888893] +synonym: "glossopharyngeal placode" EXACT [ISBN:0471888893, ZFA:0001296] +xref: EHDAA2:0004207 +xref: TAO:0001296 +xref: XAO:0004212 +xref: ZFA:0001296 +is_a: UBERON:0003078 {source="ZFA"} ! epibranchial placode + +[Term] +id: UBERON:0009126 +name: nodosal placode +def: "Caudalmost epibranchial placode. Associated with 3rd branchial cleft." [NCBIBook:NBK53175] +comment: Taxonomic equivalence to EHDAA2 class made on basis of shared development: Gives rise to inferior vagus ganglion. Note that ZFA has 4 vagal placodes +synonym: "epibranchial placode 3" EXACT [EHDAA2:0004208] +synonym: "nodose placode" EXACT [XAO:0004213] +synonym: "nodose placodes" EXACT PLURAL [XAO:0004213] +synonym: "vagal epibranchial placode" EXACT [XAO:0004213] +synonym: "vagal epibranchial placodes" EXACT PLURAL [XAO:0004213] +synonym: "vagal placode" RELATED [ISBN:0471888893] +synonym: "vagal X placode" RELATED [ISBN:0471888893] +xref: EHDAA2:0004208 +xref: XAO:0004213 +is_a: UBERON:0003078 {source="NCBIBook:NBK53175"} ! epibranchial placode + +[Term] +id: UBERON:0009127 +name: epibranchial ganglion +def: "Cranial ganglion which develops from an epibranchial placode." [http://www.ncbi.nlm.nih.gov/pubmed/20133851, ZFIN:curator] +comment: Epibranchial ganglia orchestrate the development of the cranial neurogenic crest +synonym: "epibranchial ganglia" EXACT PLURAL [ZFA:0001555] +xref: TAO:0001555 +xref: ZFA:0001555 +is_a: UBERON:0001714 {source="ZFA"} ! cranial ganglion +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0001714 ! cranial ganglion +intersection_of: develops_from UBERON:0003078 ! epibranchial placode +relationship: develops_from UBERON:0003078 {source="NCBIBook:NBK53175"} ! epibranchial placode + +[Term] +id: UBERON:0009128 +name: lateral line placode +def: "An ectodermal placode that will develop into the components of the lateral line system" [http://orcid.org/0000-0002-6601-2165] +synonym: "lateral line placodes" RELATED PLURAL [XAO:0000440] +xref: AAO:0010718 +xref: XAO:0000440 +is_a: UBERON:0003067 {source="ISBN:0471888893"} ! dorsolateral placode +is_a: UBERON:0006598 ! presumptive structure +intersection_of: UBERON:0005085 ! ectodermal placode +intersection_of: has_potential_to_develop_into UBERON:0002540 ! lateral line system +relationship: has_potential_to_develop_into UBERON:0002540 ! lateral line system + +[Term] +id: UBERON:0009129 +name: right atrium endocardium +def: "Endocardium that is part of the right atrium." [http://orcid.org/0000-0002-6601-2165] +synonym: "endocardium of right atrium" EXACT [FMA:7281] +synonym: "right atrial endocardium" EXACT [FMA:7281] +synonym: "right atrium endocardial tissue" RELATED [VHOG:0001228] +xref: EHDAA2:0000274 +xref: FMA:7281 +xref: http://www.snomedbrowser.com/Codes/Details/3194006 +xref: NCIT:C102339 +xref: VHOG:0001228 +is_a: UBERON:0000487 ! simple squamous epithelium +is_a: UBERON:0002166 ! endocardium of atrium +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0012275 ! meso-epithelium +intersection_of: UBERON:0002165 ! endocardium +intersection_of: part_of UBERON:0002078 ! right cardiac atrium +relationship: develops_from UBERON:0005092 {source="EHDAA2"} ! right horn of sinus venosus +relationship: part_of UBERON:0002078 ! right cardiac atrium +relationship: part_of UBERON:0006218 {source="EHDAA2"} ! common atrial chamber + +[Term] +id: UBERON:0009130 +name: dorsal meso-duodenum +xref: http://www.snomedbrowser.com/Codes/Details/361433003 +xref: RETIRED_EHDAA2:0000411 +is_a: UBERON:0002050 {source="EHDAA2"} ! embryonic structure +relationship: part_of UBERON:0005712 {source="EHDAA2"} ! midgut duodenum mesentery + +[Term] +id: UBERON:0009131 +name: obsolete midbrain vesicle +comment: Obsoleted as the meaning of the class was unclear in earlier versions of EHDAA2 +is_obsolete: true +consider: EHDAA2:0001103 +consider: SCTID:361481005 + +[Term] +id: UBERON:0009132 +name: peroneus +def: "One of a group of three muscles fibularis (peronæus) longus, brevis, and tertius originating on the fibula and inserting on the metatarsals" [http://en.wikipedia.org/wiki/Fibularis_muscles] +subset: pheno_slim +synonym: "fibularis" EXACT [] +synonym: "fibularis muscle" EXACT [] +synonym: "peroneal muscle" EXACT [] +synonym: "peroneal muscle group" EXACT [] +synonym: "peroneal muscles" EXACT [] +synonym: "peroneus muscle" EXACT [] +synonym: "peronæus muscle" EXACT [] +xref: EHDAA2:0001450 +xref: EHDAA:8297 +xref: EMAPA:36251 +xref: Fibularis:muscles +xref: http://www.snomedbrowser.com/Codes/Details/181694005 +is_a: UBERON:0004256 ! hindlimb zeugopod muscle +relationship: has_muscle_insertion UBERON:0001448 {source="wikipedia"} ! metatarsal bone +relationship: has_muscle_origin UBERON:0001446 {source="wikipedia"} ! fibula + +[Term] +id: UBERON:0009133 +name: pleuroperitoneal membrane +alt_id: UBERON:0009146 +def: "A fold of tissue which extends into the peritoneal cavity of the developing embryo and participates in the separation of the pleural and peritoneal cavities." [http://en.wikipedia.org/wiki/Pleuroperitoneal, http://medical-dictionary.thefreedictionary.com/pleuroperitoneal+membrane] +synonym: "pleuroperitoneal fold" EXACT [VHOG:0000757] +synonym: "pleuroperitoneal membranes" EXACT PLURAL [EHDAA2:0001483] +xref: EHDAA2:0001483 +xref: EMAPA:17709 +xref: http://en.wikipedia.org/wiki/Pleuroperitoneal +xref: http://linkedlifedata.com/resource/umls/id/C1283968 +xref: http://www.snomedbrowser.com/Codes/Details/361429005 +xref: NCIT:C34256 +xref: UMLS:C1283968 {source="ncithesaurus:Pleuroperitoneal_Membrane"} +xref: VHOG:0000757 +is_a: UBERON:0002050 {source="EHDAA2"} ! embryonic structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: adjacent_to UBERON:0001179 ! peritoneal cavity +relationship: adjacent_to UBERON:0002402 ! pleural cavity + +[Term] +id: UBERON:0009138 +name: right common cardinal vein +synonym: "common cardinal vein right" EXACT [EHDAA2:0004535] +xref: EHDAA2:0004535 +xref: FMA:70310 +xref: http://www.snomedbrowser.com/Codes/Details/361507009 +is_a: UBERON:0002064 {source="FMA"} ! common cardinal vein + +[Term] +id: UBERON:0009139 +name: right posterior cardinal vein +alt_id: UBERON:0013123 +def: "A posterior cardinal vein that is in_the_right_side_of a multicellular organism." [OBOL:automatic] +synonym: "posterior cardinal vein right" EXACT [EHDAA2:0004536] +synonym: "right postcardinal vein" EXACT [FMA:70315] +xref: EHDAA2:0004536 +xref: FMA:70315 +xref: http://www.snomedbrowser.com/Codes/Details/361505001 +is_a: UBERON:0002065 ! posterior cardinal vein +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0002065 ! posterior cardinal vein +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: in_right_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0009140 +name: right subcardinal vein +def: "A subcardinal vein that is in_the_right_side_of a multicellular organism." [OBOL:automatic] +synonym: "subcardinal vein right" EXACT [EHDAA2:0004538] +xref: EHDAA2:0004538 +xref: http://www.snomedbrowser.com/Codes/Details/361452009 +is_a: UBERON:0006296 ! subcardinal vein +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0006296 ! subcardinal vein +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: in_right_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0009141 +name: craniocervical region vein +def: "A vein that is part of a craniocervical region." [OBOL:automatic] +synonym: "craniocervical vein" EXACT [] +synonym: "head and neck veins" EXACT [EHDAA2:0004542] +synonym: "vein of head and neck" EXACT [] +xref: EHDAA2:0004542 +xref: http://www.snomedbrowser.com/Codes/Details/32945007 +is_a: UBERON:0013140 ! systemic vein +intersection_of: UBERON:0001638 ! vein +intersection_of: part_of UBERON:0007811 ! craniocervical region +relationship: part_of UBERON:0007811 ! craniocervical region + +[Term] +id: UBERON:0009142 +name: entire embryonic mesenchyme +alt_id: UBERON:0003313 +def: "Sum total of mesenchyme in the embryo." [https://github.com/obophenotype/human-developmental-anatomy-ontology/issues/7] +xref: EHDAA2:0001113 +xref: EHDAA:177 +xref: EMAPA:16097 +is_a: UBERON:0000477 ! anatomical cluster +relationship: composed_primarily_of UBERON:0003104 ! mesenchyme +relationship: has_developmental_contribution_from UBERON:0000926 {source="EHDAA2"} ! mesoderm +relationship: part_of UBERON:0000922 ! embryo + +[Term] +id: UBERON:0009143 +name: obsolete developing esophageal region +synonym: "oesophageal region" BROAD [EMAPA:16700] +synonym: "oesophageal region" EXACT [RETIRED_EHDAA2:0000654] +is_obsolete: true +consider: UBERON:0001043 + +[Term] +id: UBERON:0009145 +name: pharyngeal region of foregut +synonym: "pharyngeal region" EXACT [EMAPA:16549] +xref: EMAPA:16549 +xref: RETIRED_EHDAA2:0001454 +is_a: UBERON:0005423 ! developing anatomical structure +relationship: part_of UBERON:0001041 {source="EHDAA2"} ! foregut + +[Term] +id: UBERON:0009149 +name: foramen primum +def: "opening in the septum primum between the two atria of the embryonic heart[TMD]." [http://en.wikipedia.org/wiki/Primary_interatrial_foramen, http://medical-dictionary.thefreedictionary.com/foramen+primum] +synonym: "interatrial foramen primum" EXACT [http://en.wikipedia.org/wiki/Primary_interatrial_foramen] +synonym: "ostium primum" EXACT [http://medical-dictionary.thefreedictionary.com/foramen+primum] +synonym: "primary interatrial foramen" EXACT [http://en.wikipedia.org/wiki/Primary_interatrial_foramen] +xref: EHDAA2:0001826 +xref: EMAPA:17012 +xref: http://en.wikipedia.org/wiki/Primary_interatrial_foramen +xref: http://linkedlifedata.com/resource/umls/id/C1517292 +xref: http://www.snomedbrowser.com/Codes/Details/308852002 +xref: NCIT:C34178 +xref: UMLS:C1517292 {source="ncithesaurus:Foramen_Primum"} +xref: VHOG:0001470 +is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0004111 ! anatomical conduit +intersection_of: part_of UBERON:0004154 ! atrial septum primum +relationship: part_of UBERON:0004154 ! atrial septum primum + +[Term] +id: UBERON:0009191 +name: sphenoid bone pre-cartilage condensation +def: "A sphenoid endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +xref: EHDAA2:0003446 +xref: EMAPA:18015 +is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure +is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015060 ! sphenoid endochondral element +intersection_of: UBERON:0015060 ! sphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0001703 {source="EHDAA2"} ! neurocranium +relationship: part_of UBERON:0002241 {source="EHDAA2"} ! chondrocranium + +[Term] +id: UBERON:0009192 +name: basisphenoid pre-cartilage condensation +synonym: "basi-sphenoid pre-cartilage condensation" EXACT [EHDAA2:0003447] +xref: EHDAA2:0003447 +xref: EMAPA:18013 +is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation +is_a: UBERON:0006904 ! head mesenchyme from mesoderm +is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +relationship: part_of UBERON:0002241 {source="EHDAA2"} ! chondrocranium + +[Term] +id: UBERON:0009193 +name: sphenoid cartilage element +def: "A sphenoid endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +synonym: "sphenoid bone cartilage condensation" EXACT [EHDAA2:0001888] +xref: EHDAA2:0001888 +is_a: UBERON:0003932 ! cartilage element of chondrocranium +is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015060 ! sphenoid endochondral element +intersection_of: UBERON:0015060 ! sphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0009191 ! sphenoid bone pre-cartilage condensation + +[Term] +id: UBERON:0009194 +name: basisphenoid cartilage condenstion +synonym: "basisphenoid cartilage condensation" EXACT [VHOG:0001338] +xref: EHDAA2:0000166 +xref: EMAPA:18338 +xref: VHOG:0001338 +is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation +is_a: UBERON:0006904 ! head mesenchyme from mesoderm +is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0009891 ! facial mesenchyme +relationship: develops_from UBERON:0009192 {source="EHDAA2"} ! basisphenoid pre-cartilage condensation +relationship: part_of UBERON:0009193 {source="EHDAA2"} ! sphenoid cartilage element + +[Term] +id: UBERON:0009195 +name: anal membrane +def: "The dorsal part of the cloacal membrane following its partition by the urorectal septum." [ncithesaurus:Anal_Membrane] +comment: During the 7th week the urorectal septum divides the cloacal membrane into a urogenital membrane (ventrally) and an anal membrane (dorsally) [http://www.embryology.ch/anglais/ugenital/genitexterne01.html] +xref: EHDAA2:0004018 +xref: http://linkedlifedata.com/resource/umls/id/C1288337 +xref: http://www.snomedbrowser.com/Codes/Details/344130000 +xref: NCIT:C34105 +xref: UMLS:C1288337 {source="ncithesaurus:Anal_Membrane"} +is_a: UBERON:0002050 ! embryonic structure +relationship: develops_from UBERON:0006217 {source="EHDAA2"} ! cloacal membrane +relationship: part_of UBERON:0001353 {source="EHDAA2"} ! anal region + +[Term] +id: UBERON:0009196 +name: indifferent external genitalia +subset: organ_slim +xref: EHDAA2:0004021 +is_a: UBERON:0004176 {source="cjm"} ! external genitalia +relationship: part_of UBERON:0000922 ! embryo + +[Term] +id: UBERON:0009197 +name: basioccipital pre-cartilage condensation +def: "A basioccipital endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +xref: EHDAA2:0000165 +xref: EHDAA:6033 +xref: EMAPA:18012 +xref: VHOG:0000959 +is_a: UBERON:0005253 ! head mesenchyme +is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation +is_a: UBERON:0015048 ! basioccipital endochondral element +intersection_of: UBERON:0015048 ! basioccipital endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: has_potential_to_develop_into UBERON:0001692 {source="EHDAA2"} ! basioccipital bone + +[Term] +id: UBERON:0009198 +name: craniofacial suture +def: "Any suture between cranial and/or facial bones." [GO:0097094] +synonym: "articulation of skull bones" RELATED [OBOL:automatic] +synonym: "joint of the skull bones" EXACT [OBOL:automatic] +is_a: UBERON:0002209 ! fibrous joint +intersection_of: UBERON:0002209 ! fibrous joint +intersection_of: connects UBERON:0003457 {minCardinality="2"} ! head bone +relationship: connects UBERON:0003457 ! head bone +relationship: part_of UBERON:0010323 ! cranial skeletal system + +[Term] +id: UBERON:0009199 +name: facial suture +def: "Any suture between facial bones." [GO:0097096] +is_a: UBERON:0009198 ! craniofacial suture +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0009198 ! craniofacial suture +intersection_of: connects UBERON:0003462 {minCardinality="2"} ! facial bone +relationship: connects UBERON:0003462 {notes="between two adjacent facial bones"} ! facial bone +relationship: part_of UBERON:0011156 ! facial skeleton + +[Term] +id: UBERON:0009200 +name: limb epidermis +def: "The limb epidermis is the outer epithelial layer of the limb, it is a complex stratified squamous epithelium." [GOC:dph, GOC:sdb_2009, GOC:tb] +xref: EMAPA:32728 +is_a: UBERON:0001003 ! skin epidermis +is_a: UBERON:3000981 ! limb external integument structure +intersection_of: UBERON:0001003 ! skin epidermis +intersection_of: part_of UBERON:0002101 ! limb + +[Term] +id: UBERON:0009201 +name: nephric duct +def: "A nephric duct is a tube that drains a primitive kidney[GO]." [GO:0072176] +comment: pronephric duct or mesonephric duct +xref: EMAPA:16577 +xref: Wolffian:duct +is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube +is_a: UBERON:0004819 ! kidney epithelium +is_a: UBERON:0006553 ! renal duct +is_a: UBERON:0006555 ! excretory tube +union_of: UBERON:0003060 ! pronephric duct +union_of: UBERON:0003074 ! mesonephric duct + +[Term] +id: UBERON:0009202 +name: vasa recta descending limb +xref: KUPO:0001002 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0004726 {source="KUPO"} ! vasa recta + +[Term] +id: UBERON:0009203 +name: internasal suture +def: "A suture joining the nasal bones." [http://en.wikipedia.org/wiki/Internasal_suture] +synonym: "inter-nasal suture" EXACT [] +synonym: "internasal suture of skull" EXACT [FMA:52959] +synonym: "nasal suture" BROAD [GO:0097097] +synonym: "sutura internasalis" EXACT [http://en.wikipedia.org/wiki/Internasal_suture] +synonym: "sutura internasalis" RELATED LATIN [http://en.wikipedia.org/wiki/Internasal_suture] +xref: FMA:52959 +xref: http://www.snomedbrowser.com/Codes/Details/368990004 +xref: Internasal:suture +is_a: UBERON:0011160 ! nasal suture +intersection_of: UBERON:0009199 ! facial suture +intersection_of: connects UBERON:0001681 {minCardinality="2", maxCardinality="2"} ! nasal bone + +[Term] +id: UBERON:0009204 +name: medial nasal process mesenchyme +def: "Mesenchyme that is part of a medial nasal prominence." [OBOL:automatic] +xref: EHDAA2:0001077 +xref: EMAPA:16810 +xref: FMA:312659 +is_a: UBERON:0009501 ! mesenchyme of fronto-nasal process +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0004068 ! medial nasal prominence +disjoint_from: UBERON:0009205 {source="lexical"} ! lateral nasal process mesenchyme +relationship: part_of UBERON:0004068 {source="EHDAA2"} ! medial nasal prominence + +[Term] +id: UBERON:0009205 +name: lateral nasal process mesenchyme +def: "Mesenchyme that is part of a lateral nasal prominence." [OBOL:automatic] +synonym: "mesenchyme of latero-nasal process" EXACT [EMAPA:16807] +xref: EHDAA2:0000917 +xref: EMAPA:16807 +xref: FMA:312665 +is_a: UBERON:0009501 ! mesenchyme of fronto-nasal process +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0004067 ! lateral nasal prominence +relationship: part_of UBERON:0004067 ! lateral nasal prominence + +[Term] +id: UBERON:0009206 +name: lateral nasal process surface ectoderm +def: "An ectoderm that is part of a lateral nasal prominence." [OBOL:automatic] +synonym: "ectoderm of latero-nasal process" EXACT [EMAPA:16806] +xref: EHDAA2:0000918 +xref: EMAPA:16806 +is_a: UBERON:0000924 ! ectoderm +is_a: UBERON:0014702 ! frontonasal process epithelium +intersection_of: UBERON:0000924 ! ectoderm +intersection_of: part_of UBERON:0004067 ! lateral nasal prominence +relationship: part_of UBERON:0000076 {source="EHDAA2"} ! external ectoderm +relationship: part_of UBERON:0004067 ! lateral nasal prominence + +[Term] +id: UBERON:0009207 +name: geschmacksstreifen +def: "Area on the rostral portion of the soft palate rich in tastebuds (Miller and Spangler 1982)." [http://www.ncbi.nlm.nih.gov/pubmed/19295142] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0001716 ! secondary palate + +[Term] +id: UBERON:0009210 +name: pharyngeal membrane +def: "A thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the pharyngeal clefts in a developing embryo." [http://musom.marshall.edu/anatomy/grosshom/z_devbranc.html] +comment: each membrane is initially composed of an inner layer formed by the endodermal lining of a branchial pouch and an outer layer formed by the ectodermal lining of the branchial groove; later, these two layers become separated by a thin layer of mesoderm; only the first branchial membrane contributes to the formation of an adult structure, i.e. the tympanic membrane (aka eardrum); the second, third, and fourth membranes are obliterated[MP] +subset: pheno_slim +synonym: "branchial arch membrane" EXACT [EMAPA:32749] +synonym: "branchial membrane" EXACT [] +synonym: "pharyngeal membrane" EXACT [] +xref: EMAPA:32749 +xref: FMA:295758 +xref: http://linkedlifedata.com/resource/umls/id/C1519040 +xref: NCIT:C34251 +xref: UMLS:C1519040 {source="ncithesaurus:Pharyngeal_Membrane"} +is_a: UBERON:0002050 ! embryonic structure +relationship: has_part UBERON:0000924 ! ectoderm +relationship: has_part UBERON:0000925 ! endoderm +relationship: part_of UBERON:0002539 {source="EMAPA"} ! pharyngeal arch + +[Term] +id: UBERON:0009213 +name: pharyngeal membrane of 1st arch +def: "A pharyngeal membrane that separates the first pharyngeal cleft from the first pharyngeal pouch." [http://orcid.org/0000-0002-6601-2165] +synonym: "1st branchial membrane" EXACT [EMAPA:16992] +synonym: "1st pharyngeal membrane" EXACT [VHOG:0001427] +synonym: "future tympanic membrane" EXACT [EMAPA:17281] +synonym: "tympanic membrane primordium" EXACT [ISBN:1416037055] +xref: EHDAA:3788 +xref: EMAPA:16121 +xref: EMAPA:16992 +xref: EMAPA:17281 +xref: VHOG:0001427 +is_a: UBERON:0009210 ! pharyngeal membrane +relationship: part_of UBERON:0004362 {source="EMAPA"} ! pharyngeal arch 1 + +[Term] +id: UBERON:0009215 +name: pharyngeal membrane of 2nd arch +def: "A pharyngeal membrane that separates the second pharyngeal cleft from the second pharyngeal pouch." [http://orcid.org/0000-0002-6601-2165] +synonym: "2nd pharyngeal membrane" EXACT [VHOG:0000877] +xref: EMAPA:16273 +xref: VHOG:0000877 +is_a: UBERON:0009210 ! pharyngeal membrane +relationship: part_of UBERON:0003066 {source="EMAPA"} ! pharyngeal arch 2 + +[Term] +id: UBERON:0009216 +name: pharyngeal membrane of 3rd arch +def: "A pharyngeal membrane that separates the third pharyngeal cleft from the third pharyngeal pouch." [http://orcid.org/0000-0002-6601-2165] +synonym: "3rd pharyngeal membrane" EXACT [VHOG:0000876] +xref: EMAPA:16583 +xref: VHOG:0000876 +is_a: UBERON:0009210 ! pharyngeal membrane +relationship: part_of UBERON:0003114 {source="EMAPA"} ! pharyngeal arch 3 + +[Term] +id: UBERON:0009217 +name: pharyngeal membrane of 4th arch +def: "A pharyngeal membrane that separates the fourth pharyngeal cleft from the fourth pharyngeal pouch." [http://orcid.org/0000-0002-6601-2165] +synonym: "4th pharyngeal membrane" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: EMAPA:16763 +is_a: UBERON:0009210 ! pharyngeal membrane +relationship: part_of UBERON:0003115 {source="EMAPA"} ! pharyngeal arch 4 + +[Term] +id: UBERON:0009291 +name: cartilaginous vertebral centrum +def: "Cartilaginous form of a vertebral centrum, a skeletal element that functionally replaces the notochord[VSAP,modified]." [http://orcid.org/0000-0002-6601-2165, VSAO:0000183, VSAO:curator] +comment: cartilaginous centrum of vertebra[PMID:11746457] +synonym: "cartilaginous centrum of vertebra" EXACT [] +synonym: "postcaudal cartilaginous centrum" NARROW [http://www.ncbi.nlm.nih.gov/pubmed/11746457] +xref: http://www.snomedbrowser.com/Codes/Details/317278007 +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0016491 ! vertebral centrum element +intersection_of: UBERON:0016491 ! vertebral centrum element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: part_of UBERON:0011094 ! vertebra cartilage element + +[Term] +id: UBERON:0009292 +name: embryonic nasal process +synonym: "nasal placode" RELATED [] +xref: EHDAA2:0000581 +xref: EHDAA:4776 +xref: EMAPA:16680 +xref: FMA:293971 +xref: http://www.snomedbrowser.com/Codes/Details/308881001 +is_a: UBERON:0012314 ! embryonic facial prominence + +[Term] +id: UBERON:0009293 +name: embryonic frontal process +synonym: "frontal process" EXACT [VHOG:0001323] +xref: EHDAA:4780 +xref: EMAPA:16802 +xref: FMA:313738 +xref: http://www.snomedbrowser.com/Codes/Details/346265009 +xref: VHOG:0001323 +is_a: UBERON:0012314 ! embryonic facial prominence +relationship: part_of UBERON:0004066 {source="EMAPA"} ! frontonasal prominence + +[Term] +id: UBERON:0009468 +name: basiotic bone +def: "A small bone in the fetus between the basilar process and the basisphenoid." [http://medical-dictionary.thefreedictionary.com/basiotic+bone] +synonym: "basiotic" EXACT [] +xref: FMA:321631 +xref: http://www.snomedbrowser.com/Codes/Details/95946002 +is_a: UBERON:0011164 ! neurocranium bone +relationship: part_of UBERON:0000922 ! embryo + +[Term] +id: UBERON:0009470 +name: postsphenoidal bone +def: "The posterior portion of the sphenoid bone developed in five separate parts consisting of a central basisphenoid, the two alisphenoids, and the two medial pterygoid laminae." [http://en.wikipedia.org/wiki/Ossification_of_sphenoid#Postsphenoid, http://www.merriam-webster.com/dictionary/postsphenoid] +xref: FMA:321633 +xref: http://www.snomedbrowser.com/Codes/Details/95950009 +xref: Postsphenoid +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0011164 {source="MA"} ! neurocranium bone +relationship: part_of UBERON:0001677 {source="cjm"} ! sphenoid bone + +[Term] +id: UBERON:0009471 +name: dorsum of tongue +def: "The superior surface of the tongue divided by the sulcus terminalis into an anterior two-thirds, the presulcal part (pars presulcalis). and a posterior one-third, the postsulcal part (pars postsulcalis)." [http://www.drugs.com/dict/dorsum-of-tongue.html] +synonym: "dorsal tongue" EXACT [FMA:54651] +synonym: "dorsum linguae" EXACT [http://www.drugs.com/dict/dorsum-of-tongue.html] +synonym: "tongue dorsum" EXACT [FMA:54651] +xref: FMA:54651 +xref: http://linkedlifedata.com/resource/umls/id/C0226952 +xref: http://www.snomedbrowser.com/Codes/Details/66938003 +xref: NCIT:C32482 +xref: UMLS:C0226952 {source="ncithesaurus:Dorsum_of_the_Tongue"} +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0001723 {source="FMA"} ! tongue + +[Term] +id: UBERON:0009472 +name: axilla +def: "The axilla is the area directly under the joint where the forelimb connects to the shoulder." [http://en.wikipedia.org/wiki/Axilla] +subset: efo_slim +subset: pheno_slim +synonym: "arm pit" EXACT [http://en.wikipedia.org/wiki/Axilla] +synonym: "armpit" EXACT [http://en.wikipedia.org/wiki/Axilla] +synonym: "armpits" RELATED [http://en.wikipedia.org/wiki/Axilla] +synonym: "axilla" RELATED LATIN [http://en.wikipedia.org/wiki/Axilla] +synonym: "axillae" RELATED [http://en.wikipedia.org/wiki/Axilla] +synonym: "axillary region" EXACT [FMA:24864] +synonym: "axillary region" RELATED [http://en.wikipedia.org/wiki/Axilla] +synonym: "oxter" RELATED [http://en.wikipedia.org/wiki/Axilla] +synonym: "regio axillaris" EXACT LATIN [FMA:TA] +synonym: "underarm" RELATED [http://en.wikipedia.org/wiki/Axilla] +xref: CALOHA:TS-2208 +xref: EFO:0001395 +xref: FMA:24864 +xref: galen:Axilla +xref: http://en.wikipedia.org/wiki/Axilla +xref: http://linkedlifedata.com/resource/umls/id/C0004454 +xref: http://www.snomedbrowser.com/Codes/Details/362732006 +xref: MESH:D001365 +xref: NCIT:C12674 +xref: UMLS:C0004454 {source="ncithesaurus:Axilla"} +is_a: UBERON:0034929 ! external soft tissue zone +relationship: part_of UBERON:0001421 {source="FMA"} ! pectoral girdle region + +[Term] +id: UBERON:0009473 +name: parapodium +def: "either of a pair of fleshy lateral processes borne by most segments of a polychaete worm." [http://en.wikipedia.org/wiki/Parapodium, http://www.merriam-webster.com/dictionary/parapodium?show=0&t=1314575672] +synonym: "paradpod" EXACT [] +synonym: "paradpodia" RELATED PLURAL [] +synonym: "polychaete paradpodium" EXACT [] +xref: http://en.wikipedia.org/wiki/Parapodium +is_a: UBERON:0000026 {source="cjm"} ! appendage +relationship: part_of UBERON:0000914 ! organismal segment + +[Term] +id: UBERON:0009474 +name: ascidian ampulla +synonym: "ampulla" BROAD [] +xref: NCIT:C93230 +is_a: UBERON:0000026 ! appendage + +[Term] +id: UBERON:0009475 +name: ampullar siphon +is_a: UBERON:0000026 ! appendage +relationship: part_of UBERON:0009474 ! ascidian ampulla + +[Term] +id: UBERON:0009476 +name: madreporite +def: "The madreporite is an opening used to filter water into the water vascular system of echinoderms. It is visible as a small red or yellow button-like structure, looking like a small wart, on the aboral surface of the central disk of a sea star. Close up, it is visibly structured, resembling a 'madrepore' colony. From this, it derives its name. The water vascular system of the sea star consists of a series of seawater-filled ducts that function in locomotion and feeding and respiration. Its main parts are the madreporite, the stone canal, the ring canal, the radial canals, the lateral canals, and the tube feet. The sieve-like madreporite allows entry of seawater into the stone canal, which connects to the ring canal around the mouth. Five or more radial canals extend from the ring canal, one in each arm above the ambulacral groove. From the radial canals extend many lateral canals, each of which leads to a tube foot. Each tube foot is a closed cylinder with muscular walls, having a sucker at the outer end and a bulb-like ampulla at its inner end within the body cavity." [http://en.wikipedia.org/wiki/Madreporite] +xref: http://en.wikipedia.org/wiki/Madreporite +is_a: UBERON:0003978 ! valve +relationship: part_of UBERON:0008251 {source="BTO"} ! water vascular system +relationship: part_of UBERON:0008259 ! aboral subdivision of organism + +[Term] +id: UBERON:0009477 +name: associated mesenchyme of otic placode +def: "Mesenchyme that is part of a otic placode." [OBOL:automatic] +subset: emapa_ehdaa2 +xref: EHDAA2:0001340 +xref: EMAPA:16196 +is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0003069 ! otic placode +relationship: part_of UBERON:0003069 ! otic placode + +[Term] +id: UBERON:0009478 +name: associated mesenchyme of midgut +def: "Mesenchyme that is part of a developing midgut." [OBOL:automatic] +subset: emapa_ehdaa2 +synonym: "early midgut associated mesenchyme" EXACT [EHDAA2:0001186] +xref: EHDAA2:0001186 +xref: EMAPA:16256 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue +relationship: develops_from UBERON:0010378 {source="EHDAA2"} ! mesenchyme from splanchnopleure +relationship: part_of UBERON:0001045 ! midgut + +[Term] +id: UBERON:0009479 +name: ectoderm of buccopharyngeal membrane +def: "An ectoderm that is part of a buccopharyngeal membrane." [OBOL:automatic] +subset: emapa_ehdaa2 +xref: EHDAA2:0000190 +xref: EMAPA:16260 +is_a: UBERON:0000924 ! ectoderm +intersection_of: UBERON:0000924 ! ectoderm +intersection_of: part_of UBERON:0006211 ! buccopharyngeal membrane +relationship: part_of UBERON:0006211 ! buccopharyngeal membrane + +[Term] +id: UBERON:0009480 +name: endoderm of buccopharyngeal membrane +def: "An endoderm that is part of a buccopharyngeal membrane." [OBOL:automatic] +subset: emapa_ehdaa2 +xref: EHDAA2:0000191 +xref: EMAPA:16261 +is_a: UBERON:0000925 ! endoderm +intersection_of: UBERON:0000925 ! endoderm +intersection_of: part_of UBERON:0006211 ! buccopharyngeal membrane +relationship: part_of UBERON:0006211 ! buccopharyngeal membrane + +[Term] +id: UBERON:0009481 +name: cavity of pericardio-peritoneal canal +def: "A tube lumen that is part of a pericardio-peritoneal canal." [OBOL:automatic] +subset: emapa_ehdaa2 +synonym: "cavity of the pericardio-peritoneal canal" EXACT [VHOG:0000564] +xref: EHDAA2:0001441 +xref: EMAPA:16283 +xref: VHOG:0000564 +is_a: UBERON:0005082 ! tube lumen +intersection_of: UBERON:0005082 ! tube lumen +intersection_of: part_of UBERON:0006275 ! pericardio-peritoneal canal +relationship: part_of UBERON:0006275 ! pericardio-peritoneal canal + +[Term] +id: UBERON:0009482 +name: associated mesenchyme of foregut-midgut junction +def: "Mesenchyme that is part of a foregut-midgut junction." [OBOL:automatic] +subset: emapa_ehdaa2 +xref: EHDAA2:0000570 +xref: EMAPA:16364 +is_a: UBERON:0003104 ! mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0006235 ! foregut-midgut junction +relationship: part_of UBERON:0006235 ! foregut-midgut junction + +[Term] +id: UBERON:0009483 +name: mesentery of foregut-midgut junction +def: "A mesentery that is part of a foregut-midgut junction." [OBOL:automatic] +subset: emapa_ehdaa2 +synonym: "foregut-midgut junction mesentery" EXACT [VHOG:0000430] +xref: EHDAA2:0000575 +xref: EMAPA:16365 +xref: VHOG:0000430 +is_a: UBERON:0002095 ! mesentery +intersection_of: UBERON:0002095 ! mesentery +intersection_of: part_of UBERON:0006235 ! foregut-midgut junction +relationship: part_of UBERON:0006235 ! foregut-midgut junction + +[Term] +id: UBERON:0009484 +name: dorsal mesentery of mesentery of foregut-midgut junction +subset: emapa_ehdaa2 +xref: EHDAA2:0000571 +xref: EMAPA:16366 +is_a: UBERON:0009483 ! mesentery of foregut-midgut junction + +[Term] +id: UBERON:0009494 +name: pharyngeal arch mesenchymal region +def: "A portion of mesenchymal tissue associated with an individual pharyngeal arch." [https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "branchial arch mesenchyme" EXACT [MP:0011262] +synonym: "pharyngeal arch mesenchyme" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: EMAPA:32755 +xref: FMA:295694 +is_a: UBERON:0005253 ! head mesenchyme +is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0002539 ! pharyngeal arch +relationship: has_developmental_contribution_from UBERON:0003099 {source="cjm"} ! cranial neural crest +relationship: part_of UBERON:0002539 ! pharyngeal arch +relationship: part_of UBERON:0010046 ! entire pharyngeal arch associated mesenchyme + +[Term] +id: UBERON:0009495 +name: extrahepatic part of biliary bud +subset: emapa_ehdaa2 +xref: EHDAA2:0000172 +xref: EMAPA:16562 +is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0007499 ! epithelial sac +relationship: develops_from UBERON:0004912 {source="EHDAA2"} ! biliary bud + +[Term] +id: UBERON:0009496 +name: intrahepatic part of biliary bud +subset: emapa_ehdaa2 +xref: EHDAA2:0000173 +xref: EMAPA:16563 +is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0007499 ! epithelial sac +relationship: develops_from UBERON:0004912 {source="EHDAA2"} ! biliary bud + +[Term] +id: UBERON:0009497 +name: epithelium of foregut-midgut junction +def: "An epithelium that is part of a foregut-midgut junction." [OBOL:automatic] +subset: emapa_ehdaa2 +xref: EHDAA2:0000573 +xref: EMAPA:16564 +is_a: UBERON:0000490 ! unilaminar epithelium +is_a: UBERON:0003929 ! digestive tract epithelium +is_a: UBERON:0005911 ! endo-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0006235 ! foregut-midgut junction +relationship: develops_from UBERON:0009550 {source="EHDAA2"} ! endoderm of foregut-midgut junction +relationship: part_of UBERON:0006235 ! foregut-midgut junction + +[Term] +id: UBERON:0009499 +name: parietal of mesothelium of pericardio-peritoneal canal +subset: emapa_ehdaa2 +xref: EHDAA2:0001409 +xref: EMAPA:16590 +is_a: UBERON:0007185 ! pericardio-peritoneal canal mesothelium + +[Term] +id: UBERON:0009500 +name: periotic mesenchyme +def: "Anatomical region that surrounds the otic vesicle." [http://www.ncbi.nlm.nih.gov/pubmed/3794595, XAO:0004474, XAO:curators] +subset: emapa_ehdaa2 +synonym: "otocyst associated mesenchyme" EXACT [EHDAA2:0001343] +synonym: "otocyst mesenchyme" EXACT [EMAPA:16670] +synonym: "periotic region" RELATED [XAO:0004474] +xref: EHDAA2:0001343 +xref: EMAPA:16670 +xref: XAO:0004474 +is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: surrounds UBERON:0003051 ! ear vesicle +relationship: develops_from UBERON:0009477 {source="EHDAA2"} ! associated mesenchyme of otic placode +relationship: part_of UBERON:0001444 {source="XAO"} ! subdivision of head +relationship: surrounds UBERON:0003051 ! ear vesicle + +[Term] +id: UBERON:0009501 +name: mesenchyme of fronto-nasal process +def: "The embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the frontonasal region of the head" [MP:0011266] +subset: emapa_ehdaa2 +subset: pheno_slim +synonym: "frontonasal mesenchyme" EXACT [MP:0011266] +synonym: "naso-frontal mesenchyme" EXACT [MP:0011266] +xref: EHDAA2:0004109 +xref: EMAPA:16683 +xref: FMA:295821 +is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0004066 ! frontonasal prominence +relationship: part_of UBERON:0004066 ! frontonasal prominence + +[Term] +id: UBERON:0009502 +name: ventral mesentery of mesentery of foregut-midgut junction +subset: emapa_ehdaa2 +xref: EMAPA:16714 +xref: RETIRED_EHDAA2:0000576 +is_a: UBERON:0009483 ! mesentery of foregut-midgut junction + +[Term] +id: UBERON:0009503 +name: mesenchyme of hindgut +def: "Mesenchyme that is part of a developing hindgut." [OBOL:automatic] +subset: emapa_ehdaa2 +synonym: "hindgut associated mesenchyme" EXACT [EHDAA2:0000780] +xref: EHDAA2:0000780 +xref: EMAPA:16716 +is_a: UBERON:0003104 ! mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001046 ! hindgut +relationship: part_of UBERON:0001046 ! hindgut + +[Term] +id: UBERON:0009504 +name: mesenchyme of main bronchus +def: "Mesenchyme that is part of a developing main bronchus." [OBOL:automatic] +subset: emapa_ehdaa2 +synonym: "main bronchus associated mesenchyme" EXACT [EHDAA2:0001045] +synonym: "primary bronchus mesenchyme" RELATED [EMAPA:16850] +synonym: "principal bronchus mesenchyme" RELATED [EMAPA:16850] +xref: EHDAA2:0001045 +xref: EMAPA:16850 +is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0002182 ! main bronchus +relationship: part_of UBERON:0002182 ! main bronchus + +[Term] +id: UBERON:0009505 +name: mesenchyme of trachea +def: "Mesenchyme that is part of a developing trachea." [OBOL:automatic] +subset: emapa_ehdaa2 +synonym: "trachea associated mesenchyme" EXACT [EHDAA2:0002067] +xref: EHDAA2:0002067 +xref: EMAPA:16854 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0003126 ! trachea +relationship: develops_from UBERON:0002539 ! pharyngeal arch +relationship: part_of UBERON:0003126 ! trachea + +[Term] +id: UBERON:0009506 +name: mesenchyme of middle ear +def: "Mesenchyme that is part of a developing middle ear." [OBOL:automatic] +subset: emapa_ehdaa2 +synonym: "middle ear associated mesenchyme" EXACT [EHDAA2:0001182] +synonym: "otic mesenchyme" BROAD [] +xref: EHDAA2:0001182 +xref: EMAPA:17001 +is_a: UBERON:0005253 ! head mesenchyme +is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001756 ! middle ear +relationship: has_developmental_contribution_from UBERON:0005689 {source="EHDAA2"} ! 2nd arch mesenchyme +relationship: has_developmental_contribution_from UBERON:0010045 {source="EHDAA2"} ! 1st arch maxillary mesenchyme +relationship: part_of UBERON:0001756 ! middle ear + +[Term] +id: UBERON:0009521 +name: anal membrane endodermal component +def: "An endoderm that is part of a anal region." [OBOL:automatic] +subset: emapa_ehdaa2 +xref: EHDAA2:0004020 +xref: EMAPA:17177 +is_a: UBERON:0000490 ! unilaminar epithelium +is_a: UBERON:0005911 ! endo-epithelium +intersection_of: UBERON:0000490 ! unilaminar epithelium +intersection_of: develops_from UBERON:0000925 ! endoderm +intersection_of: part_of UBERON:0001353 ! anal region +relationship: part_of UBERON:0001353 ! anal region + +[Term] +id: UBERON:0009522 +name: lateral lingual swelling epithelium +def: "An epithelium that is part of a lateral lingual swelling." [OBOL:automatic] +subset: emapa_ehdaa2 +xref: EHDAA2:0000913 +xref: EMAPA:17190 +xref: FMA:313717 +is_a: UBERON:0000490 ! unilaminar epithelium +is_a: UBERON:0003929 ! digestive tract epithelium +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0006757 ! lateral lingual swelling +relationship: part_of UBERON:0006757 ! lateral lingual swelling + +[Term] +id: UBERON:0009523 +name: mesenchyme of handplate +def: "Mesenchyme that is part of a handplate." [OBOL:automatic] +subset: emapa_ehdaa2 +synonym: "hand plate mesenchyme" EXACT [] +synonym: "handplate mesenchyme" EXACT [EHDAA2:0000731] +xref: EHDAA2:0000731 +xref: EMAPA:17248 +xref: EMAPA:17457 +is_a: UBERON:0010377 ! mesenchyme from somatopleure +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0006875 ! embryonic handplate +relationship: develops_from UBERON:0003413 {source="EHDAA2"} ! pectoral appendage bud mesenchyme +relationship: part_of UBERON:0006875 ! embryonic handplate + +[Term] +id: UBERON:0009526 +name: maxillary process mesenchyme +def: "Mesenchyme that is part of a maxillary prominence." [OBOL:automatic] +subset: emapa_ehdaa2 +synonym: "mesenchyme of maxillary process" EXACT [EMAPA:17361] +synonym: "mesenchyme of maxillary prominence" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: EHDAA2:0001071 +xref: EMAPA:17361 +xref: FMA:312691 +is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0005868 ! maxillary prominence +relationship: part_of UBERON:0005868 ! maxillary prominence + +[Term] +id: UBERON:0009536 +name: vascular element of left lung +def: "A vascular plexus that is part of a left lung." [OBOL:automatic] +subset: emapa_ehdaa2 +xref: EHDAA2:0000963 +xref: EMAPA:17660 +is_a: UBERON:0000102 ! lung vasculature +is_a: UBERON:0005629 ! vascular plexus +intersection_of: UBERON:0005629 ! vascular plexus +intersection_of: part_of UBERON:0002168 ! left lung +relationship: part_of UBERON:0002168 ! left lung + +[Term] +id: UBERON:0009537 +name: vascular element of right lung +def: "A vascular plexus that is part of a right lung." [OBOL:automatic] +subset: emapa_ehdaa2 +xref: EHDAA2:0001757 +xref: EMAPA:17668 +is_a: UBERON:0000102 ! lung vasculature +is_a: UBERON:0005629 ! vascular plexus +intersection_of: UBERON:0005629 ! vascular plexus +intersection_of: part_of UBERON:0002167 ! right lung +relationship: part_of UBERON:0002167 ! right lung + +[Term] +id: UBERON:0009538 +name: mesenchyme of sublingual gland primordium +def: "Mesenchyme that is part of a sublingual gland primordium." [OBOL:automatic] +subset: emapa_ehdaa2 +xref: EHDAA2:0001937 +xref: EMAPA:17754 +is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0006297 ! sublingual gland primordium +relationship: develops_from UBERON:0003324 ! mesenchyme of lower jaw +relationship: part_of UBERON:0006297 ! sublingual gland primordium + +[Term] +id: UBERON:0009539 +name: mesenchyme of submandibular gland primordium +def: "Mesenchyme that is part of a submandibular gland primordium." [OBOL:automatic] +subset: emapa_ehdaa2 +synonym: "submaxillary gland primordium mesenchyme" RELATED [EMAPA:17757] +xref: EHDAA2:0001941 +xref: EMAPA:17757 +is_a: UBERON:0003324 ! mesenchyme of lower jaw +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0006298 ! submandibular gland primordium +relationship: part_of UBERON:0006298 ! submandibular gland primordium + +[Term] +id: UBERON:0009548 +name: hepatic sinusoid of left of lobe of liver +def: "A hepatic sinusoid that is part of a left lobe of liver." [OBOL:automatic] +subset: emapa_ehdaa2 +synonym: "left lobe hepatic sinusoids" EXACT [VHOG:0000709] +xref: EHDAA2:0001001 +xref: EMAPA:18309 +xref: VHOG:0000709 +is_a: UBERON:0001281 ! hepatic sinusoid +intersection_of: UBERON:0001281 ! hepatic sinusoid +intersection_of: part_of UBERON:0001115 ! left lobe of liver +relationship: develops_in UBERON:0001115 ! left lobe of liver +relationship: part_of UBERON:0001115 ! left lobe of liver + +[Term] +id: UBERON:0009549 +name: hepatic sinusoid of right of lobe of liver +def: "A hepatic sinusoid that is part of a right lobe of liver." [OBOL:automatic] +subset: emapa_ehdaa2 +synonym: "right lobe hepatic sinusoids" EXACT [VHOG:0000710] +xref: EHDAA2:0001009 +xref: EMAPA:18316 +xref: VHOG:0000710 +is_a: UBERON:0001281 ! hepatic sinusoid +intersection_of: UBERON:0001281 ! hepatic sinusoid +intersection_of: part_of UBERON:0001114 ! right lobe of liver +relationship: develops_in UBERON:0001114 ! right lobe of liver +relationship: part_of UBERON:0001114 ! right lobe of liver + +[Term] +id: UBERON:0009550 +name: endoderm of foregut-midgut junction +def: "An endoderm that is part of a foregut-midgut junction." [OBOL:automatic] +subset: emapa_ehdaa2 +xref: EHDAA2:0000572 +xref: EMAPA:18403 +is_a: UBERON:0000925 ! endoderm +intersection_of: UBERON:0000925 ! endoderm +intersection_of: part_of UBERON:0006235 ! foregut-midgut junction +relationship: part_of UBERON:0006235 ! foregut-midgut junction + +[Term] +id: UBERON:0009551 +name: distal segment of digit +def: "A segment of a digit containing the distal phalanx, and overlapping the distal interphalangeal joint[CJM]. The digit tip is derived from multiple and distinct embryonic origins, and includes the distal bone with associated marrow cavity and haematopoietic cells, ventral (flexor) and dorsal (extensor) tendons, sweat glands with myoepithelial and luminal secreting cells and associated neurons for innervation, dermis with resident melanocytes and dendritic cells, mesenchyme with resident fibroblasts, skin epidermis with hair follicles, a nail organ composed of six specific parts (the root, nail bed, nail plate, eponychium (cuticle), perionychium and hyponychium)." [https://doi.org/10.1038/nature10346] +synonym: "digit tip" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "distal digit segment" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "tip of digit" EXACT [https://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0002529 ! limb segment +relationship: has_part UBERON:0004300 ! distal phalanx +relationship: part_of UBERON:0002544 ! digit + +[Term] +id: UBERON:0009552 +name: distal segment of manual digit +alt_id: UBERON:0004093 +def: "A segment of the manual digit containing the distal phalanx" [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "finger digit tip" EXACT [https://doi.org/10.1038/nature10346] +synonym: "finger distal segment" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "finger tip" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "fingertip" EXACT [HP:0001211] +synonym: "forelimb digit tip" EXACT [https://doi.org/10.1038/nature10346] +synonym: "tip of finger" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/312543003 +xref: OpenCyc:Mx4rvVjpf5wpEbGdrcN5Y29ycA +is_a: UBERON:0005451 ! segment of manus +is_a: UBERON:0009551 ! distal segment of digit +intersection_of: UBERON:0009551 ! distal segment of digit +intersection_of: part_of UBERON:0002389 ! manual digit +relationship: part_of UBERON:0002389 ! manual digit + +[Term] +id: UBERON:0009553 +name: distal segment of pedal digit +def: "A segment of the pedal digit containing the distal phalanx. Note this class represents a digit segment and thus includes tissues in addition to bone." [http://orcid.org/0000-0002-6601-2165] +synonym: "distalmost part of toe" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "hindlimb digit tip" EXACT [https://doi.org/10.1038/nature10346] +synonym: "P3 segment of pedal digit" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "tip of toe" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "toe digit tip" EXACT [https://doi.org/10.1038/nature10346] +synonym: "toe distal segment" EXACT [https://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0005445 ! segment of pes +is_a: UBERON:0009551 ! distal segment of digit +intersection_of: UBERON:0009551 ! distal segment of digit +intersection_of: part_of UBERON:0001466 ! pedal digit +relationship: part_of UBERON:0001466 ! pedal digit + +[Term] +id: UBERON:0009554 +name: obsolete coffin bone +def: "The bottommost bone in the equine leg and is encased by the hoof capsule. The distal phalanx articulates with both the middle phalanx and the distal sesamoid, forming the distal interphalangeal joint" [http://en.wikipedia.org/wiki/Coffin_bone] +comment: Was made obsolete in favor of the more generic grouping +is_obsolete: true +replaced_by: UBERON:0014485 + +[Term] +id: UBERON:0009555 +name: short pastern bone +def: "The middle phalanx of digit 3 in a horse" [http://en.wikipedia.org/wiki/Pastern, http://orcid.org/0000-0002-6601-2165] +synonym: "equine middle phalanx" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "equine phalanx 2" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "equine phalanx 2 of digit III" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: http://www.snomedbrowser.com/Codes/Details/370730008 +is_a: UBERON:0009558 ! pastern bone +is_a: UBERON:0014489 ! middle phalanx of digit 3 + +[Term] +id: UBERON:0009556 +name: long pastern bone +def: "The proximal phalanx of digit 3 in a horse" [http://en.wikipedia.org/wiki/Pastern, http://orcid.org/0000-0002-6601-2165] +synonym: "equine phalanx 1 of digit III" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "equine proximal phalanx" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: http://www.snomedbrowser.com/Codes/Details/370733005 +is_a: UBERON:0009558 ! pastern bone +is_a: UBERON:0014503 ! proximal phalanx of digit 3 + +[Term] +id: UBERON:0009557 +name: obsolete coffin joint +is_obsolete: true +replaced_by: UBERON:0009768 + +[Term] +id: UBERON:0009558 +name: pastern bone +def: "A bone that is part of the pastern region of a horse limb. i.e. proximal or middle (P1 or P2) phalanges in digit 3." [http://en.wikipedia.org/wiki/Pastern, http://orcid.org/0000-0002-6601-2165] +xref: http://en.wikipedia.org/wiki/Pastern +is_a: UBERON:0003221 ! phalanx +intersection_of: UBERON:0003221 ! phalanx +intersection_of: part_of UBERON:0009563 ! pastern region of limb +relationship: part_of UBERON:0009563 ! pastern region of limb + +[Term] +id: UBERON:0009559 +name: metacarpal/tarsal-phalangeal joint +def: "A skeletal joint that connects a mesopodium bone and connects a proximal phalanx." [OBOL:automatic] +synonym: "fetlock" NARROW SENSU [http://en.wikipedia.org/wiki/Fetlock, https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] +synonym: "metacarpo-tarsophalangeal joint" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "metapodial-phalangeal joint" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "metapodium-phalanx joint" EXACT [https://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0003841 ! autopod joint +is_a: UBERON:0011139 ! synovial limb joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0003656 ! mesopodium bone +intersection_of: connects UBERON:0004302 ! proximal phalanx +relationship: connects UBERON:0003656 ! mesopodium bone +relationship: connects UBERON:0004302 ! proximal phalanx +relationship: part_of UBERON:0002544 ! digit + +[Term] +id: UBERON:0009563 +name: pastern region of limb +def: "A part of the leg of a horse between the fetlock and the top of the hoof. It incorporates the long pastern bone (proximal phalanx) and the short pastern bone (middle phalanx), which are held together by two sets of paired ligaments to form the pastern joint (proximal interphalangeal joint)" [http://en.wikipedia.org/wiki/Pastern] +xref: http://en.wikipedia.org/wiki/Pastern +xref: http://www.snomedbrowser.com/Codes/Details/370725009 +is_a: UBERON:0002529 ! limb segment +relationship: part_of UBERON:0006050 ! digit 3 + +[Term] +id: UBERON:0009564 +name: distal limb integumentary appendage +def: "A nail, hoof or claw." [http://www.ncbi.nlm.nih.gov/pubmed/11710767] +synonym: "hoof or claw" RELATED [] +synonym: "hoof, claw or nail" RELATED [] +synonym: "keratin plate" RELATED [] +synonym: "keratin sheath" RELATED [] +synonym: "unguis" RELATED [] +xref: MESH:D006724 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0013703 ! integumentary projection +relationship: develops_from UBERON:0011272 {source="Wikipathways:WP2062"} ! embryonic skin basal layer +relationship: part_of UBERON:0001003 ! skin epidermis +relationship: part_of UBERON:0009551 {source="cjm"} ! distal segment of digit + +[Term] +id: UBERON:0009565 +name: nail of manual digit +def: "A nail that is part of a manual digit." [OBOL:automatic] +subset: pheno_slim +synonym: "claw of hand" NARROW SENSU [] +synonym: "claw of manus" NARROW SENSU [] +synonym: "finger nail" EXACT [FMA:54327] +synonym: "fingernail" EXACT [FMA:54327] +synonym: "forelimb digit claw" NARROW SENSU [EMAPA:35349] +synonym: "manual claw" NARROW SENSU [] +synonym: "nail of finger" EXACT [FMA:54327] +synonym: "nail plate of finger" RELATED [FMA:54327] +xref: EMAPA:35349 +xref: FMA:54327 +xref: http://linkedlifedata.com/resource/umls/id/C0222001 +xref: http://www.snomedbrowser.com/Codes/Details/244197001 +xref: NCIT:C32609 +xref: UMLS:C0222001 {source="ncithesaurus:Fingernail"} +is_a: UBERON:0001705 ! nail +intersection_of: UBERON:0001705 ! nail +intersection_of: part_of UBERON:0002389 ! manual digit +relationship: part_of UBERON:0005276 {source="FMA"} ! dorsal skin of finger +relationship: part_of UBERON:0009552 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! distal segment of manual digit + +[Term] +id: UBERON:0009566 +name: intestinal submucosa +def: "A submucosa that is part of a intestine." [OBOL:automatic] +synonym: "submucosa of intestine" EXACT [FMA:15696] +xref: FMA:15696 +is_a: UBERON:0018257 ! submucosa of digestive tract +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0000160 ! intestine +relationship: part_of UBERON:0001262 {source="FMA"} ! wall of intestine + +[Term] +id: UBERON:0009567 +name: nail of pedal digit +def: "A nail that is part of a pedal digit." [OBOL:automatic] +subset: pheno_slim +synonym: "claw of foot" NARROW SENSU [] +synonym: "claw of pes" NARROW SENSU [] +synonym: "claw of toe" NARROW SENSU [] +synonym: "hindlimb claw" NARROW SENSU [EMAPA:36457] +synonym: "hindlimb digit claw" NARROW SENSU [] +synonym: "nail of pes" EXACT [] +synonym: "nail of toe" EXACT [FMA:54328] +synonym: "nail plate of toe" RELATED [FMA:54328] +synonym: "pedal claw" NARROW SENSU [] +synonym: "toe nail" EXACT [FMA:54328] +synonym: "toenail" EXACT [FMA:54328] +xref: EMAPA:36457 +xref: FMA:54328 +xref: http://linkedlifedata.com/resource/umls/id/C0222007 +xref: http://www.snomedbrowser.com/Codes/Details/244198006 +xref: NCIT:C33790 +xref: UMLS:C0222007 {source="ncithesaurus:Toe_Nail"} +is_a: UBERON:0001705 ! nail +intersection_of: UBERON:0001705 ! nail +intersection_of: part_of UBERON:0001466 ! pedal digit +relationship: part_of UBERON:0005277 {source="FMA"} ! dorsal skin of toe +relationship: part_of UBERON:0009553 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! distal segment of pedal digit + +[Term] +id: UBERON:0009568 +name: trunk region of vertebral column +def: "Subdivision of vertebral column that corresponds to the trunk of the body, containing the trunk/presacral vertebrae. In organisms that have a thoracic and lumbar distinction, this corresponds to the sum of both of these regions." [UBERONREF:0000006] +subset: pheno_slim +synonym: "presacral region" RELATED [AAO:0000612] +synonym: "thoracolumbar column" EXACT [] +synonym: "thoracolumbar region" RELATED [AAO:0000612] +synonym: "thoracolumbar region of vertebral column" EXACT [] +synonym: "thoracolumbar vertebrae set" EXACT [FMA:72066] +synonym: "thoracolumbar vertebral column" EXACT [] +synonym: "trunk region" RELATED [AAO:0000612] +synonym: "trunk skeleton" RELATED [] +synonym: "trunk spine" RELATED [] +synonym: "trunk vertebrae series" EXACT [] +synonym: "trunk vertebral column" EXACT [] +xref: AAO:0000612 +xref: FMA:72066 +xref: http://www.snomedbrowser.com/Codes/Details/281699004 +xref: NCIT:C92597 +is_a: UBERON:0006077 ! subdivision of vertebral column +intersection_of: UBERON:0006077 ! subdivision of vertebral column +intersection_of: part_of UBERON:0002100 ! trunk +intersection_of: subdivision_of UBERON:0002100 ! trunk +relationship: part_of UBERON:0002100 ! trunk +relationship: subdivision_of UBERON:0002100 ! trunk + +[Term] +id: UBERON:0009569 +name: subdivision of trunk +subset: non_informative +synonym: "region of trunk" EXACT [FMA:25054] +synonym: "trunk subdivision" EXACT [FMA:25054] +xref: FMA:25054 +xref: http://www.snomedbrowser.com/Codes/Details/22943007 +is_a: UBERON:0000475 ! organism subdivision +relationship: part_of UBERON:0002100 ! trunk + +[Term] +id: UBERON:0009570 +name: spinal cord sulcus limitans +def: "A sulcus limitans of neural tube that is part of a future spinal cord." [OBOL:automatic] +synonym: "spinal cord lateral wall sulcus limitans" EXACT [EHDAA2:0001265] +xref: EHDAA2:0001265 +xref: EMAPA:17584 +xref: VHOG:0001548 +is_a: UBERON:0005478 ! sulcus limitans of neural tube +intersection_of: UBERON:0005478 ! sulcus limitans of neural tube +intersection_of: part_of UBERON:0006241 ! future spinal cord +relationship: part_of UBERON:0006241 ! future spinal cord + +[Term] +id: UBERON:0009571 +name: ventral midline +def: "In protostomes (such as insects, snails and worms) as well as deuterostomes (vertebrates), the midline is an embryonic region that functions in patterning of the adjacent nervous tissue. The ventral midline in insects is a cell population extending along the ventral surface of the embryo and is the region from which cells detach to form the ventrally located nerve cords. In vertebrates, the midline is originally located dorsally. During development, it folds inwards and becomes the ventral part of the dorsally located neural tube and is then called the ventral midline, or floor plate." [GOC:bf, GOC:go_curators, http://www.ncbi.nlm.nih.gov/pubmed/12075342] +xref: FBbt:00000093 +is_a: UBERON:0002050 {source="FMA"} ! embryonic structure +relationship: part_of UBERON:0001016 ! nervous system + +[Term] +id: UBERON:0009572 +name: lumen of central canal of spinal cord +def: "A cerebrospinal fluid-filled space that runs longitudinally through the length of the entire spinal cord. The central canal is contiguous with the ventricular system of the brain. The central canal represents the adult remainder of the neural tube." [http://en.wikipedia.org/wiki/Central_canal] +synonym: "cavity of central canal of spinal cord" EXACT [FMA:242845] +synonym: "central canal lumen" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "neural lumen" RELATED [] +synonym: "spinal cord lumen" EXACT [EMAPA:25042] +xref: Central:canal +xref: EMAPA:25042 +xref: FMA:242845 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0002291 ! central canal of spinal cord +relationship: develops_from UBERON:0003842 ! neural tube lumen +relationship: luminal_space_of UBERON:0002291 ! central canal of spinal cord +relationship: part_of UBERON:0002291 ! central canal of spinal cord +relationship: surrounds UBERON:0001359 ! cerebrospinal fluid +relationship: transformation_of UBERON:0003842 ! neural tube lumen + +[Term] +id: UBERON:0009573 +name: sulcus limitans of fourth ventricle +def: "In the floor of the fourth ventricle, the sulcus limitans separates the cranial nerve motor nuclei (medial) from the sensory nuclei (lateral). In the superior part of the rhomboid fossa, it corresponds with the lateral limit of the fossa and presents a bluish-gray area, the locus ceruleus (which owes its color to an underlying patch of deeply pigmented nerve cells, termed the substantia ferruginea). [WP]" [http://en.wikipedia.org/wiki/Sulcus_limitans] +synonym: "s. limitans fossae rhomboideae" RELATED LATIN [http://en.wikipedia.org/wiki/Sulcus_limitans] +synonym: "sulcus limitans" BROAD [FMA:78496] +xref: BAMS:slim +xref: BAMS:slm +xref: DHBA:12823 +xref: FMA:78496 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=629 +xref: http://linkedlifedata.com/resource/umls/id/C0262332 +xref: NCIT:C33656 +xref: Sulcus:limitans +xref: UMLS:C0262332 {source="ncithesaurus:Sulcus_Limitans"} +is_a: UBERON:0002553 ! anatomical cavity +relationship: part_of UBERON:0002422 ! fourth ventricle + +[Term] +id: UBERON:0009576 +name: medulla oblongata sulcus limitans +def: "A sulcus limitans of neural tube that is part of a future medulla oblongata." [OBOL:automatic] +xref: EHDAA2:0001100 +xref: EMAPA:17561 +is_a: UBERON:0005478 ! sulcus limitans of neural tube +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0005478 ! sulcus limitans of neural tube +intersection_of: part_of UBERON:0001896 ! medulla oblongata +relationship: develops_from UBERON:0009578 {source="EHDAA2"} ! myelencephalon sulcus limitans +relationship: part_of UBERON:0001896 ! medulla oblongata + +[Term] +id: UBERON:0009577 +name: metencephalon sulcus limitans +def: "A sulcus limitans of neural tube that is part of a future metencephalon." [OBOL:automatic] +xref: EHDAA2:0001161 +xref: EMAPA:17567 +is_a: UBERON:0005478 ! sulcus limitans of neural tube +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0005478 ! sulcus limitans of neural tube +intersection_of: part_of UBERON:0010092 ! future metencephalon +relationship: part_of UBERON:0010092 ! future metencephalon + +[Term] +id: UBERON:0009578 +name: myelencephalon sulcus limitans +def: "A sulcus limitans of neural tube that is part of a future myelencephalon." [OBOL:automatic] +xref: EHDAA2:0001945 +is_a: UBERON:0005478 ! sulcus limitans of neural tube +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0005478 ! sulcus limitans of neural tube +intersection_of: part_of UBERON:0010096 ! future myelencephalon +relationship: part_of UBERON:0010096 ! future myelencephalon + +[Term] +id: UBERON:0009579 +name: myelencephalon basal plate +synonym: "basal plate myelencephalon" EXACT [VHOG:0000322] +synonym: "future myelencephalon basal plate" EXACT [EHDAA2:0000646] +xref: EHDAA2:0000646 +xref: EMAPA:17088 +xref: VHOG:0000322 +is_a: UBERON:0004064 ! neural tube basal plate + +[Term] +id: UBERON:0009580 +name: diencephalon mantle layer +synonym: "diencephalon lateral wall mantle layer" EXACT [] +synonym: "mantle layer lateral wall diencephalon" EXACT [VHOG:0000912] +xref: EHDAA2:0000397 +xref: EMAPA:16906 +xref: VHOG:0000912 +is_a: UBERON:0004061 ! neural tube mantle layer +intersection_of: UBERON:0004061 ! neural tube mantle layer +intersection_of: part_of UBERON:0006222 ! future diencephalon +relationship: part_of UBERON:0006222 ! future diencephalon + +[Term] +id: UBERON:0009581 +name: midbrain mantle layer +synonym: "mantle layer lateral wall mesencephalon" RELATED [VHOG:0000910] +synonym: "mantle layer lateral wall midbrain" EXACT [VHOG:0000910] +synonym: "midbrain lateral wall mantle layer" EXACT [] +xref: EHDAA2:0001172 +xref: EMAPA:16977 +xref: VHOG:0000910 +is_a: UBERON:0004061 ! neural tube mantle layer +intersection_of: UBERON:0004061 ! neural tube mantle layer +intersection_of: part_of UBERON:0009616 ! presumptive midbrain +relationship: part_of UBERON:0009616 ! presumptive midbrain + +[Term] +id: UBERON:0009582 +name: spinal cord lateral wall +subset: efo_slim +synonym: "lateral wall spinal cord" EXACT [ZFA:0000996] +xref: EFO:0003602 +xref: EMAPA:17579 +xref: MA:0003192 +xref: TAO:0000996 +xref: ZFA:0000996 +is_a: UBERON:0005496 ! neural tube lateral wall +relationship: part_of UBERON:0002240 {source="EMAPA"} ! spinal cord + +[Term] +id: UBERON:0009583 +name: spinal cord mantle layer +synonym: "mantle layer lateral wall spinal cord" EXACT [VHOG:0000911] +synonym: "spinal cord lateral wall mantle layer" EXACT [] +xref: EMAPA:17580 +xref: VHOG:0000911 +is_a: UBERON:0004061 ! neural tube mantle layer +intersection_of: UBERON:0004061 ! neural tube mantle layer +intersection_of: part_of UBERON:0006241 ! future spinal cord +relationship: part_of UBERON:0006241 ! future spinal cord + +[Term] +id: UBERON:0009584 +name: 1st arch mandibular mesenchyme +alt_id: UBERON:0010043 +def: "Mesenchyme that is part of a 1st arch mandibular component." [OBOL:automatic] +synonym: "mandibular component mesenchyme" RELATED [] +synonym: "mandibular mesenchyme" RELATED [] +synonym: "mesenchymal region of mandibular component of first pharyngeal arch" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "mesenchyme of mandibular component" EXACT [EMAPA:16385] +xref: EHDAA2:0000034 +xref: EMAPA:16385 +is_a: UBERON:0010042 ! 1st arch mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0007237 ! 1st arch mandibular component +relationship: part_of UBERON:0007237 {source="EMAPA"} ! 1st arch mandibular component + +[Term] +id: UBERON:0009585 +name: interdigital region mesenchyme +def: "Mesenchyme that is part of a developing interdigital region." [OBOL:automatic] +comment: influences identity of anterior digit[Dahn and Fallon 2000], likely via BMP4 +synonym: "interdigit mesenchyme" RELATED [] +synonym: "interdigital mesenchyme" EXACT [] +synonym: "mesenchyme of interdigital region" EXACT [] +xref: EMAPA:32609 +is_a: UBERON:0009749 ! limb mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0006012 ! interdigital region +relationship: part_of UBERON:0006012 ! interdigital region + +[Term] +id: UBERON:0009586 +name: mesenchyme of interdigital region between manual digits 1 and 2 +def: "An interdigital region mesenchyme that is part of a interdigital region between manual digits 1 and 2." [OBOL:automatic] +synonym: "interdigital region between fingers 1 and 2 mesenchyme" EXACT [EHDAA2:0000846] +synonym: "mesenchyme of interdigital region between manual digits I and II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EHDAA2:0000846 +xref: EMAPA:17447 +is_a: UBERON:0009596 ! mesenchyme of interdigital region between digits 1 and 2 +is_a: UBERON:0009600 ! mesenchyme of interdigital region of manus +intersection_of: UBERON:0009585 ! interdigital region mesenchyme +intersection_of: part_of UBERON:0006026 ! interdigital region between manual digits 1 and 2 +relationship: part_of UBERON:0006026 {source="EMAPA"} ! interdigital region between manual digits 1 and 2 + +[Term] +id: UBERON:0009587 +name: mesenchyme of interdigital region between manual digits 2 and 3 +def: "An interdigital region mesenchyme that is part of a interdigital region between manual digits 2 and 3." [OBOL:automatic] +synonym: "interdigital region between fingers 2 and 3 mesenchyme" EXACT [EHDAA2:0000849] +synonym: "mesenchyme of interdigital region between manual digits II and III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EHDAA2:0000849 +xref: EMAPA:17450 +is_a: UBERON:0009597 ! mesenchyme of interdigital region between digits 2 and 3 +is_a: UBERON:0009600 ! mesenchyme of interdigital region of manus +intersection_of: UBERON:0009585 ! interdigital region mesenchyme +intersection_of: part_of UBERON:0006029 ! interdigital region between manual digits 2 and 3 +relationship: part_of UBERON:0006029 {source="EMAPA"} ! interdigital region between manual digits 2 and 3 + +[Term] +id: UBERON:0009588 +name: mesenchyme of interdigital region between manual digits 3 and 4 +def: "An interdigital region mesenchyme that is part of a interdigital region between manual digits 3 and 4." [OBOL:automatic] +synonym: "interdigital region between fingers 3 and 4 mesenchyme" EXACT [EHDAA2:0000852] +synonym: "mesenchyme of interdigital region between manual digits III and IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EHDAA2:0000852 +xref: EMAPA:17453 +is_a: UBERON:0009598 ! mesenchyme of interdigital region between digits 3 and 4 +is_a: UBERON:0009600 ! mesenchyme of interdigital region of manus +intersection_of: UBERON:0009585 ! interdigital region mesenchyme +intersection_of: part_of UBERON:0006032 ! interdigital region between manual digits 3 and 4 +relationship: part_of UBERON:0006032 {source="EMAPA"} ! interdigital region between manual digits 3 and 4 + +[Term] +id: UBERON:0009589 +name: mesenchyme of interdigital region between manual digits 4 and 5 +def: "An interdigital region mesenchyme that is part of a interdigital region between manual digits 4 and 5." [OBOL:automatic] +synonym: "interdigital region between fingers 4 and 5 mesenchyme" EXACT [EHDAA2:0000855] +synonym: "mesenchyme of interdigital region between manual digits IV and V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EHDAA2:0000855 +xref: EMAPA:17456 +is_a: UBERON:0009599 ! mesenchyme of interdigital region between digits 4 and 5 +is_a: UBERON:0009600 ! mesenchyme of interdigital region of manus +intersection_of: UBERON:0009585 ! interdigital region mesenchyme +intersection_of: part_of UBERON:0006035 ! interdigital region between manual digits 4 and 5 +relationship: part_of UBERON:0006035 {source="EMAPA"} ! interdigital region between manual digits 4 and 5 + +[Term] +id: UBERON:0009590 +name: mesenchyme of interdigital region between pedal digits 1 and 2 +def: "An interdigital region mesenchyme that is part of a interdigital region between pedal digits 1 and 2." [OBOL:automatic] +synonym: "interdigital region between toes 1 and 2 mesenchyme" EXACT [EHDAA2:0000858] +synonym: "mesenchyme of interdigital region between pedal digits I and II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EHDAA2:0000858 +xref: EMAPA:17478 +is_a: UBERON:0009596 ! mesenchyme of interdigital region between digits 1 and 2 +is_a: UBERON:0009601 ! mesenchyme of interdigital region of pes +intersection_of: UBERON:0009585 ! interdigital region mesenchyme +intersection_of: part_of UBERON:0006038 ! interdigital region between pedal digits 1 and 2 +relationship: part_of UBERON:0006038 {source="EMAPA"} ! interdigital region between pedal digits 1 and 2 + +[Term] +id: UBERON:0009591 +name: mesenchyme of interdigital region between pedal digits 2 and 3 +def: "An interdigital region mesenchyme that is part of a interdigital region between pedal digits 2 and 3." [OBOL:automatic] +synonym: "interdigital region between toes 2 and 3 mesenchyme" EXACT [EHDAA2:0000861] +synonym: "mesenchyme of interdigital region between pedal digits II and III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EHDAA2:0000861 +xref: EMAPA:17481 +is_a: UBERON:0009597 ! mesenchyme of interdigital region between digits 2 and 3 +is_a: UBERON:0009601 ! mesenchyme of interdigital region of pes +intersection_of: UBERON:0009585 ! interdigital region mesenchyme +intersection_of: part_of UBERON:0006041 ! interdigital region between pedal digits 2 and 3 +relationship: part_of UBERON:0006041 {source="EMAPA"} ! interdigital region between pedal digits 2 and 3 + +[Term] +id: UBERON:0009592 +name: mesenchyme of interdigital region between pedal digits 3 and 4 +def: "An interdigital region mesenchyme that is part of a interdigital region between pedal digits 3 and 4." [OBOL:automatic] +synonym: "interdigital region between toes 3 and 4 mesenchyme" EXACT [EHDAA2:0000864] +synonym: "mesenchyme of interdigital region between pedal digits III and IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EHDAA2:0000864 +xref: EMAPA:17484 +is_a: UBERON:0009598 ! mesenchyme of interdigital region between digits 3 and 4 +is_a: UBERON:0009601 ! mesenchyme of interdigital region of pes +intersection_of: UBERON:0009585 ! interdigital region mesenchyme +intersection_of: part_of UBERON:0006044 ! interdigital region between pedal digits 3 and 4 +relationship: part_of UBERON:0006044 {source="EMAPA"} ! interdigital region between pedal digits 3 and 4 + +[Term] +id: UBERON:0009593 +name: mesenchyme of interdigital region between pedal digits 4 and 5 +def: "An interdigital region mesenchyme that is part of a interdigital region between pedal digits 4 and 5." [OBOL:automatic] +synonym: "interdigital region between toes 4 and 5 mesenchyme" EXACT [EHDAA2:0000867] +synonym: "mesenchyme of interdigital region between pedal digits IV and V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EHDAA2:0000867 +xref: EMAPA:17487 +is_a: UBERON:0009599 ! mesenchyme of interdigital region between digits 4 and 5 +is_a: UBERON:0009601 ! mesenchyme of interdigital region of pes +intersection_of: UBERON:0009585 ! interdigital region mesenchyme +intersection_of: part_of UBERON:0006047 ! interdigital region between pedal digits 4 and 5 +relationship: part_of UBERON:0006047 {source="EMAPA"} ! interdigital region between pedal digits 4 and 5 + +[Term] +id: UBERON:0009596 +name: mesenchyme of interdigital region between digits 1 and 2 +def: "An interdigital region mesenchyme that is part of a interdigital region between digits 1 and 2." [OBOL:automatic] +synonym: "mesenchyme of interdigital region between digits I and II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0009585 ! interdigital region mesenchyme +intersection_of: UBERON:0009585 ! interdigital region mesenchyme +intersection_of: part_of UBERON:0006016 ! interdigital region between digits 1 and 2 +relationship: part_of UBERON:0006016 ! interdigital region between digits 1 and 2 + +[Term] +id: UBERON:0009597 +name: mesenchyme of interdigital region between digits 2 and 3 +def: "An interdigital region mesenchyme that is part of a interdigital region between digits 2 and 3." [OBOL:automatic] +synonym: "mesenchyme of interdigital region between digits II and III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0009585 ! interdigital region mesenchyme +intersection_of: UBERON:0009585 ! interdigital region mesenchyme +intersection_of: part_of UBERON:0006019 ! interdigital region between digits 2 and 3 +relationship: part_of UBERON:0006019 ! interdigital region between digits 2 and 3 + +[Term] +id: UBERON:0009598 +name: mesenchyme of interdigital region between digits 3 and 4 +def: "An interdigital region mesenchyme that is part of a interdigital region between digits 3 and 4." [OBOL:automatic] +synonym: "mesenchyme of interdigital region between digits III and IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0009585 ! interdigital region mesenchyme +intersection_of: UBERON:0009585 ! interdigital region mesenchyme +intersection_of: part_of UBERON:0006022 ! interdigital region between digits 3 and 4 +relationship: part_of UBERON:0006022 ! interdigital region between digits 3 and 4 + +[Term] +id: UBERON:0009599 +name: mesenchyme of interdigital region between digits 4 and 5 +def: "An interdigital region mesenchyme that is part of a interdigital region between digits 4 and 5." [OBOL:automatic] +synonym: "mesenchyme of interdigital region between digits IV and V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0009585 ! interdigital region mesenchyme +intersection_of: UBERON:0009585 ! interdigital region mesenchyme +intersection_of: part_of UBERON:0006025 ! interdigital region between digits 4 and 5 +relationship: part_of UBERON:0006025 ! interdigital region between digits 4 and 5 + +[Term] +id: UBERON:0009600 +name: mesenchyme of interdigital region of manus +def: "An interdigital region mesenchyme that is part of a manus." [OBOL:automatic] +synonym: "mesenchyme of interdigital region of forelimb" EXACT [] +xref: EMAPA:32653 +is_a: UBERON:0003859 ! forelimb mesenchyme +is_a: UBERON:0009585 ! interdigital region mesenchyme +intersection_of: UBERON:0009585 ! interdigital region mesenchyme +intersection_of: part_of UBERON:0002398 ! manus +relationship: part_of UBERON:0006013 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! interdigital region between manual digits + +[Term] +id: UBERON:0009601 +name: mesenchyme of interdigital region of pes +def: "An interdigital region mesenchyme that is part of a pes." [OBOL:automatic] +synonym: "mesenchyme of interdigital region of hindlimb" EXACT [] +xref: EMAPA:32955 +is_a: UBERON:0003860 ! hindlimb mesenchyme +is_a: UBERON:0009585 ! interdigital region mesenchyme +intersection_of: UBERON:0009585 ! interdigital region mesenchyme +intersection_of: part_of UBERON:0002387 ! pes +relationship: part_of UBERON:0006014 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! interdigital region between pedal digits + +[Term] +id: UBERON:0009602 +name: left lung associated mesenchyme +def: "Mesenchyme that is part of a developing left lung." [OBOL:automatic] +synonym: "left lung mesenchyme" EXACT [EMAPA:17654] +xref: EHDAA2:0000944 +xref: EMAPA:16730 +xref: EMAPA:17654 +is_a: UBERON:0004883 ! lung mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0002168 ! left lung +relationship: part_of UBERON:0002168 ! left lung + +[Term] +id: UBERON:0009603 +name: right lung associated mesenchyme +def: "Mesenchyme that is part of a developing right lung." [OBOL:automatic] +synonym: "right lung mesenchyme" EXACT [EMAPA:17662] +xref: EHDAA2:0001739 +xref: EMAPA:17662 +is_a: UBERON:0004883 ! lung mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0002167 ! right lung +relationship: part_of UBERON:0002167 ! right lung + +[Term] +id: UBERON:0009610 +name: forebrain neural plate +def: "A neural plate that develops_from a future forebrain." [OBOL:automatic] +xref: TAO:0007018 +xref: ZFA:0007018 +is_a: UBERON:0003075 ! neural plate +intersection_of: UBERON:0003075 {source="ZFA"} ! neural plate +intersection_of: develops_from UBERON:0006240 {source="ZFA"} ! future forebrain +relationship: develops_from UBERON:0006240 ! future forebrain +relationship: part_of UBERON:0003056 {source="ZFA"} ! pre-chordal neural plate + +[Term] +id: UBERON:0009611 +name: midbrain neural plate +def: "A neural plate that develops_from a presumptive midbrain." [OBOL:automatic] +xref: TAO:0007019 +xref: ZFA:0007019 +is_a: UBERON:0003075 ! neural plate +intersection_of: UBERON:0003075 {source="ZFA"} ! neural plate +intersection_of: develops_from UBERON:0009616 {source="ZFA"} ! presumptive midbrain +relationship: develops_from UBERON:0009616 ! presumptive midbrain +relationship: part_of UBERON:0003056 {source="ZFA"} ! pre-chordal neural plate + +[Term] +id: UBERON:0009612 +name: forebrain midbrain boundary neural plate +synonym: "diencephalic-mesencephalic boundary neural plate" EXACT [ZFA:0007020] +xref: TAO:0007020 +xref: ZFA:0007020 +is_a: UBERON:0006800 {source="ZFA"} ! anatomical line +relationship: develops_from UBERON:0007288 {source="ZFA"} ! presumptive forebrain midbrain boundary +relationship: part_of UBERON:0003056 {source="ZFA"} ! pre-chordal neural plate + +[Term] +id: UBERON:0009614 +name: hindbrain neural plate +def: "A neural plate that develops_from a presumptive hindbrain." [OBOL:automatic] +xref: TAO:0007022 +xref: ZFA:0007022 +is_a: UBERON:0003075 ! neural plate +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0003075 {source="ZFA"} ! neural plate +intersection_of: develops_from UBERON:0007277 {source="ZFA"} ! presumptive hindbrain +relationship: develops_from UBERON:0007277 ! presumptive hindbrain +relationship: part_of UBERON:0003057 {source="ZFA"} ! chordal neural plate + +[Term] +id: UBERON:0009615 +name: midbrain hindbrain boundary neural plate +synonym: "MHB neural plate" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "midbrain-hindbrain boundary neural plate" EXACT [ZFA:0007044] +xref: TAO:0007044 +xref: ZFA:0007044 +is_a: UBERON:0006598 ! presumptive structure +relationship: develops_from UBERON:0007281 ! presumptive midbrain hindbrain boundary +relationship: immediate_transformation_of UBERON:0007281 {notes="https://github.com/obophenotype/uberon/issues/438", source="Bgee:AN"} ! presumptive midbrain hindbrain boundary +relationship: part_of UBERON:0003075 {source="ZFA"} ! neural plate + +[Term] +id: UBERON:0009616 +name: presumptive midbrain +def: "A presumptive structure that has the potential to develop into a midbrain." [OBOL:automatic] +subset: efo_slim +synonym: "early midbrain" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "future midbrain" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "mesencephalon" RELATED [EHDAA2:0000615] +synonym: "presumptive mesencephalon" EXACT [ZFA:0000148] +xref: BAMS:MES +xref: EFO:0003432 +xref: EHDAA2:0000615 +xref: EMAPA:16140 +xref: http://en.wikipedia.org/wiki/Mesencephalon +xref: TAO:0000148 +xref: ZFA:0000148 +is_a: UBERON:0006598 ! presumptive structure +intersection_of: UBERON:0006598 ! presumptive structure +intersection_of: has_potential_to_develop_into UBERON:0001891 ! midbrain +relationship: develops_from UBERON:0003080 ! anterior neural tube +relationship: develops_from UBERON:0010286 {source="ZFA"} ! midbrain neural tube +relationship: has_potential_to_develop_into UBERON:0001891 ! midbrain +relationship: part_of UBERON:0006238 {source="ZFA"} ! future brain + +[Term] +id: UBERON:0009617 +name: head paraxial mesoderm +def: "Bilateral mesenchymal mesoderm parallel and immediately adjacent to the neural tube/notochord; it generates a subset of extra-ocular, and other head, muscles." [http://www.ncbi.nlm.nih.gov/pubmed/21610022] +synonym: "cephalic paraxial mesenchyme" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "cephalic paraxial mesoderm" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "cranial paraxial mesenchyme" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "cranial paraxial mesoderm" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "head paraxial mesenchyme" EXACT [EHDAA2:0000736, https://github.com/obophenotype/uberon/issues/30] +synonym: "somitomere" RELATED [] +synonym: "somitomeric mesoderm" RELATED [] +xref: EHDAA2:0000736 +xref: EHDAA:364 +xref: EMAPA:16171 +is_a: UBERON:0005253 ! head mesenchyme +relationship: part_of UBERON:0003077 ! paraxial mesoderm + +[Term] +id: UBERON:0009618 +name: trunk paraxial mesoderm +synonym: "trunk and cervical paraxial mesenchyme" EXACT [EHDAA2:0002094] +synonym: "trunk paraxial mesenchyme" RELATED [https://github.com/obophenotype/uberon/issues/30] +xref: EHDAA2:0002094 +is_a: UBERON:0005256 ! trunk mesenchyme +relationship: part_of UBERON:0003077 ! paraxial mesoderm + +[Term] +id: UBERON:0009620 +name: tail bud paraxial mesoderm +xref: EHDAA2:0003239 +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue +relationship: develops_from UBERON:0009618 {source="EHDAA2"} ! trunk paraxial mesoderm +relationship: part_of UBERON:0002533 {source="EHDAA2"} ! post-anal tail bud +relationship: part_of UBERON:0003077 ! paraxial mesoderm + +[Term] +id: UBERON:0009621 +name: tail somite +def: "A somite that is part of a tail." [OBOL:automatic] +xref: AAO:0010383 +xref: EMAPA:16860 +xref: XAO:0003143 +is_a: UBERON:0002329 ! somite +intersection_of: UBERON:0002329 ! somite +intersection_of: part_of UBERON:0002415 ! tail +relationship: part_of UBERON:0002415 ! tail + +[Term] +id: UBERON:0009622 +name: pronephric proximal straight tubule +def: "A proximal straight tubule that is part of a pronephros." [ZFIN:ZDB-PUB-071029-9] +synonym: "proximal straight tubules" RELATED PLURAL [TAO:0002239] +xref: TAO:0002239 +xref: ZFA:0001621 +is_a: UBERON:0001290 ! proximal straight tubule +is_a: UBERON:0005310 ! pronephric nephron tubule +intersection_of: UBERON:0001290 ! proximal straight tubule +intersection_of: part_of UBERON:0002120 ! pronephros +relationship: part_of UBERON:0006173 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! pronephric proximal tubule + +[Term] +id: UBERON:0009623 +name: spinal nerve root +def: "The paired bundles of nerve fibers entering and leaving the spinal cord at each segment. The dorsal and ventral nerve roots join to form the mixed segmental spinal nerves. The dorsal roots are generally afferent, formed by the central projections of the spinal (dorsal root) ganglia sensory cells, and the ventral roots efferent, comprising the axons of spinal motor and autonomic preganglionic neurons. There are, however, some exceptions to this afferent/efferent rule." [MESH:A08.800.800.720.725] +synonym: "root of spinal nerve" EXACT [FMA:14060] +synonym: "spinal neural root" EXACT [FMA:14060] +synonym: "spinal root" EXACT [BTO:0000883] +xref: BTO:0000883 +xref: DHBA:146035120 +xref: FMA:14060 +xref: GAID:717 +xref: http://linkedlifedata.com/resource/umls/id/C0037940 +xref: http://www.snomedbrowser.com/Codes/Details/362436008 +xref: MESH:D013126 +xref: NCIT:C12791 +xref: UMLS:C0037940 {source="ncithesaurus:Spinal_Nerve_Root"} +xref: ZFA:0005578 +is_a: UBERON:0002211 {source="FMA"} ! nerve root +intersection_of: UBERON:0002211 ! nerve root +intersection_of: extends_fibers_into UBERON:0001780 ! spinal nerve +intersection_of: extends_fibers_into UBERON:0002240 ! spinal cord +relationship: contributes_to_morphology_of UBERON:0001780 ! spinal nerve +relationship: contributes_to_morphology_of UBERON:0002240 ! spinal cord +relationship: extends_fibers_into UBERON:0001780 ! spinal nerve +relationship: extends_fibers_into UBERON:0002240 ! spinal cord +relationship: located_in UBERON:0006692 ! vertebral canal + +[Term] +id: UBERON:0009624 +name: lumbar nerve +def: "The lumbar nerves are the five spinal nerves emerging from the lumbar vertebrae. They are divided into posterior and anterior divisions." [http://en.wikipedia.org/wiki/Lumbar_nerves] +synonym: "lumbar spinal nerve" EXACT [FMA:5861] +synonym: "nervi lumbales" RELATED LATIN [http://en.wikipedia.org/wiki/Lumbar_nerves] +synonym: "nervus lumbalis" EXACT LATIN [FMA:5861, FMA:TA] +xref: FMA:5861 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1730 +xref: http://linkedlifedata.com/resource/umls/id/C0228897 +xref: http://www.snomedbrowser.com/Codes/Details/361600002 +xref: Lumbar:nerves +xref: NCIT:C33015 +xref: UMLS:C0228897 {source="ncithesaurus:Lumbar_Nerve"} +is_a: UBERON:0001780 ! spinal nerve +intersection_of: UBERON:0001780 ! spinal nerve +intersection_of: extends_fibers_into UBERON:0002792 ! lumbar spinal cord +relationship: extends_fibers_into UBERON:0002792 ! lumbar spinal cord + +[Term] +id: UBERON:0009625 +name: sacral nerve +def: "The five sacral nerves emerge from the sacrum. Although the vertebral components of the sacrum are fused into a single bone, the sacral vertebrae are still used to number the sacral nerves. Posteriorly, they emerge from the posterior sacral foramina, and form the posterior branches of sacral nerves. Anteriorly, they emerge from the anterior sacral foramina, and contribute to the sacral plexus (S1-S4) and coccygeal plexus." [http://en.wikipedia.org/wiki/Sacral_nerves] +synonym: "nervi sacrales" RELATED LATIN [http://en.wikipedia.org/wiki/Sacral_nerves] +synonym: "nervus sacralis" EXACT LATIN [FMA:5862, FMA:TA] +synonym: "sacral spinal nerve" EXACT [FMA:5862] +xref: FMA:5862 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1720 +xref: http://linkedlifedata.com/resource/umls/id/C0228922 +xref: http://www.snomedbrowser.com/Codes/Details/361601003 +xref: NCIT:C33505 +xref: Sacral:nerves +xref: UMLS:C0228922 {source="ncithesaurus:Sacral_Nerve"} +is_a: UBERON:0001780 ! spinal nerve +intersection_of: UBERON:0001780 ! spinal nerve +intersection_of: extends_fibers_into UBERON:0005843 ! sacral spinal cord +relationship: extends_fibers_into UBERON:0005843 ! sacral spinal cord + +[Term] +id: UBERON:0009629 +name: coccygeal nerve +def: "The coccygeal nerve is the spinal nerve that corresponds to the coccyx bone." [http://en.wikipedia.org/wiki/Coccygeal_nerve] +synonym: "coccygeal spinal nerve" EXACT [FMA:5863] +synonym: "nervus coccygeus" RELATED LATIN [http://en.wikipedia.org/wiki/Coccygeal_nerve] +xref: Coccygeal:nerve +xref: FMA:5863 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2369 +xref: http://linkedlifedata.com/resource/umls/id/C0228967 +xref: http://www.snomedbrowser.com/Codes/Details/287477006 +xref: NCIT:C32333 +xref: UMLS:C0228967 {source="ncithesaurus:Coccygeal_Nerve"} +is_a: UBERON:0001780 ! spinal nerve +relationship: extends_fibers_into UBERON:0005845 ! caudal segment of spinal cord +relationship: in_lateral_side_of UBERON:0000010 {source="FMA-abduced-lr"} ! peripheral nervous system + +[Term] +id: UBERON:0009630 +name: root of thoracic nerve +def: "A spinal nerve root that is part of a thoracic nerve." [OBOL:automatic] +synonym: "nerve root part of thoracic spinal cord" EXACT [NIF:NIF] +synonym: "thoracic nerve root" EXACT [FMA:14064] +synonym: "thoracic neural root" EXACT [FMA:14064] +xref: BIRNLEX:836 +xref: FMA:14064 +is_a: UBERON:0009623 ! spinal nerve root +intersection_of: UBERON:0009623 ! spinal nerve root +intersection_of: extends_fibers_into UBERON:0003726 ! thoracic nerve +relationship: extends_fibers_into UBERON:0003726 ! thoracic nerve + +[Term] +id: UBERON:0009631 +name: root of lumbar spinal nerve +def: "A spinal nerve root that is part of a lumbar nerve." [OBOL:automatic] +synonym: "lumbar spinal nerve root" EXACT [FMA:16421] +synonym: "lumbar spinal neural root" EXACT [FMA:16421] +synonym: "nerve root part of lumbar spinal cord" EXACT [NIF:NIF] +xref: BIRNLEX:1613 +xref: FMA:16421 +xref: http://linkedlifedata.com/resource/umls/id/C0581666 +xref: http://www.snomedbrowser.com/Codes/Details/180968005 +xref: NCIT:C12924 +xref: UMLS:C0581666 {source="ncithesaurus:Lumbar_Spinal_Nerve_Root"} +is_a: UBERON:0009623 ! spinal nerve root +intersection_of: UBERON:0009623 ! spinal nerve root +intersection_of: extends_fibers_into UBERON:0009624 ! lumbar nerve +relationship: extends_fibers_into UBERON:0009624 ! lumbar nerve + +[Term] +id: UBERON:0009632 +name: root of cervical nerve +synonym: "cervical neural root" EXACT [FMA:16422] +synonym: "cervical spinal root" EXACT [FMA:16422] +synonym: "nerve root part of cervical spinal cord" EXACT [NIF:NIF] +synonym: "root of cervical spinal nerve" EXACT [FMA:16422] +xref: BIRNLEX:955 +xref: FMA:16422 +xref: http://linkedlifedata.com/resource/umls/id/C0581631 +xref: http://www.snomedbrowser.com/Codes/Details/180966009 +xref: NCIT:C12893 +xref: UMLS:C0581631 {source="ncithesaurus:Cervical_Spinal_Nerve_Root"} +is_a: UBERON:0009623 ! spinal nerve root +intersection_of: UBERON:0009623 ! spinal nerve root +intersection_of: extends_fibers_into UBERON:0000962 ! nerve of cervical vertebra +relationship: extends_fibers_into UBERON:0000962 ! nerve of cervical vertebra + +[Term] +id: UBERON:0009633 +name: root of sacral nerve +def: "A spinal nerve root that is part of a sacral nerve." [OBOL:automatic] +synonym: "nerve root part of sacral spinal cord" EXACT [NIF:NIF] +synonym: "root of sacral spinal nerve" EXACT [FMA:18028] +synonym: "sacral neural root" EXACT [FMA:18028] +xref: BIRNLEX:1518 +xref: FMA:18028 +xref: http://linkedlifedata.com/resource/umls/id/C0581672 +xref: http://www.snomedbrowser.com/Codes/Details/244454000 +xref: NCIT:C12925 +xref: UMLS:C0581672 {source="ncithesaurus:Sacral_Spinal_Nerve_Root"} +is_a: UBERON:0009623 ! spinal nerve root +intersection_of: UBERON:0009623 ! spinal nerve root +intersection_of: extends_fibers_into UBERON:0009625 ! sacral nerve +disjoint_from: UBERON:0029503 {source="NIFSTD"} ! sacral spinal cord gray matter +relationship: extends_fibers_into UBERON:0009625 ! sacral nerve + +[Term] +id: UBERON:0009634 +name: root of coccygeal nerve +def: "A spinal nerve root that is part of a coccygeal nerve." [OBOL:automatic] +synonym: "coccygeal neural root" EXACT [FMA:18131] +synonym: "coccygeal spinal nerve root" EXACT [FMA:18131] +synonym: "root of coccygeal spinal nerve" EXACT [FMA:18131] +xref: FMA:18131 +is_a: UBERON:0009623 ! spinal nerve root +intersection_of: UBERON:0009623 ! spinal nerve root +intersection_of: extends_fibers_into UBERON:0009629 ! coccygeal nerve +relationship: extends_fibers_into UBERON:0009629 ! coccygeal nerve + +[Term] +id: UBERON:0009635 +name: parachordal cartilage +def: "Chondrocranium chondrification center that fuses with cartilages derived from sclerotome region of occipital somites forming occipital bone, hypoglossal canals and foramen magnum." [https://orcid.org/0000-0002-6601-2165, ISBN:1588903958] +synonym: "parachordal cartilages" EXACT PLURAL [ZFA:0001423] +xref: http://linkedlifedata.com/resource/umls/id/C1518887 +xref: NCIT:C34243 +xref: TAO:0001423 +xref: UMLS:C1518887 {source="ncithesaurus:Parachordal_Cartilage"} +xref: ZFA:0001423 +is_a: UBERON:0003932 {source="ZFA"} ! cartilage element of chondrocranium + +[Term] +id: UBERON:0009636 +name: prechordal cartilage +def: "Chondrocranium chondrification center that that forms anterior body of sphenoid, containing the sella turcica and posterior body of sphenoid." [https://orcid.org/0000-0002-6601-2165, ISBN:1588903958] +comment: classified as part of chondrocranium based on developmental relationships +is_a: UBERON:0003932 ! cartilage element of chondrocranium + +[Term] +id: UBERON:0009637 +name: alisphenoid ossification center +synonym: "alisphenoid center" RELATED [] +is_a: UBERON:0010355 ! ossification center + +[Term] +id: UBERON:0009638 +name: orbitosphenoid ossification center +comment: merge with sphenoid lesser wing cartilage element? +synonym: "orbitosphenoid center" RELATED [] +is_a: UBERON:0010355 ! ossification center + +[Term] +id: UBERON:0009639 +name: body of sphenoid +def: "The body of the sphenoid bone, more or less cubical in shape, is hollowed out in its interior to form two large cavities, the sphenoidal air sinuses, which are separated from each other by a septum." [http://en.wikipedia.org/wiki/Body_of_sphenoid_bone] +synonym: "body of sphenoidal bone" EXACT [FMA:52867] +synonym: "central body of sphenoid" EXACT [FMA:52867] +synonym: "corpus (os sphenoidale)" EXACT [FMA:52867] +synonym: "corpus ossis sphenoidalis" RELATED LATIN [http://en.wikipedia.org/wiki/Body_of_sphenoid_bone] +synonym: "Entire body of sphenoid bone" EXACT [] +synonym: "sphenoid body" EXACT [FMA:52867] +xref: FMA:52867 +xref: http://en.wikipedia.org/wiki/Body_of_sphenoid_bone +xref: http://www.snomedbrowser.com/Codes/Details/140491003 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0011164 ! neurocranium bone +relationship: develops_from UBERON:0009636 {source="ISBN:1588903958"} ! prechordal cartilage +relationship: develops_from UBERON:0009640 {source="ISBN:1588903958"} ! hypophyseal cartilage +relationship: part_of UBERON:0001677 {source="FMA"} ! sphenoid bone +relationship: part_of UBERON:0002517 {source="FMA"} ! basicranium + +[Term] +id: UBERON:0009640 +name: hypophyseal cartilage +def: "forms around the developing pituitary, and together with prechordal cartilages creates body of sphenoid bone" [ISBN:1588903958] +comment: classified as part of chondrocranium based on developmental relationships +is_a: UBERON:0003932 ! cartilage element of chondrocranium + +[Term] +id: UBERON:0009641 +name: ansa lenticularis +def: "The ansa lenticularis (ansa lentiformis in older texts) is a part of the brain, making up the superior layer of the substantia innominata of Meynert. Its fibers, derived from the medullary lamina of the lentiform nucleus, pass medially to end in the thalamus and subthalamic region, while others are said to end in the tegmentum and red nucleus. It is classified by NeuroNames as part of the subthalamus." [http://en.wikipedia.org/wiki/Ansa_lenticularis] +synonym: "ansa lenticularis in thalamo" EXACT LATIN [FMA:TA] +synonym: "ansa lenticularis in thalamus" EXACT [FMA:62070] +synonym: "ventral peduncle of lateral forebrain bundle" EXACT [FMA:62070] +xref: Ansa:lenticularis +xref: BAMS:al +xref: DHBA:10571 +xref: FMA:62070 +xref: HBA:9237 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=444 +xref: http://www.snomedbrowser.com/Codes/Details/37467007 +xref: NLXANAT:1010011 +is_a: UBERON:0003931 ! diencephalic white matter +relationship: part_of UBERON:0001900 {source="FMA"} ! ventral thalamus + +[Term] +id: UBERON:0009643 +name: central tegmental tract +def: "A pathway containing fibers from midbrain nuclei that project to the inferior olivary complex, as well as fibers originating in the pontine reticular formation and the medullary reticular formation that project to several nuclei of the thalamus. It can be identified in the midbrain and the pons (Adapted from Brain Info)." [NLXANAT:1010012] +xref: BAMS:ctg +xref: DHBA:12730 +xref: FMA:83850 +xref: HBA:12952 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2204 +xref: http://en.wikipedia.org/wiki/Central_tegmental_tract +xref: http://www.snomedbrowser.com/Codes/Details/369034000 +xref: NLXANAT:1010012 +is_a: UBERON:0007702 {source="FMA"} ! tract of brain + +[Term] +id: UBERON:0009644 +name: trachea non-cartilage connective tissue +xref: EMAPA:35878 +xref: MA:0001859 +is_a: UBERON:0003571 {source="MA"} ! trachea connective tissue + +[Term] +id: UBERON:0009645 +name: ampullary gland +def: "A paired accessory, glandular, androgen-dependent outpouchings of the proximal ductus deferens, one on each side, that produce and secrete lipids and glycogen, components of the seminal fluid; they open into the ampullae at the level of the colliculus seminalis, are lined by simple columnar epithelium with large, oval nuclei, and may be distinguished from those of the prostate as they are surrounded by a characteristic, dense, fibromuscular stroma" [MP:0013323] +subset: pheno_slim +synonym: "ampulla of the vas" EXACT [] +synonym: "ampullae of the vas" EXACT PLURAL [] +synonym: "ampullary gland of seminal duct" EXACT [] +xref: EMAPA:35123 +xref: http://linkedlifedata.com/resource/umls/id/C2698103 +xref: MA:0000400 +xref: NCIT:C77955 +xref: UMLS:C2698103 {source="ncithesaurus:Ampullary_Gland"} +is_a: UBERON:0005399 {source="MA"} ! male reproductive gland +relationship: part_of UBERON:0001000 ! vas deferens + +[Term] +id: UBERON:0009646 +name: lumbar sympathetic nerve trunk +def: "A sympathetic nerve trunk that is part of a lower back." [OBOL:automatic] +synonym: "lumbar part of sympathetic trunk" RELATED [FMA:6263] +synonym: "lumbar sympathetic chain" RELATED [FMA:6263] +synonym: "lumbar sympathetic trunk" EXACT [FMA:6263] +xref: EMAPA:37655 {source="MA:th"} +xref: FMA:6263 +xref: http://linkedlifedata.com/resource/umls/id/C1708762 +xref: http://www.snomedbrowser.com/Codes/Details/280534006 +xref: MA:0001163 +xref: NCIT:C52828 +xref: UMLS:C1708762 {source="ncithesaurus:Lumbar_Sympathetic_Nerve_Trunk"} +is_a: UBERON:0004295 ! sympathetic nerve trunk +intersection_of: UBERON:0004295 ! sympathetic nerve trunk +intersection_of: part_of UBERON:0005462 ! lower back +relationship: part_of UBERON:0005462 ! lower back + +[Term] +id: UBERON:0009647 +name: tympanic membrane epithelium +def: "One of the two epithelia which make up the tympanic membrane (along with the fibrous layer)" [http://www.ncbi.nlm.nih.gov/pubmed/11237469, https://orcid.org/0000-0002-6601-2165] +synonym: "tympanic epithelium" EXACT [MA:0001224] +synonym: "tympanic membrane epithelial layer" EXACT [] +xref: EMAPA:19064 +xref: http://linkedlifedata.com/resource/umls/id/C1711401 +xref: http://www.snomedbrowser.com/Codes/Details/70839004 +xref: MA:0001224 +xref: NCIT:C49308 +xref: UMLS:C1711401 {source="ncithesaurus:Tympanic_Epithelium"} +is_a: UBERON:0010071 ! layer of tympanic membrane +is_a: UBERON:0015813 ! middle ear epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002364 ! tympanic membrane +disjoint_from: UBERON:0010070 ! intermediate layer of tympanic membrane + +[Term] +id: UBERON:0009648 +name: eyelid subcutaneous connective tissue +def: "A eyelid connective tissue that is part of a hypodermis." [OBOL:automatic] +synonym: "superficial fascia of eyelid" RELATED [FMA:63975] +xref: EMAPA:37533 {source="MA:th"} +xref: FMA:63975 +xref: http://linkedlifedata.com/resource/umls/id/C1707991 +xref: MA:0001252 +xref: NCIT:C49226 +xref: UMLS:C1707991 {source="ncithesaurus:Eyelid_Subcutaneous_Connective_Tissue"} +is_a: UBERON:0003581 ! eyelid connective tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0003581 ! eyelid connective tissue +intersection_of: part_of UBERON:0002072 ! hypodermis +relationship: adjacent_to UBERON:0001457 ! skin of eyelid +relationship: part_of UBERON:0002072 ! hypodermis + +[Term] +id: UBERON:0009650 +name: cortical arch of kidney +def: "The portions of renal substance (cortex) intervening between the bases of the pyramids and the capsule of the kidney." [http://www.medilexicon.com/medicaldictionary.php?t=5968] +synonym: "cortex proper of kidney" RELATED [FMA:17876] +synonym: "cortical arches of kidney" RELATED PLURAL [] +synonym: "renal cortex proper" EXACT [FMA:17876] +synonym: "renal cortical arch" EXACT [FMA:17876] +xref: EMAPA:37486 {source="MA:th"} +xref: FMA:17876 +xref: http://linkedlifedata.com/resource/umls/id/C1511525 +xref: MA:0001650 +xref: NCIT:C32385 +xref: UMLS:C1511525 {source="ncithesaurus:Cortical_Arch"} +is_a: UBERON:0000061 ! anatomical structure +relationship: part_of UBERON:0002189 {source="MA"} ! outer cortex of kidney + +[Term] +id: UBERON:0009651 +name: nephron tubule basement membrane +def: "A basement membrane that is part of a nephron tubule." [OBOL:automatic] +synonym: "kidney tubule basement membrane" EXACT [MA:0001680] +synonym: "renal tubular basement membrane" EXACT [] +synonym: "renal tubule basement membrane" EXACT [MA:0001680] +xref: EMAPA:37490 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1709901 +xref: http://www.snomedbrowser.com/Codes/Details/245251000 +xref: MA:0001680 +xref: NCIT:C49273 +xref: UMLS:C1709901 {source="ncithesaurus:Renal_Tubule_Basement_Membrane"} +is_a: UBERON:0005769 ! basement membrane of epithelium +intersection_of: UBERON:0005769 ! basement membrane of epithelium +intersection_of: part_of UBERON:0001231 ! nephron tubule +relationship: part_of UBERON:0004810 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! nephron tubule epithelium + +[Term] +id: UBERON:0009652 +name: bronchus basement membrane +def: "A basement membrane that is part of a bronchus." [OBOL:automatic] +synonym: "bronchial basement membrane" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: EMAPA:37809 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1707051 +xref: MA:0001832 +xref: NCIT:C49208 +xref: UMLS:C1707051 {source="ncithesaurus:Bronchus_Basement_Membrane"} +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0015329 ! respiratory system basement membrane +intersection_of: UBERON:0005769 ! basement membrane of epithelium +intersection_of: part_of UBERON:0002185 ! bronchus +relationship: part_of UBERON:0002031 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! epithelium of bronchus + +[Term] +id: UBERON:0009653 +name: trachea basement membrane +def: "A basement membrane that is part of a trachea." [OBOL:automatic] +xref: EMAPA:37552 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1710455 +xref: MA:0001854 +xref: NCIT:C49302 +xref: UMLS:C1710455 {source="ncithesaurus:Trachea_Basement_Membrane"} +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015329 ! respiratory system basement membrane +intersection_of: UBERON:0005769 ! basement membrane of epithelium +intersection_of: part_of UBERON:0003126 ! trachea +relationship: part_of UBERON:0001901 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! epithelium of trachea +relationship: part_of UBERON:0009644 {source="MA-modified"} ! trachea non-cartilage connective tissue + +[Term] +id: UBERON:0009654 +name: alveolar artery +def: "A branch of the maxillary artery that is found in the gingiva, premolars, and molars." [ncithesaurus:Alveolar_Artery] +xref: EMAPA:37069 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1706783 +xref: MA:0001913 +xref: NCIT:C52848 +xref: UMLS:C1706783 {source="ncithesaurus:Alveolar_Artery"} +is_a: UBERON:0001637 {source="MA"} ! artery +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: branching_part_of UBERON:0001616 ! maxillary artery +relationship: part_of UBERON:0001616 ! maxillary artery +relationship: part_of UBERON:0011595 ! jaw region + +[Term] +id: UBERON:0009655 +name: auricular artery +def: "An artery that supplies oxygenated blood to the ear." [ncithesaurus:Auricular_Artery] +xref: EMAPA:37072 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1706858 +xref: MA:0001918 +xref: NCIT:C52849 +xref: UMLS:C1706858 {source="ncithesaurus:Auricular_Artery"} +is_a: UBERON:0001637 ! artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0001691 ! external ear +relationship: supplies UBERON:0001691 ! external ear + +[Term] +id: UBERON:0009656 +name: obsolete frontal artery +comment: insufficiently defined +is_obsolete: true +consider: MA:0001960 + +[Term] +id: UBERON:0009657 +name: artery of lip +synonym: "labial artery" EXACT [MA:0001987] +xref: EMAPA:37092 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1708633 +xref: MA:0001987 +xref: NCIT:C52947 +xref: UMLS:C1708633 {source="ncithesaurus:Labial_Artery"} +is_a: UBERON:0001637 ! artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0001833 ! lip +relationship: supplies UBERON:0001833 ! lip + +[Term] +id: UBERON:0009658 +name: pancreaticoduodenal artery +def: "." [http://en.wikipedia.org/wiki/Pancreaticoduodenal_artery] +synonym: "arteriae pancreaticoduodenales" EXACT LATIN [] +synonym: "pancreatico-duodenal artery" EXACT [MA:0002013] +xref: EMAPA:36529 +xref: http://linkedlifedata.com/resource/umls/id/C1709455 +xref: MA:0002013 +xref: NCIT:C52992 +xref: Pancreaticoduodenal:artery +xref: UMLS:C1709455 {source="ncithesaurus:Pancreatico-Duodenal_Artery"} +is_a: UBERON:0001637 {source="MA"} ! artery + +[Term] +id: UBERON:0009659 +name: spermatic artery +def: "A branch of the abdominal aorta that supplies oxygenated blood to the testis." [ncithesaurus:Spermatic_Artery] +xref: http://linkedlifedata.com/resource/umls/id/C0226409 +xref: MA:0002040 +xref: NCIT:C33581 +xref: UMLS:C0226409 {source="ncithesaurus:Spermatic_Artery"} +is_a: UBERON:0001187 ! testicular artery + +[Term] +id: UBERON:0009660 +name: obsolete adrenal vein +is_obsolete: true +replaced_by: UBERON:0001146 + +[Term] +id: UBERON:0009661 +name: midbrain nucleus +def: "Nucleus located in the midbrain." [ZFIN:curator] +xref: http://www.snomedbrowser.com/Codes/Details/279285003 +xref: TAO:0002209 +xref: ZFA:0001665 +is_a: UBERON:0002308 ! nucleus of brain +intersection_of: UBERON:0002308 ! nucleus of brain +intersection_of: part_of UBERON:0001891 ! midbrain +relationship: part_of UBERON:0001891 ! midbrain + +[Term] +id: UBERON:0009662 +name: hindbrain nucleus +def: "Nucleus located within the hindbrain." [ZFIN:curator] +xref: TAO:0002177 +xref: ZFA:0001658 +is_a: UBERON:0002308 ! nucleus of brain +intersection_of: UBERON:0002308 ! nucleus of brain +intersection_of: part_of UBERON:0002028 ! hindbrain +relationship: part_of UBERON:0002028 ! hindbrain + +[Term] +id: UBERON:0009663 +name: telencephalic nucleus +def: "A nucleus of brain that is part of a telencephalon." [OBOL:automatic] +xref: TAO:0002178 +xref: ZFA:0001660 +is_a: UBERON:0002308 ! nucleus of brain +intersection_of: UBERON:0002308 ! nucleus of brain +intersection_of: part_of UBERON:0001893 ! telencephalon +relationship: part_of UBERON:0001893 ! telencephalon + +[Term] +id: UBERON:0009664 +name: gut mesentery +synonym: "peritoneal cavity mesentary" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "peritoneal mesentary" RELATED [http://orcid.org/0000-0002-6601-2165] +xref: EHDAA2:0004566 +xref: EMAPA:32911 +xref: MA:0003203 +is_a: UBERON:0002095 ! mesentery +relationship: located_in UBERON:0001179 {source="EHDAA2"} ! peritoneal cavity + +[Term] +id: UBERON:0009668 +name: ventral mesentery +def: "Ventral mesentery is the part of the peritoneum closest to the navel." [http://en.wikipedia.org/wiki/Ventral_mesentery] +xref: EHDAA2:0004569 +xref: http://www.snomedbrowser.com/Codes/Details/361430000 +xref: Ventral:mesentery +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0009664 {source="EHDAA2"} ! gut mesentery + +[Term] +id: UBERON:0009669 +name: embryonic cloacal lumen +def: "An anatomical space that surrounded_by a embryonic cloaca." [OBOL:automatic] +xref: EHDAA2:0004586 +is_a: UBERON:0012463 ! cloacal lumen +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0000163 ! embryonic cloaca +relationship: luminal_space_of UBERON:0000163 ! embryonic cloaca +relationship: part_of UBERON:0000163 ! embryonic cloaca +relationship: surrounded_by UBERON:0009846 ! embryonic cloacal epithelium + +[Term] +id: UBERON:0009670 +name: rectal lumen +def: "An anatomical space that surrounded_by a rectum." [OBOL:automatic] +synonym: "lumen of rectum" EXACT [FMA:14598] +xref: EHDAA2:0004587 +xref: EMAPA:18388 +xref: FMA:14598 +xref: http://www.snomedbrowser.com/Codes/Details/259740004 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0001052 ! rectum +relationship: develops_from UBERON:0009669 {source="EHDAA2"} ! embryonic cloacal lumen +relationship: luminal_space_of UBERON:0001052 ! rectum +relationship: part_of UBERON:0001052 ! rectum +relationship: part_of UBERON:0012465 {source="cjm"} ! lumen of terminal part of digestive tract + +[Term] +id: UBERON:0009671 +name: nasal fin +def: "The nasal fin is an epithelial seam that develops by fusion between the epithelial linings of the medial and lateral nasal swellings. Shortly after its formation the nasal fin regresses and is replaced by mesenchyme, with exception of its most posterior portion which remains as the bucconasal membrane." [https://doi.org/10.1002/aja.1001500308] +xref: EHDAA2:0004548 +xref: FMA:295940 +is_a: UBERON:0005384 ! nasal cavity epithelium +is_a: UBERON:0011642 ! oral epithelium from ectoderm +relationship: existence_ends_during UBERON:0000068 ! embryo stage + +[Term] +id: UBERON:0009672 +name: oronasal membrane +def: "The oronasal membrane separates the oral cavity and nasal cavity." [http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter24/custom3/deluxe-content.html] +synonym: "bucconasal membrane" EXACT [EHDAA:7840] +xref: EHDAA2:0000188 +xref: EHDAA:7840 +xref: EHDAA:7984 +xref: FMA:295942 +is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0009671 {notes="posterior portion", source="EHDAA2"} ! nasal fin +relationship: part_of UBERON:0000166 {source="EHDAA2"} ! oral opening +relationship: part_of UBERON:0005384 {source="EHDAA2"} ! nasal cavity epithelium + +[Term] +id: UBERON:0009673 +name: accessory XI nerve cranial component +comment: Thus in contemporary discussions of the accessory nerve, the common practice is to dismiss the cranial part altogether, referring to the accessory nerve specifically as the spinal accessory nerve. +xref: EHDAA2:0000107 +xref: EHDAA:5574 +xref: EMAPA:17266 +xref: MA:0001089 +xref: VHOG:0001174 +is_a: UBERON:0001785 ! cranial nerve +relationship: branching_part_of UBERON:0002019 ! accessory XI nerve +relationship: part_of UBERON:0001759 ! vagus nerve +relationship: part_of UBERON:0002019 {source="MA"} ! accessory XI nerve + +[Term] +id: UBERON:0009674 +name: accessory XI nerve spinal component +def: "The spinal root of accessory nerve (or part) is firm in texture, and its fibers arise from the motor cells in the lateral part of the anterior column of the gray substance of the medulla spinalis as low as the fifth cervical nerve. Passing through the lateral funiculus of the medulla spinalis, they emerge on its surface and unite to form a single trunk, which ascends between the ligamentum denticulatum and the posterior roots of the spinal nerves; enters the skull through the foramen magnum, and is then directed to the jugular foramen, through which it passes, lying in the same sheath of dura mater as the vagus, but separated from it by a fold of the arachnoid. In the jugular foramen, it receives one or two filaments from the cranial part of the nerve, or else joins it for a short distance and then separates from it again. As its exit from the jugular foramen, it runs backward in front of the internal jugular vein in 66.6 per cent. of cases, and behind in it 33.3 per cent. The nerve then descends obliquely behind the Digastricus and Stylohyoideus to the upper part of the Sternocleidomastoideus; it pierces this muscle, and courses obliquely across the posterior triangle of the neck, to end in the deep surface of the Trapezius. As it traverses the Sternocleidomastoideus it gives several filaments to the muscle, and joins with branches from the second cervical nerve. In the posterior triangle it unites with the second and third cervical nerves, while beneath the Trapezius it forms a plexus with the third and fourth cervical nerves, and from this plexus fibers are distributed to the muscle." [http://en.wikipedia.org/wiki/Spinal_root_of_accessory_nerve] +synonym: "spinal part of the accessory nerve" EXACT [NeuroNames:1709] +xref: EHDAA2:0000108 +xref: EHDAA:5576 +xref: EMAPA:17267 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1709 +xref: http://en.wikipedia.org/wiki/Spinal_root_of_accessory_nerve +xref: MA:0001090 +xref: VHOG:0001115 +is_a: UBERON:0001780 ! spinal nerve +relationship: branching_part_of UBERON:0002019 ! accessory XI nerve +relationship: part_of UBERON:0002019 {source="EHDAA2"} ! accessory XI nerve + +[Term] +id: UBERON:0009675 +name: chorda tympani branch of facial nerve +def: "The chorda tympani is a nerve that branches from the facial nerve (cranial nerve VII) inside the facial canal, just before the facial nerve exits the skull via the stylomastoid foramen. Chorda tympani is a branch of the facial nerve (the seventh cranial nerve) that serves the taste buds in the front of the tongue, runs through the middle ear, and carries taste messages to the brain. The chorda tympani is part of one of three cranial nerves that are involved in taste. The taste system involves a complicated feedback loop, with each nerve acting to inhibit the signals of other nerves. The chorda tympani appears to exert a particularly strong inhibitory influence on other taste nerves, as well as on pain fibers in the tongue. When the chorda tympani is damaged, its inhibitory function is disrupted, leading to less inhibited activity in the other nerves." [http://en.wikipedia.org/wiki/Chorda_tympani] +synonym: "chorda tympani" EXACT [FMA:53228] +synonym: "chorda tympani nerve" RELATED [http://en.wikipedia.org/wiki/Chorda_tympani] +synonym: "corda tympani nerve" RELATED [http://en.wikipedia.org/wiki/Chorda_tympani] +synonym: "facial VII nerve chorda tympani branch" EXACT [MA:0001092] +synonym: "nervus corda tympani" RELATED [http://en.wikipedia.org/wiki/Chorda_tympani] +synonym: "parasympathetic root of submandibular ganglion" EXACT [FMA:53228] +synonym: "radix parasympathica ganglii submandibularis" EXACT [FMA:TA] +synonym: "tympanic cord" RELATED [http://en.wikipedia.org/wiki/Chorda_tympani] +xref: Chorda:tympani +xref: EHDAA2:0000490 +xref: EHDAA:3719 +xref: EMAPA:18217 +xref: FMA:53228 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1434 +xref: http://www.snomedbrowser.com/Codes/Details/280274004 +xref: MA:0001092 +xref: VHOG:0001343 +is_a: UBERON:0001785 ! cranial nerve +relationship: branching_part_of UBERON:0001647 {source="EHDAA2"} ! facial nerve +relationship: innervates UBERON:0001727 ! taste bud +relationship: part_of UBERON:0001647 ! facial nerve + +[Term] +id: UBERON:0009676 +name: early telencephalic vesicle +subset: efo_slim +synonym: "early telencephalic ventricle" RELATED [] +synonym: "early telencephalic vesicle" EXACT [EHDAA2:0001981] +xref: EFO:0003562 +xref: EHDAA2:0001981 +xref: EHDAA:1993 +xref: EHDAA:2671 +xref: EMAPA:16914 +is_a: UBERON:0013150 ! future brain vesicle +relationship: develops_from UBERON:0006284 {source="EHDAA2"} ! early prosencephalic vesicle +relationship: part_of UBERON:0001893 {source="EHDAA2"} ! telencephalon + +[Term] +id: UBERON:0009678 +name: tooth row +def: "Anatomical cluster consisting of adjacent teeth constituting a row." [ZFIN:curator] +synonym: "dental arcade" EXACT [FMA:59415] +synonym: "row of teeth" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "tooth rows" EXACT PLURAL [ZFA:0001642] +xref: FMA:59415 +xref: TAO:0001667 +xref: ZFA:0001642 +is_a: UBERON:0003672 ! dentition +is_a: UBERON:0034926 ! anatomical row +intersection_of: UBERON:0034926 ! anatomical row +intersection_of: has_member UBERON:0001091 ! calcareous tooth + +[Term] +id: UBERON:0009679 +name: set of lower jaw teeth +def: "A tooth row that is part of a skeleton of lower jaw." [OBOL:automatic] +subset: pheno_slim +synonym: "arcus dentalis inferior" EXACT LATIN [FMA:TA] +synonym: "lower dental arcade" EXACT [FMA:55635] +synonym: "lower jaw teeth" EXACT [EHDAA2:0001029] +synonym: "mandibular dental arcade" RELATED [FMA:55635] +synonym: "set of all lower teeth" EXACT [FMA:55635] +xref: EHDAA2:0001029 +xref: FMA:55635 +is_a: UBERON:0009678 ! tooth row +intersection_of: UBERON:0009678 ! tooth row +intersection_of: part_of UBERON:0003278 ! skeleton of lower jaw +relationship: part_of UBERON:0003278 ! skeleton of lower jaw + +[Term] +id: UBERON:0009680 +name: set of upper jaw teeth +def: "A tooth row that is part of a skeleton of upper jaw." [OBOL:automatic] +subset: pheno_slim +synonym: "arcus dentalis superior" EXACT LATIN [FMA:TA] +synonym: "maxillary dental arcade" RELATED [FMA:55634] +synonym: "set of all upper teeth" EXACT [FMA:55634] +synonym: "upper dental arcade" EXACT [FMA:55634] +synonym: "upper jaw teeth" EXACT [EHDAA2:0002129] +xref: EHDAA2:0002129 +xref: FMA:55634 +is_a: UBERON:0009678 ! tooth row +intersection_of: UBERON:0009678 ! tooth row +intersection_of: part_of UBERON:0003277 ! skeleton of upper jaw +relationship: part_of UBERON:0003277 ! skeleton of upper jaw + +[Term] +id: UBERON:0009687 +name: middle cardiac vein +def: "The middle cardiac vein commences at the apex of the heart, ascends in the posterior longitudinal sulcus, and ends in the coronary sinus near its right extremity." [http://en.wikipedia.org/wiki/Middle_cardiac_vein] +synonym: "lesser cardiac vein" EXACT [FMA:4713] +synonym: "posterior interventricular vein" EXACT [FMA:4713] +synonym: "vena cardiaca media" RELATED LATIN [http://en.wikipedia.org/wiki/Middle_cardiac_vein] +xref: EHDAA2:0004509 +xref: FMA:4713 +xref: http://en.wikipedia.org/wiki/Middle_cardiac_vein +xref: http://linkedlifedata.com/resource/umls/id/C0226660 +xref: http://www.snomedbrowser.com/Codes/Details/277729002 +xref: NCIT:C12880 +xref: UMLS:C0226660 {source="ncithesaurus:Middle_Cardiac_Vein"} +is_a: UBERON:0004148 {source="FMA"} ! cardiac vein + +[Term] +id: UBERON:0009688 +name: posterior inferior cerebellar artery +def: "The posterior inferior cerebellar artery (PICA), the largest branch of the vertebral, is one of the three main arterial blood supplies for the cerebellum." [http://en.wikipedia.org/wiki/Posterior_inferior_cerebellar_artery] +synonym: "posterior inferior cerebellar artery" EXACT [EHDAA2:0000660] +xref: EHDAA2:0000660 +xref: FMA:50518 +xref: http://en.wikipedia.org/wiki/Posterior_inferior_cerebellar_artery +xref: http://linkedlifedata.com/resource/umls/id/C0149573 +xref: http://www.snomedbrowser.com/Codes/Details/244212001 +xref: NCIT:C33362 +xref: UMLS:C0149573 {source="ncithesaurus:Posterior_Inferior_Cerebellar_Artery"} +is_a: UBERON:0035307 ! branch of vertebral artery +disjoint_from: UBERON:0009689 {source="lexical"} ! anterior inferior cerebellar artery +relationship: develops_from UBERON:0001535 {source="EHDAA2"} ! vertebral artery + +[Term] +id: UBERON:0009689 +name: anterior inferior cerebellar artery +def: "A basilar artery branch that supplies the anterior portion of the inferior surface of the cerebellum." [ncithesaurus:Anterior_Inferior_Cerebellar_Artery] +xref: EHDAA2:0000587 +xref: EMAPA:37070 {source="MA:th"} +xref: FMA:50544 +xref: http://en.wikipedia.org/wiki/Anterior_inferior_cerebellar_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226245 +xref: http://www.snomedbrowser.com/Codes/Details/244213006 +xref: NCIT:C32091 +xref: UMLS:C0226245 {source="ncithesaurus:Anterior_Inferior_Cerebellar_Artery"} +is_a: UBERON:0003472 ! cerebellar artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0035489 ! branch of basilar artery +relationship: develops_from UBERON:0001532 {source="EHDAA2"} ! internal carotid artery + +[Term] +id: UBERON:0009692 +name: lumen of pharyngotympanic tube +def: "A organ cavity that is part of a pharyngotympanic tube." [OBOL:automatic] +synonym: "auditory tube lumen" EXACT [EHDAA2:0004118] +synonym: "lumen of auditory tube" EXACT [FMA:60079] +synonym: "lumen of eustachian tube" EXACT [FMA:60079] +synonym: "pharyngotympanic tube lumen" EXACT [FMA:60079] +xref: EHDAA2:0004118 +xref: FMA:60079 +is_a: UBERON:0002558 ! organ cavity +is_a: UBERON:0005082 {source="EHDAA2"} ! tube lumen +intersection_of: UBERON:0002558 ! organ cavity +intersection_of: part_of UBERON:0002393 ! pharyngotympanic tube +relationship: continuous_with UBERON:0010060 ! pharyngeal opening of pharyngotympanic tube +relationship: developmentally_replaces UBERON:0005625 {source="EHDAA2/Kardong"} ! tubotympanic recess lumen +relationship: part_of UBERON:0002393 ! pharyngotympanic tube +relationship: surrounded_by UBERON:0010062 {source="cjm"} ! pharyngotympanic tube epithelium + +[Term] +id: UBERON:0009695 +name: epithelium of laryngopharynx +def: "A epithelium that is part of a hypopharynx." [OBOL:automatic] +synonym: "epithelium of laryngeal pharynx" EXACT [FMA:62454] +synonym: "laryngopharynx epithelium" EXACT [FMA:62454] +xref: EHDAA2:0004575 +xref: FMA:62454 +is_a: UBERON:0003351 ! pharyngeal epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001051 ! hypopharynx +relationship: part_of UBERON:0001051 {source="EHDAA2"} ! hypopharynx + +[Term] +id: UBERON:0009697 +name: epithelium of appendix +def: "A epithelium that is part of a vermiform appendix." [OBOL:automatic] +synonym: "appendix epithelium" EXACT [FMA:63581] +synonym: "epithelium of vermiform appendix" EXACT [FMA:63581] +xref: CALOHA:TS-2062 +xref: EHDAA2:0004561 +xref: FMA:63581 +is_a: UBERON:0005636 ! caecum epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001154 ! vermiform appendix +relationship: part_of UBERON:0004989 ! mucosa of appendix + +[Term] +id: UBERON:0009708 +name: dorsal pancreas +subset: organ_slim +synonym: "pancreatis dorsalis" RELATED [] +xref: EHDAA2:0001371 +is_a: UBERON:0002365 {source="EHDAA2"} ! exocrine gland +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0005177 ! trunk region element +relationship: develops_from UBERON:0010375 {source="EHDAA2"} ! pancreas dorsal primordium +relationship: has_developmental_contribution_from UBERON:0003923 {source="cjm"} ! dorsal pancreatic bud +relationship: part_of UBERON:0001264 {source="EHDAA2"} ! pancreas + +[Term] +id: UBERON:0009709 +name: ventral pancreas +subset: organ_slim +synonym: "pancreatis ventralis" RELATED [] +xref: EHDAA2:0001393 +is_a: UBERON:0002365 {source="EHDAA2"} ! exocrine gland +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0005177 ! trunk region element +relationship: develops_from UBERON:0010376 {source="EHDAA2"} ! pancreas ventral primordium +relationship: has_developmental_contribution_from UBERON:0003924 {source="cjm"} ! ventral pancreatic bud +relationship: part_of UBERON:0001264 {source="EHDAA2"} ! pancreas + +[Term] +id: UBERON:0009712 +name: endocardium of right ventricle +def: "Any endocardium that is part of the right ventricle of the heart." [http://orcid.org/0000-0002-6601-2165] +synonym: "endocardial lining of right ventricle" RELATED [EMAPA:17341] +synonym: "right ventricle endocardial tissue" RELATED [VHOG:0001235] +synonym: "right ventricle endocardium" EXACT [VHOG:0001235] +synonym: "right ventricular endocardium" EXACT [FMA:9536] +xref: EHDAA2:0002188 +xref: EMAPA:17341 +xref: FMA:9536 +xref: http://www.snomedbrowser.com/Codes/Details/8911002 +xref: NCIT:C102343 +xref: VHOG:0001235 +is_a: UBERON:0001081 ! endocardium of ventricle +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001081 ! endocardium of ventricle +intersection_of: part_of UBERON:0002080 ! heart right ventricle +relationship: attaches_to UBERON:0006567 {source="FMA"} ! right ventricle myocardium +relationship: develops_from UBERON:0004706 {source="EHDAA2"} ! bulbus cordis +relationship: part_of UBERON:0002080 ! heart right ventricle + +[Term] +id: UBERON:0009713 +name: endocardium of left ventricle +def: "Any endocardium that is part of the left ventricle of the heart." [http://orcid.org/0000-0002-6601-2165] +synonym: "endocardial lining of left ventricle" RELATED [EMAPA:17338] +synonym: "left ventricle endocardial tissue" RELATED [VHOG:0001233] +synonym: "left ventricle endocardium" EXACT [VHOG:0001233] +synonym: "left ventricular endocardium" EXACT [FMA:9559] +xref: EHDAA2:0002182 +xref: EMAPA:17338 +xref: FMA:9559 +xref: http://www.snomedbrowser.com/Codes/Details/191004004 +xref: VHOG:0001233 +is_a: UBERON:0001081 ! endocardium of ventricle +intersection_of: UBERON:0001081 ! endocardium of ventricle +intersection_of: part_of UBERON:0002084 ! heart left ventricle +relationship: attaches_to UBERON:0006566 {source="FMA"} ! left ventricle myocardium +relationship: part_of UBERON:0002084 ! heart left ventricle + +[Term] +id: UBERON:0009714 +name: intermaxillary process +def: "The primordial mass of tissue formed by the merging of the medial nasal prominences of the embryo; it contributes to the intermaxillary portion of the upper jaw, the prolabial portion of the upper lip, and the primary palate." [http://www.medilexicon.com/medicaldictionary.php?s=intermaxillary+segment] +synonym: "globular process" RELATED DEPRECATED [http://en.wikipedia.org/wiki/Intermaxillary_segment] +synonym: "globular processes of his" RELATED DEPRECATED [http://en.wikipedia.org/wiki/Intermaxillary_segment] +synonym: "intermaxillary segment" RELATED [http://en.wikipedia.org/wiki/Intermaxillary_segment] +xref: EHDAA2:0000868 +xref: EHDAA:7856 +xref: FMA:295872 +xref: Intermaxillary:segment +is_a: UBERON:0009292 {source="EHDAA2-modified"} ! embryonic nasal process +relationship: develops_from UBERON:0004067 {notes="inconsistent", source="EHDAA2"} ! lateral nasal prominence +relationship: develops_from UBERON:0004068 {source="EHDAA2"} ! medial nasal prominence + +[Term] +id: UBERON:0009715 +name: stomodeal lumen +def: "An anatomical cavity that surrounded_by a stomodeum." [OBOL:automatic] +synonym: "lumen of stomatodaeum" EXACT [] +synonym: "lumen of stomodeum" EXACT [] +synonym: "stomatodeal cavity" EXACT [] +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0000930 ! stomodeum +relationship: luminal_space_of UBERON:0000930 ! stomodeum +relationship: part_of UBERON:0000930 ! stomodeum + +[Term] +id: UBERON:0009716 +name: cupular organ +def: "Epithelial sense organ containing the cupula housing a gelatinous material elongated from the basement of the organ toward the atrial cavity. The basement of the cupular organ consists of two cell types: sensory cells and support cell" [https://doi.org/10.2108/zsj.27.842] +is_a: UBERON:0000020 ! sense organ + +[Term] +id: UBERON:0009717 +name: coronal organ +def: "Mechanoreceptor organ found in oral siphon of botryllid ascidians, made of hair cells, similar to the vertebrate octavolateralis system. A possible candidate of the vertebrate lateral line." [https://doi.org/10.1002/jez.b.21013] +subset: organ_slim +xref: BSA:0000122 +is_a: UBERON:0000020 ! sense organ +relationship: part_of UBERON:0009720 ! oral siphon + +[Term] +id: UBERON:0009718 +name: neurohypophyseal duct +def: "Embryonic duct that is the rudiment of cerebral ganglion and and neural gland of adult in the ascidians." [https://doi.org/10.1002/jez.b.21013] +comment: Homology: candidate homolog for both neural crest and for the combined olfactory and adenohypophyseal placodes (Burighel et al., 2003; Manni et al., 2004a). Development: During formation of the adult ascidian, the ectodermal neurohypophyseal duct fuses with an evagination of the pharynx to form the neural gland rudiment +is_a: UBERON:0000058 ! duct + +[Term] +id: UBERON:0009719 +name: tunicate siphon +def: "tubular appendage for drawing or ejecting fluids" [http://orcid.org/0000-0002-6601-2165] +synonym: "siphon" EXACT [BTO:0002056] +xref: BTO:0002056 +is_a: UBERON:0000026 ! appendage +relationship: develops_from UBERON:0009894 ! siphon primordium + +[Term] +id: UBERON:0009720 +name: oral siphon +synonym: "anterior buccal siphon" EXACT [ISBN:0030229073] +synonym: "branchial siphon" RELATED [] +synonym: "buccal siphon" EXACT [ISBN:0030229073] +synonym: "pharyngeal siphon" RELATED [] +xref: BSA:0000106 +is_a: UBERON:0009719 ! tunicate siphon +relationship: develops_from UBERON:0009896 ! oral siphon primordia + +[Term] +id: UBERON:0009721 +name: atrial siphon +xref: BSA:0000051 +is_a: UBERON:0009719 ! tunicate siphon +relationship: develops_from UBERON:0009895 ! atrial siphon primordia + +[Term] +id: UBERON:0009722 +name: entire pharyngeal arch endoderm +synonym: "pharyngeal arch endoderm" RELATED [EHDAA2:0004621] +xref: EHDAA2:0004621 +xref: EMAPA:32754 +xref: FMA:293087 +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0015833 ! foregut epithelium +relationship: part_of UBERON:0008814 ! pharyngeal arch system + +[Term] +id: UBERON:0009731 +name: sublaminar layers S3 or S4 +def: "One of sublaminar layers S3 or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] +xref: CP:0001040 +is_a: UBERON:0008921 ! substratum of layer of retina +union_of: UBERON:0008924 ! sublaminar layer S3 +union_of: UBERON:0008925 ! sublaminar layer S4 +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan + +[Term] +id: UBERON:0009732 +name: sublaminar layers S1 or S2 or S5 +def: "One of sublaminar layers S1, S2, or S5." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] +xref: CP:0001041 +is_a: UBERON:0008921 ! substratum of layer of retina +union_of: UBERON:0008922 ! sublaminar layer S1 +union_of: UBERON:0008923 ! sublaminar layer S2 +union_of: UBERON:0008926 ! sublaminar layer S5 +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan + +[Term] +id: UBERON:0009733 +name: sublaminar layers S1 or S2 or S3 +def: "One of sublaminar layers S1, S2, or S3." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] +xref: CP:0001042 +is_a: UBERON:0008921 ! substratum of layer of retina +union_of: UBERON:0008922 ! sublaminar layer S1 +union_of: UBERON:0008923 ! sublaminar layer S2 +union_of: UBERON:0008924 ! sublaminar layer S3 +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan + +[Term] +id: UBERON:0009734 +name: sublaminar layers S2 or S3 or S4 +def: "One of sublaminar layers S2, S3, or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] +xref: CP:0001043 +is_a: UBERON:0008921 ! substratum of layer of retina +union_of: UBERON:0008923 ! sublaminar layer S2 +union_of: UBERON:0008924 ! sublaminar layer S3 +union_of: UBERON:0008925 ! sublaminar layer S4 +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan + +[Term] +id: UBERON:0009735 +name: sublaminar layers S1 or S3 or S4 +def: "One of sublaminar layers S1, S3, or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] +xref: CP:0001044 +is_a: UBERON:0008921 ! substratum of layer of retina +union_of: UBERON:0008922 ! sublaminar layer S1 +union_of: UBERON:0008924 ! sublaminar layer S3 +union_of: UBERON:0008925 ! sublaminar layer S4 +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan + +[Term] +id: UBERON:0009736 +name: sublaminar layers S3 or S4 or S5 +def: "One of sublaminar layers S3, S4, or S5." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] +xref: CP:0001045 +is_a: UBERON:0008921 ! substratum of layer of retina +union_of: UBERON:0008924 ! sublaminar layer S3 +union_of: UBERON:0008925 ! sublaminar layer S4 +union_of: UBERON:0008926 ! sublaminar layer S5 +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan + +[Term] +id: UBERON:0009737 +name: sublaminar layers S1 or S2 or S3 or S4 +def: "One of sublaminar layers S1, S2, S3, or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] +xref: CP:0001046 +is_a: UBERON:0008921 ! substratum of layer of retina +union_of: UBERON:0008922 ! sublaminar layer S1 +union_of: UBERON:0008923 ! sublaminar layer S2 +union_of: UBERON:0008924 ! sublaminar layer S3 +union_of: UBERON:0008925 ! sublaminar layer S4 +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan + +[Term] +id: UBERON:0009738 +name: border of sublaminar layers S1 and S2 +def: "The region extending out from the boundary between layers S1 and S2." [GOC:plr, https://github.com/obophenotype/uberon/issues/31, https://orcid.org/0000-0002-6601-2165] +xref: CP:0001038 +is_a: UBERON:0009740 ! border between sublaminar layers +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan +relationship: part_of UBERON:0008927 ! sublaminar layers S1 or S2 + +[Term] +id: UBERON:0009739 +name: border of sublaminar layers S3 and S4 +def: "The region extending out from the boundary between sublaminar layers S3 and S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31, https://orcid.org/0000-0002-6601-2165] +xref: CP:0001039 +is_a: UBERON:0009740 ! border between sublaminar layers +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan +relationship: part_of UBERON:0009731 ! sublaminar layers S3 or S4 + +[Term] +id: UBERON:0009740 +name: border between sublaminar layers +def: "A region of the retina corresponding to a portion of two adjacent substratum layers." [https://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0022303 ! nervous system cell part layer +relationship: part_of UBERON:0000966 ! retina + +[Term] +id: UBERON:0009741 +name: obsolete tailbud stage +comment: Was made obsolete as it was xenopus specific +is_obsolete: true +consider: XAO:1000007 + +[Term] +id: UBERON:0009742 +name: proamniotic cavity +def: "The cavity of the developing embryo that is formed within the epiblast tissue prior to the closing of the proamniotic canal by the amniotic folds" [MP:0011197] +subset: pheno_slim +xref: EMAPA:36038 +is_a: UBERON:0002553 ! anatomical cavity +relationship: part_of UBERON:0000922 ! embryo + +[Term] +id: UBERON:0009743 +name: visceral yolk sac cavity +def: "The closed space containing the yolk, formed by the fusion of the edges of the embryonic epiblast (hypoblast) and later surrounded by the visceral yolk sac (hypoblast and visceral yolk sac mesoderm)" [MP:0011201] +subset: pheno_slim +is_a: UBERON:0007473 ! lumen of epithelial sac +is_a: UBERON:0012466 ! extraembryonic cavity +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0008852 ! visceral yolk sac +relationship: contributes_to_morphology_of UBERON:0000478 ! extraembryonic structure +relationship: luminal_space_of UBERON:0008852 ! visceral yolk sac +relationship: part_of UBERON:0008852 ! visceral yolk sac + +[Term] +id: UBERON:0009744 +name: lymph node medullary sinus +def: "The channels in the lymph node medulla that separate the medullary cords and are crossed by a reticulum of cells and fibers and bounded by littoral cells; lymph flows through the medullary sinus from the cortical sinuses and into the efferent lymphatic vessels" [MP:0011222] +comment: Lymph flows into the medullary sinuses from cortical sinuses, and into efferent lymphatic vessels. Medullary sinuses contain histiocytes (immobile macrophages) and reticular cells.[WP] +subset: pheno_slim +synonym: "lymph node medullary sinusoid" RELATED [] +synonym: "medullary sinus" BROAD [] +xref: EMAPA:37898 {source="MA:th"} +xref: FMA:312359 +is_a: UBERON:0004111 ! anatomical conduit +relationship: channel_for UBERON:0002391 ! lymph +relationship: part_of UBERON:0002007 ! medulla of lymph node + +[Term] +id: UBERON:0009745 +name: lymph node medullary cord +def: "The dense rope-like structures of lymphatic tissue located between the medullary sinuses in the medulla of a lymph node" [MP:0011224] +subset: pheno_slim +synonym: "medullary cord" BROAD [] +xref: EMAPA:37897 {source="MA:th"} +is_a: UBERON:0000064 ! organ part +relationship: adjacent_to UBERON:0009744 ! lymph node medullary sinus +relationship: part_of UBERON:0002007 ! medulla of lymph node + +[Term] +id: UBERON:0009746 +name: head fold of embryonic disc +def: "The crescent-shaped, ventrally located fold of the embryonic disc at the future cephalic end of the developing embryo" [MP:0011257] +subset: pheno_slim +synonym: "head fold" EXACT [] +xref: FMA:295585 +xref: http://www.snomedbrowser.com/Codes/Details/361453004 +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0004749 ! blastodisc + +[Term] +id: UBERON:0009747 +name: tail fold of embryonic disc +def: "The crescent-shaped, ventrally located fold of the embryonic disc at the future caudal end of the developing embryo" [MP:0011258] +subset: pheno_slim +synonym: "tail fold" EXACT [] +xref: FMA:295589 +xref: http://www.snomedbrowser.com/Codes/Details/361439004 +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0004749 ! blastodisc + +[Term] +id: UBERON:0009748 +name: cephalic neural fold +def: "The elevated margins of the neural groove that are located in the future cephalic region of the embryo" [MP:0011259] +subset: pheno_slim +xref: EMAPA:16090 +is_a: UBERON:0005062 ! neural fold + +[Term] +id: UBERON:0009749 +name: limb mesenchyme +def: "The primordial embryonic connective tissue of the developing limbs, autopods and digits, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to limb connective tissue, bone and musculature in conjunction with myotome cells." [MP:0011261] +subset: pheno_slim +synonym: "limb mesoderm" RELATED [Geisha:syn, NCBITaxon:8782] +xref: EMAPA:32705 +is_a: UBERON:0003104 ! mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0002101 ! limb +relationship: part_of UBERON:0002101 ! limb + +[Term] +id: UBERON:0009751 +name: cardiac mesenchyme +def: "The embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing cardiac structures" [MP:0011264] +subset: pheno_slim +synonym: "heart mesenchyme" EXACT [EMAPA:36438] +xref: EHDAA2:0004162 +xref: EMAPA:36438 +is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0000948 ! heart +relationship: part_of UBERON:0000948 ! heart + +[Term] +id: UBERON:0009752 +name: pancreas mesenchyme +def: "The embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing pancreas" [MP:0011265] +subset: efo_slim +subset: pheno_slim +xref: EFO:0002557 +xref: EMAPA:26220 +is_a: UBERON:0003104 ! mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001264 ! pancreas +relationship: part_of UBERON:0001264 ! pancreas + +[Term] +id: UBERON:0009753 +name: adrenal gland cortex zone +synonym: "adrenal cortical region" EXACT [FMA:69086] +synonym: "region of adrenal cortex" RELATED [FMA:69086] +xref: EMAPA:35113 +xref: FMA:69086 +xref: http://www.snomedbrowser.com/Codes/Details/68594002 +xref: MA:0001887 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0001235 {source="MA"} ! adrenal cortex + +[Term] +id: UBERON:0009754 +name: blubber +def: "A thick layer of vascularized adipose tissue found under the skin of all cetaceans, pinnipeds and sirenians." [http://en.wikipedia.org/wiki/Blubber] +xref: http://en.wikipedia.org/wiki/Blubber +xref: http://www.snomedbrowser.com/Codes/Details/83953006 +is_a: UBERON:0002190 {source="Wikipedia"} ! subcutaneous adipose tissue + +[Term] +id: UBERON:0009755 +name: spermaceti +def: "wax present in the head cavities of the sperm whale." [http://en.wikipedia.org/wiki/Spermaceti] +xref: http://en.wikipedia.org/wiki/Spermaceti +is_a: UBERON:0000463 ! organism substance +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0009756 +name: spermaceti organ +def: "An organ that contains spermaceti." [http://en.wikipedia.org/wiki/Spermaceti_organ] +subset: organ_slim +xref: Spermaceti:organ +is_a: UBERON:0000062 ! organ +intersection_of: UBERON:0000062 ! organ +intersection_of: contains UBERON:0009755 ! spermaceti +relationship: contains UBERON:0009755 ! spermaceti +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0009757 +name: ambergris +def: "A biliary secretion of the intestines of the sperm whale." [http://en.wikipedia.org/wiki/Ambergris] +xref: http://en.wikipedia.org/wiki/Ambergris +is_a: UBERON:0000463 ! organism substance + +[Term] +id: UBERON:0009758 +name: abdominal ganglion +def: "A ganglion that is part of a abdominal segment of trunk." [OBOL:automatic] +xref: http://www.snomedbrowser.com/Codes/Details/280508003 +is_a: UBERON:0005173 ! abdominal segment element +is_a: UBERON:0007134 ! trunk ganglion +intersection_of: UBERON:0000045 ! ganglion +intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk + +[Term] +id: UBERON:0009767 +name: proximal interphalangeal joint +def: "An inter-phalangeal joint that connects a proximal phalanx to either a medial or distal phalanx." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "PIJ joint" NARROW [http://en.wikipedia.org/wiki/Interphalangeal_articulations_of_the_hand] +synonym: "PIP joint" NARROW [http://en.wikipedia.org/wiki/Interphalangeal_articulations_of_the_hand] +xref: FMA:65022 +xref: NCIT:C101528 +is_a: UBERON:0006658 ! interphalangeal joint +intersection_of: UBERON:0006658 ! interphalangeal joint +intersection_of: connects UBERON:0004302 ! proximal phalanx +relationship: connects UBERON:0004301 ! middle phalanx +relationship: connects UBERON:0004302 ! proximal phalanx + +[Term] +id: UBERON:0009768 +name: distal interphalangeal joint +def: "An inter-phalangeal joint that connects a distal phalanx to either a medial or proximal phalanx." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "DIJ joint" NARROW [http://en.wikipedia.org/wiki/Interphalangeal_articulations_of_the_hand] +synonym: "DIP joint" NARROW [http://en.wikipedia.org/wiki/Interphalangeal_articulations_of_the_hand] +xref: FMA:65024 +xref: NCIT:C101529 +is_a: UBERON:0006658 ! interphalangeal joint +intersection_of: UBERON:0006658 ! interphalangeal joint +intersection_of: connects UBERON:0004300 ! distal phalanx +relationship: connects UBERON:0004300 ! distal phalanx + +[Term] +id: UBERON:0009769 +name: left common cardinal vein +synonym: "common cardinal vein left" EXACT [EHDAA2:0000304] +xref: EHDAA2:0000304 +xref: FMA:70311 +xref: http://www.snomedbrowser.com/Codes/Details/361506000 +is_a: UBERON:0002064 {source="FMA"} ! common cardinal vein + +[Term] +id: UBERON:0009771 +name: left anterior cardinal vein +def: "A anterior cardinal vein that is in_the_left_side_of a multicellular organism." [OBOL:automatic] +synonym: "left precardinal vein" EXACT [FMA:70313] +synonym: "precardinal vein left" EXACT [EHDAA2:0000127] +xref: EHDAA2:0000127 +xref: FMA:70313 +xref: http://www.snomedbrowser.com/Codes/Details/361502003 +is_a: UBERON:0003087 ! anterior cardinal vein +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0003087 ! anterior cardinal vein +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0009772 +name: right anterior cardinal vein +def: "A anterior cardinal vein that is in_the_right_side_of a multicellular organism." [OBOL:automatic] +synonym: "precardinal vein right" EXACT [EHDAA2:0004537] +synonym: "right precardinal vein" EXACT [FMA:70312] +xref: EHDAA2:0004537 +xref: FMA:70312 +xref: http://www.snomedbrowser.com/Codes/Details/361503008 +is_a: UBERON:0003087 ! anterior cardinal vein +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0003087 ! anterior cardinal vein +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: in_right_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0009773 +name: renal tubule +def: "A renal tubule is a tube that filters, re-absorbs and secretes substances to rid an organism of waste and to play a role in fluid homeostasis." [GO:0061333, GOC:dph, GOC:mtg_kidney_jan10, https://doi.org/10.1371/journal.pone.0099864] +subset: grouping_class +subset: pheno_slim +synonym: "renal tubule (generic)" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "tubule of excretory system" EXACT [https://orcid.org/0000-0002-6601-2165, OBOL:automatic] +is_a: UBERON:0003914 ! epithelial tube +is_a: UBERON:0006555 ! excretory tube + +[Term] +id: UBERON:0009774 +name: obsolete embryonic midbrain hindbrain boundary +is_obsolete: true + +[Term] +id: UBERON:0009775 +name: lateral medullary reticular complex +def: "A nuclear complex of the medullary reticular formation that can be divided into three subnuclei: the parvocellular, magnocellular and the subtrigeminal[WP,modified]." [http://en.wikipedia.org/wiki/Lateral_reticular_nucleus] +comment: The lateral reticular nucleus, of the funiculus, can be divided into three subnuclei, the parvocellular, magnocellular and the subtrigeminal. As is typical of the reticular formation, none of these are very distinct subnuclei, but rather blurred distinctions between cell types and location. The lateral reticular nucleus sends all of its projections to the cerebellum. The parvocellular portion of the LRN and the immediately adjacent magnocellular portion send most their projections to the vermis of the cerebellum. The rest of the magnocellular subnucleus sends its projections to the hemisphere regions of the cerebellum. The subtrigeminal nucleus sends its projections to the flocculonodular lobe. All of these efferent pathways are projected in an ipsilateral manner to the cerebellum, the most abundant of which are those to the vermis. This nucleus is also involved in the mediation of inspiration (in-breathing) with a part of the ventral r. nucleus. The afferent pathways to the LRN come from the spinal cord and higher brain structures. Most of the afferents come from the ipsilateral dorsal horn of the spinal cord and project exclusively to the parts of the LRN that do not receive input from the cortex. The spinal cord projections terminate mostly in the parvocellular region along with the adjacent magnocellular cells. This implies that most input from the spinal cord is relayed into the vermis[WP] +synonym: "lateral group of medullary reticular formation" EXACT [FMA:72573] +synonym: "lateral medullary reticular group" EXACT [FMA:72573] +synonym: "lateral reticular formation of the medulla oblongata" EXACT [FMA:72573] +synonym: "nuclei laterales myelencephali" EXACT LATIN [FMA:72573, FMA:TA] +xref: BAMS:LMRt +xref: FMA:72573 +xref: HBA:9613 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=726 +is_a: UBERON:0007245 {source="FMA"} ! nuclear complex of neuraxis +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: part_of UBERON:0002559 {source="FMA"} ! medullary reticular formation + +[Term] +id: UBERON:0009776 +name: intermediate reticular formation +def: "." [https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3413098&group_id=36855] +synonym: "intermediate reticular formations" RELATED PLURAL [ZFA:0000219] +xref: TAO:0000219 +xref: ZFA:0000219 +is_a: UBERON:0007245 {source="https://orcid.org/0000-0002-6601-2165"} ! nuclear complex of neuraxis +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: part_of UBERON:0002559 {source="GOC:pr", source="brainspan.org"} ! medullary reticular formation + +[Term] +id: UBERON:0009777 +name: intermediate reticular nucleus +def: "A nucleus of brain that is part of a intermediate reticular formation." [OBOL:automatic] +xref: BAMS:IRN +xref: BAMS:IRt +xref: DHBA:12620 +xref: FMA:84336 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1114 +xref: MBA:136 +is_a: UBERON:0007635 ! nucleus of medulla oblongata +intersection_of: UBERON:0002308 ! nucleus of brain +intersection_of: part_of UBERON:0009776 ! intermediate reticular formation +relationship: part_of UBERON:0009776 ! intermediate reticular formation + +[Term] +id: UBERON:0009778 +name: pleural sac +def: "A serous sac that has the pleura and the pleural cavity as parts." [https://github.com/obophenotype/uberon/issues/86] +subset: non_informative +xref: EHDAA2:0004737 +xref: FMA:9690 +xref: http://www.snomedbrowser.com/Codes/Details/361996004 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0005906 ! serous sac +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0005906 ! serous sac +intersection_of: has_part UBERON:0000977 ! pleura +intersection_of: has_part UBERON:0002402 ! pleural cavity +relationship: has_part UBERON:0000977 ! pleura +relationship: has_part UBERON:0002402 ! pleural cavity +relationship: in_lateral_side_of UBERON:0001004 {source="FMA-abduced-lr"} ! respiratory system +relationship: part_of UBERON:0001558 {source="FMA"} ! lower respiratory tract + +[Term] +id: UBERON:0009779 +name: cardiac muscle tissue of right auricle +def: "A cardiac muscle tissue that is part of a right atrium auricular region." [OBOL:automatic] +synonym: "cardiac muscle of right auricular region" EXACT [EMAPA:16826] +synonym: "right atrium auricular region heart muscle" EXACT [EHDAA2:0004169] +synonym: "right auricular region cardiac muscle" RELATED [VHOG:0000611] +synonym: "right auricular region myocardium" EXACT [VHOG:0000611] +xref: EHDAA2:0004169 +xref: EMAPA:16826 +xref: EMAPA:17324 +xref: FMA:84280 +xref: VHOG:0000611 +is_a: UBERON:0003378 {source="FMA"} ! cardiac muscle of auricular region +is_a: UBERON:0003379 ! cardiac muscle of right atrium +intersection_of: UBERON:0001133 ! cardiac muscle tissue +intersection_of: part_of UBERON:0006631 ! right atrium auricular region +relationship: part_of UBERON:0006631 ! right atrium auricular region + +[Term] +id: UBERON:0009780 +name: cardiac muscle tissue of left auricle +def: "A cardiac muscle tissue that is part of a left atrium auricular region." [OBOL:automatic] +synonym: "cardiac muscle of left auricular region" EXACT [EMAPA:16818] +synonym: "left atrium auricular region heart muscle" EXACT [EHDAA2:0004168] +xref: EHDAA2:0004168 +xref: EMAPA:16818 +xref: EMAPA:17318 +xref: FMA:84281 +is_a: UBERON:0003378 {source="FMA"} ! cardiac muscle of auricular region +is_a: UBERON:0003380 ! cardiac muscle of left atrium +intersection_of: UBERON:0001133 ! cardiac muscle tissue +intersection_of: part_of UBERON:0006630 ! left atrium auricular region +relationship: part_of UBERON:0006630 ! left atrium auricular region + +[Term] +id: UBERON:0009834 +name: dorsolateral prefrontal cortex +def: "The dorsolateral prefrontal cortex (DL-PFC or DLPFC), according to a more restricted definition, is roughly equivalent to Brodmann areas 9 and 46.[1] According to a broader definition DL-PFC consists of the lateral portions of Brodmann areas 9 - 12, of areas 45, 46, and the superior part of area 47.[2] These regions mainly receive their blood supply from the middle cerebral artery. With respect to neurotransmitter systems, there is evidence that dopamine plays a particularly important role in DL-PFC.[2]DL-PFC is connected to the orbitofrontal cortex, and to a variety of brain areas, which include the thalamus, parts of the basal ganglia (the dorsal caudate nucleus), the hippocampus, and primary and secondary association areas of neocortex, including posterior temporal, parietal, and occipital areas" [http://en.wikipedia.org/wiki/Dorsolateral_prefrontal_cortex] +xref: DHBA:10173 +xref: FMA:276189 +xref: http://en.wikipedia.org/wiki/Dorsolateral_prefrontal_cortex +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000956 ! cerebral cortex + +[Term] +id: UBERON:0009835 +name: anterior cingulate cortex +def: "The frontal part of the cingulate cortex that resembles a collar form around the corpus callosum. It includes both the ventral and dorsal areas of the cingulate cortex. Wikipedia:File:Gray727.svg" [BIRNLEX:936] +synonym: "ACC" RELATED ABBREVIATION [BTO:0004249] +xref: BIRNLEX:936 +xref: BTO:0004249 +xref: FMA:271599 +xref: http://en.wikipedia.org/wiki/Anterior_cingulate_cortex +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +disjoint_from: UBERON:0022353 {source="lexical"} ! posterior cingulate cortex +relationship: part_of UBERON:0003027 {source="BTO"} ! cingulate cortex + +[Term] +id: UBERON:0009836 +name: fronto-orbital gyrus +synonym: "fronto-orbital gyrus" EXACT [BIRNLEX:1243] +synonym: "gyrus fronto-orbitalis" RELATED LATIN [NeuroNames:90] +synonym: "orbito-frontal gyrus" EXACT [] +synonym: "orbitofrontal gyrus" EXACT [] +xref: BAMS:FOG +xref: BAMS:OFG +xref: BIRNLEX:1243 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=90 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=90 {source="BIRNLEX:1243"} +xref: http://linkedlifedata.com/resource/umls/id/C0262239 +xref: UMLS:C0262239 {source="BIRNLEX:1243"} +is_a: UBERON:0007193 {source="NIF"} ! orbital gyrus +is_a: UBERON:0015593 ! frontal gyrus +relationship: part_of UBERON:0004167 ! orbitofrontal cortex + +[Term] +id: UBERON:0009840 +name: lower rhombic lip +def: "Posterior portion of the rhombic lip contained within rhombomeres 2-8. Gives rise to several brainstem nuclei and choroid plexus." [ZFIN:curator] +subset: pheno_slim +synonym: "caudal rhombic lip" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "lower (caudal) rhombic lip" EXACT [] +xref: DHBA:10666 +xref: TAO:0001441 +xref: ZFA:0001441 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0006215 {source="ZFA"} ! rhombic lip + +[Term] +id: UBERON:0009841 +name: upper rhombic lip +def: "Anterior-most region of dorsal hindbrain within rhombomere 1, adjacent the midbrain-hindbrain boundary." [ZFIN:curator] +subset: pheno_slim +synonym: "cerebellar anlage" EXACT [ZFA:0001442] +synonym: "presumptive cerebellum" EXACT [ZFA:0001442] +synonym: "rhombomere 01 cerebellum primordium" RELATED [EHDAA2:0000229] +synonym: "rostral rhombic lip" EXACT [DHB:URL] +synonym: "upper (rostral) rhombic lip" EXACT [] +xref: DHBA:10665 +xref: EHDAA2:0000229 +xref: TAO:0001442 +xref: ZFA:0001442 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: adjacent_to UBERON:0003052 {source="ZFA-def"} ! midbrain-hindbrain boundary +relationship: part_of UBERON:0005499 {source="ZFA"} ! rhombomere 1 +relationship: part_of UBERON:0006215 {source="ZFA"} ! rhombic lip + +[Term] +id: UBERON:0009842 +name: glandular acinus +def: "The many-lobed berry cluster of cells that is the terminous of a gland where the secretion is produced is acinar in form." [http://en.wikipedia.org/wiki/Acinus] +synonym: "acini" RELATED PLURAL [http://en.wikipedia.org/wiki/Acinus] +synonym: "acinus" BROAD [FMA:55588] +xref: FMA:55588 +xref: http://en.wikipedia.org/wiki/Acinus +is_a: UBERON:0034922 ! cell cluster +relationship: part_of UBERON:0002530 ! gland + +[Term] +id: UBERON:0009843 +name: prostate epithelial cord +def: "A solid cord of prostate epithelium." [GO:0060527, http://www.ncbi.nlm.nih.gov/pubmed/18977204, OBOL:automatic] +comment: Complexity is conferred on the prostate during a postnatal development phase known as branching morphogenesis. Solid cords of prostate epithelium formed in utero elongate postnatally and their tips are bifurcated into primary, secondary, and tertiary branches in a pattern that is unique for each prostate lobe. Branching morphogenesis proceeds differentially for each of the three mouse prostate lobes (ventral, dorsolateral, and anterior) and is completed by about postnatal day 20 in mice, providing each lobe with unique glandular architecture [5]. It is important to note that the developing human prostate undergoes a similar series of morphogenetic events especially during prostatic bud formation, but gives rise to a mature glandular prostate that is unique from the rodent and features peripheral, central, and transitional zones[PMID:18977204] +synonym: "cord of prostate epithelium" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/18977204] +synonym: "epithelial cord of prostate" EXACT [] +is_a: UBERON:0005154 ! epithelial cord +intersection_of: UBERON:0005154 ! epithelial cord +intersection_of: has_potential_to_develop_into UBERON:0002367 ! prostate gland +relationship: has_potential_to_develop_into UBERON:0002367 ! prostate gland + +[Term] +id: UBERON:0009844 +name: urogenital sinus lumen +def: "An anatomical space that surrounded_by a primitive urogenital sinus." [OBOL:automatic] +xref: EHDAA2:0002142 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0000164 ! primitive urogenital sinus +relationship: develops_from UBERON:0009669 {source="EHDAA2"} ! embryonic cloacal lumen +relationship: luminal_space_of UBERON:0000164 ! primitive urogenital sinus +relationship: part_of UBERON:0000164 ! primitive urogenital sinus +relationship: surrounded_by UBERON:0004902 ! urogenital sinus epithelium + +[Term] +id: UBERON:0009845 +name: urogenital sinus mesenchyme +def: "Mesenchyme that surrounds primitive urogenital sinus." [OBOL:automatic] +synonym: "UGM" EXACT ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/18977204] +xref: EMAPA:31500 +is_a: UBERON:0003104 ! mesenchyme +intersection_of: UBERON:0003104 {source="http://www.ncbi.nlm.nih.gov/pubmed/18977204"} ! mesenchyme +intersection_of: surrounds UBERON:0000164 {source="http://www.ncbi.nlm.nih.gov/pubmed/18977204"} ! primitive urogenital sinus +relationship: surrounds UBERON:0000164 ! primitive urogenital sinus + +[Term] +id: UBERON:0009846 +name: embryonic cloacal epithelium +def: "An epithelium that is part of a embryonic cloaca." [OBOL:automatic] +synonym: "cloacal epithelium" BROAD [EHDAA2:0004585] +xref: EHDAA2:0004585 +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0009521 ! anal membrane endodermal component +is_a: UBERON:0012481 ! cloacal epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000163 ! embryonic cloaca +relationship: develops_from UBERON:0003353 {source="EHDAA2"} ! epithelium of hindgut +relationship: part_of UBERON:0000163 ! embryonic cloaca + +[Term] +id: UBERON:0009847 +name: prostate field +def: "A specific region of the urogenital sinus epithelium into the area in which the prostate gland will develop." [GO:0060515, GOC:dph, http://www.ncbi.nlm.nih.gov/pubmed/18977204] +synonym: "prostate primordium" RELATED [] +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0006598 ! presumptive structure +is_a: UBERON:0007688 ! anlage +intersection_of: UBERON:0007688 ! anlage +intersection_of: has_potential_to_develop_into UBERON:0002367 ! prostate gland +relationship: developmentally_induced_by UBERON:0009845 {source="http://www.ncbi.nlm.nih.gov/pubmed/18977204"} ! urogenital sinus mesenchyme +relationship: has_potential_to_develop_into UBERON:0002367 ! prostate gland +relationship: part_of UBERON:0004902 {source="http://www.ncbi.nlm.nih.gov/pubmed/18977204"} ! urogenital sinus epithelium + +[Term] +id: UBERON:0009848 +name: zona limitans intrathalamica +def: "A narrow stripe of cells that lies between the prospective dorsal and ventral thalami. This boundary contains signals that pattern the prethalamic and thalamic territories of the future mid-diencephalon." [GO:0022006, GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, http://en.wikipedia.org/wiki/Zona_limitans_intrathalamica, http://www.ncbi.nlm.nih.gov/pubmed/11425897, http://www.ncbi.nlm.nih.gov/pubmed/16452095] +synonym: "MDO" RELATED ABBREVIATION [http://en.wikipedia.org/wiki/Thalamus] +synonym: "mid-diencephalic organizer" RELATED [http://en.wikipedia.org/wiki/Thalamus] +synonym: "ZLI" EXACT ABBREVIATION [GO:0022006] +synonym: "ZLI organizer" RELATED [http://en.wikipedia.org/wiki/Thalamus] +xref: EMAPA:36604 +xref: http://en.wikipedia.org/wiki/Zona_limitans_intrathalamica +xref: TAO:0001344 +xref: XAO:0004305 +xref: ZFA:0001344 +is_a: UBERON:0006800 ! anatomical line +intersection_of: UBERON:0006800 ! anatomical line +intersection_of: adjacent_to UBERON:0001900 ! ventral thalamus +intersection_of: adjacent_to UBERON:0004703 ! dorsal thalamus +relationship: adjacent_to UBERON:0001900 ! ventral thalamus +relationship: adjacent_to UBERON:0004703 ! dorsal thalamus +relationship: part_of UBERON:0001897 {source="ZFA"} ! dorsal plus ventral thalamus + +[Term] +id: UBERON:0009849 +name: tadpole stage +def: "wholly aquatic larval stage in the life cycle of an amphibian, particularly of a frog or toad[WP]. XAO: The stages from feeding to the end of metamorphosis. Encompasses Weisz's first-form tadpole (equivalent to NF stages 45 to 49), second-form tadpole (NF 49 to 56) and third-form tadpole (NF 56 to 60-plus) stages." [http://en.wikipedia.org/wiki/Tadpole, ISBN:0471209627, ISSN:0003-276X] +xref: http://en.wikipedia.org/wiki/Tadpole +xref: XAO:1000008 +is_a: UBERON:0004728 ! amphibian larval stage + +[Term] +id: UBERON:0009850 +name: nematode larva +def: "A multicellular organism that existence_starts_and_ends_during a nematode larval stage." [OBOL:automatic] +is_a: UBERON:0002548 ! larva +intersection_of: UBERON:0000468 ! multicellular organism +intersection_of: existence_starts_and_ends_during UBERON:0004729 ! nematode larval stage +relationship: existence_starts_and_ends_during UBERON:0004729 ! nematode larval stage +relationship: present_in_taxon NCBITaxon:6239 + +[Term] +id: UBERON:0009851 +name: border of sublaminar layers S4 and S5 +def: "The intersection of sublaminar layers S4 and S5." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] +is_a: UBERON:0009740 ! border between sublaminar layers +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan +relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5 + +[Term] +id: UBERON:0009852 +name: border of sublaminar layers S2 and S3 +def: "The intersection of sublaminar layers S2 and S3." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] +is_a: UBERON:0009740 ! border between sublaminar layers +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan +relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3 + +[Term] +id: UBERON:0009853 +name: body of uterus +def: "The part of the uterus above the isthmus and below the orifices of the uterine tubes." [http://medical-dictionary.thefreedictionary.com/corpus+uteri] +subset: efo_slim +synonym: "corpus uteri" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "uterine body" EXACT [FMA:17739] +synonym: "uterine corpus" EXACT [FMA:17739] +xref: CALOHA:TS-1265 +xref: EFO:0000382 +xref: FMA:17739 +xref: http://linkedlifedata.com/resource/umls/id/C0227813 +xref: http://www.snomedbrowser.com/Codes/Details/279878007 +xref: NCIT:C12316 +xref: UMLS:C0227813 {source="ncithesaurus:Corpus_Uteri"} +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0034944 ! zone of organ +intersection_of: UBERON:0034944 ! zone of organ +intersection_of: continuous_with UBERON:0003889 ! fallopian tube +intersection_of: continuous_with UBERON:0013759 ! internal cervical os +relationship: continuous_with UBERON:0003889 ! fallopian tube +relationship: continuous_with UBERON:0013759 ! internal cervical os +relationship: part_of UBERON:0000995 {source="FMA"} ! uterus + +[Term] +id: UBERON:0009854 +name: digestive tract diverticulum +def: "Branch or outpocketing of the digestive tract." [https://orcid.org/0000-0002-6601-2165] +synonym: "diverticulum of gut" RELATED [FBbt:00100316] +synonym: "intestinal pouch" RELATED [] +xref: FBbt:00100316 +is_a: UBERON:0004921 ! subdivision of digestive tract +is_a: UBERON:0009856 ! sac +intersection_of: UBERON:0009856 ! sac +intersection_of: part_of UBERON:0001555 ! digestive tract + +[Term] +id: UBERON:0009855 +name: echinoderm gastric caecum +def: "non-contractile pouch that is connected to the anterior stomach through a slit-like opening. This pouch is also well-connected to the haemal system through numerous haemal ducts within its connective tissue layer." [http://www.ncbi.nlm.nih.gov/pubmed/20955602] +comment: The digestive tract of many metazoan invertebrates is characterized by the presence of caeca or diverticula that serve secretory and/or absorptive functions. With the development of various feeding habits, distinctive digestive organs may be present in certain taxa. This also holds true for sea urchins (Echinodermata: Echinoidea), in which a highly specialized gastric caecum can be found in members of a derived subgroup, the Irregularia (cake urchins, sea biscuits, sand dollars, heart urchins, and related forms)... Homologous with the more or less pronounced dilation of the anterior stomach that is observed in most "regular" sea urchin taxa[PMID:20955602] +is_a: UBERON:0009854 ! digestive tract diverticulum + +[Term] +id: UBERON:0009856 +name: sac +synonym: "diverticulum" RELATED [] +synonym: "pouch" EXACT [] +xref: galen:Diverticulum +is_a: UBERON:0000061 ! anatomical structure + +[Term] +id: UBERON:0009857 +name: cavum septum pellucidum +def: "A space enclosed within the laminae of the septum pelludicum, the membranous partition that seperates the frontal horns of the ventricle. contains cerebrospinal fluid (CSF) that filters from the ventricles through the septal laminae. bounded anteriorly by the genu of the corpus callosum; superiorly by the body of the corpus callosum; posteriorly by the anterior limb and pillars of the fornix; inferiorly by the anterior commissure and the rostrum of the corpus callosum; and laterally by the leaflets of the septum pellucidum." [BTO:0003447, http://en.wikipedia.org/wiki/Cave_of_septum_pellucidum] +synonym: "cave of septum pellucidum" EXACT [FMA:61874] +synonym: "cavum of septum pellucidum" EXACT [FMA:61874] +synonym: "cavum septi pellucidi" RELATED LATIN [http://en.wikipedia.org/wiki/Cave_of_septum_pellucidum] +synonym: "cavum septi pellucidi" RELATED [http://en.wikipedia.org/wiki/Cave_of_septum_pellucidum] +synonym: "fifth ventricle" RELATED [FMA:61874, http://en.wikipedia.org/wiki/Cave_of_septum_pellucidum] +synonym: "septum pellucidum cave" EXACT [FMA:61874] +synonym: "ventriculus septi pellucidi" EXACT [FMA:61874] +xref: BAMS:CSP +xref: BTO:0003447 +xref: DHBA:12099 +xref: FMA:61874 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=257 +xref: http://en.wikipedia.org/wiki/Cave_of_septum_pellucidum +xref: http://linkedlifedata.com/resource/umls/id/C0228158 +xref: http://www.snomedbrowser.com/Codes/Details/180933005 +xref: NCIT:C32602 +xref: UMLS:C0228158 {source="ncithesaurus:Fifth_Ventricle"} +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0004714 ! septum pellucidum +relationship: adjacent_to UBERON:0002742 ! lamina of septum pellucidum +relationship: luminal_space_of UBERON:0004714 ! septum pellucidum +relationship: part_of UBERON:0004714 ! septum pellucidum + +[Term] +id: UBERON:0009858 +name: outer fibrous layer of periosteum +synonym: "capsular layer of periosteum" EXACT [FMA:234354] +synonym: "external layer of periosteum" EXACT [] +synonym: "external periosteum" EXACT [] +synonym: "fibrous layer of periosteum" EXACT [FMA:234354] +synonym: "outer fibrous layer of periosteum" EXACT [FMA:234354] +xref: FMA:234354 +is_a: UBERON:0000158 ! membranous layer +relationship: composed_primarily_of UBERON:0011822 ! dense irregular connective tissue +relationship: part_of UBERON:0002515 {source="FMA"} ! periosteum + +[Term] +id: UBERON:0009859 +name: endosteum +def: "A thin layer of connective tissue that lines the surface of the bony tissue that forms the medullary cavity of long bones" [http://en.wikipedia.org/wiki/Endosteum] +subset: pheno_slim +xref: FMA:32692 +xref: http://en.wikipedia.org/wiki/Endosteum +xref: http://linkedlifedata.com/resource/umls/id/C0222658 +xref: http://www.snomedbrowser.com/Codes/Details/57487002 +xref: NCIT:C13183 +xref: UMLS:C0222658 {source="ncithesaurus:Endosteum"} +is_a: UBERON:0000158 ! membranous layer +relationship: adjacent_to UBERON:0002484 ! bone marrow cavity +relationship: composed_primarily_of UBERON:0011825 ! loose connective tissue +relationship: part_of UBERON:0002495 ! long bone + +[Term] +id: UBERON:0009860 +name: ascidian digestive gland +xref: ANISEED:1239655 +is_a: UBERON:0006925 ! digestive system gland + +[Term] +id: UBERON:0009861 +name: ascidian neural complex +def: "." [http://www.ncbi.nlm.nih.gov/pubmed/21558186] +is_a: UBERON:0002530 ! gland + +[Term] +id: UBERON:0009862 +name: ascidian cerebral ganglion +def: "." [http://www.ncbi.nlm.nih.gov/pubmed/21558186] +comment: the CG appears to be a diencephalic brain. It originates mainly from the posterior sensory vesicle (Takamura 2002; Dufour et al. 2006) and shows endocrine activity. For examples, ascidian genes orthologous to GnRH and OT/VP, which are secreted from the hypothalamus and the NH, respectively, in vertebrates, are expressed in the cortex of the CG, suggesting that the NC is not distinctly compartmentalized as are vertebrate brains (Tsutsui et al. 1998; Kavanaugh et al. 2005; Kawada et al. 2008; Ukena et al. 2008; Kawada et al. 2009). Moreover, PC2 expression in the cortex of the CG supports possible endocrine activity (Sekiguchi et al. 2007). // Editor notes: consider merging into brain, based on http://www.ncbi.nlm.nih.gov/pubmed/21062451 "We suggest using the term brain not only for the 'dorsal ganglia' of adult Tunicata and Pterobranchia, but also for the larval 'cerebral ganglion' of tunicates." +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0009861 ! ascidian neural complex + +[Term] +id: UBERON:0009863 +name: ascidian ciliated funnel +def: "." [http://www.ncbi.nlm.nih.gov/pubmed/21558186] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0009861 ! ascidian neural complex + +[Term] +id: UBERON:0009864 +name: ascidian neural gland +def: "." [http://www.ncbi.nlm.nih.gov/pubmed/21558186] +comment: assumed to be a pituitary homolog. Current data from the Ciona genome suggests that the ascidian NC, including the CF, is unlikely to be a pituitary-like endocrine gland, while it is necessary to examine other ascidians before drawing a final conclusion [PMID:21558186] +is_a: UBERON:0000064 ! organ part +relationship: develops_from UBERON:0009718 ! neurohypophyseal duct +relationship: part_of UBERON:0009861 ! ascidian neural complex + +[Term] +id: UBERON:0009865 +name: Hatschek's pit +def: "A deep ciliated fossa on the dorsal midline of the buccal cavity (the region of the gut behind the mouth). Among other things, it secrets mucus which entraps food particles from the water[WP]." [http://en.wikipedia.org/wiki/Hatschek's_pit] +xref: Hatschek's:pit +is_a: UBERON:0006846 ! surface groove +relationship: develops_from UBERON:0009868 ! Hatschek's left diverticulum +relationship: develops_from UBERON:0009957 ! ciliated pit + +[Term] +id: UBERON:0009866 +name: Hatschek's nephridium +def: "An unpaired kidney whose duct opens into the anterior pharynx. It can be seen as a deep ciliated fossa on the dorsal midline of the buccal cavity (mouth). Among other things, it secrets mucus which entraps food particles from the water[WP]." [http://orcid.org/0000-0002-6601-2165] +subset: organ_slim +is_a: UBERON:0000062 ! organ +relationship: part_of UBERON:0001008 ! renal system + +[Term] +id: UBERON:0009867 +name: Hatschek's diverticulum +is_a: UBERON:0001048 ! primordium +relationship: part_of UBERON:0001042 ! chordate pharynx + +[Term] +id: UBERON:0009868 +name: Hatschek's left diverticulum +def: "A Hatschek's diverticulum that is in the left side of a multicellular organism." [OBOL:automatic] +is_a: UBERON:0009867 ! Hatschek's diverticulum +intersection_of: UBERON:0009867 ! Hatschek's diverticulum +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0009869 +name: Hatschek's right diverticulum +def: "A Hatschek's diverticulum that is in the right side of a multicellular organism." [OBOL:automatic] +is_a: UBERON:0009867 ! Hatschek's diverticulum +intersection_of: UBERON:0009867 ! Hatschek's diverticulum +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: in_right_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0009870 +name: zone of stomach +alt_id: UBERON:0009034 +def: "A division of the stomach. The stomach can be divided based on mucosal histology (glandular epithelium and gastric glands) and the relative position and type of gastric gland." [http://en.wikipedia.org/wiki/Stomach#Sections, ISBN:0073040584] +synonym: "gastric zone" EXACT [FMA:14558] +synonym: "region of stomach" EXACT [] +synonym: "section of stomach" EXACT [] +xref: EMAPA:35821 +xref: FMA:14558 +xref: http://www.snomedbrowser.com/Codes/Details/245415005 +xref: MA:0002561 +xref: Sections +is_a: UBERON:0004921 ! subdivision of digestive tract +is_a: UBERON:0034944 ! zone of organ +intersection_of: UBERON:0034944 ! zone of organ +intersection_of: part_of UBERON:0000945 ! stomach +relationship: part_of UBERON:0000945 ! stomach + +[Term] +id: UBERON:0009871 +name: nephrogenic zone +def: "Outer portion of the renal cortex. Site of formation of medullary and cortical elements." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "cortical nephrogenic niche" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/29449449] +synonym: "cortical nephrogenic zone" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/29449449] +synonym: "nephrogenic tissue" RELATED [] +xref: EMAPA:27721 +xref: http://www.gudmap.org/Images/Organ_Summaries/Metanephros/NZ.png +xref: MA:0002996 +is_a: UBERON:0005423 ! developing anatomical structure +relationship: part_of UBERON:0001225 ! cortex of kidney + +[Term] +id: UBERON:0009877 +name: metapodium region +def: "Intermediate segment of the autopod, between the mesopodial region and and acropodial region. Examples: metacarpal region, metatarsal region" [https://orcid.org/0000-0002-6601-2165, MA:th] +synonym: "cannon region" NARROW [http://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] +synonym: "equine cannon region" NARROW [http://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] +synonym: "metacarpal or metatarsal part of limb" EXACT [] +synonym: "metacarpus/metatarsus" RELATED [] +synonym: "metacarpus/metatarsus region" EXACT [] +synonym: "metapodial segment" EXACT [] +synonym: "metapodium" RELATED [] +xref: http://www.snomedbrowser.com/Codes/Details/370640001 +is_a: UBERON:0002529 ! limb segment +intersection_of: UBERON:0002529 ! limb segment +intersection_of: has_skeleton UBERON:0010546 ! metapodial skeleton +relationship: has_skeleton UBERON:0010546 ! metapodial skeleton +relationship: part_of UBERON:0012140 {source="PHENOSCAPE:ni"} ! digitopodium region +relationship: proximally_connected_to UBERON:0006716 ! mesopodium region + +[Term] +id: UBERON:0009878 +name: mesopodial skeleton +def: "The collection of all skeletal elements in a mesopodium. Examples: the tarsal skeleton, the carpal skeleton" [https://orcid.org/0000-0002-6601-2165] +synonym: "basipodium" RELATED [VSAO:0005022, VSAO:NI] +synonym: "basipodium skeleton" EXACT [VSAO:0005022, VSAO:NI] +synonym: "carpal/tarsal skeleton" EXACT [] +synonym: "mesopodial skeleton" EXACT [VSAO:0005022] +synonym: "mesopodium" RELATED [VSAO:0005022, VSAO:NI] +synonym: "mesopodium skeleton" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "skeletal parts of mesopodium" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: VSAO:0005022 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010712 ! limb skeleton subdivision +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0006716 ! mesopodium region +relationship: distally_connected_to UBERON:0010546 ! metapodial skeleton +relationship: part_of UBERON:0006716 ! mesopodium region +relationship: part_of UBERON:0006717 ! autopodial skeleton +relationship: proximally_connected_to UBERON:0011584 ! zeugopodial skeleton +relationship: skeleton_of UBERON:0006716 ! mesopodium region + +[Term] +id: UBERON:0009879 +name: tarsal skeleton +def: "Subdivision of skeleton that consists of endochondral elements distal to the zeugopodial skeletal elements which constitute the proximal region of the posterior autopod skeleton[PHENOSCAPE:ad]." [https://github.com/obophenotype/uberon/issues/94, PHENOSCAPE:ad, VSAO:0005024] +subset: pheno_slim +synonym: "basipodium" RELATED [VSAO:0005024] +synonym: "hind mesopodial skeleton" EXACT [] +synonym: "hind mesopodium" EXACT [] +synonym: "hind mesopodium skeleton" EXACT [] +synonym: "mesopodium" RELATED [VSAO:0005024] +synonym: "set of tarsal bones" EXACT [FMA:71339] +synonym: "skeletal parts of hind mesopodium" EXACT [] +synonym: "tarsal bones" RELATED [] +synonym: "tarsal bones set" EXACT [FMA:71339] +synonym: "tarsalia" EXACT [XAO:0003211] +synonym: "tarsus" RELATED [XAO:0003211] +xref: AAO:0000220 +xref: EMAPA:19133 +xref: FMA:71339 +xref: GAID:1223 +xref: http://www.snomedbrowser.com/Codes/Details/264228001 +xref: http://www.snomedbrowser.com/Codes/Details/361796005 +xref: MA:0000050 +xref: Tarsus:(skeleton) +xref: VHOG:0001160 +xref: VSAO:0005024 +xref: XAO:0003211 +is_a: UBERON:0009878 ! mesopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0004454 ! tarsal region +property_value: dc-contributor https://github.com/alex-dececchi +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +relationship: distally_connected_to UBERON:0010545 ! metatarsus skeleton +relationship: part_of UBERON:0001445 ! skeleton of pes +relationship: part_of UBERON:0004454 ! tarsal region +relationship: proximally_connected_to UBERON:0010720 ! hindlimb zeugopod skeleton +relationship: skeleton_of UBERON:0004454 ! tarsal region + +[Term] +id: UBERON:0009880 +name: carpal skeleton +def: "Subdivision of skeleton that consists of the endochondral elements distal to the anterior limb/fin zeugopodial skeletal elements which constitute the proximal region of the anterior autopod skeleton[PHENOSCAPE:ad]." [https://github.com/obophenotype/uberon/issues/93, PHENOSCAPE:ad] +synonym: "carpal bones" EXACT [EMAPA:25056, FMA:71335] +synonym: "carpal bones set" EXACT [FMA:71335] +synonym: "carpus" RELATED [MA:0000040, XAO:0003207] +synonym: "fore mesopodial skeleton" EXACT [] +synonym: "fore mesopodium" RELATED [AAO:0000201] +synonym: "fore mesopodium skeleton" EXACT [] +synonym: "ossa carpi" EXACT [] +synonym: "ossa carpi" RELATED LATIN [http://en.wikipedia.org/wiki/Carpus] +synonym: "set of carpal bones" RELATED [FMA:71335] +synonym: "skeletal parts of fore mesopodium" EXACT [] +synonym: "skeleton of carpus" EXACT [] +xref: AAO:0000201 +xref: FMA:71335 +xref: http://en.wikipedia.org/wiki/Carpus +xref: http://palaeos.com/vertebrates/glossary/images/382x366xUnciform1.jpg.pagespeed.ic.NirdxtwNVu.jpg +xref: MA:0000040 +xref: VHOG:0001161 +xref: VSAO:0005023 +xref: XAO:0003207 +is_a: UBERON:0009878 ! mesopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0004452 ! carpal region +property_value: dc-contributor https://github.com/alex-dececchi +property_value: dc-contributor https://github.com/cmungall +relationship: distally_connected_to UBERON:0010544 ! metacarpus skeleton +relationship: part_of UBERON:0001442 ! skeleton of manus +relationship: part_of UBERON:0004452 ! carpal region +relationship: proximally_connected_to UBERON:0010703 ! forelimb zeugopod skeleton +relationship: skeleton_of UBERON:0004452 ! carpal region + +[Term] +id: UBERON:0009881 +name: anterior lateral plate mesoderm +subset: efo_slim +synonym: "ALPM" EXACT [ZFA:0005041] +xref: EFO:0003704 +xref: TAO:0005041 +xref: ZFA:0005041 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +disjoint_from: UBERON:0009910 {source="lexical"} ! posterior lateral plate mesoderm +relationship: part_of UBERON:0003081 {source="ZFA"} ! lateral plate mesoderm + +[Term] +id: UBERON:0009882 +name: anal column +def: "One of a number of vertical folds, produced by an infolding of the mucous membrane and some of the muscular tissue in the upper half of the lumen of the anal canal[WP]" [http://en.wikipedia.org/wiki/Anal_columns] +synonym: "column of Morgagni" EXACT [FMA:15713] +synonym: "columnae anales" RELATED LATIN [http://en.wikipedia.org/wiki/Anal_columns] +xref: Anal:columns +xref: FMA:15713 +xref: http://linkedlifedata.com/resource/umls/id/C0227428 +xref: http://www.snomedbrowser.com/Codes/Details/245444007 +xref: NCIT:C32067 +xref: UMLS:C0227428 {source="ncithesaurus:Anal_Column"} +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0034944 ! zone of organ +relationship: part_of UBERON:0000159 ! anal canal + +[Term] +id: UBERON:0009883 +name: medullary ray +def: "A renal, cortical lobule, consisting of the ascending or descending limbs of the loop of Henle or of the collecting tubules; medullary rays are regions where parallel arrays of straight tubules travel perpendicular to the capsule and extend from the cortex to the medulla." [http://en.wikipedia.org/wiki/Bone_marrow_of_ovaryry_ray_(anatomy), MP:0011347] +subset: pheno_slim +synonym: "Ferrein's pyramid" EXACT [MP:0011347] +synonym: "kidney medullary ray" EXACT [MP:0011347] +synonym: "renal medullary ray" EXACT [MP:0011347] +xref: BTO:0001155 +xref: EMAPA:37906 {source="MA:th"} +xref: FMA:74299 +xref: http://en.wikipedia.org/wiki/Bone_marrow_of_ovaryry_ray_(anatomy) +is_a: UBERON:0000064 {source="FMA"} ! organ part +relationship: contributes_to_morphology_of UBERON:0001225 ! cortex of kidney +relationship: part_of UBERON:0001225 {source="MP"} ! cortex of kidney + +[Term] +id: UBERON:0009885 +name: interlobar artery +def: "An artery that supplies a renal lobe." [http://en.wikipedia.org/wiki/Interlobar_arteries, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "arteriae interlobares renis" EXACT PLURAL [FMA:TA] +synonym: "arteriae interlobares renis" RELATED LATIN [http://en.wikipedia.org/wiki/Interlobar_arteries] +synonym: "interlobar arteries of kidney" RELATED [FMA:71637] +synonym: "interlobar artery of kidney" EXACT [FMA:71637] +synonym: "kidney interlobar artery" EXACT [] +synonym: "renal interlobar artery" EXACT [MP:0011355] +synonym: "set of interlobar arteries of kidney" RELATED [FMA:71637] +xref: EMAPA:37091 {source="MA:th"} +xref: FMA:71637 +xref: http://www.snomedbrowser.com/Codes/Details/62802007 +xref: Interlobar:arteries +is_a: UBERON:0001637 ! artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0009913 ! renal lobe +relationship: supplies UBERON:0009913 ! renal lobe + +[Term] +id: UBERON:0009887 +name: interlobar vein +def: "The interlobar veins are veins of the renal circulation which drain the renal lobes." [http://en.wikipedia.org/wiki/Interlobar_veins] +synonym: "interlobar vein of kidney" EXACT [FMA:71631] +synonym: "interlobar veins of kidney" RELATED [FMA:71631] +synonym: "set of interlobar veins of kidney" RELATED [FMA:71631] +synonym: "venae interlobares renis" EXACT PLURAL [FMA:TA] +synonym: "venae interlobares renis" RELATED LATIN [http://en.wikipedia.org/wiki/Interlobar_veins] +xref: FMA:71631 +xref: Interlobar:veins +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0009913 ! renal lobe +relationship: drains UBERON:0009913 ! renal lobe + +[Term] +id: UBERON:0009888 +name: Koller's sickle +def: "A local thickening of cells that acts as a margin separating sheets of cells from posterior margin of avian blastoderms from hypoblasts as they migrate anteriorly to push primary hypoblast cells anteriorly to form a secondary hypoblast known as the endoblast" [http://en.wikipedia.org/wiki/Koller's_sickle, http://www.ncbi.nlm.nih.gov/pubmed/9693154] +subset: early_development +synonym: "Kohler's sickle" EXACT [] +xref: Koller's:sickle +is_a: UBERON:0002050 ! embryonic structure + +[Term] +id: UBERON:0009889 +name: secondary heart field +def: "A specific region of the lateral mesoderm that will form the majority of the mesodermal component of the right ventricle, arterial pole (outflow tract) and venous pole (inflow tract)." [GO:0003139, GOC:mtg_heart, GOC:rl] +synonym: "anterior heart field" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/17276708] +synonym: "anterior/second heart field" EXACT [Geisha:syn, NCBITaxon:8782] +synonym: "second heart field" EXACT [XAO:0004186] +synonym: "SHF" RELATED [XAO:0004186] +xref: XAO:0004186 +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0007688 ! anlage +relationship: anterior_to UBERON:0004140 {source="http://www.ncbi.nlm.nih.gov/pubmed/17276708"} ! primary heart field +relationship: dorsal_to UBERON:0004140 {source="http://www.ncbi.nlm.nih.gov/pubmed/17276708"} ! primary heart field +relationship: part_of UBERON:0003081 {source="GO:0003129"} ! lateral plate mesoderm + +[Term] +id: UBERON:0009890 +name: anterior intestinal portal +def: "opening of the foregut into the midgut" [http://www.drugs.com/dict/fovea-cardiaca.html] +synonym: "fovea cardiaca" EXACT [http://www.drugs.com/dict/fovea-cardiaca.html] +is_a: UBERON:0004111 ! anatomical conduit +relationship: adjacent_to UBERON:0001041 ! foregut +relationship: adjacent_to UBERON:0001046 ! hindgut +relationship: part_of UBERON:0006235 ! foregut-midgut junction + +[Term] +id: UBERON:0009891 +name: facial mesenchyme +def: "Mesenchyme that is part of a developing face." [OBOL:automatic] +synonym: "face mesenchyme" EXACT [] +synonym: "mesenchyme of face" EXACT [] +xref: EMAPA:35337 +xref: FMA:302884 +is_a: UBERON:0005253 ! head mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001456 ! face +relationship: part_of UBERON:0001456 ! face + +[Term] +id: UBERON:0009892 +name: ascidian anterior sensory vesicle +xref: ANISEED:777309 +is_a: UBERON:0000020 ! sense organ + +[Term] +id: UBERON:0009893 +name: ascidian ocellus +xref: ANISEED:874489 +is_a: UBERON:0000020 ! sense organ +relationship: part_of UBERON:0009892 ! ascidian anterior sensory vesicle + +[Term] +id: UBERON:0009894 +name: siphon primordium +xref: ANISEED:1210451 +is_a: UBERON:0005423 ! developing anatomical structure + +[Term] +id: UBERON:0009895 +name: atrial siphon primordia +xref: ANISEED:1210456 +is_a: UBERON:0009894 ! siphon primordium + +[Term] +id: UBERON:0009896 +name: oral siphon primordia +xref: ANISEED:1225922 +is_a: UBERON:0009894 ! siphon primordium + +[Term] +id: UBERON:0009897 +name: right auditory cortex +def: "An auditory cortex that is in the left side of a brain." [OBOL:automatic] +xref: FMA:242654 +is_a: UBERON:0001393 ! auditory cortex +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0001393 ! auditory cortex +intersection_of: in_left_side_of UBERON:0000955 ! brain +relationship: in_left_side_of UBERON:0000955 ! brain + +[Term] +id: UBERON:0009898 +name: left auditory cortex +def: "An auditory cortex that is in the right side of a brain." [OBOL:automatic] +xref: FMA:242656 +is_a: UBERON:0001393 ! auditory cortex +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0001393 ! auditory cortex +intersection_of: in_right_side_of UBERON:0000955 ! brain +relationship: in_right_side_of UBERON:0000955 ! brain + +[Term] +id: UBERON:0009899 +name: pole of cerebral hemisphere +def: "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole." [http://en.wikipedia.org/wiki/Poles_of_cerebral_hemispheres] +xref: http://en.wikipedia.org/wiki/Poles_of_cerebral_hemispheres +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001869 ! cerebral hemisphere + +[Term] +id: UBERON:0009906 +name: root of optic nerve +def: "A nerve root that extends_fibers_into a nerve connecting eye with brain." [OBOL:automatic] +synonym: "optic nerve root" EXACT [BIRNLEX:1328] +synonym: "optic tract root" EXACT [FMA:84573] +synonym: "root of optic tract" EXACT [FMA:84573] +xref: BIRNLEX:1328 +xref: FMA:84573 +is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve +intersection_of: UBERON:0002211 ! nerve root +intersection_of: extends_fibers_into UBERON:0000941 ! cranial nerve II +relationship: extends_fibers_into UBERON:0000941 ! cranial nerve II + +[Term] +id: UBERON:0009907 +name: sensory root of trigeminal nerve +synonym: "radix sensoria (nervus trigeminus [v])" EXACT [FMA:52611] +synonym: "radix sensoria nervus trigemini" EXACT LATIN [FMA:52611, FMA:TA] +synonym: "sensory root of the trigeminal nerve" RELATED [BAMS:sV] +synonym: "sensory root of the trigeminal nerve" RELATED [BAMS:s5] +xref: BAMS:s5 +xref: BAMS:sV +xref: DHBA:12867 +xref: FMA:52611 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1403 +xref: http://www.snomedbrowser.com/Codes/Details/280188009 +xref: MBA:229 +is_a: UBERON:0004673 {source="FMA"} ! trigeminal nerve root +relationship: develops_from UBERON:0002342 {source="Wikipedia"} ! neural crest + +[Term] +id: UBERON:0009908 +name: caudal root of abducens nerve +synonym: "radix caudalis nervi abducentis" EXACT [ZFA:0000179] +xref: TAO:0000179 +xref: ZFA:0000179 +is_a: UBERON:0002786 ! root of abducens nerve + +[Term] +id: UBERON:0009909 +name: rostral root of abducens nerve +xref: TAO:0000665 +xref: ZFA:0000665 +is_a: UBERON:0002786 ! root of abducens nerve + +[Term] +id: UBERON:0009910 +name: posterior lateral plate mesoderm +subset: efo_slim +synonym: "PLPM" EXACT [ZFA:0005042] +xref: EFO:0003705 +xref: TAO:0005042 +xref: ZFA:0005042 +is_a: UBERON:0000926 {source="ZFA"} ! mesoderm +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0003081 {source="ZFA"} ! lateral plate mesoderm + +[Term] +id: UBERON:0009911 +name: lobule +subset: upper_level +synonym: "lobulus" EXACT LATIN [FMA:45737, FMA:TA] +xref: FMA:45737 +xref: http://linkedlifedata.com/resource/umls/id/C0921005 +xref: NCIT:C12990 +xref: UMLS:C0921005 {source="ncithesaurus:Lobule"} +is_a: UBERON:0000063 {source="cjm"} ! organ subunit + +[Term] +id: UBERON:0009912 +name: anatomical lobe +def: "A portion of an organ, such as the liver, lung, breast, or brain." [ncithesaurus:Lobe] +subset: upper_level +synonym: "lobus" EXACT LATIN [FMA:45728, FMA:TA] +xref: FMA:45728 +xref: http://linkedlifedata.com/resource/umls/id/C0796494 +xref: NCIT:C13393 +is_a: UBERON:0000063 {source="cjm"} ! organ subunit + +[Term] +id: UBERON:0009913 +name: renal lobe +def: "The portion of a kidney consisting of a renal medullary pyramid and the renal cortex above it[MP]. It is composed of many renal lobules[WP]." [http://en.wikipedia.org/wiki/Renal_lobe, MP:0011381] +subset: pheno_slim +synonym: "kidney lobe" EXACT [MP:0011381] +synonym: "lobi renales" RELATED LATIN [http://en.wikipedia.org/wiki/Renal_lobe] +synonym: "lobi renalis" EXACT PLURAL [http://en.wikipedia.org/wiki/Renal_lobe] +synonym: "lobus renalis" EXACT [http://www.mondofacto.com/facts/dictionary?lobus+renalis] +xref: FMA:17881 +xref: http://linkedlifedata.com/resource/umls/id/C0736382 +xref: NCIT:C32894 +xref: Renal:lobe +xref: UMLS:C0736382 {source="ncithesaurus:Kidney_Lower_Lobe"} +is_a: UBERON:0009912 ! anatomical lobe +intersection_of: UBERON:0009912 ! anatomical lobe +intersection_of: part_of UBERON:0002113 ! kidney +relationship: contributes_to_morphology_of UBERON:0002113 ! kidney +relationship: part_of UBERON:0002113 ! kidney + +[Term] +id: UBERON:0009914 +name: renal lobule +def: "The portion of a renal lobe consisting of nephrons grouped around a single medullary ray and draining into a single collecting duct; human kidneys have multilobular, multipapillary architecture while mice and rats have unilobular, unipapillary kidneys" [http://en.wikipedia.org/wiki/Cortical_lobule, MP:0011382] +comment: Alternate definition: One of the subdivisions of the kidney, consisting of a medullary ray and that portion of the convoluted port (renal corpuscles and convoluted tubules) associated with its collecting duct. -http://www.mondofacto.com/facts/dictionary?lobulus+corticalis+renalis +subset: pheno_slim +synonym: "cortical lobule" RELATED [http://en.wikipedia.org/wiki/Cortical_lobule, MP:0011382] +synonym: "cortical lobule of kidney" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis] +synonym: "kidney lobule" EXACT [MP:0011382] +synonym: "lobuli corticales renis" RELATED LATIN [http://en.wikipedia.org/wiki/Cortical_lobule] +synonym: "lobulus corticalis renalis" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis] +synonym: "lobulus renalis" EXACT [] +synonym: "renal cortical lobule" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis] +synonym: "renculus" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis] +synonym: "reniculus" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis] +synonym: "renunculus" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis] +xref: Cortical:lobule +xref: FMA:17670 +xref: http://www.snomedbrowser.com/Codes/Details/361330004 +is_a: UBERON:0009911 ! lobule +intersection_of: UBERON:0009911 ! lobule +intersection_of: part_of UBERON:0002113 ! kidney +relationship: contributes_to_morphology_of UBERON:0002113 ! kidney +relationship: has_part UBERON:0001285 ! nephron +relationship: has_part UBERON:0009883 ! medullary ray +relationship: part_of UBERON:0009913 {source="FMA"} ! renal lobe + +[Term] +id: UBERON:0009916 +name: wall of ureter +def: "An anatomical wall that is part of a ureter." [OBOL:automatic] +synonym: "ureteral wall" EXACT [FMA:15888] +xref: FMA:15888 +xref: http://www.snomedbrowser.com/Codes/Details/279397004 +is_a: UBERON:0000060 ! anatomical wall +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0000056 ! ureter +relationship: has_part UBERON:0005742 ! adventitia +relationship: has_part UBERON:0006660 ! muscular coat +relationship: part_of UBERON:0000056 ! ureter + +[Term] +id: UBERON:0009917 +name: kidney corticomedullary boundary +def: "The region demarcating the renal medulla from the surrounding cortex; end-stage renal failure may be associated with loss of the normal corticomedullary boundary" [MP:0011376] +subset: pheno_slim +xref: EMAPA:37886 {source="MA:th"} +is_a: UBERON:0007651 ! anatomical junction +intersection_of: UBERON:0007651 ! anatomical junction +intersection_of: adjacent_to UBERON:0000362 ! renal medulla +intersection_of: adjacent_to UBERON:0001225 ! cortex of kidney +relationship: adjacent_to UBERON:0000362 ! renal medulla +relationship: adjacent_to UBERON:0001225 ! cortex of kidney +relationship: contributes_to_morphology_of UBERON:0002113 ! kidney +relationship: part_of UBERON:0002113 {source="MP"} ! kidney + +[Term] +id: UBERON:0009918 +name: retrotrapezoid nucleus +def: "The loose collection of neurons that reside in the rostral medulla close to the medullary surface, ventral and immediately caudal of nVII, that are crucial for CO2 sensing in the brain" [MP:0011406] +subset: pheno_slim +xref: DHBA:12531 +xref: DMBA:17327 +xref: MA:0003022 +is_a: UBERON:0007635 ! nucleus of medulla oblongata + +[Term] +id: UBERON:0009919 +name: ureter smooth muscle +def: "The smooth muscle tissue surrounding the epithelium of the ureter" [MP:0011426] +subset: pheno_slim +synonym: "ureteral smooth muscle" EXACT [MP:0011426] +synonym: "ureteral smooth muscle layer" EXACT [EMAPA:28844] +xref: EMAPA:28811 +is_a: UBERON:0001135 ! smooth muscle tissue +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0000056 ! ureter +relationship: contributes_to_morphology_of UBERON:0000056 ! ureter +relationship: part_of UBERON:0006855 ! muscular coat of ureter + +[Term] +id: UBERON:0009920 +name: optic neural crest +xref: EHDAA2:0001315 +xref: EHDAA:1122 +is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0007530 {source="EHDAA2"} ! migrating mesenchyme population + +[Term] +id: UBERON:0009921 +name: hypophyseal tube +is_a: UBERON:0000025 ! tube + +[Term] +id: UBERON:0009948 +name: clavicular air sac +xref: http://www.snomedbrowser.com/Codes/Details/2574004 +is_a: UBERON:0009060 ! air sac + +[Term] +id: UBERON:0009949 +name: humeral diverticulum of clavicular air sac +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010000 ! multicellular anatomical structure +relationship: continuous_with UBERON:0009948 ! clavicular air sac +relationship: part_of UBERON:0000976 ! humerus + +[Term] +id: UBERON:0009950 +name: olfactory bulb plexiform layer +synonym: "plexiform layer" BROAD [NLXANAT:20090405] +xref: NLXANAT:20090405 +is_a: UBERON:0004001 {source="NIFSTD"} ! olfactory bulb layer + +[Term] +id: UBERON:0009951 +name: main olfactory bulb +def: "The main olfactory bulb has a multi-layered cellular architecture. In order from surface to the center the layers are: Glomerular layer, External plexiform layer, Mitral cell layer, Internal plexiform layer, Granule cell layer[WP]." [http://en.wikipedia.org/wiki/Olfactory_bulb#Main_olfactory_bulb] +xref: BAMS:MOB +xref: Main_olfactory_bulb +xref: MBA:507 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002264 {source="cjm"} ! olfactory bulb + +[Term] +id: UBERON:0009952 +name: dentate gyrus subgranular zone +def: "A narrow layer of cells located between the granule cell layer and hilus of the dentate gyrus, where adult neurogenesis occurs." [http://en.wikipedia.org/wiki/Subgranular_zone] +synonym: "SGZ" BROAD ABBREVIATION [] +synonym: "subgranular zone" EXACT [] +synonym: "subgranular zone of dentate gyrus" EXACT [] +xref: EMAPA:35831 +xref: MA:0003149 +xref: MBA:10702 +xref: Subgranular:zone +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation + +[Term] +id: UBERON:0009953 +name: post-embryonic organism +def: "A multicellular organism that existence_starts_with a post-embryonic stage." [OBOL:automatic] +synonym: "post-hatching organism" NARROW [https://orcid.org/0000-0002-6601-2165] +synonym: "post-natal organism" NARROW [https://orcid.org/0000-0002-6601-2165] +synonym: "postnatal mouse" NARROW [MA:0002405] +synonym: "postnatal organism" EXACT [] +synonym: "TS28 mouse" NARROW [MA:0002405] +xref: MA:0002405 +is_a: UBERON:0000468 ! multicellular organism +intersection_of: UBERON:0000468 ! multicellular organism +intersection_of: existence_starts_with UBERON:0000092 ! post-embryonic stage +relationship: existence_starts_with UBERON:0000092 ! post-embryonic stage + +[Term] +id: UBERON:0009954 +name: vomeronasal system +def: "A vertebrate nasal chemosensory system that is responsible for detecting intraspecific pheromonal cues as well as environmental odorants" [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0001032 ! sensory system +relationship: part_of UBERON:0005725 ! olfactory system + +[Term] +id: UBERON:0009955 +name: neurogenic placode +def: "Cranial ectodermal placode with potential to develop into a component of the nervous system, such as nerves or ganglia." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/11523831] +subset: efo_slim +synonym: "neurogenic placodes" EXACT PLURAL [ZFA:0001309] +synonym: "placodae neurogenicae" RELATED LATIN [http://en.wikipedia.org/wiki/Neurogenic_placodes] +xref: EFO:0003460 +xref: Neurogenic:placodes +xref: TAO:0001309 +xref: XAO:0004620 +xref: ZFA:0001309 +is_a: UBERON:0002546 {source="cjm"} ! cranial placode +disjoint_from: UBERON:0011814 ! non-neurogenic ectodermal placode +relationship: develops_from UBERON:2007013 ! preplacodal ectoderm +relationship: has_potential_to_developmentally_contribute_to UBERON:0001714 ! cranial ganglion +relationship: has_potential_to_developmentally_contribute_to UBERON:0001785 ! cranial nerve + +[Term] +id: UBERON:0009956 +name: corpuscle of de Quatrefage +def: "A specialised sensory organ located in the subepidermal connective tissue at the rostral end of late larval and adult amphioxus. They consist of between 1 and 4 nerve cells with axons, each with 2 cilia, surrounded by up to 7 sheath cells. The cilia extend into a protrusion of the basal lamina which surrounds each corpuscle. The axonal process contributes to the rostral nerve." [http://www.ncbi.nlm.nih.gov/pubmed/11523831] +synonym: "organ of de Quatrefage" EXACT [] +is_a: UBERON:0000020 ! sense organ + +[Term] +id: UBERON:0009957 +name: ciliated pit +comment: Development: joins with Hatschek's diverticulum to form Hatschek's pit in the adult. Location: anterior to the mouth. +synonym: "pre-oral pit" RELATED [] +is_a: UBERON:0006846 ! surface groove + +[Term] +id: UBERON:0009958 +name: bladder lumen +def: "A anatomical space that is enclosed by a urinary bladder." [OBOL:automatic] +synonym: "bladder cavity" EXACT [FMA:15924] +synonym: "cavity of urinary bladder" EXACT [FMA:15924] +synonym: "lumen of urinary bladder" EXACT [FMA:15924] +synonym: "urinary bladder lumen" EXACT [FMA:15924] +xref: EHDAA2:0004058 +xref: FMA:15924 +xref: galen:UrinaryBladderCavity +xref: http://www.snomedbrowser.com/Codes/Details/279405003 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 {source="FMA"} ! anatomical space +intersection_of: luminal_space_of UBERON:0001255 {source="FMA"} ! urinary bladder +relationship: develops_from UBERON:0009844 {source="EHDAA2"} ! urogenital sinus lumen +relationship: luminal_space_of UBERON:0001255 ! urinary bladder +relationship: part_of UBERON:0001255 {source="FMA"} ! urinary bladder + +[Term] +id: UBERON:0009959 +name: lumen of oropharynx +def: "A anatomical space that is enclosed by a oropharynx." [OBOL:automatic] +synonym: "oropharyngeal cavity" EXACT [EHDAA2:0004556] +synonym: "oropharynx lumen" EXACT [FMA:55095] +xref: EHDAA2:0004556 +xref: FMA:55095 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0001729 ! oropharynx +relationship: develops_from UBERON:0006272 {source="EHDAA2"} ! oronasal cavity +relationship: luminal_space_of UBERON:0001729 ! oropharynx +relationship: part_of UBERON:0001729 ! oropharynx +relationship: part_of UBERON:0001731 ! cavity of pharynx + +[Term] +id: UBERON:0009960 +name: esophagus smooth muscle circular layer +def: "A circular muscle layer of muscular coat that is part of a esophagus." [OBOL:automatic] +synonym: "circular muscle layer of esophagus" EXACT [FMA:67605] +synonym: "esophagus smooth muscle circular layer" RELATED [MA:0001574] +synonym: "inner circular muscle layer of esophagus" EXACT [FMA:67605] +xref: EMAPA:37523 {source="MA:th"} +xref: FMA:67605 +xref: MA:0001574 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0012368 ! circular muscle layer of muscular coat +intersection_of: UBERON:0012368 ! circular muscle layer of muscular coat +intersection_of: part_of UBERON:0001043 ! esophagus +relationship: part_of UBERON:0002112 {source="MA"} ! smooth muscle of esophagus + +[Term] +id: UBERON:0009961 +name: esophagus smooth muscle longitudinal layer +synonym: "esophagus smooth muscle longitudinal layer" RELATED [MA:0001575] +synonym: "longitudinal muscle layer of esophagus" EXACT [FMA:63573] +synonym: "outer longitudinal muscle layer of esophagus" EXACT [FMA:63573] +xref: EMAPA:37524 {source="MA:th"} +xref: FMA:63573 +xref: MA:0001575 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0012369 ! longitudinal muscle layer of muscular coat +relationship: part_of UBERON:0002112 {source="MA"} ! smooth muscle of esophagus + +[Term] +id: UBERON:0009962 +name: excretory gland +def: "A gland that discharges its secretion through a duct opening on an internal or external surface of the body, as a lacrimal gland." [Dorlands_Medical_Dictionary:MerckSource] +synonym: "renal gland" NARROW [https://github.com/obophenotype/uberon/issues/1450] +xref: BTO:0000431 +is_a: UBERON:0002530 {source="BTO"} ! gland +relationship: part_of UBERON:0001008 ! renal system + +[Term] +id: UBERON:0009963 +name: antennal gland +def: "Excretory gland situated in the basal article of the antennal peduncle. It functions to rehulate ionic balance" [BTO:0000075, https://orcid.org/0000-0002-6601-2165] +synonym: "green gland" EXACT [] +xref: BTO:0000075 +is_a: UBERON:0009962 {source="BTO"} ! excretory gland + +[Term] +id: UBERON:0009964 +name: crustacean maxillary gland +def: "Excretory organ in maxillary segment with duct opening on maxilla." [http://crustacea.nhm.org/glossary/define.html] +is_a: UBERON:0009962 {source="BTO"} ! excretory gland + +[Term] +id: UBERON:0009965 +name: coxal gland +def: "A gland found in some arthropods, for collecting and excreting urine. The gland comprises an end sac (saccule), a long duct (labyrinth) and a terminal bladder (reservoir). There is generally only one pair (two in some spiders), and they open on the coxae of the walking legs[WP]." [http://en.wikipedia.org/wiki/Coxal_gland] +xref: Coxal:gland +xref: SPD:0000116 +xref: TADS:0000080 +is_a: UBERON:0009962 {source="BTO"} ! excretory gland + +[Term] +id: UBERON:0009966 +name: internodal tract +def: "A conducting pathway in the conducting tissue of heart through which electrical activity spreads from the SA node to the AV node." [http://en.wikipedia.org/wiki/Electrical_conduction_system_of_the_heart] +synonym: "interatrial conduction tract" EXACT [] +synonym: "internodal conduction tract" EXACT [] +synonym: "internodal fasciculus" EXACT [FMA:9479] +synonym: "internodal tract muscle tissue" EXACT [FMA:9479] +xref: FMA:9479 +is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium +is_a: UBERON:0010131 {source="cjm"} ! conducting tissue of heart +relationship: part_of UBERON:0002350 {source="FMA"} ! conducting system of heart + +[Term] +id: UBERON:0009967 +name: spleen venous sinus +synonym: "sinus lienalis" EXACT LATIN [FMA:TA] +synonym: "sinus splenicus" EXACT LATIN [FMA:TA] +synonym: "splenic sinus" EXACT [FMA:62815] +synonym: "venous sinus of red pulp of spleen" EXACT [FMA:62815] +xref: EMAPA:37751 {source="MA:th"} +xref: FMA:62815 +xref: http://linkedlifedata.com/resource/umls/id/C1179415 +xref: MA:0000761 +xref: NCIT:C33605 +xref: UMLS:C1179415 {source="ncithesaurus:Splenic_Sinus"} +is_a: UBERON:0003497 ! abdomen blood vessel +is_a: UBERON:0006615 {source="cjm"} ! venous sinus +relationship: part_of UBERON:0001250 {source="MA"} ! red pulp of spleen +relationship: seeAlso UBERON:0003910 ! splenic sinusoid + +[Term] +id: UBERON:0009968 +name: primitive superior sagittal sinus +xref: EHDAA2:0001527 +xref: EHDAA:9876 +xref: EMAPA:18636 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0006615 {source="cjm"} ! venous sinus +relationship: develops_from UBERON:0006282 {source="EHDAA2"} ! primary head vein +relationship: part_of UBERON:0005486 {source="EHDAA2"} ! venous dural sinus + +[Term] +id: UBERON:0009969 +name: statoacoustic epithelium +synonym: "stato-acoustic epithelium" EXACT [FMA:64804] +xref: FMA:64804 +is_a: UBERON:0006934 {source="FMA"} ! sensory epithelium + +[Term] +id: UBERON:0009970 +name: epithelium of pancreatic duct +def: "An epithelium that is part of a pancreatic duct." [OBOL:automatic] +subset: efo_slim +synonym: "pancreatic duct epithelium" EXACT [FMA:67681] +synonym: "pancreatic ductal epithelium" EXACT [FMA:67681] +xref: EFO:0002556 +xref: FMA:67681 +is_a: UBERON:0010371 ! ecto-epithelium +is_a: UBERON:0013697 ! exocrine pancreas epithelium +is_a: UBERON:0034969 ! epithelial layer of duct +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0007329 ! pancreatic duct +relationship: part_of UBERON:0007329 ! pancreatic duct + +[Term] +id: UBERON:0009971 +name: principal gastric gland +def: "one of the gastric glands that secretes the hydrochloric acid of the gastric juice[Stedman's]." [http://www.drugs.com/dict/acid-gland.html, MP:0003892] +synonym: "acid gland" EXACT [http://www.drugs.com/dict/acid-gland.html] +synonym: "gastric follicle" RELATED [MP:0003892] +synonym: "gastric gland" BROAD [MP:0003892] +synonym: "glandula gastrica propria" EXACT [FMA:14921] +synonym: "main gastric gland" EXACT [FMA:14921] +synonym: "oxyntic gland" EXACT [FMA:14921] +synonym: "principal gland of fundus of stomach" EXACT [FMA:14923] +synonym: "Wassman gland" RELATED [MP:0003892] +xref: FMA:14921 +xref: FMA:14923 +is_a: UBERON:0000325 {source="FMA"} ! gastric gland + +[Term] +id: UBERON:0009972 +name: ureteropelvic junction +def: "The junction between the ureter and the renal pelvis of the kidney" [MP:0011487] +subset: pheno_slim +synonym: "pelviureteric junction" EXACT [FMA:15898] +synonym: "pelvoureteric junction" EXACT [] +xref: EMAPA:37782 {source="MA:th"} +xref: FMA:15898 +xref: http://www.snomedbrowser.com/Codes/Details/264130006 +xref: MA:0003021 +xref: NCIT:C106203 +is_a: UBERON:0007651 ! anatomical junction +intersection_of: UBERON:0007651 ! anatomical junction +intersection_of: connects UBERON:0000056 ! ureter +intersection_of: connects UBERON:0001224 ! renal pelvis +relationship: connects UBERON:0000056 ! ureter +relationship: connects UBERON:0001224 ! renal pelvis +relationship: contributes_to_morphology_of UBERON:0001008 ! renal system +relationship: part_of UBERON:0001008 {source="MP"} ! renal system + +[Term] +id: UBERON:0009973 +name: ureterovesical junction +def: "The valve-like structure found at the site of entry of the ureter into the urinary bladder, normally displays an oblique angulation through the detrusor to avoid reflux of urine up the ureters and the kidney" [MP:0011488] +subset: pheno_slim +synonym: "vesico-ureteral junction" EXACT [MA:0003020] +synonym: "vesico-ureteric junction" EXACT [] +synonym: "vesicoureteric junction" EXACT [] +xref: EMAPA:37783 {source="MA:th"} +xref: FMA:15899 +xref: http://www.snomedbrowser.com/Codes/Details/261187001 +xref: MA:0003020 +xref: NCIT:C106202 +is_a: UBERON:0003978 ! valve +is_a: UBERON:0007651 ! anatomical junction +intersection_of: UBERON:0007651 ! anatomical junction +intersection_of: connects UBERON:0000056 ! ureter +intersection_of: connects UBERON:0001255 ! urinary bladder +relationship: connects UBERON:0000056 ! ureter +relationship: connects UBERON:0001255 ! urinary bladder +relationship: contributes_to_morphology_of UBERON:0001008 ! renal system +relationship: part_of UBERON:0001008 {source="MP"} ! renal system + +[Term] +id: UBERON:0009974 +name: lumen of Rathke's pouch +def: "An anatomical cavity that surrounded_by a Rathke's pouch." [OBOL:automatic] +synonym: "Rathkes pouch invagination" NARROW [EHDAA2:0004138] +xref: EHDAA2:0004138 +xref: EMAPA:25037 +is_a: UBERON:0005082 {source="EHDAA2"} ! tube lumen +is_a: UBERON:0007473 ! lumen of epithelial sac +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0005356 ! Rathke's pouch +relationship: luminal_space_of UBERON:0005356 ! Rathke's pouch +relationship: part_of UBERON:0005356 ! Rathke's pouch +relationship: surrounded_by UBERON:0012287 {source="EHDAA2-modified"} ! Rathkes pouch epithelium + +[Term] +id: UBERON:0009975 +name: remnant of lumen of Rathke's pouch +synonym: "adenohypophysis invagination" RELATED [EHDAA2:0004139] +xref: EHDAA2:0004139 +is_a: UBERON:0005082 {source="EHDAA2"} ! tube lumen +relationship: develops_from UBERON:0009974 ! lumen of Rathke's pouch +relationship: part_of UBERON:0002196 ! adenohypophysis + +[Term] +id: UBERON:0009976 +name: hypothalamo-hypophyseal system +def: "An intrinsic circulatory network that transports hormones from the median eminence of the hypothalamus to the adenohypophysis." [http://en.wikipedia.org/wiki/Hypophyseal_portal_system, ISBN:0471888893] +synonym: "hypophyseal portal system" EXACT [http://en.wikipedia.org/wiki/Hypophyseal_portal_system] +synonym: "hypothalamic hypophyseal portal system" EXACT [ISBN:0471888893] +synonym: "hypothalamo hypophyseal system" RELATED [MESH:A06.407.747.357] +synonym: "hypothalamo-hypophyseal system" RELATED [MESH:A06.407.747.357] +synonym: "hypothalamohypophyseal portal system" EXACT [] +synonym: "portal veins of hypophysis" RELATED [FMA:70860] +synonym: "set of portal veins of hypophysis" RELATED [FMA:70860] +synonym: "venae portales hypophysiales" EXACT [http://en.wikipedia.org/wiki/Hypophyseal_portal_system] +synonym: "venae portales hypophysiales" RELATED LATIN [http://en.wikipedia.org/wiki/Hypophyseal_portal_system] +xref: FMA:70860 +xref: http://en.wikipedia.org/wiki/Hypophyseal_portal_system +xref: http://linkedlifedata.com/resource/umls/id/C1512570 +xref: MESH:A06.407.747.357 +xref: NCIT:C32759 +xref: UMLS:C1512570 {source="ncithesaurus:Hypothalamohypophyseal_Portal_System"} +is_a: UBERON:0005806 ! portal system +relationship: connects UBERON:0001898 ! hypothalamus +relationship: connects UBERON:0002196 ! adenohypophysis +relationship: connects UBERON:0002197 ! median eminence of neurohypophysis +relationship: part_of UBERON:0000949 ! endocrine system + +[Term] +id: UBERON:0009977 +name: natal tooth +def: "Predeciduous teeth present at birth. They may be well formed and normal or may represent hornified epithelial structures without roots. They are found on the gingivae over the crest of the ridge and arise from accessory buds of the dental lamina ahead of the deciduous buds or from buds of the accessory dental lamina. (From Jablonski, Dictionary of Dentistry, 1992)" [MESH:A14.254.860.700.500] +synonym: "natal teeth" EXACT PLURAL [GAID:1267] +synonym: "natal tooth" RELATED [GAID:1267] +xref: GAID:1267 +xref: MESH:A14.254.860.700.500 +is_a: UBERON:0007115 {source="GAID"} ! deciduous tooth + +[Term] +id: UBERON:0009978 +name: epicondyle +def: "." [http://en.wikipedia.org/wiki/Epicondyle] +comment: grouping class that collected the entepicondyles and epicondyles icondyles of humerus and femur +subset: grouping_class +synonym: "epicondylus" RELATED LATIN [http://en.wikipedia.org/wiki/Epicondyle] +xref: FMA:75435 +xref: galen:Epicondyle +xref: http://en.wikipedia.org/wiki/Epicondyle +xref: http://linkedlifedata.com/resource/umls/id/C0222681 +xref: http://www.snomedbrowser.com/Codes/Details/333209006 +xref: NCIT:C69300 +xref: UMLS:C0222681 {source="ncithesaurus:Epicondyle"} +is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ + +[Term] +id: UBERON:0009979 +name: condyle +def: "An articular prominence of a bone, typically present in pairs, resembling a pair of knuckles. Examples: Condyle of humerus, condyle of femur." [http://www.merriam-webster.com/dictionary/condyle, PHENOSCAPE:ad] +synonym: "condylus" EXACT LATIN [http://en.wikipedia.org/wiki/Condyle_(anatomy)] +xref: Condyle:(anatomy) +xref: FMA:75434 +xref: galen:Condyle +xref: http://linkedlifedata.com/resource/umls/id/C0524414 +xref: http://www.snomedbrowser.com/Codes/Details/91737009 +xref: NCIT:C83002 +xref: TAO:0002259 +xref: UMLS:C0524414 {source="ncithesaurus:Condyle"} +is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ + +[Term] +id: UBERON:0009980 +name: condyle of femur +def: "A condyle that is part of a distal epiphysis of femur." [OBOL:automatic] +synonym: "condylus femoralis" EXACT [] +synonym: "condylus femoris" EXACT [] +synonym: "femoral condyle" EXACT [] +synonym: "fibular condyle" RELATED [AAO:0000900] +xref: AAO:0000900 +xref: FMA:32855 +xref: galen:FemoralCondyle +xref: http://www.snomedbrowser.com/Codes/Details/304912006 +xref: NCIT:C114186 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +is_a: UBERON:0009979 ! condyle +intersection_of: UBERON:0009979 ! condyle +intersection_of: part_of UBERON:0004406 ! distal epiphysis of femur +relationship: part_of UBERON:0004406 ! distal epiphysis of femur + +[Term] +id: UBERON:0009984 +name: medial condyle of femur +def: "The medial condyle is one of the two projections on the lower extremity of femur. The medial condyle is larger than the lateral (outer) condyle due to more weight bearing caused by the center of gravity being medial to the knee. On the posterior surface of the condyle the linea aspera (a ridge running down the posterior shaft of the femur) turns into the medial supracondylar ridge. The outermost protrusion on the medial surface of the medial condyle is referred to as the 'medial epicondyle' and can be palpated by running fingers medially from the patella with the knee in flexion." [http://en.wikipedia.org/wiki/Medial_condyle_of_femur] +synonym: "c. medialis femoris" RELATED [http://en.wikipedia.org/wiki/Medial_condyle_of_femur] +synonym: "c. medialis femoris" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_condyle_of_femur] +synonym: "condylus medialis femoris" EXACT LATIN [FMA:32858, FMA:TA] +synonym: "medial condyle of the femur" RELATED [http://en.wikipedia.org/wiki/Medial_condyle_of_femur] +synonym: "medial femoral condyle" RELATED [FMA:32858] +xref: FMA:32858 +xref: http://en.wikipedia.org/wiki/Medial_condyle_of_femur +xref: http://www.snomedbrowser.com/Codes/Details/182056007 +is_a: UBERON:0009980 ! condyle of femur +disjoint_from: UBERON:0009985 {source="lexical"} ! lateral condyle of femur + +[Term] +id: UBERON:0009985 +name: lateral condyle of femur +def: "The lateral condyle is one of the two projections on the lower extremity of femur. It is the more prominent and is the broader both in its antero-posterior and transverse diameters" [http://en.wikipedia.org/wiki/Lateral_condyle_of_femur] +synonym: "c. lateralis femoris" RELATED [http://en.wikipedia.org/wiki/Lateral_condyle_of_femur] +synonym: "c. lateralis femoris" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_condyle_of_femur] +synonym: "condylus lateralis femoris" EXACT LATIN [FMA:32859, FMA:TA] +synonym: "lateral condyle of the femur" RELATED [http://en.wikipedia.org/wiki/Lateral_condyle_of_femur] +synonym: "lateral femoral condyle" RELATED [FMA:32859] +xref: FMA:32859 +xref: http://en.wikipedia.org/wiki/Lateral_condyle_of_femur +xref: http://www.snomedbrowser.com/Codes/Details/182057003 +is_a: UBERON:0009980 ! condyle of femur + +[Term] +id: UBERON:0009986 +name: lateral epicondyle of femur +def: "The lateral epicondyle of the femur, smaller and less prominent than the medial epicondyle, gives attachment to the fibular collateral ligament of the knee-joint. Directly below it is a small depression from which a smooth well-marked groove curves obliquely upward and backward to the posterior extremity of the condyle." [http://en.wikipedia.org/wiki/Lateral_epicondyle_of_the_femur] +synonym: "e. lateralis femoris" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_epicondyle_of_the_femur] +synonym: "epicondylus lateralis (femur)" EXACT [FMA:32867] +synonym: "epicondylus lateralis femoris" EXACT LATIN [FMA:32867, FMA:TA] +synonym: "lateral femoral epicondyle" RELATED [http://en.wikipedia.org/wiki/Lateral_epicondyle_of_the_femur] +xref: FMA:32867 +xref: galen:LateralFemoralEpicondyle +xref: http://en.wikipedia.org/wiki/Lateral_epicondyle_of_the_femur +xref: http://www.snomedbrowser.com/Codes/Details/209275007 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +is_a: UBERON:0009978 {source="FMA"} ! epicondyle +disjoint_from: UBERON:0009987 {source="lexical"} ! medial epicondyle of femur +relationship: part_of UBERON:0009985 {source="FMA"} ! lateral condyle of femur + +[Term] +id: UBERON:0009987 +name: medial epicondyle of femur +def: "The medial epicondyle of the femur is a bony protrusion located on the medial side of the bone's distal end. Located above the medial condyle, it bears an elevation, the adductor tubercle, which serves for the attachment of the superficial part, or 'tendinous insertion', of the adductor magnus. This tendinous part here forms an intermuscular septum which forms the medial separation between the thigh's flexors and extensors. Behind it, and proximally to the medial condyle is a rough impression which gives origin to the medial head of the Gastrocnemius." [http://en.wikipedia.org/wiki/Medial_epicondyle_of_the_femur] +synonym: "epicondylus medialis (femur)" EXACT [FMA:32864] +synonym: "epicondylus medialis femoris" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_epicondyle_of_the_femur] +synonym: "medial femoral epicondyle" RELATED [http://en.wikipedia.org/wiki/Medial_epicondyle_of_the_femur] +xref: FMA:32864 +xref: galen:MedialFemoralEpicondyle +xref: http://en.wikipedia.org/wiki/Medial_epicondyle_of_the_femur +xref: http://www.snomedbrowser.com/Codes/Details/209172001 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +is_a: UBERON:0009978 {source="FMA"} ! epicondyle +relationship: part_of UBERON:0009984 {source="FMA"} ! medial condyle of femur + +[Term] +id: UBERON:0009988 +name: condyle of humerus +def: "The distal end of the humerus, including the trochlea, capitulum and the olecranon, coronoid and radial fossae" [http://www.medilexicon.com/medicaldictionary.php?t=19715] +synonym: "condylus humeri" EXACT LATIN [] +synonym: "humeral condyle" EXACT [FMA:23377] +xref: FMA:23377 +xref: http://www.snomedbrowser.com/Codes/Details/361778001 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +is_a: UBERON:0009979 ! condyle +intersection_of: UBERON:0009979 ! condyle +intersection_of: part_of UBERON:0004404 ! distal epiphysis of humerus +relationship: part_of UBERON:0004404 ! distal epiphysis of humerus + +[Term] +id: UBERON:0009989 +name: condyle of tibia +def: "One of the lateral or medial condyles of the tibia." [http://en.wikipedia.org/wiki/Tibial_condyle] +synonym: "tibial condyle" EXACT [AAO:0000899] +xref: AAO:0000899 +xref: http://www.snomedbrowser.com/Codes/Details/182062002 +xref: Tibial:condyle +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +is_a: UBERON:0009979 ! condyle +intersection_of: UBERON:0009979 ! condyle +intersection_of: part_of UBERON:0008772 ! proximal epiphysis of tibia +relationship: part_of UBERON:0008772 ! proximal epiphysis of tibia + +[Term] +id: UBERON:0009990 +name: medial condyle of tibia +def: "The medial condyle is the medial portion of the upper extremity of tibia. It is the site of insertion for the Semimembranosus muscle[WP]." [http://en.wikipedia.org/wiki/Medial_condyle_of_tibia] +synonym: "c. medialis tibiae" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_condyle_of_tibia] +synonym: "condylus medialis (tibia)" EXACT [FMA:35445] +synonym: "condylus medialis tibiae" EXACT LATIN [FMA:35445, FMA:TA] +synonym: "medial condyle of the tibia" RELATED [http://en.wikipedia.org/wiki/Medial_condyle_of_tibia] +synonym: "medial tibial condyle" RELATED [http://en.wikipedia.org/wiki/Medial_condyle_of_tibia] +xref: FMA:35445 +xref: galen:MedialTibialCondyle +xref: http://en.wikipedia.org/wiki/Medial_condyle_of_tibia +xref: http://www.snomedbrowser.com/Codes/Details/182066004 +is_a: UBERON:0009989 ! condyle of tibia +disjoint_from: UBERON:0009991 {source="lexical"} ! lateral condyle of tibia + +[Term] +id: UBERON:0009991 +name: lateral condyle of tibia +def: "The lateral condyle is the lateral portion of the upper extremity of tibia. It serves as the insertion for the Biceps femoris muscle[WP]." [http://en.wikipedia.org/wiki/Lateral_condyle_of_tibia] +synonym: "c. lateralis tibiae" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_condyle_of_tibia] +synonym: "condylus lateralis (tibia)" EXACT [FMA:35448] +synonym: "condylus lateralis tibiae" EXACT LATIN [FMA:35448, FMA:TA] +xref: FMA:35448 +xref: http://en.wikipedia.org/wiki/Lateral_condyle_of_tibia +xref: http://www.snomedbrowser.com/Codes/Details/182067008 +is_a: UBERON:0009989 ! condyle of tibia + +[Term] +id: UBERON:0009992 +name: cranial sensory ganglion +def: "The ganglion found on the root of each cranial nerve, containing the cell bodies of afferent (sensory) neurons." [http://medical-dictionary.thefreedictionary.com/cranial+sensory+ganglion] +comment: ontology notes: has no subtypes in FMA +synonym: "cranial nerve sensory ganglion" EXACT [FMA:5887] +synonym: "ganglion sensorium cranialium" EXACT [FMA:5887] +synonym: "ganglion sensorium nervi cranialis" EXACT LATIN [FMA:5887, FMA:TA] +synonym: "sensory ganglion of cranial nerve" EXACT [FMA:5887] +xref: FMA:5887 +is_a: UBERON:0001714 {source="cjm"} ! cranial ganglion +is_a: UBERON:0001800 {source="FMA"} ! sensory ganglion + +[Term] +id: UBERON:0009993 +name: primary chorionic villus +def: "A chorionic villus that is a solid outgrowth of the cytotrophoblast that protrudes into the syncytiotrophoblast." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] +xref: http://linkedlifedata.com/resource/umls/id/C1514421 +xref: NCIT:C34261 +xref: UMLS:C1514421 {source="ncithesaurus:Primary_Chorionic_Villus"} +is_a: UBERON:0007106 {source="ncithesaurus"} ! chorionic villus + +[Term] +id: UBERON:0009994 +name: secondary chorionic villus +def: "A chorionic villus that is has a core of loose connective tissue, which in humans grows into the primary villi about the third week of development." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] +xref: http://linkedlifedata.com/resource/umls/id/C1519213 +xref: NCIT:C34291 +xref: UMLS:C1519213 {source="ncithesaurus:Secondary_Chorionic_Villus"} +is_a: UBERON:0007106 {source="ncithesaurus"} ! chorionic villus + +[Term] +id: UBERON:0009995 +name: tertiary chorionic villus +def: "Tertiary chorionic villi contain embryonic blood vessels that develop from mesenchymal cells in the loose connective tissue core. These blood vessels connect up with vessels that develop in the chorion and connecting stalk and begin to circulate embryonic blood about the third week of development in humans." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] +xref: http://linkedlifedata.com/resource/umls/id/C1515280 +xref: NCIT:C34310 +xref: UMLS:C1515280 {source="ncithesaurus:Tertiary_Chorionic_Villus"} +is_a: UBERON:0007106 {source="ncithesaurus"} ! chorionic villus + +[Term] +id: UBERON:0010000 +name: multicellular anatomical structure +def: "An anatomical structure that has more than one cell as a part." [CARO:0010000] +subset: upper_level +synonym: "multicellular structure" EXACT [FBbt:00100313] +xref: CARO:0010000 +xref: FBbt:00100313 +is_a: UBERON:0000061 ! anatomical structure + +[Term] +id: UBERON:0010001 +name: cell cluster organ +def: "A small cluster of cells of various types which form a discrete structure, largely delimited by a morphological boundary and whose components work together to make the whole structure capable of a specific function." [CARO:0010001] +comment: Examples include arthropod sensilla. +subset: upper_level +xref: CARO:0010001 +xref: FBbt:00007229 +is_a: UBERON:0000062 {source="CARO"} ! organ +is_a: UBERON:0034922 {source="CARO"} ! cell cluster +disjoint_from: UBERON:0011216 {source="FBbt"} ! organ system subdivision +disjoint_from: UBERON:0014732 {source="CARO"} ! compound cell cluster organ + +[Term] +id: UBERON:0010002 +name: pulmonary neuroendocrine body +def: "corpuscular, organoid structures composed of PNECs, found as distinctive innervated clusters only within intrapulmonary airways, where they appear concentrated at airway branch points; NEBs reach from the basement membrane to the airway lumen and are thought to function as oxygen sensors." [MP:0010921] +subset: pheno_slim +synonym: "NEB" EXACT [MP:0010921] +synonym: "pulmonary neuroepithelial body" EXACT [MP:0010921] +xref: EMAPA:37943 {source="MA:th"} +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: contributes_to_morphology_of UBERON:0000115 ! lung epithelium +relationship: part_of UBERON:0000115 ! lung epithelium + +[Term] +id: UBERON:0010005 +name: placental labyrinth villous +def: "The vascularized and branched structures arising from the rodent trophoblast-derived epithelium that allow an increase its surface area for the efficient exchange of nutrients and wastes between the maternal and fetal circulation" [MP:0011522] +subset: pheno_slim +synonym: "placental labyrinth villi" RELATED PLURAL [] +synonym: "villous of placental labyrinth" EXACT [] +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: contributes_to_morphology_of UBERON:0003946 ! placenta labyrinth +relationship: part_of UBERON:0003946 {source="MP"} ! placenta labyrinth + +[Term] +id: UBERON:0010006 +name: placenta intervillous maternal lacunae +def: "The spaces of the placenta occupied by maternal blood, into which the fetal labyrinth villi project" [MP:0011525] +subset: pheno_slim +is_a: UBERON:0002553 ! anatomical cavity +is_a: UBERON:0012466 ! extraembryonic cavity +relationship: contributes_to_morphology_of UBERON:0003946 ! placenta labyrinth +relationship: part_of UBERON:0003946 {source="MP"} ! placenta labyrinth + +[Term] +id: UBERON:0010007 +name: placenta fetal blood space +def: "The spaces of the placenta occupied by fetal blood, primarily within the fetal labyrinth villi" [MP:0011526] +subset: pheno_slim +is_a: UBERON:0002553 ! anatomical cavity +is_a: UBERON:0012466 ! extraembryonic cavity +relationship: contributes_to_morphology_of UBERON:0003946 ! placenta labyrinth +relationship: part_of UBERON:0003946 {source="MP"} ! placenta labyrinth + +[Term] +id: UBERON:0010008 +name: placental cotyledon +def: "Round structure consisting of chorionic villi[PMID]. A separation of the decidua basalis of the placenta, separated by placental septa. Each cotyledon consists of a main stem of a chorionic villus as well as its branches and subbranches. The cotyledons receive fetal blood from chorionic vessels, which branch off cotyledon vessels into the cotyledons, which, in turn, branch into capillaries. The cotyledons are surrounded by maternal blood, which can exchange oxygen and nutrients with the fetal blood in the capillaries[WP]." [http://en.wikipedia.org/wiki/Placental_cotyledon, http://www.ncbi.nlm.nih.gov/pubmed/19829370] +synonym: "cotyledon" BROAD [] +synonym: "discoid placenta" RELATED [] +synonym: "placenta cotyledon" EXACT [] +xref: http://linkedlifedata.com/resource/umls/id/C0242769 +xref: http://www.snomedbrowser.com/Codes/Details/256491001 +xref: NCIT:C34135 +xref: Placental:cotyledon +xref: UMLS:C0242769 {source="ncithesaurus:Cotyledon"} +is_a: UBERON:0000478 ! extraembryonic structure +relationship: has_part UBERON:0007106 ! chorionic villus +relationship: part_of UBERON:0002450 ! decidua + +[Term] +id: UBERON:0010009 +name: aggregate regional part of brain +def: "A regional part of brain consisting of multiple brain regions that are not related through a simple volummetric part of hierarchy, e.g., basal ganglia[NIF]." [NLXANAT:20090509] +subset: non_informative +synonym: "set of nuclei of neuraxis" RELATED [FMA:256381] +xref: FMA:256381 +xref: NLXANAT:20090509 +is_a: UBERON:0034923 ! disconnected anatomical group +intersection_of: UBERON:0034923 ! disconnected anatomical group +intersection_of: has_member UBERON:0002616 ! regional part of brain +intersection_of: part_of UBERON:0000955 ! brain +relationship: has_member UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0000955 ! brain + +[Term] +id: UBERON:0010010 +name: basal nucleus of telencephalon +def: "A group of neurons in the basal forebrain that has wide projections to the neocortex and is rich in acetylcholine and choline acetyltransferase. It undergoes degeneration in paralysis agitans and Alzheimer's disease." [BTO:0001480] +synonym: "basal forebrain nucleus" RELATED [NeuroNames:275] +synonym: "basal magnocellular nucleus" RELATED [NeuroNames:275] +synonym: "basal magnocellular nucleus (substantia innominata)" EXACT [FMA:61887] +synonym: "basal nuclei of Meynert" EXACT [FMA:61887] +synonym: "basal nucleus" EXACT [BIRNLEX:1107] +synonym: "basal nucleus (Meynert)" RELATED [BAMS:B] +synonym: "basal nucleus of Meynert" EXACT [FMA:61887] +synonym: "basal substance of telencephalon" EXACT [FMA:61887] +synonym: "ganglion of Meynert" EXACT [FMA:61887] +synonym: "magnocellular nucleus of the pallidum" RELATED [NeuroNames:275] +synonym: "magnocellular preoptic nucleus" RELATED [NeuroNames:275] +synonym: "Meynert's nucleus" EXACT [FMA:61887] +synonym: "nucleus basalis" EXACT [BIRNLEX:1107] +synonym: "nucleus basalis (Meynert)" RELATED LATIN [NeuroNames:275] +synonym: "nucleus basalis Meynert" RELATED LATIN [NeuroNames:275] +synonym: "nucleus basalis of Meynert" EXACT [BIRNLEX:1107] +synonym: "nucleus basalis telencephali" RELATED LATIN [http://en.wikipedia.org/wiki/Nucleus_basalis_of_Meynert] +synonym: "nucleus of the horizontal limb of the diagonal band (Price-Powell)" RELATED [NeuroNames:275] +synonym: "substantia basalis telencephali" EXACT LATIN [FMA:TA] +xref: BAMS:MA +xref: BAMS:MCPO +xref: BIRNLEX:1107 +xref: BTO:0001480 +xref: DHBA:10353 +xref: FMA:61887 +xref: HBA:4308 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=275 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=275 {source="BIRNLEX:1107"} +xref: http://en.wikipedia.org/wiki/Basal_optic_nucleus_of_Meynert +xref: http://en.wikipedia.org/wiki/Nucleus_basalis_of_Meynert +xref: http://linkedlifedata.com/resource/umls/id/C0004788 +xref: http://www.snomedbrowser.com/Codes/Details/369109003 +xref: MESH:A08.186.211.730.885.105.880.100 +xref: PBA:10141 +xref: UMLS:C0004788 {source="BIRNLEX:1107"} +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0003017 {source="WP"} ! substantia innominata + +[Term] +id: UBERON:0010011 +name: collection of basal ganglia +def: "Subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum." [BIRNLEX:826] +subset: pheno_slim +synonym: "basal ganglia" EXACT [FMA:84013] +synonym: "basal ganglia set" EXACT [FMA:84013] +synonym: "basal nuclei" RELATED [] +synonym: "basal nuclei (basal ganglia)" EXACT [PBA:BN] +synonym: "cerebral nuclei" RELATED [NeuroNames:2677] +synonym: "set of basal ganglia" EXACT [FMA:84013] +synonym: "set of basal nuclei" RELATED [FMA:84013] +synonym: "subcortical nuclei" RELATED [NeuroNames:2677] +xref: BAMS:BG +xref: Basal:ganglia +xref: BIRNLEX:826 +xref: BM:Tel-BG +xref: DHBA:10331 +xref: EMAPA:32673 +xref: FMA:84013 +xref: GAID:617 +xref: HBA:4275 +xref: HBA:4276 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2677 +xref: http://linkedlifedata.com/resource/umls/id/C0004781 +xref: MA:0000184 +xref: MBA:623 +xref: MESH:A08.186.211.730.885.105 +xref: NCIT:C12447 +xref: PBA:128012596 +xref: PBA:4001 +xref: UMLS:C0004781 {source="ncithesaurus:Basal_Ganglia"} +xref: VHOG:0001696 +is_a: UBERON:0010009 {source="FMA"} ! aggregate regional part of brain +relationship: part_of UBERON:0000454 {source="FMA"} ! cerebral subcortex + +[Term] +id: UBERON:0010012 +name: upper beak +synonym: "maxillary beak" RELATED [] +synonym: "rostrum maxillare" RELATED [] +synonym: "upper mandible" RELATED SENSU [] +is_a: UBERON:0003102 ! surface structure +relationship: part_of UBERON:0001709 ! upper jaw region +relationship: part_of UBERON:0005094 ! beak + +[Term] +id: UBERON:0010013 +name: lower beak +synonym: "lower mandible" RELATED SENSU [] +synonym: "mandibular beak" RELATED [] +synonym: "rostrum mandibulare" RELATED [] +is_a: UBERON:0003102 ! surface structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001710 ! lower jaw region +relationship: part_of UBERON:0005094 ! beak + +[Term] +id: UBERON:0010014 +name: epigonal organ +def: "An elongate paired tissue ventral to the kidneys and partialy enveloping the anterior gonads in Elasmobranchii. Apparently important to the immune system" [http://www.fishbase.org/glossary/Glossary.php?q=epigonal+organ] +synonym: "subgonal organ" EXACT [] +is_a: UBERON:0004177 ! hemopoietic organ +is_a: UBERON:0005057 ! immune organ +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0000468 ! multicellular organism +relationship: surrounds UBERON:0000991 ! gonad + +[Term] +id: UBERON:0010015 +name: ventral patch of Leydig's organ +def: "The ventralmost of the two bodies of the elasmopbranch hemopoietic organ betweean the esophageal mucosa and muscularis" [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0000040 ! Leydig's organ + +[Term] +id: UBERON:0010016 +name: spiral valve of intestine +def: "Coiled structure in the lumen of the small intestine that increases the length of the route through the digestive tract.[WP,cjm,Kardong]" [http://en.wikipedia.org/wiki/Spiral_valve] +synonym: "intestinal spiral valve" EXACT [] +synonym: "spiral valve" BROAD [] +xref: Spiral:valve +is_a: UBERON:0003978 {source="cjm"} ! valve +is_a: UBERON:0035118 ! material entity in digestive tract +disjoint_from: UBERON:0010017 ! spiral valve of cystic duct +disjoint_from: UBERON:0010018 ! spiral valve of conus arteriosus +relationship: part_of UBERON:0002108 ! small intestine + +[Term] +id: UBERON:0010017 +name: spiral valve of cystic duct +def: "A series of crescentic folds of mucous membrane somewhat spirally arranged on the interior of the gallbladder and continuing into the cystic duct" [http://dictionary.reference.com/browse/spiral+valve, http://en.wikipedia.org/wiki/Spiral_valves_of_Heister] +synonym: "Heister's valve" EXACT [FMA:15855] +synonym: "plica spiralis" EXACT LATIN [FMA:TA] +synonym: "plica spiralis (ductus cysticus)" EXACT [FMA:15855] +synonym: "spiral fold of cystic duct" EXACT [FMA:15855] +synonym: "valve of Heister" EXACT [] +xref: FMA:15855 +xref: http://en.wikipedia.org/wiki/Spiral_valves_of_Heister +xref: http://www.snomedbrowser.com/Codes/Details/270125000 +is_a: UBERON:0003978 {source="FMA"} ! valve +is_a: UBERON:0004119 ! endoderm-derived structure +disjoint_from: UBERON:0010018 ! spiral valve of conus arteriosus +relationship: part_of UBERON:0001152 ! cystic duct + +[Term] +id: UBERON:0010018 +name: spiral valve of conus arteriosus +def: "The spiral valve alternately blocks & unblocks the entrances to the left and right pulmonary arches (sending unoxygenated blood to the skin & lungs)." [http://people.eku.edu/ritchisong/342notes9.html] +xref: AAO:0010251 +xref: http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter21/medialib/Kardong_fig_12_29.html +is_a: UBERON:0003978 {source="cjm"} ! valve +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0003983 {source="AAO"} ! conus arteriosus + +[Term] +id: UBERON:0010019 +name: spiracle (sensu Vertebrata) +def: "A small hole behind each eye that opens to the mouth in some fish. In the primitive jawless fish the first gill opening immediately behind the mouth is essentially similar to the other gill openings." [http://en.wikipedia.org/wiki/Spiracle#Vertebrates, ISBN:0073040584] +synonym: "spiracle" BROAD SENSU [NCBITaxon:7742] +synonym: "vertebrate spiracle" EXACT [] +xref: Vertebrates +is_a: UBERON:0003102 {source="cjm"} ! surface structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0004362 ! pharyngeal arch 1 +relationship: part_of UBERON:0001004 ! respiratory system +relationship: present_in_taxon NCBITaxon:119203 + +[Term] +id: UBERON:0010020 +name: tubotympanic recess epithelium +def: "The dorsal portion of the embryonic first endodermal pharyngeal pouch; it develops into the middle ear cavity." [ISBN:0124020607, VHOG:0001297] +synonym: "tubotympanic recess" RELATED [VHOG:0001297] +xref: EHDAA2:0004115 +xref: EHDAA:6772 +xref: EMAPA:17002 +xref: FMA:312393 +xref: http://linkedlifedata.com/resource/umls/id/C1284046 +xref: http://www.snomedbrowser.com/Codes/Details/361516008 +xref: MA:0001218 +xref: NCIT:C34318 +xref: UMLS:C1284046 {source="ncithesaurus:Tubotympanic_Recess"} +xref: VHOG:0001297 +is_a: UBERON:0005423 ! developing anatomical structure +is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac +is_a: UBERON:0015813 ! middle ear epithelium +relationship: develops_from UBERON:0007122 {source="http://www.ncbi.nlm.nih.gov/pubmed/11237469", source="EHDAA2", source="ISBN:0073040584"} ! pharyngeal pouch 1 + +[Term] +id: UBERON:0010021 +name: dorsal part of pharyngeal pouch 1 +synonym: "dorsal 1st branchial pouch" EXACT [] +synonym: "dorsal branchial pouch 1 endoderm" RELATED [] +synonym: "dorsal elongation of first pouch endoderm" RELATED [] +synonym: "dorsal pharyngeal pouch 1" EXACT [] +synonym: "dorsal pharyngeal pouch 1 endoderm" RELATED [] +is_a: UBERON:0003258 ! endoderm of foregut +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0007122 ! pharyngeal pouch 1 + +[Term] +id: UBERON:0010022 +name: ventral part of pharyngeal pouch 1 +synonym: "ventral 1st branchial pouch" EXACT [] +synonym: "ventral branchial pouch 1 endoderm" RELATED [] +synonym: "ventral elongation of first pouch endoderm" RELATED [] +synonym: "ventral pharyngeal pouch 1" EXACT [] +synonym: "ventral pharyngeal pouch 1 endoderm" RELATED [] +is_a: UBERON:0003258 ! endoderm of foregut +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0007122 ! pharyngeal pouch 1 + +[Term] +id: UBERON:0010023 +name: dorsal part of pharyngeal pouch 2 +synonym: "dorsal 2nd branchial pouch" EXACT [] +synonym: "dorsal branchial pouch 2 endoderm" RELATED [] +synonym: "dorsal elongation of second pouch endoderm" RELATED [] +synonym: "dorsal pharyngeal pouch 2" EXACT [] +synonym: "dorsal pharyngeal pouch 2 endoderm" RELATED [] +is_a: UBERON:0003258 ! endoderm of foregut +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0007123 ! pharyngeal pouch 2 + +[Term] +id: UBERON:0010024 +name: ventral part of pharyngeal pouch 2 +synonym: "ventral 2nd branchial pouch" EXACT [] +synonym: "ventral branchial pouch 2 endoderm" RELATED [] +synonym: "ventral elongation of second pouch endoderm" RELATED [] +synonym: "ventral pharyngeal pouch 2" EXACT [] +synonym: "ventral pharyngeal pouch 2 endoderm" RELATED [] +is_a: UBERON:0003258 ! endoderm of foregut +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0007123 ! pharyngeal pouch 2 + +[Term] +id: UBERON:0010025 +name: dorsal part of pharyngeal pouch 3 +synonym: "cranial dorsal aspect of third dorsal pharyngeal pouch" RELATED [] +synonym: "dorsal 3rd arch pharyngeal pouch endoderm" EXACT [EHDAA2:0000409] +synonym: "dorsal 3rd branchial pouch" EXACT [] +synonym: "dorsal branchial pouch 3 endoderm" RELATED [] +synonym: "dorsal pharyngeal pouch 3" EXACT [] +synonym: "dorsal pharyngeal pouch 3 endoderm" RELATED [] +synonym: "dorsal wing of pharyngeal pouch 3" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: EHDAA2:0000409 +xref: EMAPA:16758 +is_a: UBERON:0003258 ! endoderm of foregut +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0007124 {source="EHDAA2"} ! pharyngeal pouch 3 + +[Term] +id: UBERON:0010026 +name: ventral part of pharyngeal pouch 3 +synonym: "caudal ventral aspect of third dorsal pharyngeal pouch" RELATED [] +synonym: "ventral 3rd arch pharyngeal pouch endoderm" EXACT [EHDAA2:0002173] +synonym: "ventral 3rd branchial pouch" EXACT [] +synonym: "ventral branchial pouch 3 endoderm" RELATED [] +synonym: "ventral pharyngeal pouch 3" EXACT [] +synonym: "ventral pharyngeal pouch 3 endoderm" RELATED [] +synonym: "ventral wing of pharyngeal pouch 3" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: EHDAA2:0002173 +xref: EMAPA:16759 +is_a: UBERON:0003258 ! endoderm of foregut +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0007124 {source="EHDAA2"} ! pharyngeal pouch 3 + +[Term] +id: UBERON:0010027 +name: dorsal part of pharyngeal pouch 4 +synonym: "dorsal 4th branchial pouch" EXACT [] +synonym: "dorsal branchial pouch 4 endoderm" RELATED [] +synonym: "dorsal pharyngeal pouch 4" EXACT [] +synonym: "dorsal pharyngeal pouch 4 endoderm" RELATED [] +is_a: UBERON:0003258 ! endoderm of foregut +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0007125 ! pharyngeal pouch 4 + +[Term] +id: UBERON:0010028 +name: ventral part of pharyngeal pouch 4 +synonym: "ventral 4th branchial pouch" EXACT [] +synonym: "ventral branchial pouch 4 endoderm" RELATED [] +synonym: "ventral pharyngeal pouch 4" EXACT [] +synonym: "ventral pharyngeal pouch 4 endoderm" RELATED [] +is_a: UBERON:0003258 ! endoderm of foregut +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0007125 ! pharyngeal pouch 4 + +[Term] +id: UBERON:0010029 +name: dorsal part of pharyngeal pouch 5 +synonym: "dorsal 5th branchial pouch" EXACT [] +synonym: "dorsal branchial pouch 5 endoderm" RELATED [] +synonym: "dorsal pharyngeal pouch 5" EXACT [] +synonym: "dorsal pharyngeal pouch 5 endoderm" RELATED [] +is_a: UBERON:0003258 ! endoderm of foregut +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0007126 ! pharyngeal pouch 5 + +[Term] +id: UBERON:0010030 +name: ventral part of pharyngeal pouch 5 +synonym: "ventral 5th branchial pouch" EXACT [] +synonym: "ventral branchial pouch 5 endoderm" RELATED [] +synonym: "ventral pharyngeal pouch 5" EXACT [] +synonym: "ventral pharyngeal pouch 5 endoderm" RELATED [] +is_a: UBERON:0003258 ! endoderm of foregut +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0007126 ! pharyngeal pouch 5 + +[Term] +id: UBERON:0010031 +name: 6th arch mesenchyme +def: "Mesenchyme that is part of a pharyngeal arch 6." [OBOL:automatic] +synonym: "6th branchial arch mesenchyme" RELATED [] +synonym: "6th pharyngeal arch mesenchyme" EXACT [] +synonym: "pharyngeal arch 6 mesenchyme" RELATED [] +xref: EHDAA2:0004076 +xref: EMAPA:32765 +xref: FMA:318209 +is_a: UBERON:0009494 ! pharyngeal arch mesenchymal region +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0003117 ! pharyngeal arch 6 +relationship: part_of UBERON:0003117 ! pharyngeal arch 6 + +[Term] +id: UBERON:0010032 +name: anterior part of tongue +def: "The portion of the tongue in front of the terminal sulcus. At the apex, thin and narrow, it is directed forward against the lingual surfaces of the lower incisor teeth. It is derived primarily from the first pharyngeal arch." [http://en.wikipedia.org/wiki/Anterior_tongue] +synonym: "anterior 2/3 of the tongue" RELATED [http://en.wikipedia.org/wiki/Anterior_tongue] +synonym: "anterior 2/3 of tongue" RELATED [http://en.wikipedia.org/wiki/Anterior_tongue] +synonym: "anterior two thirds of the tongue" RELATED [http://en.wikipedia.org/wiki/Anterior_tongue] +synonym: "apex linguae" RELATED [http://en.wikipedia.org/wiki/Anterior_tongue] +synonym: "apex of the tongue" RELATED [http://en.wikipedia.org/wiki/Anterior_tongue] +synonym: "buccal part of the tongue" RELATED [http://en.wikipedia.org/wiki/Anterior_tongue] +synonym: "front of the tongue" RELATED [http://en.wikipedia.org/wiki/Anterior_tongue] +synonym: "oral part of the tongue" RELATED [http://en.wikipedia.org/wiki/Anterior_tongue] +synonym: "pars anterior dorsi linguae" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_tongue] +xref: Anterior:tongue +xref: EMAPA:37437 {source="MA:th"} +xref: FMA:229084 +xref: http://linkedlifedata.com/resource/umls/id/C0226946 +xref: NCIT:C32130 +xref: UMLS:C0226946 {source="ncithesaurus:Apex_of_the_Tongue"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000064 {source="ISBN:1607950324"} ! organ part +intersection_of: develops_from UBERON:0006260 {source="ISBN:1607950324"} ! lingual swellings +intersection_of: part_of UBERON:0001723 {source="ISBN:1607950324"} ! tongue +disjoint_from: UBERON:0010033 {source="lexical"} ! posterior part of tongue +relationship: develops_from UBERON:0006260 ! lingual swellings +relationship: part_of UBERON:0001723 ! tongue + +[Term] +id: UBERON:0010033 +name: posterior part of tongue +def: "The Posterior tongue, or pharyngeal part, is the part of the tongue behind the terminal sulcus. At its root, it is directed backward, and connected with the hyoid bone by the Hyoglossi and Genioglossi muscles and the hyoglossal membrane; with the epiglottis by three folds (glossoepiglottic) of mucous membrane; with the soft palate by the glossopalatine arches; and with the pharynx by the Constrictores pharyngis superiores and the mucous membrane. It is derived primarily from the third pharyngeal arch. (The second arch has a substantial contribution during fetal development, but this later atrophies. The fourth arch may also contribute, depending upon how the boundaries of the tongue are defined.)" [http://en.wikipedia.org/wiki/Posterior_tongue] +synonym: "base of the tongue" RELATED [http://en.wikipedia.org/wiki/Posterior_tongue] +synonym: "base of tongue" EXACT [http://en.wikipedia.org/wiki/Posterior_tongue] +synonym: "pars posterior (dorsum linguae)" EXACT [FMA:54645] +synonym: "pars posterior dorsi linguae" EXACT LATIN [http://en.wikipedia.org/wiki/Posterior_tongue] +synonym: "pars posterior linguae" EXACT LATIN [FMA:TA] +synonym: "pars postsulcalis (dorsum linguae)" EXACT [FMA:54645] +synonym: "pharyngeal part of the tongue" RELATED [http://en.wikipedia.org/wiki/Posterior_tongue] +synonym: "pharyngeal part of tongue" EXACT [FMA:54645] +synonym: "pharyngeal portion of dorsum of tongue" EXACT [FMA:54645] +synonym: "posterior 1/3 of the tongue" RELATED [http://en.wikipedia.org/wiki/Posterior_tongue] +synonym: "posterior part of dorsum of tongue" EXACT [FMA:54645] +synonym: "posterior third of tongue" RELATED [http://en.wikipedia.org/wiki/Posterior_tongue] +synonym: "postsulcal part of dorsum of tongue" EXACT [FMA:54645] +synonym: "radix linguae" RELATED [http://en.wikipedia.org/wiki/Posterior_tongue] +xref: EMAPA:37438 {source="MA:th"} +xref: FMA:54645 +xref: http://linkedlifedata.com/resource/umls/id/C0226958 +xref: http://www.snomedbrowser.com/Codes/Details/362094001 +xref: MA:0003031 +xref: NCIT:C12228 +xref: Posterior:tongue +xref: UMLS:C0226958 {source="ncithesaurus:Base_of_the_Tongue"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: has_developmental_contribution_from UBERON:0003114 {source="Wikipedia"} ! pharyngeal arch 3 +relationship: part_of UBERON:0009471 {source="FMA"} ! dorsum of tongue + +[Term] +id: UBERON:0010034 +name: copula linguae +def: "A single midventral prominence deriving from the ventral bases of pharyngeal arches 2, 3 and 4 - provides the covering of the posterior of the tongue //The furcula is at first separated from the tuberculum impar by a depression, but later by a ridge, the copula, formed by the forward growth and fusion of the ventral ends of the second, third, and part of the fourth branchial arches[WP]." [http://en.wikipedia.org/wiki/Copula_linguae] +synonym: "copula" EXACT [EHDAA2:0004611] +synonym: "copula linguae" RELATED LATIN [http://en.wikipedia.org/wiki/Copula_linguae] +xref: Copula:linguae +xref: EHDAA2:0004611 +xref: http://www.snomedbrowser.com/Codes/Details/361424000 +is_a: UBERON:0005423 ! developing anatomical structure +is_a: UBERON:0010188 {source="EHDAA2"} ! protuberance +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: has_developmental_contribution_from UBERON:0002539 ! pharyngeal arch +relationship: part_of UBERON:0010056 {source="EHDAA2"} ! future tongue + +[Term] +id: UBERON:0010036 +name: anterior tegmental nucleus +def: "A group of cells located ventral to the decussation of the superior cerebellar peduncle in the mouse ( Paxinos-2001 ) and rat ( Swanson-1998 )" [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1115] +xref: BAMS:AT +xref: BAMS:ATg +xref: DMBA:17008 +xref: EMAPA:37416 {source="MA:th"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1115 +xref: MA:0001055 +xref: MBA:231 +is_a: UBERON:0006331 {source="MA"} ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus + +[Term] +id: UBERON:0010038 +name: fundic gastric gland +def: "The fundus glands (or fundic glands, or gastric glands) are found in the body and fundus of the stomach. They are simple tubes, two or more of which open into a single duct." [http://en.wikipedia.org/wiki/Fundic_glands] +synonym: "fundal gland" EXACT [] +synonym: "fundus gland" EXACT [] +synonym: "gastric fundal gland" EXACT [] +synonym: "gastric fundus gland" EXACT [] +synonym: "gastric gland of fundus of stomach" EXACT [] +synonym: "glandulae gastricae" RELATED LATIN [http://en.wikipedia.org/wiki/Fundic_glands] +xref: EMAPA:27161 +xref: Fundic:glands +xref: http://linkedlifedata.com/resource/umls/id/C0017130 +xref: http://www.snomedbrowser.com/Codes/Details/268338004 +xref: NCIT:C32643 +xref: UMLS:C0017130 {source="ncithesaurus:Fundic_Gland"} +is_a: UBERON:0000325 ! gastric gland +is_a: UBERON:0000414 ! mucous gland +intersection_of: UBERON:0000325 ! gastric gland +intersection_of: part_of UBERON:0001160 ! fundus of stomach +relationship: part_of UBERON:0004994 ! mucosa of fundus of stomach + +[Term] +id: UBERON:0010039 +name: food storage organ +def: "An organ of the digestive tract that is capable of retaining and storing food" [https://orcid.org/0000-0002-6601-2165] +subset: functional_classification +subset: grouping_class +xref: BSA:0000123 +xref: TADS:0000172 +xref: TGMA:0001041 +is_a: UBERON:0013765 ! digestive system element +relationship: part_of UBERON:0001555 ! digestive tract +relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system + +[Term] +id: UBERON:0010040 +name: stomach non-glandular epithelium +def: "Am epithelium that lines the stomach which lacks glands. In addition to a glandular epithelium, the stomachs of some vertebrates also has a second region characterized by a nonglandular epithelium, devoid of gastric glands." [ISBN:0073040584] +synonym: "stomach aglandular epithelium" EXACT [] +synonym: "stomach squamous epithelium" RELATED [ISBN:0123813611] +is_a: UBERON:0001276 ! epithelium of stomach +is_a: UBERON:0011952 ! non-glandular epithelium +intersection_of: UBERON:0011952 ! non-glandular epithelium +intersection_of: part_of UBERON:0000945 ! stomach + +[Term] +id: UBERON:0010041 +name: median ovary +is_a: UBERON:0000992 ! ovary + +[Term] +id: UBERON:0010042 +name: 1st arch mesenchyme +def: "Mesenchyme that is part of a pharyngeal arch 1." [OBOL:automatic] +synonym: "mesenchyme of 1st arch" EXACT [EMAPA:16128] +xref: EMAPA:16128 +is_a: UBERON:0009494 ! pharyngeal arch mesenchymal region +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0004362 ! pharyngeal arch 1 +relationship: part_of UBERON:0004362 ! pharyngeal arch 1 + +[Term] +id: UBERON:0010045 +name: 1st arch maxillary mesenchyme +def: "Mesenchyme that is part of a 1st arch maxillary component." [OBOL:automatic] +synonym: "maxillary component mesenchyme" RELATED [] +synonym: "maxillary mesenchyme" RELATED [] +synonym: "mesenchyme of maxillary component" EXACT [EMAPA:16391] +xref: EHDAA2:0000041 +xref: EMAPA:16391 +is_a: UBERON:0010042 ! 1st arch mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0007238 ! 1st arch maxillary component +relationship: part_of UBERON:0007238 ! 1st arch maxillary component + +[Term] +id: UBERON:0010046 +name: entire pharyngeal arch associated mesenchyme +def: "The sum total of mesenchymal tissue in the pharyngeal arch region. Pharyngeal mesenchyme is undifferentiated, loose connective tissue derived mostly from mesoderm, and also contains ectodermally derived neural crest cells." [https://orcid.org/0000-0002-6601-2165, XAO:0004524] +synonym: "associated mesenchyme of pharyngeal region" EXACT [EMAPA:16550] +synonym: "entire branchial arch associated mesenchyme" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "pharyngeal arch associated mesenchyme" EXACT [EHDAA2:0001459] +xref: EHDAA2:0001459 +xref: EMAPA:16550 +xref: XAO:0004524 +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: has_developmental_contribution_from UBERON:0003099 {source="cjm"} ! cranial neural crest +relationship: part_of UBERON:0008814 {source="EHDAA2"} ! pharyngeal arch system + +[Term] +id: UBERON:0010047 +name: oral gland +alt_id: UBERON:0003293 +def: "Gland of the epithelium lining the oral cavity. The most common are the salivary glands." [ISBN:0073040584] +synonym: "buccal gland" NARROW [] +synonym: "gland of oral opening" RELATED [] +synonym: "gland of oral region" RELATED [] +synonym: "mouth gland" RELATED [] +synonym: "oral cavity gland" RELATED [] +synonym: "oral region gland" RELATED [] +xref: EHDAA2:0001327 +xref: EHDAA:2181 +xref: EMAPA:16572 +xref: EMAPA:16723 +xref: VHOG:0000652 +is_a: UBERON:0002365 ! exocrine gland +is_a: UBERON:0003408 ! gland of digestive tract +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0000165 ! mouth +relationship: part_of UBERON:0000165 ! mouth + +[Term] +id: UBERON:0010048 +name: Duvernoy's gland +def: "A gland situated on the upper lip posterior to the eye, found in non-venomous snakes. Releases secretion via duct adjacent to posterior maxillary teeth." [http://en.wikipedia.org/wiki/Duvernoy's_gland, http://public.wsu.edu/~kkardong/Web%20of%20KVK_06b/Publications/reptile%20glands.pdf, ISBN:0073040584, UBERON:cjm] +comment: positioned posterior to the eye, encased in a thin cover of connective tissue, and consists mostly of serous cells. A single, short duct extends anteromedially from the lumen of the gland to the base of the posterior fangs.[WP] +xref: Duvernoy's:gland +is_a: UBERON:0010047 ! oral gland + +[Term] +id: UBERON:0010049 +name: supralabial gland +def: "Oral gland in reptiles situated immediately above the lip." [ISBN:0073040584] +xref: Duvernoy's:gland +is_a: UBERON:0010047 ! oral gland + +[Term] +id: UBERON:0010050 +name: infralabial gland +def: "Oral gland in reptiles situated immediately below the lip." [ISBN:0073040584] +xref: Duvernoy's:gland +is_a: UBERON:0010047 ! oral gland + +[Term] +id: UBERON:0010051 +name: dorsal patch of Leydig's organ +def: "The dosralmost of the two bodies of the elasmopbranch hemopoietic organ betweean the esophageal mucosa and muscularis" [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0000040 ! Leydig's organ + +[Term] +id: UBERON:0010052 +name: mucosa of dorsum of tongue +def: "A mucosa that is part of a dorsum of tongue." [OBOL:automatic] +synonym: "mucosa of dorsal surface of tongue" EXACT [] +xref: FMA:74871 +xref: http://www.snomedbrowser.com/Codes/Details/245835003 +is_a: UBERON:0005020 ! mucosa of tongue +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0009471 ! dorsum of tongue +relationship: part_of UBERON:0009471 ! dorsum of tongue + +[Term] +id: UBERON:0010053 +name: echolocation organ +def: "Any organ that plays a role in the process of echolocation." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0000062 ! organ + +[Term] +id: UBERON:0010054 +name: malleus cartilage element +def: "A malleus endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +xref: EMAPA:18229 +is_a: UBERON:0015018 ! malleus endochondral element +is_a: UBERON:0035131 ! auditory ossicle cartilage element +intersection_of: UBERON:0015018 ! malleus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0006262 ! malleus pre-cartilage condensation + +[Term] +id: UBERON:0010055 +name: stapes cartilage element +def: "A stapes endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +xref: EMAPA:18230 +is_a: UBERON:0011607 {source="http://people.eku.edu/ritchisong/342notes4.htm"} ! hyomandibular cartilage +is_a: UBERON:0015016 ! stapes endochondral element +is_a: UBERON:0035131 ! auditory ossicle cartilage element +intersection_of: UBERON:0015016 ! stapes endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0006294 ! stapes pre-cartilage condensation +relationship: part_of UBERON:0001686 ! auditory ossicle bone + +[Term] +id: UBERON:0010056 +name: future tongue +def: "A compound organ that has the potential to develop into a tongue." [OBOL:automatic] +xref: EHDAA2:0000696 +xref: EHDAA:2951 +is_a: UBERON:0003103 {source="EHDAA2"} ! compound organ +is_a: UBERON:0005423 ! developing anatomical structure +is_a: UBERON:0013765 ! digestive system element +intersection_of: UBERON:0003103 ! compound organ +intersection_of: has_potential_to_develop_into UBERON:0001723 ! tongue +relationship: has_potential_to_develop_into UBERON:0001723 ! tongue +relationship: part_of UBERON:0000165 ! mouth + +[Term] +id: UBERON:0010057 +name: hypopharyngeal eminence +synonym: "hypobranchial eminence" EXACT [EMAPA:17352, OBOL:automatic] +xref: EHDAA2:0000799 +xref: EMAPA:17352 +xref: http://www.snomedbrowser.com/Codes/Details/361420009 +is_a: UBERON:0005423 ! developing anatomical structure +is_a: UBERON:0010188 {source="EHDAA2"} ! protuberance +relationship: part_of UBERON:0010056 {source="EHDAA2"} ! future tongue + +[Term] +id: UBERON:0010059 +name: hypoglossal cord +xref: EHDAA2:0004610 +is_a: UBERON:0002036 {source="EHDAA2"} ! striated muscle tissue +relationship: part_of UBERON:0010056 {source="EHDAA2"} ! future tongue + +[Term] +id: UBERON:0010060 +name: pharyngeal opening of pharyngotympanic tube +def: "On the lateral wall of the nasal part of the pharynx is the pharyngeal opening of auditory tube (pharyngeal ostium), somewhat triangular in shape, and bounded behind by a firm prominence, the torus or cushion, caused by the medial end of the cartilage of the tube which elevates the mucous membrane." [http://en.wikipedia.org/wiki/Pharyngeal_opening_of_auditory_tube] +synonym: "ostium pharyngeum tubae auditivae" EXACT LATIN [FMA:TA] +synonym: "ostium pharyngeum tubae auditivae" RELATED LATIN [http://en.wikipedia.org/wiki/Pharyngeal_opening_of_auditory_tube] +synonym: "ostium pharyngeum tubae auditoriae" EXACT LATIN [FMA:TA] +synonym: "pharyngeal opening of auditory tube" EXACT [FMA:54979] +synonym: "pharyngeal opening of eustachian tube" EXACT [FMA:54979] +synonym: "pharyngeal orifice of auditory tube" EXACT [FMA:54979] +synonym: "pharyngeal orifice of eustachian tube" EXACT [FMA:54979] +synonym: "pharyngeal orifice of pharyngotympanic tube" EXACT [FMA:54979] +synonym: "pharyngeal ostium" RELATED [http://en.wikipedia.org/wiki/Pharyngeal_opening_of_auditory_tube] +synonym: "pharyngeal ostium of auditory tube" EXACT [FMA:54979] +synonym: "pharyngeal ostium of eustachian tube" EXACT [FMA:54979] +synonym: "pharyngeal ostium of pharyngotympanic tube" EXACT [FMA:54979] +synonym: "pharyngeal tubal ostium" EXACT [FMA:54979] +xref: FMA:54979 +xref: http://en.wikipedia.org/wiki/Pharyngeal_opening_of_auditory_tube +xref: http://www.snomedbrowser.com/Codes/Details/368945008 +is_a: UBERON:0000464 ! anatomical space +relationship: continuous_with UBERON:0010061 ! lumen of nasopharynx +relationship: part_of UBERON:0001042 ! chordate pharynx + +[Term] +id: UBERON:0010061 +name: lumen of nasopharynx +synonym: "nasopharyngeal luman" EXACT [] +synonym: "nasopharynx cavity" EXACT [] +synonym: "nasopharynx lumen" EXACT [FMA:55094] +xref: FMA:55094 +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0001728 ! nasopharynx +relationship: part_of UBERON:0001731 ! cavity of pharynx + +[Term] +id: UBERON:0010062 +name: pharyngotympanic tube epithelium +synonym: "auditory tube epithelium" EXACT [EHDAA2:0004117] +synonym: "eustachian tube epithelium" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: EHDAA2:0004117 +xref: EMAPA:32801 +xref: FMA:285217 +xref: MA:0003142 +is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube +is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015813 ! middle ear epithelium +relationship: develops_from UBERON:0010020 ! tubotympanic recess epithelium +relationship: develops_from_part_of UBERON:0010020 {source="EHDAA2"} ! tubotympanic recess epithelium +relationship: part_of UBERON:0002393 {source="cjm"} ! pharyngotympanic tube + +[Term] +id: UBERON:0010063 +name: tympanic cavity epithelium +xref: EHDAA2:0004116 +is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015813 ! middle ear epithelium +relationship: develops_from UBERON:0010020 ! tubotympanic recess epithelium +relationship: develops_from_part_of UBERON:0010020 {source="EHDAA2"} ! tubotympanic recess epithelium +relationship: located_in UBERON:0004114 ! tympanic cavity + +[Term] +id: UBERON:0010064 +name: open anatomical space +def: "An anatomical space with at least one opening to another space or the exterior." [AEO:0000221] +xref: AEO:0000221 +xref: EHDAA2:0004616 +is_a: UBERON:0000464 ! anatomical space +relationship: connected_to UBERON:0000464 {source="cjm"} ! anatomical space + +[Term] +id: UBERON:0010065 +name: auditory meatus epithelium +xref: EHDAA2:0004114 +is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube +is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0010371 ! ecto-epithelium +is_a: UBERON:0015814 ! outer ear epithelium +relationship: develops_from UBERON:0005872 {source="http://www.ncbi.nlm.nih.gov/pubmed/16313389", source="EHDAA2"} ! 1st arch pharyngeal cleft + +[Term] +id: UBERON:0010066 +name: tympanic plate +def: "The tympanic part of the temporal bone is a curved plate of bone lying below the squama and in front of the mastoid process." [http://en.wikipedia.org/wiki/Tympanic_part_of_the_temporal_bone] +synonym: "ectotympanic" RELATED [http://en.wikipedia.org/wiki/Ectotympanic] +synonym: "ectotympanic bone" RELATED [http://en.wikipedia.org/wiki/Ectotympanic] +synonym: "pars tympanica" RELATED [http://en.wikipedia.org/wiki/Tympanic_part_of_the_temporal_bone] +synonym: "pars tympanica (os temporale)" EXACT [FMA:52880] +synonym: "pars tympanica ossis temporalis" RELATED LATIN [http://en.wikipedia.org/wiki/Tympanic_part_of_the_temporal_bone] +synonym: "tympanic bone" RELATED [http://en.wikipedia.org/wiki/Tympanic_part_of_the_temporal_bone] +synonym: "tympanic part" RELATED [http://en.wikipedia.org/wiki/Tympanic_part_of_the_temporal_bone] +synonym: "tympanic part of temporal bone" EXACT [FMA:52880] +xref: FMA:52880 +xref: http://en.wikipedia.org/wiki/Tympanic_part_of_the_temporal_bone +xref: http://www.snomedbrowser.com/Codes/Details/138773005 +is_a: UBERON:0005913 {source="cjm"} ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0002218 ! tympanic ring +relationship: part_of UBERON:0001678 ! temporal bone + +[Term] +id: UBERON:0010069 +name: outer epithelial layer of tympanic membrane +def: "A portion of the external acoustic meatus epithelium which makes up the outer (cuticular) layer of the tympanic membrane" [http://www.ncbi.nlm.nih.gov/pubmed/11237469, https://orcid.org/0000-0002-6601-2165] +synonym: "cuticular layer of tympanic membrane" EXACT [FMA:56819] +synonym: "cuticular stratum of tympanic membrane" EXACT [FMA:56819] +synonym: "outer cuticular layer of tympanic membrane" EXACT [FMA:56819] +synonym: "outer layer of tympanic membrane" EXACT [] +synonym: "tympanic membrane external acoustic meatus epithelial component" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: FMA:56819 +xref: http://www.snomedbrowser.com/Codes/Details/39725007 +is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0009647 ! tympanic membrane epithelium +is_a: UBERON:0010371 ! ecto-epithelium +is_a: UBERON:0015814 ! outer ear epithelium +intersection_of: UBERON:0009647 ! tympanic membrane epithelium +intersection_of: part_of UBERON:0001352 ! external acoustic meatus +relationship: part_of UBERON:0001352 ! external acoustic meatus + +[Term] +id: UBERON:0010070 +name: intermediate layer of tympanic membrane +def: "The intermediate fibrous layer of the tympanic membrane." [http://www.ncbi.nlm.nih.gov/pubmed/11237469, https://sourceforge.net/tracker/?func=detail&aid=3468783&group_id=76834&atid=1205376] +synonym: "connective tissue layer of tympanic membrane" EXACT [FMA:56830] +synonym: "fibrous layer of tympanic membrane" EXACT [FMA:56830] +synonym: "fibrous stratum of tympanic membrane" EXACT [FMA:56830] +synonym: "intermediate fibrous layer of tympanic membrane" EXACT [FMA:56830] +synonym: "tympanic endothelium" EXACT [MA:0001223] +xref: EMAPA:19063 +xref: FMA:56830 +xref: http://www.snomedbrowser.com/Codes/Details/44692008 +xref: MA:0001223 +is_a: UBERON:0010071 {source="FMA"} ! layer of tympanic membrane + +[Term] +id: UBERON:0010071 +name: layer of tympanic membrane +subset: grouping_class +synonym: "tympanic membrane layer" EXACT [FMA:56732] +xref: FMA:56732 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002364 ! tympanic membrane + +[Term] +id: UBERON:0010074 +name: chromaffin system +def: "Organ system subdivision that consists primarily of chromaffin cells and their supporting structures." [http://orcid.org/0000-0002-6601-2165] +synonym: "argentaffin system" RELATED [MESH:A06.224] +synonym: "chromaffin tissue" RELATED [] +xref: FMA:79645 +xref: MESH:D002838 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0011216 ! organ system subdivision +relationship: part_of UBERON:0000949 {source="cjm"} ! endocrine system + +[Term] +id: UBERON:0010075 +name: sacral neural crest +def: "One of the 5 distinct and partially overlapping functional domains of the premigratory neural crest. The vagal and sacral neural crest cells develop into the ganglia of the enteric nervous system, also known as the parasympathetic ganglia." [http://www.ncbi.nlm.nih.gov/books/NBK10065/, XB:curator] +xref: XAO:0004192 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0002342 ! neural crest + +[Term] +id: UBERON:0010076 +name: network of trabecular spaces in bone tissue +def: "Tissue cavity consisting of intercommunicating trabecular spaces in the cancellous bone." [FMA:259332] +synonym: "trabecular network of bone tissue" EXACT [FMA:259332] +synonym: "trabecular space network" RELATED [FMA:259332] +xref: FMA:259332 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0008867 ! trabecular network of bone +relationship: luminal_space_of UBERON:0008867 ! trabecular network of bone +relationship: part_of UBERON:0008867 ! trabecular network of bone + +[Term] +id: UBERON:0010077 +name: cuboidal epithelium +def: "An epithelium consisting of cuboidal epithelial cells." [http://en.wikipedia.org/wiki/Cuboidal_epithelium] +xref: Cuboidal:epithelium +xref: http://linkedlifedata.com/resource/umls/id/C0682577 +xref: NCIT:C32415 +xref: UMLS:C0682577 {source="ncithesaurus:Cuboidal_Epithelium"} +is_a: UBERON:0000483 ! epithelium + +[Term] +id: UBERON:0010078 +name: optic choroid vascular plexus +alt_id: ZFA:0005228 +synonym: "capillary lamina of choroid" RELATED [XAO:0004176] +synonym: "choriocapillaris" RELATED [XAO:0004176] +synonym: "choroid vascular plexus" RELATED [] +synonym: "choroid vasculature" RELATED [ZFA:0005094] +synonym: "choroidal vascular plexus" RELATED [TAO:0005094] +synonym: "CVP" EXACT ABBREVIATION [ZFA:0005094] +synonym: "optic choroid vascular plexus" RELATED [XAO:0004176] +xref: TAO:0005094 +xref: XAO:0004176 +xref: ZFA:0005094 +is_a: UBERON:0002203 {source="ZFA"} ! vasculature of eye +is_a: UBERON:0005629 {source="XAO"} ! vascular plexus +relationship: part_of UBERON:0001776 {source="ZFA"} ! optic choroid + +[Term] +id: UBERON:0010081 +name: future common hepatic duct +def: "An extrahepatic bile duct that has the potential to develop into a common hepatic duct." [OBOL:automatic] +xref: EHDAA2:0000595 +is_a: UBERON:0003703 ! extrahepatic bile duct +is_a: UBERON:0003914 ! epithelial tube +is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0034932 ! epithelium of biliary system +intersection_of: UBERON:0003703 ! extrahepatic bile duct +intersection_of: has_potential_to_develop_into UBERON:0001175 ! common hepatic duct +relationship: develops_from UBERON:0005604 ! extrahepatic part of hepatic duct +relationship: has_potential_to_develop_into UBERON:0001175 ! common hepatic duct + +[Term] +id: UBERON:0010083 +name: future dermis +def: "Mesenchyme that has the potential to develop into a dermis." [OBOL:automatic] +xref: EHDAA2:0000598 +is_a: UBERON:0003104 ! mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: has_potential_to_develop_into UBERON:0002067 ! dermis +relationship: develops_from UBERON:0003089 {source="EHDAA2"} ! sclerotome +relationship: develops_from UBERON:0004016 {source="XAO"} ! dermatome +relationship: has_potential_to_develop_into UBERON:0002067 ! dermis +relationship: part_of UBERON:0002199 {source="EHDAA2"} ! integument + +[Term] +id: UBERON:0010084 +name: future diaphragm +def: "A structure that will develop into a diaphragm." [http://orcid.org/0000-0002-6601-2165] +xref: EHDAA2:0000599 +is_a: UBERON:0006598 ! presumptive structure +intersection_of: UBERON:0006598 ! presumptive structure +intersection_of: has_potential_to_develop_into UBERON:0001103 ! diaphragm +relationship: developmentally_induced_by UBERON:0009133 {source="http://www.ncbi.nlm.nih.gov/pubmed/23586979"} ! pleuroperitoneal membrane +relationship: develops_from UBERON:0005594 {source="http://www.ncbi.nlm.nih.gov/pubmed/23586979"} ! head somite +relationship: has_potential_to_develop_into UBERON:0001103 ! diaphragm +relationship: located_in UBERON:0002323 {source="EHDAA2"} ! coelemic cavity lumen + +[Term] +id: UBERON:0010090 +name: future falx cerebri +def: "A developing anatomical structure that has the potential to develop into a falx cerebri." [OBOL:automatic] +xref: EHDAA2:0000608 +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0006598 ! presumptive structure +is_a: UBERON:0007524 ! dense mesenchyme tissue +intersection_of: UBERON:0006598 ! presumptive structure +intersection_of: has_potential_to_develop_into UBERON:0006059 ! falx cerebri +relationship: has_potential_to_develop_into UBERON:0006059 ! falx cerebri + +[Term] +id: UBERON:0010091 +name: future hindbrain meninx +def: "A multi-tissue structure that has the potential to develop into a meninx of hindbrain." [OBOL:automatic] +synonym: "future hindbrain meninges" EXACT [EHDAA2:0000610] +xref: EHDAA2:0000610 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0007524 ! dense mesenchyme tissue +is_a: UBERON:0007645 ! future meninx +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0006598 ! presumptive structure +intersection_of: has_potential_to_develop_into UBERON:0003291 ! meninx of hindbrain +relationship: has_potential_to_develop_into UBERON:0003291 ! meninx of hindbrain +relationship: part_of UBERON:0002028 ! hindbrain + +[Term] +id: UBERON:0010092 +name: future metencephalon +def: "A developing anatomical structure that has the potential to develop into a metencephalon." [OBOL:automatic] +xref: EHDAA2:0000623 +is_a: UBERON:0006598 ! presumptive structure +intersection_of: UBERON:0006598 ! presumptive structure +intersection_of: has_potential_to_develop_into UBERON:0001895 ! metencephalon +relationship: has_potential_to_develop_into UBERON:0001895 ! metencephalon +relationship: part_of UBERON:0002028 ! hindbrain + +[Term] +id: UBERON:0010096 +name: future myelencephalon +def: "A developing anatomical structure that has the potential to develop into a myelencephalon." [OBOL:automatic] +xref: EHDAA2:0000640 +is_a: UBERON:0006598 ! presumptive structure +intersection_of: UBERON:0006598 ! presumptive structure +intersection_of: has_potential_to_develop_into UBERON:0005290 ! myelencephalon +relationship: has_potential_to_develop_into UBERON:0005290 ! myelencephalon +relationship: part_of UBERON:0002028 ! hindbrain + +[Term] +id: UBERON:0010123 +name: future facial nucleus +def: "A gray matter that has the potential to develop into a facial nucleus." [OBOL:automatic] +xref: EHDAA2:0004639 +is_a: UBERON:0002020 ! gray matter +intersection_of: UBERON:0002020 ! gray matter +intersection_of: has_potential_to_develop_into UBERON:0000127 ! facial nucleus +relationship: has_potential_to_develop_into UBERON:0000127 ! facial nucleus + +[Term] +id: UBERON:0010124 +name: future inferior salivatory nucleus +def: "A gray matter that has the potential to develop into a inferior salivatory nucleus." [OBOL:automatic] +xref: EHDAA2:0004643 +is_a: UBERON:0002020 ! gray matter +intersection_of: UBERON:0002020 ! gray matter +intersection_of: has_potential_to_develop_into UBERON:0002872 ! inferior salivatory nucleus +relationship: has_potential_to_develop_into UBERON:0002872 ! inferior salivatory nucleus + +[Term] +id: UBERON:0010125 +name: future superior salivatory nucleus +def: "A gray matter that has the potential to develop into a superior salivatory nucleus." [OBOL:automatic] +xref: EHDAA2:0004644 +is_a: UBERON:0002020 ! gray matter +intersection_of: UBERON:0002020 ! gray matter +intersection_of: has_potential_to_develop_into UBERON:0002149 ! superior salivatory nucleus +relationship: has_potential_to_develop_into UBERON:0002149 ! superior salivatory nucleus + +[Term] +id: UBERON:0010126 +name: future nucleus ambiguus +def: "A gray matter that has the potential to develop into a nucleus ambiguus." [OBOL:automatic] +xref: EHDAA2:0004647 +is_a: UBERON:0002020 ! gray matter +intersection_of: UBERON:0002020 ! gray matter +intersection_of: has_potential_to_develop_into UBERON:0001719 ! nucleus ambiguus +relationship: has_potential_to_develop_into UBERON:0001719 ! nucleus ambiguus + +[Term] +id: UBERON:0010127 +name: future dorsal motor nucleus of vagus +def: "A gray matter that has the potential to develop into a dorsal motor nucleus of vagus nerve." [OBOL:automatic] +xref: EHDAA2:0004650 +is_a: UBERON:0006598 ! presumptive structure +intersection_of: UBERON:0006598 ! presumptive structure +intersection_of: has_potential_to_develop_into UBERON:0002870 ! dorsal motor nucleus of vagus nerve +relationship: has_potential_to_develop_into UBERON:0002870 ! dorsal motor nucleus of vagus nerve + +[Term] +id: UBERON:0010128 +name: future pterygopalatine ganglion +def: "A ganglion that has the potential to develop into a pterygopalatine ganglion." [OBOL:automatic] +synonym: "future Meckel ganglion" EXACT [MP:0008314, OBOL:automatic] +synonym: "future Meckel's ganglion" EXACT [FMA:6965, OBOL:automatic] +synonym: "future nasal ganglion" EXACT [MP:0008314, OBOL:automatic] +synonym: "future palatine ganglion" EXACT [MP:0008314, OBOL:automatic] +synonym: "future pterygopalatine ganglia" EXACT [MP:0008314, OBOL:automatic] +synonym: "future sphenopalatine ganglion" EXACT [MP:0008314, OBOL:automatic] +synonym: "future sphenopalatine parasympathetic ganglion" EXACT [EHDAA2:0000673] +synonym: "future sphenopalatine parasympathetic ganglion" EXACT [EHDAA2:0001889, OBOL:automatic] +xref: EHDAA2:0000673 +is_a: UBERON:0001808 ! parasympathetic ganglion +intersection_of: UBERON:0000045 ! ganglion +intersection_of: has_potential_to_develop_into UBERON:0003962 ! pterygopalatine ganglion +relationship: has_potential_to_develop_into UBERON:0003962 ! pterygopalatine ganglion + +[Term] +id: UBERON:0010129 +name: femur cartilage element +def: "A femur endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +synonym: "femoral cartilage condensation" EXACT [EMAPA:17742] +xref: EMAPA:17742 +is_a: UBERON:0005254 ! upper leg mesenchyme +is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015052 ! femur endochondral element +intersection_of: UBERON:0015052 ! femur endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0006234 ! femur pre-cartilage condensation +relationship: has_potential_to_develop_into UBERON:0000981 ! femur + +[Term] +id: UBERON:0010130 +name: embryonic autopod plate +def: "The distal elements of the developing limb of vertebrates that will give rise to the autopod (e.g. manus, pes, paw)" [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/1151, MP:0004576, UBERON:cjm] +synonym: "autopod plate" EXACT [] +synonym: "limb plate" EXACT [] +is_a: UBERON:0006598 ! presumptive structure +intersection_of: UBERON:0002050 ! embryonic structure +intersection_of: has_potential_to_develop_into UBERON:0002470 ! autopod region +relationship: develops_from UBERON:0004347 ! limb bud +relationship: has_potential_to_develop_into UBERON:0002470 ! autopod region + +[Term] +id: UBERON:0010131 +name: conducting tissue of heart +def: "Any portion of cardiac muscle tissue that is part of the conducting system of heart or the Purkinje fibers." [http://orcid.org/0000-0002-6601-2165] +synonym: "specialized conducting tissue of heart" EXACT [FMA:83378] +synonym: "specialized muscle tissue of heart" EXACT [FMA:83378] +xref: EHDAA2:0004528 +xref: FMA:83378 +is_a: UBERON:0001133 ! cardiac muscle tissue + +[Term] +id: UBERON:0010132 +name: gastroduodenal artery +def: "A small blood vessel in the abdomen that supplies blood directly to the pylorus (distal part of the stomach) and proximal part of the duodenum, and indirectly to the pancreatic head (via the anterior and posterior superior pancreaticoduodenal arteries)." [http://en.wikipedia.org/wiki/Gastroduodenal_artery] +synonym: "arteria gastroduodenalis" RELATED LATIN [http://en.wikipedia.org/wiki/Gastroduodenal_artery] +xref: EHDAA2:0000310 +xref: EHDAA:8574 +xref: FMA:14775 +xref: galen:GastroduodenalArtery +xref: Gastroduodenal:artery +xref: http://www.snomedbrowser.com/Codes/Details/244269002 +is_a: UBERON:0004573 ! systemic artery +relationship: branching_part_of UBERON:0005436 {source="FMA"} ! common hepatic artery +relationship: develops_from UBERON:0005436 {source="EHDAA2"} ! common hepatic artery +relationship: part_of UBERON:0005436 ! common hepatic artery + +[Term] +id: UBERON:0010133 +name: neuroendocrine gland +def: "any of the organized aggregations of cells that function as secretory or excretory organs and that release hormones in response to neural stimuli" [ISBN:0-683-40008-8, MP:0000631] +subset: pheno_slim +synonym: "neuroendocrine system gland" EXACT [] +xref: MA:0000720 +is_a: UBERON:0002368 ! endocrine gland +intersection_of: UBERON:0002368 ! endocrine gland +intersection_of: part_of UBERON:0001016 ! nervous system +relationship: part_of UBERON:0001016 ! nervous system + +[Term] +id: UBERON:0010134 +name: secretory circumventricular organ +def: "A circumventricular organ that is capable of secreting substances into the cerebrospinal fluid." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +xref: EMAPA:35759 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2857 +xref: MA:0002943 +is_a: UBERON:0005408 {source="MA"} ! circumventricular organ +is_a: UBERON:0010133 {source="MA"} ! neuroendocrine gland +intersection_of: UBERON:0005408 ! circumventricular organ +intersection_of: part_of UBERON:0000949 ! endocrine system + +[Term] +id: UBERON:0010135 +name: sensory circumventricular organ +def: "A circumventricular organ that is capable of monitoring the levels of substances to the cerebrospinal fluid." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "humerosensory circumventricular organ" RELATED [] +synonym: "humerosensory system" RELATED PLURAL [NeuroNames:2856] +synonym: "humerosensory system organ" RELATED [] +synonym: "sensitive circumventricular organs" RELATED PLURAL [NeuroNames:2856] +synonym: "sensitive organs" RELATED PLURAL [NeuroNames:2856] +synonym: "sensory circumventricular organs" RELATED [NeuroNames:2856] +synonym: "sensory CVOs" RELATED PLURAL [NeuroNames:2856] +xref: EMAPA:37741 {source="MA:th"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2856 +xref: MA:0002944 +is_a: UBERON:0005408 ! circumventricular organ +intersection_of: UBERON:0005408 ! circumventricular organ +intersection_of: part_of UBERON:0001032 ! sensory system +relationship: part_of UBERON:0001032 ! sensory system + +[Term] +id: UBERON:0010136 +name: epithelial sheet +def: "An epithelial sheet is a flat surface consisting of closely packed epithelial cells." [GO:0002011] +is_a: UBERON:0000483 ! epithelium + +[Term] +id: UBERON:0010137 +name: polarized epithelium +def: "A polarized epithelium is an epithelium where the epithelial sheet is oriented with respect to the planar axis." [GO:0001738] +is_a: UBERON:0000483 ! epithelium + +[Term] +id: UBERON:0010141 +name: primitive sex cord of indifferent gonad +def: "A sex cord that is part of a indifferent gonad." [OBOL:automatic] +synonym: "indifferent sex cord" EXACT [] +synonym: "primitive sex cords" EXACT [EHDAA2:0004051] +xref: EHDAA2:0004051 +is_a: UBERON:0004909 ! epithelium of gonad +is_a: UBERON:0005295 ! sex cord +intersection_of: UBERON:0005295 {source="EHDAA2"} ! sex cord +intersection_of: part_of UBERON:0009117 {source="EHDAA2"} ! indifferent gonad +relationship: develops_from UBERON:0005891 {source="EHDAA2"} ! coelomic epithelium +relationship: part_of UBERON:0009117 ! indifferent gonad + +[Term] +id: UBERON:0010143 +name: seminal vesicle fluid +def: "A bodily secretion that is produced by a seminal vesicle." [http://orcid.org/0000-0002-6601-2165] +synonym: "secretion of seminal vesicle" EXACT [FMA:62969] +synonym: "seminal fluid" RELATED INCONSISTENT [] +synonym: "seminal vesicle secretion" EXACT [FMA:62969] +synonym: "vesicular fluid" BROAD [] +xref: BTO:0002053 +xref: FMA:62969 +xref: http://linkedlifedata.com/resource/umls/id/C0036614 +xref: http://linkedlifedata.com/resource/umls/id/C0227987 +xref: MA:0002526 +xref: NCIT:C33529 +xref: NCIT:C52552 +xref: UMLS:C0036614 {source="ncithesaurus:Seminal_Fluid"} +xref: UMLS:C0227987 {source="ncithesaurus:Seminal_Vesicle_Secretion"} +is_a: UBERON:0006530 {source="FMA"} ! seminal fluid +intersection_of: UBERON:0000456 ! secretion of exocrine gland +intersection_of: produced_by UBERON:0000998 ! seminal vesicle +relationship: produced_by UBERON:0000998 ! seminal vesicle + +[Term] +id: UBERON:0010145 +name: paraurethral gland +def: "the numerous mucous-secreting glands found in several female mammalian species (including rodents and humans) on the anterior wall of the vagina, around the lower end of the urethra, and possessing a common paraurethral duct which opens (on each side) near the external urethral orifice; they are homologous with the prostate gland in males, have highly variable anatomy, and are believed to be the source of the female ejaculate, a lubricating fluid with a similar consistency to male prostatic fluid that is expelled through the urethra during sexual stimulation; like the male prostate, these glands are susceptible to infection (skenitis), cyst development, and cancer" [MGI:anna, MP:0011793] +subset: pheno_slim +synonym: "female prostate" EXACT [http://en.wikipedia.org/wiki/Skene%27s_gland, http://www.ncbi.nlm.nih.gov/pubmed/10668204, MP:0011793] +synonym: "female urethral gland" BROAD [EMAPA:29653, MP:0011793] +synonym: "female urethral gland" RELATED INCONSISTENT [] +synonym: "glandula vestibulares minor" RELATED LATIN [MP:0011793] +synonym: "glandulae vestibulares minores" RELATED LATIN [http://en.wikipedia.org/wiki/Skene%27s_gland] +synonym: "Guerin's gland" RELATED [MP:0011793] +synonym: "para-urethral gland" EXACT [FMA:20083, MP:0011793] +synonym: "periurethral gland" EXACT [http://en.wikipedia.org/wiki/Skene%27s_gland] +synonym: "Schueller's gland" RELATED [MP:0011793] +synonym: "Skene gland" EXACT [MP:0011793] +synonym: "Skene's gland" EXACT [FMA:20083, MP:0011793] +synonym: "Skene's gland of clitoral urethra" RELATED [EMAPA:36133] +synonym: "U-spot" RELATED [http://en.wikipedia.org/wiki/Skene%27s_gland, MP:0011793] +synonym: "urethral gland of clitoral urethra" EXACT [EMAPA:36134] +xref: EMAPA:36133 +xref: EMAPA:36134 +xref: FMA:20083 +xref: http://linkedlifedata.com/resource/umls/id/C0221315 +xref: http://www.snomedbrowser.com/Codes/Details/264125007 +xref: NCIT:C12339 +xref: Skene%27s:gland +xref: UMLS:C0221315 {source="ncithesaurus:Paraurethral_Gland"} +is_a: UBERON:0005398 ! female reproductive gland +relationship: part_of UBERON:0000997 {source="FMA"} ! mammalian vulva +relationship: sexually_homologous_to UBERON:0002367 {source="http://www.ncbi.nlm.nih.gov/pubmed/10668204"} ! prostate gland + +[Term] +id: UBERON:0010146 +name: paraurethral duct +alt_id: UBERON:0035064 +def: "The Skene's ducts are a pair of ducts leading from the Skene's glands to the surface of the vulva, to the left and right of the urethral opening." [http://en.wikipedia.org/wiki/Skene%27s_ducts] +synonym: "duct of paraurethral gland" EXACT [FMA:21860] +synonym: "duct of Skene's gland" EXACT [FMA:21860] +synonym: "ductus paraurethrales urethrae femininae" RELATED LATIN [http://en.wikipedia.org/wiki/Skene%27s_ducts] +synonym: "female prostate duct" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/10668204] +synonym: "paraurethral gland duct" EXACT [FMA:21860] +synonym: "periurethral duct" EXACT [] +synonym: "Skene's duct" EXACT [FMA:21445] +xref: FMA:21445 +xref: FMA:21860 +xref: http://www.snomedbrowser.com/Codes/Details/279480006 +xref: Skene%27s:ducts +is_a: UBERON:0000058 ! duct +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0000058 ! duct +intersection_of: part_of UBERON:0010145 ! paraurethral gland +relationship: part_of UBERON:0010145 ! paraurethral gland +relationship: sexually_homologous_to UBERON:0002485 {source="http://www.ncbi.nlm.nih.gov/pubmed/10668204"} ! prostate duct + +[Term] +id: UBERON:0010147 +name: male accessory sex gland +def: "Any gland, other than the gonad, associated with the genital tract, such as the ampulla of the ductus deferens and the bulbourethral, prostate and vesicular glands of the male." [BTO:0004798] +subset: pheno_slim +synonym: "male accessory gland" RELATED [BTO:0004798] +synonym: "male accessory reproductive gland" RELATED [] +xref: BTO:0004798 +is_a: UBERON:0005399 {source="BTO"} ! male reproductive gland + +[Term] +id: UBERON:0010148 +name: mating plug +def: "A gelatinous secretion used in the mating of some species. It is deposited by a male into a female genital tract and later hardens into a plug or glues the tract together." [http://en.wikipedia.org/wiki/Mating_plug] +synonym: "copulation plug" EXACT [http://en.wikipedia.org/wiki/Mating_plug] +synonym: "copulatory plug" EXACT [SPD:0000547] +synonym: "sement" RELATED [http://en.wikipedia.org/wiki/Mating_plug] +synonym: "sperm plug" EXACT [http://en.wikipedia.org/wiki/Mating_plug] +synonym: "sphragis" RELATED [http://en.wikipedia.org/wiki/Mating_plug] +synonym: "vaginal plug" EXACT [http://en.wikipedia.org/wiki/Mating_plug] +xref: Mating:plug +xref: SPD:0000547 +is_a: UBERON:0035784 ! seminal clot +relationship: present_in_taxon NCBITaxon:10088 +relationship: present_in_taxon NCBITaxon:6656 +relationship: present_in_taxon NCBITaxon:9397 +relationship: present_in_taxon NCBITaxon:9443 + +[Term] +id: UBERON:0010150 +name: duct of major vestibular gland +def: "One of a pair of ducts leading from the Bartholin's glands to the surface of the vulva" [http://en.wikipedia.org/wiki/Bartholin's_duct] +synonym: "Bartholin's duct" RELATED INCONSISTENT [http://en.wikipedia.org/wiki/Bartholin's_duct] +synonym: "duct of greater vestibular gland" EXACT [FMA:20088] +synonym: "greater vestibular gland duct" EXACT [FMA:20088] +xref: Bartholin's:duct +xref: FMA:20088 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0011831 ! duct of vestibular gland +intersection_of: UBERON:0000058 ! duct +intersection_of: part_of UBERON:0000460 ! major vestibular gland +relationship: part_of UBERON:0000460 ! major vestibular gland +relationship: sexually_homologous_to UBERON:0010151 ! duct of bulbourethral gland + +[Term] +id: UBERON:0010151 +name: duct of bulbourethral gland +def: "A duct that is part of a bulbo-urethral gland." [OBOL:automatic] +synonym: "bulbourethral gland duct" EXACT [FMA:20091] +synonym: "duct of bulbo-urethral gland" EXACT [FMA:20091] +synonym: "ductus glandulae bulbourethralis" EXACT LATIN [FMA:TA] +xref: FMA:20091 +xref: http://www.snomedbrowser.com/Codes/Details/279709005 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005904 ! duct of male reproductive system +intersection_of: UBERON:0000058 ! duct +intersection_of: part_of UBERON:0002366 ! bulbo-urethral gland +relationship: part_of UBERON:0002366 ! bulbo-urethral gland + +[Term] +id: UBERON:0010152 +name: skin mucus +def: "A mucous secretion that is produced by glands in the epidermis." [http://orcid.org/0000-0002-6601-2165] +synonym: "epidermal mucus" RELATED [BTO:0005082] +synonym: "skin mucous" RELATED [] +is_a: UBERON:0000912 ! mucus +intersection_of: UBERON:0000912 ! mucus +intersection_of: produced_by UBERON:0004790 ! skin mucous gland +relationship: produced_by UBERON:0004790 ! skin mucous gland + +[Term] +id: UBERON:0010153 +name: rumen papilla +synonym: "rumen papillae" EXACT PLURAL [] +xref: http://www.snomedbrowser.com/Codes/Details/43386000 +is_a: UBERON:0004529 ! anatomical projection +relationship: part_of UBERON:0008285 ! rumen epithelium + +[Term] +id: UBERON:0010154 +name: inner lining mucosa of the abomasum +def: "The inner mucosa of the fourth stomach chamber of a ruminant produces rennet." [http://en.wikipedia.org/wiki/Rennet] +synonym: "muscoa of abomasum" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "muscoa of fourth stomach" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "rennet" RELATED [BTO:0001168] +xref: BTO:0001168 +xref: http://en.wikipedia.org/wiki/Rennet +is_a: UBERON:0006931 ! stomach glandular region mucosa +relationship: part_of UBERON:0007358 {source="BTO"} ! abomasum + +[Term] +id: UBERON:0010155 +name: parietomastoid suture +def: "unites the mastoid process of the temporal with the region of the mastoid angle of the parietal[WP:Squamosal_suture]." [http://orcid.org/0000-0002-6601-2165] +synonym: "parieto-mastoid suture of skull" EXACT [] +synonym: "parietomastoid suture of skull" EXACT [FMA:52947] +xref: FMA:52947 +xref: http://www.snomedbrowser.com/Codes/Details/136753005 +is_a: UBERON:0003685 {source="FMA"} ! cranial suture +relationship: connects UBERON:0000210 ! tetrapod parietal bone +relationship: connects UBERON:0001678 ! temporal bone + +[Term] +id: UBERON:0010156 +name: sphenofrontal suture +def: "The Sphenofrontal suture is the cranial suture between the sphenoid bone and the frontal bone." [http://en.wikipedia.org/wiki/Sphenofrontal_suture] +synonym: "frontosphenoid suture" EXACT [FMA:52938] +synonym: "spheno-frontal suture" RELATED [] +synonym: "sphenofrontal" RELATED [http://en.wikipedia.org/wiki/Sphenofrontal_suture] +synonym: "sphenofrontal suture of skull" EXACT [FMA:52938] +synonym: "sutura sphenofrontalis" RELATED LATIN [http://en.wikipedia.org/wiki/Sphenofrontal_suture] +synonym: "sutura sphenofrontalis" RELATED [http://en.wikipedia.org/wiki/Sphenofrontal_suture] +xref: FMA:52938 +xref: http://www.snomedbrowser.com/Codes/Details/136349005 +xref: Sphenofrontal:suture +is_a: UBERON:0003685 ! cranial suture +intersection_of: UBERON:0003685 ! cranial suture +intersection_of: connects UBERON:0000209 ! tetrapod frontal bone +intersection_of: connects UBERON:0001677 ! sphenoid bone +relationship: connects UBERON:0000209 ! tetrapod frontal bone +relationship: connects UBERON:0001677 ! sphenoid bone + +[Term] +id: UBERON:0010157 +name: sphenoparietal suture +def: "The Sphenoparietal suture is the cranial suture between the sphenoid bone and the parietal bone." [http://en.wikipedia.org/wiki/Sphenoparietal_suture] +synonym: "spheno-parietal suture" EXACT [] +synonym: "sphenoparietal suture of skull" EXACT [FMA:52945] +synonym: "sutura sphenoparietalis" RELATED LATIN [http://en.wikipedia.org/wiki/Sphenoparietal_suture] +xref: FMA:52945 +xref: http://www.snomedbrowser.com/Codes/Details/136551005 +xref: Sphenoparietal:suture +is_a: UBERON:0003685 ! cranial suture +intersection_of: UBERON:0003685 ! cranial suture +intersection_of: connects UBERON:0000210 ! tetrapod parietal bone +intersection_of: connects UBERON:0001677 ! sphenoid bone +relationship: connects UBERON:0000210 ! tetrapod parietal bone +relationship: connects UBERON:0001677 ! sphenoid bone + +[Term] +id: UBERON:0010158 +name: sphenozygomatic suture +def: "The Sphenozygomatic suture is the cranial suture between the sphenoid bone and the zygomatic bone." [http://en.wikipedia.org/wiki/Sphenozygomatic_suture] +synonym: "sphenozygomatica suture of skull" EXACT [FMA:52956] +synonym: "sutura sphenozygomatica" RELATED LATIN [http://en.wikipedia.org/wiki/Sphenozygomatic_suture] +xref: FMA:52956 +xref: http://www.snomedbrowser.com/Codes/Details/368980007 +xref: Sphenozygomatic:suture +is_a: UBERON:0003685 ! cranial suture +intersection_of: UBERON:0003685 ! cranial suture +intersection_of: connects UBERON:0001677 ! sphenoid bone +intersection_of: connects UBERON:0001683 ! jugal bone +relationship: connects UBERON:0001677 ! sphenoid bone +relationship: connects UBERON:0001683 ! jugal bone + +[Term] +id: UBERON:0010159 +name: occipitomastoid suture +def: "The occipitomastoid suture is the cranial suture between the occipital bone and the mastoid portion of the temporal bone. It is continuous with the lambdoidal suture." [http://en.wikipedia.org/wiki/Occipitomastoid_suture] +synonym: "occipito-mastoid suture" RELATED [http://en.wikipedia.org/wiki/Occipitomastoid_suture] +synonym: "occipitomastoid suture of skull" EXACT [FMA:52934] +synonym: "sutura occipitomastoidea" RELATED LATIN [http://en.wikipedia.org/wiki/Occipitomastoid_suture] +synonym: "sutura occipitomastoidea" RELATED [http://en.wikipedia.org/wiki/Occipitomastoid_suture] +xref: FMA:52934 +xref: http://www.snomedbrowser.com/Codes/Details/134136005 +xref: Occipitomastoid:suture +is_a: UBERON:0003685 {source="FMA"} ! cranial suture +relationship: connects UBERON:0001676 ! occipital bone +relationship: connects UBERON:0001678 ! temporal bone + +[Term] +id: UBERON:0010160 +name: lumen of lymphatic vessel +def: "An anatomical cavity that surrounded_by a lymphatic vessel." [OBOL:automatic] +synonym: "lumen of lymphatic duct" EXACT [FMA:59681] +synonym: "lymphatic vessel lumen" EXACT [FMA:59681] +xref: FMA:59681 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0001473 ! lymphatic vessel +relationship: luminal_space_of UBERON:0001473 ! lymphatic vessel +relationship: part_of UBERON:0001473 ! lymphatic vessel + +[Term] +id: UBERON:0010161 +name: lumen of blood vessel +def: "An anatomical cavity that surrounded_by a blood vessel." [OBOL:automatic] +synonym: "blood vessel lumen" EXACT [] +xref: FMA:312610 +xref: http://www.snomedbrowser.com/Codes/Details/91747007 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0001981 ! blood vessel +relationship: luminal_space_of UBERON:0001981 ! blood vessel +relationship: part_of UBERON:0001981 ! blood vessel + +[Term] +id: UBERON:0010162 +name: post-anal tail tip +def: "The distal end of the tail" [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "end of tail" RELATED [MA:0002848] +synonym: "tail tip" EXACT [MA:0002848] +xref: EMAPA:37760 {source="MA:th"} +xref: MA:0002848 +xref: XAO:0004057 +is_a: UBERON:0011676 ! subdivision of organism along main body axis +intersection_of: UBERON:0011676 ! subdivision of organism along main body axis +intersection_of: distalmost_part_of UBERON:0007812 ! post-anal tail +relationship: distalmost_part_of UBERON:0007812 ! post-anal tail +relationship: part_of UBERON:0007812 {source="MA"} ! post-anal tail + +[Term] +id: UBERON:0010163 +name: eyebrow +def: "The eyebrow is an area of thick, delicate hairs above the eye that follows the shape of the lower margin of the brow ridges. Their main function is to protect the eye, but they are also important to human communication and facial expression. It is not uncommon for people to modify their eyebrows by means of hair addition or removal, make up, or piercings." [http://en.wikipedia.org/wiki/Eyebrow] +subset: pheno_slim +subset: phenotype_rcn +synonym: "supercilium" RELATED LATIN [http://en.wikipedia.org/wiki/Eyebrow] +xref: FMA:54237 +xref: http://en.wikipedia.org/wiki/Eyebrow +xref: http://linkedlifedata.com/resource/umls/id/C0015420 +xref: http://www.snomedbrowser.com/Codes/Details/265781000 +xref: MESH:D005138 +xref: NCIT:C32575 +xref: UMLS:C0015420 {source="ncithesaurus:Eyebrow"} +is_a: UBERON:0010165 {source="FMA"} ! collection of hair on face +relationship: part_of UBERON:0035639 ! ocular adnexa + +[Term] +id: UBERON:0010164 +name: collection of hairs +def: "An anatomical cluster that composed_primarily_of a strand of hair." [OBOL:automatic] +synonym: "hairs" EXACT [FMA:70752] +synonym: "hairs set" EXACT [FMA:70752] +synonym: "pili" EXACT LATIN [FMA:TA] +synonym: "set of hairs" EXACT [FMA:70752] +xref: FMA:70752 +is_a: UBERON:0034925 ! anatomical collection +intersection_of: UBERON:0034925 ! anatomical collection +intersection_of: has_member UBERON:0001037 ! strand of hair +relationship: has_member UBERON:0001037 ! strand of hair + +[Term] +id: UBERON:0010165 +name: collection of hair on face +def: "A collection of hairs that is part of a face." [OBOL:automatic] +subset: phenotype_rcn +synonym: "facial hair" RELATED [] +synonym: "facial hairs set" EXACT [FMA:70741] +synonym: "set of facial hairs" EXACT [FMA:70741] +xref: FMA:70741 +is_a: UBERON:0014382 ! collection of hairs on head or neck +intersection_of: UBERON:0010164 ! collection of hairs +intersection_of: part_of UBERON:0001456 ! face +relationship: has_member UBERON:0010171 ! strand of hair of face +relationship: part_of UBERON:0001456 ! face + +[Term] +id: UBERON:0010166 +name: coat of hair +def: "." [http://en.wikipedia.org/wiki/Coat_(animal)] +subset: pheno_slim +subset: phenotype_rcn +synonym: "coat" BROAD [] +synonym: "coat pelt" RELATED [] +synonym: "fleece" BROAD [] +synonym: "fur coat" NARROW [] +synonym: "hair coat" EXACT [] +synonym: "lanugo" NARROW [] +synonym: "mane" NARROW [] +synonym: "pelage" RELATED [] +synonym: "pelt" RELATED [] +synonym: "set of coat hairs" EXACT [] +synonym: "velli" NARROW [] +synonym: "wool coat" NARROW [] +synonym: "wooly coat" NARROW [] +xref: Coat:(animal) +xref: EMAPA:36485 +xref: NCIT:C88212 +is_a: UBERON:0010164 ! collection of hairs + +[Term] +id: UBERON:0010167 +name: beard +def: "The collection of hair that grows on the chin, cheeks and neck of human beings. Usually, only pubescent or adult males are able to grow beards. However, women with hirsutism may develop a beard. When differentiating between upper and lower facial hair, a beard specifically includes the moustache, which refers to hair above the upper lip and around it." [http://en.wikipedia.org/wiki/Beard] +subset: phenotype_rcn +xref: FMA:54240 +xref: http://en.wikipedia.org/wiki/Beard +xref: http://www.snomedbrowser.com/Codes/Details/256924005 +is_a: UBERON:0010165 {source="FMA"} ! collection of hair on face +relationship: posterior_to UBERON:0004089 ! midface + +[Term] +id: UBERON:0010168 +name: collection of eyelashes +def: "A collection of hair on face that is part of a eyelash." [OBOL:automatic] +synonym: "cilia" EXACT LATIN [FMA:TA] +synonym: "eyelashes" EXACT [FMA:70742] +synonym: "eyelashes set" EXACT [FMA:70742] +synonym: "set of eyelashes" EXACT [FMA:70742] +xref: FMA:70742 +xref: http://www.snomedbrowser.com/Codes/Details/367575006 +is_a: UBERON:0010165 ! collection of hair on face +intersection_of: UBERON:0010165 ! collection of hair on face +intersection_of: has_member UBERON:0001702 ! eyelash +relationship: has_member UBERON:0001702 ! eyelash + +[Term] +id: UBERON:0010169 +name: moustache +def: "facial hair grown on the outer surface of the upper lip. It may or may not be accompanied by a type of beard, a facial hair style grown and cropped to cover most of the lower half of the face." [http://en.wikipedia.org/wiki/Moustache] +subset: phenotype_rcn +synonym: "mustache" EXACT [] +synonym: "set of hair of upper lip proper" RELATED [FMA:59652] +xref: FMA:59652 +xref: http://en.wikipedia.org/wiki/Moustache +xref: http://www.snomedbrowser.com/Codes/Details/256925006 +is_a: UBERON:0010165 {source="FMA"} ! collection of hair on face +relationship: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0010170 +name: region of neural crest +xref: EMAPA:32737 +xref: TAO:0000045 +xref: ZFA:0000045 +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0002342 ! neural crest + +[Term] +id: UBERON:0010171 +name: strand of hair of face +def: "A strand of hair that is part of a face." [OBOL:automatic] +subset: pheno_slim +synonym: "face hair" EXACT [FMA:54360] +synonym: "face hair strand" EXACT [] +synonym: "facial hair" RELATED [FMA:54360] +synonym: "hair of face" EXACT [FMA:54360] +xref: FMA:54360 +xref: http://www.snomedbrowser.com/Codes/Details/368910000 +is_a: UBERON:0016446 ! hair of head +intersection_of: UBERON:0001037 ! strand of hair +intersection_of: part_of UBERON:0001456 ! face +relationship: part_of UBERON:0001456 ! face + +[Term] +id: UBERON:0010172 +name: bulb of aorta +def: "The portion of the left ventricular outflow tract delineated by the sinotubular ridge superiorly and the bases of the valve leaflets inferiorly; it comprises the aortic sinuses, the aortic valve leaflets, the commissures, and the interleaflet triangles" [MP:0011572] +subset: pheno_slim +synonym: "aorta bulb" EXACT [MP:0011575] +synonym: "aortic bulb" EXACT [FMA:3740] +synonym: "aortic root" EXACT [MP:0011572] +synonym: "bulb of ascending aorta" EXACT [FMA:3740] +synonym: "bulbus aortae" EXACT LATIN [FMA:TA] +synonym: "root of aorta" EXACT [FMA:3740] +synonym: "supraaortic valve area" EXACT [FMA:3740] +xref: BTO:0004695 +xref: FMA:3740 +xref: http://www.snomedbrowser.com/Codes/Details/362032000 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0001496 ! ascending aorta +relationship: part_of UBERON:0001496 {source="FMA"} ! ascending aorta + +[Term] +id: UBERON:0010173 +name: sinotubular junction +def: "The point in the ascending aorta where the aortic sinuses end and the aorta becomes a tubular structure" [MP:0011572] +subset: pheno_slim +synonym: "sinotubular ridge" EXACT [MP:0011572] +xref: EMAPA:37951 {source="MA:th"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0007651 ! anatomical junction +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0001496 ! ascending aorta +relationship: part_of UBERON:0001496 {source="MP"} ! ascending aorta + +[Term] +id: UBERON:0010174 +name: Schweigger-Seidel sheath +def: "A phagocytic sleeve that is part of a sheathed arteriole of the spleen, and is sometimes referred to as a splenic ellipsoid. It is a spindle-shaped thickening in the walls of the second part of the arterial branches forming the penicilli in the spleen" [http://en.wikipedia.org/wiki/Schweigger-Seidel_sheath, PMCID:PMC3204613] +xref: Schweigger-Seidel:sheath +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0001980 ! arteriole +relationship: part_of UBERON:0002106 ! spleen + +[Term] +id: UBERON:0010175 +name: nutrient foramen vein +def: "A vein or veins draining a bone and emerging from a nutrient foramen." [http://www.medilexicon.com/medicaldictionary.php?t=97392] +synonym: "nutrient vein" EXACT [FMA:50780] +synonym: "vena nutricia" RELATED LATIN [] +xref: FMA:50780 +is_a: UBERON:0001638 ! vein +relationship: drains UBERON:0001474 ! bone element + +[Term] +id: UBERON:0010176 +name: nutrient foramen artery +def: "The medullary or nutrient artery, usually accompanied by one or two veins, sends branches upward and downward to the bone marrow, which ramify in the medullary membrane, and give twigs to the adjoining canals." [http://en.wikipedia.org/wiki/Nutrient_artery] +synonym: "a. nutricia" RELATED LATIN [http://en.wikipedia.org/wiki/Nutrient_artery] +synonym: "a. nutriens" RELATED LATIN [http://en.wikipedia.org/wiki/Nutrient_artery] +synonym: "aretria nutricia" RELATED LATIN [] +synonym: "nutrient artery" EXACT [FMA:50779] +xref: FMA:50779 +xref: http://linkedlifedata.com/resource/umls/id/C0278431 +xref: http://www.snomedbrowser.com/Codes/Details/337318006 +xref: NCIT:C33189 +xref: Nutrient:artery +xref: UMLS:C0278431 {source="ncithesaurus:Nutrient_Artery"} +is_a: UBERON:0004573 {source="FMA"} ! systemic artery +relationship: supplies UBERON:0001474 ! bone element + +[Term] +id: UBERON:0010181 +name: straight venules of kidney +def: "The straight venules of kidney are branches from the plexuses at the apices of the medullary pyramids, formed by the terminations of the arteriae rectae. They run outward in a straight course between the tubes of the medullary substance, and joining, as above stated, the interlobular veins, form venous arcades; these in turn unite and form veins which pass along the sides of the pyramids. Contains fenestrated capillaries." [http://en.wikipedia.org/wiki/Straight_venules_of_kidney] +synonym: "set of straight venules of kidney" EXACT [FMA:72007] +synonym: "venae rectae" RELATED [http://en.wikipedia.org/wiki/Straight_venules_of_kidney] +synonym: "venulae rectae" RELATED [http://en.wikipedia.org/wiki/Straight_venules_of_kidney] +synonym: "venulae rectae of kidney" EXACT [FMA:72007] +synonym: "venulae rectae renis" EXACT LATIN [FMA:TA] +synonym: "venulae rectae renis" RELATED LATIN [http://en.wikipedia.org/wiki/Straight_venules_of_kidney] +synonym: "venulae recti" RELATED [http://en.wikipedia.org/wiki/Straight_venules_of_kidney] +xref: FMA:72007 +xref: http://en.wikipedia.org/wiki/Straight_venules_of_kidney +xref: http://www.snomedbrowser.com/Codes/Details/245983001 +is_a: UBERON:0005629 ! vascular plexus +is_a: UBERON:0006544 ! kidney vasculature + +[Term] +id: UBERON:0010183 +name: liver trabecula +def: "A trabecula that is part of a liver" [GO:0060344, OBOL:automatic] +synonym: "hepatic trabecula" RELATED [] +is_a: UBERON:0000440 ! trabecula +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000440 ! trabecula +intersection_of: part_of UBERON:0002107 ! liver +relationship: part_of UBERON:0002107 ! liver + +[Term] +id: UBERON:0010185 +name: rete ovarii +def: "A structure formed from the primary sex cords in females, counterpart of the rete testis in males." [http://en.wikipedia.org/wiki/Rete_ovarii] +subset: pheno_slim +synonym: "rete ovarii of ovary" EXACT [MA:0003237] +xref: EMAPA:17966 +xref: http://linkedlifedata.com/resource/umls/id/C0227880 +xref: http://www.snomedbrowser.com/Codes/Details/259261007 +xref: MA:0003237 +xref: NCIT:C61561 +xref: Rete:ovarii +xref: UMLS:C0227880 {source="ncithesaurus:Rete_Ovarii"} +is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: develops_from UBERON:0005296 ! ovary sex cord +relationship: part_of UBERON:0000992 ! ovary + +[Term] +id: UBERON:0010186 +name: male urethral gland +def: "any of the numerous small mucous-secreting glands located in the wall of the penile urethra" [MGI:anna, MP:0011794] +subset: pheno_slim +synonym: "gland of Littre" EXACT [] +synonym: "gland of male urethra" EXACT [] +synonym: "glandulae urethrales urethrae masculinae" RELATED LATIN [http://en.wikipedia.org/wiki/Urethral_gland] +synonym: "Littre's gland" EXACT [FMA:21443] +synonym: "male urethra gland" EXACT [] +synonym: "urethral gland (male)" EXACT [FMA:21443] +xref: EMAPA:29645 +xref: FMA:21443 +xref: http://linkedlifedata.com/resource/umls/id/C1314737 +xref: http://www.snomedbrowser.com/Codes/Details/303562001 +xref: NCIT:C49311 +xref: UMLS:C1314737 {source="ncithesaurus:Urethral_Gland"} +xref: Urethral:gland +is_a: UBERON:0001338 ! urethral gland +intersection_of: UBERON:0001338 ! urethral gland +intersection_of: part_of UBERON:0001333 ! male urethra +relationship: part_of UBERON:0001333 ! male urethra + +[Term] +id: UBERON:0010187 +name: female urethral gland +def: "An urethral gland that is part of a female urethra." [OBOL:automatic] +synonym: "female urethra gland" EXACT [] +synonym: "gland of female urethra" EXACT [] +synonym: "urethral gland (female)" EXACT [FMA:21444] +xref: EMAPA:29653 +xref: FMA:21444 +xref: http://www.snomedbrowser.com/Codes/Details/279476001 +is_a: UBERON:0001338 ! urethral gland +intersection_of: UBERON:0001338 ! urethral gland +intersection_of: part_of UBERON:0001334 ! female urethra +relationship: part_of UBERON:0001334 ! female urethra + +[Term] +id: UBERON:0010188 +name: protuberance +def: "A roughly circular bulge in a surface." [EHDAA2:0003250] +xref: AEO:0000205 +xref: EHDAA2:0003250 +xref: FMA:82506 +is_a: UBERON:0034944 {source="FMA"} ! zone of organ + +[Term] +id: UBERON:0010189 +name: right atrium venous valve +synonym: "right venous valve" RELATED [EHDAA2:0001762] +xref: EHDAA2:0001762 +xref: EMAPA:17010 +xref: EMAPA:17328 +xref: MA:0001872 +is_a: UBERON:0005208 ! right atrium valve +is_a: UBERON:0006675 ! venous valve +intersection_of: UBERON:0006675 ! venous valve +intersection_of: part_of UBERON:0002078 ! right cardiac atrium + +[Term] +id: UBERON:0010190 +name: pair of dorsal aortae +def: "the paired arterial structures of the embryo that supplies each developing somite via efferent segmental arteries; the dorsal aortae articulate with the umbilical arteries, which return mixed blood to the villi of the chorion for reoxygenation" [ISBN:0-914294-08-3, MP:0004787] +subset: pheno_slim +synonym: "paired dorsal aortae" EXACT [EHDAA2:0000410] +xref: EHDAA2:0000410 +xref: EMAPA:18606 +xref: MA:0000476 +is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure +relationship: has_part UBERON:0005805 ! dorsal aorta +relationship: part_of UBERON:0010191 {source="EHDAA2"} ! aortic system + +[Term] +id: UBERON:0010191 +name: aortic system +xref: EHDAA2:0004512 +is_a: UBERON:0011216 ! organ system subdivision +relationship: part_of UBERON:0004571 {source="Wikipedia"} ! systemic arterial system + +[Term] +id: UBERON:0010192 +name: genital artery +def: "One of the laterally paired arteries that supply the gonads." [http://en.wikipedia.org/wiki/Gonadal_artery, ISBN:0073040584] +synonym: "gonadal artery" EXACT [] +xref: Gonadal:artery +is_a: UBERON:0012254 ! abdominal aorta artery +intersection_of: UBERON:0004573 ! systemic artery +intersection_of: supplies UBERON:0000991 ! gonad +relationship: supplies UBERON:0000991 ! gonad + +[Term] +id: UBERON:0010193 +name: renal portal vein +def: "A portal vein that empties into capillaries within the kidneys." [ISBN:0073040584] +synonym: "renal portal veins" EXACT PLURAL [ZFA:0000577] +xref: TAO:0000577 +xref: ZFA:0000577 +is_a: UBERON:0001638 {source="ZFA"} ! vein +is_a: UBERON:0003513 ! trunk blood vessel +relationship: part_of UBERON:0002201 {source="ZFA"} ! vasculature of trunk + +[Term] +id: UBERON:0010194 +name: hepatic portal system +def: "A portal system that begins in capillaries in the wall of the digestive tract and and runs as the hepatic portal vein to the liver." [ISBN:0073040584] +synonym: "hepatic-portal system" EXACT [AAO:0010225] +synonym: "portal system of liver" EXACT [] +xref: AAO:0010225 +is_a: UBERON:0005806 ! portal system +relationship: connects UBERON:0001555 ! digestive tract +relationship: connects UBERON:0002107 ! liver + +[Term] +id: UBERON:0010195 +name: renal portal system +def: "A portal system that transports blood returning from capillary beds within tail or hindlimbs through paired renal portal veins that empty into capillaries within the kidneys." [ISBN:0073040584] +synonym: "portal system of kidney" EXACT [] +synonym: "renal-portal system" EXACT [AAO:0010518] +xref: AAO:0010518 +is_a: UBERON:0005806 ! portal system + +[Term] +id: UBERON:0010197 +name: trunk of common carotid artery +def: "The initial part of the entire common carotid artery ending with the point where the artery bifurcates into an external carotid artery and an internal carotid artery." [https://orcid.org/0000-0002-6601-2165] +synonym: "common carotid arterial trunk" EXACT [FMA:69323] +synonym: "common carotid artery" RELATED INCONSISTENT [EHDAA2:0000306] +xref: EHDAA2:0000306 +xref: EMAPA:17855 +xref: FMA:69323 +is_a: UBERON:0005396 ! carotid artery segment +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001530 {source="FMA"} ! common carotid artery plus branches + +[Term] +id: UBERON:0010198 +name: carotid duct +def: "A segment of the embryonic dorsal aorta between points of juncture with the third and fourth arch arteries; it regresses early in development to allow the carotid axis to take its definitive appearance." [http://www.medilexicon.com/medicaldictionary.php?s=ductus+caroticus, MP:MP] +subset: pheno_slim +synonym: "ductus caroticus" EXACT [EMAPA:17006] +xref: EMAPA:17006 +xref: http://www.snomedbrowser.com/Codes/Details/340062006 +is_a: UBERON:0003513 ! trunk blood vessel +is_a: UBERON:0004573 ! systemic artery +relationship: continuous_with UBERON:0003120 ! pharyngeal arch artery 3 +relationship: continuous_with UBERON:0003121 ! pharyngeal arch artery 4 +relationship: part_of UBERON:0005805 ! dorsal aorta + +[Term] +id: UBERON:0010199 +name: bona-fide anatomical boundary +def: "An anatomical boundary that corresponds to some physical discontinuity." [CARO:0001004] +comment: One might argue that all boundaries are actually fiat in the sense that there must be some fiat element at a fine enough scale of granularity. This ontology choses to ignore this issue as below the level of granularity relevant to anatomy. (DOS121102) +subset: upper_level +xref: CARO:0001004 +is_a: UBERON:0000466 {source="CARO"} ! immaterial anatomical entity + +[Term] +id: UBERON:0010202 +name: lateral line +def: "The lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The lateral line develops from cranial ectodermal placodes situated behind the ear and between the eye and ear." [http://en.wikipedia.org/wiki/Lateral_line, ZFA:0001469] +synonym: "lateral lines" EXACT PLURAL [ZFA:0001469] +xref: AAO:0011128 +xref: Lateral:line +xref: TAO:0001469 +xref: XAO:0004002 +xref: ZFA:0001469 +is_a: UBERON:0000479 {source="ZFA"} ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: develops_from UBERON:0009128 ! lateral line placode +relationship: part_of UBERON:0002540 {source="ZFA"} ! lateral line system + +[Term] +id: UBERON:0010204 +name: tail vasculature +def: "A vasculature that is part of a post-anal tail." [OBOL:automatic] +synonym: "post-vent vasculature" EXACT [ZFA:0005037] +synonym: "tail vasculature" RELATED [ZFA:0005037] +xref: TAO:0005037 +xref: XAO:0004151 +xref: ZFA:0005037 +is_a: UBERON:0002049 ! vasculature +intersection_of: UBERON:0002049 ! vasculature +intersection_of: part_of UBERON:0007812 ! post-anal tail +relationship: part_of UBERON:0007812 ! post-anal tail + +[Term] +id: UBERON:0010205 +name: mesencephalic vein +def: "One of the several veins that drain the mesencephalon; the posterior ones are tributaries to the great cerebral vein; the lateral ones are tributaries to the basal vein. The main veins are: pontomesencephalic vein [TA] (vena pontomesencephalica [TA]), interpeduncular veins [TA] (venae interpedunculares [TA]), intercollicular vein [TA] (vena intercollicularis [TA]), and lateral mesencephalic vein [TA] (vena mesencephalica lateralis [TA])[MedLex]. The major vein of the midbrain, which crosses the midbrain medially to meet it's partner the mesencephalic artery[XAO]." [http://www.medilexicon.com/medicaldictionary.php?t=97378, XAO:0004174] +synonym: "msv" RELATED [TAO:0005092] +synonym: "vena mesencephalica" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=venae+mesencephalicae] +synonym: "venae mesencephalicae" EXACT PLURAL [http://www.medilexicon.com/medicaldictionary.php?s=venae+mesencephalicae] +xref: http://www.snomedbrowser.com/Codes/Details/43225002 +xref: TAO:0005092 +xref: XAO:0004174 +xref: ZFA:0005092 +is_a: UBERON:0001638 {source="XAO"} ! vein + +[Term] +id: UBERON:0010207 +name: nictitating membrane +def: "A fold of the mucous membrane of the conjunctiva in many animals. At rest, it is hidden in the medial canthus. It can extend to cover part or all of the cornea to help clean the cornea." [http://en.wikipedia.org/wiki/Nictitating_membrane, MESH:A13.660] +subset: pheno_slim +synonym: "haw" RELATED [http://en.wikipedia.org/wiki/Nictitating_membrane] +synonym: "membrana nictitans" EXACT LATIN [http://en.wikipedia.org/wiki/Nictitating_membrane] +synonym: "nictitans" EXACT [http://tolweb.org/Amniota] +synonym: "palperbra tertia" EXACT LATIN [http://www.ncbi.nlm.nih.gov/pubmed/7559104] +synonym: "third eyelid" EXACT [MESH:A13.660] +xref: http://en.wikipedia.org/wiki/File\:Chickenblinking.jpg +xref: http://linkedlifedata.com/resource/umls/id/C0028058 +xref: http://www.snomedbrowser.com/Codes/Details/113326005 +xref: MESH:D009541 +xref: NCIT:C77657 +xref: Nictitating:membrane +xref: UMLS:C0028058 {source="ncithesaurus:Nictitating_Membrane"} +is_a: UBERON:0001711 ! eyelid +relationship: part_of UBERON:0001811 ! conjunctiva +relationship: present_in_taxon NCBITaxon:261739 +relationship: present_in_taxon NCBITaxon:8292 +relationship: present_in_taxon NCBITaxon:8782 +relationship: present_in_taxon NCBITaxon:9632 +relationship: present_in_taxon NCBITaxon:9709 +relationship: present_in_taxon NCBITaxon:9816 +relationship: present_in_taxon NCBITaxon:9835 + +[Term] +id: UBERON:0010209 +name: plica semilunaris of conjunctiva +def: "The plica semilunaris is a small fold of bulbar conjunctiva on the medial canthus of the eye. It is loose, so that eye movements are not restricted." [http://en.wikipedia.org/wiki/Plica_semilunaris_of_conjunctiva] +synonym: "plica semilunaris (conjunctiva)" EXACT [FMA:59045] +synonym: "plica semilunaris conjunctivae" RELATED LATIN [http://en.wikipedia.org/wiki/Plica_semilunaris_of_conjunctiva] +synonym: "plica semilunaris of the conjunctiva" RELATED [http://en.wikipedia.org/wiki/Plica_semilunaris_of_conjunctiva] +synonym: "semilunar fold of conjunctiva" EXACT [FMA:59045] +xref: FMA:59045 +xref: http://en.wikipedia.org/wiki/Plica_semilunaris_of_conjunctiva +xref: http://www.snomedbrowser.com/Codes/Details/280686009 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005160 {source="Wikipedia"} ! vestigial structure +relationship: part_of UBERON:0001811 {source="FMA"} ! conjunctiva + +[Term] +id: UBERON:0010210 +name: blood clot +def: "A semisolid gelatinous mass of coagulated blood that consists of red blood cells, white blood cells, and platelets entrapped in a fibrin network." [BTO:0000102, http://en.wikipedia.org/wiki/Thrombus] +synonym: "clot" NARROW [] +synonym: "coagulated blood" EXACT [] +synonym: "fibrin clot" EXACT [] +synonym: "hemostatic plug" EXACT [http://en.wikipedia.org/wiki/Thrombus] +synonym: "thrombus" EXACT [BTO:0000102] +xref: BTO:0000102 +xref: galen:BloodClot +xref: http://en.wikipedia.org/wiki/Thrombus +is_a: UBERON:0000463 ! organism substance +relationship: develops_from UBERON:0000178 {source="BTO"} ! blood + +[Term] +id: UBERON:0010211 +name: granulation tissue +def: "Highly vascularized tissue that replaces the initial fibrin clot in a wound. Vascularization is by ingrowth of capillary endothelium from the surrounding vasculature. The tissue is also rich in fibroblasts (that will eventually produce the fibrous tissue) and leucocytes." [BTO:0003257] +xref: BTO:0003257 +xref: MESH:D006097 +is_a: UBERON:0002384 {source="BTO"} ! connective tissue +relationship: has_developmental_contribution_from UBERON:0010210 ! blood clot + +[Term] +id: UBERON:0010212 +name: laryngeal apparatus +def: "Apparatus located between the lungs and the buccal cavity. This apparatus is composed of a pair of arytenoid cartilages that are supported by the cricoid ring." [AAO:0000267] +synonym: "laryngeal cartilage system" EXACT [EHDAA2:0000904] +xref: AAO:0000267 +xref: EHDAA2:0000904 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0034921 ! multi organ part structure +relationship: composed_primarily_of UBERON:0001739 ! laryngeal cartilage +relationship: part_of UBERON:0001737 {source="EHDAA2"} ! larynx +relationship: part_of UBERON:0008895 ! splanchnocranium + +[Term] +id: UBERON:0010213 +name: laryngeal pre-cartilage condensation +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0010221 {source="EHDAA2-abstracted"} ! laryngeal associated mesenchyme +relationship: part_of UBERON:0010212 {source="EHDAA2-abstracted"} ! laryngeal apparatus + +[Term] +id: UBERON:0010214 +name: cricoid pre-cartilage condensation +xref: EHDAA2:0000327 +is_a: UBERON:0010213 ! laryngeal pre-cartilage condensation + +[Term] +id: UBERON:0010215 +name: arytenoid swellings +def: "paired primordial elevations, on either side of the embryonic larynx, within which the arytenoid cartilages are formed" [http://www.medilexicon.com/medicaldictionary.php?t=87317] +xref: EHDAA2:0000146 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0005856 {source="EHDAA2"} ! developing mesenchymal condensation +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0010221 {source="EHDAA2"} ! laryngeal associated mesenchyme +relationship: part_of UBERON:0010212 {source="EHDAA2"} ! laryngeal apparatus + +[Term] +id: UBERON:0010219 +name: thyroid pre-cartilage condensation +xref: EHDAA2:0004088 +is_a: UBERON:0010213 ! laryngeal pre-cartilage condensation + +[Term] +id: UBERON:0010220 +name: arytenoid pre-cartilage condensation +synonym: "arytenoid swelling pre-cartilage condensation" EXACT [EMAPA:17387] +xref: EHDAA2:0000144 +xref: EMAPA:17387 +xref: VHOG:0000998 +is_a: UBERON:0010213 ! laryngeal pre-cartilage condensation +relationship: develops_from UBERON:0010215 {source="EHDAA2"} ! arytenoid swellings + +[Term] +id: UBERON:0010221 +name: laryngeal associated mesenchyme +comment: Many sources say: thyroid cartilage from arch 4 other laryngeal cartilage (cricoid/arytenoid) from 6? +xref: EHDAA2:0004085 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0002539 {source="Wikipedia"} ! pharyngeal arch +relationship: has_developmental_contribution_from UBERON:0003115 {source="Wikipedia"} ! pharyngeal arch 4 +relationship: has_developmental_contribution_from UBERON:0003117 {source="Wikipedia"} ! pharyngeal arch 6 +relationship: part_of UBERON:0001737 {source="EHDAA2"} ! larynx +relationship: part_of UBERON:0008895 ! splanchnocranium + +[Term] +id: UBERON:0010222 +name: anatomical line between pupils +subset: pheno_slim +synonym: "inter-pupillary line" EXACT [] +synonym: "interpupillary line" EXACT [] +is_a: UBERON:0006800 ! anatomical line +intersection_of: UBERON:0006800 ! anatomical line +intersection_of: connects UBERON:0010223 ! left pupil +intersection_of: connects UBERON:0010224 ! right pupil +relationship: connects UBERON:0010223 ! left pupil +relationship: connects UBERON:0010224 ! right pupil +relationship: part_of UBERON:0001456 ! face + +[Term] +id: UBERON:0010223 +name: left pupil +def: "A pupil that is part of a left eye." [OBOL:automatic] +synonym: "pupil of left eye" EXACT [FMA:58254] +xref: FMA:58254 +xref: http://www.snomedbrowser.com/Codes/Details/368597006 +is_a: UBERON:0001771 ! pupil +intersection_of: UBERON:0001771 ! pupil +intersection_of: part_of UBERON:0004548 ! left eye +relationship: part_of UBERON:0004548 ! left eye + +[Term] +id: UBERON:0010224 +name: right pupil +def: "A pupil that is part of a right eye." [OBOL:automatic] +synonym: "pupil of right eye" EXACT [FMA:58253] +xref: FMA:58253 +xref: http://www.snomedbrowser.com/Codes/Details/368575009 +is_a: UBERON:0001771 ! pupil +intersection_of: UBERON:0001771 ! pupil +intersection_of: part_of UBERON:0004549 ! right eye +relationship: part_of UBERON:0004549 ! right eye + +[Term] +id: UBERON:0010225 +name: thalamic complex +def: "A nuclear complex which in mammals consists of four parts, the hypothalamus, epithalamus, ventral thalamus, and dorsal thalamus[WP,modified]." [http://en.wikipedia.org/wiki/Thalamus#Thalamic_nuclei] +xref: EHDAA2:0004469 +xref: FMA:258745 +is_a: UBERON:0007245 ! nuclear complex of neuraxis +is_a: UBERON:0019269 ! gray matter of diencephalon + +[Term] +id: UBERON:0010227 +name: future cardiac atrium +def: "Multi-tissue structure that is part of the heart tube and will become the cardiac atrium." [ZFA:0001718] +synonym: "presumptive atrium heart tube" EXACT [ZFA:0001718] +synonym: "primordial atrium" EXACT [FMA:71005] +synonym: "primordial cardiac atrium" EXACT [FMA:71005] +xref: FMA:71005 +xref: TAO:0002228 +xref: ZFA:0001718 +is_a: UBERON:0006598 ! presumptive structure +relationship: has_potential_to_develop_into UBERON:0002081 ! cardiac atrium +relationship: part_of UBERON:0004141 {source="ZFA"} ! heart tube + +[Term] +id: UBERON:0010228 +name: ruminal fluid +def: "A portion of organism substance that is produced a rumen." [OBOL:automatic] +xref: BTO:0004789 +is_a: UBERON:0000463 ! organism substance +intersection_of: UBERON:0000463 ! organism substance +intersection_of: produced_by UBERON:0007365 ! rumen +relationship: part_of UBERON:0007365 ! rumen +relationship: produced_by UBERON:0007365 ! rumen + +[Term] +id: UBERON:0010229 +name: ruminant esophageal groove +def: "A muscular structure at the lower end of the esophagus that, when closed, forms a tube allowing milk to go directly into the abomasum. (This prevents milk from being fermented or soured by the ruminal microorganisms)." [http://www.extension.org/pages/16468/esophageal-groove] +comment: The formation of the esophageal groove is controlled by neural stimulation from suckling and milk proteins. This means milk, colostrum, and milk replacer bypass the rumen, while water enters it +synonym: "esophageal groove" BROAD SENSU [] +synonym: "reticular groove" BROAD SENSU [] +synonym: "ruminant reticular groove" EXACT [] +xref: BTO:0004789 +xref: http://www.snomedbrowser.com/Codes/Details/86149002 +is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0006846 ! surface groove +relationship: channel_for UBERON:0001913 ! milk +relationship: channels_from UBERON:0001043 ! esophagus +relationship: channels_into UBERON:0007358 ! abomasum +relationship: develops_from UBERON:0007361 ! ruminant reticulum +relationship: existence_ends_during UBERON:0000113 ! post-juvenile adult stage + +[Term] +id: UBERON:0010230 +name: eyeball of camera-type eye +def: "The core globe-shaped component of the camera-type eye." [UBERON:cjm] +subset: pheno_slim +synonym: "bulbus oculi" EXACT [] +synonym: "eye" RELATED INCONSISTENT [] +synonym: "eye globe" EXACT [VHOG:0001616] +synonym: "eyeball" EXACT [FMA:12513] +synonym: "globe" RELATED [HP:0100886, MIAA:0000283] +xref: FMA:12513 +xref: http://en.wikipedia.org/wiki/Globe_(human_eye) +xref: http://www.snomedbrowser.com/Codes/Details/244486005 +xref: MIAA:0000283 +xref: VHOG:0001616 +is_a: UBERON:0000020 ! sense organ +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: contributes_to_morphology_of UBERON:0000019 ! camera-type eye +relationship: fma_set_term FMA:264089 +relationship: part_of UBERON:0000019 {source="FMA"} ! camera-type eye + +[Term] +id: UBERON:0010231 +name: anatomical line between outer ears +synonym: "inter-otic line" RELATED [] +synonym: "inter-pinna line" RELATED [] +synonym: "otic line" RELATED [] +is_a: UBERON:0006800 ! anatomical line +intersection_of: UBERON:0006800 ! anatomical line +intersection_of: connects UBERON:0006616 ! right external ear +intersection_of: connects UBERON:0006617 ! left external ear +relationship: connects UBERON:0006616 ! right external ear +relationship: connects UBERON:0006617 ! left external ear + +[Term] +id: UBERON:0010232 +name: placodal ectoderm +xref: FMA:293966 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: has_potential_to_develop_into UBERON:0005085 ! ectodermal placode + +[Term] +id: UBERON:0010233 +name: stroma of thyroid gland +def: "The connective tissue that supports the lobules and follicles of the thyroid gland." [http://www.drugs.com/dict/stroma-of-thyroid-gland.html] +synonym: "thyroid gland stroma" EXACT [FMA:86304] +synonym: "thyroid stroma" EXACT [] +xref: FMA:86304 +xref: http://www.snomedbrowser.com/Codes/Details/157862000 +is_a: UBERON:0003891 ! stroma +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0003891 ! stroma +intersection_of: part_of UBERON:0002046 ! thyroid gland +relationship: part_of UBERON:0002046 ! thyroid gland + +[Term] +id: UBERON:0010234 +name: palatopharyngeus muscle +def: "The palatopharyngeus or palatopharyngeal or pharyngopalatinus muscle is a long, fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the palatopharyngeal arch." [http://en.wikipedia.org/wiki/Palatopharyngeus_muscle] +synonym: "musculus palatopharyngeus" RELATED LATIN [http://en.wikipedia.org/wiki/Palatopharyngeus_muscle] +synonym: "palatopharyngeal muscle" EXACT [] +synonym: "palatopharyngeus" EXACT [FMA:46666] +synonym: "pharyngopalatinus" RELATED [http://en.wikipedia.org/wiki/Palatopharyngeus_muscle] +synonym: "pharyngopalatinus muscle" EXACT [http://en.wikipedia.org/wiki/Palatopharyngeus_muscle] +xref: FMA:46666 +xref: http://www.snomedbrowser.com/Codes/Details/244796000 +xref: Palatopharyngeus:muscle +is_a: UBERON:0000933 {source="FMA"} ! pharyngeal muscle +is_a: UBERON:0003682 {source="Wikipedia"} ! palatal muscle +is_a: UBERON:0003831 ! respiratory system muscle +is_a: UBERON:0015212 ! lateral structure +relationship: has_muscle_insertion UBERON:0001738 {notes="Upper border of thyroid cartilage", source="dbpedia"} ! thyroid cartilage +relationship: has_muscle_origin UBERON:0003216 {notes="palatine aponeurosis and hard palate", source="dbpedia"} ! hard palate +relationship: in_lateral_side_of UBERON:0001042 {source="FMA-abduced-lr"} ! chordate pharynx +relationship: innervated_by UBERON:0001759 {notes="vagus nerve and cranial accessory nerve", source="dbpedia"} ! vagus nerve +relationship: innervated_by UBERON:0002019 {notes="vagus nerve and cranial accessory nerve", source="dbpedia"} ! accessory XI nerve +relationship: part_of UBERON:0001042 ! chordate pharynx + +[Term] +id: UBERON:0010235 +name: uvular muscle +def: "The musculus uvulae (azygos uvulae) is a muscle of the soft palate. It arises from the posterior nasal spine of the palatine bones and from the palatine aponeurosis. It descends to be inserted into the uvula and functions to move and shape it. It is innervated by the pharyngeal branch of the vagus nerve via the pharyngeal plexus[WP]." [http://en.wikipedia.org/wiki/Musculus_uvulae] +synonym: "azygos uvulae" RELATED [http://en.wikipedia.org/wiki/Musculus_uvulae] +synonym: "m. uvulae" RELATED [http://en.wikipedia.org/wiki/Musculus_uvulae] +synonym: "musculus uvulae" RELATED [http://en.wikipedia.org/wiki/Musculus_uvulae] +synonym: "musculus uvulae muscle" RELATED [http://en.wikipedia.org/wiki/Musculus_uvulae] +synonym: "uvulae muscle" RELATED [http://en.wikipedia.org/wiki/Musculus_uvulae] +synonym: "uvular muscle" EXACT [FMA:46733] +xref: FMA:46733 +xref: http://www.snomedbrowser.com/Codes/Details/244797009 +xref: Musculus:uvulae +is_a: UBERON:0003682 {source="Wikipedia"} ! palatal muscle +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: has_muscle_insertion UBERON:0001734 ! palatine uvula +relationship: has_muscle_insertion UBERON:0001734 ! palatine uvula +relationship: has_muscle_insertion UBERON:0014780 ! palatine aponeurosis +relationship: has_muscle_origin UBERON:0003216 {source="dbpedia"} ! hard palate +relationship: innervated_by UBERON:0000929 {source="dbpedia"} ! pharyngeal branch of vagus nerve + +[Term] +id: UBERON:0010238 +name: torus pylorus +def: "A fleshy protuberance at the pylorus of some species such as ruminants and pigs, that projects into the lumen of the pyloric canal" [http://medical-dictionary.thefreedictionary.com/torus+pyloricus] +synonym: "torus pyloricus" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/14214007 +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0001166 ! pylorus + +[Term] +id: UBERON:0010239 +name: spiral colon +def: "A variant of the ascending colon in ruminants and pigs." [http://en.wikipedia.org/wiki/Spiral_colon] +synonym: "coiled colon" EXACT [] +xref: http://linkedlifedata.com/resource/umls/id/C0227374 +xref: NCIT:C92438 +xref: Spiral:colon +xref: UMLS:C0227374 {source="ncithesaurus:Spiral_Colon"} +is_a: UBERON:0000168 ! proximal-distal subdivision of colon +relationship: continuous_with UBERON:0001157 ! transverse colon +relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut +relationship: present_in_taxon NCBITaxon:35497 +relationship: present_in_taxon NCBITaxon:9845 + +[Term] +id: UBERON:0010240 +name: zygomatic gland +def: "A salivary gland best developed in carnivores; located above the zygomatic arch and below the eye. Enlargement or mucocele of the gland causes exophthalmos" [http://medical-dictionary.thefreedictionary.com/zygomatic+gland] +synonym: "orbital gland" RELATED [] +synonym: "superior buccal gland" RELATED [] +synonym: "superior buccal salivary gland" RELATED [] +synonym: "upper molar gland" RELATED [] +xref: http://linkedlifedata.com/resource/umls/id/C2700338 +xref: NCIT:C77624 +xref: UMLS:C2700338 {source="ncithesaurus:Zygomatic_Gland"} +is_a: UBERON:0012102 ! buccal salivary gland + +[Term] +id: UBERON:0010241 +name: molar gland +comment: a variety of mammals have salivary glands variously terms upper molar/buccal gland - this class groups all of these +synonym: "molar salivary gland" EXACT [FMA:59794] +xref: FMA:59794 +xref: http://www.snomedbrowser.com/Codes/Details/59637006 +is_a: UBERON:0012102 ! buccal salivary gland + +[Term] +id: UBERON:0010242 +name: anterior buccal gland +def: "the racemose, mucous or serous glands in the submucous tissue of the cheeks" [ISBN:0-683-40008-8, MP:0009519] +subset: pheno_slim +synonym: "anterior buccal salivary gland" RELATED [] +xref: MA:0002700 +is_a: UBERON:0012102 ! buccal salivary gland +relationship: contributes_to_morphology_of UBERON:0003729 ! mouth mucosa + +[Term] +id: UBERON:0010243 +name: merocrine gland +def: "An exocrine gland whose secretions are excreted via exocytosis from secretory cells into an epithelial-walled duct or ducts and thence onto a bodily surface or into the lumen; the gland releases its product and no part of the gland is lost or damaged." [http://en.wikipedia.org/wiki/Merocrine, MGI:anna, MP:0013544] +subset: pheno_slim +xref: BTO:0002324 +xref: http://en.wikipedia.org/wiki/Merocrine +xref: MA:0003041 +is_a: UBERON:0002365 ! exocrine gland + +[Term] +id: UBERON:0010244 +name: choroid tapetum lucidum +def: "A tapetum lucidum that is part of the choroid. The choroidal tapetum lucidum lies immediately adjacent to the choriocapillaris and external to the retinal epithelium" [http://en.wikipedia.org/wiki/Tapetum_lucidum#Classification, http://www.ncbi.nlm.nih.gov/pubmed/14738502, https://orcid.org/0000-0002-6601-2165] +synonym: "choroidal tapetum lucidum" EXACT [] +synonym: "tapetum choroideae" EXACT [BTO:0001828] +xref: BTO:0001828 +xref: Classification +xref: http://www.snomedbrowser.com/Codes/Details/3034006 +is_a: UBERON:0004868 ! tapetum lucidum of camera-type eye +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0004868 ! tapetum lucidum of camera-type eye +intersection_of: part_of UBERON:0001776 ! optic choroid +relationship: adjacent_to UBERON:0000966 ! retina +relationship: part_of UBERON:0001776 ! optic choroid + +[Term] +id: UBERON:0010245 +name: retinal tapetum lucidum +def: "A tapetum lucidum that is part of the retina, within the cytoplasm of the retinal epithelium" [http://en.wikipedia.org/wiki/Tapetum_lucidum#Classification, http://www.ncbi.nlm.nih.gov/pubmed/14738502, https://orcid.org/0000-0002-6601-2165] +xref: Classification +is_a: UBERON:0004868 ! tapetum lucidum of camera-type eye +intersection_of: UBERON:0004868 ! tapetum lucidum of camera-type eye +intersection_of: part_of UBERON:0000966 ! retina +relationship: part_of UBERON:0000966 ! retina +relationship: present_in_taxon NCBITaxon:30559 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} +relationship: present_in_taxon NCBITaxon:32443 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} +relationship: present_in_taxon NCBITaxon:8493 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} +relationship: present_in_taxon NCBITaxon:9263 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} + +[Term] +id: UBERON:0010246 +name: choroidal guanine tapetum +def: "A choroid tapetum lucidum that is made of a palisade of cells containing stacks of flat hexagonal crystals of guanine" [http://en.wikipedia.org/wiki/Tapetum_lucidum#Classification, http://www.ncbi.nlm.nih.gov/pubmed/14738502, https://orcid.org/0000-0002-6601-2165] +xref: Classification +is_a: UBERON:0010244 ! choroid tapetum lucidum +relationship: present_in_taxon NCBITaxon:7778 +relationship: present_in_taxon NCBITaxon:7864 + +[Term] +id: UBERON:0010247 +name: choroidal tapetum cellulosum +def: "A choroid tapetum lucidum that consists of layers of cells containing organized, highly refractive crystals. These crystals are diverse in shape and makeup" [http://en.wikipedia.org/wiki/Tapetum_lucidum#Classification, http://www.ncbi.nlm.nih.gov/pubmed/14738502, https://orcid.org/0000-0002-6601-2165] +comment: The choroidal stroma adjacent to the tapetum lucidum contains numerous small blood vessels that penetrate the tapetal layer to form a single-layered capillary network, known as the choriocapillaris, on the surface of the tapetum. The tapetum cellulosum is thus interposed between the large branching vessels in the choroid and the single layer of the choriocapillaris beneath the retinal epithelium[PMID:14738502] +synonym: "choroid tapetum cellulosum" EXACT [] +xref: Classification +is_a: UBERON:0010244 ! choroid tapetum lucidum +relationship: present_in_taxon NCBITaxon:33554 {editor="cjm", notes="most carnivores", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} +relationship: present_in_taxon NCBITaxon:9721 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} +relationship: present_in_taxon NCBITaxon:9989 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502", taxon="spotted cavy"} + +[Term] +id: UBERON:0010248 +name: choroidal tapetum fibrosum +def: "A choroid tapetum lucidum that is an array of extracellular fibers." [http://en.wikipedia.org/wiki/Tapetum_lucidum#Classification, http://www.ncbi.nlm.nih.gov/pubmed/14738502, https://orcid.org/0000-0002-6601-2165] +synonym: "fibrous tapetum" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/14738502, NCBITaxon:9845] +xref: Classification +is_a: UBERON:0010244 ! choroid tapetum lucidum +relationship: present_in_taxon NCBITaxon:9788 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} +relationship: present_in_taxon NCBITaxon:9845 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} + +[Term] +id: UBERON:0010249 +name: posterior meningeal artery +def: "The posterior meningeal artery are small vessels which are branches of the ascending pharyngeal artery which supply the dura mater. It passes through the mastoid foramen before entering the cranium via the jugular foramen." [http://en.wikipedia.org/wiki/Posterior_meningeal_artery] +synonym: "arteria meningea posterior" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_meningeal_artery] +synonym: "meningeal branches of the ascending pharyngeal artery" RELATED [http://en.wikipedia.org/wiki/Posterior_meningeal_artery] +synonym: "posterior meningeal arteries" RELATED PLURAL [http://en.wikipedia.org/wiki/Posterior_meningeal_artery] +synonym: "terminal branch of ascending pharyngeal artery" EXACT [FMA:49503] +xref: FMA:49503 +xref: http://en.wikipedia.org/wiki/Posterior_meningeal_artery +xref: http://linkedlifedata.com/resource/umls/id/C0221310 +xref: NCIT:C33369 +xref: UMLS:C0221310 {source="ncithesaurus:Posterior_Meningeal_Artery"} +is_a: UBERON:0003474 ! meningeal artery +disjoint_from: UBERON:0010251 {source="lexical"} ! anterior meningeal artery + +[Term] +id: UBERON:0010250 +name: middle meningeal artery +def: "The middle meningeal artery is typically the third branch of the first part (retromandibular part) of the maxillary artery; one of the two terminal branches of the external carotid artery. After branching off the maxillary artery in the infratemporal fossa, it runs through the foramen spinosum to supply the dura mater and the calvaria. The middle meningeal artery is the largest of the three (paired) arteries which supply the meninges, the others being the anterior meningeal artery and the posterior meningeal artery. In approximately half of subjects it branches into an accessory meningeal artery. The middle meningeal artery runs beneath the pterion. It is vulnerable to injury at this point, where the skull is thin. Rupture of the artery may give rise to an epidural hematoma." [http://en.wikipedia.org/wiki/Middle_meningeal_artery] +synonym: "arteria meningea media" RELATED LATIN [http://en.wikipedia.org/wiki/Middle_meningeal_artery] +synonym: "arteria meningea media" RELATED [http://en.wikipedia.org/wiki/Middle_meningeal_artery] +xref: FMA:49711 +xref: http://en.wikipedia.org/wiki/Middle_meningeal_artery +xref: http://www.snomedbrowser.com/Codes/Details/278100005 +is_a: UBERON:0003474 ! meningeal artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: branching_part_of UBERON:0001616 {source="FMA"} ! maxillary artery +relationship: part_of UBERON:0001616 ! maxillary artery + +[Term] +id: UBERON:0010251 +name: anterior meningeal artery +def: "A meningeal branch to the dura mater arising from the anterior ethmoidal artery." [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery#Branches] +synonym: "a. ethmoidalis anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] +synonym: "anterior ethmoid arteries" RELATED [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] +synonym: "anterior ethmoid artery" RELATED [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] +synonym: "anterior meningeal arteries" RELATED [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] +synonym: "anterior meningeal artery" RELATED [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] +synonym: "anterior meningeal branch of anterior ethmoidal artery" EXACT [FMA:49993] +synonym: "arteria ethmoidalis anterior" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] +synonym: "ramus meningeus anterior (arteria ethmoidalis anterioris)" EXACT LATIN [FMA:49993, FMA:TA] +xref: Branches +xref: FMA:49993 +xref: http://linkedlifedata.com/resource/umls/id/C0226187 +xref: http://www.snomedbrowser.com/Codes/Details/369327009 +xref: NCIT:C32099 +xref: UMLS:C0226187 {source="ncithesaurus:Anterior_Meningeal_Artery"} +is_a: UBERON:0003474 ! meningeal artery +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: branching_part_of UBERON:0012318 {source="Wikipedia"} ! anterior ethmoidal artery +relationship: part_of UBERON:0012318 ! anterior ethmoidal artery + +[Term] +id: UBERON:0010252 +name: 1st arch mandibular mesenchyme from neural crest +def: "Mesenchyme that develops_from a neural crest and is part of a 1st arch mandibular mesenchyme." [OBOL:automatic] +xref: EHDAA2:0000037 +is_a: UBERON:0009584 ! 1st arch mandibular mesenchyme +is_a: UBERON:0010259 {source="inferred"} ! 1st arch mesenchyme from neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0002342 ! neural crest +intersection_of: part_of UBERON:0009584 ! 1st arch mandibular mesenchyme +relationship: develops_from UBERON:0007098 ! mandibular neural crest + +[Term] +id: UBERON:0010253 +name: 1st arch maxillary mesenchyme from neural crest +def: "Mesenchyme that develops_from a neural crest and is part of a 1st arch maxillary mesenchyme." [OBOL:automatic] +xref: EHDAA2:0000044 +is_a: UBERON:0010045 ! 1st arch maxillary mesenchyme +is_a: UBERON:0010259 ! 1st arch mesenchyme from neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0002342 ! neural crest +intersection_of: part_of UBERON:0010045 ! 1st arch maxillary mesenchyme + +[Term] +id: UBERON:0010254 +name: 2nd arch mesenchyme from neural crest +def: "Mesenchyme that develops_from a neural crest and is part of a 2nd arch mesenchyme." [OBOL:automatic] +synonym: "branchial arch 2 mesenchyme from neural crest" RELATED [] +synonym: "neural crest derived arch 2 mesenchyme" EXACT [] +synonym: "pharyngeal arch 2 mesenchyme from neural crest" EXACT [] +xref: EHDAA2:0000068 +xref: EMAPA:16281 +is_a: UBERON:0005689 ! 2nd arch mesenchyme +is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest +is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0002342 ! neural crest +intersection_of: part_of UBERON:0005689 ! 2nd arch mesenchyme +relationship: develops_from UBERON:0007099 ! hyoid neural crest + +[Term] +id: UBERON:0010255 +name: 3rd arch mesenchyme from neural crest +def: "Mesenchyme that develops_from a neural crest and is part of a 3rd arch mesenchyme." [OBOL:automatic] +synonym: "3rd pharyngeal arch mesenchyme derived from neural crest" EXACT [VHOG:0000571] +synonym: "branchial arch 3 mesenchyme from neural crest" RELATED [] +synonym: "mesenchyme derived from neural crest of mesenchyme of 3rd arch" EXACT [EMAPA:16404] +synonym: "neural crest derived arch 3 mesenchyme" EXACT [] +synonym: "pharyngeal arch 3 mesenchyme from neural crest" EXACT [] +xref: EHDAA2:0000083 +xref: EMAPA:16404 +xref: VHOG:0000571 +is_a: UBERON:0005690 ! 3rd arch mesenchyme +is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest +is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0002342 ! neural crest +intersection_of: part_of UBERON:0005690 ! 3rd arch mesenchyme + +[Term] +id: UBERON:0010256 +name: 4th arch mesenchyme from neural crest +def: "Mesenchyme that develops_from a neural crest and is part of a 4th arch mesenchyme." [OBOL:automatic] +synonym: "4th pharyngeal arch mesenchyme derived from neural crest" EXACT [VHOG:0000580] +synonym: "branchial arch 4 mesenchyme from neural crest" RELATED [] +synonym: "mesenchyme derived from neural crest of mesenchyme of 4th arch" EXACT [EMAPA:16772] +synonym: "neural crest derived arch 4 mesenchyme" EXACT [] +synonym: "pharyngeal arch 4 mesenchyme from neural crest" EXACT [] +xref: EHDAA2:0000098 +xref: EMAPA:16772 +xref: VHOG:0000580 +is_a: UBERON:0005691 ! 4th arch mesenchyme +is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest +is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0002342 ! neural crest +intersection_of: part_of UBERON:0005691 ! 4th arch mesenchyme + +[Term] +id: UBERON:0010257 +name: 6th arch mesenchyme from neural crest +def: "Mesenchyme that develops_from a neural crest and is part of a 6th arch mesenchyme." [OBOL:automatic] +synonym: "branchial arch 6 mesenchyme from neural crest" RELATED [] +synonym: "neural crest derived arch 6 mesenchyme" EXACT [] +synonym: "pharyngeal arch 6 mesenchyme from neural crest" EXACT [] +xref: EHDAA2:0004077 +is_a: UBERON:0010031 ! 6th arch mesenchyme +is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest +is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0002342 ! neural crest +intersection_of: part_of UBERON:0010031 ! 6th arch mesenchyme + +[Term] +id: UBERON:0010258 +name: mesenchyme from rhombencephalic neural crest +def: "Mesenchyme that develops_from a rhombencephalon neural crest." [OBOL:automatic] +xref: EHDAA2:0004423 +is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0003852 ! rhombencephalon neural crest +relationship: develops_from UBERON:0003852 ! rhombencephalon neural crest + +[Term] +id: UBERON:0010259 +name: 1st arch mesenchyme from neural crest +def: "Mesenchyme that develops_from a neural crest and is part of a 1st arch mesenchyme." [OBOL:automatic] +synonym: "branchial arch 1 mesenchyme from neural crest" RELATED [] +synonym: "mesenchyme derived from neural crest of mesenchyme of 1st arch" EXACT [EMAPA:16129] +synonym: "neural crest derived arch 1 mesenchyme" EXACT [] +synonym: "pharyngeal arch 1 mesenchyme from neural crest" EXACT [] +xref: EMAPA:16129 +is_a: UBERON:0010042 ! 1st arch mesenchyme +is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest +is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0002342 ! neural crest +intersection_of: part_of UBERON:0010042 ! 1st arch mesenchyme + +[Term] +id: UBERON:0010260 +name: umbilical blood vessel +def: "One of the three blood vessels, usually one large umbilical vein and two small umbilical arteries, buried within Wharton's jelly, that transport blood to and from the placenta, where exchange between the mother and fetus takes place; the umbilical vein carries oxygenated, nutrient-rich blood from the placenta to the fetus, and the umbilical arteries carry deoxygenated, nutrient-depleted blood from the fetus to the placenta." [MP:0003230] +subset: pheno_slim +synonym: "allantoic vessel" EXACT [Hymans:Hymans] +synonym: "umbilical cord blood vessel" EXACT [] +synonym: "umbilical cord blood vessels" RELATED PLURAL [] +synonym: "umbilical vasculature" RELATED [] +synonym: "umbilical vessel" EXACT [] +xref: EMAPA:36493 +xref: http://www.snomedbrowser.com/Codes/Details/408728001 +is_a: UBERON:0001981 ! blood vessel +relationship: located_in UBERON:0003422 ! mesenchyme of umbilical cord + +[Term] +id: UBERON:0010262 +name: operculum of brain +def: "The most posterior portion of the inferior frontal gyrus of the frontal lobe in the brain. In an axial plane, the Sylvian fissure extends from the operculum posteriorly to divide the frontal from the temporal lobe. Broca's area is a notable part of the operculum, which plays a key role in conversation or speech production, reading and writing. Its vascular supply comes from the M3 branches of the middle cerebral artery[WP]." [http://en.wikipedia.org/wiki/Operculum_(brain)] +subset: pheno_slim +synonym: "operculum" BROAD [HP:0100954] +xref: http://www.snomedbrowser.com/Codes/Details/362351003 +xref: Operculum:(brain) +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0016525 ! frontal lobe + +[Term] +id: UBERON:0010263 +name: obsolete embryoid body +def: "Embryoid bodies are structures resembling embryos, occurring in several types of germ cell tumors." [BTO:0001718, http://en.wikipedia.org/wiki/Embryoid_body] +comment: Obsoled, as does not cover naturally occurring entity +xref: Embryoid:body +is_obsolete: true +consider: BTO:0001718 + +[Term] +id: UBERON:0010264 +name: hepatopancreas +def: "An organ of the digestive tract of arthropods and molluscs. It provides the functions which in mammals are provided separately by the liver and pancreas, including the production of digestive enzymes, and absorption of digested food." [http://en.wikipedia.org/wiki/Hepatopancreas] +xref: BTO:0000597 +xref: http://en.wikipedia.org/wiki/Hepatopancreas +is_a: UBERON:0003408 ! gland of digestive tract +is_a: UBERON:0006925 {source="BTO"} ! digestive system gland +relationship: part_of UBERON:0001045 {source="BTO"} ! midgut +relationship: present_in_taxon NCBITaxon:6447 +relationship: present_in_taxon NCBITaxon:6657 + +[Term] +id: UBERON:0010265 +name: mollusc hepatopancreas +def: "." [http://en.wikipedia.org/wiki/Digestive_system_of_gastropods#Hepatopancreas] +xref: Hepatopancreas +is_a: UBERON:0010264 ! hepatopancreas + +[Term] +id: UBERON:0010266 +name: arthropod hepatopancreas +def: "Digestive gland of crustaceans with functions approximately analogous to liver and pancreas of vertebrates - enzyme secretion, food absorption and storage." [BTO:0000597] +synonym: "crustacean digestive gland" RELATED [] +synonym: "midgut gland" RELATED [BTO:0000597] +is_a: UBERON:0005057 ! immune organ +is_a: UBERON:0010264 ! hepatopancreas + +[Term] +id: UBERON:0010267 +name: obsolete inferior reticular formation +def: "." [GO:0021728] +is_obsolete: true + +[Term] +id: UBERON:0010268 +name: obsolete superior reticular formation +def: "." [GO:0021729] +is_obsolete: true + +[Term] +id: UBERON:0010269 +name: filum terminale internum +synonym: "internal part of filum terminale" EXACT [FMA:256524] +xref: FMA:256524 +xref: http://www.snomedbrowser.com/Codes/Details/315673007 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0005443 {source="FMA"} ! filum terminale + +[Term] +id: UBERON:0010270 +name: filum terminale externum +synonym: "external part of filum terminale" EXACT [FMA:256526] +xref: FMA:256526 +xref: http://www.snomedbrowser.com/Codes/Details/315573001 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0005443 {source="FMA"} ! filum terminale + +[Term] +id: UBERON:0010271 +name: musculus retractor bulbi +def: "Cranial nerve VI innervated; ventral and posterior to the eye." [AAO:0010122] +synonym: "M. retractor bulbi" EXACT [] +synonym: "retractor bulbi" EXACT [] +synonym: "retractor bulbi muscle" EXACT [] +xref: AAO:0010122 +is_a: UBERON:0001601 {source="cjm"} ! extra-ocular muscle +relationship: innervated_by UBERON:0001646 ! abducens nerve +relationship: present_in_taxon NCBITaxon:40674 + +[Term] +id: UBERON:0010272 +name: hyoid apparatus +def: "A group of bones comprised of hyoid body and two pairs of cornua (i.e. greater cornua and lesser cornua), and lies just below the tongue, above the thyroid cartilage" [http://www.biology-online.org/dictionary/Hyoid_apparatus] +synonym: "apparatus hyobranchialis" RELATED LATIN [] +synonym: "apparatus hyoideus" RELATED [http://www.biology-online.org/dictionary/Hyoid_apparatus] +synonym: "hyobranchial apparatus" RELATED [AAO:0000225] +synonym: "hyolingual system" RELATED [AAO:0000225] +xref: AAO:0000225 +xref: AAO:0000682 +xref: EMAPA:37600 {source="MA:th"} +xref: http://palaeos.com/vertebrates/bones/gill_arches/images/ReptileHyoids.gif +xref: http://www.snomedbrowser.com/Codes/Details/410035009 +xref: MA:0003037 +is_a: UBERON:0000075 ! subdivision of skeletal system +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0005884 {source="AAO"} ! hyoid arch skeleton + +[Term] +id: UBERON:0010273 +name: zone of hyoid bone +def: "A zone of bone organ that is part of a hyoid bone." [OBOL:automatic] +synonym: "hyoid bone zone" EXACT [FMA:59494] +xref: FMA:59494 +xref: http://www.snomedbrowser.com/Codes/Details/119534005 +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0005913 ! zone of bone organ +intersection_of: part_of UBERON:0001685 ! hyoid bone +relationship: part_of UBERON:0001685 ! hyoid bone + +[Term] +id: UBERON:0010276 +name: space in vertebral column +def: "Any anatomical space that is part of a vertebral column." [OBOL:automatic] +synonym: "vertebral column opening" EXACT [AAO:0000700] +synonym: "vertebral conduit" EXACT [] +xref: AAO:0000700 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: part_of UBERON:0001130 ! vertebral column +relationship: part_of UBERON:0001130 ! vertebral column + +[Term] +id: UBERON:0010277 +name: mesocardium +def: "The part of the embryonic mesentery which connects the embryonic heart with the body wall in front and the foregut behind." [http://medical-dictionary.thefreedictionary.com/mesocardium] +subset: pheno_slim +synonym: "cardiac mesentery" RELATED [EMAPA:16212] +xref: EMAPA:16212 +xref: MA:0000098 +is_a: UBERON:0002050 ! embryonic structure +relationship: develops_from UBERON:0004873 {source="EHDAA2"} ! splanchnopleure +relationship: part_of UBERON:0003282 ! mesentery of heart +relationship: surrounded_by UBERON:0001074 ! pericardial cavity + +[Term] +id: UBERON:0010279 +name: pericardial sinus +def: "There are two Pericardial sinuses: transverse and oblique. The cul-de-sac enclosed between the limbs of the inverted U of the venous mesocardium lies behind the left atrium and is known as the oblique sinus. . The passage between the venous and arterial mesocardiabi.e. , between the aorta and pulmonary artery in front and the superior vena cava behindbis termed the transverse sinus. Also, the sinus that forms in the pericardial cavity where the dorso-mesentary pericardium reside. Can be used to pass ligature during cardiac surgery." [http://en.wikipedia.org/wiki/Pericardial_sinus] +synonym: "oblique pericardial" RELATED [http://en.wikipedia.org/wiki/Pericardial_sinus] +synonym: "oblique pericardial sinus" RELATED [http://en.wikipedia.org/wiki/Pericardial_sinus] +synonym: "oblique sinus" RELATED [http://en.wikipedia.org/wiki/Pericardial_sinus] +synonym: "pericardial sinuses" RELATED [http://en.wikipedia.org/wiki/Pericardial_sinus] +synonym: "transverse pericardial" RELATED [http://en.wikipedia.org/wiki/Pericardial_sinus] +synonym: "transverse pericardial sinus" RELATED [http://en.wikipedia.org/wiki/Pericardial_sinus] +xref: http://www.snomedbrowser.com/Codes/Details/314273005 +xref: Pericardial:sinus +is_a: UBERON:0002553 ! anatomical cavity +relationship: part_of UBERON:0001074 {source="FMA-abduced"} ! pericardial cavity +relationship: part_of UBERON:0010277 {source="MA-abduced"} ! mesocardium + +[Term] +id: UBERON:0010283 +name: oblique pericardial sinus +def: "The cul-de-sac enclosed between the limbs of the inverted U of the venous mesocardium lies behind the left atrium.[WP,unvetted]." [http://en.wikipedia.org/wiki/Pericardial_sinus] +synonym: "oblique sinus of pericardial cavity" EXACT [FMA:77133] +xref: FMA:77133 +xref: Pericardial:sinus +is_a: UBERON:0010279 ! pericardial sinus + +[Term] +id: UBERON:0010284 +name: lacrimal punctum +def: "A minute orifice on the summit of the papillae lacrimales, which is the commencement point of the lacrimal canaliculi." [http://en.wikipedia.org/wiki/Lacrimal_punctum] +subset: pheno_slim +synonym: "lacrimal point" RELATED [http://en.wikipedia.org/wiki/Lacrimal_punctum] +synonym: "lacrimal puncta" RELATED PLURAL [http://en.wikipedia.org/wiki/Lacrimal_punctum] +synonym: "puncta lacrimalia" RELATED LATIN [http://en.wikipedia.org/wiki/Lacrimal_punctum] +xref: FMA:59365 +xref: http://www.snomedbrowser.com/Codes/Details/263344003 +xref: Lacrimal:punctum +is_a: UBERON:0000161 {source="FMA"} ! orifice +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001850 ! lacrimal drainage system + +[Term] +id: UBERON:0010285 +name: midbrain basal plate +def: "Portion of tissue that is dorsolateral to the floor plate and part of the midbrain." [ZFA:0000761] +subset: efo_slim +synonym: "basal plate midbrain" EXACT [TAO:0000761] +synonym: "basal plate midbrain region" EXACT [ZFA:0000761] +xref: DHBA:12322 +xref: EFO:0003567 +xref: EHDAA2:0004375 +xref: TAO:0000761 +xref: ZFA:0000761 +is_a: UBERON:0002020 {source="EHDAA2"} ! gray matter +relationship: part_of UBERON:0009581 {source="EHDAA2"} ! midbrain mantle layer +relationship: part_of UBERON:0010286 {source="ZFA"} ! midbrain neural tube + +[Term] +id: UBERON:0010286 +name: midbrain neural tube +def: "Portion of neural tube that gives rise to the midbrain." [ZFA:0007039] +xref: TAO:0007039 +xref: ZFA:0007039 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0003080 {source="ZFA"} ! anterior neural tube + +[Term] +id: UBERON:0010287 +name: motor root of facial nerve +synonym: "facial nerve motor root" EXACT [FMA:53419] +synonym: "motor component of the VIIth (facial) nerve" EXACT [] +synonym: "seventh cranial nerve motor root" EXACT [FMA:53419] +xref: DHBA:12863 +xref: FMA:53419 +xref: http://www.snomedbrowser.com/Codes/Details/280191009 +is_a: UBERON:0004674 {source="FMA"} ! facial nerve root +relationship: develops_from UBERON:0005239 {source="Wikipedia"} ! basal plate metencephalon + +[Term] +id: UBERON:0010288 +name: obsolete future medulla oblongata +is_obsolete: true +consider: UBERON:0001896 + +[Term] +id: UBERON:0010289 +name: scleral cartilage +def: "Circular cartilage ringing the posterior portion of the eye in the sclera. Supports the eye." [http://www.fishbase.org/glossary/Glossary.php?q=scleral+cartilage] +synonym: "scleral cartilage element" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/17051547] +synonym: "scleral cartilaginous cup" NARROW SENSU [http://www.ncbi.nlm.nih.gov/pubmed/17051547] +synonym: "sclerotic cartilage" EXACT [ZFA:0001509] +synonym: "sclerotic cartilages" RELATED PLURAL [ZFA:0001509] +xref: TAO:0001509 +xref: ZFA:0001509 +is_a: UBERON:0003932 {source="ZFA"} ! cartilage element of chondrocranium +is_a: UBERON:0010296 ! scleral skeletal element +relationship: part_of UBERON:0001773 {source="cjm"} ! sclera + +[Term] +id: UBERON:0010290 +name: scleral ossicle +def: "A bony plate around the eyes, are situated at the corneal-scleral limbus. They do not articulate with other elements of the skull. Typically, the scleral ossicles overlap the rim of a cup of scleral cartilage that supports the eyeball. Situated near the equator of the eye and may slightly overlap the rim of scleral cartilage." [http://www.ncbi.nlm.nih.gov/pubmed/17051547] +synonym: "scleral ossicle" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/17051547] +synonym: "sclerotic bone" EXACT [ZFA:0001411] +synonym: "sclerotic ossicle" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/45632000 +is_a: UBERON:0010296 ! scleral skeletal element +relationship: part_of UBERON:0001697 {source="ZFA"} ! orbit of skull + +[Term] +id: UBERON:0010291 +name: layer of sclera +def: "." [http://en.wikipedia.org/wiki/Sclera#Histology] +xref: Histology +is_a: UBERON:0004923 ! organ component layer +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0001773 {source="cjm"} ! sclera + +[Term] +id: UBERON:0010292 +name: episcleral layer of eyeball +def: "The episclera is the outermost layer of the sclera. It is composed of loose, fibrous, elastic tissue and attaches to Tenon's capsule. A vascular plexus is found between the conjunctiva and the sclera consisting of two layers of vessels, the superficial episcleral vessels and the deep episcleral vessels." [http://en.wikipedia.org/wiki/Episcleral_layer] +synonym: "episclera" EXACT [FMA:58362] +synonym: "episcleral layer" EXACT [FMA:58362] +synonym: "lamina episcleralis" EXACT LATIN [http://en.wikipedia.org/wiki/Episcleral_layer] +xref: Episcleral:layer +xref: FMA:58362 +xref: http://linkedlifedata.com/resource/umls/id/C0229109 +xref: http://www.snomedbrowser.com/Codes/Details/368850003 +xref: NCIT:C12989 +xref: UMLS:C0229109 {source="ncithesaurus:Episclera"} +is_a: UBERON:0010291 {source="Wikipedia"} ! layer of sclera + +[Term] +id: UBERON:0010293 +name: suprachoroid lamina +def: "On the external surface of the optic choroid is a thin membrane, the suprachoroid lamina, composed of delicate non-vascular lamellae-each lamella consisting of a network of fine elastic fibers among which are branched pigment cells." [http://en.wikipedia.org/wiki/Suprachoroid_lamina] +synonym: "fusca sclerae" RELATED [http://en.wikipedia.org/wiki/Suprachoroid_lamina] +synonym: "lamina fusca of sclera" RELATED [FMA:58368] +synonym: "lamina fusca sclerae" RELATED [http://en.wikipedia.org/wiki/Suprachoroid_lamina] +synonym: "lamina fusca sclerae" RELATED LATIN [FMA:TA] +synonym: "lamina fusca scletae" RELATED [http://en.wikipedia.org/wiki/Suprachoroid_lamina] +synonym: "lamina suprachorioidea" EXACT LATIN [http://en.wikipedia.org/wiki/Suprachoroid_lamina] +synonym: "lamina suprachorioidea" RELATED LATIN [http://en.wikipedia.org/wiki/Suprachoroid_lamina] +synonym: "lamina suprachoroidea" EXACT LATIN [http://en.wikipedia.org/wiki/Suprachoroid_lamina] +synonym: "suprachoroid lamina of sclera" RELATED [FMA:58368] +xref: FMA:58368 +xref: http://www.snomedbrowser.com/Codes/Details/280607003 +xref: Suprachoroid:lamina +is_a: UBERON:0004923 ! organ component layer +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0013399 ! blood vessel layer of choroid + +[Term] +id: UBERON:0010294 +name: scleral endothelium +def: "An endothelium that is part of a sclera." [OBOL:automatic] +is_a: UBERON:0001986 ! endothelium +is_a: UBERON:0010291 {source="Wikipedia"} ! layer of sclera +is_a: UBERON:0015808 ! eye epithelium +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0001773 ! sclera + +[Term] +id: UBERON:0010295 +name: substantia propria of sclera +def: "A stroma that is part of a sclera." [OBOL:automatic] +synonym: "scleral stroma" EXACT [FMA:58365] +synonym: "stroma of sclera" EXACT [FMA:58365] +synonym: "subsantia propria" BROAD [] +synonym: "subsantia propria sclerae" EXACT [FMA:58365] +synonym: "substantia propria sclerae" EXACT LATIN [FMA:58365, FMA:TA] +xref: FMA:58365 +xref: http://linkedlifedata.com/resource/umls/id/C1704397 +xref: http://www.snomedbrowser.com/Codes/Details/368851004 +xref: NCIT:C33652 +xref: UMLS:C1704397 {source="ncithesaurus:Substantia_Propria"} +is_a: UBERON:0003891 ! stroma +is_a: UBERON:0010291 {source="Wikipedia"} ! layer of sclera +intersection_of: UBERON:0003891 ! stroma +intersection_of: part_of UBERON:0001773 ! sclera + +[Term] +id: UBERON:0010296 +name: scleral skeletal element +is_a: UBERON:0010321 ! skeletal element of eye region +relationship: part_of UBERON:0000019 ! camera-type eye + +[Term] +id: UBERON:0010297 +name: endochondral scleral ossicle +synonym: "sclerotic bones" RELATED PLURAL [ZFA:0001411] +xref: TAO:0001411 +xref: ZFA:0001411 +is_a: UBERON:0002513 {source="ZFA"} ! endochondral bone +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0010290 ! scleral ossicle +relationship: develops_from UBERON:0010289 {source="ZFA"} ! scleral cartilage +relationship: part_of UBERON:0002241 {source="ZFA"} ! chondrocranium + +[Term] +id: UBERON:0010298 +name: intramembranous scleral ossicle +comment: are of dermal (neural crest) origin, develop intramembranously within the scleral mesenchyme, and are induced to form by overlying (transient) epithelial scleral papillae (Nelson, 1942; Murray, 1943; Fyfe and Hall, 1981, 1983; Hall, 1981, 2005; Pinto and Hall, 1991) +is_a: UBERON:0002514 {source="http://www.ncbi.nlm.nih.gov/pubmed/11237469"} ! intramembranous bone +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0010290 ! scleral ossicle +relationship: developmentally_induced_by UBERON:0010300 {source="http://www.ncbi.nlm.nih.gov/pubmed/16496288"} ! epithelial scleral papilla layer +relationship: develops_in UBERON:0010299 ! scleral mesenchyme + +[Term] +id: UBERON:0010299 +name: scleral mesenchyme +def: "Mesenchyme surrounding the developing optic cup which develops into the sclera." [http://www.ncbi.nlm.nih.gov/pubmed/16496288, https://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0003104 ! mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: has_potential_to_develop_into UBERON:0001773 ! sclera +relationship: has_potential_to_develop_into UBERON:0001773 ! sclera +relationship: surrounds UBERON:0003072 ! optic cup + +[Term] +id: UBERON:0010300 +name: epithelial scleral papilla layer +synonym: "scleral papillae" EXACT [] +is_a: UBERON:0000483 ! epithelium +relationship: develops_in UBERON:0010299 ! scleral mesenchyme + +[Term] +id: UBERON:0010302 +name: amnioserosa +def: "A single extraembryonic epithelium, which closes the germband dorsally." [https://doi.org/10.1073/pnas.0709145105] +subset: efo_slim +synonym: "amnion-serosa" RELATED [BTO:0004800] +xref: BTO:0004800 +xref: EFO:0000250 +xref: FBbt:00000095 +is_a: UBERON:0010303 {source="https://doi.org/10.1073/pnas.0709145105"} ! extraembryonic epithelium + +[Term] +id: UBERON:0010303 +name: extraembryonic epithelium +def: "An epithelium that is part of a extraembryonic structure." [OBOL:automatic] +synonym: "extra-embryonic epithelium" EXACT [] +is_a: UBERON:0000483 ! epithelium +is_a: UBERON:0005292 ! extraembryonic tissue +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000478 ! extraembryonic structure +relationship: part_of UBERON:0000478 ! extraembryonic structure + +[Term] +id: UBERON:0010304 +name: non-keratinized stratified squamous epithelium +def: "Stratified squamous epithelium is a stratified squamous epithelium, the cells of which synthesizes but does not accumulate keratin. Examples: epithelium of vagina, epithelium of wall of esophagus." [FMA:45569, http://en.wikipedia.org/wiki/Stratified_squamous_epithelium#Nonkeratinized] +synonym: "epithelium stratificatum squamosum noncornificatum" EXACT [FMA:45569] +synonym: "nonkeratinizing stratified squamous epithelium" EXACT [FMA:45569] +synonym: "stratified squamous non-keratinized epithelium" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "stratified squamous nonkeratinizing epithelium" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: FMA:45569 +xref: Nonkeratinized +is_a: UBERON:0006915 {source="FMA"} ! stratified squamous epithelium +disjoint_from: UBERON:0012329 ! keratinized stratified squamous epithelium + +[Term] +id: UBERON:0010305 +name: subdivision of conjunctiva +def: "One of the three major regions of the conjunctiva." [http://en.wikipedia.org/wiki/Conjunctiva#Gross_anatomy] +subset: grouping_class +synonym: "conjunctiva region" EXACT [] +synonym: "region of conjunctiva" EXACT [FMA:59023] +xref: FMA:59023 +xref: Gross_anatomy +xref: http://www.snomedbrowser.com/Codes/Details/29445007 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000064 ! organ part +intersection_of: subdivision_of UBERON:0001811 ! conjunctiva +relationship: part_of UBERON:0001811 ! conjunctiva +relationship: subdivision_of UBERON:0001811 ! conjunctiva + +[Term] +id: UBERON:0010306 +name: bulbar conjunctiva +def: "The conjunctiva covering the anterior surface of the sclera and the surface epithelium of the cornea." [MP:0013402] +comment: covers the eyeball, over the sclera. This region of the conjunctiva is tightly bound to the underlying sclera by Tenon's capsule and moves with the eyeball movements. +subset: pheno_slim +synonym: "ocular conjunctiva" EXACT [http://en.wikipedia.org/wiki/Conjunctiva] +xref: FMA:59024 +xref: http://linkedlifedata.com/resource/umls/id/C0229275 +xref: http://www.snomedbrowser.com/Codes/Details/264509009 +xref: NCIT:C12902 +xref: UMLS:C0229275 {source="ncithesaurus:Bulbar_Conjunctiva"} +is_a: UBERON:0010305 {source="FMA"} ! subdivision of conjunctiva +relationship: adjacent_to UBERON:0001772 ! corneal epithelium +relationship: adjacent_to UBERON:0001773 ! sclera + +[Term] +id: UBERON:0010307 +name: conjunctival fornix +def: "The space formed by the junction of the bulbar and palpebral portions of the conjunctiva, that of the upper lid being the superior conjunctival fornix (fornix conjunctivae superior) and that of the lower lid, the inferior conjunctival fornix (fornix conjunctivae inferior); the fornix is loose and flexible, allowing the free movement of the lids and eyeball." [MGI:anna] +subset: pheno_slim +synonym: "conjunctiva fornix" EXACT [MGI:anna] +synonym: "forniceal conjunctiva" EXACT [MGI:anna] +synonym: "fornix conjunctiva" EXACT LATIN [http://en.wikipedia.org/wiki/Conjunctiva] +xref: EMAPA:37834 {source="MA:th"} +xref: FMA:59016 +xref: http://www.snomedbrowser.com/Codes/Details/276831007 +is_a: UBERON:0010305 {source="FMA"} ! subdivision of conjunctiva + +[Term] +id: UBERON:0010308 +name: os opticus +def: "Scleral element located at the posterior pole of the scleral cartilage surrounding the foramen through which the optic nerve fibers pass. the internal architecture of this bone reveals a cancellous marrow cavity with fatty tissue." [http://www.ncbi.nlm.nih.gov/pubmed/16496288] +synonym: "Gemminger's ossicle" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/16496288] +synonym: "os nervi optici" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/16496288] +is_a: UBERON:0010298 ! intramembranous scleral ossicle + +[Term] +id: UBERON:0010309 +name: palpebral bone +def: "An ossified element investing the upper eyelid." [http://en.wikipedia.org/wiki/Palpebral_(bone), http://www.ncbi.nlm.nih.gov/pubmed/16496288] +synonym: "palpebral" BROAD [] +xref: Palpebral:(bone) +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0010321 ! skeletal element of eye region +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0001712 ! upper eyelid +relationship: part_of UBERON:0001712 ! upper eyelid + +[Term] +id: UBERON:0010310 +name: nictitating membrane lamina +def: "thin cartilage element that stiffens the nictitating membrane." [http://www.ncbi.nlm.nih.gov/pubmed/16496288] +comment: Morphology notes: Generally, the cartilage consists of a long narrow appendix which is followed by a variable crossbar[PMID:11325064] +synonym: "cartilago intercipiens" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/16496288] +synonym: "nictitating membrane cartilage" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/11325064] +is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010321 ! skeletal element of eye region +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0010207 ! nictitating membrane +relationship: part_of UBERON:0010207 ! nictitating membrane +relationship: present_in_taxon NCBITaxon:40674 + +[Term] +id: UBERON:0010311 +name: scleral sesamoid bone +def: "A sesamoid bone that lies adjacent to the tendon of one of the muscles responsible for adducting the nictitating membrane (the pyramidal nictitating muscle)" [http://www.ncbi.nlm.nih.gov/pubmed/16496288] +synonym: "scleral sesamoid" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/16496288] +synonym: "scleral sesamoid element" EXACT [] +synonym: "sesamoideum esclerae" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/16496288] +is_a: UBERON:0001479 ! sesamoid bone +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0010290 ! scleral ossicle + +[Term] +id: UBERON:0010312 +name: immature eye +def: "Developing anatomical structure that develops into the eyeball and associated structures." [ZFA:0001678] +synonym: "future eye" EXACT [] +xref: TAO:0002201 +xref: ZFA:0001678 +is_a: UBERON:0005423 ! developing anatomical structure +intersection_of: UBERON:0005423 ! developing anatomical structure +intersection_of: has_developmental_contribution_from UBERON:0003071 ! eye primordium +relationship: develops_from UBERON:0003071 {evidence="definitional"} ! eye primordium +relationship: has_developmental_contribution_from UBERON:0003071 ! eye primordium + +[Term] +id: UBERON:0010313 +name: neural crest-derived structure +def: "An anatomical structure that develops from the neural crest." [https://orcid.org/0000-0002-6601-2165] +subset: grouping_class +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000061 ! anatomical structure +intersection_of: develops_from UBERON:0002342 ! neural crest +relationship: develops_from UBERON:0002342 ! neural crest + +[Term] +id: UBERON:0010314 +name: structure with developmental contribution from neural crest +def: "An anatomical structure that has some part that develops from the neural crest." [https://orcid.org/0000-0002-6601-2165] +subset: grouping_class +is_a: UBERON:0000061 ! anatomical structure +intersection_of: UBERON:0000061 ! anatomical structure +intersection_of: has_developmental_contribution_from UBERON:0002342 ! neural crest +relationship: has_developmental_contribution_from UBERON:0002342 ! neural crest + +[Term] +id: UBERON:0010316 +name: germ layer / neural crest +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: develops_from UBERON:0002532 ! epiblast (generic) + +[Term] +id: UBERON:0010317 +name: obsolete germ layer / neural crest derived structure +comment: Grouping term for query purposes +is_obsolete: true +consider: UBERON:0000923 +consider: UBERON:0010313 + +[Term] +id: UBERON:0010321 +name: skeletal element of eye region +def: "A skeletal element that is part of a orbital region." [OBOL:automatic] +synonym: "eye skeleton" RELATED [] +synonym: "ocular skeleton" RELATED [] +synonym: "skeletal element of orbital region" RELATED [] +is_a: UBERON:0004765 ! skeletal element +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0004765 ! skeletal element +intersection_of: part_of UBERON:0004088 ! orbital region +relationship: part_of UBERON:0004088 ! orbital region +relationship: part_of UBERON:0011156 ! facial skeleton + +[Term] +id: UBERON:0010323 +name: cranial skeletal system +def: "Skeletal subdivision of the head including skull (cranium plus mandible), pharyngeal and/or hyoid apparatus." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000049] +synonym: "cranial skeleton" NARROW [] +synonym: "cranium" RELATED INCONSISTENT [ZFA:0000737] +synonym: "osteocranium" NARROW [] +xref: AAO:0000109 +xref: AAO:0000971 +xref: AAO:0010185 +xref: TAO:0000737 +xref: VSAO:0000049 +xref: XAO:0003075 +xref: ZFA:0000737 +is_a: UBERON:0000075 ! subdivision of skeletal system +relationship: part_of UBERON:0011137 ! axial skeletal system + +[Term] +id: UBERON:0010324 +name: obsolete craniofacial region +xref: VSAO:0000083 +is_obsolete: true +consider: UBERON:0001456 + +[Term] +id: UBERON:0010325 +name: obsolete craniofacial skeleton +def: "Cranial skeleton derived from neural crest cells." [VSAO:0000082] +synonym: "Cranio-facial skeleton" EXACT [VSAO:curator] +xref: VSAO:0000082 +is_obsolete: true +consider: UBERON:0011156 + +[Term] +id: UBERON:0010326 +name: optic pedicel +def: "permanent cartilage structure projecting from the site of origin of the recti muscles. Supports eyeball and aids rotation." [http://www.ncbi.nlm.nih.gov/pubmed/16496288, ISBN:071676959X] +synonym: "eye stalk" RELATED [] +is_a: UBERON:0003932 ! cartilage element of chondrocranium +is_a: UBERON:0010321 ! skeletal element of eye region + +[Term] +id: UBERON:0010327 +name: obsolete early digestive tract associated mesenchyme +is_obsolete: true + +[Term] +id: UBERON:0010328 +name: limb bud mesenchyme +def: "Mesenchyme that is part of a limb bud." [OBOL:automatic] +is_a: UBERON:0010329 ! paired limb/fin bud mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0004347 ! limb bud +relationship: part_of UBERON:0004347 ! limb bud + +[Term] +id: UBERON:0010329 +name: paired limb/fin bud mesenchyme +def: "Mesenchyme that is part of a limb/fin bud." [OBOL:automatic] +is_a: UBERON:0010377 ! mesenchyme from somatopleure +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0004357 ! paired limb/fin bud +relationship: part_of UBERON:0004357 ! paired limb/fin bud + +[Term] +id: UBERON:0010330 +name: eyelid mesenchyme +def: "Mesenchyme that is part of a developing eyelid." [OBOL:automatic] +xref: EMAPA:32759 +is_a: UBERON:0003314 ! eye mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001711 ! eyelid +relationship: part_of UBERON:0001711 ! eyelid + +[Term] +id: UBERON:0010332 +name: epithelium of handplate +def: "An epithelium that is part of a handplate." [OBOL:automatic] +synonym: "handplate epithelium" EXACT [EHDAA2:0000730] +xref: EHDAA2:0000730 +xref: EMAPA:32630 +is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0006875 ! embryonic handplate +relationship: develops_from UBERON:0003372 {source="EHDAA2"} ! pectoral appendage bud ectoderm +relationship: part_of UBERON:0006875 ! embryonic handplate + +[Term] +id: UBERON:0010333 +name: extraembryonic membrane mesenchyme +def: "Mesenchyme that is part of a extraembryonic membrane." [OBOL:automatic] +is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005292 ! extraembryonic tissue +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0005631 ! extraembryonic membrane +relationship: develops_from UBERON:0005728 {source="EHDAA2-abduced"} ! extraembryonic mesoderm +relationship: part_of UBERON:0005631 ! extraembryonic membrane + +[Term] +id: UBERON:0010334 +name: maxillary process mesenchyme from neural crest +def: "Mesenchyme that develops_from a neural crest and is part of a maxillary process mesenchyme." [OBOL:automatic] +xref: EHDAA2:0004601 +is_a: UBERON:0009526 ! maxillary process mesenchyme +is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0002342 ! neural crest +intersection_of: part_of UBERON:0009526 ! maxillary process mesenchyme +relationship: develops_from UBERON:0010253 {source="EHDAA2"} ! 1st arch maxillary mesenchyme from neural crest + +[Term] +id: UBERON:0010335 +name: maxillary process mesenchyme from head mesenchyme +def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a maxillary process mesenchyme." [OBOL:automatic] +xref: EHDAA2:0004602 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0009526 ! maxillary process mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0006904 ! head mesenchyme from mesoderm +intersection_of: part_of UBERON:0009526 ! maxillary process mesenchyme +relationship: develops_from UBERON:0010338 {source="EHDAA2"} ! 1st arch maxillary mesenchyme from head mesenchyme + +[Term] +id: UBERON:0010336 +name: mandibular process mesenchyme from neural crest +def: "Mesenchyme that develops_from a neural crest and is part of a mandibular process mesenchyme." [OBOL:automatic] +xref: EHDAA2:0004603 +is_a: UBERON:0006905 ! mandibular process mesenchyme +is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0002342 ! neural crest +intersection_of: part_of UBERON:0006905 ! mandibular process mesenchyme +relationship: develops_from UBERON:0010252 {source="EHDAA2"} ! 1st arch mandibular mesenchyme from neural crest + +[Term] +id: UBERON:0010337 +name: mandibular process mesenchyme from head mesenchyme +def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a mandibular process mesenchyme." [OBOL:automatic] +xref: EHDAA2:0004604 +is_a: UBERON:0006904 ! head mesenchyme from mesoderm +is_a: UBERON:0006905 ! mandibular process mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0006904 ! head mesenchyme from mesoderm +intersection_of: part_of UBERON:0006905 ! mandibular process mesenchyme +relationship: develops_from UBERON:0010339 {source="EHDAA2"} ! 1st arch mandibular mesenchyme from head mesenchyme + +[Term] +id: UBERON:0010338 +name: 1st arch maxillary mesenchyme from head mesenchyme +def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 1st arch maxillary mesenchyme." [OBOL:automatic] +xref: EHDAA2:0000043 +is_a: UBERON:0010045 ! 1st arch maxillary mesenchyme +is_a: UBERON:0010341 ! 1st arch mesenchyme from head mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0006904 ! head mesenchyme from mesoderm +intersection_of: part_of UBERON:0010045 ! 1st arch maxillary mesenchyme + +[Term] +id: UBERON:0010339 +name: 1st arch mandibular mesenchyme from head mesenchyme +def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 1st arch mandibular mesenchyme." [OBOL:automatic] +xref: EHDAA2:0000036 +is_a: UBERON:0009584 ! 1st arch mandibular mesenchyme +is_a: UBERON:0010341 ! 1st arch mesenchyme from head mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0006904 ! head mesenchyme from mesoderm +intersection_of: part_of UBERON:0009584 ! 1st arch mandibular mesenchyme + +[Term] +id: UBERON:0010341 +name: 1st arch mesenchyme from head mesenchyme +def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 1st arch mesenchyme." [OBOL:automatic] +synonym: "mesenchyme derived from head mesoderm of mesenchyme of 1st arch" EXACT [EMAPA:16130] +xref: EMAPA:16130 +is_a: UBERON:0006904 ! head mesenchyme from mesoderm +is_a: UBERON:0010042 ! 1st arch mesenchyme +is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0006904 ! head mesenchyme from mesoderm +intersection_of: part_of UBERON:0010042 ! 1st arch mesenchyme + +[Term] +id: UBERON:0010343 +name: 2nd arch mesenchyme from head mesenchyme +def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 2nd arch mesenchyme." [OBOL:automatic] +synonym: "branchial arch 2 mesenchyme from head mesenchyme" RELATED [] +synonym: "head mesenchyme derived arch 2 mesenchyme" EXACT [] +synonym: "mesenchyme derived from head mesoderm of mesenchyme of 2nd arch" EXACT [EMAPA:16280] +synonym: "pharyngeal arch 2 mesenchyme from head mesenchyme" EXACT [] +xref: EHDAA2:0000067 +xref: EMAPA:16280 +is_a: UBERON:0005689 ! 2nd arch mesenchyme +is_a: UBERON:0006904 ! head mesenchyme from mesoderm +is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0006904 ! head mesenchyme from mesoderm +intersection_of: part_of UBERON:0005689 ! 2nd arch mesenchyme + +[Term] +id: UBERON:0010344 +name: 3rd arch mesenchyme from head mesenchyme +def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 3rd arch mesenchyme." [OBOL:automatic] +synonym: "branchial arch 3 mesenchyme from head mesenchyme" RELATED [] +synonym: "head mesenchyme derived arch 3 mesenchyme" EXACT [] +synonym: "mesenchyme derived from head mesoderm of mesenchyme of 3rd arch" EXACT [EMAPA:16403] +synonym: "pharyngeal arch 3 mesenchyme from head mesenchyme" EXACT [] +xref: EHDAA2:0000082 +xref: EMAPA:16403 +is_a: UBERON:0005690 ! 3rd arch mesenchyme +is_a: UBERON:0006904 ! head mesenchyme from mesoderm +is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0006904 ! head mesenchyme from mesoderm +intersection_of: part_of UBERON:0005690 ! 3rd arch mesenchyme + +[Term] +id: UBERON:0010345 +name: 4th arch mesenchyme from head mesenchyme +def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 4th arch mesenchyme." [OBOL:automatic] +synonym: "branchial arch 4 mesenchyme from head mesenchyme" RELATED [] +synonym: "head mesenchyme derived arch 4 mesenchyme" EXACT [] +synonym: "mesenchyme derived from head mesoderm of mesenchyme of 4th arch" EXACT [EMAPA:16771] +synonym: "pharyngeal arch 4 mesenchyme from head mesenchyme" EXACT [] +xref: EHDAA2:0000097 +xref: EMAPA:16771 +is_a: UBERON:0005691 ! 4th arch mesenchyme +is_a: UBERON:0006904 ! head mesenchyme from mesoderm +is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0006904 ! head mesenchyme from mesoderm +intersection_of: part_of UBERON:0005691 ! 4th arch mesenchyme + +[Term] +id: UBERON:0010347 +name: 6th arch mesenchyme from head mesenchyme +def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 6th arch mesenchyme." [OBOL:automatic] +synonym: "branchial arch 6 mesenchyme from head mesenchyme" RELATED [] +synonym: "head mesenchyme derived arch 6 mesenchyme" EXACT [] +synonym: "pharyngeal arch 6 mesenchyme from head mesenchyme" EXACT [] +xref: EHDAA2:0004078 +is_a: UBERON:0006904 ! head mesenchyme from mesoderm +is_a: UBERON:0010031 ! 6th arch mesenchyme +is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0006904 ! head mesenchyme from mesoderm +intersection_of: part_of UBERON:0010031 ! 6th arch mesenchyme + +[Term] +id: UBERON:0010348 +name: hyoid pre-muscle mass +synonym: "hyoid muscle plate" RELATED [] +xref: EHDAA2:0000795 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0010343 {source="EHDAA2"} ! 2nd arch mesenchyme from head mesenchyme + +[Term] +id: UBERON:0010349 +name: otic capsule pre-cartilage condensation +def: "A otic capsule endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +synonym: "otic capsule anlage" EXACT [] +xref: EHDAA2:0000833 +is_a: UBERON:0004637 ! otic capsule +intersection_of: UBERON:0004637 ! otic capsule +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010354 +name: Reichert's cartilage pre-cartilage condensation +synonym: "future Reichert's cartilage" EXACT [] +synonym: "hyoid cartilage pre-cartilage condensation" EXACT [EMAPA:17351] +xref: EMAPA:17351 +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest +relationship: develops_from UBERON:0010254 {source="https://doi.org/10.1111/j.1469-7580.2005.00441.x", source="EHDAA2"} ! 2nd arch mesenchyme from neural crest + +[Term] +id: UBERON:0010355 +name: ossification center +def: "The first step in ossification of the cartilage is that the cartilage cells, at the point where ossification is commencing and which is termed a ossification center, enlarge and arrange themselves in rows. The matrix in which they are imbedded increases in quantity, so that the cells become further separated from each other. A deposit of calcareous material now takes place in this matrix, between the rows of cells, so that they become separated from each other by longitudinal columns of calcified matrix, presenting a granular and opaque appearance. Here and there the matrix between two cells of the same row also becomes calcified, and transverse bars of calcified substance stretch across from one calcareous column to another. Thus there are longitudinal groups of the cartilage cells enclosed in oblong cavities, the walls of which are formed of calcified matrix which cuts off all nutrition from the cells; the cells, in consequence, atrophy, leaving spaces called the primary areolC&." [http://en.wikipedia.org/wiki/Ossification_center] +subset: pheno_slim +synonym: "center of ossification" RELATED [http://en.wikipedia.org/wiki/Ossification_center] +synonym: "centrum ossificationis" EXACT LATIN [FMA:TA] +synonym: "centrum ossificationis" RELATED LATIN [http://en.wikipedia.org/wiki/Ossification_center] +synonym: "ossification centre" EXACT [FMA:75436] +xref: FMA:75436 +xref: Ossification:center +is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ + +[Term] +id: UBERON:0010356 +name: primary ossification center +def: "A primary ossification center is the first area of a bone to start ossifying. It usually appears during prenatal development in the central part of each developing bone. In long bones the primary centers occur in the diaphysis/shaft and in irregular bones the primary centers occur usually in the body of the bone. Most bones have only one primary center (e.g. all long bones) but some irregular bones such as the os coxa (hip) and vertebrae have multiple primary centers." [http://en.wikipedia.org/wiki/Ossification_center#Primary] +synonym: "centrum ossificationis primarium" EXACT LATIN [NominaAnatomica:NA] +synonym: "primarium" BROAD [FMA:TA] +synonym: "primary ossification centre" EXACT [FMA:75447] +xref: FMA:75447 +xref: http://linkedlifedata.com/resource/umls/id/C1184750 +xref: NCIT:C34263 +xref: Primary +xref: UMLS:C1184750 {source="ncithesaurus:Primary_Ossification_Center"} +is_a: UBERON:0010355 {source="FMA"} ! ossification center + +[Term] +id: UBERON:0010357 +name: secondary ossification center +def: "A secondary ossification center is the area of ossification that appears after the primary ossification center has already appeared - most of which appear during the postnatal and adolescent years. Most bones have more than one secondary ossification center. In long bones, the secondary centres appear in the epiphyses." [http://en.wikipedia.org/wiki/Ossification_center#Secondary] +synonym: "centrum ossificationis secundarium" EXACT LATIN [NominaAnatomica:NA] +synonym: "secondary ossification centre" EXACT [FMA:75448] +synonym: "secundarium" BROAD [FMA:TA] +xref: FMA:75448 +xref: Secondary +is_a: UBERON:0010355 {source="FMA"} ! ossification center + +[Term] +id: UBERON:0010358 +name: arch of centrum of vertebra +def: "An arch-shaped structure of the vertebra that extends dorsally (neural arch) or ventrally (hemal arch) from the vertebral centrum" [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "arch of vertebra" NARROW [FMA:11946] +synonym: "arcus vertebrae (vertebralis)" NARROW [FMA:11946] +synonym: "vertebra arch" NARROW [MA:0001453] +synonym: "vertebral arch" NARROW [FMA:11946] +xref: EMAPA:36614 +xref: FMA:11946 +is_a: UBERON:0004765 ! skeletal element +relationship: part_of UBERON:0002412 {source="FMA"} ! vertebra + +[Term] +id: UBERON:0010359 +name: pharyngeal arch mesenchyme from neural crest +def: "Mesenchyme that develops_from a neural crest and is part of a entire pharyngeal arch associated mesenchyme." [OBOL:automatic] +comment: Partially implements https://github.com/obophenotype/uberon/wiki/The-neural-crest NC meeting scheme +synonym: "arch mesenchyme from neural crest" EXACT [] +synonym: "branchial arch mesenchyme from neural crest" EXACT [] +synonym: "neural crest derived arch mesenchyme" EXACT [] +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0002342 ! neural crest +intersection_of: part_of UBERON:0010046 ! entire pharyngeal arch associated mesenchyme +relationship: part_of UBERON:0010046 ! entire pharyngeal arch associated mesenchyme + +[Term] +id: UBERON:0010360 +name: pharyngeal arch mesenchyme from head mesenchyme +def: "Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a entire pharyngeal arch associated mesenchyme." [OBOL:automatic] +comment: Partially implements https://github.com/obophenotype/uberon/wiki/The-neural-crest NC meeting scheme +synonym: "arch mesenchyme from head mesenchyme" EXACT [] +synonym: "branchial arch mesenchyme from head mesenchyme" EXACT [] +synonym: "head mesenchyme derived arch mesenchyme" EXACT [] +is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0006904 ! head mesenchyme from mesoderm +intersection_of: part_of UBERON:0010046 ! entire pharyngeal arch associated mesenchyme +relationship: develops_from UBERON:0006904 ! head mesenchyme from mesoderm +relationship: part_of UBERON:0010046 ! entire pharyngeal arch associated mesenchyme + +[Term] +id: UBERON:0010361 +name: synostosis +def: "Nonsynovial joint in which the articulating bones are connected by bone. Examples: epiphyseal junction, manubriosternal synostosis." [FMA:7499] +synonym: "bony union" EXACT [FMA:7499] +synonym: "junctura ossea" EXACT LATIN [FMA:TA] +xref: FMA:7499 +xref: http://www.snomedbrowser.com/Codes/Details/1216008 +xref: ZFA:0005610 +is_a: UBERON:0011134 {source="FMA"} ! nonsynovial joint + +[Term] +id: UBERON:0010362 +name: endoskeleton +def: "Skeletal subdivision that undergoes indirect development and includes elements that develop as a replacement or substitution of other elements or tissues." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000037] +synonym: "replacement skeleton" EXACT [VSAO:curator] +xref: http://en.wikipedia.org/wiki/Endoskeleton +xref: VSAO:0000037 +xref: XAO:0004026 +is_a: UBERON:0010912 {source="VSAO"} ! subdivision of skeleton +relationship: composed_primarily_of UBERON:0010522 ! replacement element + +[Term] +id: UBERON:0010363 +name: endochondral element +def: "A skeletal element that has the potential to participate in endochondral ossification, and may participate in intramembranous ossification." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000139] +synonym: "endochondral replacement element" EXACT [VSAO:0000139] +xref: VSAO:0000139 +xref: XAO:0004017 +xref: ZFA:0005620 +is_a: UBERON:0004765 {source="VSAO"} ! skeletal element + +[Term] +id: UBERON:0010364 +name: dermal skeleton +def: "Skeletal subdivision that undergoes direct development and includes elements that either develop in association with the basement membrane of the ectoderm or are homologous with such elements; includes dermatocranium, components of the appendicular skeleton, teeth and tooth-like elements of the oropharynx, and integumentary elements." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000035] +comment: This ontology covers metazoa, so we do not use exoskeleton as primary label, as in VSAO +synonym: "dermal skeletal system" RELATED [VSAO:curator] +synonym: "dermoskeleton" RELATED [VSAO:curator] +synonym: "desmoskeleton" RELATED [VSAO:curator] +synonym: "exoskeleton" BROAD INCONSISTENT [VSAO:curator] +xref: VSAO:0000035 +xref: XAO:0004025 +is_a: UBERON:0010912 {source="VSAO"} ! subdivision of skeleton + +[Term] +id: UBERON:0010365 +name: odontoid tissue +alt_id: UBERON:0001973 +def: "Skeletal tissue that is part of the exoskeleton and derived from an odontogenic papilla." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000063] +subset: uberon_slim +synonym: "dental tissue" RELATED [VSAO:curator] +synonym: "odontogenic tissue" EXACT [VSAO:curator] +synonym: "portion of substance of tooth" NARROW [FMA:63001] +synonym: "substance of tooth" NARROW [FMA:63001] +synonym: "tooth hard tissue" RELATED [VT:0003930] +synonym: "tooth substance" NARROW [MA:0002540] +synonym: "tooth tissue" RELATED [] +xref: EMAPA:35872 +xref: FMA:63001 +xref: http://linkedlifedata.com/resource/umls/id/C1519551 +xref: MA:0002540 +xref: NCIT:C33794 +xref: UMLS:C1519551 {source="ncithesaurus:Tooth_Tissue"} +xref: VSAO:0000063 +xref: XAO:0004046 +xref: ZFA:0005623 +is_a: UBERON:0004755 ! skeletal tissue +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0004755 ! skeletal tissue +intersection_of: develops_from UBERON:0001763 ! odontogenic papilla +intersection_of: part_of UBERON:0010364 ! dermal skeleton +relationship: contributes_to_morphology_of UBERON:0001091 ! calcareous tooth +relationship: develops_from UBERON:0001763 ! odontogenic papilla +relationship: part_of UBERON:0010364 ! dermal skeleton + +[Term] +id: UBERON:0010366 +name: conjunctival vasculature +def: "A vasculature that is part of a conjunctiva." [OBOL:automatic] +synonym: "conjunctival veins" EXACT [FMA:70887] +synonym: "conjunctival veins set" EXACT [FMA:70887] +synonym: "set of conjunctival veins" EXACT [FMA:70887] +synonym: "venae conjunctivales" EXACT LATIN [FMA:TA] +xref: FMA:70887 +is_a: UBERON:0002203 ! vasculature of eye +intersection_of: UBERON:0002049 ! vasculature +intersection_of: part_of UBERON:0001811 ! conjunctiva +relationship: part_of UBERON:0001811 ! conjunctiva + +[Term] +id: UBERON:0010367 +name: conjunctival vein +def: "A vein that is part of a conjunctiva." [OBOL:automatic] +synonym: "conjunctival blood vessel" BROAD [] +xref: FMA:70887 +xref: http://www.snomedbrowser.com/Codes/Details/149885003 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0001638 ! vein +intersection_of: part_of UBERON:0001811 ! conjunctiva +relationship: part_of UBERON:0010366 ! conjunctival vasculature + +[Term] +id: UBERON:0010368 +name: pulmonary lobule +def: "The smallest anatomical unit of the lung, measuring 0.50 to 2.00 cm in diameter. Each lobule is composed of 4-8 terminal bronchioles and their distal alveolar ducts and sacs. The lobules are separated by fibrous interlobular septa." [ncithesaurus:Pulmonary_Lobule] +synonym: "lobulus pulmonis" EXACT LATIN [FMA:75739, FMA:TA] +xref: FMA:75739 +xref: NCIT:C33428 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0009911 ! lobule +intersection_of: UBERON:0009911 ! lobule +intersection_of: part_of UBERON:0002048 ! lung +relationship: has_part UBERON:0002187 ! terminal bronchiole +relationship: part_of UBERON:0002048 ! lung + +[Term] +id: UBERON:0010369 +name: secondary pulmonary lobule +def: "A unit of lung supplied by three to five terminal bronchioles and contained by fibrous septa." [http://www.ncbi.nlm.nih.gov/pubmed/3259815] +synonym: "lobulus pulmonis secondarius" EXACT LATIN [FMA:7414, FMA:TA] +xref: FMA:7414 +is_a: UBERON:0010368 {source="FMA"} ! pulmonary lobule +relationship: part_of UBERON:0008946 {source="FMA"} ! lung parenchyma + +[Term] +id: UBERON:0010370 +name: tibial vein +def: "One of the veins of the lower leg; empty into the popliteal vein" [http://www.thefreedictionary.com/tibial+vein] +synonym: "vena tibialis" EXACT [] +xref: EMAPA:37199 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C0447138 +xref: MA:0002243 +xref: NCIT:C33787 +xref: UMLS:C0447138 {source="ncithesaurus:Tibial_Vein"} +is_a: UBERON:0001638 {source="MA"} ! vein +is_a: UBERON:0003503 ! leg blood vessel + +[Term] +id: UBERON:0010371 +name: ecto-epithelium +def: "Epithelium composed of cells that develops from the ectoderm[FMA,modified]." [FMA:69064] +synonym: "ectoderm-derived epithelium" EXACT [] +xref: FMA:69064 +is_a: UBERON:0000483 ! epithelium +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000483 ! epithelium +intersection_of: develops_from UBERON:0000924 ! ectoderm + +[Term] +id: UBERON:0010372 +name: uncinate process of ethmoid +def: "In the ethmoid bone, a curved lamina, the uncinate process, projects downward and backward from this part of the labyrinth; it forms a small part of the medial wall of the maxillary sinus, and articulates with the ethmoidal process of the inferior nasal concha." [http://en.wikipedia.org/wiki/Uncinate_process_of_ethmoid_bone] +synonym: "processus uncinatus" RELATED [http://en.wikipedia.org/wiki/Uncinate_process_of_ethmoid_bone] +synonym: "processus uncinatus ossis ethmoidalis" RELATED LATIN [http://en.wikipedia.org/wiki/Uncinate_process_of_ethmoid_bone] +synonym: "uncinate process" BROAD INCONSISTENT [] +synonym: "uncinate process of the ethmoid" EXACT [http://en.wikipedia.org/wiki/Uncinate_process_of_ethmoid_bone] +synonym: "uncinate process of the ethmoid bone" EXACT [http://en.wikipedia.org/wiki/Uncinate_process_of_ethmoid_bone] +xref: FMA:57455 +xref: http://en.wikipedia.org/wiki/Uncinate_process_of_ethmoid_bone +xref: http://www.snomedbrowser.com/Codes/Details/306373001 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +disjoint_from: UBERON:0010373 ! uncinate process of pancreas +relationship: part_of UBERON:0001679 ! ethmoid bone + +[Term] +id: UBERON:0010373 +name: uncinate process of pancreas +def: "In the head of the pancreas, the angle of junction of the lower and left lateral borders forms a prolongation, termed the uncinate process. During the embryonic development of the distal foregut, the duodenum c-shape is formed while rotating the ventral pancreatic bud into the dorsal bud. The dorsal and ventral pancreatic buds fuse. The dorsal pancreatic bud becomes the body, tail, and isthmus of the pancreas and the ventral pancreatic bud forms the pancreatic head and uncinate process[WP]" [http://en.wikipedia.org/wiki/Uncinate_process_of_pancreas] +synonym: "lesser pancreas" EXACT [FMA:15857] +synonym: "processus uncinatus" BROAD LATIN [] +synonym: "processus uncinatus (pancreas)" EXACT [FMA:15857] +synonym: "processus uncinatus pancreatis" EXACT LATIN [http://en.wikipedia.org/wiki/Uncinate_process_of_pancreas] +synonym: "uncinate process" BROAD [EMAPA:17509] +synonym: "Winslow's pancreas" EXACT [FMA:15857] +xref: EMAPA:17509 +xref: FMA:15857 +xref: http://en.wikipedia.org/wiki/Uncinate_process_of_pancreas +xref: http://linkedlifedata.com/resource/umls/id/C0227580 +xref: http://www.snomedbrowser.com/Codes/Details/245383008 +xref: NCIT:C62432 +xref: UMLS:C0227580 {source="ncithesaurus:Uncinate_Pancreas"} +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004529 {source="FMA"} ! anatomical projection +relationship: develops_from UBERON:0003924 {source="Wikipedia"} ! ventral pancreatic bud +relationship: part_of UBERON:0001069 {source="FMA"} ! head of pancreas + +[Term] +id: UBERON:0010375 +name: pancreas dorsal primordium +synonym: "dorsal pancreas" RELATED INCONSISTENT [FMA:79793] +xref: EHDAA2:0001384 +xref: FMA:79793 +is_a: UBERON:0001048 ! primordium +is_a: UBERON:0006598 ! presumptive structure +intersection_of: UBERON:0001048 ! primordium +intersection_of: has_potential_to_develop_into UBERON:0009708 ! dorsal pancreas +relationship: has_potential_to_develop_into UBERON:0009708 ! dorsal pancreas +relationship: part_of UBERON:0003921 {source="EHDAA2"} ! pancreas primordium + +[Term] +id: UBERON:0010376 +name: pancreas ventral primordium +synonym: "ventral pancreas" RELATED INCONSISTENT [FMA:79794] +xref: EHDAA2:0001387 +xref: FMA:79794 +is_a: UBERON:0001048 ! primordium +is_a: UBERON:0006598 ! presumptive structure +intersection_of: UBERON:0001048 ! primordium +intersection_of: has_potential_to_develop_into UBERON:0009709 ! ventral pancreas +relationship: has_potential_to_develop_into UBERON:0009709 ! ventral pancreas +relationship: part_of UBERON:0003921 {source="EHDAA2"} ! pancreas primordium + +[Term] +id: UBERON:0010377 +name: mesenchyme from somatopleure +def: "Mesenchyme that develops_from a somatopleure." [OBOL:automatic] +xref: EHDAA2:0001120 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0004874 ! somatopleure +intersection_of: part_of UBERON:0000922 ! embryo +relationship: develops_from UBERON:0004874 ! somatopleure +relationship: part_of UBERON:0009142 {source="EHDAA2"} ! entire embryonic mesenchyme + +[Term] +id: UBERON:0010378 +name: mesenchyme from splanchnopleure +def: "Mesenchyme that develops_from a splanchnopleure." [OBOL:automatic] +xref: EHDAA2:0001122 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0004873 ! splanchnopleure +intersection_of: part_of UBERON:0000922 ! embryo +relationship: develops_from UBERON:0004873 ! splanchnopleure +relationship: part_of UBERON:0009142 {source="EHDAA2"} ! entire embryonic mesenchyme + +[Term] +id: UBERON:0010379 +name: superior tarsal muscle +def: "The superior tarsal muscle is a smooth muscle adjoining the levator palpebrae superioris muscle that helps to raise the upper eyelid." [http://en.wikipedia.org/wiki/Superior_tarsal_muscle] +synonym: "mueller muscle" RELATED [http://en.wikipedia.org/wiki/Superior_tarsal_muscle] +synonym: "Mueller's muscle" EXACT [FMA:49058] +synonym: "Muller's muscle" RELATED [http://en.wikipedia.org/wiki/Superior_tarsal_muscle] +synonym: "musculus tarsalis superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_tarsal_muscle] +synonym: "Müller's muscle" RELATED [http://en.wikipedia.org/wiki/Superior_tarsal_muscle] +synonym: "the superior tarsal muscle" RELATED [http://en.wikipedia.org/wiki/Superior_tarsal_muscle] +xref: FMA:49058 +xref: http://en.wikipedia.org/wiki/Superior_tarsal_muscle +xref: http://www.snomedbrowser.com/Codes/Details/244775007 +is_a: UBERON:0003386 ! smooth muscle of eye +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0004773 ! superior eyelid tarsus +relationship: continuous_with UBERON:0001604 {source="FMA"} ! levator palpebrae superioris +relationship: has_muscle_origin UBERON:0001604 {notes="underside of levator palpebrae superioris", source="dbpedia"} ! levator palpebrae superioris +relationship: innervated_by UBERON:0000013 {source="dbpedia"} ! sympathetic nervous system +relationship: part_of UBERON:0004773 ! superior eyelid tarsus + +[Term] +id: UBERON:0010380 +name: enteric nerve +def: "the neurons that innervate the esophagus, stomach, small and large bowel" [MGI:csmith, MP:0001046] +subset: pheno_slim +xref: EMAPA:37479 {source="MA:th"} +xref: MA:0001145 +is_a: UBERON:0001021 ! nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0002005 ! enteric nervous system +relationship: contributes_to_morphology_of UBERON:0002005 ! enteric nervous system +relationship: part_of UBERON:0002005 ! enteric nervous system + +[Term] +id: UBERON:0010384 +name: lumen of laryngopharynx +def: "A anatomical space that is enclosed by a hypopharynx." [OBOL:automatic] +synonym: "laryngopharynx lumen" EXACT [FMA:55096] +xref: FMA:55096 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0001051 ! hypopharynx +relationship: luminal_space_of UBERON:0001051 ! hypopharynx +relationship: part_of UBERON:0001051 {source="FMA"} ! hypopharynx +relationship: part_of UBERON:0001731 ! cavity of pharynx + +[Term] +id: UBERON:0010386 +name: Peyer's patch follicle +def: "A lymphoid follicle that is part of a Peyer's patch." [OBOL:automatic] +subset: pheno_slim +synonym: "peyer's patch follicle" EXACT [MA:0000732] +xref: MA:0000732 +is_a: UBERON:0000444 ! lymphoid follicle +intersection_of: UBERON:0000444 ! lymphoid follicle +intersection_of: part_of UBERON:0001211 ! Peyer's patch +relationship: contributes_to_morphology_of UBERON:0001211 ! Peyer's patch +relationship: part_of UBERON:0001211 ! Peyer's patch + +[Term] +id: UBERON:0010387 +name: Peyer's patch T cell area +def: "The Peyer's patch area normally occupied by T lymphocytes" [MP:0002392] +subset: pheno_slim +xref: EMAPA:37939 {source="MA:th"} +is_a: UBERON:0010393 ! T cell domain +is_a: UBERON:0013765 ! digestive system element +intersection_of: UBERON:0010393 ! T cell domain +intersection_of: part_of UBERON:0001211 ! Peyer's patch +relationship: part_of UBERON:0001211 ! Peyer's patch + +[Term] +id: UBERON:0010388 +name: proximal segment of rib +def: "The segment of the rib that connects to a vertebra[MP]. a small part of the rib composed of the head, neck, tuberculum and a short proximal part of the body[PMID]" [http://www.ncbi.nlm.nih.gov/pubmed/15906248, MP:0000152] +comment: The proximal rib derives from the caudal half of somite[PMID:15906248] +subset: pheno_slim +synonym: "costal part of rib" RELATED [] +synonym: "proximal part of rib" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/15906248] +synonym: "proximal rib" EXACT [MA:0001400] +synonym: "proximal rib segment" EXACT [] +synonym: "vertebral part of rib" RELATED [] +xref: EMAPA:37495 {source="MA:th"} +xref: MA:0001400 +xref: MA:0001414 +is_a: UBERON:0005055 ! zone of long bone +relationship: connected_to UBERON:0002412 ! vertebra +relationship: part_of UBERON:0002228 {source="MA"} ! rib + +[Term] +id: UBERON:0010389 +name: pterygoid bone +def: "A bone which corresponds to the inner plate of the pterygoid process of the human skull, but which, in all vertebrates below mammals, is not connected with the posterior nares, but serves to connect the palatine bones with the point of suspension of the lower jaw" [http://www.websters-online-dictionary.org/definitions/Pterygoid+bone] +comment: Sources vary as to whether the pterygoid corresponds to the pterygoid processes in general, or the latter/inner plate. +subset: pheno_slim +synonym: "inner plate of pterygoid process" RELATED [MA:0001471] +synonym: "lamina lateralis (processus pterygoideus)" EXACT [FMA:54687, MP:0004452] +synonym: "lamina lateralis processi pterygoideus ossis sphenoidalis" EXACT LATIN [FMA:TA, MP:0004452] +synonym: "lateral lamina of pterygoid process" EXACT [FMA:54687, MP:0004452] +synonym: "lateral plate of pterygoid process" EXACT [FMA:54687, MP:0004452] +synonym: "lateral plate of sphenoid" EXACT [FMA:54687, MP:0004452] +synonym: "lateral pterygoid plate" EXACT [] +synonym: "pterygoid" BROAD [AAO:0000521] +xref: AAO:0000521 +xref: EMAPA:36617 +xref: FMA:54687 +xref: http://www.snomedbrowser.com/Codes/Details/415639001 +xref: MA:0001471 +xref: Pterygoid:bone +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0011164 {source="MA"} ! neurocranium bone +is_a: UBERON:0012071 ! palate bone +relationship: contributes_to_morphology_of UBERON:0004649 ! sphenoid bone pterygoid process +relationship: part_of UBERON:0003108 {source="AAO"} ! suspensorium +relationship: part_of UBERON:0004649 {source="MA"} ! sphenoid bone pterygoid process + +[Term] +id: UBERON:0010390 +name: lumen of urethra +def: "An organ cavity that is part of a urethra." [OBOL:automatic] +synonym: "urethral lumen" EXACT [FMA:19709] +xref: FMA:19709 +xref: http://www.snomedbrowser.com/Codes/Details/279432008 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0000057 ! urethra +relationship: luminal_space_of UBERON:0000057 ! urethra +relationship: part_of UBERON:0000057 ! urethra + +[Term] +id: UBERON:0010391 +name: parametrium +def: "The subserous connective tissue of the pelvic floor of the supracervical portion of the uterus. The parametrium extends laterally between the layers of the broad ligament." [ncithesaurus:Parametrium] +comment: subserous coat of the uterus laterally between the layers of the broad ligament[MP] - todo - check relationships +xref: BTO:0005627 +xref: FMA:77061 +xref: http://en.wikipedia.org/wiki/Parametrium +xref: http://linkedlifedata.com/resource/umls/id/C0227822 +xref: http://www.snomedbrowser.com/Codes/Details/280455005 +xref: NCIT:C12320 +xref: UMLS:C0227822 {source="ncithesaurus:Parametrium"} +is_a: UBERON:0003885 ! mesometrium + +[Term] +id: UBERON:0010392 +name: B cell domain +is_a: UBERON:0010394 ! lymphocyte domain + +[Term] +id: UBERON:0010393 +name: T cell domain +is_a: UBERON:0010394 ! lymphocyte domain + +[Term] +id: UBERON:0010394 +name: lymphocyte domain +is_a: UBERON:0005057 ! immune organ +is_a: UBERON:0010001 ! cell cluster organ +relationship: part_of UBERON:0002465 ! lymphoid system + +[Term] +id: UBERON:0010395 +name: lymph node primary follicle +def: "An unstimulated network of follicular dendritic cells and small resting B cells in the lymph node cortex." [https://github.com/obophenotype/uberon/issues/6, MP:0002345] +subset: pheno_slim +synonym: "primary follicle of lymph node" EXACT [] +xref: EMAPA:35530 +xref: FMA:312350 +xref: MA:0000743 +is_a: UBERON:0010422 ! primary nodular lymphoid tissue +is_a: UBERON:0010748 ! lymph node follicle +intersection_of: UBERON:0010422 ! primary nodular lymphoid tissue +intersection_of: part_of UBERON:0000029 ! lymph node +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan + +[Term] +id: UBERON:0010396 +name: afferent lymphatic vessel +def: "Lymphatic vessel that enters the lymph node. The afferent lymph vessels enter at all parts of the periphery of the lymph node, and after branching and forming a dense plexus in the substance of the capsule, open into the lymph sinuses of the cortical part. In doing this they lose all their coats except their endothelial lining, which is continuous with a layer of similar cells lining the lymph paths" [MP:MP] +subset: pheno_slim +synonym: "vasa afferentia lymphoglandula" EXACT [http://en.wikipedia.org/wiki/Afferent_lymphatic_vessels] +synonym: "vasa afferentia lymphoglandulae" EXACT [http://en.wikipedia.org/wiki/Afferent_lymphatic_vessels] +xref: http://en.wikipedia.org/wiki/File\:Illu_lymph_node_structure.png +xref: MA:0000748 +is_a: UBERON:0001473 ! lymphatic vessel +relationship: contributes_to_morphology_of UBERON:0000029 ! lymph node +relationship: part_of UBERON:0000029 ! lymph node + +[Term] +id: UBERON:0010397 +name: efferent lymphatic vessel +def: "Lymphatic vessel that exits the lymph node. The efferent lymphatic vessel commences from the lymph sinuses of the medullary portion of the lymph nodes and leave the lymph nodes either to veins or greater nodes. Efferent lymphatic vessels are also found in the thymus and spleen. This is in contrast to afferent lymphatic vessels, which are found only in lymph nodes." [MP:MP] +subset: pheno_slim +synonym: "efferent lymphatic vessel" RELATED [http://en.wikipedia.org/wiki/Efferent_lymph_vessel] +synonym: "efferent lymphatic vessels" RELATED [http://en.wikipedia.org/wiki/Efferent_lymph_vessel] +xref: http://en.wikipedia.org/wiki/Efferent_lymph_vessel +xref: MA:0000749 +is_a: UBERON:0001473 ! lymphatic vessel + +[Term] +id: UBERON:0010398 +name: spleen marginal sinus +def: "The border region surrounding the spleen B cell follicles and the periarteriolar lymphoid sheath that separates it from the marginal zone that mediates lymphocyte entry into the white pulp from the blood" [MP:MP] +subset: pheno_slim +synonym: "splenic marginal sinus" EXACT [MP:0002363] +xref: EMAPA:37964 {source="MA:th", seeAlso="https://github.com/obophenotype/mouse-anatomy-ontology/issues/117"} +xref: http://linkedlifedata.com/resource/umls/id/C1710157 +xref: MA:0000754 +xref: NCIT:C49776 +xref: UMLS:C1710157 {source="ncithesaurus:Splenic_Marginal_Sinus"} +is_a: UBERON:0001959 ! white pulp of spleen + +[Term] +id: UBERON:0010399 +name: spleen trabecular artery +def: "one of the branches of the splenic artery[MP]" [http://en.wikipedia.org/wiki/Trabecular_arteries, MP:0002354] +subset: pheno_slim +synonym: "trabecular artery" RELATED [] +xref: http://linkedlifedata.com/resource/umls/id/C1710159 +xref: MA:0000759 +xref: NCIT:C49775 +xref: Trabecular:arteries +xref: UMLS:C1710159 {source="ncithesaurus:Splenic_Trabecular_Artery"} +is_a: UBERON:0003497 ! abdomen blood vessel +is_a: UBERON:0004573 ! systemic artery +intersection_of: UBERON:0001637 ! artery +intersection_of: part_of UBERON:0001265 ! trabecula of spleen +relationship: branching_part_of UBERON:0001194 {source="MP"} ! splenic artery +relationship: contributes_to_morphology_of UBERON:0002106 ! spleen +relationship: part_of UBERON:0001194 ! splenic artery +relationship: part_of UBERON:0001265 ! trabecula of spleen + +[Term] +id: UBERON:0010400 +name: spleen trabecular vein +def: "one of the veins that feed the splenic vein" [http://en.wikipedia.org/wiki/Trabecular_veins, MP:0002228] +subset: pheno_slim +synonym: "trabecular vein" RELATED [http://en.wikipedia.org/wiki/Trabecular_veins] +xref: http://linkedlifedata.com/resource/umls/id/C1710160 +xref: MA:0000760 +xref: NCIT:C49779 +xref: Trabecular:veins +xref: UMLS:C1710160 {source="ncithesaurus:Splenic_Trabecular_Vein"} +is_a: UBERON:0013126 ! vein of abdomen +intersection_of: UBERON:0001638 ! vein +intersection_of: part_of UBERON:0001265 ! trabecula of spleen +relationship: contributes_to_morphology_of UBERON:0002106 ! spleen +relationship: part_of UBERON:0001265 ! trabecula of spleen + +[Term] +id: UBERON:0010401 +name: spleen central arteriole +def: "A blood vessel surrounded by the periarteriolar lymphoid sheath that connects the trabecular artery to the trabecular vein" [MP:MP] +subset: pheno_slim +synonym: "central arteriole" BROAD [] +synonym: "follicular arteriole" EXACT [MP:0002361] +synonym: "splenic arteriole" BROAD [] +synonym: "splenic central arteriole" EXACT [MP:0002361] +xref: MA:0000763 +is_a: UBERON:0022292 ! splenic arteriole +relationship: branching_part_of UBERON:0010399 {source="Trabecular:arteries"} ! spleen trabecular artery +relationship: connected_to UBERON:0010400 ! spleen trabecular vein +relationship: contributes_to_morphology_of UBERON:0001959 ! white pulp of spleen +relationship: part_of UBERON:0001959 ! white pulp of spleen +relationship: part_of UBERON:0010399 ! spleen trabecular artery + +[Term] +id: UBERON:0010402 +name: epidermis suprabasal layer +def: "Any layer of the epidermis that is superior to the stratum basale" [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/10469309, MP:0001233] +subset: pheno_slim +synonym: "suprabasal cell layer of skin" EXACT [] +synonym: "suprabasal layer" BROAD [MP:0001233] +synonym: "suprabasal layer of epidermis" EXACT [] +xref: EMAPA:35315 +xref: MA:0000808 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0013754 ! integumentary system layer +intersection_of: UBERON:0013754 ! integumentary system layer +intersection_of: part_of UBERON:0001003 ! skin epidermis +intersection_of: superficial_to UBERON:0002025 ! stratum basale of epidermis +relationship: part_of UBERON:0001003 ! skin epidermis +relationship: superficial_to UBERON:0002025 ! stratum basale of epidermis + +[Term] +id: UBERON:0010403 +name: brain marginal zone +def: "The part of the future brain that is derived from the mantle layer of the neural tube" [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "brain marginal zone" BROAD [MA:0000812] +xref: DHBA:10508 +xref: EMAPA:32680 +xref: MA:0000812 +is_a: UBERON:0005423 ! developing anatomical structure +relationship: develops_from UBERON:0004062 ! neural tube marginal layer +relationship: part_of UBERON:0000955 ! brain + +[Term] +id: UBERON:0010404 +name: lateral ventricle subependymal layer +def: "A cell layer below the ependyma in the lateral ventricles of the brain. This region contains adult neural stem cells which have the potential to generate new neurons and glial cells via neurogenesis. It is an adult version of the embryonic forebrain germinal zone" [http://en.wikipedia.org/wiki/Subependymal_zone] +subset: pheno_slim +xref: EMAPA:35489 +xref: MA:0000965 +xref: Subependymal:zone +is_a: UBERON:0000119 {source="cjm"} ! cell layer +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: contributes_to_morphology_of UBERON:0000955 ! brain +relationship: part_of UBERON:0002285 {source="MA"} ! telencephalic ventricle +relationship: part_of UBERON:0004922 {source="Wikipedia"} ! postnatal subventricular zone + +[Term] +id: UBERON:0010405 +name: spinal cord lateral motor column +def: "Column of motor neurons which innervate muscles in the limb; motor neurons in the lateral motor column are further organized into pools, each of which innervates a specific muscle in the limb" [MP:MP] +subset: pheno_slim +xref: MA:0001129 +is_a: UBERON:0003990 ! spinal cord motor column +is_a: UBERON:0005374 ! spinal cord lateral column + +[Term] +id: UBERON:0010406 +name: cholinergic enteric nerve +def: "nerve fibers that utilize acetylcholine as a neurotransmitter to the intestinal system" [MP:0001049] +subset: pheno_slim +xref: EMAPA:37480 {source="MA:th"} +xref: MA:0001146 +is_a: UBERON:0010380 ! enteric nerve + +[Term] +id: UBERON:0010408 +name: ocular angle artery +def: "The angular artery is the terminal part of the facial artery; it ascends to the medial angle of the eye's orbit, imbedded in the fibers of the angular head of the Quadratus labii superioris, and accompanied by the angular vein." [MP:MP] +synonym: "angular artery" EXACT [FMA:49583] +xref: EMAPA:37673 {source="MA:th"} +xref: FMA:49583 +xref: http://linkedlifedata.com/resource/umls/id/C0226116 +xref: http://www.snomedbrowser.com/Codes/Details/145238006 +xref: MA:0002010 +xref: NCIT:C32076 +xref: UMLS:C0226116 {source="ncithesaurus:Angular_Artery"} +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: branching_part_of UBERON:0001612 ! facial artery +relationship: part_of UBERON:0001612 ! facial artery + +[Term] +id: UBERON:0010409 +name: ocular surface region +def: "The integrated unit (of the eye) that consists of the conjunctiva, the corneal surface, and the ocular mucosal adnexa including the lid margins and the meibomian gland openings, the lacrimal glands and the lacrimal drainage system, all which are critical to maintain ocular surface integrity and provide protection from external antigens and pathogenic microorganisms." [MP:0013754] +subset: pheno_slim +synonym: "eye surface" EXACT [MA:0002486] +synonym: "eye surface region" EXACT [] +synonym: "ocular surface" EXACT [] +xref: EMAPA:35336 +xref: MA:0002486 +is_a: UBERON:0000063 ! organ subunit +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0000019 ! camera-type eye +relationship: superficial_to UBERON:0022288 ! surface of eyeball + +[Term] +id: UBERON:0010410 +name: inguinal fat pad +def: "encapsulated adipose tissue found in the groin" [MGI:csmith] +subset: pheno_slim +synonym: "fat depot of inguinal region" EXACT [] +synonym: "inguinal fat depot" EXACT [] +xref: MA:0002548 +is_a: UBERON:0003838 ! abdominal segment connective tissue +is_a: UBERON:0003916 ! fat pad +intersection_of: UBERON:0003916 ! fat pad +intersection_of: part_of UBERON:0008337 ! inguinal part of abdomen +relationship: part_of UBERON:0008337 ! inguinal part of abdomen + +[Term] +id: UBERON:0010411 +name: retroperitoneal fat pad +def: "encapsulated adipose tissue found on the dorsal side of the peritoneum" [MGI:csmith, MP:0005337] +subset: pheno_slim +synonym: "retroperitoneal fat depot" EXACT [] +xref: MA:0002549 +is_a: UBERON:0003427 ! abdominal fat pad +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0003916 ! fat pad +intersection_of: part_of UBERON:0002358 ! peritoneum +relationship: located_in UBERON:0003693 ! retroperitoneal space +relationship: part_of UBERON:0002358 ! peritoneum + +[Term] +id: UBERON:0010412 +name: epididymal fat pad +def: "encapsulated adipose tissue associated with the epididymis" [MGI:csmith, MGI:rbabiuk] +subset: pheno_slim +synonym: "periepididymal fat pad" EXACT [MP:0009288] +xref: EMAPA:35316 +xref: MA:0002550 +is_a: UBERON:0003916 ! fat pad +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0003916 ! fat pad +intersection_of: part_of UBERON:0001301 ! epididymis +relationship: part_of UBERON:0001301 ! epididymis + +[Term] +id: UBERON:0010413 +name: parametrial fat pad +def: "encapsulated adipose tissue associated with the extension of the subserous coat of the uterus laterally between the layers of the broad ligament" [MGI:csmith] +subset: pheno_slim +synonym: "parametrial adipose tissue" RELATED [BTO:0005628] +synonym: "parametrial fat" RELATED [BTO:0005628] +synonym: "parametrial fat depot" EXACT [MP:0009301] +xref: BTO:0005628 +xref: MA:0002953 +is_a: UBERON:0014394 ! uterine fat pad +is_a: UBERON:0015143 ! mesenteric fat pad +intersection_of: UBERON:0003916 ! fat pad +intersection_of: part_of UBERON:0010391 ! parametrium +relationship: part_of UBERON:0010391 ! parametrium + +[Term] +id: UBERON:0010414 +name: omental fat pad +def: "encapsulated adipose tissue associated with the fold of peritoneal tissue that extends from the stomach to the posterior abdominal wall after associating with the transverse colon" [MP:MP] +subset: pheno_slim +synonym: "omental fat depot" EXACT [MP:0010044] +xref: MA:0002956 +is_a: UBERON:0010411 ! retroperitoneal fat pad +intersection_of: UBERON:0003427 ! abdominal fat pad +intersection_of: part_of UBERON:0003688 ! omentum +relationship: part_of UBERON:0003688 ! omentum + +[Term] +id: UBERON:0010415 +name: barrel cortex +def: "One of the discrete functional units of the somatosensory cortex that processes tactile information derived from the vibrissae." [MP:0003989] +subset: pheno_slim +synonym: "barrel cortex" RELATED [NeuroNames:2703] +synonym: "barrel field" RELATED [NeuroNames:2703] +synonym: "barrel field of the primary somatosensory area" RELATED [NeuroNames:2703] +synonym: "barrel field sensory area" RELATED [NeuroNames:2703] +synonym: "primary somatosensory area barrel field" RELATED [BAMS:SSp-bfd] +synonym: "primary somatosensory area barrel field" RELATED [BAMS:SS-bfd] +synonym: "primary somatosensory area, barrel field" RELATED [NeuroNames:2703] +synonym: "primary somatosensory area, barrel field" RELATED [ABA:SSp-bfd] +synonym: "primary somatosensory cortex, barrel field" RELATED [NeuroNames:2703] +synonym: "whisker barrels" RELATED [NeuroNames:2703] +synonym: "whisker sensory area" RELATED [NeuroNames:2703] +xref: BAMS:SS-bfd +xref: BAMS:SSp-bfd +xref: EMAPA:35163 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2703 +xref: MA:0002712 +xref: MBA:329 +xref: NLX:81 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0035014 {source="cjm"} ! functional part of brain +relationship: contributes_to_morphology_of UBERON:0008933 ! primary somatosensory cortex +relationship: part_of UBERON:0008933 {source="MBA"} ! primary somatosensory cortex + +[Term] +id: UBERON:0010416 +name: lymph node B cell domain +def: "A part of the lymph node cortex in which B lymphocytes home to primary follicles to survey follicular dendritic cells (FDCs); antigen stimulated B cells proliferate and differentiate within the follicles forming distinctive germinal centers" [MP:MP] +subset: pheno_slim +synonym: "lymph node B cell dependent cortex" EXACT [MP:0002344] +synonym: "lymph node B-cell domain" EXACT [MP:0002344] +synonym: "nodular lymph node cortex" EXACT [MP:0002344] +xref: MA:0002851 +is_a: UBERON:0010392 ! B cell domain +intersection_of: UBERON:0010392 ! B cell domain +intersection_of: part_of UBERON:0000029 ! lymph node +relationship: part_of UBERON:0002006 {source="MP"} ! cortex of lymph node + +[Term] +id: UBERON:0010417 +name: lymph node T cell domain +def: "The paracortex and interfollicular cortex of the lymph node in which T lymphocytes home to survey dendritic cells" [MP:0002347] +subset: pheno_slim +synonym: "lymph node deep cortex" EXACT [MP:0002347] +synonym: "lymph node T cell dependent paracortex" EXACT [MP:0002347] +synonym: "lymph node T zone" EXACT [] +synonym: "lymph node T-cell domain" EXACT [MP:0002347] +synonym: "T cell zone of lymph node" EXACT [] +synonym: "T zone of lymph node" EXACT [] +xref: EMAPA:37663 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/326870003 +xref: MA:0002852 +is_a: UBERON:0010393 ! T cell domain +intersection_of: UBERON:0010393 ! T cell domain +intersection_of: part_of UBERON:0000029 ! lymph node +relationship: part_of UBERON:0002006 {source="MP"} ! cortex of lymph node + +[Term] +id: UBERON:0010418 +name: urethral opening +def: "An orifice that is part of a lower urinary tract." [OBOL:automatic] +subset: pheno_slim +synonym: "urethral orifice" EXACT [OBOL:automatic] +xref: EMAPA:35965 +xref: MA:0002867 +is_a: UBERON:0000161 ! orifice +intersection_of: UBERON:0000161 ! orifice +intersection_of: part_of UBERON:0001556 ! lower urinary tract +relationship: part_of UBERON:0001556 ! lower urinary tract + +[Term] +id: UBERON:0010419 +name: vibrissa follicle +def: "one of the tubular invaginations of the epidermis enclosing the hair roots and from which grow the vibrissae located on the muzzle and face of many species" [MGI:llw2, MP:0010234] +subset: pheno_slim +synonym: "follicle of sinus hair" EXACT [EMAPA:26759] +synonym: "follicle of vibrissa" EXACT [EMAPA:26720] +synonym: "vibrissa follicle" RELATED [MP:0010234] +synonym: "vibrissal follicle" EXACT [BTO:0003489] +xref: BTO:0003489 +xref: EMAPA:26720 +xref: MA:0002910 +is_a: UBERON:0002073 ! hair follicle +intersection_of: UBERON:0002073 ! hair follicle +intersection_of: part_of UBERON:0011933 ! vibrissa unit +relationship: part_of UBERON:0011933 ! vibrissa unit + +[Term] +id: UBERON:0010420 +name: lymph node follicular corona +def: "A part of the secondary follicle in which naive B cells reside along with some helper T cells, macrophages and follicular dendritic cells; these are displaced by the expanding germinal centre and form a 'mantle' around it" [https://github.com/obophenotype/uberon/issues/7, MP:MP] +subset: pheno_slim +synonym: "lymph node B cell corona" EXACT [CL:tm] +synonym: "lymph node dark zone" EXACT [CL:tm] +synonym: "lymph node follicular mantle" EXACT [MA:0002990] +synonym: "lymph node inactive zone" EXACT [CL:tm] +synonym: "lymph node peripheral zone" EXACT [CL:tm] +xref: EMAPA:37661 {source="MA:th"} +xref: MA:0002990 +is_a: UBERON:0010755 ! secondary follicle corona +intersection_of: UBERON:0010755 ! secondary follicle corona +intersection_of: part_of UBERON:0000029 ! lymph node +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan +relationship: part_of UBERON:0010753 {source="MA"} ! lymph node secondary follicle +relationship: surrounds UBERON:0009039 ! lymph node germinal center + +[Term] +id: UBERON:0010421 +name: spleen B cell corona +def: "The area of the (spleen) secondary B follicle that surrounds the germinal center and harbors the small recirculating B lymphocytes" [CL:tm, http://www.ncbi.nlm.nih.gov/pubmed/17495967, https://github.com/obophenotype/uberon/issues/6] +subset: pheno_slim +synonym: "B cell domain of the spleen" BROAD [MP:0002360] +synonym: "B lymphocyte domain of the spleen" BROAD [] +synonym: "follicle mantle" EXACT [MP:0002360] +synonym: "lymphocytic corona" BROAD [CL:tm, MP:0002360] +synonym: "spleen B cell corona" EXACT [MP:0002360] +synonym: "spleen B-cell corona" EXACT [MP:0002360] +synonym: "spleen lymphocytic corona" EXACT [CL:tm, MP:0002360] +synonym: "spleen mantle zone" RELATED [CL:tm, MP:0002360] +synonym: "splenic B cell corona" EXACT [MP:0002360] +synonym: "splenic corona" BROAD [CL:tm] +xref: EMAPA:37962 {source="MA:th"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010755 ! secondary follicle corona +intersection_of: UBERON:0010755 ! secondary follicle corona +intersection_of: part_of UBERON:0002106 ! spleen +relationship: contributes_to_morphology_of UBERON:0004042 ! spleen secondary B follicle +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan +relationship: part_of UBERON:0004042 {source="CL:tm"} ! spleen secondary B follicle +relationship: surrounds UBERON:0005196 ! spleen germinal center + +[Term] +id: UBERON:0010422 +name: primary nodular lymphoid tissue +def: "A lymphoid follicle containing naive B cells" [CL:tm] +synonym: "primary follicle" RELATED [] +synonym: "primary lymphoid follicle" EXACT [] +synonym: "primary lymphoid nodule" EXACT [FMA:55223] +xref: FMA:55223 +is_a: UBERON:0000444 {source="FMA"} ! lymphoid follicle + +[Term] +id: UBERON:0010423 +name: primary lymphoid nodule of tonsil +def: "A primary nodular lymphoid tissue that is part of a tonsil." [OBOL:automatic] +synonym: "lymphoid nodule of tonsil" RELATED [FMA:86018] +xref: FMA:86018 +is_a: UBERON:0010422 {source="FMA"} ! primary nodular lymphoid tissue +intersection_of: UBERON:0010422 ! primary nodular lymphoid tissue +intersection_of: part_of UBERON:0002372 ! tonsil +relationship: part_of UBERON:0002372 ! tonsil + +[Term] +id: UBERON:0010424 +name: distal segment of rib +comment: The distal rib derives from both somite halves[PMID:15906248] +synonym: "distal part of rib" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/15906248] +synonym: "distal rib" EXACT [MA:0001397] +synonym: "distal rib segment" EXACT [] +synonym: "sternal rib" NARROW [] +synonym: "vertical segment of rib" NARROW [] +xref: EMAPA:37492 {source="MA:th"} +xref: MA:0001397 +xref: MA:0001418 +is_a: UBERON:0005055 ! zone of long bone +relationship: part_of UBERON:0002228 {source="MA"} ! rib + +[Term] +id: UBERON:0010425 +name: internal naris +def: "A naris that is located inside the nasal cavity and connects to the pharynx." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "choana" EXACT [] +synonym: "choanae" RELATED PLURAL [] +synonym: "internal choana" EXACT [] +synonym: "internal nares" RELATED PLURAL [] +synonym: "internal nostril" RELATED [] +xref: NCIT:C32856 +is_a: UBERON:0000003 ! naris +intersection_of: UBERON:0000003 ! naris +intersection_of: connects UBERON:0001707 ! nasal cavity +intersection_of: connects UBERON:0006562 ! pharynx +relationship: connects UBERON:0006562 ! pharynx +relationship: fma_set_term FMA:76585 + +[Term] +id: UBERON:0010426 +name: oropharyngeal choana +def: "opening/conduit between the nasal cavity and the oropharynx via the roof of the mouth." [https://orcid.org/0000-0002-6601-2165] +synonym: "apertura nasalis interna" RELATED [AAO:0000025] +synonym: "choana of oropharynx" EXACT [] +synonym: "cleft palate" RELATED [] +synonym: "oropharyngeal naris" EXACT [] +synonym: "palatal choana" EXACT [] +synonym: "palatal cleft" RELATED [] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010425 ! internal naris +intersection_of: UBERON:0010425 ! internal naris +intersection_of: connects UBERON:0001707 ! nasal cavity +intersection_of: connects UBERON:0001729 ! oropharynx +intersection_of: part_of UBERON:0001716 ! secondary palate +relationship: connects UBERON:0001729 ! oropharynx +relationship: part_of UBERON:0001716 ! secondary palate + +[Term] +id: UBERON:0010427 +name: ciliary processes +def: "The ciliary processes are formed by the inward folding of the various layers of the choroid, i.e. , the choroid proper and the lamina basalis, and are received between corresponding foldings of the suspensory ligament of the lens." [http://en.wikipedia.org/wiki/Ciliary_processes] +synonym: "ciliary process" RELATED [http://en.wikipedia.org/wiki/Ciliary_processes] +synonym: "ciliary processes" EXACT [FMA:76551] +synonym: "ciliary processes set" EXACT [FMA:76551] +synonym: "processus ciliares" EXACT LATIN [FMA:TA] +synonym: "processus ciliares" RELATED LATIN [http://en.wikipedia.org/wiki/Ciliary_processes] +synonym: "set of ciliary processes" EXACT [FMA:76551] +xref: Ciliary:processes +xref: FMA:76551 +xref: http://www.snomedbrowser.com/Codes/Details/280860001 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001775 ! ciliary body + +[Term] +id: UBERON:0010428 +name: flat bone +def: "A bone that is shaped as a broad flat plate and composed of two thin layers of compact tissue enclosing between them a variable quantity of cancellous tissue, which is the location of red bone marrow." [http://en.wikipedia.org/wiki/Flat_bone] +comment: Examples: cranium, the ilium, sternum, rib cage, the sacrum and the scapula; the occipital, parietal, frontal, nasal, lacrimal, vomer, scapula, os coxC&, sternum, and ribs +synonym: "os planum" RELATED LATIN [http://en.wikipedia.org/wiki/Flat_bone] +xref: Flat:bone +xref: FMA:7476 +xref: galen:FlatBone +xref: http://linkedlifedata.com/resource/umls/id/C0222649 +xref: http://www.snomedbrowser.com/Codes/Details/332907008 +xref: NCIT:C32616 +xref: UMLS:C0222649 {source="ncithesaurus:Flat_Bone"} +is_a: UBERON:0001474 {source="FMA"} ! bone element + +[Term] +id: UBERON:0010437 +name: zygomaticus muscle +def: "One of: zygomaticus major, zygomaticus minor" [https://orcid.org/0000-0002-6601-2165] +comment: origin: posterior braincase +subset: grouping_class +synonym: "m. levator nasii" RELATED [] +synonym: "m. zygomaticus" EXACT [] +synonym: "zygomaticus" EXACT [MA:0002404] +xref: EMAPA:37703 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1710708 +xref: MA:0002404 +xref: NCIT:C53182 +xref: UMLS:C1710708 {source="ncithesaurus:Zygomaticus"} +is_a: UBERON:0001577 {source="MFMO-abduced"} ! facial muscle +union_of: UBERON:0008593 ! zygomaticus major muscle +union_of: UBERON:0008594 ! zygomaticus minor muscle +relationship: has_muscle_origin UBERON:0001683 {source="Wikipedia"} ! jugal bone + +[Term] +id: UBERON:0010467 +name: teres muscle +synonym: "teres" EXACT [] +xref: EMAPA:36155 +xref: http://linkedlifedata.com/resource/umls/id/C1515272 +xref: http://www.snomedbrowser.com/Codes/Details/277440006 +xref: NCIT:C33752 +xref: UMLS:C1515272 {source="ncithesaurus:Teres_Muscle"} +is_a: UBERON:0001482 ! muscle of shoulder +is_a: UBERON:0034908 ! scapular muscle + +[Term] +id: UBERON:0010496 +name: teres minor muscle +def: "A narrow, elongated muscle of the rotator cuff" [http://en.wikipedia.org/wiki/Teres_minor_muscle] +comment: Dorsal group[Kardong] +subset: pheno_slim +synonym: "musculus teres minor" RELATED LATIN [http://en.wikipedia.org/wiki/Teres_minor_muscle] +synonym: "teres minor" EXACT [FMA:32550] +xref: EMAPA:36156 +xref: FMA:32550 +xref: http://en.wikipedia.org/wiki/Teres_minor_muscle +xref: http://linkedlifedata.com/resource/umls/id/C0224231 +xref: http://www.snomedbrowser.com/Codes/Details/277445001 +xref: NCIT:C33751 +xref: UMLS:C0224231 {source="ncithesaurus:Teres_Minor_Muscle"} +is_a: UBERON:0010467 ! teres muscle +is_a: UBERON:0010891 ! pectoral complex muscle +relationship: has_muscle_insertion UBERON:0000976 {notes="inferior facet of greater tubercle of the humerus", source="dbpedia"} ! humerus +relationship: has_muscle_origin UBERON:0007173 {notes="lateral border of the scapula", source="dbpedia"} ! lateral border of scapula +relationship: innervated_by UBERON:0001493 {source="dbpedia"} ! axillary nerve +relationship: part_of UBERON:0003683 {source="Wikipedia"} ! rotator cuff + +[Term] +id: UBERON:0010498 +name: pseudostratified columnar epithelium +def: "A simple columnar epithelium that looks stratified but is not, because its cells are arranged with their nuclei at different levels." [http://en.wikipedia.org/wiki/Pseudostratified_columnar_epithelium, http://medical-dictionary.thefreedictionary.com/pseudostratified+epithelium] +xref: FMA:45572 +xref: http://en.wikipedia.org/wiki/Pseudostratified_columnar_epithelium +xref: http://linkedlifedata.com/resource/umls/id/C0836138 +xref: http://linkedlifedata.com/resource/umls/id/C1514590 +xref: NCIT:C33419 +xref: NCIT:C49316 +xref: UMLS:C0836138 {source="ncithesaurus:Pseudostratified_Columnar_Epithelium"} +xref: UMLS:C1514590 {source="ncithesaurus:Pseudostratified_Epithelium"} +is_a: UBERON:0000485 {source="FMA"} ! simple columnar epithelium + +[Term] +id: UBERON:0010499 +name: pseudostratified ciliated columnar epithelium +def: "Epithelium composed of a single layer of cells, appearing as layered because the column-shaped cells vary in height so the nuclei are at different levels. The basal portions of all the cells are in contact with the basement membrane. It lines the respiratory system and the male reproductive tract. The cilia in the respiratory tract are motile, while the stereocilia in the male reproductive tract are immobile." [NCIT:NCIT] +synonym: "epithelium pseudostratificatum columnare ciliatum (trachea et bronchi)" EXACT [FMA:13146] +xref: FMA:13146 +xref: http://linkedlifedata.com/resource/umls/id/C0506992 +xref: NCIT:C13181 +xref: UMLS:C0506992 {source="ncithesaurus:Pseudostratified_Columnar_Ciliated_Epithelium"} +is_a: UBERON:0007592 ! ciliated columnar epithelium +is_a: UBERON:0010498 ! pseudostratified columnar epithelium +disjoint_from: UBERON:0010501 ! pseudostratified smooth columnar epithelium + +[Term] +id: UBERON:0010501 +name: pseudostratified smooth columnar epithelium +synonym: "non-ciliated pseudostratified columnar epithelia" RELATED [] +xref: FMA:72059 +is_a: UBERON:0010498 {source="FMA"} ! pseudostratified columnar epithelium + +[Term] +id: UBERON:0010504 +name: obsolete round ligament +is_obsolete: true +consider: NCIT:C12319 +consider: UBERON:0006588 +consider: UBERON:0006589 + +[Term] +id: UBERON:0010505 +name: periosteal dura mater +def: "The outermost of the two layers of the cranial dura mater which normally always adheres to the periosteum of the bones of the cranial vault" [https://orcid.org/0000-0002-6601-2165] +synonym: "endosteal layer of dura mater" RELATED [FMA:231547] +synonym: "outer layer of dura mater" EXACT [FMA:231547] +synonym: "outer periosteal layer of dura mater" EXACT [] +synonym: "periosteal dura" EXACT [FMA:231547] +synonym: "periosteal layer of dura mater" EXACT [FMA:231547] +xref: FMA:231547 +xref: http://linkedlifedata.com/resource/umls/id/C1518991 +xref: NCIT:C33306 +xref: UMLS:C1518991 {source="ncithesaurus:Periosteal_Layer_of_the_Dura_Mater"} +is_a: UBERON:0010507 {source="FMA"} ! layer of dura mater +relationship: adjacent_to UBERON:0002515 ! periosteum +relationship: adjacent_to UBERON:0003129 ! skull +relationship: part_of UBERON:0002092 ! brain dura mater + +[Term] +id: UBERON:0010506 +name: meningeal dura mater +def: "The inner layer of the dura mater surrounding the brain. It is mostly fused with the outer layer, the endocranium that is adherent to the inner aspect of the cranial bones. These two layers form the dura mater. The latter covers and protects the brain and the spinal cord." [ncithesaurus:Meningeal_Layer_of_the_Dura_Mater] +synonym: "inner layer of dura mater" EXACT [FMA:231549] +synonym: "meningeal dura" EXACT [FMA:231549] +synonym: "meningeal layer of dura mater" EXACT [FMA:231549] +xref: FMA:231549 +xref: http://linkedlifedata.com/resource/umls/id/C1513121 +xref: NCIT:C33093 +xref: UMLS:C1513121 {source="ncithesaurus:Meningeal_Layer_of_the_Dura_Mater"} +is_a: UBERON:0010507 {source="FMA"} ! layer of dura mater +relationship: protects UBERON:0001017 ! central nervous system + +[Term] +id: UBERON:0010507 +name: layer of dura mater +def: "The intracranial dura mater, consisting of two layers: the outer periosteal layer which normally always adheres to the periosteum of the bones of the cranial vault; and the inner meningeal layer which in most places is fused with the outer. The two layers separate to accommodate meningeal vessels and large venous (dural) sinuses. The meningeal layer is also involved in the formation of the various dural folds, such as the falx cerebri and tentorium cerebelli and is comparable to and continuous with the dural mater of the spinal cord. The cranial epidural space is then a potential space between the bone and the combined periosteum/periosteal layer of the dura mater realised only pathologically and is neither continuous with or comparable to the vertebral epidural space" [http://www.mondofacto.com/facts/dictionary?periosteal+layer+of+dura+mater] +xref: FMA:231545 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004923 {source="FMA"} ! organ component layer +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002363 {source="FMA"} ! dura mater + +[Term] +id: UBERON:0010509 +name: strand of pelage hair +def: "A strand of hair that is part of a coat of hair." [OBOL:automatic] +synonym: "pelage hair" EXACT [MA:0001897] +xref: EMAPA:36485 +xref: MA:0001897 +is_a: UBERON:0001037 ! strand of hair +intersection_of: UBERON:0001037 ! strand of hair +intersection_of: part_of UBERON:0010166 ! coat of hair +relationship: part_of UBERON:0010166 ! coat of hair + +[Term] +id: UBERON:0010510 +name: strand of auchene hair +def: "A truncal hair that has a single constriction and bend about midway along the hair shaft, and contains two or more air cells in the medulla" [MP:0000405] +subset: pheno_slim +synonym: "auchene hair" EXACT [MA:0001893] +xref: EMAPA:36527 +xref: MA:0001893 +is_a: UBERON:0010509 {source="MA"} ! strand of pelage hair + +[Term] +id: UBERON:0010511 +name: strand of awl hair +def: "A truncal hairs that is straight, but shorter than a guard hair, and contain two or more air cells in the medulla" [http://en.wikipedia.org/wiki/Awn_hair, MP:0000400] +subset: pheno_slim +synonym: "awl hair" EXACT [MA:0001894] +xref: Awn:hair +xref: EMAPA:36639 +xref: MA:0001894 +is_a: UBERON:0010509 {source="MA"} ! strand of pelage hair + +[Term] +id: UBERON:0010512 +name: strand of guard hair +def: "A long, straight truncal hair that contains two air cells in the medulla[MP]. A strand of hair from the top layer consisting of longer, often coarser, straight shafts of hair that stick out through the underfur. This is usually the visible layer for most mammals and contains most of the pigmentation." [http://en.wikipedia.org/wiki/Guard_hair, MP:0006365] +subset: pheno_slim +synonym: "guard hair" EXACT [MA:0001896] +synonym: "guardhair" EXACT [] +synonym: "monotrich hair" EXACT [https://doi.org/10.1016/j.cub.2008.12.005] +xref: EMAPA:36528 +xref: Guard:hair +xref: MA:0001896 +is_a: UBERON:0010509 {source="MA"} ! strand of pelage hair + +[Term] +id: UBERON:0010513 +name: strand of zigzag hair +def: "A truncal hair that has two or more sharp bends with diameter constrictions at the bends, and contain one air cell in the medulla." [MP:0006366] +subset: pheno_slim +synonym: "zigzag hair" EXACT [MA:0001898] +xref: EMAPA:36640 +xref: MA:0001898 +is_a: UBERON:0010509 {source="MA"} ! strand of pelage hair +is_a: UBERON:0016447 ! hair of trunk + +[Term] +id: UBERON:0010514 +name: strand of duvet hair +def: "A strand of hair from the fine underhair of the coat" [MP:0000408] +subset: pheno_slim +synonym: "duvet hair" EXACT [MA:0001895] +xref: MA:0001895 +is_a: UBERON:0001037 {source="MA"} ! strand of hair + +[Term] +id: UBERON:0010515 +name: brille +def: "A layer of transparent, immovable disc-shaped skin or scale covering the eyes of some animals for protection, especially in animals without eyelids. The brille has evolved from a fusion of the upper and lower eyelids." [http://en.wikipedia.org/wiki/Brille] +comment: there are transitional stages between total lid loss and full brille formation (Bellairs & Boyd, 1947). +synonym: "eye cap" RELATED [] +synonym: "ocular scale" RELATED [] +xref: http://en.wikipedia.org/wiki/Brille +is_a: UBERON:1000021 ! skin of face +relationship: has_fused_element UBERON:0001712 ! upper eyelid +relationship: has_fused_element UBERON:0001713 ! lower eyelid +relationship: part_of UBERON:0000019 ! camera-type eye + +[Term] +id: UBERON:0010516 +name: clasper +def: "A male anatomical structure found some groups of animals, used in mating. Male cartilaginous fish have claspers formed from the posterior portion of their pelvic fin which serve as intromittent organs used to channel semen into the female's cloaca during mating. The act of mating in some fish including sharks usually includes one of the claspers raised to allow water into the siphon through a specific orifice. The clasper is then inserted into the vagina, where it opens like an umbrella to anchor its position. The siphon then begins to contract expelling water and sperm. Male chimaeras have cephalic claspers on their heads, which are thought to aid in holding the female during mating" [http://en.wikipedia.org/wiki/clasper] +xref: http://en.wikipedia.org/wiki/clasper +is_a: UBERON:0008811 {source="Wikipedia"} ! intromittent organ + +[Term] +id: UBERON:0010517 +name: cephalic clasper +def: "A mace-like spiny-headed rod found on the mid-dorsal surface of heads of male Holocephali. Thought to aid in holding the female during copulation." [http://en.wikipedia.org/wiki/Chimaera#Description_and_tastes, http://fishbase.org/glossary/Glossary.php?q=tenaculum, http://www.fishbase.org/glossary/Glossary.php?q=cephalic+clasper] +synonym: "anterior tenaculum" RELATED [] +synonym: "head clasper" RELATED [http://www.fishbase.org/glossary/Glossary.php?q=head+clasper] +synonym: "tenaculum" RELATED [] +xref: Description_and_tastes +is_a: UBERON:0010516 ! clasper +intersection_of: UBERON:0010516 ! clasper +intersection_of: part_of UBERON:0000033 ! head +relationship: intersects_midsagittal_plane_of UBERON:0000033 ! head +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0010518 +name: pelvic fin clasper +def: "The rod-like extension of the medial portion of the pelvic fin in male Elasmobranchii and Holocephali. Claspers are used as intromittent organs (not in clasping), the grooves on their facing surfaces together forming a tube for the transmission of sperm when the claspers are held together. The anterior proximal opening is called the apopyle, the posterior distal opening the rhipidion" [http://fishbase.org/Glossary/Glossary.php?q=clasper] +synonym: "clasper" RELATED [] +synonym: "myxopterygium" EXACT [http://fishbase.org/Glossary/Glossary.php?q=clasper] +is_a: UBERON:0010516 ! clasper +intersection_of: UBERON:0010516 ! clasper +intersection_of: part_of UBERON:0000152 ! pelvic fin +relationship: part_of UBERON:0000152 ! pelvic fin + +[Term] +id: UBERON:0010519 +name: tail electric organ +def: "An electric organ that is part of a tail." [OBOL:automatic] +synonym: "electric organ of tail" EXACT [] +xref: BTO:0000376 +is_a: UBERON:0006869 ! electric organ +intersection_of: UBERON:0006869 ! electric organ +intersection_of: part_of UBERON:0002415 ! tail +relationship: part_of UBERON:0002415 {source="BTO"} ! tail + +[Term] +id: UBERON:0010520 +name: head electric organ +def: "An electric organ that is part of a head." [OBOL:automatic] +is_a: UBERON:0006869 ! electric organ +intersection_of: UBERON:0006869 ! electric organ +intersection_of: part_of UBERON:0000033 ! head +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0010521 +name: electroreceptor organ +def: "An organ that is capable of detecting electrical stimulus" [http://orcid.org/0000-0002-6601-2165] +synonym: "electric sense organ" EXACT [] +synonym: "electroreception organ" EXACT [] +is_a: UBERON:0000020 ! sense organ + +[Term] +id: UBERON:0010522 +name: replacement element +def: "Skeletal element that forms as a replacement or substitution of another element or tissue." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000135] +xref: VSAO:0000135 +xref: XAO:0004016 +xref: ZFA:0005624 +is_a: UBERON:0004765 {source="VSAO"} ! skeletal element +relationship: part_of UBERON:0010362 {source="cjm"} ! endoskeleton + +[Term] +id: UBERON:0010523 +name: microcirculatory vessel +def: "A vessel of the microcirculature, lying between the arterioles and venules; includes capillaries (blood and lymphatic), metarterioles and arteriovenous anastomoses." [http://orcid.org/0000-0002-6601-2165, MESH:A07.231.432, ZFA:0005251] +synonym: "microcirculatory vessels" RELATED PLURAL [TAO:0005251] +xref: MESH:A07.231.432 +xref: TAO:0005251 +xref: ZFA:0005251 +is_a: UBERON:0000055 ! vessel +relationship: part_of UBERON:0002049 {source="ZFA"} ! vasculature + +[Term] +id: UBERON:0010524 +name: fibularis tertius +def: "A muscle located in the lower limb that arises from the lower third of the anterior surface of the fibula; from the lower part of the interosseous membrane; and from an intermuscular septum between it and the peroneus brevis and inserted into the dorsal surface of the base of the metatarsal bone of the 5th digit. It is innervated by the deep fibular nerve. Its action is that of weak dorsiflexion of the ankle joint and to evert the foot at the ankle joint." [http://en.wikipedia.org/wiki/Peroneus_tertius_muscle, https://doi.org/10.3389/fevo.2018.00053] +subset: pheno_slim +synonym: "fibularis tertius" RELATED [http://en.wikipedia.org/wiki/Peroneus_tertius] +synonym: "fibularis tertius muscle" RELATED [http://en.wikipedia.org/wiki/Peroneus_tertius] +synonym: "musculus peroneus tertius" EXACT LATIN [FMA:TA] +synonym: "peronaeus tertius" RELATED [http://en.wikipedia.org/wiki/Peroneus_tertius] +synonym: "peroneus digit V" RELATED [EMAPA:36261] +synonym: "peroneus digiti minimi" RELATED [EMAPA:36261] +synonym: "peroneus digiti quinti" EXACT [EMAPA:36261] +synonym: "peroneus tertius" EXACT [FMA:22538] +synonym: "peroneus tertius" EXACT [http://en.wikipedia.org/wiki/Peroneus_tertius] +synonym: "peroneus tertius muscle" EXACT [http://en.wikipedia.org/wiki/Peroneus_tertius] +xref: EMAPA:36261 +xref: FMA:22538 +xref: http://en.wikipedia.org/wiki/Peroneus_tertius_muscle +xref: http://www.snomedbrowser.com/Codes/Details/181701000 +is_a: UBERON:0009132 ! peroneus +relationship: has_muscle_insertion UBERON:0003654 ! metatarsal bone of digit 5 + +[Term] +id: UBERON:0010526 +name: fibularis brevis +def: "The peroneus brevis muscle (or fibularis brevis) lies under cover of the peroneus longus, and is a shorter and smaller muscle." [http://en.wikipedia.org/wiki/Peroneus_brevis] +subset: pheno_slim +synonym: "fibularis brevis" RELATED [http://en.wikipedia.org/wiki/Peroneus_brevis] +synonym: "musculus peroneus brevis" EXACT LATIN [FMA:TA] +synonym: "peronaeus brevis" EXACT [http://en.wikipedia.org/wiki/Peroneus_brevis] +synonym: "peroneus brevis" EXACT [FMA:22540] +synonym: "peroneus brevis muscle" EXACT [http://en.wikipedia.org/wiki/Peroneus_brevis] +synonym: "peronius brevis" RELATED [http://en.wikipedia.org/wiki/Peroneus_brevis] +xref: EMAPA:36252 +xref: FMA:22540 +xref: http://www.snomedbrowser.com/Codes/Details/181704008 +xref: Peroneus:brevis +is_a: UBERON:0009132 ! peroneus +relationship: has_muscle_insertion UBERON:0003654 ! metatarsal bone of digit 5 + +[Term] +id: UBERON:0010527 +name: cavity of bone organ +def: "An organ cavity that surrounded_by a bone." [OBOL:automatic] +synonym: "bone organ cavity" EXACT [FMA:24021] +xref: FMA:24021 +is_a: UBERON:0002558 ! organ cavity +intersection_of: UBERON:0002558 ! organ cavity +intersection_of: part_of UBERON:0001474 ! bone element +relationship: part_of UBERON:0001474 ! bone element + +[Term] +id: UBERON:0010528 +name: pneumatic cavity of bone +synonym: "air space of bone" EXACT [FMA:24028] +xref: FMA:24028 +is_a: UBERON:0010527 {source="FMA"} ! cavity of bone organ +relationship: part_of UBERON:0008193 ! pneumatized bone + +[Term] +id: UBERON:0010531 +name: metanephros induced blastemal cells +def: "." [http://www.embryology.ch/anglais/turinary/urinhaute03.html] +synonym: "cap mesenchyme of metanephros of urinary system" RELATED [EMAPA:17645] +synonym: "induced blastemal cells" EXACT [VHOG:0001241] +synonym: "nephrogenic interstitium" RELATED [] +synonym: "nephrogenic interstitium of nephrogenic zone" EXACT [EMAPA:17953] +synonym: "peripheral blastema" RELATED [EMAPA:17953] +xref: EHDAA2:0001143 +xref: EHDAA:7007 +xref: EHDAA:8105 +xref: EMAPA:17953 +xref: EMAPA:27621 +xref: MA:0002998 +xref: VHOG:0001241 +is_a: UBERON:0005423 ! developing anatomical structure +relationship: developmentally_induced_by UBERON:0000084 ! ureteric bud +relationship: develops_from UBERON:0003220 {source="EHDAA2"} ! metanephric mesenchyme +relationship: part_of UBERON:0009871 ! nephrogenic zone + +[Term] +id: UBERON:0010532 +name: primitive nephron +def: "An epithelial tube that is fated to become a nephron." [http://orcid.org/0000-0002-6601-2165] +synonym: "developing nephron" BROAD [] +synonym: "future nephron" EXACT [] +synonym: "presumptive nephron" EXACT [] +synonym: "primitive nephron" BROAD [] +is_a: UBERON:0003914 {source="EHDAA2-inferred"} ! epithelial tube +is_a: UBERON:0004819 ! kidney epithelium +is_a: UBERON:0006555 ! excretory tube +relationship: develops_from UBERON:0004209 {source="EHDAA2"} ! renal vesicle +relationship: has_potential_to_develop_into UBERON:0001285 ! nephron +relationship: located_in UBERON:0003918 ! kidney mesenchyme + +[Term] +id: UBERON:0010533 +name: metanephros cortex +def: "The metanephric cortex is the outer region of the metanephros[GO]." [GO:0072214] +xref: VHOG:0000714 +is_a: UBERON:0001225 ! cortex of kidney +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001225 ! cortex of kidney +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: develops_from UBERON:0005113 ! metanephric cortex mesenchyme +relationship: part_of UBERON:0000081 {source="VHOG"} ! metanephros + +[Term] +id: UBERON:0010534 +name: primitive mesonephric nephron +def: "Anatomical cluster which give rise to mature mesonephric nephrons. Zebrafish continously generate new mesonephric nephrons." [GOC:cvs, ORCiD:0000-0002-2244-7917, ZFA:0005584] +synonym: "developing mesonephric nephron" EXACT [ZFA:0005584] +synonym: "primitive mesonephric nephron" EXACT [] +xref: ZFA:0005584 +is_a: UBERON:0000083 ! mesonephric tubule +is_a: UBERON:0010532 ! primitive nephron +intersection_of: UBERON:0010532 ! primitive nephron +intersection_of: part_of UBERON:0000080 ! mesonephros + +[Term] +id: UBERON:0010535 +name: primitive metanephric nephron +def: "A primitive nephron that is part of a metanephros." [OBOL:automatic] +synonym: "developing metanephric nephron" EXACT [] +synonym: "primitive metanephric nephron" EXACT [] +synonym: "primitive nephron" BROAD [EHDAA2:0001516] +xref: EHDAA2:0001516 +is_a: UBERON:0005106 ! metanephric tubule +is_a: UBERON:0010532 ! primitive nephron +intersection_of: UBERON:0010532 ! primitive nephron +intersection_of: part_of UBERON:0000081 ! metanephros +relationship: part_of UBERON:0005113 {source="EHDAA2"} ! metanephric cortex mesenchyme + +[Term] +id: UBERON:0010536 +name: nephron progenitor +is_a: UBERON:0000479 {source="ZFA"} ! tissue +relationship: has_potential_to_develop_into UBERON:0001285 ! nephron +relationship: part_of UBERON:0003918 {source="cjm"} ! kidney mesenchyme + +[Term] +id: UBERON:0010537 +name: mesonephric nephron progenitor +def: "Cluster of cells comprising a portion of tissue which gives rise to new mesonephric nephrons. The cluster contains self-renewing stem cells." [ZFA:0005587] +xref: ZFA:0005587 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010536 ! nephron progenitor +intersection_of: UBERON:0010536 ! nephron progenitor +intersection_of: part_of UBERON:0000080 ! mesonephros +relationship: part_of UBERON:0000080 ! mesonephros + +[Term] +id: UBERON:0010538 +name: paired limb/fin segment +def: "An appendage segment that is part of a limb/fin." [OBOL:automatic] +subset: homology_grouping +synonym: "limb/fin segment" EXACT [] +is_a: UBERON:0010758 ! subdivision of organism along appendicular axis +intersection_of: UBERON:0010758 ! subdivision of organism along appendicular axis +intersection_of: part_of UBERON:0004708 ! paired limb/fin +disjoint_from: UBERON:0010912 ! subdivision of skeleton +relationship: part_of UBERON:0004708 ! paired limb/fin + +[Term] +id: UBERON:0010540 +name: tarsus pre-cartilage condensation +def: "A pre-cartilage condensation that has the potential to develop into a tarsal bone." [OBOL:automatic] +xref: EHDAA2:0001978 +is_a: UBERON:0003328 ! mesenchyme of footplate +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0010695 ! mesenchyme of tarsal region +is_a: UBERON:0015050 ! tarsus endochondral element +intersection_of: UBERON:0005866 ! pre-cartilage condensation +intersection_of: has_potential_to_develop_into UBERON:0001447 ! tarsal bone +relationship: has_potential_to_develop_into UBERON:0001447 ! tarsal bone + +[Term] +id: UBERON:0010541 +name: tarsus cartilage element +def: "A cartilaginous condensation that has the potential to develop into a tarsal bone." [OBOL:automatic] +xref: EHDAA2:0001977 +is_a: UBERON:0003328 ! mesenchyme of footplate +is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010695 ! mesenchyme of tarsal region +is_a: UBERON:0015050 ! tarsus endochondral element +intersection_of: UBERON:0005863 ! cartilaginous condensation +intersection_of: has_potential_to_develop_into UBERON:0001447 ! tarsal bone +relationship: develops_from UBERON:0010540 {source="EHDAA2"} ! tarsus pre-cartilage condensation +relationship: has_potential_to_develop_into UBERON:0001447 ! tarsal bone + +[Term] +id: UBERON:0010543 +name: acropodial skeleton +def: "The subdivision of the skeleton that consists of all the skeletal elements at the distalmost end of the autopodium - i.e. the bones of the digits or their cartilaginous precursors[VSAO,modified]." [https://orcid.org/0000-0002-6601-2165, VSAO:0005028, VSAO:NI] +synonym: "acropodial skeleton" EXACT [] +synonym: "acropodium" RELATED [VSAO:0005028, VSAO:NI] +synonym: "acropodium skeleton" EXACT [] +synonym: "digital skeleton" RELATED [] +synonym: "digits skeleton" RELATED [] +synonym: "phalangeal skeleton" RELATED [] +synonym: "set of phalanges" EXACT [FMA:231315] +synonym: "skeletal parts of acropodial region" EXACT [] +synonym: "skeletal parts of acropodium" RELATED [] +synonym: "skeleton of digits" RELATED [] +xref: FMA:231315 +xref: VSAO:0005028 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010712 ! limb skeleton subdivision +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0012354 ! acropodium region +relationship: has_part UBERON:0015023 ! phalanx endochondral element +relationship: part_of UBERON:0012150 {source="PHENOSCAPE:ni"} ! skeleton of digitopodium +relationship: part_of UBERON:0012354 ! acropodium region +relationship: proximally_connected_to UBERON:0010546 ! metapodial skeleton +relationship: skeleton_of UBERON:0012354 ! acropodium region + +[Term] +id: UBERON:0010544 +name: metacarpus skeleton +def: "The metacarpus is the intermediate part of the manus skeleton that is located between the phalanges (bones of the fingers) distally and the carpus which forms the connection to the forearm. The metacarpus consists of metacarpal bones. The metacarpals form a transverse arch to which the rigid row of distal carpal bones are fixed. The peripheral metacarpals (those of the thumb and little finger) form the sides of the cup of the palmar gutter and as they are brought together they deepen this concavity. The index metacarpal is the most firmly fixed, while the thumb metacarpal articulates with the trapezium and acts independently from the others. The middle metacarpals are tightly united to the carpus by intrinsic interlocking bone elements at their bases. The ring metacarpal forms a transitional element of the semi-independent last metacarpal. [WP,unvetted]." [http://en.wikipedia.org/wiki/Metacarpus] +synonym: "anterior metapodial skeleton" EXACT [] +synonym: "anterior metapodium" RELATED [VSAO:0005026, VSAO:NI] +synonym: "fore metapodial skeleton" RELATED [] +synonym: "fore metapodium" RELATED [AAO:0000946, http://en.wiktionary.org/wiki/metapodial, MA:th] +synonym: "metacarpal bones" EXACT [FMA:71336] +synonym: "metacarpal skeleton" EXACT [] +synonym: "metacarpalia" RELATED LATIN [http://en.wikipedia.org/wiki/Metacarpus] +synonym: "metacarpals [I-V]" EXACT [FMA:71336] +synonym: "metacarpals set" EXACT [FMA:71336] +synonym: "ossa metacarpalia [I-V]" EXACT LATIN [FMA:71336, FMA:TA] +synonym: "ossa metacarpi [I-V]" EXACT LATIN [FMA:71336, FMA:TA] +synonym: "set of metacarpal bones" EXACT [FMA:71336] +synonym: "set of metacarpals" EXACT [FMA:71336] +synonym: "set of metacarpals [I-V]" EXACT [FMA:71336] +synonym: "skeleton of metacarpus" EXACT [] +xref: AAO:0000946 +xref: EMAPA:36158 +xref: FMA:71336 +xref: http://en.wikipedia.org/wiki/Metacarpus +xref: MESH:A02.835.232.087.535 +xref: VSAO:0005026 +xref: XAO:0003208 +is_a: UBERON:0010546 ! metapodial skeleton +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0004453 ! metacarpus region +disjoint_from: UBERON:0010545 {source="lexical"} ! metatarsus skeleton +relationship: develops_from UBERON:0010699 {notes="many to one"} ! manual digit metacarpus cartilage element +relationship: proximally_connected_to UBERON:0009880 ! carpal skeleton +relationship: skeleton_of UBERON:0004453 ! metacarpus region + +[Term] +id: UBERON:0010545 +name: metatarsus skeleton +def: "Limb segment that consists of the long bones of the pes. The metatarsals are analogous to the metacarpal bones of the manus." [http://en.wikipedia.org/wiki/Metatarsus] +synonym: "metatarsal bones set" EXACT [FMA:71340] +synonym: "metatarsal skeleton" EXACT [] +synonym: "metatarsalia" RELATED [] +synonym: "metatarsals [I-V]" EXACT [FMA:71340] +synonym: "ossa metatarsalia" RELATED LATIN [http://en.wikipedia.org/wiki/Metatarsus] +synonym: "ossa metatarsalia [I-V]" EXACT LATIN [FMA:71340, FMA:TA] +synonym: "ossa metatarsi[I-V]" EXACT LATIN [FMA:71340, FMA:TA] +synonym: "posterior metapodial skeleton" EXACT [] +synonym: "posterior metapodium" RELATED [VSAO:0005027, VSAO:NI] +synonym: "set of metatarsal bones" EXACT [FMA:71340] +synonym: "set of metatarsals [I-V]" EXACT [FMA:71340] +synonym: "skeleton of metatarsus" EXACT [] +xref: AAO:0000221 +xref: FMA:71340 +xref: http://en.wikipedia.org/wiki/Metatarsus +xref: MESH:D008684 +xref: OpenCyc:Mx4rva_rBJwpEbGdrcN5Y29ycA +xref: VSAO:0005027 +xref: XAO:0003212 +is_a: UBERON:0010546 ! metapodial skeleton +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0000983 ! metatarsus region +relationship: develops_from UBERON:0010697 {notes="many to one"} ! pedal digit metatarsal cartilage element +relationship: proximally_connected_to UBERON:0009879 ! tarsal skeleton +relationship: skeleton_of UBERON:0000983 ! metatarsus region + +[Term] +id: UBERON:0010546 +name: metapodial skeleton +def: "Subdivision of skeleton that corresponds to metapodium region, between acropodial skeleton and mesopdoial skeleton." [https://orcid.org/0000-0002-6601-2165] +synonym: "metacarpal/metatarsal skeleton" EXACT [] +synonym: "metapodial skeleton" EXACT [VSAO:0005025] +synonym: "metapodium" RELATED [VSAO:0005025, VSAO:NI] +synonym: "metapodium skeleton" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "skeletal parts of metapodium" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "skeleton of metapodium" EXACT [] +xref: VSAO:0005025 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010712 ! limb skeleton subdivision +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0009877 ! metapodium region +relationship: distally_connected_to UBERON:0010543 ! acropodial skeleton +relationship: part_of UBERON:0009877 ! metapodium region +relationship: part_of UBERON:0012150 {source="PHENOSCAPE:ni"} ! skeleton of digitopodium +relationship: proximally_connected_to UBERON:0009878 ! mesopodial skeleton +relationship: skeleton_of UBERON:0009877 ! metapodium region + +[Term] +id: UBERON:0010547 +name: pedal digit 1 metatarsal pre-cartilage condensation +def: "A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 1 mesenchyme." [OBOL:automatic] +synonym: "foot digit 1 metatarsal pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 1 metatarsal pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "pedal digit I metatarsal pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "toe 1 metatarsal pre-cartilage condensation" EXACT [EHDAA2:0002040] +xref: EHDAA2:0002040 +xref: EMAPA:17725 +is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015037 ! pedal digit 1 metatarsal endochondral element +intersection_of: UBERON:0015037 ! pedal digit 1 metatarsal endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010548 +name: pedal digit 2 metatarsal pre-cartilage condensation +def: "A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] +synonym: "foot digit 2 metatarsal pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 2 metatarsal pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "pedal digit II metatarsal pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "toe 2 metatarsal pre-cartilage condensation" EXACT [EHDAA2:0002045] +xref: EHDAA2:0002045 +xref: EMAPA:17727 +is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015038 ! pedal digit 2 metatarsal endochondral element +intersection_of: UBERON:0015038 ! pedal digit 2 metatarsal endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010549 +name: pedal digit 3 metatarsal pre-cartilage condensation +def: "A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] +synonym: "foot digit 3 metatarsal pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 3 metatarsal pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "pedal digit III metatarsal pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "toe 3 metatarsal pre-cartilage condensation" EXACT [EHDAA2:0002050] +xref: EHDAA2:0002050 +xref: EMAPA:17729 +is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015039 ! pedal digit 3 metatarsal endochondral element +intersection_of: UBERON:0015039 ! pedal digit 3 metatarsal endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010550 +name: pedal digit 4 metatarsal pre-cartilage condensation +def: "A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] +synonym: "foot digit 4 metatarsal pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 4 metatarsal pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "pedal digit IV metatarsal pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "toe 4 metatarsal pre-cartilage condensation" EXACT [EHDAA2:0002055] +xref: EHDAA2:0002055 +xref: EMAPA:17731 +is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015040 ! pedal digit 4 metatarsal endochondral element +intersection_of: UBERON:0015040 ! pedal digit 4 metatarsal endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010551 +name: pedal digit 5 metatarsal pre-cartilage condensation +def: "A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] +synonym: "foot digit 5 metatarsal pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 5 metatarsal pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "pedal digit V metatarsal pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "toe 5 metatarsal pre-cartilage condensation" EXACT [EHDAA2:0002060] +xref: EHDAA2:0002060 +xref: EMAPA:17733 +is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015041 ! pedal digit 5 metatarsal endochondral element +intersection_of: UBERON:0015041 ! pedal digit 5 metatarsal endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010557 +name: pedal digit 1 metatarsal cartilage element +def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 1 mesenchyme." [OBOL:automatic] +synonym: "foot digit 1 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 1 metatarsal cartilage condensation" EXACT [OBOL:accepted] +synonym: "pedal digit I metatarsal cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "toe 1 metatarsal cartilage condensation" EXACT [] +xref: EMAPA:18106 +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015037 ! pedal digit 1 metatarsal endochondral element +intersection_of: UBERON:0015037 ! pedal digit 1 metatarsal endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010547 ! pedal digit 1 metatarsal pre-cartilage condensation + +[Term] +id: UBERON:0010558 +name: pedal digit 2 metatarsal cartilage element +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] +synonym: "foot digit 2 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 2 metatarsal cartilage condensation" EXACT [OBOL:accepted] +synonym: "pedal digit II metatarsal cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "toe 2 metatarsal cartilage element" EXACT [] +xref: EMAPA:18111 +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015038 ! pedal digit 2 metatarsal endochondral element +intersection_of: UBERON:0015038 ! pedal digit 2 metatarsal endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010548 ! pedal digit 2 metatarsal pre-cartilage condensation + +[Term] +id: UBERON:0010559 +name: pedal digit 3 metatarsal cartilage element +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] +synonym: "foot digit 3 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 3 metatarsal cartilage condensation" EXACT [OBOL:accepted] +synonym: "pedal digit III metatarsal cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "toe 3 metatarsal cartilage element" EXACT [] +xref: EMAPA:18116 +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015039 ! pedal digit 3 metatarsal endochondral element +intersection_of: UBERON:0015039 ! pedal digit 3 metatarsal endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010549 ! pedal digit 3 metatarsal pre-cartilage condensation + +[Term] +id: UBERON:0010560 +name: pedal digit 4 metatarsal cartilage element +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] +synonym: "foot digit 4 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 4 metatarsal cartilage condensation" EXACT [OBOL:accepted] +synonym: "pedal digit IV metatarsal cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "toe 4 metatarsal cartilage element" EXACT [] +xref: EMAPA:18121 +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015040 ! pedal digit 4 metatarsal endochondral element +intersection_of: UBERON:0015040 ! pedal digit 4 metatarsal endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010550 ! pedal digit 4 metatarsal pre-cartilage condensation + +[Term] +id: UBERON:0010561 +name: pedal digit 5 metatarsal cartilage element +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] +synonym: "foot digit 5 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 5 metatarsal cartilage element" EXACT [OBOL:accepted] +synonym: "pedal digit V metatarsal cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "toe 5 metatarsal cartilage element" EXACT [] +xref: EMAPA:18126 +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015041 ! pedal digit 5 metatarsal endochondral element +intersection_of: UBERON:0015041 ! pedal digit 5 metatarsal endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010551 ! pedal digit 5 metatarsal pre-cartilage condensation + +[Term] +id: UBERON:0010562 +name: pedal digit 1 mesenchyme +def: "Mesenchyme that is part of a developing pedal digit 1." [OBOL:automatic] +synonym: "foot digit 1 mesenchyme" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 1 mesenchyme" EXACT [OBOL:accepted] +synonym: "pedal digit I mesenchyme" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EHDAA2:0002039 +xref: EMAPA:17462 +is_a: UBERON:0005255 ! pedal digit mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0003631 ! pedal digit 1 +relationship: part_of UBERON:0003631 ! pedal digit 1 + +[Term] +id: UBERON:0010564 +name: manual digit 1 mesenchyme +def: "Mesenchyme that is part of a developing manual digit 1." [OBOL:automatic] +synonym: "fore limb digit 1 mesenchyme" EXACT [OBOL:accepted] +synonym: "hand digit 1 mesenchyme" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit I mesenchyme" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EHDAA2:0000513 +xref: EMAPA:17431 +is_a: UBERON:0005257 ! manual digit mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0001463 ! manual digit 1 +relationship: part_of UBERON:0001463 ! manual digit 1 + +[Term] +id: UBERON:0010565 +name: manual digit 1 metacarpus pre-cartilage condensation +def: "A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 1 mesenchyme." [OBOL:automatic] +synonym: "finger 1 metacarpus pre-cartilage condensation" EXACT [EHDAA2:0000515] +synonym: "fore limb digit 1 metacarpus pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "hand digit 1 metacarpus pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit I metacarpus pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "metacarpal 1 pre-cartilage condensation" EXACT [] +xref: EHDAA2:0000515 +xref: EMAPA:17714 +is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015043 ! manual digit 1 metacarpus endochondral element +intersection_of: UBERON:0015043 ! manual digit 1 metacarpus endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010566 +name: manual digit 2 metacarpus pre-cartilage condensation +def: "A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 2 mesenchyme." [OBOL:automatic] +synonym: "finger 2 metacarpus pre-cartilage condensation" EXACT [EHDAA2:0000521] +synonym: "fore limb digit 2 metacarpus pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "hand digit 2 metacarpus pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit II metacarpus pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "metacarpal 2 pre-cartilage condensation" EXACT [] +xref: EHDAA2:0000521 +xref: EMAPA:17716 +is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015044 ! manual digit 2 metacarpus endochondral element +intersection_of: UBERON:0015044 ! manual digit 2 metacarpus endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010567 +name: manual digit 3 metacarpus pre-cartilage condensation +def: "A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 3 mesenchyme." [OBOL:automatic] +synonym: "finger 3 metacarpus pre-cartilage condensation" EXACT [EHDAA2:0000527] +synonym: "fore limb digit 3 metacarpus pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "hand digit 3 metacarpus pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit III metacarpus pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "metacarpal 3 pre-cartilage condensation" EXACT [] +xref: EHDAA2:0000527 +xref: EMAPA:17718 +is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015045 ! manual digit 3 metacarpus endochondral element +intersection_of: UBERON:0015045 ! manual digit 3 metacarpus endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010568 +name: manual digit 4 metacarpus pre-cartilage condensation +def: "A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 4 mesenchyme." [OBOL:automatic] +synonym: "finger 4 metacarpus pre-cartilage condensation" EXACT [EHDAA2:0000533] +synonym: "fore limb digit 4 metacarpus pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "hand digit 4 metacarpus pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit IV metacarpus pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "metacarpal 4 pre-cartilage condensation" EXACT [] +xref: EHDAA2:0000533 +xref: EMAPA:17720 +is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015046 ! manual digit 4 metacarpus endochondral element +intersection_of: UBERON:0015046 ! manual digit 4 metacarpus endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010569 +name: manual digit 5 metacarpus pre-cartilage condensation +def: "A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 5 mesenchyme." [OBOL:automatic] +synonym: "finger 5 metacarpus pre-cartilage condensation" EXACT [EHDAA2:0000539] +synonym: "fore limb digit 5 metacarpus pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "hand digit 5 metacarpus pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit V metacarpus pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "metacarpal 5 pre-cartilage condensation" EXACT [] +xref: EHDAA2:0000539 +xref: EMAPA:17722 +is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015047 ! manual digit 5 metacarpus endochondral element +intersection_of: UBERON:0015047 ! manual digit 5 metacarpus endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010570 +name: manual digit 1 metacarpus cartilage element +def: "A manual digit metacarpus cartilage element that is part of a manual digit 1 mesenchyme." [OBOL:automatic] +synonym: "finger 1 metacarpus cartilage element" EXACT [EHDAA2:0000514] +synonym: "fore limb digit 1 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 1 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit I metacarpus cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "metacarpus 1 cartilage element" EXACT [] +xref: EHDAA2:0000514 +xref: EMAPA:18065 +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015043 ! manual digit 1 metacarpus endochondral element +intersection_of: UBERON:0015043 ! manual digit 1 metacarpus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010565 ! manual digit 1 metacarpus pre-cartilage condensation + +[Term] +id: UBERON:0010571 +name: manual digit 2 metacarpus cartilage element +def: "A manual digit metacarpus cartilage element that is part of a manual digit 2 mesenchyme." [OBOL:automatic] +synonym: "finger 2 metacarpus cartilage element" EXACT [EHDAA2:0000520] +synonym: "fore limb digit 2 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 2 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit II metacarpus cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "metacarpus 2 cartilage element" EXACT [] +xref: EHDAA2:0000520 +xref: EMAPA:18070 +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015044 ! manual digit 2 metacarpus endochondral element +intersection_of: UBERON:0015044 ! manual digit 2 metacarpus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010566 ! manual digit 2 metacarpus pre-cartilage condensation + +[Term] +id: UBERON:0010572 +name: manual digit 3 metacarpus cartilage element +def: "A manual digit metacarpus cartilage element that is part of a manual digit 3 mesenchyme." [OBOL:automatic] +synonym: "finger 3 metacarpus cartilage element" EXACT [EHDAA2:0000526] +synonym: "fore limb digit 3 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 3 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit III metacarpus cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "metacarpus 3 cartilage element" EXACT [] +xref: EHDAA2:0000526 +xref: EMAPA:18075 +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015045 ! manual digit 3 metacarpus endochondral element +intersection_of: UBERON:0015045 ! manual digit 3 metacarpus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010567 ! manual digit 3 metacarpus pre-cartilage condensation + +[Term] +id: UBERON:0010573 +name: manual digit 4 metacarpus cartilage element +def: "A manual digit metacarpus cartilage element that is part of a manual digit 4 mesenchyme." [OBOL:automatic] +synonym: "finger 4 metacarpus cartilage condensation" EXACT [EHDAA2:0000532] +synonym: "fore limb digit 4 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 4 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit IV metacarpus cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "metacarpus 4 cartilage element" EXACT [] +xref: EHDAA2:0000532 +xref: EMAPA:18080 +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015046 ! manual digit 4 metacarpus endochondral element +intersection_of: UBERON:0015046 ! manual digit 4 metacarpus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010568 ! manual digit 4 metacarpus pre-cartilage condensation + +[Term] +id: UBERON:0010574 +name: manual digit 5 metacarpus cartilage element +def: "A manual digit metacarpus cartilage element that is part of a manual digit 5 mesenchyme." [OBOL:automatic] +synonym: "finger 5 metacarpus cartilage condensation" EXACT [EHDAA2:0000538] +synonym: "fore limb digit 5 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 5 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit V metacarpus cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "metacarpus 5 cartilage element" EXACT [] +xref: EHDAA2:0000538 +xref: EMAPA:18085 +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015047 ! manual digit 5 metacarpus endochondral element +intersection_of: UBERON:0015047 ! manual digit 5 metacarpus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010569 ! manual digit 5 metacarpus pre-cartilage condensation + +[Term] +id: UBERON:0010575 +name: manual digit 1 phalanx pre-cartilage condensation +def: "A pre-cartilage condensation that is part of a manual digit 1 mesenchyme." [OBOL:automatic] +synonym: "fore limb digit 1 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "hand digit 1 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit I phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EHDAA2:0000516 +xref: EMAPA:17715 +is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015025 ! manual digit 1 phalanx endochondral element +intersection_of: UBERON:0015025 ! manual digit 1 phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010576 +name: manual digit 2 phalanx pre-cartilage condensation +def: "A pre-cartilage condensation that is part of a manual digit 2 mesenchyme." [OBOL:automatic] +synonym: "fore limb digit 2 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "hand digit 2 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit II phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EHDAA2:0000522 +xref: EMAPA:17717 +is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015026 ! manual digit 2 phalanx endochondral element +intersection_of: UBERON:0015026 ! manual digit 2 phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010577 +name: manual digit 3 phalanx pre-cartilage condensation +def: "A pre-cartilage condensation that is part of a manual digit 3 mesenchyme." [OBOL:automatic] +synonym: "fore limb digit 3 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "hand digit 3 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit III phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EHDAA2:0000528 +xref: EMAPA:17719 +is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015027 ! manual digit 3 phalanx endochondral element +intersection_of: UBERON:0015027 ! manual digit 3 phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010578 +name: manual digit 4 phalanx pre-cartilage condensation +def: "A pre-cartilage condensation that is part of a manual digit 4 mesenchyme." [OBOL:automatic] +synonym: "fore limb digit 4 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "hand digit 4 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit IV phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EHDAA2:0000534 +xref: EMAPA:17721 +is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015028 ! manual digit 4 phalanx endochondral element +intersection_of: UBERON:0015028 ! manual digit 4 phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010579 +name: manual digit 5 phalanx pre-cartilage condensation +def: "A pre-cartilage condensation that is part of a manual digit 5 mesenchyme." [OBOL:automatic] +synonym: "fore limb digit 5 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "hand digit 5 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit V phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EHDAA2:0000540 +xref: EMAPA:17723 +is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015029 ! manual digit 5 phalanx endochondral element +intersection_of: UBERON:0015029 ! manual digit 5 phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010580 +name: pedal digit 1 phalanx pre-cartilage condensation +def: "A pre-cartilage condensation that is part of a pedal digit 1 mesenchyme." [OBOL:automatic] +synonym: "foot digit 1 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 1 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "pedal digit I phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EHDAA2:0002041 +xref: EMAPA:17726 +is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015031 ! pedal digit 1 phalanx endochondral element +intersection_of: UBERON:0015031 ! pedal digit 1 phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010581 +name: pedal digit 2 phalanx pre-cartilage condensation +def: "A pre-cartilage condensation that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] +synonym: "foot digit 2 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 2 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "pedal digit II phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EHDAA2:0002046 +xref: EMAPA:17728 +is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015032 ! pedal digit 2 phalanx endochondral element +intersection_of: UBERON:0015032 ! pedal digit 2 phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010582 +name: pedal digit 3 phalanx pre-cartilage condensation +def: "A pre-cartilage condensation that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] +synonym: "foot digit 3 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 3 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "pedal digit III phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EHDAA2:0002051 +xref: EMAPA:17730 +is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015033 ! pedal digit 3 phalanx endochondral element +intersection_of: UBERON:0015033 ! pedal digit 3 phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010583 +name: pedal digit 4 phalanx pre-cartilage condensation +def: "A pre-cartilage condensation that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] +synonym: "foot digit 4 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 4 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "pedal digit IV phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EHDAA2:0002056 +xref: EMAPA:17732 +is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015034 ! pedal digit 4 phalanx endochondral element +intersection_of: UBERON:0015034 ! pedal digit 4 phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010584 +name: pedal digit 5 phalanx pre-cartilage condensation +def: "A pre-cartilage condensation that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] +synonym: "foot digit 5 phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 5 phalanx pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "pedal digit V phalanx pre-cartilage condensation" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EHDAA2:0002061 +xref: EMAPA:17734 +is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015035 ! pedal digit 5 phalanx endochondral element +intersection_of: UBERON:0015035 ! pedal digit 5 phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010585 +name: pedal digit phalanx pre-cartilage condensation +def: "A pre-cartilage condensation that is part of a pedal digit mesenchyme." [OBOL:automatic] +synonym: "foot digit phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot phalanx pre-cartilage condensation" EXACT [VHOG:0000952] +synonym: "hind limb digit phalanx pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "hindlimb phalanx pre-cartilage condensation" EXACT [] +synonym: "pes phalanx pre-cartilage condensation" EXACT [] +xref: EMAPA:32950 +xref: VHOG:0000952 +is_a: UBERON:0010700 ! phalanx pre-cartilage condensation +is_a: UBERON:0010886 ! hindlimb pre-cartilage condensation +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010586 +name: manual digit phalanx pre-cartilage condensation +def: "A pre-cartilage condensation that is part of a manual digit mesenchyme." [OBOL:automatic] +synonym: "fore limb digit phalanx pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "forelimb phalanx pre-cartilage condensation" EXACT [] +synonym: "hand digit phalanx pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand phalanx pre-cartilage condensation" EXACT [VHOG:0000954] +synonym: "manus phalanx pre-cartilage condensation" EXACT [] +xref: EMAPA:32639 +xref: VHOG:0000954 +is_a: UBERON:0010700 ! phalanx pre-cartilage condensation +is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010675 +name: manual digit 1 phalanx cartilage element +def: "A cartilage element that is part of a manual digit 1 mesenchyme." [OBOL:automatic] +synonym: "fore limb digit 1 phalanx cartilage condensation" EXACT [OBOL:accepted] +synonym: "hand digit 1 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit I phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EMAPA:18066 +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015025 ! manual digit 1 phalanx endochondral element +intersection_of: UBERON:0015025 ! manual digit 1 phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010575 ! manual digit 1 phalanx pre-cartilage condensation + +[Term] +id: UBERON:0010676 +name: manual digit 2 phalanx cartilage element +def: "A cartilage element that is part of a manual digit 2 mesenchyme." [OBOL:automatic] +synonym: "fore limb digit 2 phalanx cartilage condensation" EXACT [OBOL:accepted] +synonym: "hand digit 2 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit II phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EMAPA:18071 +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015026 ! manual digit 2 phalanx endochondral element +intersection_of: UBERON:0015026 ! manual digit 2 phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010576 ! manual digit 2 phalanx pre-cartilage condensation + +[Term] +id: UBERON:0010677 +name: manual digit 3 phalanx cartilage element +def: "A cartilage element that is part of a manual digit 3 mesenchyme." [OBOL:automatic] +synonym: "fore limb digit 3 phalanx cartilage condensation" EXACT [OBOL:accepted] +synonym: "hand digit 3 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit III phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EMAPA:18076 +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015027 ! manual digit 3 phalanx endochondral element +intersection_of: UBERON:0015027 ! manual digit 3 phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010577 ! manual digit 3 phalanx pre-cartilage condensation + +[Term] +id: UBERON:0010678 +name: manual digit 4 phalanx cartilage element +def: "A cartilage element that is part of a manual digit 4 mesenchyme." [OBOL:automatic] +synonym: "fore limb digit 4 phalanx cartilage condensation" EXACT [OBOL:accepted] +synonym: "hand digit 4 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit IV phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EMAPA:18081 +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015028 ! manual digit 4 phalanx endochondral element +intersection_of: UBERON:0015028 ! manual digit 4 phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010578 ! manual digit 4 phalanx pre-cartilage condensation + +[Term] +id: UBERON:0010679 +name: manual digit 5 phalanx cartilage element +def: "A cartilage element that is part of a manual digit 5 mesenchyme." [OBOL:automatic] +synonym: "fore limb digit 5 phalanx cartilage condensation" EXACT [OBOL:accepted] +synonym: "hand digit 5 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit V phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EMAPA:18086 +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015029 ! manual digit 5 phalanx endochondral element +intersection_of: UBERON:0015029 ! manual digit 5 phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010579 ! manual digit 5 phalanx pre-cartilage condensation + +[Term] +id: UBERON:0010680 +name: pedal digit 1 phalanx cartilage element +def: "A cartilage element that is part of a pedal digit 1 mesenchyme." [OBOL:automatic] +synonym: "foot digit 1 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 1 phalanx cartilage condensation" EXACT [OBOL:accepted] +synonym: "pedal digit I phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EMAPA:18107 +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015031 ! pedal digit 1 phalanx endochondral element +intersection_of: UBERON:0015031 ! pedal digit 1 phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010580 ! pedal digit 1 phalanx pre-cartilage condensation + +[Term] +id: UBERON:0010681 +name: pedal digit 2 phalanx cartilage element +def: "A cartilage element that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] +synonym: "foot digit 2 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 2 phalanx cartilage condensation" EXACT [OBOL:accepted] +synonym: "pedal digit II phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EMAPA:18112 +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015032 ! pedal digit 2 phalanx endochondral element +intersection_of: UBERON:0015032 ! pedal digit 2 phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010581 ! pedal digit 2 phalanx pre-cartilage condensation + +[Term] +id: UBERON:0010682 +name: pedal digit 3 phalanx cartilage element +def: "A cartilage element that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] +synonym: "foot digit 3 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 3 phalanx cartilage condensation" EXACT [OBOL:accepted] +synonym: "pedal digit III phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EMAPA:18117 +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015033 ! pedal digit 3 phalanx endochondral element +intersection_of: UBERON:0015033 ! pedal digit 3 phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010582 ! pedal digit 3 phalanx pre-cartilage condensation + +[Term] +id: UBERON:0010683 +name: pedal digit 4 phalanx cartilage element +def: "A cartilage element that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] +synonym: "foot digit 4 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 4 phalanx cartilage condensation" EXACT [OBOL:accepted] +synonym: "pedal digit IV phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EMAPA:18122 +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015034 ! pedal digit 4 phalanx endochondral element +intersection_of: UBERON:0015034 ! pedal digit 4 phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010583 ! pedal digit 4 phalanx pre-cartilage condensation + +[Term] +id: UBERON:0010684 +name: pedal digit 5 phalanx cartilage element +def: "A cartilage element that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] +synonym: "foot digit 5 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 5 phalanx cartilage condensation" EXACT [OBOL:accepted] +synonym: "pedal digit V phalanx cartilage element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EMAPA:18127 +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015035 ! pedal digit 5 phalanx endochondral element +intersection_of: UBERON:0015035 ! pedal digit 5 phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010584 ! pedal digit 5 phalanx pre-cartilage condensation + +[Term] +id: UBERON:0010685 +name: pedal digit phalanx cartilage element +def: "A cartilage element that is part of a pedal digit mesenchyme." [OBOL:automatic] +synonym: "foot digit phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit phalanx cartilage condensation" EXACT [OBOL:accepted] +xref: EMAPA:32948 +is_a: UBERON:0010701 ! phalanx cartilage element +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +is_a: UBERON:0035129 ! pes cartilage element +intersection_of: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation + +[Term] +id: UBERON:0010686 +name: manual digit phalanx cartilage element +def: "A cartilage element that is part of a manual digit mesenchyme." [OBOL:automatic] +synonym: "fore limb digit phalanx cartilage condensation" EXACT [OBOL:accepted] +synonym: "hand digit phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +xref: EMAPA:32658 +is_a: UBERON:0010701 ! phalanx cartilage element +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +is_a: UBERON:0035128 ! manus cartilage element +intersection_of: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010586 ! manual digit phalanx pre-cartilage condensation + +[Term] +id: UBERON:0010687 +name: pedal digit metatarsal pre-cartilage condensation +synonym: "foot digit metatarsal pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit metatarsal pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "metatarsal bone pre-cartilage condensation" EXACT [] +synonym: "metatarsal pre-cartilage condensation" RELATED [EMAPA:32956] +synonym: "metatarsus pre-cartilage condensation" EXACT [VHOG:0000948] +xref: EMAPA:32956 +xref: EMAPA:35568 +xref: VHOG:0000948 +is_a: UBERON:0003860 ! hindlimb mesenchyme +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0010886 ! hindlimb pre-cartilage condensation +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +intersection_of: UBERON:0015036 ! pedal digit metatarsal endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010688 +name: skeleton of manual acropodium +def: "The subdivision of the skeleton that consists of all the skeletal elements at the distalmost end of the manual autopodium - i.e. the bones of the hands or their cartilaginous precursors[VSAO,modified]." [https://orcid.org/0000-0002-6601-2165, VSAO:0005029, VSAO:NI] +synonym: "all phalanges in forelimb autopod" EXACT [] +synonym: "anterior acropodium" RELATED [VSAO:0005029, VSAO:NI] +synonym: "anterior acropodium skeleton" EXACT [] +synonym: "fore acropodium skeleton" EXACT [] +synonym: "hand digit skeleton" EXACT [] +synonym: "manual digit skeleton" EXACT [] +synonym: "manual phalanges" EXACT PLURAL [VSAO:0005029, VSAO:NI] +synonym: "phalanges of hand" EXACT [FMA:71337] +synonym: "phalanges of manus" EXACT [] +synonym: "set of manual phalanges" EXACT [] +synonym: "set of phalanges of hand" EXACT [FMA:71337] +synonym: "set of phalanges of manus" EXACT [] +xref: FMA:71337 +xref: http://en.wikipedia.org/wiki/Phalanges_of_the_hand +xref: VSAO:0005029 +is_a: UBERON:0010543 ! acropodial skeleton +intersection_of: UBERON:0010543 ! acropodial skeleton +intersection_of: part_of UBERON:0002398 ! manus +disjoint_from: UBERON:0010696 {source="lexical"} ! skeleton of pedal acropodium +relationship: part_of UBERON:0012151 {source="PHENOSCAPE:ni"} ! skeleton of manual digitopodium +relationship: proximally_connected_to UBERON:0010544 ! metacarpus skeleton + +[Term] +id: UBERON:0010690 +name: manual digit 1 epithelium +def: "An epithelium that is part of a manual digit 1." [OBOL:automatic] +synonym: "fore limb digit 1 epithelium" EXACT [OBOL:accepted] +synonym: "hand digit 1 epithelium" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit I epithelium" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EHDAA2:0000512 +xref: EMAPA:17430 +is_a: UBERON:0005227 ! manual digit epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001463 ! manual digit 1 +relationship: part_of UBERON:0001463 ! manual digit 1 + +[Term] +id: UBERON:0010693 +name: pedal digit 1 epithelium +def: "An epithelium that is part of a pedal digit 1." [OBOL:automatic] +synonym: "foot digit 1 epithelium" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 1 epithelium" EXACT [OBOL:accepted] +synonym: "pedal digit I epithelium" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: EHDAA2:0002038 +xref: EMAPA:17461 +is_a: UBERON:0005226 ! pedal digit epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0003631 ! pedal digit 1 +relationship: part_of UBERON:0003631 ! pedal digit 1 + +[Term] +id: UBERON:0010695 +name: mesenchyme of tarsal region +def: "Mesenchyme of the carpal region that contributes to the tarsal skeleton." [https://orcid.org/0000-0002-6601-2165] +xref: EMAPA:18502 +is_a: UBERON:0003860 ! hindlimb mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0004454 ! tarsal region +relationship: part_of UBERON:0004454 ! tarsal region + +[Term] +id: UBERON:0010696 +name: skeleton of pedal acropodium +def: "The subdivision of the skeleton that consists of all the skeletal elements at the distalmost end of the pedal autopodium - i.e. the bones of the foot or their cartilaginous precursors[cjm]." [https://orcid.org/0000-0002-6601-2165] +synonym: "all phalanges in hindlimb autopod" EXACT [] +synonym: "foot digit skeleton" EXACT [] +synonym: "hind acropodium skeleton" EXACT [] +synonym: "pedal phalanges" EXACT [VSAO:0005030, VSAO:NI] +synonym: "phalanges of foot" EXACT [FMA:78512] +synonym: "phalanges of pes" EXACT [] +synonym: "posterior acropodium" RELATED [VSAO:0005030, VSAO:NI] +synonym: "posterior acropodium skeleton" EXACT [] +synonym: "set of pedal phalanges" EXACT [] +synonym: "set of phalanges of foot" EXACT [FMA:78512] +synonym: "set of phalanges of pes" EXACT [] +xref: FMA:78512 +xref: http://en.wikipedia.org/wiki/Phalanges_of_the_foot +xref: VSAO:0005030 +is_a: UBERON:0010543 ! acropodial skeleton +intersection_of: UBERON:0010543 ! acropodial skeleton +intersection_of: part_of UBERON:0002387 ! pes +relationship: part_of UBERON:0012152 {source="PHENOSCAPE:ni"} ! skeleton of pedal digitopodium +relationship: proximally_connected_to UBERON:0010545 ! metatarsus skeleton + +[Term] +id: UBERON:0010697 +name: pedal digit metatarsal cartilage element +synonym: "foot digit metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit metatarsal cartilage condensation" EXACT [OBOL:accepted] +synonym: "metatarsal cartilage condensation" RELATED [EMAPA:32951] +xref: EMAPA:32951 +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +is_a: UBERON:0035129 ! pes cartilage element +intersection_of: UBERON:0015036 ! pedal digit metatarsal endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation + +[Term] +id: UBERON:0010698 +name: manual digit metacarpus pre-cartilage condensation +synonym: "fore limb digit metacarpus pre-cartilage condensation" EXACT [OBOL:accepted] +synonym: "hand digit metacarpus pre-cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpal bone pre-cartilage condensation" EXACT [VHOG:0000953] +synonym: "metacarpal pre-cartilage condensation" EXACT [] +synonym: "metacarpus pre-cartilage condensation" EXACT [VHOG:0000953] +xref: EMAPA:32850 +xref: VHOG:0000953 +is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +intersection_of: UBERON:0015042 ! manual digit metacarpus endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010699 +name: manual digit metacarpus cartilage element +synonym: "finger metacarpus cartilage element" EXACT [] +synonym: "fore limb digit metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpal cartilage condensation" RELATED [EMAPA:32849] +synonym: "metacarpal cartilage element" EXACT [] +synonym: "metacarpus cartilage element" EXACT [] +xref: EMAPA:32849 +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +is_a: UBERON:0035128 ! manus cartilage element +intersection_of: UBERON:0015042 ! manual digit metacarpus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation + +[Term] +id: UBERON:0010700 +name: phalanx pre-cartilage condensation +xref: EMAPA:32720 +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation +is_a: UBERON:0015023 ! phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0010702 {source="EMAPA"} ! digit mesenchyme + +[Term] +id: UBERON:0010701 +name: phalanx cartilage element +synonym: "phalanx cartilage condensation" EXACT [EMAPA:32721] +xref: EMAPA:32721 +is_a: UBERON:0015023 ! phalanx endochondral element +is_a: UBERON:0015064 ! autopod cartilage +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010700 ! phalanx pre-cartilage condensation + +[Term] +id: UBERON:0010702 +name: digit mesenchyme +def: "Mesenchyme of the digit region." [http://orcid.org/0000-0002-6601-2165] +synonym: "digital ray" RELATED [NCIT:C34141] +xref: EMAPA:32719 +xref: http://linkedlifedata.com/resource/umls/id/C1511959 +xref: NCIT:C34141 +is_a: UBERON:0009749 ! limb mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0002544 ! digit +relationship: part_of UBERON:0002544 ! digit + +[Term] +id: UBERON:0010703 +name: forelimb zeugopod skeleton +def: "The collection of all skeletal elements in an forelimb zeugopod region." [https://orcid.org/0000-0002-6601-2165] +synonym: "antebrachial skeleton" EXACT [] +synonym: "antebrachium skeleton" EXACT [PHENOSCAPE:ni] +synonym: "anterior zeugopodium" RELATED [VSAO:0005011, VSAO:NI] +synonym: "anterior zeugopodium skeleton" EXACT [VSAO:0005011, VSAO:NI] +synonym: "fore epipodium" RELATED [AAO:0000200] +synonym: "fore epipodium skeleton" EXACT [] +synonym: "forearm skeleton" EXACT [FMA:71199] +synonym: "forelimb epipodium" RELATED [VSAO:0005011, VSAO:NI] +synonym: "forelimb epipodium skeleton" RELATED [] +synonym: "mesomere 2 of pectoral appendage" RELATED HOMOLOGY [ISBN:0226313409] +synonym: "radius and ulna" RELATED [] +synonym: "skeleton of forearm" EXACT HUMAN_PREFERRED [FMA:71199] +synonym: "wing zeugopod skeleton" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +xref: AAO:0000200 +xref: FMA:71199 +xref: VSAO:0005011 +is_a: UBERON:0011584 ! zeugopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0002386 ! forelimb zeugopod +disjoint_from: UBERON:0010720 {source="lexical"} ! hindlimb zeugopod skeleton +relationship: part_of UBERON:0001440 ! forelimb skeleton +relationship: part_of UBERON:0002386 ! forelimb zeugopod +relationship: skeleton_of UBERON:0002386 ! forelimb zeugopod + +[Term] +id: UBERON:0010704 +name: parenchyma of quadrate lobe of liver +def: "A liver parenchyma that is part of a quadrate lobe of liver." [OBOL:automatic] +synonym: "liver right quadrate lobe parenchyma" EXACT [EHDAA2:0001014] +synonym: "parenchyma of quadrate lobe" EXACT [EMAPA:18320] +xref: EHDAA2:0001014 +xref: EMAPA:18320 +xref: FMA:71676 +is_a: UBERON:0005221 ! liver right lobe parenchyma +intersection_of: UBERON:0001280 ! liver parenchyma +intersection_of: part_of UBERON:0001116 ! quadrate lobe of liver +relationship: part_of UBERON:0001116 ! quadrate lobe of liver + +[Term] +id: UBERON:0010706 +name: parenchyma of caudate lobe of liver +def: "A liver parenchyma that is part of a caudate lobe of liver." [OBOL:automatic] +synonym: "liver right caudate lobe parenchyma" EXACT [EHDAA2:0001007] +synonym: "parenchyma of caudate lobe" EXACT [EMAPA:18315] +xref: EHDAA2:0001007 +xref: EMAPA:18315 +xref: FMA:71659 +is_a: UBERON:0005221 ! liver right lobe parenchyma +is_a: UBERON:0005222 ! liver left lobe parenchyma +intersection_of: UBERON:0001280 ! liver parenchyma +intersection_of: part_of UBERON:0001117 ! caudate lobe of liver +relationship: part_of UBERON:0001117 ! caudate lobe of liver + +[Term] +id: UBERON:0010707 +name: appendage girdle complex +def: "An organism subdivision that includes both an appendage and its associated girdle region. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc)." [https://github.com/obophenotype/uberon/wiki/Appendages-and-the-appendicular-skeleton, https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "appendage complex" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "appendage-girdle complex" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "appendage/girdle complex" EXACT [VSAO:0000214] +synonym: "girdle plus limb or fin" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "limb" RELATED INCONSISTENT [FMA:7182] +xref: EMAPA:37858 {source="MA:th"} +xref: FMA:7182 +xref: VSAO:0000214 +is_a: UBERON:0000475 ! organism subdivision +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0000468 ! multicellular organism +created_by: haendel +creation_date: 2012-04-23T10:46:51Z + +[Term] +id: UBERON:0010708 +name: pectoral complex +def: "Appendage girdle complex that when present, encompasses the pectoral appendicular skeleton and the pectoral girdle." [VSAO:0000213] +subset: pheno_slim +synonym: "pectoral appendage/girdle complex" EXACT [VSAO:0000213] +synonym: "pectoral girdle plus anterior limb or fin" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "pectoral girdle plus pectoral limb or fin" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "upper limb" RELATED INCONSISTENT [FMA:7183] +synonym: "upper limb and pectoral girdle" RELATED HUMAN_PREFERRED [https://orcid.org/0000-0002-6601-2165] +synonym: "upper limb and shoulder" RELATED [https://orcid.org/0000-0002-6601-2165] +xref: EMAPA:37860 {source="MA:th"} +xref: FMA:7183 +xref: http://www.snomedbrowser.com/Codes/Details/110716002 +xref: VSAO:0000213 +is_a: UBERON:0010707 ! appendage girdle complex +intersection_of: UBERON:0010707 ! appendage girdle complex +intersection_of: has_part UBERON:0001421 ! pectoral girdle region +relationship: has_part UBERON:0001421 ! pectoral girdle region +relationship: has_skeleton UBERON:0012475 ! skeleton of pectoral complex + +[Term] +id: UBERON:0010709 +name: pelvic complex +def: "Appendage girdle complex that when present, encompasses the pelvic appendicular skeleton and the pelvic girdle." [VSAO:0000215] +subset: pheno_slim +synonym: "lower limb" RELATED INCONSISTENT [FMA:7184] +synonym: "lower limb and pelvic girdle" RELATED HUMAN_PREFERRED [https://orcid.org/0000-0002-6601-2165] +synonym: "lower limb and pelvis" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "pelvic appendage/girdle complex" EXACT [VSAO:0000215] +synonym: "pelvic girdle plus pelvic limb or fin" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "pelvic girdle plus posterior limb or fin" EXACT [https://orcid.org/0000-0002-6601-2165] +xref: EMAPA:37863 {source="MA:th"} +xref: FMA:7184 +xref: http://www.snomedbrowser.com/Codes/Details/416631005 +xref: VSAO:0000215 +is_a: UBERON:0010707 ! appendage girdle complex +intersection_of: UBERON:0010707 ! appendage girdle complex +intersection_of: has_part UBERON:0001271 ! pelvic girdle region +relationship: has_part UBERON:0001271 ! pelvic girdle region +relationship: has_skeleton UBERON:0012476 ! skeleton of pelvic complex + +[Term] +id: UBERON:0010710 +name: pectoral fin skeleton +def: "Paired fin skeleton that consists of the supporting endochondral proximal and distal radials and the dermal fins rays or lepidotrichia. The pectoral fin skeleton is located in the thoracic region of the body and articulates with the scapula and coracoid." [TAO:wd] +subset: efo_slim +synonym: "forefin skeleton" EXACT [TAO:0000943] +xref: EFO:0003594 +xref: TAO:0000943 +xref: VSAO:0000153 +xref: ZFA:0000943 +is_a: UBERON:0007272 ! pectoral appendage skeleton +is_a: UBERON:0010713 ! paired fin skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0000151 ! pectoral fin +relationship: part_of UBERON:0000151 {source="TAO"} ! pectoral fin +relationship: skeleton_of UBERON:0000151 ! pectoral fin + +[Term] +id: UBERON:0010711 +name: pelvic fin skeleton +def: "Paired fin skeleton located in the abdominal position that consists of supporting endochondral radialsB and dermal fin rays or lepidotrichia." [TAO:0001387] +xref: TAO:0001387 +xref: VSAO:0000154 +xref: ZFA:0001387 +is_a: UBERON:0007273 ! pelvic appendage skeleton +is_a: UBERON:0010713 ! paired fin skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0000152 ! pelvic fin +relationship: part_of UBERON:0000152 {source="TAO"} ! pelvic fin +relationship: skeleton_of UBERON:0000152 ! pelvic fin + +[Term] +id: UBERON:0010712 +name: limb skeleton subdivision +def: "Skeletal subdivision that is a segment of the limb skeleton." [VSAO:0005018, VSAO:NI] +xref: VSAO:0005018 +is_a: UBERON:0010912 ! subdivision of skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: part_of UBERON:0002101 ! limb +relationship: part_of UBERON:0002091 {source="VSAO"} ! appendicular skeleton +relationship: part_of UBERON:0002101 ! limb + +[Term] +id: UBERON:0010713 +name: paired fin skeleton +def: "The collection of all skeletal elements in a single paired fin." [https://orcid.org/0000-0002-6601-2165] +xref: TAO:0000027 +xref: VSAO:0000169 +xref: ZFA:0000027 +is_a: UBERON:0011582 ! paired limb/fin skeleton +is_a: UBERON:0012353 ! fin skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0002534 ! paired fin +relationship: part_of UBERON:0002534 ! paired fin +relationship: skeleton_of UBERON:0002534 ! paired fin + +[Term] +id: UBERON:0010714 +name: iliac cartilage element +def: "A iliac endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +synonym: "iliac cartilage condensation" RELATED [EMAPA:18347] +xref: EHDAA2:0000808 +xref: EMAPA:18347 +xref: VHOG:0001126 +is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015054 ! iliac endochondral element +intersection_of: UBERON:0015054 ! iliac endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0006247 {source="EHDAA2"} ! iliac pre-cartilage condensation + +[Term] +id: UBERON:0010718 +name: pubic cartilage element +def: "A pubic endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +synonym: "pubic cartilage condensation" RELATED [EMAPA:26928] +xref: EHDAA2:0001573 +xref: EMAPA:26928 +is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015055 ! pubic endochondral element +intersection_of: UBERON:0015055 ! pubic endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0006285 {source="EHDAA2"} ! pubic pre-cartilage condensation + +[Term] +id: UBERON:0010719 +name: girdle skeleton +def: "The subdivision of the skeleton of either the pectoral or pelvic girdle." [https://orcid.org/0000-0002-6601-2165] +synonym: "skeleton of girdle" EXACT [] +xref: AAO:0010686 +xref: VSAO:0000302 +is_a: UBERON:0010912 ! subdivision of skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0007823 ! appendage girdle region +relationship: part_of UBERON:0002091 ! appendicular skeleton +relationship: part_of UBERON:0007823 ! appendage girdle region +relationship: proximally_connected_to UBERON:0002090 ! postcranial axial skeleton +relationship: skeleton_of UBERON:0007823 ! appendage girdle region + +[Term] +id: UBERON:0010720 +name: hindlimb zeugopod skeleton +def: "Subdivision of skeleton consisting of all skeletal elements in an hindlimb zeugopod region. Typically consists of the tibia and the fibula." [https://orcid.org/0000-0002-6601-2165] +synonym: "crural skeleton" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "crus skeleton" EXACT [PHENOSCAPE:ni] +synonym: "hind epipodium" RELATED [AAO:0000216] +synonym: "hindlimb epipodium" RELATED [VSAO:0005014, VSAO:NI] +synonym: "hindlimb zygopod skeleton" EXACT [] +synonym: "mesomere 2 of pelvic appendage" RELATED HOMOLOGY [ISBN:0226313409] +synonym: "posterior zeugopodium" RELATED INCONSISTENT [VSAO:0005014] +synonym: "posterior zeugopodium skeleton" EXACT [] +synonym: "skeleton cruris" EXACT LATIN [NominaAnatomicaVeterinaria:2005] +xref: AAO:0000216 +xref: VSAO:0005014 +is_a: UBERON:0011584 ! zeugopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0003823 ! hindlimb zeugopod +relationship: part_of UBERON:0003823 ! hindlimb zeugopod +relationship: proximally_connected_to UBERON:0000981 ! femur +relationship: skeleton_of UBERON:0003823 ! hindlimb zeugopod + +[Term] +id: UBERON:0010721 +name: distal tarsal bone +def: "There are three cuneiform bones in the human foot: the medial cuneiform the intermediate cuneiform also known as the middle the lateral cuneiform. They are located between the navicular bone and the first, second and third metatarsal bones and are medial to the cuboid bone[WP, unvetted, human specific]." [http://en.wikipedia.org/wiki/Cuneiform_(anatomy)] +synonym: "cuneiform" RELATED [] +synonym: "cuneiform bone" EXACT [FMA:24517] +synonym: "distal tarsal" EXACT [AAO:0000914] +synonym: "distal tarsal bone" EXACT [] +synonym: "os cuneiform" EXACT [] +synonym: "os cuneiforme" EXACT [] +xref: AAO:0000914 +xref: Cuneiform:(anatomy) +xref: FMA:24517 +xref: http://linkedlifedata.com/resource/umls/id/C1511560 +xref: http://www.snomedbrowser.com/Codes/Details/182102002 +xref: NCIT:C32416 +xref: UMLS:C1511560 {source="ncithesaurus:Cuneiform_Bone_of_the_Foot"} +is_a: UBERON:0001447 ! tarsal bone +is_a: UBERON:0015099 ! distal tarsal endochondral element +is_a: UBERON:0018102 ! distal mesopodial bone +intersection_of: UBERON:0015099 ! distal tarsal endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015100 ! distal tarsal cartilage +relationship: distally_connected_to UBERON:0001448 ! metatarsal bone + +[Term] +id: UBERON:0010722 +name: accessory bone +def: "A bone which does not occur frequently in the body but is still present in a significantly large number of organisms" [http://en.wikipedia.org/wiki/Accessory_bone] +xref: Accessory:bone +is_a: UBERON:0001474 ! bone element + +[Term] +id: UBERON:0010723 +name: os vesalianum pedis +def: "An accessory bone located proximal to the base of the fifth metatarsal. Its prevalence has been reported to be from 0.1% to 1.0%. This bone is found within the peroneus brevis tendon and is considered to be asymptomatic in the majority of people" [http://www.ncbi.nlm.nih.gov/pubmed/16291851] +synonym: "pedal vesalian bone" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "vesalian bone" BROAD [] +xref: http://www.snomedbrowser.com/Codes/Details/182149003 +is_a: UBERON:0010721 {source="cjm"} ! distal tarsal bone +is_a: UBERON:0010722 ! accessory bone + +[Term] +id: UBERON:0010724 +name: lateral tubercle of talus +def: "An accessory bone tubercle which if present lies posterior to the talus" [http://en.wikipedia.org/wiki/Os_trigonum] +synonym: "accessory talus" EXACT [http://en.wikipedia.org/wiki/Os_trigonum] +synonym: "os trigonum" EXACT LATIN [FMA:TA] +synonym: "os trigonum of talus" EXACT [FMA:33655] +synonym: "tuberculum laterale (talus)" EXACT [FMA:33655] +xref: FMA:33655 +xref: http://www.snomedbrowser.com/Codes/Details/87573005 +xref: Os:trigonum +is_a: UBERON:0005813 {source="FMA"} ! tubercle +relationship: part_of UBERON:0002387 ! pes + +[Term] +id: UBERON:0010725 +name: accessory navicular bone +def: "An accessory bone of the pes that occasionally develops abnormally in front of the ankle towards the inside of the pes. This bone may be present in approximately 2.5% of the general population and is usually asymptomatic" [http://en.wikipedia.org/wiki/Accessory_navicular_bone] +xref: http://en.wikipedia.org/wiki/Accessory_navicular_bone +xref: http://www.snomedbrowser.com/Codes/Details/118496000 +is_a: UBERON:0005899 ! pes bone +is_a: UBERON:0010722 ! accessory bone + +[Term] +id: UBERON:0010726 +name: os vesalianum manus +synonym: "manual vesalian bone" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: http://www.anatomyatlases.org/AnatomicVariants/SkeletalSystem/Images/94.jpg +is_a: UBERON:0001481 {source="cjm"} ! distal carpal bone +is_a: UBERON:0010722 ! accessory bone + +[Term] +id: UBERON:0010727 +name: sutural bone +def: "A piece of bone that is located within a suture in the cranium." [http://en.wikipedia.org/wiki/Wormian_bones] +synonym: "Wormian bone" EXACT [FMA:59327] +xref: FMA:59327 +xref: http://www.snomedbrowser.com/Codes/Details/272677004 +xref: Wormian:bones +is_a: UBERON:0004766 ! cranial bone +is_a: UBERON:0010428 {source="FMA"} ! flat bone +relationship: part_of UBERON:0003685 ! cranial suture + +[Term] +id: UBERON:0010728 +name: sphenoid lesser wing pre-cartilage condensation +def: "A orbitosphenoid endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +xref: EHDAA2:0003449 +is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation +is_a: UBERON:0006904 ! head mesenchyme from mesoderm +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015059 ! orbitosphenoid endochondral element +intersection_of: UBERON:0015059 ! orbitosphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009191 {source="EHDAA2"} ! sphenoid bone pre-cartilage condensation + +[Term] +id: UBERON:0010732 +name: alisphenoid pre-cartilage condensation +def: "A alisphenoid endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +synonym: "sphenoid greater wing pre-cartilage condensation" EXACT [EHDAA2:0003448] +xref: EHDAA2:0003448 +is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation +is_a: UBERON:0006904 ! head mesenchyme from mesoderm +is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0015058 ! alisphenoid endochondral element +intersection_of: UBERON:0015058 ! alisphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009191 {source="EHDAA2"} ! sphenoid bone pre-cartilage condensation + +[Term] +id: UBERON:0010733 +name: alisphenoid cartilage element +def: "A alisphenoid endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +synonym: "alisphenoid cartilage" RELATED [] +synonym: "sphenoid greater wing cartilage condensation" EXACT [EHDAA2:0003450] +xref: EHDAA2:0003450 +is_a: UBERON:0003932 ! cartilage element of chondrocranium +is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation +is_a: UBERON:0006904 ! head mesenchyme from mesoderm +is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:0015058 ! alisphenoid endochondral element +intersection_of: UBERON:0015058 ! alisphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010732 {source="EHDAA2"} ! alisphenoid pre-cartilage condensation +relationship: part_of UBERON:0009193 {source="EHDAA2"} ! sphenoid cartilage element + +[Term] +id: UBERON:0010737 +name: distal tarsal bone 4 +def: "Endochondral tarsal bone articulating with centralia and metatarsal 4." [VSAO:0005055] +synonym: "cuboideum" RELATED [VSAO:0005055] +synonym: "distal tarsal 4" BROAD [VSAO:0005055] +synonym: "os cuboideum" RELATED LATIN [NominaAnatomicaVeterinaria:2005] +synonym: "os tarsale IV" EXACT LATIN [NominaAnatomicaVeterinaria:2005] +synonym: "tarsal 4" BROAD [AAO:0000932] +xref: AAO:0000932 +xref: VSAO:0005055 +is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015111 ! distal tarsal bone 4 endochondral element +intersection_of: UBERON:0015111 ! distal tarsal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015112 ! distal tarsal bone 4 cartilage +relationship: distally_connected_to UBERON:0003653 ! metatarsal bone of digit 4 +relationship: proximally_connected_to UBERON:0001451 ! navicular bone of pes + +[Term] +id: UBERON:0010738 +name: distal tarsal bone 5 +def: "Endochondral tarsal bone articulating with centralia and metatarsal 5." [VSAO:0005056] +comment: We need to restrict the logical definition such that it is *only* connecting to metatarsal 5 +synonym: "cuboideum" RELATED [VSAO:0005056] +synonym: "distal tarsal 5" EXACT [VSAO:0005056] +synonym: "tarsal 5" EXACT [AAO:0000933] +xref: AAO:0000933 +xref: VSAO:0005056 +is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015114 ! distal tarsal bone 5 endochondral element +intersection_of: UBERON:0015114 ! distal tarsal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015115 ! distal tarsal bone 5 cartilage +relationship: distally_connected_to UBERON:0003654 ! metatarsal bone of digit 5 +relationship: proximally_connected_to UBERON:0001451 ! navicular bone of pes + +[Term] +id: UBERON:0010739 +name: distal carpal bone 5 +def: "endochondral carpal bone similar to distal carpal 4, but lost in most reptiles and mammals." [VSAO:0005047] +synonym: "carpal 5" RELATED [AAO:0000851] +synonym: "distal carpal 5" EXACT [VSAO:0005047] +synonym: "hamate" RELATED [VSAO:0005047] +synonym: "os hamatum" RELATED [VSAO:0005047] +synonym: "unciform" RELATED [VSAO:0005047] +synonym: "uncinate" RELATED [VSAO:0005047] +xref: AAO:0000851 +xref: VSAO:0005047 +is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015096 ! distal carpal bone 5 endochondral element +intersection_of: UBERON:0015096 ! distal carpal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015097 ! distal carpal bone 5 cartilage + +[Term] +id: UBERON:0010740 +name: bone of appendage girdle complex +def: "A bone that is part of an appendage girdle complex (i.e. any bone in a limb, fin or girdle)." [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +subset: pheno_slim +synonym: "bone of extended limb/fin region" RELATED [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +synonym: "limb bone" RELATED [MA:0000688, UBERONREF:0000003] +xref: EMAPA:35494 +xref: MA:0000688 +is_a: UBERON:0001474 ! bone element +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0010707 ! appendage girdle complex +relationship: contributes_to_morphology_of UBERON:0002091 ! appendicular skeleton +relationship: part_of UBERON:0002091 {notes="UBERONREF:0000003"} ! appendicular skeleton +relationship: part_of UBERON:0010707 ! appendage girdle complex + +[Term] +id: UBERON:0010741 +name: bone of pectoral complex +def: "A bone that is part of a pectoral complex. Examples: scapula, manus phalanx, any carpal bone, any bone of the pectoral fin." [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +subset: pheno_slim +synonym: "bone of forelimb or pectoral fin or pectoral girdle" RELATED [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +synonym: "forelimb bone" RELATED [MA:0000612, UBERONREF:0000003] +synonym: "wing bone" NARROW SENSU [UBERONREF:0000003] +xref: EMAPA:32623 +xref: EMAPA:35933 +xref: MA:0000612 +is_a: UBERON:0010740 ! bone of appendage girdle complex +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0010708 ! pectoral complex +relationship: part_of UBERON:0010708 ! pectoral complex + +[Term] +id: UBERON:0010742 +name: bone of pelvic complex +def: "A bone that is part of a pelvic complex. Examples: pubis, ischium, fot phalanx, any tarsal bone, any bone of the pelvic fin or girdle." [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +subset: pheno_slim +synonym: "hindlimb bone" RELATED [MA:0000660, UBERONREF:0000003] +xref: EMAPA:32633 +xref: EMAPA:35934 +xref: MA:0000660 +is_a: UBERON:0010740 {source="MA"} ! bone of appendage girdle complex +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0010709 ! pelvic complex +relationship: part_of UBERON:0010709 ! pelvic complex + +[Term] +id: UBERON:0010743 +name: meningeal cluster +def: "The collection of all meningeal layers that line a central nervous system." [https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "cerebral meninges" EXACT [] +synonym: "cluster of meninges" EXACT [FMA:231572] +synonym: "meninges" EXACT [FMA:231572] +xref: EHDAA2:0004661 +xref: EMAPA:32660 +xref: FMA:231572 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1465 +xref: http://en.wikipedia.org/wiki/Meninges +xref: http://linkedlifedata.com/resource/umls/id/C0228116 +xref: http://www.snomedbrowser.com/Codes/Details/362879001 +xref: NCIT:C12349 +is_a: UBERON:0034925 ! anatomical collection +intersection_of: UBERON:0034925 ! anatomical collection +intersection_of: bounding_layer_of UBERON:0001017 ! central nervous system +intersection_of: has_member UBERON:0002360 ! meninx +relationship: bounding_layer_of UBERON:0001017 ! central nervous system +relationship: has_member UBERON:0002360 ! meninx +relationship: part_of UBERON:0001017 ! central nervous system + +[Term] +id: UBERON:0010744 +name: sacral vertebra pre-cartilage condensation +def: "A sacral vertebra endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +synonym: "sacral vertebral pre-cartilage condensation group" EXACT [EHDAA2:0001774] +xref: EHDAA2:0001774 +xref: EMAPA:17677 +is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015010 ! sacral vertebra endochondral element +intersection_of: UBERON:0015010 ! sacral vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010745 +name: sacral vertebra cartilage element +def: "A sacral vertebra endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +synonym: "sacral vertebral cartilage condensation" EXACT [] +synonym: "sacral vertebral cartilage condensation group" EXACT [EHDAA2:0001773] +xref: EHDAA2:0001773 +xref: EMAPA:18009 +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015010 ! sacral vertebra endochondral element +is_a: UBERON:2001457 ! postcranial axial cartilage +intersection_of: UBERON:0015010 ! sacral vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010744 {source="EHDAA2"} ! sacral vertebra pre-cartilage condensation + +[Term] +id: UBERON:0010746 +name: iliac blade +def: "The extension of the ilium above the level of the acetabulum. Attachment site for both hindlimb and caudal musculature. Medially is the site of attachment of the sacral ribs, where these exist[PHENOSCAPE:ad]." [https://github.com/obophenotype/uberon/issues/69, PHENOSCAPE:ad] +subset: pheno_slim +synonym: "a. ossis ilii" EXACT LATIN [http://en.wikipedia.org/wiki/Wing_of_ilium] +synonym: "ala of ilium" EXACT [FMA:42826] +synonym: "ala ossis ilii" EXACT LATIN [FMA:TA, http://en.wikipedia.org/wiki/Wing_of_ilium] +synonym: "ilium ala" EXACT [FMA:42826] +synonym: "wing of ilium" EXACT [] +synonym: "wing of the ilium" EXACT [http://en.wikipedia.org/wiki/Wing_of_ilium] +xref: FMA:42826 +xref: http://en.wikipedia.org/wiki/Wing_of_ilium +xref: http://www.snomedbrowser.com/Codes/Details/182024000 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ +property_value: dc-contributor https://github.com/alex-dececchi +property_value: dc-contributor https://github.com/cmungall +relationship: part_of UBERON:0001273 ! ilium + +[Term] +id: UBERON:0010747 +name: body of ilium +def: "The body of ilium enters into the formation of the acetabulum, of which it forms rather less than two-fifths. Its external surface is partly articular, partly non-articular; the articular segment forms part of the lunate surface of the acetabulum, the non-articular portion contributes to the acetabular fossa. The internal surface of the body is part of the wall of the lesser pelvis and gives origin to some fibers of the Obturator internus. Below, it is continuous with the pelvic surfaces of the ischium and pubis, only a faint line indicating the place of union." [http://en.wikipedia.org/wiki/Body_of_ilium] +subset: pheno_slim +synonym: "corpus ossis ilii" RELATED LATIN [http://en.wikipedia.org/wiki/Body_of_ilium] +synonym: "ilium body" EXACT [FMA:42825] +xref: FMA:42825 +xref: http://en.wikipedia.org/wiki/Body_of_ilium +xref: http://www.snomedbrowser.com/Codes/Details/292524005 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ +relationship: part_of UBERON:0001273 ! ilium + +[Term] +id: UBERON:0010748 +name: lymph node follicle +def: "A lymphoid follicle that is part of a lymph node." [OBOL:automatic] +synonym: "follicle of lymph node" EXACT [] +xref: EMAPA:35527 +xref: MA:0000742 +is_a: UBERON:0000444 ! lymphoid follicle +intersection_of: UBERON:0000444 ! lymphoid follicle +intersection_of: part_of UBERON:0000029 ! lymph node +relationship: part_of UBERON:0002006 {notes="issues/7", source="MP-def"} ! cortex of lymph node + +[Term] +id: UBERON:0010749 +name: middle pharyngeal constrictor +def: "The middle pharyngeal constrictor is a fanshaped muscle, smaller than the Inferior pharyngeal constrictor muscle." [http://en.wikipedia.org/wiki/Middle_pharyngeal_constrictor_muscle] +synonym: "constrictor medius" RELATED [http://en.wikipedia.org/wiki/Middle_pharyngeal_constrictor_muscle] +synonym: "constrictor pharyngis medius" RELATED [http://en.wikipedia.org/wiki/Middle_pharyngeal_constrictor_muscle] +synonym: "constrictores pharyngis medius" RELATED [http://en.wikipedia.org/wiki/Middle_pharyngeal_constrictor_muscle] +synonym: "hyopharyngeus" RELATED [] +synonym: "middle constrictor" EXACT [FMA:46622] +synonym: "middle constrictor" RELATED [http://en.wikipedia.org/wiki/Middle_pharyngeal_constrictor_muscle] +synonym: "middle constrictor muscle" RELATED [] +synonym: "middle constrictor of pharynx" EXACT [FMA:46622] +synonym: "middle constrictor pharyngeus" EXACT [FMA:46622] +synonym: "middle pharyngeal constrictor" RELATED [http://en.wikipedia.org/wiki/Middle_pharyngeal_constrictor_muscle] +synonym: "musculus constrictor pharyngis medius" EXACT LATIN [FMA:TA] +synonym: "musculus constrictor pharyngis medius" RELATED LATIN [http://en.wikipedia.org/wiki/Middle_pharyngeal_constrictor_muscle] +xref: FMA:46622 +xref: http://en.wikipedia.org/wiki/Middle_pharyngeal_constrictor_muscle +xref: http://linkedlifedata.com/resource/umls/id/C1513291 +xref: http://www.snomedbrowser.com/Codes/Details/244802003 +xref: NCIT:C33115 +xref: UMLS:C1513291 {source="ncithesaurus:Middle_Constrictor_Muscle"} +is_a: UBERON:0001569 {source="FMA"} ! constrictor muscle of pharynx +relationship: has_muscle_origin UBERON:0001685 {source="dbpedia"} ! hyoid bone +relationship: innervated_by UBERON:0001759 {notes="pharyngeal plexus", source="Wikipedia"} ! vagus nerve + +[Term] +id: UBERON:0010750 +name: prefrontal bone +def: "A bone separating the lacrimal and frontal bones in many tetrapod skulls" [http://en.wikipedia.org/wiki/Prefrontal_bone] +synonym: "prefrontal" BROAD [AAO:0000460] +xref: AAO:0000460 +xref: Prefrontal:bone +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0008907 {source="ISBN:0073040584"} ! dermal bone +relationship: adjacent_to UBERON:0000209 ! tetrapod frontal bone +relationship: adjacent_to UBERON:0001680 ! lacrimal bone +relationship: part_of UBERON:0003113 {notes="orbital series", source="ISBN:0073040584"} ! dermatocranium + +[Term] +id: UBERON:0010751 +name: squamous part of temporal bone primordium +synonym: "squamosal bone primordium" EXACT [] +synonym: "squamosal primordium" EXACT [] +xref: EHDAA2:0001907 +xref: EHDAA:9536 +is_a: UBERON:0001048 ! primordium +intersection_of: UBERON:0001048 ! primordium +intersection_of: has_potential_to_develop_into UBERON:0001695 ! squamous part of temporal bone +relationship: develops_from UBERON:0007213 ! mesenchyme derived from head neural crest +relationship: has_potential_to_develop_into UBERON:0001695 ! squamous part of temporal bone +relationship: part_of UBERON:0004339 {source="http://www.ncbi.nlm.nih.gov/pubmed/11523816", source="EHDAA2"} ! vault of skull + +[Term] +id: UBERON:0010752 +name: exoccipital cartilage element +def: "A exoccipital endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +xref: EMAPA:18339 +is_a: UBERON:0003932 ! cartilage element of chondrocranium +is_a: UBERON:0005253 ! head mesenchyme +is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015051 ! exoccipital endochondral element +intersection_of: UBERON:0015051 ! exoccipital endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0006228 ! exoccipital pre-cartilage condensation +relationship: has_potential_to_develop_into UBERON:0001693 ! exoccipital bone + +[Term] +id: UBERON:0010753 +name: lymph node secondary follicle +def: "A secondary follicle that is located in a lymph node" [CL:tm] +subset: pheno_slim +xref: EMAPA:35531 +xref: FMA:312352 +xref: MA:0000744 +is_a: UBERON:0001745 ! secondary nodular lymphoid tissue +is_a: UBERON:0010748 {source="MA"} ! lymph node follicle +intersection_of: UBERON:0001745 ! secondary nodular lymphoid tissue +intersection_of: part_of UBERON:0000029 ! lymph node +relationship: develops_from UBERON:0010395 ! lymph node primary follicle + +[Term] +id: UBERON:0010754 +name: germinal center +def: "A collection of activated B cells at the center of a secondary follicle, formed after B cells become activated and migrate to the center." [CL:tm, http://en.wikipedia.org/wiki/Germinal_center, https://orcid.org/0000-0002-6601-2165] +comment: A germinal center is a specialized microenvironment formed when activated B cells enter lymphoid follicles. Germinal centers are the foci for B cell proliferation and somatic hypermutation.[GO] +synonym: "central zone of follice" EXACT [CL:tm] +synonym: "light zone of follicle" EXACT [CL:tm] +synonym: "lymhpoid nodule" RELATED [CL:tm] +synonym: "nodule" RELATED [CL:tm] +synonym: "reaction center of follicle" EXACT [CL:tm] +xref: BTO:0003671 +xref: EV:0100051 +xref: Germinal:center +xref: http://linkedlifedata.com/resource/umls/id/C0282491 +xref: http://www.snomedbrowser.com/Codes/Details/64626006 +xref: MESH:D018858 +xref: NCIT:C13337 +xref: UMLS:C0282491 {source="ncithesaurus:Germinal_Center"} +is_a: UBERON:0001744 ! lymphoid tissue +relationship: part_of UBERON:0001745 ! secondary nodular lymphoid tissue + +[Term] +id: UBERON:0010755 +name: secondary follicle corona +def: "The part of the secondary follicle that surrounds the germinal center." [CL:tm, https://orcid.org/0000-0002-6601-2165] +synonym: "B cell corona" RELATED [] +synonym: "dark zone of follicle" EXACT [CL:tm] +synonym: "inactive zone of follicle" EXACT [CL:tm] +synonym: "mantle zone" RELATED [] +synonym: "peripheral zone of follicle" EXACT [CL:tm] +xref: http://linkedlifedata.com/resource/umls/id/C1512987 +xref: Mantle:zone +xref: NCIT:C33053 +xref: UMLS:C1512987 {source="ncithesaurus:Mantle_Zone"} +is_a: UBERON:0001744 ! lymphoid tissue +intersection_of: UBERON:0001744 ! lymphoid tissue +intersection_of: part_of UBERON:0001745 ! secondary nodular lymphoid tissue +intersection_of: surrounds UBERON:0010754 ! germinal center +relationship: part_of UBERON:0001745 ! secondary nodular lymphoid tissue +relationship: surrounds UBERON:0010754 ! germinal center + +[Term] +id: UBERON:0010756 +name: spleen follicular dendritic cell network +def: "The enmeshed group of antigen presenting cells with extensive dendritic processes in the spleen B cell follicle that present antigen to B cells during an immune response" [MP:0008473] +comment: The follicular dendritic cell network is often visualized by using the monoclonal antibody FDC-M2. +subset: pheno_slim +synonym: "FDC network" BROAD [MP:0008473] +synonym: "FDCN" BROAD [MP:0008473] +synonym: "spleen FDC network" EXACT [MP:0008473] +synonym: "splenic follicular dendritic cell network" EXACT [MP:0008473] +xref: EMAPA:37963 {source="MA:th"} +is_a: UBERON:0001744 ! lymphoid tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0004042 ! spleen secondary B follicle + +[Term] +id: UBERON:0010757 +name: rib 8 +def: "The eighth rib counting from the top of the rib cage down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Rib_8] +subset: defined_by_ordinal_series +synonym: "costa VIII" EXACT LATIN [] +synonym: "eighth rib" EXACT [FMA:8120] +synonym: "upper false rib" NARROW [NCBITaxon:9606, PMCID:PMC1327870] +xref: EMAPA:19536 +xref: FMA:8120 +xref: http://linkedlifedata.com/resource/umls/id/C1709954 +xref: http://www.snomedbrowser.com/Codes/Details/244663007 +xref: MA:0001408 +xref: NCIT:C52760 +xref: UMLS:C1709954 {source="ncithesaurus:Rib_8"} +is_a: UBERON:0002228 ! rib + +[Term] +id: UBERON:0010758 +name: subdivision of organism along appendicular axis +def: "A major subdivision of an organism that divides an organism along an axis perpedicular to the main body anterior-posterior axis. In vertebrates, this is typically a fin or limb segment. In insects, this includes segments of appendages such as antennae, as well as segments of the insect leg." [https://orcid.org/0000-0002-6601-2165] +subset: upper_level +synonym: "appendage segment" EXACT [FBbt:00007018] +synonym: "appendicular segment" EXACT [] +xref: FBbt:00007018 +is_a: UBERON:0000475 ! organism subdivision +relationship: part_of UBERON:0000026 ! appendage + +[Term] +id: UBERON:0010759 +name: equine distal sesamoid +def: "lies on the palmar aspect of the coffin joint between the second phalanx and third phalanx. articulates closely with the distal phalanx, to which it is connected by the impar ligament of the navicular bone. The impar ligament is very strong and permits relatively little motion between the navicular bone and the distal phalanx." [http://en.wikipedia.org/wiki/Equine_forelimb_anatomy#Distal_sesamoid, http://en.wikipedia.org/wiki/Navicular_bone#Horse_anatomy] +synonym: "distal sesamoid bone" RELATED [] +synonym: "navicular bone" RELATED INCONSISTENT [http://en.wikipedia.org/wiki/Equine_forelimb_anatomy#Distal_sesamoid] +xref: Horse_anatomy +xref: http://www.snomedbrowser.com/Codes/Details/370654009 +is_a: UBERON:0001479 ! sesamoid bone +is_a: UBERON:0011141 ! appendicular ossicle +is_a: UBERON:0011250 ! autopod bone + +[Term] +id: UBERON:0010760 +name: supraglenoid tubercle +def: "The supraglenoid tubercle is a region of the scapula to which the long head of the biceps brachii muscle attaches." [http://en.wikipedia.org/wiki/Supraglenoid_tubercle] +synonym: "supraglenoid tuberosity" EXACT [FMA:23263] +synonym: "tuberculum supraglenoidale" RELATED LATIN [http://en.wikipedia.org/wiki/Supraglenoid_tubercle] +xref: FMA:23263 +xref: Supraglenoid:tubercle +is_a: UBERON:0005813 {source="FMA"} ! tubercle +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0006633 ! coracoid process of scapula + +[Term] +id: UBERON:0010801 +name: calcaneum pre-cartilage condensation +def: "A calcaneum endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +synonym: "calcaneous pre-cartilage condensation" EXACT [] +xref: EMAPA:17736 +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0010695 ! mesenchyme of tarsal region +is_a: UBERON:0010886 ! hindlimb pre-cartilage condensation +is_a: UBERON:0015014 ! calcaneum endochondral element +intersection_of: UBERON:0015014 ! calcaneum endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010842 +name: calcaneum cartilage element +def: "A calcaneum endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +synonym: "calcaneous cartilage element" EXACT [] +xref: EMAPA:18143 +is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010695 ! mesenchyme of tarsal region +is_a: UBERON:0015014 ! calcaneum endochondral element +is_a: UBERON:0035129 ! pes cartilage element +intersection_of: UBERON:0015014 ! calcaneum endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010801 ! calcaneum pre-cartilage condensation + +[Term] +id: UBERON:0010843 +name: clavicle cartilage element +def: "A cartilaginous condensation that has the potential to develop into a clavicle." [OBOL:automatic] +xref: EMAPA:18342 +is_a: UBERON:0005863 ! cartilaginous condensation +intersection_of: UBERON:0005863 ! cartilaginous condensation +intersection_of: has_potential_to_develop_into UBERON:0001105 ! clavicle bone +relationship: develops_from UBERON:0010844 ! clavicle pre-cartilage condensation +relationship: has_potential_to_develop_into UBERON:0001105 ! clavicle bone +relationship: part_of UBERON:0007831 ! pectoral girdle skeleton + +[Term] +id: UBERON:0010844 +name: clavicle pre-cartilage condensation +def: "A pre-cartilage condensation that has the potential to develop into a clavicle." [OBOL:automatic] +xref: EMAPA:18026 +is_a: UBERON:0005866 ! pre-cartilage condensation +intersection_of: UBERON:0005866 ! pre-cartilage condensation +intersection_of: has_potential_to_develop_into UBERON:0001105 ! clavicle bone +relationship: has_potential_to_develop_into UBERON:0001105 ! clavicle bone +relationship: part_of UBERON:0007831 ! pectoral girdle skeleton + +[Term] +id: UBERON:0010846 +name: radius pre-cartilage condensation +def: "A pre-cartilage condensation that has the potential to develop into a radius bone." [OBOL:automatic] +xref: EHDAA2:0001586 +is_a: UBERON:0003327 ! mesenchyme of forearm +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015001 ! radius endochondral element +intersection_of: UBERON:0005866 ! pre-cartilage condensation +intersection_of: has_potential_to_develop_into UBERON:0001423 ! radius bone +relationship: develops_from UBERON:0006287 {source="EHDAA2"} ! radius-ulna pre-cartilage condensation +relationship: has_potential_to_develop_into UBERON:0001423 ! radius bone + +[Term] +id: UBERON:0010847 +name: ulna pre-cartilage condensation +def: "A pre-cartilage condensation that has the potential to develop into a ulna." [OBOL:automatic] +xref: EHDAA2:0002100 +xref: EHDAA:6226 +is_a: UBERON:0003327 ! mesenchyme of forearm +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015003 ! ulna endochondral element +intersection_of: UBERON:0005866 ! pre-cartilage condensation +intersection_of: has_potential_to_develop_into UBERON:0001424 ! ulna +relationship: develops_from UBERON:0006287 {source="EHDAA2"} ! radius-ulna pre-cartilage condensation +relationship: has_potential_to_develop_into UBERON:0001424 ! ulna + +[Term] +id: UBERON:0010848 +name: radius-ulna cartilage element +def: "A radius-ulna endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +synonym: "radio-ulna cartilage condensation" EXACT [EMAPA:17711] +xref: EMAPA:17711 +is_a: UBERON:0003327 ! mesenchyme of forearm +is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015002 ! radius-ulna endochondral element +intersection_of: UBERON:0015002 ! radius-ulna endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0006287 ! radius-ulna pre-cartilage condensation + +[Term] +id: UBERON:0010849 +name: tibia cartilage element +def: "A cartilaginous condensation that has the potential to develop into a tibia." [OBOL:automatic] +xref: EMAPA:18155 +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015004 ! tibia endochondral element +intersection_of: UBERON:0015004 ! tibia endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010850 ! tibia pre-cartilage condensation +relationship: part_of UBERON:0005259 {source="EMAPA"} ! lower leg mesenchyme + +[Term] +id: UBERON:0010850 +name: tibia pre-cartilage condensation +def: "A pre-cartilage condensation that has the potential to develop into a tibia." [OBOL:automatic] +xref: EHDAA2:0002036 +is_a: UBERON:0005259 ! lower leg mesenchyme +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015004 ! tibia endochondral element +intersection_of: UBERON:0005866 ! pre-cartilage condensation +intersection_of: has_potential_to_develop_into UBERON:0000979 ! tibia +relationship: has_potential_to_develop_into UBERON:0000979 ! tibia + +[Term] +id: UBERON:0010851 +name: fibula cartilage element +def: "A cartilaginous condensation that has the potential to develop into a fibula." [OBOL:automatic] +synonym: "fibulal cartilage condensation" EXACT [EMAPA:18154] +synonym: "fibular cartilage condensation" EXACT [EMAPA:18154] +synonym: "fibulra cartilage condensation" RELATED [EMAPA:18154] +xref: EMAPA:18154 +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015013 ! fibula endochondral element +intersection_of: UBERON:0015013 ! fibula endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010852 ! fibula pre-cartilage condensation +relationship: part_of UBERON:0005259 {source="EMAPA"} ! lower leg mesenchyme + +[Term] +id: UBERON:0010852 +name: fibula pre-cartilage condensation +def: "A pre-cartilage condensation that has the potential to develop into a fibula." [OBOL:automatic] +synonym: "fibulal pre-cartilage condensation" EXACT [] +synonym: "fibular pre-cartilage condensation" EXACT [] +xref: EHDAA2:0000509 +xref: EHDAA:6196 +is_a: UBERON:0005259 ! lower leg mesenchyme +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015013 ! fibula endochondral element +intersection_of: UBERON:0005866 ! pre-cartilage condensation +intersection_of: has_potential_to_develop_into UBERON:0001446 ! fibula +relationship: has_potential_to_develop_into UBERON:0001446 ! fibula + +[Term] +id: UBERON:0010853 +name: capitulum of humerus +def: "A smooth, rounded eminence on the lateral portion of the articular surface of the humerus. It articulates with the cupshaped depression on the head of the radius, and is limited to the front and lower part of the bone." [http://en.wikipedia.org/wiki/Capitulum_of_the_humerus] +synonym: "capitellum" RELATED [http://en.wikipedia.org/wiki/Capitulum_of_the_humerus] +synonym: "capitulum humeri" RELATED LATIN [http://en.wikipedia.org/wiki/Capitulum_of_the_humerus] +synonym: "capitulum of humerus" RELATED [http://en.wikipedia.org/wiki/Capitulum_of_the_humerus] +synonym: "dorsal condyle of the humerus" RELATED SENSU [http://en.wikipedia.org/wiki/Capitulum_of_the_humerus] +synonym: "humeral capitulum" EXACT [FMA:23373] +xref: FMA:23373 +xref: http://en.wikipedia.org/wiki/Capitulum_of_the_humerus +xref: http://www.snomedbrowser.com/Codes/Details/282816008 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +relationship: part_of UBERON:0009988 {source="FMA"} ! condyle of humerus + +[Term] +id: UBERON:0010854 +name: skin of front of neck +def: "A skin of neck that is part of a throat." [OBOL:automatic] +synonym: "skin of anterior neck" EXACT [FMA:23023] +synonym: "skin of anterior part of neck" EXACT [FMA:23023] +synonym: "skin of anterior portion of neck" EXACT [FMA:23023] +synonym: "skin of throat" EXACT [] +xref: FMA:23023 +xref: http://www.snomedbrowser.com/Codes/Details/181482005 +is_a: UBERON:0001417 ! skin of neck +intersection_of: UBERON:0001417 ! skin of neck +intersection_of: part_of UBERON:0000341 ! throat +relationship: part_of UBERON:0000341 ! throat +relationship: part_of UBERON:0011154 ! gular region + +[Term] +id: UBERON:0010855 +name: skin of forelimb wing +def: "A zone of skin that is part of a forelimb wing." [OBOL:automatic] +is_a: UBERON:0003531 ! forelimb skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0000024 ! forelimb wing +relationship: part_of UBERON:0000024 ! forelimb wing + +[Term] +id: UBERON:0010856 +name: patagium +def: "A membranous extension of skin that forms the wing material in animals such as bats. It typically comprises a number of patagial segments, stretching from the side of the body between the forelimb digits and sometimes the hindlimbs." [http://animals.about.com/od/zoologytermsktoz/g/patagium.htm, http://en.wikipedia.org/wiki/Patagium, http://www.brown.edu/Departments/EEB/EML/background/wing_anatomy.htm] +synonym: "flight membrane" RELATED [] +synonym: "patagia" RELATED PLURAL [] +xref: http://en.wikipedia.org/wiki/Patagium +is_a: UBERON:0000094 ! membrane organ +relationship: part_of UBERON:0000023 ! wing + +[Term] +id: UBERON:0010858 +name: inter limb-segment region +comment: Examples - region between digits in a human embryo; segments of a bat's patagium +synonym: "interlimb" RELATED [] +is_a: UBERON:0034929 ! external soft tissue zone +relationship: connects UBERON:0002529 {minCardinality="2", maxCardinality="2"} ! limb segment + +[Term] +id: UBERON:0010861 +name: propatagium +def: "In bats and pterosaurs, thin web of skin that extends from the shoulder to the wrist anterior to the upper arm and forearm, and is fixed on the neck or skull." [http://palaeos.com/vertebrates/glossary/glossaryPo.html] +is_a: UBERON:0010858 ! inter limb-segment region +relationship: part_of UBERON:0010856 ! patagium + +[Term] +id: UBERON:0010862 +name: dactylopatagium +def: "An interdigital region that is part of a patagium." [OBOL:automatic] +is_a: UBERON:0006012 ! interdigital region +intersection_of: UBERON:0006012 ! interdigital region +intersection_of: part_of UBERON:0010856 ! patagium +relationship: part_of UBERON:0010856 ! patagium + +[Term] +id: UBERON:0010863 +name: dactylopatagium brevis +def: "A dactylopatagium that is connected_to a manual digit 1 and connected_to a manual digit 2." [OBOL:automatic] +is_a: UBERON:0010862 ! dactylopatagium +intersection_of: UBERON:0010862 ! dactylopatagium +intersection_of: connected_to UBERON:0001463 ! manual digit 1 +intersection_of: connected_to UBERON:0003622 ! manual digit 2 +relationship: connected_to UBERON:0001463 ! manual digit 1 +relationship: connected_to UBERON:0003622 ! manual digit 2 + +[Term] +id: UBERON:0010864 +name: dactylopatagium minus +def: "A dactylopatagium that is connected_to a manual digit 2 and connected_to a manual digit 3." [OBOL:automatic] +is_a: UBERON:0010862 ! dactylopatagium +intersection_of: UBERON:0010862 ! dactylopatagium +intersection_of: connected_to UBERON:0003622 ! manual digit 2 +intersection_of: connected_to UBERON:0003623 ! manual digit 3 +relationship: connected_to UBERON:0003622 ! manual digit 2 +relationship: connected_to UBERON:0003623 ! manual digit 3 + +[Term] +id: UBERON:0010865 +name: dactylopatagium medius +def: "A dactylopatagium that is connected_to a manual digit 3 and connected_to a manual digit 4." [OBOL:automatic] +is_a: UBERON:0010862 ! dactylopatagium +intersection_of: UBERON:0010862 ! dactylopatagium +intersection_of: connected_to UBERON:0003623 ! manual digit 3 +intersection_of: connected_to UBERON:0003624 ! manual digit 4 +relationship: connected_to UBERON:0003623 ! manual digit 3 +relationship: connected_to UBERON:0003624 ! manual digit 4 + +[Term] +id: UBERON:0010866 +name: dactylopatagium major +def: "A dactylopatagium that is connected_to a manual digit 4 and connected_to a manual digit 5." [OBOL:automatic] +is_a: UBERON:0010862 ! dactylopatagium +intersection_of: UBERON:0010862 ! dactylopatagium +intersection_of: connected_to UBERON:0003624 ! manual digit 4 +intersection_of: connected_to UBERON:0003625 ! manual digit 5 +relationship: connected_to UBERON:0003624 ! manual digit 4 +relationship: connected_to UBERON:0003625 ! manual digit 5 + +[Term] +id: UBERON:0010867 +name: plagiopatagium +def: "A flight membrane running between the body and the limb or digits." [http://palaeos.com/vertebrates/glossary/glossaryP.html] +synonym: "brachiopatagium" RELATED [http://en.wikipedia.org/wiki/Patagium] +is_a: UBERON:0010862 ! dactylopatagium +is_a: UBERON:0010868 ! uropropatagium +intersection_of: UBERON:0010862 ! dactylopatagium +intersection_of: connected_to UBERON:0002389 ! manual digit +intersection_of: connected_to UBERON:0003823 ! hindlimb zeugopod +intersection_of: part_of UBERON:0010856 ! patagium +relationship: connected_to UBERON:0002389 ! manual digit + +[Term] +id: UBERON:0010868 +name: uropropatagium +def: "The membrane that is stretches between the legs of bats, used for flight, and in the case of insect-eating bats, for catching prey." [http://en.wikipedia.org/wiki/Interfemoral_membrane] +synonym: "cruropatagium" RELATED [http://en.wikipedia.org/wiki/Patagium] +synonym: "interfemoral membrane" EXACT [] +synonym: "interfemoral wing membrane" EXACT [] +xref: Interfemoral:membrane +is_a: UBERON:0010858 ! inter limb-segment region +intersection_of: UBERON:0010858 ! inter limb-segment region +intersection_of: connected_to UBERON:0003823 ! hindlimb zeugopod +intersection_of: part_of UBERON:0010856 ! patagium +relationship: connected_to UBERON:0003823 ! hindlimb zeugopod +relationship: part_of UBERON:0010856 ! patagium + +[Term] +id: UBERON:0010869 +name: calcar +def: "A spur of cartilage arising from inner side of ankle and running along part of outer interfemoral membrane in bats" [http://en.wikipedia.org/wiki/Calcar] +synonym: "calcaneum" RELATED INCONSISTENT [http://en.wikipedia.org/wiki/Calcar] +synonym: "calcar spur" EXACT [] +xref: http://en.wikipedia.org/wiki/Calcar +is_a: UBERON:0007844 ! cartilage element +disjoint_from: UBERON:0035970 ! calcar avis of the lateral ventricle +relationship: part_of UBERON:0010868 ! uropropatagium + +[Term] +id: UBERON:0010878 +name: humeral patagium +is_a: UBERON:0010855 ! skin of forelimb wing + +[Term] +id: UBERON:0010879 +name: tusk +def: "A calcareous tooth that is elongated and protrudes from the mouth." [http://orcid.org/0000-0002-6601-2165] +xref: http://en.wikipedia.org/wiki/Tusk +xref: http://www.snomedbrowser.com/Codes/Details/54040005 +is_a: UBERON:0001091 ! calcareous tooth + +[Term] +id: UBERON:0010880 +name: gular fold +def: "A transverse fold of skin across the throat (Peters 1964)." [http://imnh.isu.edu/digitalatlas/bio/glsry.htm, http://sourceforge.net/tracker/?func=detail&aid=3414172&group_id=76834&atid=994764] +synonym: "gular sac" RELATED [http://en.wikipedia.org/wiki/Gular_fold] +synonym: "gular skin" RELATED [http://en.wikipedia.org/wiki/Gular_fold] +synonym: "throat sac" RELATED [http://en.wikipedia.org/wiki/Gular_fold] +xref: AAO:0010238 +xref: Gular:skin +is_a: UBERON:0010854 ! skin of front of neck +relationship: present_in_taxon NCBITaxon:9590 {notes="gular sac", source="http://en.wikipedia.org/wiki/Siamang"} + +[Term] +id: UBERON:0010881 +name: limb cartilage element +def: "A skeletal element that is part of a limb and composed of cartilage tissue." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015061 ! limb endochondral element +intersection_of: UBERON:0015061 ! limb endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010882 ! limb bone pre-cartilage condensation + +[Term] +id: UBERON:0010882 +name: limb bone pre-cartilage condensation +def: "A skeletal element that is part of a limb and composed of pre-cartilage tissue." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0015061 ! limb endochondral element +intersection_of: UBERON:0015061 ! limb endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010883 +name: forelimb cartilage element +def: "A cartilaginous condensation that has the potential to develop into a forelimb bone." [OBOL:automatic] +subset: grouping_class +synonym: "forelimb wing cartilaginous condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +synonym: "wing cartilaginous condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +xref: EMAPA:32626 +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0015021 ! forelimb endochondral element +intersection_of: UBERON:0015021 ! forelimb endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010884 ! forelimb bone pre-cartilage condensation + +[Term] +id: UBERON:0010884 +name: forelimb bone pre-cartilage condensation +def: "A pre-cartilage condensation that has the potential to develop into a forelimb bone." [OBOL:automatic] +subset: grouping_class +synonym: "wing bone pre-cartilage condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +xref: EMAPA:32625 +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation +is_a: UBERON:0015021 ! forelimb endochondral element +intersection_of: UBERON:0015021 ! forelimb endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010885 +name: hindlimb cartilage element +def: "A cartilaginous condensation that has the potential to develop into a hindlimb bone." [OBOL:automatic] +synonym: "hindlimb cartilage condensation" EXACT [EMAPA:32632] +xref: EMAPA:32632 +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0015022 ! hindlimb endochondral element +intersection_of: UBERON:0015022 ! hindlimb endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010886 ! hindlimb pre-cartilage condensation + +[Term] +id: UBERON:0010886 +name: hindlimb pre-cartilage condensation +def: "A pre-cartilage condensation that has the potential to develop into a hindlimb bone." [OBOL:automatic] +synonym: "hindlimb pre-cartilage condensation" EXACT [EMAPA:32638] +xref: EMAPA:32638 +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation +is_a: UBERON:0015022 ! hindlimb endochondral element +intersection_of: UBERON:0015022 ! hindlimb endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0010887 +name: tragus +def: "A small pointed eminence of the external ear, situated in front of the concha, and projecting backward over the meatus." [http://en.wikipedia.org/wiki/Tragus_(ear)] +subset: pheno_slim +synonym: "tragal part of pinna" EXACT [FMA:60998] +xref: FMA:60998 +xref: http://linkedlifedata.com/resource/umls/id/C0229312 +xref: http://www.snomedbrowser.com/Codes/Details/362541003 +xref: NCIT:C33801 +xref: Tragus:(ear) +xref: UMLS:C0229312 {source="ncithesaurus:Tragus"} +is_a: UBERON:0001444 ! subdivision of head +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0016611 {source="Wikipedia-uncited"} ! auditory hillocks, pharyngeal arch 1 derived +relationship: part_of UBERON:0001757 {source="FMA"} ! pinna + +[Term] +id: UBERON:0010888 +name: obsolete seta +def: "A hair-like unicellular external process of the body wall or any derivative of the latter; a hair; a bristle." [BTO:0004212] +comment: Obsoleted as the term 'seta' refers to a variety of different structures. For insect chaetae, consider the arthropod anatomy ontology. +synonym: "bristle" RELATED [BTO:0004212] +synonym: "chaeta" RELATED [MIAA:0000152] +synonym: "sensory bristle" RELATED [MIAA:0000152] +is_obsolete: true +consider: BTO:0004212 +consider: INSECT:0000114 +consider: MIAA:0000152 + +[Term] +id: UBERON:0010889 +name: ectethmoid +def: "either of two lateral parts of the ethmoid bone that form part of the anterior wall of the orbit" [http://www.merriam-webster.com/medical/ectethmoid] +synonym: "dorsal nasal capsule" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/21270050] +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0001679 ! ethmoid bone + +[Term] +id: UBERON:0010890 +name: pelvic complex muscle +def: "Muscles of the pelvic girdle, hindlimb or pelvic fin." [https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "lower limb muscle" RELATED INCONSISTENT [FMA:9622] +synonym: "muscle of lower limb" RELATED INCONSISTENT [FMA:9622] +synonym: "muscle of pelvic girdle and leg" RELATED [] +synonym: "pelvic girdle and hind limb muscles" EXACT [AAO:0000218] +synonym: "pelvic girdle or hind limb muscle" NARROW [https://orcid.org/0000-0002-6601-2165] +synonym: "pelvic girdle or posterior limb muscle" NARROW [https://orcid.org/0000-0002-6601-2165] +xref: AAO:0000218 +xref: EMAPA:32634 +xref: FMA:9622 +xref: MA:0000663 +is_a: UBERON:0014892 ! skeletal muscle organ +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0010709 ! pelvic complex +relationship: part_of UBERON:0014792 {source="prolog"} ! musculature of pelvic complex + +[Term] +id: UBERON:0010891 +name: pectoral complex muscle +def: "A muscle of a pectoral girdle, pectoral fin or anterior limb." [https://orcid.org/0000-0002-6601-2165] +synonym: "muscle of pectoral girdle and limb" RELATED [] +synonym: "muscle of pectoral girdle and wing" NARROW SENSU [NCBITaxon:8782] +synonym: "muscle of upper limb" NARROW INCONSISTENT [FMA:9621] +synonym: "pectoral girdle and fore limb muscles" EXACT [AAO:0010687] +synonym: "upper limb muscle" NARROW INCONSISTENT [FMA:9621] +xref: AAO:0010687 +xref: EMAPA:32624 +xref: FMA:9621 +xref: MA:0000615 +is_a: UBERON:0014892 ! skeletal muscle organ +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0010708 ! pectoral complex +relationship: part_of UBERON:0014793 {source="prolog"} ! musculature of pectoral complex + +[Term] +id: UBERON:0010892 +name: mesethmoid element +def: "An endochondral element of the nasal capsule that forms septum between nasal capsules and usually remains unossified in mammals" [ISBN:0073040584] +synonym: "mesethmoid" RELATED [AAO:0000303] +synonym: "ventral nasal capsule" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/21270050] +xref: AAO:0000303 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 {source="TAO"} ! endochondral element +relationship: develops_from UBERON:0005945 {source="TAO"} ! neurocranial trabecula +relationship: dubious_for_taxon NCBITaxon:8292 {editor_note="check AAO"} +relationship: part_of UBERON:0011241 {source="ISBN:0073040584"} ! ethmoid region + +[Term] +id: UBERON:0010893 +name: median external naris +alt_id: UBERON:0012123 +def: "Am unpaired external naris that lies in the midline of the head." [OBOL:automatic] +subset: cyclostome_subset +synonym: "median anterior naris" EXACT [] +synonym: "median nostril" EXACT [] +synonym: "nasohypophysial opening" EXACT [http://tolweb.org/Hyperoartia] +is_a: UBERON:0005928 ! external naris +intersection_of: UBERON:0005928 ! external naris +intersection_of: intersects_midsagittal_plane_of UBERON:0000033 ! head +relationship: intersects_midsagittal_plane_of UBERON:0000033 ! head +relationship: present_in_taxon NCBITaxon:7762 + +[Term] +id: UBERON:0010894 +name: keratinous tooth +comment: The hagfish's jawless mouth contains two parallel rows of pointed keratinous teeth +subset: cyclostome_subset +synonym: "horny denticle" EXACT [http://tolweb.org/Hyperoartia] +is_a: UBERON:0003913 ! tooth-like structure +relationship: present_in_taxon NCBITaxon:117569 +relationship: present_in_taxon NCBITaxon:7762 + +[Term] +id: UBERON:0010895 +name: sequential hermaphroditic organism +def: "Hermaphroditic organism that produces gametes first of one sex, and then later of the other sex." [CARO:0000045] +synonym: "consecutive hermaphroditic organism" RELATED [CARO:0000045] +xref: AAO:0010037 +xref: BILA:0000045 +xref: CARO:0000045 +xref: HAO:0000045 +xref: TADS:0000608 +is_a: UBERON:0007197 {source="CARO"} ! hermaphroditic organism + +[Term] +id: UBERON:0010896 +name: piston cartilage +subset: cyclostome_subset +synonym: "lamprey tongue" RELATED [] +synonym: "lamprey tongue cartilage" RELATED [] +synonym: "lingual cartilage" EXACT [] +synonym: "piston" RELATED [] +is_a: UBERON:0007844 ! cartilage element +relationship: develops_from UBERON:0034939 ! future piston +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0010898 +name: gastralium +def: "Dermal element that arises via intramembranous ossification and are developmentally distinct from true ribs that articulate with the vertebral column." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000127] +synonym: "abdominal rib" EXACT [ISBN:0073040584, VSAO:curator] +synonym: "belly rib" EXACT [VSAO:curator] +synonym: "gastralia" EXACT PLURAL [VSAO:0000127] +xref: http://en.wikipedia.org/wiki/Gastralium +xref: VSAO:0000127 +is_a: UBERON:0003828 ! abdominal segment bone +is_a: UBERON:0005172 ! abdomen element +is_a: UBERON:0008907 {source="VSAO"} ! dermal bone +relationship: part_of UBERON:0006635 {source="ISBN:0073040584"} ! anterior abdominal wall +relationship: part_of UBERON:0014478 ! rib skeletal system +relationship: present_in_taxon NCBITaxon:8508 {source="Wikipedia"} + +[Term] +id: UBERON:0010899 +name: synchronous hermaphroditic organism +def: "Hermaphroditic organism that produces both male and female gametes at the same time." [CARO:0000046] +synonym: "serially hermaphroditic organism" RELATED [CARO:0000046] +synonym: "simultaneous hermaphroditic organism" RELATED [https://orcid.org/0000-0002-6601-2165] +xref: AAO:0010046 +xref: BILA:0000046 +xref: CARO:0000046 +xref: HAO:0000046 +xref: TADS:0000609 +is_a: UBERON:0007197 {source="CARO"} ! hermaphroditic organism +intersection_of: UBERON:0000468 ! multicellular organism +intersection_of: has_part UBERON:0000473 ! testis +intersection_of: has_part UBERON:0000992 ! ovary +relationship: has_part UBERON:0000473 ! testis +relationship: has_part UBERON:0000992 ! ovary + +[Term] +id: UBERON:0010900 +name: tarsometatarsus cartilage element +def: "A cartilaginous condensation that has the potential to develop into a tarsometatarsus." [OBOL:automatic] +is_a: UBERON:0015012 ! tarsometatarsus endochondral element +is_a: UBERON:0035129 ! pes cartilage element +intersection_of: UBERON:0015012 ! tarsometatarsus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010901 ! tarsometatarsus pre-cartilage condensation + +[Term] +id: UBERON:0010901 +name: tarsometatarsus pre-cartilage condensation +def: "A pre-cartilage condensation that has the potential to develop into a tarsometatarsus." [OBOL:automatic] +is_a: UBERON:0003860 ! hindlimb mesenchyme +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015012 ! tarsometatarsus endochondral element +intersection_of: UBERON:0005866 ! pre-cartilage condensation +intersection_of: has_potential_to_develop_into UBERON:0008195 ! tarsometatarsus +relationship: has_potential_to_develop_into UBERON:0008195 ! tarsometatarsus + +[Term] +id: UBERON:0010902 +name: tibiotarsus cartilage element +def: "A cartilaginous condensation that has the potential to develop into a tibiotarsus." [OBOL:automatic] +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015011 ! tibiotarsus endochondral element +intersection_of: UBERON:0015011 ! tibiotarsus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0010903 ! tibiotarsus pre-cartilage condensation + +[Term] +id: UBERON:0010903 +name: tibiotarsus pre-cartilage condensation +def: "A pre-cartilage condensation that has the potential to develop into a tibiotarsus." [OBOL:automatic] +is_a: UBERON:0003860 ! hindlimb mesenchyme +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015011 ! tibiotarsus endochondral element +intersection_of: UBERON:0005866 ! pre-cartilage condensation +intersection_of: has_potential_to_develop_into UBERON:0008194 ! tibiotarsus +relationship: has_potential_to_develop_into UBERON:0008194 ! tibiotarsus + +[Term] +id: UBERON:0010905 +name: clavicle bone primordium +def: "A primordium that develops into a clavicle bone." [https://github.com/obophenotype/uberon/issues/327] +comment: lateral part derives from a fish dermal bone while the medial part comes from a spur off the manubrium endochondral bone[JB] +synonym: "clavicle primordium" EXACT [] +xref: EHDAA2:0000254 +is_a: UBERON:0001048 ! primordium +intersection_of: UBERON:0001048 ! primordium +intersection_of: has_potential_to_develop_into UBERON:0001105 ! clavicle bone +relationship: develops_from UBERON:0006210 {source="EHDAA2"} ! body-wall mesenchyme +relationship: has_developmental_contribution_from UBERON:0002342 {editor="mah", notes="shown in mouse", source="PMC1352163"} ! neural crest +relationship: has_potential_to_develop_into UBERON:0001105 ! clavicle bone +relationship: part_of UBERON:0007831 {source="EHDAA2"} ! pectoral girdle skeleton + +[Term] +id: UBERON:0010907 +name: parafibula +def: "third bone of the lower leg, normally restricted to the area of the knee, in multuberculates, monotremes and some therians" [http://palaeos.com/vertebrates/glossary/glossaryP.html#P] +is_a: UBERON:0004251 ! hindlimb zeugopod bone +relationship: present_in_taxon NCBITaxon:9255 + +[Term] +id: UBERON:0010908 +name: paraglossale +def: "An arrowhead-shaped bone in the avian hyoid apparatus which forms the base of the tongue" [http://palaeos.com/vertebrates/glossary/glossaryP.html#P] +synonym: "paraglossale bone" EXACT [] +is_a: UBERON:0001474 ! bone element +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: located_in UBERON:0010033 ! posterior part of tongue +relationship: part_of UBERON:0010272 ! hyoid apparatus + +[Term] +id: UBERON:0010910 +name: opisthotic +def: "Posterior ossification of the otic capsule." [AAO:0010835, http://palaeos.com/vertebrates/bones/braincase/opisthotic.html] +comment: see TAO:0000474 - intercalar "Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal." +xref: AAO:0010835 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004637 {source="AAO"} ! otic capsule + +[Term] +id: UBERON:0010911 +name: ossicle +def: "Skeletal element that is often isolated, small, and variable in composition." [PSPUB:0000169, VSAO:0000132] +comment: Ossicles are composed of a combination skeletal tissues, including bone, calcified cartilage, hyaline cartilage, etc, and exhibit variable development across species. Ossicles are not necessarily jointed, and examples include the menisci of synovial joints, 'Panda's thumb' (radial sesamoid), cardiac skeletal elements, sclerotic bones, middle ear ossicles, and sesamoids. +xref: http://en.wikipedia.org/wiki/Ossicles +xref: VSAO:0000132 +is_a: UBERON:0004765 {source="VSAO"} ! skeletal element + +[Term] +id: UBERON:0010912 +name: subdivision of skeleton +def: "Anatomical cluster consisting of the skeletal elements (i.e. bone elements, cartilage elements, cartilage condensations) that are part of an individual subdivision of the organism. Excludes joints." [https://orcid.org/0000-0002-6601-2165, UBERONREF:0000003] +subset: non_informative +synonym: "skeletal subdivision" EXACT [VSAO:0000042] +synonym: "subdivision of skeleton (in vivo)" RELATED [FMA:23879] +xref: FMA:23879 +xref: http://www.snomedbrowser.com/Codes/Details/129140006 +xref: VSAO:0000042 +is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision +relationship: part_of UBERON:0000075 {source="UBERONREF:0000003"} ! subdivision of skeletal system +relationship: part_of UBERON:0004288 {source="VSAO"} ! skeleton + +[Term] +id: UBERON:0010913 +name: vertebral element +alt_id: UBERON:0015005 +def: "Skeletal element that forms around the notochord and is part of the vertebral column." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, https://github.com/obophenotype/uberon/issues/294, VSAO:0000184] +synonym: "vertebra element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "vertebra endochondral element" NARROW [https://github.com/obophenotype/uberon/issues/82] +synonym: "vertebra skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "vertebral endochondral element" NARROW [https://github.com/obophenotype/uberon/issues/82] +xref: VHOG:0001143 +xref: VSAO:0000184 +is_a: UBERON:0004765 {source="https://github.com/obophenotype/uberon/issues/82", source="VSAO"} ! skeletal element +relationship: develops_from UBERON:0003089 {source="cjm"} ! sclerotome +relationship: part_of UBERON:0001130 {source="VSAO"} ! vertebral column + +[Term] +id: UBERON:0010921 +name: thyrohyoid ligament +xref: FMA:55135 +xref: http://linkedlifedata.com/resource/umls/id/C0225534 +xref: http://www.snomedbrowser.com/Codes/Details/279551000 +xref: NCIT:C33779 +xref: UMLS:C0225534 {source="ncithesaurus:Thyrohyoid_Ligament"} +is_a: UBERON:0008845 {source="FMA"} ! nonskeletal ligament + +[Term] +id: UBERON:0010925 +name: median thyrohyoid ligament +def: "The middle thicker part of the thyrohyoid membrane is termed the median thyrohyoid ligament (middle hyothyroid ligament, middle thyrohyoid ligament), its lateral thinner portions are pierced by the superior laryngeal vessels and the internal branch of the superior laryngeal nerve. Its anterior surface is in relation with the Thyreohyoideus, Sternohyoideus, and Omohyoideus, and with the body of the hyoid bone" [http://en.wikipedia.org/wiki/Median_thyrohyoid_ligament] +synonym: "ligamentum thyrohyoideum medianum" EXACT [] +synonym: "middle thyrohyoid ligament" EXACT [FMA:55138] +xref: FMA:55138 +xref: http://en.wikipedia.org/wiki/Median_thyrohyoid_ligament +xref: http://linkedlifedata.com/resource/umls/id/C0225535 +xref: http://www.snomedbrowser.com/Codes/Details/279554008 +xref: NCIT:C33128 +xref: UMLS:C0225535 {source="ncithesaurus:Middle_Thyrohyoid_Ligament"} +is_a: UBERON:0010921 {source="FMA"} ! thyrohyoid ligament + +[Term] +id: UBERON:0010926 +name: lateral thyrohyoid ligament +def: "The lateral thyrohyoid ligament (lateral hyothyroid ligament) is a round elastic cord, which forms the posterior border of the hyothyroid membrane and passes between the tip of the superior cornu of the thyroid cartilage and the extremity of the greater cornu of the hyoid bone. The recurrent laryngeal nerve typical lies lateral to this ligament" [http://en.wikipedia.org/wiki/Lateral_thyrohyoid_ligament] +synonym: "ligamentum hyothyreoideum laterale" EXACT [] +synonym: "ligamentum thyrohyoideum laterale" EXACT [] +xref: FMA:55139 +xref: http://en.wikipedia.org/wiki/Lateral_thyrohyoid_ligament +xref: http://linkedlifedata.com/resource/umls/id/C0458565 +xref: http://www.snomedbrowser.com/Codes/Details/279555009 +xref: NCIT:C32950 +xref: UMLS:C0458565 {source="ncithesaurus:Lateral_Thyrohyoid_Ligament"} +is_a: UBERON:0010921 {source="FMA"} ! thyrohyoid ligament + +[Term] +id: UBERON:0010927 +name: thyroepiglotticus muscle +def: "fibers of the thyroarytenoid muscle that continue to the margin of the epiglottis; it closes the inlet to the larynx." [http://en.wikipedia.org/wiki/Thyroepiglottic_muscle, http://medical-dictionary.thefreedictionary.com/thyroepiglottic+muscle] +synonym: "pars thyroepiglottica (musculus thyroarytenoideus)" EXACT [FMA:46594] +synonym: "pars thyroepiglottica musculi thyroarytenoidei" RELATED LATIN [http://en.wikipedia.org/wiki/Thyroepiglottic_muscle] +synonym: "pars thyroepiglottica musculus thyroarytenoidei" EXACT LATIN [FMA:TA] +synonym: "thyro-epiglottic part of thyro-arytenoid" EXACT [FMA:46594] +synonym: "thyroepiglottic" EXACT [] +synonym: "thyroepiglottic muscle" EXACT [FMA:46594] +synonym: "thyroepiglotticus" EXACT [FMA:46594] +synonym: "thyroepiglottus" EXACT [] +synonym: "thyroepiglottus muscle" EXACT [] +xref: FMA:46594 +xref: http://linkedlifedata.com/resource/umls/id/C0224182 +xref: http://www.snomedbrowser.com/Codes/Details/244819001 +xref: NCIT:C33778 +xref: Thyroepiglottic:muscle +xref: UMLS:C0224182 {source="ncithesaurus:Thyroepiglottic_Muscle"} +is_a: UBERON:0001568 {source="ncithesaurus"} ! muscle of larynx +relationship: part_of UBERON:0008576 {source="FMA"} ! thyro-arytenoid + +[Term] +id: UBERON:0010928 +name: cricopharyngeus muscle +def: "The cricopharyngeus is a pharyngeal arch 4/6 muscle that participates in oral/pharyngeal behaviors and is innervated by the pharyngeal plexus and the recurrent laryngeal n. (from Vagus, CN X), and is an integral part of the pharyngeal tube, and attaches to the cricoid cartilage and the midline raphe. It acts as a sphincter between the pharynx and esophagus." [MFMO:0000009] +comment: muscle belly +synonym: "cricopharyngeal part" BROAD [] +synonym: "cricopharyngeal part of inferior constrictor pharyngeus" EXACT [FMA:46661] +synonym: "cricopharyngeal part of inferior pharyngeal constrictor" EXACT [FMA:46661] +synonym: "cricopharyngeal part of inferior pharyngeal constrictor muscle" EXACT [] +synonym: "cricopharyngeus" EXACT [FMA:46661] +synonym: "cricopharyngeus portion of the inferior pharyngeal constrictor" EXACT [] +synonym: "musculus cricopharyngeus" EXACT LATIN [FMA:46661, FMA:TA] +synonym: "pars cricopharyngea (musculus constrictor pharyngis inferior)" EXACT [FMA:46661] +synonym: "pars cricopharyngea musculus constrictoris pharyngis inferioris" EXACT LATIN [FMA:TA] +xref: FMA:46661 +xref: http://linkedlifedata.com/resource/umls/id/C0224214 +xref: http://www.snomedbrowser.com/Codes/Details/244804002 +xref: MFMO:0000009 +xref: NCIT:C32401 +xref: UMLS:C0224214 {source="ncithesaurus:Cricopharyngeus_Muscle"} +is_a: UBERON:0000933 ! pharyngeal muscle +is_a: UBERON:0003831 ! respiratory system muscle +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010938 ! muscle belly +relationship: has_muscle_origin UBERON:0002375 ! cricoid cartilage +relationship: innervated_by UBERON:0001759 {source="Wikipedia"} ! vagus nerve +relationship: part_of UBERON:0001570 {source="FMA"} ! inferior pharyngeal constrictor +relationship: part_of UBERON:0007268 ! upper esophageal sphincter + +[Term] +id: UBERON:0010929 +name: stapedius pre-muscle condensation +xref: EHDAA2:0001909 +is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation +is_a: UBERON:0009506 ! mesenchyme of middle ear + +[Term] +id: UBERON:0010930 +name: interhyoideus +synonym: "interhyoideus muscle" EXACT [] +xref: AAO:0010649 +is_a: UBERON:0005493 ! hyoid muscle + +[Term] +id: UBERON:0010931 +name: intermandibularis +def: "Is a mandibular muscle that develops into the ventral intermandibularis anterior and posterior muscles." [ZFA:0000369] +synonym: "intermandibular muscle" RELATED [ZFIN:ZDB-PUB-060921-12] +synonym: "intermandibularis muscle" EXACT [] +xref: AAO:0010647 +xref: TAO:0000369 +xref: ZFA:0000369 +is_a: UBERON:0001630 ! muscle organ + +[Term] +id: UBERON:0010932 +name: crico-arytenoid muscle +def: "Cricoarytenoid muscles are muscles that connect the cricoid cartilage and arytenoid cartilage. More specifically, it can refer to: Posterior cricoarytenoid muscle Lateral cricoarytenoid muscle" [http://en.wikipedia.org/wiki/Cricoarytenoid_muscle] +subset: grouping_class +subset: non_informative +synonym: "crico-arytenoid" EXACT [http://en.wikipedia.org/wiki/Cricoarytenoid_muscle] +synonym: "cricoarytenoid" EXACT [http://en.wikipedia.org/wiki/Cricoarytenoid_muscle] +synonym: "cricoarytenoid muscle" EXACT [http://en.wikipedia.org/wiki/Cricoarytenoid_muscle] +synonym: "cricoarytenoideus" EXACT [] +xref: Cricoarytenoid:muscle +xref: EMAPA:37498 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C0448336 +xref: http://www.snomedbrowser.com/Codes/Details/244811003 +xref: MA:0002283 +xref: NCIT:C32398 +xref: UMLS:C0448336 {source="ncithesaurus:Cricoarytenoid_Muscle"} +is_a: UBERON:0006328 {source="FMA"} ! laryngeal intrinsic muscle +relationship: has_muscle_insertion UBERON:0001740 {source="dbpedia"} ! arytenoid cartilage +relationship: has_muscle_origin UBERON:0002375 {source="dbpedia"} ! cricoid cartilage +relationship: innervated_by UBERON:0003716 {source="dbpedia"} ! recurrent laryngeal nerve + +[Term] +id: UBERON:0010933 +name: orbicularis oris muscle +def: "The orbicularis oris is a superficial facial muscle with fibers that encircle the opening of the oral cavity that attaches to the maxilla, mandible, skin and modiolus, and that participates in oral/pharyngeal behaviors, and is innervated by the facial nerve (CN VII)." [FEED:rd, http://www.feedexp.org/wiki/Mammalian_Muscle_Ontology_Workshop, https://doi.org/10.1002/ar.21355, https://doi.org/10.1111/j.1469-7580.2009.01111.x, MFMO:0000058] +synonym: "incisivii labii inferioris" RELATED [http://en.wikipedia.org/wiki/Orbicularis_oris_muscle] +synonym: "incisivii labii superioris" RELATED [http://en.wikipedia.org/wiki/Orbicularis_oris_muscle] +synonym: "musculus orbicularis oris" RELATED LATIN [http://en.wikipedia.org/wiki/Orbicularis_oris_muscle] +synonym: "nasolabialis muscle" RELATED [http://en.wikipedia.org/wiki/Orbicularis_oris_muscle] +synonym: "orbicularis oris" EXACT [FMA:46841] +synonym: "orbicularis oris" RELATED [http://en.wikipedia.org/wiki/Orbicularis_oris_muscle] +xref: FMA:46841 +xref: http://en.wikipedia.org/wiki/Orbicularis_oris_muscle +xref: http://www.snomedbrowser.com/Codes/Details/244749008 +xref: MFMO:0000058 +is_a: UBERON:0001577 ! facial muscle +intersection_of: UBERON:0001577 ! facial muscle +intersection_of: attaches_to UBERON:0001684 ! mandible +intersection_of: attaches_to UBERON:0002097 ! skin of body +intersection_of: attaches_to UBERON:0002397 ! maxilla +intersection_of: attaches_to UBERON:0011386 ! facial modiolus +intersection_of: surrounds UBERON:0000166 ! oral opening +disjoint_from: UBERON:0013497 ! muscularis orbicularis +relationship: attaches_to UBERON:0001684 ! mandible +relationship: attaches_to UBERON:0002097 ! skin of body +relationship: attaches_to UBERON:0002397 ! maxilla +relationship: attaches_to UBERON:0011386 ! facial modiolus +relationship: has_muscle_insertion UBERON:0001458 {notes="Skin around the lips", source="dbpedia"} ! skin of lip +relationship: has_muscle_origin UBERON:0001684 {notes="Maxilla and mandible", source="dbpedia"} ! mandible +relationship: has_muscle_origin UBERON:0002397 {notes="Maxilla and mandible", source="dbpedia"} ! maxilla +relationship: surrounds UBERON:0000166 ! oral opening + +[Term] +id: UBERON:0010935 +name: tensor tympani pre-muscle condensation +xref: EHDAA2:0002002 +is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation +is_a: UBERON:0009506 ! mesenchyme of middle ear + +[Term] +id: UBERON:0010936 +name: thyropharyngeus muscle +comment: muscle belly +synonym: "musculus thyropharyngeus" EXACT LATIN [FMA:46658, FMA:TA] +synonym: "pars thyropharyngea (musculus constrictor pharyngis inferior)" EXACT [FMA:46658] +synonym: "pars thyropharyngea musculus constrictoris pharyngis inferioris" EXACT LATIN [FMA:TA] +synonym: "thyropharyngeal part of inferior constrictor pharyngeus" EXACT [FMA:46658] +synonym: "thyropharyngeal part of inferior constrictor pharyngeus muscle" EXACT [] +synonym: "thyropharyngeal part of inferior pharyngeal constrictor" EXACT [FMA:46658] +synonym: "thyropharyngeus" EXACT [FMA:46658] +xref: FMA:46658 +xref: http://www.snomedbrowser.com/Codes/Details/244805001 +is_a: UBERON:0000933 ! pharyngeal muscle +is_a: UBERON:0003831 ! respiratory system muscle +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010938 ! muscle belly +relationship: has_muscle_origin UBERON:0001738 {source="dbpedia"} ! thyroid cartilage +relationship: part_of UBERON:0001570 {source="FMA"} ! inferior pharyngeal constrictor + +[Term] +id: UBERON:0010937 +name: salpingopharyngeus muscle +def: "The salpingopharyngeus muscle arises from the inferior part of the cartilage of the pharyngotympanic tube (Eustachian tube) in the nasal cavity; it passes downward and blends with the posterior fasciculus of the palatopharyngeus muscle. The salpingopharyngeus is known to raise the pharynx and larynx during deglutition (swallowing) and laterally draws the pharyngeal walls up. In addition, it opens the pharyngeal orifice of the pharyngotympanic tube during swallowing. This allows for the equalization of pressure between the auditory canal and the pharynx. The salpingopharyngeus is innervated by the vagus nerve (CN X) via the pharyngeal plexus." [http://en.wikipedia.org/wiki/Salpingopharyngeus_muscle] +synonym: "musculus salpingopharyngeus" RELATED LATIN [http://en.wikipedia.org/wiki/Salpingopharyngeus_muscle] +synonym: "salpingopharyngeus" EXACT [http://en.wikipedia.org/wiki/Salpingopharyngeus_muscle] +xref: FMA:46665 +xref: http://linkedlifedata.com/resource/umls/id/C1521985 +xref: http://www.snomedbrowser.com/Codes/Details/244807009 +xref: NCIT:C33510 +xref: Salpingopharyngeus:muscle +xref: UMLS:C1521985 {source="ncithesaurus:Salpingopharyngeus"} +is_a: UBERON:0000933 {source="FMA"} ! pharyngeal muscle +is_a: UBERON:0003831 ! respiratory system muscle +is_a: UBERON:0013765 ! digestive system element +is_a: UBERON:0015212 ! lateral structure +relationship: has_muscle_insertion UBERON:0001738 {notes="fibers pass downward and blend with the palatopharyngeus muscle to the upper border thyroid cartilage blending with constrictor fibers", source="dbpedia"} ! thyroid cartilage +relationship: has_muscle_insertion UBERON:0010234 {notes="fibers pass downward and blend with the palatopharyngeus muscle to the upper border thyroid cartilage blending with constrictor fibers", source="dbpedia"} ! palatopharyngeus muscle +relationship: has_muscle_origin UBERON:0007354 {notes="lower part of the cartilage of the auditory tube", source="dbpedia"} ! cartilage of pharyngotympanic tube +relationship: in_lateral_side_of UBERON:0001042 {source="FMA-abduced-lr"} ! chordate pharynx +relationship: innervated_by UBERON:0001759 {notes="vagus nerve and cranial accessory nerve", source="dbpedia"} ! vagus nerve +relationship: innervated_by UBERON:0002019 {notes="vagus nerve and cranial accessory nerve", source="dbpedia"} ! accessory XI nerve +relationship: part_of UBERON:0001042 ! chordate pharynx + +[Term] +id: UBERON:0010938 +name: muscle belly +synonym: "belly" BROAD [FMA:9719] +synonym: "belly of muscle" EXACT [] +synonym: "venter" BROAD LATIN [FMA:TA] +xref: FMA:9719 +xref: STID:29823001 +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0001630 {source="FMA"} ! muscle organ + +[Term] +id: UBERON:0010939 +name: zygomaticomandibularis muscle +synonym: "masseter, deep" RELATED [FEED:FEED] +synonym: "zygomaticomandibularis" EXACT [FEED:FEED] +synonym: "zygomaticomandibularis muscle" EXACT [] +is_a: UBERON:0001630 ! muscle organ +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001597 ! masseter muscle + +[Term] +id: UBERON:0010940 +name: muscle of digastric group +def: "Either of the two muscles that comprise the digastric group (anterior or posterior)." [http://orcid.org/0000-0002-6601-2165] +synonym: "belly of digastric" NARROW [FMA:46297] +synonym: "belly of digastric muscle" RELATED [FMA:46297] +synonym: "digastric" RELATED [FMA:46291] +synonym: "digastric belly" NARROW [FMA:46297] +synonym: "digastric muscle" RELATED [http://en.wikipedia.org/wiki/Digastric_muscle] +synonym: "digastricus" RELATED [http://en.wikipedia.org/wiki/Digastric_muscle] +synonym: "muscle body proper of digastric" RELATED [FMA:46297] +synonym: "musculus digastricus" RELATED LATIN [http://en.wikipedia.org/wiki/Digastric_muscle] +xref: FMA:46297 +xref: http://www.snomedbrowser.com/Codes/Details/360772008 +is_a: UBERON:0000933 ! pharyngeal muscle +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0014892 ! skeletal muscle organ +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0001562 ! digastric muscle group +relationship: part_of UBERON:0001562 ! digastric muscle group + +[Term] +id: UBERON:0010943 +name: anterior digastric muscle +def: "The anterior digastric is a pharyngeal arch I muscle that participates in oral/pharygeal behaviors and is innervated by the nerve to mylohyoid (a branch of the third division of the trigeminal nerve), is attached to the mandible and to the hyoid apparatus, and it is superficial to mylohyoid muscle." [http://www.feedexp.org/, MFMO:0000073] +subset: feed_aligned +synonym: "anterior belly of digastric" EXACT [FMA:46302] +synonym: "anterior belly of digastric muscle" EXACT [] +synonym: "anterior digastric" EXACT [] +synonym: "anterior digastric muscle" EXACT [] +synonym: "digastric, anterior" EXACT [FEED:FEED] +synonym: "digastricus anterior" EXACT [] +synonym: "digastricus anterior belly" EXACT [] +synonym: "digastricus, venter rostralis" EXACT [] +synonym: "venter anterior (musculus digastricus)" EXACT [FMA:46302] +synonym: "venter posterior musculus digastrici anterior" EXACT LATIN [FMA:46302, FMA:TA] +xref: EMAPA:37405 {source="MA:th"} +xref: FMA:46302 +xref: http://www.snomedbrowser.com/Codes/Details/141804004 +is_a: UBERON:0010940 ! muscle of digastric group +is_a: UBERON:0018544 ! trigeminal nerve muscle +intersection_of: UBERON:0018544 ! trigeminal nerve muscle +intersection_of: attaches_to UBERON:0001684 ! mandible +intersection_of: attaches_to UBERON:0001685 ! hyoid bone +intersection_of: superficial_to UBERON:0001564 ! mylohyoid muscle +disjoint_from: UBERON:0010944 {source="lexical"} ! posterior digastric muscle +relationship: attaches_to UBERON:0001684 ! mandible +relationship: attaches_to UBERON:0001685 ! hyoid bone +relationship: has_muscle_origin UBERON:0001684 ! mandible +relationship: innervated_by UBERON:0011322 {notes="mandibular division (V3) of the trigeminal (CN V) via the mylohyoid nerve", source="Wikipedia"} ! mylohyoid nerve +relationship: superficial_to UBERON:0001564 ! mylohyoid muscle + +[Term] +id: UBERON:0010944 +name: posterior digastric muscle +def: "The posterior digastric is a pharyngeal arch II muscle that participates in oral pharyngeal behavior, is innervated by the digastric branch of facial nerve and attaches to the posterior cranial base and the hyoid apparatus. It is found superficial to the mylohyoid muscle." [MFMO:0000060] +synonym: "digastric, posterior" EXACT [FEED:FEED] +synonym: "digastricus posterior" EXACT [] +synonym: "digastricus posterior belly" EXACT [] +synonym: "digastricus, venter caudalis" EXACT [] +synonym: "m. digastricus posterior" EXACT [] +synonym: "posterior belly of digastric" EXACT [FMA:46303] +synonym: "posterior belly of digastric muscle" EXACT [] +synonym: "posterior digastric" RELATED [] +synonym: "posterior digastric muscle" EXACT [] +synonym: "venter posterior musculus digastrici" EXACT LATIN [FMA:46303, FMA:TA] +xref: EMAPA:37406 {source="MA:th"} +xref: FMA:46303 +xref: http://www.snomedbrowser.com/Codes/Details/141905002 +xref: MFMO:0000060 +is_a: UBERON:0001577 ! facial muscle +is_a: UBERON:0010940 ! muscle of digastric group +relationship: has_muscle_origin UBERON:0001678 ! temporal bone +relationship: innervated_by UBERON:0011315 {notes="digastric branch", source="FEED", source="Wikipedia"} ! digastric branch of facial nerve + +[Term] +id: UBERON:0010945 +name: jugulohyoideus muscle +def: "runs from the processus jugularis to the os stylohyoideum; innervated with the ramus jugulohyoideus from the nervus facialis" [http://www.ncbi.nlm.nih.gov/pubmed/7839797] +comment: See also: stylohyoid muscle +synonym: "jugulohyoid" RELATED [] +synonym: "jugulohyoideus" RELATED [] +synonym: "musculus jugulohyoideus" RELATED [] +synonym: "musculus occipitohyoideus" RELATED [] +synonym: "occipitohyoid" RELATED [] +synonym: "occipitohyoideus" RELATED [] +is_a: UBERON:0002377 ! muscle of neck + +[Term] +id: UBERON:0010946 +name: occipitofrontalis muscle +def: "The occipitofrontalis or epicranius is a muscle which covers parts of the skull. It consists of two parts or bellies: The occipital belly, near the occipital bone, and the frontal belly, near the frontal bone." [http://en.wikipedia.org/wiki/Occipitofrontalis_muscle] +synonym: "epicranius" RELATED [http://en.wikipedia.org/wiki/Occipitofrontalis_muscle] +synonym: "musculus occipitofrontalis" RELATED LATIN [http://en.wikipedia.org/wiki/Occipitofrontalis_muscle] +synonym: "occipito-frontalis" RELATED [] +synonym: "occipitofrontalis" RELATED [http://en.wikipedia.org/wiki/Occipitofrontalis_muscle] +xref: FMA:9624 +xref: http://linkedlifedata.com/resource/umls/id/C1518531 +xref: http://www.snomedbrowser.com/Codes/Details/361811007 +xref: NCIT:C33198 +xref: Occipitofrontalis:muscle +xref: UMLS:C1518531 {source="ncithesaurus:Occipito-frontalis_Muscle"} +is_a: UBERON:0001630 ! muscle organ +relationship: has_muscle_insertion UBERON:0006661 {source="dbpedia"} ! epicranial aponeurosis +relationship: innervated_by UBERON:0001647 {source="dbpedia"} ! facial nerve +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0010947 +name: occipitalis +def: "A belly of the occipitofrontalis muscle that is near the occipital bone" [http://en.wikipedia.org/wiki/Occipitofrontalis_muscle] +synonym: "occipital belly of occipitofrontalis" EXACT [FMA:46758] +synonym: "occipital part of occipitofrontalis" EXACT [FMA:46758] +synonym: "venter occipitalis (musculus occipitofrontalis)" EXACT [FMA:46758] +synonym: "venter transversa musculi occipitofrontalis occipitalis" EXACT LATIN [FMA:46758, FMA:TA] +synonym: "venter transversa musculus occipitofrontalis occipitalis" EXACT LATIN [FMA:TA] +xref: FMA:46758 +xref: http://www.snomedbrowser.com/Codes/Details/21405000 +xref: Occipitalis:muscle +is_a: UBERON:0010938 ! muscle belly +relationship: part_of UBERON:0010946 {source="FMA"} ! occipitofrontalis muscle + +[Term] +id: UBERON:0010948 +name: cleidooccipital muscle +def: "A muscle organ that attaches_to a clavicle and attaches_to a occipital bone." [OBOL:automatic] +comment: Some studies have indicated a supernumerary cleido-occipital muscle more or less separate from the sterno-cleido-mastoid muscle; The frequency of cleido-occipital muscle occurrence has been reported up to 33% +synonym: "cleido-occipitalis" EXACT [] +synonym: "cleido-occipitalis muscle" EXACT [] +synonym: "cleidooccipital" EXACT [MA:0002276] +xref: EMAPA:37688 {source="MA:th"} +xref: MA:0002276 +xref: NCIT:C52895 +is_a: UBERON:0000933 ! pharyngeal muscle +is_a: UBERON:0014892 ! skeletal muscle organ +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: attaches_to UBERON:0001105 ! clavicle bone +intersection_of: attaches_to UBERON:0001676 ! occipital bone +relationship: attaches_to UBERON:0001105 ! clavicle bone +relationship: attaches_to UBERON:0001676 ! occipital bone + +[Term] +id: UBERON:0010949 +name: sternooccipital muscle +def: "A muscle organ that has_muscle_insertion a occipital bone and has_muscle_origin a sternum." [OBOL:automatic] +synonym: "sternooccipital" EXACT [MA:0002385] +xref: EMAPA:37702 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1710196 +xref: MA:0002385 +xref: NCIT:C53069 +xref: UMLS:C1710196 {source="ncithesaurus:Sternooccipital"} +is_a: UBERON:0002377 ! muscle of neck +is_a: UBERON:0003897 ! axial muscle +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: has_muscle_insertion UBERON:0001676 ! occipital bone +intersection_of: has_muscle_origin UBERON:0000975 ! sternum +relationship: has_muscle_insertion UBERON:0001676 ! occipital bone +relationship: has_muscle_origin UBERON:0000975 ! sternum + +[Term] +id: UBERON:0010950 +name: styloauricular muscle +def: "An occasional small muscle extending from the root of the styloid process to the cartilage of the meatus of the ear" [http://www.mondofacto.com/facts/dictionary?musculus+styloauricularis] +synonym: "mandibulo-auricularis" EXACT [] +synonym: "mandibulo-auricularis muscle" EXACT [] +synonym: "stylo-auricularis" EXACT [] +synonym: "stylo-auricularis muscle" EXACT [] +synonym: "styloauricularis" EXACT [] +is_a: UBERON:0002376 ! cranial muscle + +[Term] +id: UBERON:0010951 +name: interscutular muscle +def: "A muscle that attaches to the base of the ear and to the middle of the skull" [http://www.ncbi.nlm.nih.gov/pubmed/19209956] +synonym: "interscutularis" EXACT [] +synonym: "musculus interscutularis" EXACT [] +is_a: UBERON:0002376 ! cranial muscle + +[Term] +id: UBERON:0010952 +name: frontalis muscle belly +def: "A belly of the occipitofrontalis muscle that is near the frontal bone" [http://en.wikipedia.org/wiki/Occipitofrontalis_muscle] +subset: pheno_slim +synonym: "frontal belly of occipitofrontalis" EXACT [FMA:46757] +synonym: "frontal belly of occipitofrontalis muscle" RELATED [http://en.wikipedia.org/wiki/Frontalis_muscle] +synonym: "frontal part of occipitofrontalis" EXACT [FMA:46757] +synonym: "frontalis" EXACT [FMA:46757] +synonym: "frontalis muscke" EXACT [http://en.wikipedia.org/wiki/Frontalis_muscle] +synonym: "orbito-temporo-auricularis" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/18657257] +synonym: "venter frontalis (musculus occipitofrontalis)" EXACT [FMA:46757] +synonym: "venter frontalis musculi occipitofrontalis" RELATED LATIN [http://en.wikipedia.org/wiki/Frontalis_muscle] +synonym: "venter frontalis musculus occipitofrontalis" EXACT LATIN [FMA:TA] +xref: FMA:46757 +xref: Frontalis:muscle +xref: http://www.snomedbrowser.com/Codes/Details/368680005 +is_a: UBERON:0010938 ! muscle belly +relationship: part_of UBERON:0010946 {source="FMA"} ! occipitofrontalis muscle + +[Term] +id: UBERON:0010953 +name: nasalis muscle +def: "The nasalis (compressor naris) is a sphincter-like muscle of the nose whose function is to compress the nasal cartilage. It consists of two parts, transverse and alar: The transverse part arises from the maxilla, above and lateral to the incisive fossa; its fibers proceed upward and medially, expanding into a thin aponeurosis which is continuous on the bridge of the nose with that of the muscle of the opposite side, and with the aponeurosis of the Procerus. The alar part is attached at one end to the greater alar cartilage, and at the other to the integument at the point of the nose. Other sources divide it into 'Compressor nasalis' and 'Dilator nasalis'." [http://en.wikipedia.org/wiki/Nasalis_muscle] +synonym: "compressor naris" RELATED [http://en.wikipedia.org/wiki/Nasalis_muscle] +synonym: "compressor narium minor" RELATED [http://en.wikipedia.org/wiki/Nasalis_muscle] +synonym: "compressor nasi" RELATED [http://en.wikipedia.org/wiki/Nasalis_muscle] +synonym: "musculus nasalis" RELATED LATIN [http://en.wikipedia.org/wiki/Nasalis_muscle] +synonym: "nasalis" EXACT [FMA:46770] +xref: FMA:46770 +xref: http://www.snomedbrowser.com/Codes/Details/244732001 +xref: Nasalis:muscle +is_a: UBERON:0008522 {source="FMA"} ! nasal muscle +is_a: UBERON:0015212 ! lateral structure +relationship: has_muscle_insertion UBERON:0001681 {source="dbpedia"} ! nasal bone +relationship: has_muscle_origin UBERON:0002397 {source="dbpedia"} ! maxilla +relationship: in_lateral_side_of UBERON:0000004 {source="FMA-abduced-lr"} ! nose + +[Term] +id: UBERON:0010954 +name: ceratohyoideus muscle +def: "The ceratohyoideus is a muscle of Pharyngeal Arch III that participates in oral/pharyngeal behaviors and is innervated by the glossopharyngeal n. , and attaches to the ceratohyal part of the hyoid apparatus and also to a non-ceratohyal part of the hyoid apparatus.[FEED]" [http://www.feedexp.org] +synonym: "ceratohyoideus" EXACT [FEED:FEED] +xref: MFMO:0000006 +is_a: UBERON:0000933 ! pharyngeal muscle +relationship: innervated_by UBERON:0001649 ! glossopharyngeal nerve + +[Term] +id: UBERON:0010955 +name: trapezius pre-muscle mass +xref: EHDAA2:0002079 +is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation +is_a: UBERON:0006904 ! head mesenchyme from mesoderm +is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest +relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle + +[Term] +id: UBERON:0010956 +name: pterygopharyngeal part of superior pharyngeal constrictor +synonym: "pars pterygopharyngea (musculus constrictor pharyngis superior)" EXACT [FMA:46638] +synonym: "pars pterygopharyngea musculus constrictoris pharyngis superioris" EXACT LATIN [FMA:46638, FMA:TA] +synonym: "pterygopharyngeal part of superior constrictor pharyngeus" EXACT [FMA:46638] +synonym: "pterygopharyngeus" RELATED [] +xref: FMA:46638 +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0006329 {source="FMA"} ! superior pharyngeal constrictor + +[Term] +id: UBERON:0010958 +name: arytenoid muscle +def: "A single muscle, filling up the posterior concave surfaces of the arytenoid cartilages. It arises from the posterior surface and lateral border of one arytenoid cartilage, and is inserted into the corresponding parts of the opposite cartilage. It consists of oblique and transverse parts." [http://en.wikipedia.org/wiki/Arytenoid_muscle] +synonym: "aryepiglotticus muscle" RELATED [http://en.wikipedia.org/wiki/Arytenoid_muscle] +synonym: "arytaenoideus" RELATED LATIN [http://en.wikipedia.org/wiki/Arytenoid_muscle] +synonym: "arytaenoideus" RELATED [http://en.wikipedia.org/wiki/Arytenoid_muscle] +synonym: "arytaenoideus muscle" RELATED [http://en.wikipedia.org/wiki/Arytenoid_muscle] +xref: Arytenoid:muscle +xref: http://linkedlifedata.com/resource/umls/id/C1510945 +xref: NCIT:C32149 +xref: UMLS:C1510945 {source="ncithesaurus:Arytenoid_Muscle"} +is_a: UBERON:0006328 ! laryngeal intrinsic muscle +relationship: has_muscle_insertion UBERON:0001740 {notes="Arytenoid cartilage on opposite side", source="dbpedia"} ! arytenoid cartilage +relationship: has_muscle_origin UBERON:0001740 {notes="Arytenoid cartilage on one side", source="dbpedia"} ! arytenoid cartilage +relationship: innervated_by UBERON:0003716 {notes="recurrent laryngeal branch of the vagus", source="dbpedia"} ! recurrent laryngeal nerve + +[Term] +id: UBERON:0010959 +name: craniocervical muscle +def: "Any muscle organ that is part of either the head or the neck." [http://orcid.org/0000-0002-6601-2165] +synonym: "muscle of head and neck" RELATED [] +synonym: "muscle of head or neck" EXACT [] +xref: http://linkedlifedata.com/resource/umls/id/C0448281 +xref: NCIT:C32716 +xref: UMLS:C0448281 {source="ncithesaurus:Head_and_Neck_Muscle"} +is_a: UBERON:0014892 ! skeletal muscle organ +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0007811 ! craniocervical region +relationship: part_of UBERON:0008229 {source="prolog"} ! craniocervical region musculature + +[Term] +id: UBERON:0010961 +name: erector spinae pre-muscle mass +xref: EHDAA2:0000455 +is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation +relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group +relationship: part_of UBERON:0003897 {source="EHDAA2"} ! axial muscle + +[Term] +id: UBERON:0010962 +name: extensor pre-muscle mass +xref: EHDAA2:0000459 +is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation +relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group + +[Term] +id: UBERON:0010963 +name: trunk and cervical myotome group +comment: isa row in EHDAA2 +xref: EHDAA2:0003425 +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:0005256 {source="EHDAA2"} ! trunk mesenchyme + +[Term] +id: UBERON:0010970 +name: intercostal pre-muscle mass +xref: EHDAA2:0000843 +is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation +relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group +relationship: located_in UBERON:0012198 {source="cjm"} ! intercostal space +relationship: part_of UBERON:0003897 {source="EHDAA2"} ! axial muscle + +[Term] +id: UBERON:0010974 +name: external intercostal pre-muscle mass +xref: EHDAA2:0000467 +is_a: UBERON:0010970 {source="EHDAA2"} ! intercostal pre-muscle mass + +[Term] +id: UBERON:0010975 +name: external oblique pre-muscle mass +xref: EHDAA2:0000470 +is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation +relationship: develops_from UBERON:0006210 {source="EHDAA2"} ! body-wall mesenchyme +relationship: part_of UBERON:0002461 {source="EHDAA2"} ! anterior abdominal wall muscle + +[Term] +id: UBERON:0010977 +name: flexor pre-muscle mass +xref: EHDAA2:0000543 +is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation +relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group + +[Term] +id: UBERON:0010981 +name: internal intercostal pre-muscle mass +xref: EHDAA2:0000876 +is_a: UBERON:0010970 {source="EHDAA2"} ! intercostal pre-muscle mass + +[Term] +id: UBERON:0010982 +name: latissimus dorsi pre-muscle mass +xref: EHDAA2:0000933 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation +relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group +relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle + +[Term] +id: UBERON:0010983 +name: levator scapulae pre-muscle mass +xref: EHDAA2:0000993 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation +relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group +relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle + +[Term] +id: UBERON:0010984 +name: pectoral pre-muscle mass +xref: EHDAA2:0001423 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation +relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group +relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle + +[Term] +id: UBERON:0010985 +name: rhomboid pre-muscle mass +xref: EHDAA2:0001636 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation +relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group +relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle + +[Term] +id: UBERON:0010986 +name: serratus ventralis pre-muscle mass +synonym: "serratus anterior pre-muscle mass" EXACT [EHDAA2:0001833] +xref: EHDAA2:0001833 +xref: EHDAA:5992 +is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation +relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group +relationship: part_of UBERON:0003897 {source="EHDAA2"} ! axial muscle + +[Term] +id: UBERON:0010987 +name: sterno-mastoid pre-muscle mass +xref: EHDAA2:0001913 +is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation +is_a: UBERON:0006904 ! head mesenchyme from mesoderm +relationship: part_of UBERON:0002376 {source="EHDAA2"} ! cranial muscle + +[Term] +id: UBERON:0010988 +name: teres major pre-muscle mass +xref: EHDAA2:0002005 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation +relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group +relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle + +[Term] +id: UBERON:0010989 +name: transverospinalis pre-muscle mass +def: "A pre-muscle condensation that will develop into a transverospinalis muscle." [http://orcid.org/0000-0002-6601-2165] +xref: EHDAA2:0002076 +is_a: UBERON:0005865 ! pre-muscle condensation +intersection_of: UBERON:0005865 ! pre-muscle condensation +intersection_of: has_potential_to_develop_into UBERON:0010990 ! transversospinales muscle +relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group +relationship: has_potential_to_develop_into UBERON:0010990 ! transversospinales muscle + +[Term] +id: UBERON:0010990 +name: transversospinales muscle +def: "The transversospinal muscles are a group of muscles of the human back. Their combined action is rotation and extension of the vertebral column. They include: semispinalis, spanning 4-6 vertebral segments semispinalis dorsi semispinalis cervicis semispinalis capitis multifidus, spanning 2-4 vertebral segments rotatores, spanning 1-2 vertebral segments rotatores cervicis rotatores thoracis rotatores lumborum" [http://en.wikipedia.org/wiki/Transversospinales_muscles] +synonym: "deep dorsal muscles" RELATED [http://en.wikipedia.org/wiki/Transversospinales_muscles] +synonym: "musculi transversospinales" RELATED [FMA:TA] +synonym: "musculi transversospinales" RELATED LATIN [http://en.wikipedia.org/wiki/Transversospinales_muscles] +synonym: "transverospinalis" EXACT [EHDAA2:0002075] +synonym: "transversospinal group of muscles" RELATED [http://en.wikipedia.org/wiki/Transversospinales_muscles] +synonym: "transversospinales" RELATED [FMA:71304] +synonym: "transversospinales muscle group" RELATED [FMA:71304] +xref: EHDAA2:0002075 +xref: EHDAA:9465 +xref: FMA:71304 +xref: http://www.snomedbrowser.com/Codes/Details/244866002 +xref: Transversospinales:muscles +is_a: UBERON:0003897 {source="EHDAA2"} ! axial muscle +relationship: develops_from UBERON:0010989 {source="EHDAA2"} ! transverospinalis pre-muscle mass + +[Term] +id: UBERON:0010993 +name: subscapularis pre-muscle mass +xref: EMAPA:17750 +is_a: UBERON:0005865 ! pre-muscle condensation +relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group + +[Term] +id: UBERON:0010994 +name: coronoid process of ulna +def: "A a triangular eminence projecting forward from the proximal epiphysis of the ulna[WP,modified]." [http://en.wikipedia.org/wiki/Coronoid_process_of_the_ulna] +synonym: "coronoid process" BROAD [FMA:23616] +synonym: "coronoid process of the ulna" EXACT [http://en.wikipedia.org/wiki/Coronoid_process_of_the_ulna] +synonym: "processus coronoideus" EXACT [FMA:23616] +synonym: "processus coronoideus ulnae" RELATED LATIN [http://en.wikipedia.org/wiki/Coronoid_process_of_the_ulna] +synonym: "ulnar coronoid process" EXACT [] +xref: FMA:23616 +xref: http://en.wikipedia.org/wiki/Coronoid_process_of_the_ulna +xref: http://www.snomedbrowser.com/Codes/Details/181951002 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0006822 {source="FMA"} ! proximal epiphysis of ulna + +[Term] +id: UBERON:0010995 +name: deep part of masseter muscle +synonym: "deep layer of masseter" EXACT [FMA:49003] +synonym: "deep part of masseter" EXACT [FMA:49003] +synonym: "masseter, deep" EXACT [] +synonym: "masseter, profundus" EXACT [FEED:FEED] +synonym: "pars profunda (musculus masseter)" EXACT [FMA:49003] +synonym: "pars profunda musculus masseterica" EXACT LATIN [FMA:49003, FMA:TA] +synonym: "pars profunda of masseter muscle" EXACT [] +xref: FMA:49003 +xref: http://www.snomedbrowser.com/Codes/Details/142309002 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: in_deep_part_of UBERON:0001597 ! masseter muscle +relationship: part_of UBERON:0001597 ! masseter muscle + +[Term] +id: UBERON:0010996 +name: articular cartilage of joint +def: "A thin layer of cartilage, usually hyaline, on the articular surface of bones in synovial joints." [BTO:0001572] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +subset: vertebrate_core +synonym: "articular cartilage" EXACT [MA:0000487] +synonym: "cartilago articularis" EXACT [FMA:12264] +synonym: "hyaline cartilage" RELATED [BTO:0001572] +synonym: "joint-associated cartilage" RELATED [AEO:0000179] +xref: AEO:0000179 +xref: BTO:0001572 +xref: CALOHA:TS-0055 +xref: EFO:0001902 +xref: EMAPA:35149 +xref: FMA:12264 +xref: GAID:101 +xref: galen:ArticularCartilage +xref: http://linkedlifedata.com/resource/umls/id/C0007303 +xref: http://www.snomedbrowser.com/Codes/Details/305026006 +xref: MA:0000487 +xref: MESH:A02.165.165 +xref: NCIT:C32144 +xref: UMLS:C0007303 {source="ncithesaurus:Articular_Cartilage"} +is_a: UBERON:0001994 {source="MA"} ! hyaline cartilage tissue +disjoint_from: UBERON:0011002 ! articular cartilage element +relationship: part_of UBERON:0002217 {source="Wikipedia"} ! synovial joint + +[Term] +id: UBERON:0011002 +name: articular cartilage element +def: "Cartilage of the lower jaw that give rise to a portion of the anguloarticular compound bone." [ZFA:0001644] +synonym: "articular cartilages" BROAD PLURAL [ZFA:0001644] +xref: TAO:0001670 +xref: ZFA:0001644 +is_a: UBERON:0011004 {source="ZFA"} ! pharyngeal arch cartilage + +[Term] +id: UBERON:0011004 +name: pharyngeal arch cartilage +def: "A cartilage element that is part of a splanchnocranium." [OBOL:automatic] +subset: efo_slim +synonym: "pharyngeal arch cartilages" EXACT PLURAL [ZFA:0001460] +synonym: "splanchnocranium cartilage" EXACT [ZFA:0001460] +xref: EFO:0003689 +xref: TAO:0001460 +xref: ZFA:0001460 +is_a: UBERON:0003933 {source="ZFA"} ! cranial cartilage +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0008895 ! splanchnocranium +relationship: develops_from UBERON:0002539 ! pharyngeal arch +relationship: part_of UBERON:0008895 {source="ZFA"} ! splanchnocranium + +[Term] +id: UBERON:0011005 +name: endocardium of auricle +def: "An endocardium that is part of a atrium auricular region." [OBOL:automatic] +synonym: "auricle endocardium" EXACT [FMA:13234] +xref: FMA:13234 +is_a: UBERON:0002166 ! endocardium of atrium +intersection_of: UBERON:0002165 ! endocardium +intersection_of: part_of UBERON:0006618 ! atrium auricular region +relationship: part_of UBERON:0006618 ! atrium auricular region + +[Term] +id: UBERON:0011006 +name: endocardium of left auricle +def: "An endocardium that is part of a left atrium auricular region." [OBOL:automatic] +synonym: "left atrium auricular region endocardium" EXACT [EHDAA2:0000277] +synonym: "left auricle endocardial tissue" RELATED [VHOG:0001231] +synonym: "left auricle endocardium" EXACT [FMA:13236] +xref: EHDAA2:0000277 +xref: FMA:13236 +xref: VHOG:0001231 +is_a: UBERON:0011005 ! endocardium of auricle +is_a: UBERON:0034903 ! left atrium endocardium +intersection_of: UBERON:0002165 ! endocardium +intersection_of: part_of UBERON:0006630 ! left atrium auricular region +relationship: part_of UBERON:0006630 ! left atrium auricular region + +[Term] +id: UBERON:0011007 +name: endocardium of right auricle +def: "An endocardium that is part of a right atrium auricular region." [OBOL:automatic] +synonym: "right auricle endocardium" EXACT [FMA:13235] +xref: EHDAA2:0000292 +xref: FMA:13235 +is_a: UBERON:0009129 ! right atrium endocardium +is_a: UBERON:0011005 ! endocardium of auricle +intersection_of: UBERON:0002165 ! endocardium +intersection_of: part_of UBERON:0006631 ! right atrium auricular region +relationship: part_of UBERON:0006631 ! right atrium auricular region + +[Term] +id: UBERON:0011011 +name: brachioradialis +def: "Brachioradialis is a muscle of the forearm that acts to flex the forearm at the elbow. It is also capable of both pronation and supination, depending on the position of the forearm. It is attached to the distal styloid process of the radius by way of the brachioradialis tendon, and to the lateral supracondylar ridge of the humerus." [http://en.wikipedia.org/wiki/Brachioradialis] +synonym: "brachioradialis muscle" EXACT [http://en.wikipedia.org/wiki/Brachioradialis] +synonym: "musculus brachioradialis" RELATED LATIN [http://en.wikipedia.org/wiki/Brachioradialis] +xref: FMA:38485 +xref: http://en.wikipedia.org/wiki/Brachioradialis +xref: http://www.snomedbrowser.com/Codes/Details/244989009 +is_a: UBERON:0001482 ! muscle of shoulder +is_a: UBERON:0001499 ! muscle of arm +relationship: has_muscle_insertion UBERON:0001423 {notes="Distal radius", source="dbpedia"} ! radius bone +relationship: has_muscle_origin UBERON:0000976 {notes="Lateral supracondylar ridge of the humerus", source="dbpedia"} ! humerus +relationship: innervated_by UBERON:0001492 {source="dbpedia"} ! radial nerve + +[Term] +id: UBERON:0011012 +name: flexor pollicis brevis muscle +def: "The flexor pollicis brevis is a muscle in the hand that flexes the thumb. It is one of three thenar muscles. It has both a superficial part and a deep part." [http://en.wikipedia.org/wiki/Flexor_pollicis_brevis_muscle] +synonym: "flexor pollicis brevis" EXACT [FMA:37378] +synonym: "musculus flexor pollicis brevis" RELATED LATIN [http://en.wikipedia.org/wiki/Flexor_pollicis_brevis_muscle] +xref: FMA:37378 +xref: http://en.wikipedia.org/wiki/Flexor_pollicis_brevis_muscle +xref: http://www.snomedbrowser.com/Codes/Details/181646006 +is_a: UBERON:0001500 ! muscle of manus +relationship: has_muscle_antagonist UBERON:0003234 {notes="Extensor pollicis longus and brevis", source="dbpedia"} ! extensor pollicis longus muscle +relationship: has_muscle_insertion UBERON:0001463 {source="dbpedia"} ! manual digit 1 +relationship: has_muscle_insertion UBERON:0004302 {source="dbpedia"} ! proximal phalanx + +[Term] +id: UBERON:0011013 +name: spinalis muscle +def: "The spinalis is the portion of the erector spinae, a bundle of muscles and tendons, located nearest to the spine. It is divided into three parts. [WP,unvetted]." [http://en.wikipedia.org/wiki/Spinalis] +synonym: "medial column of erector spinae" RELATED [] +synonym: "musculus spinalis" RELATED [http://en.wikipedia.org/wiki/Spinalis] +synonym: "musculus spinalis" RELATED LATIN [http://en.wikipedia.org/wiki/Spinalis] +synonym: "spinal muscle" EXACT [BTO:0002621] +synonym: "spinalis" EXACT [FMA:77179] +synonym: "spinalis muscle" RELATED [http://en.wikipedia.org/wiki/Spinalis] +xref: BTO:0002621 +xref: FMA:77179 +xref: http://en.wikipedia.org/wiki/Spinalis +xref: http://www.snomedbrowser.com/Codes/Details/244862000 +is_a: UBERON:0003897 ! axial muscle +is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column +relationship: has_muscle_insertion UBERON:0001076 {notes="spinous process Thoracis: SP of upper thoracic vertebrae. Cervicis: SP of cervical vertebrae except C1.", source="dbpedia"} ! neural spine +relationship: has_muscle_insertion UBERON:0001092 {notes="spinous process Thoracis: SP of upper thoracic vertebrae. Cervicis: SP of cervical vertebrae except C1.", source="dbpedia"} ! vertebral bone 1 +relationship: has_muscle_origin UBERON:0001076 {notes="spinous process Thoracis: Upper lumbar and lower thoracic vertebrae. Cervicis: Ligamentum nuchae and spinous process of C7.", source="dbpedia"} ! neural spine +relationship: has_muscle_origin UBERON:0004616 {notes="spinous process Thoracis: Upper lumbar and lower thoracic vertebrae. Cervicis: Ligamentum nuchae and spinous process of C7.", source="dbpedia"} ! mammalian cervical vertebra 7 +relationship: innervated_by UBERON:0006839 {source="dbpedia"} ! dorsal ramus of spinal nerve +relationship: part_of UBERON:0002462 {source="BTO"} ! erector spinae muscle group + +[Term] +id: UBERON:0011014 +name: spinalis capitis muscle +def: "Origin: spines of upper thoracic and lower cervical vertebrae; insertion: occipital bone; innervation: spinal nerves; action, extends head." [BTO:0002622] +synonym: "musculus spinalis capitis" RELATED [BTO:0002622] +synonym: "spinal muscle of head" EXACT [BTO:0002622] +synonym: "spinalis capitis" EXACT [FMA:22775] +xref: BTO:0002622 +xref: FMA:22775 +xref: http://www.snomedbrowser.com/Codes/Details/244865003 +is_a: UBERON:0011013 {source="FMA"} ! spinalis muscle +relationship: has_muscle_insertion UBERON:0003129 ! skull + +[Term] +id: UBERON:0011015 +name: iliac fossa +xref: FMA:75316 +xref: http://www.snomedbrowser.com/Codes/Details/182341009 +xref: NCIT:C103454 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0001273 ! ilium + +[Term] +id: UBERON:0011016 +name: pyramidalis +def: "The pyramidalis is a small and triangular muscle, anterior to the Rectus abdominis, and contained in the rectus sheath." [http://en.wikipedia.org/wiki/Pyramidalis_muscle] +synonym: "musculus pyramidalis" RELATED LATIN [http://en.wikipedia.org/wiki/Pyramidalis_muscle] +synonym: "pyramidalis" RELATED [http://en.wikipedia.org/wiki/Pyramidalis_muscle] +synonym: "pyramidalis muscle" EXACT [FMA:15568] +xref: FMA:15568 +xref: http://linkedlifedata.com/resource/umls/id/C0224374 +xref: http://www.snomedbrowser.com/Codes/Details/244950003 +xref: NCIT:C33438 +xref: Pyramidalis:muscle +xref: UMLS:C0224374 {source="ncithesaurus:Pyramidalis"} +is_a: UBERON:0002461 {source="FMA"} ! anterior abdominal wall muscle +relationship: has_muscle_origin UBERON:0003699 {notes="pubic symphysis and pubic crest", source="dbpedia"} ! pubic symphysis + +[Term] +id: UBERON:0011017 +name: semispinalis muscle +def: "A transversospinalis muscle of the human body." [http://en.wikipedia.org/wiki/Semispinalis_muscle] +synonym: "semispinalis" EXACT [http://en.wikipedia.org/wiki/Semispinalis_muscle] +xref: FMA:22823 +xref: http://www.snomedbrowser.com/Codes/Details/244867006 +xref: Semispinalis:muscle +is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column + +[Term] +id: UBERON:0011022 +name: flexor hallucis brevis muscle +def: "A muscle that originates from the cuboid bone and divides into two portions, which are inserted into the medial and lateral sides of the base of the first phalanx of the great toe, a sesamoid bone being present in each tendon at its insertion." [http://en.wikipedia.org/wiki/Flexor_hallucis_brevis_muscle] +synonym: "flexor digit I brevis" RELATED [EMAPA:36259] +synonym: "flexor hallucis brevis" EXACT [FMA:37449] +synonym: "flexor hallucis brevis muscle" EXACT [http://en.wikipedia.org/wiki/Flexor_hallucis_brevis_muscle] +synonym: "m.flexor hallucis brevis" EXACT [FMA:37449] +synonym: "musculus flexor hallucis brevis" RELATED LATIN [http://en.wikipedia.org/wiki/Flexor_hallucis_brevis_muscle] +xref: EMAPA:36259 +xref: FMA:37449 +xref: http://en.wikipedia.org/wiki/Flexor_hallucis_brevis_muscle +xref: http://www.snomedbrowser.com/Codes/Details/181730007 +is_a: UBERON:0000366 ! flexor muscle +is_a: UBERON:0014378 {source="FMA"} ! intrinsic muscle of pes +relationship: has_muscle_insertion UBERON:0001479 {notes="medial and lateral sesamoid bones of first metatarsal", source="dbpedia"} ! sesamoid bone +relationship: has_muscle_insertion UBERON:0003650 {notes="medial and lateral sesamoid bones of first metatarsal", source="dbpedia"} ! metatarsal bone of digit 1 +relationship: has_muscle_origin UBERON:0010721 {notes="plantar surface of cuneiform bones", source="dbpedia"} ! distal tarsal bone + +[Term] +id: UBERON:0011024 +name: extrinsic extensor muscle of manus +def: "The extrinsic extensor muscles of the hand are located in the back of the forearm and have long tendons connecting them to bones in the hand, where they exert their action." [http://en.wikipedia.org/wiki/Extrinsic_extensor_muscles_of_the_hand] +synonym: "extrinsic extensor muscle of hand" EXACT [http://en.wikipedia.org/wiki/Extrinsic_extensor_muscles_of_the_hand] +xref: http://en.wikipedia.org/wiki/Extrinsic_extensor_muscles_of_the_hand +is_a: UBERON:0000311 ! extensor muscle +is_a: UBERON:0004254 ! forelimb zeugopod muscle +intersection_of: UBERON:0000311 ! extensor muscle +intersection_of: has_muscle_insertion UBERON:0005897 ! manus bone +intersection_of: part_of UBERON:0002386 ! forelimb zeugopod +relationship: has_muscle_insertion UBERON:0005897 ! manus bone + +[Term] +id: UBERON:0011025 +name: aryepiglotticus muscle +def: "The aryepiglotticus is a muscle of the larynx running in the aryepiglottic fold from the arytenoid cartilage to the epiglottis." [http://en.wikipedia.org/wiki/Aryepiglottic_muscle] +synonym: "ary-epiglottic part of oblique arytenoid" EXACT [FMA:46602] +synonym: "aryepiglottic" EXACT [] +synonym: "aryepiglottic muscle" EXACT [FMA:46602] +synonym: "aryepiglotticus" EXACT [http://en.wikipedia.org/wiki/Aryepiglottic_muscle] +synonym: "aryepiglottus" EXACT [FEED:FEED] +synonym: "aryepiglottus muscle" EXACT [FEED:FEED] +synonym: "musculus aryepiglotticus" RELATED LATIN [http://en.wikipedia.org/wiki/Aryepiglottic_muscle] +synonym: "pars aryepiglottica (musculus arytenoideus obliquus)" EXACT [FMA:46602] +synonym: "pars aryepiglottica musculi arytenoidei obliqui" RELATED LATIN [http://en.wikipedia.org/wiki/Aryepiglottic_muscle] +synonym: "pars aryepiglottica musculus arytenoidei obliqui" EXACT LATIN [FMA:TA] +xref: Aryepiglottic:muscle +xref: FMA:46602 +xref: http://linkedlifedata.com/resource/umls/id/C0224177 +xref: http://www.snomedbrowser.com/Codes/Details/244818009 +xref: NCIT:C32146 +xref: UMLS:C0224177 {source="ncithesaurus:Aryepiglottic_Muscle"} +is_a: UBERON:0001568 {source="ncithesaurus"} ! muscle of larynx +relationship: has_muscle_insertion UBERON:0000388 ! epiglottis +relationship: has_muscle_origin UBERON:0001740 ! arytenoid cartilage +relationship: part_of UBERON:0008575 {source="FMA"} ! oblique arytenoid + +[Term] +id: UBERON:0011043 +name: obturator muscle +def: "One of: obturator externus or obturator internus" [http://en.wikipedia.org/wiki/Obturator_muscles] +synonym: "obturator" BROAD [] +xref: EMAPA:36235 +xref: FMA:19083 +xref: http://linkedlifedata.com/resource/umls/id/C0224421 +xref: http://www.snomedbrowser.com/Codes/Details/245024007 +xref: NCIT:C33193 +xref: Obturator:muscles +xref: UMLS:C0224421 {source="ncithesaurus:Obturator_Muscle"} +is_a: UBERON:0002000 {source="FMA"} ! gluteal muscle + +[Term] +id: UBERON:0011048 +name: obturator internus +def: "The obturator internus muscle originates on the medial surface of the obturator membrane, the ischium near the membrane, and the rim of the pubis. It exits the pelvic cavity through the lesser sciatic foramen. The obturator internus is situated partly within the lesser pelvis, and partly at the back of the hip-joint. It functions to help laterally rotate extended thigh and abduct flexed thigh, as well as to steady the femoral head in the acetabulum." [http://en.wikipedia.org/wiki/Obturator_internus_muscle] +synonym: "internal obturator" EXACT [FMA:22298] +synonym: "internus obturator" RELATED [http://en.wikipedia.org/wiki/Obturator_internus_muscle] +synonym: "musculus obturator internus" EXACT [FMA:22298] +synonym: "musculus obturatorius internus" RELATED LATIN [http://en.wikipedia.org/wiki/Obturator_internus_muscle] +synonym: "obturator internus muscle" RELATED [http://en.wikipedia.org/wiki/Obturator_internus_muscle] +synonym: "obturatorius internus" RELATED [http://en.wikipedia.org/wiki/Obturator_internus_muscle] +xref: AAO:0010052 +xref: EMAPA:36237 +xref: FMA:22298 +xref: http://en.wikipedia.org/wiki/Obturator_internus_muscle +xref: http://linkedlifedata.com/resource/umls/id/C1518529 +xref: http://www.snomedbrowser.com/Codes/Details/245025008 +xref: NCIT:C33192 +xref: UMLS:C1518529 {source="ncithesaurus:Obturator_Internus_Muscle"} +is_a: UBERON:0011043 {source="FMA"} ! obturator muscle +relationship: attaches_to UBERON:0002503 {source="FMA"} ! greater trochanter +relationship: has_muscle_insertion UBERON:0002503 {notes="medial aspect of the Greater trochanter", source="dbpedia"} ! greater trochanter + +[Term] +id: UBERON:0011049 +name: uterovesical pouch +def: "The peritoneum over the rectum and the bladder is continued over the intestinal surface and fundus of the uterus on to its vesical surface, which it covers as far as the junction of the body and cervix uteri, and then to the bladder, forming here a second, but shallower, pouch, the vesicouterine excavation (or uterovesical pouch). The vesicouterine excavation is close to the anterior fornix of the vagina." [http://en.wikipedia.org/wiki/Vesico-uterine_pouch] +synonym: "excavatio vesico-uterina" EXACT [FMA:14729] +synonym: "excavatio vesicouterina" EXACT LATIN [FMA:TA] +synonym: "excavatio vesicouterina" RELATED LATIN [http://en.wikipedia.org/wiki/Vesico-uterine_pouch] +synonym: "excavatio vesiocuterina" RELATED [http://en.wikipedia.org/wiki/Vesico-uterine_pouch] +synonym: "vesico-uterine pouch" EXACT [FMA:14729] +synonym: "vesicouterine" RELATED [http://en.wikipedia.org/wiki/Vesico-uterine_pouch] +synonym: "vesicouterine excavation" RELATED [http://en.wikipedia.org/wiki/Vesico-uterine_pouch] +synonym: "vesicouterine pouch" EXACT [FMA:14729] +synonym: "vesicouterine pouch" RELATED [http://en.wikipedia.org/wiki/Vesico-uterine_pouch] +xref: FMA:14729 +xref: http://linkedlifedata.com/resource/umls/id/C1519874 +xref: http://www.snomedbrowser.com/Codes/Details/249806003 +xref: NCIT:C33843 +xref: UMLS:C1519874 {source="ncithesaurus:Utero-Vesical_Pouch"} +xref: Vesico-uterine:pouch +is_a: UBERON:0034696 ! fold of peritoneum + +[Term] +id: UBERON:0011050 +name: thoracic vertebra 8 +def: "The eighth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:T8_Vertebra] +synonym: "eighth dorsal vertebra" EXACT [FMA:9991] +synonym: "eighth thoracic vertebra" EXACT [FMA:9991] +synonym: "T8 vertebra" EXACT [FMA:9991] +xref: EMAPA:19549 +xref: FMA:9991 +xref: http://linkedlifedata.com/resource/umls/id/C0459953 +xref: http://www.snomedbrowser.com/Codes/Details/181836007 +xref: MA:0001445 +xref: NCIT:C33730 +xref: UMLS:C0459953 {source="ncithesaurus:T8_Vertebra"} +is_a: UBERON:0002347 {source="MA"} ! thoracic vertebra +relationship: anteriorly_connected_to UBERON:0004632 {source="FMA"} ! thoracic vertebra 7 + +[Term] +id: UBERON:0011060 +name: perilymphatic channel +def: "A channel containing perilymph passing through the temporal bone, connecting the scala tympani of the cochlea to the subarachnoid space." [http://en.wikipedia.org/wiki/Perilymphatic_duct, MESH:A09.246.631.246.280] +synonym: "cochlear aqueduct" RELATED [FMA:77822, MESH:A09.246.631.246.280] +synonym: "ductus perilymphaticus" EXACT [AAO:0000136] +synonym: "perilymphatic duct" RELATED [MESH:A09.246.631.246.280] +synonym: "perilymphatic space" RELATED [MA:0000248] +xref: AAO:0000136 +xref: EMAPA:35677 +xref: FMA:77822 +xref: http://www.snomedbrowser.com/Codes/Details/368950002 +xref: MA:0000248 +xref: Perilymphatic:duct +xref: ZFA:0005461 +is_a: UBERON:0000025 ! tube +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001846 {source="MA"} ! internal ear +relationship: surrounds UBERON:0001845 ! perilymph + +[Term] +id: UBERON:0011078 +name: endolymphatic space +def: "endolymph-filled space contained by the membranous labyrinth." [http://medical-dictionary.thefreedictionary.com/endolymphatic+space] +xref: FMA:77823 +xref: http://www.snomedbrowser.com/Codes/Details/279856000 +is_a: UBERON:0002553 ! anatomical cavity +relationship: part_of UBERON:0001849 {source="Wikipedia"} ! membranous labyrinth +relationship: part_of UBERON:0002295 ! scala media + +[Term] +id: UBERON:0011079 +name: angular bone +def: "Dermal bone that is located posterior to the dentary and lateral to the articular and retroarticular bones of the lower jaw. The angular forms the outer dermal sheet of the posterior part of the lower jaw. The angular bears a portion of the mandibular sensory canal. The angular is a paired bone." [http://en.wikipedia.org/wiki/Angular_bone, TAO:0001669] +synonym: "angular" BROAD [AAO:0000010] +synonym: "angular bones" RELATED PLURAL [ZFA:0001645] +synonym: "postoperculare" RELATED [AAO:0000010] +synonym: "praearticulare" RELATED [AAO:0000010] +xref: AAO:0000010 +xref: Angular:bone +xref: TAO:0001669 +xref: ZFA:0001645 +is_a: UBERON:0004768 ! bone of lower jaw +is_a: UBERON:0008907 {source="TAO"} ! dermal bone +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0003278 {source="AAO"} ! skeleton of lower jaw +relationship: part_of UBERON:0003113 {notes="mandibular series", source="ISBN:0073040584"} ! dermatocranium + +[Term] +id: UBERON:0011085 +name: palatoquadrate arch +def: "The dorsal portion of the first pharyngeal arch, comprising the upper jaw[ZFIN,VHOG]." [https://github.com/obophenotype/uberon/issues/153, VHOG:0000511] +subset: efo_slim +synonym: "dorsal mandibular arch" RELATED [VHOG:0000511] +synonym: "dorsal pharyngeal arch 1" RELATED [VHOG:0000511] +synonym: "dorsal visceral arch 1" EXACT [ZFA:0001272] +synonym: "dorsal visceral arch 1" RELATED [VHOG:0000511] +synonym: "palatoquadrate arch" RELATED [VHOG:0000511] +synonym: "upper jaw" RELATED [VHOG:0000511] +synonym: "upper pharyngeal jaw" EXACT [ZFA:0001272] +synonym: "upper pharyngeal jaw" RELATED [VHOG:0000511] +xref: EFO:0003659 +xref: TAO:0001272 +xref: VHOG:0000511 +xref: ZFA:0001272 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010912 {source="cjm"} ! subdivision of skeleton +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +relationship: develops_from UBERON:0004362 ! pharyngeal arch 1 +relationship: part_of UBERON:0003277 ! skeleton of upper jaw +relationship: part_of UBERON:0008895 {source="VHOG"} ! splanchnocranium + +[Term] +id: UBERON:0011087 +name: pharyngeal arch 7 +synonym: "branchial arch 5" RELATED [ZFA:0001610] +synonym: "gill arch 5" EXACT [ZFA:0001610] +synonym: "visceral arch 7" EXACT [ZFA:0001610] +xref: TAO:0001602 +xref: ZFA:0001610 +is_a: UBERON:0008896 {source="ZFA"} ! post-hyoid pharyngeal arch + +[Term] +id: UBERON:0011088 +name: ligament of knee joint +def: "A ligament that is part of a knee joint." [OBOL:automatic] +synonym: "knee joint ligament" EXACT [FMA:44580] +xref: FMA:44580 +xref: http://www.snomedbrowser.com/Codes/Details/182440009 +is_a: UBERON:0008846 ! skeletal ligament +intersection_of: UBERON:0000211 ! ligament +intersection_of: part_of UBERON:0001485 ! knee joint +relationship: part_of UBERON:0001485 ! knee joint + +[Term] +id: UBERON:0011090 +name: skeleton of right pelvic girdle +def: "A skeleton of pelvic girdle that is part of a right pelvic girdle region." [OBOL:automatic] +xref: FMA:87593 +is_a: UBERON:0007832 ! pelvic girdle skeleton +intersection_of: UBERON:0007832 ! pelvic girdle skeleton +intersection_of: part_of UBERON:0011092 ! right pelvic girdle region +relationship: part_of UBERON:0011092 ! right pelvic girdle region + +[Term] +id: UBERON:0011091 +name: skeleton of left pelvic girdle +def: "A skeleton of pelvic girdle that is part of a left pelvic girdle region." [OBOL:automatic] +xref: FMA:87594 +is_a: UBERON:0007832 ! pelvic girdle skeleton +intersection_of: UBERON:0007832 ! pelvic girdle skeleton +intersection_of: part_of UBERON:0011093 ! left pelvic girdle region +relationship: part_of UBERON:0011093 ! left pelvic girdle region + +[Term] +id: UBERON:0011092 +name: right pelvic girdle region +def: "A pelvic girdle region that is in the right side of a multicellular organism." [OBOL:automatic] +synonym: "right pelvic girdle" EXACT INCONSISTENT [FMA:16582] +xref: FMA:16582 +is_a: UBERON:0001271 ! pelvic girdle region +intersection_of: UBERON:0001271 ! pelvic girdle region +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: has_skeleton UBERON:0011090 ! skeleton of right pelvic girdle +relationship: in_right_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0011093 +name: left pelvic girdle region +def: "A pelvic girdle region that is in the left side of a multicellular organism." [OBOL:automatic] +synonym: "left pelvic girdle" EXACT INCONSISTENT [FMA:16583] +xref: FMA:16583 +is_a: UBERON:0001271 ! pelvic girdle region +intersection_of: UBERON:0001271 ! pelvic girdle region +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: has_skeleton UBERON:0011091 ! skeleton of left pelvic girdle +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0011094 +name: vertebra cartilage element +def: "The cartilaginous form of a vertebral element, a skeletal element that forms around the notochord and is part of the vertebral column." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, http://orcid.org/0000-0002-6601-2165, VSAO:0000184] +synonym: "vertebral cartilage condensation" EXACT [VHOG:0000584] +xref: EMAPA:32669 +xref: VHOG:0000584 +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0010913 ! vertebral element +intersection_of: UBERON:0010913 ! vertebral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0011095 ! vertebra pre-cartilage condensation +relationship: has_potential_to_develop_into UBERON:0002412 ! vertebra +relationship: present_in_taxon NCBITaxon:7764 {notes="vertebra-like cartilage in hagfish are homologous to gnathostome vertebrae. mesenchymal cells express Pax1/9 and Twist", source="PMC3157150"} + +[Term] +id: UBERON:0011095 +name: vertebra pre-cartilage condensation +def: "The pre-cartilaginous form of a vertebral element, a skeletal element that forms around the notochord and is part of the vertebral column." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, http://orcid.org/0000-0002-6601-2165, VSAO:0000184] +synonym: "vertebral pre-cartilage condensation" EXACT [VHOG:0000582] +xref: EMAPA:32671 +xref: VHOG:0000582 +is_a: UBERON:0010913 ! vertebral element +intersection_of: UBERON:0010913 ! vertebral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: has_potential_to_develop_into UBERON:0002412 ! vertebra + +[Term] +id: UBERON:0011096 +name: lacrimal nerve +def: "The lacrimal nerve is the smallest of the three branches of the ophthalmic division of the trigeminal nerve." [http://en.wikipedia.org/wiki/Lacrimal_nerve] +synonym: "nervus lacrimalis" EXACT LATIN [http://en.wikipedia.org/wiki/Lacrimal_nerve] +xref: FMA:52628 +xref: http://www.snomedbrowser.com/Codes/Details/280218007 +xref: Lacrimal:nerve +xref: NCIT:C32908 +is_a: UBERON:0011779 ! nerve of head region +intersection_of: UBERON:0001021 ! nerve +intersection_of: innervates UBERON:0001817 ! lacrimal gland +relationship: branching_part_of UBERON:0000348 {source="FMA"} ! ophthalmic nerve +relationship: innervates UBERON:0001817 ! lacrimal gland +relationship: part_of UBERON:0000348 ! ophthalmic nerve + +[Term] +id: UBERON:0011104 +name: epiphysis of fifth metacarpal bone +def: "An epiphysis that is part of a metacarpal bone of digit 5." [OBOL:automatic] +synonym: "fifth metacarpal bone epiphysis" EXACT [FMA:86330] +synonym: "metacarpal 5 epiphysis" EXACT [] +xref: FMA:86330 +is_a: UBERON:0004390 ! epiphysis of metacarpal bone +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0003649 ! metacarpal bone of digit 5 +relationship: part_of UBERON:0003649 ! metacarpal bone of digit 5 + +[Term] +id: UBERON:0011106 +name: cruciate ligament of atlas +def: "A cruciate ligament in the neck forming part of the atlanto-axial joint. It consists of the transverse ligament of the atlas, along with additional fibers above and below." [http://en.wikipedia.org/wiki/Cruciate_ligament_of_the_dens] +synonym: "cruciate ligament of dens" EXACT [http://en.wikipedia.org/wiki/Cruciate_ligament_of_the_dens] +synonym: "cruciform ligament of atlas" EXACT [FMA:25018] +synonym: "cruciform ligament of dens" EXACT [http://en.wikipedia.org/wiki/Cruciate_ligament_of_the_dens] +synonym: "ligamentum cruciforme atlantis" EXACT LATIN [http://en.wikipedia.org/wiki/Cruciate_ligament_of_the_dens] +synonym: "triradiate ligament" RELATED [EMAPA:19010] +xref: EMAPA:19010 +xref: FMA:25018 +xref: http://en.wikipedia.org/wiki/Cruciate_ligament_of_the_dens +xref: http://www.snomedbrowser.com/Codes/Details/182362005 +is_a: UBERON:0000211 ! ligament +is_a: UBERON:0005174 ! dorsal region element +relationship: part_of UBERON:0000220 {inconsistent_with="Wikipedia", source="FMA"} ! atlanto-occipital joint + +[Term] +id: UBERON:0011107 +name: synovial joint of pelvic girdle +def: "A synovial joint that is part of a pelvic girdle region." [OBOL:automatic] +synonym: "joint of pelvic girdle" EXACT [] +synonym: "pelvic girdle joint" EXACT [FMA:35173] +xref: FMA:35173 +xref: http://linkedlifedata.com/resource/umls/id/C0827002 +xref: NCIT:C32890 +xref: UMLS:C0827002 {source="ncithesaurus:Joint_of_the_Pelvic_Girdle"} +is_a: UBERON:0002217 ! synovial joint +is_a: UBERON:0008114 ! joint of girdle +intersection_of: UBERON:0002217 ! synovial joint +intersection_of: part_of UBERON:0001271 ! pelvic girdle region +relationship: connects UBERON:0007830 ! pelvic girdle bone/zone +relationship: part_of UBERON:0001271 ! pelvic girdle region + +[Term] +id: UBERON:0011108 +name: synovial joint of pectoral girdle +def: "A synovial joint that is part of a pectoral girdle region." [OBOL:automatic] +synonym: "joint of shoulder girdle" EXACT [] +synonym: "pectoral girdle joint" EXACT [FMA:35243] +xref: FMA:35243 +xref: http://www.snomedbrowser.com/Codes/Details/303080001 +is_a: UBERON:0002217 ! synovial joint +is_a: UBERON:0008114 ! joint of girdle +intersection_of: UBERON:0002217 ! synovial joint +intersection_of: part_of UBERON:0001421 ! pectoral girdle region +relationship: connects UBERON:0007829 ! pectoral girdle bone +relationship: part_of UBERON:0001421 ! pectoral girdle region + +[Term] +id: UBERON:0011110 +name: humeroulnar joint +def: "The humeroulnar joint, is part of the elbow-joint or the Olecron Joint, between the ulna and humerus bones is the simple hinge-joint, which allows for movements of flexion, extension and circumduction. The Humero-Ulnar Joint is the junction of trochlear notch of the ulna and the trochlea of the humerus. Owing to the obliquity of the trochlea of the humerus, this movement does not take place in the antero-posterior plane of the body of the humerus. When the forearm is extended and supinated, the axis of the arm and forearm are not in the same line; the arm forms an obtuse angle with the forearm. During flexion, however, the forearm and the hand tend to approach the middle line of the body, and thus enable the hand to be easily carried to the face. The accurate adaptation of the trochlea of the humerus, with its prominences and depressions, to the semilunar notch of the ulna, prevents any lateral movement. Flexion is produced by the action of the Biceps brachii and Brachialis, assisted by the Brachioradialis, with a tiny contribution from the muscles arising from the medial epicondyle of the humerus. Extension is produced by the Triceps brachii and AnconC&us, with a tiny contribution from the muscles arising from the lateral epicondyle of the humerus, such as the Extensor digitorum communis." [http://en.wikipedia.org/wiki/Humeroulnar_joint] +subset: pheno_slim +synonym: "articulatio humeroulnaris" EXACT LATIN [FMA:TA] +synonym: "humero-ulnar joint" EXACT [FMA:38854] +xref: FMA:38854 +xref: http://www.snomedbrowser.com/Codes/Details/303064006 +xref: Humeroulnar:joint +is_a: UBERON:0003839 ! forelimb joint +is_a: UBERON:0011139 ! synovial limb joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0000976 ! humerus +intersection_of: connects UBERON:0001424 ! ulna +relationship: connects UBERON:0000976 ! humerus +relationship: connects UBERON:0001424 ! ulna +relationship: part_of UBERON:0001490 {source="FMA"} ! elbow joint + +[Term] +id: UBERON:0011111 +name: humeroradial joint +def: "A hinge joint between the head of the radius and the capitulum of the humerus." [http://en.wikipedia.org/wiki/Humeroradial_joint, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "articulatio humeroradialis" EXACT LATIN [http://en.wikipedia.org/wiki/Humeroradial_joint] +synonym: "humero-radial joint" EXACT [] +xref: FMA:38855 +xref: http://www.snomedbrowser.com/Codes/Details/182171008 +xref: Humeroradial:joint +is_a: UBERON:0003839 ! forelimb joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0000976 ! humerus +intersection_of: connects UBERON:0001423 ! radius bone +relationship: connects UBERON:0000976 ! humerus +relationship: connects UBERON:0001423 ! radius bone +relationship: part_of UBERON:0001490 {source="FMA"} ! elbow joint + +[Term] +id: UBERON:0011112 +name: tibiofibular joint +def: "A joint that connects the tibia and the fibula." [http://en.wikipedia.org/wiki/Tibiofibular_joint, https://orcid.org/0000-0002-6601-2165] +synonym: "fibulatibial joint" EXACT [] +synonym: "fibulotibial joint" EXACT [] +synonym: "tibiafibular joint" EXACT [] +xref: FMA:35181 +xref: http://www.snomedbrowser.com/Codes/Details/244554002 +xref: Tibiofibular:joint +is_a: UBERON:0002210 {source="FMA"} ! syndesmosis +is_a: UBERON:0003840 ! hindlimb joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0000979 ! tibia +intersection_of: connects UBERON:0001446 ! fibula +intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod +relationship: connects UBERON:0000979 ! tibia +relationship: connects UBERON:0001446 ! fibula +relationship: part_of UBERON:0003823 ! hindlimb zeugopod + +[Term] +id: UBERON:0011113 +name: inferior tibiofibular joint +def: "The inferior tibiofibular articulation (tibiofibular syndesmosis) is formed by the rough, convex surface of the medial side of the lower end of the fibula, and a rough concave surface on the lateral side of the tibia. Below, to the extent of about 4 mm. these surfaces are smooth, and covered with cartilage, which is continuous with that of the ankle-joint. The ligaments are: Anterior ligament of the lateral malleolus, Posterior ligament of the lateral malleolus, Inferior transverse ligament of the tibiofibular syndesmosis, Interosseous ligament" [http://en.wikipedia.org/wiki/Inferior_tibiofibular_articulation] +synonym: "distal tibiofibular joint" EXACT [FMA:10465] +synonym: "inferior tibiofibular articulation" RELATED [http://en.wikipedia.org/wiki/Inferior_tibiofibular_articulation] +synonym: "syndesmosis tibiofibularis" EXACT LATIN [FMA:TA] +synonym: "tibiofibular syndesmosis" EXACT [FMA:10465] +xref: FMA:10465 +xref: http://en.wikipedia.org/wiki/Inferior_tibiofibular_articulation +xref: http://www.snomedbrowser.com/Codes/Details/182209000 +is_a: UBERON:0011112 {source="FMA"} ! tibiofibular joint +relationship: connects UBERON:0004410 ! distal epiphysis of fibula + +[Term] +id: UBERON:0011117 +name: superior tibiofibular joint +def: "The superior tibiofibular articulation is an arthrodial joint between the lateral condyle of the tibia and the head of the fibula. The contiguous surfaces of the bones present flat, oval facets covered with cartilage and connected together by an articular capsule and by anterior and posterior ligaments. When the term 'tibiofibular articulation' is used without a modifier, it refers to the superior, and not the inferior tibiofibular articulation." [http://en.wikipedia.org/wiki/Superior_tibiofibular_joint] +synonym: "articulatio tibiofibularis" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_tibiofibular_joint] +synonym: "proximal tibiofibular joint" EXACT [FMA:35184] +synonym: "proximal tibiofibular joint" RELATED [http://en.wikipedia.org/wiki/Superior_tibiofibular_joint] +synonym: "proximal tibiofibular syndesmosis" RELATED [FMA:35184] +synonym: "superior tibiofibular articulation" RELATED [http://en.wikipedia.org/wiki/Superior_tibiofibular_joint] +synonym: "tibiofibular joint" BROAD [http://en.wikipedia.org/wiki/Superior_tibiofibular_joint] +xref: FMA:35184 +xref: http://en.wikipedia.org/wiki/Superior_tibiofibular_joint +xref: http://www.snomedbrowser.com/Codes/Details/182208008 +is_a: UBERON:0011112 ! tibiofibular joint +intersection_of: UBERON:0011112 ! tibiofibular joint +intersection_of: connects UBERON:0008775 ! proximal epiphysis of fibula +intersection_of: connects UBERON:0009985 ! lateral condyle of femur +relationship: connects UBERON:0008775 ! proximal epiphysis of fibula +relationship: connects UBERON:0009985 ! lateral condyle of femur + +[Term] +id: UBERON:0011118 +name: tarsometatarsal joint +def: "The tarsometatarsal articulations are arthrodial joints in the pes." [http://en.wikipedia.org/wiki/Tarsometatarsal_articulations] +subset: pheno_slim +synonym: "articulationes tarsometatarsales" RELATED LATIN [http://en.wikipedia.org/wiki/Tarsometatarsal_articulations] +synonym: "cuboideometatarsal" RELATED [http://en.wikipedia.org/wiki/Tarsometatarsal_articulations] +synonym: "Lisfranc joint" RELATED [http://en.wikipedia.org/wiki/Tarsometatarsal_articulations] +synonym: "tarso-metatarsal join" EXACT [] +synonym: "tarsometatarsal" RELATED [http://en.wikipedia.org/wiki/Tarsometatarsal_articulations] +synonym: "tarsometatarsal articulation" RELATED [http://en.wikipedia.org/wiki/Tarsometatarsal_articulations] +xref: FMA:35216 +xref: http://www.snomedbrowser.com/Codes/Details/182222008 +xref: Tarsometatarsal:articulations +is_a: UBERON:0001487 ! pes joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001447 ! tarsal bone +intersection_of: connects UBERON:0001448 ! metatarsal bone +relationship: connects UBERON:0001447 ! tarsal bone +relationship: connects UBERON:0001448 ! metatarsal bone + +[Term] +id: UBERON:0011119 +name: carpometacarpal joint +def: "The carpometacarpal joints (CMC) are joints in the wrist that articulates the distal row of carpal bones and the proximal bases of the metacarpal bones." [http://en.wikipedia.org/wiki/Carpometacarpal_joint] +synonym: "articulationes carpometacarpeæ" EXACT LATIN [http://en.wikipedia.org/wiki/Carpometacarpal_joint] +synonym: "carpometacarpal" BROAD [http://en.wikipedia.org/wiki/Carpometacarpal_joint] +synonym: "carpometacarpal articulation" RELATED [http://en.wikipedia.org/wiki/Carpometacarpal_joint] +synonym: "CMJ" BROAD [http://en.wikipedia.org/wiki/Carpometacarpal_joint] +xref: Carpometacarpal:joint +xref: FMA:35287 +xref: http://linkedlifedata.com/resource/umls/id/C0224620 +xref: http://www.snomedbrowser.com/Codes/Details/361842002 +xref: NCIT:C32265 +xref: UMLS:C0224620 {source="ncithesaurus:Carpometacarpal_Joint"} +is_a: UBERON:0001489 ! manus joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001435 ! carpal bone +intersection_of: connects UBERON:0002374 ! metacarpal bone +relationship: connects UBERON:0001435 ! carpal bone +relationship: connects UBERON:0002374 ! metacarpal bone + +[Term] +id: UBERON:0011120 +name: laryngeal joint +def: "A skeletal joint that connects a laryngeal cartilage." [OBOL:automatic] +synonym: "joint of larynx" EXACT [FMA:55100] +synonym: "laryngeal articulation" EXACT [FMA:55100] +xref: FMA:55100 +is_a: UBERON:0002217 {source="FMA"} ! synovial joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001739 ! laryngeal cartilage +relationship: connects UBERON:0001739 ! laryngeal cartilage +relationship: part_of UBERON:0010323 ! cranial skeletal system + +[Term] +id: UBERON:0011121 +name: cricothyroid joint +def: "The cricoarytenoid articulation (or joint) is a joint connecting the cricoid cartilage and the thyroid cartilage." [http://en.wikipedia.org/wiki/Cricothyroid_articulation] +synonym: "crico-thyroid joint" RELATED [http://en.wikipedia.org/wiki/Cricothyroid_articulation] +synonym: "cricothyroid articulation" EXACT [FMA:55101] +xref: Cricothyroid:articulation +xref: FMA:55101 +xref: http://linkedlifedata.com/resource/umls/id/C0225540 +xref: http://www.snomedbrowser.com/Codes/Details/361944002 +xref: NCIT:C32402 +xref: UMLS:C0225540 {source="ncithesaurus:Cricothyroid_Joint"} +is_a: UBERON:0011120 {source="FMA"} ! laryngeal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001738 ! thyroid cartilage +intersection_of: connects UBERON:0002375 ! cricoid cartilage +relationship: connects UBERON:0001738 ! thyroid cartilage +relationship: connects UBERON:0002375 ! cricoid cartilage + +[Term] +id: UBERON:0011122 +name: cricoarytenoid joint +def: "The cricoarytenoid articulation (or joint) is a joint connecting the cricoid cartilage and the arytenoid cartilage." [http://en.wikipedia.org/wiki/Cricoarytenoid_articulation] +synonym: "crico-arytenoid joint" EXACT [FMA:55102] +synonym: "crico-arytenoid joint" RELATED [http://en.wikipedia.org/wiki/Cricoarytenoid_articulation] +synonym: "cricoarytenoid articulation" EXACT [FMA:55102] +xref: Cricoarytenoid:articulation +xref: FMA:55102 +xref: http://linkedlifedata.com/resource/umls/id/C0225555 +xref: http://www.snomedbrowser.com/Codes/Details/361945001 +xref: NCIT:C32397 +xref: UMLS:C0225555 {source="ncithesaurus:Cricoarytenoid_Joint"} +is_a: UBERON:0011120 {source="FMA"} ! laryngeal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001740 ! arytenoid cartilage +intersection_of: connects UBERON:0002375 ! cricoid cartilage +relationship: connects UBERON:0001740 ! arytenoid cartilage +relationship: connects UBERON:0002375 ! cricoid cartilage + +[Term] +id: UBERON:0011123 +name: stifle joint +def: "A complex joint in the hind limbs of quadruped mammals such as the sheep, horse or dog. It is the equivalent joint to the human knee. It is often the largest synovial joint in the body." [http://en.wikipedia.org/wiki/Stifle_joint] +synonym: "femoropatellar joint" RELATED [] +xref: http://linkedlifedata.com/resource/umls/id/C1456798 +xref: http://www.snomedbrowser.com/Codes/Details/116010006 +xref: MESH:D013264 +xref: NCIT:C98784 +xref: Stifle:joint +xref: UMLS:C1456798 {source="ncithesaurus:Stifle_Joint"} +is_a: UBERON:0001485 ! knee joint + +[Term] +id: UBERON:0011124 +name: xiphisternal joint +def: "The xiphisternal joint (or xiphisternal synchondrosis) is a location near the bottom of the sternum, where the body of the sternum and the xiphoid process." [http://en.wikipedia.org/wiki/Xiphisternal_joint] +synonym: "synchondrosis xiphisternalis" EXACT [FMA:7503] +synonym: "xiphisternal junction" RELATED [http://en.wikipedia.org/wiki/Xiphisternal_joint] +synonym: "xiphisternal synchdrondosis" RELATED [http://en.wikipedia.org/wiki/Xiphisternal_joint] +xref: FMA:7503 +xref: http://www.snomedbrowser.com/Codes/Details/118923007 +xref: http://www.snomedbrowser.com/Codes/Details/118924001 +xref: Xiphisternal:joint +is_a: UBERON:0002216 {source="FMA"} ! symphysis +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0002207 ! xiphoid process +intersection_of: connects UBERON:0006820 ! body of sternum +relationship: connects UBERON:0002207 ! xiphoid process +relationship: connects UBERON:0006820 ! body of sternum + +[Term] +id: UBERON:0011130 +name: temporomandibular joint primordium +synonym: "temporo-mandibular joint primordium" EXACT [EMAPA:18714] +xref: EMAPA:18714 +is_a: UBERON:0001048 ! primordium +relationship: part_of UBERON:0001694 {source="EMAPA"} ! petrous part of temporal bone + +[Term] +id: UBERON:0011131 +name: intermetacarpal joint +def: "A skeletal joint that connects two adjacent metacarpals[FMA,modified]." [FMA:35288] +synonym: "intermetacarpal" RELATED [http://en.wikipedia.org/wiki/Intermetacarpal_articulations] +synonym: "intermetacarpal articulation" RELATED [http://en.wikipedia.org/wiki/Intermetacarpal_articulations] +xref: FMA:35288 +xref: http://www.snomedbrowser.com/Codes/Details/303065007 +xref: Intermetacarpal:articulations +is_a: UBERON:0001489 ! manus joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0002374 {minCardinality="2", maxCardinality="2"} ! metacarpal bone +relationship: connects UBERON:0002374 {notes="two adjacent metacarpals"} ! metacarpal bone +relationship: part_of UBERON:0004453 ! metacarpus region + +[Term] +id: UBERON:0011132 +name: intercarpal joint +def: "A skeletal joint that connects two carpal bones." [http://orcid.org/0000-0002-6601-2165] +synonym: "carpal joint" EXACT [FMA:35292] +synonym: "intercarpal" RELATED [http://en.wikipedia.org/wiki/Intercarpal_articulations] +synonym: "intercarpal articulation" RELATED [http://en.wikipedia.org/wiki/Intercarpal_articulations] +synonym: "midcarpal articulation" RELATED [http://en.wikipedia.org/wiki/Intercarpal_articulations] +xref: FMA:35292 +xref: http://linkedlifedata.com/resource/umls/id/C1262468 +xref: http://www.snomedbrowser.com/Codes/Details/182176003 +xref: Intercarpal:articulations +xref: NCIT:C32264 +xref: UMLS:C1262468 {source="ncithesaurus:Carpal_Joint"} +is_a: UBERON:0001489 ! manus joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001435 {minCardinality="2", maxCardinality="2"} ! carpal bone +relationship: connects UBERON:0001435 {notes="two adjacent carpals"} ! carpal bone +relationship: part_of UBERON:0004452 {source="FMA"} ! carpal region + +[Term] +id: UBERON:0011133 +name: intermetatarsal joint +def: "A joint that connects two adjacent metatarsals" [http://en.wikipedia.org/wiki/Intermetatarsal_articulations] +xref: FMA:35219 +xref: http://www.snomedbrowser.com/Codes/Details/361868009 +xref: Intermetatarsal:articulations +is_a: UBERON:0001487 ! pes joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001448 {minCardinality="2", maxCardinality="2"} ! metatarsal bone +relationship: connects UBERON:0001448 {notes="two adjacent metatarsals"} ! metatarsal bone +relationship: part_of UBERON:0000983 ! metatarsus region + +[Term] +id: UBERON:0011134 +name: nonsynovial joint +def: "Joint in which the articulating bones or cartilages are connected by ligaments or fibrocartilage without an intervening synovial cavity. Examples: sagittal suture, inferior tibiofibular syndesmosis, costochondral joint, pubic symphysis." [FMA:7491] +synonym: "solid joint" EXACT [FMA:7491] +xref: FMA:7491 +is_a: UBERON:0000982 {source="FMA"} ! skeletal joint + +[Term] +id: UBERON:0011135 +name: intervertebral cartilage +def: "A cartilage element that lies between two successive vertebral centra." [ISBN:0073040584] +xref: AAO:0000795 +is_a: UBERON:0007844 ! cartilage element +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: adjacent_to UBERON:0001075 {minCardinality="2", maxCardinality="2"} ! bony vertebral centrum +relationship: adjacent_to UBERON:0001075 {notes="between two centra"} ! bony vertebral centrum +relationship: part_of UBERON:0001468 {source="FMA", source="MA"} ! intervertebral joint + +[Term] +id: UBERON:0011136 +name: ligament of vertebral column +def: "ligament that joins successive centra. Important in controlling the stiffness of the vertebral column when it flexes." [ISBN:0073040584] +synonym: "intervertebral ligament" BROAD [] +synonym: "vertebral centrum ligament" BROAD [] +synonym: "vertebral column ligament" EXACT [FMA:31892] +xref: FMA:31892 +xref: http://www.snomedbrowser.com/Codes/Details/244590009 +is_a: UBERON:0008846 ! skeletal ligament +intersection_of: UBERON:0008846 ! skeletal ligament +intersection_of: attaches_to UBERON:0001075 ! bony vertebral centrum +relationship: attaches_to UBERON:0001075 ! bony vertebral centrum +relationship: part_of UBERON:0001130 ! vertebral column + +[Term] +id: UBERON:0011137 +name: axial skeletal system +def: "Subdivision of the skeletal system which consists of the axial skeleton plus associated joints." [https://orcid.org/0000-0002-6601-2165] +xref: FMA:7483 +is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system +relationship: has_part UBERON:0000982 ! skeletal joint +relationship: has_part UBERON:0005944 ! axial skeleton plus cranial skeleton + +[Term] +id: UBERON:0011138 +name: postcranial axial skeletal system +def: "Subdivision of the skeletal system which consists of the postcranial axial skeleton plus associated joints." [https://github.com/obophenotype/uberon/issues/44, https://orcid.org/0000-0002-6601-2165] +synonym: "axial skeletal system" BROAD [https://github.com/obophenotype/uberon/wiki/The-axial-skeleton] +synonym: "post-cranial axial skeletal system" EXACT [] +xref: FMA:302077 +is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system +property_value: dc-contributor https://github.com/cmungall +relationship: develops_from UBERON:0003089 {source="cjm"} ! sclerotome + +[Term] +id: UBERON:0011139 +name: synovial limb joint +def: "Any synovial joint that is part of a (free) limb." [https://orcid.org/0000-0002-6601-2165] +comment: Most limb joints are synovial, but a few such as the tibiofibular joints are syndesmoses. +synonym: "synovial joint of free limb segment" EXACT [FMA:258776] +xref: FMA:258776 +is_a: UBERON:0002217 ! synovial joint +is_a: UBERON:0003657 ! limb joint +intersection_of: UBERON:0002217 ! synovial joint +intersection_of: part_of UBERON:0002101 ! limb + +[Term] +id: UBERON:0011140 +name: superficial part of masseter muscle +synonym: "masseter, superficial" EXACT [FEED:FEED] +synonym: "pars profunda musculus masseterica superficialis" EXACT LATIN [FMA:49000, FMA:TA] +synonym: "pars superficialis (musculus masseter)" EXACT [FMA:49000] +synonym: "pars superficialis of masseter muscle" EXACT [] +synonym: "superficial layer of masseter" EXACT [FMA:49000] +synonym: "superficial part of masseter" EXACT [FMA:49000] +xref: FMA:49000 +xref: http://www.snomedbrowser.com/Codes/Details/142208007 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0034944 ! zone of organ +intersection_of: UBERON:0034944 ! zone of organ +intersection_of: in_superficial_part_of UBERON:0001597 ! masseter muscle +relationship: in_superficial_part_of UBERON:0001597 ! masseter muscle +relationship: part_of UBERON:0001597 ! masseter muscle + +[Term] +id: UBERON:0011141 +name: appendicular ossicle +def: "Ossicle that is part of the appendicular skeleton." [PSPUB:0000169, VSAO:0000131] +comment: Examples of appendicular ossicles include the patella and meniscus of the knee joint. +synonym: "ossicle of appendicular skeleton" EXACT [OBOL:automatic] +xref: VSAO:0000131 +xref: XAO:0004194 +is_a: UBERON:0010911 ! ossicle +intersection_of: UBERON:0010911 ! ossicle +intersection_of: part_of UBERON:0002091 ! appendicular skeleton +relationship: part_of UBERON:0002091 ! appendicular skeleton + +[Term] +id: UBERON:0011142 +name: axial ossicle +def: "Ossicle that is part of the axial skeleton." [PSPUB:0000169, VSAO:0000133] +comment: Examples of axial ossicles include the ossified tendons adjacent to the neural spines of the vertebral column. +synonym: "ossicle of axial skeleton" EXACT [OBOL:automatic] +synonym: "ossicle of postcranial-axial skeleton" EXACT [OBOL:automatic] +synonym: "vertebral ossicle" RELATED [OBOL:automatic] +xref: VSAO:0000133 +is_a: UBERON:0010911 ! ossicle +intersection_of: UBERON:0010911 ! ossicle +intersection_of: part_of UBERON:0002090 ! postcranial axial skeleton +relationship: part_of UBERON:0002090 ! postcranial axial skeleton + +[Term] +id: UBERON:0011143 +name: upper urinary tract +def: "Subdivision of urinary system which consists of the kidney and the ureters." [FMA:45658] +subset: pheno_slim +xref: FMA:45658 +xref: galen:UpperUrinaryTract +xref: http://www.snomedbrowser.com/Codes/Details/181413006 +xref: NCIT:C61107 +is_a: UBERON:0000477 ! anatomical cluster +relationship: has_part UBERON:0000056 ! ureter +relationship: has_part UBERON:0002113 ! kidney +relationship: in_lateral_side_of UBERON:0001008 {source="FMA-abduced-lr"} ! renal system +relationship: part_of UBERON:0001008 {source="FMA"} ! renal system + +[Term] +id: UBERON:0011144 +name: adductor muscle of hip +def: "." [http://en.wikipedia.org/wiki/Adductor_muscles_of_the_hip] +synonym: "adductor group (leg)" EXACT [MA:0002267] +synonym: "muscle of adductor group" RELATED [] +xref: BTO:0000030 +xref: EMAPA:19166 +xref: http://en.wikipedia.org/wiki/Adductor_muscles_of_the_hip +xref: http://www.snomedbrowser.com/Codes/Details/181670005 +xref: http://www.snomedbrowser.com/Codes/Details/368101007 +xref: MA:0002267 +is_a: UBERON:0010890 ! pelvic complex muscle +is_a: UBERON:0011145 ! adductor muscle +intersection_of: UBERON:0011145 ! adductor muscle +intersection_of: part_of UBERON:0010709 ! pelvic complex +relationship: has_muscle_origin UBERON:0001272 ! innominate bone +relationship: innervated_by UBERON:0005465 {notes="a small part of adductor magnus is innervated by the tibial nerve", source="dbpedia"} ! obturator nerve + +[Term] +id: UBERON:0011145 +name: adductor muscle +def: "A muscle capable of adduction. Adduction is a movement which brings a part of the anatomy closer to the middle sagittal plane of the body. It is opposed to abduction." [http://en.wikipedia.org/wiki/Adduction, http://en.wikipedia.org/wiki/Adductor_muscle] +subset: functional_classification +synonym: "adductor" RELATED [] +xref: Adductor:muscle +xref: FMA:74998 +xref: TAO:0002136 +xref: ZFA:0005268 +is_a: UBERON:0014892 ! skeletal muscle organ + +[Term] +id: UBERON:0011146 +name: silk gland +def: "Any of the glands in silk-spinning insects and spiders that secrete a protein liquid that hardens into silk on exposure to air." [BTO:0001250] +xref: BTO:0001250 +is_a: UBERON:0002365 {source="BTO"} ! exocrine gland +intersection_of: UBERON:0002530 ! gland +intersection_of: produces UBERON:0012245 ! silk +relationship: produces UBERON:0012245 ! silk + +[Term] +id: UBERON:0011147 +name: Verson's gland +def: "A gland found in the larvae of lepidoptera. Each gland is made of three cells: the secretory cell, the reservoir cell and the canal cell." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0019319 ! exocrine gland of integumental system +relationship: part_of UBERON:0007376 ! outer epithelium + +[Term] +id: UBERON:0011148 +name: submucosal gland +def: "Gland of the lamina epithelialis mucosae which perforate the lamina muscularis, with their adenomeres located in the submucosal connective tissue." [BTO:0003751, http://en.wikipedia.org/wiki/Submucosal_glands] +xref: BTO:0003751 +xref: EMAPA:37970 {source="MA:th"} +xref: Submucosal:glands +is_a: UBERON:0000414 ! mucous gland +intersection_of: UBERON:0000414 ! mucous gland +intersection_of: located_in UBERON:0000009 ! submucosa +relationship: continuous_with UBERON:0003350 {notes="perforates"} ! epithelium of mucosa +relationship: located_in UBERON:0000009 ! submucosa + +[Term] +id: UBERON:0011149 +name: Marshall's gland +def: "A paired hollow organ in the genito-urinary apparatus of Raja (and probably other skates and rays) whose cavity is fluid filled." [http://www.briancoad.com/Dictionary/Complete%20Dictionary.htm] +synonym: "alkaline gland" RELATED [BTO:0001661] +xref: BTO:0001661 +is_a: UBERON:0002365 ! exocrine gland +relationship: part_of UBERON:0001008 {source="BTO"} ! renal system +relationship: present_in_taxon NCBITaxon:7858 + +[Term] +id: UBERON:0011150 +name: pharyngeal arch derived gill +def: "A gill that develops_from a pharyngeal gill precursor." [OBOL:automatic] +subset: efo_slim +subset: uberon_slim +synonym: "branchia" RELATED [BTO:0000518] +synonym: "gills" RELATED PLURAL [VHOG:0001214] +xref: BTO:0000518 +xref: EFO:0000933 +xref: GAID:1218 +xref: http://linkedlifedata.com/resource/umls/id/C0017558 +xref: MAT:0000134 +xref: MIAA:0000134 +xref: NCIT:C92593 +xref: OpenCyc:Mx4rvVi9dZwpEbGdrcN5Y29ycA +xref: TAO:0000354 +xref: UMLS:C0017558 {source="ncithesaurus:Gill"} +xref: VHOG:0001214 +xref: XAO:0000120 +xref: ZFA:0000354 +is_a: UBERON:0002535 ! gill +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0002535 ! gill +intersection_of: develops_from UBERON:0008894 ! pharyngeal gill precursor +relationship: develops_from UBERON:0008894 ! pharyngeal gill precursor + +[Term] +id: UBERON:0011151 +name: jaw depressor muscle +def: "A muscle whose action is to depress the lower jaw." [https://doi.org/10.1006/bijl.2000.0436, https://github.com/obophenotype/uberon/issues/232] +synonym: "branchiomandibularis" NARROW SENSU [https://doi.org/10.1006/bijl.2000.0436] +synonym: "coracomandibularis" NARROW SENSU [https://doi.org/10.1006/bijl.2000.0436] +synonym: "depressor gnathalis" NARROW SENSU [https://doi.org/10.1006/bijl.2000.0436] +synonym: "geniohyoideus" NARROW SENSU [https://doi.org/10.1006/bijl.2000.0436, TAO:0000612] +synonym: "geniohyoideus muscle" NARROW SENSU [https://doi.org/10.1006/bijl.2000.0436] +synonym: "geniothoracis" NARROW SENSU [https://doi.org/10.1006/bijl.2000.0436] +synonym: "protractor hyoidei" NARROW PLURAL [TAO:0000612] +synonym: "protractor hyoideus" NARROW SENSU [https://doi.org/10.1006/bijl.2000.0436] +xref: AAO:0010655 +xref: TAO:0000612 +xref: XAO:0004127 +is_a: UBERON:0005493 ! hyoid muscle + +[Term] +id: UBERON:0011152 +name: dorsal hyoid arch skeleton +synonym: "dorsal hyoid arch" EXACT [ZFA:0001401] +synonym: "dorsal pharyngeal arch 2 skeleton" EXACT [] +synonym: "dorsal visceral arch 2" EXACT [ZFA:0001401] +xref: AAO:0010371 +xref: TAO:0001401 +xref: XAO:0003178 +xref: ZFA:0001401 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010912 ! subdivision of skeleton +relationship: part_of UBERON:0005884 {source="AAO"} ! hyoid arch skeleton + +[Term] +id: UBERON:0011153 +name: ventral hyoid arch skeleton +subset: efo_slim +synonym: "ventral hyoid arch" EXACT [ZFA:0001402] +synonym: "ventral pharyngeal arch 2 skeleton" EXACT [] +synonym: "ventral visceral arch 2" EXACT [ZFA:0001402] +xref: AAO:0010372 +xref: EFO:0003684 +xref: TAO:0001402 +xref: XAO:0003179 +xref: ZFA:0001402 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010912 ! subdivision of skeleton +relationship: part_of UBERON:0005884 {source="AAO"} ! hyoid arch skeleton + +[Term] +id: UBERON:0011154 +name: gular region +def: "Surface structure that extends from the chin covering pharynx and larynx." [http://orcid.org/0000-0002-6601-2165] +xref: TAO:0002286 +is_a: UBERON:0003102 {source="TAO"} ! surface structure +relationship: part_of UBERON:0007811 ! craniocervical region + +[Term] +id: UBERON:0011155 +name: Sylvian cistern +def: "The subarachnoid space associated with the lateral cerebral sulcus (Sylvian fissure); contains the M1 segment of the middle cerebral artery and the origin of lenticulostriate arteries, and proximal parts of the middle cerebral artery" [http://www.mondofacto.com/facts/dictionary?Sylvian+cistern] +xref: http://linkedlifedata.com/resource/umls/id/C1515104 +xref: NCIT:C33714 +xref: UMLS:C1515104 {source="ncithesaurus:Sylvian_Cistern"} +is_a: UBERON:0004050 ! subarachnoid cistern +relationship: adjacent_to UBERON:0002721 ! lateral sulcus + +[Term] +id: UBERON:0011156 +name: facial skeleton +def: "Subdivision of skull that consists of the facial bones." [http://en.wikipedia.org/wiki/Facial_skeleton, http://www.bartleby.com/107/37.html, https://orcid.org/0000-0002-6601-2165, MP:0005274] +subset: pheno_slim +synonym: "facial bone" RELATED [MA:0000318] +synonym: "facial skeleton" EXACT [FMA:53673] +synonym: "ossa facialia" RELATED LATIN [http://en.wikipedia.org/wiki/Facial_skeleton] +synonym: "ossa faciei" RELATED LATIN [http://en.wikipedia.org/wiki/Facial_skeleton] +synonym: "viscerocranium" RELATED INCONSISTENT [MA:0000318] +xref: EHDAA2:0002206 +xref: EHDAA:8361 +xref: EMAPA:18022 +xref: Facial:skeleton +xref: FMA:53673 +xref: MA:0000318 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0011158 {source="FMA"} ! primary subdivision of skull +relationship: part_of UBERON:0001456 {source="FMA"} ! face + +[Term] +id: UBERON:0011157 +name: cuneiform cartilage +def: "The cuneiform cartilages of the larynx are two small, elongated pieces of yellow elastic cartilage, placed one on either side, in the aryepiglottic fold, where they give rise to small whitish elevations on the surface of the mucous membrane, just in front of the arytenoid cartilages." [http://en.wikipedia.org/wiki/Cuneiform_cartilages] +synonym: "cartilage of Morgagni" EXACT [FMA:55111] +synonym: "cartilage of Wrisberg" EXACT [FMA:55111] +synonym: "cartilagines cuneiformes" RELATED LATIN [http://en.wikipedia.org/wiki/Cuneiform_cartilages] +synonym: "cartilago apicalis intermedia" RELATED [AAO:0000690] +synonym: "cartilago apicalis seu cartilago Santoriniana" RELATED [AAO:0000690] +synonym: "Wrisbergi cartilage" EXACT [AAO:0000690] +xref: AAO:0000690 +xref: Cuneiform:cartilages +xref: FMA:55111 +xref: http://www.snomedbrowser.com/Codes/Details/264456009 +xref: NCIT:C32417 +is_a: UBERON:0001739 {source="FMA"} ! laryngeal cartilage +is_a: UBERON:0001996 {source="Wikipedia"} ! elastic cartilage tissue +is_a: UBERON:0003583 ! larynx connective tissue + +[Term] +id: UBERON:0011158 +name: primary subdivision of skull +def: "The skull can be divided into two: the neurocranium and the facial skeleton" [http://orcid.org/0000-0002-6601-2165] +subset: non_informative +synonym: "skull subdivision" EXACT [FMA:54964] +synonym: "subdivision of skull" EXACT [FMA:54964] +xref: FMA:54964 +is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system +relationship: part_of UBERON:0003129 ! skull + +[Term] +id: UBERON:0011159 +name: primary subdivision of cranial skeletal system +subset: non_informative +is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system +relationship: part_of UBERON:0010323 ! cranial skeletal system + +[Term] +id: UBERON:0011160 +name: nasal suture +def: "A suture joining a nasal bone to another bone." [http://orcid.org/0000-0002-6601-2165] +xref: http://www.snomedbrowser.com/Codes/Details/368992007 +is_a: UBERON:0009199 ! facial suture +intersection_of: UBERON:0009199 ! facial suture +intersection_of: connects UBERON:0001681 ! nasal bone +relationship: connects UBERON:0001681 ! nasal bone + +[Term] +id: UBERON:0011161 +name: spheno-occipital synchondrosis +def: "The cartilaginous junction between the basisphenoid and basioccipital bones of the mammalian skull" [http://www.merriam-webster.com/medical/spheno-occipital%20synchondrosis] +xref: FMA:54818 +xref: http://www.snomedbrowser.com/Codes/Details/140895003 +is_a: UBERON:0001725 ! cranial synchondrosis +intersection_of: UBERON:0001725 ! cranial synchondrosis +intersection_of: connects UBERON:0001692 ! basioccipital bone +intersection_of: connects UBERON:0006428 ! basisphenoid bone +relationship: connects UBERON:0001692 ! basioccipital bone +relationship: connects UBERON:0006428 ! basisphenoid bone + +[Term] +id: UBERON:0011162 +name: supraoccipital cartilage element +def: "A cartilaginous condensation that has the potential to develop into a supraoccipital bone." [OBOL:automatic] +synonym: "non-squamous part of supraoccipital bone" RELATED [EMAPA:18341] +synonym: "supra-occipital cartilage condensation" EXACT [] +synonym: "supraoccipital cartilage condensation" EXACT [EMAPA:18341] +xref: EMAPA:18341 +is_a: UBERON:0003932 ! cartilage element of chondrocranium +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015015 ! supraoccipital endochondral element +intersection_of: UBERON:0015015 ! supraoccipital endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0011163 ! supraoccipital pre-cartilage condensation + +[Term] +id: UBERON:0011163 +name: supraoccipital pre-cartilage condensation +def: "A pre-cartilage condensation that has the potential to develop into a supraoccipital bone." [OBOL:automatic] +synonym: "supra-occipital pre-cartilage condensation" EXACT [EHDAA2:0001963] +xref: EHDAA2:0001963 +xref: EHDAA:9534 +is_a: UBERON:0005253 ! head mesenchyme +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015015 ! supraoccipital endochondral element +intersection_of: UBERON:0005866 ! pre-cartilage condensation +intersection_of: has_potential_to_develop_into UBERON:0004747 ! supraoccipital bone +relationship: develops_from UBERON:0009617 {source="EHDAA2-inferred"} ! head paraxial mesoderm +relationship: has_potential_to_develop_into UBERON:0004747 ! supraoccipital bone + +[Term] +id: UBERON:0011164 +name: neurocranium bone +def: "A bone that is part of a neurocranium [Automatically generated definition]." [OBOL:automatic] +synonym: "chondrocranium bone" EXACT [MA:0001478] +xref: EMAPA:35238 +xref: http://www.snomedbrowser.com/Codes/Details/120229002 +xref: MA:0001478 +is_a: UBERON:0004766 ! cranial bone +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0001703 ! neurocranium + +[Term] +id: UBERON:0011165 +name: crico-esophageal tendon +def: "Longitudinal fibers of the esophagus that attaches to the posterior aspect of the cricoid cartilage of the larynx" [http://www.medilexicon.com/medicaldictionary.php?t=90131] +synonym: "crico-oesophageal tendon" EXACT [] +synonym: "cricoesophageal tendon" EXACT [] +synonym: "Gillette suspensory ligament" RELATED [http://www.medilexicon.com/] +synonym: "suspensory ligament of esophagus" RELATED [http://www.medilexicon.com/] +synonym: "tendo cricoesophageus" EXACT [http://www.medilexicon.com/] +xref: FMA:76887 +xref: http://linkedlifedata.com/resource/umls/id/C0227182 +xref: http://www.snomedbrowser.com/Codes/Details/322841005 +xref: NCIT:C32399 +xref: UMLS:C0227182 {source="ncithesaurus:Cricoesophageal_Tendon"} +is_a: UBERON:0008845 {source="FMA"} ! nonskeletal ligament +relationship: attaches_to UBERON:0002375 ! cricoid cartilage + +[Term] +id: UBERON:0011166 +name: patellofemoral joint +synonym: "femorapatellar joint" EXACT [] +synonym: "femoropatellar joint" EXACT [] +synonym: "patello femoral joint" EXACT [galen:PatelloFemoralJoint] +xref: FMA:43574 +xref: galen:PatelloFemoralJoint +xref: http://www.snomedbrowser.com/Codes/Details/182202009 +is_a: UBERON:0003840 ! hindlimb joint +is_a: UBERON:0011139 {source="FMA"} ! synovial limb joint +relationship: connects UBERON:0000981 ! femur +relationship: connects UBERON:0002446 ! patella +relationship: part_of UBERON:0001485 ! knee joint + +[Term] +id: UBERON:0011167 +name: septomaxilla bone +def: "Paired, intramembranous bones located within the nasal capsules and embedded in the nasal cartilages; it is pierced by the ductus nasolacrimalis." [AAO:0000556, https://github.com/obophenotype/uberon/issues/97] +comment: A small dermal bone of the facial series that is often absent; when present it is usually sunken beneath the surface bones and aids in forming the nasal cavity +synonym: "internasale" RELATED [AAO:0000556] +synonym: "intranasal" RELATED [AAO:0000556] +synonym: "lacrimale" RELATED [AAO:0000556] +synonym: "le cornet" RELATED [AAO:0000556] +synonym: "nariale" RELATED [AAO:0000556] +synonym: "nasale" RELATED [AAO:0000556] +synonym: "os internasale" RELATED [AAO:0000556] +synonym: "os nariale" RELATED [AAO:0000556] +synonym: "septomaxilla" EXACT [AAO:0000556] +synonym: "septomaxillary" RELATED [AAO:0000556] +synonym: "turbinale" RELATED [AAO:0000556] +xref: AAO:0000556 +is_a: UBERON:0002514 ! intramembranous bone +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0008907 ! dermal bone +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +relationship: part_of UBERON:0006813 {source="AAO"} ! nasal skeleton + +[Term] +id: UBERON:0011168 +name: postfrontal bone +def: "A bone behind and above the orbit of which it commonly forms part of the border that is present in many vertebrates and corresponds to the postorbital process of the frontal bone of various birds and mammals" [http://www.merriam-webster.com/dictionary/postfrontal] +synonym: "postfrontal" BROAD [] +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0008907 {source="ISBN:0073040584"} ! dermal bone +relationship: part_of UBERON:0003113 {notes="orbital series", source="ISBN:0073040584"} ! dermatocranium +relationship: present_in_taxon NCBITaxon:8570 {source="Wikipedia"} + +[Term] +id: UBERON:0011169 +name: postorbital bone +def: "The postorbital is one of the bones in vertebrate skulls which forms a portion of the dermal skull roof and, sometimes, a ring about the orbit. Generally, it is located behind the postfrontal and posteriorly to the orbital fenestra. In some vertebrates, the postorbital is fused with the postfrontal to create a postorbitofrontal." [http://en.wikipedia.org/wiki/Postorbital_bone] +synonym: "postorbital" BROAD [] +xref: Postorbital:bone +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0008907 {source="ISBN:0073040584"} ! dermal bone +relationship: part_of UBERON:0003113 {notes="orbital series", source="ISBN:0073040584"} ! dermatocranium + +[Term] +id: UBERON:0011170 +name: quadrate-articular joint +def: "A skeletal joint that connects quadrate and articular bones." [http://evolution.berkeley.edu/evolibrary/article/evograms_05, https://orcid.org/0000-0002-6601-2165] +synonym: "quadrate-anguloarticular joint" RELATED [ZFA:0005484] +xref: TAO:0001802 +xref: ZFA:0005484 +is_a: UBERON:0011171 ! joint connecting upper and lower jaws +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0004744 ! articular/anguloarticular +intersection_of: connects UBERON:0006597 ! quadrate bone +relationship: connects UBERON:0004744 ! articular/anguloarticular +relationship: connects UBERON:0006597 ! quadrate bone + +[Term] +id: UBERON:0011171 +name: joint connecting upper and lower jaws +def: "Synovial joint that articulates bones of upper and lower jaw." [http://evolution.berkeley.edu/evolibrary/article/evograms_05, https://orcid.org/0000-0002-6601-2165] +synonym: "craniomandibular joint" NARROW [] +synonym: "jaw joint" BROAD [] +xref: NCIT:C32888 +is_a: UBERON:0002217 {source="abduced"} ! synovial joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0003277 ! skeleton of upper jaw +intersection_of: connects UBERON:0003278 ! skeleton of lower jaw +relationship: connects UBERON:0003277 ! skeleton of upper jaw +relationship: connects UBERON:0003278 ! skeleton of lower jaw + +[Term] +id: UBERON:0011172 +name: retrorubral area of midbrain reticular nucleus +def: "The term retrorubral area of the midbrain reticular nucleus refers to a region of the rat brain caudal and dorsal to the ventral tegmental area. It is one of three parts of the midbrain reticular nucleus; the other two are the magnocellular part of the midbrain reticular nucleus and the parvicellular part of the midbrain reticular nucleus (Swanson-2004). BrainInfo distinguishes between the Retrorubral area of the midbrain reticular formation and the retrorubral nucleus." [NLXANAT:20090301] +synonym: "A8" BROAD [NLXANAT:20090301] +synonym: "area 11 of Brodmann (guenon)" RELATED [NeuroNames:1036] +synonym: "area orbitalis interna" RELATED LATIN [NeuroNames:1036] +synonym: "brodmann's area 11" RELATED [NeuroNames:1036] +synonym: "midbraiin reticular nucleus, retrorubral area" RELATED [BAMS:RR] +synonym: "midbrain reticular nucleus, retrorubral area" EXACT [ABA:RR] +synonym: "retrorubal field" BROAD [http://braininfo.rprc.washington.edu/] +synonym: "retrorubral area" EXACT [NLXANAT:20090301] +synonym: "retrorubral field" RELATED [BAMS:RR] +synonym: "retrorubral nucleus" RELATED [BAMS:RR] +xref: BAMS:RR +xref: DHBA:12289 +xref: DMBA:16884 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1036 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1036 {source="NLXANAT:20090301"} +xref: MBA:246 +xref: NLXANAT:20090301 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0007415 {source="Obol"} ! nucleus of midbrain reticular formation + +[Term] +id: UBERON:0011173 +name: anterior division of bed nuclei of stria terminalis +def: "One of two divisions of the nuclei of stria terminalis based on topology, connectivity and multiple stains in the rat ( Swanson-2004 ) and the mouse ( Dong-2004 ). The other division consists of the posterior nuclei of stria terminalis. The anterior division includes the anterolateral area of stria terminalis, anteromedial area of stria terminalis, oval nucleus of stria terminalis, juxtacapsular nucleus of stria terminalis, rhomboid nucleus of stria terminalis, dorsomedial nucleus of stria terminalis, fusiform nucleus of stria terminalis, ventral nucleus of stria terminalis, and the magnocellular nucleus of stria terminalis" [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2753] +synonym: "anterior division" BROAD [MA:0000926] +synonym: "anterior nuclei of stria terminalis" EXACT [http://braininfo.rprc.washington.edu] +synonym: "anterior part of the bed nucleus of the stria terminalis" RELATED [BAMS:BSTa] +synonym: "bed nuclei of the stria terminalis anterior division" RELATED [BAMS:BSTa] +synonym: "bed nuclei of the stria terminalis, anterior division" EXACT [ABA:BSTa] +synonym: "bed nuclei of the stria terminals anterior division" RELATED [BAMS:BSTa] +synonym: "bed nucleus of the stria terminalis anterior division" RELATED [BAMS:BSTa] +synonym: "bed nucleus of the stria terminalis anterior part" RELATED [BAMS:BSTa] +synonym: "bed nucleus of thestria terminalis anterior division" RELATED [BAMS:BSTa] +xref: BAMS:BSTa +xref: EMAPA:37407 {source="MA:th"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2753 +xref: MA:0000926 +xref: MBA:359 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +disjoint_from: UBERON:0011177 {source="lexical"} ! posterior division of bed nuclei of stria terminalis +relationship: part_of UBERON:0001880 {source="MA"} ! bed nucleus of stria terminalis + +[Term] +id: UBERON:0011175 +name: fusiform nucleus of stria terminalis +def: "." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3218] +synonym: "bed nuclei of the stria terminalis anterior division fusiform nucleus" RELATED [BAMS:BSTfu] +synonym: "bed nuclei of the stria terminalis fusiform nucleus" RELATED [BAMS:BSTfu] +synonym: "bed nuclei of the stria terminalis, anterior division, fusiform nucleus" EXACT [ABA:BSTfu] +synonym: "bed nuclei of the stria terminals anterior division fusiform nucleus" RELATED [BAMS:BSTfu] +synonym: "bed nucleus of the stria terminalis fusiform nucleus" RELATED [BAMS:BSTfu] +synonym: "bed nucleus of the stria terminalis fusiform part" RELATED [BAMS:BSTfu] +synonym: "fusiform nucleus" BROAD [MA:0000927] +xref: BAMS:BSTfu +xref: EMAPA:37591 {source="MA:th"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3218 +xref: MA:0000927 +xref: MBA:513 +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0011173 {source="MA"} ! anterior division of bed nuclei of stria terminalis + +[Term] +id: UBERON:0011176 +name: oval nucleus of stria terminalis +def: "." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3214] +synonym: "bed nuclei of the stria terminalis, anterior division, oval nucleus" EXACT [ABA:BSTov] +synonym: "oval nucleus" EXACT [MA:0000929] +xref: EMAPA:37667 {source="MA:th"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3214 +xref: MA:0000929 +xref: MBA:554 +xref: NLX:77783 +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0011173 {source="MA"} ! anterior division of bed nuclei of stria terminalis + +[Term] +id: UBERON:0011177 +name: posterior division of bed nuclei of stria terminalis +def: "One of two divisions of the nuclei of stria terminalis based on topology, connectivity and multiple stains in the rat ( Swanson-2004 ) and the mouse ( Dong-2004 ). The other division consists of the anterior nuclei of stria terminalis. The posterior division includes the principal nucleus of stria terminalis, interfascicular nucleus of stria terminalis, transverse nucleus of stria terminalis, premedullary nucleus of stria terminalis, dorsal nucleus of stria terminalis, the strial extension of stria terminalis, and the cell sparse zone of stria terminalis." [http://braininfo.rprc.washington.edu/CentralDirectory.aspx?ID=2754] +synonym: "bed nuclei of the stria terminalis posterior division" RELATED [BAMS:BSTp] +synonym: "bed nuclei of the stria terminalis, posterior division" EXACT [ABA:BSTp] +synonym: "bed nucleus of stria terminalis posterior part" RELATED [BAMS:BSTp] +synonym: "bed nucleus of the stria terminalis posterior division" RELATED [BAMS:BSTp] +synonym: "posterior division" BROAD [MA:0000930] +synonym: "posterior nuclei of stria terminalis" EXACT [http://braininfo.rprc.washington.edu] +synonym: "posterior part of the bed nucleus of the stria terminalis" RELATED [BAMS:BSTp] +xref: BAMS:BSTp +xref: EMAPA:37408 {source="MA:th"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2754 +xref: MA:0000930 +xref: MBA:367 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001880 {source="MA"} ! bed nucleus of stria terminalis + +[Term] +id: UBERON:0011178 +name: principal nucleus of stria terminalis +def: "." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3221] +synonym: "bed nuclei of the stria terminalis posterior division principal nucleus" RELATED [BAMS:BSTpr] +synonym: "bed nuclei of the stria terminalis principal nucleus" RELATED [BAMS:BSTpr] +synonym: "bed nuclei of the stria terminalis, posterior division, principal nucleus" EXACT [ABA:BSTpr] +synonym: "bed nucleus of the stria terminalis principal (encapsulated) nucleus" RELATED [BAMS:BSTpr] +synonym: "principal nucleus" BROAD [MA:0000931] +xref: BAMS:BSTpr +xref: EMAPA:37726 {source="MA:th"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3221 +xref: MA:0000931 +xref: MBA:578 +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0011177 {source="MA"} ! posterior division of bed nuclei of stria terminalis + +[Term] +id: UBERON:0011179 +name: transverse nucleus of stria terminalis +def: "." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3223] +synonym: "bed nuclei of the stria terminalis posterior division transverse nucleus" RELATED [BAMS:BSTtr] +synonym: "bed nuclei of the stria terminalis transverse nucleus" RELATED [BAMS:BSTtr] +synonym: "bed nuclei of the stria terminalis, posterior division, transverse nucleus" EXACT [ABA:BSTtr] +synonym: "bed nucleus of the stria terminalis transverse nucleus" RELATED [BAMS:BSTtr] +synonym: "transverse nucleus" BROAD [MA:0000932] +xref: BAMS:BSTtr +xref: EMAPA:37727 {source="MA:th"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3223 +xref: MA:0000932 +xref: MBA:594 +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0011177 {source="MA"} ! posterior division of bed nuclei of stria terminalis + +[Term] +id: UBERON:0011183 +name: corpus spongiosum of penis +def: "Corpus spongiosum (also known as corpus cavernosum urethrae in older texts) is the mass of spongy tissue surrounding the male urethra within the penis." [http://en.wikipedia.org/wiki/Corpus_spongiosum_penis] +synonym: "corpus cavernosum urethra" RELATED DEPRECATED [http://en.wikipedia.org/wiki/Corpus_spongiosum_penis] +synonym: "corpus cavernosum urethrae" RELATED DEPRECATED [http://en.wikipedia.org/wiki/Corpus_spongiosum_penis] +synonym: "corpus spongiosum" RELATED [http://en.wikipedia.org/wiki/Corpus_spongiosum_penis] +synonym: "spongiose body of penis" EXACT [FMA:19617] +xref: EMAPA:29850 +xref: EMAPA:29856 +xref: FMA:19617 +xref: http://en.wikipedia.org/wiki/Corpus_spongiosum_penis +xref: http://linkedlifedata.com/resource/umls/id/C1522442 +xref: http://www.snomedbrowser.com/Codes/Details/279712008 +xref: NCIT:C32384 +xref: UMLS:C1522442 {source="ncithesaurus:Corpus_Spongiosum"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0008324 ! erectile tissue +is_a: UBERON:0009010 ! periurethral tissue +relationship: part_of UBERON:0000989 ! penis + +[Term] +id: UBERON:0011184 +name: epithelium of crypt of Lieberkuhn +def: "An epithelium that is part of a crypt of Lieberkuhn." [OBOL:automatic] +synonym: "crypt epithelium" BROAD [] +synonym: "intestinal crypt epithelium" EXACT [] +xref: http://linkedlifedata.com/resource/umls/id/C2826787 +xref: NCIT:C83191 +xref: UMLS:C2826787 {source="ncithesaurus:Crypt_Epithelium"} +is_a: UBERON:0001277 ! intestinal epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001983 ! crypt of Lieberkuhn +relationship: part_of UBERON:0001983 ! crypt of Lieberkuhn + +[Term] +id: UBERON:0011185 +name: gastrointestinal sphincter +def: "A sphincter muscle that is part of the gastrointestinal system" [OBOL:automatic] +xref: http://linkedlifedata.com/resource/umls/id/C1517464 +xref: NCIT:C32669 +xref: UMLS:C1517464 {source="ncithesaurus:Gastrointestinal_Sphincter"} +is_a: UBERON:0004590 ! sphincter muscle +is_a: UBERON:0013765 ! digestive system element +intersection_of: UBERON:0004590 ! sphincter muscle +intersection_of: part_of UBERON:0005409 ! alimentary part of gastrointestinal system +relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system + +[Term] +id: UBERON:0011186 +name: Krause's gland +def: "small, mucous accessory lacrimal glands that are found underneath the eyelid where the upper and lower conjuctivae meet. Their ducts unite into a rather long sinus which open into the fornix conjunctiva. There are approximately forty Krause glands in the region of the upper eyelid, and around 6 to 8 in the region of the lower lid. The function of these glands are to produce tears which are secreted onto the surface of the conjuctiva" [http://en.wikipedia.org/wiki/Krause's_glands] +synonym: "accessory lacrimal gland" BROAD [FMA:59056] +synonym: "conjunctival gland" BROAD [FMA:59056] +synonym: "Krause gland" EXACT [FMA:59056] +xref: FMA:59056 +xref: http://linkedlifedata.com/resource/umls/id/C1306642 +xref: http://www.snomedbrowser.com/Codes/Details/23492003 +xref: http://www.snomedbrowser.com/Codes/Details/278359007 +xref: Krause's:glands +xref: NCIT:C32678 +xref: UMLS:C1306642 {source="ncithesaurus:Gland_of_Krause"} +is_a: UBERON:0013226 ! accessory lacrimal gland +relationship: part_of UBERON:0001351 {source="ncithesaurus"} ! lacrimal sac + +[Term] +id: UBERON:0011187 +name: ventral tubercle of humerus +def: "The greater tubercle of the humerus is situated lateral to the head of the humerus and posteriolateral to the lesser tubercle. Its upper surface is rounded and marked by three flat impressions. the highest of these gives ('superior facet') insertion to the Supraspinatus the middle ('middle facet') to the Infraspinatus. the lowest one ('inferior facet'), and the body of the bone for about 2.5 cm. below it, to the Teres minor. The lateral surface of the greater tubercle is convex, rough, and continuous with the lateral surface of the body. Between the greater tubercle and the lesser tubercle is the intertubercular sulcus (bicipital groove)." [http://en.wikipedia.org/wiki/Greater_tubercle] +synonym: "greater tubercle" EXACT [FMA:23390] +synonym: "greater tubercle of humerus" EXACT [FMA:23390] +synonym: "greater tubercle of the humerus" RELATED [http://en.wikipedia.org/wiki/Greater_tubercle] +synonym: "greater tuberosity" RELATED [http://en.wikipedia.org/wiki/Greater_tubercle] +synonym: "greater tuberosity of humerus" EXACT [FMA:23390] +synonym: "tuberculum majus" EXACT LATIN [FMA:TA] +synonym: "tuberculum majus humeri" EXACT [http://en.wikipedia.org/wiki/Greater_tubercle] +xref: FMA:23390 +xref: Greater:tubercle +xref: http://linkedlifedata.com/resource/umls/id/C1512275 +xref: http://www.snomedbrowser.com/Codes/Details/181934009 +xref: NCIT:C32700 +xref: UMLS:C1512275 {source="ncithesaurus:Greater_Tuberosity"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005813 {source="FMA"} ! tubercle +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0004411 {source="FMA"} ! proximal epiphysis of humerus + +[Term] +id: UBERON:0011188 +name: lesser tubercle of humerus +def: "The lesser tubercle of the humerus, although smaller, is more prominent than the greater tubercle: it is situated in front, and is directed medially and anteriorly. Above and in front it presents an impression for the insertion of the tendon of the Subscapularis." [http://en.wikipedia.org/wiki/Lesser_tubercle] +synonym: "lesser tubercle" EXACT [FMA:23393] +synonym: "lesser tubercle of humerus" RELATED [http://en.wikipedia.org/wiki/Lesser_tubercle] +synonym: "lesser tubercle of the humerus" RELATED [http://en.wikipedia.org/wiki/Lesser_tubercle] +synonym: "lesser tuberosity of humerus" EXACT [FMA:23393] +synonym: "tuberculum minus" EXACT LATIN [FMA:TA] +xref: FMA:23393 +xref: http://linkedlifedata.com/resource/umls/id/C0223687 +xref: http://www.snomedbrowser.com/Codes/Details/181935005 +xref: Lesser:tubercle +xref: NCIT:C32983 +xref: UMLS:C0223687 {source="ncithesaurus:Lesser_Tuberosity"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005813 {source="FMA"} ! tubercle +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0004411 {source="FMA"} ! proximal epiphysis of humerus + +[Term] +id: UBERON:0011189 +name: lamina propria of large intestine +def: "A lamina propria that is part of a large intestine." [OBOL:automatic] +synonym: "lamina propria of mucosa of large intestine" EXACT [FMA:15654] +synonym: "large intestinal lamina propria" EXACT [] +synonym: "large intestine lamina propria" EXACT [FMA:15654] +xref: FMA:15654 +xref: http://linkedlifedata.com/resource/umls/id/C1708644 +xref: NCIT:C49298 +xref: UMLS:C1708644 {source="ncithesaurus:Large_Intestinal_Lamina_Propria"} +is_a: UBERON:0004780 ! gastrointestinal system lamina propria +intersection_of: UBERON:0000030 ! lamina propria +intersection_of: part_of UBERON:0000059 ! large intestine +relationship: part_of UBERON:0001207 {source="FMA"} ! mucosa of large intestine + +[Term] +id: UBERON:0011190 +name: lunule of nail +def: "A crescent-shaped whitish area of the bed of a fingernail or toenail. The lunula is the visible part of the nail matrix (i.e. the root of the nail)." [http://en.wikipedia.org/wiki/unula_(anatomy)] +synonym: "lunula" EXACT [] +synonym: "lunula unguis" EXACT LATIN [FMA:77858, FMA:TA] +synonym: "nail lunule" EXACT [FMA:77858] +xref: FMA:77858 +xref: http://linkedlifedata.com/resource/umls/id/C0221991 +xref: http://www.snomedbrowser.com/Codes/Details/300538005 +xref: NCIT:C33025 +xref: UMLS:C0221991 {source="ncithesaurus:Lunula"} +xref: unula:(anatomy) +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0013754 ! integumentary system layer +relationship: part_of UBERON:0001705 ! nail + +[Term] +id: UBERON:0011191 +name: ophthalmic vein +def: "Ophthalmic veins are veins which drain the eye. More specifically, they can refer to: Superior ophthalmic vein Inferior ophthalmic vein" [http://en.wikipedia.org/wiki/Ophthalmic_veins] +synonym: "opthalmic vein" EXACT [EHDAA2:0004113] +synonym: "vena ophthalmica" RELATED [http://en.wikipedia.org/wiki/Ophthalmic_veins] +xref: EHDAA2:0004113 +xref: EMAPA:19313 +xref: Ophthalmic:veins +xref: XAO:0004169 +is_a: UBERON:0009141 {source="EHDAA2-modified"} ! craniocervical region vein + +[Term] +id: UBERON:0011192 +name: superior ophthalmic vein +def: "The superior ophthalmic vein begins at the inner angle of the orbit in a vein named the nasofrontal which communicates anteriorly with the angular vein; it pursues the same course as the ophthalmic artery, and receives tributaries corresponding to the branches of that vessel. Forming a short single trunk, it passes between the two heads of the Rectus lateralis and through the medial part of the superior orbital fissure, and ends in the cavernous sinus. The ethmoidal veins drain into the superior ophthalmic vein. Vorticose veins also drain into the superior ophthalmic vein." [http://en.wikipedia.org/wiki/Superior_ophthalmic_vein] +synonym: "anterior ethmoidal vein" RELATED [http://en.wikipedia.org/wiki/Superior_ophthalmic_vein] +synonym: "posterior ethmoidal vein" RELATED [http://en.wikipedia.org/wiki/Superior_ophthalmic_vein] +synonym: "superior ophthalmic" RELATED [http://en.wikipedia.org/wiki/Superior_ophthalmic_vein] +synonym: "superior opthalmic vein" RELATED [] +xref: FMA:51246 +xref: http://en.wikipedia.org/wiki/Superior_ophthalmic_vein +xref: http://www.snomedbrowser.com/Codes/Details/149481004 +is_a: UBERON:0011191 ! ophthalmic vein + +[Term] +id: UBERON:0011193 +name: inferior ophthalmic vein +def: "The inferior ophthalmic vein begins in a venous net-work at the forepart of the floor and medial wall of the orbit; it receives some vorticose veins and other veins from the Rectus inferior, Obliquus inferior, lacrimal sac and eyelids, runs backward in the lower part of the orbit and divides into two branches. One of these passes through the inferior orbital fissure and joins the pterygoid venous plexus, while the other enters the cranium through the superior orbital fissure and ends in the cavernous sinus, either by a separate opening, or more frequently in common with the superior ophthalmic vein." [http://en.wikipedia.org/wiki/Inferior_ophthalmic_vein] +synonym: "inferior ophthalmic" RELATED [http://en.wikipedia.org/wiki/Inferior_ophthalmic_vein] +synonym: "inferior opthalmic vein" RELATED [] +xref: FMA:51247 +xref: http://en.wikipedia.org/wiki/Inferior_ophthalmic_vein +xref: http://www.snomedbrowser.com/Codes/Details/149986001 +is_a: UBERON:0011191 ! ophthalmic vein + +[Term] +id: UBERON:0011194 +name: ophthalmic plexus +def: "An autonomic plexus, entering the orbit in company with the ophthalmic artery, derived from the internal carotid plexus." [http://www.encyclo.co.uk/define/ophthalmic%20plexus] +synonym: "ophthalmic nerve plexus" EXACT [] +synonym: "ophthalmic plexus" EXACT [MA:0002185] +synonym: "opthalmic plexus" EXACT [] +synonym: "plexus ophthalmicus" EXACT LATIN [] +xref: EMAPA:37704 {source="MA:th"} +xref: FMA:312377 +xref: http://linkedlifedata.com/resource/umls/id/C1709326 +xref: MA:0002185 +xref: NCIT:C53057 +xref: UMLS:C1709326 {source="ncithesaurus:Ophthalmic_Plexus"} +is_a: UBERON:0001810 {source="ncithesaurus"} ! nerve plexus + +[Term] +id: UBERON:0011195 +name: inferior parathyroid epithelium +def: "An epithelium that is part of a inferior parathyroid gland." [OBOL:automatic] +synonym: "parathyroid III epithelium" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: EHDAA2:0000824 +xref: EHDAA:3868 +is_a: UBERON:0011197 ! parathyroid epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0006755 ! inferior parathyroid gland +relationship: develops_from UBERON:0010025 {source="EHDAA2"} ! dorsal part of pharyngeal pouch 3 +relationship: part_of UBERON:0006755 ! inferior parathyroid gland + +[Term] +id: UBERON:0011196 +name: superior parathyroid epithelium +def: "An epithelium that is part of a superior parathyroid gland." [OBOL:automatic] +xref: EHDAA2:0001957 +xref: EHDAA:3874 +is_a: UBERON:0011197 ! parathyroid epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0006749 ! superior parathyroid gland +relationship: develops_from UBERON:0007125 {source="EHDAA2"} ! pharyngeal pouch 4 +relationship: part_of UBERON:0006749 ! superior parathyroid gland + +[Term] +id: UBERON:0011197 +name: parathyroid epithelium +def: "An epithelium that is part of a parathyroid gland." [OBOL:automatic] +xref: CALOHA:TS-2141 +xref: http://linkedlifedata.com/resource/umls/id/C1709466 +xref: NCIT:C48258 +xref: UMLS:C1709466 {source="ncithesaurus:Parathyroid_Gland_Epithelial_Tissue"} +is_a: UBERON:0000486 {source="EHDAA2-abduced"} ! multilaminar epithelium +is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0006799 ! glandular epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001132 ! parathyroid gland +relationship: develops_from UBERON:0004117 ! pharyngeal pouch +relationship: part_of UBERON:0001132 ! parathyroid gland + +[Term] +id: UBERON:0011198 +name: muscle layer of large intestine +def: "A muscle layer that is part of a large intestine." [OBOL:automatic] +synonym: "muscular coat of large intestine" EXACT [FMA:14971] +synonym: "muscular layer of large intestine" EXACT [FMA:14971] +synonym: "muscularis externa of large intestine" EXACT [FMA:14971] +synonym: "tunica muscularis intestini crassi" EXACT LATIN [FMA:TA] +xref: FMA:14971 +xref: http://linkedlifedata.com/resource/umls/id/C0734205 +xref: NCIT:C32927 +xref: UMLS:C0734205 {source="ncithesaurus:Large_Intestinal_Muscular_Coat"} +is_a: UBERON:0012367 ! muscle layer of intestine +intersection_of: UBERON:0006660 ! muscular coat +intersection_of: part_of UBERON:0000059 ! large intestine +relationship: part_of UBERON:0001169 {source="FMA"} ! wall of large intestine + +[Term] +id: UBERON:0011199 +name: prostatic utricle +def: "A small indentation located in the prostatic urethra, at the apex of the urethral crest, on the seminal colliculus (verumontanum), laterally flanked by openings of the ejaculatory ducts." [http://en.wikipedia.org/wiki/Prostatic_utricle] +synonym: "sinus pocularis" EXACT [FMA:19702] +synonym: "uterus masculinus" EXACT [FMA:19702] +synonym: "uterus masculinus" RELATED LATIN [http://en.wikipedia.org/wiki/Prostatic_utricle] +synonym: "utricle of prostate" EXACT [FMA:19702] +synonym: "utriculus of prostate" EXACT [FMA:19702] +synonym: "utriculus prostaticus" RELATED LATIN [http://en.wikipedia.org/wiki/Prostatic_utricle] +synonym: "vagina masculina" EXACT LATIN [FMA:19702, http://en.wikipedia.org/wiki/Prostatic] +synonym: "vagina masculina" RELATED [http://en.wikipedia.org/wiki/Prostatic_utricle] +synonym: "vesicula prostatica" RELATED LATIN [http://en.wikipedia.org/wiki/Prostatic_utricle] +xref: FMA:19702 +xref: http://linkedlifedata.com/resource/umls/id/C0227736 +xref: http://www.snomedbrowser.com/Codes/Details/197909004 +xref: NCIT:C63862 +xref: Prostatic:utricle +xref: UMLS:C0227736 {source="ncithesaurus:Prostatic_Utricle"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0001335 {source="FMA"} ! prostatic urethra + +[Term] +id: UBERON:0011200 +name: sacrococcygeal symphysis +def: "The sacrococcygeal symphysis (sacrococcygeal articulation, articulation of the sacrum and coccyx) is an amphiarthrodial joint, formed between the oval surface at the apex of the sacrum, and the base of the coccyx. It is a slightly moveable joint which is frequently, partially or completely, obliterated in old age, homologous with the joints between the bodies of the vertebrae." [http://en.wikipedia.org/wiki/Sacrococcygeal_symphysis] +synonym: "sacrococcygeal joint" EXACT [FMA:16210] +synonym: "sacrococcygeal joint" RELATED [http://en.wikipedia.org/wiki/Sacrococcygeal_symphysis] +xref: FMA:16210 +xref: http://linkedlifedata.com/resource/umls/id/C0224593 +xref: NCIT:C33506 +xref: Sacrococcygeal:symphysis +xref: UMLS:C0224593 {source="ncithesaurus:Sacrococcygeal_Joint"} +is_a: UBERON:0001468 {source="FMA"} ! intervertebral joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001350 ! coccyx +intersection_of: connects UBERON:0003690 ! fused sacrum +relationship: connects UBERON:0001350 ! coccyx +relationship: connects UBERON:0003690 ! fused sacrum + +[Term] +id: UBERON:0011201 +name: muscle layer of small intestine +def: "A muscle layer that is part of a small intestine." [OBOL:automatic] +synonym: "muscular coat of small intestine" EXACT [FMA:14932] +synonym: "muscular layer of small intestine" EXACT [FMA:14932] +synonym: "muscularis externa of small intestine" EXACT [FMA:14932] +synonym: "small intestine muscularis propria" EXACT [FMA:14932] +synonym: "tunica muscularis (intestinum tenue)" EXACT [FMA:14932] +synonym: "tunica muscularis intestini tenuis" EXACT LATIN [FMA:TA] +xref: FMA:14932 +xref: http://linkedlifedata.com/resource/umls/id/C0227269 +xref: http://www.snomedbrowser.com/Codes/Details/362145004 +xref: NCIT:C33569 +xref: UMLS:C0227269 {source="ncithesaurus:Small_Intestinal_Muscular_Coat"} +is_a: UBERON:0012367 ! muscle layer of intestine +intersection_of: UBERON:0006660 ! muscular coat +intersection_of: part_of UBERON:0002108 ! small intestine +relationship: part_of UBERON:0001168 {source="FMA"} ! wall of small intestine + +[Term] +id: UBERON:0011202 +name: urachus epithelium +def: "An epithelium that is part of a urachus." [OBOL:automatic] +xref: EHDAA2:0004725 +xref: http://linkedlifedata.com/resource/umls/id/C1711256 +xref: NCIT:C54210 +xref: UMLS:C1711256 {source="ncithesaurus:Urachal_Epithelium"} +is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube +is_a: UBERON:0006555 ! excretory tube +is_a: UBERON:0012275 ! meso-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002068 ! urachus +relationship: part_of UBERON:0002068 ! urachus + +[Term] +id: UBERON:0011203 +name: urachus mesenchyme +def: "Mesenchyme that is part of a developing urachus." [OBOL:automatic] +xref: EHDAA2:0004726 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0002068 ! urachus +relationship: part_of UBERON:0002068 ! urachus + +[Term] +id: UBERON:0011204 +name: rectovesical pouch +def: "Between the rectum and the bladder the peritoneal cavity forms, in the male, a pouch, the rectovesical excavation (or rectovesical pouch), the bottom of which is slightly below the level of the upper ends of the vesiculae seminalesbi. e. , about 7.5 cm. from the orifice of the anus. its lowest part membranous partition called Rectoprostatic fascia. The corresponding structure in women is the rectouterine pouch." [http://en.wikipedia.org/wiki/Recto-vesical_pouch] +synonym: "excavatio rectovesicalis" EXACT LATIN [FMA:TA] +synonym: "excavatio rectovesicalis" RELATED [http://en.wikipedia.org/wiki/Recto-vesical_pouch] +synonym: "recto-vesical pouch" EXACT [FMA:14727] +synonym: "rectovesical" RELATED [http://en.wikipedia.org/wiki/Recto-vesical_pouch] +synonym: "rectovesical excavation" RELATED [http://en.wikipedia.org/wiki/Recto-vesical_pouch] +synonym: "rectovesical pouch" RELATED [http://en.wikipedia.org/wiki/Recto-vesical_pouch] +synonym: "rectovesical space" EXACT [FMA:14727] +synonym: "retrovesical excavation" RELATED [http://en.wikipedia.org/wiki/Recto-vesical_pouch] +xref: FMA:14727 +xref: http://linkedlifedata.com/resource/umls/id/C0230301 +xref: http://www.snomedbrowser.com/Codes/Details/261416006 +xref: NCIT:C33448 +xref: Recto-vesical:pouch +xref: UMLS:C0230301 {source="ncithesaurus:Recto-Vesical_Pouch"} +is_a: UBERON:0002553 ! anatomical cavity +relationship: part_of UBERON:0002358 ! peritoneum + +[Term] +id: UBERON:0011205 +name: carpometacarpus +def: "The carpometacarpus is the fusion of the carpal and metacarpal bone, essentially a single fused bone between the wrist and the knuckles. It is a smallish bone in most birds, generally flattened and with a large hole in the middle. In flightless birds, however, its shape may be slightly different, or it might be absent entirely." [http://en.wikipedia.org/wiki/Carpometacarpus] +synonym: "carpometacarpus bone" EXACT [] +xref: http://en.wikipedia.org/wiki/Carpometacarpus +is_a: UBERON:0005897 ! manus bone +relationship: has_fused_element UBERON:0001435 ! carpal bone +relationship: has_fused_element UBERON:0002374 ! metacarpal bone + +[Term] +id: UBERON:0011206 +name: hinge joint +def: "A joint that allows motion around an axis." [BTO:0004707, http://en.wikipedia.org/wiki/Hinge_joint] +synonym: "ginglymus" RELATED [BTO:0004707] +xref: BTO:0004707 +xref: FMA:75296 +xref: galen:HingeJoint +xref: Hinge:joint +xref: http://www.snomedbrowser.com/Codes/Details/335391000 +is_a: UBERON:0000982 {source="BTO"} ! skeletal joint + +[Term] +id: UBERON:0011207 +name: iliocostalis lumborum +def: "The iliocostalis lumborum (iliocostalis muscle; sacrolumbalis muscle) is inserted, by six or seven flattened tendons, into the inferior borders of the angles of the lower six or seven ribs." [http://en.wikipedia.org/wiki/Iliocostalis#Iliocostalis_lumborum] +synonym: "sacrolumbalis" RELATED [http://en.wikipedia.org/wiki/Iliocostalis] +synonym: "sacrolumbalis muscle" RELATED [http://en.wikipedia.org/wiki/Iliocostalis] +xref: FMA:22702 +xref: http://www.snomedbrowser.com/Codes/Details/244855009 +xref: Iliocostalis_lumborum +is_a: UBERON:0002251 {source="FMA"} ! iliocostalis muscle + +[Term] +id: UBERON:0011208 +name: medial migration pathway NC-derived mesenchyme +synonym: "medial migration pathway" RELATED [] +synonym: "medial migration pathway mesenchyme" EXACT [ZFA:0000786] +xref: EHDAA2:0001075 +xref: EHDAA:1747 +xref: EMAPA:16597 +xref: TAO:0000786 +xref: ZFA:0000786 +is_a: UBERON:0011210 ! migration pathway NC-derived mesenchyme +disjoint_from: UBERON:0011209 {source="lexical"} ! lateral migration pathway NC-derived mesenchyme + +[Term] +id: UBERON:0011209 +name: lateral migration pathway NC-derived mesenchyme +synonym: "lateral migration pathway" RELATED [] +synonym: "lateral migration pathway mesenchyme" EXACT [ZFA:0000992] +xref: EHDAA2:0000915 +xref: EHDAA:1745 +xref: EMAPA:16596 +xref: TAO:0000992 +xref: ZFA:0000992 +is_a: UBERON:0011210 ! migration pathway NC-derived mesenchyme + +[Term] +id: UBERON:0011210 +name: migration pathway NC-derived mesenchyme +synonym: "migration pathway mesenchyme" EXACT [] +synonym: "NC migration pathway" RELATED [] +is_a: UBERON:0007214 ! mesenchyme derived from trunk neural crest +is_a: UBERON:0007530 {source="EHDAA2-abduced"} ! migrating mesenchyme population + +[Term] +id: UBERON:0011213 +name: root of vagus nerve +def: "A root of cranial nerve that is part of a vagus nerve." [OBOL:automatic] +synonym: "rootlet of vagus nerve" EXACT [FMA:6213] +synonym: "rX" BROAD [ZFA:0007011] +synonym: "vagal root" EXACT [ZFA:0007011] +synonym: "vagus nerve root" EXACT [BIRNLEX:1456] +synonym: "vagus neural rootlet" RELATED [FMA:6213] +synonym: "vagus root" EXACT [ZFA:0007011] +xref: BIRNLEX:1456 +xref: DHBA:12888 +xref: DMBA:17748 +xref: FMA:6213 +xref: ZFA:0007011 +is_a: UBERON:0002211 ! nerve root +intersection_of: UBERON:0002211 ! nerve root +intersection_of: extends_fibers_into UBERON:0001759 ! vagus nerve +relationship: extends_fibers_into UBERON:0001759 ! vagus nerve + +[Term] +id: UBERON:0011214 +name: nucleus of midbrain tectum +def: "A neural nucleus that is part of a midbrain tectum." [OBOL:automatic] +synonym: "nucleus of tectum" EXACT [FMA:258766] +synonym: "tectal nucleus" BROAD [] +xref: FMA:258766 +is_a: UBERON:0009661 ! midbrain nucleus +intersection_of: UBERON:0000125 ! neural nucleus +intersection_of: part_of UBERON:0002314 ! midbrain tectum +relationship: part_of UBERON:0002314 ! midbrain tectum + +[Term] +id: UBERON:0011215 +name: central nervous system cell part cluster +def: "A multi cell part structure that is part of a central nervous system." [OBOL:automatic] +subset: upper_level +synonym: "cell part cluster of neuraxis" EXACT [FMA:83143] +synonym: "neuraxis layer" EXACT [FMA:83143] +xref: FMA:83143 +is_a: UBERON:0005162 ! multi cell part structure +intersection_of: UBERON:0005162 ! multi cell part structure +intersection_of: part_of UBERON:0001017 ! central nervous system +relationship: part_of UBERON:0001017 ! central nervous system + +[Term] +id: UBERON:0011216 +name: organ system subdivision +def: "A subdivision of an anatomical system." [http://orcid.org/0000-0002-6601-2165] +subset: upper_level +xref: FBbt:00007330 +xref: FMA:67509 +xref: http://www.snomedbrowser.com/Codes/Details/91690000 +is_a: UBERON:0010000 {source="FBbt"} ! multicellular anatomical structure +disjoint_from: UBERON:0014732 {source="FBbt"} ! compound cell cluster organ +relationship: part_of UBERON:0000467 ! anatomical system + +[Term] +id: UBERON:0011217 +name: serratus dorsalis muscle +synonym: "serratus dorsalis" EXACT [] +synonym: "serratus posterior" EXACT [FMA:13400] +synonym: "serratus posterior muscle" EXACT [FMA:13400] +xref: EMAPA:36269 +xref: FMA:13400 +xref: http://www.snomedbrowser.com/Codes/Details/244934006 +is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column +relationship: has_muscle_insertion UBERON:0002228 {source="dbpedia-abduced"} ! rib +relationship: innervated_by UBERON:0003727 {source="dbpedia-abduced"} ! intercostal nerve + +[Term] +id: UBERON:0011218 +name: spinalis cervicis muscle +def: "Origin: spinous processes of seventh cervical and sometimes two upper thoracic vertebrae; insertion: spinous processes of axis and sometimes of second to fourth cervical vertebrae; innervation: branches of cervical; action: extends vertebral column." [BTO:0002623] +comment: The Spinalis cervicis (Spinalis colli) is an inconstant muscle, which arises from the lower part of the ligamentum nuchæ, the spinous process of the seventh cervical, and sometimes from the spinous processes of the first and second thoracic vertebrae, and is inserted into the spinosus process of the axis, and occasionally into the spinous processes of the two vertebrae below it. [Wikipedia:Spinalis#Spinalis_cervivis] +synonym: "musculus spinalis cervicis" RELATED [BTO:0002623] +synonym: "spinal muscle of neck" EXACT [BTO:0002623] +xref: BTO:0002623 +xref: FMA:22770 +xref: http://www.snomedbrowser.com/Codes/Details/244864004 +is_a: UBERON:0011013 {source="BTO"} ! spinalis muscle +relationship: has_muscle_origin UBERON:0000351 {notes="also spinous process of C7", source="dbpedia"} ! nuchal ligament + +[Term] +id: UBERON:0011219 +name: longissimus lumborum muscle +def: "Lumbar muscle that extends and rotates the vertebral column." [BTO:0001925] +synonym: "longissimus lumborum" EXACT [MA:0002338] +synonym: "musculus longissimus lumborum" RELATED [BTO:0001925] +xref: BTO:0001925 +xref: EMAPA:37652 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1708736 +xref: MA:0002338 +xref: NCIT:C52954 +xref: UMLS:C1708736 {source="ncithesaurus:Longissimus_Lumborum"} +is_a: UBERON:0000392 ! longissimus muscle + +[Term] +id: UBERON:0011220 +name: mastoid process of temporal bone +def: "The mastoid process is a conical prominence projecting from the undersurface of the mastoid portion of the temporal bone. It is located just behind the external acoustic meatus, and lateral to the styloid process. Its size and form vary somewhat; it is larger in the male than in the female. This process serves for the attachment of the posterior belly of the digastric, sternocleidomastoid, splenius capitis, and longissimus capitis muscles. The word is derived from the Greek 'masto-', alluding to its resemblance to the breast." [http://en.wikipedia.org/wiki/Mastoid_process] +subset: pheno_slim +synonym: "mastoid" RELATED [http://en.wikipedia.org/wiki/Mastoid_process] +synonym: "mastoid process" EXACT [FMA:52872] +synonym: "mastoid process of skull" EXACT [] +synonym: "processus mastoideus ossis temporalis" RELATED [http://en.wikipedia.org/wiki/Mastoid_process] +xref: FMA:52872 +xref: http://linkedlifedata.com/resource/umls/id/C0446908 +xref: http://www.snomedbrowser.com/Codes/Details/304336002 +xref: Mastoid:process +xref: NCIT:C12503 +xref: UMLS:C0446908 {source="ncithesaurus:Mastoid_Process"} +is_a: UBERON:0000075 {source="ncithesaurus"} ! subdivision of skeletal system +relationship: part_of UBERON:0001678 {source="ncithesaurus"} ! temporal bone + +[Term] +id: UBERON:0011221 +name: ora serrata of retina +def: "The ora serrata is the serrated junction between the retina and the ciliary body. This junction marks the transition from the simple non-photosensitive area of the retina to the complex, multi-layered photosensitive region. In animals in which the region does not have a serrated appearance, it is called the ora ciliaris retinae." [http://en.wikipedia.org/wiki/Ora_serrata] +synonym: "ora ciliaris retina" RELATED [http://en.wikipedia.org/wiki/Ora_serrata] +synonym: "ora ciliaris retinae" RELATED [http://en.wikipedia.org/wiki/Ora_serrata] +synonym: "ora serrata" EXACT [FMA:58600] +synonym: "ora serrata retinae" EXACT LATIN [FMA:TA] +xref: FMA:58600 +xref: http://www.snomedbrowser.com/Codes/Details/280612002 +xref: Ora:serrata +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0007651 ! anatomical junction +relationship: connects UBERON:0000966 ! retina +relationship: connects UBERON:0001775 ! ciliary body +relationship: part_of UBERON:0001766 ! anterior chamber of eyeball + +[Term] +id: UBERON:0011222 +name: intra-ocular muscle +synonym: "intrinsic muscle of eyeball" EXACT [] +synonym: "intrinsic ocular muscle" EXACT [EMAPA:18808] +xref: AAO:0010038 +xref: EMAPA:18808 +xref: FMA:49150 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004277 ! eye muscle +relationship: part_of UBERON:0003386 {source="EMAPA"} ! smooth muscle of eye + +[Term] +id: UBERON:0011233 +name: synovial membrane of synovial tendon sheath +def: "Synovial sac which surrounds parts of one or more tendons. Examples: synovial tendon sheath of manual digit 2, radial bursa." [FMA:45087, http://en.wikipedia.org/wiki/Synovial_sheath] +comment: Alternate def: A synovial sheath is a layer of a tendon sheath containing tendons in the hand and foot. They lie internal to the fibrous tendon sheaths. An example is the common synovial sheath for the flexor tendons. [Wikipedia:Synovial_sheath] +synonym: "synovium" BROAD [BTO:0001823] +xref: BTO:0001823 +xref: FMA:40878 +xref: Synovial:sheath +is_a: UBERON:0007616 ! layer of synovial tissue +intersection_of: UBERON:0007616 ! layer of synovial tissue +intersection_of: bounding_layer_of UBERON:0000304 ! tendon sheath +relationship: bounding_layer_of UBERON:0000304 ! tendon sheath +relationship: part_of UBERON:0000304 ! tendon sheath + +[Term] +id: UBERON:0011234 +name: fibrous membrane of synovial tendon sheath +xref: FMA:40877 +is_a: UBERON:0004923 ! organ component layer +intersection_of: UBERON:0004923 ! organ component layer +intersection_of: bounding_layer_of UBERON:0000304 ! tendon sheath +intersection_of: composed_primarily_of UBERON:0011824 ! fibrous connective tissue +relationship: bounding_layer_of UBERON:0000304 ! tendon sheath +relationship: composed_primarily_of UBERON:0011824 ! fibrous connective tissue +relationship: part_of UBERON:0000304 ! tendon sheath + +[Term] +id: UBERON:0011236 +name: deep fascia +def: "Deep fascia (or 'investing fascia') is a layer of fascia which can surround individual muscles, and divide groups of muscles into compartments. This is the dense fibrous connective tissue that interpenetrates and surrounds the muscles, bones, nerves and blood vessels of the body. It provides connection and communication in the form of aponeuroses, ligaments, tendons, retinacula, joint capsules, and septa. The deep fasciae envelop all bone; cartilage, and blood vessels and become specialized in muscles and nerves. The high density of collagen fibers is what gives the deep fascia its strength and integrity. The amount of elastin fiber determines how much extensibility and resilience it will have." [http://en.wikipedia.org/wiki/Deep_fascia] +synonym: "deep fasciae" RELATED PLURAL [http://en.wikipedia.org/wiki/Deep_fascia] +synonym: "deep investing fascia" NARROW [http://en.wikipedia.org/wiki/Deep_fascia] +synonym: "fascia of muscles" RELATED [http://en.wikipedia.org/wiki/Deep_fascia] +synonym: "fascia profunda" EXACT LATIN [http://en.wikipedia.org/wiki/Deep_fascia] +synonym: "investing fascia" RELATED [http://en.wikipedia.org/wiki/Deep_fascia] +xref: Deep:fascia +xref: FMA:27935 +xref: http://linkedlifedata.com/resource/umls/id/C1511746 +xref: NCIT:C32435 +xref: UMLS:C1511746 {source="ncithesaurus:Deep_Fascia"} +is_a: UBERON:0008982 ! fascia + +[Term] +id: UBERON:0011237 +name: visceral fascia +def: "Fascia that suspends a visceral organ." [http://orcid.org/0000-0002-6601-2165] +comment: Visceral fascia suspends the organs within their cavities and wraps them in layers of connective tissue membranes. Each of the organs is covered in a double layer of fascia; these layers are separated by a thin serous membrane. The outermost wall of the organ is known as the parietal layer The skin of the organ is known as the visceral layer. The organs have specialized names for their visceral fasciae. In the brain, they are known as meninges; in the heart they are known as pericardia; in the lungs, they are known as pleura; and in the abdomen, they are known as peritonea. [Wikipedia:Visceral_fascia] +synonym: "parietal fascia" RELATED [http://en.wikipedia.org/wiki/Visceral_fascia] +xref: FMA:76754 +xref: Visceral:fascia +is_a: UBERON:0008982 ! fascia + +[Term] +id: UBERON:0011238 +name: mesethmoid bone +def: "An ossified mesethmoid element" [http://orcid.org/0000-0002-6601-2165] +synonym: "dermethmocïde@fr" EXACT [TAO:0000323] +synonym: "ethmoid" RELATED [TAO:0000323] +synonym: "mésethmocïde@fr" EXACT [TAO:0000323] +xref: TAO:0000323 +xref: ZFA:0000323 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010892 ! mesethmoid element +is_a: UBERON:0011164 ! neurocranium bone +intersection_of: UBERON:0010892 ! mesethmoid element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: has_developmental_contribution_from UBERON:0005945 {source="ZFA"} ! neurocranial trabecula +relationship: has_developmental_contribution_from UBERON:0011242 {source="ZFA"} ! ethmoid cartilage + +[Term] +id: UBERON:0011241 +name: ethmoid region +def: "The most anterior region of the braincase. Provides structural support for peripheral olfactory organ." [http://palaeos.com/vertebrates/bones/braincase/ethmoid.html, UBERONREF:0000007] +xref: AAO:0000986 +is_a: UBERON:0034921 ! multi organ part structure +relationship: has_developmental_contribution_from UBERON:0005945 ! neurocranial trabecula +relationship: part_of UBERON:0003112 ! olfactory region + +[Term] +id: UBERON:0011242 +name: ethmoid cartilage +def: "Region between capsules formed by anterior tips of neurocranial trabeculae." [ISBN:0073040584] +subset: efo_slim +synonym: "ethmoid cartilages" EXACT PLURAL [TAO:0001405] +synonym: "ethmoid plate" RELATED [TAO:0001405] +xref: AAO:0010134 +xref: EFO:0003685 +xref: TAO:0001405 +xref: ZFA:0001405 +is_a: UBERON:0003932 {source="TAO"} ! cartilage element of chondrocranium +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0005945 {source="ISBN:0073040584"} ! neurocranial trabecula +relationship: part_of UBERON:0002517 {source="FMA"} ! basicranium +relationship: part_of UBERON:0011241 {source="AAO"} ! ethmoid region + +[Term] +id: UBERON:0011244 +name: perpendicular plate of ethmoid +def: "The perpendicular plate of the ethmoid bone (vertical plate) is a thin, flattened lamina, polygonal in form, which descends from the under surface of the cribriform plate, and assists in forming the septum of the nose; it is generally deflected a little to one or other side. The anterior border articulates with the spine of the frontal bone and the crest of the nasal bones. The posterior border articulates by its upper half with the sphenoidal crest, by its lower with the vomer. The inferior border is thicker than the posterior, and serves for the attachment of the septal cartilage of the nose. The surfaces of the plate are smooth, except above, where numerous grooves and canals are seen; these lead from the medial foramina on the cribriform plate and lodge filaments of the olfactory nerves." [http://en.wikipedia.org/wiki/Perpendicular_plate_of_ethmoid_bone] +synonym: "lamina perpendicularis (os ethmoidale)" EXACT [FMA:52891] +synonym: "lamina perpendicularis of ethmoid bone" EXACT [FMA:52891] +synonym: "lamina perpendicularis ossis ethmoidalis" RELATED [http://en.wikipedia.org/wiki/Perpendicular_plate_of_ethmoid_bone] +synonym: "perpendicular plate" BROAD [EMAPA:25114] +synonym: "perpendicular plate of the ethmoid bone" RELATED [http://en.wikipedia.org/wiki/Perpendicular_plate_of_ethmoid_bone] +synonym: "vertical plate of the ethmoid bone" RELATED [http://en.wikipedia.org/wiki/Perpendicular_plate_of_ethmoid_bone] +xref: EMAPA:25114 +xref: FMA:52891 +xref: http://en.wikipedia.org/wiki/Perpendicular_plate_of_ethmoid_bone +xref: http://www.snomedbrowser.com/Codes/Details/369005006 +xref: MA:0003126 +is_a: UBERON:0005913 {source="cjm"} ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0001679 {source="FMA"} ! ethmoid bone + +[Term] +id: UBERON:0011245 +name: infra-orbital canal of maxilla +def: "A canal through the maxilla that is connects the infra-orbital groove and foramen and is the conduit for the passage of the infraorbital nerve and artery." [UBERON:cjm] +synonym: "canalis infra-orbitalis" EXACT LATIN [FMA:59048] +synonym: "canalis infraorbitalis" EXACT LATIN [FMA:59048] +synonym: "infra-orbital canal" BROAD [FMA:59048] +synonym: "infraorbital canal" BROAD [http://en.wikipedia.org/wiki/Infraorbital_canal] +xref: FMA:59048 +xref: Infraorbital:canal +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0013685 ! foramen of skull +intersection_of: UBERON:0013685 ! foramen of skull +intersection_of: conduit_for UBERON:0004646 ! infraorbital artery +intersection_of: conduit_for UBERON:0018408 ! infra-orbital nerve +intersection_of: continuous_with UBERON:0018407 ! infra-orbital foramen of maxilla +intersection_of: continuous_with UBERON:0018409 ! infra-orbital groove of maxilla +intersection_of: part_of UBERON:0002397 ! maxilla +disjoint_from: UBERON:0018407 ! infra-orbital foramen of maxilla +disjoint_from: UBERON:0018409 ! infra-orbital groove of maxilla +relationship: conduit_for UBERON:0004646 ! infraorbital artery +relationship: conduit_for UBERON:0018408 ! infra-orbital nerve +relationship: continuous_with UBERON:0018407 ! infra-orbital foramen of maxilla +relationship: continuous_with UBERON:0018409 ! infra-orbital groove of maxilla +relationship: part_of UBERON:0002397 ! maxilla + +[Term] +id: UBERON:0011246 +name: procoracoid bone +def: "." [https://github.com/obophenotype/uberon/issues/119] +synonym: "anterior coracoid" RELATED [ISBN:0073040584] +synonym: "anterior coracoid bone" RELATED [ISBN:0073040584] +synonym: "precoracoid" RELATED [] +synonym: "precoracoid bone" RELATED [ISBN:0073040584] +synonym: "procoracoid" RELATED [] +synonym: "procoracoid process" NARROW [] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0011248 ! procoracoid element +intersection_of: UBERON:0011248 ! procoracoid element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +property_value: dc-contributor https://github.com/alex-dececchi +relationship: develops_from UBERON:0011247 ! procoracoid cartilage + +[Term] +id: UBERON:0011247 +name: procoracoid cartilage +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0011248 ! procoracoid element +intersection_of: UBERON:0011248 ! procoracoid element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0011248 +name: procoracoid element +def: "Endochondral element of pectoral girdle, positioned posterior to the clavicle and anterior to the coracoid." [https://github.com/obophenotype/uberon/issues/104] +synonym: "anterior coracoid" RELATED [ISBN:0073040584] +synonym: "precoracoid" RELATED [ISBN:0073040584] +synonym: "precoracoid" RELATED [AAO:0000760] +synonym: "procoracoid" EXACT [AAO:0000760] +xref: AAO:0000760 +is_a: UBERON:0004765 ! skeletal element +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +relationship: part_of UBERON:0007831 ! pectoral girdle skeleton + +[Term] +id: UBERON:0011249 +name: appendicular skeletal system +def: "Subdivision of the skeletal system which consists of the appendicular skeleton plus associated joints." [https://orcid.org/0000-0002-6601-2165] +xref: FMA:7484 +xref: VHOG:0001666 +xref: VSAO:0000306 +is_a: UBERON:0000075 ! subdivision of skeletal system +relationship: has_part UBERON:0000982 ! skeletal joint +relationship: has_part UBERON:0002091 ! appendicular skeleton + +[Term] +id: UBERON:0011250 +name: autopod bone +def: "A bone that is part of a autopod region. Note that this incudes the carpal and tarsal bones." [https://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0002428 ! limb bone +is_a: UBERON:0015063 ! autopod endochondral element +intersection_of: UBERON:0015063 ! autopod endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015064 ! autopod cartilage + +[Term] +id: UBERON:0011251 +name: levator claviculae muscle +def: "A skeletal muscle in the posterior triangle of the neck. It originates on the transverse processes of the upper cervical vertebrae and is inserted in the lateral half of the clavicle" [http://en.wikipedia.org/wiki/Levator_claviculae_muscle] +synonym: "cleidocervicalis" EXACT [http://en.wikipedia.org/wiki/Levator_claviculae_muscle] +synonym: "cleidocervicalis muscle" EXACT [http://en.wikipedia.org/wiki/Levator_claviculae_muscle] +synonym: "levator claviculae" EXACT [http://en.wikipedia.org/wiki/Levator_claviculae_muscle] +synonym: "musculus levator claviculae" EXACT LATIN [http://en.wikipedia.org/wiki/Levator_claviculae_muscle] +synonym: "omocervicalis" EXACT [http://en.wikipedia.org/wiki/Levator_claviculae_muscle] +synonym: "pars cervicalis" RELATED [] +synonym: "tracheloacromial muscle" EXACT [http://en.wikipedia.org/wiki/Levator_claviculae_muscle] +xref: http://en.wikipedia.org/wiki/Levator_claviculae_muscle +is_a: UBERON:0002377 ! muscle of neck +is_a: UBERON:0003897 ! axial muscle +is_a: UBERON:0004518 ! muscle of vertebral column +relationship: has_muscle_insertion UBERON:0001105 {notes="lateral half", source="Wikipedia"} ! clavicle bone +relationship: has_muscle_origin UBERON:0001077 {notes="nterior portion of transverse processes of C1 - C4 vertebrae", source="dbpedia"} ! transverse process of vertebra +relationship: has_muscle_origin UBERON:0002413 ! cervical vertebra +relationship: part_of UBERON:0011364 ! cleidocephalicus muscle + +[Term] +id: UBERON:0011252 +name: scent gland +def: "Scent glands are exocrine glands found in most mammals. They produce semi-viscous secretions which contain pheromones and other semiochemical compounds. These odor-messengers indicate information such as status, territory marking, mood, and sexual power. The odor may be subliminal-not consciously detectable. Though it is not their primary function, the salivary glands may also function as scent glands in some animals." [http://en.wikipedia.org/wiki/Scent_gland] +xref: BTO:0002068 +xref: MESH:D012543 +xref: Scent:gland +is_a: UBERON:0002365 ! exocrine gland + +[Term] +id: UBERON:0011253 +name: gland of anal sac +def: "." [http://en.wikipedia.org/wiki/Anal_gland] +synonym: "anal gland" RELATED [] +synonym: "anal sac gland" EXACT [] +synonym: "castor sac" NARROW SENSU [NCBITaxon:29132] +synonym: "musk gland" RELATED [] +xref: Anal:gland +xref: http://linkedlifedata.com/resource/umls/id/C0162322 +xref: http://www.snomedbrowser.com/Codes/Details/91610001 +xref: NCIT:C32068 +xref: UMLS:C0162322 {source="ncithesaurus:Anal_Gland"} +is_a: UBERON:0003408 ! gland of digestive tract +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0011252 ! scent gland +intersection_of: UBERON:0002365 ! exocrine gland +intersection_of: part_of UBERON:0008978 ! anal sac +relationship: part_of UBERON:0008978 ! anal sac + +[Term] +id: UBERON:0011255 +name: Eimer's organ +def: "A sensory organ in which the epidermis is modified to form bulbous papillae. The organs are formed from a stack of epidermal cells, which is innervated by nerve processes from myelinated fibers in the dermis, which form terminal swellings just below the outer keratinized layer of epidermis. They contain a Merkel cell-neurite complex in the epidermis and a lamellated corpuscle in the dermal connective tissue." [http://en.wikipedia.org/wiki/Eimer's_organ] +xref: Eimer's:organ +is_a: UBERON:0000020 {source="Wikipedia"} ! sense organ +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: has_part UBERON:0003719 ! Pacinian corpuscle +relationship: part_of UBERON:0000412 ! dermal papilla + +[Term] +id: UBERON:0011256 +name: rhinarium +def: "Moist, hairless, crenelated area around nostrils of some mammals" [http://anthro.palomar.edu/primate/glossary.htm, http://en.wikipedia.org/wiki/Rhinarium] +xref: http://en.wikipedia.org/wiki/Rhinarium +is_a: UBERON:0003102 ! surface structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0007827 ! external nose +relationship: surrounds UBERON:0005928 ! external naris + +[Term] +id: UBERON:0011263 +name: femoral gland +def: "A gland arranged along a row on the underside of the hindlimb in some lizards[Kardong]" [ISBN:0073040584] +is_a: UBERON:0019319 ! exocrine gland of integumental system +relationship: part_of UBERON:0000376 {source="ISBN:0073040584"} ! hindlimb stylopod +relationship: part_of UBERON:0002199 {source="ISBN:0073040584"} ! integument + +[Term] +id: UBERON:0011264 +name: femoral pore +def: "Femoral pores are a part of a holocrine secretory gland found on the inside of the thighs of certain lizards and amphisbaenians which releases pheromones to attract mates or mark territory. In certain species only the male has these pores and in other species, both sexes have them, with the males being larger.[1] Femoral pores appear as a series of pits or holes within a row of scales on the ventral portion of the animal's thigh." [http://en.wikipedia.org/wiki/Femoral_pore] +xref: Femoral:pore +is_a: UBERON:0000161 ! orifice +intersection_of: UBERON:0000161 ! orifice +intersection_of: part_of UBERON:0011263 ! femoral gland +relationship: part_of UBERON:0011263 ! femoral gland + +[Term] +id: UBERON:0011265 +name: carpometacarpal joint of digit 1 +def: "A carpometacarpal joint that connects to metacarpal 1." [http://en.wikipedia.org/wiki/Carpometacarpal_joint#Thumb] +subset: pheno_slim +synonym: "carpometacarpal joint of digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "carpometacarpal joint of pollex" EXACT [FMA:35421] +synonym: "carpometacarpal joint of the thumb" RELATED [http://en.wikipedia.org/wiki/Carpometacarpal_joint#Thumb] +synonym: "carpometacarpal joint of thumb" EXACT [FMA:35421] +synonym: "TMJ" RELATED INCONSISTENT [http://en.wikipedia.org/wiki/Carpometacarpal_joint#Thumb] +synonym: "trapeziometacarpal joint" RELATED [http://en.wikipedia.org/wiki/Carpometacarpal_joint#Thumb] +xref: FMA:35421 +xref: http://www.snomedbrowser.com/Codes/Details/361843007 +xref: Thumb +is_a: UBERON:0011119 ! carpometacarpal joint +intersection_of: UBERON:0011119 ! carpometacarpal joint +intersection_of: connects UBERON:0003645 ! metacarpal bone of digit 1 +relationship: connects UBERON:0003645 ! metacarpal bone of digit 1 + +[Term] +id: UBERON:0011266 +name: obsolete tendon of auricularis superior +comment: Made obsolete as the ear muscle inserts into cartilage and aponeurosis without any intervening tendon +synonym: "auricularis superior tendon" EXACT [FMA:53843] +xref: FMA:53843 +is_obsolete: true + +[Term] +id: UBERON:0011267 +name: quadratojugal bone +def: "The quadratojugal is a small jaw bone that is present in most amphibians, reptiles, and birds, but has been lost in mammals. It is connected to the jugal as well as other bones, though these may vary with species. The quadratojugal bone is a small bone between the cheek and otic notch (Lecointre 380). Squamates (lizards and snakes) lack a quadratojugal bone (Schwenk 193)." [http://en.wikipedia.org/wiki/Quadratojugal_bone] +synonym: "quadratjochbeine" RELATED [AAO:0000532] +synonym: "quadrato-jugals" RELATED [AAO:0000532] +synonym: "quadrato-maxillare" RELATED [AAO:0000532] +synonym: "quadratojugal" EXACT [AAO:0000532] +synonym: "quadratojugale" RELATED [AAO:0000532] +synonym: "tympano maleaux" RELATED [AAO:0000532] +xref: AAO:0000532 +xref: Quadratojugal:bone +is_a: UBERON:0002514 {source="AAO-def"} ! intramembranous bone +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0011597 ! bone of upper jaw +relationship: part_of UBERON:0003113 {notes="temporal series", source="ISBN:0073040584"} ! dermatocranium + +[Term] +id: UBERON:0011268 +name: sublingua +def: "A secondary tongue located below the primary tongue in prosimian primates and some primitive mammals. This structure does not have taste buds or salivary glands" [http://en.wikipedia.org/wiki/Sublingua] +synonym: "second tongue" RELATED [http://en.wikipedia.org/wiki/Sublingua] +synonym: "under-tongue" RELATED [http://en.wikipedia.org/wiki/Sublingua] +xref: http://en.wikipedia.org/wiki/Sublingua +is_a: UBERON:0013765 ! digestive system element +relationship: part_of UBERON:0000165 ! mouth + +[Term] +id: UBERON:0011270 +name: dorsal trunk +def: "The part of the trunk that is in the dorsum[cjm]." [http://en.wikipedia.org/wiki/Human_back, UBERONREF:0000006] +synonym: "back of trunk" EXACT [FMA:25056] +synonym: "dorsal part of trunk" EXACT [] +synonym: "dorsum of trunk" EXACT [FMA:25056] +synonym: "trunk back" EXACT [FMA:25056] +xref: EMAPA:35162 +xref: FMA:25056 +xref: Human:back +xref: MA:0000020 +is_a: UBERON:0009569 {source="FMA"} ! subdivision of trunk +relationship: part_of UBERON:0001137 {source="FMA"} ! dorsum + +[Term] +id: UBERON:0011271 +name: caudal-sacral region of vertebral column +def: "Subdivision of vertebral column that is posterior to the sacral region and anterior to the caudal region." [UBERONREF:0000006] +synonym: "caudal-sacral vertebrae series" EXACT [] +synonym: "cloacal vertebrae series" RELATED [http://orcid.org/0000-0002-6601-2165] +xref: AAO:0000080 +is_a: UBERON:0006077 ! subdivision of vertebral column + +[Term] +id: UBERON:0011272 +name: embryonic skin basal layer +synonym: "basal cell layer of skin" RELATED [] +synonym: "outer epithelium of body" RELATED [Wikipathways:WP2062] +xref: EHDAA2:0001845 +is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0010371 ! ecto-epithelium +relationship: develops_from UBERON:0000076 {source="EHDAA2"} ! external ectoderm +relationship: part_of UBERON:0002199 {source="EHDAA2"} ! integument + +[Term] +id: UBERON:0011273 +name: nail of manual digit 1 +def: "A nail that is part of a manual digit 1." [OBOL:automatic] +subset: pheno_slim +synonym: "claw of digit 1 of fore-paw" EXACT [EMAPA:18734] +synonym: "nail of manual digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "nail of thumb" EXACT [FMA:54329] +synonym: "nail plate of thumb" EXACT [FMA:54329] +synonym: "thumb nail" EXACT [FMA:54329] +xref: EMAPA:18734 +xref: FMA:54329 +xref: http://www.snomedbrowser.com/Codes/Details/181584008 +is_a: UBERON:0009565 {source="FMA"} ! nail of manual digit +intersection_of: UBERON:0001705 ! nail +intersection_of: part_of UBERON:0001463 ! manual digit 1 +relationship: part_of UBERON:0001463 ! manual digit 1 + +[Term] +id: UBERON:0011274 +name: nail of manual digit 2 +def: "A nail that is part of a manual digit 2." [OBOL:automatic] +synonym: "claw of digit 2 of fore-paw" EXACT [EMAPA:18735] +synonym: "index finger nail" EXACT [FMA:54332] +synonym: "nail of index finger" EXACT [FMA:54332] +synonym: "nail of manual digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "nail of second finger" EXACT [FMA:54332] +synonym: "nail plate of index finger" EXACT [FMA:54332] +xref: EMAPA:18735 +xref: FMA:54332 +xref: http://www.snomedbrowser.com/Codes/Details/181580004 +is_a: UBERON:0009565 {source="FMA"} ! nail of manual digit +intersection_of: UBERON:0001705 ! nail +intersection_of: part_of UBERON:0003622 ! manual digit 2 +relationship: part_of UBERON:0003622 ! manual digit 2 + +[Term] +id: UBERON:0011275 +name: nail of manual digit 3 +def: "A nail that is part of a manual digit 3." [OBOL:automatic] +synonym: "claw of digit 3 of fore-paw" EXACT [EMAPA:18736] +synonym: "middle finger nail" EXACT [FMA:54335] +synonym: "nail of manual digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "nail of middle finger" EXACT [FMA:54335] +synonym: "nail of third finger" EXACT [FMA:54335] +synonym: "nail plate of middle finger" EXACT [FMA:54335] +xref: EMAPA:18736 +xref: FMA:54335 +xref: http://www.snomedbrowser.com/Codes/Details/181581000 +is_a: UBERON:0009565 {source="FMA"} ! nail of manual digit +intersection_of: UBERON:0001705 ! nail +intersection_of: part_of UBERON:0003623 ! manual digit 3 +relationship: part_of UBERON:0003623 ! manual digit 3 + +[Term] +id: UBERON:0011276 +name: nail of manual digit 4 +def: "A nail that is part of a manual digit 4." [OBOL:automatic] +synonym: "claw of digit 4 of fore-paw" EXACT [EMAPA:18737] +synonym: "nail of fourth finger" EXACT [FMA:54338] +synonym: "nail of manual digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "nail of ring finger" EXACT [FMA:54338] +synonym: "nail plate of ring finger" EXACT [FMA:54338] +synonym: "ring finger nail" EXACT [FMA:54338] +xref: EMAPA:18737 +xref: FMA:54338 +xref: http://www.snomedbrowser.com/Codes/Details/181582007 +is_a: UBERON:0009565 {source="FMA"} ! nail of manual digit +intersection_of: UBERON:0001705 ! nail +intersection_of: part_of UBERON:0003624 ! manual digit 4 +relationship: part_of UBERON:0003624 ! manual digit 4 + +[Term] +id: UBERON:0011277 +name: nail of manual digit 5 +def: "A nail that is part of a manual digit 5." [OBOL:automatic] +subset: pheno_slim +synonym: "claw of digit 5 of fore-paw" EXACT [EMAPA:18738] +synonym: "little finger nail" EXACT [FMA:54341] +synonym: "nail of fifth finger" EXACT [FMA:54341] +synonym: "nail of little finger" RELATED [FMA:54341] +synonym: "nail of manual digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "nail plate of little finger" EXACT [FMA:54341] +xref: EMAPA:18738 +xref: FMA:54341 +xref: http://www.snomedbrowser.com/Codes/Details/181583002 +is_a: UBERON:0009565 {source="FMA"} ! nail of manual digit +intersection_of: UBERON:0001705 ! nail +intersection_of: part_of UBERON:0003625 ! manual digit 5 +relationship: part_of UBERON:0003625 ! manual digit 5 + +[Term] +id: UBERON:0011278 +name: nail of pedal digit 1 +def: "A nail that is part of a pedal digit 1." [OBOL:automatic] +subset: pheno_slim +synonym: "big toe nail" EXACT [FMA:54344] +synonym: "claw of digit 1 of hind-paw" EXACT [EMAPA:18739] +synonym: "nail of big toe" EXACT [FMA:54344] +synonym: "nail of first toe" RELATED [FMA:54344] +synonym: "nail of great toe" EXACT [FMA:54344] +synonym: "nail of pedal digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "nail plate of big toe" EXACT [FMA:54344] +xref: EMAPA:18739 +xref: FMA:54344 +xref: http://www.snomedbrowser.com/Codes/Details/181592004 +is_a: UBERON:0009567 {source="FMA"} ! nail of pedal digit +intersection_of: UBERON:0001705 ! nail +intersection_of: part_of UBERON:0003631 ! pedal digit 1 +relationship: part_of UBERON:0003631 ! pedal digit 1 + +[Term] +id: UBERON:0011279 +name: nail of pedal digit 2 +def: "A nail that is part of a pedal digit 2." [OBOL:automatic] +synonym: "claw of digit 2 of hind-paw" EXACT [EMAPA:18740] +synonym: "nail of pedal digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "nail of second toe" EXACT [FMA:54347] +synonym: "nail plate of second toe" EXACT [FMA:54347] +synonym: "second toe nail" EXACT [FMA:54347] +xref: EMAPA:18740 +xref: FMA:54347 +xref: http://www.snomedbrowser.com/Codes/Details/181593009 +is_a: UBERON:0009567 {source="FMA"} ! nail of pedal digit +intersection_of: UBERON:0001705 ! nail +intersection_of: part_of UBERON:0003632 ! pedal digit 2 +relationship: part_of UBERON:0003632 ! pedal digit 2 + +[Term] +id: UBERON:0011280 +name: nail of pedal digit 3 +def: "A nail that is part of a pedal digit 3." [OBOL:automatic] +synonym: "claw of digit 3 of hind-paw" EXACT [EMAPA:18741] +synonym: "nail of pedal digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "nail of third toe" EXACT [FMA:54350] +synonym: "nail plate of third toe" EXACT [FMA:54350] +synonym: "third toe nail" EXACT [FMA:54350] +xref: EMAPA:18741 +xref: FMA:54350 +xref: http://www.snomedbrowser.com/Codes/Details/181594003 +is_a: UBERON:0009567 {source="FMA"} ! nail of pedal digit +intersection_of: UBERON:0001705 ! nail +intersection_of: part_of UBERON:0003633 ! pedal digit 3 +relationship: part_of UBERON:0003633 ! pedal digit 3 + +[Term] +id: UBERON:0011281 +name: nail of pedal digit 4 +def: "A nail that is part of a pedal digit 4." [OBOL:automatic] +synonym: "claw of digit 4 of hind-paw" EXACT [EMAPA:18742] +synonym: "fourth toe nail" EXACT [FMA:54353] +synonym: "nail of fourth toe" EXACT [FMA:54353] +synonym: "nail of pedal digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "nail plate of fourth toe" EXACT [FMA:54353] +xref: EMAPA:18742 +xref: FMA:54353 +xref: http://www.snomedbrowser.com/Codes/Details/181595002 +is_a: UBERON:0009567 {source="FMA"} ! nail of pedal digit +intersection_of: UBERON:0001705 ! nail +intersection_of: part_of UBERON:0003634 ! pedal digit 4 +relationship: part_of UBERON:0003634 ! pedal digit 4 + +[Term] +id: UBERON:0011282 +name: nail of pedal digit 5 +def: "A nail that is part of a pedal digit 5." [OBOL:automatic] +subset: pheno_slim +synonym: "claw of digit 5 of hind-paw" EXACT [EMAPA:18743] +synonym: "little toe nail" EXACT [FMA:54356] +synonym: "nail of fifth toe" EXACT [FMA:54356] +synonym: "nail of little toe" EXACT [FMA:54356] +synonym: "nail of pedal digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "nail plate of little toe" EXACT [FMA:54356] +xref: EMAPA:18743 +xref: FMA:54356 +xref: http://www.snomedbrowser.com/Codes/Details/181596001 +is_a: UBERON:0009567 {source="FMA"} ! nail of pedal digit +intersection_of: UBERON:0001705 ! nail +intersection_of: part_of UBERON:0003635 ! pedal digit 5 +relationship: part_of UBERON:0003635 ! pedal digit 5 + +[Term] +id: UBERON:0011283 +name: epoophoron +def: "A remnant of the Mesonephric duct that can be found next to the ovary and fallopian tube." [http://en.wikipedia.org/wiki/Epoophoron] +synonym: "epooephoron" RELATED [http://en.wikipedia.org/wiki/Epoophoron] +synonym: "epoöphoron" RELATED [http://en.wikipedia.org/wiki/Epoophoron] +synonym: "organ of rosenmueller" RELATED [http://en.wikipedia.org/wiki/Epoophoron] +synonym: "organ of Rosenmuller" EXACT [FMA:18691] +synonym: "organ of rosenmuller" RELATED [http://en.wikipedia.org/wiki/Epoophoron] +synonym: "organ of Rosenmüller" RELATED [http://en.wikipedia.org/wiki/Epoophoron] +synonym: "parovarium" RELATED [http://en.wikipedia.org/wiki/Epoophoron] +xref: FMA:18691 +xref: http://en.wikipedia.org/wiki/Epoophoron +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0006590 {source="FMA"} ! remnant of embryonic structure +relationship: develops_from UBERON:0003074 {source="Wikipedia"} ! mesonephric duct +relationship: part_of UBERON:0000474 ! female reproductive system +relationship: sexually_homologous_to UBERON:0001301 {source="Wikipedia"} ! epididymis + +[Term] +id: UBERON:0011287 +name: rostral organ +def: "A putative electroreceptor organ located in the medial rostral cavity in the ethmoid portion of the chondrocranium of Coelacanths. It is surrounded by an insulating layer of adipose tissue and innervated by the superficial ophthalmic nerve." [http://en.wikipedia.org/wiki/Rostral_organ] +comment: classification as electric organ is putative +xref: Rostral:organ +is_a: UBERON:0010521 ! electroreceptor organ +relationship: innervated_by UBERON:0000348 ! ophthalmic nerve +relationship: part_of UBERON:0011241 ! ethmoid region +relationship: surrounded_by UBERON:0001013 ! adipose tissue + +[Term] +id: UBERON:0011288 +name: stomochord +def: "A flexible, unpaired, hollow tube found in hemichordates that arises in embryonic development as an outpocketing from the roof of the embryonic gut anterior to the pharynx. In adults, they extend dorsally from the pharynx into the probiscis, and serve to communicate with the oral cavity." [http://en.wikipedia.org/wiki/Stomochord, http://www.ncbi.nlm.nih.gov/pubmed/25214631] +synonym: "stomatochord" RELATED [] +xref: http://en.wikipedia.org/wiki/Stomochord +is_a: UBERON:0000481 ! multi-tissue structure +relationship: develops_from UBERON:0007026 ! presumptive gut +relationship: existence_starts_during UBERON:0000068 ! embryo stage + +[Term] +id: UBERON:0011289 +name: pharyngobasilar fascia +def: "The pharyngeal aponeurosis (or pharyngobasilar fascia, or fibrous coat), is situated between the mucous and muscular layers. It is thick above where the muscular fibers are wanting, and is firmly connected to the basilar portion of the occipital and the petrous portions of the temporal bones. As it descends it diminishes in thickness, and is gradually lost. It is strengthened posteriorly by a strong fibrous band, which is attached above to the pharyngeal spine on the under surface of the basilar portion of the occipital bone, and passes downward, forming a median raphe, which gives attachment to the Constrictores pharyngis." [http://en.wikipedia.org/wiki/Pharyngobasilar_fascia] +synonym: "pharyngeal aponeurosis" EXACT [FMA:55074] +synonym: "pharyngeal aponeurosis" RELATED [http://en.wikipedia.org/wiki/Pharyngobasilar_fascia] +xref: FMA:55074 +xref: http://www.snomedbrowser.com/Codes/Details/16675008 +xref: Pharyngobasilar:fascia +is_a: UBERON:0006614 {source="FMA"} ! aponeurosis +intersection_of: UBERON:0006614 ! aponeurosis +intersection_of: part_of UBERON:0001042 ! chordate pharynx +relationship: part_of UBERON:0001042 ! chordate pharynx + +[Term] +id: UBERON:0011298 +name: submucosa of uterine tube +def: "The submucous layer of the wall of the uterine tube." [BTO:0002116] +synonym: "submucosa of fallopian tube" EXACT [] +synonym: "submucous layer of uterine tube" RELATED [BTO:0002116] +synonym: "tela submucosa tubae uterinae" EXACT LATIN [BTO:0002116] +synonym: "uterine submucosa" RELATED [] +xref: BTO:0002116 +xref: http://www.snomedbrowser.com/Codes/Details/245489008 +is_a: UBERON:0000009 ! submucosa +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0003889 ! fallopian tube +relationship: part_of UBERON:0003889 ! fallopian tube + +[Term] +id: UBERON:0011299 +name: white matter of telencephalon +alt_id: UBERON:0013202 +alt_id: UBERON:0022550 +def: "A partion of white matter that is part of a telencephalon. This can be further subdivided in some species, for example, into hemisphere white matter and the corpus callosum." [https://orcid.org/0000-0002-6601-2165] +synonym: "predominantly white regional part of telencephalon" EXACT [BIRNLEX:1075] +synonym: "telencephalic tract/commissure" EXACT [ZFA:0000597] +synonym: "telencephalic tracts" NARROW [TAO:0000597] +synonym: "telencephalic white matter" EXACT [HBA:TELWM] +xref: BIRNLEX:1075 +xref: FMA:83930 +xref: HBA:9219 +xref: HBA:9230 +xref: TAO:0000597 +xref: ZFA:0000597 +is_a: UBERON:0019261 ! white matter of forebrain +intersection_of: UBERON:0002316 ! white matter +intersection_of: part_of UBERON:0001893 ! telencephalon +relationship: part_of UBERON:0001893 ! telencephalon + +[Term] +id: UBERON:0011300 +name: gray matter of telencephalon +alt_id: UBERON:0024186 +def: "A portion of gray matter that is part of a telencephalon." [OBOL:automatic] +synonym: "predominantly gray regional part of telencephalon" EXACT [BIRNLEX:1067] +xref: BIRNLEX:1067 +xref: FMA:83911 +is_a: UBERON:0019264 ! gray matter of forebrain +intersection_of: UBERON:0002020 ! gray matter +intersection_of: part_of UBERON:0001893 ! telencephalon +relationship: part_of UBERON:0001893 ! telencephalon + +[Term] +id: UBERON:0011301 +name: manubrium sternum pre-cartilage condensation +synonym: "manubrium sterni pre-cartilage condensation" EXACT [EHDAA2:0001063] +xref: EHDAA2:0001063 +xref: EHDAA:9563 +is_a: UBERON:0005256 ! trunk mesenchyme +is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation +relationship: develops_from UBERON:0006210 {source="EHDAA2"} ! body-wall mesenchyme +relationship: part_of UBERON:0000975 {source="EHDAA2"} ! sternum + +[Term] +id: UBERON:0011302 +name: tunicate tunic +def: "Outer covering of an animal typically consisting primarily of cellulose (tunicin) in addition to varying amounts of water, protein and carbohydrates. The tunicate is a characteristic feature of Tunicata" [http://en.wikipedia.org/wiki/Ascidiacea#Anatomy, ISBN:0030229073] +xref: Anatomy +xref: BSA:0000042 +is_a: UBERON:0003102 ! surface structure +relationship: bounding_layer_of UBERON:0000468 ! multicellular organism +relationship: part_of UBERON:0007023 ! adult organism + +[Term] +id: UBERON:0011303 +name: lamprey sucker +xref: http://purl.obolibrary.org/obo/uberon/images/lamprey_sucker_rosava_3238889218.jpg +is_a: UBERON:0000475 ! organism subdivision +relationship: part_of UBERON:0000165 ! mouth + +[Term] +id: UBERON:0011304 +name: tunicate postabdomen +def: "Basalmost subdivision of a tunicate containing the heart and reproductive organs" [ISBN:0030229073] +is_a: UBERON:0000475 ! organism subdivision + +[Term] +id: UBERON:0011305 +name: superficial part of temporalis +def: "The superficial temporalis muscle is a separable part of the temporalis muscle that attaches to the temporalis fascia" [MFMO:0000087] +synonym: "anterior temporal" EXACT [MFMO:0000087] +synonym: "temporal muscle anterolateral part" EXACT [MFMO:0000087] +synonym: "temporales" EXACT [MFMO:0000087] +synonym: "temporalis anterior head" EXACT [MFMO:0000087] +synonym: "temporalis pars anterior" EXACT [MFMO:0000087] +synonym: "temporalis pars superficialis" EXACT [MFMO:0000087] +xref: MFMO:0000087 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0034944 ! zone of organ +intersection_of: UBERON:0034944 ! zone of organ +intersection_of: in_superficial_part_of UBERON:0001598 ! temporalis muscle +disjoint_from: UBERON:0011306 {source="lexical"} ! deep part of temporalis +relationship: attaches_to UBERON:0035108 {source="MFMO"} ! temporalis fascia +relationship: in_superficial_part_of UBERON:0001598 ! temporalis muscle +relationship: part_of UBERON:0001598 ! temporalis muscle + +[Term] +id: UBERON:0011306 +name: deep part of temporalis +def: "The deep temporalis muscle is a separable part of the temporalis muscle that that attaches to the bony wall of the braincase and is deep to the superficial temporalis." [MFMO:0000086] +synonym: "medial temporal" EXACT [MFMO:0000086] +synonym: "posterior temporal" EXACT [MFMO:0000086] +synonym: "temporal muscle posterior part" EXACT [MFMO:0000086] +synonym: "temporalis bbHauptmassebb" EXACT [MFMO:0000086] +synonym: "temporalis lamina profunda" EXACT [MFMO:0000086] +synonym: "temporalis pars posterior" EXACT [MFMO:0000086] +synonym: "temporalis pars profunda" EXACT [MFMO:0000086] +synonym: "temporalis posterior head" EXACT [MFMO:0000086] +xref: MFMO:0000086 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0034944 ! zone of organ +intersection_of: UBERON:0034944 ! zone of organ +intersection_of: in_deep_part_of UBERON:0001597 ! masseter muscle +relationship: in_deep_part_of UBERON:0001597 ! masseter muscle +relationship: part_of UBERON:0001597 ! masseter muscle + +[Term] +id: UBERON:0011307 +name: suprazygomatic part of temporalis +def: "The suprazygomatic part of the temporalis muscle is a separable part of the deep temporalis that attaches to the superior surface of the temporal root of the zygomatic arch." [MFMO:0000088] +synonym: "temporalis pars suprazygomatica" EXACT [MFMO:0000088] +synonym: "zygomatic temporalis" EXACT [MFMO:0000088] +xref: MFMO:0000088 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0034944 ! zone of organ +relationship: part_of UBERON:0001598 {source="FEED"} ! temporalis muscle + +[Term] +id: UBERON:0011308 +name: pars reflexa of masseter +def: "The pars reflexa is a separable part of the superficial masseter muscle that attaches to the medial surface of the mandible." [FEED:FEED] +synonym: "masseter, pars reflexa" EXACT [FEED:FEED] +synonym: "pars reflexa" BROAD [FEED:FEED] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0011140 ! superficial part of masseter muscle + +[Term] +id: UBERON:0011309 +name: body of mandible +def: "The zone of the mandible that carries the teeth." [http://www.avdc.org/Nomenclature.pdf] +synonym: "body of the mandible" RELATED [http://en.wikipedia.org/wiki/Body_of_mandible] +synonym: "corpus mandibulae" EXACT LATIN [http://www.avdc.org/Nomenclature.pdf] +synonym: "mandibular body" EXACT [FMA:52827] +xref: FMA:52827 +xref: http://en.wikipedia.org/wiki/Body_of_mandible +xref: http://www.snomedbrowser.com/Codes/Details/244684002 +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0001684 {source="FMA"} ! mandible + +[Term] +id: UBERON:0011310 +name: masseteric fossa +def: ".The fossa for the masseter. In some therapsids, the coronoid process of the dentary bears a large external depression which accommodates the masseter -- an important muscle in closing and in grinding motions of the jaw." [http://palaeos.com/vertebrates/glossary/glossaryM.html] +synonym: "masseteric cavity" RELATED [] +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0001684 {source="FMA"} ! mandible + +[Term] +id: UBERON:0011311 +name: hyoepiglottic ligament +def: "An elastic band connecting the anterior surface of the epiglottis to the upper border of the body of the hyoid bone." [http://en.wikipedia.org/wiki/Hyoepiglottic_ligament] +synonym: "hyo-epiglottic ligament" EXACT [FMA:55227] +synonym: "igamentum hyoepiglotticum" EXACT LATIN [http://en.wikipedia.org/wiki/Hyoepiglottic_ligament] +xref: FMA:55227 +xref: http://linkedlifedata.com/resource/umls/id/C0225515 +xref: http://www.snomedbrowser.com/Codes/Details/279552007 +xref: Hyoepiglottic:ligament +xref: NCIT:C32751 +xref: UMLS:C0225515 {source="ncithesaurus:Hyoepiglottic_Ligament"} +is_a: UBERON:0001730 {source="FMA"} ! extrinsic ligament of larynx +relationship: connects UBERON:0000388 ! epiglottis +relationship: connects UBERON:0003999 ! hyoid bone body + +[Term] +id: UBERON:0011312 +name: hyoepiglottic muscle +comment: Developed in mammals other than human. EDITOR NOTE: TODO add relationship to hyoepiglottic ligament. +synonym: "hyo-epiglottic muscle" EXACT [] +synonym: "hyoepiglotticus" EXACT [] +synonym: "hyoepiglottus" EXACT [] +is_a: UBERON:0001568 ! muscle of larynx +relationship: attaches_to UBERON:0000388 ! epiglottis +relationship: attaches_to UBERON:0003999 ! hyoid bone body + +[Term] +id: UBERON:0011313 +name: posterior subdivision of masseter +synonym: "masseter, posterior" EXACT [FEED:FEED] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0034944 ! zone of organ +intersection_of: UBERON:0034944 ! zone of organ +intersection_of: in_posterior_side_of UBERON:0001597 ! masseter muscle +disjoint_from: UBERON:0011314 {source="lexical"} ! anterior subdivision of masseter +relationship: in_posterior_side_of UBERON:0001597 ! masseter muscle +relationship: part_of UBERON:0001597 ! masseter muscle + +[Term] +id: UBERON:0011314 +name: anterior subdivision of masseter +synonym: "masseter, anterior" EXACT [FEED:FEED] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0034944 ! zone of organ +intersection_of: UBERON:0034944 ! zone of organ +intersection_of: in_anterior_side_of UBERON:0001597 ! masseter muscle +relationship: in_anterior_side_of UBERON:0001597 ! masseter muscle +relationship: part_of UBERON:0001597 ! masseter muscle + +[Term] +id: UBERON:0011315 +name: digastric branch of facial nerve +def: "The digastric branch of facial nerve arises close to the stylomastoid foramen, and divides into several filaments, which supply the posterior belly of the Digastricus; one of these filaments joins the glossopharyngeal nerve." [http://en.wikipedia.org/wiki/Digastric_part_of_facial_nerve] +synonym: "branch of facial nerve to posterior belly of digastric" RELATED [FMA:53288] +synonym: "digastric branch" BROAD [http://en.wikipedia.org/wiki/Digastric_part_of_facial_nerve] +synonym: "digastric branch of facial nerve (CN VII)" EXACT [FEED:FEED] +synonym: "facial nerve, digastric branch" EXACT [] +synonym: "nerve to posterior belly of digastric" EXACT [FMA:53288] +synonym: "ramus digastricus (nervus facialis)" EXACT [FMA:53288] +synonym: "ramus digastricus nervus facialis" EXACT LATIN [FMA:TA] +xref: FMA:53288 +xref: http://en.wikipedia.org/wiki/Digastric_part_of_facial_nerve +xref: http://www.snomedbrowser.com/Codes/Details/17743006 +is_a: UBERON:0011779 ! nerve of head region +intersection_of: UBERON:0001021 ! nerve +intersection_of: branching_part_of UBERON:0001647 ! facial nerve +intersection_of: innervates UBERON:0010944 ! posterior digastric muscle +relationship: branching_part_of UBERON:0001647 ! facial nerve +relationship: innervates UBERON:0010944 ! posterior digastric muscle +relationship: part_of UBERON:0001647 ! facial nerve + +[Term] +id: UBERON:0011316 +name: nerve to stylohyoid from facial nerve +def: "The stylohyoid branch of facial nerve frequently arises in conjunction with the digastric branch; it is long and slender, and enters the Stylohyoideus about its middle." [http://en.wikipedia.org/wiki/Stylohyoid_part_of_facial_nerve] +synonym: "facial nerve stylohyoid branch" EXACT [FMA:53298] +synonym: "nerve to stylohyoid" EXACT [FMA:53298] +synonym: "ramus stylohyoideus" EXACT [FMA:53298] +synonym: "ramus stylohyoideus nervus facialis" EXACT LATIN [FMA:TA] +synonym: "stylodigastric nerve" EXACT [FMA:53298] +synonym: "stylohyoid branch" RELATED [http://en.wikipedia.org/wiki/Stylohyoid_part_of_facial_nerve] +synonym: "stylohyoid branch of facial nerve" EXACT [FMA:53298] +xref: FMA:53298 +xref: http://en.wikipedia.org/wiki/Stylohyoid_part_of_facial_nerve +xref: http://www.snomedbrowser.com/Codes/Details/89590005 +is_a: UBERON:0011779 ! nerve of head region +intersection_of: UBERON:0001021 ! nerve +intersection_of: branching_part_of UBERON:0001647 ! facial nerve +intersection_of: innervates UBERON:0008712 ! stylohyoid muscle +relationship: branching_part_of UBERON:0001647 ! facial nerve +relationship: innervates UBERON:0008712 ! stylohyoid muscle +relationship: part_of UBERON:0001647 ! facial nerve + +[Term] +id: UBERON:0011317 +name: nerve to stylopharyngeus from glossopharyngeal nerve +def: "The stylopharyngeal branch of glossopharyngeal nerve is distributed to the Stylopharyngeus." [http://en.wikipedia.org/wiki/Stylopharyngeal_branch_of_glossopharyngeal_nerve] +synonym: "branch of glossopharyngeal nerve to stylopharyngeus" EXACT [FMA:53487] +synonym: "nerve to stylopharyngeus" EXACT [FMA:53487] +synonym: "ramus musculi stylopharyngei nervus glossopharyngei" EXACT LATIN [FMA:TA] +synonym: "stylopharyngeal branch of glossopharyngeal nerve" EXACT [FMA:53487] +xref: FMA:53487 +xref: http://en.wikipedia.org/wiki/Stylopharyngeal_branch_of_glossopharyngeal_nerve +xref: http://www.snomedbrowser.com/Codes/Details/280294008 +is_a: UBERON:0011779 ! nerve of head region +intersection_of: UBERON:0001021 ! nerve +intersection_of: branching_part_of UBERON:0001649 ! glossopharyngeal nerve +intersection_of: innervates UBERON:0008804 ! stylopharyngeus muscle +relationship: branching_part_of UBERON:0001649 ! glossopharyngeal nerve +relationship: innervates UBERON:0008804 ! stylopharyngeus muscle +relationship: part_of UBERON:0001649 ! glossopharyngeal nerve + +[Term] +id: UBERON:0011318 +name: capsule of temporomandibular joint +def: "The articular capsule (capsular ligament) is a thin, loose envelope, attached above to the circumference of the mandibular fossa and the articular tubercle immediately in front; below, to the neck of the condyle of the mandible." [http://en.wikipedia.org/wiki/Capsule_of_temporomandibular_joint] +synonym: "articular capsule of temporomandibular joint" EXACT [FMA:57050] +synonym: "capsula articularis articulationis temporomandibularis" EXACT LATIN [http://en.wikipedia.org/wiki/Capsule_of_the_temporomandibular_joint] +xref: FMA:57050 +xref: http://en.wikipedia.org/wiki/Capsule_of_temporomandibular_joint +xref: http://www.snomedbrowser.com/Codes/Details/303404000 +xref: MFMO:0000046 +is_a: UBERON:0001484 ! articular capsule +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0013765 ! digestive system element +intersection_of: UBERON:0001484 ! articular capsule +intersection_of: part_of UBERON:0003700 ! temporomandibular joint +relationship: part_of UBERON:0003700 ! temporomandibular joint + +[Term] +id: UBERON:0011319 +name: disk of temporomandibular joint +def: "The fibrocartilaginous plate that separates the joint into upper and lower cavities." [BTO:0003675, http://en.wikipedia.org/wiki/Articular_disk_of_the_temporomandibular_joint] +synonym: "articular disc of temporomandibular joint" EXACT [FMA:57059] +synonym: "articular disc of temporomandibular joint" RELATED [BTO:0003675] +synonym: "articular disk of temporomandibular joint" EXACT [FMA:57059] +synonym: "discus articularis (articulatio temporomandibularis)" EXACT [FMA:57059] +synonym: "discus articularis articulationis temporomandibularis" EXACT LATIN [FMA:TA] +synonym: "discus articularis articulationis temporomandibularis" EXACT LATIN [http://en.wikipedia.org/wiki/Articular_disk_of_the_temporomandibular_joint] +synonym: "discus articularis temporomandibularis" RELATED [BTO:0003675] +synonym: "mandibular disk" RELATED [BTO:0003675] +synonym: "temporomandibular articular disk" EXACT [BTO:0003675] +synonym: "temporomandibular articular disk" RELATED [GAID:273] +synonym: "temporomandibular joint disk" RELATED [http://en.wikipedia.org/wiki/Articular_disk_of_the_temporomandibular_joint] +xref: BTO:0003675 +xref: FMA:57059 +xref: http://en.wikipedia.org/wiki/Articular_disk_of_the_temporomandibular_joint +xref: http://www.snomedbrowser.com/Codes/Details/282433007 +xref: MESH:D019224 +is_a: UBERON:0007844 {source="FMA"} ! cartilage element +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0013765 ! digestive system element +relationship: part_of UBERON:0003700 {source="BTO"} ! temporomandibular joint + +[Term] +id: UBERON:0011320 +name: ligament of temporomandibular joint +def: "." [http://en.wikipedia.org/wiki/Temporomandibular_joint#Ligaments] +synonym: "temporomandibular joint ligament" EXACT [FMA:57070] +xref: FMA:57070 +xref: http://www.snomedbrowser.com/Codes/Details/127861009 +xref: Ligaments +is_a: UBERON:0008846 ! skeletal ligament +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0013765 ! digestive system element +intersection_of: UBERON:0008846 ! skeletal ligament +intersection_of: part_of UBERON:0003700 ! temporomandibular joint +relationship: part_of UBERON:0003700 ! temporomandibular joint + +[Term] +id: UBERON:0011321 +name: masseteric nerve +def: "A muscular branch of the mandibular nerve passing to the medial surface of the masseter muscle, which it innervates." [http://medical-dictionary.thefreedictionary.com/masseteric+nerve] +synonym: "nervus massetericus" EXACT LATIN [http://en.wikipedia.org/wiki/Masseteric_nerve] +xref: FMA:53103 +xref: http://www.snomedbrowser.com/Codes/Details/280254006 +xref: Masseteric:nerve +is_a: UBERON:0011779 ! nerve of head region +intersection_of: UBERON:0001021 ! nerve +intersection_of: innervates UBERON:0001597 ! masseter muscle +relationship: branching_part_of UBERON:0000375 {source="FMA"} ! mandibular nerve +relationship: innervates UBERON:0001597 ! masseter muscle +relationship: part_of UBERON:0000375 ! mandibular nerve + +[Term] +id: UBERON:0011322 +name: mylohyoid nerve +def: "A nerve that innervates the mylohyoid muscle and the anterior belly of the digastric muscle." [http://en.wikipedia.org/wiki/Mylohyoid_nerve] +synonym: "branch of inferior alveolar nerve to mylohyoid" EXACT [FMA:53247] +synonym: "mylodigastric nerve" EXACT [FMA:53247] +synonym: "mylohyoid branch of inferior alveolar nerve" EXACT [FMA:53247] +synonym: "nerve to mylohyoid" EXACT [FMA:53247] +synonym: "nerve to mylohyoid" RELATED [http://en.wikipedia.org/wiki/Mylohyoid_nerve] +synonym: "nervus mylohyoideus" EXACT LATIN [FMA:TA] +synonym: "nervus mylohyoideus" EXACT LATIN [http://en.wikipedia.org/wiki/Mylohyoid_nerve] +xref: BAMS:myhy +xref: FMA:53247 +xref: http://www.snomedbrowser.com/Codes/Details/280269007 +xref: Mylohyoid:nerve +is_a: UBERON:0001021 ! nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: innervates UBERON:0001564 ! mylohyoid muscle +relationship: innervates UBERON:0001564 ! mylohyoid muscle + +[Term] +id: UBERON:0011325 +name: pharyngeal nerve plexus +def: "The pharyngeal plexus is a network of nerve fibers innervating most of the palate, larynx, and pharynx. It is located on the surface of the middle pharyngeal constrictor muscle." [http://en.wikipedia.org/wiki/Pharyngeal_plexus_of_vagus_nerve] +synonym: "pharyngeal nerve plexus" EXACT [FMA:82453] +synonym: "pharyngeal plexus of vagus nerve" EXACT [http://en.wikipedia.org/wiki/Pharyngeal_plexus_of_vagus_nerve] +synonym: "plexus pharyngeus nervi vagi" EXACT LATIN [http://en.wikipedia.org/wiki/Pharyngeal_plexus_of_vagus_nerve] +synonym: "vagus nerve pharyngeal plexus" EXACT [] +xref: FMA:82453 +xref: http://en.wikipedia.org/wiki/Pharyngeal_plexus_of_vagus_nerve +xref: http://www.snomedbrowser.com/Codes/Details/369429008 +is_a: UBERON:0001816 {source="FMA"} ! autonomic nerve plexus +relationship: innervates UBERON:0006562 ! pharynx + +[Term] +id: UBERON:0011326 +name: superior laryngeal nerve +def: "The superior laryngeal nerve is a branch of the vagus nerve. It arises from the middle of the ganglion nodosum and in its course receives a branch from the superior cervical ganglion of the sympathetic. It descends, by the side of the pharynx, behind the internal carotid artery, and divides into two branches: external laryngeal nerve internal laryngeal nerve A superior laryngeal nerve palsy changes the pitch of the voice and causes an inability to make explosive sounds. If no recovery is evident three months after the palsy initially presents, the damage is most likely to be permanent. A bilateral palsy presents as a tiring and hoarse voice." [http://en.wikipedia.org/wiki/Superior_laryngeal_nerve] +synonym: "nervus laryngealis superior" EXACT [FMA:6239] +synonym: "nervus laryngeus superior" EXACT LATIN [http://en.wikipedia.org/wiki/Superior_laryngeal_nerve] +synonym: "superior laryngeal branch of inferior vagal ganglion" EXACT [FMA:6239] +synonym: "superior laryngeal branch of vagus" EXACT [FMA:6239] +xref: BAMS:sln +xref: FMA:6239 +xref: http://en.wikipedia.org/wiki/Superior_laryngeal_nerve +xref: http://www.snomedbrowser.com/Codes/Details/279928006 +is_a: UBERON:0011779 ! nerve of head region +is_a: UBERON:0035642 ! laryngeal nerve +relationship: branching_part_of UBERON:0001759 {source="FMA"} ! vagus nerve +relationship: develops_from UBERON:0003115 {source="Wikipedia"} ! pharyngeal arch 4 +relationship: part_of UBERON:0001759 ! vagus nerve + +[Term] +id: UBERON:0011327 +name: deep temporal nerve +def: "The deep temporal nerves, branches of the mandibular division of the trigeminal nerve, are two in number, anterior and posterior. They pass above the upper border of the pterygoideus externus and enter the deep surface of the temporalis." [http://en.wikipedia.org/wiki/Deep_temporal_nerves] +synonym: "deep temporal nerve" RELATED [http://en.wikipedia.org/wiki/Deep_temporal_nerves] +synonym: "nervi temporales profundi" EXACT PLURAL [FMA:TA] +xref: FMA:53187 +xref: http://en.wikipedia.org/wiki/Deep_temporal_nerves +xref: http://www.snomedbrowser.com/Codes/Details/280255007 +is_a: UBERON:0011779 ! nerve of head region +relationship: branching_part_of UBERON:0000375 {source="FMA"} ! mandibular nerve +relationship: innervates UBERON:0001598 ! temporalis muscle +relationship: part_of UBERON:0000375 ! mandibular nerve + +[Term] +id: UBERON:0011332 +name: extrinsic tongue pre-muscle mass +xref: EMAPA:17884 +is_a: UBERON:0005865 ! pre-muscle condensation +intersection_of: UBERON:0005865 ! pre-muscle condensation +intersection_of: has_potential_to_develop_into UBERON:0001575 ! extrinsic muscle of tongue +relationship: has_potential_to_develop_into UBERON:0001575 ! extrinsic muscle of tongue + +[Term] +id: UBERON:0011342 +name: surface of mandible +def: "A anatomical surface that is part of a mandible." [OBOL:automatic] +synonym: "mandibular surface" EXACT [FMA:57558] +xref: FMA:57558 +is_a: UBERON:0036215 ! anatomical surface region +intersection_of: UBERON:0036215 ! anatomical surface region +intersection_of: bounding_layer_of UBERON:0001684 ! mandible +relationship: bounding_layer_of UBERON:0001684 ! mandible +relationship: part_of UBERON:0001684 ! mandible + +[Term] +id: UBERON:0011343 +name: medial surface of mandible +synonym: "internal surface of ramus of mandible" RELATED [FMA:59464] +synonym: "medial surface of mandibular ramus" NARROW [FMA:59464] +synonym: "medial surface of ramus of mandible" EXACT [FMA:59464] +xref: FMA:59464 +is_a: UBERON:0011342 ! surface of mandible +disjoint_from: UBERON:0011344 {source="lexical"} ! lateral surface of mandible + +[Term] +id: UBERON:0011344 +name: lateral surface of mandible +synonym: "external surface of ramus of mandible" RELATED [FMA:59463] +synonym: "lateral surface of mandibular ramus" BROAD [FMA:59463] +synonym: "lateral surface of ramus of mandible" EXACT [FMA:59463] +xref: FMA:59463 +is_a: UBERON:0011342 ! surface of mandible + +[Term] +id: UBERON:0011345 +name: pharyngeal raphe +def: "The Pharyngeal raphe is a raphe that serves as the origin and insertion for several of the pharyngeal constrictors." [http://en.wikipedia.org/wiki/Pharyngeal_raphe] +synonym: "raphe pharyngis" EXACT [http://en.wikipedia.org/wiki/Pharyngeal_raphe] +xref: FMA:55077 +xref: http://www.snomedbrowser.com/Codes/Details/179763009 +xref: Pharyngeal:raphe +is_a: UBERON:0003570 ! respiratory system connective tissue +disjoint_from: UBERON:0011346 ! palatine raphe +relationship: part_of UBERON:0001042 ! chordate pharynx + +[Term] +id: UBERON:0011346 +name: palatine raphe +def: "A raphe running across the palate, from the palatine uvula to the incisive papilla." [http://en.wikipedia.org/wiki/Palatine_raphe] +synonym: "raphe palati" EXACT [http://en.wikipedia.org/wiki/Palatine_raphe] +xref: FMA:75111 +xref: Palatine:raphe +is_a: UBERON:0003566 ! head connective tissue +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0001716 ! secondary palate + +[Term] +id: UBERON:0011347 +name: raphe of hard palate +def: "A palatine raphe that is part of a hard palate." [OBOL:automatic] +xref: http://www.snomedbrowser.com/Codes/Details/368683007 +is_a: UBERON:0011346 ! palatine raphe +intersection_of: UBERON:0011346 ! palatine raphe +intersection_of: part_of UBERON:0003216 ! hard palate +relationship: part_of UBERON:0003216 ! hard palate + +[Term] +id: UBERON:0011348 +name: raphe of soft palate +def: "A palatine raphe that is part of a soft palate." [OBOL:automatic] +xref: http://www.snomedbrowser.com/Codes/Details/245785003 +is_a: UBERON:0011346 ! palatine raphe +intersection_of: UBERON:0011346 ! palatine raphe +intersection_of: part_of UBERON:0001733 ! soft palate +relationship: part_of UBERON:0001733 ! soft palate + +[Term] +id: UBERON:0011349 +name: pterygomandibular raphe +def: "The pterygomandibular raphe (pterygomandibular ligament) is a tendinous band of the buccopharyngeal fascia, attached by one extremity to the hamulus of the medial pterygoid plate, and by the other to the posterior end of the mylohyoid line of the mandible. Its medial surface is covered by the mucous membrane of the mouth. Its lateral surface is separated from the ramus of the mandible by a quantity of adipose tissue. Its posterior border gives attachment to the superior pharyngeal constrictor muscle. Its anterior border attaches to the posterior edge of the buccinator." [http://en.wikipedia.org/wiki/Pterygomandibular_raphe] +synonym: "pterygomandibular ligament" RELATED [http://en.wikipedia.org/wiki/Pterygomandibular_raphe] +synonym: "pterygomandibular raph%c3%a9" RELATED [http://en.wikipedia.org/wiki/Pterygomandibular_raphe] +xref: FMA:55618 +xref: http://www.snomedbrowser.com/Codes/Details/142713007 +xref: Pterygomandibular:raphe +is_a: UBERON:0003566 ! head connective tissue +relationship: part_of UBERON:0000165 ! mouth + +[Term] +id: UBERON:0011350 +name: mylohyoid raphe +synonym: "raphe of the mylohyoid" RELATED [] +is_a: UBERON:0002384 ! connective tissue + +[Term] +id: UBERON:0011357 +name: Reissner's fiber +def: "An acellular strand that runs from subcommissural organ caudally through the ventricular system and central canal to the ampulla caudalis. Develops from glycoproteins secreted into CSF." [http://en.wikipedia.org/wiki/Reissner's_fiber, ISBN:0471888893] +synonym: "Reissner's fibre" EXACT [] +xref: NLX:151878 +xref: Reissner's:fiber +is_a: UBERON:0000476 ! acellular anatomical structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001017 ! central nervous system +relationship: present_in_taxon NCBITaxon:7711 {source="ISBN:0471888893"} + +[Term] +id: UBERON:0011358 +name: infundibular organ +def: "." [http://orcid.org/0000-0002-6601-2165] +comment: Resembles the subcommisural organ structurally, ultrastructurally and immunochemically[Niewenhuys] Gives rise to Reissner's fiber; however secretions are not identical to those of SCO [PMID:9550137][DOI:10.1007/BF00303086] +synonym: "infundibular organ of Boeke" EXACT [] +synonym: "ventral infundibular organ" EXACT [] +is_a: UBERON:0000073 ! regional part of nervous system +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001017 ! central nervous system +relationship: present_in_taxon NCBITaxon:7737 {source="https://doi.org/10.1111/j.1463-6395.1976", stage="larval"} +relationship: produces UBERON:0011357 ! Reissner's fiber + +[Term] +id: UBERON:0011359 +name: urophysis +def: "This is a neurosecretory organ rostral to the ampulla caudalis on the ventral surface of the distal end of the spinal cord. Receives axons from caudal neurosecretory nucleus, which contains Dahlgren cells that secrete urotensin I and II, implicated in osmotic regulation, cardiovascular function and reproduction[Butler]." [ISBN:0471888893] +comment: Shares characteristics with neurohypophysis +xref: BTO:0001848 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005174 ! dorsal region element +is_a: UBERON:0010133 ! neuroendocrine gland +relationship: part_of UBERON:0002240 {source="BTO"} ! spinal cord + +[Term] +id: UBERON:0011360 +name: ampulla caudalis +def: "A ventricle-like space at the end of the central canal" [ISBN:0471888893] +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0002291 {notes="in caudal end of"} ! central canal of spinal cord + +[Term] +id: UBERON:0011362 +name: cranial blood vasculature +def: "A blood vasculature that is part of a head." [OBOL:automatic] +synonym: "cranial blood vessel" EXACT [ZFA:0005297] +synonym: "cranial blood vessels" RELATED PLURAL [TAO:0005297] +synonym: "set of blood vessels of head" EXACT [] +xref: TAO:0005297 +xref: ZFA:0005297 +is_a: UBERON:0002200 ! vasculature of head +is_a: UBERON:0004537 ! blood vasculature +intersection_of: UBERON:0004537 ! blood vasculature +intersection_of: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0011363 +name: cranial lymph vasculature +def: "A lymph vasculature that is part of a head." [OBOL:automatic] +synonym: "cranial lymph vessel" EXACT [ZFA:0005298] +synonym: "cranial lymph vessels" RELATED PLURAL [TAO:0005298] +synonym: "cranial lymphatics" EXACT [UBERON:cjm] +synonym: "set of cranial lymphatic vessels" RELATED [FMA:224562] +synonym: "set of lymphatic vessels of head" EXACT [FMA:224562] +xref: FMA:224562 +xref: TAO:0005298 +xref: ZFA:0005298 +is_a: UBERON:0002200 ! vasculature of head +is_a: UBERON:0004536 ! lymph vasculature +intersection_of: UBERON:0004536 ! lymph vasculature +intersection_of: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0011364 +name: cleidocephalicus muscle +def: "The cleidomastoideus is a thick, strap-like muscle that together with the cleidocervicalis forms the proximal part of the brachiocephalicus. It lies beneath the cleidocervicalis. Its origin is the clavicular tendon with its insertion being at the mastoid process of the temporal bone. It is distinctly narrow and is united with the cleidocervicalis and cleidobrachialis by the clavicular tendon. Together with the other two components of the brachiocephalicus muscle, its primary function is to advance the free limb, however, it can also act as an shoulder extensor. Acting bilaterally, it fixes and depresses the neck, while by its unilateral action, it allows the head and neck to be drawn to the side. Its blood supply is the inferior cervical, carotid and vertebral arteries and its nerve supply is the spinal accessory, cervical and axillary nerves." [MURDOCH:379] +comment: alt def: "Combination of cleidomastoid and cleidocervical muscles" +synonym: "cleidocephalic" EXACT [MA:0002275] +synonym: "cleidocephalic muscle" EXACT [] +synonym: "cleidocephalicus" EXACT [] +synonym: "cleidomastoid" RELATED [] +synonym: "cleidomastoid muscle" RELATED [] +synonym: "cleidomastoideus" RELATED [] +synonym: "pars mastoideus" RELATED [] +xref: EMAPA:37687 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1707412 +xref: MA:0002275 +xref: NCIT:C52893 +xref: UMLS:C1707412 {source="ncithesaurus:Cleidocephalic"} +is_a: UBERON:0014892 ! skeletal muscle organ +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: attaches_to UBERON:0001105 ! clavicle bone +intersection_of: attaches_to UBERON:0011220 ! mastoid process of temporal bone +relationship: attaches_to UBERON:0001105 ! clavicle bone +relationship: attaches_to UBERON:0011220 ! mastoid process of temporal bone +relationship: has_muscle_insertion UBERON:0011220 ! mastoid process of temporal bone +relationship: has_muscle_origin UBERON:0001105 ! clavicle bone +relationship: part_of UBERON:0011368 ! brachiocephalic muscle + +[Term] +id: UBERON:0011366 +name: cleidobrachialis muscle +def: "This muscle makes up the distal segment of the brachiocephalicus. It originates at the clavicular tendon but functionally, from the head and neck through the cleidocervicalis. It inserts at the distal end of the cranial border of the humerus, where it lies between the biceps brachii medially and the brachialis laterally. The muscle partly covers the pectoral muscles at their insertions. In conjunction with the cleidocervicalis, it advances the limb, extends the shoulder and causes lateral movement of the head and neck." [MURDOCH:376] +synonym: "cleidobrachial" EXACT [MA:0002274] +synonym: "cleidobrachial muscle" EXACT [] +synonym: "cleidobrachialis" EXACT [] +xref: EMAPA:37686 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1707411 +xref: MA:0002274 +xref: NCIT:C52892 +xref: UMLS:C1707411 {source="ncithesaurus:Cleidobrachial"} +is_a: UBERON:0001482 ! muscle of shoulder +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: attaches_to UBERON:0000976 ! humerus +intersection_of: attaches_to UBERON:0001105 ! clavicle bone +intersection_of: part_of UBERON:0011364 ! cleidocephalicus muscle +relationship: attaches_to UBERON:0000976 ! humerus +relationship: attaches_to UBERON:0001105 ! clavicle bone +relationship: has_muscle_insertion UBERON:0000976 ! humerus +relationship: has_muscle_origin UBERON:0001105 ! clavicle bone +relationship: part_of UBERON:0011364 ! cleidocephalicus muscle + +[Term] +id: UBERON:0011368 +name: brachiocephalic muscle +def: "The brachiocephalicus is a long and flat, complex of muscles that extends from the lower half of the humeral shaft to the head and neck. The muscle divides into two parts at the clavicular intersection. This is also the point of origin for all the muscles that make up the brachiocephalicus. This point is situated just cranial to the shoulder. The two main sections are the cleidobrachialis which is distal to the clavicular intersection and the cleidocephalicus which extends proximally to the clavivular intersection. The cleidocephalicus can also be divided into the pars cervicalis, which inserts on the broad aponeurosis, over the fibrous raphe of the cranial half of the neck. The other part, the pars mastoideus inserts on the mastoid process of the temporal bone via a strong tendon. The cleidobrachialis extends distally from the clavicular intersection and inserts on the cranial edge of the distal half of the humerus. The tendon that inserts the cleidobrachialis lies between the brachialis muscle and the biceps brachii. As a result of the brachiocephalicus spanning a large region it has the ability to provide a number of actions. These include extending the shoulder joint, protracts the limb, provides lateral movement of the head and allows the neck to be depressed." [http://ccg.murdoch.edu.au/museum/] +comment: The brachiocephalicus is more complex than other muscles of the forelimb. It consists of 2 elements that unite at the clavicle in dogs. In dogs the caudal part, known as the cleidobrachialis, runs from the clavicle to the humerus and is closely associated with the deltoid. The cranial portion runs from the clavicle to various attachments via a broad aponeurosis on the upper part of the head and neck. It is called the cleidomastoideus in the dog because it inserts on the mastoid process of the temporal bone. It may have a different name, like cleido-occipitalis, in other mammals. The name brachiocephalicus signifies that this complex of muscles runs from the upper arm to the head and does not specify the details of muscle attachments because these vary so much from species to species. The brachiocephalicus advances the limb and may also extend the shoulder joint, but this depends on the cranial attachment being fixed and the limb being free to move. However, when the forelimb is firmly on the ground and the head is free to move, it forces the head and neck either ventrally or to one side depending on whether or not both muscles act in tandem +synonym: "brachiocephalicus" BROAD [] +xref: EMAPA:37685 {source="MA:th"} +is_a: UBERON:0001482 ! muscle of shoulder +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: attaches_to UBERON:0000976 ! humerus +intersection_of: attaches_to UBERON:0011220 ! mastoid process of temporal bone +relationship: attaches_to UBERON:0000976 ! humerus +relationship: attaches_to UBERON:0011220 ! mastoid process of temporal bone + +[Term] +id: UBERON:0011369 +name: omotransversarius muscle +def: "The omotransversarius is a straplike muscle, which advances and adducts the forelimb, as well as flexes the neck laterally. It covers the transverse processes of the cervical vertebrae, lying to their side. The omotransversarius lies ventral to the trapezius, cranial to the deltoid muscle and is covered cranially by the cleidocervicalis. It extends from the atlas to the spine of the scapula, with its origin on the transverse process of the atlas and its insertion in the distal end of the spine of the scapula. Its name can be split into omo, which is Greek for shoulder, and tranversarius which relates to its attachment to the transverse process of the atlas. This muscle is innervated by the accessory nerve." [MURDOCH:1433] +synonym: "omotransverse" EXACT [MA:0002349] +synonym: "omotransverse muscle" EXACT [] +xref: EMAPA:37690 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1709311 +xref: MA:0002349 +xref: NCIT:C52972 +xref: UMLS:C1709311 {source="ncithesaurus:Omotransverse"} +is_a: UBERON:0014892 ! skeletal muscle organ +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: attaches_to UBERON:0004651 ! scapula spine +intersection_of: attaches_to UBERON:0011370 ! transverse process of atlas +relationship: attaches_to UBERON:0004651 ! scapula spine +relationship: attaches_to UBERON:0011370 ! transverse process of atlas + +[Term] +id: UBERON:0011370 +name: transverse process of atlas +def: "A transverse process of vertebra that is part of a vertebral bone 1." [OBOL:automatic] +xref: FMA:23981 +xref: http://www.snomedbrowser.com/Codes/Details/181895009 +xref: Transverse:processes +is_a: UBERON:0001077 ! transverse process of vertebra +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0001077 ! transverse process of vertebra +intersection_of: part_of UBERON:0001092 ! vertebral bone 1 +relationship: in_lateral_side_of UBERON:0001092 {source="FMA-abduced-lr"} ! vertebral bone 1 +relationship: part_of UBERON:0001092 ! vertebral bone 1 + +[Term] +id: UBERON:0011371 +name: sternocephalicus muscle +def: "The sternocephalicus is a flat muscle and its caudal border is adjacent to the ventral border of the brachiocephalicus. The lateral aspect of this muscle is crossed obliquely by the external jugular vein. It originates as a unit on the first sternebrae. The cranial portion of the muscle divides into two separate sections with different insertion points. These are the sternomastoideus and the sterno-occipitalis. The ventral portion, the sternomastiodeus is the stronger and main continuation of the sternocephalicus, which inserts on the mastoid part of the temporal bone. The thin but wide dorsal segment, the sterno-occipitalis attaches to the dorsal nuchal crest by a thin aponeurosis. The main action provided by the sternocephalicus is movement of the head and neck to the side. Ventral branches of the cervical nerves are attached to this muscle." [MURDOCH:1749] +synonym: "sternocephalicus" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/21636001 +xref: NCIT:C117980 +is_a: UBERON:0014892 ! skeletal muscle organ +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: has_muscle_insertion UBERON:0001676 ! occipital bone +intersection_of: has_muscle_insertion UBERON:0011220 ! mastoid process of temporal bone +intersection_of: has_muscle_origin UBERON:0002208 ! sternebra +relationship: has_muscle_insertion UBERON:0001676 {notes="nuchal crest"} ! occipital bone +relationship: has_muscle_insertion UBERON:0011220 ! mastoid process of temporal bone +relationship: has_muscle_origin UBERON:0002208 ! sternebra + +[Term] +id: UBERON:0011374 +name: prepuce +def: "A retractable double-layered fold of skin and mucous membrane that covers the glans penis or clitoris. Glands may also be present." [http://orcid.org/0000-0002-6601-2165] +xref: NCIT:C12323 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0034929 ! external soft tissue zone +relationship: develops_from UBERON:0035004 ! preputial swelling +relationship: has_part UBERON:0000344 ! mucosa +relationship: part_of UBERON:0003133 ! reproductive organ +relationship: transformation_of UBERON:0035004 ! preputial swelling + +[Term] +id: UBERON:0011375 +name: skin of prepuce of clitoris +def: "A zone of skin that is part of a prepuce of clitoris." [OBOL:automatic] +synonym: "preputial skin of clitoris" EXACT [FMA:27886] +xref: FMA:27886 +xref: http://www.snomedbrowser.com/Codes/Details/367670008 +is_a: UBERON:0005298 ! skin of clitoris +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0005299 ! prepuce of clitoris +relationship: part_of UBERON:0005299 ! prepuce of clitoris + +[Term] +id: UBERON:0011376 +name: iliothoracic muscle +def: "The iliothoracic group is made up of the abdominal wall muscles: rectus abdominis, external abdominal oblique, internal abdominal obliquus, and the transversus abdominis" [http://emedicine.medscape.com/article/1899031-overview] +synonym: "iliothoracic" EXACT [MA:0002322] +xref: EMAPA:37605 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1708463 +xref: MA:0002322 +xref: NCIT:C52944 +xref: UMLS:C1708463 {source="ncithesaurus:Iliothoracic"} +is_a: UBERON:0001630 ! muscle organ +is_a: UBERON:0005173 ! abdominal segment element +is_a: UBERON:0005174 ! dorsal region element +relationship: part_of UBERON:0005462 ! lower back + +[Term] +id: UBERON:0011377 +name: femorothoracic muscle +def: "The femorospinal group is made up of the psoas major and iliacus muscles" [http://emedicine.medscape.com/article/1899031-overview] +synonym: "femorothoracic" EXACT [MA:0002322] +is_a: UBERON:0001630 ! muscle organ +is_a: UBERON:0005173 ! abdominal segment element +is_a: UBERON:0005174 ! dorsal region element +relationship: part_of UBERON:0005462 ! lower back + +[Term] +id: UBERON:0011379 +name: male external urethral sphincter +def: "The external sphincter muscle of urethra (or sphincter urethrae membranaceae) surrounds the whole length of the membranous portion of the urethra, and is enclosed in the fasciæ of the urogenital diaphragm. They arch across the front of the urethra and bulbourethral glands, pass around the urethra, and behind it unite with the muscle of the opposite side, by means of a tendinous raphé." [http://en.wikipedia.org/wiki/External_sphincter_muscle_of_male_urethra] +synonym: "bulboglandular" RELATED [MA:0002273] +synonym: "bulboglandular muscle" RELATED [] +synonym: "external urethral sphincter of male urethra" EXACT [FMA:19733] +synonym: "male sphincter urethrae" EXACT [FMA:19733] +synonym: "male sphincter urethrae muscle" EXACT [FMA:19733] +synonym: "male urethral sphincter muscle" EXACT [FMA:19733] +synonym: "musculus sphincter urethrae externus (urethra masculina)" EXACT LATIN [FMA:19733, FMA:TA] +synonym: "musculus sphincter urethrae externus urethrae masculinae" EXACT LATIN [http://en.wikipedia.org/wiki/External_sphincter_muscle_of_male_urethra] +synonym: "musculus sphincter urethrae membranaceae" EXACT LATIN [http://en.wikipedia.org/wiki/External_sphincter_muscle_of_male_urethra] +xref: FMA:19733 +xref: http://en.wikipedia.org/wiki/External_sphincter_muscle_of_male_urethra +xref: http://linkedlifedata.com/resource/umls/id/C1707060 +xref: MA:0002273 +xref: NCIT:C52891 +xref: UMLS:C1707060 {source="ncithesaurus:Bulboglandular"} +is_a: UBERON:0004919 ! external urethral sphincter +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0004919 ! external urethral sphincter +intersection_of: part_of UBERON:0000079 ! male reproductive system +relationship: part_of UBERON:0000079 ! male reproductive system + +[Term] +id: UBERON:0011380 +name: female external urethral sphincter +def: "The external sphincter muscle of female urethra is a muscle which controls urination." [http://en.wikipedia.org/wiki/External_sphincter_muscle_of_female_urethra] +synonym: "compressor urethrae" RELATED INCONSISTENT [http://en.wikipedia.org/wiki/External_sphincter_muscle_of_female_urethra] +synonym: "external urethral sphincter of female urethra" EXACT [] +synonym: "musculus sphincter urethrae externus (urethra feminina)" EXACT LATIN [FMA:19778, FMA:TA] +synonym: "musculus sphincter urethrae externus urethrae femininae" EXACT LATIN [http://en.wikipedia.org/wiki/External_sphincter_muscle_of_female_urethra] +synonym: "outer muscle layer of female urethra" EXACT [FMA:19778] +synonym: "rhabdosphincter of female urethra" EXACT [FMA:19778] +synonym: "sphincter urethrovaginalis" RELATED DEPRECATED [http://en.wikipedia.org/wiki/External_sphincter_muscle_of_female_urethra] +synonym: "striated muscle layer of female urethra" EXACT [FMA:19778] +synonym: "urethrovaginal sphincter" RELATED DEPRECATED [http://en.wikipedia.org/wiki/External_sphincter_muscle_of_female_urethra] +xref: FMA:19778 +xref: http://en.wikipedia.org/wiki/External_sphincter_muscle_of_female_urethra +is_a: UBERON:0004919 ! external urethral sphincter +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0004919 ! external urethral sphincter +intersection_of: part_of UBERON:0000474 ! female reproductive system +relationship: part_of UBERON:0000474 ! female reproductive system + +[Term] +id: UBERON:0011383 +name: inferior pancreaticoduodenal vein +def: "A blood vessel running parallel to the inferior pancreatico-duodenal artery that drains blood from the pancreas and duodenum into the splenic vein." [ncithesaurus:Inferior_Pancreatico-Duodenal_Vein] +synonym: "inferior pancreatico-duodenal vein" EXACT [MA:0002191] +xref: EMAPA:37616 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1711328 +xref: MA:0002191 +xref: NCIT:C52692 +xref: UMLS:C1711328 {source="ncithesaurus:Inferior_Pancreatico-Duodenal_Vein"} +is_a: UBERON:0004690 ! pancreaticoduodenal vein + +[Term] +id: UBERON:0011384 +name: superior pancreaticoduodenal vein +synonym: "superior pancreatico-duodenal vein" EXACT [MA:0002192] +synonym: "vena pancreaticoduodenalis superior" EXACT [] +xref: EMAPA:37194 {source="MA:th"} +xref: MA:0002192 +is_a: UBERON:0004690 ! pancreaticoduodenal vein + +[Term] +id: UBERON:0011385 +name: parotidoauricular muscle +def: "Is one of the numerus muscles of the external ear and is of importance since it is encountered in the operation for drainage of infections of the external ear of the dog. As its name suggests, it arises from the fascia over the parotid gland and approaches the auricle from the ventrolateral direction. This muscle is supplied by the facial nerve.The muscles of the external ear with their scattered origins and precisely located insertions provide for displacement and rotation of the ear in all directions. These muscles also have a collective function in communication both within and between species." [MURDOCH:1519] +synonym: "parotidoauricular" EXACT [MA:0002352] +synonym: "parotidoauricularis" EXACT [] +xref: EMAPA:37692 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1709470 +xref: MA:0002352 +xref: NCIT:C52976 +xref: UMLS:C1709470 {source="ncithesaurus:Parotidoauricular"} +is_a: UBERON:0001583 ! extrinsic auricular muscle +relationship: has_muscle_insertion UBERON:0001757 ! pinna +relationship: has_muscle_origin UBERON:0001831 ! parotid gland + +[Term] +id: UBERON:0011386 +name: facial modiolus +def: "A chiasma of facial muscles held together by fibrous tissue, located lateral and slightly superior to each angle of the mouth. It is important in moving the mouth, facial expression and in dentistry. It derives its motor nerve supply from the facial nerve, and its blood supply from labial branches of the facial artery. It is contributed to by the following muscles: orbicularis oris, buccinator, levator anguli oris, depressor anguli oris, zygomaticus major, risorius quadratus labii superioris, quadratus labii inferioris." [http://en.wikipedia.org/wiki/Modiolus_(face)] +synonym: "modiolus" BROAD [MFMO:0000057] +synonym: "modiolus anguli oris" EXACT LATIN [FMA:46837, FMA:TA] +xref: FMA:46837 +xref: MFMO:0000057 +xref: Modiolus:(face) +is_a: UBERON:0002385 ! muscle tissue +relationship: part_of UBERON:0001567 {source="FMA"} ! cheek + +[Term] +id: UBERON:0011387 +name: constrictor vulvae muscle +synonym: "constrictor vulvae" EXACT [MA:0002281] +synonym: "sphincter vaginae" RELATED [http://en.wikipedia.org/wiki/Bulbospongiosus_muscle] +xref: EMAPA:37483 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1707495 +xref: http://www.snomedbrowser.com/Codes/Details/244961006 +xref: MA:0002281 +xref: NCIT:C52898 +xref: UMLS:C1707495 {source="ncithesaurus:Constrictor_Vulvae"} +is_a: UBERON:0011389 {notes="unvetted"} ! bulbospongiosus muscle + +[Term] +id: UBERON:0011388 +name: male bulbospongiosus muscle +def: "A bulbospongiosus muscle that is part of a male reproductive system." [OBOL:automatic] +synonym: "bulbospongiosus of male" EXACT [] +synonym: "male bulbospongiosus" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/244973006 +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0011389 ! bulbospongiosus muscle +intersection_of: UBERON:0011389 ! bulbospongiosus muscle +intersection_of: part_of UBERON:0000079 ! male reproductive system +relationship: continuous_with UBERON:0011379 ! male external urethral sphincter +relationship: part_of UBERON:0000079 ! male reproductive system +relationship: sexually_homologous_to UBERON:0011387 ! constrictor vulvae muscle + +[Term] +id: UBERON:0011389 +name: bulbospongiosus muscle +def: "The bulbospongiosus is the thick extrapelvic continuation of the urethralis. It originates from the perineal body (and midline raphe over corpus spongiosum in male) and inserts at the superficial perineal membrane and dorsal penile or clitoral aponeurosis. In males, the bulbospongiosus muscles are united and surround the base of the penis. They aid in emptying of urine and ejaculate from urethra. In females, these muscles are separated in the middle by the vagina and act to constrict the vaginal introitus. They can also stop the flow of blood into veins, which maintains an erection in the penis of the male and the clitoris of the female. Its nerve connection is the perineal branch of the pudendal nerve (S2, 3, 4)." [http://en.wikipedia.org/wiki/Bulbospongiosus_muscle, MURDOCH:245] +synonym: "bulbocavernosus" RELATED [http://en.wikipedia.org/wiki/Bulbospongiosus_muscle] +synonym: "bulbocavernosus muscle" RELATED [http://en.wikipedia.org/wiki/Bulbospongiosus_muscle] +synonym: "bulbocavernous" RELATED [http://en.wikipedia.org/wiki/Bulbospongiosus_muscle] +synonym: "bulbospongiosus" EXACT [FMA:19729] +synonym: "bulbospongiosus" RELATED [http://en.wikipedia.org/wiki/Bulbospongiosus_muscle] +synonym: "musculus bulbospongiosus" EXACT LATIN [http://en.wikipedia.org/wiki/Bulbospongiosus_muscle] +xref: Bulbospongiosus:muscle +xref: EMAPA:37454 {source="MA:th"} +xref: FMA:19729 +xref: http://www.snomedbrowser.com/Codes/Details/244972001 +xref: MA:0003116 +xref: NCIT:C112234 +is_a: UBERON:0002379 ! perineal muscle +relationship: continuous_with UBERON:0001367 ! external anal sphincter +relationship: innervated_by UBERON:0011391 ! perineal nerve + +[Term] +id: UBERON:0011390 +name: pudendal nerve +def: "The pudendal nerve is a somatic nerve in the pelvic region that innervates the external genitalia of both sexes, as well as sphincters for the bladder and the rectum. It originates in Onuf's nucleus in the sacral region of the spinal cord." [http://en.wikipedia.org/wiki/Pudendal_nerve] +synonym: "internal pudendal nerve" RELATED [http://en.wikipedia.org/wiki/Pudendal_nerve] +synonym: "pudenal nerve" RELATED [http://en.wikipedia.org/wiki/Pudendal_nerve] +synonym: "pudendal" RELATED [http://en.wikipedia.org/wiki/Pudendal_nerve] +xref: FMA:19037 +xref: http://www.snomedbrowser.com/Codes/Details/181057000 +xref: Pudendal:nerve +is_a: UBERON:0003444 ! pelvis nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: innervates UBERON:0004176 ! external genitalia +intersection_of: innervates UBERON:0004916 ! anal sphincter +intersection_of: innervates UBERON:0004919 ! external urethral sphincter +relationship: innervates UBERON:0004176 ! external genitalia +relationship: innervates UBERON:0004916 ! anal sphincter +relationship: innervates UBERON:0004919 ! external urethral sphincter +relationship: part_of UBERON:0000012 ! somatic nervous system + +[Term] +id: UBERON:0011391 +name: perineal nerve +def: "A nerve arising from the pudendal nerve that supplies the perineum." [http://en.wikipedia.org/wiki/Perineal_nerve] +synonym: "perineal branch of pudendal nerve" EXACT [FMA:21866] +xref: FMA:21866 +xref: http://www.snomedbrowser.com/Codes/Details/303236009 +xref: Perineal:nerve +is_a: UBERON:0003444 ! pelvis nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: innervates UBERON:0002356 ! perineum +relationship: branching_part_of UBERON:0011390 ! pudendal nerve +relationship: innervates UBERON:0002356 ! perineum +relationship: part_of UBERON:0011390 ! pudendal nerve + +[Term] +id: UBERON:0011392 +name: blood vessel internal elastic membrane +def: "A layer of elastic tissue that forms the outermost part of the tunica intima of blood vessels." [http://en.wikipedia.org/wiki/Internal_elastic_lamina] +synonym: "inner elastic lamina" EXACT [FMA:68205] +synonym: "internal elastic lamina" EXACT [FMA:68205] +synonym: "internal elastic membrane" EXACT [MA:0002863] +xref: EMAPA:36301 +xref: FMA:68205 +xref: http://en.wikipedia.org/wiki/Internal_elastic_lamina +xref: http://linkedlifedata.com/resource/umls/id/C1512870 +xref: http://www.snomedbrowser.com/Codes/Details/86405007 +xref: MA:0002863 +xref: NCIT:C32842 +xref: UMLS:C1512870 {source="ncithesaurus:Internal_Elastic_Membrane"} +is_a: UBERON:0003614 {source="MA"} ! blood vessel elastic tissue +relationship: adjacent_to UBERON:0002522 ! tunica media +relationship: part_of UBERON:0002523 {source="MA"} ! tunica intima + +[Term] +id: UBERON:0011415 +name: cutaneous trunci muscle +def: "Lying just below the skin, cutaneus trunci is one of very few cutaneus muscles. It composes of a thin sheets of muscle that spred over the body in the superficial fasciae. Their role is to twich the skin to rid of pests etc. Cuteneus muscles are found in all domestic species." [MURDOCH:2210] +comment: covers the entire body with a thin layer of muscle under the deepest layer of the skin. When an area of neuronal subluxation is stimulated with the activator, the cutaneous trunci muscle contracts and causes an involuntary reflexive spasm or "twitch" of the skin +synonym: "cutaneous trunci" EXACT [MA:0002285] +xref: EMAPA:37501 {source="MA:th"} +xref: MA:0002285 +xref: NCIT:C52901 +is_a: UBERON:0006821 ! cutaneous muscle + +[Term] +id: UBERON:0011464 +name: levator nasolabialis muscle +def: "Is a principal muscle of the lips which arises over the dorsum of the nose. It runs cranioventrally to insert partly on the wing of the nostril and partly into the lateral part of the upper lip. This muscles function includes dilation of the nostril, elevation and retraction of the upper lip. Branches of the facial nerve supply innervation to this muscle." [MURDOCH:1180] +synonym: "levator nasolabialis" EXACT [MA:0002334] +xref: EMAPA:37502 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1708693 +xref: MA:0002334 +xref: NCIT:C52950 +xref: UMLS:C1708693 {source="ncithesaurus:Levator_Nasolabialis"} +is_a: UBERON:0006821 ! cutaneous muscle + +[Term] +id: UBERON:0011465 +name: longissimus atlantis muscle +def: "A muscle that runs beneath the longissimus capitis and inserts on the wing of the atlas" [http://en.wikipedia.org/wiki/Musculus_longissimus] +synonym: "longissimus atlantis" EXACT [MA:0002335] +xref: EMAPA:37649 {source="MA:th"} +xref: MA:0002335 +is_a: UBERON:0000392 ! longissimus muscle +relationship: attaches_to UBERON:0001092 ! vertebral bone 1 +relationship: present_in_taxon NCBITaxon:9611 +relationship: present_in_taxon NCBITaxon:9788 + +[Term] +id: UBERON:0011472 +name: ventral lateral sacrocaudal muscle +def: "The ventral lateral sacrocaudal is a long strong muscle consisting of numerous individual parts. Its first segment originates from the last lumbar vertebrae and the remainder from the transverse processes of the caudal vertebrae. From the segmented bellies arise long tendons which are embedded in caudal fascia. The first of these tendons inserts onto the sixth caudal vertebrae, the second onto the seventh and so on until the last caudal vertebrae. The ventral lateral sacrocaudal acts to flex the tail and occasionally assists with lateral movement." [MURDOCH:2183] +synonym: "lumbosacrocaudalis" EXACT [MA:0002342] +synonym: "lumbosacrocaudalis muscle" EXACT [MA:0002342] +synonym: "ventral lateral sacrocaudal" EXACT [MURDOCH:2183] +xref: EMAPA:37658 {source="MA:th"} +xref: MA:0002342 +xref: MURDOCH:2183 +is_a: UBERON:0001630 {source="MA"} ! muscle organ +relationship: attaches_to UBERON:0001095 ! caudal vertebra +relationship: attaches_to UBERON:0002414 ! lumbar vertebra + +[Term] +id: UBERON:0011495 +name: rectus thoracis muscle +def: "Rectus thoracis is a very small quadrilateral muscle sheet from the lateral thorax runs from the 3rd-1st rib that is in continuation with rectus abdominis. Its functioning muscle in respiration." [MURDOCH:2224] +synonym: "rectus thoracis" EXACT [MA:0002366] +xref: EMAPA:37709 {source="MA:th"} +xref: MA:0002366 +is_a: UBERON:0005181 ! thoracic segment organ +is_a: UBERON:0014398 ! respiratory muscle +relationship: attaches_to UBERON:0002228 ! rib +relationship: continuous_with UBERON:0002382 ! rectus abdominis muscle + +[Term] +id: UBERON:0011508 +name: sphincter colli superficialis muscle +def: "The sphincter colli superficialis is composed of transverse muscle fibers, and covers the entire area between the lower jaw and chest. The muscle is used to tighten the skin on the underside of the throat." [http://en.wikipedia.org/wiki/Platysma] +synonym: "M. sphincter colli superficialis" EXACT [] +synonym: "sphincter colli superficialis" EXACT [MA:0002380] +xref: EMAPA:37699 {source="MA:th"} +xref: MA:0002380 +xref: NCIT:C53016 +is_a: UBERON:0002377 ! muscle of neck +relationship: dubious_for_taxon NCBITaxon:9989 {reference="Ryan 1989", source="Morphobank"} +relationship: part_of UBERON:0013635 ! sphincter colli muscle +relationship: present_in_taxon NCBITaxon:9975 {reference="Ryan 1989", source="Morphobank"} + +[Term] +id: UBERON:0011509 +name: sphincter colli profundus muscle +def: "The sphincter colli profundus lies below the platysma in the area of the parotid gland (gland regions)." [http://en.wikipedia.org/wiki/Platysma] +comment: The muscles of the mid and upper face derive from the embryonic sphincter colli profundus muscle +synonym: "M. sphincter colli profundus" EXACT [] +synonym: "sphincter colli profundus" EXACT [] +is_a: UBERON:0002377 ! muscle of neck +relationship: part_of UBERON:0013635 ! sphincter colli muscle + +[Term] +id: UBERON:0011510 +name: cloacal bursa +def: "An evagination of the cloaca. In Testudines these are hypothesized to function in different physiological roles, primarily in respiration." [http://www.ncbi.nlm.nih.gov/pubmed/11479904, UBERON:cjm] +comment: Taxon notes: in cryptodires, bursae apparently function primarily in buoyancy control and secondarily in ion transport and nesting, but several pleurodires have been shown recently to use them in aquatic respiration.[PMID:11479904] +is_a: UBERON:0000063 ! organ subunit +relationship: part_of UBERON:0000162 ! cloaca + +[Term] +id: UBERON:0011511 +name: iliococcygeus muscle +def: "The Iliococcygeus arises from the ischial spine and from the posterior part of the tendinous arch of the obturator fascia, and is attached to the coccyx and anococcygeal raphC); it is usually thin, and may fail entirely, or be largely replaced by fibrous tissue. It is part of the levator ani group of muscles. An accessory slip at its posterior part is sometimes named the Iliosacralis." [http://en.wikipedia.org/wiki/Iliococcygeus_muscle] +synonym: "iliococcygeal" RELATED [http://en.wikipedia.org/wiki/Iliococcygeus_muscle] +synonym: "iliococcygei" RELATED [http://en.wikipedia.org/wiki/Iliococcygeus_muscle] +synonym: "iliococcygeus" EXACT [FMA:19092] +synonym: "iliococcygeus" RELATED [http://en.wikipedia.org/wiki/Iliococcygeus_muscle] +synonym: "levator ani - iliococcygeus" RELATED [http://en.wikipedia.org/wiki/Iliococcygeus_muscle] +synonym: "levator ani-iliococcygeus" RELATED [http://en.wikipedia.org/wiki/Iliococcygeus_muscle] +synonym: "musculus iliococcygeus" EXACT LATIN [http://en.wikipedia.org/wiki/Iliococcygeus_muscle] +xref: FMA:19092 +xref: http://www.snomedbrowser.com/Codes/Details/244964003 +xref: Iliococcygeus:muscle +is_a: UBERON:0001325 ! muscle of pelvis +is_a: UBERON:0003897 ! axial muscle +relationship: has_muscle_insertion UBERON:0001350 ! coccyx +relationship: has_muscle_origin UBERON:0009000 ! ischial spine +relationship: part_of UBERON:0001326 {source="FMA"} ! levator ani muscle + +[Term] +id: UBERON:0011512 +name: puborectalis muscle +def: "The fibers which form a sling for the rectum are named the Puborectalis or Sphincter recti. They arise from the lower part of the symphysis pubis, and from the superior fascia of the urogenital diaphragm. They meet with the corresponding fibers of the opposite side around the lower part of the rectum, and form for it a strong sling. Relaxation reduces the angle between rectum and anus, allowing defecation in conjunction with relaxation of the internal and external sphincters. Puborectalis is part of the levator ani group of muscles." [http://en.wikipedia.org/wiki/Puborectalis_muscle] +synonym: "puborectalis" EXACT [FMA:19091] +synonym: "puborectalis" RELATED [http://en.wikipedia.org/wiki/Puborectalis_muscle] +synonym: "sphincter recti" RELATED [http://en.wikipedia.org/wiki/Puborectalis_muscle] +xref: FMA:19091 +xref: http://www.snomedbrowser.com/Codes/Details/244962004 +xref: Puborectalis:muscle +is_a: UBERON:0001325 ! muscle of pelvis +relationship: has_muscle_origin UBERON:0003699 ! pubic symphysis +relationship: part_of UBERON:0001326 {source="FMA"} ! levator ani muscle + +[Term] +id: UBERON:0011528 +name: pubococcygeus muscle +def: "The pubococcygeus muscle or PC muscle is a hammock-like muscle, found in both sexes, that stretches from the pubic bone to the coccyx (tail bone) forming the floor of the pelvic cavity and supporting the pelvic organs. It is part of the levator ani group of muscles." [http://en.wikipedia.org/wiki/Pubococcygeus_muscle] +synonym: "coccygeus muscle" RELATED [http://en.wikipedia.org/wiki/Pubococcygeus_muscle] +synonym: "kegel muscle" RELATED [http://en.wikipedia.org/wiki/Pubococcygeus_muscle] +synonym: "levator ani-pubococcygeus" RELATED [http://en.wikipedia.org/wiki/Pubococcygeus_muscle] +synonym: "levator ani-puborectalis" RELATED [http://en.wikipedia.org/wiki/Pubococcygeus_muscle] +synonym: "levator prostatae" EXACT [FMA:19090] +synonym: "musculus pubococcygeus" EXACT LATIN [http://en.wikipedia.org/wiki/Pubococcygeus_muscle] +synonym: "musculus pubovaginalis" EXACT LATIN [FMA:TA] +synonym: "pc muscle" RELATED [http://en.wikipedia.org/wiki/Pubococcygeus_muscle] +synonym: "pubococcygeal" RELATED [http://en.wikipedia.org/wiki/Pubococcygeus_muscle] +synonym: "pubococcygeal muscles" RELATED [http://en.wikipedia.org/wiki/Pubococcygeus_muscle] +synonym: "pubococcygeus" RELATED [http://en.wikipedia.org/wiki/Pubococcygeus_muscle] +xref: FMA:19090 +xref: http://www.snomedbrowser.com/Codes/Details/244958005 +xref: Pubococcygeus:muscle +is_a: UBERON:0001325 ! muscle of pelvis +is_a: UBERON:0003897 ! axial muscle +relationship: has_muscle_insertion UBERON:0001350 ! coccyx +relationship: has_muscle_insertion UBERON:0003690 ! fused sacrum +relationship: has_muscle_origin UBERON:0001275 ! pubis +relationship: part_of UBERON:0001326 {source="FMA"} ! levator ani muscle + +[Term] +id: UBERON:0011531 +name: male pubococcygeus muscle +def: "A pubococcygeus muscle that is part of a male organism." [OBOL:automatic] +synonym: "levator prostate" EXACT [] +synonym: "levator prostate muscle" EXACT [] +synonym: "musculus levator prostatae" EXACT LATIN [] +xref: http://www.snomedbrowser.com/Codes/Details/71507008 +is_a: UBERON:0011528 ! pubococcygeus muscle +intersection_of: UBERON:0011528 ! pubococcygeus muscle +intersection_of: part_of UBERON:0003101 ! male organism +relationship: part_of UBERON:0003101 ! male organism + +[Term] +id: UBERON:0011532 +name: female pubococcygeus muscle +def: "Pubovaginalis in the female is the equivalent of levator prostatae in the male." [http://orcid.org/0000-0002-6601-2165] +synonym: "pubovaginalis" EXACT [FMA:19090] +synonym: "pubovaginalis muscle" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/208282000 +is_a: UBERON:0011528 ! pubococcygeus muscle +intersection_of: UBERON:0011528 ! pubococcygeus muscle +intersection_of: part_of UBERON:0003100 ! female organism +relationship: part_of UBERON:0003100 ! female organism + +[Term] +id: UBERON:0011533 +name: abductor pollicis, radioulna-prepollox +def: "Originates on the distal radioulna and inserts on the palmar prepollex." [AAO:0010805] +synonym: "m. abductor pollicis" RELATED [AAO:0010805] +xref: AAO:0010805 +is_a: UBERON:0003662 ! forelimb muscle +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: has_muscle_insertion UBERON:0005880 ! prepollex +intersection_of: has_muscle_origin UBERON:0006715 ! radio-ulna +relationship: has_muscle_insertion UBERON:0005880 ! prepollex +relationship: has_muscle_origin UBERON:0006715 ! radio-ulna + +[Term] +id: UBERON:0011534 +name: abductor pollicis muscle +xref: http://www.snomedbrowser.com/Codes/Details/368422008 +is_a: UBERON:0003662 ! forelimb muscle +is_a: UBERON:0006845 ! abductor muscle + +[Term] +id: UBERON:0011535 +name: chondroglossus muscle +def: "The Chondroglossus is sometimes described as a part of the Hyoglossus, but is separated from it by fibers of the Genioglossus, which pass to the side of the pharynx. It is about 2 cm. long, and arises from the medial side and base of the lesser cornu and contiguous portion of the body of the hyoid bone, and passes directly upward to blend with the intrinsic muscular fibers of the tongue, between the Hyoglossus and Genioglossus." [http://en.wikipedia.org/wiki/Chondroglossus] +synonym: "chondroglossal" EXACT [FMA:46700] +synonym: "chondroglossal muscle" RELATED [http://en.wikipedia.org/wiki/Chondroglossus] +synonym: "chondroglossus" EXACT [FMA:46700] +synonym: "musculus chondroglossus" RELATED LATIN [_muscle] +xref: FMA:46700 +xref: http://en.wikipedia.org/wiki/Chondroglossus +xref: http://www.snomedbrowser.com/Codes/Details/244787000 +is_a: UBERON:0002385 ! muscle tissue +relationship: part_of UBERON:0001572 {source="FMA"} ! hyoglossus muscle + +[Term] +id: UBERON:0011564 +name: adductor pollicis muscle of prepollex +def: "Originates from the distal carpal 5-4-3 and inserts on the palmar prepollex." [AAO:0010811] +synonym: "m. adductor pollicis" RELATED [AAO:0010811] +xref: AAO:0010811 +is_a: UBERON:0011145 ! adductor muscle +relationship: has_muscle_insertion UBERON:0005880 ! prepollex + +[Term] +id: UBERON:0011565 +name: lumen of gastrointestinal system +synonym: "cavity of digestive tract" EXACT [] +synonym: "cavity of gastrointestinal tract" EXACT [] +synonym: "gastrointestinal tract lumen" EXACT [FMA:54364] +synonym: "lumen of gastrointestinal tract" EXACT [FMA:54364] +xref: FMA:54364 +xref: http://www.snomedbrowser.com/Codes/Details/432899004 +is_a: UBERON:0002553 ! anatomical cavity +relationship: part_of UBERON:0001007 ! digestive system + +[Term] +id: UBERON:0011566 +name: lumen of esophagus +def: "An anatomical cavity that is part of a esophagus." [OBOL:automatic] +subset: pheno_slim +synonym: "cavity of eosophagus" EXACT [] +synonym: "cavity of esophagus" EXACT [FMA:9398] +synonym: "eosophageal cavity" EXACT [] +synonym: "eosophageal lumen" EXACT [] +synonym: "eosophagus lumen" EXACT [] +synonym: "esophageal cavity" EXACT [FMA:9398] +synonym: "esophageal lumen" EXACT [FMA:9398] +synonym: "esophagus lumen" EXACT [FMA:9398] +xref: EMAPA:18380 +xref: FMA:9398 +xref: http://www.snomedbrowser.com/Codes/Details/322648002 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0001043 ! esophagus +relationship: luminal_space_of UBERON:0001043 ! esophagus +relationship: part_of UBERON:0001043 ! esophagus +relationship: part_of UBERON:0011565 {source="FMA"} ! lumen of gastrointestinal system + +[Term] +id: UBERON:0011574 +name: mesonephric duct lumen +def: "A tube lumen that is part of a mesonephric duct." [OBOL:automatic] +synonym: "cavity of nephric duct" RELATED [] +synonym: "nephric duct lumen" EXACT [EHDAA2:0001244] +xref: EHDAA2:0001244 +is_a: UBERON:0005082 ! tube lumen +intersection_of: UBERON:0005082 ! tube lumen +intersection_of: luminal_space_of UBERON:0003074 ! mesonephric duct +relationship: luminal_space_of UBERON:0003074 ! mesonephric duct +relationship: part_of UBERON:0003074 ! mesonephric duct + +[Term] +id: UBERON:0011575 +name: styloid process of ulna +def: "The styloid process of the ulna projects from the medial and back part of the bone; it descends a little lower than the head, and its rounded end affords attachment to the ulnar collateral ligament of the wrist[WP,unvetted]." [http://en.wikipedia.org/wiki/Ulnar_styloid_process] +subset: pheno_slim +synonym: "processus styloideus ulnae" EXACT LATIN [FMA:TA] +synonym: "processus styloideus ulnae" EXACT LATIN [http://en.wikipedia.org/wiki/Ulnar_styloid_process] +synonym: "ulnar styloid process" EXACT [FMA:23628] +xref: FMA:23628 +xref: http://en.wikipedia.org/wiki/Ulnar_styloid_process +xref: http://www.snomedbrowser.com/Codes/Details/181952009 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0004408 {source="FMA"} ! distal epiphysis of ulna + +[Term] +id: UBERON:0011576 +name: supraorbital ridge +def: "the superior half of the orbital rim, which constitutes the curved superior border of the orbital opening, formed by the frontal bone." [http://www.medilexicon.com/medicaldictionary.php?t=52809] +subset: pheno_slim +synonym: "arcus superciliaris" RELATED LATIN [http://en.wikipedia.org/wiki/Supraorbital_ridge] +synonym: "eyebrow bone" RELATED [http://en.wikipedia.org/wiki/Supraorbital_ridge] +synonym: "frontal torus" NARROW SENSU [http://en.wikipedia.org/wiki/Supraorbital_ridge] +synonym: "frontal torus" RELATED [http://en.wikipedia.org/wiki/Supraorbital_ridge] +synonym: "margin of the orbit" RELATED [http://en.wikipedia.org/wiki/Supraorbital_ridge] +synonym: "margo supraorbitalis" EXACT LATIN [FMA:53097, FMA:TA] +synonym: "margo supraorbitalis (os frontale)" RELATED [FMA:53097] +synonym: "orbital ridge" RELATED [] +synonym: "superciliary ridge" RELATED [http://en.wikipedia.org/wiki/Supraorbital_ridge] +synonym: "superior orbital rim" EXACT [] +synonym: "supra-orbital border of frontal bone" RELATED [FMA:53097] +synonym: "supra-orbital margin" EXACT [FMA:317104] +synonym: "supra-orbital margin of frontal bone" RELATED [FMA:53097] +synonym: "supra-orbital ridge" EXACT [] +synonym: "supraorbital arch" RELATED [http://en.wikipedia.org/wiki/Supraorbital_ridge] +synonym: "supraorbital margin" EXACT [] +synonym: "supraorbital margin" RELATED [http://en.wikipedia.org/wiki/Supraorbital_ridge] +synonym: "supraorbital margin of frontal bone" RELATED [FMA:53097] +synonym: "supraorbital surface of frontal bone" RELATED [FMA:57137] +synonym: "supraorbital torus" NARROW SENSU [http://en.wikipedia.org/wiki/Supraorbital_ridge, NCBITaxon:63221] +synonym: "supraorbital torus" RELATED [http://en.wikipedia.org/wiki/Supraorbital_ridge] +xref: FMA:317104 +xref: http://linkedlifedata.com/resource/umls/id/C2826587 +xref: http://www.snomedbrowser.com/Codes/Details/280550003 +xref: NCIT:C82953 +xref: Supraorbital:ridge +xref: UMLS:C2826587 {source="ncithesaurus:Orbital_Ridge"} +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +disjoint_from: UBERON:2000691 ! supraorbital bone +relationship: part_of UBERON:0000209 ! tetrapod frontal bone +relationship: part_of UBERON:0035849 ! orbital margin +relationship: present_in_taxon NCBITaxon:63221 +relationship: seeAlso FMA:53097 +relationship: seeAlso FMA:57137 + +[Term] +id: UBERON:0011577 +name: flexural organ +def: "A portion of tissue that is the most anterior portion of the notochord. The flexural organ secretes Reissner's fiber-related proteins, including F-spondin." [https://sourceforge.net/tracker/?group_id=76834&atid=994726, ZFA:0007071] +xref: ZFA:0007071 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: has_potential_to_develop_into UBERON:0010134 {notes="unvetted"} ! secretory circumventricular organ +relationship: part_of UBERON:0002328 {source="ZFA"} ! notochord +relationship: present_in_taxon NCBITaxon:7711 + +[Term] +id: UBERON:0011579 +name: venom gland +def: "A gland that secretes venom." [https://orcid.org/0000-0002-6601-2165] +subset: functional_classification +xref: http://www.snomedbrowser.com/Codes/Details/362181001 +is_a: UBERON:0002365 ! exocrine gland +intersection_of: UBERON:0002365 ! exocrine gland +intersection_of: produces UBERON:0007113 ! venom +relationship: produces UBERON:0007113 ! venom + +[Term] +id: UBERON:0011580 +name: platypus crural gland +def: "A kidney-shaped alveolar glands located in the upper thigh connected by a thin-walled duct to a calcaneus spur, or calcar, on each hind limb." [http://en.wikipedia.org/wiki/Platypus_venom#Spur_and_crural_gland] +xref: Spur_and_crural_gland +is_a: UBERON:0011579 ! venom gland +relationship: part_of UBERON:0011581 ! platypus calcaneus spur + +[Term] +id: UBERON:0011581 +name: platypus calcaneus spur +synonym: "ankle spur" RELATED [] +synonym: "calcaneus spur" RELATED [] +synonym: "hind-leg spur" RELATED [] +synonym: "poisonous ankle spur" RELATED [] +is_a: UBERON:0008784 ! lower limb segment +relationship: part_of UBERON:0002387 ! pes +relationship: present_in_taxon NCBITaxon:9257 + +[Term] +id: UBERON:0011582 +name: paired limb/fin skeleton +def: "The collection of all skeletal elements in an individual limb or fin." [https://orcid.org/0000-0002-6601-2165] +subset: homology_grouping +synonym: "limb/fin skeleton" EXACT [VSAO:0000301] +synonym: "skeletal parts of limb/fin" EXACT [] +synonym: "skeleton of limb/fin" EXACT [] +xref: VSAO:0000301 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010912 ! subdivision of skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0004708 ! paired limb/fin +relationship: develops_from UBERON:0003081 {source="ISBN:9780878932504"} ! lateral plate mesoderm +relationship: part_of UBERON:0002091 ! appendicular skeleton +relationship: part_of UBERON:0004708 ! paired limb/fin +relationship: skeleton_of UBERON:0004708 ! paired limb/fin + +[Term] +id: UBERON:0011583 +name: stylopodial skeleton +def: "Proximal element of a free limb skeleton consisting of the femur and humerus in the forelimb stylopodium and hindlimb stylopodium respectively[VSAO, modified]." [VSAO:0005007] +synonym: "mesomere 1" RELATED HOMOLOGY [ISBN:0226313409] +synonym: "propodial skeleton" RELATED [] +synonym: "propodium" RELATED [VSAO:0005007] +synonym: "proximal metapterygial mesomere" RELATED HOMOLOGY [ISBN:0226313409] +synonym: "stylopod" RELATED [VSAO:0005007] +synonym: "stylopodium" RELATED [] +synonym: "stylopodium skeleton" EXACT [] +xref: VSAO:0005007 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010712 ! limb skeleton subdivision +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0002472 ! stylopod +relationship: part_of UBERON:0002472 ! stylopod +relationship: part_of UBERON:0004381 {source="VSAO"} ! skeleton of limb +relationship: skeleton_of UBERON:0002472 ! stylopod + +[Term] +id: UBERON:0011584 +name: zeugopodial skeleton +def: "Section of the forelimb skeleton located between the stylopodium and the autopodium." [VSAO:0005010] +synonym: "epipodial skeleton" EXACT [] +synonym: "epipodium" RELATED [VSAO:0005010] +synonym: "mesomere 2" RELATED HOMOLOGY [ISBN:0226313409] +synonym: "mesomere 2 skeleton" RELATED HOMOLOGY [ISBN:0226313409] +synonym: "skeleton of zeugopod" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "zeugopod skeleton" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "zygopodium" RELATED [VSAO:0005010] +xref: VSAO:0005010 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010712 ! limb skeleton subdivision +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0002471 ! zeugopod +relationship: part_of UBERON:0002471 ! zeugopod +relationship: part_of UBERON:0004381 {source="VSAO"} ! skeleton of limb +relationship: proximally_connected_to UBERON:0011583 ! stylopodial skeleton +relationship: skeleton_of UBERON:0002471 ! zeugopod + +[Term] +id: UBERON:0011585 +name: cell condensation +def: "Anatomical structure that is an aggregation of similar cells from which cartilages and bones form, and from which chondrogenesis and osteogenesis are initiated during repair and/or regeneration. (Hall and Miyake 1995)." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000006] +xref: VSAO:0000006 +xref: XAO:0004021 +is_a: UBERON:0000061 {source="VSAO"} ! anatomical structure + +[Term] +id: UBERON:0011586 +name: obsolete proteinaceous extracellular matrix +comment: obsoleted as it was already present in GO +is_obsolete: true +consider: GO:0005578 +consider: VSAO:0000021 + +[Term] +id: UBERON:0011587 +name: pre-dentine +def: "Odontogenic tissue that is collagen-rich and characteristic of vertebrate teeth and tooth-like structures (e.g., odontodes) deposited by preodontoblasts and odontoblasts that are typically excluded from the matrix." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000071] +synonym: "pre-dentine tissue" EXACT [VSAO:curator] +synonym: "predentin" EXACT [PMCID:PMC3360947] +synonym: "predentine tissue" EXACT [VSAO:curator] +xref: EMAPA:36439 +xref: VSAO:0000071 +xref: XAO:0004052 +is_a: UBERON:0010365 {source="VSAO"} ! odontoid tissue + +[Term] +id: UBERON:0011588 +name: pre-enamel +def: "Odontogenic tissue that is avascular non-mineralized matrix that is deposited by preameloblast and ameloblasts that are excluded from the matrix." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000066] +synonym: "pre-enamel tissue" EXACT [VSAO:curator] +synonym: "preenamel tissue" EXACT [VSAO:curator] +xref: VSAO:0000066 +xref: XAO:0004202 +is_a: UBERON:0010365 {source="VSAO"} ! odontoid tissue + +[Term] +id: UBERON:0011589 +name: non-mineralized cartilage tissue +def: "Cartilage tissue that is not mineralized." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000089] +xref: VSAO:0000089 +xref: XAO:0004044 +is_a: UBERON:0002418 {source="VSAO"} ! cartilage tissue + +[Term] +id: UBERON:0011590 +name: commissure of diencephalon +def: "A commissure that is part of a diencephalon." [OBOL:automatic] +synonym: "diencephalon commissure" EXACT [FMA:62445] +xref: FMA:62445 +is_a: UBERON:0005970 ! brain commissure +is_a: UBERON:0011591 ! tract of diencephalon +intersection_of: UBERON:0001020 ! nervous system commissure +intersection_of: part_of UBERON:0001894 ! diencephalon + +[Term] +id: UBERON:0011591 +name: tract of diencephalon +def: "An axon tract that is part of a diencephalon." [OBOL:automatic] +synonym: "diencephalon tract" EXACT [FMA:62447] +xref: FMA:62447 +is_a: UBERON:0007702 ! tract of brain +intersection_of: UBERON:0001018 ! axon tract +intersection_of: part_of UBERON:0001894 ! diencephalon +relationship: part_of UBERON:0001894 ! diencephalon + +[Term] +id: UBERON:0011592 +name: future upper lip +synonym: "upper jaw future lip" EXACT [EHDAA2:0002120] +xref: EHDAA2:0002120 +is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0003235 ! epithelium of upper jaw +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0004068 {notes="fusion"} ! medial nasal prominence +relationship: develops_from UBERON:0005868 {notes="fusion"} ! maxillary prominence + +[Term] +id: UBERON:0011593 +name: maxillary tooth +def: "A tooth that is attached to a maxilla[TAO,modified]." [TAO:0001627] +synonym: "maxillary teeth" EXACT PLURAL [AAO:0000287] +xref: AAO:0000287 +xref: FMA:321646 +xref: http://www.snomedbrowser.com/Codes/Details/422279005 +xref: TAO:0001627 +xref: Tooth:(human) +is_a: UBERON:0003267 ! tooth of upper jaw +intersection_of: UBERON:0001091 ! calcareous tooth +intersection_of: attaches_to UBERON:0002397 ! maxilla +relationship: attaches_to UBERON:0002397 ! maxilla + +[Term] +id: UBERON:0011594 +name: dentary tooth +def: "Tooth that is attached to a dentary/mandible[TAO,modified]." [TAO:0001628] +synonym: "mandibular teeth" RELATED PLURAL [AAO:0000641] +synonym: "mandibular tooth" RELATED [] +synonym: "tooth of dentary" RELATED [] +xref: AAO:0000125 +xref: AAO:0000641 +xref: FMA:321647 +xref: http://www.snomedbrowser.com/Codes/Details/245547003 +xref: TAO:0001628 +is_a: UBERON:0003268 ! tooth of lower jaw +intersection_of: UBERON:0001091 ! calcareous tooth +intersection_of: attaches_to UBERON:0004742 ! dentary +relationship: attaches_to UBERON:0004742 ! dentary + +[Term] +id: UBERON:0011595 +name: jaw region +def: "A subdivision of the head that corresponds to the jaw skeleton, containing both soft tissue, skeleton and teeth (when present). The jaw region is divided into upper and lower regions." [http://orcid.org/0000-0002-6601-2165] +xref: EMAPA:32905 +xref: NCIT:C114916 +is_a: UBERON:0000475 ! organism subdivision +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000475 ! organism subdivision +intersection_of: has_skeleton UBERON:0001708 ! jaw skeleton +relationship: has_skeleton UBERON:0001708 ! jaw skeleton +relationship: part_of UBERON:0000165 {source="EMAPA", source="FMA-abduced", source="ZFA-abduced"} ! mouth + +[Term] +id: UBERON:0011596 +name: future lower lip +synonym: "lower jaw future lip" EXACT [EHDAA2:0001020] +xref: EHDAA2:0001020 +is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0003236 ! epithelium of lower jaw +relationship: develops_from UBERON:0005867 {source="Mandibular:prominence"} ! mandibular prominence + +[Term] +id: UBERON:0011597 +name: bone of upper jaw +def: "Any bone that is part of the upper jaw skeleton. This includes (when present): the maxilla, the quadrate (in some species)." [https://orcid.org/0000-0002-6601-2165] +subset: grouping_class +synonym: "upper jaw bone" EXACT [] +is_a: UBERON:0012360 ! bone of jaw +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0001709 ! upper jaw region +relationship: part_of UBERON:0003277 ! skeleton of upper jaw + +[Term] +id: UBERON:0011598 +name: coronoid bone +synonym: "coronoid process" BROAD [TAO:0001673] +xref: AAO:0000103 +xref: TAO:0001673 +is_a: UBERON:0004768 ! bone of lower jaw +is_a: UBERON:0008907 {source="AAO"} ! dermal bone +relationship: part_of UBERON:0003113 {notes="mandibular series", source="ISBN:0073040584"} ! dermatocranium + +[Term] +id: UBERON:0011599 +name: lenticular process of incus bone +def: "The long ventral process of the incus bone which articulates with the stapes" [http://palaeos.com/vertebrates/glossary/glossaryJL.html] +synonym: "incus crus longum" EXACT [http://palaeos.com] +synonym: "lenticular process" BROAD [] +synonym: "lenticular process of incus" EXACT [FMA:52775] +synonym: "processus lenticularis" BROAD [] +synonym: "processus lenticularis (incus)" EXACT [FMA:52775] +synonym: "processus lenticularis incudis" EXACT LATIN [FMA:52775, FMA:TA] +xref: FMA:52775 +xref: http://palaeos.com/vertebrates/bones/ear/images/Incus3.gif +xref: http://www.snomedbrowser.com/Codes/Details/368928003 +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: develops_from UBERON:0005689 ! 2nd arch mesenchyme +relationship: part_of UBERON:0001688 {source="FMA"} ! incus bone + +[Term] +id: UBERON:0011601 +name: gingiva of upper jaw +def: "A gingiva that is part of a upper jaw region." [OBOL:automatic] +subset: pheno_slim +synonym: "gum of maxilla" EXACT [] +synonym: "gum of upper jaw" EXACT [EMAPA:18970] +synonym: "maxillary gum" RELATED [FMA:59763] +synonym: "upper gingiva" EXACT [] +synonym: "upper gum" RELATED [] +synonym: "upper jaw gingiva" EXACT [FMA:59763] +xref: EMAPA:18970 +xref: FMA:59763 +xref: http://linkedlifedata.com/resource/umls/id/C0227121 +xref: http://www.snomedbrowser.com/Codes/Details/304703001 +xref: NCIT:C54205 +is_a: UBERON:0001828 ! gingiva +intersection_of: UBERON:0001828 ! gingiva +intersection_of: part_of UBERON:0001709 ! upper jaw region +relationship: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0011602 +name: gingiva of lower jaw +def: "A gingiva that is part of a lower jaw region." [OBOL:automatic] +subset: pheno_slim +synonym: "gum of lower jaw" EXACT [EMAPA:18967] +synonym: "gum of mandible" EXACT [] +synonym: "lower gingiva" EXACT [] +synonym: "lower gum" RELATED [] +synonym: "lower jaw gingiva" EXACT [FMA:59764] +synonym: "lower jaw gum" RELATED [FMA:59764] +synonym: "mandibular gum" RELATED [FMA:59764] +xref: EMAPA:18967 +xref: FMA:59764 +xref: http://linkedlifedata.com/resource/umls/id/C0227123 +xref: http://www.snomedbrowser.com/Codes/Details/304704007 +xref: NCIT:C54204 +is_a: UBERON:0001828 ! gingiva +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001828 ! gingiva +intersection_of: part_of UBERON:0001710 ! lower jaw region +relationship: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0011603 +name: coronoid tooth +def: "Tooth that is attached to a coronoid bone." [https://orcid.org/0000-0002-6601-2165] +synonym: "coronoid teeth" EXACT PLURAL [AAO:0000104] +xref: AAO:0000104 +is_a: UBERON:0003268 ! tooth of lower jaw +intersection_of: UBERON:0001091 ! calcareous tooth +intersection_of: attaches_to UBERON:0011598 ! coronoid bone +relationship: attaches_to UBERON:0011598 ! coronoid bone + +[Term] +id: UBERON:0011604 +name: carina of sternum +def: "An extension of the sternum (breastbone) which runs axially along the midline of the sternum and extends outward, perpendicular to the plane of the ribs[WP]." [http://en.wikipedia.org/wiki/Keel_(bird)] +synonym: "avian keel" RELATED [] +synonym: "carina" BROAD [] +synonym: "keel" BROAD [] +xref: Keel:(bird) +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0000975 ! sternum + +[Term] +id: UBERON:0011605 +name: supracoracoideus muscle of wing +def: "A muscle in the bird's thorax region that originates from carina of the sternum, furcula, and sternal ribs and inserts onto proximal dorsal surface of the humerus. It acts as a primary elevator of the wing in upstroke. [Manual of Ornithology: Avian Structure and Function, by Proctor and Lynch, 1998]." [http://en.wikipedia.org/wiki/Supracoracoideus#Muscular_system, ID:KFC0000604] +synonym: "pectoralis minor" RELATED [ID:KFC0000604] +is_a: UBERON:0001482 ! muscle of shoulder +is_a: UBERON:0008196 ! muscle of pectoral girdle +relationship: has_muscle_insertion UBERON:0000976 ! humerus +relationship: has_muscle_origin UBERON:0002228 ! rib +relationship: has_muscle_origin UBERON:0007841 ! furcula +relationship: has_muscle_origin UBERON:0011604 ! carina of sternum + +[Term] +id: UBERON:0011606 +name: hyomandibular bone +def: "Replacement bone that is bilaterally paired and (in teleosts) articulates with the neurocranium dorsally and the opercle posteriorly[TAO,modified]." [http://en.wikipedia.org/wiki/Hyomandibula, TAO:0000672] +subset: efo_slim +synonym: "hyomandibula" BROAD [TAO:0000672] +synonym: "hyomandibular" BROAD [http://en.wikipedia.org/wiki/Hyomandibula, TAO:0000672] +xref: EFO:0003556 +xref: http://en.wikipedia.org/wiki/Hyomandibula +xref: TAO:0000672 +xref: VHOG:0000688 +xref: ZFA:0000672 +is_a: UBERON:0002513 {source="TAO"} ! endochondral bone +is_a: UBERON:0011608 ! hyomandibular element +intersection_of: UBERON:0011608 ! hyomandibular element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0011607 {source="TAO"} ! hyomandibular cartilage + +[Term] +id: UBERON:0011607 +name: hyomandibular cartilage +def: "Cartilage form of the hyomandibular element." [https://orcid.org/0000-0002-6601-2165] +subset: efo_slim +synonym: "hyosymplectic cartilage" EXACT [ZFA:0001422] +synonym: "symplectic cartilage" EXACT [TAO:0001422] +xref: EFO:0003686 +xref: TAO:0001422 +xref: VHOG:0000688 +xref: ZFA:0001422 +is_a: UBERON:0011004 {source="TAO"} ! pharyngeal arch cartilage +is_a: UBERON:0011608 ! hyomandibular element +intersection_of: UBERON:0011608 ! hyomandibular element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0011608 +name: hyomandibular element +def: "The upper paired deep bone or cartilage of the hyoid region, sometimes taking part in jaw suspension and which supports the opercle. Dorsally it articulates with the otic capsule at the hyomandibular fossa, ventrally with the quadrate and symplectic. In most Teleostei it has a foramen for the hyomandibular branch of the facial nerve (VII)." [http://en.academic.ru/dic.nsf/en_ichthyology/8715/hyomandibula] +synonym: "epihyal" RELATED INCONSISTENT [http://palaeos.com/vertebrates/bones/gill_arches/gill_arches.html] +synonym: "hyomandibula" RELATED [] +synonym: "hyomandibula - stapes" EXACT [VHOG:0000688] +synonym: "hyomandibula element" EXACT [] +xref: TAO:0000672 +xref: VHOG:0000688 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton + +[Term] +id: UBERON:0011609 +name: ceratohyal element +synonym: "keratohyal element" RELATED [] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010522 ! replacement element +relationship: part_of UBERON:0011153 {source="TAO-abduced"} ! ventral hyoid arch skeleton + +[Term] +id: UBERON:0011610 +name: ceratohyal cartilage +xref: TAO:0001400 +xref: ZFA:0001400 +is_a: UBERON:0011004 {source="TAO"} ! pharyngeal arch cartilage +is_a: UBERON:0011609 ! ceratohyal element + +[Term] +id: UBERON:0011611 +name: ceratohyal bone +synonym: "anterior ceratohyal" EXACT [TAO:0000578] +synonym: "anterohyal" EXACT [TAO:0000578] +synonym: "anterohyals" RELATED PLURAL [TAO:0000578] +synonym: "ceratohyal" EXACT [TAO:0000578] +synonym: "ceratohyal anterior" EXACT [TAO:0000578] +synonym: "ceratohyal bone" EXACT [TAO:0000578] +synonym: "ceratohyale" RELATED [AAO:0000666] +synonym: "ceratohyals" RELATED PLURAL [TAO:0000578] +synonym: "ceratohyoid" NARROW SENSU [] +synonym: "ceratohyoid bone" EXACT [] +synonym: "distal ceratohyal" EXACT [TAO:0000578] +synonym: "hyale" RELATED [AAO:0000666] +synonym: "hyoid" RELATED [AAO:0000666] +synonym: "keratohyale" RELATED [AAO:0000666] +synonym: "rostral ceratohyal" EXACT [TAO:0000578] +synonym: "zungenbeinknorpel" RELATED [AAO:0000666] +xref: AAO:0000666 +xref: http://www.snomedbrowser.com/Codes/Details/370641002 +xref: TAO:0000578 +xref: ZFA:0000578 +is_a: UBERON:0002513 {source="TAO"} ! endochondral bone +is_a: UBERON:0011609 ! ceratohyal element +disjoint_from: UBERON:2000627 {source="lexical"} ! posterior ceratohyal +relationship: develops_from UBERON:0011610 {source="TAO"} ! ceratohyal cartilage + +[Term] +id: UBERON:0011612 +name: hypohyal cartilage +xref: TAO:0001868 +is_a: UBERON:0011004 {source="TAO"} ! pharyngeal arch cartilage +is_a: UBERON:0011613 ! hypohyal element + +[Term] +id: UBERON:0011613 +name: hypohyal element +def: "The hypohyal is a ventral element of the hyoid arch which links the ceratohyal and the basihyal." [http://palaeos.com/vertebrates/bones/gill_arches/hypohyal.html] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010522 ! replacement element +relationship: part_of UBERON:0011153 {source="TAO-abduced"} ! ventral hyoid arch skeleton + +[Term] +id: UBERON:0011614 +name: basihyal element +def: "Skeletal element that is median and is the anterior-most element of the ventral hyoid arch." [TAO:0001891] +xref: TAO:0001891 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0011153 {source="TAO"} ! ventral hyoid arch skeleton + +[Term] +id: UBERON:0011615 +name: basihyal cartilage +def: "Pharyngeal arch cartilage that is median and is the anterior-most cartilage of the ventral hyoid arch." [TAO:0001510] +synonym: "copula 1" RELATED [TAO:0001510] +xref: TAO:0001510 +xref: ZFA:0001510 +is_a: UBERON:0011004 {source="TAO"} ! pharyngeal arch cartilage +is_a: UBERON:0011614 ! basihyal element +intersection_of: UBERON:0011614 ! basihyal element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0011618 +name: basihyal bone +def: "Replacement bone that is median and is the anterior-most bone of the ventral hyoid arch." [TAO:0000316] +synonym: "basihyoid" EXACT [TAO:0000316] +synonym: "glossohyal" EXACT [TAO:0000316] +xref: TAO:0000316 +xref: VSAO_RETIRED:0000007 +xref: ZFA:0000316 +is_a: UBERON:0002513 {source="TAO"} ! endochondral bone +is_a: UBERON:0011614 ! basihyal element +intersection_of: UBERON:0011614 ! basihyal element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0011615 {source="TAO"} ! basihyal cartilage + +[Term] +id: UBERON:0011619 +name: stylohyoid bone +def: "This is the paired bone that makes up the segment of the mammalian hyoid apparatus connecting the epihyoids with the skull via the tympanohyoid cartilages on each side. Ventrally, it defines the medial and lateral compartments of the guttural pouch in the horse." [MURDOCH:1758] +xref: http://www.snomedbrowser.com/Codes/Details/370715004 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0010272 ! hyoid apparatus + +[Term] +id: UBERON:0011620 +name: basihyal lingual process +def: "A projection on the basihyal bone. Laterally the lingual process is compressed. It has a blunt pointed free end, and its lateral surfaces are slightly concave. The dorsal border is thin and irregular, and the ventral border is thick and rough. In the living animal the lingual process is embedded within the root of the tongue." [MURDOCH:1080] +synonym: "lingual process of basihyoid" EXACT [] +synonym: "lingual process of basihyoid bone" EXACT [] +synonym: "lingual process of hyoid" RELATED [] +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0011618 ! basihyal bone + +[Term] +id: UBERON:0011621 +name: thyrohyoid cartilage +def: "This small finger of cartilage completes the connection between the thyrohyoid bone and the thyroid cartilage (rostral cornu)" [MURDOCH:2033] +is_a: UBERON:0011004 ! pharyngeal arch cartilage +relationship: connects UBERON:0011622 ! thyrohyoid bone +relationship: connects UBERON:0011623 ! horn of thyroid cartilage +relationship: part_of UBERON:0010272 ! hyoid apparatus + +[Term] +id: UBERON:0011622 +name: thyrohyoid bone +def: "Is a laterally bowed, sagittally compressed, slender element that extends from dorsocaudally from the lateral parts of the basihyoid. It connects the basiohyoid with the rostral corner of the thyroid cartlilage of the larynx." [MURDOCH:1951] +xref: http://www.snomedbrowser.com/Codes/Details/370708007 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: connects UBERON:0011618 ! basihyal bone +relationship: connects UBERON:0011623 ! horn of thyroid cartilage +relationship: part_of UBERON:0010272 ! hyoid apparatus + +[Term] +id: UBERON:0011623 +name: horn of thyroid cartilage +synonym: "cornu of thyroid cartilage" EXACT [FMA:55300] +synonym: "thyroid cartilage horn" EXACT [FMA:55300] +xref: FMA:55300 +xref: http://www.snomedbrowser.com/Codes/Details/279518009 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004765 ! skeletal element +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001738 ! thyroid cartilage + +[Term] +id: UBERON:0011624 +name: superior horn of thyroid cartilage +def: "The superior horn of thyroid cartilage is long and narrow, directed upward, backward, and medialward, and ends in a conical extremity, which gives attachment to the lateral hyothyroid ligament." [http://en.wikipedia.org/wiki/Superior_horn_of_thyroid_cartilage] +synonym: "cornu superius (cartilago thyroidea)" EXACT [FMA:55294] +synonym: "cornu superius cartilaginis thyroideae" EXACT LATIN [] +synonym: "superior cornu of thyroid cartilage" EXACT [FMA:55294] +xref: FMA:55294 +xref: http://en.wikipedia.org/wiki/Superior_horn_of_thyroid_cartilage +xref: http://www.snomedbrowser.com/Codes/Details/279520007 +is_a: UBERON:0011623 {source="FMA"} ! horn of thyroid cartilage + +[Term] +id: UBERON:0011625 +name: inferior horn of thyroid cartilage +def: "The inferior horn of thyroid cartilage is short and thick; it is directed downward, with a slight inclination forward and medialward, and presents, on the medial side of its tip, a small oval articular facet for articulation with the side of the cricoid cartilage." [http://en.wikipedia.org/wiki/Inferior_horn_of_thyroid_cartilage] +synonym: "cornu inferius (cartilago thyroidea)" EXACT [FMA:55297] +synonym: "cornu inferius cartilaginis thyroidea" EXACT LATIN [FMA:55297, FMA:TA] +synonym: "cornu inferius cartilaginis thyroideae" EXACT LATIN [] +xref: FMA:55297 +xref: http://en.wikipedia.org/wiki/Inferior_horn_of_thyroid_cartilage +xref: http://www.snomedbrowser.com/Codes/Details/279521006 +is_a: UBERON:0011623 {source="FMA"} ! horn of thyroid cartilage + +[Term] +id: UBERON:0011626 +name: tympanohyoid cartilage +def: "The terminal segment in the chain of skeletal elements of the hyoid apparatus. One of a pair of rods of cartilage that connect the hyoid bone to the styloid process of the petrous part of the temporal bone" [http://medical-dictionary.thefreedictionary.com/tympanohyoid] +xref: http://www.snomedbrowser.com/Codes/Details/370702008 +is_a: UBERON:0011004 ! pharyngeal arch cartilage +relationship: connects UBERON:0001685 ! hyoid bone +relationship: connects UBERON:0003960 ! styloid process of temporal bone +relationship: part_of UBERON:0010272 ! hyoid apparatus + +[Term] +id: UBERON:0011627 +name: orbital part of frontal bone +def: "A zone of the frontal bone that consists of two thin triangular plates, the orbital plates, which form the vaults of the orbits, and are separated from one another by a median gap, the ethmoidal notch." [http://en.wikipedia.org/wiki/Orbital_part_of_frontal_bone] +synonym: "pars orbitalis" RELATED [http://en.wikipedia.org/wiki/Orbital_part_of_frontal_bone] +synonym: "pars orbitalis (os frontale)" EXACT [FMA:52849] +synonym: "pars orbitalis ossis frontalis" EXACT LATIN [http://en.wikipedia.org/wiki/Orbital_part_of_frontal_bone] +xref: FMA:52849 +xref: http://en.wikipedia.org/wiki/Orbital_part_of_frontal_bone +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0002517 {source="FMA-abduced-lr"} ! basicranium +relationship: part_of UBERON:0000209 ! tetrapod frontal bone +relationship: part_of UBERON:0002517 {source="FMA"} ! basicranium + +[Term] +id: UBERON:0011628 +name: early premaxilla +synonym: "future premaxilla" EXACT [] +xref: EHDAA2:0001495 +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0011597 ! bone of upper jaw +relationship: develops_from UBERON:0010334 {source="EHDAA2"} ! maxillary process mesenchyme from neural crest +relationship: part_of UBERON:0000922 ! embryo +relationship: part_of UBERON:0003113 {source="ISBN:0073040584"} ! dermatocranium + +[Term] +id: UBERON:0011629 +name: supratemporal bone +synonym: "supratemporal" EXACT [] +is_a: UBERON:0002514 ! intramembranous bone +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:0003113 {notes="temporal series", source="ISBN:0073040584"} ! dermatocranium + +[Term] +id: UBERON:0011630 +name: intertemporal bone +synonym: "intertemporal" EXACT [] +is_a: UBERON:0002514 ! intramembranous bone +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:0003113 {notes="temporal series", source="ISBN:0073040584"} ! dermatocranium + +[Term] +id: UBERON:0011631 +name: tabular bone +synonym: "tabular" EXACT [] +is_a: UBERON:0002514 ! intramembranous bone +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:0003113 {notes="temporal series", source="ISBN:0073040584"} ! dermatocranium + +[Term] +id: UBERON:0011634 +name: ectopterygoid bone +def: "A palatal bone which -- like many palatal bones -- may originally have developed as a dermal bone replacing part of the palatoquadrate, the primitive upper jaw. Like the palatine (also called dermopalatine), the ectopterygoid replaces the middle part of the autopalatine. It may be serially homologous with the palatine(s), but is somewhat specialized, being the last (most posterior in palatal view) of the series and bordering the fossa for the jaw muscles. In a typical tetrapod it abuts the palatine anteriorly, the maxilla laterally, the pterygoid or the fossa mandubuaris medially, and the fossa posteriorly" [http://palaeos.com/vertebrates/glossary/glossaryE.html] +subset: efo_slim +synonym: "ectopterygoid" EXACT [TAO:0000656] +synonym: "ectopterygoids" RELATED PLURAL [ZFA:0000656] +xref: EFO:0003552 +xref: TAO:0000656 +xref: ZFA:0000656 +is_a: UBERON:0011597 ! bone of upper jaw +is_a: UBERON:0012071 ! palate bone +relationship: serially_homologous_to UBERON:0001682 {notes="may be serially homologous with the palatines", source="http://palaeos.com/vertebrates/bones/dermal/palatal-palatines.html"} ! palatine bone + +[Term] +id: UBERON:0011635 +name: splenial bone +def: "The splenial is a small bone in the lower jaw of reptiles, amphibians and birds, usually located on the lingual side (closest to the tongue) between the angular and suprangular." [http://en.wikipedia.org/wiki/Splenial] +synonym: "splenial" EXACT [AAO:0000573] +xref: AAO:0000573 +xref: http://en.wikipedia.org/wiki/Splenial +xref: http://palaeos.com/vertebrates/bones/dermal/images/Dentary1.gif +is_a: UBERON:0004768 ! bone of lower jaw +is_a: UBERON:0008907 {source="AAO"} ! dermal bone +relationship: part_of UBERON:0003113 {notes="mandibular series", source="ISBN:0073040584"} ! dermatocranium + +[Term] +id: UBERON:0011636 +name: surangular bone +def: "The surangular is a dermal bone of the lower jaw. It typically covers much of the dorsal and lateral surface of the posterior jaw and variably extends onto the medial (inside) surface. The surangular articulates with and supports the articular, which forms the jaw joint with the quadrate in most vertebrates, and is in turn supported by the angular. More distally, the surangular bridges the mandibular fenestra, if one is present. It may also bear a raised dorsal coronoid process, an important attachment site for the mandibular adductors. At its distal (or rostral) end, the surangular meets the dentary, the main tooth-bearing bone of the lower jaw in most vertebrates." [http://palaeos.com/vertebrates/bones/dermal/mandibular-surangular.html] +synonym: "supra-angular" RELATED [https://github.com/obophenotype/uberon/issues/164] +synonym: "supra-angular bone" RELATED [https://github.com/obophenotype/uberon/issues/164] +synonym: "supraangular" RELATED [https://github.com/obophenotype/uberon/issues/164] +synonym: "supraangular bone" RELATED [https://github.com/obophenotype/uberon/issues/164] +synonym: "suprangular" RELATED [http://en.wikipedia.org/wiki/Suprangular, https://github.com/obophenotype/uberon/issues/164] +synonym: "suprangular bone" RELATED [https://github.com/obophenotype/uberon/issues/164] +synonym: "surangular" EXACT [TAO:0002287] +xref: http://palaeos.com/vertebrates/bones/dermal/images/Dentary1.gif +xref: http://palaeos.com/vertebrates/bones/dermal/images/Surangular1.gif +xref: TAO:0002287 +is_a: UBERON:0004768 ! bone of lower jaw +is_a: UBERON:0008907 {source="Palaeos", source="TAO"} ! dermal bone +relationship: connected_to UBERON:0004744 ! articular/anguloarticular +relationship: part_of UBERON:0003113 {notes="mandibular series", source="ISBN:0073040584"} ! dermatocranium + +[Term] +id: UBERON:0011637 +name: prearticular bone +def: "Osseous element of intramembranous origin that extends along the lingual margin of Meckel's cartilage." [AAO:0000458] +synonym: "prearticular" EXACT [AAO:0000458] +xref: AAO:0000458 +xref: http://palaeos.com/vertebrates/bones/dermal/images/Dentary1.gif +is_a: UBERON:0004768 ! bone of lower jaw +is_a: UBERON:0008907 {source="AAO"} ! dermal bone +relationship: part_of UBERON:0003113 {notes="mandibular series", source="ISBN:0073040584"} ! dermatocranium + +[Term] +id: UBERON:0011638 +name: pharyngeal arch 8 +synonym: "branchial arch 6" RELATED [] +synonym: "gill arch 6" EXACT [] +synonym: "visceral arch 8" EXACT [] +is_a: UBERON:0008896 {source="TAO"} ! post-hyoid pharyngeal arch + +[Term] +id: UBERON:0011639 +name: frontoparietal bone +def: "An anuran dermal bone that usually is paired and roofs the braincase." [AAO:0000207] +synonym: "fronto-parietaux" RELATED [AAO:0000207] +synonym: "frontoparietal" EXACT [AAO:0000207] +synonym: "os fronto-parietale" RELATED [AAO:0000207] +synonym: "parietaux" RELATED [AAO:0000207] +synonym: "parietofrontal" RELATED [AAO:0000207] +xref: AAO:0000207 +is_a: UBERON:0008907 {source="AAO"} ! dermal bone +relationship: has_fused_element UBERON:0000209 ! tetrapod frontal bone +relationship: has_fused_element UBERON:0000210 ! tetrapod parietal bone +relationship: part_of UBERON:0003113 {notes="orbital series", source="ISBN:0073040584"} ! dermatocranium + +[Term] +id: UBERON:0011640 +name: palatoglossal arch +def: "A fold that lies between the mouth and pharynx and marks the posterior border of the mouth" [http://en.wikipedia.org/wiki/Palatoglossal_arch, ISBN:0073040584] +synonym: "anterior pillar of fauces" EXACT [FMA:55024] +synonym: "arcus glossopalatinus" EXACT [http://en.wikipedia.org/wiki/Palatoglossal_arch] +synonym: "arcus palatoglossus" EXACT [http://en.wikipedia.org/wiki/Palatoglossal_arch] +synonym: "glossopalatine arch" EXACT [FMA:55024] +synonym: "plica anterior faucium" EXACT LATIN [FMA:TA] +xref: FMA:55024 +xref: http://www.snomedbrowser.com/Codes/Details/276958001 +xref: Palatoglossal:arch +is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster +relationship: adjacent_to UBERON:0000165 ! mouth +relationship: adjacent_to UBERON:0001042 ! chordate pharynx +relationship: part_of UBERON:0001555 ! digestive tract + +[Term] +id: UBERON:0011641 +name: odontogenic mesenchyme of molar +def: "An odontogenic papilla that is part of a molar tooth [Automatically generated definition]." [OBOL:automatic] +synonym: "molar mesenchyme" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "odontogenic mesenchyme of molar tooth" EXACT [OBOL:automatic] +xref: EMAPA:32881 +xref: MA:0003230 +is_a: UBERON:0003856 ! uncondensed odontogenic mesenchyme +intersection_of: UBERON:0003856 ! uncondensed odontogenic mesenchyme +intersection_of: part_of UBERON:0003655 ! molar tooth +relationship: part_of UBERON:0003655 ! molar tooth + +[Term] +id: UBERON:0011642 +name: oral epithelium from ectoderm +def: "An epithelium that develops_from a ectoderm and is part of a oral epithelium." [OBOL:automatic] +xref: EHDAA2:0004137 +is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0002424 ! oral epithelium +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: develops_from UBERON:0000924 ! ectoderm +intersection_of: part_of UBERON:0002424 ! oral epithelium +relationship: develops_from UBERON:0009479 {source="EHDAA2"} ! ectoderm of buccopharyngeal membrane + +[Term] +id: UBERON:0011643 +name: puboischiofemoralis internus muscle +alt_id: UBERON:0014843 +def: "A single large dorsal limb rotator muscle in lower tetrapods that runs from the lumber region and girdle to the femur." [ISBN:0073040584] +synonym: "puboischiofemoralis internus" EXACT [] +is_a: UBERON:0004518 ! muscle of vertebral column +is_a: UBERON:0014842 ! puboischiofemoralis muscle +relationship: has_muscle_origin UBERON:0002414 {source="ISBN:0073040584"} ! lumbar vertebra + +[Term] +id: UBERON:0011644 +name: puboischiofemoralis externus muscle +alt_id: UBERON:0014844 +def: "A single large ventral muscle in lower tetrapods that runs from the pubis and ischium to the femur." [ISBN:0073040584] +synonym: "puboischiofemoralis externus" EXACT [] +is_a: UBERON:0014842 ! puboischiofemoralis muscle +relationship: has_muscle_origin UBERON:0001274 ! ischium +relationship: has_muscle_origin UBERON:0001275 ! pubis + +[Term] +id: UBERON:0011645 +name: iliofemoralis muscle +def: "Limb extensor that runs from ilium to femur." [ISBN:0073040584] +synonym: "iliofemoralis" EXACT [] +is_a: UBERON:0001325 ! muscle of pelvis +intersection_of: UBERON:0001325 ! muscle of pelvis +intersection_of: has_muscle_insertion UBERON:0000981 ! femur +intersection_of: has_muscle_origin UBERON:0001273 ! ilium +relationship: has_muscle_insertion UBERON:0000981 ! femur +relationship: has_muscle_origin UBERON:0001273 ! ilium + +[Term] +id: UBERON:0011646 +name: patagialis muscle +def: "A muscle of the patagium that attaches to the clavicle and the metacarpal" [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0008196 ! muscle of pectoral girdle +relationship: has_muscle_insertion UBERON:0002374 ! metacarpal bone +relationship: has_muscle_origin UBERON:0001105 ! clavicle bone +relationship: part_of UBERON:0010856 ! patagium + +[Term] +id: UBERON:0011647 +name: depressor mandibulae muscle +synonym: "depressor labi mandibularis" EXACT [] +synonym: "depressor labi mandibularis muscle" EXACT [] +synonym: "depressor mandibulae" EXACT [AAO:0010715] +xref: AAO:0010715 +xref: VHOG:0000813 +is_a: UBERON:0001577 ! facial muscle +is_a: UBERON:0011648 {source="AAO"} ! jaw muscle + +[Term] +id: UBERON:0011648 +name: jaw muscle +subset: efo_slim +subset: pheno_slim +synonym: "mandibular muscle" EXACT [TAO:0000236] +synonym: "mandibular muscles" EXACT PLURAL [TAO:0000236] +xref: AAO:0000247 +xref: EFO:0003511 +xref: TAO:0000236 +xref: XAO:0003269 +xref: ZFA:0000236 +is_a: UBERON:0002376 ! cranial muscle + +[Term] +id: UBERON:0011649 +name: levator operculi +def: "Hyoid muscle that originates at the ventrolateral margin of the pterotic and inserts in the dorsomesial edge of the opercle. The levator operculi is responible for jaw depression, its force of contraction is transmitted through the opercular series and the interoperculo-mandibular ligament to the lower jaw." [ZFA:0000537] +synonym: "levator operculae" EXACT [ZFA:0000537] +synonym: "levator operculi muscle" EXACT [] +xref: TAO:0000537 +xref: VHOG:0000813 +xref: ZFA:0000537 +is_a: UBERON:0005493 {source="ZFA"} ! hyoid muscle +relationship: develops_from UBERON:0003066 {source="ISBN:0073040584"} ! pharyngeal arch 2 +relationship: has_muscle_insertion UBERON:2000250 {source="Kardong"} ! opercle +relationship: innervated_by UBERON:0001647 {source="ISBN:0073040584"} ! facial nerve + +[Term] +id: UBERON:0011650 +name: epihyoidean +comment: Muscle in sharks that is homologous to levator operculi and depressor mandibulae / stapedius +xref: VHOG:0000813 +is_a: UBERON:0005493 ! hyoid muscle +relationship: develops_from UBERON:0003066 {source="ISBN:0073040584"} ! pharyngeal arch 2 +relationship: innervated_by UBERON:0001647 {source="ISBN:0073040584"} ! facial nerve + +[Term] +id: UBERON:0011651 +name: ventral head of rib +def: "Ventral head of a bicapitate rib. It articulates with the parapophysis[AAO]." [AAO:0000723] +synonym: "capitulum" NARROW [] +synonym: "capitulum of costa" EXACT [] +synonym: "capitulum of rib" EXACT [AAO:0000723] +synonym: "costal capitulum" EXACT [] +xref: AAO:0000723 +is_a: UBERON:0002230 ! head of rib +intersection_of: UBERON:0002230 ! head of rib +intersection_of: connected_to UBERON:0003109 ! parapophysis +relationship: connected_to UBERON:0003109 ! parapophysis + +[Term] +id: UBERON:0011652 +name: dorsal head of rib +def: "Dorsal head of a bicapitate rib. It articulates with the diapophysis[AAO]." [AAO:0000722] +synonym: "tuberculum" BROAD [AAO:0000722] +synonym: "tuberculum of rib" EXACT [] +xref: AAO:0000722 +xref: EMAPA:37734 {source="MA:th"} +xref: MA:0001414 +is_a: UBERON:0002230 ! head of rib +intersection_of: UBERON:0002230 ! head of rib +intersection_of: connected_to UBERON:0011653 ! diapophysis of neural arch +relationship: connected_to UBERON:0011653 ! diapophysis of neural arch + +[Term] +id: UBERON:0011653 +name: diapophysis of neural arch +def: "Paired processes that arise near the midpoint of the neural arch lamina, for the attachment of the tuberculum of two-headed ribs. Also called transverse processes. In anurans, the term diapophysis is used in reference to the modified transverse processes of the sacral vertebra elaborated for support of the pelvic girdle." [AAO:0000706] +synonym: "diapophysis" BROAD [AAO:0000706] +synonym: "transverse process" BROAD [AAO:0000706] +xref: AAO:0000706 +is_a: UBERON:4100000 ! skeletal element projection +relationship: connected_to UBERON:0011652 ! dorsal head of rib +relationship: part_of UBERON:0003861 {source="ISBN:0073040584"} ! neural arch + +[Term] +id: UBERON:0011655 +name: interclavicle +def: "Dermal bone of pectoral girdle that is median and ventral in position." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000161] +synonym: "interclavicle bone" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: http://en.wikipedia.org/wiki/Interclavicle +xref: VSAO:0000161 +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0008907 {source="VSAO"} ! dermal bone +relationship: present_in_taxon NCBITaxon:9257 + +[Term] +id: UBERON:0011657 +name: dermal element of plastron +def: "Fused ventral dermal element constituting the plastron." [ISBN:0073040584] +synonym: "plastral plate" RELATED [ISBN:0073040584] +synonym: "plastron element" EXACT [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:0008276 ! plastron + +[Term] +id: UBERON:0011658 +name: epiplastron +def: "Paired dermal bone that is part of the anterior region of the plastron. The epiplastron is found only in turtles. [PHENOSCAPE:ad]." [ISBN:0073040584, PHENOSCAPE:ad, PHENOSCAPE:mah] +comment: Derived ancestrally from the clavicle. +synonym: "clavicle" RELATED [ISBN:0073040584] +is_a: UBERON:0011657 ! dermal element of plastron +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0008276 ! plastron + +[Term] +id: UBERON:0011659 +name: entoplastron +def: "A median bone at the anterior margin of the plastron." [ISBN:0073040584] +synonym: "interclavicle" RELATED [ISBN:0073040584] +is_a: UBERON:0011657 ! dermal element of plastron +relationship: has_fused_element UBERON:0001105 ! clavicle bone +relationship: intersects_midsagittal_plane_of UBERON:0008276 ! plastron + +[Term] +id: UBERON:0011660 +name: hypoplastron +def: "A paired plastron element that is in the posterior part of the plastron, anterior to the xiphiplastron and posterior to the hyoplastron" [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0011657 ! dermal element of plastron +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0008276 ! plastron + +[Term] +id: UBERON:0011661 +name: xiphiplastron +def: "A paired plastron element that is in the posterior part of the plastron, posterior to the hypoplastron" [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0011657 ! dermal element of plastron +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0008276 ! plastron + +[Term] +id: UBERON:0011662 +name: plastron-carapace bridge +is_a: UBERON:0000075 ! subdivision of skeletal system +relationship: connected_to UBERON:0008275 ! carapace +relationship: part_of UBERON:0008276 ! plastron + +[Term] +id: UBERON:0011663 +name: anterior plastron-carapace bridge +synonym: "anterior bridge struct" RELATED [] +is_a: UBERON:0011662 ! plastron-carapace bridge +disjoint_from: UBERON:0011664 {source="lexical"} ! posterior plastron-carapace bridge + +[Term] +id: UBERON:0011664 +name: posterior plastron-carapace bridge +synonym: "posterior bridge struct" RELATED [] +is_a: UBERON:0011662 ! plastron-carapace bridge + +[Term] +id: UBERON:0011665 +name: carapace bone +def: "Fused dorsal element constituting the carapace of a turtle shell." [ISBN:0073040584] +comment: The carapace contains a mix of dermal bone and rib cage +synonym: "carapace plate" RELATED [] +is_a: UBERON:0004247 ! bone of dorsum +relationship: part_of UBERON:0008275 ! carapace + +[Term] +id: UBERON:0011666 +name: peripheral plate of carapace +def: "One of a series of bones around the edge of the carapace." [ISBN:0073040584] +synonym: "marginal plate of carapace" RELATED [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0011665 ! carapace bone + +[Term] +id: UBERON:0011667 +name: pleural plate of carapace +def: "One of eight pairs of plates on the carapace, forming two rows adjacent to the peripheral plates." [ISBN:0073040584] +synonym: "lateral plate of carapace" RELATED [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0011665 ! carapace bone +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0008275 ! carapace + +[Term] +id: UBERON:0011668 +name: obsolete nuchal plate of carapace +is_obsolete: true +replaced_by: UBERON:0011671 + +[Term] +id: UBERON:0011669 +name: neural plate of carapace +def: "One of a series of plates on the dorsal midline of the turtle shell, posterior to the nuchal bone." [ISBN:0073040584] +synonym: "neural plate" BROAD [] +synonym: "vertebral plate of carapace" BROAD [] +is_a: UBERON:0011665 ! carapace bone +relationship: intersects_midsagittal_plane_of UBERON:0008275 ! carapace + +[Term] +id: UBERON:0011670 +name: pygal plate of carapace +def: "One of three plates on the posterior end of the carapace, posterior to the neural plates." [ISBN:0073040584] +is_a: UBERON:0011665 ! carapace bone + +[Term] +id: UBERON:0011671 +name: nuchal plate of carapace +def: "The anteriormost plate of the carapace." [http://orcid.org/0000-0002-6601-2165, ISBN:0073040584] +is_a: UBERON:0011665 ! carapace bone + +[Term] +id: UBERON:0011672 +name: suprapygal plate of carapace +def: "A plate that lies between the posteriormost neural plate and the pygal plate." [http://orcid.org/0000-0002-6601-2165, ISBN:0073040584] +synonym: "suprapygal bone" EXACT [] +synonym: "suprapygal plate" EXACT [] +is_a: UBERON:0011665 ! carapace bone +relationship: intersects_midsagittal_plane_of UBERON:0008275 ! carapace + +[Term] +id: UBERON:0011673 +name: plastron scute +def: "A scute that is part of a plastron." [OBOL:automatic] +is_a: UBERON:0008201 ! scute +intersection_of: UBERON:0008201 ! scute +intersection_of: part_of UBERON:0008276 ! plastron +relationship: part_of UBERON:0008276 ! plastron + +[Term] +id: UBERON:0011674 +name: carapace scute +def: "A scute that is part of a carapace." [OBOL:automatic] +is_a: UBERON:0018317 ! dorsal osteoderm +intersection_of: UBERON:0008201 ! scute +intersection_of: part_of UBERON:0008275 ! carapace +relationship: part_of UBERON:0008275 ! carapace + +[Term] +id: UBERON:0011675 +name: perichordal ring +def: "Enlarged section of perichordal tube that is arranged serially but out of phase with segmental musculature." [ISBN:0073040584] +xref: AAO:0000738 +is_a: UBERON:0002384 ! connective tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0007862 {source="AAO"} ! perichordal tissue + +[Term] +id: UBERON:0011676 +name: subdivision of organism along main body axis +def: "A major subdivision of an organism that divides an organism along its main body axis (typically anterio-posterior axis). In vertebrates, this is based on the vertebral column." [https://orcid.org/0000-0002-6601-2165] +subset: upper_level +synonym: "axial subdivision of organism" EXACT [] +synonym: "body segment" RELATED [] +synonym: "main body segment" RELATED [] +is_a: UBERON:0000475 ! organism subdivision +relationship: part_of UBERON:0013701 ! main body axis + +[Term] +id: UBERON:0011677 +name: trunk vertebra +def: "A vertebra in the trunk region. For tetrapods, includes lumbar and thoracic vertebrae. Excludes caudal/coccygeal vertebra, which are located posteriorly. In tetrapods this includes thoracic, lumbar and sacral vertebrae, and excludes the cervical vertebrae, which are located anteriorly." [UBERONREF:0000006] +subset: pheno_slim +synonym: "presacral vertebra" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "thoracolumbar vertebra" EXACT [] +is_a: UBERON:0003463 ! trunk bone +is_a: UBERON:0004247 ! bone of dorsum +is_a: UBERON:0004451 {is_inferred="true"} ! trunk or cervical vertebra +intersection_of: UBERON:0002412 ! vertebra +intersection_of: part_of UBERON:0009568 ! trunk region of vertebral column +relationship: fma_set_term FMA:72066 +relationship: part_of UBERON:0009568 ! trunk region of vertebral column + +[Term] +id: UBERON:0011678 +name: hindlimb intermedium bone +def: "A proximal tarsal bone that articulates with the fibula." [http://orcid.org/0000-0002-6601-2165] +synonym: "hidlimb intermedium" EXACT [] +synonym: "intermedium" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "intermedium (hind)" EXACT [AAO:0000923] +synonym: "intermedium of pes" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal intermedium" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: AAO:0000923 +is_a: UBERON:0011679 ! proximal tarsal bone + +[Term] +id: UBERON:0011679 +name: proximal tarsal bone +def: "A tarsal bone that connected_to a hindlimb zeugopod skeleton." [OBOL:automatic] +is_a: UBERON:0001447 ! tarsal bone +is_a: UBERON:0014395 ! proximal mesopodial bone +is_a: UBERON:0015081 ! proximal tarsal endochondral element +intersection_of: UBERON:0015081 ! proximal tarsal endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015082 ! proximal tarsal cartilage + +[Term] +id: UBERON:0011683 +name: adductor mandibulae +def: "An adductor muscle that acts on the jaw. In some species, this is subdivided into segments based on attachment." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/266] +subset: efo_slim +synonym: "adductor mandibulae complex" RELATED INCONSISTENT [EFO:0000227] +synonym: "dorsal adductor mandibulae" EXACT [ZFA:0007049] +synonym: "levator mandibulae" RELATED [] +synonym: "m. adductor mandibulae" EXACT [] +xref: EFO:0000227 +xref: TAO:0007049 +xref: ZFA:0007049 +is_a: UBERON:0011145 ! adductor muscle +is_a: UBERON:0011648 {source="ZFA"} ! jaw muscle +is_a: UBERON:0018544 ! trigeminal nerve muscle +relationship: attaches_to UBERON:0001708 ! jaw skeleton +relationship: innervated_by UBERON:0000375 {source="ISBN:0073040584"} ! mandibular nerve + +[Term] +id: UBERON:0011684 +name: levator palatoquadrati +def: "A muscle derivative of the mandibular levator that runs from the chondrocranium to the palatoquadrate cartilage. Found in sharks" [ISBN:0073040584] +is_a: UBERON:0011648 {source="ISBN:0073040584"} ! jaw muscle +is_a: UBERON:0018544 ! trigeminal nerve muscle +relationship: innervated_by UBERON:0000375 {source="ISBN:0073040584"} ! mandibular nerve +relationship: present_in_taxon NCBITaxon:119203 + +[Term] +id: UBERON:0011685 +name: preorbitalis muscle +def: "A jaw muscle arises near the orbit and tapers as it passes posteriorly to its insertion on the adductor mandibulae. Found in sharks." [ISBN:0073040584] +synonym: "preorbitalis" EXACT [] +is_a: UBERON:0011648 {source="ISBN:0073040584"} ! jaw muscle +is_a: UBERON:0018544 ! trigeminal nerve muscle +relationship: innervated_by UBERON:0000375 {source="ISBN:0073040584"} ! mandibular nerve +relationship: part_of UBERON:0011683 {source="ISBN:0073040584"} ! adductor mandibulae +relationship: present_in_taxon NCBITaxon:119203 + +[Term] +id: UBERON:0011686 +name: spiracularis muscle +synonym: "spiracularis" EXACT [] +is_a: UBERON:0011648 {source="ISBN:0073040584"} ! jaw muscle +is_a: UBERON:0018544 ! trigeminal nerve muscle +relationship: innervated_by UBERON:0000375 {source="ISBN:0073040584"} ! mandibular nerve +relationship: present_in_taxon NCBITaxon:7777 {source="Kardong"} + +[Term] +id: UBERON:0011687 +name: levator hyomandibulae muscle +synonym: "levator hyomandibulae" EXACT [] +is_a: UBERON:0005493 ! hyoid muscle +relationship: develops_from UBERON:0003066 {source="ISBN:0073040584"} ! pharyngeal arch 2 +relationship: innervated_by UBERON:0001647 {source="ISBN:0073040584"} ! facial nerve + +[Term] +id: UBERON:0011688 +name: pre-enameloid +def: "Odontoid tissue that is avascular non-mineralized matrix that is deposited by odontoblasts and ameloblasts that are excluded from the matrix." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000114] +synonym: "non-mineralized enameloid tissue" EXACT [VSAO:curator] +xref: VSAO:0000114 +xref: XAO:0004203 +is_a: UBERON:0010365 {source="VSAO"} ! odontoid tissue + +[Term] +id: UBERON:0011692 +name: enameloid +def: "Skeletal tissue that is hypermineralized and aprismatic and deposited by a combination of ameloblasts and odontoblasts that are excluded from the matrix. Enameloid develops from pre-enameloid tissue." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000113] +synonym: "bitypic enamel" EXACT [VSAO:curator] +synonym: "durodentine" EXACT [VSAO:curator] +synonym: "enameloid tissue" EXACT [VSAO:curator] +synonym: "vitrodentine" EXACT [VSAO:curator] +xref: VHOG:0001565 +xref: VSAO:0000113 +xref: XAO:0004199 +xref: ZFA:0005142 +is_a: UBERON:0010365 {source="VSAO"} ! odontoid tissue +is_a: UBERON:4000013 ! mineralized skeletal tissue +relationship: develops_from UBERON:0011688 {source="VSAO"} ! pre-enameloid +relationship: part_of UBERON:0001091 {source="ZFA"} ! calcareous tooth + +[Term] +id: UBERON:0011693 +name: extraembryonic portion of umbilical artery +synonym: "extraembryonic umbilical artery" EXACT [VHOG:0001157] +xref: VHOG:0001157 +is_a: UBERON:0000478 {source="EHDAA2-abduced"} ! extraembryonic structure +is_a: UBERON:0004573 ! systemic artery +relationship: branching_part_of UBERON:0001309 {source="FMA"} ! internal iliac artery +relationship: part_of UBERON:0001309 ! internal iliac artery +relationship: part_of UBERON:0001310 ! umbilical artery +relationship: part_of UBERON:0007807 {source="EHDAA2-abduced"} ! connecting stalk vasculature + +[Term] +id: UBERON:0011694 +name: embryo portion of umbilical artery +def: "Each of the two arteries arising from the hypogastric arteries of the fetus and passing throught the umbilical cord to the placenta." [VHOG:0000599] +synonym: "embryonic umbilical artery" EXACT [VHOG:0000599] +xref: VHOG:0000599 +is_a: UBERON:0001637 ! artery + +[Term] +id: UBERON:0011695 +name: embryonic cardiovascular system +def: "A cardiovascular system that is part of a conceptus." [OBOL:automatic] +synonym: "conceptus cardiovascular system" EXACT [] +synonym: "embryonic circulatory system" RELATED [] +synonym: "fetal circulatory system" RELATED [] +xref: EHDAA2:0000216 +xref: FMA:305965 +xref: NCIT:C34148 +is_a: UBERON:0004535 ! cardiovascular system +intersection_of: UBERON:0004535 ! cardiovascular system +intersection_of: part_of UBERON:0004716 ! conceptus +relationship: part_of UBERON:0004716 ! conceptus + +[Term] +id: UBERON:0011696 +name: left extraembryonic umbilical artery +synonym: "extraembryonic umbilical artery left" EXACT [EHDAA2:0000937] +xref: EHDAA2:0000937 +is_a: UBERON:0011693 ! extraembryonic portion of umbilical artery +relationship: connected_to UBERON:0011695 ! embryonic cardiovascular system + +[Term] +id: UBERON:0011697 +name: right extraembryonic umbilical artery +synonym: "extraembryonic umbilical artery right" EXACT [EHDAA2:0001721] +xref: EHDAA2:0001721 +is_a: UBERON:0011693 ! extraembryonic portion of umbilical artery + +[Term] +id: UBERON:0011698 +name: midgut loop +def: "Portion of midgut after it bends around the superior mesenteric artery" [http://en.wikipedia.org/wiki/Wikipedia] +xref: EMAPA:17036 +xref: http://en.wikipedia.org/wiki/Wikipedia +xref: http://linkedlifedata.com/resource/umls/id/C1513298 +xref: NCIT:C34211 +xref: UMLS:C1513298 {source="ncithesaurus:Midgut_Loop"} +xref: VHOG:0000673 +is_a: UBERON:0004921 ! subdivision of digestive tract +relationship: part_of UBERON:0001045 {source="VHOG"} ! midgut + +[Term] +id: UBERON:0011737 +name: caudate lobe hepatic sinusoid +def: "A hepatic sinusoid that is part of a caudate lobe of liver." [OBOL:automatic] +synonym: "liver right caudate lobe hepatic sinusoids" EXACT [EHDAA2:0001006] +xref: EHDAA2:0001006 +xref: EHDAA:6992 +xref: EMAPA:18314 +xref: VHOG:0000711 +is_a: UBERON:0009548 ! hepatic sinusoid of left of lobe of liver +is_a: UBERON:0009549 ! hepatic sinusoid of right of lobe of liver +intersection_of: UBERON:0001281 ! hepatic sinusoid +intersection_of: part_of UBERON:0001117 ! caudate lobe of liver +relationship: develops_in UBERON:0001117 {source="EHDAA2"} ! caudate lobe of liver +relationship: part_of UBERON:0001117 ! caudate lobe of liver + +[Term] +id: UBERON:0011738 +name: quadrate lobe hepatic sinusoid +def: "A hepatic sinusoid that is part of a quadrate lobe of liver." [OBOL:automatic] +synonym: "liver right quadrate lobe hepatic sinusoids" EXACT [EHDAA2:0001013] +xref: EHDAA2:0001013 +xref: EHDAA:8084 +xref: EMAPA:18319 +xref: VHOG:0000712 +is_a: UBERON:0009549 ! hepatic sinusoid of right of lobe of liver +intersection_of: UBERON:0001281 ! hepatic sinusoid +intersection_of: part_of UBERON:0001116 ! quadrate lobe of liver +relationship: develops_in UBERON:0001116 {source="EHDAA2"} ! quadrate lobe of liver +relationship: part_of UBERON:0001116 ! quadrate lobe of liver + +[Term] +id: UBERON:0011741 +name: cardiac valve leaflet +synonym: "valve leaflet" RELATED [MA:0003179] +xref: EMAPA:35903 +xref: MA:0003179 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0000946 ! cardial valve + +[Term] +id: UBERON:0011742 +name: aortic valve leaflet +def: "A cardiac valve leaflet that is part of a aortic valve." [OBOL:automatic] +subset: pheno_slim +synonym: "aortic valve leaflets" EXACT [VHOG:0000819] +xref: EMAPA:18627 +xref: VHOG:0000819 +is_a: UBERON:0011741 ! cardiac valve leaflet +intersection_of: UBERON:0011741 ! cardiac valve leaflet +intersection_of: part_of UBERON:0002137 ! aortic valve +relationship: part_of UBERON:0002137 ! aortic valve +relationship: part_of UBERON:0010172 {source="MP"} ! bulb of aorta + +[Term] +id: UBERON:0011745 +name: pulmonary valve leaflets +def: "A cardiac valve leaflet that is part of a pulmonary valve." [OBOL:automatic] +subset: pheno_slim +xref: EMAPA:18629 +xref: VHOG:0000820 +is_a: UBERON:0011741 ! cardiac valve leaflet +intersection_of: UBERON:0011741 ! cardiac valve leaflet +intersection_of: part_of UBERON:0002146 ! pulmonary valve +relationship: part_of UBERON:0002146 ! pulmonary valve + +[Term] +id: UBERON:0011754 +name: genital swelling +def: "Paired structures in the embryo that represent the final stage of development of the caudal end of the external genitals before sexual differentiation. In both males and females the two swellings merge: in the female, they become the posterior labial commissure; In the male, they become the scrotum" [http://en.wikipedia.org/wiki/Labioscrotal_swelling] +synonym: "labioscrotal swelling" EXACT [] +synonym: "tuberculum labioscrotale" RELATED LATIN [http://en.wikipedia.org/wiki/Labioscrotal_swelling] +xref: EMAPA:30074 +xref: EMAPA:35377 +xref: Labioscrotal:swelling +xref: VHOG:0000976 +is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0005876 ! undifferentiated genital tubercle + +[Term] +id: UBERON:0011755 +name: female labial swelling +def: "A genital swelling that is part of a female reproductive system." [OBOL:automatic] +synonym: "labial primordium" RELATED [] +synonym: "labial swelling" BROAD [EMAPA:18329] +synonym: "labioscrotal swelling of female" EXACT [EMAPA:30423] +xref: EHDAA2:0000501 +xref: EHDAA:9363 +xref: EMAPA:18329 +xref: EMAPA:30423 +is_a: UBERON:0011754 ! genital swelling +intersection_of: UBERON:0011754 ! genital swelling +intersection_of: part_of UBERON:0000474 ! female reproductive system +relationship: develops_from UBERON:0006233 ! female genital tubercle +relationship: part_of UBERON:0000474 ! female reproductive system + +[Term] +id: UBERON:0011756 +name: male genital swelling +def: "A genital swelling that is part of a male reproductive organ." [OBOL:automatic] +synonym: "labioscrotal swelling of male" EXACT [EMAPA:30509] +synonym: "scrotal bulge" EXACT [] +synonym: "scrotal primordium" EXACT [] +xref: EHDAA2:0001049 +xref: EMAPA:30509 +is_a: UBERON:0011754 ! genital swelling +intersection_of: UBERON:0011754 ! genital swelling +intersection_of: part_of UBERON:0003135 ! male reproductive organ +relationship: develops_from UBERON:0006261 ! male genital tubercle +relationship: part_of UBERON:0003135 ! male reproductive organ + +[Term] +id: UBERON:0011757 +name: differentiated genital tubercle +def: "." [http://en.wikipedia.org/wiki/Primordial_phallus] +synonym: "phallus" RELATED [http://en.wikipedia.org/wiki/Primordial_phallus] +synonym: "phallus primordialis" RELATED LATIN [http://en.wikipedia.org/wiki/Primordial_phallus] +synonym: "primordial phallus" RELATED [http://en.wikipedia.org/wiki/Primordial_phallus] +xref: http://linkedlifedata.com/resource/umls/id/C1514448 +xref: NCIT:C34274 +xref: Primordial:phallus +xref: UMLS:C1514448 {source="ncithesaurus:Primordial_Phallus"} +is_a: UBERON:0005423 ! developing anatomical structure +union_of: UBERON:0006233 ! female genital tubercle +union_of: UBERON:0006261 ! male genital tubercle +relationship: develops_from UBERON:0005876 ! undifferentiated genital tubercle +relationship: part_of UBERON:0004176 ! external genitalia + +[Term] +id: UBERON:0011765 +name: jugular lymph sac +def: "An embryonic lymph sac that forms at the junction of the future internal jugular/anterior cardinals and subclavian veins." [https://discovery.lifemapsc.com/library/review-of-medical-embryology/chapter-128-development-of-the-lymphatic-system, https://github.com/obophenotype/uberon/issues/1383, VHOG:0001000] +xref: EMAPA:18249 +xref: NCIT:C34196 +xref: VHOG:0001000 +is_a: UBERON:0034953 ! embryonic lymph sac + +[Term] +id: UBERON:0011766 +name: left recurrent laryngeal nerve +synonym: "left recurrent laryngeal branch" EXACT [EMAPA:25350] +synonym: "left recurrent laryngeal nerve" EXACT [FMA:14469] +synonym: "vagus X nerve left recurrent laryngeal branch" EXACT [MA:0001107] +xref: EMAPA:25350 +xref: FMA:14469 +xref: http://www.snomedbrowser.com/Codes/Details/280300006 +xref: MA:0001107 +is_a: UBERON:0003716 ! recurrent laryngeal nerve +intersection_of: UBERON:0003716 ! recurrent laryngeal nerve +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0011767 +name: right recurrent laryngeal nerve +synonym: "right recurrent laryngeal branch" EXACT [EMAPA:17275] +synonym: "right recurrent laryngeal nerve" EXACT [FMA:14468] +synonym: "vagus X nerve right recurrent laryngeal branch" EXACT [MA:0001108] +xref: EMAPA:17275 +xref: FMA:14468 +xref: http://www.snomedbrowser.com/Codes/Details/280299003 +xref: MA:0001108 +is_a: UBERON:0003716 ! recurrent laryngeal nerve +intersection_of: UBERON:0003716 ! recurrent laryngeal nerve +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: in_right_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0011768 +name: pineal gland stalk +synonym: "epiphyseal stalk" EXACT [ZFA:0001292] +synonym: "habenula" RELATED [] +synonym: "pineal stalk" EXACT [TAO:0001292] +xref: BAMS:PIS +xref: EMAPA:19036 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1966 +xref: MBA:730 +xref: TAO:0001292 +xref: VHOG:0001360 +xref: ZFA:0001292 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0001905 {source="EMAPA", source="VHOG"} ! pineal body + +[Term] +id: UBERON:0011769 +name: cartilaginous projection +def: "Anatomical projection that is composed of cartilage tissue." [VSAO:wd] +synonym: "cartilage process" EXACT [] +synonym: "cartilaginous process" EXACT [] +xref: FMA:284626 +is_a: UBERON:0004529 ! anatomical projection +intersection_of: UBERON:0004529 ! anatomical projection +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0011770 +name: mentomeckelian +def: "Paired, cylindrical, and small bones of endochondral origin that lie anteromedial to the anterior end of Meckel's cartilage. The precursors of the mentomeckelian bones are the larval infrarostral cartilages." [AAO:0000301] +synonym: "dentale" RELATED [AAO:0000301] +synonym: "pars mentalis" RELATED [AAO:0000301] +xref: AAO:0000301 +is_a: UBERON:0002513 {source="AAO"} ! endochondral bone +is_a: UBERON:0004768 ! bone of lower jaw +relationship: develops_from UBERON:3000237 ! infrarostral cartilage + +[Term] +id: UBERON:0011771 +name: obsolete larval structure +def: "Anatomical structure that is part of the larva." [AAO:0000265] +comment: Obsolete term in XAO - XAO:0003058 +is_obsolete: true +consider: AAO:0000265 + +[Term] +id: UBERON:0011772 +name: lower jaw opening +def: "An anatomical space that is part of a bone of lower jaw." [OBOL:automatic] +xref: AAO:0000273 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0004768 ! bone of lower jaw +relationship: luminal_space_of UBERON:0004768 ! bone of lower jaw +relationship: part_of UBERON:0004768 ! bone of lower jaw + +[Term] +id: UBERON:0011773 +name: upper jaw opening +def: "An anatomical space that is part of a bone of upper jaw." [OBOL:automatic] +xref: AAO:0000621 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0011597 ! bone of upper jaw +relationship: luminal_space_of UBERON:0011597 ! bone of upper jaw +relationship: part_of UBERON:0011597 ! bone of upper jaw + +[Term] +id: UBERON:0011774 +name: utriculosaccular duct +def: "A duct connecting the the utricle to the saccule in the membranous labyrinth of the ear." [http://www.merriam-webster.com/medical/utriculosaccular%20duct] +comment: Alternate: leads from the utricle of the internal ear to the endolymphatic duct. - http://medical-dictionary.thefreedictionary.com/utriculosaccular+duct. We assume a 3-way connection +synonym: "Böttcher's canal" EXACT [http://en.wikipedia.org] +synonym: "ductus utricosaccularis" EXACT [FMA:61243] +synonym: "utricosaccular duct" EXACT [] +synonym: "utricosaccular duct of membranous labyrinth" EXACT [FMA:61243] +synonym: "utriculo-saccular duct" EXACT [] +xref: EMAPA:37980 {source="MA:th"} +xref: FMA:61243 +xref: http://www.snomedbrowser.com/Codes/Details/279811007 +xref: NCIT:C33845 +is_a: UBERON:0000025 ! tube +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000025 ! tube +intersection_of: connects UBERON:0001853 ! utricle of membranous labyrinth +intersection_of: connects UBERON:0001854 ! saccule of membranous labyrinth +intersection_of: connects UBERON:0001860 ! endolymphatic duct +relationship: connects UBERON:0001853 ! utricle of membranous labyrinth +relationship: connects UBERON:0001854 ! saccule of membranous labyrinth +relationship: connects UBERON:0001860 ! endolymphatic duct +relationship: part_of UBERON:0001862 {source="MP"} ! vestibular labyrinth + +[Term] +id: UBERON:0011775 +name: vagus nerve nucleus +def: "A cranial nerve nucleus that is associated with a vagus nerve." [OBOL:automatic] +synonym: "nodosal nucleus" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "nucleus of vagal nerve" EXACT [] +synonym: "nucleus of vagal X nerve" EXACT [] +synonym: "nucleus of vagus nerve" EXACT [FMA:54573] +synonym: "nucleus of Xth nerve" EXACT [] +synonym: "tenth cranial nerve nucleus" EXACT [FMA:54573] +synonym: "vagal nucleus" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "vagal X nucleus" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "vagus nucleus" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: FMA:54573 +xref: http://www.snomedbrowser.com/Codes/Details/362467005 +is_a: UBERON:0000126 ! cranial nerve nucleus +is_a: UBERON:0009662 ! hindbrain nucleus +intersection_of: UBERON:0000126 ! cranial nerve nucleus +intersection_of: extends_fibers_into UBERON:0001759 ! vagus nerve +relationship: extends_fibers_into UBERON:0001759 ! vagus nerve + +[Term] +id: UBERON:0011776 +name: dorsal commissural nucleus of spinal cord +def: "A continuous column of gray matter along the midline in the dorsal gray commissure that sends fibers to the hypogastric nerve." [http://www.ncbi.nlm.nih.gov/pubmed/758335] +synonym: "spinal cord dorsal commissural nucleus" BROAD [MA:0001128] +xref: EMAPA:37748 {source="MA:th"} +xref: MA:0001128 +xref: NLX:144463 +is_a: UBERON:0011777 ! nucleus of spinal cord +intersection_of: UBERON:0000125 ! neural nucleus +intersection_of: part_of UBERON:0014631 ! dorsal gray commissure of spinal cord +relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord +relationship: part_of UBERON:0014631 ! dorsal gray commissure of spinal cord + +[Term] +id: UBERON:0011777 +name: nucleus of spinal cord +def: "A neural nucleus that is part of the spinal cord." [http://orcid.org/0000-0002-6601-2165] +subset: grouping_class +synonym: "spinal cord nucleus" EXACT [FMA:77011] +xref: FMA:77011 +is_a: UBERON:0000125 ! neural nucleus +intersection_of: UBERON:0000125 ! neural nucleus +intersection_of: part_of UBERON:0002240 ! spinal cord +relationship: part_of UBERON:0002240 ! spinal cord + +[Term] +id: UBERON:0011778 +name: motor nucleus of vagal nerve +synonym: "motor nucleus of X" EXACT [ZFA:0000387] +synonym: "motor nucleus X" EXACT [ZFA:0000387] +synonym: "nucleus motorius of nervi vagi" EXACT LATIN [ZFA:0000387] +synonym: "nX" BROAD [ZFA:0000387] +synonym: "vagal lobe" RELATED [ZFA:0000387] +xref: ZFA:0000387 +is_a: UBERON:0011775 ! vagus nerve nucleus + +[Term] +id: UBERON:0011779 +name: nerve of head region +def: "A nerve that is part of a head." [OBOL:automatic] +subset: grouping_class +synonym: "cephalic nerve" RELATED [] +synonym: "head nerve" RELATED [] +is_a: UBERON:0001021 ! nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0000033 ! head +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0011782 +name: feather follicle +def: "A small tubular invagination of the skin with a fleshy dermal papilla at the bottom from which the feather grows. The papilla is inserted in the opening at the end of the quill[TMD]. Forms by invagination of cylinder of epidermal tissue at base of feather bud." [http://medical-dictionary.thefreedictionary.com/feather+follicle, http://people.eku.edu/ritchisong/feather_evolution.htm] +synonym: "feather bud" RELATED [BTO:0003570] +xref: BTO:0003570 +xref: http://www.snomedbrowser.com/Codes/Details/68922000 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0036150 ! skin appendage follicle +relationship: develops_from UBERON:0011783 ! feather follicle placode + +[Term] +id: UBERON:0011783 +name: feather follicle placode +def: "An epidermal thickening above a condensation of dermal cells that will give rise to a feather follicle" [http://people.eku.edu/ritchisong/feather_evolution.htm] +synonym: "feather bud primordium" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/16172986] +synonym: "feather placode" EXACT [] +synonym: "feather primordium" EXACT [] +xref: http://people.eku.edu/ritchisong/554images/Feather_follicle_development)v3.jpg +is_a: UBERON:0011817 ! skin appendage placode +intersection_of: UBERON:0005085 ! ectodermal placode +intersection_of: has_potential_to_develop_into UBERON:0011782 ! feather follicle +relationship: has_potential_to_develop_into UBERON:0011782 ! feather follicle +relationship: part_of UBERON:0001003 ! skin epidermis + +[Term] +id: UBERON:0011784 +name: feather shaft +def: "The combination of the rachis and the calamus." [https://en.wikivet.net/Feather_-_Anatomy_%26_Physiology] +synonym: "feather shaft" EXACT [] +synonym: "shaft of feather" EXACT [] +synonym: "stem of feather" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/66810005 +is_a: UBERON:0000025 ! tube +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0000022 ! feather + +[Term] +id: UBERON:0011785 +name: ramus of feather barb +synonym: "barb ramus" RELATED [] +synonym: "main shaft of feather barb" EXACT [] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0013703 ! integumentary projection +relationship: part_of UBERON:0008294 ! feather barb + +[Term] +id: UBERON:0011786 +name: ramus of feather barbule +synonym: "barb ramus" RELATED [http://people.eku.edu/ritchisong/feather_evolution.htm] +synonym: "main shaft of feather barbule" EXACT [] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0013703 ! integumentary projection +relationship: part_of UBERON:0008295 ! feather barbule + +[Term] +id: UBERON:0011792 +name: feather muscle +def: "Similar to erector pili muscles of mammals; attached to the sides of the follicle; capable of elevating or lowering entire groups of feathers." [http://medical-dictionary.thefreedictionary.com/feather+follicle] +is_a: UBERON:0004253 ! skin muscle +intersection_of: UBERON:0004253 ! skin muscle +intersection_of: attaches_to UBERON:0011782 ! feather follicle +relationship: attaches_to UBERON:0011782 ! feather follicle + +[Term] +id: UBERON:0011793 +name: flight feather +def: "." [http://en.wikipedia.org/wiki/Flight_feather] +synonym: "contour feather" RELATED [http://people.eku.edu/ritchisong/feather_evolution.htm] +xref: Flight:feather +is_a: UBERON:0008297 ! pennaceous feather + +[Term] +id: UBERON:0011794 +name: rectrix feather +def: "A flight feather that lies along a single horizontal row on the rear margin of the anatomical tail. Only the central pair are attached (via ligaments) to the tail bones; the remaining rectrices are embedded into the rectricial bulbs, complex structures of fat and muscle that surround those bones. Rectrices are always paired, with a vast majority of species having six pairs. They are absent in grebes and some ratites, and greatly reduced in size in penguins" [http://en.wikipedia.org/wiki/Flight_feather#Rectrices] +synonym: "rectrices" EXACT PLURAL [] +synonym: "rectrix" EXACT [] +synonym: "retrices" EXACT PLURAL [] +synonym: "retrix" EXACT [] +synonym: "retrix feather" EXACT [] +xref: Rectrices +is_a: UBERON:0011793 ! flight feather +is_a: UBERON:0018537 ! tail feather +intersection_of: UBERON:0011793 ! flight feather +intersection_of: part_of UBERON:0002415 ! tail + +[Term] +id: UBERON:0011795 +name: remex feather +def: "A flight feather located on the posterior side of the wing" [http://en.wikipedia.org/wiki/Flight_feather#Remiges] +synonym: "remex" BROAD [] +synonym: "remiges" EXACT PLURAL [] +xref: Remiges +is_a: UBERON:0011793 ! flight feather +is_a: UBERON:0018536 ! wing feather +intersection_of: UBERON:0011793 ! flight feather +intersection_of: part_of UBERON:0000024 ! forelimb wing + +[Term] +id: UBERON:0011796 +name: primary remex feather +def: "A remex feather that is connected to the manus" [http://en.wikipedia.org/wiki/Flight_feather#Primaries] +synonym: "primary flight feather" EXACT [] +synonym: "primary remex" EXACT [] +synonym: "primary remiges" EXACT PLURAL [] +xref: Primaries +is_a: UBERON:0011795 ! remex feather +intersection_of: UBERON:0011795 ! remex feather +intersection_of: connected_to UBERON:0002398 ! manus +relationship: connected_to UBERON:0002398 ! manus + +[Term] +id: UBERON:0011797 +name: secondary remex feather +def: "A remex feather that is connected to the ulna." [http://en.wikipedia.org/wiki/Flight_feather#Secondaries] +synonym: "secondary flight feather" EXACT [] +synonym: "secondary remex" EXACT [] +synonym: "secondary remiges" EXACT PLURAL [] +xref: Secondaries +is_a: UBERON:0011795 ! remex feather +intersection_of: UBERON:0011795 ! remex feather +intersection_of: connected_to UBERON:0001424 ! ulna +relationship: connected_to UBERON:0001424 ! ulna + +[Term] +id: UBERON:0011798 +name: tertial remex feather +def: "A remex feather that is connected to the humerus." [http://en.wikipedia.org/wiki/Flight_feather#Tertials] +comment: tertials are connected to the humerus in some species. These elongated "true" tertials act as a protective cover for all or part of the folded primaries and secondaries, and do not qualify as flight feathers as such. However, many authorities use the term tertials to refer to the shorter, more symmetrical innermost secondaries of passerines (which perform the same function as true tertials) in an effort to distinguish them from the other secondaries. +synonym: "tertial flight feather" EXACT [] +synonym: "tertial remex" EXACT [] +synonym: "tertial remiges" EXACT PLURAL [] +synonym: "tertiary flight feather" EXACT [] +synonym: "tertiary remex" EXACT [] +synonym: "tertiary remiges" EXACT PLURAL [] +synonym: "true tertial" EXACT [] +xref: Tertials +is_a: UBERON:0011795 ! remex feather +intersection_of: UBERON:0011795 ! remex feather +intersection_of: connected_to UBERON:0000976 ! humerus +relationship: connected_to UBERON:0000976 ! humerus + +[Term] +id: UBERON:0011799 +name: cavity of feather shaft +def: "An anatomical cavity that is part of a feather shaft." [OBOL:automatic] +is_a: UBERON:0002553 ! anatomical cavity +intersection_of: UBERON:0002553 ! anatomical cavity +intersection_of: luminal_space_of UBERON:0011784 ! feather shaft +relationship: luminal_space_of UBERON:0011784 ! feather shaft +relationship: part_of UBERON:0011784 ! feather shaft + +[Term] +id: UBERON:0011800 +name: dermal pulp of feather shaft +def: "A tissue that is part of a cavity of feather shaft." [OBOL:automatic] +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000479 ! tissue +intersection_of: part_of UBERON:0011784 ! feather shaft +relationship: develops_from UBERON:0011803 ! feather bud, dermal component +relationship: located_in UBERON:0011799 ! cavity of feather shaft +relationship: part_of UBERON:0011784 ! feather shaft + +[Term] +id: UBERON:0011801 +name: dermal condensation of feather follicle +def: "A suprabasal cell population which together with the feather follicle placode develops into the feather follicle." [http://people.eku.edu/ritchisong/feather_evolution.htm] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0011585 ! cell condensation +intersection_of: UBERON:0011585 ! cell condensation +intersection_of: adjacent_to UBERON:0011783 ! feather follicle placode +intersection_of: part_of UBERON:0002067 ! dermis +relationship: adjacent_to UBERON:0011783 ! feather follicle placode +relationship: part_of UBERON:0002067 ! dermis + +[Term] +id: UBERON:0011802 +name: feather bud +def: "." [http://people.eku.edu/ritchisong/feather_evolution.htm] +synonym: "elongate feather bud" EXACT [http://people.eku.edu/ritchisong/feather_evolution.htm] +synonym: "feather papilla" EXACT [http://people.eku.edu/ritchisong/feather_evolution.htm] +is_a: UBERON:0005423 ! developing anatomical structure +relationship: has_part UBERON:0011803 ! feather bud, dermal component +relationship: has_part UBERON:0011804 ! feather bud, epidermal component + +[Term] +id: UBERON:0011803 +name: feather bud, dermal component +def: "The part of the feather bud formed by a proliferation of dermal cells" [http://people.eku.edu/ritchisong/feather_evolution.htm] +synonym: "dermal core of feather papilla" EXACT [] +synonym: "dermal papilla" BROAD [http://people.eku.edu/ritchisong/feather_evolution.htm] +synonym: "dermal papilla of feather bud" EXACT [] +synonym: "dermal papilla of feather papilla" EXACT [] +is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0011802 ! feather bud +relationship: develops_from UBERON:0011801 ! dermal condensation of feather follicle +relationship: part_of UBERON:0011802 ! feather bud + +[Term] +id: UBERON:0011804 +name: feather bud, epidermal component +def: "An epithelial bud that is part of a feather bud." [OBOL:automatic] +synonym: "feather bud epithelium" EXACT [] +synonym: "feather germ" RELATED [http://people.eku.edu/ritchisong/feather_evolution.htm] +is_a: UBERON:0005153 ! epithelial bud +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0005153 ! epithelial bud +intersection_of: part_of UBERON:0011802 ! feather bud +relationship: develops_from UBERON:0011783 ! feather follicle placode +relationship: part_of UBERON:0011802 ! feather bud + +[Term] +id: UBERON:0011805 +name: cavity of feather follicle +def: "." [http://people.eku.edu/ritchisong/feather_evolution.htm] +is_a: UBERON:0002553 ! anatomical cavity +intersection_of: UBERON:0002553 ! anatomical cavity +intersection_of: luminal_space_of UBERON:0011782 ! feather follicle +relationship: luminal_space_of UBERON:0011782 ! feather follicle +relationship: part_of UBERON:0011782 ! feather follicle + +[Term] +id: UBERON:0011806 +name: dermis of feather follicle +def: "A tissue that is part of a dermis and is part of a feather follicle." [OBOL:automatic] +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000479 ! tissue +intersection_of: part_of UBERON:0002067 ! dermis +intersection_of: part_of UBERON:0011782 ! feather follicle +relationship: develops_from UBERON:0011804 ! feather bud, epidermal component +relationship: part_of UBERON:0002067 ! dermis +relationship: part_of UBERON:0011782 ! feather follicle + +[Term] +id: UBERON:0011807 +name: epidermis of feather follicle +def: "A tissue that is part of a epidermis and is part of a feather follicle." [OBOL:automatic] +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000479 ! tissue +intersection_of: part_of UBERON:0001003 ! skin epidermis +intersection_of: part_of UBERON:0011782 ! feather follicle +relationship: develops_from UBERON:0011804 ! feather bud, epidermal component +relationship: part_of UBERON:0001003 ! skin epidermis +relationship: part_of UBERON:0011782 ! feather follicle + +[Term] +id: UBERON:0011808 +name: outer epidermal layer of feather follicle +is_a: UBERON:0011807 ! epidermis of feather follicle +intersection_of: UBERON:0011807 ! epidermis of feather follicle +intersection_of: bounding_layer_of UBERON:0011782 ! feather follicle +relationship: bounding_layer_of UBERON:0011782 ! feather follicle + +[Term] +id: UBERON:0011809 +name: inner epidermal layer of feather follicle +synonym: "epidermal collar" BROAD [http://people.eku.edu/ritchisong/feather_evolution.htm] +synonym: "epidermal collar of feather follicle" EXACT [http://people.eku.edu/ritchisong/feather_evolution.htm] +synonym: "follicle collar" BROAD [http://people.eku.edu/ritchisong/feather_evolution.htm] +synonym: "follicle collar of feather follicle" EXACT [http://people.eku.edu/ritchisong/feather_evolution.htm] +is_a: UBERON:0011807 ! epidermis of feather follicle +intersection_of: UBERON:0011807 ! epidermis of feather follicle +intersection_of: immediately_deep_to UBERON:0011808 ! outer epidermal layer of feather follicle +relationship: immediately_deep_to UBERON:0011808 ! outer epidermal layer of feather follicle + +[Term] +id: UBERON:0011810 +name: collection of feathers +def: "An anatomical cluster that consists of feathers." [OBOL:automatic] +synonym: "feather coat" EXACT [] +synonym: "plumage" EXACT [] +is_a: UBERON:0034925 ! anatomical collection +intersection_of: UBERON:0034925 ! anatomical collection +intersection_of: has_member UBERON:0000022 ! feather +relationship: has_member UBERON:0000022 ! feather + +[Term] +id: UBERON:0011814 +name: non-neurogenic ectodermal placode +def: "Ectodermal placode that does not develop into a component of the nervous system." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/11523831] +is_a: UBERON:0005085 {source="cjm"} ! ectodermal placode + +[Term] +id: UBERON:0011817 +name: skin appendage placode +def: "An ectodermal placode that gives rise to any of the cutaneous appendages that protrude from the skin epidermis (heair, feathers, epidermal scales)." [https://github.com/obophenotype/uberon/issues/1266] +synonym: "cutaneous appendage follicle placode" EXACT [] +synonym: "skin follicle placode" EXACT [] +is_a: UBERON:0006598 ! presumptive structure +is_a: UBERON:0011814 {source="NCBIBook:NBK53175"} ! non-neurogenic ectodermal placode +intersection_of: UBERON:0005085 ! ectodermal placode +intersection_of: has_potential_to_develop_into UBERON:0036150 ! skin appendage follicle +relationship: has_developmental_contribution_from UBERON:0001003 ! skin epidermis +relationship: has_developmental_contribution_from UBERON:0002067 ! dermis +relationship: has_potential_to_develop_into UBERON:0036150 ! skin appendage follicle + +[Term] +id: UBERON:0011818 +name: superficial fascia +def: "Superficial fascia is found in the subcutis in most regions of the body, blending with the reticular layer of the dermis. It is present on the face, over the upper portion of the sternocleidomastoid, at the nape of the neck, and overlying the sternum. It is comprised mainly of loose areolar connective tissue and adipose and is the layer that primarily determines the shape of a body. In addition to its subcutaneous presence, this type of fascia surrounds organs and glands, neurovascular bundles, and is found at many other locations where it fills otherwise unoccupied space. It serves as a storage medium of fat and water; as a passageway for lymph, nerve and blood vessels; and as a protective padding to cushion and insulate. Superficial fascia is present, but does not contain fat, in the eyelids, ear, scrotum, penis and clitoris." [http://en.wikipedia.org/wiki/Superficial_fascia] +subset: pheno_slim +synonym: "subcutaneous tissue" EXACT [FMA:9630] +synonym: "superficial fascial layer" EXACT [] +synonym: "tela subcutanea" EXACT LATIN [FMA:TA] +xref: BTO:0004525 +xref: FMA:9630 +xref: GAID:929 +xref: http://www.snomedbrowser.com/Codes/Details/361713003 +xref: MESH:D040521 +xref: NCIT:C33660 +xref: Superficial:fascia +is_a: UBERON:0000479 ! tissue +relationship: part_of UBERON:0002199 {source="FMA"} ! integument + +[Term] +id: UBERON:0011819 +name: lumen of atrioventricular canal +def: "A tube lumen that is part of a atrioventricular canal." [OBOL:automatic] +synonym: "AVC lumen" EXACT [] +synonym: "cavity of atrioventricular canal" EXACT [] +synonym: "lumen of AVC" EXACT [] +xref: EHDAA2:0000152 +is_a: UBERON:0005082 {source="EHDAA2"} ! tube lumen +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0002087 ! atrioventricular canal +relationship: luminal_space_of UBERON:0002087 ! atrioventricular canal +relationship: part_of UBERON:0002087 ! atrioventricular canal + +[Term] +id: UBERON:0011820 +name: atrioventricular region +def: "An anatomical junction that divides and overlaps with and atrium and a ventricle in the heart." [http://orcid.org/0000-0002-6601-2165] +synonym: "atrial ventricular junction" RELATED [GO:0003294] +synonym: "atrioventricular junction" RELATED [FMA:85125, GO:0003294] +synonym: "atrioventricular segment" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/21234997] +synonym: "AV region" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/21234997] +synonym: "AV segment" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/21234997] +xref: EHDAA2:0004149 +xref: FMA:85125 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0007651 ! anatomical junction +intersection_of: UBERON:0007651 ! anatomical junction +intersection_of: connects UBERON:0002081 ! cardiac atrium +intersection_of: connects UBERON:0002082 ! cardiac ventricle +intersection_of: part_of UBERON:0000948 ! heart +relationship: connects UBERON:0002081 ! cardiac atrium +relationship: connects UBERON:0002082 ! cardiac ventricle +relationship: part_of UBERON:0000948 ! heart + +[Term] +id: UBERON:0011821 +name: irregular connective tissue +def: "Connective tissue, which consists of a population of connective tissue cells, the intercellular matrix of which contains an irregular network of collagen and elastic fiber bundles. Examples: areolar tissue, mucoid tissue, connective tissue of peritoneum, connective tissue of fibrous pericardium." [FMA:20107] +xref: FMA:20107 +is_a: UBERON:0002384 {source="FMA"} ! connective tissue + +[Term] +id: UBERON:0011822 +name: dense irregular connective tissue +def: "Irregular connective tissue is an irregular connective tissue, the intercellular matrix of which contains a dense irregular network of collagen and elastic fiber bundles. Examples: connective tissue of peritoneum, connective tissue of fibrous pericardium." [FMA:20109, http://en.wikipedia.org/wiki/Dense_irregular_connective_tissue] +synonym: "irregular dense connective tissue" EXACT [] +synonym: "typus irregularis (textus connectivus collagenosus compactus)" EXACT [FMA:20109] +xref: FMA:20109 +xref: http://en.wikipedia.org/wiki/Dense_irregular_connective_tissue +xref: http://linkedlifedata.com/resource/umls/id/C0738366 +xref: NCIT:C32882 +xref: UMLS:C0738366 {source="ncithesaurus:Irregular_Dense_Connective_Tissue"} +is_a: UBERON:0011821 {source="FMA"} ! irregular connective tissue +is_a: UBERON:0011823 ! dense connective tissue + +[Term] +id: UBERON:0011823 +name: dense connective tissue +def: "Dense connective tissue is mainly composed of collagen type I. Crowded between the collagen fibers are rows of fibroblasts, fiber-forming cells, that manufacture the fibers. Dense connective tissue forms strong, rope-like structures such as tendons and ligaments. Tendons attach skeletal muscles to bones; ligaments connect bones to bones at joints. Ligaments are more stretchy and contain more elastic fibers than tendons. Dense connective tissue also make up the lower layers of the skin (dermis), where it is arranged in sheets" [http://en.wikipedia.org/wiki/Dense_connective_tissue] +xref: AAO:0000121 +xref: http://en.wikipedia.org/wiki/Dense_connective_tissue +xref: http://linkedlifedata.com/resource/umls/id/C1511770 +xref: NCIT:C32450 +xref: UMLS:C1511770 {source="ncithesaurus:Dense_Connective_Tissue"} +is_a: UBERON:0002384 ! connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: composed_primarily_of UBERON:0011860 ! collection of collagen fibrils +disjoint_from: UBERON:0011825 ! loose connective tissue +relationship: composed_primarily_of UBERON:0011860 ! collection of collagen fibrils + +[Term] +id: UBERON:0011824 +name: fibrous connective tissue +xref: FMA:75634 +xref: http://www.snomedbrowser.com/Codes/Details/363130003 +is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue + +[Term] +id: UBERON:0011825 +name: loose connective tissue +def: "Irregular connective tissue, the intercellular matrix of which contains a sparse irregular network of collagen and elastic fiber bundles. Examples: areolar tissue, neuroglial tissue, mucoid tissue." [FMA:19783] +synonym: "textus connectivus collagenosus laxus" EXACT LATIN [FMA:19783, FMA:TA] +synonym: "textus connectivus laxus" EXACT LATIN [FMA:19783, FMA:TA] +xref: FMA:19783 +xref: http://en.wikipedia.org/wiki/Loose_connective_tissue +xref: http://linkedlifedata.com/resource/umls/id/C1253917 +xref: NCIT:C33007 +xref: UMLS:C1253917 {source="ncithesaurus:Loose_Connective_Tissue"} +is_a: UBERON:0011821 {source="FMA"} ! irregular connective tissue + +[Term] +id: UBERON:0011826 +name: vestibular gland +def: "Lobular organ the parenchyma of which consists of glandular acini which communicate with the vestibule of vagina. Examples: right vestibular gland, lesser vestibular gland." [FMA:20020, http://en.wikipedia.org/wiki/Vestibular_glands] +subset: grouping_class +xref: FMA:20020 +xref: Vestibular:glands +is_a: UBERON:0005398 ! female reproductive gland +relationship: part_of UBERON:0000997 ! mammalian vulva + +[Term] +id: UBERON:0011827 +name: areolar gland +def: "A sebaceous glands in the areola surrounding the nipple." [http://en.wikipedia.org/wiki/Areolar_glands] +synonym: "accessory gland of breast" EXACT [FMA:58090] +synonym: "accessory gland of Montgomery" EXACT [FMA:58090] +synonym: "gland of Montgomery" EXACT [] +synonym: "mammary gland sebaceous gland" RELATED [MA:0000794] +synonym: "Montgomery's gland" EXACT [] +xref: Areolar:glands +xref: EMAPA:37668 {source="MA:th"} +xref: FMA:58090 +xref: http://linkedlifedata.com/resource/umls/id/C0929386 +xref: http://www.snomedbrowser.com/Codes/Details/279034002 +xref: MA:0000794 +xref: NCIT:C92833 +xref: UMLS:C0929386 {source="ncithesaurus:Montgomery_s_Tubercle"} +is_a: UBERON:0001821 ! sebaceous gland +intersection_of: UBERON:0001821 ! sebaceous gland +intersection_of: part_of UBERON:0002032 ! areola +relationship: part_of UBERON:0002032 ! areola + +[Term] +id: UBERON:0011828 +name: areolar tubercle +synonym: "Montgomery tubercle" EXACT [] +synonym: "Montgomery's tubercle" EXACT [] +synonym: "tubercle of Montgomery" EXACT [] +xref: FMA:58091 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005813 {source="FMA"} ! tubercle +relationship: part_of UBERON:0002030 ! nipple + +[Term] +id: UBERON:0011830 +name: duct of lesser vestibular gland +def: "A duct that is part of a minor vestibular gland." [OBOL:automatic] +synonym: "lesser vestibular gland duct" EXACT [FMA:20094] +xref: FMA:20094 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010146 ! paraurethral duct +is_a: UBERON:0011831 ! duct of vestibular gland +intersection_of: UBERON:0000058 ! duct +intersection_of: part_of UBERON:0000461 ! minor vestibular gland +relationship: part_of UBERON:0000461 ! minor vestibular gland + +[Term] +id: UBERON:0011831 +name: duct of vestibular gland +def: "A duct that is part of a vestibular gland." [OBOL:automatic] +synonym: "vestibular gland duct" EXACT [FMA:20097] +xref: FMA:20097 +is_a: UBERON:0000058 ! duct +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0000058 ! duct +intersection_of: part_of UBERON:0011826 ! vestibular gland +relationship: part_of UBERON:0011826 ! vestibular gland + +[Term] +id: UBERON:0011844 +name: duct of areolar gland +synonym: "areolar gland duct" EXACT [FMA:67744] +xref: FMA:67744 +is_a: UBERON:0001765 ! mammary duct +is_a: UBERON:0011845 ! duct of sebaceous gland +relationship: part_of UBERON:0011827 ! areolar gland + +[Term] +id: UBERON:0011845 +name: duct of sebaceous gland +def: "A duct that is part of a sebaceous gland." [OBOL:automatic] +synonym: "sebaceous gland duct" EXACT [FMA:70947] +xref: FMA:70947 +xref: NCIT:C33520 +is_a: UBERON:0000058 ! duct +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000058 ! duct +intersection_of: part_of UBERON:0001821 ! sebaceous gland +relationship: part_of UBERON:0001821 ! sebaceous gland + +[Term] +id: UBERON:0011846 +name: acinus of sebaceous gland +def: "An acinus that is part of a sebaceous gland." [OBOL:automatic] +synonym: "sebaceous gland acinus" EXACT [FMA:59657] +xref: FMA:59657 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0011858 ! acinus of exocrine gland +intersection_of: UBERON:0009842 ! glandular acinus +intersection_of: part_of UBERON:0001821 ! sebaceous gland +relationship: part_of UBERON:0001821 ! sebaceous gland + +[Term] +id: UBERON:0011847 +name: acinus of parotid gland +def: "An acinus that is part of a parotid gland." [OBOL:automatic] +subset: pheno_slim +synonym: "parotid gland acinus" EXACT [FMA:59863] +xref: EMAPA:37933 {source="MA:th"} +xref: FMA:59863 +xref: http://www.snomedbrowser.com/Codes/Details/46926004 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011850 ! acinus of salivary gland +is_a: UBERON:0013232 ! serous acinus +intersection_of: UBERON:0009842 ! glandular acinus +intersection_of: part_of UBERON:0001831 ! parotid gland +relationship: part_of UBERON:0001831 ! parotid gland + +[Term] +id: UBERON:0011850 +name: acinus of salivary gland +def: "An acinus that is part of a salivary gland." [OBOL:automatic] +synonym: "salivary gland acinus" EXACT [FMA:59870] +xref: FMA:59870 +is_a: UBERON:0011858 ! acinus of exocrine gland +intersection_of: UBERON:0009842 ! glandular acinus +intersection_of: part_of UBERON:0001044 ! saliva-secreting gland +relationship: part_of UBERON:0001044 ! saliva-secreting gland + +[Term] +id: UBERON:0011854 +name: acinus of areolar gland +def: "An acinus that is part of a areolar gland." [OBOL:automatic] +synonym: "areolar gland acinus" EXACT [FMA:62081] +xref: FMA:62081 +is_a: UBERON:0011846 ! acinus of sebaceous gland +is_a: UBERON:0011856 ! acinus of lactiferous gland +intersection_of: UBERON:0009842 ! glandular acinus +intersection_of: part_of UBERON:0011827 ! areolar gland +relationship: part_of UBERON:0011827 ! areolar gland + +[Term] +id: UBERON:0011856 +name: acinus of lactiferous gland +def: "An acinus that is part of a mammary gland." [OBOL:automatic] +synonym: "lactiferous gland acinus" EXACT [FMA:74438] +xref: FMA:74438 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0011858 ! acinus of exocrine gland +intersection_of: UBERON:0009842 ! glandular acinus +intersection_of: part_of UBERON:0001911 ! mammary gland +relationship: part_of UBERON:0001912 ! lobule of mammary gland + +[Term] +id: UBERON:0011857 +name: acinus of lacrimal gland +def: "An acinus that is part of a lacrimal gland." [OBOL:automatic] +synonym: "lacrimal gland acinus" EXACT [FMA:85250] +xref: FMA:85250 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011858 ! acinus of exocrine gland +intersection_of: UBERON:0009842 ! glandular acinus +intersection_of: part_of UBERON:0001817 ! lacrimal gland +relationship: part_of UBERON:0001817 ! lacrimal gland + +[Term] +id: UBERON:0011858 +name: acinus of exocrine gland +def: "An acinus that is part of a exocrine gland." [OBOL:automatic] +synonym: "exocrine gland acinus" EXACT [] +is_a: UBERON:0009842 ! glandular acinus +intersection_of: UBERON:0009842 ! glandular acinus +intersection_of: part_of UBERON:0002365 ! exocrine gland +relationship: part_of UBERON:0002365 ! exocrine gland + +[Term] +id: UBERON:0011859 +name: internal acoustic meatus +def: "The internal auditory meatus (also internal acoustic meatus, internal auditory canal, and internal acoustic canal) is a canal in the petrous bone of the temporal bone of the skull that carries nerves from inside the cranium towards the middle and inner ear compartments namely cranial nerve VII and cranial nerve VIII." [http://en.wikipedia.org/wiki/Internal_auditory_meatus] +comment: Alternate def: The internal acoustic meatus (or internal auditory meatus ) is an opening on the medial surface of the petrous temporal bone. It is through this passageway that the facial nerve (cranial nerve VII) and vestibulocochlear nerve (cranial nerve VIII) pass to reach their sites of innervation. The vestibulocochlear nerve divides at the internal acoustic meatus to continue as separate vestibular and cochlear components. [MURDOCH:908] +subset: pheno_slim +synonym: "internal acoustic canal" RELATED [http://en.wikipedia.org/wiki/Internal_auditory_meatus] +synonym: "internal acoustic meatus" RELATED [http://en.wikipedia.org/wiki/Internal_auditory_meatus] +synonym: "internal auditory canal" RELATED [http://en.wikipedia.org/wiki/Internal_auditory_meatus] +synonym: "internal auditory meatus" RELATED [http://en.wikipedia.org/wiki/Internal_auditory_meatus] +synonym: "porus acusticus internus" RELATED [http://en.wikipedia.org/wiki/Internal_auditory_meatus] +xref: FMA:53163 +xref: http://en.wikipedia.org/wiki/Internal_auditory_meatus +xref: http://linkedlifedata.com/resource/umls/id/C0149591 +xref: http://www.snomedbrowser.com/Codes/Details/264484004 +xref: NCIT:C95443 +xref: UMLS:C0149591 {source="ncithesaurus:Internal_Auditory_Canal_of_Ear"} +is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: conduit_for UBERON:0001647 ! facial nerve +relationship: conduit_for UBERON:0001648 ! vestibulocochlear nerve +relationship: contributes_to_morphology_of UBERON:0001846 ! internal ear +relationship: part_of UBERON:0001846 {source="MP"} ! internal ear + +[Term] +id: UBERON:0011860 +name: collection of collagen fibrils +xref: FMA:63212 +xref: MESH:D024022 +xref: NCIT:C32339 +xref: NIF_Subcellular:sao7547390221 +is_a: UBERON:0000476 {source="ZFA"} ! acellular anatomical structure +relationship: seeAlso UBERON:0007377 ! stratum compactum of dermis + +[Term] +id: UBERON:0011861 +name: aorta collagen fibril +def: "The connective tissue bundles in the extracellular matrix of aorta tissue that are composed of collagen, and play a role in tissue strength and elasticity" [MP:0011640] +subset: pheno_slim +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0011860 ! collection of collagen fibrils +intersection_of: UBERON:0011860 ! collection of collagen fibrils +intersection_of: part_of UBERON:0004664 ! aorta tunica adventitia +relationship: contributes_to_morphology_of UBERON:0004664 ! aorta tunica adventitia +relationship: part_of UBERON:0004664 ! aorta tunica adventitia + +[Term] +id: UBERON:0011862 +name: pulmonary collagen fibril +def: "The connective tissue bundles in the extracellular matrix of pulmonary tissue that are composed of collagen, and play a role in tissue strength and elasticity" [MP:0011641] +subset: pheno_slim +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0011860 ! collection of collagen fibrils +intersection_of: UBERON:0011860 ! collection of collagen fibrils +intersection_of: part_of UBERON:0002048 ! lung +relationship: contributes_to_morphology_of UBERON:0002048 ! lung +relationship: part_of UBERON:0002048 ! lung + +[Term] +id: UBERON:0011863 +name: bone collagen fibril +def: "The connective tissue bundles in the extracellular matrix of bone tissue that are composed of collagen, and play a role in tissue strength and elasticity" [MP:0011642] +subset: pheno_slim +is_a: UBERON:0011860 ! collection of collagen fibrils +intersection_of: UBERON:0011860 ! collection of collagen fibrils +intersection_of: part_of UBERON:0001474 ! bone element +relationship: part_of UBERON:0001474 ! bone element + +[Term] +id: UBERON:0011864 +name: tendon collagen fibril +def: "The connective tissue bundles in the extracellular matrix of tendon tissue that are composed of collagen, and play a role in tissue strength and elasticity" [MP:0011643] +subset: pheno_slim +is_a: UBERON:0011860 ! collection of collagen fibrils +intersection_of: UBERON:0011860 ! collection of collagen fibrils +intersection_of: part_of UBERON:0000043 ! tendon +relationship: contributes_to_morphology_of UBERON:0000043 ! tendon +relationship: part_of UBERON:0000043 ! tendon + +[Term] +id: UBERON:0011865 +name: corneal stroma collagen fibril +def: "The connective tissue bundles in the extracellular matrix of corneal stroma that are composed of collagen, and play a role in tissue strength and elasticity" [MP:0011650] +subset: pheno_slim +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0011860 ! collection of collagen fibrils +intersection_of: UBERON:0011860 ! collection of collagen fibrils +intersection_of: part_of UBERON:0001777 ! substantia propria of cornea +relationship: contributes_to_morphology_of UBERON:0001777 ! substantia propria of cornea +relationship: part_of UBERON:0001777 ! substantia propria of cornea + +[Term] +id: UBERON:0011866 +name: condylar joint +def: "In a condyloid joint (condyloid articulation, ellipsoidal joint) an ovoid articular surface, or condyle, is received into an elliptical cavity. This permits movement in two planes, allowing flexion, extension, adduction, abduction, and circumduction." [http://en.wikipedia.org/wiki/Condyloid_joint] +synonym: "articulatio ellipsoidea" RELATED LATIN [http://en.wikipedia.org/wiki/Condyloid_joint] +synonym: "condylar joint" RELATED [http://en.wikipedia.org/wiki/Condyloid_joint] +synonym: "condyloid" RELATED [http://en.wikipedia.org/wiki/Condyloid_joint] +synonym: "condyloid articulation" RELATED [http://en.wikipedia.org/wiki/Condyloid_joint] +synonym: "condyloid joints" RELATED [http://en.wikipedia.org/wiki/Condyloid_joint] +synonym: "ellipsoidal joint" RELATED [http://en.wikipedia.org/wiki/Condyloid_joint] +xref: Condyloid:joint +xref: FMA:75300 +xref: http://www.snomedbrowser.com/Codes/Details/335493003 +is_a: UBERON:0002217 ! synovial joint + +[Term] +id: UBERON:0011867 +name: extensor carpi radialis muscle +synonym: "extensor carpi radialis" EXACT [] +xref: EMAPA:36187 +xref: http://www.snomedbrowser.com/Codes/Details/276166006 +is_a: UBERON:0001482 ! muscle of shoulder +is_a: UBERON:0011024 ! extrinsic extensor muscle of manus +relationship: has_muscle_insertion UBERON:0002374 ! metacarpal bone +relationship: has_muscle_origin UBERON:0000976 ! humerus +relationship: innervated_by UBERON:0001492 ! radial nerve + +[Term] +id: UBERON:0011868 +name: midcarpal joint +def: "An intercarpal that connects a proximal and distal carpal bone" [http://en.wikipedia.org/wiki/Midcarpal_joint, http://orcid.org/0000-0002-6601-2165] +synonym: "articulatio mediocarpalis" EXACT LATIN [http://en.wikipedia.org/wiki/Midcarpal_joint] +synonym: "transverse carpal joint" EXACT [FMA:35293] +xref: FMA:35293 +xref: http://www.snomedbrowser.com/Codes/Details/361841009 +xref: Midcarpal:joint +is_a: UBERON:0011132 ! intercarpal joint +relationship: connects UBERON:0001480 ! proximal carpal bone +relationship: connects UBERON:0001481 ! distal carpal bone + +[Term] +id: UBERON:0011869 +name: pisiform joint +def: "." [http://en.wikipedia.org/wiki/Pisiform_joint] +comment: Wikipedia says pisiform and triquetral- todo check pisotriquetral +synonym: "articulatio ossis pisiformis" EXACT LATIN [http://en.wikipedia.org/wiki/Pisiform_joint] +xref: FMA:73126 +xref: Pisiform:joint +is_a: UBERON:0011132 ! intercarpal joint +intersection_of: UBERON:0011132 ! intercarpal joint +intersection_of: connects UBERON:0001429 ! pisiform +intersection_of: connects UBERON:0002445 ! ulnare +relationship: connects UBERON:0001429 ! pisiform +relationship: connects UBERON:0002445 ! ulnare + +[Term] +id: UBERON:0011870 +name: pisotriquetral joint +comment: See notes for pisiform +xref: FMA:42318 +is_a: UBERON:0011132 {source="FMA"} ! intercarpal joint + +[Term] +id: UBERON:0011871 +name: nasomaxillary suture +def: "A cranial suture that connects a nasal bone and connects a maxilla." [OBOL:automatic] +synonym: "articulation of the nasal bone with maxilla" RELATED [] +synonym: "nasomaxillary suture of skull" EXACT [FMA:52960] +xref: FMA:52960 +is_a: UBERON:0003685 ! cranial suture +intersection_of: UBERON:0003685 ! cranial suture +intersection_of: connects UBERON:0001681 ! nasal bone +intersection_of: connects UBERON:0002397 ! maxilla +relationship: connects UBERON:0001681 ! nasal bone +relationship: connects UBERON:0002397 ! maxilla + +[Term] +id: UBERON:0011873 +name: synarthrosis +def: "A synarthrosis is a type of joint which permits very little or no movement under normal conditions. Most synarthrosis joints are fibrous. Suture joints and synchondroses are synarthroses." [http://en.wikipedia.org/wiki/Synarthrosis] +synonym: "synarthrodial" RELATED [http://en.wikipedia.org/wiki/Synarthrosis] +synonym: "synarthrodial joint" RELATED [http://en.wikipedia.org/wiki/Synarthrosis] +synonym: "synarthroses" RELATED [http://en.wikipedia.org/wiki/Synarthrosis] +xref: http://en.wikipedia.org/wiki/Synarthrosis +xref: http://linkedlifedata.com/resource/umls/id/C0699803 +xref: NCIT:C33716 +xref: UMLS:C0699803 {source="ncithesaurus:Synarthrosis"} +is_a: UBERON:0000982 ! skeletal joint + +[Term] +id: UBERON:0011874 +name: amphiarthrosis +def: "Amphiarthrosis is a type of continuous, slightly movable joint." [http://en.wikipedia.org/wiki/Amphiarthrosis] +synonym: "amphiarthrodial" RELATED [http://en.wikipedia.org/wiki/Amphiarthrosis] +synonym: "amphiarthroses" RELATED [http://en.wikipedia.org/wiki/Amphiarthrosis] +xref: FMA:76693 +xref: http://en.wikipedia.org/wiki/Amphiarthrosis +xref: http://linkedlifedata.com/resource/umls/id/C0224520 +xref: NCIT:C32061 +xref: UMLS:C0224520 {source="ncithesaurus:Amphiarthrosis"} +is_a: UBERON:0000982 ! skeletal joint + +[Term] +id: UBERON:0011875 +name: ligament of sternoclavicular joint +def: "A skeletal ligament that is part of a sternoclavicular joint." [OBOL:automatic] +synonym: "ligamentum sternoclavicularis" EXACT LATIN [] +synonym: "sternoclavicular joint ligament" EXACT [FMA:63980] +xref: FMA:63980 +xref: http://www.snomedbrowser.com/Codes/Details/182386007 +is_a: UBERON:0008846 ! skeletal ligament +intersection_of: UBERON:0008846 ! skeletal ligament +intersection_of: part_of UBERON:0001469 ! sternoclavicular joint +relationship: part_of UBERON:0001469 ! sternoclavicular joint + +[Term] +id: UBERON:0011876 +name: body of tongue +def: "The oral part of the tongue anterior to the terminal sulcus." [http://www.drugs.com/dict/body-of-tongue.html] +synonym: "corpus linguae" EXACT LATIN [http://www.drugs.com/dict/body-of-tongue.html] +synonym: "tongue body" EXACT [FMA:54641] +xref: FMA:54641 +xref: http://www.snomedbrowser.com/Codes/Details/362090005 +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0001723 {source="FMA"} ! tongue + +[Term] +id: UBERON:0011877 +name: margin of tongue +def: "The lateral border that separates the dorsum from the inferior surface of the tongue on each side, the two borders meeting anteriorly at the apex.." [http://www.drugs.com/dict/margin-of-tongue.html] +synonym: "margo linguae" EXACT LATIN [http://www.drugs.com/dict/margin-of-tongue.html] +synonym: "tongue margin" EXACT [FMA:54650] +xref: FMA:54650 +xref: http://www.snomedbrowser.com/Codes/Details/368572007 +xref: http://www.snomedbrowser.com/Codes/Details/368594004 +is_a: UBERON:0006800 ! anatomical line +intersection_of: UBERON:0006800 ! anatomical line +intersection_of: connects UBERON:0007371 ! superior surface of tongue +intersection_of: connects UBERON:0007373 ! inferior surface of tongue +relationship: connects UBERON:0007371 ! superior surface of tongue +relationship: connects UBERON:0007373 ! inferior surface of tongue +relationship: part_of UBERON:0001723 ! tongue + +[Term] +id: UBERON:0011878 +name: muscle layer of esophagus +def: "A muscle layer that is part of a wall of esophagus." [OBOL:automatic] +synonym: "muscle coat of esophagus" EXACT [FMA:62998] +synonym: "muscular coat of oesophagus" EXACT [FMA:62998] +synonym: "muscular layer of oesophagus" EXACT [FMA:62998] +synonym: "tela muscularis (oesophagus)" EXACT LATIN [FMA:62998, FMA:TA] +synonym: "tunica muscularis esophagi" EXACT LATIN [] +synonym: "tunica muscularis oesophageae" EXACT LATIN [FMA:TA] +xref: FMA:62998 +is_a: UBERON:0018261 ! muscular coat of digestive tract +intersection_of: UBERON:0006660 ! muscular coat +intersection_of: part_of UBERON:0001043 ! esophagus +relationship: has_part UBERON:0001134 {notes="upper part", source="Muscular:layer"} ! skeletal muscle tissue +relationship: part_of UBERON:0001096 ! wall of esophagus + +[Term] +id: UBERON:0011879 +name: mesorchium +def: "The testes, at an early period of fetal life, are placed at the back part of the abdominal cavity, behind the peritoneum, and each is attached by a peritoneal fold, the mesorchium, to the mesonephros." [http://en.wikipedia.org/wiki/Mesorchium] +synonym: "testis mesentery" RELATED [EMAPA:17971] +xref: AAO:0010530 +xref: EMAPA:17971 +xref: http://en.wikipedia.org/wiki/Mesorchium +xref: MA:0003238 +is_a: UBERON:0000481 {source="AAO"} ! multi-tissue structure +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0003135 {source="EMAPA"} ! male reproductive organ + +[Term] +id: UBERON:0011892 +name: anterior uvea +def: "Front (ventral) portion of the vascular, pigmentary, or middle coat of the eye, including the ciliary body and the iris." [MP:0005194] +subset: pheno_slim +synonym: "anterior part of uveal tract" EXACT [] +synonym: "anterior uveal tract" EXACT [] +synonym: "anterior vascular layer of the eyeball" EXACT [] +synonym: "anterior vascular tunic of the eye" EXACT [] +synonym: "ciliary body and iris" RELATED [] +synonym: "Haller tunica vascula" EXACT [MP:0005194] +synonym: "tunica vasculosa bulbosa" EXACT [MP:0005194] +synonym: "vasculosa oculi" RELATED [MP:0005194] +synonym: "ventral uveal tract" EXACT [] +xref: EMAPA:37417 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/280656002 +is_a: UBERON:0000481 {source="ZFA"} ! multi-tissue structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: contributes_to_morphology_of UBERON:0001768 ! uvea +relationship: contributes_to_morphology_of UBERON:0001801 ! anterior segment of eyeball +relationship: has_part UBERON:0001769 ! iris +relationship: has_part UBERON:0001775 ! ciliary body +relationship: part_of UBERON:0001768 {source="MP"} ! uvea + +[Term] +id: UBERON:0011893 +name: endoneurial fluid +def: "Fluid of the ganglia and peripheral nerves that lie outside the brain and spinal cord" [MGI:llw2, MP:0003633] +subset: pheno_slim +xref: EMAPA:37850 {source="MA:th"} +is_a: UBERON:0007794 {source="FMA"} ! secretion of serous gland +intersection_of: UBERON:0000463 ! organism substance +intersection_of: located_in UBERON:0000123 ! endoneurium +relationship: located_in UBERON:0000123 ! endoneurium +relationship: part_of UBERON:0000123 ! endoneurium + +[Term] +id: UBERON:0011894 +name: lumen of vagina +def: "A organ cavity that is part of a vagina." [OBOL:automatic] +synonym: "vaginal lumen" EXACT [FMA:19982] +xref: FMA:19982 +is_a: UBERON:0002558 ! organ cavity +intersection_of: UBERON:0002558 ! organ cavity +intersection_of: part_of UBERON:0000996 ! vagina +relationship: part_of UBERON:0000996 ! vagina + +[Term] +id: UBERON:0011895 +name: endomysium +def: "A layer of connective tissue that ensheaths a muscle fiber and is composed mostly from reticular fibers. It also contains capillaries, nerves and lymphatics. The term cardiac skeleton is sometimes considered synonymous with endomysium, but sometimes it refers to the combination of the endomysium and perimysium." [http://en.wikipedia.org/wiki/Endomysium] +synonym: "fascia of muscle fiber" EXACT [FMA:9729] +xref: FMA:9729 +xref: http://en.wikipedia.org/wiki/Endomysium +xref: http://linkedlifedata.com/resource/umls/id/C0504097 +xref: http://www.snomedbrowser.com/Codes/Details/91739007 +xref: NCIT:C32517 +xref: UMLS:C0504097 {source="ncithesaurus:Endomysium"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0006804 ! reticular tissue +relationship: part_of UBERON:0002385 ! muscle tissue + +[Term] +id: UBERON:0011896 +name: smooth muscle endomysium +def: "Reticular tissue which surrounds a smooth muscle cell." [https://orcid.org/0000-0002-6601-2165] +xref: FMA:260651 +is_a: UBERON:0011895 ! endomysium +intersection_of: UBERON:0011895 ! endomysium +intersection_of: part_of UBERON:0001135 ! smooth muscle tissue +relationship: part_of UBERON:0001135 ! smooth muscle tissue + +[Term] +id: UBERON:0011897 +name: cardiac endomysium +def: "Reticular tissue which surrounds a cardiac myocyte." [FMA:83112] +synonym: "endomysium of cardiac muscle cell" EXACT [FMA:83112] +synonym: "fibrocollagenous sheath of cardiac muscle cell" EXACT [FMA:83112] +xref: FMA:83112 +is_a: UBERON:0003837 ! thoracic segment connective tissue +is_a: UBERON:0011895 ! endomysium +intersection_of: UBERON:0011895 ! endomysium +intersection_of: part_of UBERON:0001133 ! cardiac muscle tissue +relationship: part_of UBERON:0001133 ! cardiac muscle tissue + +[Term] +id: UBERON:0011898 +name: skeletal muscle endomysium +def: "Reticular tissue which surrounds a skeletal muscle cell." [FMA:86022] +xref: FMA:86022 +is_a: UBERON:0011895 ! endomysium +intersection_of: UBERON:0011895 ! endomysium +intersection_of: part_of UBERON:0001134 ! skeletal muscle tissue +relationship: part_of UBERON:0001134 ! skeletal muscle tissue + +[Term] +id: UBERON:0011899 +name: epimysium +def: "Epimysium is a layer of connective tissue which ensheaths the entire muscle. It is composed of dense irregular connective tissue. It is continuous with fascia and other connective tissue wrappings of muscle including the endomysium, and perimysium. It is also continuous with tendons where it becomes thicker and collagenous." [http://en.wikipedia.org/wiki/Epimysium] +synonym: "epimysia" RELATED PLURAL [http://en.wikipedia.org/wiki/Epimysium] +synonym: "fascia of muscle organ" EXACT [FMA:9726] +xref: FMA:9726 +xref: http://en.wikipedia.org/wiki/Epimysium +xref: http://linkedlifedata.com/resource/umls/id/C0504096 +xref: NCIT:C32527 +xref: UMLS:C0504096 {source="ncithesaurus:Epimysium"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue +relationship: bounding_layer_of UBERON:0014892 ! skeletal muscle organ +relationship: continuous_with UBERON:0000043 ! tendon +relationship: part_of UBERON:0001134 {source="FMA"} ! skeletal muscle tissue + +[Term] +id: UBERON:0011900 +name: perimysium +def: "The fibrous sheath enveloping each of the primary bundles of skeletal muscle fibers." [http://en.wikipedia.org/wiki/Perimysium, http://medical-dictionary.thefreedictionary.com/perimysium] +synonym: "fascia of muscle fasciculus" EXACT [FMA:9728] +xref: FMA:9728 +xref: http://en.wikipedia.org/wiki/Perimysium +xref: http://linkedlifedata.com/resource/umls/id/C0224087 +xref: http://www.snomedbrowser.com/Codes/Details/63406008 +xref: NCIT:C33299 +xref: UMLS:C0224087 {source="ncithesaurus:Perimysium"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue +relationship: part_of UBERON:0001134 {source="FMA"} ! skeletal muscle tissue + +[Term] +id: UBERON:0011901 +name: hair matrix +comment: The hair matrix surrounds the top and sides of the dermal papilla. The hair matrix cells give rise to 6 different types of cells that make up the different layers of the hair shaft and the inner root sheath. +xref: FMA:70945 +is_a: UBERON:0000021 ! cutaneous appendage +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001037 {source="FMA"} ! strand of hair + +[Term] +id: UBERON:0011903 +name: gizzard smooth muscle +def: "A smooth muscle tissue that is part of a gizzard." [OBOL:automatic] +xref: BTO:0000521 +is_a: UBERON:0004222 ! stomach smooth muscle +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0005052 ! gizzard +relationship: part_of UBERON:0005052 ! gizzard + +[Term] +id: UBERON:0011904 +name: gastrolith +def: "A rock held inside a gastrointestinal tract." [http://en.wikipedia.org/wiki/Gastrolith] +synonym: "gizzard stone" RELATED [http://en.wikipedia.org/wiki/Gastrolith] +synonym: "stomach stone" RELATED [http://en.wikipedia.org/wiki/Gastrolith] +xref: http://en.wikipedia.org/wiki/Gastrolith +is_a: UBERON:0000476 ! acellular anatomical structure +relationship: part_of UBERON:0001555 ! digestive tract + +[Term] +id: UBERON:0011905 +name: plantaris +def: "Plantaris is a vestigial structure and one of the superficial muscles of the posterior crural compartment of the leg. It is innervated by the tibial nerve (S1, S2) . It is composed of a thin muscle belly and a long thin tendon. It is approximately 2-4 inches long, and is absent in 7 - 10% of the human population. It is one of the plantar flexors in the superior compartment of the leg along with the gastrocnemius, and soleus. The plantaris is considered an unimportant muscle, it mainly acts with gastrocnemius[WP]." [http://en.wikipedia.org/wiki/Plantaris_muscle] +subset: efo_slim +synonym: "musculus plantaris" EXACT LATIN [] +synonym: "plantaris" EXACT [FMA:22543] +xref: EFO:0001979 +xref: EMAPA:36254 +xref: FMA:22543 +xref: Plantaris:muscle +is_a: UBERON:0004256 ! hindlimb zeugopod muscle +relationship: has_muscle_antagonist UBERON:0001385 ! tibialis anterior +relationship: has_muscle_insertion UBERON:0003701 ! calcaneal tendon +relationship: has_muscle_origin UBERON:0000981 {notes="Lateral supracondylar ridge of femur above lateral head of gastrocnemius"} ! femur +relationship: innervated_by UBERON:0001323 ! tibial nerve + +[Term] +id: UBERON:0011906 +name: muscle head +subset: upper_level +synonym: "caput (musculus)" EXACT [FMA:85453] +synonym: "caput musculi" EXACT [FMA:85453] +synonym: "head of muscle organ" EXACT [FMA:85453] +synonym: "muscular organ head" EXACT [FMA:85453] +synonym: "proximal myotendinous region of muscle organ" RELATED [FMA:85453] +xref: FMA:85453 +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0001630 ! muscle organ + +[Term] +id: UBERON:0011907 +name: gastrocnemius medialis +def: "." [ISBN:0073040584] +comment: Mammalian gastrocnemius medialis and flexor hallucis longus arise from reptilian gastrocnemius internus[Kardong] +synonym: "caput mediale (musculus gastrocnemius)" EXACT [FMA:45956] +synonym: "caput mediale musculus gastrocnemii" EXACT LATIN [FMA:45956, FMA:TA] +synonym: "medial head of gastrocnemius" EXACT [FMA:45956] +synonym: "medial head of gastrocnemius muscle" EXACT [] +xref: EMAPA:36250 +xref: FMA:45956 +xref: http://www.snomedbrowser.com/Codes/Details/213689008 +is_a: UBERON:0011906 ! muscle head +disjoint_from: UBERON:0011908 {source="lexical"} ! gastrocnemius lateralis +relationship: part_of UBERON:0001388 {source="FMA"} ! gastrocnemius + +[Term] +id: UBERON:0011908 +name: gastrocnemius lateralis +def: "." [ISBN:0073040584] +comment: Mammalian gastrocnemius lateralis, soleus and plantaris arise from reptilian gastrocnemius externus[Kardong] +synonym: "caput laterale (musculus gastrocnemius)" EXACT [FMA:45959] +synonym: "caput laterale musculus gastrocnemii" EXACT LATIN [FMA:45959, FMA:TA] +synonym: "lateral head of gastrocnemius" EXACT [FMA:45959] +synonym: "lateral head of gastrocnemius muscle" EXACT [] +xref: EMAPA:36249 +xref: FMA:45959 +xref: http://www.snomedbrowser.com/Codes/Details/213588009 +is_a: UBERON:0011906 ! muscle head +relationship: part_of UBERON:0001388 {source="FMA"} ! gastrocnemius + +[Term] +id: UBERON:0011909 +name: gastrocnemius internus +def: "." [ISBN:0073040584] +synonym: "M. gastrocnemius internus" EXACT [] +synonym: "musculus gastrocnemius internus" EXACT [] +is_a: UBERON:0004256 ! hindlimb zeugopod muscle + +[Term] +id: UBERON:0011910 +name: gastrocnemius externus +def: "." [ISBN:0073040584] +synonym: "M. gastrocnemius externus" EXACT [] +synonym: "musculus gastrocnemius externus" EXACT [] +is_a: UBERON:0004256 ! hindlimb zeugopod muscle + +[Term] +id: UBERON:0011915 +name: cerebellar glomerulus +def: "An intertwined cluster of nerve fibers surrounded by glia where mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons" [ISBN:0838580343, MP:0004099] +subset: pheno_slim +synonym: "cerebellar glomeruli" EXACT PLURAL [] +xref: EMAPA:37812 {source="MA:th"} +xref: NIF_Subcellular:nlx_subcell_20090502 +is_a: UBERON:0001047 ! neural glomerulus +intersection_of: UBERON:0001047 ! neural glomerulus +intersection_of: part_of UBERON:0002037 ! cerebellum +relationship: part_of UBERON:0002956 ! granular layer of cerebellar cortex + +[Term] +id: UBERON:0011917 +name: thalamic glomerulus +def: "Synaptic structure found in thalamic relay nuclei consising of a complex of afferent terminals, relay cell dendrites, interneuron dendrites and other processes. These complexes are surrounded by astrocytic processes." [NIF_Subcellular:nlx_subcell_20090504] +synonym: "thalamic glomeruli" EXACT PLURAL [] +xref: NIF_Subcellular:nlx_subcell_20090504 +is_a: UBERON:0001047 ! neural glomerulus +intersection_of: UBERON:0001047 ! neural glomerulus +intersection_of: part_of UBERON:0001897 ! dorsal plus ventral thalamus +relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus + +[Term] +id: UBERON:0011918 +name: line of Schwalbe +def: "The thickened peripheral margin of the vitreous membrane of the cornea." [MP:0006250] +subset: pheno_slim +synonym: "Schwalbe line" EXACT [FMA:58422] +synonym: "Schwalbe's line" EXACT [FMA:58422] +synonym: "Schwalbe's ring" EXACT [MP:0006250] +xref: EMAPA:37895 {source="MA:th"} +xref: FMA:58422 +is_a: UBERON:0006800 {source="FMA"} ! anatomical line +relationship: contributes_to_morphology_of UBERON:0005969 ! eye trabecular meshwork +relationship: part_of UBERON:0000964 ! cornea +relationship: part_of UBERON:0005969 {source="MP"} ! eye trabecular meshwork + +[Term] +id: UBERON:0011919 +name: yolk sac blood island +def: "masses of developing blood cells attached to endothelium in the yolk sac" [MP:0011204] +subset: pheno_slim +synonym: "visceral yolk sac blood island" EXACT [MP:0011204] +synonym: "yolk sac blood islands" EXACT [EHDAA2:0000177] +xref: EHDAA2:0000177 +xref: EMAPA:16115 +is_a: UBERON:0000478 ! extraembryonic structure +is_a: UBERON:0003061 ! blood island +intersection_of: UBERON:0003061 ! blood island +intersection_of: part_of UBERON:0003316 ! mesenchyme of yolk sac +relationship: develops_from UBERON:0003316 {source="EHDAA2"} ! mesenchyme of yolk sac +relationship: part_of UBERON:0003316 ! mesenchyme of yolk sac + +[Term] +id: UBERON:0011921 +name: connecting stalk blood islands +synonym: "blood island of umbilical vesicle" EXACT [http://en.wikipedia.org/wiki/Blood_island] +synonym: "insula sanguinea vesiculae umbilicalis" EXACT [http://en.wikipedia.org/wiki/Blood_island] +xref: EHDAA2:0003242 +is_a: UBERON:0007503 {source="EHDAA2"} ! epithelial vesicle +is_a: UBERON:0010303 ! extraembryonic epithelium +is_a: UBERON:0012275 ! meso-epithelium +relationship: develops_from UBERON:0005667 {source="EHDAA2"} ! connecting stalk mesoderm +relationship: part_of UBERON:0002331 {source="EHDAA2"} ! umbilical cord + +[Term] +id: UBERON:0011922 +name: cochlear basement membrane +def: "The the continuous basement membrane found within the membranous labyrinth of the cochlea, known to extend from the limbus, down to the inner sulcus, across the basilar membrane, up to the external sulcus to the spiral prominence and radiating into the spiral ligament ensheathing the root cell processes" [MP:0004598] +subset: pheno_slim +synonym: "basement membrane of cochlear labyrinth" EXACT [] +synonym: "cochlea basement membrane" EXACT [] +xref: EMAPA:37830 {source="MA:th"} +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005769 ! basement membrane of epithelium +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0005769 ! basement membrane of epithelium +intersection_of: part_of UBERON:0002499 ! cochlear labyrinth +relationship: part_of UBERON:0002499 ! cochlear labyrinth + +[Term] +id: UBERON:0011924 +name: postganglionic autonomic fiber +def: "Nerve fibers which project from cell bodies of autonomic ganglia to synapses on target organs." [http://en.wikipedia.org/wiki/Postganglionic_nerve_fibers, MESH:A08.663.542.100] +synonym: "postganglionic autonomic fibre" RELATED [] +synonym: "postganglionic nerve fiber" EXACT [FMA:5924] +xref: FMA:5924 +xref: http://en.wikipedia.org/wiki/Postganglionic_nerve_fibers +xref: http://linkedlifedata.com/resource/umls/id/C0004384 +xref: MESH:A08.663.542.100 +xref: NCIT:C12648 +xref: UMLS:C0004384 {source="ncithesaurus:Postganglionic_Autonomic_Fiber"} +is_a: UBERON:0003041 ! trigeminal nerve fibers +intersection_of: UBERON:0006134 ! nerve fiber +intersection_of: extends_fibers_into UBERON:0001805 ! autonomic ganglion +intersection_of: extends_fibers_into UBERON:0012453 ! nerve ending +relationship: extends_fibers_into UBERON:0001805 ! autonomic ganglion +relationship: extends_fibers_into UBERON:0012453 ! nerve ending +relationship: part_of UBERON:0034728 ! autonomic nerve + +[Term] +id: UBERON:0011925 +name: preganglionic autonomic fiber +def: "Nerve fibers which project from the central nervous system to autonomic ganglia. In the sympathetic division most preganglionic fibers originate with neurons in the intermediolateral column of the spinal cord, exit via ventral roots from upper thoracic through lower lumbar segments, and project to the paravertebral ganglia; there they either terminate in synapses or continue through the splanchnic nerves to the prevertebral ganglia. In the parasympathetic division the fibers originate in neurons of the brain stem and sacral spinal cord. In both divisions the principal transmitter is acetylcholine but peptide cotransmitters may also be released." [http://en.wikipedia.org/wiki/Preganglionic_nerve_fibers, MESH:A08.663.542.122] +synonym: "preganglionic autonomic fibre" RELATED [] +synonym: "preganglionic nerve fiber" EXACT [FMA:5923] +xref: FMA:5923 +xref: http://en.wikipedia.org/wiki/Preganglionic_nerve_fibers +xref: MESH:A08.663.542.122 +xref: NCIT:C12624 +is_a: UBERON:0003041 ! trigeminal nerve fibers +intersection_of: UBERON:0006134 ! nerve fiber +intersection_of: extends_fibers_into UBERON:0001017 ! central nervous system +intersection_of: extends_fibers_into UBERON:0001805 ! autonomic ganglion +relationship: extends_fibers_into UBERON:0001017 ! central nervous system +relationship: extends_fibers_into UBERON:0001805 ! autonomic ganglion +relationship: part_of UBERON:0034728 ! autonomic nerve + +[Term] +id: UBERON:0011926 +name: postganglionic sympathetic fiber +def: "A noradrenergic or adrenergic axonal fiber projecting from a sympathetic ganglion to an effector organ" [MP:0008312] +synonym: "postganglionic sympathetic fiber" RELATED [MESH:A08.663.542.075.800] +synonym: "sympathetic postganglionic fiber" RELATED [MP:0008312] +xref: http://linkedlifedata.com/resource/umls/id/C0206254 +xref: http://www.snomedbrowser.com/Codes/Details/323617002 +xref: MESH:A08.663.542.075.800 +xref: NCIT:C12650 +xref: Postganglionic:fibers +xref: UMLS:C0206254 {source="ncithesaurus:Postganglionic_Sympathetic_Fiber"} +is_a: UBERON:0011924 ! postganglionic autonomic fiber +intersection_of: UBERON:0006134 ! nerve fiber +intersection_of: extends_fibers_into UBERON:0001806 ! sympathetic ganglion +intersection_of: extends_fibers_into UBERON:0012453 ! nerve ending +relationship: extends_fibers_into UBERON:0001806 ! sympathetic ganglion +relationship: part_of UBERON:0034729 ! sympathetic nerve + +[Term] +id: UBERON:0011927 +name: preganglionic sympathetic fiber +def: "A cholinergic axonal fiber projecting from the CNS to a sympathetic ganglion" [MP:0008310] +synonym: "sympathetic preganglionic fiber" RELATED [MP:0008310] +xref: http://www.snomedbrowser.com/Codes/Details/323517007 +is_a: UBERON:0011925 ! preganglionic autonomic fiber +intersection_of: UBERON:0006134 ! nerve fiber +intersection_of: extends_fibers_into UBERON:0001017 ! central nervous system +intersection_of: extends_fibers_into UBERON:0001806 ! sympathetic ganglion +relationship: extends_fibers_into UBERON:0001806 ! sympathetic ganglion +relationship: part_of UBERON:0034729 ! sympathetic nerve + +[Term] +id: UBERON:0011929 +name: postganglionic parasympathetic fiber +def: "A cholinergic axonal fiber projecting from a parasympathetic ganglion to an effector organ" [MP:0008313] +synonym: "parasympathetic postganglionic fiber" RELATED [MP:0008313] +xref: http://linkedlifedata.com/resource/umls/id/C0206252 +xref: MESH:A08.663.542.100.700 +xref: NCIT:C12649 +xref: Postganglionic:fibers +xref: UMLS:C0206252 {source="ncithesaurus:Postganglionic_Parasympathetic_Fiber"} +is_a: UBERON:0011924 ! postganglionic autonomic fiber +intersection_of: UBERON:0006134 ! nerve fiber +intersection_of: extends_fibers_into UBERON:0001808 ! parasympathetic ganglion +intersection_of: extends_fibers_into UBERON:0012453 ! nerve ending +relationship: extends_fibers_into UBERON:0001808 ! parasympathetic ganglion +relationship: part_of UBERON:0004293 ! parasympathetic nerve + +[Term] +id: UBERON:0011930 +name: preganglionic parasympathetic fiber +def: "A cholinergic axonal fibers projecting from the CNS to a parasympathetic ganglion" [MP:0008311] +synonym: "parasympathetic preganglionic fiber" RELATED [MP:0008311] +xref: Preganglionic:fibers +is_a: UBERON:0011925 ! preganglionic autonomic fiber +intersection_of: UBERON:0006134 ! nerve fiber +intersection_of: extends_fibers_into UBERON:0001017 ! central nervous system +intersection_of: extends_fibers_into UBERON:0001808 ! parasympathetic ganglion +relationship: extends_fibers_into UBERON:0001808 ! parasympathetic ganglion +relationship: part_of UBERON:0004293 ! parasympathetic nerve + +[Term] +id: UBERON:0011931 +name: nasal hair +def: "Hair in the nose" [http://en.wikipedia.org/wiki/Nasal_hair] +subset: pheno_slim +synonym: "hair of nose" EXACT [FMA:53670] +synonym: "hair of vestibular part of nose" EXACT [FMA:53670] +synonym: "nose hair" EXACT [FMA:53670] +xref: FMA:53670 +xref: http://www.snomedbrowser.com/Codes/Details/368885003 +xref: Nasal:hair +is_a: UBERON:0010171 ! strand of hair of face +intersection_of: UBERON:0001037 ! strand of hair +intersection_of: part_of UBERON:0000004 ! nose +relationship: part_of UBERON:0000004 ! nose + +[Term] +id: UBERON:0011932 +name: pilosebaceous unit +def: "An epidermal invagination that has as parts a hair follicle, a sebaceous gland, and arrector pili muscle" [http://en.wikipedia.org/wiki/Pilosebaceous_unit, ISBN:0123813611, PMCID:PMC3130146] +subset: pheno_slim +synonym: "fabrica pilosebacea" EXACT [http://en.wikipedia.org/wiki/Pilosebaceous_unit] +synonym: "pilo-sebaceous apparatus" EXACT [FMA:70661] +synonym: "pilo-sebaceous unit" EXACT [] +synonym: "pilosebaceous apparatus" EXACT [] +synonym: "pilosebaceous gland" RELATED [FMA:70661] +xref: EMAPA:36582 +xref: FMA:70661 +xref: Pilosebaceous:unit +is_a: UBERON:0000063 ! organ subunit +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: has_part UBERON:0001821 ! sebaceous gland +relationship: has_part UBERON:0002033 ! arrector muscle of hair +relationship: has_part UBERON:0002073 ! hair follicle +relationship: part_of UBERON:0006003 {source="ISBN:0123813611"} ! integumentary adnexa + +[Term] +id: UBERON:0011933 +name: vibrissa unit +def: "A pilosebaceuous unit that contains a strand of virbissa hair (a specialized tactile hair) with the follicle incorporating a blood sinus, heavily innervated by sensory nerves." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "vibrissa" RELATED [MA:0000163] +xref: EMAPA:17529 +xref: MA:0000163 +is_a: UBERON:0011932 ! pilosebaceous unit +intersection_of: UBERON:0011932 ! pilosebaceous unit +intersection_of: has_part UBERON:0006378 ! strand of vibrissa hair +relationship: has_part UBERON:0006378 ! strand of vibrissa hair +relationship: has_part UBERON:0006615 ! venous sinus + +[Term] +id: UBERON:0011936 +name: vibrissa hair bulb +def: "A bulb of hair follicle that is part of a vibrissa unit." [OBOL:automatic] +synonym: "bulb of sinus hair" EXACT [EMAPA:26753] +synonym: "bulb of vibrissa follicle" EXACT [] +synonym: "vibrissa bulb" EXACT [EMAPA:26716] +xref: EMAPA:26716 +xref: MA:0000783 +is_a: UBERON:0005932 ! bulb of hair follicle +intersection_of: UBERON:0005932 ! bulb of hair follicle +intersection_of: part_of UBERON:0011933 ! vibrissa unit +relationship: part_of UBERON:0010419 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! vibrissa follicle + +[Term] +id: UBERON:0011937 +name: vibrissa root sheath +def: "A hair root sheath that is part of a vibrissa unit." [OBOL:automatic] +synonym: "root sheath of sinus hair" EXACT [EMAPA:26765] +synonym: "root sheath of vibrissa" EXACT [] +synonym: "root sheath of vibrissa hair" EXACT [] +xref: EMAPA:26724 +xref: MA:0000784 +is_a: UBERON:0005933 ! hair root sheath +intersection_of: UBERON:0005933 ! hair root sheath +intersection_of: part_of UBERON:0011933 ! vibrissa unit +relationship: part_of UBERON:0011936 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! vibrissa hair bulb + +[Term] +id: UBERON:0011938 +name: vibrissa inner root sheath +def: "A hair inner root sheath that is part of a vibrissa unit." [OBOL:automatic] +xref: EMAPA:36477 +xref: MA:0000785 +is_a: UBERON:0005941 ! hair inner root sheath +is_a: UBERON:0011937 ! vibrissa root sheath +intersection_of: UBERON:0005941 ! hair inner root sheath +intersection_of: part_of UBERON:0011933 ! vibrissa unit + +[Term] +id: UBERON:0011939 +name: vibrissa outer root sheath +def: "A hair outer root sheath that is part of a vibrissa unit." [OBOL:automatic] +xref: EMAPA:36478 +xref: MA:0000786 +is_a: UBERON:0005942 ! hair outer root sheath +is_a: UBERON:0011937 ! vibrissa root sheath +intersection_of: UBERON:0005942 ! hair outer root sheath +intersection_of: part_of UBERON:0011933 ! vibrissa unit + +[Term] +id: UBERON:0011940 +name: arrector pili muscle of vibrissa +def: "An arrector muscle of hair that is part of a vibrissa hair." [OBOL:automatic] +synonym: "arrector pilorum muscle of vibrissa" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: EMAPA:26771 +is_a: UBERON:0002033 ! arrector muscle of hair +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0002033 ! arrector muscle of hair +intersection_of: part_of UBERON:0006378 ! strand of vibrissa hair +relationship: part_of UBERON:0006378 ! strand of vibrissa hair + +[Term] +id: UBERON:0011941 +name: lateral angle of scapula +def: "An angle of the scapula that is broad and bears the glenoid cavity or fossa[WP,unvetted]." [http://en.wikipedia.org/wiki/Lateral_angle_of_scapula] +synonym: "angulus lateralis (scapula)" EXACT [FMA:23249] +synonym: "angulus lateralis scapulae" EXACT LATIN [http://en.wikipedia.org/wiki/Lateral_angle_of_scapula] +synonym: "glenoid angle of scapula" RELATED [http://en.wikipedia.org/wiki/Lateral_angle_of_scapula] +synonym: "head of scapula" RELATED [http://en.wikipedia.org/wiki/Lateral_angle_of_scapula] +synonym: "scapular head" RELATED [FMA:23249] +xref: FMA:23249 +xref: http://en.wikipedia.org/wiki/Lateral_angle_of_scapula +is_a: UBERON:0007172 {source="EMAPA-modified"} ! angle of scapula + +[Term] +id: UBERON:0011942 +name: obsolete adult human +is_obsolete: true + +[Term] +id: UBERON:0011944 +name: subintestinal vein +subset: dubious_grouping +synonym: "SIV" EXACT [ZFA:0005035] +synonym: "vitelline vein" RELATED INCONSISTENT [ZFA:0005035] +xref: TAO:0005035 +xref: XAO:0004172 +xref: ZFA:0005035 +is_a: UBERON:0001638 {source="XAO"} ! vein + +[Term] +id: UBERON:0011945 +name: luminal layer of epithelium +is_a: UBERON:0005162 ! multi cell part structure +relationship: part_of UBERON:0000483 ! epithelium + +[Term] +id: UBERON:0011946 +name: subluminal layer of epithelium +is_a: UBERON:0005162 ! multi cell part structure +relationship: part_of UBERON:0000483 ! epithelium + +[Term] +id: UBERON:0011947 +name: ureter luminal urothelium +def: "A luminal layer of epithelium that is part of a ureter." [OBOL:automatic] +subset: pheno_slim +xref: EMAPA:37779 {source="MA:th"} +xref: MA:0002656 +is_a: UBERON:0011945 ! luminal layer of epithelium +intersection_of: UBERON:0011945 ! luminal layer of epithelium +intersection_of: part_of UBERON:0000056 ! ureter +relationship: part_of UBERON:0001254 ! urothelium of ureter + +[Term] +id: UBERON:0011948 +name: ureter subluminal urothelium +xref: EMAPA:37780 {source="MA:th"} +xref: MA:0002657 +is_a: UBERON:0011946 ! subluminal layer of epithelium +relationship: part_of UBERON:0001254 ! urothelium of ureter + +[Term] +id: UBERON:0011949 +name: endometrium luminal epithelium +def: "A luminal layer of epithelium that is part of a endometrium epithelium." [OBOL:automatic] +xref: EMAPA:35309 +xref: MA:0002733 +is_a: UBERON:0011945 ! luminal layer of epithelium +intersection_of: UBERON:0011945 ! luminal layer of epithelium +intersection_of: part_of UBERON:0004811 ! endometrium epithelium +relationship: part_of UBERON:0004811 ! endometrium epithelium + +[Term] +id: UBERON:0011950 +name: mammary gland luminal epithelium +def: "The inner cell layer of the mammary epithelium bilayer that lines the luminal surface of mammary gland ducts and alveoli; luminal cells have only limited contact with the underlying basement membrane and surrounding connective tissue; they are secretory epithelial cells characterized by the expression of the receptors for systemic hormones, i.e. estrogens, progesterone and prolactin." [MGI:anna] +synonym: "lumina layer of epithelium of lactiferous gland" EXACT [FMA:74458] +xref: EMAPA:37902 {source="MA:th"} +xref: FMA:74458 +is_a: UBERON:0011945 ! luminal layer of epithelium +intersection_of: UBERON:0011945 ! luminal layer of epithelium +intersection_of: part_of UBERON:0001911 ! mammary gland +relationship: part_of UBERON:0003244 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! epithelium of mammary gland + +[Term] +id: UBERON:0011951 +name: prostate luminal epithelium +def: "A luminal layer of epithelium that is part of a prostate gland." [OBOL:automatic] +synonym: "subdivision of luminal layer of epithelium of prostatic gland" EXACT [FMA:74262] +xref: FMA:74262 +is_a: UBERON:0011945 ! luminal layer of epithelium +intersection_of: UBERON:0011945 ! luminal layer of epithelium +intersection_of: part_of UBERON:0002367 ! prostate gland +relationship: part_of UBERON:0000428 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! prostate epithelium + +[Term] +id: UBERON:0011952 +name: non-glandular epithelium +is_a: UBERON:0000483 ! epithelium + +[Term] +id: UBERON:0011953 +name: stomach glandular region +def: "A region of the stomach that is lined with glandular epithelium." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "glandular stomach" RELATED [] +xref: EMAPA:17623 +xref: http://linkedlifedata.com/resource/umls/id/C0227197 +xref: http://www.snomedbrowser.com/Codes/Details/27633001 +xref: MA:0001613 +xref: NCIT:C77661 +xref: UMLS:C0227197 {source="ncithesaurus:Glandular_Stomach"} +is_a: UBERON:0009870 ! zone of stomach +intersection_of: UBERON:0009870 ! zone of stomach +intersection_of: has_part UBERON:0006924 ! stomach glandular epithelium +relationship: has_part UBERON:0006924 ! stomach glandular epithelium + +[Term] +id: UBERON:0011954 +name: stomach non-glandular region +def: "A region of the stomach is lined with non-glandular epithelium. Examples of a stomach non-glandular region are found in rodents." [http://orcid.org/0000-0002-6601-2165] +synonym: "stomach cutaneous region" RELATED [EMAPA:17627] +synonym: "stomach ependymal region" RELATED [EMAPA:17627] +xref: EMAPA:17627 +xref: MA:0001625 +xref: NCIT:C77662 +is_a: UBERON:0009870 ! zone of stomach +intersection_of: UBERON:0009870 ! zone of stomach +intersection_of: has_part UBERON:0010040 ! stomach non-glandular epithelium +relationship: has_part UBERON:0010040 ! stomach non-glandular epithelium + +[Term] +id: UBERON:0011955 +name: left hepatic vein +def: "A hepatic vein that is part of a left lobe of liver." [OBOL:automatic] +xref: EMAPA:37164 {source="MA:th"} +xref: FMA:14339 +xref: http://www.snomedbrowser.com/Codes/Details/55188000 +xref: MA:0003032 +is_a: UBERON:0001143 ! hepatic vein +intersection_of: UBERON:0001143 ! hepatic vein +intersection_of: part_of UBERON:0001115 ! left lobe of liver +relationship: part_of UBERON:0001115 ! left lobe of liver + +[Term] +id: UBERON:0011956 +name: right hepatic vein +def: "A hepatic vein that is part of a right lobe of liver." [OBOL:automatic] +xref: EMAPA:37377 {source="MA:th"} +xref: FMA:14338 +xref: http://www.snomedbrowser.com/Codes/Details/18135006 +xref: MA:0003034 +is_a: UBERON:0001143 ! hepatic vein +intersection_of: UBERON:0001143 ! hepatic vein +intersection_of: part_of UBERON:0001114 ! right lobe of liver +relationship: part_of UBERON:0001114 ! right lobe of liver + +[Term] +id: UBERON:0011957 +name: middle hepatic vein +xref: EMAPA:37175 {source="MA:th"} +xref: FMA:14340 +xref: http://www.snomedbrowser.com/Codes/Details/54895000 +xref: MA:0003033 +is_a: UBERON:0001143 ! hepatic vein + +[Term] +id: UBERON:0011958 +name: acetabular labrum +def: "A ring of cartilage that surrounds the acetabulum[WP,unvetted]." [http://en.wikipedia.org/wiki/Acetabular_labrum] +synonym: "acetabular lip" RELATED [] +synonym: "acetabular rim" RELATED INCONSISTENT [AAO:0000864] +synonym: "cotyloid ligament" RELATED [http://en.wikipedia.org/wiki/Acetabular_labrum] +synonym: "glenoidal labrum of hip joint" RELATED [http://en.wikipedia.org/wiki/Acetabular_labrum] +synonym: "labrum acetabuli" EXACT LATIN [http://en.wikipedia.org/wiki/Acetabular_labrum] +synonym: "labrum of acetabulum" EXACT [FMA:43521] +xref: AAO:0000864 +xref: Acetabular:labrum +xref: FMA:43521 +xref: http://www.snomedbrowser.com/Codes/Details/182439007 +xref: http://www.snomedbrowser.com/Codes/Details/263366005 +is_a: UBERON:0005179 ! pelvic region element +is_a: UBERON:0007844 {source="FMA"} ! cartilage element +relationship: attaches_to UBERON:0006802 ! acetabular rim +relationship: part_of UBERON:0001486 {source="FMA"} ! hip joint +relationship: surrounds UBERON:0001269 ! acetabular part of hip bone + +[Term] +id: UBERON:0011959 +name: glenoid labrum of scapula +def: "A ring of fibrocartilage attached to the margin of the glenoid cavity of the scapula." [http://en.wikipedia.org/wiki/Glenoid_labrum, http://www.medilexicon.com/medicaldictionary.php?t=47475] +synonym: "glenoid labrum" BROAD [] +synonym: "glenoidal labrum" BROAD [] +synonym: "glenoidal labrum of glenohumeral joint" EXACT [] +synonym: "glenoidal labrum of scapula" EXACT [] +synonym: "labrum glenoidale" EXACT LATIN [] +synonym: "labrum glenoidale scapulae" RELATED [http://www.medilexicon.com/medicaldictionary.php?t=47475] +xref: FMA:23290 +xref: http://www.snomedbrowser.com/Codes/Details/182391008 +is_a: UBERON:0007844 {source="FMA"} ! cartilage element +relationship: part_of UBERON:0001470 {source="FMA"} ! glenohumeral joint + +[Term] +id: UBERON:0011960 +name: articular capsule of glenohumeral joint +def: "An articular capsule that is part of the glenohumeral joint." [http://orcid.org/0000-0002-6601-2165] +synonym: "articular capsule of humerus" EXACT [http://en.wikipedia.org/wiki/Articular_capsule_of_the_humerus] +synonym: "articular capsule of shoulder joint" EXACT [] +synonym: "capsule of shoulder joint" EXACT [FMA:34944] +synonym: "fibrous capsule of glenohumeral joint" EXACT [FMA:34944] +synonym: "glenohumeral joint capsule" RELATED [FMA:34944] +xref: FMA:34944 +xref: http://en.wikipedia.org/wiki/Articular_capsule_of_the_humerus +xref: http://www.snomedbrowser.com/Codes/Details/361836001 +is_a: UBERON:0001484 ! articular capsule +intersection_of: UBERON:0001484 ! articular capsule +intersection_of: part_of UBERON:0001470 ! glenohumeral joint +relationship: part_of UBERON:0001470 ! glenohumeral joint +relationship: surrounds UBERON:0001470 ! glenohumeral joint + +[Term] +id: UBERON:0011961 +name: articular capsule of hip joint +def: "An articular capsule that is part of the hip joint." [http://orcid.org/0000-0002-6601-2165] +synonym: "capsula articularis coxae" EXACT LATIN [http://en.wikipedia.org/wiki/Capsule_of_hip_joint] +synonym: "capsule of hip joint" EXACT [http://en.wikipedia.org/wiki/Capsule_of_hip_joint] +synonym: "fibrous capsule of hip joint" EXACT [FMA:42821] +xref: FMA:42821 +xref: http://en.wikipedia.org/wiki/Capsule_of_hip_joint +xref: http://www.snomedbrowser.com/Codes/Details/263382006 +is_a: UBERON:0001484 ! articular capsule +is_a: UBERON:0005179 ! pelvic region element +intersection_of: UBERON:0001484 ! articular capsule +intersection_of: part_of UBERON:0001486 ! hip joint +relationship: part_of UBERON:0001486 ! hip joint +relationship: surrounds UBERON:0001486 ! hip joint + +[Term] +id: UBERON:0011962 +name: transverse tarsal joint +def: "The transverse tarsal joint is formed by the articulation of the calcaneus with the cuboid, and the articulation of the talus with the navicular. The movement which takes place in this joint is more extensive than that in the other tarsal joints, and consists of a sort of rotation by means of which the foot may be slightly flexed or extended, the sole being at the same time carried medially (inverted) or laterally." [http://en.wikipedia.org/wiki/Transverse_tarsal_joint] +synonym: "articulatio tarsi transversa" EXACT [http://en.wikipedia.org/wiki/Transverse_tarsal_joint] +synonym: "chopart's joint" EXACT [FMA:35201] +synonym: "midtarsal joint" EXACT [http://en.wikipedia.org/wiki/Transverse_tarsal_joint] +xref: FMA:35201 +xref: http://en.wikipedia.org/wiki/Transverse_tarsal_joint +xref: http://www.snomedbrowser.com/Codes/Details/182220000 +xref: NCIT:C102354 +is_a: UBERON:0001487 ! pes joint + +[Term] +id: UBERON:0011963 +name: talocalcaneonavicular joint +def: "The talocalcaneonavicular articulation is an arthrodial joint: the rounded head of the talus being received into the concavity formed by the posterior surface of the navicular, the anterior articular surface of the calcaneus, and the upper surface of the plantar calcaneonavicular ligament. There are two ligaments in this joint: the articular capsule and the dorsal talonavicular." [http://en.wikipedia.org/wiki/Talocalcaneonavicular_articulation] +synonym: "articulatio talocalcaneonavicularis" EXACT LATIN [http://en.wikipedia.org/wiki/Talocalcaneonavicular_articulation] +synonym: "talocalcaneonavicular articulation" EXACT [http://en.wikipedia.org/wiki/Talocalcaneonavicular_articulation] +xref: FMA:35204 +xref: http://www.snomedbrowser.com/Codes/Details/182211009 +xref: Talocalcaneonavicular:articulation +is_a: UBERON:0003698 ! subtalar joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001450 ! calcaneus +intersection_of: connects UBERON:0001451 ! navicular bone of pes +intersection_of: connects UBERON:0002395 ! talus +relationship: connects UBERON:0001451 ! navicular bone of pes +relationship: part_of UBERON:0011962 {source="FMA-modified"} ! transverse tarsal joint + +[Term] +id: UBERON:0011964 +name: calcaneocuboid joint +def: "Calcaneocuboid Articulation (articulation of the calcaneus with the cuboid). The ligaments connecting the calcaneus with the cuboid are five in number, viz. , the articular capsule, the dorsal calcaneocuboid, part of the bifurcated, the long plantar, and the plantar calcaneocuboid." [http://en.wikipedia.org/wiki/Calcaneocuboid_articulation] +synonym: "articulatio calcaneocubiodea" EXACT LATIN [FMA:35207] +synonym: "calcaneocuboid articulation" EXACT [http://en.wikipedia.org/wiki/Calcaneocuboid_articulation] +synonym: "calcaneocuboidal joint" EXACT [] +xref: Calcaneocuboid:articulation +xref: FMA:35207 +xref: http://www.snomedbrowser.com/Codes/Details/361866008 +is_a: UBERON:0011969 ! mesotarsal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001450 ! calcaneus +intersection_of: connects UBERON:0001455 ! cuboid bone +relationship: connects UBERON:0001450 ! calcaneus +relationship: connects UBERON:0001455 ! cuboid bone +relationship: part_of UBERON:0011962 {source="FMA-modified"} ! transverse tarsal joint + +[Term] +id: UBERON:0011965 +name: saddle joint +def: "In a saddle joint (sellar joint, articulation by reciprocal reception) the opposing surfaces are reciprocally concave-convex." [http://en.wikipedia.org/wiki/Saddle_joint] +synonym: "articulation by reciprocal reception" RELATED [http://en.wikipedia.org/wiki/Saddle_joint] +synonym: "sellar joint" EXACT [http://en.wikipedia.org/wiki/Saddle_joint] +xref: FMA:75298 +xref: http://www.snomedbrowser.com/Codes/Details/23059003 +xref: Saddle:joint +is_a: UBERON:0000982 ! skeletal joint + +[Term] +id: UBERON:0011966 +name: manubriosternal joint +def: "The early union, by hyaline cartilage, of the manubrium and the body of the sternum, which later becomes a symphysial type of joint." [http://en.wikipedia.org/wiki/Sternal_angle, http://www.medilexicon.com/medicaldictionary.php?t=46395] +synonym: "angle of louis" RELATED [http://en.wikipedia.org/wiki/Sternal_angle] +synonym: "angulus ludovici" RELATED [http://en.wikipedia.org/wiki/Sternal_angle] +synonym: "angulus sternalis" RELATED [http://en.wikipedia.org/wiki/Sternal_angle] +synonym: "angulus sterni" RELATED [http://en.wikipedia.org/wiki/Sternal_angle] +synonym: "manubriosternal joint" RELATED [http://en.wikipedia.org/wiki/Sternal_angle] +synonym: "manubriosternal junction" RELATED [http://en.wikipedia.org/wiki/Sternal_angle] +synonym: "manubriosternal symphysis" EXACT [FMA:7502] +synonym: "manubro-sterno junction" RELATED [http://en.wikipedia.org/wiki/Sternal_angle] +xref: FMA:7502 +xref: http://www.snomedbrowser.com/Codes/Details/263312002 +xref: Sternal:angle +is_a: UBERON:0002216 {source="FMA"} ! symphysis +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0002205 ! manubrium of sternum +intersection_of: connects UBERON:0006820 ! body of sternum +relationship: connects UBERON:0002205 ! manubrium of sternum +relationship: connects UBERON:0006820 ! body of sternum + +[Term] +id: UBERON:0011967 +name: costotransverse joint +def: "The facet of the tubercle of the rib forms an articulation with the adjacent transverse process of a thoracic vertebra. This is a plane type synovial joint called the costotransverse joint. This articulation is present in all but the eleventh and twelfth ribs. Ribs 1 to 10 have two joints in close proximity posteriorly; the costovertebral joints and the costotranseverse joints. This arrangement restrains the motion of the ribs allowing them to work in a parallel fashion during breathing. If a typical rib had only one joint posteriorly the resultant swivel action would allow a rib to be non-parallel with respect to the neighboring ribs making for a very inefficient respiratory mechanism. The ventral rami innervate the costotransverse joints. Therefore, therapeutic medial branch blocks are ineffectual. The ligaments of the joint are: Articular capsule Posterior costotransverse Anterior costotransverse Ligament of the neck of the rib Ligament of the tubercle of the rib" [http://en.wikipedia.org/wiki/Costotransverse_joint] +synonym: "costotransverse articulation" RELATED [http://en.wikipedia.org/wiki/Costotransverse_joint] +xref: Costotransverse:joint +xref: FMA:7952 +xref: http://www.snomedbrowser.com/Codes/Details/263328007 +is_a: UBERON:0002292 {source="FMA"} ! costovertebral joint +relationship: part_of UBERON:0003252 {source="FMA"} ! thoracic rib cage + +[Term] +id: UBERON:0011968 +name: radio-carpal joint +def: "A skeletal joint that connects a radius bone and connects a carpal skeleton." [OBOL:automatic] +synonym: "articulatio radiocarpea" EXACT LATIN [http://en.wikipedia.org/wiki/Wrist] +synonym: "radiocarpal articulation" EXACT [http://en.wikipedia.org/wiki/Wrist] +synonym: "radiocarpal joint" EXACT [] +synonym: "wrist joint" BROAD INCONSISTENT [FMA:35291] +xref: EMAPA:19205 +xref: FMA:35291 +xref: http://www.snomedbrowser.com/Codes/Details/361839008 +xref: MA:0000461 +is_a: UBERON:0001491 {source="MA"} ! wrist joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001423 ! radius bone +intersection_of: connects UBERON:0009880 ! carpal skeleton +relationship: connects UBERON:0001423 ! radius bone + +[Term] +id: UBERON:0011969 +name: mesotarsal joint +def: "An ankle joint that passes between the proximal and distal tarsals." [http://palaeos.com/vertebrates/glossary/glossaryM.html] +comment: Calcaneus and astragalus are interlocked, line of flexion is distal to them[Kardong] +is_a: UBERON:0001487 ! pes joint +is_a: UBERON:0011980 ! crurotarsal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0010721 ! distal tarsal bone +intersection_of: connects UBERON:0011679 ! proximal tarsal bone +relationship: connects UBERON:0010721 ! distal tarsal bone +relationship: part_of UBERON:0004454 ! tarsal region + +[Term] +id: UBERON:0011970 +name: talofibular ligament +def: "A skeletal ligament that connects the fibula to the talus. Examples: anterior and posterior talofibular ligament" [http://orcid.org/0000-0002-6601-2165] +synonym: "ligamentum talofibulare" EXACT LATIN [http://en.wikipedia.org/wiki/Talofibular_ligament] +synonym: "talo-fibular ligament" EXACT [] +xref: FMA:44080 +xref: http://www.snomedbrowser.com/Codes/Details/244649001 +xref: Talofibular:ligament +is_a: UBERON:0008846 ! skeletal ligament +intersection_of: UBERON:0008846 ! skeletal ligament +intersection_of: connects UBERON:0001446 ! fibula +intersection_of: connects UBERON:0002395 ! talus +relationship: connects UBERON:0001446 ! fibula +relationship: connects UBERON:0002395 ! talus +relationship: connects UBERON:0012291 ! lateral malleolus of fibula +relationship: part_of UBERON:0001488 ! ankle joint + +[Term] +id: UBERON:0011971 +name: calcaneofibular ligament +def: "A skeletal ligament that connects the fibula to the calcaneus" [http://en.wikipedia.org/wiki/Calcaneofibular_ligament] +synonym: "ligamentum calcaneofibulare" EXACT LATIN [http://en.wikipedia.org/wiki/Calcaneofibular_ligament] +xref: Calcaneofibular:ligament +xref: FMA:44089 +xref: http://www.snomedbrowser.com/Codes/Details/244650001 +is_a: UBERON:0003701 ! calcaneal tendon +intersection_of: UBERON:0008846 ! skeletal ligament +intersection_of: connects UBERON:0001446 ! fibula +intersection_of: connects UBERON:0001450 ! calcaneus +relationship: connects UBERON:0001446 ! fibula +relationship: part_of UBERON:0001488 ! ankle joint + +[Term] +id: UBERON:0011972 +name: medial ligament of ankle joint +def: "A skeletal ligament that connects a tibia and connects a tarsal skeleton." [OBOL:automatic] +synonym: "deltoid collateral ligament of ankle joint" EXACT [FMA:44055] +synonym: "deltoid ligament of ankle joint" EXACT [FMA:44055] +synonym: "ligamentum collaterale mediale (articulatio talocruralis)" EXACT [FMA:44055] +synonym: "ligamentum collaterale mediale articulationis talocruralis" EXACT LATIN [FMA:44055, FMA:TA] +synonym: "ligamentum deltoideum" EXACT [FMA:TA] +synonym: "ligamentum deltoideum (articulatio talocruralis)" EXACT [FMA:44055] +synonym: "medial collateral ligament of ankle joint" EXACT [FMA:44055] +xref: FMA:44055 +xref: http://www.snomedbrowser.com/Codes/Details/41159004 +is_a: UBERON:0008846 ! skeletal ligament +intersection_of: UBERON:0008846 ! skeletal ligament +intersection_of: connects UBERON:0000979 ! tibia +intersection_of: connects UBERON:0009879 ! tarsal skeleton +relationship: connects UBERON:0000979 ! tibia +relationship: connects UBERON:0009879 ! tarsal skeleton +relationship: part_of UBERON:0001488 ! ankle joint + +[Term] +id: UBERON:0011973 +name: epiphysis of phalanx of pes +def: "An epiphysis that is part of a phalanx of a pes [Automatically generated definition]." [OBOL:automatic] +synonym: "epiphysis of phalanx of toe" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/314621001 +is_a: UBERON:0001437 ! epiphysis +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0002387 ! pes +relationship: part_of UBERON:0002387 ! pes + +[Term] +id: UBERON:0011974 +name: epiphysis of proximal phalanx of pes +def: "An epiphysis that is part of a proximal phalanx of pes." [OBOL:automatic] +synonym: "epiphysis of proximal phalanx of toe" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/280047006 +is_a: UBERON:0004446 ! epiphysis of phalanx +is_a: UBERON:0011973 ! epiphysis of phalanx of pes +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0003868 ! proximal phalanx of pes +relationship: part_of UBERON:0003868 ! proximal phalanx of pes + +[Term] +id: UBERON:0011975 +name: epiphysis of middle phalanx of pes +def: "An epiphysis that is part of a middle phalanx of pes." [OBOL:automatic] +synonym: "epiphysis of middle phalanx of toe" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/280048001 +is_a: UBERON:0004446 ! epiphysis of phalanx +is_a: UBERON:0011973 ! epiphysis of phalanx of pes +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0003866 ! middle phalanx of pes +relationship: part_of UBERON:0003866 ! middle phalanx of pes + +[Term] +id: UBERON:0011976 +name: epiphysis of distal phalanx of pes +def: "An epiphysis that is part of a distal phalanx of pes." [OBOL:automatic] +synonym: "epiphysis of distal phalanx of toe" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/280049009 +is_a: UBERON:0004446 ! epiphysis of phalanx +is_a: UBERON:0011973 ! epiphysis of phalanx of pes +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0003867 ! distal phalanx of pes +relationship: part_of UBERON:0003867 ! distal phalanx of pes + +[Term] +id: UBERON:0011977 +name: epiphysis of proximal phalanx of manus +def: "An epiphysis that is part of a proximal phalanx of manus." [OBOL:automatic] +subset: pheno_slim +synonym: "epiphysis of proximal phalanx of finger" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/280044004 +is_a: UBERON:0004387 ! epiphysis of phalanx of manus +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0002234 ! proximal phalanx of manus +relationship: part_of UBERON:0002234 ! proximal phalanx of manus + +[Term] +id: UBERON:0011978 +name: epiphysis of middle phalanx of manus +def: "An epiphysis that is part of a middle phalanx of manus." [OBOL:automatic] +synonym: "epiphysis of middle phalanx of finger" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/280045003 +is_a: UBERON:0004387 ! epiphysis of phalanx of manus +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0003864 ! middle phalanx of manus +relationship: part_of UBERON:0003864 ! middle phalanx of manus + +[Term] +id: UBERON:0011979 +name: epiphysis of distal phalanx of manus +def: "An epiphysis that is part of a distal phalanx of manus." [OBOL:automatic] +synonym: "epiphysis of distal phalanx of finger" EXACT [] +xref: FMA:321561 +xref: http://www.snomedbrowser.com/Codes/Details/280046002 +is_a: UBERON:0004387 ! epiphysis of phalanx of manus +intersection_of: UBERON:0001437 ! epiphysis +intersection_of: part_of UBERON:0003865 ! distal phalanx of manus +relationship: part_of UBERON:0003865 ! distal phalanx of manus + +[Term] +id: UBERON:0011980 +name: crurotarsal joint +def: "A joint that connects the bones of the crus to the proximal tarsal bones" [http://en.wikipedia.org/wiki/Crurotarsal] +comment: line of flexion between calcaneus and astragalus +synonym: "crurotarsal" RELATED [] +xref: http://en.wikipedia.org/wiki/Crurotarsal +is_a: UBERON:0001488 ! ankle joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0010720 ! hindlimb zeugopod skeleton +intersection_of: connects UBERON:0011679 ! proximal tarsal bone +relationship: connects UBERON:0011679 ! proximal tarsal bone + +[Term] +id: UBERON:0011981 +name: manual digit 6 +comment: Found in Acanthostega +synonym: "6th finger" EXACT [] +synonym: "fore digit VI" EXACT [] +synonym: "fore limb digit 6" EXACT [OBOL:accepted] +synonym: "hand digit 6" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit VI" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "sixth finger" EXACT [] +is_a: UBERON:0002389 ! manual digit +is_a: UBERON:0016856 ! digit 6 +intersection_of: UBERON:0002389 ! manual digit +intersection_of: part_of UBERON:5011981 ! manual digit 6 plus metapodial segment +relationship: part_of UBERON:5011981 ! manual digit 6 plus metapodial segment + +[Term] +id: UBERON:0011982 +name: manual digit 7 +comment: Found in Acanthostega +synonym: "fore digit VII" EXACT [] +synonym: "fore limb digit 7" EXACT [OBOL:accepted] +synonym: "hand digit 7" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit VII" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "seventh finger" EXACT [] +is_a: UBERON:0002389 ! manual digit +is_a: UBERON:0016857 ! digit 7 +intersection_of: UBERON:0002389 ! manual digit +intersection_of: part_of UBERON:5011982 ! manual digit 7 plus metapodial segment +relationship: part_of UBERON:5011982 ! manual digit 7 plus metapodial segment + +[Term] +id: UBERON:0011983 +name: manual digit 8 +comment: Found in Acanthostega +synonym: "eighth finger" EXACT [] +synonym: "fore digit VIII" EXACT [] +synonym: "fore limb digit 8" EXACT [OBOL:accepted] +synonym: "hand digit 8" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "manual digit VIII" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0002389 ! manual digit +is_a: UBERON:0016858 ! digit 8 +intersection_of: UBERON:0002389 ! manual digit +intersection_of: part_of UBERON:5011983 ! manual digit 8 plus metapodial segment +relationship: part_of UBERON:5011983 ! manual digit 8 plus metapodial segment + +[Term] +id: UBERON:0011984 +name: pedal digit 6 +synonym: "digitus sextus pedis" EXACT LATIN [] +synonym: "foot digit 6" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind digit 6" EXACT [] +synonym: "hind digit VI" EXACT [] +synonym: "hind limb digit 6" EXACT [OBOL:accepted] +synonym: "pedal digit VI" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "pes digit VI" EXACT [] +synonym: "sixth toe" EXACT [] +synonym: "toe 6" EXACT [] +is_a: UBERON:0001466 ! pedal digit +intersection_of: UBERON:0001466 ! pedal digit +intersection_of: part_of UBERON:5011984 ! pedal digit 6 plus metapodial segment +relationship: part_of UBERON:5011984 ! pedal digit 6 plus metapodial segment + +[Term] +id: UBERON:0011985 +name: infraorbital sinus +def: "An air-filled recess in the head of birds which lies lateral to the nasal cavity into which it opens" [http://medical-dictionary.thefreedictionary.com/infraorbital+sinus] +synonym: "sinus infraorbitalis" EXACT LATIN [] +is_a: UBERON:0001825 ! paranasal sinus + +[Term] +id: UBERON:0011986 +name: mucosa of infraorbital sinus +def: "A mucosa that adjacent_to a infraorbital sinus." [OBOL:automatic] +synonym: "infraorbital sinus mucosa" EXACT [OBOL:automatic] +is_a: UBERON:0005030 ! mucosa of paranasal sinus +intersection_of: UBERON:0000344 ! mucosa +intersection_of: adjacent_to UBERON:0011985 ! infraorbital sinus +relationship: adjacent_to UBERON:0011985 ! infraorbital sinus + +[Term] +id: UBERON:0011996 +name: pharyngeal adductor +synonym: "adductors" RELATED PLURAL [ZFA:0000463] +xref: TAO:0000463 +xref: ZFA:0000463 +is_a: UBERON:0000933 {source="ZFA"} ! pharyngeal muscle + +[Term] +id: UBERON:0011997 +name: coelom +def: "The aggregate of the coelemic cavity lumen plus the membranes that line the lumen." [http://en.wikipedia.org/wiki/Body_cavity, http://en.wikipedia.org/wiki/Coelom, UBERON:cjm] +synonym: "coelem" RELATED [] +synonym: "coelomic cavity" RELATED [EHDAA2:0004731] +synonym: "enterocoelom" NARROW [NCBITaxon:33511] +synonym: "haemocoelom" NARROW [] +synonym: "schizocoelom" NARROW [] +xref: EHDAA2:0004731 +xref: http://en.wikipedia.org/wiki/Coelom +is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure + +[Term] +id: UBERON:0012054 +name: myocoele +def: "The cavity within a myotome" [http://medical-dictionary.thefreedictionary.com/myocoele] +xref: EMAPA:31134 +xref: VHOG:0001283 +is_a: UBERON:0002553 ! anatomical cavity +intersection_of: UBERON:0002553 ! anatomical cavity +intersection_of: luminal_space_of UBERON:0003082 ! myotome +relationship: luminal_space_of UBERON:0003082 ! myotome +relationship: part_of UBERON:0003082 ! myotome + +[Term] +id: UBERON:0012055 +name: left lung lower lobe bronchiole +def: "A bronchiole that is part of a lower lobe of left lung." [OBOL:automatic] +comment: Mouse has single left lobe +synonym: "bronchiole of left lower lobe" EXACT [] +synonym: "bronchiole of left lower lobe of lung" EXACT [] +synonym: "left lung caudal lobe bronchiole" EXACT [EHDAA2:0000947] +xref: EHDAA2:0000947 +xref: http://www.snomedbrowser.com/Codes/Details/80548008 +is_a: UBERON:0003539 ! left lung bronchiole +intersection_of: UBERON:0002186 ! bronchiole +intersection_of: part_of UBERON:0008953 ! lower lobe of left lung +relationship: part_of UBERON:0008953 ! lower lobe of left lung + +[Term] +id: UBERON:0012056 +name: left lung upper lobe bronchiole +def: "A bronchiole that is part of a upper lobe of left lung." [OBOL:automatic] +comment: Mouse has single left lobe +synonym: "bronchiole of left cranial lobe" EXACT [] +synonym: "bronchiole of left upper lobe" EXACT [] +synonym: "bronchiole of left upper lobe of lung" EXACT [] +synonym: "left lung cranial lobe bronchiole" EXACT [EHDAA2:0000955] +xref: EHDAA2:0000955 +xref: http://www.snomedbrowser.com/Codes/Details/72426004 +is_a: UBERON:0003539 ! left lung bronchiole +intersection_of: UBERON:0002186 ! bronchiole +intersection_of: part_of UBERON:0008952 ! upper lobe of left lung +relationship: part_of UBERON:0008952 ! upper lobe of left lung + +[Term] +id: UBERON:0012059 +name: right lung lower lobe bronchiole +def: "A bronchiole that is part of a lower lobe of right lung." [OBOL:automatic] +synonym: "bronchiole of right cranial lobe" EXACT [] +synonym: "bronchiole of right lower lobe" EXACT [] +synonym: "bronchiole of right lower lobe of lung" EXACT [] +synonym: "right lung caudal lobe bronchiole" EXACT [EHDAA2:0004094] +xref: EHDAA2:0004094 +xref: EMAPA:19004 +xref: http://www.snomedbrowser.com/Codes/Details/15215000 +is_a: UBERON:0003538 ! right lung bronchiole +intersection_of: UBERON:0002186 ! bronchiole +intersection_of: part_of UBERON:0002171 ! lower lobe of right lung +relationship: develops_from UBERON:0005640 {source="EHDAA2"} ! right lung caudal lobe epithelium +relationship: part_of UBERON:0002171 ! lower lobe of right lung + +[Term] +id: UBERON:0012063 +name: lobar bronchus of right lung middle lobe +def: "A lobar bronchus that is part of a middle lobe of right lung." [OBOL:automatic] +synonym: "bronchus of right middle lobe" EXACT [FMA:7401] +synonym: "middle lobar bronchus" EXACT [FMA:7401] +synonym: "middle lobe bronchus" EXACT [FMA:7401] +xref: EMAPA:17998 +xref: FMA:7401 +is_a: UBERON:0003404 ! lobar bronchus of right lung +intersection_of: UBERON:0002183 ! lobar bronchus +intersection_of: part_of UBERON:0002174 ! middle lobe of right lung +relationship: part_of UBERON:0002174 ! middle lobe of right lung + +[Term] +id: UBERON:0012065 +name: lobar bronchus of left lung upper lobe +def: "A lobar bronchus that is part of a upper lobe of left lung." [OBOL:automatic] +synonym: "bronchus of left upper lobe" EXACT [FMA:7423] +synonym: "left superior lobar bronchus" EXACT [FMA:7423] +synonym: "left upper lobar bronchus" EXACT [FMA:7423] +synonym: "left upper lobe bronchus" EXACT [FMA:7423] +xref: FMA:7423 +is_a: UBERON:0003405 ! lobar bronchus of left lung +intersection_of: UBERON:0002183 ! lobar bronchus +intersection_of: part_of UBERON:0008952 ! upper lobe of left lung +relationship: part_of UBERON:0008952 ! upper lobe of left lung + +[Term] +id: UBERON:0012066 +name: lobar bronchus of left lung lower lobe +def: "A lobar bronchus that is part of a lower lobe of left lung." [OBOL:automatic] +synonym: "bronchus of left lower lobe" EXACT [FMA:7432] +synonym: "left inferior lobar bronchus" EXACT [FMA:7432] +synonym: "left lower lobar bronchus" EXACT [FMA:7432] +synonym: "left lower lobe bronchus" EXACT [FMA:7432] +xref: FMA:7432 +xref: http://www.snomedbrowser.com/Codes/Details/361961004 +is_a: UBERON:0003405 ! lobar bronchus of left lung +intersection_of: UBERON:0002183 ! lobar bronchus +intersection_of: part_of UBERON:0008953 ! lower lobe of left lung +relationship: part_of UBERON:0008953 ! lower lobe of left lung + +[Term] +id: UBERON:0012067 +name: primary bronchiole +def: "A bronchiole that arises from a segmental bronchus and does not contain cartilage." [http://en.wikipedia.org/wiki/Bronchiole#Primary_bronchioles, ISBN:0123813611] +synonym: "proximal bronchiole" EXACT [FMA:62510] +xref: FMA:62510 +xref: Primary_bronchioles +is_a: UBERON:0002186 {source="FMA"} ! bronchiole +relationship: proximally_connected_to UBERON:0002184 ! segmental bronchus + +[Term] +id: UBERON:0012068 +name: right lung middle lobe bronchiole +def: "A bronchiole that is part of a middle lobe of right lung." [OBOL:automatic] +synonym: "bronchiole of middle right lobe" EXACT [] +synonym: "bronchiole of right middle lobe" EXACT [] +synonym: "bronchiole of right middle lobe of lung" EXACT [] +xref: EMAPA:19008 +xref: http://www.snomedbrowser.com/Codes/Details/69714005 +is_a: UBERON:0003538 ! right lung bronchiole +intersection_of: UBERON:0002186 ! bronchiole +intersection_of: part_of UBERON:0002174 ! middle lobe of right lung +relationship: part_of UBERON:0002174 ! middle lobe of right lung + +[Term] +id: UBERON:0012069 +name: epithelium-associated lymphoid tissue +xref: FMA:62811 +is_a: UBERON:0001744 {source="FMA"} ! lymphoid tissue + +[Term] +id: UBERON:0012070 +name: palatal tooth +def: "A tooth that is on the roof of the mouth." [http://palaeos.com/vertebrates/therapsida/anteosauria.html] +synonym: "palatal teeth" EXACT PLURAL [] +is_a: UBERON:0003267 ! tooth of upper jaw +intersection_of: UBERON:0001091 ! calcareous tooth +intersection_of: attaches_to UBERON:0012071 ! palate bone +relationship: attaches_to UBERON:0012071 ! palate bone + +[Term] +id: UBERON:0012071 +name: palate bone +def: "Any bone that is part of a palate." [https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "palatal bone" EXACT [] +xref: EMAPA:37930 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1518857 +xref: NCIT:C33248 +xref: UMLS:C1518857 {source="ncithesaurus:Palate_Bone"} +is_a: UBERON:0003457 ! head bone +is_a: UBERON:0008907 ! dermal bone +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0007375 ! roof of mouth +relationship: part_of UBERON:0012072 ! palatal part of dermatocranium + +[Term] +id: UBERON:0012072 +name: palatal part of dermatocranium +synonym: "dermatocranium, palatal series" RELATED [ISBN:0073040584] +synonym: "palatal series" RELATED [ISBN:0073040584] +is_a: UBERON:0000075 ! subdivision of skeletal system +relationship: part_of UBERON:0003113 ! dermatocranium +relationship: part_of UBERON:0007375 ! roof of mouth + +[Term] +id: UBERON:0012073 +name: tooth of palatine bone +def: "A tooth that is attached to a palatine bone." [https://orcid.org/0000-0002-6601-2165] +synonym: "palatine teeth" EXACT PLURAL [] +synonym: "palatine tooth" EXACT [] +is_a: UBERON:0012070 ! palatal tooth +intersection_of: UBERON:0001091 ! calcareous tooth +intersection_of: attaches_to UBERON:0001682 ! palatine bone +relationship: attaches_to UBERON:0001682 ! palatine bone + +[Term] +id: UBERON:0012074 +name: bony part of hard palate +def: "A subdivision of skeletal system that subdivision_of a hard palate." [OBOL:automatic] +subset: pheno_slim +synonym: "bony palate" EXACT [FMA:59857] +synonym: "hard palate skeleton" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "palatum osseum" EXACT [FMA:TA] +xref: EMAPA:37444 {source="MA:th"} +xref: FMA:59857 +is_a: UBERON:0000075 ! subdivision of skeletal system +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0000075 ! subdivision of skeletal system +intersection_of: subdivision_of UBERON:0003216 ! hard palate +relationship: part_of UBERON:0003216 {source="FMA"} ! hard palate +relationship: part_of UBERON:0012072 ! palatal part of dermatocranium +relationship: subdivision_of UBERON:0003216 ! hard palate + +[Term] +id: UBERON:0012075 +name: replacement bone +def: "Bone that forms as a replacement of another structural tissue." [ZFA:0001628] +synonym: "replacement bones" EXACT PLURAL [ZFA:0001628] +xref: AAO:0010768 +xref: TAO:0001637 +xref: ZFA:0001628 +is_a: UBERON:0001474 {source="ZFA"} ! bone element +is_a: UBERON:0010522 {source="ZFA"} ! replacement element + +[Term] +id: UBERON:0012076 +name: tibiotalar joint +def: "A skeletal joint that connects a tibia and connects a talus." [OBOL:automatic] +synonym: "ankle joint" BROAD [http://en.wikipedia.org/wiki/Ankle] +synonym: "talotibial joint" NARROW [http://en.wikipedia.org/wiki/Ankle] +synonym: "tibioastragalar joint" NARROW [http://en.wikipedia.org/wiki/Ankle] +xref: http://www.snomedbrowser.com/Codes/Details/361864006 +is_a: UBERON:0011980 ! crurotarsal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0000979 ! tibia +intersection_of: connects UBERON:0002395 ! talus +relationship: connects UBERON:0000979 ! tibia +relationship: connects UBERON:0002395 ! talus + +[Term] +id: UBERON:0012078 +name: fovea capitis of femur +def: "The surface of the head of the femur is smooth, coated with cartilage in the fresh state, except over an ovoid depression, the fovea of head of femur, which is situated a little below and behind the center of the head, and gives attachment to the ligamentum teres." [http://en.wikipedia.org/wiki/Fovea_of_head_of_femur] +synonym: "fovea capitis" BROAD [http://en.wikipedia.org/wiki/Fovea_of_head_of_femur] +synonym: "fovea capitis femoris" EXACT LATIN [http://en.wikipedia.org/wiki/Fovea_of_head_of_femur] +synonym: "fovea capitis femoris (caput femoris)" EXACT [FMA:43700] +synonym: "fovea capitis of femoral head" EXACT [] +synonym: "fovea for ligament of head of femur" EXACT [FMA:43700] +synonym: "fovea of head of femur" RELATED [http://en.wikipedia.org/wiki/Fovea_of_head_of_femur] +xref: FMA:43700 +xref: http://en.wikipedia.org/wiki/Fovea_of_head_of_femur +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +relationship: part_of UBERON:0004412 ! proximal epiphysis of femur + +[Term] +id: UBERON:0012079 +name: metapterygial axis +def: "proximodistal trajectory through a metapterygium[Wagner]" [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/128] +comment: persisted in sacropterygians, precursor to limb axis +is_a: UBERON:0006800 ! anatomical line +relationship: part_of UBERON:0000026 ! appendage + +[Term] +id: UBERON:0012080 +name: patella cartilage element +def: "A cartilaginous condensation that has the potential to develop into a patella." [OBOL:automatic] +xref: EMAPA:19140 +is_a: UBERON:0003860 ! hindlimb mesenchyme +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005863 ! cartilaginous condensation +intersection_of: UBERON:0005863 ! cartilaginous condensation +intersection_of: has_potential_to_develop_into UBERON:0002446 ! patella +relationship: adjacent_to UBERON:0001485 ! knee joint +relationship: develops_from UBERON:0012081 ! patella pre-cartilage condensation +relationship: has_potential_to_develop_into UBERON:0002446 ! patella +relationship: part_of UBERON:0001441 ! hindlimb skeleton + +[Term] +id: UBERON:0012081 +name: patella pre-cartilage condensation +def: "A pre-cartilage condensation that has the potential to develop into a patella." [OBOL:automatic] +xref: EMAPA:18510 +is_a: UBERON:0003321 ! mesenchyme of knee +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005866 ! pre-cartilage condensation +intersection_of: UBERON:0005866 ! pre-cartilage condensation +intersection_of: has_potential_to_develop_into UBERON:0002446 ! patella +relationship: has_potential_to_develop_into UBERON:0002446 ! patella +relationship: part_of UBERON:0001441 ! hindlimb skeleton +relationship: part_of UBERON:0006256 {source="EMAPA"} ! knee joint primordium + +[Term] +id: UBERON:0012082 +name: bronchial lumen +def: "An anatomical cavity that is part of a bronchus." [OBOL:automatic] +synonym: "bronchial lumen" EXACT [FMA:62646] +synonym: "lumen of bronchus" EXACT [FMA:62646] +xref: FMA:62646 +xref: http://www.snomedbrowser.com/Codes/Details/199401001 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 {source="FMA"} ! anatomical space +intersection_of: luminal_space_of UBERON:0002185 {source="FMA"} ! bronchus +relationship: luminal_space_of UBERON:0002185 ! bronchus +relationship: part_of UBERON:0002185 {source="FMA"} ! bronchus + +[Term] +id: UBERON:0012083 +name: lumen of primary bronchus +def: "An anatomical cavity that is part of a main bronchus." [OBOL:automatic] +synonym: "lumen of main bronchus" EXACT [FMA:13116] +synonym: "main bronchial lumen" EXACT [FMA:13116] +synonym: "principal bronchial lumen" EXACT [] +xref: FMA:13116 +is_a: UBERON:0012082 ! bronchial lumen +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0002182 ! main bronchus +relationship: luminal_space_of UBERON:0002182 ! main bronchus +relationship: part_of UBERON:0002182 ! main bronchus + +[Term] +id: UBERON:0012084 +name: lumen of secondary bronchus +def: "An anatomical cavity that is part of a lobar bronchus." [OBOL:automatic] +synonym: "lobar bronchial lumen" EXACT [FMA:62520] +synonym: "lumen of lobar bronchus" EXACT [FMA:62520] +synonym: "secondary bronchial lumen" EXACT [] +xref: FMA:62520 +is_a: UBERON:0012082 ! bronchial lumen +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0002183 ! lobar bronchus +relationship: luminal_space_of UBERON:0002183 ! lobar bronchus +relationship: part_of UBERON:0002183 ! lobar bronchus + +[Term] +id: UBERON:0012085 +name: lumen of tertiary bronchus +def: "An anatomical cavity that is part of a segmental bronchus." [OBOL:automatic] +synonym: "lumen of segmental bronchus" EXACT [FMA:62593] +synonym: "segmental bronchial lumen" EXACT [FMA:62593] +xref: FMA:62593 +is_a: UBERON:0012082 ! bronchial lumen +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0002184 ! segmental bronchus +relationship: luminal_space_of UBERON:0002184 ! segmental bronchus +relationship: part_of UBERON:0002184 ! segmental bronchus + +[Term] +id: UBERON:0012086 +name: lumen of parabronchus +def: "An anatomical cavity that is part of a parabronchus." [OBOL:automatic] +is_a: UBERON:0012085 ! lumen of tertiary bronchus +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0008961 ! parabronchus +relationship: luminal_space_of UBERON:0008961 ! parabronchus +relationship: part_of UBERON:0008961 ! parabronchus + +[Term] +id: UBERON:0012087 +name: air capillary of parabronchus +def: "An extension of the parabronchus, the walls of which are the site of gas exchange" [http://www.vetmed.vt.edu/education/Curriculum/VM8054/Labs/Lab26/Examples/exairves.htm, ISBN:0073040584] +synonym: "air capillary" EXACT [] +synonym: "air vesicle" EXACT [] +is_a: UBERON:0010000 ! multicellular anatomical structure +relationship: connected_to UBERON:0008961 ! parabronchus +relationship: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0012088 +name: lateroobronchus +is_a: UBERON:0002185 ! bronchus +relationship: connected_to UBERON:0009066 ! posterior thoracic air sac + +[Term] +id: UBERON:0012100 +name: appendicocostalis muscle +def: "One of of three muscles associated with the uncinate processes." [http://www.ncbi.nlm.nih.gov/pubmed/15755883] +synonym: "appendicocostalis" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/15755883] +is_a: UBERON:0003831 ! respiratory system muscle + +[Term] +id: UBERON:0012101 +name: perinatal stage +def: "The period spanning the range immediately before and after birth" [http://orcid.org/0000-0002-6601-2165] +synonym: "paranatal stage" NARROW [] +is_a: UBERON:0000105 ! life cycle stage + +[Term] +id: UBERON:0012102 +name: buccal salivary gland +def: "A salivary gland that is part of a cheek." [OBOL:automatic] +xref: FMA:59793 +xref: NCIT:C32237 +is_a: UBERON:0001044 ! saliva-secreting gland +intersection_of: UBERON:0001044 ! saliva-secreting gland +intersection_of: part_of UBERON:0001567 ! cheek +relationship: part_of UBERON:0001567 ! cheek + +[Term] +id: UBERON:0012103 +name: suspensory ligament of breast +def: "Cooper's ligaments (also known as the suspensory ligaments of Cooper and the fibrocollagenous septa) are connective tissue in the breast that helps maintain structural integrity. Transmission diffraction tomography can reveal the anatomy. Cooper's Suspensory Ligament should not be confused with the pectineal ligament (sometimes called the inguinal ligament of Cooper) which shares the same eponym." [http://en.wikipedia.org/wiki/Cooper%27s_ligaments] +comment: Connects skin of mammary gland with deep fascia +synonym: "Cooper's ligament" RELATED [http://en.wikipedia.org/wiki/Cooper%27s_ligaments] +synonym: "ligament of Cooper" RELATED [http://en.wikipedia.org/wiki/Cooper%27s_ligaments] +synonym: "retinaculum cutis mammae" EXACT [FMA:TA] +synonym: "suspensory ligament of cooper" EXACT [FMA:58040] +synonym: "suspensory ligament of the breast" RELATED [http://en.wikipedia.org/wiki/Cooper%27s_ligaments] +synonym: "suspensory ligaments of breast" RELATED [http://en.wikipedia.org/wiki/Cooper%27s_ligaments] +synonym: "suspensory ligaments of the breast" RELATED [http://en.wikipedia.org/wiki/Cooper%27s_ligaments] +synonym: "suspensory retinaculum of breast" EXACT [FMA:58040] +xref: Cooper%27s:ligaments +xref: FMA:58040 +xref: http://www.snomedbrowser.com/Codes/Details/279011006 +is_a: UBERON:0000158 {source="FMA"} ! membranous layer +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0013754 ! integumentary system layer +relationship: part_of UBERON:0005200 ! thoracic mammary gland + +[Term] +id: UBERON:0012104 +name: sesamoid bone of the peroneus longus muscle +comment: a coffee bean-shaped constant, large and regular bone. The lateral surface of the bone is convex in all directions and non-articular. The medial surface is covered with hyaline cartilage and articulates by means of a synovial joint with the corresponding facet of the cuboid bone. The histological structure and the mode of ossification of the os peroneum are identical to that of other short bones of the skeleton. +synonym: "os peroneum" EXACT [PMCID:PMC1261702] +is_a: UBERON:0001479 ! sesamoid bone +is_a: UBERON:0004251 ! hindlimb zeugopod bone +is_a: UBERON:0011141 ! appendicular ossicle +intersection_of: UBERON:0001479 ! sesamoid bone +intersection_of: located_in UBERON:0001387 ! fibularis longus +relationship: connected_to UBERON:0001455 ! cuboid bone +relationship: located_in UBERON:0001387 ! fibularis longus + +[Term] +id: UBERON:0012105 +name: baleen plate +def: "A keratinous sieve composed of bristles that enables filter feeding in the mouth of mysticete whales." [http://en.wikipedia.org/wiki/baleen] +xref: http://en.wikipedia.org/wiki/baleen +is_a: UBERON:0013765 ! digestive system element +relationship: composed_primarily_of UBERON:0012106 ! baleen plate bristle +relationship: part_of UBERON:0000165 ! mouth +relationship: part_of UBERON:0016618 ! baleen feeding system + +[Term] +id: UBERON:0012106 +name: baleen plate bristle +def: "A keratinous bristle that enables filter feeding in the mouth of mysticete whales." [http://en.wikipedia.org/wiki/baleen] +synonym: "baleen plate fringe" EXACT [] +synonym: "fringe of baleen plate" EXACT [] +xref: http://en.wikipedia.org/wiki/baleen +is_a: UBERON:0000061 ! anatomical structure +relationship: part_of UBERON:0012105 ! baleen plate + +[Term] +id: UBERON:0012108 +name: postorbital bar +def: "A strut formed from the union of the zygomatic process of the frontal bone with the frontal process of the zygomatic bone." [http://en.wikipedia.org/wiki/Postorbital_Bar, MURDOCH:1580] +synonym: "post-orbital bar" EXACT [] +xref: Postorbital:Bar +is_a: UBERON:0005913 ! zone of bone organ +relationship: has_fused_element UBERON:0012109 ! zygomatic process of frontal bone +relationship: has_fused_element UBERON:0012110 ! frontal process of zygomatic bone +relationship: part_of UBERON:0003113 {notes="orbital series"} ! dermatocranium + +[Term] +id: UBERON:0012109 +name: zygomatic process of frontal bone +def: "The part of the zygomatic process consisting of the frontal bone[WP]" [http://en.wikipedia.org/wiki/Zygomatic_process_of_frontal_bone] +synonym: "frontal bone - zygomatic process" EXACT [] +synonym: "processus zygomaticus (os frontale)" EXACT [FMA:54389] +synonym: "processus zygomaticus ossis frontalis" EXACT LATIN [http://en.wikipedia.org/wiki/Zygomatic_process_of_frontal_bone] +xref: FMA:54389 +xref: http://en.wikipedia.org/wiki/Zygomatic_process_of_frontal_bone +xref: http://www.snomedbrowser.com/Codes/Details/427577001 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +disjoint_from: UBERON:0012110 ! frontal process of zygomatic bone +relationship: connected_to UBERON:0001683 ! jugal bone +relationship: part_of UBERON:0000209 ! tetrapod frontal bone + +[Term] +id: UBERON:0012110 +name: frontal process of zygomatic bone +synonym: "processus frontalis (os zygomaticum)" EXACT [FMA:52907] +synonym: "processus frontalis ossis zygomatici" EXACT LATIN [FMA:52907, FMA:TA] +synonym: "zygomatic bone - frontal process" EXACT [] +xref: FMA:52907 +xref: http://www.snomedbrowser.com/Codes/Details/116353002 +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: connected_to UBERON:0000209 ! tetrapod frontal bone +relationship: part_of UBERON:0001683 ! jugal bone + +[Term] +id: UBERON:0012111 +name: diastema +alt_id: UBERON:0013134 +def: "A space or gap between two consecutive teeth." [http://en.wikipedia.org/wiki/Diastema_(dentistry), UBERON:cjm] +synonym: "diastemata" RELATED PLURAL [] +synonym: "interdental space" EXACT [] +xref: Diastema:(dentistry) +xref: FMA:77271 +xref: http://www.snomedbrowser.com/Codes/Details/410003009 +xref: MESH:A14.254.333 +is_a: UBERON:0000464 ! anatomical space +relationship: adjacent_to UBERON:0001091 ! calcareous tooth +relationship: adjacent_to UBERON:0001091 {minCardinality="2", maxCardinality="2"} ! calcareous tooth +relationship: part_of UBERON:0001708 ! jaw skeleton +relationship: part_of UBERON:0003672 ! dentition + +[Term] +id: UBERON:0012112 +name: ingested food +def: "A substance that is consumed by the organism for food." [http://orcid.org/0000-0002-6601-2165] +xref: FMA:62964 +is_a: UBERON:0000463 {source="FMA"} ! organism substance +relationship: located_in UBERON:0004908 ! upper digestive tract + +[Term] +id: UBERON:0012113 +name: bolus of food +def: "Ingested food has been chewed at the point of swallowing." [http://en.wikipedia.org/wiki/Bolus_(digestion)] +synonym: "bolus" BROAD [] +synonym: "bolus of ingested food" EXACT [FMA:78441] +synonym: "food bolus" EXACT [FMA:78441] +xref: Bolus:(digestion) +xref: FMA:78441 +is_a: UBERON:0012112 ! ingested food +relationship: located_in UBERON:0001043 ! esophagus + +[Term] +id: UBERON:0012114 +name: cud +def: "A bolus of semi-degraded food regurgitated from the reticulorumen of a ruminant, produced during the physical digestive process of rumination" [http://en.wikipedia.org/wiki/Cud] +synonym: "bolus of cud" RELATED [] +xref: http://en.wikipedia.org/wiki/Cud +xref: http://www.snomedbrowser.com/Codes/Details/110606000 +is_a: UBERON:0036017 ! regurgitated substance +relationship: has_part UBERON:0012113 ! bolus of food + +[Term] +id: UBERON:0012115 +name: dental comb +def: "A dental structure found in some mammals, comprising a group of front teeth arranged in a manner that facilitates grooming." [http://en.wikipedia.org/wiki/Toothcomb] +synonym: "tooth comb" EXACT [http://en.wikipedia.org/wiki/Toothcomb] +synonym: "toothcomb" EXACT [http://en.wikipedia.org/wiki/Toothcomb] +xref: http://en.wikipedia.org/wiki/Toothcomb +is_a: UBERON:0009678 ! tooth row + +[Term] +id: UBERON:0012116 +name: nutrient foramen conduit +def: "Any of the passages admitting nutrient vessels to the medullary cavity of bone" [http://medical-dictionary.thefreedictionary.com/nutrient+foramen] +is_a: UBERON:0005744 ! bone foramen +relationship: conduit_for UBERON:0010175 ! nutrient foramen vein +relationship: conduit_for UBERON:0010176 ! nutrient foramen artery +relationship: connected_to UBERON:0002371 ! bone marrow + +[Term] +id: UBERON:0012117 +name: lumen of nutrient foramen +def: "An anatomical space that is part of a nutrient foramen conduit, leading to the medullary cavity of the bone." [https://orcid.org/0000-0002-6601-2165] +synonym: "nutrient foramen" EXACT [FMA:75304] +synonym: "nutrient foramina" EXACT PLURAL [] +xref: FMA:75304 +xref: http://www.snomedbrowser.com/Codes/Details/29288001 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0012116 ! nutrient foramen conduit +relationship: connected_to UBERON:0002484 ! bone marrow cavity +relationship: luminal_space_of UBERON:0012116 ! nutrient foramen conduit +relationship: part_of UBERON:0012116 ! nutrient foramen conduit + +[Term] +id: UBERON:0012118 +name: infraspinatus tendon +def: "The infraspinatus muscle inserts at this tendon to the distal greater tubercle of the humerus. This tendon stretches across the shoulder joint to attach to the humerus and in doing so acts as a very strong ligament to hold the joint surface in apposition. This structure restricts the movement of the shoulder joint to flexion and extension (together with the suscapularis tendon and the supraspinatus tendon). A bursa lies under this tendon at the greater tubercle of the humerus. The bursa is lined by a synovial membrance and filled with synovial fluid and protects the infraspinatus tendon and the shoulder joint by allowing the transmissions of tension and sheer forces around an angle." [MURDOCH:963] +synonym: "tendon of infraspinatus muscle" EXACT [FMA:37076] +xref: FMA:37076 +is_a: UBERON:0000043 ! tendon +is_a: UBERON:0003579 ! shoulder connective tissue +intersection_of: UBERON:0000043 ! tendon +intersection_of: part_of UBERON:0001477 ! infraspinatus muscle +relationship: connects UBERON:0001477 ! infraspinatus muscle +relationship: connects UBERON:0011187 ! ventral tubercle of humerus +relationship: part_of UBERON:0001477 ! infraspinatus muscle + +[Term] +id: UBERON:0012119 +name: vinculum tendon of wing +def: "A tendon which emerges from the distal end of the humerus and follows the posterior margin of the wing, attaching at the distal end of digit 2. The raches of the remiges (i.e., the stems of the flight feathers) are stabilized by passing through the vinculum." [http://palaeos.com/vertebrates/glossary/glossaryUV.html] +is_a: UBERON:0000043 ! tendon +is_a: UBERON:0003588 ! forelimb connective tissue +relationship: connected_to UBERON:0003622 ! manual digit 2 +relationship: connected_to UBERON:0004404 ! distal epiphysis of humerus +relationship: part_of UBERON:0000024 ! forelimb wing + +[Term] +id: UBERON:0012120 +name: vinculum of tendon +def: "A tendinous band that connects the phalanges and the flexor muscles of the autopods." [http://en.wikipedia.org/wiki/Vincula_tendina, http://orcid.org/0000-0002-6601-2165] +synonym: "tendon vinculum" EXACT [FMA:42604] +xref: FMA:42604 +xref: http://www.snomedbrowser.com/Codes/Details/360764006 +xref: Vincula:tendina +is_a: UBERON:0000043 ! tendon + +[Term] +id: UBERON:0012121 +name: respiratory velum +def: "A respiratory pump found in basal craniates" [http://en.wikipedia.org/wiki/http\://palaeos.com/vertebrates/glossary/glossaryUV.html] +synonym: "velum" BROAD [] +is_a: UBERON:0000171 ! respiration organ +disjoint_from: UBERON:0035960 ! velum feeding organ +relationship: present_in_taxon NCBITaxon:7762 + +[Term] +id: UBERON:0012124 +name: avian scapholunar bone +comment: May correspond to radiale[Origin and evolution of birds, Feduccia] +synonym: "radiale" RELATED [] +synonym: "scapholunar" RELATED [] +is_a: UBERON:0001480 ! proximal carpal bone + +[Term] +id: UBERON:0012125 +name: dermatological-muscosal system +def: "Anatomical system that consists of the integumental system plus all mucosae and submucosae." [https://github.com/obophenotype/uberon/issues/53] +synonym: "dermatological system" RELATED [OBI:MC] +is_a: UBERON:0000467 ! anatomical system +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mcourtot +relationship: existence_ends_during UBERON:0000066 ! fully formed stage +relationship: has_part UBERON:0000009 ! submucosa +relationship: has_part UBERON:0000344 ! mucosa +relationship: has_part UBERON:0002072 ! hypodermis +relationship: has_part UBERON:0002097 ! skin of body + +[Term] +id: UBERON:0012126 +name: fibulare +def: "One of two elements that constitute the basal row of tarsals. The fibulare constitutes the preaxial element[AAO]." [AAO:0000913] +synonym: "astragalus" RELATED [AAO:0000913] +xref: AAO:0000913 +is_a: UBERON:0011679 ! proximal tarsal bone +relationship: preaxialmost_part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0012127 +name: feather barbicel +def: "A minute hook that projects off of a feather barbule, holding barbules together" [http://orcid.org/0000-0002-6601-2165] +synonym: "barbicel" BROAD SENSU [] +synonym: "feather hooklet" EXACT [] +synonym: "hooklet" BROAD SENSU [] +xref: BTO:0003269 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0013703 ! integumentary projection +relationship: branching_part_of UBERON:0008295 ! feather barbule +relationship: part_of UBERON:0008295 ! feather barbule + +[Term] +id: UBERON:0012128 +name: nose tip +def: "Outermost point on an external nose or snout" [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/109] +subset: pheno_slim +synonym: "apex nasi" EXACT LATIN [FMA:TA] +synonym: "apex of nose" EXACT [FMA:59518] +synonym: "nasal tip" EXACT [FMA:59518] +synonym: "pirula" RELATED [https://www.abdn.ac.uk/bestiary/translat/84v.hti] +synonym: "snout tip" RELATED [] +synonym: "tip of nose" EXACT [FMA:59518] +synonym: "tip of snout" RELATED [] +xref: EMAPA:37915 {source="MA:th"} +xref: FMA:59518 +xref: http://www.snomedbrowser.com/Codes/Details/361926005 +is_a: UBERON:0006983 ! anatomical point +property_value: dc-contributor https://github.com/cmungall +relationship: part_of UBERON:0007827 {source="FMA"} ! external nose + +[Term] +id: UBERON:0012129 +name: radial head of humerus +def: "Hemispherical ball located at the lower end of the humerus that stands out prominently from the surrounding structures toward the flexor surface of the forelimb" [AAO:LAP, PHENOSCAPE:curators] +synonym: "capitellum" RELATED [] +synonym: "capitellum of humerus" EXACT [] +synonym: "eminentia capitata" RELATED [AAO:0000838] +synonym: "radial condyle" RELATED [AAO:0000838] +synonym: "radial condyle of humerus" EXACT [] +xref: AAO:0000838 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +relationship: part_of UBERON:0004404 ! distal epiphysis of humerus + +[Term] +id: UBERON:0012130 +name: olecranon fossa +def: "A deep evacuation in the bone, into which the anconeal process of the ulna passes when the elbow joint is extended." [MURDOCH:894] +synonym: "fossa olecrani" EXACT LATIN [http://en.wikipedia.org/wiki/Olecranon_fossa] +xref: FMA:23450 +xref: Olecranon:fossa +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +relationship: part_of UBERON:0004404 ! distal epiphysis of humerus + +[Term] +id: UBERON:0012131 +name: centrale +def: "Endochondral bone located between the proximal and distal rows of carpals or tarsals and thus representing the central carpals or tarsals[PHENOSCAPE]." [https://github.com/obophenotype/uberon/issues/124, PHENOSCAPE:AMAO] +synonym: "central mesopodium bone" EXACT [] +synonym: "centralia" RELATED PLURAL [] +synonym: "os centrale" EXACT [FMA:77232] +xref: EMAPA:36170 +xref: FMA:77232 +is_a: UBERON:0003656 ! mesopodium bone +is_a: UBERON:0015067 ! centrale endochondral element +intersection_of: UBERON:0015067 ! centrale endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +property_value: dc-contributor https://github.com/alex-dececchi +property_value: dc-contributor https://github.com/cmungall +relationship: develops_from UBERON:0015077 ! centrale cartilage + +[Term] +id: UBERON:0012132 +name: intercuneiform joint +def: "The intercuneiform articulations are articulations among the cuneiform bones[WP,unverified]." [http://en.wikipedia.org/wiki/Intercuneiform_articulations] +synonym: "cuneocuboid" RELATED [http://en.wikipedia.org/wiki/Intercuneiform_articulations] +synonym: "cuneocuboid articulation" RELATED [http://en.wikipedia.org/wiki/Intercuneiform_articulations] +synonym: "intercuneiform" RELATED [http://en.wikipedia.org/wiki/Intercuneiform_articulations] +synonym: "intercuneiform and cuneocuboid articulations" RELATED [http://en.wikipedia.org/wiki/Intercuneiform_articulations] +synonym: "intercuneiform articulation" RELATED [http://en.wikipedia.org/wiki/Intercuneiform_articulations] +synonym: "intercuneiform joints" RELATED [http://en.wikipedia.org/wiki/Intercuneiform_articulations] +xref: FMA:35213 +xref: Intercuneiform:articulations +is_a: UBERON:0000982 ! skeletal joint +relationship: connects UBERON:0010721 {minCardinality="2", maxCardinality="2"} ! distal tarsal bone +relationship: connects UBERON:0010721 ! distal tarsal bone + +[Term] +id: UBERON:0012133 +name: lateral-intermediate intercuneiform joint +xref: FMA:73223 +is_a: UBERON:0012132 ! intercuneiform joint +disjoint_from: UBERON:0012134 {source="lexical"} ! medial-intermediate intercuneiform joint + +[Term] +id: UBERON:0012134 +name: medial-intermediate intercuneiform joint +xref: FMA:73222 +is_a: UBERON:0012132 ! intercuneiform joint + +[Term] +id: UBERON:0012135 +name: prepollex skeleton +comment: A prepollex does not contain phalanges nor does it articulate with a metacarpal. It articulates with elements of the carpal (wrist) skeleton[AAO:DB]. editor note: TODO add articulation relations +synonym: "cartilago pre-pollicis" RELATED [AAO:0000852] +synonym: "prepollex" BROAD [AAO:0000852] +xref: AAO:0000852 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010712 ! limb skeleton subdivision +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0005880 ! prepollex +relationship: part_of UBERON:0005880 ! prepollex +relationship: part_of UBERON:0009880 {source="AAO"} ! carpal skeleton +relationship: preaxialmost_part_of UBERON:0009880 ! carpal skeleton +relationship: skeleton_of UBERON:0005880 ! prepollex + +[Term] +id: UBERON:0012136 +name: prehallux +is_a: UBERON:0005881 ! autopodial extension +intersection_of: UBERON:0005881 ! autopodial extension +intersection_of: has_skeleton UBERON:3000922 ! prehallux skeleton +relationship: has_skeleton UBERON:3000922 ! prehallux skeleton +relationship: part_of UBERON:0004454 ! tarsal region + +[Term] +id: UBERON:0012137 +name: pedal digit 7 +synonym: "foot digit 7" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind digit 7" EXACT [] +synonym: "hind digit VII" EXACT [] +synonym: "hind limb digit 7" EXACT [OBOL:accepted] +synonym: "pedal digit VII" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "pes digit VII" EXACT [] +synonym: "seventh toe" EXACT [] +synonym: "toe 7" EXACT [] +is_a: UBERON:0001466 ! pedal digit +intersection_of: UBERON:0001466 ! pedal digit +intersection_of: part_of UBERON:5012137 ! pedal digit 7 plus metapodial segment +relationship: part_of UBERON:5012137 ! pedal digit 7 plus metapodial segment + +[Term] +id: UBERON:0012138 +name: pedal digit 8 +synonym: "digitus octus pedis" EXACT LATIN [] +synonym: "eigth toe" EXACT [] +synonym: "foot digit 8" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind digit 8" EXACT [] +synonym: "hind digit VIII" EXACT [] +synonym: "hind limb digit 8" EXACT [OBOL:accepted] +synonym: "pedal digit VIII" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "pes digit VIII" EXACT [] +synonym: "toe 8" EXACT [] +is_a: UBERON:0001466 ! pedal digit +intersection_of: UBERON:0001466 ! pedal digit +intersection_of: part_of UBERON:5012138 ! pedal digit 8 plus metapodial segment +relationship: part_of UBERON:5012138 ! pedal digit 8 plus metapodial segment + +[Term] +id: UBERON:0012139 +name: segment of autopod +is_a: UBERON:0002529 {notes="may be revised"} ! limb segment +relationship: part_of UBERON:0002470 ! autopod region + +[Term] +id: UBERON:0012140 +name: digitopodium region +def: "A segment of the autopod consisting of both acropodial region and metapodial region, but excluding the mesopodial/basopodial region." [https://github.com/obophenotype/uberon/issues/131, PHENOSCAPE:ni] +synonym: "acropodium (Wagner)" RELATED [] +is_a: UBERON:0012139 ! segment of autopod +intersection_of: UBERON:0012139 ! segment of autopod +intersection_of: has_skeleton UBERON:0012150 ! skeleton of digitopodium +relationship: adjacent_to UBERON:0006716 ! mesopodium region +relationship: has_skeleton UBERON:0012150 ! skeleton of digitopodium + +[Term] +id: UBERON:0012141 +name: manual digitopodium region +def: "A digitopodium region that is part of a manus[Obol]. This includes the fingers and metacarpal region, but excludes the carpal region." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0005451 ! segment of manus +is_a: UBERON:0012140 ! digitopodium region +intersection_of: UBERON:0012140 ! digitopodium region +intersection_of: part_of UBERON:0002398 ! manus +relationship: has_skeleton UBERON:0012151 ! skeleton of manual digitopodium + +[Term] +id: UBERON:0012142 +name: pedal digitopodium region +def: "A digitopodium region that is part of a pes[Obol]. This includes the toes and metatarsal region, but excludes the tarsals region." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0005445 ! segment of pes +is_a: UBERON:0012140 ! digitopodium region +intersection_of: UBERON:0012140 ! digitopodium region +intersection_of: part_of UBERON:0002387 ! pes +relationship: has_skeleton UBERON:0012152 ! skeleton of pedal digitopodium + +[Term] +id: UBERON:0012150 +name: skeleton of digitopodium +def: "A subdivision of the autopod skeleton consisting of both acropodial skeleon and metapodial skeleton, but excluding the mesopodial/basopodial skeleton." [PHENOSCAPE:ni] +synonym: "digitopodium" RELATED [PHENOSCAPE:ni] +synonym: "skeleton of digits" RELATED COMPARATIVE_PREFERRED [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010712 ! limb skeleton subdivision +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0012140 ! digitopodium region +relationship: part_of UBERON:0006717 ! autopodial skeleton +relationship: part_of UBERON:0012140 ! digitopodium region +relationship: skeleton_of UBERON:0012140 ! digitopodium region + +[Term] +id: UBERON:0012151 +name: skeleton of manual digitopodium +def: "A subdivision of the manus skeleton consisting of both manual acropodial skeleton and metacarpal skeleton, but excluding the carpal skeleton." [https://orcid.org/0000-0002-6601-2165, PHENOSCAPE:ni] +synonym: "manual digitopodium" RELATED [] +is_a: UBERON:0012150 ! skeleton of digitopodium +intersection_of: UBERON:0012150 ! skeleton of digitopodium +intersection_of: part_of UBERON:0002398 ! manus +relationship: part_of UBERON:0001442 ! skeleton of manus +relationship: part_of UBERON:0012141 {source="FMA"} ! manual digitopodium region + +[Term] +id: UBERON:0012152 +name: skeleton of pedal digitopodium +def: "A subdivision of the pes skeleton consisting of both pedal acropodial skeleton and metatarsal skeleton, but excluding the tarsal skeleton." [https://orcid.org/0000-0002-6601-2165, PHENOSCAPE:ni] +synonym: "pedal digitopodium" RELATED [] +is_a: UBERON:0012150 ! skeleton of digitopodium +intersection_of: UBERON:0012150 ! skeleton of digitopodium +intersection_of: part_of UBERON:0002387 ! pes +relationship: part_of UBERON:0001445 ! skeleton of pes +relationship: part_of UBERON:0012142 ! pedal digitopodium region + +[Term] +id: UBERON:0012167 +name: buccal fat pad +def: "The Buccal fat pad is one of several encapsulated fat masses in the cheek. It is a deep fat pad located on either side of the face between the buccinator muscle and several more superficial muscles. It should not be confused with the malar fat pad, which is directly below the skin of the cheek. It should also not be confused with jowl fat pads. It is implicated in the formation of hollow cheeks and the nasolabial fold, but not in the formation of jowls." [http://en.wikipedia.org/wiki/Buccal_fat_pad] +synonym: "Bichat's fat pad" EXACT [FMA:59799] +synonym: "cheek fat pad" EXACT [] +xref: FMA:59799 +xref: http://en.wikipedia.org/wiki/Buccal_fat_pad +xref: http://www.snomedbrowser.com/Codes/Details/25930004 +is_a: UBERON:0003566 ! head connective tissue +is_a: UBERON:0003916 ! fat pad +intersection_of: UBERON:0003916 ! fat pad +intersection_of: part_of UBERON:0001567 ! cheek +relationship: part_of UBERON:0001567 ! cheek + +[Term] +id: UBERON:0012168 +name: umbilical cord blood +def: "blood that remains in the placenta and in the attached umbilical cord after childbirth[WP]." [http://en.wikipedia.org/wiki/Cord_blood] +comment: Cord blood is collected because it contains stem cells, which can be used to treat hematopoietic and genetic disorders.[WP] +subset: efo_slim +synonym: "cord blood" RELATED [BTO:0004053] +synonym: "fetal blood" RELATED [MESH:A12.207.152.200] +synonym: "umbilical cord blood" RELATED [MESH:A12.207.152.200] +xref: BTO:0004053 +xref: CALOHA:TS-1079 +xref: Cord:blood +xref: EFO:0001942 +xref: MESH:D005312 +is_a: UBERON:0000178 ! blood +intersection_of: UBERON:0000178 ! blood +intersection_of: located_in UBERON:0001310 ! umbilical artery +relationship: located_in UBERON:0001310 ! umbilical artery +relationship: part_of UBERON:0000323 ! late embryo + +[Term] +id: UBERON:0012170 +name: core of nucleus accumbens +subset: efo_slim +synonym: "accumbens nucleus core" RELATED [BAMS:AcbC] +synonym: "accumbens nucleus, core" RELATED [BAMS:AcbC] +synonym: "core of nucleus accumbens" EXACT [NLXANAT:20090306] +synonym: "core region of nucleus accumbens" EXACT [FMA:77383] +synonym: "nucleus accumbens core" EXACT [NLXANAT:20090306] +synonym: "nucleusa ccumbens core" RELATED [BAMS:ACBc] +xref: BAMS:ACBc +xref: BAMS:AcbC +xref: DHBA:10340 +xref: EFO:0002458 +xref: FMA:77383 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1840 +xref: NLXANAT:20090306 +xref: PBA:10093 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001882 {source="NIFSTD"} ! nucleus accumbens + +[Term] +id: UBERON:0012171 +name: shell of nucleus accumbens +def: "Crescent shaped outer zone of the nucleus accumbens, defined by a combination of chemoarchitecture and afferent and efferent connections. The shell is distinguished from the more centrally located core through the notable reduction in staining for the calcium-binding protein calbindin D28K, which is dense in the core and virtually absent in the shell." [NLXANAT:20090307] +subset: efo_slim +synonym: "accumbens nucleus shell" RELATED [BAMS:AcbSh] +synonym: "accumbens nucleus, shell" RELATED [BAMS:AcbSh] +synonym: "nucleus accumbens shell" EXACT [NLXANAT:20090307] +synonym: "shell of nucleus accumbens" EXACT [NLXANAT:20090307] +synonym: "shell region of nucleus accumbens" EXACT [FMA:77387] +xref: BAMS:ACBs +xref: BAMS:AcbSh +xref: DHBA:10341 +xref: EFO:0002459 +xref: FMA:77387 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1163 +xref: NLXANAT:20090307 +xref: PBA:10094 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001882 {source="NIFSTD"} ! nucleus accumbens + +[Term] +id: UBERON:0012172 +name: stomach primordium +def: "A primordium that has the potential to develop into a stomach." [OBOL:automatic] +subset: efo_slim +synonym: "stomach endoderm" RELATED [EFO:0002580] +xref: EFO:0002580 +xref: http://linkedlifedata.com/resource/umls/id/C1514976 +xref: NCIT:C34305 +xref: UMLS:C1514976 {source="ncithesaurus:Stomach_Primordium"} +is_a: UBERON:0001048 ! primordium +intersection_of: UBERON:0001048 ! primordium +intersection_of: has_potential_to_develop_into UBERON:0000945 ! stomach +relationship: has_potential_to_develop_into UBERON:0000945 ! stomach +relationship: part_of UBERON:0003258 ! endoderm of foregut + +[Term] +id: UBERON:0012173 +name: middle suprarenal artery +def: "The middle suprarenal arteries (middle capsular arteries; suprarenal arteries) are two small vessels which arise, one from either side of the abdominal aorta, opposite the superior mesenteric artery. They pass laterally and slightly upward, over the crura of the diaphragm, to the suprarenal glands, where they anastomose with suprarenal branches of the inferior phrenic and renal arteries. In the fetus these arteries are of large size." [http://en.wikipedia.org/wiki/Middle_suprarenal_arteries] +synonym: "arteria suprarenalis media" RELATED LATIN [http://en.wikipedia.org/wiki/Middle_suprarenal_arteries] +synonym: "middle capsular artery" RELATED [http://en.wikipedia.org/wiki/Middle_suprarenal_arteries] +synonym: "middle suprarenal" RELATED [http://en.wikipedia.org/wiki/Middle_suprarenal_arteries] +synonym: "middle suprarenal arterial tree" EXACT [FMA:14754] +synonym: "middle suprarenal artery" RELATED [http://en.wikipedia.org/wiki/Middle_suprarenal_arteries] +xref: FMA:14754 +xref: http://en.wikipedia.org/wiki/Middle_suprarenal_arteries +xref: http://www.snomedbrowser.com/Codes/Details/303425000 +is_a: UBERON:0005624 ! suprarenal artery +is_a: UBERON:0012254 ! abdominal aorta artery + +[Term] +id: UBERON:0012174 +name: obsolete geniculate nucleus +comment: inappropriate grouping +synonym: "geniculate body" EXACT [] +xref: EFO:0002463 +xref: http://www.snomedbrowser.com/Codes/Details/362376002 +is_obsolete: true +consider: UBERON:0001926 +consider: UBERON:0001927 + +[Term] +id: UBERON:0012175 +name: acoustico-facial VII-VIII ganglion complex +synonym: "acousticofacial ganglion" EXACT [] +synonym: "facio-acoustic ganglion" EXACT [] +synonym: "facio-acoustic ganglion complex" RELATED [EMAPA:16794] +synonym: "facio-acoustic ganglion complex VII-VIII" EXACT [EMAPA:16794] +synonym: "facio-acoustic VII-VIII ganglion complex" RELATED [VHOG:0000715] +xref: EHDAA2:0000494 +xref: EMAPA:16794 +xref: http://www.snomedbrowser.com/Codes/Details/361514006 +xref: VHOG:0000715 +is_a: UBERON:0001714 {source="cjm"} ! cranial ganglion +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: develops_from UBERON:0003051 {source="EHDAA2"} ! ear vesicle +relationship: develops_from UBERON:0006232 {source="cjm"} ! facio-acoustic VII-VIII preganglion complex + +[Term] +id: UBERON:0012176 +name: comb +def: "A vascular, red cutaneous structure attached in a sagittal plane to the dorsum of the skull of domestic fowl. It consists of a base attached to the skull, a central mass called the body, a backward projecting blade and upward projecting points" [http://medical-dictionary.thefreedictionary.com/pea+comb] +xref: http://www.snomedbrowser.com/Codes/Details/3643003 +is_a: UBERON:0000021 ! cutaneous appendage + +[Term] +id: UBERON:0012177 +name: skin apocrine gland +def: "An apocrine gland that is part of a skin of body." [OBOL:automatic] +xref: MA:0000147 +is_a: UBERON:0002419 {source="MA"} ! skin gland +is_a: UBERON:0008974 ! apocrine gland +is_a: UBERON:0019319 ! exocrine gland of integumental system +intersection_of: UBERON:0008974 ! apocrine gland +intersection_of: part_of UBERON:0002097 ! skin of body + +[Term] +id: UBERON:0012179 +name: bone of pelvis +xref: EMAPA:37249 {source="MA:th"} +xref: MA:0000532 +is_a: UBERON:0003828 {source="MA"} ! abdominal segment bone +is_a: UBERON:0005179 ! pelvic region element + +[Term] +id: UBERON:0012180 +name: head or neck skin +def: "A zone of skin that is part of a craniocervical region." [OBOL:automatic] +xref: EMAPA:37276 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1522650 +xref: MA:0000574 +xref: NCIT:C12294 +xref: UMLS:C1522650 {source="ncithesaurus:Skin_of_the_Scalp_and_Neck"} +is_a: UBERON:0000014 ! zone of skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0007811 ! craniocervical region +relationship: part_of UBERON:0007811 ! craniocervical region + +[Term] +id: UBERON:0012181 +name: tonsil crypt +def: "Tonsils consist of an extensive system of crypts, which result in a large internal surface. The tonsils contain four lymphoid compartments that influence immune functions, namely the reticular crypt epithelium, the extrafollicular area, the mantle zones of lymphoid follicles, and the follicular germinal centers. In human palatine tonsils, the very first part exposed to the outside environment is tonsillar epithelium." [http://en.wikipedia.org/wiki/Tonsillar_crypts] +synonym: "cryptae tonsillares" EXACT LATIN [http://en.wikipedia.org/wiki/Tonsillar_crypts] +synonym: "tonsillar crypt" EXACT [FMA:55044] +xref: FMA:55044 +xref: http://linkedlifedata.com/resource/umls/id/C0229876 +xref: http://www.snomedbrowser.com/Codes/Details/143723007 +xref: MA:0000777 +xref: NCIT:C33791 +xref: Tonsillar:crypts +xref: UMLS:C0229876 {source="ncithesaurus:Tonsillar_Crypt"} +is_a: UBERON:0013696 ! tonsil epithelium + +[Term] +id: UBERON:0012184 +name: obsolete tunica vasculosa plexus +def: "." [https://sourceforge.net/tracker/?func=detail&aid=3580301&group_id=76834&atid=1205376] +comment: obsolete term deriving from MA to NCITA mappings. +is_obsolete: true +consider: MA:0001284 +consider: NCIT:C33823 + +[Term] +id: UBERON:0012186 +name: ovary growing follicle +def: "An ovarian follicle undergoing maturation." [ncithesaurus:Growing_Follicle] +xref: EMAPA:35628 +xref: http://linkedlifedata.com/resource/umls/id/C1512279 +xref: MA:0001708 +xref: NCIT:C32702 +xref: UMLS:C1512279 {source="ncithesaurus:Growing_Follicle"} +is_a: UBERON:0001305 {source="MA"} ! ovarian follicle + +[Term] +id: UBERON:0012187 +name: frontal artery +def: "The supratrochlear artery (or frontal artery), one of the terminal branches of the ophthalmic artery, branches off where the ophthalmic travels posterior to the trochlea." [http://en.wikipedia.org/wiki/Supratrochlear_artery] +synonym: "a supratrochlearis" RELATED [http://en.wikipedia.org/wiki/Supratrochlear_artery] +synonym: "frontal arteries" RELATED [http://en.wikipedia.org/wiki/Supratrochlear_artery] +synonym: "frontal artery" RELATED [http://en.wikipedia.org/wiki/Supratrochlear_artery] +synonym: "supratrochlear artery" EXACT [FMA:50025] +synonym: "supratrochlear branch of ophthalmic artery" EXACT [FMA:50025] +xref: EMAPA:37590 {source="MA:th"} +xref: FMA:50025 +xref: http://linkedlifedata.com/resource/umls/id/C1708100 +xref: http://www.snomedbrowser.com/Codes/Details/369332005 +xref: MA:0001960 +xref: NCIT:C52856 +xref: Supratrochlear:artery +xref: UMLS:C1708100 {source="ncithesaurus:Frontal_Artery"} +is_a: UBERON:0015156 {source="FMA"} ! terminal branch of ophthalmic artery + +[Term] +id: UBERON:0012193 +name: phrenic vein +def: "The veins that run parallel to the phrenic arteries which include the two superior and two inferior phrenic veins." [ncithesaurus:Phrenic_Vein] +xref: EMAPA:37180 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1709532 +xref: MA:0002194 +xref: NCIT:C53062 +xref: UMLS:C1709532 {source="ncithesaurus:Phrenic_Vein"} +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0001103 ! diaphragm +relationship: drains UBERON:0001103 ! diaphragm + +[Term] +id: UBERON:0012194 +name: superior intercostal vein +def: "The superior intercostal veins are two veins that drain the 2nd, 3rd, and 4th intercostal spaces, one vein for each side of the body." [http://en.wikipedia.org/wiki/Superior_intercostal_vein] +xref: EMAPA:37193 {source="MA:th"} +xref: http://en.wikipedia.org/wiki/Superior_intercostal_vein +xref: http://linkedlifedata.com/resource/umls/id/C1515066 +xref: MA:0002226 +xref: NCIT:C33680 +xref: UMLS:C1515066 {source="ncithesaurus:Superior_Intercostal_Vein"} +is_a: UBERON:0012197 ! intercostal vein + +[Term] +id: UBERON:0012195 +name: left superior intercostal vein +xref: FMA:4797 +xref: http://www.snomedbrowser.com/Codes/Details/27297006 +is_a: UBERON:0012194 ! superior intercostal vein + +[Term] +id: UBERON:0012196 +name: right superior intercostal vein +xref: FMA:4877 +xref: http://www.snomedbrowser.com/Codes/Details/80721005 +is_a: UBERON:0012194 ! superior intercostal vein + +[Term] +id: UBERON:0012197 +name: intercostal vein +def: "The intercostal veins are a group of veins which drain the area between the ribs." [http://en.wikipedia.org/wiki/Intercostal_veins] +xref: EMAPA:18762 +xref: http://www.snomedbrowser.com/Codes/Details/281057004 +xref: Intercostal:veins +xref: MA:0003166 +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: located_in UBERON:0012198 ! intercostal space +relationship: located_in UBERON:0012198 ! intercostal space + +[Term] +id: UBERON:0012198 +name: intercostal space +def: "A space in the rib cage between two successive ribs." [http://orcid.org/0000-0002-6601-2165] +xref: FMA:12243 +xref: http://www.snomedbrowser.com/Codes/Details/243937005 +xref: Intercostal:space +is_a: UBERON:0000464 ! anatomical space +relationship: adjacent_to UBERON:0002228 ! rib +relationship: part_of UBERON:0003252 ! thoracic rib cage + +[Term] +id: UBERON:0012199 +name: posterior intercostal vein +def: "The posterior intercostal veins are veins that drain the intercostal spaces posteriorly. They run with their corresponding posterior intercostal artery on the underside of the rib, the vein superior to the artery. Each vein also gives off a dorsal branch that drains blood from the muscles of the back. There are eleven posterior intercostal veins on each side. Their patterns are variable, but they are commonly arranged as: The 1st posterior intercostal vein, supreme intercostal vein, drains into the brachiocephalic vein or the vertebral vein. The 2nd and 3rd (and often 4th) posterior intercostal veins drain into the superior intercostal vein. The remaining posterior intercostal veins drain into the azygos vein on the right, or the hemiazygos vein on the left." [http://en.wikipedia.org/wiki/Posterior_intercostal_veins] +synonym: "venae intercostalis posterior" EXACT LATIN [FMA:4858] +xref: FMA:4858 +xref: http://en.wikipedia.org/wiki/Posterior_intercostal_veins +xref: http://www.snomedbrowser.com/Codes/Details/89209000 +is_a: UBERON:0012197 ! intercostal vein +disjoint_from: UBERON:0012200 {source="lexical"} ! anterior intercostal vein + +[Term] +id: UBERON:0012200 +name: anterior intercostal vein +def: "The anterior intercostal veins are the veins which drain the anterior intercostal space." [http://en.wikipedia.org/wiki/Anterior_intercostal_veins] +xref: FMA:12831 +xref: http://en.wikipedia.org/wiki/Anterior_intercostal_veins +xref: http://www.snomedbrowser.com/Codes/Details/15546000 +is_a: UBERON:0012197 ! intercostal vein + +[Term] +id: UBERON:0012236 +name: intercostal lymph node +def: "The intercostal lymph nodes (intercostal glands ) occupy the posterior parts of the intercostal spaces, in relation to the intercostal vessels. They receive the deep lymphatics from the postero-lateral aspect of the chest; some of these vessels are interrupted by small lateral intercostal glands." [http://en.wikipedia.org/wiki/Intercostal_lymph_nodes] +synonym: "intercostal node" EXACT [FMA:5932] +synonym: "nodi lymphoidei intercostales" EXACT [http://en.wikipedia.org/wiki/Intercostal_lymph_nodes] +synonym: "nodus intercostale" EXACT [FMA:5932] +xref: FMA:5932 +xref: http://en.wikipedia.org/wiki/Intercostal_lymph_nodes +xref: http://linkedlifedata.com/resource/umls/id/C0229761 +xref: http://www.snomedbrowser.com/Codes/Details/204088001 +xref: NCIT:C77652 +xref: UMLS:C0229761 {source="ncithesaurus:Intercostal_Lymph_Node"} +is_a: UBERON:0007644 {source="FMA"} ! thoracic lymph node +intersection_of: UBERON:0000029 ! lymph node +intersection_of: located_in UBERON:0012198 ! intercostal space +relationship: located_in UBERON:0012198 ! intercostal space + +[Term] +id: UBERON:0012237 +name: superior phrenic vein +def: "The superior phrenic vein, i.e. , the vein accompanying the pericardiacophrenic artery, usually opens into the internal mammary vein." [http://en.wikipedia.org/wiki/Superior_phrenic_vein] +xref: FMA:78121 +xref: http://en.wikipedia.org/wiki/Superior_phrenic_vein +xref: http://www.snomedbrowser.com/Codes/Details/198356008 +is_a: UBERON:0012193 {source="cjm"} ! phrenic vein + +[Term] +id: UBERON:0012238 +name: ureteric bud trunk +def: "ureteric bud cells that elongate to form a rigid structure (stalk) consisting of polarized epithelial cells without branching; the stalks differentiate into the collecting system of the mature kidney, while the tip cells interact with the adjacent cells of the metanephric mesenchyme, inducing their conversion into nephrons." [MP:0011761] +subset: pheno_slim +synonym: "ureteric bud stalk" RELATED [MP:0011761] +synonym: "ureteric stalk" RELATED [EMAPA:27608] +synonym: "ureteric trunk" RELATED [EMAPA:27608] +xref: EMAPA:27608 +xref: EMAPA:27697 +is_a: UBERON:0000083 ! mesonephric tubule +is_a: UBERON:0010137 ! polarized epithelium +is_a: UBERON:0034969 ! epithelial layer of duct +relationship: contributes_to_morphology_of UBERON:0000084 ! ureteric bud +relationship: part_of UBERON:0000084 ! ureteric bud + +[Term] +id: UBERON:0012239 +name: urinary bladder vasculature +def: "network of tubes that carries blood through the distensible musculomembranous organ that serves to collect and store urine excreted by the kidneys[MP]" [MP:MP] +subset: pheno_slim +synonym: "bladder vasculature" EXACT [] +synonym: "blood vessel of bladder" RELATED [EMAPA:28679] +synonym: "blood vessels of bladder" EXACT [EMAPA:28679] +synonym: "set of urinary bladder blood vessels" EXACT [] +xref: EMAPA:28679 +is_a: UBERON:0002201 ! vasculature of trunk +is_a: UBERON:0006876 ! vasculature of organ +intersection_of: UBERON:0002049 {source="EMAPA"} ! vasculature +intersection_of: part_of UBERON:0001255 {source="EMAPA"} ! urinary bladder +relationship: contributes_to_morphology_of UBERON:0001255 ! urinary bladder +relationship: part_of UBERON:0001255 ! urinary bladder + +[Term] +id: UBERON:0012240 +name: urethral meatus +def: "external opening or orifice of the urethra through which urine and seminal fluid (in males only) leave the body; in males the meatus presents as a vertical slit normally positioned at the tip of glans penis; in females the meatus is located between the clitoris and the vagina in the vulvular vestibule of the female genitalia[MP]." [http://en.wikipedia.org/wiki/Urinary_meatus, MP:MP] +subset: pheno_slim +synonym: "external meatus of urethra" EXACT [FMA:19650] +synonym: "external urethral orifice" EXACT [FMA:19650] +synonym: "external urethral ostium" EXACT [FMA:19650] +synonym: "external urinary meatus" EXACT [FMA:19650] +synonym: "meatus urinarius" EXACT LATIN [] +synonym: "orificium urethrae externum" EXACT LATIN [] +synonym: "orificium urethræ externum" EXACT LATIN [] +synonym: "urethral meatus" EXACT [FMA:19650] +synonym: "urinary meatus" RELATED [] +xref: EMAPA:37977 {source="MA:th"} +xref: FMA:19650 +xref: http://www.snomedbrowser.com/Codes/Details/181424008 +xref: Urinary:meatus +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010418 ! urethral opening +intersection_of: UBERON:0000161 ! orifice +intersection_of: connects UBERON:0010390 ! lumen of urethra +intersection_of: connects UBERON:0013514 ! space surrounding organism +intersection_of: part_of UBERON:0000057 ! urethra +relationship: connects UBERON:0010390 ! lumen of urethra +relationship: connects UBERON:0013514 ! space surrounding organism +relationship: part_of UBERON:0000057 ! urethra + +[Term] +id: UBERON:0012241 +name: male urethral meatus +def: "A urethral meatus that is part of a male urethra[Automatically generated definition]." [http://en.wikipedia.org/wiki/External_urethral_orifice_(male), OBOL:automatic] +synonym: "distal urethral opening of male" RELATED [EMAPA:36434] +synonym: "external orifice of male urethra" EXACT [FMA:85265] +synonym: "external urethral orifice (male)" EXACT [FMA:85265] +synonym: "male urethra ostium" EXACT [MA:0002642] +synonym: "ostium urethrae externum (urethra masculina)" EXACT LATIN [FMA:TA] +synonym: "urethral meatus of penile urethra" EXACT [EMAPA:36434] +synonym: "urethral opening of penile urethra" RELATED [EMAPA:36434] +xref: EMAPA:36434 +xref: FMA:85265 +xref: http://en.wikipedia.org/wiki/External_urethral_orifice_(male) +xref: http://www.snomedbrowser.com/Codes/Details/279478000 +xref: MA:0002642 +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0012240 ! urethral meatus +intersection_of: UBERON:0012240 ! urethral meatus +intersection_of: part_of UBERON:0003101 ! male organism +relationship: part_of UBERON:0001299 ! glans penis +relationship: part_of UBERON:0001333 ! male urethra + +[Term] +id: UBERON:0012242 +name: internal urethral orifice +def: "the usually crescent-shaped opening of the urinary bladder into the urethra, placed at the anteroinferior angle (apex) of the urinary bladder trigone" [MGI:anna, MP:0011782] +subset: pheno_slim +synonym: "internal meatus of urethra" EXACT [FMA:85263] +synonym: "internal urethral orifice of urinary bladder" EXACT [FMA:85263] +synonym: "internal urethral ostium" EXACT [FMA:85263] +synonym: "internal urethral ostium" RELATED [MP:0011782] +synonym: "internal urinary meatus" RELATED [MP:0011782] +synonym: "orificium urethrae internum" EXACT LATIN [MP:0011782] +synonym: "ostium orificium internum" EXACT LATIN [] +synonym: "ostium urethrae internum" EXACT LATIN [http://en.wikipedia.org/wiki/Internal_urethral_orifice] +synonym: "vesicourethral orifice" EXACT [FMA:85263] +xref: FMA:85263 +xref: http://en.wikipedia.org/wiki/Internal_urethral_orifice +xref: http://www.snomedbrowser.com/Codes/Details/362228001 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010418 ! urethral opening +intersection_of: UBERON:0000161 ! orifice +intersection_of: connects UBERON:0009958 ! bladder lumen +intersection_of: connects UBERON:0010390 ! lumen of urethra +intersection_of: part_of UBERON:0000057 ! urethra +relationship: connects UBERON:0009958 ! bladder lumen +relationship: connects UBERON:0010390 ! lumen of urethra +relationship: part_of UBERON:0000057 ! urethra + +[Term] +id: UBERON:0012243 +name: nuptial pad +def: "Raised calluses of cornified epidermis used by the male to hold the female during mating." [ISBN:0073040584] +synonym: "nuptial ball" EXACT [http://en.wikipedia.org/wiki/Nuptial_pad] +synonym: "nuptial excrescence" EXACT [http://en.wikipedia.org/wiki/Nuptial_pad] +synonym: "thumb pad" RELATED [http://en.wikipedia.org/wiki/Nuptial_pad] +xref: AAO:0010177 +xref: Nuptial:pad +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:3000981 ! limb external integument structure +relationship: part_of UBERON:0001003 {source="ISBN:0073040584"} ! skin epidermis +relationship: part_of UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0012244 +name: stratum intermedium of epidermis +def: "A temporary layer between old and new skin that is invalided by white blood cells[Kardong]." [ISBN:0073040584] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0013754 ! integumentary system layer +relationship: part_of UBERON:0001003 {source="ISBN:0073040584"} ! skin epidermis + +[Term] +id: UBERON:0012245 +name: silk +def: "A protein fiber composed mainly of fibroin and produced by certain arthropods[WP,modified]." [http://en.wikipedia.org/wiki/Silk] +xref: http://en.wikipedia.org/wiki/Silk +xref: SPD:0000318 +is_a: UBERON:0000463 {source="SPD"} ! organism substance + +[Term] +id: UBERON:0012246 +name: thyroid follicular lumen +def: "A follicular lumen is the closed cavity within a follicle of the thyroid gland. It is surrounded by follicular cells and filled with colloid, a concentrated solution of thyroglobulin" [http://en.wikipedia.org/wiki/Follicular_lumen] +synonym: "follicular lumen" BROAD [http://en.wikipedia.org/wiki/Follicular_lumen] +synonym: "lumen of thyroid follicle" EXACT [FMA:68829] +synonym: "thyroid follicle lumen" EXACT [FMA:68829] +synonym: "thyroid follicular space" EXACT [FMA:68829] +xref: FMA:68829 +xref: Follicular:lumen +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0005305 ! thyroid follicle +relationship: luminal_space_of UBERON:0005305 ! thyroid follicle +relationship: part_of UBERON:0005305 ! thyroid follicle +relationship: surrounded_by UBERON:0012363 ! thyroid follicle epithelium + +[Term] +id: UBERON:0012247 +name: cervical gland +def: "mucus-secreting glands in the mucosa of the uterine cervix" [http://www.thefreedictionary.com/cervical+glands] +synonym: "glandulae cervicales" EXACT [FMA:TA] +xref: http://linkedlifedata.com/resource/umls/id/C2724437 +xref: http://www.snomedbrowser.com/Codes/Details/280836000 +xref: NCIT:C32296 +xref: UMLS:C2724437 {source="ncithesaurus:Cervical_Gland"} +is_a: UBERON:0002451 ! endometrial gland +intersection_of: UBERON:0002365 ! exocrine gland +intersection_of: part_of UBERON:0000002 ! uterine cervix +relationship: fma_set_term FMA:71646 +relationship: part_of UBERON:0012248 ! cervical mucosa + +[Term] +id: UBERON:0012248 +name: cervical mucosa +def: "Lining of the head of the uterus (cervix); contains large branched glands; does not undergo sloughing." [BTO:0000411] +xref: BTO:0000411 +is_a: UBERON:0001295 ! endometrium +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0000002 ! uterine cervix +relationship: part_of UBERON:0000002 ! uterine cervix + +[Term] +id: UBERON:0012249 +name: ectocervix +alt_id: UBERON:0010182 +def: "The part of the cervix uteri that protrudes into the vagina and is lined with stratified squamous epithelium." [BTO:0001850, http://en.wikipedia.org/wiki/Vaginal_portion_of_cervix] +synonym: "ectocervix" EXACT [BTO:0001850] +synonym: "ectocervix" EXACT [FMA:86484] +synonym: "exocervix" RELATED [BTO:0001850] +synonym: "portio vaginalis" EXACT [http://en.wikipedia.org/wiki/Vaginal_portion_of_cervix] +synonym: "portio vaginalis cervicis" EXACT LATIN [BTO:0001850] +synonym: "uterine ectocervix" EXACT [CALOHA:TS-1098] +synonym: "vaginal part of cervix" EXACT [FMA:77056] +xref: BTO:0001850 +xref: CALOHA:TS-1098 +xref: FMA:77056 +xref: FMA:86484 +xref: http://en.wikipedia.org/wiki/Vaginal_portion_of_cervix +xref: http://linkedlifedata.com/resource/umls/id/C0227829 +xref: http://www.snomedbrowser.com/Codes/Details/264459002 +xref: NCIT:C12310 +xref: UMLS:C0227829 {source="ncithesaurus:Ectocervix"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0000064 ! organ part +intersection_of: distalmost_part_of UBERON:0000002 ! uterine cervix +relationship: distalmost_part_of UBERON:0000002 ! uterine cervix +relationship: has_part UBERON:0010304 ! non-keratinized stratified squamous epithelium +relationship: part_of UBERON:0000002 {source="BTO"} ! uterine cervix +relationship: proximal_to UBERON:0000996 ! vagina + +[Term] +id: UBERON:0012250 +name: cervix glandular epithelium +def: "A glandular epithelium that is part of a uterine cervix." [OBOL:automatic] +synonym: "cervix columnar epithelium" RELATED [] +xref: http://linkedlifedata.com/resource/umls/id/C1707350 +xref: NCIT:C54414 +xref: UMLS:C1707350 {source="ncithesaurus:Cervix_Columnar_Epithelium"} +is_a: UBERON:0004801 ! cervix epithelium +is_a: UBERON:0006799 ! glandular epithelium +intersection_of: UBERON:0006799 ! glandular epithelium +intersection_of: part_of UBERON:0000002 ! uterine cervix + +[Term] +id: UBERON:0012251 +name: ectocervical epithelium +def: "A epithelium that is part of a ectocervix." [OBOL:automatic] +synonym: "exocervical epithelium" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/361376000 +is_a: UBERON:0004801 ! cervix epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0012249 ! ectocervix +relationship: part_of UBERON:0012249 ! ectocervix + +[Term] +id: UBERON:0012252 +name: endocervical epithelium +def: "The glandular epithelium that lines the endocervix." [ncithesaurus:Endocervical_Glandular_Epithelium] +synonym: "endocervical glandular epithelium" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/362256006 +xref: NCIT:C96180 +is_a: UBERON:0012250 ! cervix glandular epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000458 ! endocervix +relationship: part_of UBERON:0000458 ! endocervix + +[Term] +id: UBERON:0012253 +name: cervical squamo-columnar junction +def: "Region of cervical epithelium where columnar epithelium of endocervic and the stratified non-keratinising squamous epithelium of the ectocervic meet" [http://www.asccp.org/practicemanagement/cervix/histologyofthenormalcervix/tabid/5842/default.aspx] +comment: Site of 90% of lower genital tract neoplasia. This junction is presumed, but not proven, to be the embryologic junction of the Müllerian and urogenital sinus epithelia. +synonym: "squamo-columnar junction of uterine cervix" EXACT [] +synonym: "squamocolumnar junction" BROAD [] +synonym: "squamocolumnar junction of uterine cervix" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/280451001 +xref: NCIT:C97148 +is_a: UBERON:0004801 ! cervix epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: continuous_with UBERON:0006922 ! cervix squamous epithelium +intersection_of: continuous_with UBERON:0012250 ! cervix glandular epithelium +intersection_of: part_of UBERON:0000002 ! uterine cervix +relationship: continuous_with UBERON:0006922 ! cervix squamous epithelium +relationship: continuous_with UBERON:0012250 ! cervix glandular epithelium + +[Term] +id: UBERON:0012254 +name: abdominal aorta artery +def: "An artery that originates from the abdominal aorta" [http://en.wikipedia.org/wiki/Abdominal_aorta#Branches, https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "abdominal artery" EXACT [] +synonym: "artery of abdomen" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/281470000 +is_a: UBERON:0004573 ! systemic artery +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0001516 ! abdominal aorta +relationship: branching_part_of UBERON:0001516 ! abdominal aorta +relationship: part_of UBERON:0001516 ! abdominal aorta + +[Term] +id: UBERON:0012255 +name: inferior phrenic artery +def: "The inferior phrenic arteries are two small vessels, which supply the diaphragm but present much variety in their origin. They may arise separately from the front of the aorta, immediately above the celiac artery, or by a common trunk, which may spring either from the aorta or from the celiac artery. Sometimes one is derived from the aorta, and the other from one of the renal arteries; they rarely arise as separate vessels from the aorta. They diverge from one another across the crura of the diaphragm, and then run obliquely upward and lateralward upon its under surface. The left phrenic passes behind the esophagus, and runs forward on the left side of the esophageal hiatus. The right phrenic passes behind the inferior vena cava, and along the right side of the foramen which transmits that vein. Near the back part of the central tendon each vessel divides into a medial and a lateral branch. The medial branch curves forward, and anastomoses with its fellow of the opposite side, and with the musculophrenic and pericardiacophrenic arteries. The lateral branch passes toward the side of the thorax, and anastomoses with the lower intercostal arteries, and with the musculophrenic. The lateral branch of the right phrenic gives off a few vessels to the inferior vena cava; and the left one, some branches to the esophagus. Each vessel gives off superior suprarenal branches to the suprarenal gland of its own side. The spleen and the liver also receive a few twigs from the left and right vessels respectively." [http://en.wikipedia.org/wiki/Inferior_phrenic_arteries] +synonym: "arteriae phrenicae inferiores" EXACT LATIN [http://en.wikipedia.org/wiki/Inferior_phrenic_artery] +synonym: "inferior phrenic artery" RELATED [http://en.wikipedia.org/wiki/Inferior_phrenic_arteries] +xref: FMA:14734 +xref: http://en.wikipedia.org/wiki/Inferior_phrenic_arteries +xref: http://www.snomedbrowser.com/Codes/Details/244283000 +is_a: UBERON:0002057 ! phrenic artery +is_a: UBERON:0012254 ! abdominal aorta artery + +[Term] +id: UBERON:0012256 +name: digestive syncytial vacuole +is_a: UBERON:0005162 ! multi cell part structure +relationship: has_part UBERON:0002553 ! anatomical cavity +relationship: part_of UBERON:0001007 ! digestive system +relationship: present_in_taxon NCBITaxon:147099 {source="http://en.wikipedia.org/wiki/Acoelomorpha"} + +[Term] +id: UBERON:0012260 +name: alular digit +def: "A manual digit found in Aves that is the most preaxial position and is morphologically similar to digit 1 in the standard tetrapod configuration and develops from embryonic digit 2, with contributions from embryonic digit 1." [http://www.ncbi.nlm.nih.gov/pubmed/10220427, https://github.com/obophenotype/uberon/issues/247, https://github.com/obophenotype/uberon/issues/264, PhenoscapeRCN:Oct2012] +comment: Hypothesized to be homologous to manual digit 1 of other tetrapods. Develops from the embryonic digit that is positionally the 2nd, with contributions from the 1st +synonym: "alula" NARROW [] +synonym: "alula (Aves)" NARROW [] +synonym: "digit I of manus" RELATED [] +synonym: "digit I(CII) of manus" RELATED [] +synonym: "wing digit 1 (adult)" RELATED [] +synonym: "wing digit 2 (embryonic)" RELATED [] +synonym: "wing digit I" RELATED [] +is_a: UBERON:0002389 ! manual digit +intersection_of: UBERON:0002389 ! manual digit +intersection_of: part_of UBERON:5012260 ! alular digit plus metapodial segment +relationship: has_developmental_contribution_from UBERON:0005692 {source="http://www.ncbi.nlm.nih.gov/pubmed/10220427"} ! manual digit 2 mesenchyme +relationship: has_developmental_contribution_from UBERON:0010564 {source="http://www.ncbi.nlm.nih.gov/pubmed/10220427"} ! manual digit 1 mesenchyme +relationship: part_of UBERON:5012260 ! alular digit plus metapodial segment +relationship: preaxialmost_part_of UBERON:0002398 ! manus + +[Term] +id: UBERON:0012261 +name: manual major digit (Aves) +def: "A manual digit found in Aves that is morphologically similar to digit 2 in the standard tetrapod configuration and develops from embryonic digit 3." [http://www.ncbi.nlm.nih.gov/pubmed/10220427, PhenoscapeRCN:Oct2012] +comment: Hypothesized to be homologous to manual digit 2 of other tetrapods +synonym: "digit II of manus" RELATED [] +synonym: "digit II(CIII) of manus" RELATED [] +synonym: "manual major digit" RELATED [] +synonym: "wing digit 2 (adult)" RELATED [] +synonym: "wing digit 3 (embryonic)" RELATED [] +synonym: "wing digit II" RELATED [] +is_a: UBERON:0002389 ! manual digit +intersection_of: UBERON:0002389 ! manual digit +intersection_of: part_of UBERON:5012261 ! manual major digit (Aves) plus metapodial segment +relationship: has_developmental_contribution_from UBERON:0005693 {source="http://www.ncbi.nlm.nih.gov/pubmed/10220427"} ! manual digit 3 mesenchyme +relationship: part_of UBERON:5012261 ! manual major digit (Aves) plus metapodial segment + +[Term] +id: UBERON:0012262 +name: manual minor digit (Aves) +def: "A manual digit found in Aves that is morphologically similar to digit 3 in the standard tetrapod configuration and develops from embryonic digit 4." [http://www.ncbi.nlm.nih.gov/pubmed/10220427, PhenoscapeRCN:Oct2012] +comment: Hypothesized to be homologous to manual digit 3 of other tetrapods +synonym: "digit III of manus" RELATED [] +synonym: "digit III(CIV) of manus" RELATED [] +synonym: "manual minor digit" RELATED [] +synonym: "wing digit 3 (adult)" RELATED [] +synonym: "wing digit 4 (embryonic)" RELATED [] +synonym: "wing digit III" RELATED [] +is_a: UBERON:0002389 ! manual digit +intersection_of: UBERON:0002389 ! manual digit +intersection_of: part_of UBERON:5012262 ! manual minor digit (Aves) plus metapodial segment +relationship: has_developmental_contribution_from UBERON:0005694 {source="http://www.ncbi.nlm.nih.gov/pubmed/10220427"} ! manual digit 4 mesenchyme +relationship: part_of UBERON:5012262 ! manual minor digit (Aves) plus metapodial segment +relationship: postaxialmost_part_of UBERON:0002398 ! manus + +[Term] +id: UBERON:0012263 +name: obsolete equine cannon bone +is_obsolete: true +replaced_by: UBERON:0013583 + +[Term] +id: UBERON:0012264 +name: obsolete equine forelimb cannon bone +is_obsolete: true +replaced_by: UBERON:0003647 + +[Term] +id: UBERON:0012265 +name: obsolete equine hindlimb cannon bone +is_obsolete: true +replaced_by: UBERON:0003652 + +[Term] +id: UBERON:0012267 +name: equine splint bone +def: "The splint bones sit either side of the equine cannon bone. Homologous to metapodium bones 2 or 4" [http://orcid.org/0000-0002-6601-2165] +synonym: "metapodial bone 2 or 4" BROAD [] +synonym: "splint bone" EXACT [NCBITaxon:9788] +is_a: UBERON:0003821 ! metapodium bone +relationship: adjacent_to UBERON:0013583 ! metapodium bone 3 + +[Term] +id: UBERON:0012268 +name: equine forelimb splint bone +def: "A splint bone in the metacarpal region" [http://orcid.org/0000-0002-6601-2165] +synonym: "forelimb splint bone" EXACT [NCBITaxon:9788] +synonym: "metacarpal bone 2 or 4" BROAD [] +is_a: UBERON:0003607 ! forelimb long bone +is_a: UBERON:0012267 ! equine splint bone +is_a: UBERON:0012358 ! manual digitopodium bone +intersection_of: UBERON:0012267 ! equine splint bone +intersection_of: part_of UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0012269 +name: equine hindlimb splint bone +def: "A splint bone in the metatarsal region" [http://orcid.org/0000-0002-6601-2165] +synonym: "hindlimb splint bone" EXACT [NCBITaxon:9788] +synonym: "metatarsal bone 2 or 4" BROAD [] +is_a: UBERON:0003608 ! hindlimb long bone +is_a: UBERON:0012267 ! equine splint bone +is_a: UBERON:0012359 ! pedal digitopodium bone +intersection_of: UBERON:0012267 ! equine splint bone +intersection_of: part_of UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0012270 +name: forestomach-glandular stomach junction +def: "the distinct low fold of tissue that separates the non-glandular area of the stomach (forestomach) from the glandular stomach; the limiting ridge extends circumferentially from the large curvature of the stomach to the small curvature, just below the esophagus; at the esophagus, the course of the limiting ridge bends into a U-shape and almost surrounds the esophageal opening" [MGI:anna] +subset: pheno_slim +synonym: "forestomach - glandular stomach squamocolumnar junction" RELATED [] +synonym: "limiting ridge of stomach" RELATED [MA:0003014] +synonym: "margo plicatus" RELATED [] +synonym: "squamo-columnar junction between forestomach and glandular stomach" RELATED [] +synonym: "squamocolumnar junction with the glandular stomach" RELATED [] +xref: EMAPA:37640 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/67204008 +xref: MA:0003014 +is_a: UBERON:1100000 ! digestive tract junction +relationship: connects UBERON:0008827 ! murine forestomach +relationship: connects UBERON:0011953 ! stomach glandular region +relationship: part_of UBERON:0000945 ! stomach + +[Term] +id: UBERON:0012271 +name: major duodenal papilla +def: "The common bile duct and the pancreatic duct together perforate the medial side of the second portion of the duodenum obliquely, some 7 to 10 cm below the pylorus, forming a structure called the major duodenal papilla. The accessory pancreatic duct sometimes pierces it about 2 cm above and slightly in front of these." [http://en.wikipedia.org/wiki/Major_duodenal_papilla] +synonym: "greater duodenal papilla" EXACT [FMA:15074] +synonym: "major papilla" RELATED [http://en.wikipedia.org/wiki/Major_duodenal_papilla] +synonym: "papilla duodeni major" RELATED LATIN [http://en.wikipedia.org/wiki/Major_duodenal_papilla] +synonym: "tubercle of Vater" EXACT [FMA:15074] +xref: FMA:15074 +xref: http://en.wikipedia.org/wiki/Major_duodenal_papilla +xref: http://www.snomedbrowser.com/Codes/Details/181272007 +is_a: UBERON:0004914 ! duodenal papilla + +[Term] +id: UBERON:0012272 +name: minor duodenal papilla +def: "The minor duodenal papilla is the opening of the accessory pancreatic duct into the duodenum. It is sometimes absent, and often nonfunctional." [http://en.wikipedia.org/wiki/Minor_duodenal_papilla] +synonym: "lesser duodenal papilla" EXACT [FMA:15075] +synonym: "minor papilla" RELATED [http://en.wikipedia.org/wiki/Minor_duodenal_papilla] +synonym: "Santorini's caruncle" EXACT [FMA:15075] +synonym: "Santorini's minor caruncle" EXACT [http://en.wikipedia.org/wiki/Minor_duodenal_papilla] +xref: FMA:15075 +xref: http://en.wikipedia.org/wiki/Minor_duodenal_papilla +xref: http://www.snomedbrowser.com/Codes/Details/245390003 +is_a: UBERON:0004914 ! duodenal papilla + +[Term] +id: UBERON:0012273 +name: periampullary region of duodenum +synonym: "periampullary region" EXACT [] +xref: http://linkedlifedata.com/resource/umls/id/C1882332 +xref: NCIT:C60699 +xref: UMLS:C1882332 {source="ncithesaurus:Periampullary_Region"} +is_a: UBERON:0004921 ! subdivision of digestive tract +relationship: part_of UBERON:0002114 ! duodenum + +[Term] +id: UBERON:0012274 +name: columnar epithelium +def: "An epithelium that consists of columnar epithelial cells. Columnar epithelia are epithelial cells whose heights are at least four times their width. Columnar epithelia are divided into simple (or unilayered), and the rarer stratified (or multi-layered).[WP, modified]" [http://en.wikipedia.org/wiki/Columnar_epithelium] +xref: Columnar:epithelium +is_a: UBERON:0000483 ! epithelium + +[Term] +id: UBERON:0012275 +name: meso-epithelium +def: "Epithelium that derives from the mesoderm. [Automatically generated definition]." [OBOL:automatic] +synonym: "mesoderm-derived epithelium" EXACT [] +synonym: "mesoepithelium" EXACT [] +xref: FMA:86452 +is_a: UBERON:0000483 ! epithelium +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0000483 ! epithelium +intersection_of: develops_from UBERON:0000926 ! mesoderm + +[Term] +id: UBERON:0012276 +name: endometrium glandular epithelium +synonym: "glandular part of endometrium" EXACT [FMA:86488] +synonym: "uterine glands" EXACT [] +synonym: "uterine glands set" EXACT [] +xref: EMAPA:35308 +xref: FMA:86488 +xref: MA:0002732 +is_a: UBERON:0004811 ! endometrium epithelium +is_a: UBERON:0006929 ! glandular columnar epithelium +is_a: UBERON:0007589 ! ciliated columnar oviduct epithelium +intersection_of: UBERON:0006799 ! glandular epithelium +intersection_of: part_of UBERON:0004811 ! endometrium epithelium + +[Term] +id: UBERON:0012278 +name: gland of nasal mucosa +def: "The nasal glands are the seromucous glands in the respiratory region of the nasal mucous membrane. The three major types of nasal glands are anterior serous glands, seromucous glands, and Bowman glands." [http://en.wikipedia.org/wiki/Nasal_glands] +subset: pheno_slim +synonym: "glandula nasalis" EXACT LATIN [] +synonym: "glandulae nasales" EXACT LATIN [] +synonym: "nasal gland" BROAD [] +xref: EMAPA:37871 {source="MA:th"} +xref: FMA:321518 +xref: http://linkedlifedata.com/resource/umls/id/C1522269 +xref: http://www.snomedbrowser.com/Codes/Details/368881007 +xref: Nasal:glands +xref: NCIT:C22725 +xref: UMLS:C1522269 {source="ncithesaurus:Nose_Nasal_Cavity_Nasal_Gland_MMHCC"} +is_a: UBERON:0002365 ! exocrine gland +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0036225 ! respiratory system gland +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0001826 ! nasal cavity mucosa +relationship: part_of UBERON:0001826 ! nasal cavity mucosa + +[Term] +id: UBERON:0012279 +name: chromaffin paraganglion +def: "Small bodies containing chromaffin cells occurring outside of the adrenal medulla, most commonly near the sympathetic ganglia and in organs such as the kidney, liver, heart and gonads." [http://en.wikipedia.org/wiki/Paraganglion, MESH:A06.224.736] +synonym: "chromaffin body" RELATED [MESH:A06.224.736] +synonym: "chromaffin paraganglia" RELATED PLURAL [MESH:A06.224.736] +synonym: "chromaffin paraganglion" RELATED [MESH:A06.224.736] +synonym: "paraganglion" BROAD [ncithesaurus:Paraganglion] +xref: CALOHA:TS-2358 +xref: http://linkedlifedata.com/resource/umls/id/C0030419 +xref: MESH:D010233 +xref: NCIT:C94826 +xref: UMLS:C0030419 {source="ncithesaurus:Paraganglion"} +is_a: UBERON:0034978 ! paraganglion (generic) +disjoint_from: UBERON:0034979 ! nonchromaffin paraganglion +relationship: part_of UBERON:0010074 ! chromaffin system + +[Term] +id: UBERON:0012281 +name: perianal sebaceous gland +def: "A holocrine gland that is part of the pilosebaceous unit of a hair located in the area around the anus." [ISBN:0123813611] +subset: pheno_slim +synonym: "circumanal gland" RELATED [MESH:A13.734] +synonym: "perianal gland" RELATED [MESH:A13.734] +xref: EMAPA:37936 {source="MA:th"} +xref: MESH:D010481 +xref: NCIT:C77620 +is_a: UBERON:0005179 ! pelvic region element +is_a: UBERON:0015251 {source="ISBN:0123813611"} ! modified sebaceous gland +is_a: UBERON:0016852 ! skin scent gland +intersection_of: UBERON:0001821 ! sebaceous gland +intersection_of: part_of UBERON:0011932 ! pilosebaceous unit +intersection_of: part_of UBERON:0012336 ! perianal skin +relationship: part_of UBERON:0012336 ! perianal skin + +[Term] +id: UBERON:0012282 +name: mammary fat pad +def: "encapsulated adipose tissue associated with the mammary gland" [MGI:csmith] +subset: pheno_slim +xref: EMAPA:37901 {source="MA:th"} +is_a: UBERON:0003916 ! fat pad +is_a: UBERON:0004180 ! mammary gland fat +intersection_of: UBERON:0003916 ! fat pad +intersection_of: part_of UBERON:0001911 ! mammary gland + +[Term] +id: UBERON:0012283 +name: femoral fat pad +def: "encapsulated adipose tissue associated with the femur" [MP:0008905] +synonym: "femoral fat depot" EXACT [MP:0008905] +is_a: UBERON:0003916 ! fat pad +is_a: UBERON:0004266 ! upper leg connective tissue +intersection_of: UBERON:0003916 ! fat pad +intersection_of: part_of UBERON:0000376 ! hindlimb stylopod + +[Term] +id: UBERON:0012284 +name: animal hemisphere +subset: early_development +synonym: "animal pole" RELATED [] +synonym: "animal pole of blastomere" NARROW [] +synonym: "animal pole of zygote" NARROW [] +xref: AAO:0010325 +xref: XAO:0000202 +is_a: UBERON:0012286 ! hemisphere of embryo + +[Term] +id: UBERON:0012285 +name: vegetal hemisphere +subset: early_development +synonym: "vegetal pole" RELATED [] +synonym: "vegetal pole of blastomere" NARROW [] +synonym: "vegetal pole of zygote" NARROW [] +xref: AAO:0010331 +xref: XAO:0000280 +is_a: UBERON:0012286 ! hemisphere of embryo + +[Term] +id: UBERON:0012286 +name: hemisphere of embryo +def: "One of two hemispheres of the embryo at the zygote or blastula stage[WP,modified]" [http://en.wikipedia.org/wiki/Polarity_in_embryogenesis, https://github.com/obophenotype/uberon/issues/153] +subset: early_development +synonym: "pole of embryo" RELATED [] +xref: FMA:293351 +xref: http://en.wikipedia.org/wiki/Polarity_in_embryogenesis +is_a: UBERON:0002050 ! embryonic structure +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +relationship: existence_starts_during UBERON:0000106 {source="XAO"} ! zygote stage + +[Term] +id: UBERON:0012287 +name: Rathkes pouch epithelium +def: "A epithelial sac that is part of a Rathke's pouch." [OBOL:automatic] +xref: EHDAA2:0001473 +xref: EMAPA:25036 +is_a: UBERON:0004906 ! ectodermal part of digestive tract +is_a: UBERON:0007499 ! epithelial sac +is_a: UBERON:0009854 ! digestive tract diverticulum +is_a: UBERON:0011642 ! oral epithelium from ectoderm +intersection_of: UBERON:0007499 ! epithelial sac +intersection_of: adjacent_to UBERON:0009974 ! lumen of Rathke's pouch +intersection_of: part_of UBERON:0005356 ! Rathke's pouch +relationship: adjacent_to UBERON:0009974 ! lumen of Rathke's pouch +relationship: part_of UBERON:0005356 ! Rathke's pouch + +[Term] +id: UBERON:0012288 +name: centroquartal bone +def: "A tarsal bone that is formed from the fusion of the central and 4th tarsal bones." [UBERON:skansa] +synonym: "os centroquartale" EXACT LATIN [NominaAnatomicaVeterinaria:2005] +synonym: "os naviculocuboideum" EXACT LATIN [NominaAnatomicaVeterinaria:2005] +is_a: UBERON:0001447 ! tarsal bone +intersection_of: UBERON:0001447 ! tarsal bone +intersection_of: has_fused_element UBERON:0001451 ! navicular bone of pes +intersection_of: has_fused_element UBERON:0010737 ! distal tarsal bone 4 +relationship: has_fused_element UBERON:0001451 ! navicular bone of pes +relationship: has_fused_element UBERON:0010737 ! distal tarsal bone 4 + +[Term] +id: UBERON:0012289 +name: fused tarsal bones 2 and 3 +def: "A tarsal bone that is formed from the fusion of the 2nd and 3rd tarsal bones." [UBERON:skansa] +synonym: "fused tarsals 2 and 3" EXACT [] +synonym: "os cuneiforme intermediolaterale" EXACT LATIN [NominaAnatomicaVeterinaria:2005] +synonym: "os tarsale II et III" EXACT LATIN [NominaAnatomicaVeterinaria:2005] +synonym: "tarsals 2+3" RELATED [] +is_a: UBERON:0010721 ! distal tarsal bone +intersection_of: UBERON:0001447 ! tarsal bone +intersection_of: has_fused_element UBERON:0001453 ! distal tarsal bone 2 +intersection_of: has_fused_element UBERON:0001454 ! distal tarsal bone 3 +relationship: has_fused_element UBERON:0001453 ! distal tarsal bone 2 +relationship: has_fused_element UBERON:0001454 ! distal tarsal bone 3 + +[Term] +id: UBERON:0012290 +name: fused carpal bones 2 and 3 +def: "A carpal bone that is formed from the fusion of the 2nd and 3rd distal carpal bones." [UBERON:skansa] +synonym: "carpals 2+3" RELATED [] +synonym: "fused carpals 2 and 3" EXACT [] +is_a: UBERON:0001481 ! distal carpal bone +intersection_of: UBERON:0001435 ! carpal bone +intersection_of: has_fused_element UBERON:0001431 ! distal carpal bone 2 +intersection_of: has_fused_element UBERON:0001432 ! distal carpal bone 3 +relationship: has_fused_element UBERON:0001431 ! distal carpal bone 2 +relationship: has_fused_element UBERON:0001432 ! distal carpal bone 3 + +[Term] +id: UBERON:0012291 +name: lateral malleolus of fibula +def: "Malleolus is the name for the bony prominence on each side of the ankle." [http://en.wikipedia.org/wiki/Malleolus] +synonym: "distal extremity of fibula" RELATED [http://en.wikipedia.org/wiki/Malleolus#Lateral_malleolus] +synonym: "external malleolus of fibula" RELATED [http://en.wikipedia.org/wiki/Malleolus#Lateral_malleolus] +synonym: "fibular malleolus" RELATED [] +synonym: "lateral malleolus" BROAD [FMA:35502] +synonym: "malleolar bone" NARROW SENSU [] +synonym: "malleolar bone of ankle" NARROW SENSU [] +xref: EMAPA:37893 {source="MA:th"} +xref: FMA:35502 +xref: http://en.wikipedia.org/wiki/Malleolus +xref: http://www.snomedbrowser.com/Codes/Details/361795009 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +relationship: part_of UBERON:0004410 ! distal epiphysis of fibula + +[Term] +id: UBERON:0012292 +name: embryonic cloacal fold +def: "One of the pair of mesenchymal swellings (folds) located on either side of the cloacal membrane during the indifferent stage of embryonic development; cranial to the cloacal membrane the folds unite to form the genital tubercle; caudally the folds are subdivided into urogenital folds anteriorly and anal folds posteriorly" [MP:0011836, MP:anna] +comment: We presume this is distinct from AAO:0001003, an external integumentary structure - check with amphibian anatomy ontology developers. AO notes: the text def states mesenchymal swelling, EHDAA2 splits into mesenchymal and epithelial parts +synonym: "cloacal fold" BROAD [EHDAA2:0004009] +xref: EHDAA2:0004009 +is_a: UBERON:0000481 ! multi-tissue structure +relationship: adjacent_to UBERON:0006217 ! cloacal membrane +relationship: part_of UBERON:0000922 ! embryo +relationship: part_of UBERON:0012469 {source="EHDAA2"} ! external anal region + +[Term] +id: UBERON:0012293 +name: anal fold +def: "A slight elevation flanking the cloacal membrane and derived from a cloacal fold; anal folds form the border of the anus." [http://medical-dictionary.thefreedictionary.com/anal+fold] +xref: EHDAA2:0004012 +xref: EMAPA:37392 {source="MA:th"} +is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure +relationship: develops_from UBERON:0012292 {source="EHDAA2"} ! embryonic cloacal fold +relationship: part_of UBERON:0001353 ! anal region + +[Term] +id: UBERON:0012294 +name: navicular fossa of spongiose part of urethra +def: "The dilated terminal portion of the male spongy urethra located in the glans penis right before the external urethral orifice, also referred to as the most distal pendulous urethra; it is lined by stratified squamous, non-keratinizing epithelium; during development, the glans of the penis is initially solid but cannulates to give rise to the navicular fossa." [http://en.wikipedia.org/wiki/Navicular_fossa_of_male_urethra, MP:0011838, MP:anna] +subset: pheno_slim +synonym: "fossa navicularis of urethra" EXACT [] +synonym: "fossa navicularis urethrae" EXACT [FMA:TA] +synonym: "fossa navicularis urethrae" RELATED [http://en.wikipedia.org/wiki/Navicular_fossa_of_male_urethra] +synonym: "fossa navicularis urethrae (pars spongiosa, urethra masculina)" EXACT [FMA:19722] +synonym: "navicular fossa" EXACT [FMA:19722] +synonym: "navicular fossa of urethra" EXACT [] +xref: FMA:19722 +xref: http://en.wikipedia.org/wiki/Navicular_fossa_of_male_urethra +xref: http://www.snomedbrowser.com/Codes/Details/362233002 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0013522 ! subdivision of tube +relationship: contributes_to_morphology_of UBERON:0001337 ! spongiose part of urethra +relationship: has_part UBERON:0010304 ! non-keratinized stratified squamous epithelium +relationship: part_of UBERON:0001337 ! spongiose part of urethra + +[Term] +id: UBERON:0012295 +name: Guérin's valve +def: "An inconstant fold or valve of mucous membrane sometimes found in the root or upper wall of the navicular fossa of the urethra" [http://www.drugs.com/dict/valve-of-navicular-fossa.html, MP:0011839, MP:anna] +subset: pheno_slim +synonym: "Guerin's valve" EXACT [] +synonym: "Guérin's fold" EXACT [http://www.drugs.com/dict/valve-of-navicular-fossa.html] +synonym: "Guérin's valvule" EXACT [MP:anna] +synonym: "urethral valve of Guérin" EXACT [MP:anna] +synonym: "valve of fossa navicularis of urethra" EXACT [] +synonym: "valvula fossae navicularis" EXACT LATIN [MP:anna] +xref: FMA:19781 +xref: http://www.snomedbrowser.com/Codes/Details/367737008 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0034944 ! zone of organ +relationship: contributes_to_morphology_of UBERON:0012294 ! navicular fossa of spongiose part of urethra +relationship: part_of UBERON:0012294 ! navicular fossa of spongiose part of urethra +relationship: part_of UBERON:0012299 ! mucosa of urethra + +[Term] +id: UBERON:0012296 +name: urethral crest +def: "A longitudinal mucosal fold in the dorsal wall of the urethra[MP]" [http://en.wikipedia.org/wiki/Urethral_crest, MP:0011840, MP:anna] +subset: pheno_slim +synonym: "crista of urethra" EXACT [] +synonym: "crista urethralis" EXACT LATIN [MP:anna] +synonym: "urethral crista" EXACT [] +xref: FMA:19718 +xref: http://www.snomedbrowser.com/Codes/Details/362231000 +xref: Urethral:crest +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0034944 ! zone of organ +relationship: contributes_to_morphology_of UBERON:0000057 ! urethra +relationship: part_of UBERON:0012299 ! mucosa of urethra + +[Term] +id: UBERON:0012297 +name: male urethral crest +def: "narrow longitudinal fold of mucosa on the posterior wall of the male urethra, extending from the uvula of the bladder through the prostatic urethra; when distended, it may serve to prevent the passage of the semen backward into the bladder; on either side of the male urethral crest is a slightly depressed fossa, the prostatic sinus, the floor of which is perforated by the orifices of the prostatic ducts from the lateral lobes of the prostate; the ducts of the middle lobe open behind the crest; at the forepart of the crest, below its summit, is a median elevation, the colliculus seminalis, upon or within the margins of which are the orifices of the prostatic utricle and the slit-like openings of the ejaculatory ducts[MP]" [MP:0011841, MP:anna] +subset: pheno_slim +synonym: "crista phallica" EXACT LATIN [MP:anna] +synonym: "crista urethralis masculinae" EXACT LATIN [MP:anna] +synonym: "urethral crest (male)" EXACT [FMA:85270] +synonym: "urethral crest of male" EXACT [MP:anna] +xref: FMA:85270 +xref: http://www.snomedbrowser.com/Codes/Details/279470007 +is_a: UBERON:0012296 ! urethral crest +intersection_of: UBERON:0012296 ! urethral crest +intersection_of: part_of UBERON:0003101 ! male organism +relationship: contributes_to_morphology_of UBERON:0001333 ! male urethra +relationship: part_of UBERON:0005015 {source="cjm"} ! mucosa of prostatic urethra + +[Term] +id: UBERON:0012298 +name: female urethral crest +def: "The conspicuous longitudinal fold of mucosa on the posterior wall of the female urethra[MP]" [MP:0011842, MP:anna] +subset: pheno_slim +synonym: "crista urethralis femininae" EXACT LATIN [MP:anna] +synonym: "urethral crest (female)" EXACT [FMA:85271] +synonym: "urethral crest of female" EXACT [MP:anna] +xref: FMA:85271 +xref: http://www.snomedbrowser.com/Codes/Details/279471006 +is_a: UBERON:0012296 ! urethral crest +intersection_of: UBERON:0012296 ! urethral crest +intersection_of: part_of UBERON:0003100 ! female organism +relationship: contributes_to_morphology_of UBERON:0001334 ! female urethra +relationship: part_of UBERON:0005014 {source="cjm"} ! mucosa of female urethra + +[Term] +id: UBERON:0012299 +name: mucosa of urethra +def: "A mucosa that is part of a urethra." [OBOL:automatic] +synonym: "mucous membrane of urethra" EXACT [FMA:76904] +synonym: "tunica mucosa urethrae" EXACT [FMA:TA] +synonym: "urethral mucosa" EXACT [FMA:76904] +xref: EMAPA:37912 {source="MA:th"} +xref: FMA:76904 +xref: http://www.snomedbrowser.com/Codes/Details/362229009 +is_a: UBERON:0000344 ! mucosa +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0000057 ! urethra +relationship: part_of UBERON:0000057 ! urethra + +[Term] +id: UBERON:0012300 +name: limb paddle +def: "A transient developing limb structure that develops from the limb bud; it is a dorsoventral flattening of the limb bud structure and develops into the foot plate" [MP:0011685] +subset: pheno_slim +is_a: UBERON:0005423 ! developing anatomical structure +relationship: develops_from UBERON:0004347 ! limb bud + +[Term] +id: UBERON:0012301 +name: female membranous urethra +def: "A membranous urethra of male or female that is part of a female urethra." [OBOL:automatic] +xref: EMAPA:37537 {source="MA:th"} +xref: MA:0002638 +is_a: UBERON:0001336 ! membranous urethra of male or female +intersection_of: UBERON:0001336 ! membranous urethra of male or female +intersection_of: part_of UBERON:0001334 ! female urethra +relationship: part_of UBERON:0001334 ! female urethra + +[Term] +id: UBERON:0012302 +name: male membranous urethra +def: "the shortest, least dilatable, and, with the exception of the external orifice, the narrowest part of the male urethral canal located in the deep perineal pouch and lined by pseudostratified columnar epithelium; it extends downward and forward, with a slight anterior concavity, between the apex of the prostate and the bulb of the urethra, perforating the urogenital diaphragm below and behind the pubic symphysis; the membranous portion of the urethra is completely surrounded by the fibers of the sphincter urethrae membranaceae; on either side near its termination are the bulbourethral glands" [MGI:anna, MP:0011778] +subset: pheno_slim +synonym: "intermediate part of male urethra" RELATED [http://en.wikipedia.org/wiki/Membranous_urethra] +synonym: "membranous urethra" BROAD INCONSISTENT [FMA:19674] +synonym: "pars intermedia urethrae masculinae" RELATED LATIN [http://en.wikipedia.org/wiki/Membranous_urethra] +synonym: "pars membranacea urethrae masculinae" RELATED LATIN [http://en.wikipedia.org/wiki/Membranous_urethra] +xref: FMA:19674 +xref: http://linkedlifedata.com/resource/umls/id/C0458453 +xref: http://www.snomedbrowser.com/Codes/Details/263343009 +xref: MA:0002641 +xref: Membranous:urethra +xref: NCIT:C33091 +xref: UMLS:C0458453 {source="ncithesaurus:Membranous_Urethra"} +is_a: UBERON:0001336 ! membranous urethra of male or female +intersection_of: UBERON:0001336 ! membranous urethra of male or female +intersection_of: part_of UBERON:0001333 ! male urethra +relationship: contributes_to_morphology_of UBERON:0001333 ! male urethra +relationship: part_of UBERON:0001333 ! male urethra + +[Term] +id: UBERON:0012303 +name: ureteral orifice +def: "The slit-like opening of either ureter into the bladder; normally, the two ureteral orifices are placed at the posterolateral angles of the urinary bladder trigone while the internal urethral orifice is placed at its anteroinferior angle (apex); wide gaping usually indicates vesicoureteral reflux" [http://en.wikipedia.org/wiki/Orifice_of_ureter, MP:0011783] +subset: pheno_slim +synonym: "Mercier's bar" EXACT [FMA:77047] +synonym: "orifice of ureter" EXACT [FMA:77047] +synonym: "orificium ureteris" EXACT LATIN [MP:0011783] +synonym: "ostium ureteris" EXACT LATIN [MP:0011783] +synonym: "ostium ureteris" EXACT [FMA:TA] +synonym: "ureteral meatus" EXACT [MP:0011783] +synonym: "ureteral opening" EXACT [MP:0011783] +synonym: "ureteric orifice" EXACT [FMA:77047] +synonym: "ureteric orifice" EXACT [MP:0011783] +synonym: "ureteric ostium" EXACT [FMA:77047] +synonym: "ureterovesical orifice" EXACT [FMA:77047] +synonym: "ureterovesical orifice" EXACT [MP:0011783] +xref: FMA:77047 +xref: http://en.wikipedia.org/wiki/Orifice_of_ureter +xref: http://www.snomedbrowser.com/Codes/Details/181415004 +xref: NCIT:C12337 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010418 ! urethral opening +relationship: contributes_to_morphology_of UBERON:0009973 ! ureterovesical junction +relationship: part_of UBERON:0006082 ! fundus of urinary bladder +relationship: part_of UBERON:0009973 ! ureterovesical junction + +[Term] +id: UBERON:0012304 +name: nasal diverticulum +def: "Caudally blind-ending cutaneous pouch lined with skin that occupies the nasoincisive notch. It's ventral and medial walls is formed by the alar fold. It's lateral wall is formed by the external nares and it's dorsal wall is formed by the straight fold. Lined by pigmented predominantly hairless skin. It has an external opening located on the dorsolateral aspect of the "true nostril". When the horse is exercising, obliteration of the nasal diverticulum greatly widens the nostrils increasing air intake[MURDOCH]." [ISBN:3899930983, MURDOCH:1367] +synonym: "false nostril" RELATED [] +synonym: "nasal trumpet" RELATED [ISBN:3899930983] +synonym: "soft nose" RELATED [ISBN:3899930983] +is_a: UBERON:1000021 ! skin of face +relationship: part_of UBERON:0005928 ! external naris + +[Term] +id: UBERON:0012305 +name: marginal cutaneous pouch of ear +def: "A fold of skin at the caudal border of the auricle." [ISBN:9783899930993] +synonym: "cutaneous marginal pouch" RELATED [] +synonym: "marginal cutaneous pouch" RELATED [] +is_a: UBERON:0001459 ! skin of external ear + +[Term] +id: UBERON:0012306 +name: lateral cervical lymph node +def: "A cervical lymph nodes are found in proximity to an internal or external jugular vein." [http://en.wikipedia.org/wiki/Superficial_lateral_cervical_lymph_nodes, https://github.com/obophenotype/uberon/issues/5] +synonym: "lateral cervical node" EXACT [FMA:61232] +xref: FMA:61232 +xref: http://www.snomedbrowser.com/Codes/Details/167763000 +is_a: UBERON:0002429 {source="FMA"} ! cervical lymph node +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan + +[Term] +id: UBERON:0012307 +name: anterior cervical lymph node +def: "The anterior cervical lymph nodes are a group of nodes found on the anterior part of the neck." [http://en.wikipedia.org/wiki/Anterior_cervical_lymph_nodes, https://github.com/obophenotype/uberon/issues/5] +synonym: "anterior cervical node" EXACT [] +xref: FMA:61230 +xref: http://en.wikipedia.org/wiki/Anterior_cervical_lymph_nodes +xref: http://www.snomedbrowser.com/Codes/Details/168259009 +is_a: UBERON:0002429 {source="FMA"} ! cervical lymph node +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/tmeehan + +[Term] +id: UBERON:0012308 +name: superficial lateral cervical lymph node +def: "The superficial lateral cervical lymph nodes are found in proximity to the external jugular vein." [http://en.wikipedia.org/wiki/Superficial_lateral_cervical_lymph_nodes] +synonym: "superficial lateral cervical node" EXACT [FMA:12769] +xref: FMA:12769 +xref: http://en.wikipedia.org/wiki/Superficial_lateral_cervical_lymph_nodes +xref: http://www.snomedbrowser.com/Codes/Details/50679006 +is_a: UBERON:0004870 ! superficial cervical lymph node +is_a: UBERON:0012306 {source="FMA"} ! lateral cervical lymph node + +[Term] +id: UBERON:0012309 +name: superficial anterior cervical lymph node +def: "The superficial anterior cervical lymph nodes are found in proximity to the anterior jugular vein." [http://en.wikipedia.org/wiki/Superficial_anterior_cervical_lymph_nodes] +synonym: "anterior jugular lymph node" EXACT [FMA:12776] +xref: FMA:12776 +xref: http://en.wikipedia.org/wiki/Superficial_anterior_cervical_lymph_nodes +xref: http://www.snomedbrowser.com/Codes/Details/22993006 +is_a: UBERON:0004870 ! superficial cervical lymph node +is_a: UBERON:0012307 {source="FMA"} ! anterior cervical lymph node + +[Term] +id: UBERON:0012310 +name: deep lateral cervical lymph node +def: "The deep lateral cervical lymph nodes are found near the upper part of the internal jugular vein in the neck, lateral or posterior to the carotid sheath." [http://en.wikipedia.org/wiki/Deep_lateral_cervical_lymph_nodes] +synonym: "deep lateral cervical node" EXACT [FMA:12770] +xref: FMA:12770 +xref: http://en.wikipedia.org/wiki/Deep_lateral_cervical_lymph_nodes +xref: http://www.snomedbrowser.com/Codes/Details/61755005 +is_a: UBERON:0004722 ! deep cervical lymph node +is_a: UBERON:0012306 {source="FMA"} ! lateral cervical lymph node + +[Term] +id: UBERON:0012311 +name: deep anterior cervical lymph node +def: "The deep anterior cervical lymph nodes are found near the middle cricothyroid ligament and the trachea." [http://en.wikipedia.org/wiki/Deep_anterior_cervical_lymph_nodes] +xref: FMA:12779 +xref: http://en.wikipedia.org/wiki/Deep_anterior_cervical_lymph_nodes +xref: http://www.snomedbrowser.com/Codes/Details/52363008 +is_a: UBERON:0004722 ! deep cervical lymph node +is_a: UBERON:0012307 {source="FMA"} ! anterior cervical lymph node + +[Term] +id: UBERON:0012312 +name: maxillary process ectoderm +xref: EHDAA2:0004599 +xref: EMAPA:17637 +xref: FMA:312685 +is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0005868 {source="EHDAA2"} ! maxillary prominence + +[Term] +id: UBERON:0012313 +name: 1st arch maxillary ectoderm +synonym: "ectoderm of maxillary component" EXACT [EMAPA:16389] +xref: EHDAA2:0000039 +xref: EMAPA:16389 +is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium +is_a: UBERON:0015833 ! foregut epithelium +relationship: develops_from UBERON:0000076 {source="EHDAA2"} ! external ectoderm +relationship: part_of UBERON:0000076 {source="EHDAA2"} ! external ectoderm +relationship: part_of UBERON:0007238 {source="EHDAA2"} ! 1st arch maxillary component + +[Term] +id: UBERON:0012314 +name: embryonic facial prominence +def: "One of five swellings formed during the development of the face" [http://www.indiana.edu/~anat550/hnanim/face/face.html] +synonym: "embryonic facial process" RELATED [] +synonym: "facial primordium" RELATED [] +synonym: "primordium of face" RELATED [] +xref: FMA:293103 +xref: http://www.snomedbrowser.com/Codes/Details/89066004 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0012315 +name: incisive foramen +def: "The point where the primary palate and both palatine shelves fuse." [http://en.wikipedia.org/wiki/Incisive_foramen, https://missinglink.ucsf.edu/restricted/lm/CongenitalAnomalies/CleftLipPalate.html] +synonym: "foramina incisiva" RELATED [http://en.wikipedia.org/wiki/Incisive_foramen] +synonym: "foramina incisivum" EXACT LATIN [FMA:75305, FMA:TA] +synonym: "incisive foramina" RELATED [http://en.wikipedia.org/wiki/Incisive_foramen] +synonym: "incisive fossa" RELATED [http://en.wikipedia.org/wiki/Incisive_foramen] +synonym: "nasopalatine foramen" EXACT [FMA:75305] +synonym: "Stenson's foramen" EXACT [FMA:75305] +xref: FMA:75305 +xref: Incisive:foramen +is_a: UBERON:0013685 ! foramen of skull +relationship: adjacent_to UBERON:0005619 ! secondary palatal shelf +relationship: adjacent_to UBERON:0005620 ! primary palate + +[Term] +id: UBERON:0012316 +name: primitive palate +def: "Roof of the buccal cavity, formed from the fusion of vomer, pterygoid, parasphenoid, palatine, ectopterygoid." [ISBN:0073040584] +synonym: "palate" RELATED [ZFA:0005509] +xref: AAO:0010535 +xref: Primitive:palate +xref: TAO:0002093 +xref: ZFA:0005509 +is_a: UBERON:0007375 ! roof of mouth +relationship: has_fused_element UBERON:0001682 ! palatine bone +relationship: has_fused_element UBERON:0002396 ! vomer +relationship: has_fused_element UBERON:0004745 ! parasphenoid +relationship: has_fused_element UBERON:0010389 ! pterygoid bone +relationship: has_fused_element UBERON:0011634 ! ectopterygoid bone +relationship: part_of UBERON:0012072 {notes="palatal series", source="ISBN:0073040584"} ! palatal part of dermatocranium + +[Term] +id: UBERON:0012317 +name: vagina orifice +def: "The median slit located inferior and posterior to the external urethral orifice in the female; the exit for menstrual flow and birth and the entrance for the penis during sexual intercourse; the size and appearance of the vaginal orifice varies inversely with that of the hymen (G. membrane), a thin fold of mucous membrane that surrounds the vaginal orifice" [MGI:anna, MGI:csmith, MP:0001142] +subset: pheno_slim +synonym: "introitus" BROAD [FMA:19984] +synonym: "introitus" RELATED INCONSISTENT [FMA:19984] +synonym: "introitus of vagina" RELATED [MP:0001142] +synonym: "opening of vagina" EXACT [] +synonym: "orifice of vagina" EXACT [FMA:19984] +synonym: "ostium vaginae" EXACT [FMA:TA] +synonym: "vagina opening" EXACT [MP:0001142] +synonym: "vaginal introitus" RELATED [] +synonym: "vaginal orifice" EXACT [FMA:19984] +xref: EMAPA:37983 {source="MA:th"} +xref: FMA:19984 +xref: Vaginal:orifice +is_a: UBERON:0000161 ! orifice +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0000161 ! orifice +intersection_of: part_of UBERON:0000996 ! vagina +relationship: contributes_to_morphology_of UBERON:0000996 ! vagina +relationship: part_of UBERON:0000996 ! vagina + +[Term] +id: UBERON:0012318 +name: anterior ethmoidal artery +def: "The anterior ethmoidal artery, also anterior ethmoid artery is an artery of the head. Once branching from the ophthalmic artery, it accompanies the nasociliary nerve through the anterior ethmoidal canal to supply the anterior and middle ethmoidal cells, frontal sinus, and anterosuperior aspect of the lateral nasal wall[WP]" [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] +synonym: "a. ethmoidalis anterior" EXACT LATIN [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] +synonym: "anterior ethmoid artery" RELATED [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] +synonym: "anterior meningeal arteries" RELATED [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] +synonym: "anterior meningeal artery" RELATED [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] +synonym: "arteria ethmoidalis anterior" EXACT LATIN [http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery] +xref: FMA:49986 +xref: http://en.wikipedia.org/wiki/Anterior_ethmoidal_artery +xref: http://www.snomedbrowser.com/Codes/Details/312160004 +is_a: UBERON:0005193 ! ethmoidal artery +disjoint_from: UBERON:0012319 {source="lexical"} ! posterior ethmoidal artery + +[Term] +id: UBERON:0012319 +name: posterior ethmoidal artery +def: "The posterior ethmoidal artery is an artery of the head. It is smaller than the anterior ethmoidal artery, branches off from the ophthalmic artery when it reaches the medial wall of the orbit." [http://en.wikipedia.org/wiki/Posterior_ethmoidal_artery] +synonym: "a. ethmoidalis posterior" EXACT LATIN [http://en.wikipedia.org/wiki/Posterior_ethmoidal_artery] +synonym: "arteria ethmoidalis posterior" EXACT LATIN [http://en.wikipedia.org/wiki/Posterior_ethmoidal_artery] +synonym: "posterior ethmoidal vessel" RELATED [http://en.wikipedia.org/wiki/Posterior_ethmoidal_artery] +xref: FMA:49989 +xref: http://en.wikipedia.org/wiki/Posterior_ethmoidal_artery +xref: http://www.snomedbrowser.com/Codes/Details/312161000 +is_a: UBERON:0005193 ! ethmoidal artery + +[Term] +id: UBERON:0012320 +name: cervical artery +def: "An artery of the neck" [https://orcid.org/0000-0002-6601-2165] +xref: EMAPA:37075 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1707349 +xref: NCIT:C52850 +xref: UMLS:C1707349 {source="ncithesaurus:Cervical_Artery"} +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003502 ! neck blood vessel +intersection_of: UBERON:0001637 ! artery +intersection_of: part_of UBERON:0000974 ! neck + +[Term] +id: UBERON:0012321 +name: deep cervical artery +def: "The deep cervical artery (Profunda cervicalis) is an artery of the neck." [http://en.wikipedia.org/wiki/Deep_cervical_artery] +synonym: "profunda cervicalis" RELATED [http://en.wikipedia.org/wiki/Deep_cervical_artery] +xref: FMA:10659 +xref: http://en.wikipedia.org/wiki/Deep_cervical_artery +xref: http://www.snomedbrowser.com/Codes/Details/244223002 +is_a: UBERON:0012320 ! cervical artery +intersection_of: UBERON:0012320 ! cervical artery +intersection_of: part_of UBERON:0035551 ! deep vasculature +relationship: branching_part_of UBERON:0004688 {source="FMA"} ! costo-cervical trunk +relationship: part_of UBERON:0004688 ! costo-cervical trunk +relationship: part_of UBERON:0035551 ! deep vasculature + +[Term] +id: UBERON:0012322 +name: ascending cervical artery +def: "The ascending cervical artery is a small branch which arises from the inferior thyroid artery as that vessel is passing behind the carotid sheath; it runs up on the anterior tubercles of the transverse processes of the cervical vertebrC& in the interval between the Scalenus anterior and Longus capitis. To the muscles of the neck it gives twigs which anastomose with branches of the vertebral, and it sends one or two spinal branches into the vertebral canal through the intervertebral foramina to be distributed to the medulla spinalis and its membranes, and to the bodies of the vertebrC&, in the same manner as the spinal branches from the vertebral. It anastomoses with the ascending pharyngeal and occipital arteries." [http://en.wikipedia.org/wiki/Ascending_cervical_artery] +synonym: "ascending cervical" RELATED [http://en.wikipedia.org/wiki/Ascending_cervical_artery] +xref: FMA:52489 +xref: http://en.wikipedia.org/wiki/Ascending_cervical_artery +xref: http://www.snomedbrowser.com/Codes/Details/161846001 +is_a: UBERON:0012320 ! cervical artery +relationship: branching_part_of UBERON:0007149 {source="FMA", source="Wikipedia"} ! inferior thyroid artery +relationship: part_of UBERON:0007149 ! inferior thyroid artery + +[Term] +id: UBERON:0012324 +name: transverse cervical artery +def: "The transverse cervical artery (transverse artery of neck, transversa colli artery) is a branch of the thyrocervical trunk, running at a higher level than the suprascapular artery." [http://en.wikipedia.org/wiki/Transverse_cervical_artery] +synonym: "cervical artery" RELATED [http://en.wikipedia.org/wiki/Transverse_cervical_artery] +synonym: "cervical artery" RELATED [MA:0001936] +synonym: "cervical transverse artery" RELATED [http://en.wikipedia.org/wiki/Transverse_cervical_artery] +synonym: "descending branch of the transverse cervical" RELATED [http://en.wikipedia.org/wiki/Transverse_cervical_artery] +synonym: "transversalis artery colli" RELATED [http://en.wikipedia.org/wiki/Transverse_cervical_artery] +synonym: "transversalis colli artery" RELATED [http://en.wikipedia.org/wiki/Transverse_cervical_artery] +synonym: "transverse cervical" RELATED [http://en.wikipedia.org/wiki/Transverse_cervical_artery] +synonym: "transverse cervical vessels" RELATED [http://en.wikipedia.org/wiki/Transverse_cervical_artery] +xref: FMA:10664 +xref: http://en.wikipedia.org/wiki/Transverse_cervical_artery +xref: http://www.snomedbrowser.com/Codes/Details/244224008 +xref: MA:0001936 +is_a: UBERON:0012320 ! cervical artery + +[Term] +id: UBERON:0012325 +name: retrocerebral complex +def: "Corpora allata with Corpora cardiaca form the retrocerebral complex, a neurosecretory organ." [BTO:0001803] +comment: will be ceded to arthropod anatomy ontology +xref: BTO:0001803 +xref: FBbt:00001718 +is_a: UBERON:0002368 {source="BTO"} ! endocrine gland + +[Term] +id: UBERON:0012326 +name: gubernacular bulb +def: "The caudal, swollen portion of the gubernaculum." [http://orcid.org/0000-0002-6601-2165, ISBN:0123971756] +synonym: "bulb of gubernaculum" NARROW [] +synonym: "pars infravaginalis gubernaculi" NARROW [http://www.ncbi.nlm.nih.gov/pubmed/11997885] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0008843 ! gubernaculum testis + +[Term] +id: UBERON:0012327 +name: pearly penile papule +def: "small saliences on the ridge of the glans of the male genital organs." [http://en.wikipedia.org/wiki/Hirsuties_coronae_glandis] +synonym: "hirsuties coronae glandis" EXACT PLURAL [http://en.wikipedia.org/wiki/Hirsuties_coronae_glandis] +synonym: "hirsutoid papilloma" EXACT [http://en.wikipedia.org/wiki/Hirsuties_coronae_glandis] +synonym: "preputial gland of penis" RELATED INCONSISTENT [FMA:19653] +xref: FMA:19653 +xref: http://en.wikipedia.org/wiki/Hirsuties_coronae_glandis +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0001332 {source="FMA"} ! prepuce of penis +relationship: present_in_taxon NCBITaxon:9606 {source="Preputial:gland"} + +[Term] +id: UBERON:0012328 +name: penile spine +def: "Keratinized structures along the glans and/or shaft of their penis that may be involved in sexual selection." [http://en.wikipedia.org/wiki/Penile_spines] +synonym: "penis spike" RELATED [] +synonym: "penis spine" RELATED [] +xref: Penile:spines +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0000989 ! penis +relationship: present_in_taxon NCBITaxon:40674 + +[Term] +id: UBERON:0012329 +name: keratinized stratified squamous epithelium +def: "Keratinized stratified squamous epithelium is a stratified squamous epithelium, the cells of which synthesize and accumulate keratin." [FMA:45568, http://en.wikipedia.org/wiki/Stratified_squamous_epithelium#Keratinized] +synonym: "epithelium stratificatum squamosum cornificatum" EXACT LATIN [FMA:45568] +xref: FMA:45568 +xref: Keratinized +is_a: UBERON:0006915 ! stratified squamous epithelium + +[Term] +id: UBERON:0012330 +name: nasal-associated lymphoid tissue +def: "The lymphocytic cell population present in the mucosa of the nasopharyngeal duct of some animals." [ncithesaurus:Nasal-Associated_Lymphoid_Tissue] +synonym: "NALT" EXACT ABBREVIATION [http://en.wikipedia.org/wiki/Mucosa-associated_lymphoid_tissue#Categorisation] +synonym: "naso-pharyngeal lymphoid tissue" EXACT [FMA:79771] +xref: FMA:79771 +xref: http://linkedlifedata.com/resource/umls/id/C2698431 +xref: MA:0003030 +xref: NCIT:C77659 +xref: UMLS:C2698431 {source="ncithesaurus:Nasal-Associated_Lymphoid_Tissue"} +is_a: UBERON:0001962 ! gut-associated lymphoid tissue +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0001961 ! mucosa-associated lymphoid tissue +intersection_of: part_of UBERON:0001728 ! nasopharynx +relationship: part_of UBERON:0001728 ! nasopharynx + +[Term] +id: UBERON:0012331 +name: mesosalpinx +def: "The mesosalpinx is part of the lining of the abdominal cavity in higher vertebrates, specifically the portion of the broad ligament that stretches from the uterine tube to the level of the ovary." [http://en.wikipedia.org/wiki/Mesosalpinx] +xref: FMA:19808 +xref: http://en.wikipedia.org/wiki/Mesosalpinx +xref: http://www.snomedbrowser.com/Codes/Details/279900000 +is_a: UBERON:0002095 ! mesentery +relationship: part_of UBERON:0012332 ! broad ligament of uterus + +[Term] +id: UBERON:0012332 +name: broad ligament of uterus +def: "A broad fold of peritoneum that extends from the side of the uterus to the wall of the pelvis." [http://en.wikipedia.org/wiki/Broad_ligament_of_the_uterus, MESH:A02.513.170] +synonym: "broad ligament" RELATED [MESH:A02.513.170] +synonym: "broad uterine ligament" EXACT [FMA:16516] +synonym: "ligamentum latum uteri" RELATED LATIN [] +xref: FMA:16516 +xref: http://en.wikipedia.org/wiki/Broad_ligament_of_the_uterus +xref: http://linkedlifedata.com/resource/umls/id/C0006205 +xref: http://www.snomedbrowser.com/Codes/Details/362723009 +xref: MESH:D001956 +xref: NCIT:C12318 +xref: UMLS:C0006205 {source="ncithesaurus:Broad_Ligament"} +is_a: UBERON:0000211 {source="MESH"} ! ligament +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: connects UBERON:0000459 ! uterine wall +relationship: connects UBERON:0002355 ! pelvic region of trunk +relationship: part_of UBERON:0002095 ! mesentery + +[Term] +id: UBERON:0012333 +name: ovarian bursa +def: "A pouch formed by the mesosalpinx and the mesovarium that encloses the infundibulum of the uterine tube and the ovary" [http://medical-dictionary.thefreedictionary.com/ovarian] +comment: Ovaries of some animals are surrounded by a thin membranous sac, the bursa, and are isolated from the peritoneal cavity. The bursa is continuous with the orifice of the oviduct. The bursa is not continuous in other mammals (eg., farm animals and human beings); ovaries of these species can be exposed within the abdomen, and thus ectopic pregnancy is possible[http://www.uwyo.edu/wjm/repro/femanat.htm] +subset: pheno_slim +xref: http://www.snomedbrowser.com/Codes/Details/250080006 +xref: MA:0003036 +is_a: UBERON:0034696 ! fold of peritoneum + +[Term] +id: UBERON:0012334 +name: navicular bursa +def: "A fluid-filled sac that lies between the navicular bone and the deep digital flexor muscle" [http://medical-dictionary.thefreedictionary.com/navicular+bursa] +synonym: "bursa podotrochlearis" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/370660009 +is_a: UBERON:0003668 ! synovial bursa +relationship: part_of UBERON:0002470 ! autopod region + +[Term] +id: UBERON:0012335 +name: navicular bursa of manus +def: "A navicular bursa that is part of a manus." [OBOL:automatic] +synonym: "bursa podotrochlearis manus" EXACT [http://medical-dictionary.thefreedictionary.com/bursa+podotrochlearis+manus] +synonym: "navicular bursa of forelimb" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/370736002 +is_a: UBERON:0012334 ! navicular bursa +intersection_of: UBERON:0012334 ! navicular bursa +intersection_of: part_of UBERON:0002398 ! manus +relationship: part_of UBERON:0002398 ! manus + +[Term] +id: UBERON:0012336 +name: perianal skin +def: "A zone of skin that is part of the area surrounding the anus." [http://orcid.org/0000-0002-6601-2165] +synonym: "skin of perianal area" EXACT [] +xref: EMAPA:37715 {source="MA:th"} +xref: FMA:29350 +xref: http://www.snomedbrowser.com/Codes/Details/181522009 +xref: MA:0003046 +is_a: UBERON:0001415 ! skin of pelvis +relationship: surrounds UBERON:0001245 ! anus + +[Term] +id: UBERON:0012337 +name: cauda equina +def: "The cauda equina is a structure within the lower end of the spinal column of most vertebrates, that consists of nerve roots and rootlets from above. The space in which the cerebrospinal fluid is present is actually an extension of the subarachnoid space." [http://en.wikipedia.org/wiki/Cauda_equina] +synonym: "filum terminale" RELATED [MESH:A08.800.800.720.725.150] +xref: Cauda:equina +xref: EMAPA:37468 {source="MA:th"} +xref: FMA:52590 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1626 +xref: http://linkedlifedata.com/resource/umls/id/C0007458 +xref: http://www.snomedbrowser.com/Codes/Details/263377004 +xref: MA:0003045 +xref: MESH:D002420 +xref: NCIT:C12689 +xref: UMLS:C0007458 {source="ncithesaurus:Cauda_Equina"} +is_a: UBERON:0005162 ! multi cell part structure +relationship: part_of UBERON:0009623 {source="MESH"} ! spinal nerve root + +[Term] +id: UBERON:0012343 +name: navicular bursa of pes +def: "A navicular bursa that is part of a pes." [OBOL:automatic] +synonym: "bursa podotrochlearis pes" EXACT [] +synonym: "navicular bursa of hindlimb" EXACT [] +is_a: UBERON:0012334 ! navicular bursa +intersection_of: UBERON:0012334 ! navicular bursa +intersection_of: part_of UBERON:0002387 ! pes +relationship: part_of UBERON:0002387 ! pes + +[Term] +id: UBERON:0012344 +name: holocrine gland +def: "any exocrine gland whose secretion consists of its own disintegrated secretory cells along with its secretory product; holocrine secretions are produced in the cytoplasm of the cell and released by the rupture of the plasma membrane, which destroys the cell and results in the secretion of the product into the lumen." [MP:0013543] +subset: pheno_slim +xref: BTO:0002325 +xref: http://en.wikipedia.org/wiki/Holocrine +xref: MA:0003042 +is_a: UBERON:0002365 {source="MA", source="MP"} ! exocrine gland + +[Term] +id: UBERON:0012348 +name: autopod pad +def: "pigmented, keratinised, hairless epidermis covering subcutaneous, collagenous, and adipose tissue." [http://en.wikipedia.org/wiki/Paw#Common_characteristics, https://orcid.org/0000-0002-6601-2165] +synonym: "paw pad" RELATED [] +is_a: UBERON:0015790 ! autopod skin + +[Term] +id: UBERON:0012349 +name: digital pad +def: "A thick spongy structure at the base of the autopod, centred over the flexor surfaces of the distal interphalangeal joints." [MURDOCH:611] +comment: May be fused +synonym: "acropodial pad" EXACT [] +synonym: "acropodium pad" EXACT [] +synonym: "digital cushion" RELATED [] +synonym: "digital pads" RELATED PLURAL [] +synonym: "interdigital pad" EXACT [] +is_a: UBERON:0012348 ! autopod pad +intersection_of: UBERON:0012348 ! autopod pad +intersection_of: part_of UBERON:0012354 ! acropodium region +relationship: part_of UBERON:0012354 ! acropodium region + +[Term] +id: UBERON:0012350 +name: carpal pad +def: "An autopod pad found in the carpal region of a manus. Used for additional traction when stopping or descending a slope in digitigrade species." [https://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0001518 ! skin of wrist +is_a: UBERON:0013622 ! manual autopod pad +intersection_of: UBERON:0012348 ! autopod pad +intersection_of: part_of UBERON:0004452 ! carpal region + +[Term] +id: UBERON:0012351 +name: urachal lumen +def: "A anatomical space that is enclosed by a urachus." [OBOL:automatic] +synonym: "urachus lumen" EXACT [] +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0002068 ! urachus +relationship: luminal_space_of UBERON:0002068 ! urachus +relationship: part_of UBERON:0002068 ! urachus + +[Term] +id: UBERON:0012352 +name: mesangial matrix +def: "Extracellular matrix secreted by intraglomerular mesangial cells" [MP:0011338] +subset: pheno_slim +synonym: "extracellular mesangial matrix" EXACT [MP:0011338] +xref: EMAPA:37907 {source="MA:th"} +is_a: UBERON:0000463 ! organism substance +relationship: part_of UBERON:0002319 ! mesangium +relationship: produced_by UBERON:0002320 ! glomerular mesangium + +[Term] +id: UBERON:0012353 +name: fin skeleton +def: "Skeletal subdivision consisting of all the skeletal elements in a single fin." [https://orcid.org/0000-0002-6601-2165] +synonym: "skeleton of fin" EXACT [] +is_a: UBERON:0010912 ! subdivision of skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0008897 ! fin +relationship: part_of UBERON:0008897 ! fin +relationship: skeleton_of UBERON:0008897 ! fin + +[Term] +id: UBERON:0012354 +name: acropodium region +def: "The segment of the autopod that is distal to the metapodial region and consists of the digits." [https://orcid.org/0000-0002-6601-2165] +synonym: "acropodial limb segment" EXACT [] +synonym: "acropodial region" EXACT [] +synonym: "acropodial segment of autopod" EXACT [] +synonym: "set of digits" EXACT [] +is_a: UBERON:0012139 ! segment of autopod +intersection_of: UBERON:0012139 ! segment of autopod +intersection_of: has_skeleton UBERON:0010543 ! acropodial skeleton +relationship: distal_to UBERON:0009877 ! metapodium region +relationship: has_skeleton UBERON:0010543 ! acropodial skeleton +relationship: part_of UBERON:0012140 ! digitopodium region + +[Term] +id: UBERON:0012355 +name: manual acropodium region +def: "The segment of the manus that is distal to the metacarpal region and consists of the manual digits (fingers)." [https://orcid.org/0000-0002-6601-2165] +synonym: "acropodial hindlimb segment" EXACT [] +synonym: "acropodial region of manus" EXACT [] +synonym: "acropodial segment of manus" EXACT [] +synonym: "all fingers" EXACT [] +synonym: "anterior acropodium" RELATED [] +synonym: "anterior acropodium region" EXACT [] +synonym: "anterior acropodium segment of limb" EXACT [] +synonym: "digiti manus" EXACT [FMA:TA] +synonym: "digits of hand" EXACT [FMA:75592] +synonym: "fingers including thumb" EXACT [FMA:75592] +synonym: "fingers set" EXACT [FMA:75592] +synonym: "manual acropodium" RELATED [] +synonym: "manual acropodium region" EXACT [] +synonym: "manual acropodium segment of limb" EXACT [] +synonym: "set of digits of hand" EXACT [FMA:75592] +synonym: "set of fingers" EXACT [FMA:75592] +xref: FMA:75592 +is_a: UBERON:0005451 ! segment of manus +is_a: UBERON:0012354 ! acropodium region +intersection_of: UBERON:0012354 ! acropodium region +intersection_of: part_of UBERON:0002398 ! manus +relationship: has_skeleton UBERON:0010688 ! skeleton of manual acropodium +relationship: part_of UBERON:0012141 ! manual digitopodium region + +[Term] +id: UBERON:0012356 +name: pedal acropodium region +def: "The segment of the pes that is distal to the metatarsal region and consists of the pedal digits (toes)." [https://orcid.org/0000-0002-6601-2165] +synonym: "acropodial forelimb segment" EXACT [] +synonym: "acropodial region of pes" EXACT [] +synonym: "acropodial segment of pes" EXACT [] +synonym: "all toes" EXACT [] +synonym: "digits of foot" EXACT [FMA:70664] +synonym: "pedal acropodium region" EXACT [] +synonym: "set of toes" EXACT [FMA:70664] +synonym: "toes" RELATED [FMA:70664] +synonym: "toes set" EXACT [FMA:70664] +xref: FMA:70664 +xref: http://www.snomedbrowser.com/Codes/Details/362835004 +is_a: UBERON:0005445 ! segment of pes +is_a: UBERON:0012354 ! acropodium region +intersection_of: UBERON:0012354 ! acropodium region +intersection_of: part_of UBERON:0002387 ! pes +relationship: has_skeleton UBERON:0010696 ! skeleton of pedal acropodium +relationship: part_of UBERON:0012142 ! pedal digitopodium region + +[Term] +id: UBERON:0012357 +name: digitopodium bone +def: "A bone that is part of a the digitopodium skeleton - i.e. the acropodial skeleton or the metapodial skeleton." [https://orcid.org/0000-0002-6601-2165] +synonym: "digit bone" RELATED COMPARATIVE_PREFERRED [] +is_a: UBERON:0011250 ! autopod bone +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0012140 ! digitopodium region +relationship: implements_design_pattern https://github.com/obophenotype/uberon/wiki/Skeleton-partonomy-Design-Pattern +relationship: part_of UBERON:0012150 ! skeleton of digitopodium + +[Term] +id: UBERON:0012358 +name: manual digitopodium bone +def: "A bone that is part of a the manual digitopodium skeleton - i.e. the fingers or the metacarpal skeleton." [https://orcid.org/0000-0002-6601-2165] +synonym: "bone of forelimb digitopodium" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/265809008 +is_a: UBERON:0005897 ! manus bone +is_a: UBERON:0012357 ! digitopodium bone +intersection_of: UBERON:0012357 ! digitopodium bone +intersection_of: part_of UBERON:0002398 ! manus +relationship: implements_design_pattern https://github.com/obophenotype/uberon/wiki/Skeleton-partonomy-Design-Pattern +relationship: part_of UBERON:0012151 ! skeleton of manual digitopodium + +[Term] +id: UBERON:0012359 +name: pedal digitopodium bone +def: "A bone that is part of a the pedal digitopodium skeleton - i.e. the toes or the metatarsal skeleton." [https://orcid.org/0000-0002-6601-2165] +synonym: "bone of hindlimb digitopodium" EXACT [] +is_a: UBERON:0005899 ! pes bone +is_a: UBERON:0012357 ! digitopodium bone +intersection_of: UBERON:0012357 ! digitopodium bone +intersection_of: part_of UBERON:0002387 ! pes +relationship: implements_design_pattern https://github.com/obophenotype/uberon/wiki/Skeleton-partonomy-Design-Pattern +relationship: part_of UBERON:0012152 ! skeleton of pedal digitopodium + +[Term] +id: UBERON:0012360 +name: bone of jaw +def: "A bone element that is part of a jaw region." [OBOL:automatic] +synonym: "jaw bone" EXACT [] +xref: EMAPA:35453 +xref: http://www.snomedbrowser.com/Codes/Details/369003004 +xref: MA:0003130 +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0013765 ! digestive system element +intersection_of: UBERON:0001474 ! bone element +intersection_of: part_of UBERON:0011595 ! jaw region +relationship: part_of UBERON:0001708 ! jaw skeleton + +[Term] +id: UBERON:0012361 +name: internal anal region +xref: EHDAA2:0004588 +is_a: UBERON:0000481 ! multi-tissue structure +relationship: part_of UBERON:0001353 {source="EHDAA2"} ! anal region + +[Term] +id: UBERON:0012363 +name: thyroid follicle epithelium +def: "A epithelium that is part of a thyroid follicle." [OBOL:automatic] +synonym: "epithelium of thyroid follicle" EXACT [FMA:68783] +synonym: "thryoid epithelium" BROAD [] +synonym: "thyroid follicle epithelium" EXACT [FMA:68783] +synonym: "wall of thyroid follicle" EXACT [FMA:68783] +xref: FMA:68783 +is_a: UBERON:0000484 {source="FMA"} ! simple cuboidal epithelium +is_a: UBERON:0005911 ! endo-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0005305 ! thyroid follicle +relationship: develops_from UBERON:0007689 ! thyroid diverticulum +relationship: part_of UBERON:0005305 ! thyroid follicle +relationship: present_in_taxon NCBITaxon:7955 {notes="As in mammals, the thyroid follicles of the zebrafish are usually round to oval, with low cuboidal epithelium. In contrast to mammals, the follicles are not concentrated together but are diffusely distributed along the ventral aorta.", source="https://doi.org/10.1177/0192623311409597"} + +[Term] +id: UBERON:0012364 +name: colloid of thyroid follicle +def: "portion of substance contained within the thyroid follicle lumen. Contains prohormone thyroglobulin." [https://orcid.org/0000-0002-6601-2165] +synonym: "thyroid colloid" EXACT [FMA:68831] +synonym: "thyroid follicle colloid" EXACT [FMA:68831] +xref: FMA:68831 +is_a: UBERON:0000463 {source="FMA"} ! organism substance +relationship: located_in UBERON:0012246 ! thyroid follicular lumen +relationship: part_of UBERON:0005305 ! thyroid follicle + +[Term] +id: UBERON:0012367 +name: muscle layer of intestine +def: "A muscle layer that is part of an intestine." [OBOL:automatic] +synonym: "intestinal muscularis propria" EXACT [FMA:15697] +synonym: "muscularis externa of intestine" EXACT [FMA:15697] +synonym: "smooth muscle of intestine" RELATED [] +xref: FMA:15697 +is_a: UBERON:0018261 ! muscular coat of digestive tract +intersection_of: UBERON:0006660 ! muscular coat +intersection_of: part_of UBERON:0000160 ! intestine +relationship: part_of UBERON:0001262 {source="FMA"} ! wall of intestine + +[Term] +id: UBERON:0012368 +name: circular muscle layer of muscular coat +def: "The inner layer of the muscular coat." [BTO:0005213] +synonym: "circular muscle layer" RELATED [] +synonym: "circular smooth muscle" RELATED [BTO:0005213] +synonym: "inner muscularis" RELATED [FMA:62899] +synonym: "inner muscularis layer" RELATED [FMA:62899] +xref: BTO:0005213 +xref: FMA:62899 +is_a: UBERON:0034933 ! layer of smooth muscle tissue +relationship: part_of UBERON:0006660 ! muscular coat + +[Term] +id: UBERON:0012369 +name: longitudinal muscle layer of muscular coat +def: "The outer layer of the muscular coat." [BTO:0005214] +synonym: "longitudinal muscle layer" RELATED [] +synonym: "longitudinal smooth muscle" RELATED [BTO:0005214] +synonym: "outer muscularis" RELATED [FMA:62900] +synonym: "outer muscularis layer" RELATED [FMA:62900] +xref: BTO:0005214 +xref: FMA:62900 +is_a: UBERON:0034933 ! layer of smooth muscle tissue +relationship: part_of UBERON:0006660 ! muscular coat + +[Term] +id: UBERON:0012373 +name: sympathetic nerve plexus +def: "A nerve plexus that is part of a sympathetic nervous system." [OBOL:automatic] +xref: EMAPA:37617 {source="MA:th"} +xref: MA:0001160 +is_a: UBERON:0001816 ! autonomic nerve plexus +intersection_of: UBERON:0001810 ! nerve plexus +intersection_of: part_of UBERON:0000013 ! sympathetic nervous system +relationship: part_of UBERON:0000013 ! sympathetic nervous system + +[Term] +id: UBERON:0012374 +name: subserosal plexus +def: "The subserous part of the enteric plexus of autonomic nerves" [http://medical-dictionary.thefreedictionary.com/subserous+plexus] +synonym: "subserous nerve plexus" EXACT [FMA:77598] +synonym: "subserous plexus" EXACT [FMA:77598] +synonym: "tela subserosa" EXACT [] +xref: FMA:77598 +xref: http://www.snomedbrowser.com/Codes/Details/110699000 +xref: Tela:subserosa +is_a: UBERON:0000429 ! enteric plexus +relationship: part_of UBERON:0012375 ! subserosa + +[Term] +id: UBERON:0012375 +name: subserosa +def: "A layer of tissue between the muscularis and serosa." [http://en.wikipedia.org/wiki/Subserosa] +comment: Contains nerves, blood vessels, lymphatics and lymph nodes +xref: FMA:45636 +xref: http://en.wikipedia.org/wiki/Subserosa +xref: http://linkedlifedata.com/resource/umls/id/C0225334 +xref: http://www.snomedbrowser.com/Codes/Details/2255006 +xref: NCIT:C94494 +xref: UMLS:C0225334 {source="ncithesaurus:Subserosa"} +is_a: UBERON:0004923 ! organ component layer +intersection_of: UBERON:0004923 ! organ component layer +intersection_of: adjacent_to UBERON:0000042 ! serous membrane +intersection_of: composed_primarily_of UBERON:0006815 ! areolar connective tissue +relationship: adjacent_to UBERON:0000042 ! serous membrane +relationship: composed_primarily_of UBERON:0006815 ! areolar connective tissue + +[Term] +id: UBERON:0012376 +name: retromolar triangle +def: "The small area behind the wisdom teeth" [http://en.wikipedia.org/wiki/Retromolar_space, ncithesaurus:Retromolar_Trigone] +synonym: "retromolar pad" RELATED [] +synonym: "retromolar trigone" RELATED [] +xref: CALOHA:TS-2353 +xref: FMA:75784 +xref: http://linkedlifedata.com/resource/umls/id/C0226920 +xref: http://www.snomedbrowser.com/Codes/Details/245830008 +xref: NCIT:C54223 +xref: UMLS:C0226920 {source="ncithesaurus:Retromolar_Trigone"} +is_a: UBERON:0000479 ! tissue +relationship: part_of UBERON:0001828 ! gingiva + +[Term] +id: UBERON:0012377 +name: muscle layer of jejunum +def: "A muscular coat that is part of a jejunum." [OBOL:automatic] +synonym: "jejunal smooth muscle" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "muscularis externa of jejunum" EXACT [FMA:14951] +synonym: "muscularis propria of jejunum" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "smooth muscle of jejunum" RELATED [https://orcid.org/0000-0002-6601-2165] +xref: FMA:14951 +is_a: UBERON:0011201 ! muscle layer of small intestine +intersection_of: UBERON:0006660 ! muscular coat +intersection_of: part_of UBERON:0002115 ! jejunum +relationship: part_of UBERON:0002115 ! jejunum + +[Term] +id: UBERON:0012378 +name: muscle layer of urinary bladder +def: "A muscular coat that is part of a urinary bladder." [OBOL:automatic] +synonym: "bladder muscular coat" EXACT [] +synonym: "muscle layer of urinary bladder" EXACT [FMA:15930] +synonym: "muscular coat of bladder" EXACT [FMA:15930] +synonym: "muscular coat of urinary bladder" EXACT [FMA:15930] +synonym: "muscular layer of bladder" EXACT [FMA:15930] +synonym: "muscular layer of urinary bladder" EXACT [FMA:15930] +synonym: "tunica musculari vesicae" EXACT [FMA:TA] +synonym: "tunica muscularis (vesica urinaria)" EXACT [FMA:TA] +xref: FMA:15930 +xref: http://linkedlifedata.com/resource/umls/id/C1288327 +xref: NCIT:C32206 +xref: UMLS:C1288327 {source="ncithesaurus:Bladder_Muscular_Coat"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0006660 ! muscular coat +intersection_of: UBERON:0006660 ! muscular coat +intersection_of: part_of UBERON:0001255 ! urinary bladder +relationship: has_part UBERON:0004228 ! urinary bladder smooth muscle +relationship: part_of UBERON:0001256 {source="FMA"} ! wall of urinary bladder + +[Term] +id: UBERON:0012398 +name: large intestine smooth muscle circular layer +def: "A circular muscle layer of muscular coat that is part of a large intestine smooth muscle." [OBOL:automatic] +synonym: "circular muscle layer of segment of large intestine" RELATED [FMA:81160] +xref: EMAPA:37558 {source="MA:th"} +xref: FMA:81160 +xref: MA:0001548 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0012368 ! circular muscle layer of muscular coat +intersection_of: UBERON:0012368 ! circular muscle layer of muscular coat +intersection_of: part_of UBERON:0004220 ! large intestine smooth muscle +relationship: part_of UBERON:0004220 ! large intestine smooth muscle + +[Term] +id: UBERON:0012399 +name: large intestine smooth muscle longitudinal layer +def: "A longitudinal muscle layer of muscular coat that is part of a large intestine smooth muscle." [OBOL:automatic] +synonym: "longitudinal muscle layer of zone of large intestine" RELATED [FMA:63637] +xref: EMAPA:37559 {source="MA:th"} +xref: FMA:63637 +xref: MA:0001549 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0012369 ! longitudinal muscle layer of muscular coat +intersection_of: UBERON:0012369 ! longitudinal muscle layer of muscular coat +intersection_of: part_of UBERON:0004220 ! large intestine smooth muscle +relationship: part_of UBERON:0004220 ! large intestine smooth muscle + +[Term] +id: UBERON:0012401 +name: small intestine smooth muscle circular layer +def: "A circular muscle layer of muscular coat that is part of a small intestine smooth muscle." [OBOL:automatic] +synonym: "circular layer of small intestine muscularis propria" EXACT [FMA:14935] +synonym: "circular muscle coat of small intestine" EXACT [FMA:14935] +synonym: "circular muscle layer of small intestine" EXACT [FMA:14935] +synonym: "circular muscle of small intestine" EXACT [FMA:14935] +synonym: "short pitch helicoidal muscle layer of small intestine" EXACT [FMA:14935] +synonym: "stratum circulare (tunica muscularis)(intestinum tenue)" EXACT [FMA:14935] +synonym: "stratum circulare tunicae muscularis intestini tenuis" EXACT LATIN [FMA:14935, FMA:TA] +synonym: "stratum helicoidale brevis gradus tunicae muscularis intestini tenuis" EXACT [FMA:TA] +xref: EMAPA:37562 {source="MA:th"} +xref: FMA:14935 +xref: http://www.snomedbrowser.com/Codes/Details/54658003 +xref: MA:0001560 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0012368 ! circular muscle layer of muscular coat +intersection_of: UBERON:0012368 ! circular muscle layer of muscular coat +intersection_of: part_of UBERON:0004239 ! small intestine smooth muscle +relationship: part_of UBERON:0004239 ! small intestine smooth muscle +relationship: part_of UBERON:0011201 {source="FMA"} ! muscle layer of small intestine + +[Term] +id: UBERON:0012402 +name: small intestine smooth muscle longitudinal layer +def: "A longitudinal muscle layer of muscular coat that is part of a small intestine smooth muscle." [OBOL:automatic] +synonym: "long pitch helicoidal muscle layer of small intestine" EXACT [FMA:14936] +synonym: "longitudinal layer of small intestine muscularis propria" EXACT [FMA:14936] +synonym: "longitudinal muscle coat of small intestine" EXACT [FMA:14936] +synonym: "longitudinal muscle layer of small intestine" EXACT [FMA:14936] +synonym: "longitudinal muscle of small intestine" EXACT [FMA:14936] +synonym: "stratum helicoidale longi gradus tunicae muscularis intestini tenuis" EXACT [FMA:TA] +synonym: "stratum longitudinale (tunica muscularis) (intestinum tenue)" EXACT [FMA:14936] +synonym: "stratum longitudinale tunicae muscularis intestini tenuis" EXACT LATIN [FMA:14936, FMA:TA] +xref: EMAPA:37563 {source="MA:th"} +xref: FMA:14936 +xref: http://www.snomedbrowser.com/Codes/Details/59150006 +xref: MA:0001561 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0012369 ! longitudinal muscle layer of muscular coat +intersection_of: UBERON:0012369 ! longitudinal muscle layer of muscular coat +intersection_of: part_of UBERON:0004239 ! small intestine smooth muscle +relationship: part_of UBERON:0004239 ! small intestine smooth muscle +relationship: part_of UBERON:0011201 {source="FMA"} ! muscle layer of small intestine + +[Term] +id: UBERON:0012416 +name: respiratory system arterial smooth muscle +xref: EMAPA:37567 {source="MA:th"} +xref: MA:0001802 +is_a: UBERON:0004297 ! respiratory system blood vessel smooth muscle +is_a: UBERON:0004695 ! arterial system smooth muscle +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0003643 ! respiratory system arterial blood vessel +relationship: part_of UBERON:0003643 ! respiratory system arterial blood vessel + +[Term] +id: UBERON:0012418 +name: respiratory system venous smooth muscle +def: "A smooth muscle tissue that is part of a respiratory system venous blood vessel." [OBOL:automatic] +xref: EMAPA:37586 {source="MA:th"} +xref: MA:0001812 +is_a: UBERON:0004696 ! venous system smooth muscle +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0003476 ! respiratory system venous blood vessel +relationship: part_of UBERON:0003476 ! respiratory system venous blood vessel + +[Term] +id: UBERON:0012419 +name: taenia coli +def: "The taeniae coli (also teniae coli) are three separate longitudinal ribbons of smooth muscle on the outside of the ascending, transverse, descending and sigmoid colons. They are visible, and can be seen just below the serosa or fibrosa. They are the Mesocolic, Free and Omental Coli. The teniae coli contracts length wise to produce the haustra, the bulges in the colon. The bands converge at the root of the vermiform appendix and the rectum. These bands correspond to the outer layer of the muscularis externa, in other portions of the digestive tract." [http://en.wikipedia.org/wiki/Taenia_coli] +synonym: "longitudinal band of large intestine muscularis" EXACT [FMA:15041] +synonym: "longitudinal bands" RELATED [http://en.wikipedia.org/wiki/Taenia_coli] +synonym: "taeniae coli" RELATED [http://en.wikipedia.org/wiki/Taenia_coli] +synonym: "tenia coli" RELATED [http://en.wikipedia.org/wiki/Taenia_coli] +synonym: "teniae coli" RELATED [http://en.wikipedia.org/wiki/Taenia_coli] +xref: FMA:15041 +xref: http://www.snomedbrowser.com/Codes/Details/362160001 +xref: Taenia:coli +is_a: UBERON:0034933 ! layer of smooth muscle tissue +relationship: part_of UBERON:0011198 {source="FMA"} ! muscle layer of large intestine + +[Term] +id: UBERON:0012420 +name: coprodeum +def: "Most proximal cloacal compartment, into which the large intestine empties[Kardong]" [ISBN:0073040584] +synonym: "cloacal coprodeum" EXACT [] +synonym: "coprodaeum" EXACT [] +synonym: "coprodeal portion of cloaca" EXACT [] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0000162 ! cloaca +relationship: proximalmost_part_of UBERON:0000162 ! cloaca + +[Term] +id: UBERON:0012421 +name: urodeum +def: "Cloacal compartment into which the urogenital system empties[Kardong]" [ISBN:0073040584] +synonym: "cloacal urodeum" EXACT [] +synonym: "urodaeum" EXACT [] +synonym: "urodeal portion of cloaca" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/81191004 +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0000162 ! cloaca + +[Term] +id: UBERON:0012422 +name: secretion of crop +def: "Nutritional fluid secreted by the crop in some species[Kardong]" [ISBN:0073040584] +synonym: "crop milk" RELATED [ISBN:0073040584] +is_a: UBERON:0000463 ! organism substance +intersection_of: UBERON:0000463 ! organism substance +intersection_of: produced_by UBERON:0007356 ! crop +relationship: produced_by UBERON:0007356 ! crop + +[Term] +id: UBERON:0012423 +name: layer of microvilli +def: "A layer of microvilli, Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments[GO,modified]" [GO:0005902, http://en.wikipedia.org/wiki/Microvillus] +synonym: "microvilli" RELATED [MESH:A11.284.180.565] +synonym: "microvillus" RELATED [FMA:67296] +xref: FMA:67296 +xref: http://en.wikipedia.org/wiki/Microvillus +xref: http://linkedlifedata.com/resource/umls/id/C0026049 +xref: MESH:D008871 +xref: NCIT:C33112 +xref: UMLS:C0026049 {source="ncithesaurus:Microvillus"} +is_a: UBERON:0005162 ! multi cell part structure + +[Term] +id: UBERON:0012424 +name: brush border layer +def: "The microvilli-covered surface of simple cuboidal epithelium and simple columnar epithelium cells found in certain locations of the body; mainly in the small an large intestines and kidneys." [http://en.wikipedia.org/wiki/Brush_border] +comment: Note - this anatomical structure differs from the cellular component GO_0005903 brush border (defined as: the dense covering of microvilli on the apical surface of a epithelial cells in tissues such as the intestine, kidney, and choroid plexus; the microvilli aid absorption by increasing the surface area of the cell). +synonym: "brush border" RELATED [FMA:70977] +synonym: "brush border membrane" RELATED [http://en.wikipedia.org/wiki/Brush_border] +xref: Brush:border +xref: FMA:70977 +is_a: UBERON:0012423 ! layer of microvilli +relationship: part_of UBERON:0000490 ! unilaminar epithelium + +[Term] +id: UBERON:0012425 +name: striated border microvillus layer +def: "A microvillus layer that is striated and found in the intestine." [http://medical-dictionary.thefreedictionary.com/striated+border, http://orcid.org/0000-0002-6601-2165] +synonym: "striated border" RELATED [FMA:70978] +xref: FMA:70978 +xref: NCIT:C33634 +is_a: UBERON:0012423 ! layer of microvilli +relationship: part_of UBERON:0000160 ! intestine + +[Term] +id: UBERON:0012426 +name: short microvillus layer +def: "A layer of microvilli covering lymphocytes." [http://orcid.org/0000-0002-6601-2165] +synonym: "short microvillus" RELATED [FMA:70979] +xref: FMA:70979 +is_a: UBERON:0012423 ! layer of microvilli + +[Term] +id: UBERON:0012427 +name: intestinal brush border layer +def: "A brush border layer that is part of a intestine." [OBOL:automatic] +comment: Consider merging into UBERON:0012425 +synonym: "brush border microvillus layer of intestine" EXACT [] +synonym: "intestinal brush border" EXACT [] +is_a: UBERON:0012424 ! brush border layer +intersection_of: UBERON:0012424 ! brush border layer +intersection_of: part_of UBERON:0000160 ! intestine +relationship: part_of UBERON:0000160 ! intestine + +[Term] +id: UBERON:0012428 +name: proximal convoluted tubule brush border +def: "A brush border layer that is part of a proximal tubule in the kidney." [http://en.wikipedia.org/wiki/Microvillus#Function, http://orcid.org/0000-0002-6601-2165] +synonym: "kidney brush border layer" BROAD [] +synonym: "proximal tubule brush border layer" BROAD [] +is_a: UBERON:0012424 ! brush border layer +intersection_of: UBERON:0012424 ! brush border layer +intersection_of: part_of UBERON:0001287 ! proximal convoluted tubule +relationship: part_of UBERON:0001287 ! proximal convoluted tubule + +[Term] +id: UBERON:0012429 +name: hematopoietic tissue +def: "Blood-forming tissue, consisting of reticular fibers and cells." [http://encyclopedia2.thefreedictionary.com/hematopoietic+tissue] +synonym: "bone marrow tissue" NARROW [NCBITaxon:9606] +synonym: "haemopoietic tissue" EXACT [FMA:14073] +synonym: "hematopoietic tissue" EXACT [FMA:14073] +synonym: "hemopoietic tissue" EXACT [FMA:14073] +synonym: "textus haemopoieticus" EXACT [FMA:14073] +xref: CALOHA:TS-2142 +xref: FMA:14073 +xref: http://linkedlifedata.com/resource/umls/id/C0229619 +xref: NCIT:C13051 +xref: UMLS:C0229619 {source="ncithesaurus:Hematopoietic_Tissue"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0034769 {source="FMA"} ! lymphomyeloid tissue +relationship: part_of UBERON:0002390 {source="defitional"} ! hematopoietic system + +[Term] +id: UBERON:0012430 +name: tunica fibrosa of eyeball +def: "The sclera and cornea form the fibrous tunic of the bulb of the eye; the sclera is opaque, and constitutes the posterior five-sixths of the tunic; the cornea is transparent, and forms the anterior sixth." [http://en.wikipedia.org/wiki/Fibrous_tunic_of_eyeball] +synonym: "corneosclera" RELATED [http://en.wikipedia.org/wiki/Fibrous_tunic_of_eyeball] +synonym: "fibrous layer of eyeball" EXACT [FMA:58102] +synonym: "fibrous tunic" RELATED [http://en.wikipedia.org/wiki/Fibrous_tunic_of_eyeball] +synonym: "tunica fibrosa" BROAD [] +xref: FMA:58102 +xref: http://en.wikipedia.org/wiki/Fibrous_tunic_of_eyeball +xref: http://www.snomedbrowser.com/Codes/Details/361318005 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004923 {source="FMA"} ! organ component layer +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: has_part UBERON:0000964 ! cornea +relationship: has_part UBERON:0001773 ! sclera +relationship: part_of UBERON:0010230 ! eyeball of camera-type eye +relationship: present_in_taxon NCBITaxon:7955 {source="https://doi.org/10.1177/0192623311409597"} + +[Term] +id: UBERON:0012437 +name: epithelial-mesenchymal boundary +def: "A anatomical line that adjacent_to a epithelium and adjacent_to a mesenchyme." [OBOL:automatic] +is_a: UBERON:0006800 ! anatomical line +intersection_of: UBERON:0006800 ! anatomical line +intersection_of: adjacent_to UBERON:0000483 ! epithelium +intersection_of: adjacent_to UBERON:0003104 ! mesenchyme +relationship: adjacent_to UBERON:0000483 ! epithelium +relationship: adjacent_to UBERON:0003104 ! mesenchyme + +[Term] +id: UBERON:0012438 +name: blastema of regenerating fin/limb +def: "A blastema that is part of a regenerating fin/limb." [OBOL:automatic] +xref: ZFA:0001270 +is_a: UBERON:0005306 ! blastema +intersection_of: UBERON:0005306 ! blastema +intersection_of: part_of UBERON:2001269 ! regenerating fin/limb +relationship: part_of UBERON:2001269 ! regenerating fin/limb + +[Term] +id: UBERON:0012439 +name: blastema of regenerating digit tip +def: "A blastema that is part of a distal segment of digit." [OBOL:automatic] +synonym: "digit blastema" RELATED [] +is_a: UBERON:0005306 ! blastema +intersection_of: UBERON:0005306 ! blastema +intersection_of: part_of UBERON:0009551 ! distal segment of digit +relationship: part_of UBERON:0009551 ! distal segment of digit + +[Term] +id: UBERON:0012441 +name: endothelium of peritubular capillary +def: "A endothelium that is part of a peritubular capillary." [OBOL:automatic] +synonym: "peritubular capillary endothelium" EXACT [] +synonym: "peritubular endothelium" BROAD [] +is_a: UBERON:0001915 ! endothelium of capillary +is_a: UBERON:0004819 ! kidney epithelium +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0005272 ! peritubular capillary +relationship: part_of UBERON:0005272 ! peritubular capillary + +[Term] +id: UBERON:0012442 +name: epiploic foramen +def: "The passage of communication, or foramen, between the general cavity (of the abdomen), and the omental bursa." [http://en.wikipedia.org/wiki/Omental_foramen] +synonym: "aditus to lesser sac" EXACT [FMA:14711] +synonym: "epiploic foramen" RELATED [http://en.wikipedia.org/wiki/Omental_foramen] +synonym: "epiploic foramen of Winslow" EXACT [http://en.wikipedia.org/wiki/Omental_foramen] +synonym: "foramen epiploicum" RELATED [http://en.wikipedia.org/wiki/Omental_foramen] +synonym: "foramen of Winslow" EXACT [FMA:14711] +synonym: "foramen of winslow" RELATED [http://en.wikipedia.org/wiki/Omental_foramen] +synonym: "foramen omentale" EXACT [FMA:TA] +synonym: "foramen omentale (epiploicum)" EXACT [FMA:14711] +synonym: "omental foramen" EXACT [FMA:14711] +xref: EHDAA2:0000447 +xref: FMA:14711 +xref: http://www.snomedbrowser.com/Codes/Details/264473006 +xref: Omental:foramen +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0001179 ! peritoneal cavity + +[Term] +id: UBERON:0012443 +name: row of scales +synonym: "set of scales" RELATED [] +is_a: UBERON:0034926 ! anatomical row +intersection_of: UBERON:0034926 ! anatomical row +intersection_of: has_member UBERON:0002542 ! scale +relationship: has_member UBERON:0002542 ! scale + +[Term] +id: UBERON:0012444 +name: gastropege +def: "A single row of large ventral scales in snakes that aid locomotion." [http://en.wikivet.net] +synonym: "row of ventral scales" RELATED [] +is_a: UBERON:0012443 ! row of scales + +[Term] +id: UBERON:0012446 +name: obsolete cloacal spur +def: "retained pelvic vestiges found in birds. They are generally used in courtship and are more pronounced in males than females." [http://en.wikivet.net] +comment: Obsoleted as lacks support in literature +is_obsolete: true + +[Term] +id: UBERON:0012447 +name: podotheca +def: "A horny sheath covering the lower leg of some birds." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:3000981 ! limb external integument structure +relationship: has_part UBERON:0007381 ! epidermal scale +relationship: part_of UBERON:0001003 ! skin epidermis +relationship: part_of UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0012448 +name: Herbst's corpuscle +def: "The Corpuscles of Herbst or Herbst corpuscles are a nerve-ending similar to the Pacinian corpuscle, in the mucous membrane of the tongue, in pits on the beak and in other parts of the bodies of birds. It differs from the Pacinian corpuscle in being smaller, in its capsules being more closely approximated, and in that the axis-cylinder in the central clear space is coated with a continuous row of nuclei. In many wading birds, a large number of Herbst corpuscles are found embedded in pits on the mandibles that are believed to enable birds to sense prey under wet sand or soil." [http://en.wikipedia.org/wiki/Corpuscles_of_Herbst] +synonym: "corpuscles of Herbst" RELATED [http://en.wikipedia.org/wiki/Corpuscles_of_Herbst] +synonym: "Herbst corpuscle" RELATED [http://en.wikipedia.org/wiki/Corpuscles_of_Herbst] +xref: http://en.wikipedia.org/wiki/Corpuscles_of_Herbst +is_a: UBERON:0012449 {source="Wikipedia"} ! mechanoreceptor + +[Term] +id: UBERON:0012449 +name: mechanoreceptor +def: "A sensory receptor that responds to mechanical pressure or distortion." [http://en.wikipedia.org/wiki/Mechanoreceptor] +comment: Normally there are four main types in glabrous skin: Pacinian corpuscles, Meissner's corpuscles, Merkel's discs, and Ruffini endings. There are also mechanoreceptors in hairy skin, and the hair cells in the cochlea are the most sensitive mechanoreceptors, transducing air pressure waves into nerve signals sent to the brain. In the periodontal ligament, there are some mechanoreceptors, which allow the jaw to relax when biting down on hard objects; the mesencephalic nucleus is responsible for this reflex +xref: FMA:86587 +xref: http://en.wikipedia.org/wiki/Mechanoreceptor +xref: MESH:A08.800.550.700.500 +xref: NCIT:C13821 +is_a: UBERON:0012451 ! sensory receptor + +[Term] +id: UBERON:0012450 +name: Meissner's corpuscle +def: "A type of nerve ending in the skin that is responsible for sensitivity to light touch. In particular, they have highest sensitivity (lowest threshold) when sensing vibrations lower than 50 Hertz. They are rapidly adaptive receptors." [http://en.wikipedia.org/wiki/Meissner%27s_corpuscle] +comment: located in papillary layer of dermis in glabrous skin[ISBN:9780849388118] +synonym: "Dogiel's end bulb" RELATED [ISBN:9780849388118] +synonym: "meisner's corpuscle" RELATED [http://en.wikipedia.org/wiki/Meissner%27s_corpuscle] +synonym: "meissner corpuscle" RELATED [http://en.wikipedia.org/wiki/Meissner%27s_corpuscle] +synonym: "meissner corpuscle end-organ" RELATED [http://en.wikipedia.org/wiki/Meissner%27s_corpuscle] +synonym: "meissner's corpuscle" RELATED [http://en.wikipedia.org/wiki/Meissner%27s_corpuscle] +synonym: "meissner's corpuscles" RELATED [http://en.wikipedia.org/wiki/Meissner%27s_corpuscle] +synonym: "messier corpuscle" RELATED [http://en.wikipedia.org/wiki/Meissner%27s_corpuscle] +synonym: "messner's corpuscle" RELATED [http://en.wikipedia.org/wiki/Meissner%27s_corpuscle] +synonym: "Ruffini's end bulb" RELATED [ISBN:9780849388118] +synonym: "tactile corpuscles of Wagner and Meissner" RELATED [http://en.wikipedia.org/wiki/Meissner%27s_corpuscle] +xref: FMA:83605 +xref: http://linkedlifedata.com/resource/umls/id/C0205831 +xref: http://www.snomedbrowser.com/Codes/Details/41421000 +xref: Meissner%27s:corpuscle +xref: NCIT:C13171 +xref: UMLS:C0205831 {source="ncithesaurus:Meissner_Corpuscle"} +is_a: UBERON:0012449 {source="Wikipedia"} ! mechanoreceptor +relationship: part_of UBERON:0002199 ! integument + +[Term] +id: UBERON:0012451 +name: sensory receptor +def: "A sensory nerve ending that responds to a stimulus in the internal or external environment of an organism. In response to stimuli the sensory receptor initiates sensory transduction by creating graded potentials or action potentials in the same cell or in an adjacent one." [http://en.wikipedia.org/wiki/Sensory_receptor] +synonym: "peripheral ending of sensory neuron" EXACT [FMA:84650] +synonym: "sensory nerve ending" RELATED [MESH:A08.800.550.700] +xref: FMA:84650 +xref: http://linkedlifedata.com/resource/umls/id/C0682664 +xref: http://www.snomedbrowser.com/Codes/Details/70402007 +xref: MESH:A08.800.550.700 +xref: NCIT:C13819 +xref: Sensory:receptor +xref: UMLS:C0682664 {source="ncithesaurus:Somatosensory_Receptor"} +is_a: UBERON:0012453 ! nerve ending + +[Term] +id: UBERON:0012453 +name: nerve ending +def: "Specialized terminations of peripheral neurons. Nerve endings include NEUROEFFECTOR JUNCTION(s) by which neurons activate target organs and sensory receptors (see RECEPTORS, SENSORY) which transduce information from the various sensory modalities and send it centrally in the nervous system. Presynaptic nerve endings are PRESYNAPTIC TERMINALS." [MESH:A08.800.550] +synonym: "nerve ending" RELATED [MESH:A08.800.550] +xref: MESH:D009411 +is_a: UBERON:0005162 ! multi cell part structure +relationship: part_of UBERON:0001027 ! sensory nerve + +[Term] +id: UBERON:0012456 +name: Merkel nerve ending +def: "mechanoreceptors found in the skin and mucosa of vertebrates that provide touch information to the brain. The information they provide are those regarding pressure and texture. Each ending consists of a Merkel cell in close apposition with an enlarged nerve terminal" [http://en.wikipedia.org/wiki/Merkel_nerve_ending] +synonym: "Merkel's disc" EXACT [FMA:83606] +synonym: "Merkel's disk" EXACT [] +synonym: "Merkel's receptor" EXACT [] +synonym: "Merkel's tactile disc" EXACT [] +xref: FMA:83606 +xref: http://en.wikipedia.org/wiki/Merkel_nerve_ending +xref: http://www.snomedbrowser.com/Codes/Details/9317004 +xref: NIF_Subcellular:FMA_83606 +is_a: UBERON:0012449 ! mechanoreceptor + +[Term] +id: UBERON:0012457 +name: Ruffini nerve ending +def: "An encapsulated nerve receptor present in subpapillary dermis and deep dermis of hairy and glabrous skin." [http://en.wikipedia.org/wiki/Bulbous_corpuscle, ISBN:9780849388118] +synonym: "bulbous corpuscle" RELATED [http://en.wikipedia.org/wiki/Ruffini_ending] +synonym: "corpuscle of ruffini" RELATED [http://en.wikipedia.org/wiki/Ruffini_ending] +synonym: "corpusculum sensorium fusiforme" EXACT LATIN [http://en.wikipedia.org/wiki/Ruffini_ending] +synonym: "Ruffini corpuscle" RELATED [http://en.wikipedia.org/wiki/Ruffini_ending] +synonym: "Ruffini corpuscle end-organ" RELATED [http://en.wikipedia.org/wiki/Ruffini_ending] +synonym: "Ruffini corpuscles" RELATED [http://en.wikipedia.org/wiki/Ruffini_ending] +synonym: "Ruffini endings" RELATED [http://en.wikipedia.org/wiki/Ruffini_ending] +synonym: "Ruffini's corpuscle" EXACT [MP:0000989] +synonym: "Ruffini's corpuscles" RELATED [http://en.wikipedia.org/wiki/Ruffini_ending] +synonym: "Ruffini's end organ" RELATED [http://en.wikipedia.org/wiki/Ruffini_ending] +synonym: "Ruffini's ending" RELATED [http://en.wikipedia.org/wiki/Ruffini_ending] +synonym: "Ruffini's organs" RELATED [http://en.wikipedia.org/wiki/Ruffini_ending] +xref: Bulbous:corpuscle +xref: FMA:83602 +xref: FMA:84004 +xref: http://linkedlifedata.com/resource/umls/id/C0035943 +xref: http://www.snomedbrowser.com/Codes/Details/53140000 +xref: NCIT:C13175 +xref: UMLS:C0035943 {source="ncithesaurus:Ruffinis_Corpuscle"} +is_a: UBERON:0012449 {source="FMA"} ! mechanoreceptor +relationship: part_of UBERON:0002199 ! integument + +[Term] +id: UBERON:0012458 +name: antler velvet +def: "highly vascular skin called velvet that covers the antler whilst it grows, supplying oxygen and nutrients to the growing bone." [http://en.wikipedia.org/wiki/Velvet_(antler_covering)] +synonym: "velvet of antler" EXACT [] +xref: http://en.wikipedia.org/wiki/Velvet_(antler_covering) +xref: http://www.snomedbrowser.com/Codes/Details/47282002 +is_a: UBERON:0001084 ! skin of head +relationship: part_of UBERON:0006971 ! antler + +[Term] +id: UBERON:0012459 +name: antler pedicle +def: "Attachment point for antler on skull" [http://en.wikipedia.org/wiki/Antler#Occurrence_and_function, http://en.wikipedia.org/wiki/Pedicle_(cervidae)] +xref: Pedicle:(cervidae) +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0006971 ! antler + +[Term] +id: UBERON:0012462 +name: proctodeum portion of cloaca +def: "Most distal cloacal compartment; function is copulation and in some species develops a penis[Kardong]" [ISBN:0073040584] +synonym: "proctodeal wall of cloaca" RELATED [] +synonym: "proctodeum" RELATED INCONSISTENT [] +xref: http://www.snomedbrowser.com/Codes/Details/298233001 +is_a: UBERON:0000064 ! organ part +relationship: distalmost_part_of UBERON:0000162 ! cloaca +relationship: part_of UBERON:0000162 ! cloaca + +[Term] +id: UBERON:0012463 +name: cloacal lumen +def: "A anatomical space that is enclosed by a cloaca." [OBOL:automatic] +synonym: "cloaca lumen" EXACT [ZFA:0000330] +synonym: "cloacal chamber" EXACT [ZFA:0000330] +xref: TAO:0000330 +xref: ZFA:0000330 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0000162 ! cloaca +relationship: luminal_space_of UBERON:0000162 ! cloaca +relationship: part_of UBERON:0000162 ! cloaca +relationship: part_of UBERON:0012465 {source="cjm"} ! lumen of terminal part of digestive tract + +[Term] +id: UBERON:0012464 +name: cloacal vent +def: "The opening of the cloacal chamber to the outside of the organism. Birds maintain a single cloacal opening throughout their lives." [http://orcid.org/0000-0002-6601-2165] +synonym: "cloacal opening" EXACT [] +synonym: "cloacal orifice" RELATED [] +synonym: "vent" RELATED [] +is_a: UBERON:0000161 ! orifice +intersection_of: UBERON:0000161 ! orifice +intersection_of: part_of UBERON:0000162 ! cloaca +relationship: part_of UBERON:0000162 ! cloaca + +[Term] +id: UBERON:0012465 +name: lumen of terminal part of digestive tract +def: "A anatomical space that is enclosed by a terminal part of digestive tract." [OBOL:automatic] +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0006866 ! terminal part of digestive tract +relationship: luminal_space_of UBERON:0006866 ! terminal part of digestive tract +relationship: part_of UBERON:0006866 ! terminal part of digestive tract + +[Term] +id: UBERON:0012466 +name: extraembryonic cavity +synonym: "extraembryonic cavities" RELATED PLURAL [EHDAA2:0000472] +xref: EHDAA2:0000472 +xref: EMAPA:16054 +xref: VHOG:0000767 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: part_of UBERON:0016887 ! entire extraembryonic component +relationship: part_of UBERON:0016887 ! entire extraembryonic component + +[Term] +id: UBERON:0012467 +name: enclosed anatomical space +def: "An anatomical space with no opening to another space or to the exterior." [AEO:0000222] +synonym: "closed anatomical space" EXACT [] +xref: AEO:0000222 +is_a: UBERON:0000464 ! anatomical space + +[Term] +id: UBERON:0012468 +name: anal tooth +def: "Triangular calcified papillae (often five) placed radially around the anus of some Holothuriidae" [http://species-identification.org/species.php?species_group=nasc&selected=definitie&menuentry=woordenlijst&record=Anal%20teeth, https://orcid.org/0000-0002-6601-2165, https://www.karger.com/Article/Pdf/142845] +synonym: "anal teeth" EXACT PLURAL [] +synonym: "calcified anal papilla" RELATED [] +synonym: "cloacal tooth" RELATED [] +synonym: "perianal tooth" RELATED [] +is_a: UBERON:0003913 ! tooth-like structure +intersection_of: UBERON:0003913 ! tooth-like structure +intersection_of: part_of UBERON:0001353 ! anal region +relationship: part_of UBERON:0001353 ! anal region + +[Term] +id: UBERON:0012469 +name: external anal region +xref: EHDAA2:0004589 +is_a: UBERON:0000481 ! multi-tissue structure +relationship: part_of UBERON:0001353 {source="EHDAA2"} ! anal region + +[Term] +id: UBERON:0012470 +name: wheel papilla +comment: the terminal papillae superficially resemble the 'anal teeth' of non-apodid holothurians. +is_a: UBERON:0000061 ! anatomical structure + +[Term] +id: UBERON:0012471 +name: hepatogastric ligament +def: "Ligament extending between the liver and stomach" [http://en.wikipedia.org/wiki/Hepatogastric_ligament] +synonym: "gastro-hepatic ligament" EXACT [] +synonym: "gastrohepatic ligament" EXACT [FMA:16520] +synonym: "hepato-gastric ligament" EXACT [] +synonym: "ligamentum hepatogastricum" EXACT LATIN [http://en.wikipedia.org/wiki/Hepatogastric_ligament] +xref: FMA:16520 +xref: Hepatogastric:ligament +xref: http://linkedlifedata.com/resource/umls/id/C0230232 +xref: http://www.snomedbrowser.com/Codes/Details/260825001 +xref: NCIT:C32737 +xref: UMLS:C0230232 {source="ncithesaurus:Hepatogastric_Ligament"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005172 ! abdomen element +is_a: UBERON:0008845 ! nonskeletal ligament +is_a: UBERON:0013765 ! digestive system element +relationship: connects UBERON:0000945 ! stomach +relationship: connects UBERON:0002107 ! liver +relationship: develops_from UBERON:0005602 ! dorsal mesogastrium +relationship: part_of UBERON:0002399 {source="FMA"} ! lesser omentum + +[Term] +id: UBERON:0012472 +name: hepatoduodenal ligament +def: "The hepatoduodenal ligament is the portion of the lesser omentum extending between the porta hepatis of the liver and the superior part of the duodenum." [http://en.wikipedia.org/wiki/Hepatoduodenal_ligament] +synonym: "ligamentum hepatoduodenale" EXACT [http://en.wikipedia.org/wiki/Hepatoduodenal_ligament] +xref: FMA:16521 +xref: Hepatoduodenal:ligament +xref: http://www.snomedbrowser.com/Codes/Details/362706000 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005172 ! abdomen element +is_a: UBERON:0008845 ! nonskeletal ligament +is_a: UBERON:0013765 ! digestive system element +relationship: connects UBERON:0002107 ! liver +relationship: connects UBERON:0002114 ! duodenum +relationship: part_of UBERON:0002399 {source="FMA"} ! lesser omentum + +[Term] +id: UBERON:0012473 +name: oral cirrus +def: "Small tentacle-like structure surrounding the mouth; they act as sensory devices and as a filter for the water passing into the body" [http://en.wikipedia.org/wiki/Lancelet#Physical_features] +synonym: "buccal cilia" EXACT PLURAL [] +synonym: "buccal cillium" RELATED [] +synonym: "buccal cirri" EXACT PLURAL [] +synonym: "buccal cirrus" EXACT [] +synonym: "buccal tentacle" EXACT [] +synonym: "lophophore tentacle" NARROW [NCBITaxon:1206795] +synonym: "oral cilia" EXACT PLURAL [] +synonym: "oral cillium" RELATED [] +synonym: "oral cirri" EXACT PLURAL [] +synonym: "oral tentacle" EXACT [] +xref: BTO:0001357 +is_a: UBERON:0000062 ! organ +relationship: adjacent_to UBERON:0000165 ! mouth +relationship: present_in_taxon NCBITaxon:7568 +relationship: present_in_taxon NCBITaxon:7737 + +[Term] +id: UBERON:0012474 +name: hepatic cecum +def: "A ventral evagination extending anteriorly in the mid-portion of the intestine in Amphioxi." [BTO:0002855] +synonym: "hepatic caecum" EXACT [BTO:0002855] +xref: BTO:0002855 +is_a: UBERON:0009854 ! digestive tract diverticulum +relationship: part_of UBERON:0000160 {source="BTO"} ! intestine +relationship: present_in_taxon NCBITaxon:7737 + +[Term] +id: UBERON:0012475 +name: skeleton of pectoral complex +def: "The collection of all skeletal elements in a pectoral complex - i.e. the combination of free limb or fin plus pectoral girdle." [https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "bones of upper limb" RELATED [FMA:24139] +synonym: "ossa membri superioris" RELATED [FMA:TA] +synonym: "pectoral complex skeleton" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "set of bones of upper limb" RELATED [FMA:24139] +synonym: "skeleton of anterior limb/fin and girdle" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "upper limb skeleton" RELATED [FMA:24139] +xref: FMA:24139 +is_a: UBERON:0010912 ! subdivision of skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0010708 ! pectoral complex +relationship: part_of UBERON:0002091 ! appendicular skeleton +relationship: part_of UBERON:0010708 {source="FMA"} ! pectoral complex +relationship: skeleton_of UBERON:0010708 ! pectoral complex + +[Term] +id: UBERON:0012476 +name: skeleton of pelvic complex +def: "The collection of all skeletal elements in a pelvic complex - i.e. the combination of free limb or fin plus pelvic girdle." [https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "bones of lower limb" RELATED [FMA:24140] +synonym: "lower limb skeleton" RELATED [FMA:24140] +synonym: "ossa membri inferioris" RELATED [FMA:TA] +synonym: "pelvic complex skeleton" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "set of bones of lower limb" RELATED [FMA:24140] +synonym: "skeleton of posterior limb/fin and girdle" RELATED [https://orcid.org/0000-0002-6601-2165] +xref: FMA:24140 +is_a: UBERON:0010912 ! subdivision of skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0010709 ! pelvic complex +relationship: part_of UBERON:0002091 ! appendicular skeleton +relationship: part_of UBERON:0010709 {source="FMA"} ! pelvic complex +relationship: skeleton_of UBERON:0010709 ! pelvic complex + +[Term] +id: UBERON:0012477 +name: dorsal part of neck +def: "The posterior region of the neck, including the suboccipital region." [MP:0012723] +subset: pheno_slim +synonym: "back of neck" EXACT [FMA:24189] +synonym: "hindneck" RELATED [] +synonym: "nape" BROAD [BTO:0000957] +synonym: "nape of neck" EXACT [] +synonym: "neck back" EXACT [FMA:24189] +synonym: "nucha" EXACT [FMA:24189] +synonym: "nuchal region" EXACT [FMA:24189] +synonym: "posterior cervical region" EXACT [FMA:24189] +synonym: "posterior neck region" EXACT [FMA:24189] +synonym: "posterior part of neck" EXACT [FMA:24189] +synonym: "regio cervicalis posterior" EXACT [FMA:TA] +xref: BTO:0000957 +xref: FMA:24189 +xref: http://www.snomedbrowser.com/Codes/Details/182326009 +xref: http://www.snomedbrowser.com/Codes/Details/304036007 +is_a: UBERON:0005434 {source="FMA"} ! cervical region +relationship: in_dorsal_side_of UBERON:0000974 {source="FMA"} ! neck +relationship: part_of UBERON:0001137 {source="FMA"} ! dorsum + +[Term] +id: UBERON:0012478 +name: cloacal gland +def: "A gland that is part of a cloaca." [OBOL:automatic] +is_a: UBERON:0003408 ! gland of digestive tract +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0000162 ! cloaca +relationship: part_of UBERON:0000162 ! cloaca + +[Term] +id: UBERON:0012479 +name: urodeal gland +def: "A gland that is part of a urodeum." [OBOL:automatic] +synonym: "urodaeal gland" EXACT [] +is_a: UBERON:0012478 ! cloacal gland +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0012421 ! urodeum +relationship: part_of UBERON:0012421 ! urodeum + +[Term] +id: UBERON:0012480 +name: cloacal mucosa +alt_id: UBERON:0003349 +def: "A mucosa that is part of a cloaca [Automatically generated definition]." [OBOL:automatic] +synonym: "cloaca mucosa" EXACT [] +synonym: "cloaca mucosa of organ" EXACT [] +synonym: "cloaca mucous membrane" EXACT [] +synonym: "cloaca organ mucosa" EXACT [] +synonym: "cloacal mucous membrane" EXACT [] +synonym: "mucosa of cloaca" EXACT [] +synonym: "mucosa of organ of cloaca" EXACT [] +synonym: "mucous membrane of cloaca" EXACT [] +synonym: "organ mucosa of cloaca" EXACT [] +is_a: UBERON:0000344 ! mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0000162 ! cloaca +relationship: part_of UBERON:0000162 ! cloaca + +[Term] +id: UBERON:0012481 +name: cloacal epithelium +def: "An epithelium that is part of a cloaca." [http://orcid.org/0000-0002-6601-2165] +synonym: "cloacal endoderm" RELATED [EMAPA:27577] +xref: EMAPA:27577 +xref: EMAPA:36070 +xref: ZFA:0005783 +is_a: UBERON:0003929 ! digestive tract epithelium +is_a: UBERON:0005911 ! endo-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000162 ! cloaca +relationship: part_of UBERON:0000162 ! cloaca + +[Term] +id: UBERON:0012482 +name: submucosa of cloaca +def: "A submucosa that is part of a cloaca [Automatically generated definition]." [OBOL:automatic] +synonym: "cloaca submucosa" EXACT [] +synonym: "cloacal submucosa" EXACT [] +is_a: UBERON:0018257 ! submucosa of digestive tract +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0000162 ! cloaca +relationship: part_of UBERON:0000162 ! cloaca + +[Term] +id: UBERON:0012483 +name: serosa of cloaca +def: "A serous membrane that is part of a cloaca [Automatically generated definition]." [OBOL:automatic] +synonym: "cloaca serosa" EXACT [] +synonym: "cloaca serous membrane" EXACT [] +synonym: "cloacal serosa" EXACT [] +synonym: "serous membrane of cloaca" EXACT [] +synonym: "visceral peritoneum of cloaca" EXACT [] +is_a: UBERON:0000042 ! serous membrane +intersection_of: UBERON:0000042 ! serous membrane +intersection_of: part_of UBERON:0000162 ! cloaca +relationship: part_of UBERON:0000162 ! cloaca + +[Term] +id: UBERON:0012485 +name: cloacal villus +synonym: "cloacal villi" EXACT PLURAL [] +is_a: UBERON:0012423 ! layer of microvilli +intersection_of: UBERON:0012423 ! layer of microvilli +intersection_of: part_of UBERON:0000162 ! cloaca +relationship: part_of UBERON:0000162 ! cloaca + +[Term] +id: UBERON:0012486 +name: muscle layer of cloaca +def: "A muscular coat that is part of a cloaca." [OBOL:automatic] +synonym: "muscularis externa of cloaca" EXACT [] +synonym: "smooth muscle of cloaca" RELATED [] +is_a: UBERON:0018261 ! muscular coat of digestive tract +intersection_of: UBERON:0006660 ! muscular coat +intersection_of: part_of UBERON:0000162 ! cloaca +relationship: part_of UBERON:0000162 ! cloaca + +[Term] +id: UBERON:0012487 +name: vaginal sphincter +def: "A sphincter muscle that is part of a vagina." [OBOL:automatic] +synonym: "sphincter of vagina" EXACT [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004590 ! sphincter muscle +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0004590 ! sphincter muscle +intersection_of: part_of UBERON:0000996 ! vagina +relationship: part_of UBERON:0000996 ! vagina +relationship: present_in_taxon NCBITaxon:8509 + +[Term] +id: UBERON:0012488 +name: muscle layer of duodenum +def: "A muscular coat that is part of a duodenum." [OBOL:automatic] +synonym: "duodenal muscularis propria" EXACT [FMA:14944] +synonym: "muscularis externa of duodenum" EXACT [FMA:14944] +synonym: "muscularis propria of duodenum" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "smooth muscle of duodenum" RELATED [https://orcid.org/0000-0002-6601-2165] +xref: FMA:14944 +xref: http://www.snomedbrowser.com/Codes/Details/362147007 +is_a: UBERON:0011201 ! muscle layer of small intestine +intersection_of: UBERON:0006660 ! muscular coat +intersection_of: part_of UBERON:0002114 ! duodenum +relationship: part_of UBERON:0002114 ! duodenum + +[Term] +id: UBERON:0012489 +name: muscle layer of colon +def: "A muscular coat that is part of a colon." [OBOL:automatic] +synonym: "colon muscularis" RELATED [MA:0003198] +synonym: "colonic muscularis propria" EXACT [FMA:14986] +synonym: "muscular coat of colon" EXACT [FMA:14986] +synonym: "muscular layer of colon" EXACT [FMA:14986] +synonym: "muscularis externa of colon" EXACT [FMA:14986] +synonym: "tunica muscularis coli" EXACT [FMA:TA] +xref: EMAPA:27383 +xref: FMA:14986 +xref: http://www.snomedbrowser.com/Codes/Details/362158003 +xref: MA:0003198 +is_a: UBERON:0011198 ! muscle layer of large intestine +intersection_of: UBERON:0006660 ! muscular coat +intersection_of: part_of UBERON:0001155 ! colon +relationship: part_of UBERON:0001155 ! colon + +[Term] +id: UBERON:0012490 +name: muscle layer of anal canal +def: "A muscular coat that is part of a anal canal." [OBOL:automatic] +synonym: "anal canal muscularis propria" EXACT [] +synonym: "anal muscularis propria" EXACT [FMA:15708] +synonym: "muscular coat of anal canal" EXACT [] +synonym: "muscular layer of anal canal" EXACT [] +synonym: "muscularis externa of anal canal" EXACT [] +synonym: "muscularis propria of anal canal" EXACT [FMA:15708] +xref: FMA:15708 +xref: http://www.snomedbrowser.com/Codes/Details/362171000 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0011198 ! muscle layer of large intestine +intersection_of: UBERON:0006660 ! muscular coat +intersection_of: part_of UBERON:0000159 ! anal canal +relationship: part_of UBERON:0000159 ! anal canal + +[Term] +id: UBERON:0012494 +name: muscularis mucosae of duodenum +def: "A muscularis mucosa that is part of a duodenum." [OBOL:automatic] +synonym: "lamina muscularis of duodenal mucous membrane" EXACT [FMA:15059] +synonym: "lamina muscularis of duodenum" EXACT [] +xref: EMAPA:27243 +xref: EMAPA:27259 +xref: FMA:15059 +xref: http://www.snomedbrowser.com/Codes/Details/37457002 +xref: MA:0003210 +xref: MA:0003211 +is_a: UBERON:0001210 ! muscularis mucosae of small intestine +intersection_of: UBERON:0006676 ! muscularis mucosa +intersection_of: part_of UBERON:0002114 ! duodenum +relationship: part_of UBERON:0000320 {source="FMA"} ! duodenal mucosa + +[Term] +id: UBERON:0012497 +name: muscularis mucosae of rectum +def: "A muscularis mucosa that is part of a rectum." [OBOL:automatic] +synonym: "lamina muscularis of rectal mucosa" EXACT [FMA:15687] +synonym: "lamina muscularis of rectal mucous membrane" EXACT [FMA:15687] +xref: EMAPA:27093 +xref: FMA:15687 +xref: http://www.snomedbrowser.com/Codes/Details/53420003 +is_a: UBERON:0001239 ! muscularis mucosae of large intestine +is_a: UBERON:0018112 ! rectum smooth muscle tissue +intersection_of: UBERON:0006676 ! muscularis mucosa +intersection_of: part_of UBERON:0001052 ! rectum +relationship: part_of UBERON:0003346 {source="FMA"} ! mucosa of rectum + +[Term] +id: UBERON:0012498 +name: serosa of appendix +def: "A serous membrane that is part of a vermiform appendix." [OBOL:automatic] +synonym: "appendiceal serosa" EXACT [FMA:14997] +synonym: "appendix serosa" EXACT [FMA:14997] +synonym: "serosa of vermiform appendix" EXACT [FMA:14997] +synonym: "visceral peritoneum of vermiform appendix" EXACT [FMA:14997] +xref: FMA:14997 +xref: http://www.snomedbrowser.com/Codes/Details/22488003 +is_a: UBERON:0003335 ! serosa of colon +intersection_of: UBERON:0000042 ! serous membrane +intersection_of: part_of UBERON:0001154 ! vermiform appendix +relationship: part_of UBERON:0001154 ! vermiform appendix + +[Term] +id: UBERON:0012499 +name: serosa of uterine tube +def: "A serous membrane that is part of a fallopian tube." [OBOL:automatic] +synonym: "serosa of fallopian tube" EXACT [FMA:18316] +synonym: "serosa of oviduct" EXACT [FMA:18316] +synonym: "serous coat of uterine tube" EXACT [FMA:18316] +synonym: "tunica serosa (tuba uterina)" EXACT [FMA:18316] +synonym: "tunica serosa tubae uterinae" EXACT [FMA:TA] +synonym: "uterine tubal serosa" EXACT [FMA:18316] +synonym: "uterine tube serosa" EXACT [FMA:18316] +xref: FMA:18316 +xref: http://www.snomedbrowser.com/Codes/Details/259593000 +is_a: UBERON:0000042 ! serous membrane +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0000042 ! serous membrane +intersection_of: part_of UBERON:0003889 ! fallopian tube +relationship: part_of UBERON:0003889 ! fallopian tube + +[Term] +id: UBERON:0012503 +name: serosa of fundus of stomach +def: "A serous membrane that is part of a fundus of stomach." [OBOL:automatic] +synonym: "visceral peritoneum of fundus of stomach" EXACT [FMA:17073] +xref: EMAPA:27157 +xref: FMA:17073 +is_a: UBERON:0001201 ! serosa of stomach +intersection_of: UBERON:0000042 ! serous membrane +intersection_of: part_of UBERON:0001160 ! fundus of stomach +relationship: part_of UBERON:0001160 ! fundus of stomach + +[Term] +id: UBERON:0012504 +name: adventitia of esophagus +def: "A adventitia that is part of a esophagus." [OBOL:automatic] +synonym: "adventitia of oesophagus" EXACT [FMA:63006] +synonym: "adventitious layer of esophagus" EXACT [FMA:63006] +synonym: "esophageal adventitia" EXACT [FMA:63006] +synonym: "esophagus adventitia" EXACT [FMA:63006] +synonym: "tunica adventitia (esophagus)" EXACT [FMA:63006] +synonym: "tunica adventitia oesophageae" EXACT [FMA:TA] +xref: FMA:63006 +xref: http://www.snomedbrowser.com/Codes/Details/85950006 +is_a: UBERON:0005742 ! adventitia +intersection_of: UBERON:0005742 ! adventitia +intersection_of: part_of UBERON:0001043 ! esophagus +relationship: part_of UBERON:0001043 ! esophagus + +[Term] +id: UBERON:0012520 +name: forelimb epitrochlearis muscle +def: "The superficial-most muscle of the anterior surface of the arm is the epitrochlearis. It has no homolog in humans." [http://biology.clc.uc.edu] +synonym: "epitrochlearis" EXACT [BTO:0000423] +synonym: "wing epitrochlearis muscle" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +xref: BTO:0000423 +is_a: UBERON:0003662 {source="BTO"} ! forelimb muscle + +[Term] +id: UBERON:0012615 +name: umbilical smooth muscle +def: "A smooth muscle tissue that is part of a umbilical cord." [OBOL:automatic] +xref: BTO:0001847 +is_a: UBERON:0001135 ! smooth muscle tissue +is_a: UBERON:0005292 ! extraembryonic tissue +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0002331 ! umbilical cord +relationship: part_of UBERON:0002331 ! umbilical cord + +[Term] +id: UBERON:0012621 +name: muscle of Aristotle's lantern +def: "Any muscle organ that is part of a Aristotle's lantern." [OBOL:automatic] +synonym: "lantern muscle" EXACT [BTO:0001924] +xref: BTO:0001924 +is_a: UBERON:0001630 ! muscle organ +is_a: UBERON:0013765 ! digestive system element +intersection_of: UBERON:0001630 ! muscle organ +intersection_of: part_of UBERON:0008253 ! Aristotle's lantern +relationship: part_of UBERON:0008253 ! Aristotle's lantern + +[Term] +id: UBERON:0012641 +name: body of tubeworm +comment: to be ceded to polychaete ontology +xref: http://www.pbs.org/wgbh/nova/abyss/life/images/tubeworm.gif +is_a: UBERON:0000468 ! multicellular organism +relationship: produces UBERON:0012646 ! tubeworm tube + +[Term] +id: UBERON:0012642 +name: vestimentum muscle +def: "The vestimentum is a muscle that the tubeworm uses to anchro itself in the tube. Generates new tube material." [BTO:0002492, https://orcid.org/0000-0002-6601-2165] +synonym: "vestimentum" EXACT [BTO:0002492] +xref: BTO:0002492 +is_a: UBERON:0001630 ! muscle organ +relationship: part_of UBERON:0012641 ! body of tubeworm + +[Term] +id: UBERON:0012643 +name: plume +def: "Vascularized tip of their free end of a tubeworm which is an organ for exchanging compounds with the environment." [http://en.wikipedia.org/wiki/Giant_tube_worm#Body_structure] +xref: Body_structure +xref: BTO:0002480 +is_a: UBERON:0000062 ! organ +relationship: part_of UBERON:0012641 ! body of tubeworm + +[Term] +id: UBERON:0012644 +name: trophosome +def: "An organ of dark green-brown spongy tissue in a tubeworm which is a host to symbiotic microbes" [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0000062 ! organ +relationship: part_of UBERON:0012641 ! body of tubeworm + +[Term] +id: UBERON:0012645 +name: opisthosome +def: "Organ at the distal end of a tubeworm. Helps anchor the tubeworm" [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0000062 ! organ +relationship: part_of UBERON:0012641 ! body of tubeworm + +[Term] +id: UBERON:0012646 +name: tubeworm tube +comment: Tube consists of chitin proteoglycan/protein complex +is_a: UBERON:0000062 ! organ +relationship: part_of UBERON:0012641 ! body of tubeworm + +[Term] +id: UBERON:0012648 +name: ampulla of uterine tube +def: "The ampulla is the second portion of the uterine tube. It is an intermediate dilated portion, which curves over the ovary. It is the most common site of human fertilization. The word ampulla is from the Latin for flask." [http://en.wikipedia.org/wiki/Ampulla_of_uterine_tube] +synonym: "ampulla of fallopian tube" EXACT [FMA:18305] +synonym: "ampulla of fallopian tube" RELATED [http://en.wikipedia.org/wiki/Ampulla_of_uterine_tube] +synonym: "ampulla of oviduct" EXACT [FMA:18305] +synonym: "ampulla of the fallopian tube" RELATED [http://en.wikipedia.org/wiki/Ampulla_of_uterine_tube] +synonym: "ampulla of uterine tube" RELATED [BTO:0004285] +synonym: "ampulla tubae uterinae" EXACT LATIN [FMA:18305, FMA:TA] +synonym: "uterine tube ampulla" EXACT [FMA:18305] +xref: BTO:0004285 +xref: FMA:18305 +xref: http://en.wikipedia.org/wiki/Ampulla_of_uterine_tube +xref: http://www.snomedbrowser.com/Codes/Details/245497001 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0003889 {source="FMA"} ! fallopian tube + +[Term] +id: UBERON:0012649 +name: anococcygeus muscle +def: "One of a pair of thin sheets of smooth muscle inserting on the rectum, having a tendinous origin largely on sacral vertebrae." [http://www.ncbi.nlm.nih.gov/pubmed/9071980] +synonym: "AcM" RELATED ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/9071980] +synonym: "anococcygeus" EXACT [MA:0001533] +xref: BTO:0005150 +xref: EMAPA:37396 {source="MA:th"} +xref: MA:0001533 +is_a: UBERON:0004231 {source="MA"} ! anal region smooth muscle +relationship: attaches_to UBERON:0001052 ! rectum +relationship: attaches_to UBERON:0001094 ! sacral vertebra + +[Term] +id: UBERON:0012650 +name: gastroduodenal junction +def: "A anatomical junction that connects a stomach and connects a duodenum." [OBOL:automatic] +xref: FMA:17046 +xref: http://www.snomedbrowser.com/Codes/Details/264014000 +is_a: UBERON:1100000 ! digestive tract junction +intersection_of: UBERON:0007651 ! anatomical junction +intersection_of: connects UBERON:0000945 ! stomach +intersection_of: connects UBERON:0002114 ! duodenum +relationship: connects UBERON:0000945 ! stomach +relationship: connects UBERON:0002114 ! duodenum +relationship: part_of UBERON:0000945 ! stomach + +[Term] +id: UBERON:0012651 +name: mucosa of gastroduodenal junction +def: "A mucosa that is part of a gastroduodenal junction." [OBOL:automatic] +synonym: "gastroduodenal mucosa" EXACT [BTO:0005415] +xref: BTO:0005415 +is_a: UBERON:0001199 ! mucosa of stomach +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0012650 ! gastroduodenal junction +relationship: part_of UBERON:0012650 ! gastroduodenal junction + +[Term] +id: UBERON:0012652 +name: colorectum +def: "The subdivision of the digestive tract that consists of the colon and the rectum." [http://orcid.org/0000-0002-6601-2165] +xref: BTO:0001613 +xref: CALOHA:TS-1298 +xref: http://linkedlifedata.com/resource/umls/id/C1711309 +xref: NCIT:C54189 +xref: UMLS:C1711309 {source="ncithesaurus:Colorectal_Region"} +is_a: UBERON:0004921 {order="non-canonical", source="cjm"} ! subdivision of digestive tract +relationship: has_part UBERON:0001052 ! rectum +relationship: has_part UBERON:0001155 ! colon +relationship: part_of UBERON:0000059 ! large intestine + +[Term] +id: UBERON:0012925 +name: bronchial bud +xref: BTO:0001641 +is_a: UBERON:0005153 {source="GO:0060441"} ! epithelial bud +is_a: UBERON:0005911 ! endo-epithelium +relationship: develops_from UBERON:0005597 ! lung primordium + +[Term] +id: UBERON:0013067 +name: colorectal mucosa +alt_id: UBERON:0019041 +def: "A mucosa that is part of a colorectum." [OBOL:automatic] +xref: BTO:0002435 +is_a: UBERON:0001207 ! mucosa of large intestine +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0012652 ! colorectum +relationship: part_of UBERON:0012652 ! colorectum + +[Term] +id: UBERON:0013068 +name: palatine torus +def: "A bony protuberance sometimes found on the hard palate at the junction of the intermaxillary suture and the transverse palatine suture." [http://palaeos.com/vertebrates/glossary/glossaryP.html] +synonym: "crista palatina" RELATED [FMA:59201] +synonym: "torus palatinus" EXACT LATIN [http://palaeos.com/vertebrates/glossary/glossaryP.html] +xref: FMA:59201 +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0001682 ! palatine bone + +[Term] +id: UBERON:0013069 +name: popliteal area +def: "A depression on the ventral side of the femur, at the knee joint, between the condyles." [http://orcid.org/0000-0002-6601-2165] +synonym: "knee pit" RELATED [http://en.wikipedia.org/wiki/Popliteal_fossa] +synonym: "popliteal fossa" EXACT [FMA:22525] +synonym: "popliteal region" RELATED [] +synonym: "popliteal space" RELATED [] +xref: FMA:22525 +xref: http://palaeos.com/vertebrates/glossary/images/popliteal.gif +xref: http://www.snomedbrowser.com/Codes/Details/362791002 +xref: NCIT:C103222 +xref: Popliteal:fossa +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +relationship: part_of UBERON:0000981 ! femur + +[Term] +id: UBERON:0013070 +name: prepatagium +def: "A roughly triangular flap of skin on the wing of a bird or pterosaur which fills the space bounded by the humerus and ulna." [http://palaeos.com/vertebrates/glossary/glossaryPo.html] +is_a: UBERON:0010858 ! inter limb-segment region +relationship: part_of UBERON:0010856 ! patagium + +[Term] +id: UBERON:0013073 +name: rattle +def: "." [http://en.wikipedia.org/wiki/Rattlesnake#Rattle] +comment: The rattle is composed of a series of hollow, interlocked segments made of keratin, which are created by modifying the scales that cover the tip of the tail. +synonym: "snake rattle" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/10734004 +xref: Rattle +is_a: UBERON:0004529 ! anatomical projection +relationship: part_of UBERON:0007812 ! post-anal tail + +[Term] +id: UBERON:0013074 +name: cornual diverticulum +def: "An extension of the frontal sinus into the horn" [http://cal.vet.upenn.edu/projects/grossanat/largemenu/rheadsinlr.htm] +synonym: "cornual sinus" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/53994006 +is_a: UBERON:0002553 ! anatomical cavity +intersection_of: UBERON:0002553 ! anatomical cavity +intersection_of: luminal_space_of UBERON:0006967 ! horn +intersection_of: part_of UBERON:0001760 ! frontal sinus +relationship: luminal_space_of UBERON:0006967 ! horn +relationship: part_of UBERON:0001760 ! frontal sinus +relationship: part_of UBERON:0006967 ! horn + +[Term] +id: UBERON:0013075 +name: venom gland duct +def: "A duct that is part of a venom gland." [OBOL:automatic] +synonym: "duct of venom gland" EXACT [] +synonym: "venom duct" RELATED [BTO:0001855] +xref: BTO:0001855 +xref: http://www.snomedbrowser.com/Codes/Details/38124005 +is_a: UBERON:0000058 ! duct +intersection_of: UBERON:0000058 ! duct +intersection_of: part_of UBERON:0011579 ! venom gland +relationship: part_of UBERON:0011579 ! venom gland + +[Term] +id: UBERON:0013076 +name: snake venom +def: "Solutions or mixtures of toxic and nontoxic substances elaborated by snake (Ophidia) salivary glands for the purpose of killing prey or disabling predators and delivered by grooved or hollow fangs. They usually contain enzymes, toxins, and other factors." [http://en.wikipedia.org/wiki/Snake_venom, MESH:D24.185.965.850] +synonym: "venenosalivary venom" RELATED [] +xref: MESH:D24.185.965.850 +xref: Snake:venom +is_a: UBERON:0007113 ! venom +intersection_of: UBERON:0007113 ! venom +intersection_of: produced_by UBERON:0008976 ! snake venom gland +relationship: produced_by UBERON:0008976 ! snake venom gland + +[Term] +id: UBERON:0013078 +name: venom-injecting tooth +def: "A fang that is used to inject venom into prey, through either a tube or a groove" [https://orcid.org/0000-0002-6601-2165] +synonym: "fang" RELATED [] +synonym: "grooved fang" RELATED [] +synonym: "tubular fang" RELATED [] +synonym: "tubular tooth" RELATED [] +is_a: UBERON:0001091 ! calcareous tooth + +[Term] +id: UBERON:0013106 +name: elapid venom +def: "Venoms from snakes of the family Elapidae, including cobras, kraits, mambas, coral, tiger, and Australian snakes. The venoms contain polypeptide toxins of various kinds, cytolytic, hemolytic, and neurotoxic factors, but fewer enzymes than viper or crotalid venoms. Many of the toxins have been characterized." [MESH:D24.185.965.850.325] +synonym: "elapid venom" RELATED [MESH:D24.185.965.850.325] +xref: MESH:D24.185.965.850.325 +is_a: UBERON:0013076 {source="MESH"} ! snake venom + +[Term] +id: UBERON:0013110 +name: hydrophid venom +def: "Venoms of sea snakes, Hydrophiinae, found around Pacific islands. The venoms contain fewer enzymes and more neuro- or myotoxins than land snakes. The neurotoxic proteins are similar to elapid small, short, or type I neurotoxins, some of which have been characterized." [MESH:D24.185.965.850.480] +synonym: "hydrophid venom" RELATED [MESH:D24.185.965.850.480] +synonym: "sea snake venom" RELATED [MESH:D24.185.965.850.480] +xref: MESH:D24.185.965.850.480 +is_a: UBERON:0013076 {source="MESH"} ! snake venom + +[Term] +id: UBERON:0013112 +name: viper venom +def: "Venoms from snakes of the viperid family. They tend to be less toxic than elapid or hydrophid venoms and act mainly on the vascular system, interfering with coagulation and capillary membrane integrity and are highly cytotoxic. They contain large amounts of several enzymes, other factors, and some toxins." [MESH:D24.185.965.850.960] +synonym: "cerastes venom" RELATED [MESH:D24.185.965.850.960] +synonym: "egyptian sand viper venom" RELATED [MESH:D24.185.965.850.960] +synonym: "viper venom" RELATED [MESH:D24.185.965.850.960] +synonym: "viperotoxin" RELATED [MESH:D24.185.965.850.960] +xref: MESH:D24.185.965.850.960 +is_a: UBERON:0013076 {source="MESH"} ! snake venom + +[Term] +id: UBERON:0013113 +name: angular/surangular bone +def: "Bone formed from the fusion of angular and surangular bones. Found in snakes" [ISBN:0073040584] +is_a: UBERON:0008907 ! dermal bone +relationship: has_fused_element UBERON:0011079 ! angular bone +relationship: has_fused_element UBERON:0011636 ! surangular bone +relationship: part_of UBERON:0003113 ! dermatocranium + +[Term] +id: UBERON:0013114 +name: compressor glandulae muscle +def: "A prominent compressor muscle found in poisonous snakes that originates in the lower jaw, sweeps around the venom gland, and inserted on the gland's surface. The muscles acts to squeeze the gland and release venom." [ISBN:0073040584] +comment: only found in crotaline snakes, and has a spotty distribution within that group +is_a: UBERON:0001630 ! muscle organ +relationship: attaches_to UBERON:0004768 ! bone of lower jaw +relationship: attaches_to UBERON:0008976 ! snake venom gland +relationship: part_of UBERON:0013116 ! venom gland musculature + +[Term] +id: UBERON:0013115 +name: pterygoideus glandulae muscle +is_a: UBERON:0001630 ! muscle organ +relationship: part_of UBERON:0013116 ! venom gland musculature + +[Term] +id: UBERON:0013116 +name: venom gland musculature +is_a: UBERON:0008229 ! craniocervical region musculature +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0013118 +name: sulcus of brain +def: "A depression or fissure in the surface of the brain. It surrounds the gyri, creating the characteristic appearance of the brain in humans and other large mammals." [http://en.wikipedia.org/wiki/Sulcus_(neuroanatomy), https://github.com/obophenotype/uberon/issues/315] +subset: cumbo +synonym: "cerebral sulci" EXACT PLURAL [DHBA:10610] +synonym: "cerebral sulci" RELATED [NeuroNames:1208] +synonym: "cerebral sulcus" RELATED [NeuroNames:1208] +synonym: "fissure of brain" NARROW [http://en.wikipedia.org/wiki/Sulcus_(neuroanatomy)] +synonym: "sulci & spaces" BROAD PLURAL [HBA:9352] +synonym: "sulcus" BROAD [NLX:144078] +xref: DHBA:10610 +xref: HBA:9352 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1208 +xref: http://www.snomedbrowser.com/Codes/Details/279337001 +xref: NCIT:C32292 +xref: Sulcus:(neuroanatomy) +is_a: UBERON:0000093 ! sulcus +intersection_of: UBERON:0000093 ! sulcus +intersection_of: part_of UBERON:0000955 ! brain +relationship: dubious_for_taxon NCBITaxon:10088 +relationship: part_of UBERON:0000955 ! brain +relationship: surrounds UBERON:0000200 ! gyrus + +[Term] +id: UBERON:0013119 +name: haemal node +def: "A lymphoid organ found in various mammals and some birds." [http://en.wikipedia.org/wiki/Haemal_nodes] +comment: Hemal nodes are characterized by the presence of large numbers of erythrocytes. Lymph nodes (see below) and hemal nodes share some similarities of structure, but really are fundamentally different organs both qualitatively and quantitatively. Both lymph and hemal nodes contain diffuse lymphatic tissue, and in most cases have nodular tissue in the form of germinal centers, as well. Like the lymph node, the hemal node has a cortex and a medulla, and germinal centers are frequently seen. There's a distinct capsule, and hemal nodes are served at the hilus by an afferent arteriole. [http://www.vetmed.vt.edu/education/curriculum/vm8054/labs/lab13/lab13.htm] +synonym: "hemal node" EXACT [] +xref: Haemal:nodes +is_a: UBERON:0002075 ! viscus +is_a: UBERON:0004177 ! hemopoietic organ +is_a: UBERON:0005057 ! immune organ +relationship: develops_from UBERON:0001637 ! artery + +[Term] +id: UBERON:0013120 +name: eyelid submuscular connective tissue +xref: EMAPA:37534 {source="MA:th"} +xref: MA:0001253 +is_a: UBERON:0003581 {source="MA"} ! eyelid connective tissue + +[Term] +id: UBERON:0013121 +name: proximal epiphysis of phalanx of pes +synonym: "basal epiphysis of phalanx of foot" EXACT [FMA:32888] +synonym: "base of phalanx of foot" EXACT [FMA:32888] +synonym: "basis phalangis (pedis)" EXACT [FMA:32888] +synonym: "basis phalangis pedis" EXACT [FMA:TA] +synonym: "proximal epiphysis of phalanx of toe" EXACT [FMA:32888] +xref: FMA:32888 +is_a: UBERON:0004447 ! proximal epiphysis of phalanx +is_a: UBERON:0011973 ! epiphysis of phalanx of pes +intersection_of: UBERON:0004380 ! proximal epiphysis +intersection_of: part_of UBERON:0001449 ! phalanx of pes +relationship: part_of UBERON:0001449 ! phalanx of pes + +[Term] +id: UBERON:0013122 +name: distal epiphysis of phalanx of pes +synonym: "caput phalangis (pedis)" EXACT [FMA:32890] +synonym: "caput phalangis pedis" EXACT [FMA:TA] +synonym: "distal end of phalanx of foot" EXACT [FMA:32890] +synonym: "distal epiphysis of phalanx of toe" EXACT [FMA:32890] +synonym: "head of phalanx of foot" EXACT [FMA:32890] +synonym: "ungual tuberosity of distal phalanx of toe" RELATED [FMA:32890] +xref: FMA:32890 +xref: http://www.snomedbrowser.com/Codes/Details/236801009 +is_a: UBERON:0004448 ! distal epiphysis of phalanx +is_a: UBERON:0011973 ! epiphysis of phalanx of pes +intersection_of: UBERON:0004379 ! distal epiphysis +intersection_of: part_of UBERON:0001449 ! phalanx of pes +relationship: part_of UBERON:0001449 ! phalanx of pes + +[Term] +id: UBERON:0013124 +name: left posterior cardinal vein +def: "A posterior cardinal vein that is in_the_left_side_of a multicellular organism." [OBOL:automatic] +synonym: "left postcardinal vein" EXACT [FMA:70316] +synonym: "posterior cardinal vein left" EXACT [EHDAA2:0001486] +xref: EHDAA2:0001486 +xref: FMA:70316 +xref: http://www.snomedbrowser.com/Codes/Details/361504002 +is_a: UBERON:0002065 ! posterior cardinal vein +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0002065 ! posterior cardinal vein +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0013125 +name: left subcardinal vein +def: "A subcardinal vein that is in_the_left_side_of a multicellular organism." [OBOL:automatic] +synonym: "subcardinal vein left" EXACT [EHDAA2:0001932] +xref: EHDAA2:0001932 +xref: http://www.snomedbrowser.com/Codes/Details/361451002 +is_a: UBERON:0006296 ! subcardinal vein +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0006296 ! subcardinal vein +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0013126 +name: vein of abdomen +def: "A vein that is part of a abdomen." [OBOL:automatic] +subset: grouping_class +synonym: "abdominal vein" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/281473003 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003497 ! abdomen blood vessel +intersection_of: UBERON:0001638 ! vein +intersection_of: part_of UBERON:0000916 ! abdomen + +[Term] +id: UBERON:0013127 +name: pulmonary venous system +def: "The part of the venous system that drains the lungs[Kardong]" [http://en.wikipedia.org/wiki/Pulmonary_venous_system, ISBN:0073040584] +synonym: "pulmonary venous circulatory system" EXACT [] +xref: http://en.wikipedia.org/wiki/Pulmonary_venous_system +is_a: UBERON:0002049 ! vasculature +relationship: channels_from UBERON:0000102 ! lung vasculature +relationship: part_of UBERON:0004582 ! venous system + +[Term] +id: UBERON:0013128 +name: bulb of penis +def: "Just before each crus of the penis meets its fellow it presents a slight enlargement, named by Kobelt the bulb of the corpus spongiosum penis. It is homologous to the vestibular bulbs in females." [http://en.wikipedia.org/wiki/Bulb_of_penis] +synonym: "bulb of the corpus cavernosum penis" RELATED [http://en.wikipedia.org/wiki/Bulb_of_penis] +synonym: "bulb of the corpus spongiousum penis" RELATED [http://en.wikipedia.org/wiki/Bulb_of_penis] +synonym: "bulb of the penis" RELATED [http://en.wikipedia.org/wiki/Bulb_of_penis] +synonym: "bulb of the urethra" RELATED [http://en.wikipedia.org/wiki/Bulb_of_penis] +synonym: "bulbus penis" EXACT LATIN [http://en.wikipedia.org/wiki/Bulb_of_penis] +synonym: "penile bulb" EXACT [FMA:19614] +synonym: "urethral bulb" EXACT [FMA:19614] +synonym: "urethral bulb" RELATED [http://en.wikipedia.org/wiki/Bulb_of_penis] +xref: FMA:19614 +xref: http://en.wikipedia.org/wiki/Bulb_of_penis +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0001299 {source="FMA"} ! glans penis + +[Term] +id: UBERON:0013129 +name: bulb of vestibule +def: "Aggregations of erectile tissue that are an internal part of the clitoris. They can also be found throughout the vestibule: next to the clitoral body, clitoral crura, urethra, urethral sponge, and vagina." [http://en.wikipedia.org/wiki/Vestibular_bulbs] +synonym: "bulbus vestibuli" RELATED [http://en.wikipedia.org/wiki/Vestibular_bulbs] +synonym: "bulbus vestibuli vaginae" EXACT LATIN [http://en.wikipedia.org/wiki/Vestibular_bulbs] +synonym: "clitoral bulb" RELATED [http://en.wikipedia.org/wiki/Vestibular_bulbs] +synonym: "vestibular bulb" EXACT [FMA:20199] +synonym: "vestibular bulb of vagina" EXACT [] +xref: FMA:20199 +xref: http://www.snomedbrowser.com/Codes/Details/279873003 +xref: Vestibular:bulbs +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0015212 ! lateral structure +relationship: composed_primarily_of UBERON:0008324 ! erectile tissue +relationship: in_lateral_side_of UBERON:0000997 ! mammalian vulva +relationship: part_of UBERON:0000997 ! mammalian vulva +relationship: sexually_homologous_to UBERON:0013128 ! bulb of penis + +[Term] +id: UBERON:0013131 +name: lobe of tail +synonym: "fluke" NARROW [] +synonym: "tail fluke" NARROW [] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0007812 ! post-anal tail + +[Term] +id: UBERON:0013132 +name: penicillar arteriole +def: "One of the small straight arteries of the red pulp of the spleen; a branch of the spleen central artery that supplies the red pulp[WP,modified]" [http://www.merriam-webster.com/medical/penicillus, https://orcid.org/0000-0002-6601-2165] +synonym: "penicillar artery" RELATED [] +synonym: "penicilli" EXACT PLURAL [http://www.merriam-webster.com/medical/penicilli] +synonym: "penicillus" EXACT [FMA:16038] +xref: FMA:16038 +is_a: UBERON:0010399 ! spleen trabecular artery +is_a: UBERON:0022292 ! splenic arteriole +relationship: branching_part_of UBERON:0010401 {source="Trabecular:arteries"} ! spleen central arteriole +relationship: part_of UBERON:0010401 ! spleen central arteriole +relationship: supplies UBERON:0001250 {source="Trabecular:arteries"} ! red pulp of spleen + +[Term] +id: UBERON:0013133 +name: superior phrenic artery +def: "A phrenic artery that arises from the lower part of the thoracic aorta and is distributed to the posterior part of the upper surface of the diaphragm, and anastomoses with the musculophrenic and pericardiacophrenic arteries." [http://en.wikipedia.org/wiki/Superior_phrenic_artery, http://orcid.org/0000-0002-6601-2165] +synonym: "arteria phrenicea superioris" EXACT LATIN [FMA:4163, FMA:TA] +synonym: "arteriae phrenicae superiores" EXACT LATIN [http://en.wikipedia.org/wiki/Superior_phrenic_artery] +synonym: "superior phrenic branches" RELATED [http://en.wikipedia.org/wiki/Superior_phrenic_artery] +xref: FMA:4163 +xref: http://en.wikipedia.org/wiki/Superior_phrenic_artery +xref: http://www.snomedbrowser.com/Codes/Details/198521008 +is_a: UBERON:0002057 ! phrenic artery +is_a: UBERON:0003834 ! thoracic segment blood vessel +relationship: branching_part_of UBERON:0001515 {source="Wikipedia"} ! thoracic aorta +relationship: part_of UBERON:0001515 ! thoracic aorta + +[Term] +id: UBERON:0013135 +name: interdental plate +def: "The interdental plate refers to the bone-filled mesial-distal region between the teeth" [http://en.wikipedia.org/wiki/Interdental_plate] +xref: Interdental:plate +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0005913 ! zone of bone organ +intersection_of: located_in UBERON:0012111 ! diastema +relationship: located_in UBERON:0012111 ! diastema +relationship: part_of UBERON:0001708 ! jaw skeleton + +[Term] +id: UBERON:0013136 +name: vein of lip +def: "A vein that drains a lip." [OBOL:automatic] +synonym: "labial vein" RELATED [] +synonym: "labial vein of face" EXACT [] +synonym: "lip vein" EXACT [OBOL:automatic] +synonym: "vena labialis" EXACT LATIN [] +xref: http://www.snomedbrowser.com/Codes/Details/367664002 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0003502 ! neck blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0001833 ! lip +relationship: drains UBERON:0001833 ! lip +relationship: part_of UBERON:0001653 ! facial vein +relationship: tributary_of UBERON:0001653 {source="FMA"} ! facial vein + +[Term] +id: UBERON:0013137 +name: external pudendal artery +def: "Either the superficial or deep external pudendal arteries" [http://en.wikipedia.org/wiki/External_pudendal_artery] +xref: http://en.wikipedia.org/wiki/External_pudendal_artery +xref: http://www.snomedbrowser.com/Codes/Details/244308005 +is_a: UBERON:0007312 ! pudendal artery + +[Term] +id: UBERON:0013138 +name: coronary ligament of liver +def: "The coronary ligament of the liver refers to parts of the peritoneal reflections that hold the liver to the inferior surface of the diaphragm." [http://en.wikipedia.org/wiki/Coronary_ligament] +synonym: "coronary ligament" EXACT [FMA:15822] +synonym: "ligamentum coronaria" RELATED [http://en.wikipedia.org/wiki/Coronary_ligament] +synonym: "ligamentum coronarium" EXACT [FMA:15822] +synonym: "ligamentum coronarium hepatis" EXACT LATIN [FMA:TA] +xref: Coronary:ligament +xref: FMA:15822 +xref: http://linkedlifedata.com/resource/umls/id/C1261099 +xref: http://www.snomedbrowser.com/Codes/Details/279967000 +xref: NCIT:C32377 +xref: UMLS:C1261099 {source="ncithesaurus:Coronary_Ligament"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0013139 ! ligament of liver +relationship: attaches_to UBERON:0001103 ! diaphragm +relationship: part_of UBERON:0001178 {source="FMA"} ! visceral peritoneum +relationship: part_of UBERON:0002095 {source="FMA-modified"} ! mesentery + +[Term] +id: UBERON:0013139 +name: ligament of liver +def: "A nonskeletal ligament that is part of a liver." [OBOL:automatic] +synonym: "hepatic ligament" EXACT [FMA:15820] +synonym: "liver ligament" EXACT [] +xref: FMA:15820 +xref: http://linkedlifedata.com/resource/umls/id/C0230238 +xref: http://www.snomedbrowser.com/Codes/Details/48536008 +xref: NCIT:C32997 +xref: UMLS:C0230238 {source="ncithesaurus:Liver_Ligament"} +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0005172 ! abdomen element +is_a: UBERON:0008845 ! nonskeletal ligament +is_a: UBERON:0013765 ! digestive system element +intersection_of: UBERON:0008845 ! nonskeletal ligament +intersection_of: part_of UBERON:0002107 ! liver +relationship: part_of UBERON:0002107 ! liver + +[Term] +id: UBERON:0013140 +name: systemic vein +def: "Any vein within the general circulation that transports blood back to the right atrium of the heart." [ncithesaurus:Systemic_Vein] +synonym: "systemic venous tree organ part" EXACT [FMA:66644] +xref: FMA:66644 +xref: http://linkedlifedata.com/resource/umls/id/C0447117 +xref: http://www.snomedbrowser.com/Codes/Details/244389004 +xref: NCIT:C33719 +xref: UMLS:C0447117 {source="ncithesaurus:Systemic_Vein"} +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: part_of UBERON:0004581 ! systemic venous system +relationship: part_of UBERON:0004581 ! systemic venous system + +[Term] +id: UBERON:0013141 +name: capillary bed +def: "A localized group of blood capillaries." [AEO:0001002] +synonym: "microcirculatory bed" RELATED [] +xref: AEO:0001002 +xref: EMAPA:36291 +xref: FMA:45632 +xref: http://linkedlifedata.com/resource/umls/id/C1513268 +xref: NCIT:C33109 +is_a: UBERON:0006914 ! squamous epithelium +is_a: UBERON:0007502 {source="AEO"} ! epithelial plexus +relationship: composed_primarily_of UBERON:0001982 ! capillary +relationship: part_of UBERON:0002049 {source="FMA"} ! vasculature + +[Term] +id: UBERON:0013142 +name: soleal vein +def: "A vein that drains the soleus" [OBOL:automatic] +synonym: "soleus vein" EXACT [] +synonym: "vein of soleus muscle" EXACT [] +synonym: "vena solealis" EXACT LATIN [] +xref: http://www.snomedbrowser.com/Codes/Details/397427005 +is_a: UBERON:0001551 {source="cjm"} ! vein of hindlimb zeugopod +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0001389 ! soleus muscle +relationship: drains UBERON:0001389 ! soleus muscle + +[Term] +id: UBERON:0013143 +name: gastrocnemius vein +def: "A vein that drains the gastrocnemius" [OBOL:automatic] +comment: divided in medial gastrocnemius vein (vena medialis gastrocnemii), lateral gastrocnemius vein (vena lateralis gastrocnemii), and intergemellar vein (Vena intergemellaris), the vein ascending between the two heads of the gastrocnemius[http://www.veinsurg.com/fr/biblio/echodoppler/echodoppler_11.php] +synonym: "vein of gastrocnemius muscle" EXACT [] +synonym: "vena gastrocnemii" EXACT LATIN [] +xref: http://www.snomedbrowser.com/Codes/Details/264481007 +is_a: UBERON:0001551 {source="cjm"} ! vein of hindlimb zeugopod +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0001388 ! gastrocnemius +relationship: drains UBERON:0001388 ! gastrocnemius + +[Term] +id: UBERON:0013144 +name: vein of genicular venous plexus +comment: The term genicular venous plexus (plexus venosus genicularis) should replace the term genicular veins. At the knee, deep veins do not correspond exactly to the branches of the popliteal artery (articular arteries). They are arranged in a complex plexus of interconnecting veins.[http://www.veinsurg.com/fr/biblio/echodoppler/echodoppler_11.php] +synonym: "genicular vein" RELATED [FMA:44559] +xref: FMA:44559 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003503 ! leg blood vessel +relationship: part_of UBERON:0001465 ! knee +relationship: part_of UBERON:0001544 ! popliteal vein +relationship: tributary_of UBERON:0001544 {source="FMA"} ! popliteal vein + +[Term] +id: UBERON:0013145 +name: accessory saphenous vein +synonym: "posteromedial vein of thigh" EXACT [FMA:44320] +xref: FMA:44320 +xref: http://www.snomedbrowser.com/Codes/Details/302677006 +is_a: UBERON:0007318 ! saphenous vein +relationship: part_of UBERON:0001363 ! great saphenous vein +relationship: tributary_of UBERON:0001363 {source="FMA"} ! great saphenous vein + +[Term] +id: UBERON:0013146 +name: venous system of brain +def: "." [http://www.ncbi.nlm.nih.gov/pubmed/20557782, http://www.ncbi.nlm.nih.gov/pubmed/20566102] +synonym: "brain venous system" EXACT [VHOG:0001328] +synonym: "cranial venous system" RELATED [] +xref: EHDAA2:0000185 +xref: EMAPA:18631 +xref: MA:0003184 +xref: VHOG:0001328 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0007798 {source="cjm"} ! vascular system +relationship: part_of UBERON:0000955 {source="EHDAA2"} ! brain +relationship: part_of UBERON:0004582 {source="VHOG-modified"} ! venous system + +[Term] +id: UBERON:0013147 +name: early mesencephalic vesicle +comment: gives rise to midbrain vesicle which gives rise to cerebral aqueduct +synonym: "mesencephalic vesicle" EXACT [EHDAA2:0001102] +xref: EHDAA2:0001102 +is_a: UBERON:0013150 ! future brain vesicle +relationship: part_of UBERON:0009616 {source="EHDAA2"} ! presumptive midbrain + +[Term] +id: UBERON:0013148 +name: early midbrain vesicle +comment: develops into cerebral aqueduct +synonym: "midbrain vesicle" EXACT [EHDAA2:0001103] +xref: EHDAA2:0001103 +xref: http://www.snomedbrowser.com/Codes/Details/361481005 +is_a: UBERON:0013150 ! future brain vesicle +relationship: develops_from UBERON:0013147 {source="EHDAA2"} ! early mesencephalic vesicle +relationship: part_of UBERON:0001891 {source="EHDAA2"} ! midbrain + +[Term] +id: UBERON:0013149 +name: hindbrain vesicle +comment: gives rise of 4th ventricle +synonym: "rhombencephalic vesicle" EXACT [EHDAA2:0000101] +xref: EHDAA2:0000101 +xref: EMAPA:16917 +xref: http://www.snomedbrowser.com/Codes/Details/361482003 +is_a: UBERON:0013150 ! future brain vesicle +relationship: part_of UBERON:0007277 {source="EHDAA2"} ! presumptive hindbrain + +[Term] +id: UBERON:0013150 +name: future brain vesicle +synonym: "brain vesicle" RELATED [] +synonym: "early brain vesicle" EXACT [] +synonym: "primary brain vesicle" NARROW [] +synonym: "primitive brain vesicle" EXACT [] +synonym: "secondary brain vesicle" NARROW [] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2499 +xref: http://www.snomedbrowser.com/Codes/Details/360409004 +xref: NCIT:C34259 +is_a: UBERON:0010064 {source="EHDAA2"} ! open anatomical space +relationship: part_of UBERON:0005281 {source="EHDAA2"} ! ventricular system of central nervous system +relationship: part_of UBERON:0006238 ! future brain + +[Term] +id: UBERON:0013151 +name: choroidal artery +def: "One of two arteries (anterior and posterior choroidal artery) that supply blood to the choroid plexus, optic tract, hippocampus, globus pallidus, and other various brain regions." [ncithesaurus:Choroidal_Artery] +synonym: "artery of choroid plexus" EXACT [] +synonym: "choroid artery" EXACT [] +xref: http://linkedlifedata.com/resource/umls/id/C0226164 +xref: http://www.snomedbrowser.com/Codes/Details/244210009 +xref: NCIT:C32310 +xref: UMLS:C0226164 {source="ncithesaurus:Choroidal_Artery"} +is_a: UBERON:0001637 ! artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0001886 ! choroid plexus +relationship: supplies UBERON:0001886 ! choroid plexus + +[Term] +id: UBERON:0013152 +name: interventricular foramen of heart +def: "A temporary opening between the developing ventricles of the heart. The ventricles arise as a single cavity is divided by the developing interventricular septum. Before the septum closes completely, the remaining opening between the two ventricles is termed the interventricular foramen." [http://en.wikipedia.org/wiki/Primary_interventricular_foramen] +comment: Phenotype notes: In some individuals, the foramen fails to close, leading to an interventricular septal defect known as a patent interventricular foramen +synonym: "interventricular foramen" RELATED [] +synonym: "primary interventricular foramen" RELATED [EHDAA2:0004064] +xref: EHDAA2:0004064 +xref: http://en.wikipedia.org/wiki/Primary_interventricular_foramen +is_a: UBERON:0004111 {source="EHDAA2"} ! anatomical conduit +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: located_in UBERON:0002094 {source="EHDAA2"} ! interventricular septum +relationship: part_of UBERON:0000922 ! embryo +relationship: part_of UBERON:0000948 ! heart + +[Term] +id: UBERON:0013153 +name: arachnoid villus +def: "Small protrusions of the arachnoid mater into vascular sinuses, acting as one-way pressure-sensitive valves." [http://en.wikipedia.org/wiki/Arachnoid_granulation, ISBN:0471888893] +synonym: "arachnoid granulations" RELATED [http://en.wikipedia.org/wiki/Arachnoid_granulation] +synonym: "arachnoid villi" RELATED PLURAL [http://en.wikipedia.org/wiki/Arachnoid_granulation] +synonym: "arachnoid villus" RELATED [http://en.wikipedia.org/wiki/Arachnoid_granulation] +synonym: "arachnoidal granulations" RELATED [http://en.wikipedia.org/wiki/Arachnoid_granulation] +synonym: "glandulae pacchioni" RELATED [http://en.wikipedia.org/wiki/Arachnoid_granulation] +synonym: "glandulæ pacchioni" RELATED [http://en.wikipedia.org/wiki/Arachnoid_granulation] +synonym: "granulationes arachnoideales" RELATED [http://en.wikipedia.org/wiki/Arachnoid_granulation] +synonym: "pacchioni's granulations" RELATED [http://en.wikipedia.org/wiki/Arachnoid_granulation] +synonym: "pacchionian bodies" RELATED [http://en.wikipedia.org/wiki/Arachnoid_granulation] +synonym: "pacchionian glands" RELATED [http://en.wikipedia.org/wiki/Arachnoid_granulation] +synonym: "paccini's granulation" RELATED [http://en.wikipedia.org/wiki/Arachnoid_granulation] +xref: Arachnoid:granulation +xref: FMA:83980 +xref: http://linkedlifedata.com/resource/umls/id/C0228130 +xref: NCIT:C32137 +xref: UMLS:C0228130 {source="ncithesaurus:Arachnoid_Villus"} +is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0002362 {source="FMA"} ! arachnoid mater + +[Term] +id: UBERON:0013154 +name: 1st arch maxillary endoderm +synonym: "endoderm of maxillary component" EXACT [EMAPA:16390] +xref: EHDAA2:0000040 +xref: EMAPA:16390 +is_a: UBERON:0003258 ! endoderm of foregut +is_a: UBERON:0005291 ! embryonic tissue +relationship: develops_from UBERON:0007122 {source="EHDAA2"} ! pharyngeal pouch 1 +relationship: part_of UBERON:0007238 {source="EHDAA2"} ! 1st arch maxillary component +relationship: part_of UBERON:0009722 {source="EHDAA2"} ! entire pharyngeal arch endoderm + +[Term] +id: UBERON:0013155 +name: 1st arch mandibular ectoderm +synonym: "ectoderm of mandibular component" EXACT [EMAPA:16383] +xref: EHDAA2:0000032 +xref: EMAPA:16383 +is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium +is_a: UBERON:0015833 ! foregut epithelium +relationship: develops_from UBERON:0000076 {source="EHDAA2"} ! external ectoderm +relationship: part_of UBERON:0000076 {source="EHDAA2"} ! external ectoderm +relationship: part_of UBERON:0007237 {source="EHDAA2"} ! 1st arch mandibular component + +[Term] +id: UBERON:0013156 +name: 1st arch mandibular endoderm +synonym: "endoderm of mandibular component" EXACT [EMAPA:16384] +xref: EHDAA2:0000033 +xref: EMAPA:16384 +is_a: UBERON:0003258 ! endoderm of foregut +is_a: UBERON:0005291 ! embryonic tissue +relationship: develops_from UBERON:0007122 {source="EHDAA2"} ! pharyngeal pouch 1 +relationship: part_of UBERON:0007237 {source="EHDAA2"} ! 1st arch mandibular component +relationship: part_of UBERON:0009722 {source="EHDAA2"} ! entire pharyngeal arch endoderm + +[Term] +id: UBERON:0013157 +name: 1st arch maxillary-mandibular cleft +synonym: "1st arch maxillary-mandibular groove ectoderm" EXACT [EHDAA2:0000046] +synonym: "ectoderm of maxillary-mandibular groove" EXACT [EMAPA:16395] +xref: EHDAA2:0000046 +xref: EMAPA:16395 +is_a: UBERON:0003258 ! endoderm of foregut +is_a: UBERON:0005879 ! pharyngeal cleft +relationship: part_of UBERON:0004362 {source="EHDAA2"} ! pharyngeal arch 1 + +[Term] +id: UBERON:0013158 +name: foregut-midgut junction gland +def: "A gland that is part of a foregut-midgut junction." [OBOL:automatic] +synonym: "gland of foregut-midgut junction" EXACT [EMAPA:17065] +xref: EHDAA2:0000574 +xref: EMAPA:17065 +is_a: UBERON:0003408 ! gland of digestive tract +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0006235 ! foregut-midgut junction +relationship: part_of UBERON:0006235 ! foregut-midgut junction + +[Term] +id: UBERON:0013159 +name: epithalamus mantle layer +synonym: "mantle layer epithalamus" EXACT [VHOG:0000913] +synonym: "mantle layer of epithalamus" EXACT [] +xref: EHDAA2:0000449 +xref: EHDAA:5435 +xref: EMAPA:17533 +xref: VHOG:0000913 +is_a: UBERON:0004061 ! neural tube mantle layer +intersection_of: UBERON:0004061 ! neural tube mantle layer +intersection_of: part_of UBERON:0001899 ! epithalamus +relationship: develops_from UBERON:0009580 ! diencephalon mantle layer +relationship: part_of UBERON:0001899 ! epithalamus + +[Term] +id: UBERON:0013160 +name: epithalamus ventricular layer +synonym: "ventricular layer epithalamus" EXACT [VHOG:0000884] +synonym: "ventricular layer of epithalamus" EXACT [] +xref: EHDAA2:0000450 +xref: EHDAA:5437 +xref: EMAPA:17535 +xref: VHOG:0000884 +is_a: UBERON:0004060 ! neural tube ventricular layer +intersection_of: UBERON:0004060 ! neural tube ventricular layer +intersection_of: part_of UBERON:0001899 ! epithalamus +relationship: part_of UBERON:0001899 ! epithalamus + +[Term] +id: UBERON:0013161 +name: left lateral ventricle +def: "A telencephalic ventricle that is in_the_left_side_of a telencephalon." [OBOL:automatic] +synonym: "left telencephalic ventricle" EXACT [] +xref: FMA:78450 +xref: http://www.snomedbrowser.com/Codes/Details/368593005 +is_a: UBERON:0002285 ! telencephalic ventricle +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0002285 ! telencephalic ventricle +intersection_of: in_left_side_of UBERON:0001893 ! telencephalon +relationship: in_left_side_of UBERON:0001893 ! telencephalon +relationship: part_of UBERON:0002812 {source="FMA"} ! left cerebral hemisphere + +[Term] +id: UBERON:0013162 +name: right lateral ventricle +def: "A telencephalic ventricle that is in_the_right_side_of a telencephalon." [OBOL:automatic] +synonym: "right telencephalic ventricle" EXACT [] +xref: FMA:78449 +xref: http://www.snomedbrowser.com/Codes/Details/368571000 +is_a: UBERON:0002285 ! telencephalic ventricle +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0002285 ! telencephalic ventricle +intersection_of: in_right_side_of UBERON:0001893 ! telencephalon +relationship: in_right_side_of UBERON:0001893 ! telencephalon +relationship: part_of UBERON:0002813 {source="FMA"} ! right cerebral hemisphere + +[Term] +id: UBERON:0013164 +name: molariform tooth +def: "A molar or premolar" [ISBN:0073040584] +synonym: "cheek tooth" RELATED [ISBN:0073040584] +synonym: "molariform" RELATED [ISBN:0073040584] +synonym: "postcanine tooth" EXACT [http://www.termwiki.com/EN\:postcanine_teeth] +is_a: UBERON:0001091 ! calcareous tooth +relationship: has_part UBERON:0006844 ! cusp of tooth + +[Term] +id: UBERON:0013165 +name: epiglottic vallecula +def: "A depression in front of the epiglottis, in which food is temporarily gathered as the animal chews." [http://en.wikipedia.org/wiki/Epiglottic_vallecula, ISBN:0073040584] +synonym: "vallecula" BROAD [] +synonym: "vallecula epiglottica" EXACT LATIN [] +synonym: "vallecula of epiglottis" EXACT [FMA:55037] +xref: Epiglottic:vallecula +xref: FMA:55037 +xref: http://www.snomedbrowser.com/Codes/Details/276955003 +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0000341 ! throat + +[Term] +id: UBERON:0013166 +name: vallecula of cerebellum +def: "On the upper surface of the cerebellum the vermis is elevated above the level of the hemispheres, but on the under surface it is sunk almost out of sight in the bottom of a deep depression between them; this depression is called the vallecula of the cerebellum, and lodges the posterior part of the medulla oblongata." [http://en.wikipedia.org/wiki/Vallecula_of_cerebellum] +synonym: "vallecula cerebelli" EXACT LATIN [FMA:75267] +xref: BAMS:vlcb +xref: FMA:75267 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=646 +xref: http://en.wikipedia.org/wiki/Vallecula_of_cerebellum +xref: NCIT:C12237 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001896 ! medulla oblongata + +[Term] +id: UBERON:0013167 +name: cricopharyngeal ligament +def: "Laryngeal ligament that connects the cricoid cartilage to the pharynx[WP,modified]" [http://en.wikipedia.org/wiki/Cricopharyngeal_ligament] +synonym: "crico-pharyngeal ligament" EXACT [] +synonym: "ligamentum cricopharyngeum" EXACT LATIN [http://en.wikipedia.org/wiki/Cricopharyngeal_ligament] +xref: Cricopharyngeal:ligament +xref: FMA:55260 +xref: http://www.snomedbrowser.com/Codes/Details/172455006 +is_a: UBERON:0001730 {source="FMA"} ! extrinsic ligament of larynx +intersection_of: UBERON:0001743 ! ligament of larynx +intersection_of: connects UBERON:0001042 ! chordate pharynx +intersection_of: connects UBERON:0002375 ! cricoid cartilage +relationship: connects UBERON:0001042 ! chordate pharynx +relationship: connects UBERON:0002375 ! cricoid cartilage + +[Term] +id: UBERON:0013168 +name: thyroepiglottic ligament +def: "Laryngeal ligament that connects the epiglottis to the thyroid cartilage[WP,modified]" [http://en.wikipedia.org/wiki/Thyroepiglottic_ligament] +synonym: "ligamentum thyroepiglotticum" EXACT LATIN [] +synonym: "thyroepiglottic ligament" EXACT [FMA:55230] +xref: FMA:55230 +xref: http://linkedlifedata.com/resource/umls/id/C0225514 +xref: http://www.snomedbrowser.com/Codes/Details/279562000 +xref: NCIT:C33777 +xref: Thyroepiglottic:ligament +xref: UMLS:C0225514 {source="ncithesaurus:Thyroepiglottic_Ligament"} +is_a: UBERON:0006325 {source="FMA"} ! laryngeal intrinsic ligament +intersection_of: UBERON:0001743 ! ligament of larynx +intersection_of: connects UBERON:0001738 ! thyroid cartilage +intersection_of: connects UBERON:0001742 ! epiglottic cartilage +relationship: connects UBERON:0001738 ! thyroid cartilage +relationship: connects UBERON:0001742 ! epiglottic cartilage + +[Term] +id: UBERON:0013169 +name: vestibular ligament +def: "The vestibular fold is a fibroelastic band which passes from the ventral margin of the cuneiform cartilage to the cranial dorsal surface of the thyroid cartilage. It forms the support for the free edge of the vestibular fold." [http://en.wikipedia.org/wiki/Vestibular_ligament, MURDOCH:2193] +synonym: "ligamentum vestibulare" EXACT LATIN [http://en.wikipedia.org/wiki/Vestibular_ligament] +synonym: "ventricular ligament" EXACT [http://en.wikipedia.org/wiki/Vestibular_ligament] +synonym: "vestibular ligament of larynx" EXACT [] +xref: FMA:64147 +xref: http://www.snomedbrowser.com/Codes/Details/279561007 +xref: Vestibular:ligament +is_a: UBERON:0006325 {source="FMA"} ! laryngeal intrinsic ligament +intersection_of: UBERON:0001743 ! ligament of larynx +intersection_of: connects UBERON:0001738 ! thyroid cartilage +intersection_of: connects UBERON:0011157 ! cuneiform cartilage +relationship: connects UBERON:0001738 ! thyroid cartilage +relationship: connects UBERON:0011157 ! cuneiform cartilage + +[Term] +id: UBERON:0013170 +name: cricoarytenoid ligament +def: "Laryngeal ligament that connects the cricoid and arytenoid cartilages[WP,modified]" [http://en.wikipedia.org/wiki/Cricoarytenoid_ligament] +synonym: "crico-arytenoid ligament" EXACT [FMA:55261] +synonym: "ligamentum cricoaryteneoideum" EXACT LATIN [http://en.wikipedia.org/wiki/Cricoarytenoid_ligament] +xref: Cricoarytenoid:ligament +xref: FMA:55261 +xref: http://www.snomedbrowser.com/Codes/Details/172533001 +is_a: UBERON:0001730 {source="FMA"} ! extrinsic ligament of larynx +intersection_of: UBERON:0001743 ! ligament of larynx +intersection_of: connects UBERON:0001740 ! arytenoid cartilage +intersection_of: connects UBERON:0002375 ! cricoid cartilage +relationship: connects UBERON:0001740 ! arytenoid cartilage +relationship: connects UBERON:0002375 ! cricoid cartilage + +[Term] +id: UBERON:0013171 +name: cricothyroid ligament +def: "This attaches the caudal border of the thyroid cartilage to the ventral arch of the cricoid cartilage. Its sheetlike ventral portion is sometimes referred to as the cricothyroid membrane. Being elastic, it 'balances' movement at the hinge-like cricothyroid joint and determines the resting position of the larynx when the muscles are relaxed[MURDOCH]. The cricothyroid ligament is the larger part of the laryngeal membrane, continuing inferiorly as a median or anterior part and twin lateral ligaments. The median cricothyroid ligament is a flat band of white tissue joining the cricoid and thyroid cartilages, while the lateral cricothyroid ligament is also known as the cricothyroid membrane (also called conus elasticus)." [http://en.wikipedia.org/wiki/Cricothyroid_ligament, MURDOCH:483] +synonym: "crico-thyroid ligament" EXACT [] +synonym: "ligamentum cricothyreoideum" EXACT LATIN [http://en.wikipedia.org/wiki/Cricothyroid_ligament] +xref: Cricothyroid:ligament +xref: FMA:55233 +xref: http://linkedlifedata.com/resource/umls/id/C0225542 +xref: http://www.snomedbrowser.com/Codes/Details/279558006 +xref: NCIT:C32403 +xref: UMLS:C0225542 {source="ncithesaurus:Cricothyroid_Ligament"} +is_a: UBERON:0001743 ! ligament of larynx +intersection_of: UBERON:0001743 ! ligament of larynx +intersection_of: connects UBERON:0001738 ! thyroid cartilage +intersection_of: connects UBERON:0002375 ! cricoid cartilage +relationship: connects UBERON:0001738 ! thyroid cartilage +relationship: connects UBERON:0002375 ! cricoid cartilage + +[Term] +id: UBERON:0013172 +name: cricotracheal ligament +def: "The cricotracheal ligament connects the cricoid cartilage with the first ring of the trachea[WP]. The caudal border of the cricoid cartilage is joined to the first ring of the trachea by this ligament. It is an extrinsic laryngeal ligament. It resembles the fibrous membrane which connects the cartilaginous rings of the trachea to each other." [http://en.wikipedia.org/wiki/Cricotracheal_ligament, MURDOCH:486] +xref: Cricotracheal:ligament +xref: FMA:55259 +xref: http://linkedlifedata.com/resource/umls/id/C0225543 +xref: http://www.snomedbrowser.com/Codes/Details/279553002 +xref: NCIT:C32405 +xref: UMLS:C0225543 {source="ncithesaurus:Cricotracheal_Ligament"} +is_a: UBERON:0001730 {source="FMA"} ! extrinsic ligament of larynx +intersection_of: UBERON:0001743 ! ligament of larynx +intersection_of: connects UBERON:0002375 ! cricoid cartilage +intersection_of: connects UBERON:0003604 ! trachea cartilage +relationship: connects UBERON:0002375 ! cricoid cartilage +relationship: connects UBERON:0003604 ! trachea cartilage + +[Term] +id: UBERON:0013173 +name: anterior part of tympanic bone +def: "The anterior aspect of the tympanum." [ncithesaurus:Anterior_Wall_of_the_Tympanum] +synonym: "anterior surface of tympanic plate" EXACT [FMA:56478] +synonym: "anterior wall of tympanic cavity" EXACT [] +synonym: "anterior wall of tympanum" EXACT [] +xref: FMA:56478 +xref: http://linkedlifedata.com/resource/umls/id/C1510916 +xref: http://www.snomedbrowser.com/Codes/Details/368942006 +xref: NCIT:C32117 +xref: UMLS:C1510916 {source="ncithesaurus:Anterior_Wall_of_the_Tympanum"} +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0010066 ! tympanic plate + +[Term] +id: UBERON:0013174 +name: sigmoid process of tympanic bone +def: "A wavy crest externally on the tympanic bone of cetaceans." [http://palaeos.com/vertebrates/glossary/glossaryS.html] +synonym: "sigmoid process" EXACT [] +synonym: "sigmoid process of auditory bulla" EXACT [] +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0008959 ! auditory bulla + +[Term] +id: UBERON:0013175 +name: nasal air sac +def: "An air sac opening into the passage of the blowhole that is hypothesized to be involved in echolocation" [http://palaeos.com/vertebrates/cetartiodactyla/cetacea.html] +synonym: "blowhole air sac" EXACT [] +is_a: UBERON:0004111 ! anatomical conduit +relationship: located_in UBERON:0001707 ! nasal cavity +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0013176 +name: phonic lip +synonym: "monkey lips" RELATED [http://palaeos.com/vertebrates/cetartiodactyla/cetacea.html] +synonym: "museau de singe@fr" EXACT [] +synonym: "phonic lips" RELATED PLURAL [] +is_a: UBERON:0000481 ! multi-tissue structure +relationship: located_in UBERON:0013177 ! dorsal bursa +relationship: part_of UBERON:0013188 {notes="check for sperm whales"} ! monkey lips dorsal bursa complex + +[Term] +id: UBERON:0013177 +name: dorsal bursa +synonym: "dorsal bursae" RELATED PLURAL [] +synonym: "fatty dorsal bursa" RELATED [] +is_a: UBERON:0001013 ! adipose tissue +is_a: UBERON:0003566 ! head connective tissue +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0000033 ! head +relationship: part_of UBERON:0013188 {notes="check for sperm whales"} ! monkey lips dorsal bursa complex + +[Term] +id: UBERON:0013178 +name: anterior dorsal bursa +synonym: "anterior bursa" BROAD [] +is_a: UBERON:0013177 ! dorsal bursa +disjoint_from: UBERON:0013179 {source="lexical"} ! posterior dorsal bursa + +[Term] +id: UBERON:0013179 +name: posterior dorsal bursa +synonym: "posterior bursa" BROAD [] +is_a: UBERON:0013177 ! dorsal bursa + +[Term] +id: UBERON:0013180 +name: bursal cartilage +is_a: UBERON:0007844 ! cartilage element +relationship: located_in UBERON:0013177 ! dorsal bursa +relationship: part_of UBERON:0013188 ! monkey lips dorsal bursa complex + +[Term] +id: UBERON:0013181 +name: blowhole ligament +is_a: UBERON:0008845 ! nonskeletal ligament +relationship: part_of UBERON:0013188 ! monkey lips dorsal bursa complex + +[Term] +id: UBERON:0013182 +name: core of melon organ +def: "The core component of the ovoid-shaped, fatty organ found in the forehead of all toothed whales." [http://en.wikipedia.org/wiki/Melon_(whale)] +synonym: "melon core" RELATED [] +is_a: UBERON:0000479 ! tissue +relationship: composed_primarily_of UBERON:0001013 ! adipose tissue +relationship: part_of UBERON:0008960 ! melon organ + +[Term] +id: UBERON:0013188 +name: monkey lips dorsal bursa complex +def: "A structure consisting of a pair of anterior and posterior dorsal bursae in which a pair of phonic lips are embedded, along with the bursal cartilage and a blowhole ligament" [ISBM10:0120885522] +synonym: "MLDB complex" EXACT [] +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0000033 ! head +relationship: located_in UBERON:0001707 ! nasal cavity +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0013189 +name: junk chamber +synonym: "junk" RELATED [] +synonym: "junk bodies" RELATED PLURAL [] +synonym: "junk body" RELATED [] +synonym: "junk organ" RELATED [] +is_a: UBERON:0000062 ! organ +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0013190 +name: entotympanic bone +def: "Entotympanics are independent elements present in the auditory bullae of various eutherians" [https://doi.org/10.1023/A\:1020538313412] +synonym: "entotyympanic" RELATED [] +is_a: UBERON:0002513 {source="https://doi.org/10.1023/A:1020538313412"} ! endochondral bone +is_a: UBERON:0003457 ! head bone +relationship: part_of UBERON:0001756 ! middle ear + +[Term] +id: UBERON:0013191 +name: ovarian cortex +def: "the layer of the ovarian stroma lying immediately beneath the tunica albuginea, composed of connective tissue cells and fibers, among which are scattered primary and secondary (antral) follicles in various stages of development; the cortex varies in thickness according to the age of the individual, becoming thinner with advancing years; included in the follicles are the cumulus oophorus, membrana granulosa (and the granulosa cells inside it), corona radiata, zona pellucida, and primary oocyte; the zona pellucida, theca of follicle, antrum and liquor folliculi are also contained in the follicle; also in the cortex is the corpus luteum derived from the follicles." [MGI:anna] +subset: pheno_slim +synonym: "cortex of ovary" EXACT [FMA:18613] +synonym: "cortex ovarii (zona parenchymatosa)" EXACT [FMA:18613] +xref: EMAPA:37927 {source="MA:th"} +xref: FMA:18613 +xref: http://linkedlifedata.com/resource/umls/id/C0227878 +xref: NCIT:C33243 +xref: UMLS:C0227878 {source="ncithesaurus:Ovarian_Cortex"} +is_a: UBERON:0001851 ! cortex +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0001851 ! cortex +intersection_of: part_of UBERON:0000992 ! ovary +relationship: part_of UBERON:0006960 ! ovary stroma + +[Term] +id: UBERON:0013192 +name: ovarian medulla +def: "highly vascular stroma found in the center of the ovary that forms from embryonic mesenchyme and contains blood vessels, lymphatic vessels, and nerves; this stroma forms the tissue of the hilum by which the ovarian ligament is attached, and through which the blood vessels enter; it does not contain any ovarian follicles." [MGI:anna] +subset: pheno_slim +synonym: "medulla of ovary" EXACT [FMA:18616] +synonym: "medulla ovarii (zona vasculosa)" EXACT [FMA:18616] +synonym: "zona vasculosa of Waldeyer" RELATED [http://en.wikipedia.org/wiki/Medulla_of_ovary] +xref: EMAPA:37928 {source="MA:th"} +xref: FMA:18616 +xref: http://en.wikipedia.org/wiki/Medulla_of_ovary +xref: http://linkedlifedata.com/resource/umls/id/C0227879 +xref: NCIT:C33245 +xref: UMLS:C0227879 {source="ncithesaurus:Ovarian_Medulla"} +is_a: UBERON:0000958 ! medulla of organ +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0000958 ! medulla of organ +intersection_of: part_of UBERON:0000992 ! ovary +relationship: part_of UBERON:0000992 ! ovary + +[Term] +id: UBERON:0013193 +name: parakeratinized epithelium +def: "An epithelium that is characterized by incomplete keratinization of the cells in the stratum corneum. The cells are flattened and composed primarily of packed tonofilaments. However, the cells may retain remnants of nuclei and other organelles" [http://www.dental.pitt.edu/informatics/periohistology/en/glossary.html] +comment: Example: parts of oral epithelium +is_a: UBERON:0000488 ! atypical epithelium + +[Term] +id: UBERON:0013194 +name: orthokeratinized epithelium +def: "A keratinized epithelium in which the cells of the stratum corneum become very flat, loose their nuclei and cytoplasmic organelles and are now composed of densely packed tonofilaments cemented by filaggrin" [http://www.dental.pitt.edu/informatics/periohistology/en/glossary.html] +is_a: UBERON:0000488 ! atypical epithelium + +[Term] +id: UBERON:0013195 +name: parakeratinized epithelium of gingiva +def: "A parakeratinized epithelium that is part of a gingiva." [OBOL:automatic] +synonym: "gingival parakeratinized epithelium" EXACT [] +is_a: UBERON:0001949 ! gingival epithelium +is_a: UBERON:0013193 ! parakeratinized epithelium +intersection_of: UBERON:0013193 ! parakeratinized epithelium +intersection_of: part_of UBERON:0001828 ! gingiva + +[Term] +id: UBERON:0013196 +name: strand of wool +def: "A strand of pelage hair that is crimped and grows in clusters" [http://en.wikipedia.org/wiki/Wool] +synonym: "animal wool" RELATED [] +synonym: "strand of wool hair" RELATED [] +synonym: "wool" RELATED [MESH:A13.970] +xref: http://www.snomedbrowser.com/Codes/Details/90080004 +xref: MESH:D014935 +is_a: UBERON:0010509 ! strand of pelage hair + +[Term] +id: UBERON:0013198 +name: cocoon +def: "A casing spun of silk by many moth caterpillars, and numerous other holometabolous insect larvae as a protective covering for the pupa[WP]." [http://en.wikipedia.org/wiki/Pupa#Cocoon] +comment: analagous to a puparium in other insects +is_a: UBERON:0018657 ! pupal case +disjoint_from: UBERON:0016927 ! mucus cocoon +relationship: composed_primarily_of UBERON:0012245 ! silk + +[Term] +id: UBERON:0013199 +name: stria of neuraxis +synonym: "neuraxis stria" EXACT [FMA:83854] +synonym: "neuraxis striae" EXACT PLURAL [] +synonym: "stria" BROAD [] +synonym: "striae" BROAD PLURAL [] +xref: FMA:83854 +is_a: UBERON:0002316 ! white matter + +[Term] +id: UBERON:0013201 +name: olfactory pathway +def: "Set of nerve fibers conducting impulses from olfactory receptors to the cerebral cortex. It includes the olfactory nerve; olfactory bulb; olfactory tract, olfactory tubercle, anterior perforated substance, and olfactory cortex. The term rhinencephalon is restricted to structures in the CNS receiving fibers from the olfactory bulb." [MESH:A08.186.211.577.699] +synonym: "anterior perforated substance" RELATED [MESH:A08.186.211.577.699] +synonym: "rhinencephalon" RELATED [MESH:A08.186.211.577.699] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2078 +xref: http://en.wikipedia.org/wiki/Rhinencephalon +xref: http://www.snomedbrowser.com/Codes/Details/281148007 +xref: MESH:A08.186.211.577.699 +is_a: UBERON:0000122 ! neuron projection bundle +is_a: UBERON:0011215 ! central nervous system cell part cluster +relationship: part_of UBERON:0000349 ! limbic system +relationship: part_of UBERON:0005725 ! olfactory system + +[Term] +id: UBERON:0013203 +name: hypogastrium +def: "The hypogastrium (or hypogastric region, or pubic region) is an area of the human abdomen located below the navel." [http://en.wikipedia.org/wiki/Hypogastrium] +synonym: "hypogastric part of abdomen" EXACT [FMA:14602] +synonym: "hypogastric region" EXACT [FMA:14602] +synonym: "hypogastric region" RELATED [http://en.wikipedia.org/wiki/Hypogastrium] +synonym: "pubic part of abdomen" EXACT [FMA:14602] +synonym: "pubic region" EXACT [FMA:14602] +synonym: "pubic region" RELATED [http://en.wikipedia.org/wiki/Hypogastrium] +synonym: "regio pubica" EXACT [FMA:TA] +synonym: "suprapubic region" EXACT [FMA:14602] +xref: CALOHA:TS-2346 +xref: FMA:14602 +xref: http://en.wikipedia.org/wiki/Hypogastrium +xref: http://linkedlifedata.com/resource/umls/id/C0230189 +xref: http://www.snomedbrowser.com/Codes/Details/182348003 +xref: NCIT:C32755 +xref: UMLS:C0230189 {source="ncithesaurus:Hypogastric_Region"} +is_a: UBERON:0009569 ! subdivision of trunk +relationship: part_of UBERON:0000916 ! abdomen +relationship: posterior_to UBERON:0007118 ! umbilicus + +[Term] +id: UBERON:0013204 +name: epipubic bone +def: "One of a pair of bones running antero-laterally from the centre of the pubis in marsupials and some other mammals" [http://orcid.org/0000-0002-6601-2165] +synonym: "marsupial bone" NARROW [] +xref: Epipubic:bone +is_a: UBERON:0007830 {source="cjm"} ! pelvic girdle bone/zone +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0001271 ! pelvic girdle region + +[Term] +id: UBERON:0013206 +name: nasal tentacle +def: "A fleshy appendage ringing the snout of a Star-nosed mole." [http://en.wikipedia.org/wiki/Star-nosed_mole] +synonym: "nasal ray" RELATED [] +xref: Star-nosed:mole +is_a: UBERON:0000021 ! cutaneous appendage +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: has_part UBERON:0011255 ! Eimer's organ +relationship: part_of UBERON:0001003 ! skin epidermis + +[Term] +id: UBERON:0013207 +name: entepicondylar foramen +def: "A canal through the medial epicondyle at the distal end of the vertebrate humerus, usually traversed by the median nerve and brachial artery." [http://www.jstor.org/discover/10.2307/2422468] +xref: Entepicondylar:foramen +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005744 ! bone foramen +relationship: conduit_for UBERON:0001148 ! median nerve +relationship: conduit_for UBERON:0001398 ! brachial artery +relationship: part_of UBERON:0004404 ! distal epiphysis of humerus +relationship: present_in_taxon NCBITaxon:376911 +relationship: present_in_taxon NCBITaxon:37887 +relationship: present_in_taxon NCBITaxon:38624 +relationship: present_in_taxon NCBITaxon:9255 +relationship: present_in_taxon NCBITaxon:9265 +relationship: present_in_taxon NCBITaxon:9322 +relationship: present_in_taxon NCBITaxon:9338 +relationship: present_in_taxon NCBITaxon:9363 +relationship: present_in_taxon NCBITaxon:9369 +relationship: present_in_taxon NCBITaxon:9376 +relationship: present_in_taxon NCBITaxon:9681 +relationship: present_in_taxon NCBITaxon:9709 + +[Term] +id: UBERON:0013208 +name: Grueneberg ganglion +def: "An olfactory ganglion at the entrance of the nose of mammals that is involved in the detection of alarm pheromones and cold temperatures." [http://en.wikipedia.org/wiki/Gr%C3%BCneberg_ganglion] +synonym: "GG" RELATED ABBREVIATION [NCBIBook:NBK55971] +synonym: "Gruneberg ganglion" RELATED [MA:0002891] +synonym: "Grüneberg ganglion" EXACT [] +synonym: "septal organ of Gruneberg" RELATED [MA:0002891] +xref: EMAPA:35765 +xref: Gr%C3%BCneberg:ganglion +xref: MA:0002891 +is_a: UBERON:0000045 ! ganglion +is_a: UBERON:0015245 {source="MA", source="NCBIBook:NBK55971"} ! septal olfactory organ + +[Term] +id: UBERON:0013211 +name: cerumen gland +def: "A specialized sudoriferous gland (sweat glands) located subcutaneously in the external auditory canal." [http://en.wikipedia.org/wiki/Ceruminous_glands] +subset: pheno_slim +synonym: "cerumen-secreting gland" EXACT [] +synonym: "ceruminous gland" EXACT [] +synonym: "ceruminous sweat gland" EXACT [ISBN:0123813611] +synonym: "earwax gland" EXACT [] +xref: Ceruminous:glands +xref: http://linkedlifedata.com/resource/umls/id/C0229352 +xref: http://www.snomedbrowser.com/Codes/Details/368648008 +xref: NCIT:C32294 +xref: UMLS:C0229352 {source="ncithesaurus:Ceruminous_Gland"} +is_a: UBERON:0000382 {source="ISBN:0123813611"} ! apocrine sweat gland +relationship: dubious_for_taxon NCBITaxon:10088 {source="https://github.com/obophenotype/mouse-anatomy-ontology/issues/99", source="ISBN:0123813611"} +relationship: located_in UBERON:0001352 ! external acoustic meatus +relationship: part_of UBERON:0001691 ! external ear +relationship: produces UBERON:0002297 ! cerumen + +[Term] +id: UBERON:0013212 +name: anal sac gland secretion +def: "A bodily secretion that is produced by a gland of anal sac." [OBOL:automatic] +synonym: "anal gland secretion" RELATED [] +synonym: "castoreum" NARROW SENSU [NCBITaxon:29132] +synonym: "civet" NARROW SENSU [NCBITaxon:9673] +synonym: "hyena butter" RELATED SENSU [http://en.wikipedia.org/wiki/Hyena_butter] +synonym: "musk" RELATED [NCBITaxon:30533] +synonym: "odorous sac" RELATED [] +is_a: UBERON:0000456 ! secretion of exocrine gland +intersection_of: UBERON:0000456 ! secretion of exocrine gland +intersection_of: produced_by UBERON:0011253 ! gland of anal sac +relationship: present_in_taxon NCBITaxon:119825 +relationship: present_in_taxon NCBITaxon:30533 +relationship: present_in_taxon NCBITaxon:9673 +relationship: produced_by UBERON:0011253 ! gland of anal sac + +[Term] +id: UBERON:0013213 +name: ossicone +def: "Ossicones are horn-like protuberances on the heads of giraffes, male okapis, and their extinct relatives, such as Sivatherium, and the climacoceratids, such as Climacoceras. Only giraffids have true ossicones (as opposed to horns or antlers). The base that a deer's antlers grow from is very similar to ossicones. Ossicones are similar to the horns of antelopes and cattle, save that they are derived from ossified cartilage, and that the ossicones remain covered in skin and fur, rather than horn. Antlers (such as on deer) are derived from bone tissue: when mature, the skin and fur covering of the antlers, termed 'velvet,' is sloughed and scraped off to expose the bone of the antlers." [http://en.wikipedia.org/wiki/Ossicone] +xref: http://en.wikipedia.org/wiki/Ossicone +is_a: UBERON:0006969 ! cranial appendage + +[Term] +id: UBERON:0013216 +name: udder +def: "A large pendulous organ consisting of two or more mammary glands enclosed in a common envelope and each provided with a single nipple." [http://en.wikipedia.org/wiki/Udder] +xref: http://en.wikipedia.org/wiki/Udder +xref: http://www.snomedbrowser.com/Codes/Details/27528008 +is_a: UBERON:0000481 ! multi-tissue structure +relationship: has_component UBERON:0001911 {minCardinality="2"} ! mammary gland +relationship: has_component UBERON:0002030 {cardonality="1"} ! nipple +relationship: has_part UBERON:0001911 ! mammary gland +relationship: has_part UBERON:0002030 ! nipple +relationship: part_of UBERON:0003100 ! female organism + +[Term] +id: UBERON:0013217 +name: zygomatic plate +def: "In rodent anatomy, the zygomatic plate is a bony plate derived from the flattened front part of the zygomatic arch (cheekbone). At the back, it connects to the front (maxillary) root of the zygomatic arch, and at the top it is connected to the rest of the skull via the antorbital bridge. It is part of the maxillary bone, or upper jaw, which also contains the upper cheekteeth. Primitively, rodents have a nearly horizontal zygomatic plate. In association with specializations in zygomasseteric system, several distinct morphologies have developed across the order. The term is also used for an analogous structure in some South American typotheres, including Pseudotypotherium and Medistylus." [http://en.wikipedia.org/wiki/Zygomatic_plate] +xref: Zygomatic:plate +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002397 ! maxilla +relationship: part_of UBERON:0002500 ! zygomatic arch + +[Term] +id: UBERON:0013218 +name: rete mirabile +def: "A rete mirabile (Latin for 'wonderful net'; plural retia mirabilia) is a complex of arteries and veins lying very close to each other, found in some vertebrates. The rete mirabile utilizes countercurrent blood flow within the net (blood flowing in opposite directions. ) It exchanges heat, ions, or gases between vessel walls so that the two bloodstreams within the rete maintain a gradient with respect to temperature, or concentration of gases or solutes." [http://en.wikipedia.org/wiki/Rete_mirabile] +comment: GAT in FMA +synonym: "red body" RELATED [http://en.wikipedia.org/wiki/Rete_mirabile] +synonym: "red gland" RELATED [http://en.wikipedia.org/wiki/Rete_mirabile] +synonym: "rete mirabilia" RELATED [http://en.wikipedia.org/wiki/Rete_mirabile] +synonym: "rete mirabilis" RELATED [http://en.wikipedia.org/wiki/Rete_mirabile] +synonym: "retie mirabilia" RELATED PLURAL [http://en.wikipedia.org/wiki/Rete_mirabile] +synonym: "wonderful net" RELATED [http://en.wikipedia.org/wiki/Rete_mirabile] +xref: FMA:76728 +xref: Rete:mirabile +is_a: UBERON:0002049 ! vasculature + +[Term] +id: UBERON:0013219 +name: parotoid gland +def: "The parotoid gland (alternatively, paratoid gland) is an external skin gland on the back, neck, and shoulder of toads and some frogs and salamanders. It secretes a milky alkaloid substance to deter predators. The substance produced acts as a neurotoxin. Parotoid glands are sometimes said to be wart-like in appearance, though warts are abnormal growths caused by viral infections while parotoid glands are normal, healthy parts of the animals that bear them. The vague similarity in appearance, however, is the reason behind the mistaken belief that touching a toad causes warts." [http://en.wikipedia.org/wiki/Parotoid_gland] +synonym: "paratoid gland" RELATED [] +xref: Parotoid:gland +is_a: UBERON:0002530 ! gland + +[Term] +id: UBERON:0013220 +name: foramen of Panizza +def: "A hole with that connects the left and right aorta in animals of the order Crocodilia." [http://en.wikipedia.org/wiki/Foramen_of_Panizza] +xref: http://en.wikipedia.org/wiki/Foramen_of_Panizza +is_a: UBERON:0000464 ! anatomical space +relationship: connects UBERON:0000947 {minCardinality="2", maxCardinality="2"} ! aorta +relationship: connects UBERON:0000947 ! aorta +relationship: part_of UBERON:0000948 ! heart + +[Term] +id: UBERON:0013221 +name: caudofemoralis +def: "The caudofemoralis (from the latin cauda, tail and femur, thighbone) is a muscle found in the pelvic limb of mostly all animals possessing a tail, since it is a synapomorphy appeared on the Archosauria clade. It is thus found in felids (cats) and Mustela ('Weasels'), but also on crocodiles and birds." [http://en.wikipedia.org/wiki/Caudofemoralis] +synonym: "caudofemoralis muscle" EXACT [] +synonym: "M. caudofemoralis" EXACT [] +xref: EMAPA:36226 +xref: http://en.wikipedia.org/wiki/Caudofemoralis +is_a: UBERON:0003663 ! hindlimb muscle +relationship: has_muscle_insertion UBERON:0003464 ! hindlimb bone +relationship: has_muscle_origin UBERON:0035102 ! transverse process of caudal vertebra +relationship: present_in_taxon NCBITaxon:399537 {source="https://doi.org/10.1002/ar.22919"} +relationship: present_in_taxon NCBITaxon:8492 {source="Wikipedia"} +relationship: present_in_taxon NCBITaxon:8782 {source="Wikipedia"} +relationship: present_in_taxon NCBITaxon:9681 {source="Wikipedia"} + +[Term] +id: UBERON:0013222 +name: otic notch +def: "Otic notches are invagination in the posterior margin of the skull roof, one behind each orbit. Such notches are found in labyrinthodonts and some of their immediate ancestors, but not their reptilian descendants. The presence or absence of the otic notches is one of the traits used to separate the amniotes from the amphibian grade tetrapods." [http://en.wikipedia.org/wiki/Otic_notch] +xref: Otic:notch +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0003113 ! dermatocranium + +[Term] +id: UBERON:0013223 +name: alveolar gland +def: "In contrast to tubular glands, in the second main variety of gland, the secretory portion is enlarged and the lumen variously increased in size. These are termed alveolar glands (or saccular glands, or acinar glands, or acinous glands). Some sources draw a clear distinction between acinar and alveolar glands, based upon the shape of the lumen. A further complication in the case of the alveolar glands may occur in the form of still smaller saccular diverticuli growing out from the main sacculi. These are termed alveoli. The term 'tubulo-alveolar' (or 'tubulo-acinar', or 'compound tubulo-acinar', or 'compound tubulo-alveolar') is used to describe glands that start out as branched tubular, and branch further to terminate in alveoli. This type of gland is found in the salivary glands, esophagus, and mammary glands. The term 'racemose gland' is used to describe a 'compound alveolar gland' or 'compound acinar gland'." [http://en.wikipedia.org/wiki/Alveolar_gland] +synonym: "acinar gland" RELATED [http://en.wikipedia.org/wiki/Alveolar_gland] +synonym: "acinous gland" RELATED [http://en.wikipedia.org/wiki/Alveolar_gland] +synonym: "alveolar gland" RELATED [http://en.wikipedia.org/wiki/Alveolar_gland] +synonym: "saccular gland" RELATED [http://en.wikipedia.org/wiki/Alveolar_gland] +xref: Alveolar:gland +is_a: UBERON:0002530 {source="Wikipedia"} ! gland + +[Term] +id: UBERON:0013224 +name: Ciaccio's gland +def: "Ciaccio's glands are small tubular accessory lacrimal glands (glandulae lacrimales accessoriae) found in the lacrimal caruncle of the eyelid. They are located in the upper border of the tarsus, approximately in the middle between the extremities of the tarsal glands. Sometimes they are situated slightly above the tarsus. There are usually 2 to 5 of these glands in the upper eyelid, and their function is to produce tears which are secreted onto the surface of the conjunctiva. They are named after Italian anatomist Giuseppe Vincenzo Ciaccio (1824b1901), who described these glands in 1874. They are sometimes called Wolfring's glands after Polish ophthalmologist Emilj von Wolfring (1832-1906), who described them during the same time period as did Ciaccio. Another type of accessory lacrimal gland are Krause's glands, which are smaller, more numerous than Ciaccio's glands and are found along the superior and inferior fornices of the conjunctival sac." [http://en.wikipedia.org/wiki/Ciaccio's_glands] +synonym: "gland of Wolfring" EXACT [http://en.wikipedia.org/wiki/Ciaccio's_glands, ncithesaurus:Gland_of_Wolfring] +synonym: "gland of Wolfring and Ciacco" EXACT [] +synonym: "Wolfring's gland" EXACT [http://en.wikipedia.org/wiki/Ciaccio's_glands] +xref: Ciaccio's:glands +xref: http://www.snomedbrowser.com/Codes/Details/278361003 +xref: NCIT:C32680 +is_a: UBERON:0013226 ! accessory lacrimal gland +is_a: UBERON:0013229 ! eyelid gland +relationship: located_in UBERON:0014698 ! lacrimal caruncle + +[Term] +id: UBERON:0013226 +name: accessory lacrimal gland +def: "Serous gland with distended lumen. It includes the gland of Krause in the lacrimal sac and the gland of Wolfring on the inner surface of the upper eyelid. (NCI)" [ncithesaurus:Accessory_Lacrimal_Gland] +synonym: "glandulae lacrimales accessoriae" EXACT LATIN [] +xref: FMA:320425 +xref: http://linkedlifedata.com/resource/umls/id/C0266586 +xref: http://www.snomedbrowser.com/Codes/Details/278360002 +xref: NCIT:C74586 +xref: UMLS:C0266586 {source="ncithesaurus:Accessory_Lacrimal_Gland"} +is_a: UBERON:0001817 ! lacrimal gland + +[Term] +id: UBERON:0013227 +name: crypt of Henle +def: "Crypts of Henle are microscopic pockets found in scattered sections of the conjunctiva around the eyeball. They are responsible for secreting mucin, a proteinous substance that makes up the inner layer of tears. It coats the cornea to provide a hydrophilic layer that allows for even distribution of the tear film. The layer of mucin allows tears to glide evenly across the eye's surface[WP]." [http://en.wikipedia.org/wiki/Crypts_of_Henle] +synonym: "crypts of Henle" EXACT [http://en.wikipedia.org/wiki/Crypts_of_Henle] +synonym: "gland of Henle" EXACT [] +synonym: "Henle's gland" EXACT [http://en.wikipedia.org/wiki/Crypts_of_Henle] +xref: http://en.wikipedia.org/wiki/Crypts_of_Henle +xref: http://www.snomedbrowser.com/Codes/Details/278362005 +is_a: UBERON:0013226 ! accessory lacrimal gland + +[Term] +id: UBERON:0013228 +name: sweat gland of eyelid +def: "Glands of Moll, also known as ciliary glands, are modified apocrine sweat glands that are found on the margin of the eyelid. They are next to the base of the eyelashes, and anterior to the Meibomian glands within the distal eyelid margin. These glands are relatively large and tubular-shaped. The glands of Moll are named after Dutch oculist Jacob Anton Moll (1832-1914). Glands of Moll empty into the adjacent lashes. Glands of Moll and Zeis secrete lipid that adds to the superficial layer of the tear film, retarding evaporation. The glands of Moll are prone to infection and blockage of its duct with sebum and cell debris. Blockage of the gland's duct causes swelling which can manifest itself as a stye." [http://en.wikipedia.org/wiki/Gland_of_Moll] +synonym: "ciliary gland" EXACT [FMA:59159] +synonym: "ciliary gland of moll" EXACT [FMA:59159] +synonym: "ciliary sweat gland of eyelid" EXACT [FMA:59159] +synonym: "gland of Moll" EXACT [FMA:59159] +synonym: "Moll's gland" EXACT [FMA:59159] +xref: FMA:59159 +xref: http://en.wikipedia.org/wiki/Gland_of_Moll +xref: http://www.snomedbrowser.com/Codes/Details/280586002 +xref: NCIT:C32679 +is_a: UBERON:0000382 ! apocrine sweat gland +is_a: UBERON:0003605 ! eye skin gland +is_a: UBERON:0013229 ! eyelid gland +intersection_of: UBERON:0000382 ! apocrine sweat gland +intersection_of: part_of UBERON:0001711 ! eyelid + +[Term] +id: UBERON:0013229 +name: eyelid gland +def: "Any gland that is part of an eyelid. This includes sebaceous glands (Zeis gland, tarsal gland) and sweat glands (Moll's gland)." [http://orcid.org/0000-0002-6601-2165] +synonym: "gland of eyelid" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/280574000 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004859 ! eye gland +is_a: UBERON:0015152 ! gland of ocular region +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0001711 ! eyelid +relationship: part_of UBERON:0001711 ! eyelid + +[Term] +id: UBERON:0013230 +name: nictitans gland +def: "A gland producing tears in a third eyelid in the corner of each eye." [ncithesaurus:Gland_of_the_Third_Eyelid] +comment: Disease notes: Prolapse of the Nicititans Gland is also known as Cherry Eye +synonym: "gland of nictitating membrane" BROAD [] +synonym: "gland of the third eyelid" BROAD [ncithesaurus:Gland_of_the_Third_Eyelid] +synonym: "glandula palpebra tertia superficialis" RELATED LATIN [http://www.ncbi.nlm.nih.gov/pubmed/7559104] +synonym: "superficial gland of the nictitating membrane" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/7559104] +synonym: "superficial gland of the third eyelid" RELATED [ISBN:1118473523] +xref: NCIT:C77616 +is_a: UBERON:0013229 ! eyelid gland +is_a: UBERON:0015153 ! medial gland of ocular region +intersection_of: UBERON:0015153 ! medial gland of ocular region +intersection_of: produces UBERON:0022286 ! secretion of nictitans gland +relationship: part_of UBERON:0010207 ! nictitating membrane +relationship: present_in_taxon NCBITaxon:10047 {source="ISBN:1118473523"} +relationship: produces UBERON:0022286 ! secretion of nictitans gland + +[Term] +id: UBERON:0013231 +name: sebaceous gland of eyelid +def: "Any of the sebaceous glands that are in the eyelid. Examples: gland of Zeis (services eyelashes), gland of Meibom (tarsal gland - unconnected to eyelids)." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0003484 ! eye sebaceous gland +is_a: UBERON:0013229 ! eyelid gland +intersection_of: UBERON:0001821 ! sebaceous gland +intersection_of: part_of UBERON:0001711 ! eyelid + +[Term] +id: UBERON:0013232 +name: serous acinus +def: "The secretory unit of a serous gland. The acinar portion is composed of serous secreting cells." [http://orcid.org/0000-0002-6601-2165, http://www.siumed.edu/~dking2/intro/glands.htm] +synonym: "acinus of serous gland" EXACT [] +xref: FMA:86279 +is_a: UBERON:0011858 ! acinus of exocrine gland +intersection_of: UBERON:0009842 ! glandular acinus +intersection_of: part_of UBERON:0000409 ! serous gland +relationship: part_of UBERON:0000409 ! serous gland + +[Term] +id: UBERON:0013233 +name: supraorbital gland +def: "A lateral nasal gland that removes sodium chloride from the bloodstream." [http://en.wikipedia.org/wiki/Supraorbital_gland] +xref: Supraorbital:gland +is_a: UBERON:0004759 ! cranial salt gland +is_a: UBERON:0012278 ! gland of nasal mucosa + +[Term] +id: UBERON:0013234 +name: violet gland +def: "The violet gland or supracaudal gland is an important gland located on the upper surface of the tail of certain mammals, including European badgers and canids such as foxes, wolves the domestic dog, as well as the domestic cat. It is used for intra species signalling, scent marking, and contributes to the strong odor of foxes in particular." [http://en.wikipedia.org/wiki/Violet_gland] +synonym: "supracaudal gland" RELATED [] +xref: Violet:gland +is_a: UBERON:0011252 ! scent gland +relationship: part_of UBERON:0007812 ! post-anal tail + +[Term] +id: UBERON:0013235 +name: ventrum +def: "A major organism subdivisionthat is the entire part of an anatomical structure ventral to a horizontal plane and bounded on one side by the same horizontal plane." [BSPO:0000068, UBERONREF:0000006] +synonym: "front" BROAD [] +synonym: "front of body proper" EXACT [FMA:259204] +synonym: "ventral part of organism" EXACT [] +synonym: "ventral region" BROAD [] +synonym: "ventral region of organism" EXACT [] +xref: FMA:259204 +is_a: UBERON:0000475 ! organism subdivision + +[Term] +id: UBERON:0013236 +name: ventral trunk +def: "The subdivision of the trunk that overlaps with the ventrum." [http://orcid.org/0000-0002-6601-2165] +synonym: "anterolateral part of trunk" EXACT [FMA:25055] +synonym: "front of trunk" EXACT [FMA:25055] +synonym: "trunk front" EXACT [FMA:25055] +synonym: "trunk proper" EXACT [FMA:25055] +xref: FMA:25055 +is_a: UBERON:0009569 {source="FMA"} ! subdivision of trunk +relationship: part_of UBERON:0013235 ! ventrum + +[Term] +id: UBERON:0013237 +name: genital papilla of vulva +def: "The genital papilla is a part of female external genitalia not present in humans, which appears as a small, fleshy flab of tissue. The papilla covers the opening of the vagina." [http://en.wikipedia.org/wiki/Genital_papilla] +synonym: "genital papillae" RELATED PLURAL [] +synonym: "mammalian genital papilla" EXACT [] +xref: Genital:papilla +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0000997 ! mammalian vulva + +[Term] +id: UBERON:0013238 +name: future glans +is_a: UBERON:0005423 ! developing anatomical structure +union_of: UBERON:0013239 ! future glans penis +union_of: UBERON:0013240 ! future glans clitoris +relationship: has_potential_to_develop_into UBERON:0035651 ! glans +relationship: part_of UBERON:0011757 ! differentiated genital tubercle + +[Term] +id: UBERON:0013239 +name: future glans penis +def: "A future glans that is part of a male genital tubercle." [OBOL:automatic] +synonym: "glans of male genital tubercle" EXACT [] +xref: EMAPA:29252 +is_a: UBERON:0013238 ! future glans +intersection_of: UBERON:0013238 ! future glans +intersection_of: part_of UBERON:0006261 ! male genital tubercle +relationship: part_of UBERON:0006261 {source="EMAPA"} ! male genital tubercle + +[Term] +id: UBERON:0013240 +name: future glans clitoris +def: "A future glans that is part of a female genital tubercle." [OBOL:automatic] +synonym: "glans of female genital tubercle" EXACT [] +xref: EMAPA:19170 +is_a: UBERON:0013238 ! future glans +intersection_of: UBERON:0013238 ! future glans +intersection_of: part_of UBERON:0006233 ! female genital tubercle +relationship: part_of UBERON:0006233 {source="EMAPA"} ! female genital tubercle + +[Term] +id: UBERON:0013241 +name: embryonic urethral groove +def: "The precursor of the urethra" [http://orcid.org/0000-0002-6601-2165] +synonym: "sulcus urethralis primarius" EXACT LATIN [http://en.wikipedia.org/wiki/Urethral_groove] +synonym: "urethral groove" EXACT [] +synonym: "urethral sulcus" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/361531004 +xref: Urethral:groove +is_a: UBERON:0002050 ! embryonic structure +relationship: develops_from UBERON:0004876 {source="Wikipedia"} ! urogenital fold + +[Term] +id: UBERON:0013244 +name: vaginal plate +def: "The vaginal plate is a precursor to the inferior portion of the vagina. They form from sinovaginal bulbs." [http://en.wikipedia.org/wiki/Vaginal_plate] +xref: http://linkedlifedata.com/resource/umls/id/C1519928 +xref: NCIT:C34325 +xref: UMLS:C1519928 {source="ncithesaurus:Vaginal_Plate"} +xref: Vaginal:plate +is_a: UBERON:0002050 ! embryonic structure +relationship: develops_from UBERON:0013245 ! sinovaginal bulb +relationship: part_of UBERON:0000164 ! primitive urogenital sinus + +[Term] +id: UBERON:0013245 +name: sinovaginal bulb +def: "solid evaginations of the UG sinus that develops into a vaginal plate that which will will eventually canalize to form the inferior portion of the vagina." [https://orcid.org/0000-0002-6601-2165] +xref: http://linkedlifedata.com/resource/umls/id/C1519330 +xref: NCIT:C34297 +xref: UMLS:C1519330 {source="ncithesaurus:Sinovaginal_Bulb"} +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0000164 ! primitive urogenital sinus + +[Term] +id: UBERON:0013247 +name: male paramesonephric duct +def: "A epithelial tube that develops from a Mullerian duct in a male. Later degenerates." [http://orcid.org/0000-0002-6601-2165] +synonym: "degenerating mesonephric portion of male paramesonephric duct" RELATED [EMAPA:29161] +xref: EHDAA2:0001052 +xref: EMAPA:29161 +xref: EMAPA:35661 +is_a: UBERON:0003914 ! epithelial tube +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0012275 ! meso-epithelium +intersection_of: UBERON:0003914 ! epithelial tube +intersection_of: develops_from UBERON:0003890 ! Mullerian duct +intersection_of: part_of UBERON:0000079 ! male reproductive system +relationship: develops_from UBERON:0003890 {source="EHDAA2"} ! Mullerian duct +relationship: part_of UBERON:0000079 {source="EHDAA2"} ! male reproductive system + +[Term] +id: UBERON:0013248 +name: paradidymis +def: "A small collection of convoluted tubules, situated in front of the lower part of the cord above the head of the epididymis. These tubes are lined with columnar ciliated epithelium, and probably represent the remains of a part of the Wolffian body but are functionless and vestigial. The Wolffian body operates as a kidney (metanephros) in fishes and amphibians, but the corresponding tissue is co-opted to form parts of the male reproductive system in other classes of vertebrate. The paradidymis represents a remnant of an unused, atrophied part of the Wolffian body[WP,modified]." [http://en.wikipedia.org/wiki/Paradidymis] +synonym: "organ of Giraldes" EXACT [FMA:74055] +synonym: "organ of Giraldés" EXACT [] +synonym: "Waldeyer's organ" EXACT [FMA:74055] +xref: FMA:74055 +xref: http://en.wikipedia.org/wiki/Paradidymis +xref: http://www.snomedbrowser.com/Codes/Details/279643005 +is_a: UBERON:0003914 ! epithelial tube +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0012275 ! meso-epithelium +relationship: develops_from UBERON:0000083 {source="Wikipedia"} ! mesonephric tubule +relationship: part_of UBERON:0000079 ! male reproductive system + +[Term] +id: UBERON:0013249 +name: paroophoron +def: "A collection of a few scattered rudimentary tubules child, situated in the broad ligament between the epoophoron and the uterus." [http://en.wikipedia.org/wiki/Paroophoron] +synonym: "Kobelt's tubules" EXACT [FMA:18692] +synonym: "parooephoron" RELATED [http://en.wikipedia.org/wiki/Paroophoron] +synonym: "paroöphoron" RELATED [http://en.wikipedia.org/wiki/Paroophoron] +xref: FMA:18692 +xref: http://en.wikipedia.org/wiki/Paroophoron +is_a: UBERON:0003914 ! epithelial tube +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0006590 {source="FMA"} ! remnant of embryonic structure +is_a: UBERON:0012275 ! meso-epithelium +relationship: develops_from UBERON:0000083 {source="Wikipedia"} ! mesonephric tubule +relationship: part_of UBERON:0000474 ! female reproductive system + +[Term] +id: UBERON:0013250 +name: vesicular appendage of epoophoron +def: "In connection with the fimbriae of the uterine tube, or with the broad ligament close to them, there are frequently one or more small pedunculated vesicles. These are termed the vesicular appendages of the epoophoron." [http://en.wikipedia.org/wiki/Vesicular_appendages_of_epoophoron] +synonym: "appendage of epoophoron" RELATED [] +synonym: "appendage of epoöphoron" RELATED [] +synonym: "appendices vesiculosae" RELATED [http://en.wikipedia.org/wiki/Vesicular_appendages_of_epoophoron] +synonym: "appendices vesiculosae epoophori" RELATED LATIN [] +synonym: "appendix vesiculosus" EXACT [FMA:18696] +synonym: "female cystic vesicular appendage" EXACT [MA:0003241] +synonym: "hydatid of Morgagni" BROAD [FMA:18696] +synonym: "hydatid of Morgagni" BROAD [http://en.wikipedia.org/wiki/Hydatid_of_Morgagni] +synonym: "vesicular appendage of epoophoron" RELATED [FMA:18696] +synonym: "vesicular appendage of epoöphoron" RELATED [] +xref: EMAPA:18978 +xref: FMA:18696 +xref: http://en.wikipedia.org/wiki/Vesicular_appendages_of_epoophoron +xref: MA:0003241 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0006590 {source="FMA"} ! remnant of embryonic structure +relationship: develops_from UBERON:0003890 {notes="cranial end", source="Wikipedia"} ! Mullerian duct +relationship: part_of UBERON:0000474 ! female reproductive system + +[Term] +id: UBERON:0013262 +name: remnnant of ductus deferens +def: "remnant in a female of the portion of the embryonic mesonephric duct that develops into the ductus deferens in males." [http://www.medilexicon.com/medicaldictionary.php?t=98549] +synonym: "ductus deferens vestige" EXACT [FMA:76609] +synonym: "ductus deferens vestigialis" EXACT LATIN [] +synonym: "vestige of ductus deferens" EXACT [FMA:76609] +xref: FMA:76609 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0006590 {source="FMA"} ! remnant of embryonic structure +relationship: develops_from UBERON:0003890 {source="Wikipedia"} ! Mullerian duct +relationship: part_of UBERON:0000474 ! female reproductive system + +[Term] +id: UBERON:0013277 +name: remnant of processus vaginalis +def: "incompletely obliterated remnants of the vaginal process of the peritoneum remaining in the spermatic cord." [http://www.medilexicon.com/medicaldictionary.php?t=98550] +synonym: "processus vaginalis vestige" EXACT [FMA:77300] +synonym: "vestige of processus vaginalis" EXACT [FMA:77300] +xref: FMA:77300 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0006590 {source="FMA"} ! remnant of embryonic structure +relationship: develops_from UBERON:0005344 ! peritoneal vaginal process +relationship: part_of UBERON:0005352 ! spermatic cord + +[Term] +id: UBERON:0013278 +name: canal of Nuck +def: "A patent pouch of peritoneum extending into the labia majora of women. It is analogous to the processus vaginalis in males. The pouch accompanies the gubernaculum during development of the urinary and reproductive organs, more specifically during the descent of the ovaries, and normally obliterates." [http://en.wikipedia.org/wiki/Canal_of_Nuck] +synonym: "canal of nuck" RELATED [http://en.wikipedia.org/wiki/Canal_of_Nuck] +synonym: "nuck%27s canal" RELATED [http://en.wikipedia.org/wiki/Canal_of_Nuck] +synonym: "persistent processus vaginalis" RELATED [MP:0009217] +synonym: "processus vaginalis peritonei femininus" RELATED LATIN [http://en.wikipedia.org/wiki/Canal_of_Nuck] +xref: http://en.wikipedia.org/wiki/Canal_of_Nuck +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0006590 {source="cjm"} ! remnant of embryonic structure +relationship: develops_from UBERON:0005344 ! peritoneal vaginal process +relationship: part_of UBERON:0000474 ! female reproductive system + +[Term] +id: UBERON:0013279 +name: diaphysis of fibula +def: "A diaphysis that is part of a fibula[Automatically generated definition]." [http://en.wikipedia.org/wiki/Body_of_fibula, OBOL:automatic] +synonym: "body of fibula" EXACT [FMA:33738] +synonym: "corpus fibulae" EXACT [FMA:TA] +synonym: "fibula diaphysis" EXACT [FMA:33738] +synonym: "shaft of fibula" EXACT [FMA:33738] +xref: EMAPA:37892 {source="MA:th"} +xref: FMA:33738 +xref: http://en.wikipedia.org/wiki/Body_of_fibula +xref: http://www.snomedbrowser.com/Codes/Details/302528006 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004769 ! diaphysis +intersection_of: UBERON:0004769 ! diaphysis +intersection_of: part_of UBERON:0001446 ! fibula +relationship: part_of UBERON:0001446 ! fibula + +[Term] +id: UBERON:0013280 +name: diaphysis of tibia +def: "A diaphysis that is part of a tibia." [http://en.wikipedia.org/wiki/Body_of_tibia, OBOL:automatic] +synonym: "body of the tibia" RELATED [http://en.wikipedia.org/wiki/Body_of_tibia] +synonym: "body of tibia" EXACT [FMA:33125] +synonym: "corpus tibiae" EXACT [FMA:TA] +synonym: "shaft of tibia" EXACT [FMA:33125] +synonym: "shaft of tibia" RELATED [http://en.wikipedia.org/wiki/Body_of_tibia] +synonym: "tibial diaphysis" EXACT [FMA:33125] +xref: EMAPA:37770 {source="MA:th"} +xref: FMA:33125 +xref: http://en.wikipedia.org/wiki/Body_of_tibia +xref: http://www.snomedbrowser.com/Codes/Details/302525009 +xref: MA:0003049 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004769 ! diaphysis +intersection_of: UBERON:0004769 ! diaphysis +intersection_of: part_of UBERON:0000979 ! tibia +relationship: part_of UBERON:0000979 ! tibia + +[Term] +id: UBERON:0013397 +name: stratum argenteum of choroid +def: "A silver reflective layer in the outer choroid, adjacent to the sclera, frequently present in fish larvae but not as frequent in adults." [http://www.ncbi.nlm.nih.gov/pubmed/14738502] +synonym: "choroid stratum argenteum" EXACT [] +synonym: "stratum argenteum" BROAD [http://www.ncbi.nlm.nih.gov/pubmed/14738502] +is_a: UBERON:0000957 ! lamina +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0001776 ! optic choroid +relationship: present_in_taxon NCBITaxon:8065 + +[Term] +id: UBERON:0013398 +name: choroidal gland +def: "A gland that is part of a optic choroid." [OBOL:automatic] +comment: Requires review +is_a: UBERON:0001593 {source="FEED:rd"} ! venous plexus +is_a: UBERON:0002203 ! vasculature of eye +is_a: UBERON:0011362 ! cranial blood vasculature +relationship: part_of UBERON:0001776 ! optic choroid + +[Term] +id: UBERON:0013399 +name: blood vessel layer of choroid +synonym: "Haller's layer" NARROW [FMA:58435] +synonym: "lamina choroideae vasculosa" EXACT LATIN [FMA:58435, FMA:TA] +synonym: "lamina vasculosa (choroid)" EXACT [FMA:58435] +synonym: "lamina vasculosa of choroid" EXACT [FMA:58435] +synonym: "outer layer of choroid proper" EXACT [FMA:58435] +synonym: "Sattler's layer" NARROW [FMA:58435] +synonym: "vessel layer of choroid" EXACT [FMA:58435] +xref: FMA:58435 +is_a: UBERON:0004923 ! organ component layer +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: composed_primarily_of UBERON:0001981 ! blood vessel +relationship: part_of UBERON:0001776 {source="FMA"} ! optic choroid + +[Term] +id: UBERON:0013403 +name: asterion of skull +def: "The asterion is the point on the skull corresponding to the posterior end of the parietomastoid suture." [http://en.wikipedia.org/wiki/Asterion_(anatomy)] +synonym: "asterion" RELATED [http://en.wikipedia.org/wiki/Asterion_(anatomy)] +xref: Asterion:(anatomy) +xref: FMA:76625 +is_a: UBERON:0006983 {source="FMA"} ! anatomical point +relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull + +[Term] +id: UBERON:0013406 +name: bregma +def: "The bregma is the anatomical point on the skull at which the coronal suture is intersected perpendicularly by the sagittal suture." [http://en.wikipedia.org/wiki/Bregma] +xref: FMA:264776 +xref: http://en.wikipedia.org/wiki/Bregma +is_a: UBERON:0006983 {source="FMA"} ! anatomical point +relationship: connects UBERON:0002489 ! coronal suture +relationship: connects UBERON:0002492 ! sagittal suture +relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull + +[Term] +id: UBERON:0013411 +name: cranial cavity +def: "Anatomical cavity that is the lumen of the skull and contains the brain." [UBERON:cjm] +synonym: "cavitas cranii" EXACT LATIN [FMA:9644, FMA:TA] +synonym: "intracranial cavity" RELATED [http://en.wikipedia.org/wiki/Cranial_cavity] +synonym: "intracranial space" RELATED [http://en.wikipedia.org/wiki/Cranial_cavity] +xref: Cranial:cavity +xref: EMAPA:37497 {source="MA:th"} +xref: FMA:9644 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2806 +xref: http://linkedlifedata.com/resource/umls/id/C0230041 +xref: http://www.snomedbrowser.com/Codes/Details/264452006 +xref: MA:0003061 +xref: NCIT:C77638 +xref: UMLS:C0230041 {source="ncithesaurus:Cranial_Cavity"} +is_a: UBERON:0002553 ! anatomical cavity +intersection_of: UBERON:0002553 ! anatomical cavity +intersection_of: luminal_space_of UBERON:0003129 ! skull +relationship: luminal_space_of UBERON:0003129 ! skull +relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull + +[Term] +id: UBERON:0013412 +name: crotaphion +def: "The crotaphion refers to two points on the skull at the tips of the greater wing of sphenoid bone. It is near the pterion." [http://en.wikipedia.org/wiki/Crotaphion] +xref: http://en.wikipedia.org/wiki/Crotaphion +is_a: UBERON:0006983 ! anatomical point +relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull + +[Term] +id: UBERON:0013417 +name: epicranium +def: "The Epicranium is the medical term for the collection of structures covering the cranium. It consists of the muscles, aponeurosis, and skin." [http://en.wikipedia.org/wiki/Epicranium] +xref: http://en.wikipedia.org/wiki/Epicranium +xref: http://www.snomedbrowser.com/Codes/Details/362625008 +is_a: UBERON:0034921 ! multi organ part structure +relationship: adjacent_to UBERON:0003129 {source="Wikipedia"} ! skull +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0013420 +name: groove for sigmoid sinus +def: "Groove for Sigmoid Sinus is a groove in the posterior cranial fossa." [http://en.wikipedia.org/wiki/Groove_for_sigmoid_sinus] +xref: FMA:57122 +xref: http://en.wikipedia.org/wiki/Groove_for_sigmoid_sinus +is_a: UBERON:4200230 ! surface of bone +relationship: part_of UBERON:0008788 ! posterior cranial fossa + +[Term] +id: UBERON:0013422 +name: infratemporal fossa +def: "The infratemporal fossa is an irregularly shaped cavity, situated below and medial to the zygomatic arch. Boundaries defined by: anteriorly, by the infratemporal surface of the maxilla and the ridge which descends from its zygomatic process posteriorly, by the articular tubercle of the temporal and the spinal angularis of the sphenoid superiorly, by the greater wing of the sphenoid below the infratemporal crest, and by the under surface of the temporal squama, containing the foramen ovale, which transmits the mandibular branch of the trigeminal nerve, and the foramen spinosum, which transmits the middle meningeal artery inferiorly, by the medial pterygoid muscle attaching to the mandible medially, by the lateral pterygoid plate laterally, by the ramus of mandible, which contains the mandibular foramen, leading to the mandibular canal through which the inferior alveolar nerve passes. This also contains the lingula, a triangular piece of bone that overlies the mandibular foramen antero-medially. Finally, the mylohyoid groove descends obliquely transmitting the mylohyoid nerve the only motor branch of the anterior division of the trigeminal nerve." [http://en.wikipedia.org/wiki/Infratemporal_fossa] +synonym: "fossa infratemporalis" RELATED [http://en.wikipedia.org/wiki/Infratemporal_fossa] +synonym: "infratemporal" RELATED [http://en.wikipedia.org/wiki/Infratemporal_fossa] +synonym: "pterygomaxillary fossa" RELATED [http://en.wikipedia.org/wiki/Infratemporal_fossa] +xref: FMA:75308 +xref: http://www.snomedbrowser.com/Codes/Details/260616009 +xref: Infratemporal:fossa +is_a: UBERON:0004704 ! bone fossa +relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull + +[Term] +id: UBERON:0013423 +name: jugal point +def: "The jugal point is the point at the anterior end of the upper border of the zygomatic arch where the masseteric and maxillary edges meet at an angle." [http://en.wikipedia.org/wiki/Jugal_point] +xref: Jugal:point +is_a: UBERON:0006983 ! anatomical point +relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull + +[Term] +id: UBERON:0013424 +name: anatomical point connecting sagittal and lambdoidal sutures +def: "The occipital angle is rounded and corresponds with the point of meeting of the sagittal and lambdoidal sutures-a point which is termed the lambda (after the Greek letter of the same name); in the fetus this part of the skull is membranous, and is called the posterior fontanelle." [http://en.wikipedia.org/wiki/Lambda_(anatomy)] +synonym: "lambda" BROAD [http://en.wikipedia.org/wiki/Lambda_(anatomy)] +synonym: "posterior fontanelle" RELATED [http://en.wikipedia.org/wiki/Lambda_(anatomy)] +xref: FMA:264773 +xref: Lambda:(anatomy) +is_a: UBERON:0006983 ! anatomical point +intersection_of: UBERON:0006983 ! anatomical point +intersection_of: connects UBERON:0002491 ! lambdoid suture +intersection_of: connects UBERON:0002492 ! sagittal suture +relationship: connects UBERON:0002491 ! lambdoid suture +relationship: connects UBERON:0002492 ! sagittal suture +relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull + +[Term] +id: UBERON:0013426 +name: obelion +def: "The point of the sagittal suture which is on a level with the parietal foramina." [http://en.wikipedia.org/wiki/Obelion] +xref: FMA:264774 +xref: http://en.wikipedia.org/wiki/Obelion +is_a: UBERON:0006983 ! anatomical point +relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull + +[Term] +id: UBERON:0013427 +name: occipital bun +def: "A prominent bulge, or projection, of the occipital bone at the back of the skull[WP]." [http://en.wikipedia.org/wiki/Occipital_bun] +xref: Occipital:bun +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0001676 ! occipital bone +relationship: present_in_taxon NCBITaxon:63221 + +[Term] +id: UBERON:0013428 +name: ophryon +def: "The ophryon is the point in the forehead just above the optic foramen, or eyesocket, and glabella." [http://en.wikipedia.org/wiki/Ophryon] +xref: FMA:284930 +xref: http://en.wikipedia.org/wiki/Ophryon +is_a: UBERON:0006983 ! anatomical point +relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull + +[Term] +id: UBERON:0013436 +name: porion +def: "The porion is the point on the human skull located at the upper margin of each ear canal (external auditory meatus, external acoustic meatus). It underlies the tragus. The anatomical landmark has significance in biological anthropology and craniometry." [http://en.wikipedia.org/wiki/Porion] +xref: FMA:264711 +xref: http://en.wikipedia.org/wiki/Porion +is_a: UBERON:0006983 ! anatomical point +relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull + +[Term] +id: UBERON:0013442 +name: postorbital process +def: "The Postorbital Process marks the rear, upper edge of the eye socket and is a projection from the frontal bone." [http://en.wikipedia.org/wiki/Postorbital_process] +xref: Postorbital:process +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000209 ! tetrapod frontal bone + +[Term] +id: UBERON:0013445 +name: pterygomaxillary fissure +def: "The pterygomaxillary fissure is a fissure of the human skull. It is vertical, and descends at right angles from the medial end of the inferior orbital fissure; it is a triangular interval, formed by the divergence of the maxilla from the pterygoid process of the sphenoid. It connects the infratemporal with the pterygopalatine fossa, and transmits the terminal part of the maxillary artery. Alveolar branches of the maxillary nerve go from the pterygopalatine fossa to the infratemporal region via this fissure. In older texts, the pterygomaxillary fissure is sometimes called the pterygopalatine fissure." [http://en.wikipedia.org/wiki/Pterygomaxillary_fissure] +xref: FMA:76627 +xref: Pterygomaxillary:fissure +is_a: UBERON:0006800 {source="FMA"} ! anatomical line +relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull + +[Term] +id: UBERON:0013447 +name: sagittal crest +def: "A ridge of bone running lengthwise along the midline of the top of the skull of many mammalian and reptilian skulls and serves as an attachment site for the temporailis muscle[WP,modified]." [http://en.wikipedia.org/wiki/Sagittal_crest] +synonym: "sagittal ridge" RELATED [] +xref: Sagittal:crest +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0003113 ! dermatocranium + +[Term] +id: UBERON:0013448 +name: sagittal keel +def: "The Sagittal keel (torus) is a thickening of bone on part or all of the midline of the frontal bone, or parietal bones where they meet along the sagittal suture, or on both bones.." [http://en.wikipedia.org/wiki/Sagittal_keel] +synonym: "sagittal torus" RELATED [] +xref: Sagittal:keel +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0003113 ! dermatocranium + +[Term] +id: UBERON:0013450 +name: simian shelf +def: "A bony buttress on the inner surface of the foremost part of the ape mandible, functioning to reinforce the mandible." [http://web.archive.org/web/20060830160800/www.anth.ucsb.edu/glossary/glossary.html] +xref: Simian:shelf +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0001684 ! mandible + +[Term] +id: UBERON:0013454 +name: spheno-maxillary fossa +def: "The speno-maxillary fossa is a small triangular space situated at the angle of the junction of the spheno-maxillary and pterygo-maxillary fissures, and placed beneath the apex of the orbit. It is formed above by the under surface of the body of the sphenoid and by the orbital process of the palate bone." [http://en.wikipedia.org/wiki/Spheno-maxillary_fossa] +xref: http://linkedlifedata.com/resource/umls/id/C1519450 +xref: NCIT:C33584 +xref: Spheno-maxillary:fossa +xref: UMLS:C1519450 {source="ncithesaurus:Sphenomaxillary_Fossa"} +is_a: UBERON:0004704 ! bone fossa +relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull + +[Term] +id: UBERON:0013455 +name: spheno-petrosal fissure +def: "The sphenopetrosal fissure (or sphenopetrosal suture) is the cranial suture between the sphenoid bone and the petrous portion of the temporal bone. It is in the middle cranial fossa." [http://en.wikipedia.org/wiki/Sphenopetrosal_fissure] +synonym: "fissura sphenopetrosa" EXACT [FMA:TA] +synonym: "sphenopetrosal fissure" EXACT [FMA:75038] +xref: FMA:75038 +xref: Sphenopetrosal:fissure +is_a: UBERON:0006800 ! anatomical line +intersection_of: UBERON:0006800 ! anatomical line +intersection_of: connects UBERON:0001677 ! sphenoid bone +intersection_of: connects UBERON:0001694 ! petrous part of temporal bone +relationship: connects UBERON:0001677 ! sphenoid bone +relationship: connects UBERON:0001694 ! petrous part of temporal bone +relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull + +[Term] +id: UBERON:0013459 +name: stephanion +def: "The point where the upper temporal line cuts the coronal suture is named the stephanion." [http://en.wikipedia.org/wiki/Stephanion] +xref: FMA:264723 +xref: http://en.wikipedia.org/wiki/Stephanion +is_a: UBERON:0006983 ! anatomical point +relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull + +[Term] +id: UBERON:0013460 +name: suprainiac fossa +alt_id: UBERON:0013470 +def: "The suprainiac fossa is an elliptic depression on the occiput above the superior nuchal line, or inion." [http://en.wikipedia.org/wiki/Suprainiac_fossa] +xref: Suprainiac:fossa +is_a: UBERON:0004704 ! bone fossa +relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull +relationship: present_in_taxon NCBITaxon:63221 {source="Neanderthal:anatomy"} + +[Term] +id: UBERON:0013462 +name: sylvian point +def: "The Sylvian point is the point on the human skull nearest the Sylvian fissure and is located about 30 millimeters behind the Zygomatic process of frontal bone." [http://en.wikipedia.org/wiki/Sylvian_point] +xref: FMA:49458 +xref: Sylvian:point +is_a: UBERON:0006983 ! anatomical point +intersection_of: UBERON:0006983 ! anatomical point +intersection_of: part_of UBERON:0003129 ! skull +intersection_of: superficial_to UBERON:0002721 ! lateral sulcus +relationship: part_of UBERON:0003129 ! skull +relationship: superficial_to UBERON:0002721 ! lateral sulcus + +[Term] +id: UBERON:0013463 +name: temporal fossa +def: "The temporal fossa is a shallow depression on the side of the skull bounded by the temporal lines and terminating below the level of the zygomatic arch." [http://en.wikipedia.org/wiki/Temporal_fossa] +xref: FMA:75307 +xref: http://linkedlifedata.com/resource/umls/id/C0230010 +xref: http://www.snomedbrowser.com/Codes/Details/137157009 +xref: NCIT:C33742 +xref: Temporal:fossa +xref: UMLS:C0230010 {source="ncithesaurus:Temporal_Fossa"} +is_a: UBERON:0004704 ! bone fossa +relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull + +[Term] +id: UBERON:0013466 +name: obsolete zygomasseteric system +def: "The zygomasseteric system (or zygomasseteric structure) in rodents is the anatomical arrangement of the masseter muscle of the jaw and the zygomatic arch of the skull. The anteroposterior or propalinal (front-to-back) motion of the rodent jaw is enabled by an extension of the zygomatic arch and the division of the masseter into three distinct parts. The main types are described as protrogomorphous, sciuromorphous, hystricomorphous, and myomorphous." [http://en.wikipedia.org/wiki/Zygomasseteric_system] +comment: obsoleted as it did not represent a structure +is_obsolete: true +consider: Wikipedia:Zygomasseteric_system + +[Term] +id: UBERON:0013468 +name: zygomatic fossa +def: "The Zygomatic Fossa is an irregularly shaped cavity, situated below and on the inner side of the zygoma; bounded, in front, by the zygomatic surface of the superior maxillary bone and the ridge which descends from its malar process; behind, by the posterior border of the external pterygoid plate and the eminentia articularis; above, by the pterygoid ridge on the outer surface of the great wing of the sphenoid and the under part of the squamous portion of the temporal; below by the alveolar border of the superior maxilla; internally, by the external pterygoid plate; and externally, by the zygomatic arch ramus of the lower jaw. It contains the lower part of the temporal, the External and Internal pterygoid muscles, the internal maxillary artery and vein, and inferior maxillary nerve and their branches. At its upper and inner part may be observed two fissures, the spheno-maxillary and pterygo-maxillary." [http://en.wikipedia.org/wiki/Zygomatic_fossa] +xref: NCIT:C33898 +xref: Zygomatic:fossa +is_a: UBERON:0008789 ! cranial fossa +relationship: part_of UBERON:0002500 ! zygomatic arch + +[Term] +id: UBERON:0013469 +name: external occipital protuberance +def: "Near the middle of the occipital squama is the external occipital protuberance, and extending lateralward from it on either side is the superior nuchal line, and above this the faintly marked highest nuchal line. It is less pronounced in females. The inion is the highest point of the external occipital protuberance. a projection on the external surface of the squamous part of the occipital bone in the midline" [http://en.wikipedia.org/wiki/External_occipital_protuberance] +synonym: "inion" RELATED [http://en.wikipedia.org/wiki/Inion] +xref: FMA:75752 +xref: http://en.wikipedia.org/wiki/External_occipital_protuberance +xref: http://www.snomedbrowser.com/Codes/Details/139582005 +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0007170 {source="FMA"} ! squamous part of occipital bone + +[Term] +id: UBERON:0013471 +name: retromolar space +def: "The retromolar space or retromolar gap is a space at the rear of a mandible, between the back of the last molar and the anterior edge of the ascending ramus where it crosses the alveolar margin.[WP]" [http://en.wikipedia.org/wiki/Retromolar_space] +synonym: "retromolar gap" EXACT [http://en.wikipedia.org/wiki/Retromolar_space] +xref: Retromolar:space +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0001684 ! mandible +relationship: present_in_taxon NCBITaxon:63221 + +[Term] +id: UBERON:0013472 +name: upper esophagus +def: "The upper one third of esophagus in which the muscle layer is composed of muscle cells of the striated type." [ncithesaurus:Upper_Third_of_the_Esophagus] +synonym: "proximal part of esophagus" RELATED [] +synonym: "upper third of esophagus" RELATED [] +xref: http://linkedlifedata.com/resource/umls/id/C0227187 +xref: http://www.snomedbrowser.com/Codes/Details/276801001 +xref: NCIT:C12253 +xref: UMLS:C0227187 {source="ncithesaurus:Upper_Third_of_the_Esophagus"} +is_a: UBERON:0004921 ! subdivision of digestive tract +relationship: part_of UBERON:0001043 ! esophagus + +[Term] +id: UBERON:0013473 +name: lower esophagus +def: "The lower one third of the esophagus in which the muscle layer is composed of muscle cells predominantly of the smooth type." [ncithesaurus:Lower_Third_of_the_Esophagus] +synonym: "distal part of esophagus" RELATED [] +synonym: "lower third of esophagus" RELATED [] +xref: http://linkedlifedata.com/resource/umls/id/C0227191 +xref: http://www.snomedbrowser.com/Codes/Details/362129001 +xref: NCIT:C12255 +xref: UMLS:C0227191 {source="ncithesaurus:Lower_Third_of_the_Esophagus"} +is_a: UBERON:0004921 ! subdivision of digestive tract +relationship: part_of UBERON:0001043 ! esophagus + +[Term] +id: UBERON:0013474 +name: middle part of esophagus +def: "The middle one third of the esophagus in which the muscle layer is composed of muscle cells of the striated and smooth types." [ncithesaurus:Middle_Third_of_the_Esophagus] +synonym: "middle third of esophagus" RELATED [] +xref: http://linkedlifedata.com/resource/umls/id/C0227189 +xref: http://www.snomedbrowser.com/Codes/Details/276802008 +xref: NCIT:C12254 +xref: UMLS:C0227189 {source="ncithesaurus:Middle_Third_of_the_Esophagus"} +is_a: UBERON:0004921 ! subdivision of digestive tract +relationship: part_of UBERON:0001043 ! esophagus + +[Term] +id: UBERON:0013475 +name: gustatory gland +def: "A serous salivary gland which resides adjacent to the moats surrounding the circumvallate papillae in the posterior one-third of the tongue, anterior to the terminal sulcus." [http://en.wikipedia.org/wiki/Von_Ebner's_gland] +subset: pheno_slim +synonym: "posterior deep lingual gland" EXACT [PMCID:PMC2667924] +synonym: "posterior lingual serous gland" EXACT [MGI:anna] +synonym: "von Ebner gland" EXACT [http://en.wikipedia.org/wiki/Von_Ebner's_gland] +synonym: "von Ebner's gland" EXACT [http://en.wikipedia.org/wiki/Von_Ebner's_gland] +xref: FMA:293448 +xref: http://en.wikipedia.org/wiki/Von_Ebner's_gland +is_a: UBERON:0000409 ! serous gland +is_a: UBERON:0001044 ! saliva-secreting gland +is_a: UBERON:0003409 ! gland of tongue +relationship: part_of UBERON:0010033 ! posterior part of tongue + +[Term] +id: UBERON:0013476 +name: dermal layer of tongue +def: "." [http://www.ncbi.nlm.nih.gov/pubmed/23153189] +synonym: "tongue (dermal layer)" EXACT [] +is_a: UBERON:0004923 ! organ component layer +relationship: part_of UBERON:0001723 ! tongue + +[Term] +id: UBERON:0013477 +name: blowhole +def: "A hole at the top of a cetacean's head through which the animal breathes air" [http://en.wikipedia.org/wiki/Blowhole_(anatomy)] +synonym: "blowhole slit" NARROW [] +xref: Blowhole:(anatomy) +is_a: UBERON:0005928 ! external naris + +[Term] +id: UBERON:0013478 +name: cecal tonsil +def: "A thickened round patch of lymphoid tissue located at the ileocecal junction adjacent to the sacculus rotundus." [ISBN:0824754077] +synonym: "caecal tonsil" EXACT [] +synonym: "cecal GALT" RELATED [] +xref: http://www.snomedbrowser.com/Codes/Details/14239003 +is_a: UBERON:0001962 ! gut-associated lymphoid tissue +intersection_of: UBERON:0001961 ! mucosa-associated lymphoid tissue +intersection_of: part_of UBERON:0001153 ! caecum +relationship: part_of UBERON:0000314 ! cecum mucosa + +[Term] +id: UBERON:0013479 +name: lung endothelium +def: "A blood vessel endothelium that is part of a lung [Automatically generated definition]." [OBOL:automatic] +synonym: "respiratory endothelium" RELATED [BTO:0004128] +xref: BTO:0004128 +xref: CALOHA:TS-0573 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0000115 ! lung epithelium +is_a: UBERON:0004702 ! respiratory system blood vessel endothelium +intersection_of: UBERON:0004638 ! blood vessel endothelium +intersection_of: part_of UBERON:0002048 ! lung + +[Term] +id: UBERON:0013481 +name: crypt of Lieberkuhn of ileum +def: "An intestinal crypt that is located in the ileum." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "ileal crypt" EXACT [] +synonym: "ileal crypt of Lieberkuhn" EXACT [] +synonym: "ileal intestinal crypt" EXACT [] +xref: EMAPA:37839 {source="MA:th"} +xref: FMA:269061 +is_a: UBERON:0001241 ! crypt of Lieberkuhn of small intestine +intersection_of: UBERON:0001983 ! crypt of Lieberkuhn +intersection_of: part_of UBERON:0002116 ! ileum +relationship: part_of UBERON:0008344 {source="FMA"} ! intestinal villus of ileum + +[Term] +id: UBERON:0013482 +name: crypt of Lieberkuhn of duodenum +def: "An intestinal crypt that is located in the duodenum." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "duodenal crypt" EXACT [] +synonym: "duodenal crypt of Lieberkuhn" EXACT [] +xref: EMAPA:37838 {source="MA:th"} +xref: FMA:269063 +is_a: UBERON:0001241 ! crypt of Lieberkuhn of small intestine +intersection_of: UBERON:0001983 ! crypt of Lieberkuhn +intersection_of: part_of UBERON:0002114 ! duodenum +relationship: part_of UBERON:0008342 {source="FMA"} ! intestinal villus of duodenum + +[Term] +id: UBERON:0013483 +name: crypt of Lieberkuhn of jejunum +def: "An intestinal crypt that is located in the jejunum." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "jejunal crypt" EXACT [] +synonym: "jejunal crypt of Lieberkuhn" EXACT [] +xref: EMAPA:37840 {source="MA:th"} +xref: FMA:269065 +is_a: UBERON:0001241 ! crypt of Lieberkuhn of small intestine +intersection_of: UBERON:0001983 ! crypt of Lieberkuhn +intersection_of: part_of UBERON:0002115 ! jejunum +relationship: part_of UBERON:0008343 {source="FMA"} ! intestinal villus of jejunum + +[Term] +id: UBERON:0013485 +name: crypt of Lieberkuhn of colon +def: "An intestinal crypt that is located in the colon. The colonic crypts of Lieberkühn are straight and unbranched and lined largely with goblet cells." [http://orcid.org/0000-0002-6601-2165] +synonym: "colonic crypt" EXACT [] +synonym: "colonic crypt of Lieberkuhn" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/19447003 +is_a: UBERON:0001984 ! crypt of Lieberkuhn of large intestine +intersection_of: UBERON:0001983 ! crypt of Lieberkuhn +intersection_of: part_of UBERON:0001155 ! colon +relationship: part_of UBERON:0000317 ! colonic mucosa + +[Term] +id: UBERON:0013486 +name: crypt of Lieberkuhn of appendix +def: "An intestinal crypt that is located in the appendix." [http://orcid.org/0000-0002-6601-2165] +synonym: "appendiceal crypt" EXACT [] +synonym: "appendiceal crypt of Lieberkuhn" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/21512007 +is_a: UBERON:0013485 ! crypt of Lieberkuhn of colon +intersection_of: UBERON:0001983 ! crypt of Lieberkuhn +intersection_of: part_of UBERON:0001154 ! vermiform appendix +relationship: part_of UBERON:0004989 ! mucosa of appendix + +[Term] +id: UBERON:0013487 +name: epidermal ridge of digit +def: "The grooves in the outermost layer of skin on the palms of the hands and soles of the feet where sweat glands open." [ncithesaurus:Epidermal_Ridges] +synonym: "dermatoglyph" RELATED [https://ghr.nlm.nih.gov/handbook/traits/fingerprints] +synonym: "epidermal ridge" RELATED [] +synonym: "fingerprint" RELATED [] +synonym: "friction ridge" RELATED [] +synonym: "plantar print" RELATED [MESH:E05.256] +xref: http://linkedlifedata.com/resource/umls/id/C1516920 +xref: NCIT:C32524 +xref: UMLS:C1516920 {source="ncithesaurus:Epidermal_Ridges"} +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:3000981 ! limb external integument structure +relationship: part_of UBERON:0001003 ! skin epidermis +relationship: part_of UBERON:0002544 ! digit +relationship: present_in_taxon NCBITaxon:9443 + +[Term] +id: UBERON:0013488 +name: panniculus adiposus +def: "The panniculus adiposus is the fatty layer of the subcutaneous tissues, superficial to a deeper vestigial layer of muscle, the panniculus carnosus. An example is the Fascia of Camper. Another example is the superficial cervical fascia[WP]" [http://en.wikipedia.org/wiki/Panniculus_adiposus] +synonym: "panniculus adiposus group" EXACT [] +synonym: "subcutaneous fat" RELATED [http://en.wikipedia.org/wiki/Panniculus_adiposus] +xref: Panniculus:adiposus +is_a: UBERON:0002190 ! subcutaneous adipose tissue + +[Term] +id: UBERON:0013489 +name: superficial cervical fascia +def: "Superficial cervical fascia is a thin layer of subcutaneous connective tissue that lies between the dermis of the skin and the deep cervical fascia. It contains the platysma, cutaneous nerves, blood, and lymphatic vessels. It also contains a varying amount of fat, which is its distinguishing characteristic." [http://en.wikipedia.org/wiki/Superficial_cervical_fascia] +comment: It is considered by some to be a part of the Panniculus adiposus, and not true fascia[WP] +synonym: "lamina superficialis fasciae cervicalis" EXACT LATIN [FMA:57805, FMA:TA] +synonym: "superficial cervical fascia" EXACT [FMA:57805] +synonym: "superficial layer of cervical fascia" EXACT [FMA:57805] +synonym: "superficial layer of deep cervical fascia" EXACT [FMA:57805] +xref: FMA:57805 +xref: http://en.wikipedia.org/wiki/Superficial_cervical_fascia +xref: http://www.snomedbrowser.com/Codes/Details/175208005 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0013491 ! cervical fascia +relationship: has_part UBERON:0001013 ! adipose tissue +relationship: immediately_deep_to UBERON:0002067 ! dermis +relationship: part_of UBERON:0013488 {notes="contested", source="Wikipedia"} ! panniculus adiposus + +[Term] +id: UBERON:0013490 +name: deep cervical fascia +def: "The deep cervical fascia (or fascia colli in older texts) lies under cover of the Platysma, and invests the neck; it also forms sheaths for the carotid vessels, and for the structures situated in front of the vertebral column. Its attachment to the hyoid bone prevents the formation of a dewlap. The investing portion of the fascia is attached behind to the ligamentum nucha and to the spinous process of the seventh cervical vertebra. The 'alar fascia' is a portion of deep cervical fascia." [http://en.wikipedia.org/wiki/Deep_cervical_fascia] +synonym: "deep cervical fascia" EXACT [FMA:21791] +synonym: "deep fascia of neck" EXACT [FMA:21791] +synonym: "fascia coli" RELATED [http://en.wikipedia.org/wiki/Deep_cervical_fascia] +synonym: "fascia colli" RELATED [http://en.wikipedia.org/wiki/Deep_cervical_fascia] +synonym: "investing cervical fascia" EXACT [FMA:21791] +synonym: "investing layer of cervical fascia" EXACT [FMA:21791] +xref: FMA:21791 +xref: http://en.wikipedia.org/wiki/Deep_cervical_fascia +is_a: UBERON:0013491 ! cervical fascia +relationship: immediately_deep_to UBERON:0005467 ! platysma + +[Term] +id: UBERON:0013491 +name: cervical fascia +def: "Any fascia tissue that is part of the neck region." [http://en.wikipedia.org/wiki/Cervical_fascia, http://orcid.org/0000-0002-6601-2165] +synonym: "fascia of neck" EXACT [] +xref: Cervical:fascia +xref: FMA:76866 +xref: http://www.snomedbrowser.com/Codes/Details/361906006 +is_a: UBERON:0003568 ! neck connective tissue +is_a: UBERON:0008982 ! fascia +intersection_of: UBERON:0008982 ! fascia +intersection_of: part_of UBERON:0000974 ! neck + +[Term] +id: UBERON:0013492 +name: prevertebral cervical fascia +def: "The prevertebral fascia (or prevertebral layer of cervical fascia) is a fascia in the neck." [http://en.wikipedia.org/wiki/Prevertebral_fascia] +synonym: "lamina prevertebralis (fascia cervicalis)" EXACT [FMA:46560] +synonym: "lamina prevertebralis fasciae cervicalis" EXACT LATIN [FMA:46560, FMA:TA] +synonym: "prevertebral fascia" EXACT [FMA:46560] +synonym: "prevertebral layer" RELATED [http://en.wikipedia.org/wiki/Prevertebral_fascia] +synonym: "prevertebral layer of cervical fascia" EXACT [FMA:46560] +synonym: "prevertebral layer of cervical fascia" RELATED [http://en.wikipedia.org/wiki/Prevertebral_fascia] +synonym: "prevertebral layer of deep cervical fascia" EXACT [FMA:46560] +xref: FMA:46560 +xref: http://www.snomedbrowser.com/Codes/Details/175407002 +xref: Prevertebral:fascia +is_a: UBERON:0013491 ! cervical fascia + +[Term] +id: UBERON:0013493 +name: abdominal fascia +def: "A fascia that is part of a abdomen." [OBOL:automatic] +synonym: "endo-abdominopelvic fascia" EXACT [FMA:19841] +synonym: "fascia of abdomen" EXACT [FMA:19841] +xref: Abdominal:fascia +xref: FMA:19841 +xref: http://www.snomedbrowser.com/Codes/Details/306708007 +is_a: UBERON:0003567 ! abdomen connective tissue +is_a: UBERON:0008982 ! fascia +intersection_of: UBERON:0008982 ! fascia +intersection_of: part_of UBERON:0000916 ! abdomen + +[Term] +id: UBERON:0013494 +name: keratin-coated spine +def: "A modified strand of hair covered in a keratin coat, as found in porcupines and hedgehogs." [https://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0001037 ! strand of hair +is_a: UBERON:0008260 ! spine appendage + +[Term] +id: UBERON:0013495 +name: barbed keratin-coated spine +def: "A keratin-coated spine that is tipped with a barb." [https://orcid.org/0000-0002-6601-2165] +synonym: "porcupine quill" RELATED [] +synonym: "quill" EXACT [] +is_a: UBERON:0013494 ! keratin-coated spine +relationship: present_in_taxon NCBITaxon:10135 +relationship: present_in_taxon NCBITaxon:30649 + +[Term] +id: UBERON:0013496 +name: unbarbed keratin-coated spine +def: "A keratin-coated spine that is lacks a barbed end." [https://orcid.org/0000-0002-6601-2165] +synonym: "hedgehog spine" EXACT [] +synonym: "spine" BROAD [] +is_a: UBERON:0013494 ! keratin-coated spine +relationship: present_in_taxon NCBITaxon:9363 + +[Term] +id: UBERON:0013497 +name: muscularis orbicularis +def: "A fringe of muscle running along the periphery of the panniculus." [https://orcid.org/0000-0002-6601-2165] +synonym: "orbicularis" RELATED [] +synonym: "orbicularis muscle" EXACT [] +is_a: UBERON:0002036 ! striated muscle tissue +relationship: part_of UBERON:0002416 ! integumental system +relationship: present_in_taxon NCBITaxon:9363 + +[Term] +id: UBERON:0013498 +name: vestibulo-cochlear VIII ganglion complex +synonym: "vestibular VIII ganglion complex" RELATED [EHDAA2:0004313] +synonym: "vestibulocochlear ganglion complex" EXACT [] +synonym: "vestibulocochlear VIII ganglion complex" EXACT [] +xref: EHDAA2:0004313 +xref: EMAPA:17570 +is_a: UBERON:0001714 ! cranial ganglion +intersection_of: UBERON:0001714 ! cranial ganglion +intersection_of: extends_fibers_into UBERON:0001648 ! vestibulocochlear nerve +relationship: extends_fibers_into UBERON:0001648 ! vestibulocochlear nerve + +[Term] +id: UBERON:0013499 +name: glossopharyngeal-vagus IX-X preganglion complex +synonym: "glossopharyngeal-vagus preganglion complex" RELATED [EMAPA:16662] +xref: EMAPA:16662 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0001714 {source="cjm"} ! cranial ganglion + +[Term] +id: UBERON:0013500 +name: glossopharyngeal-vagus IX-X ganglion complex +synonym: "glossopharyngeal-vagus ganglion complex" RELATED [EMAPA:16796] +xref: EMAPA:16796 +is_a: UBERON:0001714 {source="cjm"} ! cranial ganglion +relationship: develops_from UBERON:0013499 ! glossopharyngeal-vagus IX-X preganglion complex + +[Term] +id: UBERON:0013501 +name: cloacal sphincter +def: "A sphincter muscle that is part of a cloaca." [OBOL:automatic] +comment: the muscles of the cloacal sphincter specialise into the perineal muscles in mammals (Gegenbaur, 1883; Popowsky, 1899; Nishi, 1938). +synonym: "sphincter cloacae" EXACT PLURAL [] +xref: http://linkedlifedata.com/resource/umls/id/C1516658 +xref: NCIT:C34129 +xref: UMLS:C1516658 {source="ncithesaurus:Cloacal_Sphincter"} +is_a: UBERON:0004590 ! sphincter muscle +is_a: UBERON:0014783 ! cloacal muscle +intersection_of: UBERON:0004590 ! sphincter muscle +intersection_of: part_of UBERON:0000162 ! cloaca + +[Term] +id: UBERON:0013502 +name: 5th arch mesenchyme +def: "A mesenchyme that is part of a pharyngeal arch 5." [OBOL:automatic] +synonym: "5th branchial arch mesenchyme" RELATED [] +synonym: "5th pharyngeal arch mesenchyme" EXACT [VHOG:0001052] +synonym: "pharyngeal arch 5 mesenchyme" RELATED [] +is_a: UBERON:0009494 ! pharyngeal arch mesenchymal region +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0003116 ! pharyngeal arch 5 +relationship: part_of UBERON:0003116 ! pharyngeal arch 5 + +[Term] +id: UBERON:0013503 +name: caudal vertebra cartilage element +alt_id: UBERON:0013517 +def: "A caudal vertebra endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +synonym: "coccygeal vertebra cartilage element" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "coccygeal vertebral cartilage condensation group" EXACT [EHDAA2:0000260] +synonym: "tail vertebral cartilage condensation" EXACT [EMAPA:18044] +xref: EHDAA2:0000260 +xref: EMAPA:18044 +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0018142 ! caudal vertebra endochondral element +is_a: UBERON:2001457 ! postcranial axial cartilage +intersection_of: UBERON:0018142 ! caudal vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0013504 ! caudal vertebra pre-cartilage condensation +relationship: has_potential_to_develop_into UBERON:0001095 ! caudal vertebra + +[Term] +id: UBERON:0013504 +name: caudal vertebra pre-cartilage condensation +alt_id: UBERON:0013518 +def: "A caudal vertebra endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +synonym: "coccygeal vertebra pre-cartilage condensation" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "tail vertebral pre-cartilage condensation" EXACT [EMAPA:18045] +xref: EMAPA:18045 +is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0018142 ! caudal vertebra endochondral element +intersection_of: UBERON:0018142 ! caudal vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0013505 +name: cervical vertebra cartilage element +def: "A cervical vertebra endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +synonym: "cervical vertebral cartilage condensation group" EXACT [EHDAA2:0000240] +xref: EHDAA2:0000240 +is_a: UBERON:0003601 ! neck cartilage +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015007 ! cervical vertebra endochondral element +is_a: UBERON:2001457 ! postcranial axial cartilage +intersection_of: UBERON:0015007 ! cervical vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0013506 ! cervical vertebra pre-cartilage condensation +relationship: has_potential_to_develop_into UBERON:0002413 ! cervical vertebra + +[Term] +id: UBERON:0013506 +name: cervical vertebra pre-cartilage condensation +def: "A cervical vertebra endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015007 ! cervical vertebra endochondral element +intersection_of: UBERON:0015007 ! cervical vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0013507 +name: thoracic vertebra cartilage element +def: "A thoracic vertebra endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +synonym: "thoracic vertebral cartilage condensation group" EXACT [EHDAA2:0002014] +xref: EHDAA2:0002014 +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015008 ! thoracic vertebra endochondral element +is_a: UBERON:2001457 ! postcranial axial cartilage +intersection_of: UBERON:0015008 ! thoracic vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0013508 ! thoracic vertebra pre-cartilage condensation +relationship: has_potential_to_develop_into UBERON:0002347 ! thoracic vertebra + +[Term] +id: UBERON:0013508 +name: thoracic vertebra pre-cartilage condensation +def: "A thoracic vertebra endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015008 ! thoracic vertebra endochondral element +intersection_of: UBERON:0015008 ! thoracic vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0013509 +name: lumbar vertebra cartilage element +def: "A lumbar vertebra endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +synonym: "lumbar vertebral cartilage condensation group" EXACT [EHDAA2:0001038] +xref: EHDAA2:0001038 +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015009 ! lumbar vertebra endochondral element +is_a: UBERON:2001457 ! postcranial axial cartilage +intersection_of: UBERON:0015009 ! lumbar vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0013510 ! lumbar vertebra pre-cartilage condensation +relationship: has_potential_to_develop_into UBERON:0002414 ! lumbar vertebra + +[Term] +id: UBERON:0013510 +name: lumbar vertebra pre-cartilage condensation +def: "A lumbar vertebra endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015009 ! lumbar vertebra endochondral element +intersection_of: UBERON:0015009 ! lumbar vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0013511 +name: ambiens muscle +def: "A long muscle found in reptiles that originates on the ilium and crosses the acetabulum and the knee joint before being inserted on the tibia." [ISBN:0073040584] +synonym: "ambiens" RELATED [] +is_a: UBERON:0003663 ! hindlimb muscle +relationship: has_muscle_insertion UBERON:0000979 ! tibia +relationship: has_muscle_origin UBERON:0001273 ! ilium + +[Term] +id: UBERON:0013512 +name: row of feathers +synonym: "feather row" EXACT [] +synonym: "feather tract" EXACT [] +is_a: UBERON:0011810 ! collection of feathers +is_a: UBERON:0034926 ! anatomical row +intersection_of: UBERON:0034926 ! anatomical row +intersection_of: has_member UBERON:0000022 ! feather + +[Term] +id: UBERON:0013513 +name: anal pterya +def: "One of two rows of feathers encircling the cloaca" [http://caiquesite.com/glossary.htm] +synonym: "anal pteryla" RELATED [] +synonym: "cloacal circlet" RELATED [http://caiquesite.com/glossary.htm] +synonym: "undertail covert" RELATED [] +is_a: UBERON:0013512 ! row of feathers +intersection_of: UBERON:0013512 ! row of feathers +intersection_of: surrounds UBERON:0000162 ! cloaca +relationship: surrounds UBERON:0000162 ! cloaca + +[Term] +id: UBERON:0013514 +name: space surrounding organism +def: "The space that surrounds an organism." [https://orcid.org/0000-0002-6601-2165] +synonym: "external to organism" EXACT [] +synonym: "outside of body" EXACT [] +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: surrounds UBERON:0000468 ! multicellular organism +relationship: surrounds UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0013515 +name: subdivision of oviduct +def: "A section through the tube or network of tubes that connects the ovaries to the outside of the body." [http://orcid.org/0000-0002-6601-2165] +subset: non_informative +synonym: "subdivision of fallopian tube" NARROW [FMA:18302] +synonym: "subdivision of oviduct" EXACT [FMA:18302] +synonym: "subdivision of uterine tube" EXACT [] +synonym: "uterine tube zone" EXACT [FMA:18302] +synonym: "zone of uterine tube" EXACT [FMA:18302] +xref: FMA:18302 +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0013522 ! subdivision of tube +intersection_of: UBERON:0013522 ! subdivision of tube +intersection_of: subdivision_of UBERON:0000993 ! oviduct +relationship: part_of UBERON:0000993 ! oviduct +relationship: subdivision_of UBERON:0000993 ! oviduct + +[Term] +id: UBERON:0013516 +name: uterine tube magnum +def: "The second segment of the oviduct. This is where most of the egg white is added to the egg as it moves down the duct." [http://caiquesite.com/glossary.htm] +synonym: "magnum" BROAD [] +synonym: "magnum of oviduct" EXACT [] +synonym: "magnum of uterine tube" EXACT [] +is_a: UBERON:0013515 {source="cjm"} ! subdivision of oviduct + +[Term] +id: UBERON:0013519 +name: avian uterine tube isthmus +def: "The third segment of the oviduct. At this point in the egg's journey down the oviduct, the membranes form and calcification starts." [http://caiquesite.com/glossary.htm] +synonym: "isthmus of oviduct" EXACT [] +synonym: "isthmus of uterine tube" EXACT [] +xref: http://en.wikipedia.org/wiki/Isthmus_of_uterine_tube +is_a: UBERON:0013515 {source="cjm"} ! subdivision of oviduct + +[Term] +id: UBERON:0013522 +name: subdivision of tube +is_a: UBERON:0000064 ! organ part +relationship: has_part UBERON:0000060 ! anatomical wall +relationship: has_part UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0000025 ! tube +relationship: subdivision_of UBERON:0000025 ! tube + +[Term] +id: UBERON:0013523 +name: lateral vaginal canal +def: "One of two lateral tracts connecting a uterus to a common median tract separated from the median vagina via ureters which prevent their fusion. Found in marsupials" [https://orcid.org/0000-0002-6601-2165] +synonym: "lateral vagina" EXACT [] +synonym: "lateral vaginae" EXACT PLURAL [] +is_a: UBERON:0000996 ! vagina +is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0000996 ! vagina +intersection_of: connected_to UBERON:0013524 ! median vaginal canal +intersection_of: in_lateral_side_of UBERON:0003975 ! internal female genitalia +relationship: channel_for UBERON:0001968 {notes="the lateral vaginae serve as transport for the sperm"} ! semen +relationship: connected_to UBERON:0013524 ! median vaginal canal +relationship: in_lateral_side_of UBERON:0003975 ! internal female genitalia + +[Term] +id: UBERON:0013524 +name: median vaginal canal +def: "A median canal in the reproductive system of marsupials that connects the uteri to a common tract, joining with the two lateral vaginas. Connects the uterine openings directly with the urogenital sinus" [https://orcid.org/0000-0002-6601-2165] +synonym: "central pseudovaginal canal" EXACT [] +synonym: "central vagina" EXACT [] +synonym: "median pseudovaginal canal" EXACT [] +synonym: "median vagina" EXACT [] +synonym: "midline birth canal" RELATED [] +is_a: UBERON:0000996 ! vagina +is_a: UBERON:0004111 ! anatomical conduit +intersection_of: UBERON:0000996 ! vagina +intersection_of: connected_to UBERON:0013523 ! lateral vaginal canal +intersection_of: intersects_midsagittal_plane_of UBERON:0003975 ! internal female genitalia +relationship: channel_for UBERON:0000922 ! embryo +relationship: connected_to UBERON:0013523 ! lateral vaginal canal +relationship: intersects_midsagittal_plane_of UBERON:0003975 ! internal female genitalia + +[Term] +id: UBERON:0013525 +name: stomach lumen +def: "The anatomical space that is enclosed by a stomach." [http://orcid.org/0000-0002-6601-2165] +synonym: "cavity of stomach" EXACT [FMA:14585] +synonym: "gastric cavity" RELATED [FMA:14585] +xref: EMAPA:18395 +xref: FMA:14585 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0000945 ! stomach +relationship: luminal_space_of UBERON:0000945 ! stomach +relationship: part_of UBERON:0000945 ! stomach +relationship: part_of UBERON:0011565 {source="FMA"} ! lumen of gastrointestinal system + +[Term] +id: UBERON:0013526 +name: otocyst lumen +def: "A anatomical cavity that is part of a ear vesicle." [OBOL:automatic] +synonym: "lumen of otocyst" EXACT [EMAPA:25363] +xref: EHDAA2:0004121 +xref: EMAPA:25363 +is_a: UBERON:0002553 ! anatomical cavity +is_a: UBERON:0007473 {source="EHDAA2"} ! lumen of epithelial sac +intersection_of: UBERON:0002553 ! anatomical cavity +intersection_of: luminal_space_of UBERON:0003051 ! ear vesicle +relationship: develops_from UBERON:0006273 {source="EHDAA2"} ! otic pit +relationship: luminal_space_of UBERON:0003051 ! ear vesicle +relationship: part_of UBERON:0003051 {source="EHDAA2"} ! ear vesicle + +[Term] +id: UBERON:0013527 +name: pectoral flipper tubercle +def: "A bump or swelling adorining the head and leading edge of a pectoral flipper, associated with the multiple joints and terminal phalanges as found in the multiple phalanges of the humpback whale" [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0005813 ! tubercle +relationship: part_of UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0013528 +name: Brodmann (1909) area 11 +def: "Brodmann area 11 is one of Brodmann's cytologically defined regions of the brain. It is involved in planning, reasoning, and decision making." [http://en.wikipedia.org/wiki/Brodmann_area_11] +synonym: "area 11 of Brodmann" EXACT [FMA:68608] +synonym: "area 11 of Brodmann" RELATED [http://en.wikipedia.org/wiki/Brodmann_area_11] +synonym: "area 11 of Brodmann (guenon)" RELATED [NeuroNames:1036] +synonym: "area 11 of Brodmann-1909" EXACT [BIRNLEX:1742] +synonym: "area orbitalis interna" RELATED LATIN [NeuroNames:1036] +synonym: "area praefrontalis" BROAD [BIRNLEX:1742] +synonym: "B09-11" BROAD ABBREVIATION [BIRNLEX:1742, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-11" EXACT [BIRNLEX:1742] +synonym: "BA11" RELATED [FMA:68608] +synonym: "Brodmann (1909) area 11" EXACT [BIRNLEX:1742] +synonym: "Brodmann area 11, prefrontal" EXACT [BIRNLEX:1742] +synonym: "brodmann's area 11" RELATED [NeuroNames:1036] +synonym: "medial orbital area" EXACT [FMA:68608] +synonym: "prefrontal area 11" RELATED [http://en.wikipedia.org/wiki/Brodmann_area_11] +xref: BIRNLEX:1742 +xref: Brodmann_area:11 +xref: FMA:68608 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1036 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1036 {source="BIRNLEX:1742"} +xref: http://linkedlifedata.com/resource/umls/id/C1272533 +xref: UMLS:C1272533 {source="BIRNLEX:1742"} +is_a: UBERON:0013529 {source="FMA"} ! Brodmann area + +[Term] +id: UBERON:0013529 +name: Brodmann area +def: "A segmentation of the cerebral cortex on the basis of cytoarchitecture as described in Brodmann-1905, Brodmann-1909 and Brodmann-10. Maps for several species were presented. NeuroNames includes only areas in the human and in Old World monkeys. Of the latter, Brodmann studied representatives of several species including guenons (one Cercopithecus mona, one Cercocebus torquatus, and one Cercopithecus otherwise unspecified), which are all closely related African species, and one macaque (Macaca mulatta) an Asian species (Brodmann-1905). The legend to the summary map in Brodmann-1909 ascribes the areas simply to Cercopithecus. Brodmann referenced the areas by name and number. The same area number in humans and monkeys did not necessarily refer to topologically or cytoarchitecturally homologous structures. In NeuroNames the standard term for human areas consists of the English translation of Brodmann's Latin name followed by the number he assigned, e.g., agranular frontal area 6; the standard terms for monkey areas are in the format: area 6 of Brodmann-1909. He mapped a portion of areas limited to the banks of sulci, e.g., area 3 of Brodmann-1909 (Brodmann-1909) onto the adjacent, visible surface. This accounts for the fact that some areas appear larger on his surface map than on maps of other authors, e.g., area 3 of Vogts-1919. (Adapted from NeuroNames)" [BIRNLEX:1731] +synonym: "Brodmann parcellation scheme region" RELATED [BIRNLEX:1731] +synonym: "Brodmann partition scheme region" RELATED [BIRNLEX:1731] +synonym: "Brodmann's areas" RELATED PLURAL [BIRNLEX:1731] +xref: BAMS:VTM +xref: BIRNLEX:1731 +xref: Brodmann:area +xref: FMA:68596 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1032 {source="tgbugs"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1032 +xref: http://www.snomedbrowser.com/Codes/Details/384717008 +xref: NCIT:C94868 +xref: WikipediaCategory:Brodmann_areas +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000956 {source="FMA", source="Wikipedia"} ! cerebral cortex + +[Term] +id: UBERON:0013531 +name: retrosplenial region +def: "The retrosplenial region is a brain area and part of the cingulate cortex. It is defined by Brodmann area 26, Brodmann area 29 and the Brodmann area 30." [http://en.wikipedia.org/wiki/Retrosplenial_region] +subset: pheno_slim +synonym: "retrosplenial area" RELATED [BAMS:RSP] +synonym: "retrosplenial cortex" RELATED [http://en.wikipedia.org/wiki/Retrosplenial_region] +synonym: "retrosplenial cortex" RELATED [BTO:0003977] +xref: BAMS:RSP +xref: BTO:0003977 +xref: DHBA:10324 +xref: DHBA:266441669 +xref: DMBA:16093 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2436 +xref: MBA:254 +xref: Retrosplenial:region +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0003027 {source="BTO"} ! cingulate cortex + +[Term] +id: UBERON:0013533 +name: Brodmann (1909) area 2 +synonym: "area 2 of Brodmann" EXACT [FMA:68598] +synonym: "area 2 of Brodmann (guenon)" RELATED [NeuroNames:1033] +synonym: "area 2 of Brodmann-1909" EXACT [BIRNLEX:1733] +synonym: "area postcentralis caudalis" EXACT [BIRNLEX:1733] +synonym: "B09-2" BROAD ABBREVIATION [BIRNLEX:1733, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-2" EXACT [BIRNLEX:1733] +synonym: "BA2" RELATED [FMA:68598] +synonym: "Brodmann (1909) area 2" EXACT [BIRNLEX:1733] +synonym: "Brodmann area 2" EXACT [FMA:68598] +synonym: "Brodmann area 2, caudal postcentral" EXACT [BIRNLEX:1733] +synonym: "Brodmann's area 2" EXACT [FMA:68598] +synonym: "caudal postcentral area" EXACT [FMA:68598] +synonym: "postcentral gyrus" RELATED [http://en.wikipedia.org/wiki/Brodmann_area_2] +xref: BIRNLEX:1733 +xref: Brodmann_area:2 +xref: FMA:68598 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1033 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1033 {source="BIRNLEX:1733"} +xref: http://linkedlifedata.com/resource/umls/id/C1272524 +xref: UMLS:C1272524 {source="BIRNLEX:1733"} +is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area + +[Term] +id: UBERON:0013535 +name: Brodmann (1909) area 4 +def: "The term area 4 of Brodmann-1909 refers to a cytoarchitecturally defined portion of the frontal lobe of the guenon. It is located predominantly in the precentral gyrus. Brodmann-1909 regarded it as topographically and cytoarchitecturally homologous to the human gigantopyramidal area 4 and noted that it occupies a much greater fraction of the frontal lobe in the monkey than in the human. Distinctive features (Brodmann-1905): the cortex is unusually thick; the layers are not distinct; the cells are relatively sparsely distributed; giant pyramidal (Betz) cells are present in the internal pyramidal layer (V); lack of an internal granular layer (IV) such that the boundary between the external pyramidal layer (III) and the internal pyramidal layer (V) is indistinct; lack of a distinct external granular layer (II); a gradual transition from the multiform layer (VI) to the subcortical white matter." [BIRNLEX:1735] +synonym: "area 4 of Brodmann" EXACT [FMA:68600] +synonym: "area 4 of Brodmann (guenon)" RELATED [NeuroNames:1014] +synonym: "area 4 of Brodmann-1909" EXACT [BIRNLEX:1735] +synonym: "area gigantopyramidalis" EXACT [BIRNLEX:1735] +synonym: "B09-4" BROAD ABBREVIATION [BIRNLEX:1735, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-4" EXACT [BIRNLEX:1735] +synonym: "BA4" RELATED [FMA:68600] +synonym: "Brodmann (1909) area 4" EXACT [BIRNLEX:1735] +synonym: "Brodmann area 4" EXACT [FMA:68600] +synonym: "Brodmann area 4, gigantopyramidal" EXACT [BIRNLEX:1735] +synonym: "Brodmann's area 4" EXACT [FMA:68600] +synonym: "giant pyramidal area" EXACT [FMA:68600] +xref: BIRNLEX:1735 +xref: Brodmann_area:4 +xref: FMA:68600 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1014 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1014 {source="BIRNLEX:1735"} +xref: http://linkedlifedata.com/resource/umls/id/C1272526 +xref: UMLS:C1272526 {source="BIRNLEX:1735"} +is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area +relationship: part_of UBERON:0001384 {seeAlso="https://github.com/obophenotype/uberon/issues/515"} ! primary motor cortex + +[Term] +id: UBERON:0013538 +name: Brodmann (1909) area 7 +def: "Brodmann area 7 is one of Brodmann's cytologically defined regions of the brain. It is involved in locating objects in space. It serves as a point of convergence between vision and proprioception to determine where objects are in relation to parts of the body." [http://en.wikipedia.org/wiki/Brodmann_area_7] +synonym: "area 7 of Brodmann" EXACT [FMA:68604] +synonym: "area 7 of Brodmann-1909" EXACT [BIRNLEX:1738] +synonym: "area parietalis superior" EXACT LATIN [http://en.wikipedia.org/wiki/Brodmann_area_7] +synonym: "area parietalis superior" EXACT [BIRNLEX:1738] +synonym: "B09-7" BROAD ABBREVIATION [BIRNLEX:1738, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-7" EXACT [BIRNLEX:1738] +synonym: "BA7" RELATED [FMA:68604] +synonym: "Brodmann (1909) area 7" EXACT [BIRNLEX:1738] +synonym: "Brodmann area 7" EXACT [FMA:68604] +synonym: "Brodmann area 7, superior parietal" EXACT [BIRNLEX:1738] +synonym: "gyrus F3" RELATED LATIN [NeuroNames:85] +synonym: "gyrus frontalis tertius" RELATED LATIN [NeuroNames:85] +synonym: "regio subfrontalis" RELATED LATIN [NeuroNames:85] +xref: BIRNLEX:1738 +xref: Brodmann_area:7 +xref: FMA:68604 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=85 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=85 {source="BIRNLEX:1738"} +xref: http://linkedlifedata.com/resource/umls/id/C1272529 +xref: UMLS:C1272529 {source="BIRNLEX:1738"} +is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area + +[Term] +id: UBERON:0013539 +name: Brodmann (1909) area 8 +def: "Brodmann area 8 is one of Brodmann's cytologically defined regions of the brain. It is involved in planning complex movements." [http://en.wikipedia.org/wiki/Brodmann_area_8] +synonym: "area 8 of Brodmann" EXACT [FMA:68605] +synonym: "area 8 of Brodmann (guenon)" RELATED [NeuroNames:1034] +synonym: "area 8 of Brodmann-1909" EXACT [BIRNLEX:1739] +synonym: "area frontalis intermedia" EXACT [BIRNLEX:1739] +synonym: "area frontalis intermedia" EXACT LATIN [http://en.wikipedia.org/wiki/Brodmann_area_8] +synonym: "B09-8" BROAD ABBREVIATION [BIRNLEX:1739, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-8" EXACT [BIRNLEX:1739] +synonym: "BA8" RELATED [FMA:68605] +synonym: "Brodmann (1909) area 8" EXACT [BIRNLEX:1739] +synonym: "Brodmann area 8" EXACT [FMA:68605] +synonym: "Brodmann area 8, intermediate frontal" EXACT [BIRNLEX:1739] +synonym: "brodmann's area 8" RELATED [NeuroNames:1034] +synonym: "intermediate frontal area" EXACT [FMA:68605] +xref: BIRNLEX:1739 +xref: Brodmann_area:8 +xref: FMA:68605 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1034 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1034 {source="BIRNLEX:1739"} +xref: http://linkedlifedata.com/resource/umls/id/C1272530 +xref: UMLS:C1272530 {source="BIRNLEX:1739"} +is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area + +[Term] +id: UBERON:0013540 +name: Brodmann (1909) area 9 +def: "." [http://en.wikipedia.org/wiki/Brodmann_area_9] +synonym: "area 9 of Brodmann" EXACT [FMA:68606] +synonym: "area 9 of Brodmann (guenon)" RELATED [NeuroNames:1024] +synonym: "area 9 of Brodmann-1909" EXACT [BIRNLEX:1740] +synonym: "area frontalis granularis" EXACT LATIN [http://en.wikipedia.org/wiki/Brodmann_area_9] +synonym: "area frontalis granularis" EXACT [BIRNLEX:1740] +synonym: "B09-9" BROAD ABBREVIATION [BIRNLEX:1740, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-9" EXACT [BIRNLEX:1740] +synonym: "BA9" RELATED [FMA:68606] +synonym: "Brodmann (1909) area 9" EXACT [BIRNLEX:1740] +synonym: "Brodmann area 9" EXACT [FMA:68606] +synonym: "Brodmann area 9, granular frontal" EXACT [BIRNLEX:1740] +synonym: "brodmann's area 9" RELATED [NeuroNames:1024] +synonym: "granular frontal area" EXACT [FMA:68606] +xref: BIRNLEX:1740 +xref: Brodmann_area:9 +xref: FMA:68606 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1024 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1024 {source="BIRNLEX:1740"} +xref: http://linkedlifedata.com/resource/umls/id/C1272531 +xref: UMLS:C1272531 {source="BIRNLEX:1740"} +is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area +relationship: part_of UBERON:0009834 {source="BGEE:Ann"} ! dorsolateral prefrontal cortex + +[Term] +id: UBERON:0013541 +name: Brodmann (1909) area 10 +def: "Brodmann area 10, or BA10, is part of the frontal cortex in the human brain. BA10 encompasses the most anterior part of the frontal cortex, known as the frontopolar region. This area is believed to play a part in strategic processes involved in memory retrieval and executive function. This area is also called frontopolar area 10, and it refers to a subdivision of the cytoarchitecturally defined frontal region of cerebral cortex. It occupies the most rostral portions of the superior frontal gyrus and the middle frontal gyrus. In humans, on the medial aspect of the hemisphere it is bounded ventrally by the superior rostral sulcus (H). It does not extend as far as the cingulate sulcus. Cytoarchitecturally it is bounded dorsally by the granular frontal area 9, caudally by the middle frontal area 46, and ventrally by the orbital area 47 and by the rostral area 12 or, in an early version of Brodmann's cortical map (Brodmann-1909), the prefrontal Brodmann area 11-1909." [http://en.wikipedia.org/wiki/Brodmann_area_10] +synonym: "area 10 of Brodmann" EXACT [FMA:68607] +synonym: "area 10 of Brodmann-1909" EXACT [BIRNLEX:1741] +synonym: "area frontopolaris" EXACT [BIRNLEX:1741] +synonym: "B09-10" BROAD ABBREVIATION [BIRNLEX:1741, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-10" EXACT [BIRNLEX:1741] +synonym: "BA10" RELATED [FMA:68607] +synonym: "Brodmann (1909) area 10" EXACT [BIRNLEX:1741] +synonym: "Brodmann area 10" EXACT [FMA:68607] +synonym: "Brodmann area 10, frontoplar" EXACT [BIRNLEX:1741] +synonym: "lateral orbital area" EXACT [FMA:68607] +synonym: "rostral sulcus" RELATED [NeuroNames:76] +synonym: "sulcus rectus" RELATED LATIN [NeuroNames:76] +synonym: "sulcus rectus (Krieg)" RELATED LATIN [NeuroNames:76] +xref: BAMS:ros +xref: BIRNLEX:1741 +xref: Brodmann_area:10 +xref: DHBA:146034836 +xref: FMA:68607 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=76 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=76 {source="BIRNLEX:1741"} +xref: http://linkedlifedata.com/resource/umls/id/C1272532 +xref: UMLS:C1272532 {source="BIRNLEX:1741"} +is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area +relationship: part_of UBERON:0000451 ! prefrontal cortex + +[Term] +id: UBERON:0013543 +name: Brodmann (1909) area 12 +alt_id: UBERON:0013530 +def: "Brodmann area 12 is a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. It occupies the most rostral portion of the frontal lobe. Brodmann-1909 did not regard it as homologous, either topographically or cytoarchitecturally, to rostral area 12 of the human. Distinctive features (Brodmann-1905): a quite distinct internal granular layer (IV) separates slender pyramidal cells of the external pyramidal layer (III) and the internal pyramidal layer (V); the multiform layer (VI) is expanded, contains widely dispersed spindle cells and merges gradually with the underlying cortical white matter; all cells, including the pyramidal cells of the external and internal pyramidal layers are inordinately small; the internal pyramidal layer (V) also contains spindle cells in groups of two to five located close to its border with the internal granular layer (IV)." [http://en.wikipedia.org/wiki/Brodmann_area_12] +synonym: "area 12 of Brodmann" EXACT [FMA:68609] +synonym: "area 12 of Brodmann-1909" EXACT [BIRNLEX:1743] +synonym: "area praefrontalis" BROAD [BIRNLEX:1743] +synonym: "area praefrontalis" EXACT [BIRNLEX:1743] +synonym: "B09-12" BROAD ABBREVIATION [BIRNLEX:1743, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-12" EXACT [BIRNLEX:1743] +synonym: "BA12" RELATED [FMA:68609] +synonym: "Brodmann (1909) area 12" EXACT [BIRNLEX:1743] +synonym: "Brodmann area 12" EXACT [FMA:68609] +synonym: "Brodmann area 12, prefrontal" EXACT [BIRNLEX:1743] +synonym: "frontopolar area" EXACT [FMA:68609] +synonym: "sulcus fronto-orbitalis" RELATED LATIN [NeuroNames:77] +xref: BIRNLEX:1743 +xref: Brodmann_area:12 +xref: FMA:68609 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=77 {source="BIRNLEX:1743"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=77 +xref: http://linkedlifedata.com/resource/umls/id/C1272534 +xref: UMLS:C1272534 {source="BIRNLEX:1743"} +is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area + +[Term] +id: UBERON:0013544 +name: Brodmann (1909) area 13 +def: "Brodmann area 13 is a subdivision of the cerebral cortex as defined on the guenon monkey and on the basis of cytoarchitecture. Brodmann area 13 is found in humans, however it seems to act as a bridge between the lateral and medial layers of the brain. Thus it is sometimes misidentified as not being a Brodmann area." [http://en.wikipedia.org/wiki/Brodmann_area_13] +synonym: "area 13 of Brodmann" RELATED [FMA:68610] +synonym: "area 13 of Brodmann-1909" EXACT [BIRNLEX:1744] +synonym: "B09-13" BROAD ABBREVIATION [BIRNLEX:1744, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-13" EXACT [BIRNLEX:1744] +synonym: "BA13" RELATED [FMA:68610] +synonym: "Brodmann (1909) area 13" EXACT [BIRNLEX:1744] +synonym: "Brodmann area 13" EXACT [FMA:68610] +xref: BIRNLEX:1744 +xref: Brodmann_area:13 +xref: FMA:68610 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1009 +xref: OldNeuroNames:379923166 {source="BIRNLEX:1744"} +is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area + +[Term] +id: UBERON:0013545 +name: Brodmann (1909) area 14 +def: "Brodmann Area 14 is one of Brodmann's subdivisions of the cerebral cortex in the brain. It was defined by Brodmann in the guenon monkey. No equivalent structure exists in humans." [http://en.wikipedia.org/wiki/Brodmann_area_14] +synonym: "area 14 of Brodmann" RELATED [FMA:68611] +synonym: "area 14 of Brodmann-1909" EXACT [BIRNLEX:1745] +synonym: "B09-14" BROAD ABBREVIATION [BIRNLEX:1745, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-14" EXACT [BIRNLEX:1745] +synonym: "BA14" RELATED [FMA:68611] +synonym: "Brodmann (1909) area 14" EXACT [BIRNLEX:1745] +synonym: "Brodmann area 14" EXACT [FMA:68611] +xref: BIRNLEX:1745 +xref: Brodmann_area:14 +xref: FMA:68611 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1008 +xref: OldNeuroNames:2049637081 {source="BIRNLEX:1745"} +is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area +relationship: part_of UBERON:0000451 {notes="vmPFC", source="WP"} ! prefrontal cortex + +[Term] +id: UBERON:0013546 +name: Brodmann (1909) area 15 +def: "Brodmann Area 15 is one of Brodmann's subdivisions of the cerebral cortex in the brain. Area 15 was defined by Brodmann in the guenon monkey, but he found no equivalent structure in humans. However, functional imaging experiments have found structures that may be homologous." [http://en.wikipedia.org/wiki/Brodmann_area_15] +synonym: "area 15 of Brodmann" RELATED [NeuroNames:1010] +synonym: "area 15 of Brodmann (guenon)" RELATED [NeuroNames:1010] +synonym: "area 15 of Brodmann-1909" EXACT [BIRNLEX:1746] +synonym: "B09-15" BROAD ABBREVIATION [BIRNLEX:1746, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-15" EXACT [BIRNLEX:1746] +synonym: "BA15" RELATED [FMA:68612] +synonym: "Brodmann (1909) area 15" EXACT [BIRNLEX:1746] +synonym: "Brodmann area 15" EXACT [FMA:68612] +synonym: "brodmann's area 15" RELATED [NeuroNames:1010] +synonym: "insula ventralis" RELATED LATIN [NeuroNames:1010] +xref: BIRNLEX:1746 +xref: Brodmann_area:15 +xref: FMA:68612 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1010 {source="BIRNLEX:1746"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1010 +is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area + +[Term] +id: UBERON:0013547 +name: Brodmann (1909) area 16 +def: "Brodmann area 16 is a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. It is a relatively undifferentiated cortical area that Brodmann regarded as part of the insula because of the relation of its innermost multiform layer (VI) with the claustrum (VICl). The laminar organization of cortex is almost totally lacking. The molecular layer (I) is wide as in area 15 of Brodmann-1905. The space between layer I and layer VI is composed of a mixture of pyramidal cells and spindle cells with no significant number of granule cells. Pyramidal cells clump in the outer part to form glomeruli similar to those seen in some of the primary olfactory areas (Brodmann-1905). This term also refers to an area known as peripaleocortical claustral - a cytoarchitecturally defined (agranular) portion of the insula at its rostral extreme where it approaches most closely the claustrum and the prepyriform area (Stephan-76)." [http://en.wikipedia.org/wiki/Brodmann_area_16] +synonym: "area 16 of Brodmann" EXACT [FMA:68613] +synonym: "area 16 of Brodmann (guenon)" RELATED [NeuroNames:1011] +synonym: "area 16 of Brodmann-1909" EXACT [BIRNLEX:1747] +synonym: "B09-16" BROAD ABBREVIATION [BIRNLEX:1747, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-16" EXACT [BIRNLEX:1747] +synonym: "BA16" RELATED [FMA:68613] +synonym: "Brodmann (1909) area 16" EXACT [BIRNLEX:1747] +synonym: "Brodmann area 16" EXACT [FMA:68613] +synonym: "brodmann's area 16" RELATED [NeuroNames:1011] +synonym: "insula olfactoria" RELATED LATIN [NeuroNames:1011] +xref: BIRNLEX:1747 +xref: Brodmann_area:16 +xref: FMA:68613 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1011 {source="BIRNLEX:1747"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1011 +is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area + +[Term] +id: UBERON:0013550 +name: Brodmann (1909) area 19 +def: "Brodmann area 19, or BA19, is part of the occipital lobe cortex in the human brain. Along with area 18, it comprises the extrastriate (or peristriate) cortex. In normally-sighted humans, extrastriate cortex is a visual association area, with feature-extracting, shape recognition, attentional, and multimodal integrating functions. This area is also known as peristriate area 19, and it refers to a subdivision of the cytoarchitecturally defined occipital region of cerebral cortex. In the human it is located in parts of the lingual gyrus, the cuneus, the lateral occipital gyrus (H) and the superior occipital gyrus (H) of the occipital lobe where it is bounded approximately by the parieto-occipital sulcus. Cytoarchitecturally it is bounded on one side by the parastriate area 18 which it surrounds. Rostrally it is bounded by the angular area 39 (H) and the occipitotemporal area 37 (H) (Brodmann-1909)." [http://en.wikipedia.org/wiki/Brodmann_area_19] +synonym: "area 19 of Brodmann" EXACT [FMA:68616] +synonym: "area 19 of Brodmann (guenon)" RELATED [NeuroNames:1028] +synonym: "area 19 of Brodmann-1909" EXACT [BIRNLEX:1750] +synonym: "area peristriata" EXACT [BIRNLEX:1750] +synonym: "area praeoccipitalis" RELATED LATIN [NeuroNames:1028] +synonym: "B09-19" BROAD ABBREVIATION [BIRNLEX:1750, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-19" EXACT [BIRNLEX:1750] +synonym: "BA19" RELATED [FMA:68616] +synonym: "Brodmann (1909) area 19" EXACT [BIRNLEX:1750] +synonym: "Brodmann area 19" EXACT [FMA:68616] +synonym: "Brodmann area 19, peristriate" EXACT [BIRNLEX:1750] +synonym: "Brodmann's area 19" EXACT [FMA:68616] +synonym: "preoccipital area" EXACT [FMA:68616] +xref: BIRNLEX:1750 +xref: Brodmann_area:19 +xref: FMA:68616 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1028 {source="BIRNLEX:1750"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1028 +xref: http://linkedlifedata.com/resource/umls/id/C1272537 +xref: UMLS:C1272537 {source="BIRNLEX:1750"} +is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area +relationship: part_of UBERON:0014370 {source="WP"} ! extrastriate cortex + +[Term] +id: UBERON:0013551 +name: Brodmann (1909) area 20 +def: "Brodmann area 20, or BA20, is part of the temporal cortex in the human brain. The region encompasses most of the ventral temporal cortex, a region believed to play a part in high-level visual processing and recognition memory. This area is also known as inferior temporal area 20, and it refers to a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. In the human it corresponds approximately to the inferior temporal gyrus. Cytoarchitecturally it is bounded medially by the ectorhinal area 36 (H), laterally by the middle temporal area 21, rostrally by the temporopolar area 38 (H) and caudally by the occipitotemporal area 37 (H) (Brodmann-1909)." [http://en.wikipedia.org/wiki/Brodmann_area_20] +synonym: "area 20 of Brodmann" EXACT [FMA:68617] +synonym: "area 20 of Brodmann (guenon)" RELATED [NeuroNames:1025] +synonym: "area 20 of Brodmann-1909" EXACT [BIRNLEX:1751] +synonym: "area temporalis inferior" EXACT [BIRNLEX:1751] +synonym: "B09-20" BROAD ABBREVIATION [BIRNLEX:1751, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-20" EXACT [BIRNLEX:1751] +synonym: "BA20" RELATED [FMA:68617] +synonym: "Brodmann (1909) area 20" EXACT [BIRNLEX:1751] +synonym: "Brodmann area 20" EXACT [FMA:68617] +synonym: "Brodmann area 20, inferior temporal" EXACT [BIRNLEX:1751] +synonym: "brodmann's area 20" RELATED [NeuroNames:1025] +synonym: "inferior temporal area" EXACT [FMA:68617] +xref: BIRNLEX:1751 +xref: Brodmann_area:20 +xref: FMA:68617 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1025 {source="BIRNLEX:1751"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1025 +xref: http://linkedlifedata.com/resource/umls/id/C1272538 +xref: UMLS:C1272538 {source="BIRNLEX:1751"} +is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area + +[Term] +id: UBERON:0013552 +name: Brodmann (1909) area 21 +def: "Brodmann area 21, or BA21, is part of the temporal cortex in the human brain. The region encompasses most of the lateral temporal cortex, a region believed to play a part in auditory processing and language. Language function is left lateralized in most individuals. BA21 is superior to BA20 and inferior to BA40 and BA41. This area is also known as middle temporal area 21. It is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. In the human it corresponds approximately to the middle temporal gyrus. It is bounded rostrally by the temporopolar area 38 (H), ventrally by the inferior temporal area 20, caudally by the occipitotemporal area 37 (H), and dorsally by the superior temporal area 22 (Brodmann-1909). [WP,unvetted]." [http://en.wikipedia.org/wiki/Brodmann_area_21] +synonym: "area 21 of Brodmann" EXACT [FMA:68618] +synonym: "area 21 of Brodmann (guenon)" RELATED [NeuroNames:1016] +synonym: "area 21 of Brodmann-1909" EXACT [BIRNLEX:1752] +synonym: "area temporalis media" RELATED [BIRNLEX:1752] +synonym: "B09-21" BROAD ABBREVIATION [BIRNLEX:1752, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-21" EXACT [BIRNLEX:1752] +synonym: "BA21" EXACT ABBREVIATION [] +synonym: "Brodmann (1909) area 21" EXACT [BIRNLEX:1752] +synonym: "Brodmann area 21" EXACT [] +synonym: "Brodmann area 21, middle temporal" EXACT [BIRNLEX:1752] +synonym: "brodmann's area 21" RELATED [NeuroNames:1016] +xref: BIRNLEX:1752 +xref: Brodmann_area:21 +xref: FMA:68618 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1016 {source="BIRNLEX:1752"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1016 +xref: http://linkedlifedata.com/resource/umls/id/C1272539 +xref: UMLS:C1272539 {source="BIRNLEX:1752"} +is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area +relationship: part_of UBERON:0016538 ! temporal cortex + +[Term] +id: UBERON:0013553 +name: Brodmann (1909) area 22 +def: "Brodmann area 22 is one of Brodmann's cytologically defined regions of the brain. It is involved in auditory processing." [http://en.wikipedia.org/wiki/Brodmann_area_22] +synonym: "area 22 of Brodmann" EXACT [FMA:68619] +synonym: "area 22 of Brodmann (guenon)" RELATED [NeuroNames:1017] +synonym: "area 22 of Brodmann-1909" EXACT [BIRNLEX:1753] +synonym: "area temporalis superior" EXACT [BIRNLEX:1753] +synonym: "area temporalis superior" EXACT LATIN [http://en.wikipedia.org/wiki/Brodmann_area_22] +synonym: "B09-22" BROAD ABBREVIATION [BIRNLEX:1753, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-22" EXACT [BIRNLEX:1753] +synonym: "BA22" RELATED [FMA:68619] +synonym: "Brodmann (1909) area 22" EXACT [BIRNLEX:1753] +synonym: "Brodmann area 22" EXACT [FMA:68619] +synonym: "Brodmann area 22, superior temporal" EXACT [BIRNLEX:1753] +synonym: "brodmann's area 22" RELATED [NeuroNames:1017] +synonym: "Superior temporal area" EXACT [FMA:68619] +xref: BIRNLEX:1753 +xref: Brodmann_area:22 +xref: FMA:68619 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1017 {source="BIRNLEX:1753"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1017 +xref: http://linkedlifedata.com/resource/umls/id/C1272540 +xref: UMLS:C1272540 {source="BIRNLEX:1753"} +is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area + +[Term] +id: UBERON:0013554 +name: Brodmann (1909) area 23 +def: "The term area 23 of Brodmann-1909 refers to a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. Brodmann regarded it as topographically and cytoarchitecturally homologous to the combined ventral posterior cingulate area 23 and dorsal posterior cingulate area 31 of the human (Brodmann-1909). Distinctive Features (Brodmann-1905): the cortex is relatively thin; smaller cells predominate; the cell density of the multiform layer (VI) is great, producing a distinct boundary with the subcortical white matter; the internal granular layer (IV) is rather well developed; the internal pyramidal layer (V) contains a dense population of round, medium-sized ganglion cells concentrated at the border with layer IV; layers V and VI are narrow with a distinct mutual boundary.nn* Definition Source NeuroNames" [BIRNLEX:1754] +synonym: "area 23 of Brodmann" EXACT [FMA:68620] +synonym: "area 23 of Brodmann (guenon)" RELATED [NeuroNames:1018] +synonym: "area 23 of Brodmann-1909" EXACT [BIRNLEX:1754] +synonym: "area cingularis posterior" RELATED LATIN [NeuroNames:1018] +synonym: "area cingularis posterior ventralis" EXACT [BIRNLEX:1754] +synonym: "area cingularis posterior ventralis" EXACT LATIN [http://en.wikipedia.org/wiki/Brodmann_area_23] +synonym: "B09-23" BROAD ABBREVIATION [BIRNLEX:1754, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-23" EXACT [BIRNLEX:1754] +synonym: "BA23" RELATED [FMA:68620] +synonym: "Brodmann (1909) area 23" EXACT [BIRNLEX:1754] +synonym: "Brodmann area 23" EXACT [FMA:68620] +synonym: "Brodmann area 23, ventral posterior cingulate" EXACT [BIRNLEX:1754] +synonym: "brodmann's area 23" RELATED [NeuroNames:1018] +synonym: "granular cingulate area" EXACT [FMA:68620] +synonym: "posterior cingulate area" EXACT [FMA:68620] +synonym: "ventral posterior cingulate area" RELATED [] +xref: BIRNLEX:1754 +xref: Brodmann_area:23 +xref: FMA:68620 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1018 {source="BIRNLEX:1754"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1018 +xref: http://linkedlifedata.com/resource/umls/id/C1272541 +xref: UMLS:C1272541 {source="BIRNLEX:1754"} +is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area + +[Term] +id: UBERON:0013556 +name: Brodmann (1909) area 25 +def: "Brodmann area 25 (BA25) is an area in the cerebral cortex of the brain and delineated based on its cytoarchitectonic characteristics. It is also called the subgenual area or area subgenualis. It is the 25th 'Brodmann area' defined by Korbinian Brodmann (thus its name). BA25 is located in the cingulate region as a narrow band in the caudal portion of the subcallosal area adjacent to the paraterminal gyrus. The posterior parolfactory sulcus separates the paraterminal gyrus from BA25. Rostrally it is bound by the prefrontal area 11 of Brodmann." [http://en.wikipedia.org/wiki/Brodmann_area_25] +synonym: "area 25 of Brodmann" EXACT [FMA:68622] +synonym: "area 25 of Brodmann (guenon)" RELATED [NeuroNames:1029] +synonym: "area 25 of Brodmann-1909" EXACT [BIRNLEX:1756] +synonym: "area subgenualis" EXACT [BIRNLEX:1756] +synonym: "B09-25" BROAD ABBREVIATION [BIRNLEX:1756, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-25" EXACT [BIRNLEX:1756] +synonym: "BA25" RELATED [FMA:68622] +synonym: "Brodmann (1909) area 25" EXACT [BIRNLEX:1756] +synonym: "Brodmann area 25" EXACT [FMA:68622] +synonym: "Brodmann area 25, subgenual" EXACT [BIRNLEX:1756] +synonym: "Brodmann's area 25" EXACT [FMA:68622] +xref: BIRNLEX:1756 +xref: Brodmann_area:25 +xref: FMA:68622 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1029 {source="BIRNLEX:1756"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1029 +xref: http://linkedlifedata.com/resource/umls/id/C1272543 +xref: UMLS:C1272543 {source="BIRNLEX:1756"} +is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area + +[Term] +id: UBERON:0013558 +name: Brodmann (1909) area 27 +def: "Area 27 of Brodmann-1909 is a cytoarchitecturally defined cortical area that is a rostral part of the parahippocampal gyrus of the guenon (Brodmann-1909). It is commonly regarded as a synonym of presubiculum (Crosby-62). [WP,unvetted]." [http://en.wikipedia.org/wiki/Brodmann_area_27] +synonym: "area 27" EXACT [FMA:68624] +synonym: "area 27 of Brodmann" EXACT [] +synonym: "area 27 of Brodmann (guenon)" RELATED [NeuroNames:1039] +synonym: "area 27 of Brodmann-1909" EXACT [BIRNLEX:1758] +synonym: "area praesubicularis" EXACT [BIRNLEX:1758] +synonym: "B09-27" BROAD ABBREVIATION [BIRNLEX:1758, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-27" EXACT [BIRNLEX:1758] +synonym: "BA27" EXACT ABBREVIATION [] +synonym: "Brodmann (1909) area 27" EXACT [BIRNLEX:1758] +synonym: "Brodmann area 26, presubicular" EXACT [BIRNLEX:1758] +synonym: "Brodmann area 27" EXACT [FMA:68624] +synonym: "brodmann's area 27" RELATED [NeuroNames:1039] +synonym: "presubicular area" EXACT [FMA:68624] +xref: BIRNLEX:1758 +xref: Brodmann_area:27 +xref: FMA:68624 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1039 {source="BIRNLEX:1758"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1039 +xref: http://linkedlifedata.com/resource/umls/id/C0175194 +xref: UMLS:C0175194 {source="BIRNLEX:1758"} +is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area +relationship: part_of UBERON:0001953 {notes="consider merging many sources treat as synonymous"} ! presubiculum + +[Term] +id: UBERON:0013559 +name: Brodmann (1909) area 28 +def: "." [http://en.wikipedia.org/wiki/Brodmann_area_28] +synonym: "area 28 of Brodmann" EXACT [] +synonym: "area 28 of Brodmann (Crosby)" EXACT [] +synonym: "area 28 of Brodmann (guenon)" RELATED [NeuroNames:1030] +synonym: "area 28 of Brodmann-1909" EXACT [BIRNLEX:1759] +synonym: "area entorhinalis" EXACT [BIRNLEX:1759] +synonym: "area entorhinalis ventralis" EXACT LATIN [http://en.wikipedia.org/wiki/Brodmann_area_28] +synonym: "B09-28" BROAD ABBREVIATION [BIRNLEX:1759, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-28" EXACT [BIRNLEX:1759] +synonym: "BA28" EXACT ABBREVIATION [] +synonym: "Brodmann (1909) area 28" EXACT [BIRNLEX:1759] +synonym: "Brodmann area 28" EXACT [FMA:68625] +synonym: "Brodmann area 28, entorhinal" EXACT [BIRNLEX:1759] +xref: BIRNLEX:1759 +xref: Brodmann_area:28 +xref: FMA:68625 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1030 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1030 {source="BIRNLEX:1759"} +xref: http://linkedlifedata.com/resource/umls/id/C0598377 +xref: UMLS:C0598377 {source="BIRNLEX:1759"} +is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area +relationship: part_of UBERON:0002895 {notes="consider merging many sources treat as synonymous"} ! secondary olfactory cortex + +[Term] +id: UBERON:0013560 +name: Brodmann (1909) area 32 +def: "The Brodmann area 32, also known in the human brain as the dorsal anterior cingulate area 32, refers to a subdivision of the cytoarchitecturally defined cingulate region of cerebral cortex. In the human it forms an outer arc around the anterior cingulate gyrus. The cingulate sulcus defines approximately its inner boundary and the superior rostral sulcus (H) its ventral boundary; rostrally it extends almost to the margin of the frontal lobe. Cytoarchitecturally it is bounded internally by the ventral anterior cingulate area 24, externally by medial margins of the agranular frontal area 6, intermediate frontal area 8, granular frontal area 9, frontopolar area 10, and prefrontal area 11-1909. (Brodmann19-09). Dorsal region of anterior cingulate gyrus is associated with rational thought processes, most notably active during the Stroop task." [http://en.wikipedia.org/wiki/Brodmann_area_32] +synonym: "area 25 of Brodmann-1905" RELATED [NeuroNames:1021] +synonym: "area 32 of Brodmann" EXACT [FMA:68629] +synonym: "area 32 of Brodmann (guenon)" RELATED [NeuroNames:1021] +synonym: "area 32 of Brodmann-1909" EXACT [BIRNLEX:1760] +synonym: "area cingularis anterior dorsalis" EXACT LATIN [http://en.wikipedia.org/wiki/Brodmann_area_32] +synonym: "area cingularis anterior dorsalis" EXACT [BIRNLEX:1760] +synonym: "area praelimbica" RELATED LATIN [NeuroNames:1021] +synonym: "B09-32" BROAD ABBREVIATION [BIRNLEX:1760, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-32" EXACT [BIRNLEX:1760] +synonym: "BA32" RELATED [FMA:68629] +synonym: "Brodmann (1909) area 32" EXACT [BIRNLEX:1760] +synonym: "Brodmann area 32" EXACT [FMA:68629] +synonym: "Brodmann area 32, dorsal anterior cingulate" EXACT [BIRNLEX:1760] +synonym: "brodmann's area 32" RELATED [NeuroNames:1021] +synonym: "Prelimbic area" EXACT [FMA:68629] +xref: BIRNLEX:1760 +xref: Brodmann_area:32 +xref: EMAPA:36447 +xref: FMA:68629 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1021 {source="BIRNLEX:1760"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1021 +xref: http://linkedlifedata.com/resource/umls/id/C1272493 +xref: MBA:972 +xref: UMLS:C1272493 {source="BIRNLEX:1760"} +is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area + +[Term] +id: UBERON:0013561 +name: Brodmann (1909) area 43 +def: "Brodmann area 43 is a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. It was described (but not labeled) on the map of cortical areas in Brodmann-1909, and it was regarded as cytoarchitecturally homologous to area 30 of Mauss in 1908 in the guenon and subcentral area 43 of the human (Brodmann-1909). The Vogts found no distinctive architectonic area of the corresponding location in the guenon (Vogts-1919)." [http://en.wikipedia.org/wiki/Brodmann_area_43] +synonym: "area 43 of brodmann" EXACT [FMA:68640] +synonym: "area 43 of Brodmann (guenon)" RELATED [NeuroNames:1013] +synonym: "area 43 of Brodmann-1909" EXACT [BIRNLEX:1761] +synonym: "area subcentralis" EXACT [BIRNLEX:1761] +synonym: "B09-43" BROAD ABBREVIATION [BIRNLEX:1761, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-43" EXACT [BIRNLEX:1761] +synonym: "BA43" RELATED [FMA:68640] +synonym: "Brodmann (1909) area 43" EXACT [BIRNLEX:1761] +synonym: "Brodmann area 43" EXACT [FMA:68640] +synonym: "Brodmann area 43, subcentral" EXACT [BIRNLEX:1761] +synonym: "brodmann's area 43" RELATED [NeuroNames:1013] +xref: BIRNLEX:1761 +xref: Brodmann_area:43 +xref: FMA:68640 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1013 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1013 {source="BIRNLEX:1761"} +xref: http://linkedlifedata.com/resource/umls/id/C1272506 +xref: UMLS:C1272506 {source="BIRNLEX:1761"} +is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area + +[Term] +id: UBERON:0013562 +name: Brodmann (1909) area 8a +synonym: "area 8 of Brodmann (guenon)" RELATED [NeuroNames:1034] +synonym: "area 8a of Brodmann-1909" EXACT [BIRNLEX:1762] +synonym: "B09-8a" BROAD ABBREVIATION [BIRNLEX:1762, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-8a" EXACT [BIRNLEX:1762] +synonym: "Brodmann (1909) area 8a" EXACT [BIRNLEX:1762] +synonym: "Brodmann area 8a" EXACT [] +synonym: "brodmann's area 8" RELATED [NeuroNames:1034] +xref: BIRNLEX:1762 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1034 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1034 {source="BIRNLEX:1762"} +is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area + +[Term] +id: UBERON:0013573 +name: Brodmann (1909) area 40 +def: "Brodmann area 40, or BA40, is part of the parietal cortex in the human brain. The inferior part of BA40 is in the area of the supramarginal gyrus, which lies at the posterior end of the lateral fissure, in the inferior lateral part of the parietal lobe. It is bounded approximately by the intraparietal sulcus, the inferior postcentral sulcus, the posterior subcentral sulcus and the lateral sulcus. Cytoarchitecturally it is bounded caudally by the angular area 39 (H), rostrally and dorsally by the caudal postcentral area 2, and ventrally by the subcentral area 43 and the superior temporal area 22 (Brodmann-1909). Cytoarchitectonically defined subregions of rostral BA40/the supramarginal gyrus are PF, PFcm, PFm, PFop, and PFt. Area PF is the homologue to macaque area PF, part of the mirror neuron system, and active in humans during imitation. The supramarginal gyrus part of Brodmann area 40 is the region in the inferior parietal lobe that is involved in reading both in regards to meaning and phonology. [WP,unvetted]." [http://en.wikipedia.org/wiki/Supramarginal_gyrus] +synonym: "area 40 of Brodmann" EXACT [FMA:68637] +synonym: "area 40 of Brodmann-1909" EXACT [BIRNLEX:1773] +synonym: "area supramarginalis" EXACT [BIRNLEX:1773] +synonym: "B09-40" BROAD ABBREVIATION [BIRNLEX:1773, NIFSTD:SumsDB_abbrevSource] +synonym: "B09-40" EXACT [BIRNLEX:1773] +synonym: "Brodmann (1909) area 40" EXACT [BIRNLEX:1773] +synonym: "Brodmann area 40" EXACT [FMA:68637] +synonym: "Brodmann area 40, supramarginal" EXACT [BIRNLEX:1773] +synonym: "Supramarginal area 40" EXACT [FMA:68637] +xref: BIRNLEX:1773 +xref: FMA:68637 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2408 +xref: http://linkedlifedata.com/resource/umls/id/C1272501 +xref: Supramarginal:gyrus +xref: UMLS:C1272501 {source="BIRNLEX:1773"} +is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area +relationship: part_of UBERON:0002688 {notes="consider merging many sources treat as synonymous"} ! supramarginal gyrus + +[Term] +id: UBERON:0013581 +name: metapodium bone 1 +def: "A metapodium bone that is part of a digit 1 plus metapodial segment." [OBOL:automatic] +synonym: "metapodium 1" EXACT [] +synonym: "metapodium I" EXACT [] +is_a: UBERON:0003821 ! metapodium bone +intersection_of: UBERON:0003821 ! metapodium bone +intersection_of: part_of UBERON:5006048 ! digit 1 plus metapodial segment +relationship: part_of UBERON:5006048 ! digit 1 plus metapodial segment + +[Term] +id: UBERON:0013582 +name: metapodium bone 2 +def: "A metapodium bone that is part of a digit 2 plus metapodial segment." [OBOL:automatic] +synonym: "metapodium 2" EXACT [] +synonym: "metapodium II" EXACT [] +is_a: UBERON:0003821 ! metapodium bone +intersection_of: UBERON:0003821 ! metapodium bone +intersection_of: part_of UBERON:5006049 ! digit 2 plus metapodial segment +relationship: part_of UBERON:5006049 ! digit 2 plus metapodial segment + +[Term] +id: UBERON:0013583 +name: metapodium bone 3 +def: "A metapodial bone that is associated with digit III." [http://orcid.org/0000-0002-6601-2165] +synonym: "3rd metapodium bone" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "cannon bone" NARROW [http://en.wikipedia.org/wiki/Equine_forelimb_anatomy#Metacarpal_bones, NCBITaxon:9788] +synonym: "metapodial bone III" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "metapodium 3" EXACT [] +synonym: "metapodium III" EXACT [] +is_a: UBERON:0003821 ! metapodium bone +intersection_of: UBERON:0003821 ! metapodium bone +intersection_of: part_of UBERON:5006050 ! digit 3 plus metapodial segment +relationship: part_of UBERON:5006050 ! digit 3 plus metapodial segment + +[Term] +id: UBERON:0013584 +name: metapodium bone 4 +def: "A metapodium bone that is part of a digit 4 plus metapodial segment." [OBOL:automatic] +synonym: "metapodium 4" EXACT [] +synonym: "metapodium IV" EXACT [] +is_a: UBERON:0003821 ! metapodium bone +intersection_of: UBERON:0003821 ! metapodium bone +intersection_of: part_of UBERON:5006051 ! digit 4 plus metapodial segment +relationship: part_of UBERON:5006051 ! digit 4 plus metapodial segment + +[Term] +id: UBERON:0013585 +name: metapodium bone 5 +def: "A metapodium bone that is part of a digit 5 plus metapodial segment." [OBOL:automatic] +synonym: "metapodium 5" EXACT [] +synonym: "metapodium V" EXACT [] +is_a: UBERON:0003821 ! metapodium bone +intersection_of: UBERON:0003821 ! metapodium bone +intersection_of: part_of UBERON:5006052 ! digit 5 plus metapodial segment +relationship: part_of UBERON:5006052 ! digit 5 plus metapodial segment + +[Term] +id: UBERON:0013586 +name: fused metapodial bones 3 and 4 +def: "An element formed from the fusion of metapodium 3 and metapodium 4 (i.e. either metatarsals 3 and 4 or metacarpals 3 and 4)." [http://orcid.org/0000-0001-7920-5321] +synonym: "fused metapodials 3/4" EXACT [] +synonym: "metapodial 3+4" RELATED [] +synonym: "os metapodiale III et IV" EXACT LATIN [] +is_a: UBERON:0003821 ! metapodium bone +intersection_of: UBERON:0003821 ! metapodium bone +intersection_of: has_fused_element UBERON:0013583 ! metapodium bone 3 +intersection_of: has_fused_element UBERON:0013584 ! metapodium bone 4 +relationship: has_fused_element UBERON:0013583 ! metapodium bone 3 +relationship: has_fused_element UBERON:0013584 ! metapodium bone 4 +relationship: present_in_taxon NCBITaxon:91561 + +[Term] +id: UBERON:0013587 +name: fused metacarpal bones 3 and 4 +def: "An element formed from the fusion of metacarpal 3 and metacarpal 4." [http://orcid.org/0000-0001-7920-5321] +synonym: "fused metacarpal 3/4" EXACT [] +synonym: "metacarpal 3+4" RELATED [] +synonym: "os metacarpale III et IV" EXACT LATIN [NominaAnatomicaVeterinaria:2005] +is_a: UBERON:0002374 ! metacarpal bone +is_a: UBERON:0013586 ! fused metapodial bones 3 and 4 +intersection_of: UBERON:0002374 ! metacarpal bone +intersection_of: has_fused_element UBERON:0003647 ! metacarpal bone of digit 3 +intersection_of: has_fused_element UBERON:0003648 ! metacarpal bone of digit 4 +relationship: has_fused_element UBERON:0003647 ! metacarpal bone of digit 3 +relationship: has_fused_element UBERON:0003648 ! metacarpal bone of digit 4 + +[Term] +id: UBERON:0013588 +name: fused metatarsal bones 3 and 4 +def: "An element formed from the fusion of metatarsal 3 and metatarsal 4." [http://orcid.org/0000-0001-7920-5321] +synonym: "fused metatarsal 3/4" EXACT [] +synonym: "metatarsal 3+4" RELATED [] +synonym: "os metatarsale III et IV (Ru)" EXACT LATIN [NominaAnatomicaVeterinaria:2005] +is_a: UBERON:0001448 ! metatarsal bone +is_a: UBERON:0013586 ! fused metapodial bones 3 and 4 +intersection_of: UBERON:0001448 ! metatarsal bone +intersection_of: has_fused_element UBERON:0003652 ! metatarsal bone of digit 3 +intersection_of: has_fused_element UBERON:0003653 ! metatarsal bone of digit 4 +relationship: has_fused_element UBERON:0003652 ! metatarsal bone of digit 3 +relationship: has_fused_element UBERON:0003653 ! metatarsal bone of digit 4 + +[Term] +id: UBERON:0013589 +name: koniocortex +def: "Regions of the cerebal cortex characterized by a particularly well-developed inner granular layer (layer 4); this type of cerebral cortex is represented by the primary sensory Brodmann area 17 of the visual cortex, Brodmann areas 1-3 of the somatic sensory cortex, and Brodmann area 41 of the auditory cortex." [http://www.medilexicon.com/medicaldictionary.php?t=47303] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2471 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000956 ! cerebral cortex + +[Term] +id: UBERON:0013590 +name: cruciate sulcus +def: "A deep groove which runs transversely across the rostro-dorsal surface of the cerebrum and which is one of the landmarks on the cerebral cortex." [http://medical-dictionary.thefreedictionary.com/cruciate+sulcus] +synonym: "cruciate sulci" EXACT PLURAL [] +is_a: UBERON:0013118 ! sulcus of brain + +[Term] +id: UBERON:0013591 +name: postsylvian sulcus +is_a: UBERON:0008334 ! subarachnoid sulcus + +[Term] +id: UBERON:0013592 +name: presylvian sulcus +is_a: UBERON:0008334 ! subarachnoid sulcus + +[Term] +id: UBERON:0013593 +name: suprasylvian sulcus +is_a: UBERON:0008334 ! subarachnoid sulcus + +[Term] +id: UBERON:0013594 +name: ectosylvian sulcus +is_a: UBERON:0008334 ! subarachnoid sulcus + +[Term] +id: UBERON:0013595 +name: postlateral sulcus +is_a: UBERON:0008334 ! subarachnoid sulcus + +[Term] +id: UBERON:0013596 +name: brain coronal sulcus +synonym: "coronal sulcus" BROAD INCONSISTENT [] +synonym: "coronal sulcus of brain" EXACT [] +is_a: UBERON:0008334 ! subarachnoid sulcus + +[Term] +id: UBERON:0013598 +name: accessory nucleus of optic tract +def: "One of a set of small groups of neuron cell bodies located along the trajectory of optic fibers in the mesencephalon. These consist of the posterior nucleus [TA] (nucleus posterior [TA]), medial nucleus [TA] (nucleus medialis [TA]), and lateral nucleus [TA] (nucleus lateralis [TA]), which are also called the posterior, medial, and lateral terminal nuclei. The connections of these nuclei, along with the nucleus of the optic tract, make up the accessory optic system that appears to be concerned with retinal slip in specific directions" [http://www.medilexicon.com/medicaldictionary.php?t=61308] +synonym: "nuclei accessorii tractus optici" EXACT LATIN [] +synonym: "nucleus of accessory optic system" EXACT [] +synonym: "terminal nucleus of accessory optic tract" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=61308] +xref: FMA:256154 +is_a: UBERON:0009661 ! midbrain nucleus +intersection_of: UBERON:0000125 ! neural nucleus +intersection_of: part_of UBERON:0035594 ! accessory optic system +relationship: part_of UBERON:0035594 ! accessory optic system + +[Term] +id: UBERON:0013599 +name: dorsal accessory nucleus of optic tract +synonym: "dorsal terminal nucleus of accessory optic tract" EXACT [] +synonym: "dorsal terminal nucleus of the accessory optic tract" EXACT [ABA:DT] +synonym: "nucleus accessorius posterior tractus optici" EXACT LATIN [FMA:77651, FMA:TA] +synonym: "posterior accessory nucleus of optic tract" EXACT [FMA:77651] +synonym: "posterior terminal nucleus of accessory optic tract" EXACT [] +xref: BAMS:DT +xref: DMBA:16590 +xref: FMA:77651 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1823 +xref: MBA:75 +is_a: UBERON:0013598 {source="FMA"} ! accessory nucleus of optic tract + +[Term] +id: UBERON:0013600 +name: lateral accessory nucleus of optic tract +synonym: "lateral terminal nucleus of the accessory optic tract" EXACT [ABA:LT] +synonym: "nucleus accessorius lateralis tractus optici" EXACT LATIN [FMA:77652, FMA:TA] +xref: BAMS:LT +xref: DHBA:13236 +xref: FMA:77652 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1843 +xref: MBA:66 +is_a: UBERON:0013598 {source="FMA"} ! accessory nucleus of optic tract +disjoint_from: UBERON:0013601 {source="lexical"} ! medial accessory nucleus of optic tract + +[Term] +id: UBERON:0013601 +name: medial accessory nucleus of optic tract +comment: The medial terminal nucleus is usually very prominent but it is reduced in primates (except, curiously, the tarsier), megachiropterans, Cynocephalus and Bradypus. Metatherians have a large medial terminal nucleus[Pettigrew et al. (1989)] +synonym: "medial terminal nucleus of the accessory optic tract" EXACT [ABA:MT] +synonym: "nucleus accessorius medialis tractus optici" EXACT LATIN [FMA:77653, FMA:TA] +xref: BAMS:MT +xref: FMA:77653 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1069 +xref: MBA:58 +is_a: UBERON:0013598 {source="FMA"} ! accessory nucleus of optic tract + +[Term] +id: UBERON:0013605 +name: layer of lateral geniculate body +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +intersection_of: UBERON:0022303 ! nervous system cell part layer +intersection_of: part_of UBERON:0001926 ! lateral geniculate body +relationship: part_of UBERON:0001926 ! lateral geniculate body + +[Term] +id: UBERON:0013606 +name: magnocellular layer of dorsal nucleus of lateral geniculate body +comment: Rods; necessary for the perception of movement, depth, and small differences in brightness[WP] +synonym: "lateral geniculate nucleus magnocellular layer" EXACT [] +synonym: "magnocellular layer of lateral geniculate nucleus" EXACT [] +synonym: "strata magnocellularia" BROAD [] +synonym: "strata magnocellularia nuclei dorsalis corporis geniculati lateralis" EXACT LATIN [FMA:76989, FMA:TA] +xref: DHBA:10431 +xref: FMA:76989 +xref: PBA:128013078 +is_a: UBERON:0013605 ! layer of lateral geniculate body +relationship: part_of UBERON:0002479 ! dorsal lateral geniculate nucleus + +[Term] +id: UBERON:0013607 +name: parvocellular layer of dorsal nucleus of lateral geniculate body +comment: Cones; long- and medium-wavelength ("red" and "green" cones); necessary for the perception of color and form (fine details).[WP] +synonym: "parvocellular layer of lateral geniculate nucleus" EXACT [] +synonym: "strata parvocellularia" BROAD [] +synonym: "strata parvocellularia nuclei dorsalis corporis geniculati lateralis" EXACT LATIN [FMA:76992, FMA:TA] +xref: FMA:76992 +xref: PBA:128013091 +is_a: UBERON:0013605 ! layer of lateral geniculate body +relationship: part_of UBERON:0002479 ! dorsal lateral geniculate nucleus + +[Term] +id: UBERON:0013608 +name: inferior olive dorsal accessory nucleus +synonym: "dorsal accessory nucleus of inferior olivary complex" EXACT [] +xref: EMAPA:37612 {source="MA:th"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=750 +xref: MA:0001042 +is_a: UBERON:0007244 {source="MA-inferred"} ! inferior olivary nucleus + +[Term] +id: UBERON:0013609 +name: inferior olive medial accessory nucleus +synonym: "medial accessory nucleus of inferior olivary complex" EXACT [] +xref: EMAPA:37613 {source="MA:th"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=751 +xref: MA:0001044 +is_a: UBERON:0007244 {source="MA-inferred"} ! inferior olivary nucleus + +[Term] +id: UBERON:0013610 +name: inferior olive ventral accessory nucleus +synonym: "ventral accessory nucleus of inferior olivary complex" EXACT [] +is_a: UBERON:0007244 {source="cjm"} ! inferior olivary nucleus + +[Term] +id: UBERON:0013612 +name: lower jaw cingulum +synonym: "cingulid" BROAD [] +synonym: "tooth cingulid" RELATED [] +is_a: UBERON:0017295 ! cingulum of tooth +intersection_of: UBERON:0017295 ! cingulum of tooth +intersection_of: part_of UBERON:0001710 ! lower jaw region +relationship: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0013613 +name: upper jaw cingulum +is_a: UBERON:0017295 ! cingulum of tooth +intersection_of: UBERON:0017295 ! cingulum of tooth +intersection_of: part_of UBERON:0001709 ! upper jaw region +relationship: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0013614 +name: fasciculus aberans +def: "The fasciulus aberrans is a distinct bundle of fibers at the dorsal aspect of the anterior commisure. These fibers travel in the internal capsule between the putamen and caudate nuclei, and cross the midline to connect the dorsal neocortex of the two hemispheres. When the fasciculus aberrans is absent, the fibers connecting the neocortex of the two hemispheres takes a diffderent route through the external capsule[Johnson et al., (1982a, 1982b, 1994)]" [MorphoBank:177] +is_a: UBERON:0002473 ! intercerebral commissure +is_a: UBERON:0022248 ! cerebral nerve fasciculus + +[Term] +id: UBERON:0013615 +name: koniocellular layer of dorsal nucleus of lateral geniculate body +comment: Short-wavelength "blue" cones.[WP] +synonym: "konioocellular layer of lateral geniculate nucleus" EXACT [] +synonym: "stratum koniocellulare nuclei dorsalis corporis geniculati lateralis" EXACT LATIN [FMA:76988, FMA:TA] +xref: FMA:76988 +is_a: UBERON:0013605 ! layer of lateral geniculate body +relationship: part_of UBERON:0002479 ! dorsal lateral geniculate nucleus + +[Term] +id: UBERON:0013616 +name: primary molar tooth +subset: pheno_slim +synonym: "deciduous molar tooth" EXACT [FMA:84206] +synonym: "primary molar tooth" EXACT [FMA:84206] +synonym: "temporary molar tooth" EXACT [FMA:84206] +xref: FMA:84206 +xref: http://www.snomedbrowser.com/Codes/Details/368703003 +is_a: UBERON:0003655 ! molar tooth +is_a: UBERON:0007115 ! deciduous tooth +intersection_of: UBERON:0003655 ! molar tooth +intersection_of: part_of UBERON:0007116 ! primary dentition + +[Term] +id: UBERON:0013617 +name: upper primary molar tooth +def: "A primary molar tooth that is part of a upper jaw region." [OBOL:automatic] +synonym: "primary upper molar tooth" EXACT [] +synonym: "upper deciduous molar" EXACT [] +synonym: "upper deciduous molar tooth" EXACT [FMA:84210] +synonym: "upper primary molar tooth" EXACT [FMA:84210] +xref: FMA:84210 +xref: http://www.snomedbrowser.com/Codes/Details/422318005 +is_a: UBERON:0003666 ! upper jaw molar +is_a: UBERON:0013616 ! primary molar tooth +is_a: UBERON:0018616 ! primary upper tooth +intersection_of: UBERON:0013616 ! primary molar tooth +intersection_of: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0013618 +name: secondary molar tooth +subset: pheno_slim +synonym: "permanent molar tooth" EXACT [FMA:84207] +synonym: "secondary molar tooth" EXACT [FMA:84207] +xref: FMA:84207 +xref: http://www.snomedbrowser.com/Codes/Details/421593002 +is_a: UBERON:0003655 ! molar tooth +is_a: UBERON:0007775 ! secondary tooth +intersection_of: UBERON:0003655 ! molar tooth +intersection_of: part_of UBERON:0007774 ! secondary dentition + +[Term] +id: UBERON:0013619 +name: upper secondary molar tooth +def: "A secondary molar tooth that is part of a upper jaw region." [OBOL:automatic] +synonym: "maxillary secondary molar tooth" EXACT [FMA:55720] +synonym: "upper permanent molar tooth" EXACT [FMA:55720] +synonym: "upper secondary molar tooth" EXACT [FMA:55720] +xref: FMA:55720 +is_a: UBERON:0003666 ! upper jaw molar +is_a: UBERON:0013618 ! secondary molar tooth +is_a: UBERON:0018613 ! secondary upper tooth +intersection_of: UBERON:0013618 ! secondary molar tooth +intersection_of: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0013620 +name: lower primary molar tooth +def: "A primary molar tooth that is part of a lower jaw region." [OBOL:automatic] +synonym: "lower deciduous molar tooth" EXACT [FMA:84213] +synonym: "primary lower molar tooth" EXACT [] +xref: FMA:84213 +xref: http://www.snomedbrowser.com/Codes/Details/421482001 +is_a: UBERON:0003667 ! lower jaw molar +is_a: UBERON:0013616 ! primary molar tooth +is_a: UBERON:0018617 ! primary lower tooth +intersection_of: UBERON:0013616 ! primary molar tooth +intersection_of: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0013621 +name: lower secondary molar tooth +def: "A secondary molar tooth that is part of a lower jaw region." [OBOL:automatic] +synonym: "lower permanent molar" EXACT [] +synonym: "lower permanent molar tooth" EXACT [FMA:55721] +synonym: "mandibular secondary molar tooth" EXACT [FMA:55721] +xref: FMA:55721 +is_a: UBERON:0003667 ! lower jaw molar +is_a: UBERON:0013618 ! secondary molar tooth +is_a: UBERON:0018614 ! permanent lower tooth +intersection_of: UBERON:0013618 ! secondary molar tooth +intersection_of: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0013622 +name: manual autopod pad +def: "A autopod pad that is part of a manus." [OBOL:automatic] +synonym: "foot pad of manus" RELATED [] +synonym: "manual foot pad" RELATED [] +is_a: UBERON:0001519 ! skin of manus +is_a: UBERON:0012348 ! autopod pad +intersection_of: UBERON:0012348 ! autopod pad +intersection_of: part_of UBERON:0002398 ! manus + +[Term] +id: UBERON:0013623 +name: pedal autopod pad +def: "A autopod pad that is part of a pes." [OBOL:automatic] +synonym: "foot pad of pes" RELATED [] +synonym: "pedal foot pad" RELATED [] +is_a: UBERON:0001513 ! skin of pes +is_a: UBERON:0012348 ! autopod pad +intersection_of: UBERON:0012348 ! autopod pad +intersection_of: part_of UBERON:0002387 ! pes + +[Term] +id: UBERON:0013626 +name: medial metatarsal pad +synonym: "thenar pad" EXACT [] +is_a: UBERON:0008840 ! plantar pad +disjoint_from: UBERON:0013627 {source="lexical"} ! lateral metatarsal pad + +[Term] +id: UBERON:0013627 +name: lateral metatarsal pad +synonym: "hypothenar pad" EXACT [] +is_a: UBERON:0008840 ! plantar pad + +[Term] +id: UBERON:0013628 +name: pollical pad +synonym: "interdigital pad 1 of manus" EXACT [] +is_a: UBERON:0003533 ! manual digit skin +is_a: UBERON:0012349 ! digital pad +is_a: UBERON:0013622 ! manual autopod pad +relationship: part_of UBERON:0001463 ! manual digit 1 + +[Term] +id: UBERON:0013629 +name: hallical pad +synonym: "interdigital pad 1 of pes" EXACT [] +is_a: UBERON:0003530 ! pedal digit skin +is_a: UBERON:0012349 ! digital pad +is_a: UBERON:0013623 ! pedal autopod pad +relationship: part_of UBERON:0003631 ! pedal digit 1 + +[Term] +id: UBERON:0013630 +name: short bone +def: "Short bones are designated as those bones that are as wide as they are long. Their primary function is to provide support and stability with little to no movement. They are one of five types of bones: long, short, flat, irregular and sesamoid. Examples of these bones include the tarsals in the foot and the carpals in the hand." [http://en.wikipedia.org/wiki/Short_bone] +xref: FMA:7475 +xref: http://www.snomedbrowser.com/Codes/Details/332807009 +xref: NCIT:C33545 +xref: Short:bone +is_a: UBERON:0001474 {source="NCIT"} ! bone element + +[Term] +id: UBERON:0013631 +name: sesamoid element +def: "Ossicle that develops within bands of dense, regular connective tissue (e.g., tendons and ligaments). Sesamoids are generally located proximate to a bony prominence, over which the dense regular connective tissue wraps, and/or a joint or articulation." [PSPUB:0000169, VSAO:0000137] +comment: Sesamoids are often endochondral replacement elements and in addition to bone tissue, may also be composed of articular cartilage, fibrocartilage, hyaline cartilage, and calcified cartilage. +synonym: "sesamoid" EXACT [VSAO:0000137] +xref: VSAO:0000137 +is_a: UBERON:0010911 {source="VSAO"} ! ossicle +relationship: develops_in UBERON:0007846 {source="VSAO"} ! dense regular connective tissue + +[Term] +id: UBERON:0013632 +name: sesamoid cartilage +def: "A sesamoid element that is composed primarily of cartilage tissue." [OBOL:automatic] +synonym: "cartilago sesamoidea" EXACT [FMA:55379] +synonym: "sesamoid cartilage of cricopharyngeal ligament" EXACT [FMA:55379] +xref: FMA:55379 +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0013631 ! sesamoid element +intersection_of: UBERON:0013631 ! sesamoid element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0013633 +name: intertrochanteric crest +def: "The intertrochanteric crest is a bony ridge located on the posterior side of the head of the femur, stretching obliquely downward and medially from the summit of the greater trochanter to the lesser trochanter." [http://en.wikipedia.org/wiki/Intertrochanteric_crest] +comment: Together with the intertrochanteric line on the anterior side of the head, the crest mark the transition between of the neck of femur into the shaft of femur. An elevation between the middle and proximal third of the crest is known as the quadrate tubercle. The upper half of the crest forms the posterior border of the greater trochanter. The distal capsular attachment on the femur follows the shape of the irregular rim between the head and the neck. As a consequence, the capsule of the hip joint attaches in the region of the intertrochanteric line on the anterior side, but a finger away from the intertrochanteric crest on the posterior side of the head +xref: FMA:75100 +xref: Intertrochanteric:crest +is_a: UBERON:0006800 ! anatomical line +relationship: connects UBERON:0002503 ! greater trochanter +relationship: connects UBERON:0002504 ! lesser trochanter +relationship: part_of UBERON:0004412 ! proximal epiphysis of femur + +[Term] +id: UBERON:0013634 +name: intertrochanteric line +def: "The intertrochanteric line (or spiral line of the femur) is a line located on the anterior side of the proximal end of the femur that stretches between the lesser trochanter and the greater trochanter forming the base of the neck of the femur, roughly following the direction of the shaft of the femur." [http://en.wikipedia.org/wiki/Intertrochanteric_line] +xref: FMA:74587 +xref: Intertrochanteric:line +is_a: UBERON:0006800 {source="FMA"} ! anatomical line +relationship: part_of UBERON:0004412 ! proximal epiphysis of femur + +[Term] +id: UBERON:0013635 +name: sphincter colli muscle +synonym: "sphincter colli" EXACT [] +is_a: UBERON:0002377 ! muscle of neck + +[Term] +id: UBERON:0013636 +name: epithelium of intestinal villus +def: "A epithelium that is part of a intestinal villus." [OBOL:automatic] +synonym: "intestinal villus epithelium" EXACT [FMA:63587] +synonym: "villous epithelium" RELATED [] +synonym: "villus epithelium" RELATED [] +xref: FMA:63587 +is_a: UBERON:0001902 ! epithelium of small intestine +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001213 ! intestinal villus +relationship: part_of UBERON:0001213 ! intestinal villus + +[Term] +id: UBERON:0013637 +name: prostate gland lateral lobe +def: "The prostate gland lobe that is located on the lateral side of the organ." [ncithesaurus:Lateral_Lobe_of_the_Prostate] +synonym: "lateral lobe of prostate" EXACT [FMA:19577] +synonym: "lateral lobe of prostate gland" EXACT [FMA:19577] +synonym: "lateral prostate" RELATED [] +synonym: "lateral ventral lobe of prostate gland" RELATED [MorphoBank:MorphoBank] +xref: EMAPA:29822 +xref: FMA:19577 +xref: MA:0003125 +xref: NCIT:C13092 +is_a: UBERON:0001328 ! lobe of prostate +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0001328 ! lobe of prostate +intersection_of: in_lateral_side_of UBERON:0002367 ! prostate gland +relationship: in_lateral_side_of UBERON:0002367 ! prostate gland + +[Term] +id: UBERON:0013638 +name: horny papilla of tongue +synonym: "horny papilla" EXACT [] +synonym: "horny papillae" RELATED PLURAL [] +is_a: UBERON:0001726 ! papilla of tongue + +[Term] +id: UBERON:0013639 +name: mechanical papilla of tongue +synonym: "mechanical papilla" EXACT [] +synonym: "mechanical papillae" RELATED PLURAL [] +is_a: UBERON:0001726 ! papilla of tongue + +[Term] +id: UBERON:0013640 +name: internal cheek pouch +comment: Lined with oral epithelium +synonym: "internal buccal pouch" EXACT [] +is_a: UBERON:0008802 ! cheek pouch +relationship: has_part UBERON:0002424 ! oral epithelium + +[Term] +id: UBERON:0013641 +name: external cheek pouch +comment: may be lined with fur +synonym: "external buccal pouch" EXACT [] +is_a: UBERON:0008802 ! cheek pouch + +[Term] +id: UBERON:0013642 +name: ring of oral cilia +is_a: UBERON:0000062 ! organ +relationship: composed_primarily_of UBERON:0012473 ! oral cirrus +relationship: surrounds UBERON:0000165 ! mouth + +[Term] +id: UBERON:0013643 +name: lophophore +def: "A ring of ciliated tentacles surrounding the mouth" [http://en.wikipedia.org/wiki/Lophophore] +xref: http://en.wikipedia.org/wiki/Lophophore +is_a: UBERON:0013642 ! ring of oral cilia +relationship: present_in_taxon NCBITaxon:10205 +relationship: present_in_taxon NCBITaxon:120557 +relationship: present_in_taxon NCBITaxon:43120 + +[Term] +id: UBERON:0013644 +name: duodenal ampulla +def: "The very first part of the duodenum which is slightly dilated." [http://en.wikipedia.org/wiki/Duodenal_cap] +synonym: "ampulla (duodenum)" EXACT [FMA:14927] +synonym: "ampulla duodeni" EXACT [FMA:TA] +synonym: "ampulla of duodenum" EXACT [FMA:14927] +synonym: "bulbus (duodenum)" EXACT [FMA:14927] +synonym: "bulbus duodeni" EXACT [FMA:TA] +synonym: "duodenal cap" EXACT [FMA:14927] +synonym: "duodenal cap viewed radiologically" EXACT [FMA:14927] +xref: Duodenal:cap +xref: FMA:14927 +xref: http://www.snomedbrowser.com/Codes/Details/362149005 +is_a: UBERON:0004921 ! subdivision of digestive tract +relationship: adjacent_to UBERON:0000945 ! stomach +relationship: part_of UBERON:0002114 ! duodenum + +[Term] +id: UBERON:0013645 +name: gular gland +def: "A gland that is part of the gular region (throat)" [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0003297 ! gland of integumental system +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0011154 ! gular region +relationship: part_of UBERON:0011154 ! gular region + +[Term] +id: UBERON:0013646 +name: buccal nerve +def: "The buccal nerve (also called the long buccal nerve) is a nerve in the face. It is a branch of the mandibular nerve (which is itself a branch of the trigeminal nerve) and transmits sensory information from skin over the buccal membrane (in general, the cheek) and from the second and third molar teeth." [http://en.wikipedia.org/wiki/Buccal_nerve] +synonym: "buccinator branch" RELATED [http://en.wikipedia.org/wiki/Buccal_nerve] +synonym: "buccinator nerve" EXACT [FMA:53066] +synonym: "long buccal nerve" EXACT [FMA:53066] +synonym: "long buccal nerve" RELATED [http://en.wikipedia.org/wiki/Buccal_nerve] +xref: BAMS:bucn +xref: Buccal:nerve +xref: FMA:53066 +xref: http://www.snomedbrowser.com/Codes/Details/280253000 +is_a: UBERON:0011779 ! nerve of head region +relationship: branching_part_of UBERON:0000375 {source="FMA"} ! mandibular nerve +relationship: part_of UBERON:0000375 ! mandibular nerve + +[Term] +id: UBERON:0013647 +name: lateral pterygoid nerve +def: "A nerve that innervates the lateral pterygoid muscle." [UBERON:cjm] +synonym: "branch of buccal nerve to lateral pterygoid" EXACT [FMA:53107] +synonym: "external pterygoid nerve" RELATED [http://en.wikipedia.org/wiki/Lateral_pterygoid_nerve] +synonym: "nerve to lateral pterygoid" EXACT [FMA:53107] +synonym: "nervus pterygoideus lateralis" EXACT [FMA:TA] +xref: FMA:53107 +xref: http://en.wikipedia.org/wiki/Lateral_pterygoid_nerve +xref: http://www.snomedbrowser.com/Codes/Details/48852002 +is_a: UBERON:0011779 ! nerve of head region +intersection_of: UBERON:0001021 ! nerve +intersection_of: innervates UBERON:0006719 ! lateral pterygoid muscle +relationship: branching_part_of UBERON:0013646 {source="FMA"} ! buccal nerve +relationship: innervates UBERON:0006719 ! lateral pterygoid muscle +relationship: part_of UBERON:0013646 ! buccal nerve + +[Term] +id: UBERON:0013648 +name: masseteric artery +def: "The masseteric artery is small and passes laterally through the mandibular notch to the deep surface of the masseter muscle, which it supplies. It anastomoses with the masseteric branches of the external maxillary artery and with the transverse facial artery." [http://en.wikipedia.org/wiki/Masseteric_artery] +synonym: "arteria masseterica" EXACT LATIN [http://en.wikipedia.org/wiki/Masseteric_artery] +xref: FMA:49739 +xref: http://linkedlifedata.com/resource/umls/id/C0226149 +xref: http://www.snomedbrowser.com/Codes/Details/147864007 +xref: Masseteric:artery +xref: NCIT:C53052 +xref: UMLS:C0226149 {source="ncithesaurus:Masseteric_Artery"} +is_a: UBERON:0001637 ! artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0001597 ! masseter muscle +relationship: branching_part_of UBERON:0001616 {source="FMA"} ! maxillary artery +relationship: part_of UBERON:0001616 ! maxillary artery +relationship: supplies UBERON:0001597 ! masseter muscle + +[Term] +id: UBERON:0013649 +name: fused tarsal bones 1 and 2 +def: "A tarsal bone that is formed from the fusion of the 1st and 2nd tarsal bones." [UBERON:skansa] +synonym: "fused tarsals 1 and 2" EXACT [] +synonym: "os cuneiforme mediointermedium" EXACT LATIN [NominaAnatomicaVeterinaria:2005] +synonym: "os tarsale I et II" EXACT LATIN [NominaAnatomicaVeterinaria:2005] +synonym: "tarsals 1+2" RELATED [] +is_a: UBERON:0010721 ! distal tarsal bone +intersection_of: UBERON:0001447 ! tarsal bone +intersection_of: has_fused_element UBERON:0001452 ! distal tarsal bone 1 +intersection_of: has_fused_element UBERON:0001453 ! distal tarsal bone 2 +relationship: has_fused_element UBERON:0001452 ! distal tarsal bone 1 +relationship: has_fused_element UBERON:0001453 ! distal tarsal bone 2 +relationship: present_in_taxon NCBITaxon:9788 + +[Term] +id: UBERON:0013653 +name: velar skeleton +def: "Subdivision of skeleton that is part of the velum and consists of a complex arrangement of thin cartilage rods and arches" [http://orcid.org/0000-0002-6601-2165, ISBN:9780226315683] +synonym: "skeleton of velum" EXACT [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010912 ! subdivision of skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0012121 ! respiratory velum +relationship: part_of UBERON:0008895 {notes="in hagfishes it is difficult to separate neurocranium from visceral skeleton"} ! splanchnocranium +relationship: part_of UBERON:0012121 ! respiratory velum +relationship: present_in_taxon NCBITaxon:7762 +relationship: skeleton_of UBERON:0012121 ! respiratory velum + +[Term] +id: UBERON:0013655 +name: elastica externa of notochord +synonym: "elastica externa" EXACT [XAO:0001020] +synonym: "membrana elastica externa" EXACT [] +synonym: "notochordal sheath" RELATED [XAO:0001020] +xref: XAO:0001020 +is_a: UBERON:0000479 {source="XAO"} ! tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: bounding_layer_of UBERON:0002328 ! notochord +relationship: part_of UBERON:0002328 ! notochord + +[Term] +id: UBERON:0013656 +name: dulla +def: "A diverticulum on the lingual aspect of the soft palate of male dromedaries which may be inflated with air and be extruded from the oral cavity during rut." [ISBN:0470961694] +synonym: "dulaa" EXACT [] +synonym: "dulah" EXACT [] +xref: Dulla:(organ) +is_a: UBERON:0000481 ! multi-tissue structure +relationship: located_in UBERON:0000167 ! oral cavity +relationship: part_of UBERON:0000165 ! mouth + +[Term] +id: UBERON:0013657 +name: hump +def: "A fatty deposit found on the back of camels." [ISBN:0174480199] +synonym: "camel hump" EXACT [] +synonym: "CamelHump" EXACT [] +is_a: UBERON:0000481 ! multi-tissue structure +relationship: has_part UBERON:0001013 ! adipose tissue +relationship: part_of UBERON:0001137 ! dorsum + +[Term] +id: UBERON:0013658 +name: corpus cavernosum maxillaris +def: "A bulbous ridge of highly vascularized tissue that runs along the center of the hard palate, expanding cranially to form two large lobes that terminate under the tip of the rostral palate, with another enlarged node at the caudal terminus." [http://www.ncbi.nlm.nih.gov/pubmed/23450839] +synonym: "palatal corpus cavernosum maxillaris" EXACT [] +synonym: "palatal organ" BROAD [] +synonym: "palatal reital organ" EXACT [] +is_a: UBERON:0003103 ! compound organ +relationship: part_of UBERON:0007375 ! roof of mouth + +[Term] +id: UBERON:0013659 +name: spongiose tissue of corpus cavernosum maxillaris +def: "A erectile tissue that is part of a corpus cavernosum maxillaris." [OBOL:automatic] +is_a: UBERON:0008324 ! erectile tissue +intersection_of: UBERON:0008324 ! erectile tissue +intersection_of: part_of UBERON:0013658 ! corpus cavernosum maxillaris +relationship: part_of UBERON:0013658 ! corpus cavernosum maxillaris + +[Term] +id: UBERON:0013670 +name: midline of corpus cavernosum maxillaris +synonym: "midline of palatal organ" BROAD [] +is_a: UBERON:0006800 ! anatomical line +relationship: part_of UBERON:0013658 ! corpus cavernosum maxillaris + +[Term] +id: UBERON:0013671 +name: nerve ending of of corpus cavernosum maxillaris +synonym: "nerve of palatal organ" BROAD [] +is_a: UBERON:0012453 ! nerve ending +intersection_of: UBERON:0012453 ! nerve ending +intersection_of: part_of UBERON:0013658 ! corpus cavernosum maxillaris +relationship: part_of UBERON:0013658 ! corpus cavernosum maxillaris + +[Term] +id: UBERON:0013672 +name: priapium +def: "A complex muscular and bony clasping and copulatory organ derived mainly from the pelvic fins, found under the head of male Phallostethoidea with the anus opening on one side and the genital pore on the other. The structure varies among family members. Hook-like ctenactia articulate basally with the aproctal axial which is movably articulated with the proctal axial bone itself, suspended anteriorly by the outer (and sometimes inner) pulvinular bone from the cleithrum and perhaps the urohyal. Other elements are the priapal ribs, the anteplural cartilage (supporting elements along with the cleithrum and the pulvinar), the toxactinium, the infrasulcar and the uncus (forming the claspers along with the ctenactinium), the penial, basipenial, papillary, prepapillary and cristate bones (forming the papillary unit)." [http://en.academic.ru/dic.nsf/en_ichthyology/13676/priapium, http://species.wikimedia.org/wiki/Template\:Zt3363.45, ISBN:047175644X] +comment: Contains ducts from kidney, gonads, terminal parts of intestine[ISBN:047175644X] +synonym: "priapia" RELATED PLURAL [] +is_a: UBERON:0008811 ! intromittent organ +relationship: has_part UBERON:0001245 ! anus +relationship: part_of UBERON:0000033 ! head +relationship: present_in_taxon NCBITaxon:270656 + +[Term] +id: UBERON:0013673 +name: os priapium +def: "Bone of the priapium." [http://en.academic.ru/dic.nsf/en_ichthyology/13676/priapium] +synonym: "ossa priapium" RELATED PLURAL [] +is_a: UBERON:0003457 ! head bone +is_a: UBERON:0007719 ! bone of reproductive organ +relationship: part_of UBERON:0013672 ! priapium + +[Term] +id: UBERON:0013674 +name: ctenactinium +def: "A curved rod-like clasper on the posterior side of the priapium in Phallostethidae." [http://en.academic.ru/dic.nsf/en_ichthyology/3786/ctenactinium] +synonym: "ctenactinia" RELATED PLURAL [] +is_a: UBERON:0003457 ! head bone +is_a: UBERON:0007719 ! bone of reproductive organ +relationship: in_posterior_side_of UBERON:0013672 ! priapium +relationship: part_of UBERON:0013672 ! priapium + +[Term] +id: UBERON:0013675 +name: toxactinium +def: "A long curved projection from the anterior end of the priapium in some Phallostethidae" [http://en.academic.ru/dic.nsf/en_ichthyology/17293/toxactinium] +synonym: "toxactinia" RELATED PLURAL [] +is_a: UBERON:0000062 ! organ +is_a: UBERON:0005156 ! reproductive structure +relationship: in_anterior_side_of UBERON:0013672 ! priapium +relationship: part_of UBERON:0013672 ! priapium + +[Term] +id: UBERON:0013676 +name: aproctal bone of priapium +def: "The ventral element in the priapium of the Phallostethidae on which articulate the ctenactinia (q.v.). Also called aproctal or pelvic bone" [http://en.academic.ru/dic.nsf/en_ichthyology/1032/axial] +synonym: "aproctal bone" RELATED [] +synonym: "axial bone" RELATED [] +synonym: "pevic bone" RELATED [] +is_a: UBERON:0003457 ! head bone +is_a: UBERON:0007719 ! bone of reproductive organ +relationship: part_of UBERON:0013672 ! priapium + +[Term] +id: UBERON:0013677 +name: serrated projection of ctenactinium +synonym: "ctenactinial serra" RELATED [] +synonym: "ctenactinium serra" RELATED [] +synonym: "serrae" BROAD PLURAL [] +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0013674 ! ctenactinium + +[Term] +id: UBERON:0013678 +name: anatomical line between inner canthi +def: "An anatomical line of the face that connects the two inner (medial) canthi of the eye. The length of this line is known as the inter canthal distance." [http://orcid.org/0000-0002-6601-2165] +synonym: "bicanthal plane" RELATED [] +synonym: "inter inner canthal line" EXACT [] +synonym: "inter medial canthal line" EXACT [] +synonym: "inter-canthal line" BROAD [] +synonym: "intercanthal line" BROAD [] +xref: FMA:284806 +is_a: UBERON:0006800 ! anatomical line +intersection_of: UBERON:0006800 ! anatomical line +intersection_of: connects UBERON:0013679 ! inner canthus of right eye +intersection_of: connects UBERON:0013680 ! inner canthus of left eye +intersection_of: part_of UBERON:0001456 ! face +relationship: connects UBERON:0013679 ! inner canthus of right eye +relationship: connects UBERON:0013680 ! inner canthus of left eye +relationship: part_of UBERON:0001456 ! face + +[Term] +id: UBERON:0013679 +name: inner canthus of right eye +def: "A inner canthus that is part of a right eye." [OBOL:automatic] +synonym: "medial angle of right eye" RELATED [FMA:59319] +synonym: "medial canthus of right eye" RELATED [FMA:59319] +synonym: "right inner canthus" EXACT [] +synonym: "right medial canthus" EXACT [] +synonym: "right medial palpebral commissure" EXACT [FMA:59319] +xref: FMA:59319 +is_a: UBERON:0005611 ! inner canthus +intersection_of: UBERON:0005611 ! inner canthus +intersection_of: part_of UBERON:0004549 ! right eye +relationship: part_of UBERON:0004549 ! right eye + +[Term] +id: UBERON:0013680 +name: inner canthus of left eye +def: "A inner canthus that is part of a left eye." [OBOL:automatic] +synonym: "left inner canthus" EXACT [] +synonym: "left medial canthus" EXACT [] +synonym: "left medial palpebral commissure" EXACT [FMA:59320] +synonym: "medial angle of left eye" RELATED [FMA:59320] +synonym: "medial canthus of left eye" RELATED [FMA:59320] +xref: FMA:59320 +is_a: UBERON:0005611 ! inner canthus +intersection_of: UBERON:0005611 ! inner canthus +intersection_of: part_of UBERON:0004548 ! left eye +relationship: part_of UBERON:0004548 ! left eye + +[Term] +id: UBERON:0013682 +name: peripheral region of retina +def: "Region of retina that extends from central retina to ora serrata. Peripheral retina is dominated by rods and also has less ganglion cells and is not as thick as central retina. It is responsible for peripheral and night vision." [https://github.com/obophenotype/uberon/issues/1542, https://github.com/obophenotype/uberon/issues/216, https://webvision.med.utah.edu/book/part-i-foundations/simple-anatomy-of-the-retina/, XAO:0004458] +synonym: "peripheral retina" EXACT [XAO:0004458] +xref: http://www.snomedbrowser.com/Codes/Details/264141008 +xref: XAO:0004458 +is_a: UBERON:0000073 ! regional part of nervous system +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0000966 ! retina + +[Term] +id: UBERON:0013683 +name: left dorsal thalamus +def: "A dorsal thalamus that is in_the_left_side_of a diencephalon." [OBOL:automatic] +subset: pheno_slim +synonym: "left thalamus" BROAD [FMA:258716] +xref: FMA:258716 +is_a: UBERON:0004703 ! dorsal thalamus +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0004703 ! dorsal thalamus +intersection_of: in_left_side_of UBERON:0001894 ! diencephalon +relationship: in_left_side_of UBERON:0001894 ! diencephalon + +[Term] +id: UBERON:0013684 +name: right dorsal thalamus +def: "A dorsal thalamus that is in_the_right_side_of a diencephalon." [OBOL:automatic] +subset: pheno_slim +synonym: "right thalamus" BROAD [FMA:258714] +xref: FMA:258714 +is_a: UBERON:0004703 ! dorsal thalamus +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0004703 ! dorsal thalamus +intersection_of: in_right_side_of UBERON:0001894 ! diencephalon +relationship: in_right_side_of UBERON:0001894 ! diencephalon + +[Term] +id: UBERON:0013685 +name: foramen of skull +def: "Anatomical space that is an opening in a bone of the skull." [http://orcid.org/0000-0002-6601-2165, TAO:curator] +synonym: "cranial conduit" NARROW [FMA:53165] +synonym: "cranial foramen" NARROW [] +synonym: "foramen of skull" EXACT [http://en.wikipedia.org/wiki/Foramina_of_the_skull] +synonym: "foramina of the skull" RELATED PLURAL [http://en.wikipedia.org/wiki/Foramina_of_the_skull] +xref: FMA:53165 +xref: http://en.wikipedia.org/wiki/Foramina_of_the_skull +xref: http://www.snomedbrowser.com/Codes/Details/276742007 +is_a: UBERON:0005744 ! bone foramen +intersection_of: UBERON:0005744 ! bone foramen +intersection_of: part_of UBERON:0003129 ! skull +relationship: part_of UBERON:0003129 ! skull + +[Term] +id: UBERON:0013686 +name: anatomical conduit space +def: "An anatomical space which is the lumen of some anatomical conduit and connects two or more spaces together[FMA,modified]." [FMA:9338, http://orcid.org/0000-0002-6601-2165] +synonym: "foramen space" NARROW [] +xref: FMA:9338 +is_a: UBERON:0000464 {source="FMA"} ! anatomical space +relationship: connects UBERON:0000464 {minCardinality="2", maxCardinality="2"} ! anatomical space +relationship: luminal_space_of UBERON:0004111 ! anatomical conduit +relationship: part_of UBERON:0004111 ! anatomical conduit + +[Term] +id: UBERON:0013687 +name: pericranium +def: "Periosteum that is part of a skull." [OBOL:automatic] +synonym: "periosteum externum cranii" EXACT LATIN [FMA:76623, FMA:TA] +xref: FMA:76623 +is_a: UBERON:0002515 ! periosteum +intersection_of: UBERON:0002515 ! periosteum +intersection_of: part_of UBERON:0003129 ! skull +relationship: part_of UBERON:0003129 ! skull + +[Term] +id: UBERON:0013688 +name: tonsil germinal center +def: "A germinal center that is part of a tonsil." [OBOL:automatic] +synonym: "tonsil reaction center" RELATED [CALOHA:TS-1288] +xref: CALOHA:TS-1288 +is_a: UBERON:0010754 ! germinal center +intersection_of: UBERON:0010754 ! germinal center +intersection_of: part_of UBERON:0002372 ! tonsil +relationship: part_of UBERON:0002372 ! tonsil + +[Term] +id: UBERON:0013689 +name: appendix lymphoid tissue +def: "Lymphoid tissue located in the appendix." [CALOHA:TS-1268] +synonym: "appendix lymphoid" RELATED [CALOHA:TS-1268] +synonym: "lymphatic tissue of appendix" EXACT [OBOL:automatic] +synonym: "lymphatic tissue of vermiform appendix" EXACT [OBOL:automatic] +xref: CALOHA:TS-1268 +is_a: UBERON:0001744 ! lymphoid tissue +intersection_of: UBERON:0001744 ! lymphoid tissue +intersection_of: part_of UBERON:0001154 ! vermiform appendix +relationship: part_of UBERON:0001154 ! vermiform appendix + +[Term] +id: UBERON:0013691 +name: buttock +def: "A zone of soft tissue located on the posterior of the lateral side of the pelvic region corresponding to the gluteal muscles." [http://en.wikipedia.org/wiki/Buttocks, http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +subset: pheno_slim +synonym: "buttocks" RELATED PLURAL [http://en.wikipedia.org/wiki/Buttocks] +synonym: "clunis" EXACT [FMA:25245] +synonym: "gluteal part of pelvic girdle" EXACT [FMA:25245] +synonym: "gluteal region" EXACT [FMA:25245] +synonym: "regio glutealis" EXACT LATIN [FMA:TA] +xref: CALOHA:TS-2224 +xref: EFO:0003070 +xref: FMA:25245 +xref: http://en.wikipedia.org/wiki/Buttocks +xref: http://linkedlifedata.com/resource/umls/id/C0006497 +xref: http://www.snomedbrowser.com/Codes/Details/362677002 +xref: MESH:D002081 +xref: NCIT:C89806 +xref: UMLS:C0006497 {source="ncithesaurus:Buttock"} +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:0034929 ! external soft tissue zone +relationship: fma_set_term FMA:76446 +relationship: has_part UBERON:0002000 ! gluteal muscle +relationship: in_lateral_side_of UBERON:0001271 ! pelvic girdle region +relationship: part_of UBERON:0001271 {source="FMA"} ! pelvic girdle region + +[Term] +id: UBERON:0013692 +name: inframammary fold +def: "Inframammary fold, inframammary crease or inframammary line is the feature of human anatomy which is a natural boundary of a breast from below, the place where the breast and the chest meet. The choice of the term depends on the prominence of the feature." [CALOHA:TS-2350] +synonym: "inframammary breast" RELATED [CALOHA:TS-2350] +synonym: "inframammary crease" RELATED [CALOHA:TS-2350] +xref: CALOHA:TS-2350 +xref: FMA:62109 +is_a: UBERON:0006800 {source="FMA"} ! anatomical line +relationship: adjacent_to UBERON:0000310 ! breast +relationship: adjacent_to UBERON:0001443 ! chest +relationship: part_of UBERON:0002100 ! trunk + +[Term] +id: UBERON:0013693 +name: cerebral cortex neuropil +def: "A neuropil that is part of a cerebral cortex [Automatically generated definition]." [OBOL:automatic] +synonym: "neuropil of cerebral cortex" EXACT [OBOL:automatic] +xref: CALOHA:TS-2396 +is_a: UBERON:0002606 ! neuropil +intersection_of: UBERON:0002606 ! neuropil +intersection_of: part_of UBERON:0000956 ! cerebral cortex +relationship: part_of UBERON:0000956 ! cerebral cortex + +[Term] +id: UBERON:0013694 +name: brain endothelium +def: "Vascular endothelium found in blood vessels of the blood-brain-barrier." [CALOHA:TS-0092] +synonym: "cerebromicrovascular endothelium" RELATED [CALOHA:TS-0092] +xref: BTO:0001852 +xref: BTO:0003248 +xref: CALOHA:TS-0092 +is_a: UBERON:0001986 ! endothelium +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0000955 ! brain +relationship: part_of UBERON:0000955 ! brain + +[Term] +id: UBERON:0013695 +name: colon endothelium +def: "Vascular endothelium found in colon blood vessels." [CALOHA:TS-0162] +synonym: "colon endothelial cell" RELATED [CALOHA:TS-0162] +synonym: "colon endothelial cells" RELATED [CALOHA:TS-0162] +synonym: "colonic endothelial cell" RELATED [CALOHA:TS-0162] +synonym: "colonic endothelium" RELATED [CALOHA:TS-0162] +synonym: "colorectal endothelial cell" RELATED [CALOHA:TS-0162] +synonym: "colorectal endothelium" RELATED [CALOHA:TS-0162] +xref: CALOHA:TS-0162 +is_a: UBERON:0000397 ! colonic epithelium +is_a: UBERON:0001986 ! endothelium +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0001155 ! colon + +[Term] +id: UBERON:0013696 +name: tonsil epithelium +def: "The epithelium that forms the surface of the tonsil dips into the underlying connective tissue in numerous places, forming crypts kown as tonsillar crypts. Stratified squamous epithelium, that may be heavily infiltrated by lymphocytes. Epithelial cells are present in the germinal as well as in the periphery of the nodule." [CALOHA:TS-2070] +synonym: "epithelium of tonsil" RELATED [CALOHA:TS-2070] +synonym: "tonsil epithelial cell" RELATED [CALOHA:TS-2070] +xref: CALOHA:TS-2070 +is_a: UBERON:0003351 ! pharyngeal epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002372 ! tonsil +relationship: part_of UBERON:0002372 ! tonsil + +[Term] +id: UBERON:0013697 +name: exocrine pancreas epithelium +def: "Epithelium lining the exocrine pancreas." [CALOHA:TS-2108] +synonym: "epithelium of exocrine pancreas" RELATED [CALOHA:TS-2108] +synonym: "exocrine pancreas epithelial cell" RELATED [CALOHA:TS-2108] +xref: CALOHA:TS-2108 +is_a: UBERON:0005911 ! endo-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000017 ! exocrine pancreas +relationship: part_of UBERON:0000017 ! exocrine pancreas + +[Term] +id: UBERON:0013698 +name: strand of pubic hair +def: "A hair in the frontal genital area of adolescent and adult humans, located on and around the sex organs, the crotch, and sometimes at the top of the inside of the thighs, in the pubic region around the pubis bone." [http://en.wikipedia.org/wiki/Pubic_hair] +subset: pheno_slim +synonym: "pubic hair" EXACT [FMA:54319] +xref: FMA:54319 +xref: http://linkedlifedata.com/resource/umls/id/C1305636 +xref: NCIT:C33424 +xref: Pubic:hair +xref: UMLS:C1305636 {source="ncithesaurus:Pubic_Hair"} +is_a: UBERON:0001037 ! strand of hair + +[Term] +id: UBERON:0013699 +name: strand of axillary hair +def: "A strand of hair that is part of a axilla." [OBOL:automatic] +subset: pheno_slim +synonym: "axilla hair" EXACT [] +synonym: "axillary hair" EXACT [FMA:54253] +synonym: "hair of axilla" EXACT [FMA:54253] +xref: FMA:54253 +xref: http://www.snomedbrowser.com/Codes/Details/280911007 +is_a: UBERON:0001037 ! strand of hair +intersection_of: UBERON:0001037 ! strand of hair +intersection_of: part_of UBERON:0009472 ! axilla +relationship: fma_set_term FMA:70756 +relationship: part_of UBERON:0009472 ! axilla + +[Term] +id: UBERON:0013700 +name: axial musculature +def: "Musculature of the head and neck, spine, and ribs." [HP:0003327] +xref: EHDAA2:0000159 +xref: EMAPA:18166 +is_a: UBERON:0001015 ! musculature +intersection_of: UBERON:0001015 ! musculature +intersection_of: attaches_to UBERON:0005944 ! axial skeleton plus cranial skeleton +intersection_of: part_of UBERON:0013701 ! main body axis +relationship: attaches_to UBERON:0005944 ! axial skeleton plus cranial skeleton +relationship: part_of UBERON:0013701 ! main body axis + +[Term] +id: UBERON:0013701 +name: main body axis +def: "A principle subdivision of an organism that includes all structures along the primary axis, typically the anterior-posterior axis, from head to tail, including structures of the body proper where present (for example, ribs), but excluding appendages." [https://orcid.org/0000-0002-6601-2165] +subset: non_informative +is_a: UBERON:0000475 ! organism subdivision + +[Term] +id: UBERON:0013702 +name: body proper +def: "The region of the organism associated with the visceral organs." [AEO:0000103] +subset: non_informative +synonym: "body" RELATED [AEO:0000103] +synonym: "whole body" RELATED [BTO:0001489] +xref: AEO:0000103 +xref: BTO:0001489 +xref: EMAPA:36031 +xref: FMA:231424 +is_a: UBERON:0000475 {source="AEO"} ! organism subdivision +relationship: part_of UBERON:0013701 ! main body axis + +[Term] +id: UBERON:0013703 +name: integumentary projection +def: "Anatomical projection that is part of the integumentl system." [http://orcid.org/0000-0002-6601-2165] +synonym: "skin projection" NARROW [] +is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0006003 ! integumentary adnexa +intersection_of: UBERON:0004529 ! anatomical projection +intersection_of: part_of UBERON:0002416 ! integumental system + +[Term] +id: UBERON:0013704 +name: notochordal canal +def: "A tubular passage that extends from the primitive pit into the head process during the early stages of embryonic development in mammals. It perforates the splanchnopleure layer so that the yolk sac and the amnion are connected temporarily." [http://medical-dictionary.thefreedictionary.com/notochordal+canal] +synonym: "chordal canal" RELATED [] +xref: FMA:293127 +xref: http://linkedlifedata.com/resource/umls/id/C1518428 +xref: NCIT:C34230 +xref: UMLS:C1518428 {source="ncithesaurus:Notochordal_Canal"} +is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0004111 ! anatomical conduit +intersection_of: part_of UBERON:0006268 ! notochordal process +relationship: part_of UBERON:0006268 ! notochordal process + +[Term] +id: UBERON:0013705 +name: fascia of Scarpa +def: "The deep layer (fascia of Scarpa) is a layer of the anterior abdominal wall." [http://en.wikipedia.org/wiki/Fascia_of_Scarpa] +synonym: "Colles fascia" RELATED [FMA:19923] +synonym: "Colles' fascia" EXACT [FMA:19923] +synonym: "deep layer of superficial fascia of abdomen" EXACT [FMA:19923] +synonym: "fascia of Scarpa" RELATED [http://en.wikipedia.org/wiki/Fascia_of_Scarpa] +synonym: "membranous layer of subcutaneous tissue of abdomen" EXACT [FMA:19923] +synonym: "membranous layer of superficial fascia of abdomen" EXACT [FMA:19923] +synonym: "Scarpa's fascia" EXACT [FMA:19923] +synonym: "Scarpa's fascia" RELATED [http://en.wikipedia.org/wiki/Fascia_of_Scarpa] +synonym: "stratum membranosum telae subcutaneae abdominis" EXACT [FMA:TA] +xref: FMA:19923 +xref: http://en.wikipedia.org/wiki/Fascia_of_Scarpa +is_a: UBERON:0003427 ! abdominal fat pad +relationship: part_of UBERON:0006635 ! anterior abdominal wall + +[Term] +id: UBERON:0013706 +name: bone spine +xref: FMA:82508 +is_a: UBERON:0004530 {source="cjm"} ! bony projection + +[Term] +id: UBERON:0013707 +name: iliac spine +def: "A bone spine that is part of a ilium." [OBOL:automatic] +xref: FMA:82509 +xref: http://www.snomedbrowser.com/Codes/Details/272712007 +xref: Iliac:spine +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0013706 ! bone spine +intersection_of: UBERON:0013706 ! bone spine +intersection_of: part_of UBERON:0001273 ! ilium +relationship: part_of UBERON:0001273 ! ilium + +[Term] +id: UBERON:0013708 +name: anterior superior iliac spine +def: "The anterior superior iliac spine (ASIS) is an important landmark of surface anatomy. It refers to the anterior extremity of the iliac crest of the pelvis, which provides attachment for the inguinal ligament, the sartorius muscle, and the tensor fasciae latae. ASIS provides a clue in identifying some other clinical landmarks, including: McBurney's point Gardner's line Roser-NC)laton line A - Anterior (front, like the face) S - Superior (towards the head, opposite to feet) I - Iliac S - Spine" [http://en.wikipedia.org/wiki/Anterior_superior_iliac_spine] +synonym: "anterior superior iliac spine" RELATED [http://en.wikipedia.org/wiki/Anterior_superior_iliac_spine] +synonym: "anterior superior iliac spine (volume)" EXACT [FMA:49465] +synonym: "anterior superior spine" RELATED [http://en.wikipedia.org/wiki/Anterior_superior_iliac_spine] +xref: FMA:49465 +xref: http://en.wikipedia.org/wiki/Anterior_superior_iliac_spine +xref: http://www.snomedbrowser.com/Codes/Details/182031001 +is_a: UBERON:0013712 ! anterior iliac spine +disjoint_from: UBERON:0013710 {source="lexical"} ! posterior superior iliac spine + +[Term] +id: UBERON:0013709 +name: anterior inferior iliac spine +def: "The anterior inferior iliac spine (AIIS) is a bony eminence on the anterior border of the hip bone, or, more precisely, the wing of the ilium (i.e. the upper lateral parts of the pelvis)." [http://en.wikipedia.org/wiki/Anterior_inferior_iliac_spine] +synonym: "anterior inferior iliac spine (volume)" EXACT [FMA:63614] +synonym: "anterior inferior spine" RELATED [http://en.wikipedia.org/wiki/Anterior_inferior_iliac_spine] +xref: FMA:63614 +xref: http://en.wikipedia.org/wiki/Anterior_inferior_iliac_spine +xref: http://www.snomedbrowser.com/Codes/Details/182030000 +is_a: UBERON:0013712 ! anterior iliac spine +disjoint_from: UBERON:0013711 {source="lexical"} ! posterior inferior iliac spine + +[Term] +id: UBERON:0013710 +name: posterior superior iliac spine +def: "The posterior border of the ala, shorter than the anterior, also presents two projections separated by a notch, the posterior superior iliac spine and the posterior inferior iliac spine. The posterior superior iliac spine serves for the attachment of the oblique portion of the posterior sacroiliac ligaments and the Multifidus." [http://en.wikipedia.org/wiki/Posterior_superior_iliac_spine] +synonym: "posterior superior iliac spine (volume)" EXACT [FMA:49468] +synonym: "posterior superior spine of the ilium" RELATED [http://en.wikipedia.org/wiki/Posterior_superior_iliac_spine] +xref: FMA:49468 +xref: http://en.wikipedia.org/wiki/Posterior_superior_iliac_spine +xref: http://www.snomedbrowser.com/Codes/Details/182032008 +is_a: UBERON:0013713 ! posterior iliac spine + +[Term] +id: UBERON:0013711 +name: posterior inferior iliac spine +def: "The posterior border of the ala, shorter than the anterior, also presents two projections separated by a notch, the posterior superior iliac spine and the posterior inferior iliac spine. The posterior inferior iliac spine corresponds with the posterior extremity of the auricular surface." [http://en.wikipedia.org/wiki/Posterior_inferior_iliac_spine] +synonym: "posterior inferior iliac spine (volume)" EXACT [FMA:63615] +synonym: "posterior inferior spine of the ilium" RELATED [] +xref: FMA:63615 +xref: http://en.wikipedia.org/wiki/Posterior_inferior_iliac_spine +xref: http://www.snomedbrowser.com/Codes/Details/182033003 +is_a: UBERON:0013713 ! posterior iliac spine + +[Term] +id: UBERON:0013712 +name: anterior iliac spine +is_a: UBERON:0013707 ! iliac spine +disjoint_from: UBERON:0013713 {source="lexical"} ! posterior iliac spine + +[Term] +id: UBERON:0013713 +name: posterior iliac spine +is_a: UBERON:0013707 ! iliac spine + +[Term] +id: UBERON:0013715 +name: ilio-marsupialis muscle +def: "A muscle that originates on the anterior iliac spine that passes through the inguinal canal before dividing into four branches, each attaching to a pouch nipple" [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/12432001] +synonym: "compressor mammae" RELATED [] +synonym: "ilio-marsupialis" EXACT [] +synonym: "M. compressor mammae" RELATED [] +synonym: "M. ilio-marsupialis" EXACT [] +is_a: UBERON:0001630 ! muscle organ +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: composed_primarily_of UBERON:0001134 ! skeletal muscle tissue +relationship: develops_from UBERON:0008844 {source="https://doi.org/10.1046/j.1469-7580.2002.00087.x"} ! gubernaculum (female) +relationship: has_developmental_contribution_from UBERON:0008844 {source="PMC1570914"} ! gubernaculum (female) +relationship: has_muscle_insertion UBERON:0002030 ! nipple +relationship: has_muscle_insertion UBERON:0009118 ! marsupium +relationship: has_muscle_origin UBERON:0013712 ! anterior iliac spine + +[Term] +id: UBERON:0013716 +name: branch of ilio-marsupialis muscle +def: "One of the branches of the ilio-marsupialis that attaches to a pouch nipple" [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/12432001] +synonym: "retractor mammae" RELATED [] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: has_muscle_insertion UBERON:0002030 ! nipple +relationship: has_muscle_insertion UBERON:0009118 ! marsupium +relationship: part_of UBERON:0013715 ! ilio-marsupialis muscle + +[Term] +id: UBERON:0013717 +name: superficial inguinal ring +def: "The exit of the inguinal canal." [http://en.wikipedia.org/wiki/Superficial_inguinal_ring] +synonym: "cutaneous inguinal ring" RELATED [http://en.wikipedia.org/wiki/Superficial_inguinal_ring] +synonym: "external abdominal ring" RELATED [http://en.wikipedia.org/wiki/Superficial_inguinal_ring] +synonym: "external inguinal ring" RELATED [http://en.wikipedia.org/wiki/Superficial_inguinal_ring] +synonym: "external ring" RELATED [http://en.wikipedia.org/wiki/Superficial_inguinal_ring] +synonym: "subcutaneous inguinal ring" RELATED [http://en.wikipedia.org/wiki/Superficial_inguinal_ring] +xref: FMA:19926 +xref: http://en.wikipedia.org/wiki/Superficial_inguinal_ring +xref: http://www.snomedbrowser.com/Codes/Details/361907002 +xref: NCIT:C32547 +is_a: UBERON:0006674 ! inguinal ring +intersection_of: UBERON:0006674 ! inguinal ring +intersection_of: in_superficial_part_of UBERON:0006204 ! inguinal ligament +relationship: in_superficial_part_of UBERON:0006204 ! inguinal ligament + +[Term] +id: UBERON:0013718 +name: dartos muscle +def: "The dartos fascia is a fat-free layer of smooth muscular fiber outside the external spermatic fascia but below the skin. It is a continuation of Scarpa's Fascia which is a membranous layer of the subcutaneous tissue in the abdominal wall." [http://en.wikipedia.org/wiki/Dartos] +synonym: "dartos muscle" RELATED [http://en.wikipedia.org/wiki/Dartos] +synonym: "dartos tunic" RELATED [http://en.wikipedia.org/wiki/Dartos] +synonym: "tunica dartos" RELATED LATIN [http://en.wikipedia.org/wiki/Dartos] +xref: FMA:18088 +xref: http://en.wikipedia.org/wiki/Dartos +is_a: UBERON:0008982 ! fascia +relationship: continuous_with UBERON:0013705 ! fascia of Scarpa + +[Term] +id: UBERON:0013719 +name: dartos muscle of scrotum +def: "A dartos muscle that is part of a male reproductive system." [OBOL:automatic] +synonym: "dartos layer of scrotum" EXACT [] +synonym: "dartos tunic" RELATED [http://en.wikipedia.org/wiki/Dartos] +xref: FMA:27647 +xref: http://www.snomedbrowser.com/Codes/Details/279582001 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0013718 ! dartos muscle +intersection_of: UBERON:0013718 ! dartos muscle +intersection_of: part_of UBERON:0000079 ! male reproductive system +relationship: part_of UBERON:0001300 ! scrotum + +[Term] +id: UBERON:0013720 +name: dartos muscle of labia majora +def: "A dartos muscle that is part of a female reproductive system." [OBOL:automatic] +synonym: "dartos layer of labia" EXACT [] +synonym: "dartos muliebris" RELATED [http://en.wikipedia.org/wiki/Dartos] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0013718 ! dartos muscle +intersection_of: UBERON:0013718 ! dartos muscle +intersection_of: part_of UBERON:0000474 ! female reproductive system +relationship: part_of UBERON:0004085 ! labium majora + +[Term] +id: UBERON:0013721 +name: deep inguinal ring +def: "The entrance to the inguinal canal." [http://en.wikipedia.org/wiki/Deep_inguinal_ring] +synonym: "abdominal inguinal ring" RELATED [http://en.wikipedia.org/wiki/Deep_inguinal_ring] +synonym: "annulus inguinalis profundus" RELATED LATIN [http://en.wikipedia.org/wiki/Deep_inguinal_ring] +synonym: "internal abdominal ring" RELATED [http://en.wikipedia.org/wiki/Deep_inguinal_ring] +synonym: "internal inguinal ring" RELATED [http://en.wikipedia.org/wiki/Deep_inguinal_ring] +synonym: "internal ring" RELATED [http://en.wikipedia.org/wiki/Deep_inguinal_ring] +xref: FMA:19927 +xref: http://en.wikipedia.org/wiki/Deep_inguinal_ring +xref: http://www.snomedbrowser.com/Codes/Details/278831000 +xref: NCIT:C32832 +is_a: UBERON:0006674 ! inguinal ring +intersection_of: UBERON:0006674 ! inguinal ring +intersection_of: in_deep_part_of UBERON:0006204 ! inguinal ligament +relationship: in_deep_part_of UBERON:0006204 ! inguinal ligament + +[Term] +id: UBERON:0013725 +name: anterior talofibular ligament +def: "The anterior talofibular ligament is a ligament in the ankle. It passes from the anterior margin of the fibular malleolus, anteriorly and medially, to the talus bone, in front of its lateral articular facet. It is one of the lateral ligaments of the ankle and prevents the foot from sliding forward in relation to the shin." [http://en.wikipedia.org/wiki/Anterior_talofibular_ligament] +synonym: "ligamentum talofibulare anterius" EXACT LATIN [http://en.wikipedia.org/wiki/Anterior_talofibular_ligament] +xref: FMA:44083 +xref: http://en.wikipedia.org/wiki/Anterior_talofibular_ligament +xref: http://www.snomedbrowser.com/Codes/Details/242467001 +is_a: UBERON:0011970 {source="FMA"} ! talofibular ligament +disjoint_from: UBERON:0013726 {source="lexical"} ! posterior talofibular ligament + +[Term] +id: UBERON:0013726 +name: posterior talofibular ligament +def: "The posterior talofibular ligament, runs almost horizontally from the depression at the medial and back part of the fibular malleolus (lateral malleolus) to a prominent tubercle on the posterior surface of the talus immediately lateral to the groove for the tendon of the flexor hallucis longus." [http://en.wikipedia.org/wiki/Posterior_talofibular_ligament] +synonym: "ligamentum talofibulare posterius" EXACT LATIN [http://en.wikipedia.org/wiki/Posterior_talofibular_ligament] +xref: FMA:44084 +xref: http://en.wikipedia.org/wiki/Posterior_talofibular_ligament +xref: http://www.snomedbrowser.com/Codes/Details/242570004 +is_a: UBERON:0011970 {source="FMA"} ! talofibular ligament + +[Term] +id: UBERON:0013727 +name: notochordal fluid +def: "Fluid contained within the notochordal canal" [http://animaldiversity.org/accounts/Latimeria_chalumnae/, http://orcid.org/0000-0002-6601-2165] +comment: Distinct feature of coelocanths +synonym: "notochord fluid" EXACT [] +synonym: "portion of notochordal fluid" EXACT [] +is_a: UBERON:0006314 ! bodily fluid +intersection_of: UBERON:0006314 ! bodily fluid +intersection_of: located_in UBERON:0013704 ! notochordal canal +intersection_of: part_of UBERON:0036242 ! post-embryonic notochord +relationship: located_in UBERON:0013704 ! notochordal canal +relationship: part_of UBERON:0036242 ! post-embryonic notochord + +[Term] +id: UBERON:0013730 +name: mycetome +def: "A specialized organ that is linked to the gut in beetles and host to a symbiotic yeast. The yeast cells assist in the digestion of less nutritious foods, supply needed B-vitamins and sterols, and provide resistance to certain toxins." [ENVO:01000166, http://en.wikipedia.org/wiki/Lasioderma_serricorne, PLB:plb] +xref: ENVO:01000166 +is_a: UBERON:0010001 ! cell cluster organ +relationship: part_of UBERON:0003917 ! arthropod fat body + +[Term] +id: UBERON:0013731 +name: basilar papilla +def: "The auditory sensory organ of lizards, amphibians, and birds, which is homologous to the Corti in mammals." [http://en.wikipedia.org/wiki/Basilar_papilla] +synonym: "basilar papillae" RELATED PLURAL [http://orcid.org/0000-0002-6601-2165] +synonym: "papilla basilaris" EXACT LATIN [AAO:0011018] +synonym: "sensory epithelium of recessus basilaris" RELATED [] +xref: AAO:0011018 +xref: VHOG:0001567 +xref: XAO:0003145 +is_a: UBERON:0000020 ! sense organ +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001855 {source="MA-abduced"} ! cochlear duct of membranous labyrinth + +[Term] +id: UBERON:0013732 +name: vestibule of nasal cavity +def: "A tube leading from the external naris to the nasal cavity." [AAO:0000984, AAO:EJS] +xref: AAO:0000984 +is_a: UBERON:0001349 ! externally connecting tube lumen +relationship: part_of UBERON:0002268 {source="AAO"} ! olfactory organ + +[Term] +id: UBERON:0013733 +name: caudal linear nucleus +synonym: "CLi" EXACT ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/21653852] +synonym: "posterior linear nucleus" EXACT [OBOL:automatic] +xref: FMA:231003 +xref: HBA:9470 +is_a: UBERON:0002308 {source="FMA"} ! nucleus of brain +disjoint_from: UBERON:0013734 {source="lexical"} ! rostral linear nucleus + +[Term] +id: UBERON:0013734 +name: rostral linear nucleus +def: "Nucleus of the medial ventral tegmental area, originally identified in the rat but also in cat, monkey and human, comprising an average of 7% volume of the VTA across the different species, with the largest being present in the cat." [NLX:144319] +synonym: "anterior linear nucleus" EXACT [OBOL:automatic] +synonym: "RLi" EXACT ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/16292327] +synonym: "rostral linear nucleus of the raphe" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/21653852] +xref: BAMS:LR +xref: DHBA:12234 +xref: DMBA:16748 +xref: HBA:9471 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1808 +xref: MBA:197 +xref: NLX:144319 +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus +relationship: part_of UBERON:0002691 {source="NIFSTD"} ! ventral tegmental area + +[Term] +id: UBERON:0013736 +name: interfascicular linear nucleus +synonym: "central linear nucleus" RELATED [] +synonym: "IF" RELATED ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/21653852] +synonym: "intermediate linear nucleus" RELATED [FMA:77503] +xref: DHBA:12262 +xref: FMA:77503 +xref: HBA:9472 +xref: MBA:12 +is_a: UBERON:0002308 ! nucleus of brain + +[Term] +id: UBERON:0013737 +name: paranigral nucleus +synonym: "PN" BROAD ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/21653852] +xref: DHBA:12265 +xref: FMA:77497 +xref: HBA:9474 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1252 +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0007414 {source="FMA"} ! nucleus of midbrain tegmentum +is_a: UBERON:0009661 ! midbrain nucleus +relationship: part_of UBERON:0002691 {source="http://www.ncbi.nlm.nih.gov/pubmed/21653852"} ! ventral tegmental area + +[Term] +id: UBERON:0013738 +name: parabrachial pigmental nucleus +def: "Nucleus identified in the medial ventral tegmental area that borders the red nucleus and superior cerebellar peduncle dorsally, the medial lemniscus laterally, the subtantia nigra pars compacta and paranigral nucleus ventrally and the rostral linear nucleus and interfascicular nucleus medially. Generally, the largest nucleus in the ventral tegmental area, occupying an average of 50% of the total volume as measured in rat, cat, monkey and human." [NLX:144307] +synonym: "parabrachial pigmented nucleus" EXACT [NLX:144307] +synonym: "PBP" BROAD ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/21653852] +xref: BAMS:PBP +xref: DHBA:12263 +xref: FMA:77496 +xref: HBA:9473 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2264 +xref: NLX:144307 +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0007414 ! nucleus of midbrain tegmentum +is_a: UBERON:0009661 ! midbrain nucleus +relationship: part_of UBERON:0002691 {source="http://www.ncbi.nlm.nih.gov/pubmed/21653852", source="NIF"} ! ventral tegmental area + +[Term] +id: UBERON:0013739 +name: base of crypt of Lieberkuhn +def: "The basal portion (further from lumen) of an intestinal crypt. Contains multipotent stem cells. Stem cells in the crypts divide to form daughter cells. One daughter cell from each stem cell division is retained as a stem cell. The other becomes committed to differentiate along one of four pathways to become an enterocyte, enteroendocrine cell, goblet cell or Paneth cell." [http://orcid.org/0000-0002-6601-2165, UBERON:md] +synonym: "basal portion of intestinal gland" EXACT [] +synonym: "base of intestinal gland" EXACT [] +synonym: "base part of epithelium of intestinal gland" EXACT [] +is_a: UBERON:0011184 ! epithelium of crypt of Lieberkuhn +intersection_of: UBERON:0000483 ! epithelium +intersection_of: continuous_with UBERON:0013740 ! wall of crypt of Lieberkuhn +intersection_of: part_of UBERON:0001983 ! crypt of Lieberkuhn +relationship: continuous_with UBERON:0013740 ! wall of crypt of Lieberkuhn + +[Term] +id: UBERON:0013740 +name: wall of crypt of Lieberkuhn +def: "The lateral parts of an intestinal crypt, continuous distally with the base and proximally with the intestinal villus epithelium." [http://orcid.org/0000-0002-6601-2165, UBERON:md] +synonym: "wall of intestinal gland" EXACT [] +synonym: "wall part of epithelium of intestinal gland" EXACT [] +is_a: UBERON:0011184 ! epithelium of crypt of Lieberkuhn +intersection_of: UBERON:0000483 ! epithelium +intersection_of: continuous_with UBERON:0013739 ! base of crypt of Lieberkuhn +intersection_of: part_of UBERON:0001983 ! crypt of Lieberkuhn +relationship: continuous_with UBERON:0013636 ! epithelium of intestinal villus +relationship: continuous_with UBERON:0013739 ! base of crypt of Lieberkuhn + +[Term] +id: UBERON:0013741 +name: base of crypt of Lieberkuhn of large intestine +def: "A base of crypt of Lieberkuhn that is part of a large intestine." [OBOL:automatic] +is_a: UBERON:0001278 ! epithelium of large intestine +is_a: UBERON:0013739 ! base of crypt of Lieberkuhn +intersection_of: UBERON:0013739 ! base of crypt of Lieberkuhn +intersection_of: part_of UBERON:0000059 ! large intestine + +[Term] +id: UBERON:0013742 +name: wall of crypt of Lieberkuhn of large intestine +def: "A wall of crypt of Lieberkuhn that is part of a large intestine." [OBOL:automatic] +is_a: UBERON:0001278 ! epithelium of large intestine +is_a: UBERON:0013740 ! wall of crypt of Lieberkuhn +intersection_of: UBERON:0013740 ! wall of crypt of Lieberkuhn +intersection_of: part_of UBERON:0000059 ! large intestine + +[Term] +id: UBERON:0013743 +name: base of crypt of Lieberkuhn of small intestine +def: "The basal portion (further from lumen) of a intestinal crypt that is located in the small intestine." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0001902 ! epithelium of small intestine +is_a: UBERON:0013739 ! base of crypt of Lieberkuhn +intersection_of: UBERON:0013739 ! base of crypt of Lieberkuhn +intersection_of: part_of UBERON:0002108 ! small intestine + +[Term] +id: UBERON:0013744 +name: wall of crypt of Lieberkuhn of small intestine +def: "The lateral parts of an intestinal crypt that is located in the small intestine, continuous distally with the base and proximally with the intestinal villus epithelium." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0001902 ! epithelium of small intestine +is_a: UBERON:0013740 ! wall of crypt of Lieberkuhn +intersection_of: UBERON:0013740 ! wall of crypt of Lieberkuhn +intersection_of: part_of UBERON:0002108 ! small intestine + +[Term] +id: UBERON:0013745 +name: zona intermedia of adrenal gland +def: "A zone of the adrenal cortex located between the zona glomerulosa and the zona fasciculata." [http://www.endotext.org/adrenal/adrenal1/adrenal1.html] +comment: currently postulated to be a site of initiation of adrenocyte proliferation and differentiation and a zone containing the adrenal cortical stem cells. Present in some rat species. +subset: pheno_slim +synonym: "zona intermedia" EXACT [] +synonym: "zona intermedia of suprarenal gland" EXACT [] +is_a: UBERON:0009753 {source="cjm"} ! adrenal gland cortex zone + +[Term] +id: UBERON:0013746 +name: basibranchial element +def: "Endochondral element that is ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton." [https://github.com/obophenotype/uberon/issues/205, TAO:wd] +synonym: "basibranchial" EXACT [ZFA:0000170] +synonym: "basibranchials" EXACT PLURAL [ZFA:0000170] +synonym: "copula 1" RELATED [] +synonym: "copula I" RELATED [AAO:0000686] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0005886 {source="ZFA"} ! post-hyoid pharyngeal arch skeleton + +[Term] +id: UBERON:0013747 +name: basibranchial cartilage +def: "A basibranchial element that is cartilage. Basibranchial elements are ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton" [http://orcid.org/0000-0002-6601-2165, TAO:wd] +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:0013746 ! basibranchial element +intersection_of: UBERON:0013746 ! basibranchial element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0013748 +name: ulnar metaphysis +def: "A metaphysis that is part of a ulna." [OBOL:automatic] +subset: pheno_slim +synonym: "metaphysis of ulna" EXACT [FMA:33767] +xref: FMA:33767 +is_a: UBERON:0001438 ! metaphysis +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001438 ! metaphysis +intersection_of: part_of UBERON:0001424 ! ulna +relationship: part_of UBERON:0001010 {source="FMA"} ! diaphysis of ulna + +[Term] +id: UBERON:0013749 +name: metaphysis of humerus +def: "A metaphysis that is part of a metaphysis." [OBOL:automatic] +subset: pheno_slim +synonym: "diaphyseal end of humerus" EXACT [FMA:32830] +synonym: "humeral metaphysis" EXACT [FMA:32830] +xref: FMA:32830 +is_a: UBERON:0001438 ! metaphysis +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001438 ! metaphysis +intersection_of: part_of UBERON:0000976 ! humerus +relationship: part_of UBERON:0000976 ! humerus + +[Term] +id: UBERON:0013750 +name: metaphysis of tibia +def: "A metaphysis that is part of a tibia." [OBOL:automatic] +subset: pheno_slim +synonym: "tibial metaphysis" EXACT [FMA:33135] +xref: EMAPA:37772 {source="MA:th"} +xref: FMA:33135 +xref: MA:0003106 +is_a: UBERON:0001438 ! metaphysis +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001438 ! metaphysis +intersection_of: part_of UBERON:0000979 ! tibia +relationship: part_of UBERON:0000979 ! tibia + +[Term] +id: UBERON:0013751 +name: metaphysis of radius +def: "A metaphysis that is part of a radius bone." [OBOL:automatic] +subset: pheno_slim +synonym: "radial metaphysis" EXACT [FMA:33789] +xref: FMA:33789 +is_a: UBERON:0001438 ! metaphysis +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001438 ! metaphysis +intersection_of: part_of UBERON:0001423 ! radius bone +relationship: part_of UBERON:0001423 ! radius bone + +[Term] +id: UBERON:0013752 +name: diaphysis of metacarpal bone +def: "A diaphysis that is part of a metacarpal bone." [OBOL:automatic] +synonym: "body of metacarpal" EXACT [FMA:33804] +synonym: "corpus ossis metacarpi" EXACT [FMA:TA] +synonym: "metacarpal bone diaphysis" EXACT [FMA:33804] +synonym: "shaft of metacarpal" EXACT [FMA:33804] +synonym: "shaft of metacarpal bone" EXACT [FMA:33804] +xref: FMA:33804 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004769 ! diaphysis +intersection_of: UBERON:0004769 ! diaphysis +intersection_of: part_of UBERON:0002374 ! metacarpal bone +relationship: part_of UBERON:0002374 ! metacarpal bone + +[Term] +id: UBERON:0013753 +name: distal epiphysis of metacarpal bone +def: "A distal epiphysis that is part of a metacarpal bone." [OBOL:automatic] +subset: pheno_slim +synonym: "caput ossis metacarpi" EXACT [FMA:TA] +synonym: "distal end of metacarpal bone" EXACT [FMA:33798] +synonym: "head of metacarpal bone" EXACT [FMA:33798] +synonym: "lower end of metacarpal bone" EXACT [FMA:33798] +xref: FMA:33798 +is_a: UBERON:0004379 ! distal epiphysis +is_a: UBERON:0004390 ! epiphysis of metacarpal bone +intersection_of: UBERON:0004379 ! distal epiphysis +intersection_of: part_of UBERON:0002374 ! metacarpal bone + +[Term] +id: UBERON:0013754 +name: integumentary system layer +def: "A organ component layer that is part of a integumental system." [OBOL:automatic] +subset: non_informative +synonym: "layer of skin" NARROW [] +synonym: "skin layer" NARROW [] +xref: http://www.snomedbrowser.com/Codes/Details/314820002 +is_a: UBERON:0004923 ! organ component layer +intersection_of: UBERON:0004923 ! organ component layer +intersection_of: part_of UBERON:0002416 ! integumental system +relationship: part_of UBERON:0002416 ! integumental system + +[Term] +id: UBERON:0013755 +name: arterial blood +def: "A blood that is part of a artery." [OBOL:automatic] +subset: pheno_slim +synonym: "arterial blood" EXACT [FMA:83066] +synonym: "blood in artery" EXACT [FMA:83066] +synonym: "portion of arterial blood" EXACT [FMA:83066] +xref: FMA:83066 +is_a: UBERON:0000178 ! blood +intersection_of: UBERON:0000178 ! blood +intersection_of: part_of UBERON:0001637 ! artery +relationship: part_of UBERON:0001637 ! artery + +[Term] +id: UBERON:0013756 +name: venous blood +def: "A blood that is part of a vein." [OBOL:automatic] +synonym: "blood in vein" EXACT [FMA:83067] +synonym: "portion of venous blood" EXACT [FMA:83067] +synonym: "venous blood" EXACT [FMA:83067] +xref: FMA:83067 +is_a: UBERON:0000178 ! blood +intersection_of: UBERON:0000178 ! blood +intersection_of: part_of UBERON:0001638 ! vein +relationship: part_of UBERON:0001638 ! vein + +[Term] +id: UBERON:0013757 +name: capillary blood +def: "A blood that is part of a capillary." [OBOL:automatic] +synonym: "blood in capillary" EXACT [] +synonym: "portion of blood in capillary" EXACT [FMA:263901] +synonym: "portion of capillary blood" EXACT [] +xref: FMA:263901 +xref: NCIT:C32212 +is_a: UBERON:0000178 ! blood +intersection_of: UBERON:0000178 ! blood +intersection_of: part_of UBERON:0001982 ! capillary +relationship: part_of UBERON:0001982 ! capillary + +[Term] +id: UBERON:0013758 +name: cervical os +def: "One of two openings in the uterine cervix." [http://orcid.org/0000-0002-6601-2165] +synonym: "cervical opening" RELATED [] +synonym: "uterine cervix opening" RELATED [] +xref: FMA:20422 +is_a: UBERON:0000161 ! orifice +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0000161 ! orifice +intersection_of: part_of UBERON:0000002 ! uterine cervix +relationship: part_of UBERON:0000002 ! uterine cervix + +[Term] +id: UBERON:0013759 +name: internal cervical os +def: "Opening of uterine cervix into the body of the uterus." [http://orcid.org/0000-0002-6601-2165] +synonym: "internal orifice" RELATED [http://en.wikipedia.org/wiki/Internal_orifice_of_the_uterus] +synonym: "internal os" RELATED [FMA:17747] +synonym: "internal os" RELATED [http://en.wikipedia.org/wiki/Internal_orifice_of_the_uterus] +xref: FMA:17747 +xref: http://en.wikipedia.org/wiki/Internal_orifice_of_the_uterus +xref: http://www.snomedbrowser.com/Codes/Details/279886007 +is_a: UBERON:0013758 ! cervical os +intersection_of: UBERON:0013758 ! cervical os +intersection_of: continuous_with UBERON:0009853 ! body of uterus +relationship: continuous_with UBERON:0009853 ! body of uterus + +[Term] +id: UBERON:0013760 +name: external cervical os +def: "Opening of uterine cervix into the vagina." [http://orcid.org/0000-0002-6601-2165] +synonym: "external os" RELATED [http://en.wikipedia.org/wiki/External_orifice_of_the_uterus] +synonym: "external os of uterus" EXACT [FMA:76836] +synonym: "ostium of uterus" RELATED [http://en.wikipedia.org/wiki/External_orifice_of_the_uterus] +synonym: "ostium uteri" EXACT [FMA:TA] +xref: FMA:76836 +xref: http://en.wikipedia.org/wiki/External_orifice_of_the_uterus +xref: http://linkedlifedata.com/resource/umls/id/C1512165 +xref: http://www.snomedbrowser.com/Codes/Details/362255005 +xref: NCIT:C32491 +xref: UMLS:C1512165 {source="ncithesaurus:Ectocervical_Os"} +is_a: UBERON:0013758 ! cervical os +intersection_of: UBERON:0013758 ! cervical os +intersection_of: continuous_with UBERON:0000996 ! vagina +relationship: connects UBERON:0000002 ! uterine cervix +relationship: connects UBERON:0000996 ! vagina +relationship: continuous_with UBERON:0000996 ! vagina +relationship: part_of UBERON:0012249 ! ectocervix + +[Term] +id: UBERON:0013761 +name: cervical cavity +def: "The cavity formed by the walls of the cervix." [http://orcid.org/0000-0002-6601-2165] +synonym: "canal of the cervix" RELATED [http://en.wikipedia.org/wiki/Canal_of_the_cervix] +synonym: "cavity of cervix" RELATED [BTO:0002249] +synonym: "cervical canal" RELATED [http://en.wikipedia.org/wiki/Canal_of_the_cervix] +synonym: "cervical canal of uterus" RELATED [BTO:0002249] +synonym: "endocervical" RELATED [http://en.wikipedia.org/wiki/Canal_of_the_cervix] +synonym: "endocervical canal" RELATED [BTO:0002249] +synonym: "endocervical canal" RELATED [http://en.wikipedia.org/wiki/Canal_of_the_cervix] +synonym: "endocervix" RELATED [http://en.wikipedia.org/wiki/Canal_of_the_cervix] +synonym: "lumen of cervix of uterus" EXACT [FMA:17746] +xref: BTO:0002249 +xref: FMA:17746 +xref: http://en.wikipedia.org/wiki/Canal_of_the_cervix +is_a: UBERON:0002553 ! anatomical cavity +intersection_of: UBERON:0002553 ! anatomical cavity +intersection_of: luminal_space_of UBERON:0000002 ! uterine cervix +relationship: luminal_space_of UBERON:0000002 ! uterine cervix +relationship: part_of UBERON:0000002 ! uterine cervix + +[Term] +id: UBERON:0013763 +name: obsolete sensory epithelium of spiral organ +is_obsolete: true + +[Term] +id: UBERON:0013764 +name: common crus of semicircular duct +def: "A nonampullary end of the superior or posterior semicircular ducts." [http://www.medilexicon.com/medicaldictionary.php?s=common+membranous+limb+of+semicircular+ducts] +synonym: "common crus" BROAD [] +synonym: "common membranous limb of membranous semicircular ducts" EXACT [] +synonym: "common membranous limb of semicircular ducts" EXACT [FMA:71881] +synonym: "crus membranaceum commune ductus semicircularis" EXACT LATIN [FMA:TA] +synonym: "crus membranaceum commune ductuum semicircularium" EXACT LATIN [] +xref: FMA:71881 +xref: TAO:0005411 +xref: ZFA:0005411 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010000 ! multicellular anatomical structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001856 ! semicircular duct + +[Term] +id: UBERON:0013765 +name: digestive system element +def: "Any of the organs or elements that are part of the digestive system. Examples: tongue, esophagus, spleen, crop, lunge feeding organ, tooth elements." [http://orcid.org/0000-0002-6601-2165] +subset: grouping_class +subset: pheno_slim +synonym: "digestive organ" EXACT [] +synonym: "digestive system organ" EXACT [] +xref: EMAPA:37843 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/272627002 +is_a: UBERON:0000062 ! organ +intersection_of: UBERON:0000062 ! organ +intersection_of: part_of UBERON:0001007 ! digestive system +relationship: part_of UBERON:0001007 ! digestive system + +[Term] +id: UBERON:0013766 +name: epicanthal fold +def: "A fold of skin of the upper eyelid that partially covers the inner corner of the eye." [MGI:smb, VT:0006168] +subset: pheno_slim +synonym: "epicanthic fold" EXACT [] +synonym: "epicanthus" EXACT [] +synonym: "eye fold" EXACT [] +synonym: "medial canthic fold" EXACT [FMA:59370] +synonym: "palpebronasal fold" EXACT [FMA:59370] +synonym: "plica palpebronasalis" EXACT LATIN [] +xref: Epicanthic:fold +xref: FMA:59370 +xref: http://www.snomedbrowser.com/Codes/Details/74824007 +is_a: UBERON:0001457 ! skin of eyelid +relationship: part_of UBERON:0001712 ! upper eyelid + +[Term] +id: UBERON:0013767 +name: frontal process of maxilla +def: "A plate of bone from the maxilla that that projects upward, medialward, and backward, by the side of the nose, forming part of its lateral boundary[WP,modified]." [http://en.wikipedia.org/wiki/Frontal_process_of_maxilla] +synonym: "frontal appendage of maxilla" RELATED [FMA:52894] +synonym: "frontal process of the maxilla" RELATED [http://en.wikipedia.org/wiki/Frontal_process_of_maxilla] +synonym: "nasal process of maxilla" RELATED [http://en.wikipedia.org/wiki/Frontal_process_of_maxilla] +synonym: "processus frontalis (maxilla)" EXACT [FMA:52894] +synonym: "processus frontalis maxillae" RELATED LATIN [http://en.wikipedia.org/wiki/Frontal_process_of_maxilla] +xref: FMA:52894 +xref: http://en.wikipedia.org/wiki/Frontal_process_of_maxilla +xref: http://www.snomedbrowser.com/Codes/Details/368869008 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002397 ! maxilla + +[Term] +id: UBERON:0013768 +name: great vessel of heart +def: "Great vessels is a term used to refer collectively to the large vessels that bring blood to and from the heart." [http://en.wikipedia.org/wiki/Great_vessels] +comment: Groupings may vary - typically pulmonary vessels and aorta and vena cavae +subset: grouping_class +synonym: "great vessel" BROAD [] +synonym: "great vessel of thorax" EXACT [] +xref: EMAPA:36460 +xref: Great:vessels +xref: http://www.snomedbrowser.com/Codes/Details/304066000 +is_a: UBERON:0001981 ! blood vessel + +[Term] +id: UBERON:0013769 +name: uterine lumen +def: "A organ cavity that is part of a uterus." [OBOL:automatic] +synonym: "cavity of uterus" EXACT [FMA:17745] +synonym: "uterine cavity" EXACT [FMA:17745] +synonym: "uterine space" EXACT [] +xref: EMAPA:36273 +xref: FMA:17745 +xref: Uterine:cavity +is_a: UBERON:0002558 ! organ cavity +intersection_of: UBERON:0002558 ! organ cavity +intersection_of: part_of UBERON:0000995 ! uterus +relationship: part_of UBERON:0000995 ! uterus + +[Term] +id: UBERON:0013770 +name: intermammary cleft +synonym: "intermammary cleavage" RELATED [] +synonym: "intermammary sulcus" RELATED [] +xref: FMA:55264 +is_a: UBERON:0006800 {source="FMA"} ! anatomical line +relationship: part_of UBERON:0002100 ! trunk + +[Term] +id: UBERON:0013771 +name: line connecting laterally paired nipples +def: "Line across midline connecting a left and right nipples." [http://orcid.org/0000-0002-6601-2165] +synonym: "intermammary line" EXACT [] +is_a: UBERON:0006800 ! anatomical line +relationship: connects UBERON:0013772 ! left nipple +relationship: connects UBERON:0013773 ! right nipple +relationship: part_of UBERON:0002100 ! trunk + +[Term] +id: UBERON:0013772 +name: left nipple +def: "A nipple that is in_the_left_side_of a body proper." [OBOL:automatic] +subset: pheno_slim +xref: FMA:223695 +is_a: UBERON:0002030 ! nipple +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0002030 ! nipple +intersection_of: in_left_side_of UBERON:0013702 ! body proper +relationship: in_left_side_of UBERON:0013702 ! body proper +relationship: part_of UBERON:0013702 ! body proper + +[Term] +id: UBERON:0013773 +name: right nipple +def: "A nipple that is in_the_right_side_of a body proper." [OBOL:automatic] +subset: pheno_slim +xref: FMA:223693 +is_a: UBERON:0002030 ! nipple +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0002030 ! nipple +intersection_of: in_right_side_of UBERON:0013702 ! body proper +relationship: in_right_side_of UBERON:0013702 ! body proper +relationship: part_of UBERON:0013702 ! body proper + +[Term] +id: UBERON:0013774 +name: diaphysis of metatarsal bone +def: "A diaphysis that is part of a metatarsal bone." [OBOL:automatic] +subset: pheno_slim +synonym: "diaphysis of metatarsal" EXACT [] +synonym: "metatarsal bone diaphysis" EXACT [FMA:33826] +synonym: "metatarsal diaphysis" EXACT [] +synonym: "shaft of metatarsal bone" EXACT [FMA:33826] +xref: FMA:33826 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004769 ! diaphysis +intersection_of: UBERON:0004769 ! diaphysis +intersection_of: part_of UBERON:0001448 ! metatarsal bone +relationship: part_of UBERON:0001448 ! metatarsal bone + +[Term] +id: UBERON:0013776 +name: skin of palmar/plantar part of autopod +def: "A zone of skin that is part of a palmar/plantar part of autopod." [OBOL:automatic] +is_a: UBERON:0015790 ! autopod skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0008837 ! palmar/plantar part of autopod +relationship: part_of UBERON:0008837 ! palmar/plantar part of autopod + +[Term] +id: UBERON:0013777 +name: skin of palm of manus +def: "A zone of skin that is part of a palmar part of manus." [OBOL:automatic] +subset: pheno_slim +synonym: "palmar skin of hand" EXACT [FMA:38301] +synonym: "skin of palmar area of hand" EXACT [] +xref: FMA:38301 +xref: http://www.snomedbrowser.com/Codes/Details/181544004 +is_a: UBERON:0001519 ! skin of manus +is_a: UBERON:0013776 ! skin of palmar/plantar part of autopod +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0008878 ! palmar part of manus +relationship: part_of UBERON:0008878 ! palmar part of manus + +[Term] +id: UBERON:0013778 +name: skin of sole of pes +def: "A zone of skin that is part of a skin of pes." [OBOL:automatic] +subset: pheno_slim +synonym: "plantar skin of foot" EXACT [FMA:37849] +synonym: "skin of plantar part of foot" EXACT [FMA:37849] +synonym: "skin of sole of foot" EXACT [FMA:37849] +xref: FMA:37849 +xref: http://www.snomedbrowser.com/Codes/Details/181566006 +is_a: UBERON:0001513 ! skin of pes +is_a: UBERON:0013776 ! skin of palmar/plantar part of autopod +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0008338 ! plantar part of pes +relationship: part_of UBERON:0008338 ! plantar part of pes + +[Term] +id: UBERON:0014169 +name: nigrostriatal tract +def: "The term nigrostriatal fibers refers to a dopaminergic fiber pathway connecting the substantia nigra with the striatum. It is not readily distinguished in myelin-stained cross-sections (Carpenter-83)." [BIRNLEX:4107] +synonym: "comb bundle" EXACT [BIRNLEX:4107] +synonym: "comb bundle" RELATED [BIRNLEX:4107] +synonym: "nigrostriatal bundle" EXACT [BIRNLEX:4107] +synonym: "nigrostriatal bundle" RELATED [BIRNLEX:4107] +synonym: "nigrostriatal fibers" EXACT [BIRNLEX:4107] +synonym: "nigrostriatal fibers" RELATED [BIRNLEX:4107] +synonym: "nigrostriatal tract" EXACT [BIRNLEX:4107] +synonym: "nucleus caudalis centralis oculomotorii" RELATED LATIN [NeuroNames:500] +synonym: "nucleus centralis nervi oculomotorii" RELATED LATIN [NeuroNames:500] +synonym: "tegmentum mesencephalicum" RELATED LATIN [NeuroNames:491] +xref: BAMS:ns +xref: BAMS:nst +xref: BIRNLEX:4107 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=491 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=500 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=500 {source="BIRNLEX:4107"} +xref: http://linkedlifedata.com/resource/umls/id/C0815010 +xref: MBA:102 +xref: UMLS:C0815010 {source="BIRNLEX:4107"} +is_a: UBERON:0007702 {source="NIFSTD"} ! tract of brain + +[Term] +id: UBERON:0014277 +name: piriform cortex layer 1 +def: "Most superficial of 3 cytoarchitecturally defined layers of the piriform cortex, characterized by few neuronal cell bodies. It has been divided into a superficial part and a deep part." [NLXANAT:091003] +synonym: "layer 1 of piriform cortex" EXACT [NLXANAT:091003] +synonym: "layer 1 of piriform cortex" RELATED [NLXANAT:091003] +synonym: "piriform cortex layer 1" EXACT [NLXANAT:091003] +synonym: "piriform cortex plexiform layer" EXACT [NLXANAT:091003] +synonym: "piriform cortex plexiform layer" RELATED [NLXANAT:091003] +synonym: "plexiform layer of piriform cortex" EXACT [NLXANAT:091003] +synonym: "plexiform layer of piriform cortex" RELATED [NLXANAT:091003] +synonym: "pyriform cortex layer 1" EXACT [NLXANAT:091003] +synonym: "pyriform cortex layer 1" RELATED [NLXANAT:091003] +xref: NLXANAT:091003 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +relationship: part_of UBERON:0004725 {source="NIFSTD"} ! piriform cortex + +[Term] +id: UBERON:0014280 +name: piriform cortex layer 2 +def: "Middle of three cytoarchitecturally defined layers of the piriform cortex characterized by a compact layer of cell bodies. It can be divided into a superficial part and a more densely packed deep part" [NLXANAT:091006] +synonym: "layer 2 of piriform cortex" EXACT [NLXANAT:091006] +synonym: "layer 2 of piriform cortex" RELATED [NLXANAT:091006] +synonym: "layer II of piriform cortex" EXACT [NLXANAT:091006] +synonym: "layer II of piriform cortex" RELATED [NLXANAT:091006] +synonym: "piriform cortex layer 2" EXACT [NLXANAT:091006] +synonym: "piriform cortex layer II" EXACT [NLXANAT:091006] +synonym: "piriform cortex layer II" RELATED [NLXANAT:091006] +xref: DHBA:11336 +xref: NLXANAT:091006 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +relationship: part_of UBERON:0004725 {source="NIFSTD"} ! piriform cortex + +[Term] +id: UBERON:0014283 +name: piriform cortex layer 3 +def: "Deepest of 3 cytoarchitecturally defined layers of the piriform cortex characterized by a moderately high density of pyramidal cells and large numbers of basal dendrites descending from pyramidal cells in layer 2." [NLXANAT:091009] +synonym: "layer 3 of piriform cortex" EXACT [NLXANAT:091009] +synonym: "layer 3 of piriform cortex" RELATED [NLXANAT:091009] +synonym: "piriform cortex layer 3" EXACT [NLXANAT:091009] +xref: NLXANAT:091009 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +relationship: part_of UBERON:0004725 {source="NIFSTD"} ! piriform cortex + +[Term] +id: UBERON:0014284 +name: endopiriform nucleus +def: "An elongated nucleus consisting largely of multipolar spiny cells lying deep to the piriform cortex. \nAccording to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, (Ed.), Academic Press, San Diego), it is part of the claustrum." [NLXANAT:091033] +synonym: "endopiriform nucleus" EXACT [NLXANAT:091033] +synonym: "layer 4 of piriform cortex" EXACT [NLXANAT:091033] +synonym: "layer 4 of piriform cortex" RELATED [NLXANAT:091033] +synonym: "layer IV of piriform cortex" EXACT [NLXANAT:091033] +synonym: "layer IV of piriform cortex" RELATED [NLXANAT:091033] +xref: BAMS:EP +xref: DHBA:10371 +xref: EMAPA:35311 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2276 +xref: MBA:942 +xref: NLXANAT:091033 +xref: OldNeuroNames:2276 {source="NLXANAT:091033"} +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0002023 {source="NIFSTD"} ! claustrum of brain + +[Term] +id: UBERON:0014286 +name: dorsal cap of Kooy +synonym: "dorsal cap of kooy" EXACT [NLXANAT:100307] +xref: NLXANAT:100307 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002127 {source="NIFSTD"} ! inferior olivary complex + +[Term] +id: UBERON:0014287 +name: medial accessory olive +def: "Regional part of the inferior olivary complex" [NLXANAT:100309] +synonym: "MAO" EXACT [NLXANAT:100309] +synonym: "medial accessory olive" EXACT [NLXANAT:100309] +xref: BAMS:IOma +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=751 +xref: NLXANAT:100309 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002127 {source="NIFSTD"} ! inferior olivary complex + +[Term] +id: UBERON:0014370 +name: extrastriate cortex +def: "A group of cortical areas related by direct or indirect connectivity to the striate area 17 and functionally involved primarily in vision. They include the parastriate area 18, the peristriate area 19 and adjacent areas in the parietal lobe and temporal lobe (Adapted from BrainInfo and Zilles-1990)." [NLXANAT:200905010] +synonym: "extrastriate areas" EXACT [NLXANAT:200905010] +synonym: "extrastriate areas" RELATED [NLXANAT:200905010] +synonym: "extrastriate cortex" EXACT [NLXANAT:200905010] +synonym: "extrastriate cortical area" RELATED [BTO:0004704] +synonym: "peristriate cortex" NARROW [http://en.wikipedia.org/wiki/Extrastriate_cortex] +xref: BTO:0004704 +xref: DHBA:10270 +xref: Extrastriate:cortex +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1349 +xref: NLXANAT:200905010 +is_a: UBERON:0010009 {source="NIFSTD"} ! aggregate regional part of brain +relationship: part_of UBERON:0000411 {source="WP"} ! visual cortex + +[Term] +id: UBERON:0014371 +name: future telencephalon +def: "Embryonic structure that gives rise to the telencephalon." [ZFA:0000571, ZFA:curator] +comment: paired anteriolateral division of the embryonic prosencephalon plus the lamina terminalis from which the olfactory lobes, cerebral cortex, and subcortical nuclei are derived[MP] +synonym: "presumptive telencephalon" EXACT [ZFA:0000571] +xref: EHDAA2:0004424 +xref: EMAPA:36024 +xref: TAO:0000571 +xref: ZFA:0000571 +is_a: UBERON:0006598 ! presumptive structure +intersection_of: UBERON:0006598 ! presumptive structure +intersection_of: has_potential_to_develop_into UBERON:0001893 ! telencephalon +relationship: has_developmental_contribution_from UBERON:0003850 {evidence="definitional"} ! telencephalon neural crest +relationship: has_potential_to_develop_into UBERON:0001893 ! telencephalon +relationship: part_of UBERON:0006240 ! future forebrain + +[Term] +id: UBERON:0014372 +name: fibroelastic membrane of larynx +def: "A layer of fibrous and elastic fibers, taking the place of the submucosa in the larynx. It is divided by the laryngeal ventricle into two parts: the quadrangular membrane superiorly and the conus elasticus inferiorly." [http://www.medilexicon.com/medicaldictionary.php?t=53910] +synonym: "fibro-elastic membrane of larynx" EXACT [FMA:55239] +synonym: "membrana fibroelastica laryngis" EXACT LATIN [http://www.medilexicon.com/medicaldictionary.php?t=53910] +xref: FMA:55239 +xref: http://www.snomedbrowser.com/Codes/Details/361942003 +is_a: UBERON:0000094 {source="FMA"} ! membrane organ +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: part_of UBERON:0001737 ! larynx + +[Term] +id: UBERON:0014374 +name: embryoid body +def: "Embryoid bodies (EBs) are three-dimensional aggregates of pluripotent stem cells." [EFO:0004988, https://github.com/obophenotype/uberon/issues/245] +subset: efo_slim +synonym: "embryonic body" RELATED [http://en.wikipedia.org/wiki/Embryoid_body] +xref: BTO:0001718 +xref: EFO:0004988 +xref: Embryoid:body +is_a: UBERON:0002050 {source="EFO"} ! embryonic structure + +[Term] +id: UBERON:0014375 +name: intrinsic muscle of manus +def: "Any of the intrinsic muscles of the manus (hand)" [http://medical-dictionary.thefreedictionary.com/intrinsic+muscles] +synonym: "intrinsic hand muscle" EXACT [] +synonym: "intrinsic muscle of hand" EXACT [FMA:42380] +xref: FMA:42380 +xref: http://www.snomedbrowser.com/Codes/Details/244997002 +is_a: UBERON:0001500 ! muscle of manus +is_a: UBERON:0035112 ! intrinsic muscle +intersection_of: UBERON:0035112 ! intrinsic muscle +intersection_of: part_of UBERON:0002398 ! manus +relationship: fma_set_term FMA:42372 + +[Term] +id: UBERON:0014376 +name: thenar muscle +def: "Any of the muscles of the thenar eminence, a raised fleshy area on the palm of the hand near the base of the thumb." [http://medical-dictionary.thefreedictionary.com/Thenar+muscle] +subset: pheno_slim +synonym: "thenar compartment" RELATED [http://en.wikipedia.org/wiki/Thenar_eminence] +synonym: "thenar eminence" RELATED [http://en.wikipedia.org/wiki/Thenar_eminence] +synonym: "thenar muscle" RELATED [http://en.wikipedia.org/wiki/Thenar_eminence] +synonym: "thenar muscles" RELATED [http://en.wikipedia.org/wiki/Thenar_eminence] +xref: FMA:64916 +xref: http://www.snomedbrowser.com/Codes/Details/181640000 +xref: Thenar:eminence +is_a: UBERON:0014375 {source="FMA"} ! intrinsic muscle of manus + +[Term] +id: UBERON:0014377 +name: hypothenar muscle +def: "Any of three muscles of the palm that control the motion of the little finger." [http://en.wikipedia.org/wiki/Hypothenar_eminence, https://github.com/obophenotype/uberon/issues/1277] +comment: The three muscles are: Abductor digiti minimi Flexor digiti minimi Opponens digiti minimi +synonym: "hypothenar" RELATED [http://en.wikipedia.org/wiki/Hypothenar_eminence] +synonym: "hypothenar muscle" RELATED [http://en.wikipedia.org/wiki/Hypothenar_eminence] +synonym: "hypothenar muscles" RELATED [http://en.wikipedia.org/wiki/Hypothenar_eminence] +xref: FMA:64917 +xref: http://www.snomedbrowser.com/Codes/Details/181643003 +xref: Hypothenar:eminence +is_a: UBERON:0014375 {source="FMA"} ! intrinsic muscle of manus + +[Term] +id: UBERON:0014378 +name: intrinsic muscle of pes +def: "Any of the intrinsic muscles of the pes (foot)" [http://medical-dictionary.thefreedictionary.com/intrinsic+muscles] +synonym: "intrinsic muscle of foot" EXACT [FMA:65020] +xref: FMA:65020 +is_a: UBERON:0001498 ! muscle of pes +is_a: UBERON:0035112 ! intrinsic muscle +intersection_of: UBERON:0035112 ! intrinsic muscle +intersection_of: part_of UBERON:0002387 ! pes + +[Term] +id: UBERON:0014379 +name: adductor hallucis muscle +def: "The Adductor hallucis (Adductor obliquus hallucis) arises by two headsboblique and transverse and is responsible for adducting the big toe. It is innervated by the lateral plantar nerve. It evolved from the contrahens I muscle as Man's ancestors' thumbs and big toes became opposable." [http://en.wikipedia.org/wiki/Adductor_hallucis_muscle] +synonym: "adductor hallucis" EXACT [FMA:37454] +synonym: "adductor hallucis" RELATED [http://en.wikipedia.org/wiki/Adductor_hallucis_muscle] +synonym: "adductor transversus hallucis" RELATED [http://en.wikipedia.org/wiki/Adductor_hallucis_muscle] +synonym: "contrahens I muscle" RELATED [http://en.wikipedia.org/wiki/Adductor_hallucis_muscle] +xref: FMA:37454 +xref: http://en.wikipedia.org/wiki/Adductor_hallucis_muscle +xref: http://www.snomedbrowser.com/Codes/Details/181727000 +is_a: UBERON:0014378 {source="FMA"} ! intrinsic muscle of pes + +[Term] +id: UBERON:0014380 +name: flexor digitorum brevis muscle +def: "The flexor digitorum brevis lies in the middle of the sole of the foot, immediately above the central part of the plantar aponeurosis, with which it is firmly united. Its deep surface is separated from the lateral plantar vessels and nerves by a thin layer of fascia." [http://en.wikipedia.org/wiki/Flexor_digitorum_brevis_muscle] +synonym: "flexor digitorum brevis" EXACT [FMA:37450] +synonym: "flexor digitorum brevis" RELATED [http://en.wikipedia.org/wiki/Flexor_digitorum_brevis_muscle] +synonym: "flexor digitorum brevis of foot" EXACT [FMA:37450] +synonym: "musculus flexor digitorum brevis" EXACT [FMA:TA] +xref: EMAPA:36247 +xref: FMA:37450 +xref: http://en.wikipedia.org/wiki/Flexor_digitorum_brevis_muscle +xref: http://www.snomedbrowser.com/Codes/Details/181724007 +xref: http://www.snomedbrowser.com/Codes/Details/79490000 +is_a: UBERON:0014378 {source="FMA"} ! intrinsic muscle of pes +relationship: has_muscle_insertion UBERON:0001449 ! phalanx of pes +relationship: has_muscle_origin UBERON:0001450 ! calcaneus + +[Term] +id: UBERON:0014381 +name: whorl of hair +def: "A patch of hair growing in the opposite direction of the rest of the hair." [http://en.wikipedia.org/wiki/Hair_whorl] +comment: Hair whorls occur in most hairy animals, on the body as well as on the head. Hair whorls, also known as crowns, swirls, trichoglyphs, or cowlicks, can be either clockwise or counterclockwise in direction of growth.[WP] +subset: pheno_slim +synonym: "hair whorl" BROAD [] +synonym: "whorl" BROAD [] +xref: Hair:whorl +is_a: UBERON:0010164 ! collection of hairs +relationship: fma_set_term FMA:76564 + +[Term] +id: UBERON:0014382 +name: collection of hairs on head or neck +def: "A collection of hairs that is part of a craniocervical region." [OBOL:automatic] +is_a: UBERON:0010164 ! collection of hairs +intersection_of: UBERON:0010164 ! collection of hairs +intersection_of: part_of UBERON:0007811 ! craniocervical region +relationship: part_of UBERON:0007811 ! craniocervical region + +[Term] +id: UBERON:0014385 +name: aryepiglottic fold +def: "The entrance of the larynx is a triangular opening, narrow in front, wide behind, and sloping obliquely downward and backward. It is bounded, in front, by the epiglottis; behind, by the apices of the arytenoid cartilages, the corniculate cartilages, and the interarytenoid notch; and on either side, by a fold of mucous membrane, enclosing ligamentous and muscular fibers, stretched between the side of the epiglottis and the apex of the arytenoid cartilage; this is the aryepiglottic fold, on the posterior part of the margin of which the cuneiform cartilage forms a more or less distinct whitish prominence, the cuneiform tubercle. These folds form the upper borders of the quadrangular membrane." [http://en.wikipedia.org/wiki/Aryepiglottic_fold] +subset: pheno_slim +synonym: "ary-epiglottic fold" EXACT [FMA:55448] +synonym: "aryepiglottic folds" RELATED [http://en.wikipedia.org/wiki/Aryepiglottic_fold] +synonym: "aryepiglottic sphincter" RELATED [http://en.wikipedia.org/wiki/Aryepiglottic_fold] +synonym: "aryepiglottis" RELATED [http://en.wikipedia.org/wiki/Aryepiglottic_fold] +synonym: "plica aryepiglottica" RELATED LATIN [http://en.wikipedia.org/wiki/Aryepiglottic_fold] +xref: Aryepiglottic:fold +xref: FMA:55448 +xref: http://linkedlifedata.com/resource/umls/id/C1510944 +xref: http://www.snomedbrowser.com/Codes/Details/245503009 +xref: NCIT:C32147 +xref: UMLS:C1510944 {source="ncithesaurus:Aryteno-epiglottic_Fold"} +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0001737 ! larynx +relationship: part_of UBERON:0001737 ! larynx + +[Term] +id: UBERON:0014386 +name: vertebral endplate +def: "Either of the the top and bottom portions of the vertebral bodies that interface with the vertebral discs. It is composed of a layer of thickened cancellous bone." [HPO:curators, http://en.wikipedia.org/wiki/Endplates] +subset: pheno_slim +synonym: "endplate" BROAD [] +xref: BTO:0005552 +xref: FMA:293500 +xref: http://en.wikipedia.org/wiki/Endplates +is_a: UBERON:0005913 ! zone of bone organ +relationship: composed_primarily_of UBERON:0002483 ! trabecular bone tissue +relationship: part_of UBERON:0001075 ! bony vertebral centrum + +[Term] +id: UBERON:0014387 +name: mesenchyme derived from neural crest +def: "Mesenchyme that develops_from the neural crest[Automatically generated definition]." [https://github.com/obophenotype/uberon/issues/248, OBOL:automatic] +synonym: "mesenchyme from neural crest" EXACT [] +synonym: "neural crest derived mesenchyme" EXACT [] +synonym: "neural crest mesenchyme" EXACT [] +xref: EMAPA:32735 +xref: FMA:293883 +is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: develops_from UBERON:0002342 ! neural crest + +[Term] +id: UBERON:0014388 +name: kidney collecting duct epithelium +def: "The simple cuboidal epithelium lining the lumen of kidney collecting ducts." [MGI:anna, MP:0011843] +subset: pheno_slim +synonym: "collecting duct of renal tubule epithelium" EXACT [] +synonym: "epithelium of collecting duct of renal tubule" EXACT [] +synonym: "epithelium of renal collecting tubule" EXACT [] +xref: EMAPA:37885 {source="MA:th"} +is_a: UBERON:0000484 ! simple cuboidal epithelium +is_a: UBERON:0004211 ! nephron epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001232 ! collecting duct of renal tubule +relationship: contributes_to_morphology_of UBERON:0001232 ! collecting duct of renal tubule +relationship: part_of UBERON:0001232 ! collecting duct of renal tubule + +[Term] +id: UBERON:0014389 +name: gustatory papilla of tongue +def: "A papilla that contain taste buds, including the fungiform, foliate, and circumvallate papillae." [MGI:smb, MP:0006256] +synonym: "gustatory papilla" EXACT [] +synonym: "gustatory papillae" RELATED PLURAL [] +synonym: "taste papilla" EXACT [] +synonym: "taste papillae" RELATED PLURAL [] +xref: FMA:54822 +is_a: UBERON:0001726 ! papilla of tongue +intersection_of: UBERON:0001726 ! papilla of tongue +intersection_of: has_part UBERON:0001727 ! taste bud +relationship: has_part UBERON:0001727 ! taste bud + +[Term] +id: UBERON:0014390 +name: muscle layer of ileum +def: "A muscular coat that is part of a ileum." [OBOL:automatic] +synonym: "ileal smooth muscle" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "muscularis externa of ileum" EXACT [FMA:14958] +synonym: "muscularis propria of ileum" RELATED [https://orcid.org/0000-0002-6601-2165] +synonym: "smooth muscle of ileum" RELATED [https://orcid.org/0000-0002-6601-2165] +xref: BTO:0005574 +xref: FMA:14958 +is_a: UBERON:0011201 ! muscle layer of small intestine +intersection_of: UBERON:0006660 ! muscular coat +intersection_of: part_of UBERON:0002116 ! ileum +relationship: part_of UBERON:0002116 ! ileum + +[Term] +id: UBERON:0014391 +name: palmar/plantar sweat gland +def: "A sweat gland that is part of the skin of the palmar part of the manus or plantar part of the pes" [http://orcid.org/0000-0002-6601-2165] +synonym: "palm sweat gland" NARROW [] +synonym: "palm/sole sweat gland" RELATED [] +synonym: "palmar eccrine sweat gland" NARROW [] +synonym: "palmar/plantar eccrine sweat gland" RELATED [] +synonym: "sweat gland of palmar part of manus" NARROW [] +synonym: "sweat gland of palmar/plant part of autopod" RELATED [] +is_a: UBERON:0000423 ! eccrine sweat gland +intersection_of: UBERON:0001820 ! sweat gland +intersection_of: part_of UBERON:0008837 ! palmar/plantar part of autopod +relationship: part_of UBERON:0008837 ! palmar/plantar part of autopod + +[Term] +id: UBERON:0014392 +name: sweat of palm +def: "Sweat that is produced by the glands on the palmar and plantar surfaces." [http://orcid.org/0000-0002-6601-2165] +synonym: "palm sweat" EXACT [FMA:63084] +synonym: "palmar sweat" EXACT [FMA:63084] +xref: FMA:63084 +is_a: UBERON:0001089 ! sweat +intersection_of: UBERON:0001089 ! sweat +intersection_of: produced_by UBERON:0014391 ! palmar/plantar sweat gland +relationship: produced_by UBERON:0014391 ! palmar/plantar sweat gland + +[Term] +id: UBERON:0014393 +name: sweat of axilla +def: "Sweat that is produced by the glands of the axilla." [http://orcid.org/0000-0002-6601-2165] +synonym: "axillary sweat" EXACT [FMA:63085] +xref: FMA:63085 +is_a: UBERON:0001089 ! sweat +intersection_of: UBERON:0001089 ! sweat +intersection_of: produced_by UBERON:0018232 ! axillary sweat gland +relationship: produced_by UBERON:0018232 ! axillary sweat gland + +[Term] +id: UBERON:0014394 +name: uterine fat pad +def: "Encapsulated adipose tissue associated with the uterus" [MP:0008900] +subset: pheno_slim +synonym: "peri-uterine fat pad" RELATED [] +synonym: "periuterine fat pad" RELATED [] +synonym: "uterine fat depot" EXACT [] +xref: EMAPA:37979 {source="MA:th"} +is_a: UBERON:0003916 ! fat pad +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0003916 ! fat pad +intersection_of: part_of UBERON:0000995 ! uterus +relationship: part_of UBERON:0000995 ! uterus + +[Term] +id: UBERON:0014395 +name: proximal mesopodial bone +def: "A proximal mesopodial endochondral element that is composed primarily of a bone tissue." [OBOL:automatic] +is_a: UBERON:0003656 ! mesopodium bone +is_a: UBERON:0017750 ! proximal mesopodial endochondral element +intersection_of: UBERON:0017750 ! proximal mesopodial endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0017751 ! proximal mesopodial cartilage element + +[Term] +id: UBERON:0014396 +name: interscapular fat pad +def: "Encapsulated adipose tissue located between the scapulae." [MGI:rbabiuk, MGI:smb] +subset: pheno_slim +synonym: "interscapular fat depot" EXACT [] +is_a: UBERON:0003579 ! shoulder connective tissue +is_a: UBERON:0003916 ! fat pad + +[Term] +id: UBERON:0014397 +name: lateral process of malleus +def: "A short projection from the base of the manubrium of the malleus, attached firmly to the drum membrane." [http://www.medilexicon.com/medicaldictionary.php?t=72288] +synonym: "malleus process brevis" EXACT [MA:0002994] +synonym: "process brevis" RELATED [http://medical-dictionary.thefreedictionary.com/processus+brevis] +synonym: "processus lateralis (malleus)" EXACT [FMA:52770] +synonym: "processus lateralis mallei" EXACT LATIN [] +synonym: "processus lateralis malleus" EXACT LATIN [] +synonym: "short process of malleus" EXACT [] +synonym: "tuberculum mallei" EXACT LATIN [http://medical-dictionary.thefreedictionary.com/processus+brevis] +xref: FMA:52770 +xref: http://www.snomedbrowser.com/Codes/Details/368921009 +xref: MA:0002994 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001689 {source="FMA"} ! malleus bone + +[Term] +id: UBERON:0014398 +name: respiratory muscle +def: "Muscle that is part of the respiratory system." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +is_a: UBERON:0003831 ! respiratory system muscle +relationship: composed_primarily_of UBERON:0001134 ! skeletal muscle tissue + +[Term] +id: UBERON:0014399 +name: sinusoidal space +def: "A anatomical space that is enclosed by a sinusoid." [OBOL:automatic] +synonym: "lumen of sinusoid" EXACT [FMA:63133] +synonym: "sinusoid lumen" EXACT [FMA:63133] +xref: FMA:63133 +is_a: UBERON:0010161 ! lumen of blood vessel +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0003909 ! sinusoid +relationship: luminal_space_of UBERON:0003909 ! sinusoid +relationship: part_of UBERON:0003909 ! sinusoid + +[Term] +id: UBERON:0014400 +name: hepatic sinusoidal space +def: "A sinusoidal space that is part of a hepatic sinusoid." [OBOL:automatic] +synonym: "lumen of hepatic sinusoid" EXACT [FMA:262090] +xref: FMA:262090 +is_a: UBERON:0014399 ! sinusoidal space +intersection_of: UBERON:0014399 ! sinusoidal space +intersection_of: part_of UBERON:0001281 ! hepatic sinusoid +relationship: part_of UBERON:0001281 ! hepatic sinusoid + +[Term] +id: UBERON:0014401 +name: renal venous blood vessel +def: "Any member of the network of tubes that return blood from the renal tissues to the systemic circulation." [MGI:csmith] +subset: pheno_slim +synonym: "kidney venous blood vessel" EXACT [MA:0002591] +synonym: "kidney venous system" RELATED [EMAPA:31450] +synonym: "venous blood vessel of kidney" EXACT [] +xref: EMAPA:31450 +xref: MA:0002591 +is_a: UBERON:0003517 ! kidney blood vessel +is_a: UBERON:0003920 ! venous blood vessel +intersection_of: UBERON:0003920 ! venous blood vessel +intersection_of: part_of UBERON:0002113 ! kidney + +[Term] +id: UBERON:0014402 +name: sex-specific anatomical structure +def: "A part of the body present only in a specific gender." [AEO:0000174, AEO:JB] +synonym: "gender-specific" EXACT [] +synonym: "gender-specific anatomical structure" EXACT [AEO:0000174] +synonym: "sex-specific" EXACT [] +xref: AEO:0000174 +xref: WBbt:0005752 +is_a: UBERON:0000061 ! anatomical structure + +[Term] +id: UBERON:0014403 +name: male anatomical structure +def: "A part of the body present only in males." [AEO:0000175, AEO:JB] +synonym: "male-specific" RELATED [WBbt:0005757] +synonym: "male-specific structure" EXACT [] +xref: AEO:0000175 +xref: WBbt:0005757 +is_a: UBERON:0014402 ! sex-specific anatomical structure +intersection_of: UBERON:0014402 ! sex-specific anatomical structure +intersection_of: part_of UBERON:0003101 ! male organism +relationship: part_of UBERON:0003101 ! male organism + +[Term] +id: UBERON:0014404 +name: female anatomical structure +def: "A part of the body present only in females." [AEO:0000176, AEO:JB] +xref: AEO:0000176 +is_a: UBERON:0014402 ! sex-specific anatomical structure +intersection_of: UBERON:0014402 ! sex-specific anatomical structure +intersection_of: part_of UBERON:0003100 ! female organism +relationship: part_of UBERON:0003100 ! female organism + +[Term] +id: UBERON:0014405 +name: nymph stage +def: "A larval stage of that is the immature stage of some invertebrates that undergoe gradual metamorphosis (hemimetabolism) before reaching its adult stage." [UBERON:cjm] +synonym: "nymph" RELATED [BTO:0000954] +xref: BTO:0000954 +xref: Nymph:(biology) +is_a: UBERON:0000069 ! larval stage + +[Term] +id: UBERON:0014406 +name: nauplius stage +def: "The free-swimming first stage of the larva of certain crustaceans, having an unsegmented body with three pairs of appendages and a single median eye. The eye is known for that reason as the 'naupliar eye', and is often absent in later developmental stages, although it is retained into the adult form in some groups, such as the Notostraca." [http://en.wikipedia.org/wiki/Crustacean_larvae#Nauplius] +synonym: "nauplius" RELATED [BTO:0000915] +xref: BTO:0000915 +is_a: UBERON:0000105 ! life cycle stage +relationship: part_of UBERON:0018378 ! crustacean larval stage + +[Term] +id: UBERON:0014409 +name: metacromion +def: "A process projecting backward and downward from the acromion of the scapula of some mammals." [http://www.thefreedictionary.com/Metacromion] +synonym: "metacromion of scapula" EXACT [] +synonym: "metacromion process" EXACT [] +synonym: "scapular metacromion" EXACT [] +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0006849 ! scapula + +[Term] +id: UBERON:0014410 +name: fibularis quartus +synonym: "fibularis quartus muscle" EXACT [] +synonym: "peroneus digiti IV" RELATED [EMAPA:36260] +synonym: "peroneus digiti quarti" EXACT [EMAPA:36260] +synonym: "peroneus quartus" EXACT [] +synonym: "peroneus quartus muscle" EXACT [] +xref: EMAPA:36260 +is_a: UBERON:0009132 ! peroneus +relationship: has_muscle_insertion UBERON:0001450 {source="http://www.ncbi.nlm.nih.gov/pubmed/14653594"} ! calcaneus +relationship: has_muscle_insertion UBERON:0003653 ! metatarsal bone of digit 4 +relationship: has_muscle_origin UBERON:0010526 {notes="may also originate from the longus", source="http://www.ncbi.nlm.nih.gov/pubmed/14653594"} ! fibularis brevis + +[Term] +id: UBERON:0014411 +name: greater sciatic notch +def: "On the dorsal border of the wing of the ilium , at it's junction with the shaft is a cut away. This forms the Greater sciatic notch. The sciatic nerve runs over the notch in passage to the hindlimb." [MURDOCH:865] +subset: pheno_slim +synonym: "greater sacrosciatic notch" EXACT [] +synonym: "incisura ischiadica major" EXACT LATIN [http://en.wikipedia.org/wiki/Greater_sciatic_notch] +xref: FMA:16902 +xref: http://en.wikipedia.org/wiki/Greater_sciatic_notch +xref: http://www.snomedbrowser.com/Codes/Details/292728005 +is_a: UBERON:0014430 ! sciatic notch +relationship: conduit_for UBERON:0008529 ! piriformis muscle + +[Term] +id: UBERON:0014430 +name: sciatic notch +def: "Either of two notches on the dorsal border of the hip bone on each side that when closed off by ligaments form the corresponding sciatic foramina." [http://www.merriam-webster.com/medical/sciatic+notch] +xref: http://www.snomedbrowser.com/Codes/Details/360956007 +xref: Sciatic:notch +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005744 ! bone foramen +relationship: part_of UBERON:0001274 ! ischium + +[Term] +id: UBERON:0014436 +name: lesser sciatic notch +def: "Below the ischial spine is a smaller notch, the lesser sciatic notch; it is smooth, coated in the recent state with cartilage, the surface of which presents two or three ridges corresponding to the subdivisions of the tendon of the Obturator internus, which winds over it. It is converted into a foramen, the lesser sciatic foramen, by the sacrotuberous and sacrospinous ligaments, and transmits the tendon of the Obturator internus, the nerve which supplies that muscle, and the internal pudendal vessels and nerve." [http://en.wikipedia.org/wiki/Lesser_sciatic_notch] +synonym: "incisura ischiadica minor" EXACT LATIN [http://en.wikipedia.org/wiki/Lesser_sciatic_notch] +xref: FMA:16911 +xref: http://en.wikipedia.org/wiki/Lesser_sciatic_notch +xref: http://www.snomedbrowser.com/Codes/Details/292830001 +is_a: UBERON:0014430 ! sciatic notch +relationship: conduit_for UBERON:0005465 ! obturator nerve +relationship: conduit_for UBERON:0011048 ! obturator internus + +[Term] +id: UBERON:0014437 +name: iliac crest +def: "Is part of the pelvis on the edge of the wing of the ilium. Round in shape, dorsal to the pubis and ischium. Acts as structrure that muscles can attach too." [MURDOCH:931] +subset: pheno_slim +xref: EMAPA:37602 {source="MA:th"} +xref: FMA:16914 +xref: http://www.snomedbrowser.com/Codes/Details/182034009 +xref: MA:0003053 +xref: NCIT:C103818 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0001273 ! ilium + +[Term] +id: UBERON:0014438 +name: superior pubic ramus +def: "The superior pubic ramus is a part of the pubic bone which forms a portion of the obturator foramen. It extends from the body to the median plane where it articulates with its fellow of the opposite side. It is conveniently described in two portions, viz. , a medial flattened part and a narrow lateral prismoid portion." [http://en.wikipedia.org/wiki/Superior_pubic_ramus] +synonym: "superior rami of the pubes" RELATED [http://en.wikipedia.org/wiki/Superior_pubic_ramus] +synonym: "superior ramus of pubis" EXACT [FMA:16988] +synonym: "superior ramus of the pubis" RELATED [http://en.wikipedia.org/wiki/Superior_pubic_ramus] +xref: FMA:16988 +xref: http://en.wikipedia.org/wiki/Superior_pubic_ramus +xref: http://www.snomedbrowser.com/Codes/Details/182037002 +is_a: UBERON:0014444 ! pubic ramus + +[Term] +id: UBERON:0014439 +name: inferior pubic ramus +def: "The inferior pubic ramus is thin and flattened. It passes lateralward and downward from the medial end of the superior ramus; it becomes narrower as it descends and joins with the inferior ramus of the ischium below the obturator foramen." [http://en.wikipedia.org/wiki/Inferior_pubic_ramus] +subset: pheno_slim +synonym: "inferior rami of the pubes" RELATED [http://en.wikipedia.org/wiki/Inferior_pubic_ramus] +synonym: "inferior ramus of pubis" EXACT [FMA:16989] +synonym: "inferior ramus of the pubis" RELATED [http://en.wikipedia.org/wiki/Inferior_pubic_ramus] +xref: FMA:16989 +xref: http://en.wikipedia.org/wiki/Inferior_pubic_ramus +xref: http://www.snomedbrowser.com/Codes/Details/182038007 +is_a: UBERON:0014444 ! pubic ramus + +[Term] +id: UBERON:0014440 +name: ischiopubic ramus +def: "The ischiopubic ramus is a compound structure consisting of the following two structures: from the pubis, the inferior pubic ramus from the ischium, the inferior ramus of the ischium It serves as part of the origin for the Obturator internus muscle. It also marks a vertex of the anal triangle and the urogenital triangle. The fascia of Colles is attached to its margin." [http://en.wikipedia.org/wiki/Ischiopubic_ramus] +synonym: "conjoint ramus" EXACT [FMA:43533] +synonym: "ischiopubic rami" RELATED [http://en.wikipedia.org/wiki/Ischiopubic_ramus] +synonym: "rami of the pubis and ischium" RELATED [http://en.wikipedia.org/wiki/Ischiopubic_ramus] +xref: FMA:43533 +xref: Ischiopubic:ramus +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +relationship: has_part UBERON:0014439 ! inferior pubic ramus +relationship: has_part UBERON:0014443 ! inferior ischial ramus +relationship: part_of UBERON:0001272 {source="FMA"} ! innominate bone + +[Term] +id: UBERON:0014441 +name: ischial ramus +synonym: "ramus of ischium" EXACT [FMA:17007] +synonym: "ramus ossis ischii" EXACT [FMA:17007] +synonym: "ramusi ossis ischii" EXACT [FMA:TA] +xref: FMA:17007 +xref: http://www.snomedbrowser.com/Codes/Details/182043000 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0001274 ! ischium + +[Term] +id: UBERON:0014442 +name: superior ischial ramus +def: "The superior ramus of the ischium (descending ramus) projects downward and backward from the body and presents for examination three surfaces: external, internal, and posterior. The external surface is quadrilateral in shape. It is bounded above by a groove which lodges the tendon of the Obturator externus; below, it is continuous with the inferior ramus; in front it is limited by the posterior margin of the obturator foramen; behind, a prominent margin separates it from the posterior surface. In front of this margin the surface gives origin to the Quadratus femoris, and anterior to this to some of the fibers of origin of the Obturator externus; the lower part of the surface gives origin to part of the Adductor magnus. The internal surface forms part of the bony wall of the lesser pelvis. In front it is limited by the posterior margin of the obturator foramen. Below, it is bounded by a sharp ridge which gives attachment to a falciform prolongation of the sacrotuberous ligament, and, more anteriorly, gives origin to the Transversus perinC&i and Ischiocavernosus. Posteriorly the ramus forms a large swelling, the tuberosity of the ischium" [http://en.wikipedia.org/wiki/Superior_ramus_of_the_ischium] +synonym: "superior ramus of ischium" RELATED [] +xref: FMA:304318 +xref: http://en.wikipedia.org/wiki/Superior_ramus_of_the_ischium +xref: http://www.snomedbrowser.com/Codes/Details/292625002 +is_a: UBERON:0014441 ! ischial ramus + +[Term] +id: UBERON:0014443 +name: inferior ischial ramus +def: "The Inferior Ramus of the ischium (ascending ramus) is the thin, flattened part of the ischium, which ascends from the superior ramus, and joins the inferior ramus of the pubisbthe junction being indicated in the adult by a raised line. The outer surface is uneven for the origin of the obturator externus and some of the fibers of the adductor magnus; its inner surface forms part of the anterior wall of the pelvis. Its medial border is thick, rough, slightly everted, forms part of the outlet of the pelvis, and presents two ridges and an intervening space. The ridges are continuous with similar ones on the inferior ramus of the pubis: to the outer is attached the deep layer of the superficial perineal fascia (fascia of Colles), and to the inner the inferior fascia of the urogenital diaphragm. If these two ridges be traced downward, they will be found to join with each other just behind the point of origin of the transversus perinC&i; here the two layers of fascia are continuous behind the posterior border of the muscle. To the intervening space, just in front of the point of junction of the ridges, the transversus perinC&i is attached, and in front of this a portion of the crus penis vel clitoridis and the ischiocavernosus. Its lateral border is thin and sharp, and forms part of the medial margin of the obturator foramen." [http://en.wikipedia.org/wiki/Inferior_ramus_of_the_ischium] +synonym: "inferior rami of the pubis" RELATED [http://en.wikipedia.org/wiki/Inferior_ramus_of_the_ischium] +synonym: "inferior ramus of ischium" RELATED [] +xref: http://en.wikipedia.org/wiki/Inferior_ramus_of_the_ischium +xref: http://www.snomedbrowser.com/Codes/Details/361324004 +is_a: UBERON:0014441 ! ischial ramus + +[Term] +id: UBERON:0014444 +name: pubic ramus +subset: pheno_slim +synonym: "ramus of pubis" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/182026003 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +union_of: UBERON:0014438 ! superior pubic ramus +union_of: UBERON:0014439 ! inferior pubic ramus +relationship: part_of UBERON:0001275 ! pubis + +[Term] +id: UBERON:0014445 +name: acetabular fossa +def: "The acetabular fossa is the roughened depression in the centre of the acetabulum, surrounded by the lunate acetabular surface and the acetabular notch. The acetabular fossa provides an insertion point for the teres ligaments that secure the femoral head." [MURDOCH:100] +comment: It is occupied by the ligament of head of femur[WP] +subset: pheno_slim +synonym: "fossa acetabularis" EXACT LATIN [http://en.wikipedia.org/wiki/Acetabular_fossa] +synonym: "fossa acetabularis (acetabuli)" EXACT [FMA:17269] +synonym: "fossa acetabuli" EXACT LATIN [http://en.wikipedia.org/wiki/Acetabular_fossa] +xref: Acetabular:fossa +xref: FMA:17269 +xref: http://www.snomedbrowser.com/Codes/Details/289666003 +is_a: UBERON:0004704 ! bone fossa +relationship: continuous_with UBERON:0014446 ! acetabular notch +relationship: part_of UBERON:0001272 ! innominate bone + +[Term] +id: UBERON:0014446 +name: acetabular notch +def: "The acetabulum presents below a deep notch, the acetabular notch, which is continuous with a circular non-articular depression, the acetabular fossa, at the bottom of the cavity: this depression is perforated by numerous apertures, and lodges a mass of fat. The notch is converted into a foramen by the transverse ligament; through the foramen nutrient vessels and nerves enter the joint; the margins of the notch serve for the attachment of the ligament of the head of the femur." [http://en.wikipedia.org/wiki/Acetabular_notch] +xref: Acetabular:notch +xref: FMA:16944 +xref: http://www.snomedbrowser.com/Codes/Details/289767000 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005744 ! bone foramen +relationship: conduit_for UBERON:0018411 ! ligament of hip joint +relationship: part_of UBERON:0001272 ! innominate bone + +[Term] +id: UBERON:0014447 +name: feathered facial disc +def: "A collection of feathers arranged in a concave pattern surrounding the eyes in some birds, particularly owls." [http://en.wikipedia.org/wiki/Facial_disc] +synonym: "facial disk" EXACT [] +synonym: "facial diss" EXACT [] +is_a: UBERON:0011810 ! collection of feathers +relationship: part_of UBERON:0001456 ! face +relationship: present_in_taxon NCBITaxon:30458 + +[Term] +id: UBERON:0014448 +name: feathered ear tuft +def: "A collection of feathers found on the heads of some owls." [http://orcid.org/0000-0002-6601-2165] +synonym: "ear horn" RELATED [] +synonym: "ear tuft" EXACT [] +is_a: UBERON:0011810 ! collection of feathers +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0014450 +name: pretectal nucleus +alt_id: UBERON:0002994 +def: "A neural nucleus of the pretectal area (between dorsal thalamus and optic tectum) that receives afferents primarily from the retina and the optic tectum and are involved in modulating motor behavior in response to visual input." [https://github.com/obophenotype/uberon/issues/361, ISBN:0471888893] +subset: pheno_slim +synonym: "nucleus area pretectalis" RELATED LATIN [NeuroNames:468] +synonym: "nucleus of pretectal area" EXACT [FMA:72401] +synonym: "nucleus of the pretectal area" RELATED [NeuroNames:468] +synonym: "pretectal area nucleus" EXACT [FMA:72401] +synonym: "pretectal nucleus" EXACT [] +xref: BAMS:PTA +xref: BIRNLEX:864 +xref: DHBA:12182 +xref: EMAPA:37919 {source="MA:th"} +xref: FMA:72401 +xref: HBA:9083 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=468 {source="BIRNLEX:864"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=468 +xref: http://linkedlifedata.com/resource/umls/id/C0175358 +xref: http://www.snomedbrowser.com/Codes/Details/416164009 +xref: UMLS:C0175358 {source="BIRNLEX:864"} +is_a: UBERON:0002308 ! nucleus of brain +intersection_of: UBERON:0002308 ! nucleus of brain +intersection_of: part_of UBERON:0001944 ! pretectal region +property_value: dc-contributor https://github.com/cmungall +relationship: part_of UBERON:0001944 ! pretectal region +relationship: present_in_taxon NCBITaxon:7761 +relationship: present_in_taxon NCBITaxon:9255 + +[Term] +id: UBERON:0014451 +name: tongue taste bud +def: "A taste bud that is located on the tongue, situated on a gustatory papilla." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "gustatory papilla taste bud" EXACT [] +synonym: "gustatory papillae taste bud" EXACT [MP:0006260] +is_a: UBERON:0001727 ! taste bud +is_a: UBERON:0013765 ! digestive system element +intersection_of: UBERON:0001727 ! taste bud +intersection_of: part_of UBERON:0001723 ! tongue +relationship: part_of UBERON:0014389 ! gustatory papilla of tongue + +[Term] +id: UBERON:0014452 +name: gustatory epithelium of tongue +def: "A gustatory epithelium that is part of a tongue." [OBOL:automatic] +synonym: "lingual gustatory epithelium" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: BIRNLEX:4099 +xref: http://linkedlifedata.com/resource/umls/id/C1179150 +xref: UMLS:C1179150 {source="BIRNLEX:4099"} +is_a: UBERON:0002926 ! gustatory epithelium +is_a: UBERON:0003357 ! epithelium of tongue +intersection_of: UBERON:0002926 ! gustatory epithelium +intersection_of: part_of UBERON:0001723 ! tongue + +[Term] +id: UBERON:0014453 +name: gustatory epithelium of palate +def: "A gustatory epithelium that is part of a roof of mouth." [OBOL:automatic] +synonym: "palatal gustatory epithelium" EXACT [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0002424 ! oral epithelium +is_a: UBERON:0002926 ! gustatory epithelium +intersection_of: UBERON:0002926 ! gustatory epithelium +intersection_of: part_of UBERON:0007375 ! roof of mouth +relationship: part_of UBERON:0007375 ! roof of mouth + +[Term] +id: UBERON:0014454 +name: visceral abdominal adipose tissue +def: "Subcutaneous adipose tissue that is located in the peritoneal cavity." [CALOHA:paula, http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/259, MGI:csmith] +synonym: "abdominal fat" RELATED [BTO:0004041] +synonym: "intra-abdominal adipose tissue" RELATED [] +synonym: "intra-abdominal fat" RELATED [BTO:0004041] +synonym: "organ fat" RELATED [BTO:0004041] +synonym: "visceral adipose tissue" RELATED [BTO:0004041] +synonym: "visceral fat" RELATED [BTO:0004041] +xref: BTO:0004041 +xref: CALOHA:TS-2405 +is_a: UBERON:0007808 ! adipose tissue of abdominal region +intersection_of: UBERON:0001013 ! adipose tissue +intersection_of: bounding_layer_of UBERON:0002075 ! viscus +intersection_of: located_in UBERON:0001179 ! peritoneal cavity +intersection_of: part_of UBERON:0000916 ! abdomen +relationship: bounding_layer_of UBERON:0002075 ! viscus +property_value: dc-contributor https://github.com/cindyJax +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/paulacalipho +relationship: located_in UBERON:0001179 ! peritoneal cavity +relationship: part_of UBERON:0002075 ! viscus + +[Term] +id: UBERON:0014455 +name: subcutaneous abdominal adipose tissue +def: "Subcutaneous adipose tissue that is located in the abdominal region." [CALOHA:paula, http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/259, MGI:csmith] +synonym: "abdominal subcutaneous adipose tissue" EXACT [] +synonym: "subcutaneous abdominal fat" EXACT [] +synonym: "subcutaneous fat of abdominal region" EXACT [] +xref: CALOHA:TS-2406 +is_a: UBERON:0002190 ! subcutaneous adipose tissue +is_a: UBERON:0007808 ! adipose tissue of abdominal region +intersection_of: UBERON:0001013 ! adipose tissue +intersection_of: part_of UBERON:0000916 ! abdomen +intersection_of: part_of UBERON:0002072 ! hypodermis +property_value: dc-contributor https://github.com/cindyJax +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/paulacalipho + +[Term] +id: UBERON:0014456 +name: extraperitoneal space +def: "The extraperitoneal space is the portion of the abdomen and pelvis which does not lie within peritoneum. It includes: Retroperitoneal space Retropubic space The space in the pelvis is divided into the following components: prevesical space perivesical space perirectal space" [http://en.wikipedia.org/wiki/Extraperitoneal_space] +synonym: "spatium extraperitoneale" EXACT LATIN [http://en.wikipedia.org/wiki/Extraperitoneal_space] +xref: Extraperitoneal:space +xref: FMA:14730 +xref: http://linkedlifedata.com/resource/umls/id/C0230197 +xref: http://www.snomedbrowser.com/Codes/Details/368076004 +xref: NCIT:C92208 +xref: UMLS:C0230197 {source="ncithesaurus:Extraperitoneal_Space"} +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0000916 ! abdomen + +[Term] +id: UBERON:0014457 +name: obsolete adult eye primordium +def: "." [EFO:0000240] +comment: obsolete as it groups developmentally very different structures +subset: efo_slim +synonym: "adult eye primordium early" EXACT [EFO:0000240] +xref: EFO:0000240 +is_obsolete: true +consider: FBbt:10005249 +consider: UBERON:0003071 +consider: XAO:0000227 + +[Term] +id: UBERON:0014458 +name: female bulbospongiosus muscle +def: "A bulbospongiosus muscle that is part of a female reproductive system." [OBOL:automatic] +synonym: "bulbospongiosus of female" EXACT [] +synonym: "female bulbospongiosus" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/244974000 +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0011389 ! bulbospongiosus muscle +intersection_of: UBERON:0011389 ! bulbospongiosus muscle +intersection_of: part_of UBERON:0000474 ! female reproductive system +relationship: part_of UBERON:0000474 ! female reproductive system + +[Term] +id: UBERON:0014459 +name: temporal fenestra +def: "One of two bilaterally symmetrical holes (fenestrae) in the temporal bone." [http://en.wikipedia.org/wiki/Temporal_fenestra#Temporal_fenestrae] +synonym: "temporal fenestrae" RELATED PLURAL [] +is_a: UBERON:0004705 ! fenestra +intersection_of: UBERON:0004705 ! fenestra +intersection_of: part_of UBERON:0001678 ! temporal bone +relationship: part_of UBERON:0001678 ! temporal bone + +[Term] +id: UBERON:0014460 +name: supratemporal fenestra +def: "A temporal fenestra in the upper part of the temporal bone." [http://en.wikipedia.org/wiki/Skull] +synonym: "supratemporal fenestrae" RELATED PLURAL [] +synonym: "upper temporal fenestra" EXACT [] +is_a: UBERON:0014459 ! temporal fenestra + +[Term] +id: UBERON:0014461 +name: infratemporal fenestra +def: "An infratemporal fenestra, also called the lateral temporal fenestra is an opening in the skull behind the orbit in some animals." [http://en.wikipedia.org/wiki/Infratemporal_fenestra] +synonym: "infratemporal fenestrae" RELATED PLURAL [] +synonym: "lateral temporal fenestra" EXACT [] +synonym: "lower temporal fenestra" EXACT [] +xref: Infratemporal:fenestra +is_a: UBERON:0014459 ! temporal fenestra + +[Term] +id: UBERON:0014462 +name: obsolete ptychocyst +def: "A cnida that is glutinous and is capable of sticking to prey. Found on burrowing (tube) anemones, which help create the tube in which the animal lives." [http://en.wikipedia.org/wiki/Cnida#Types_of_cnidae, http://orcid.org/0000-0002-6601-2165] +comment: Will be added to GO or a cnidarian ontology +synonym: "glutinant cnida" EXACT [http://orcid.org/0000-0002-6601-2165] +is_obsolete: true + +[Term] +id: UBERON:0014463 +name: cardiac ganglion +def: "Any of the parasympathetic ganglia of the cardiac plexus between the arch of the aorta and the bifurcation of the pulmonary artery." [ISBN:0-683-40008-8, MP:0003685] +synonym: "cardiac ganglia" RELATED PLURAL [] +synonym: "cardiac ganglia set" EXACT [FMA:77582] +synonym: "cardiac ganglion of Wrisberg" EXACT [] +synonym: "ganglia cardiaca" EXACT [FMA:TA] +synonym: "ganglion of Wrisberg" EXACT [FMA:77582] +synonym: "Wrisberg ganglion" EXACT [MP:0003685] +xref: EMAPA:36644 +xref: FMA:77582 +xref: http://www.snomedbrowser.com/Codes/Details/57098005 +is_a: UBERON:0001808 ! parasympathetic ganglion +intersection_of: UBERON:0001808 ! parasympathetic ganglion +intersection_of: extends_fibers_into UBERON:0002008 ! cardiac nerve plexus +relationship: extends_fibers_into UBERON:0002008 ! cardiac nerve plexus + +[Term] +id: UBERON:0014464 +name: renal fat pad +def: "Encapsulated adipose tissue associated with the kidney" [MP:0008902] +subset: pheno_slim +synonym: "perirenal fat pad" RELATED [MP:0008902] +is_a: UBERON:0003427 ! abdominal fat pad +intersection_of: UBERON:0003916 ! fat pad +intersection_of: part_of UBERON:0002113 ! kidney +relationship: part_of UBERON:0002113 ! kidney + +[Term] +id: UBERON:0014465 +name: antorbital fenestra +def: "An antorbital fenestra is an opening in the skull, in front of the eye sockets. This skull formation first appeared in archosaurs during the Triassic Period. Living birds today possess antorbital fenestrae, but the feature has been lost in modern crocodilians. In some archosaur species, the opening has closed but its location is still marked by a depression, or fossa, on the surface of the skull. This is called an antorbital fossa." [http://en.wikipedia.org/wiki/Antorbital_fenestra] +synonym: "antorbital fenestrae" RELATED PLURAL [] +is_a: UBERON:0004705 ! fenestra +relationship: part_of UBERON:0003129 ! skull + +[Term] +id: UBERON:0014466 +name: subarachnoid fissure +xref: FMA:75136 +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0000315 ! subarachnoid space + +[Term] +id: UBERON:0014468 +name: ansoparamedian fissure of cerebellum +def: "Fissure between cerebellar hemispheric lobules VIIBi and VIIBii." [NLXANAT:20081256] +synonym: "ansoparamedian fissure" EXACT [NLXANAT:20081256] +synonym: "fissura ansoparamedianis" EXACT [FMA:TA] +synonym: "fissura lunogracilis" EXACT LATIN [FMA:75137, FMA:TA] +synonym: "lunogracile fissure" EXACT [NLXANAT:20081256] +synonym: "lunogracile fissure of cerebellum" EXACT [FMA:75137] +xref: BAMS:apf +xref: BAMS:apmf +xref: DHBA:266441733 +xref: FMA:75137 +xref: HBA:9413 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2272 +xref: MBA:43 +xref: NLXANAT:20081256 +is_a: UBERON:0003980 ! cerebellum fissure + +[Term] +id: UBERON:0014471 +name: primary fissure of cerebellum +def: "The monticulus of the cerebellum is divided by the primary fissure (or preclival fissure) into an anterior, raised part, the culmen or summit, and a posterior sloped part, the clivus; the quadrangular lobule is similarly divided." [http://en.wikipedia.org/wiki/Primary_fissure_of_cerebellum] +synonym: "fissura preclivalis" EXACT [FMA:TA] +synonym: "fissura prima" EXACT LATIN [FMA:83729, FMA:TA] +synonym: "fissura prima cerebelli" EXACT LATIN [FMA:83729, FMA:TA] +synonym: "fissura superior anterior" EXACT LATIN [FMA:83729, FMA:TA] +synonym: "preclival fissure" EXACT [FMA:83729] +synonym: "preclival fissure" RELATED [http://en.wikipedia.org/wiki/Primary_fissure_of_cerebellum] +synonym: "primary fissure" BROAD [NLXANAT:20081253] +synonym: "primary sulcus of cerebellum" EXACT [FMA:83729] +xref: BAMS:pfcb +xref: FMA:83729 +xref: HBA:9410 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=648 +xref: http://en.wikipedia.org/wiki/Primary_fissure_of_cerebellum +xref: http://www.snomedbrowser.com/Codes/Details/314164007 +xref: MBA:1103 +xref: NLXANAT:20081253 +is_a: UBERON:0003980 ! cerebellum fissure + +[Term] +id: UBERON:0014473 +name: precentral fissure of cerebellum +def: "Fissure between cerebellar lobules I and II." [NLXANAT:20081251] +synonym: "fissura postlingualis cerebelli" EXACT [FMA:TA] +synonym: "fissura praecentralis" EXACT LATIN [FMA:83731, FMA:TA] +synonym: "fissura precentralis cerebelli" EXACT LATIN [FMA:83731, FMA:TA] +synonym: "post-lingual fissure of cerebellum" EXACT [FMA:83731] +synonym: "postlingual fissure" EXACT [FMA:83731] +synonym: "precentral fissure" EXACT [NLXANAT:20081251] +xref: BAMS:pce +xref: BAMS:pcn +xref: BAMS:prfcb +xref: FMA:83731 +xref: HBA:9407 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=651 +xref: http://www.snomedbrowser.com/Codes/Details/18716004 +xref: MBA:1087 +xref: NLXANAT:20081251 +is_a: UBERON:0003980 ! cerebellum fissure +relationship: part_of UBERON:0002131 {source="NIFSTD"} ! anterior lobe of cerebellum + +[Term] +id: UBERON:0014474 +name: postcentral fissure of cerebellum +synonym: "fissura postcentralis cerebelli" EXACT [FMA:TA] +synonym: "fissura praeculminata" EXACT LATIN [FMA:83732, FMA:TA] +synonym: "post-central fissure of cerebellum" EXACT [FMA:83732] +synonym: "postcentral fissure" BROAD [] +synonym: "postcentral fissure-2" EXACT [FMA:83732] +xref: BAMS:pofcb +xref: FMA:83732 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=652 +is_a: UBERON:0003980 ! cerebellum fissure + +[Term] +id: UBERON:0014475 +name: endostylar duct +def: "A duct in ammocetes (larval lamprey) that is reputed to connect the endostylar lumen to the pharyngeal lumen. Resembles the thyroglossal duct." [http://www.ncbi.nlm.nih.gov/pubmed/15592682, https://github.com/obophenotype/uberon/issues/285] +synonym: "duct of endostyle" EXACT [] +is_a: UBERON:0000025 ! tube +intersection_of: UBERON:0000025 ! tube +intersection_of: part_of UBERON:0006870 ! endostyle +relationship: part_of UBERON:0006870 ! endostyle + +[Term] +id: UBERON:0014477 +name: thoracic skeleton +def: "Subdivision of skeletal system that consists of all skeletal elements in the thoracic region of the trunk. In most vertebrates this is the rib cage and sternum." [http://en.wikipedia.org/wiki/Rib_cage, https://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "skeleton of thorax" EXACT [] +synonym: "thoracic part of axial skeleton" EXACT [] +synonym: "thoracic skeleton" EXACT [EHDAA2:0002013] +xref: EHDAA2:0002013 +xref: FMA:77169 +xref: Thoracic:skeleton +is_a: UBERON:0010912 ! subdivision of skeleton +relationship: part_of UBERON:0000915 ! thoracic segment of trunk +relationship: part_of UBERON:0002090 ! postcranial axial skeleton + +[Term] +id: UBERON:0014478 +name: rib skeletal system +def: "Subdivision of skeletal system that consists of all ribs and rib joints in an organism. In many vertebrates this consists of the combination of the rib cage and all rib joints, but some vertebrates have ribs outside the thoracic rib cage." [https://orcid.org/0000-0002-6601-2165] +synonym: "rib series" EXACT [TAO:0002100] +synonym: "rib skeleton" RELATED [] +synonym: "set of all ribs" RELATED [FMA:265719] +xref: FMA:265719 +xref: TAO:0002100 +is_a: UBERON:0000075 ! subdivision of skeletal system +relationship: composed_primarily_of UBERON:0015019 ! rib endochondral element +relationship: has_part UBERON:0003252 ! thoracic rib cage +relationship: part_of UBERON:0011138 ! postcranial axial skeletal system + +[Term] +id: UBERON:0014479 +name: elephant trunk +def: "An appendage formed by the fusion of the nose and upper lip." [http://en.wikipedia.org/wiki/Elephant#Trunk, https://github.com/obophenotype/uberon/issues/295] +synonym: "proboscis" BROAD [] +synonym: "trunk" BROAD INCONSISTENT [] +synonym: "trunk of elephant" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/41253007 +is_a: UBERON:0000026 ! appendage +relationship: has_fused_element UBERON:0001834 ! upper lip +relationship: has_fused_element UBERON:0007827 ! external nose +relationship: part_of UBERON:0000033 ! head +relationship: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0014480 +name: blood feather +def: "A developing feather" [http://en.wikipedia.org/wiki/Pin_feather] +synonym: "pin feather" RELATED [] +xref: http://www.snomedbrowser.com/Codes/Details/413670006 +xref: Pin:feather +is_a: UBERON:0000022 ! feather + +[Term] +id: UBERON:0014481 +name: sex skin +def: "An area of skin adjacent to the female external genitals of various lower primates that undergo marked alteration in turgidity and often in color during estrus." [http://www.merriam-webster.com/dictionary/sex%20skin] +xref: http://www.snomedbrowser.com/Codes/Details/113175000 +is_a: UBERON:0000014 ! zone of skin +relationship: adjacent_to UBERON:0005056 ! external female genitalia + +[Term] +id: UBERON:0014482 +name: ischial callosity +def: "An area of hardened, leathery skin on either side of the base of the tail on the rump." [http://pin.primate.wisc.edu/factsheets/glossary] +is_a: UBERON:0001415 ! skin of pelvis +relationship: part_of UBERON:0005473 ! sacral region + +[Term] +id: UBERON:0014483 +name: distal phalanx of digit 1 +def: "A distal phalanx that is part of a digit 1 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 1 distal phalanx" EXACT [PHENOSCAPE:wd] +synonym: "digit I P3" RELATED [] +synonym: "distal phalanx of digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "distal phalanx of first digit" EXACT [] +synonym: "first distal phalanx" RELATED [] +is_a: UBERON:0004300 ! distal phalanx +intersection_of: UBERON:0004300 ! distal phalanx +intersection_of: part_of UBERON:0006048 ! digit 1 +relationship: part_of UBERON:0006048 ! digit 1 +relationship: part_of UBERON:5106048 ! digit 1 digitopodial skeleton + +[Term] +id: UBERON:0014484 +name: distal phalanx of digit 2 +def: "A distal phalanx that is part of a digit 2 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +synonym: "2nd digit distal phalanx" EXACT [] +synonym: "digit 2 distal phalanx" EXACT [PHENOSCAPE:wd] +synonym: "digit II P3" RELATED [] +synonym: "distal phalanx of 2nd digit" EXACT [] +synonym: "distal phalanx of digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "distal phalanx of index digit" EXACT [] +synonym: "distal phalanx of second digit" EXACT [] +synonym: "second digit distal phalanx" EXACT [] +synonym: "second distal phalanx" EXACT [] +is_a: UBERON:0004300 ! distal phalanx +intersection_of: UBERON:0004300 ! distal phalanx +intersection_of: part_of UBERON:0006049 ! digit 2 +relationship: part_of UBERON:0006049 ! digit 2 +relationship: part_of UBERON:5106049 ! digit 2 digitopodial skeleton + +[Term] +id: UBERON:0014485 +name: distal phalanx of digit 3 +def: "A distal phalanx that is part of a digit 3. In odd-toes ungulates (Perissodactyla e.g. horses) this is called the coffin bone. In even-toed ungulates (Artiodactyla e.g cattle) this is associated with the medial claw." [http://en.wikipedia.org/wiki/Coffin_bone, http://en.wikipedia.org/wiki/Equine_forelimb_anatomy#Distal_phalanx, http://orcid.org/0000-0002-6601-2165] +synonym: "3rd digit distal phalanx" EXACT [] +synonym: "coffin bone" NARROW [NCBITaxon:9787] +synonym: "digit 3 distal phalanx" EXACT [PHENOSCAPE:wd] +synonym: "digit III P3" RELATED [] +synonym: "distal phalanx of 3rd digit" EXACT [] +synonym: "distal phalanx of digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "distal phalanx of middle digit" EXACT [] +synonym: "distal phalanx of third digit" EXACT [] +synonym: "equine 3rd phalanx of digit 3" EXACT [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] +synonym: "equine distal phalanx" EXACT [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] +synonym: "medial claw of artiodactyl" NARROW [NCBITaxon:91561] +synonym: "medial claw of ruminant hoof" NARROW [NCBITaxon:91561] +synonym: "medial ungual phalanx of artiodactyl" NARROW [NCBITaxon:91561] +synonym: "pedal bone" NARROW [NCBITaxon:9787] +synonym: "third digit distal phalanx" EXACT [] +synonym: "third distal phalanx" EXACT [] +xref: Coffin:bone +xref: http://www.snomedbrowser.com/Codes/Details/370666003 +xref: http://www.snomedbrowser.com/Codes/Details/370671005 +xref: http://www.snomedbrowser.com/Codes/Details/410030004 +is_a: UBERON:0004300 ! distal phalanx +intersection_of: UBERON:0004300 ! distal phalanx +intersection_of: part_of UBERON:0006050 ! digit 3 +relationship: part_of UBERON:0006050 ! digit 3 +relationship: part_of UBERON:5106050 ! digit 3 digitopodial skeleton + +[Term] +id: UBERON:0014486 +name: distal phalanx of digit 4 +def: "A distal phalanx that is part of a digit 4 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +synonym: "4th digit distal phalanx" EXACT [] +synonym: "digit 4 distal phalanx" EXACT [PHENOSCAPE:wd] +synonym: "digit IV P3" RELATED [] +synonym: "distal phalanx of 4th digit" EXACT [] +synonym: "distal phalanx of digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "distal phalanx of fourth digit" EXACT [] +synonym: "distal phalanx of ring digit" EXACT [] +synonym: "fourth digit distal phalanx" EXACT [] +synonym: "fourth distal phalanx" EXACT [] +synonym: "lateral claw of artiodactyl" NARROW [NCBITaxon:91561] +synonym: "lateral claw of ruminant hoof" NARROW [NCBITaxon:91561] +synonym: "lateral ungual phalanx of artiodactyl" NARROW [NCBITaxon:91561] +xref: http://www.snomedbrowser.com/Codes/Details/370667007 +xref: http://www.snomedbrowser.com/Codes/Details/370670006 +is_a: UBERON:0004300 ! distal phalanx +intersection_of: UBERON:0004300 ! distal phalanx +intersection_of: part_of UBERON:0006051 ! digit 4 +relationship: part_of UBERON:0006051 ! digit 4 +relationship: part_of UBERON:5106051 ! digit 4 digitopodial skeleton + +[Term] +id: UBERON:0014487 +name: distal phalanx of digit 5 +def: "A distal phalanx that is part of a digit 5 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +synonym: "5th digit distal phalanx" EXACT [] +synonym: "digit 5 distal phalanx" EXACT [PHENOSCAPE:wd] +synonym: "digit V P3" RELATED [] +synonym: "distal phalanx of 5th digit" EXACT [] +synonym: "distal phalanx of digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "distal phalanx of fifth digit" EXACT [] +synonym: "distal phalanx of little digit" EXACT [] +synonym: "fifth digit distal phalanx" EXACT [] +synonym: "fifth distal phalanx" EXACT [] +is_a: UBERON:0004300 ! distal phalanx +intersection_of: UBERON:0004300 ! distal phalanx +intersection_of: part_of UBERON:0006052 ! digit 5 +relationship: part_of UBERON:0006052 ! digit 5 +relationship: part_of UBERON:5106052 ! digit 5 digitopodial skeleton + +[Term] +id: UBERON:0014488 +name: middle phalanx of digit 2 +def: "A middle phalanx that is part of a digit 2 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +synonym: "2nd digit intermediate phalanx" EXACT [] +synonym: "2nd digit middle phalanx" EXACT [] +synonym: "2nd digit of intermediate phalanx" EXACT [] +synonym: "2nd digit of middle phalanx" EXACT [] +synonym: "digit 2 intermediate phalanx" EXACT [] +synonym: "digit 2 middle phalanx" EXACT [] +synonym: "digit II P2" RELATED [] +synonym: "intermediate phalanx of 2nd digit" EXACT [] +synonym: "intermediate phalanx of digit 2" EXACT [] +synonym: "intermediate phalanx of second digit" EXACT [] +synonym: "middle phalanx of 2nd digit" EXACT [] +synonym: "middle phalanx of digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "middle phalanx of index digit" EXACT [] +synonym: "middle phalanx of second digit" EXACT [] +synonym: "second digit intermediate phalanx" EXACT [] +synonym: "second digit middle phalanx" EXACT [] +synonym: "second middle phalanx" EXACT [] +is_a: UBERON:0004301 ! middle phalanx +intersection_of: UBERON:0004301 ! middle phalanx +intersection_of: part_of UBERON:0006049 ! digit 2 +relationship: part_of UBERON:0006049 ! digit 2 +relationship: part_of UBERON:5106049 ! digit 2 digitopodial skeleton + +[Term] +id: UBERON:0014489 +name: middle phalanx of digit 3 +def: "A middle phalanx that is part of a digit 3 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +synonym: "3rd digit intermediate phalanx" EXACT [] +synonym: "3rd digit middle phalanx" EXACT [] +synonym: "3rd digit of intermediate phalanx" EXACT [] +synonym: "3rd digit of middle phalanx" EXACT [] +synonym: "digit 3 intermediate phalanx" EXACT [] +synonym: "digit 3 middle phalanx" EXACT [] +synonym: "digit III P2" RELATED [] +synonym: "intermediate phalanx of 3rd digit" EXACT [] +synonym: "intermediate phalanx of digit 3" EXACT [] +synonym: "intermediate phalanx of third digit" EXACT [] +synonym: "middle phalanx of 3rd digit" EXACT [] +synonym: "middle phalanx of digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "middle phalanx of middle digit" EXACT [] +synonym: "middle phalanx of third digit" EXACT [] +synonym: "third digit intermediate phalanx" EXACT [] +synonym: "third digit middle phalanx" EXACT [] +synonym: "third middle phalanx" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/370676000 +xref: http://www.snomedbrowser.com/Codes/Details/370730008 +is_a: UBERON:0004301 ! middle phalanx +intersection_of: UBERON:0004301 ! middle phalanx +intersection_of: part_of UBERON:0006050 ! digit 3 +relationship: part_of UBERON:0006050 ! digit 3 +relationship: part_of UBERON:5106050 ! digit 3 digitopodial skeleton + +[Term] +id: UBERON:0014490 +name: middle phalanx of digit 4 +def: "A middle phalanx that is part of a digit 4 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +synonym: "4th digit intermediate phalanx" EXACT [] +synonym: "4th digit middle phalanx" EXACT [] +synonym: "4th digit of intermediate phalanx" EXACT [] +synonym: "4th digit of middle phalanx" EXACT [] +synonym: "digit 4 intermediate phalanx" EXACT [] +synonym: "digit 4 middle phalanx" EXACT [] +synonym: "digit IV P2" RELATED [] +synonym: "fourth digit intermediate phalanx" EXACT [] +synonym: "fourth digit middle phalanx" EXACT [] +synonym: "fourth middle phalanx" EXACT [] +synonym: "intermediate phalanx of 4th digit" EXACT [] +synonym: "intermediate phalanx of digit 4" EXACT [] +synonym: "intermediate phalanx of fourth digit" EXACT [] +synonym: "middle phalanx of 4th digit" EXACT [] +synonym: "middle phalanx of digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "middle phalanx of fourth digit" EXACT [] +synonym: "middle phalanx of ring digit" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/370675001 +is_a: UBERON:0004301 ! middle phalanx +intersection_of: UBERON:0004301 ! middle phalanx +intersection_of: part_of UBERON:0006051 ! digit 4 +relationship: part_of UBERON:0006051 ! digit 4 +relationship: part_of UBERON:5106051 ! digit 4 digitopodial skeleton + +[Term] +id: UBERON:0014491 +name: middle phalanx of digit 5 +def: "A middle phalanx that is part of a digit 5 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +synonym: "5th digit intermediate phalanx" EXACT [] +synonym: "5th digit middle phalanx" EXACT [] +synonym: "5th digit of intermediate phalanx" EXACT [] +synonym: "5th digit of middle phalanx" EXACT [] +synonym: "digit 5 intermediate phalanx" EXACT [] +synonym: "digit 5 middle phalanx" EXACT [] +synonym: "digit V P2" RELATED [] +synonym: "fifth digit intermediate phalanx" EXACT [] +synonym: "fifth digit middle phalanx" EXACT [] +synonym: "fifth middle phalanx" EXACT [] +synonym: "intermediate phalanx of 5th digit" EXACT [] +synonym: "intermediate phalanx of digit 5" EXACT [] +synonym: "intermediate phalanx of fifth digit" EXACT [] +synonym: "middle phalanx of 5th digit" EXACT [] +synonym: "middle phalanx of digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "middle phalanx of fifth digit" EXACT [] +synonym: "middle phalanx of little digit" EXACT [] +is_a: UBERON:0004301 ! middle phalanx +intersection_of: UBERON:0004301 ! middle phalanx +intersection_of: part_of UBERON:0006052 ! digit 5 +relationship: part_of UBERON:0006052 ! digit 5 +relationship: part_of UBERON:5106052 ! digit 5 digitopodial skeleton + +[Term] +id: UBERON:0014501 +name: proximal phalanx of digit 1 +def: "A proximal phalanx that is part of a autopod digit 1 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +synonym: "digit I P1" EXACT [] +synonym: "digit I-1" EXACT [PHENOSCAPE:wd] +synonym: "first proximal phalanx of autopod" EXACT [] +synonym: "proximal phalanx of digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal phalanx of first digit of autopod" EXACT [] +is_a: UBERON:0004302 ! proximal phalanx +intersection_of: UBERON:0004302 ! proximal phalanx +intersection_of: part_of UBERON:0006048 ! digit 1 +relationship: part_of UBERON:0006048 ! digit 1 +relationship: part_of UBERON:5106048 ! digit 1 digitopodial skeleton + +[Term] +id: UBERON:0014502 +name: proximal phalanx of digit 2 +def: "A proximal phalanx that is part of a autopod digit 2 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +synonym: "2nd digit of autopod proximal phalanx" EXACT [] +synonym: "2nd digit proximal phalanx" EXACT [] +synonym: "autopod digit 2 proximal phalanx" EXACT [] +synonym: "digit II-1" EXACT [PHENOSCAPE:wd] +synonym: "digit IU P1" EXACT [] +synonym: "proximal phalanx of 2nd digit" EXACT [] +synonym: "proximal phalanx of 2nd digit of autopod" EXACT [] +synonym: "proximal phalanx of digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal phalanx of index digit" EXACT [] +synonym: "proximal phalanx of second digit" EXACT [] +synonym: "proximal phalanx of second digit of autopod" EXACT [] +synonym: "second digit proximal phalanx" EXACT [] +synonym: "second proximal phalanx of autopod" EXACT [] +is_a: UBERON:0004302 ! proximal phalanx +intersection_of: UBERON:0004302 ! proximal phalanx +intersection_of: part_of UBERON:0006049 ! digit 2 +relationship: part_of UBERON:0006049 ! digit 2 +relationship: part_of UBERON:5106049 ! digit 2 digitopodial skeleton + +[Term] +id: UBERON:0014503 +name: proximal phalanx of digit 3 +def: "A proximal phalanx that is part of a autopod digit 3 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +synonym: "3rd digit of autopod proximal phalanx" EXACT [] +synonym: "3rd digit proximal phalanx" EXACT [] +synonym: "autopod digit 3 proximal phalanx" EXACT [] +synonym: "digit III P1" EXACT [] +synonym: "digit III-1" EXACT [PHENOSCAPE:wd] +synonym: "proximal phalanx of 3rd digit" EXACT [] +synonym: "proximal phalanx of 3rd digit of autopod" EXACT [] +synonym: "proximal phalanx of digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal phalanx of middle digit" EXACT [] +synonym: "proximal phalanx of third digit" EXACT [] +synonym: "proximal phalanx of third digit of autopod" EXACT [] +synonym: "third digit proximal phalanx" EXACT [] +synonym: "third proximal phalanx of autopod" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/370732000 +xref: http://www.snomedbrowser.com/Codes/Details/370733005 +is_a: UBERON:0004302 ! proximal phalanx +intersection_of: UBERON:0004302 ! proximal phalanx +intersection_of: part_of UBERON:0006050 ! digit 3 +relationship: part_of UBERON:0006050 ! digit 3 +relationship: part_of UBERON:5106050 ! digit 3 digitopodial skeleton + +[Term] +id: UBERON:0014504 +name: proximal phalanx of digit 4 +def: "A proximal phalanx that is part of a autopod digit 4 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +synonym: "4th digit of autopod proximal phalanx" EXACT [] +synonym: "4th digit proximal phalanx" EXACT [] +synonym: "autopod digit 4 proximal phalanx" EXACT [] +synonym: "digit IV P1" EXACT [] +synonym: "digit IV-1" EXACT [PHENOSCAPE:wd] +synonym: "fourth digit proximal phalanx" EXACT [] +synonym: "fourth proximal phalanx of autopod" EXACT [] +synonym: "proximal phalanx of 4th digit" EXACT [] +synonym: "proximal phalanx of 4th digit of autopod" EXACT [] +synonym: "proximal phalanx of digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal phalanx of fourth digit" EXACT [] +synonym: "proximal phalanx of fourth digit of autopod" EXACT [] +synonym: "proximal phalanx of ring digit" EXACT [] +is_a: UBERON:0004302 ! proximal phalanx +intersection_of: UBERON:0004302 ! proximal phalanx +intersection_of: part_of UBERON:0006051 ! digit 4 +relationship: part_of UBERON:0006051 ! digit 4 +relationship: part_of UBERON:5106051 ! digit 4 digitopodial skeleton + +[Term] +id: UBERON:0014505 +name: proximal phalanx of digit 5 +def: "A proximal phalanx that is part of a autopod digit 5 [Automatically generated definition]." [http://orcid.org/0000-0002-6601-2165] +synonym: "5th digit of autopod proximal phalanx" EXACT [] +synonym: "5th digit proximal phalanx" EXACT [] +synonym: "autopod digit 5 proximal phalanx" EXACT [] +synonym: "digit V P1" EXACT [] +synonym: "digit V-1" EXACT [PHENOSCAPE:wd] +synonym: "fifth digit proximal phalanx" EXACT [] +synonym: "fifth proximal phalanx of autopod" EXACT [] +synonym: "proximal phalanx of 5th digit" EXACT [] +synonym: "proximal phalanx of 5th digit of autopod" EXACT [] +synonym: "proximal phalanx of digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "proximal phalanx of fifth digit" EXACT [] +synonym: "proximal phalanx of fifth digit of autopod" EXACT [] +synonym: "proximal phalanx of little digit" EXACT [] +is_a: UBERON:0004302 ! proximal phalanx +intersection_of: UBERON:0004302 ! proximal phalanx +intersection_of: part_of UBERON:0006052 ! digit 5 +relationship: part_of UBERON:0006052 ! digit 5 +relationship: part_of UBERON:5106052 ! digit 5 digitopodial skeleton + +[Term] +id: UBERON:0014506 +name: distal interphalangeal joint of digit 3 +def: "A distal inter-phalangeal joint that is part of the 3rd digit." [http://orcid.org/0000-0002-6601-2165] +synonym: "coffin joint" NARROW [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] +synonym: "distal interphalangeal joint 3" RELATED [] +synonym: "distal interphalangeal joint of digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "equine distal interphalangeal joint" NARROW [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] +synonym: "equine second interphalangeal joint of limb digit III" NARROW [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] +xref: http://www.snomedbrowser.com/Codes/Details/196392002 +xref: http://www.snomedbrowser.com/Codes/Details/370892008 +xref: NCIT:C102292 +is_a: UBERON:0009768 ! distal interphalangeal joint +intersection_of: UBERON:0009768 ! distal interphalangeal joint +intersection_of: part_of UBERON:0006050 ! digit 3 +relationship: part_of UBERON:0006050 ! digit 3 + +[Term] +id: UBERON:0014507 +name: distal interphalangeal joint of pedal digit 3 +def: "A distal inter-phalangeal joint that is part of the 3rd pedal digit." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "distal interphalangeal joint of pedal digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "distal interphalangeal joint of third digit of foot" EXACT [FMA:35375] +synonym: "distal interphalangeal joint of third toe" EXACT [FMA:35375] +synonym: "equine distal interphalangeal joint of hindlimb" NARROW [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] +synonym: "hindlimb coffin joint" NARROW [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] +xref: FMA:35375 +xref: http://www.snomedbrowser.com/Codes/Details/361880001 +is_a: UBERON:0007726 ! interphalangeal joint of pedal digit 3 +is_a: UBERON:0014506 ! distal interphalangeal joint of digit 3 +intersection_of: UBERON:0009768 ! distal interphalangeal joint +intersection_of: part_of UBERON:0003633 ! pedal digit 3 + +[Term] +id: UBERON:0014508 +name: distal interphalangeal joint of manual digit 3 +def: "A distal inter-phalangeal joint that is part of the 3rd manual digit." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "distal interphalangeal joint of manual digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "distal interphalangeal joint of middle finger" EXACT [FMA:35337] +synonym: "equine distal interphalangeal joint of forelimb" NARROW [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] +synonym: "equine second interphalangeal joint of forelimb digit III" NARROW [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] +synonym: "forelimb coffin joint" NARROW [https://orcid.org/0000-0002-6601-2165, NCBITaxon:9788] +xref: FMA:35337 +xref: http://www.snomedbrowser.com/Codes/Details/361854002 +xref: http://www.snomedbrowser.com/Codes/Details/370683007 +is_a: UBERON:0007730 ! interphalangeal joint of manual digit 3 +is_a: UBERON:0014506 ! distal interphalangeal joint of digit 3 +intersection_of: UBERON:0009768 ! distal interphalangeal joint +intersection_of: part_of UBERON:0003623 ! manual digit 3 + +[Term] +id: UBERON:0014509 +name: distal sesamoid impar ligament +def: "A short wide fibrous structure that attaches proximally to the navicular (distal sesamoid) and distally to the palmar margin of the flexor surface of the distal phalanx" [http://orcid.org/0000-0002-6601-2165] +synonym: "distal sesamoidean impar ligament" EXACT [] +synonym: "DSIL" EXACT ABBREVIATION [] +synonym: "impar ligament of distal equine limb" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/370741005 +is_a: UBERON:0008846 ! skeletal ligament +relationship: connects UBERON:0004300 ! distal phalanx +relationship: connects UBERON:0010759 ! equine distal sesamoid +relationship: part_of UBERON:0006050 ! digit 3 + +[Term] +id: UBERON:0014510 +name: lamina of omasum +def: "A muscular sheet of the omasum wall consisting of two lateral layers and an intermediate layer of smooth muscle covered with non-glandular stratified squamous epithelium" [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/7978351] +synonym: "omasal lamina" EXACT [] +synonym: "omasal laminae" EXACT PLURAL [] +xref: http://www.snomedbrowser.com/Codes/Details/24667000 +is_a: UBERON:0004923 ! organ component layer +intersection_of: UBERON:0004923 ! organ component layer +intersection_of: has_part UBERON:0011952 ! non-glandular epithelium +intersection_of: has_part UBERON:0034933 ! layer of smooth muscle tissue +intersection_of: part_of UBERON:0007362 ! omasum +relationship: has_part UBERON:0011952 ! non-glandular epithelium +relationship: has_part UBERON:0034933 ! layer of smooth muscle tissue +relationship: part_of UBERON:0007362 ! omasum + +[Term] +id: UBERON:0014521 +name: anterodorsal nucleus of medial geniculate body +synonym: "ADMG" BROAD ABBREVIATION [BIRNLEX:1600, NIFSTD:NeuroNames_abbrevSource] +synonym: "anterodorsal nucleus of medial geniculate complex" EXACT [BIRNLEX:1600] +synonym: "anterodorsal nucleus of the medial geniculate body" RELATED [NeuroNames:852] +synonym: "nucleus corporis geniculati medialis, pars anterodorsalis" RELATED [BIRNLEX:1600] +xref: BAMS:MGad +xref: BIRNLEX:1600 +xref: HBA:4446 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=852 {source="BIRNLEX:1600"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=852 +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0001927 {source="NIFSTD"} ! medial geniculate body + +[Term] +id: UBERON:0014522 +name: dorsolateral oculomotor nucleus +synonym: "dorsolateral nucleus of oculomotor nuclear complex" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "nucleus dorsalis nervi oculomotorii" EXACT LATIN [] +synonym: "oculomotor nerve dorsolateral nucleus" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/369237002 +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus +relationship: part_of UBERON:0001715 ! oculomotor nuclear complex + +[Term] +id: UBERON:0014523 +name: oculomotor division of oculomotor nuclear complex +def: "A division of oculomotor nuclear complex that exists in organisms with electric organs which is responsible for eye movements." [ISBN:0471888893] +is_a: UBERON:0007245 ! nuclear complex of neuraxis +is_a: UBERON:0019267 ! gray matter of midbrain +relationship: part_of UBERON:0001715 ! oculomotor nuclear complex +relationship: present_in_taxon NCBITaxon:70846 + +[Term] +id: UBERON:0014524 +name: electromotor division of oculomotor nuclear complex +def: "A division of oculomotor nuclear complex that exists in organisms with electric organs which has axons terminating in the electric organs." [ISBN:0471888893] +is_a: UBERON:0007245 ! nuclear complex of neuraxis +is_a: UBERON:0019267 ! gray matter of midbrain +relationship: part_of UBERON:0001715 ! oculomotor nuclear complex +relationship: present_in_taxon NCBITaxon:70846 + +[Term] +id: UBERON:0014525 +name: limb of internal capsule of telencephalon +synonym: "internal capsule subdivision" EXACT [FMA:61951] +synonym: "limb of internal capsule" EXACT [] +synonym: "subdivision of internal capsule" EXACT [FMA:61951] +xref: FMA:61951 +xref: http://www.snomedbrowser.com/Codes/Details/119245007 +is_a: UBERON:0002437 ! cerebral hemisphere white matter +relationship: part_of UBERON:0001887 ! internal capsule of telencephalon + +[Term] +id: UBERON:0014526 +name: anterior limb of internal capsule +def: "Portion of internal capsule lying between the lenticular nucleus and the head of the caudate nucleus." [NLX:144257] +synonym: "anterior internal capsule" RELATED [ISBN:0123813611] +synonym: "anterior limb" RELATED [http://en.wikipedia.org/wiki/Anterior_limb_of_internal_capsule] +synonym: "capsula interna, pars anterior" EXACT LATIN [FMA:61952, FMA:TA] +synonym: "crus anterius capsulae internae" EXACT LATIN [FMA:61952, FMA:TA] +xref: BAMS:aic +xref: DHBA:10582 +xref: FMA:61952 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=199 +xref: http://en.wikipedia.org/wiki/Anterior_limb_of_internal_capsule +xref: http://www.snomedbrowser.com/Codes/Details/279295005 +xref: NLX:144257 +is_a: UBERON:0014525 {source="FMA"} ! limb of internal capsule of telencephalon +disjoint_from: UBERON:0014527 {source="lexical"} ! posterior limb of internal capsule + +[Term] +id: UBERON:0014527 +name: posterior limb of internal capsule +def: "Portion of internal capsule lying between the globus pallidus and the thalamus (Nolte, The Human Brain, 6th ed., 2009, pg 409, modified by MM)" [NLX:144258] +synonym: "capsula interna, pars posterior" EXACT LATIN [FMA:61954, FMA:TA] +synonym: "crus posterius capsulae internae" EXACT LATIN [FMA:61954, FMA:TA] +synonym: "posterior internal capsule" RELATED [] +synonym: "posterior limb" RELATED [http://en.wikipedia.org/wiki/Posterior_limb_of_internal_capsule] +synonym: "posterior limb of the internal capsule" RELATED [BAMS:pic] +xref: BAMS:pic +xref: DHBA:10584 +xref: FMA:61954 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=201 +xref: http://en.wikipedia.org/wiki/Posterior_limb_of_internal_capsule +xref: http://www.snomedbrowser.com/Codes/Details/279296006 +xref: NLX:144258 +is_a: UBERON:0014525 {source="FMA"} ! limb of internal capsule of telencephalon + +[Term] +id: UBERON:0014528 +name: extreme capsule +def: "Thin band of fibers separating the claustrum from the insular cortex" [NLXANAT:1010014] +synonym: "band of Baillarger" RELATED [http://en.wikipedia.org/wiki/Extreme_capsule] +synonym: "capsula extrema" RELATED [http://en.wikipedia.org/wiki/Extreme_capsule] +xref: BAMS:ex +xref: BAMS:exc +xref: DHBA:10574 +xref: Extreme:capsule +xref: FMA:61960 +xref: HBA:9246 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=254 +xref: http://www.snomedbrowser.com/Codes/Details/279301006 +xref: NLXANAT:1010014 +is_a: UBERON:0002437 {source="FMA"} ! cerebral hemisphere white matter + +[Term] +id: UBERON:0014529 +name: lenticular fasciculus +def: "The lenticular fasciculus is a tract connecting the globus pallidus to the Thalamic fasciculus. The thalamic fasciculus (composed of the lenticular fasciculus and ansa lenticularis) runs into the Thalamus. It connects the globus pallidus to the thalamus." [http://en.wikipedia.org/wiki/Lenticular_fasciculus] +synonym: "dorsal division of ansa lenticularis" EXACT [FMA:61976] +synonym: "fasciculus lenticularis" EXACT [FMA:TA] +synonym: "fasciculus lenticularis" RELATED LATIN [http://en.wikipedia.org/wiki/Lenticular_fasciculus] +synonym: "fasciculus lenticularis [h2]" EXACT [FMA:TA] +synonym: "field H2" RELATED [NLXANAT:1010015] +synonym: "field H2 of Forel" RELATED [NLXANAT:1010015] +synonym: "Forel's field H2" RELATED [NLXANAT:1010015] +synonym: "forel's field h2" EXACT [FMA:62067] +synonym: "lenticular fasciculus" EXACT [NLXANAT:1010015] +synonym: "lenticular fasciculus" EXACT [FMA:61976] +synonym: "lenticular fasciculus [h2]" EXACT [FMA:62067] +synonym: "lenticular fasciculus of diencephalon" EXACT [FMA:62067] +synonym: "lenticular fasciculus of telencephalon" EXACT [FMA:61976] +synonym: "tegmental area h2" EXACT [FMA:62067] +xref: BAMS:lenf_(H2) +xref: DHBA:10585 +xref: FMA:61976 +xref: FMA:62067 +xref: HBA:265505158 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3064 +xref: http://www.snomedbrowser.com/Codes/Details/5677006 +xref: Lenticular:fasciculus +xref: NLXANAT:1010015 +is_a: UBERON:0022254 ! ventral thalamic fasciculus + +[Term] +id: UBERON:0014530 +name: white matter lamina of neuraxis +synonym: "lamina of neuraxis" BROAD [FMA:83856] +synonym: "neuraxis lamina" BROAD [FMA:83856] +xref: FMA:83856 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +intersection_of: UBERON:0022303 ! nervous system cell part layer +intersection_of: part_of UBERON:0002316 ! white matter +relationship: part_of UBERON:0002316 ! white matter + +[Term] +id: UBERON:0014531 +name: white matter lamina of diencephalon +synonym: "diencephalon lamina" BROAD [FMA:62449] +synonym: "lamina of diencephalon" BROAD [FMA:62449] +xref: FMA:62449 +is_a: UBERON:0014530 ! white matter lamina of neuraxis +intersection_of: UBERON:0014530 ! white matter lamina of neuraxis +intersection_of: part_of UBERON:0001894 ! diencephalon +relationship: part_of UBERON:0001894 ! diencephalon + +[Term] +id: UBERON:0014532 +name: white matter lamina of cerebral hemisphere +synonym: "cerebral hemisphere lamina" BROAD [FMA:67951] +synonym: "lamina of cerebral hemisphere" BROAD [FMA:67951] +xref: FMA:67951 +is_a: UBERON:0014530 ! white matter lamina of neuraxis +intersection_of: UBERON:0014530 ! white matter lamina of neuraxis +intersection_of: part_of UBERON:0001869 ! cerebral hemisphere +relationship: part_of UBERON:0001869 ! cerebral hemisphere + +[Term] +id: UBERON:0014533 +name: medullary lamina of thalamus +def: "Medullary laminae of thalamus are layers of myelinated fibres that appear on cross sections of the thalamus. They also are commonly referred to as laminae medullares thalami or medullary layers of thalamus. The specific layers are: Lamina medullaris lateralis (external medullary lamina) - separates ventral and lateral thalamus from the subthalamus and thalamic reticular nucleus; Lamina medullaris medialis (internal medullary lamina) - positioned between the dorsomedial and ventral nuclei of thalamus, encloses the intralaminar nuclei (centromedian nucleus, paracentral, and central lateral)" [http://en.wikipedia.org/wiki/Medullary_laminae_of_thalamus] +synonym: "external medullary lamina" RELATED [http://en.wikipedia.org/wiki/Medullary_laminae_of_thalamus] +synonym: "internal medullary lamina" RELATED [http://en.wikipedia.org/wiki/Medullary_laminae_of_thalamus] +synonym: "laminae medullares thalami" RELATED [http://en.wikipedia.org/wiki/Medullary_laminae_of_thalamus] +synonym: "medullary layer of thalamus" RELATED [http://en.wikipedia.org/wiki/Medullary_laminae_of_thalamus] +synonym: "medullary layers of thalamus" RELATED [http://en.wikipedia.org/wiki/Medullary_laminae_of_thalamus] +xref: BAMS:Lam.med.thal +xref: http://en.wikipedia.org/wiki/Medullary_laminae_of_thalamus +is_a: UBERON:0014531 ! white matter lamina of diencephalon +relationship: part_of UBERON:0010225 ! thalamic complex + +[Term] +id: UBERON:0014534 +name: external medullary lamina of thalamus +def: "A medullary lamina that separates ventral and lateral thalamus from the subthalamus and thalamic reticular nucleus." [http://en.wikipedia.org/wiki/Medullary_laminae_of_thalamus] +synonym: "external medullary lamina" EXACT [FMA:62078] +synonym: "external medullary lamina of the thalamus" RELATED [BAMS:em] +synonym: "external medullary lamina of the thalamus" RELATED [BAMS:eml] +synonym: "lamella medullaris externa" EXACT LATIN [FMA:62078, FMA:TA] +synonym: "lamina medullaris externa" EXACT LATIN [FMA:62078, FMA:TA] +synonym: "lamina medullaris externa thalami" EXACT LATIN [FMA:62078, FMA:TA] +synonym: "lamina medullaris lateralis" BROAD LATIN [] +synonym: "lamina medullaris lateralis thalami" EXACT LATIN [FMA:TA] +synonym: "lamina medullaris thalami externa" EXACT LATIN [FMA:62078, FMA:TA] +xref: BAMS:em +xref: BAMS:eml +xref: DHBA:12038 +xref: FMA:62078 +xref: HBA:265505098 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=367 +xref: http://www.snomedbrowser.com/Codes/Details/369179004 +xref: MBA:1092 +is_a: UBERON:0014533 ! medullary lamina of thalamus +relationship: adjacent_to UBERON:0001900 ! ventral thalamus +relationship: adjacent_to UBERON:0001903 ! thalamic reticular nucleus + +[Term] +id: UBERON:0014537 +name: periamygdaloid cortex +def: "Is located ventral to the basal nucleus and has three subdivisions: the periamygdaloid cortex, the medial division, and the sulcal division." [NLX:144210] +synonym: "periamygdaloid area" RELATED [NLX:144210] +synonym: "periamygdaloid cortex" EXACT [NLX:144210] +xref: BAMS:PAC +xref: NLX:144210 +xref: Periamygdaloid:cortex +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex +relationship: part_of UBERON:0006108 {source="NIFSTD"} ! corticomedial nuclear complex + +[Term] +id: UBERON:0014538 +name: subdivision of spinal cord central canal +def: "A subdivision of the central canal of the spinal cord along its anterior-posterior axis. This is typically subdivided into cervical, thoracic, lumbar and sacral segments" [http://orcid.org/0000-0002-6601-2165] +subset: non_informative +synonym: "regional part of spinal cord central canal" EXACT HUMAN_PREFERRED [BIRNLEX:717] +xref: BIRNLEX:717 +is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0004111 ! anatomical conduit +intersection_of: subdivision_of UBERON:0002291 ! central canal of spinal cord +relationship: part_of UBERON:0002291 ! central canal of spinal cord +relationship: subdivision_of UBERON:0002291 ! central canal of spinal cord + +[Term] +id: UBERON:0014539 +name: precommissural fornix of forebrain +def: "Part of fornix extending from the body that curves ventrally rostral to the crossing of the anterior commissure ending in the septal nuclei" [BIRNLEX:1033, https://github.com/obophenotype/uberon/issues/1277] +synonym: "fornix precommissuralis" EXACT LATIN [FMA:61967, FMA:TA] +synonym: "precommissural fornix" EXACT [BIRNLEX:1033] +xref: BAMS:fpr +xref: BAMS:fxpr +xref: BAMS:pcf +xref: BAMS:pcfx +xref: BIRNLEX:1033 +xref: FMA:61967 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=270 +xref: http://linkedlifedata.com/resource/umls/id/C0175237 +xref: UMLS:C0175237 {source="BIRNLEX:1033"} +is_a: UBERON:0007702 ! tract of brain +relationship: part_of UBERON:0000052 ! fornix of brain + +[Term] +id: UBERON:0014540 +name: white matter lamina of cerebellum +def: "The white laminae of cerebellum is subdivision of the cerebellar cortex comprised of myelinated axons lying deep to the granule cell layer of the cerebellar cortex." [http://neurolex.org/wiki/Category\:White_laminae_of_cerebellum] +synonym: "isthmus cinguli" RELATED LATIN [NeuroNames:163] +synonym: "isthmus gyri cingulatus" RELATED LATIN [NeuroNames:163] +synonym: "isthmus gyri cinguli" RELATED LATIN [NeuroNames:163] +synonym: "isthmus of gyrus fornicatus" RELATED LATIN [NeuroNames:163] +synonym: "isthmus of the cingulate gyrus" RELATED [NeuroNames:163] +synonym: "isthmus-2" RELATED LATIN [NeuroNames:163] +synonym: "lamina alba of cerebellar cortex" EXACT [] +synonym: "laminae albae of cerebellar cortex" EXACT [] +synonym: "laminae albae of cerebellar cortex" RELATED PLURAL [BIRNLEX:1105] +synonym: "white lamina of cerebellum" EXACT [] +synonym: "white laminae of cerebellum" EXACT PLURAL [BIRNLEX:1105] +xref: BIRNLEX:1105 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=163 {source="BIRNLEX:1105"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=163 +xref: http://linkedlifedata.com/resource/umls/id/C0228472 +xref: http://www.snomedbrowser.com/Codes/Details/362413004 +xref: UMLS:C0228472 {source="BIRNLEX:1105"} +is_a: UBERON:0014530 ! white matter lamina of neuraxis +intersection_of: UBERON:0014530 ! white matter lamina of neuraxis +intersection_of: part_of UBERON:0002037 ! cerebellum +relationship: immediately_deep_to UBERON:0002956 ! granular layer of cerebellar cortex +relationship: part_of UBERON:0002037 ! cerebellum + +[Term] +id: UBERON:0014541 +name: thoracic division of spinal cord central canal +def: "Part of spinal cord central canal contained in the thoracic spinal cord. It is continuous rostrally with the cervical spinal cord central canal and caudally with the lumbar spinal cord central canal." [BIRNLEX:1395] +synonym: "thoracic spinal cord central canal" EXACT HUMAN_PREFERRED [BIRNLEX:1395] +xref: BIRNLEX:1395 +xref: FMA:321588 +xref: http://linkedlifedata.com/resource/umls/id/C0228637 +xref: http://www.snomedbrowser.com/Codes/Details/71118002 +xref: UMLS:C0228637 {source="BIRNLEX:1395"} +is_a: UBERON:0014538 {source="NIFSTD"} ! subdivision of spinal cord central canal +intersection_of: UBERON:0014538 ! subdivision of spinal cord central canal +intersection_of: subdivision_of UBERON:0003038 ! thoracic spinal cord +relationship: subdivision_of UBERON:0003038 ! thoracic spinal cord + +[Term] +id: UBERON:0014542 +name: cervical division of cord spinal central canal +def: "Part of central canal contained within the cervical spinal cord. It is continuous caudally with the thoracic spinal cord central canal and rostrally with the fourth ventricle of the brain via the obex" [BIRNLEX:1511] +synonym: "cervical spinal cord central canal" EXACT HUMAN_PREFERRED [BIRNLEX:1511] +xref: BIRNLEX:1511 +xref: FMA:321590 +xref: http://linkedlifedata.com/resource/umls/id/C0228620 +xref: http://www.snomedbrowser.com/Codes/Details/280403009 +xref: UMLS:C0228620 {source="BIRNLEX:1511"} +is_a: UBERON:0014538 {source="NIFSTD"} ! subdivision of spinal cord central canal +intersection_of: UBERON:0014538 ! subdivision of spinal cord central canal +intersection_of: subdivision_of UBERON:0002726 ! cervical spinal cord +relationship: subdivision_of UBERON:0002726 ! cervical spinal cord + +[Term] +id: UBERON:0014543 +name: lumbar division of spinal cord central canal +def: "Part of central canal lying within the lumbar spinal cord. It is continuous rostrally with the central canal of the thoracic spinal cord and caudally with the central canal of the sacral spinal cord." [BIRNLEX:1604] +synonym: "lumbar spinal cord central canal" EXACT HUMAN_PREFERRED [BIRNLEX:1604] +xref: BIRNLEX:1604 +xref: FMA:321589 +xref: http://linkedlifedata.com/resource/umls/id/C0228644 +xref: http://www.snomedbrowser.com/Codes/Details/280406001 +xref: UMLS:C0228644 {source="BIRNLEX:1604"} +is_a: UBERON:0014538 {source="NIFSTD"} ! subdivision of spinal cord central canal +intersection_of: UBERON:0014538 ! subdivision of spinal cord central canal +intersection_of: subdivision_of UBERON:0002792 ! lumbar spinal cord +relationship: subdivision_of UBERON:0002792 ! lumbar spinal cord + +[Term] +id: UBERON:0014544 +name: frontomarginal sulcus +def: "A superficial feature of the human frontal lobe; it is located at the rostral margin of the orbital surface of the lobe (Ono-90). (NN)" [BIRNLEX:4000] +synonym: "FMS" BROAD ABBREVIATION [BIRNLEX:4000, NIFSTD:SumsDB_abbrevSource] +synonym: "fronto marginal sulcus" RELATED [BAMS:frs] +synonym: "frontomarginal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4000] +synonym: "sulcus fronto-marginalis" RELATED LATIN [NeuroNames:1614] +synonym: "sulcus frontomarginalis" RELATED [BIRNLEX:4000] +xref: BAMS:frs +xref: BIRNLEX:4000 +xref: DHBA:146034792 +xref: HBA:9363 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1614 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1614 {source="BIRNLEX:4000"} +xref: http://linkedlifedata.com/resource/umls/id/C0262269 +xref: UMLS:C0262269 {source="BIRNLEX:4000"} +is_a: UBERON:0013118 ! sulcus of brain +relationship: part_of UBERON:0016525 ! frontal lobe + +[Term] +id: UBERON:0014547 +name: sacral division of spinal cord central canal +def: "Part of spinal cord central canal contained in the sacral spinal cord. It is continuous rostrally with the spinal cord central canal of the lumbar cord." [NLXANAT:1010008] +synonym: "lumbosacral spinal cord central canal" RELATED [] +synonym: "sacral spinal cord central canal" EXACT HUMAN_PREFERRED [NLXANAT:1010008] +xref: FMA:321696 +xref: http://www.snomedbrowser.com/Codes/Details/362450003 +xref: NLXANAT:1010008 +is_a: UBERON:0014538 ! subdivision of spinal cord central canal +intersection_of: UBERON:0014538 ! subdivision of spinal cord central canal +intersection_of: subdivision_of UBERON:0005843 ! sacral spinal cord +relationship: subdivision_of UBERON:0005843 ! sacral spinal cord + +[Term] +id: UBERON:0014548 +name: pyramidal layer of CA1 +def: "CA1 part of stratum pyramidale hippocampi" [BIRNLEX:4110] +synonym: "CA1 part of stratum pyramidale hippocampi" EXACT HUMAN_PREFERRED [BIRNLEX:4110] +synonym: "CA1 pyramidal cell layer" RELATED [BIRNLEX:4110] +synonym: "CA1 stratum pyramidale" RELATED [BIRNLEX:4110] +synonym: "CA1 stratum pyramidale hippocampi" EXACT [BIRNLEX:4110] +synonym: "CA1 stratum pyramidale hippocampi" RELATED [BIRNLEX:4110] +synonym: "field CA1, pyramidal layer" EXACT [ABA:CA1sp] +synonym: "stratum pyramidale of CA1" EXACT [PBA:10060] +synonym: "stratum pyramidale of the CA1 field" EXACT [NeuroNames:2940] +xref: BIRNLEX:4110 +xref: DMBA:16133 +xref: EMAPA:35196 +xref: FMA:277868 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2940 +xref: MA:0003186 +xref: MBA:407 +xref: PBA:10060 +is_a: UBERON:0035786 ! layer of CA1 field +intersection_of: UBERON:0035786 ! layer of CA1 field +intersection_of: part_of UBERON:0002313 ! hippocampus pyramidal layer +relationship: immediately_deep_to UBERON:0005372 {source="NN-text"} ! hippocampus stratum radiatum +relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer + +[Term] +id: UBERON:0014549 +name: pyramidal layer of CA2 +def: "Part of pyramidal cell layer in area CA2, lying superficial to the CA2 stratum oriens, and deep to the stratum radiatum of CA2, continuous with the pyramidal cell layers of CA1 and CA3" [BIRNLEX:4111] +synonym: "CA2 part of stratum pyramidale hippocampi" EXACT HUMAN_PREFERRED [BIRNLEX:4111] +synonym: "CA2 stratum pyramidale hippocampi" EXACT [BIRNLEX:4111] +synonym: "field CA2, pyramidal layer" EXACT [ABA:CA2sp] +synonym: "stratum pyramidale of CA2" EXACT [PBA:10065] +synonym: "stratum pyramidale of the CA2 field" EXACT [NeuroNames:2945] +xref: BIRNLEX:4111 +xref: EMAPA:36480 +xref: FMA:277870 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2945 +xref: MBA:446 +xref: PBA:10065 +is_a: UBERON:0035787 ! layer of CA2 field +intersection_of: UBERON:0035787 ! layer of CA2 field +intersection_of: part_of UBERON:0002313 ! hippocampus pyramidal layer +relationship: immediately_deep_to UBERON:0005372 {source="NN-text"} ! hippocampus stratum radiatum +relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer + +[Term] +id: UBERON:0014550 +name: pyramidal layer of CA3 +def: "A layer of hippocampal field that is part of a hippocampus pyramidal layer and is part of a CA3 field of hippocampus." [OBOL:automatic] +synonym: "CA3 part of stratum pyramidale hippocampi" EXACT HUMAN_PREFERRED [BIRNLEX:4112] +synonym: "CA3 stratum pyramidale hippocampi" EXACT [BIRNLEX:4112] +synonym: "field CA3, pyramidal layer" EXACT [ABA:CA3sp] +synonym: "stratum pyramidale of CA3" EXACT [PBA:10070] +synonym: "stratum pyramidale of the CA3 field" EXACT [NeuroNames:2950] +xref: BIRNLEX:4112 +xref: EMAPA:36448 +xref: FMA:277872 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2950 +xref: MBA:495 +xref: PBA:10070 +is_a: UBERON:0035788 ! layer of CA3 field +intersection_of: UBERON:0035788 ! layer of CA3 field +intersection_of: part_of UBERON:0002313 ! hippocampus pyramidal layer +relationship: immediately_deep_to UBERON:0007637 {source="NN-text"} ! hippocampus stratum lucidum +relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer + +[Term] +id: UBERON:0014551 +name: CA2 stratum oriens +def: "Part of stratum oriens lying in area CA2 deep to the CA2 pyramidal cell layer and continuous with stratum oriens of area CA2 and bounded by the dentate gyrus hilus[Modified from NIFSTD by CJM]." [BIRNLEX:4115, UBERON:cjm] +synonym: "CA2 part of stratum oriens" EXACT HUMAN_PREFERRED [BIRNLEX:4115] +synonym: "CA2 stratum oriens" EXACT [BIRNLEX:4115] +synonym: "oriens layer of CA2 field" EXACT [FMA:277858] +synonym: "stratum oriens of the CA2 field" EXACT [NeuroNames:2944] +xref: BAMS:so +xref: BIRNLEX:4115 +xref: DMBA:16138 +xref: FMA:277858 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2944 +xref: MBA:438 +xref: PBA:10064 +is_a: UBERON:0035787 ! layer of CA2 field +intersection_of: UBERON:0035787 ! layer of CA2 field +intersection_of: part_of UBERON:0005371 ! hippocampus stratum oriens +relationship: part_of UBERON:0005371 ! hippocampus stratum oriens + +[Term] +id: UBERON:0014552 +name: CA1 stratum oriens +def: "Part of stratum oriens lying in area CA1, superficial to the alveus of CA1 and deep to the pyramidal cell layer of CA1. It is continuous with the stratum oriens of CA2 and bounded by the subiculum" [BIRNLEX:4116] +synonym: "CA1 part of stratum oriens" EXACT HUMAN_PREFERRED [BIRNLEX:4116] +synonym: "CA1 stratum oriens" EXACT [BIRNLEX:4116] +synonym: "oriens layer of CA1 field" EXACT [FMA:277856] +synonym: "stratum oriens of the CA1 field" EXACT [NeuroNames:2939] +xref: BAMS:so +xref: BIRNLEX:4116 +xref: DMBA:16132 +xref: FMA:277856 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2939 +xref: MBA:399 +xref: PBA:10059 +is_a: UBERON:0035786 ! layer of CA1 field +intersection_of: UBERON:0035786 ! layer of CA1 field +intersection_of: part_of UBERON:0005371 ! hippocampus stratum oriens +relationship: part_of UBERON:0005371 ! hippocampus stratum oriens + +[Term] +id: UBERON:0014553 +name: CA3 stratum oriens +def: "Part of stratum oriens lying in area CA3 deep to the CA3 pyramidal cell layer and continuous with stratum oriens of area CA2 and bounded by the dentate gyrus hilus." [BIRNLEX:4117] +synonym: "CA3 part of stratum oriens" EXACT HUMAN_PREFERRED [BIRNLEX:4117] +synonym: "CA3 stratum oriens" EXACT [BIRNLEX:4117] +synonym: "oriens layer of CA3 field" EXACT [FMA:277860] +synonym: "stratum oriens of the CA3 field" EXACT [NeuroNames:2949] +xref: BAMS:so +xref: BIRNLEX:4117 +xref: DMBA:16142 +xref: FMA:277860 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2949 +xref: MBA:486 +xref: PBA:10069 +is_a: UBERON:0035788 ! layer of CA3 field +intersection_of: UBERON:0035788 ! layer of CA3 field +intersection_of: part_of UBERON:0005371 ! hippocampus stratum oriens +relationship: part_of UBERON:0005371 ! hippocampus stratum oriens + +[Term] +id: UBERON:0014554 +name: CA1 stratum radiatum +def: "Part of stratum radiatum lying in area CA1, superficial to the CA1 pyramidal cell layer and deep to the CA1 stratum lucidum-moleculare, continuous with the stratum radiatum of CA2 and bounded by the subiculum. It contains the Schaffer collateral projection from CA3." [BIRNLEX:4119] +synonym: "CA1 part of stratum radiatum" EXACT HUMAN_PREFERRED [BIRNLEX:4119] +synonym: "CA1 stratum radiatum" EXACT [BIRNLEX:4119] +synonym: "radiate layer of CA1 field" EXACT [FMA:277862] +synonym: "stratum radiatum of the CA1 field" EXACT [NeuroNames:2941] +xref: BAMS:sr +xref: BIRNLEX:4119 +xref: DMBA:16134 +xref: FMA:277862 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2941 +xref: MBA:415 +xref: PBA:10061 +is_a: UBERON:0035786 ! layer of CA1 field +intersection_of: UBERON:0035786 ! layer of CA1 field +intersection_of: part_of UBERON:0005372 ! hippocampus stratum radiatum +relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum + +[Term] +id: UBERON:0014555 +name: CA2 stratum radiatum +def: "Part of stratum radiatum in area CA2, lying superficial to the pyramidal cell layer and deep to CA2 stratum lacunosum-moleculare, continuous with the stratum radiatum of CA1 and CA3." [BIRNLEX:4120] +synonym: "CA2 part of stratum radiatum" EXACT HUMAN_PREFERRED [BIRNLEX:4120] +synonym: "CA2 stratum radiatum" EXACT [BIRNLEX:4120] +synonym: "radiate layer of CA2 field" EXACT [FMA:277864] +synonym: "stratum radiatum of the CA2 field" EXACT [NeuroNames:2946] +xref: BAMS:sr +xref: BIRNLEX:4120 +xref: DMBA:16140 +xref: FMA:277864 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2946 +xref: MBA:454 +xref: PBA:10066 +is_a: UBERON:0035787 ! layer of CA2 field +intersection_of: UBERON:0035787 ! layer of CA2 field +intersection_of: part_of UBERON:0005372 ! hippocampus stratum radiatum +relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum + +[Term] +id: UBERON:0014556 +name: CA3 stratum radiatum +def: "Part of stratum radiatum in area CA3, lying superficial to the stratum lucidum and deep to CA3 stratum lacunosum-moleculare." [BIRNLEX:4121] +synonym: "CA3 part of stratum radiatum" EXACT HUMAN_PREFERRED [BIRNLEX:4121] +synonym: "CA3 stratum radiatum" EXACT [BIRNLEX:4121] +synonym: "radiate layer of CA3 field" EXACT [FMA:277866] +synonym: "stratum radiatum of the CA3 field" EXACT [NeuroNames:2952] +xref: BAMS:sr +xref: BIRNLEX:4121 +xref: DMBA:16145 +xref: FMA:277866 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2952 +xref: MBA:504 +xref: PBA:10072 +is_a: UBERON:0035788 ! layer of CA3 field +intersection_of: UBERON:0035788 ! layer of CA3 field +intersection_of: part_of UBERON:0005372 ! hippocampus stratum radiatum +relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum + +[Term] +id: UBERON:0014557 +name: CA1 stratum lacunosum moleculare +def: "Part of stratum lacunosum-moleculare lying in area CA1, superficial to CA1 stratum radiatum and bounded by the pial surface, continuous with stratum lacunosum-moleculare of CA2 and the subiculum stratum moleculare" [BIRNLEX:4123] +synonym: "CA1 part of stratum lacunosum moleculare" EXACT HUMAN_PREFERRED [BIRNLEX:4123] +synonym: "CA1 stratum lacunosum moleculare" EXACT [BIRNLEX:4123] +synonym: "lacunar-molecular layer of CA1 field" EXACT [FMA:277850] +synonym: "stratum lacunosum moleculare of the CA1 field" EXACT [NeuroNames:2942] +xref: BAMS:slm +xref: BIRNLEX:4123 +xref: DMBA:16135 +xref: FMA:277850 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2942 +xref: MBA:391 +xref: PBA:10062 +is_a: UBERON:0035786 ! layer of CA1 field +intersection_of: UBERON:0035786 ! layer of CA1 field +intersection_of: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare +relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare + +[Term] +id: UBERON:0014558 +name: CA2 stratum lacunosum moleculare +def: "Part of stratum lacunosum-moleculare lying in area CA2, superficial to the CA2 stratum radiatum, that is continuous with the stratum lacunosum-moleculare in areas CA3 and CA1" [BIRNLEX:4124] +synonym: "CA2 part of stratum lacunosum moleculare" EXACT HUMAN_PREFERRED [BIRNLEX:4124] +synonym: "CA2 stratum lacunosum moleculare" EXACT [BIRNLEX:4124] +synonym: "lacunar-molecular layer of CA2 field" EXACT [FMA:277852] +synonym: "stratum lacunosum moleculare of the CA2 field" EXACT [NeuroNames:2947] +xref: BAMS:slm +xref: BIRNLEX:4124 +xref: DMBA:16137 +xref: FMA:277852 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2947 +xref: MBA:431 +xref: PBA:10067 +is_a: UBERON:0035787 ! layer of CA2 field +intersection_of: UBERON:0035787 ! layer of CA2 field +intersection_of: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare +relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare + +[Term] +id: UBERON:0014559 +name: CA3 stratum lacunosum moleculare +def: "Part of stratum lacunosum-moleculare in area CA3. It is bounded by the stratum lacunosum-moleculare of CA2 and CA1. It is bounded superficially by the pial surface and deep by the CA3 stratum radiatum. It is continuous with the stratum lacunosum-moleculare of CA2." [BIRNLEX:4125] +synonym: "CA3 part of stratum lacunosum moleculare" EXACT HUMAN_PREFERRED [BIRNLEX:4125] +synonym: "CA3 stratum lacunosum moleculare" EXACT [BIRNLEX:4125] +synonym: "lacunar-molecular layer of CA3 field" EXACT [FMA:277854] +synonym: "stratum lacunosum moleculare of the CA3 field" EXACT [NeuroNames:2953] +xref: BAMS:slm +xref: BIRNLEX:4125 +xref: DMBA:16146 +xref: FMA:277854 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2953 +xref: MBA:471 +xref: PBA:10073 +is_a: UBERON:0035788 ! layer of CA3 field +intersection_of: UBERON:0035788 ! layer of CA3 field +intersection_of: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare +relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare + +[Term] +id: UBERON:0014560 +name: CA3 stratum lucidum +def: "A layer of hippocampal field that is part of a CA3 field of hippocampus and is part of a hippocampus stratum lucidum." [OBOL:automatic] +synonym: "CA3 stratum lucidum" EXACT [NLXANAT:1005040] +synonym: "stratum lucidum of the CA3 field" EXACT [NeuroNames:2951] +xref: BAMS:slu +xref: DMBA:16144 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2951 +xref: MBA:479 +xref: NLXANAT:1005040 +xref: PBA:10071 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0003883 ! CA3 field of hippocampus +intersection_of: part_of UBERON:0007637 ! hippocampus stratum lucidum +relationship: part_of UBERON:0003883 ! CA3 field of hippocampus +relationship: part_of UBERON:0007637 ! hippocampus stratum lucidum + +[Term] +id: UBERON:0014567 +name: layer of hippocampal field +def: "A subdivision of a layer of the hippocampus (e.g. stratum moleculare) covering all or port of a hippocampal field (e.g. CA1)." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/297] +subset: non_informative +synonym: "hippocampal field layer" EXACT [] +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002305 ! layer of hippocampus + +[Term] +id: UBERON:0014568 +name: dorsal tegmental nucleus pars dorsalis +def: "Part of dorsal tegmental nucleus characterized by round, small cells that are lightly stained in Nissl preparations." [NLXANAT:20090407] +synonym: "dorsal tegmental nucleus of Gudden pars dorsalis" RELATED [NLXANAT:20090407] +synonym: "dorsal tegmental nucleus pars dorsalis" EXACT [NLXANAT:20090407] +xref: NLXANAT:20090407 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0002143 {source="NIFSTD"} ! dorsal tegmental nucleus + +[Term] +id: UBERON:0014569 +name: dorsal tegmental nucleus pars ventralis +def: "Cytoarchitectural part of the dorsal tegmental nucleus based on cell size. The pars ventralis is characterized by medium sized oval or triangular cells that stain darkly in NIssl stains." [NLXANAT:20090408] +synonym: "dorsal tegmental nucleus of Gudden pars ventralis" RELATED [NLXANAT:20090408] +synonym: "dorsal tegmental nucleus pars ventralis" EXACT [NLXANAT:20090408] +synonym: "pars ventralis of the dorsal tegmental nucleus" RELATED [NLXANAT:20090408] +synonym: "pars ventralis of the dorsal tegmental nucleus of Gudden" RELATED [NLXANAT:20090408] +xref: NLXANAT:20090408 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0002143 {source="NIFSTD"} ! dorsal tegmental nucleus + +[Term] +id: UBERON:0014570 +name: CA1 alveus +def: "CA1 portion of the alveus" [NLXANAT:1005038] +synonym: "alveus of the CA1 field" EXACT [NeuroNames:2938] +xref: FMA:277874 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2938 +xref: NLXANAT:1005038 +is_a: UBERON:0035786 ! layer of CA1 field +intersection_of: UBERON:0035786 ! layer of CA1 field +intersection_of: part_of UBERON:0007639 ! hippocampus alveus +relationship: part_of UBERON:0007639 ! hippocampus alveus + +[Term] +id: UBERON:0014571 +name: CA3 alveus +def: "Part of alveus lying within hippocampal sector CA3" [NLXANAT:1005039] +synonym: "alveus of the CA3 field" EXACT [NeuroNames:2948] +xref: FMA:277878 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2948 +xref: NLXANAT:1005039 +is_a: UBERON:0035788 ! layer of CA3 field +intersection_of: UBERON:0035788 ! layer of CA3 field +intersection_of: part_of UBERON:0007639 ! hippocampus alveus +relationship: part_of UBERON:0007639 ! hippocampus alveus + +[Term] +id: UBERON:0014589 +name: anterior nucleus of hypothalamus anterior part +synonym: "AHNa" BROAD ABBREVIATION [BIRNLEX:1109, NIFSTD:Swanson-rat-1998_abbrevSource] +synonym: "anterior hypothalamic nucleus anterior part" RELATED [BAMS:AHNa] +synonym: "anterior hypothalamic nucleus, anterior part" RELATED [BAMS:AHNa] +synonym: "anterior nucleus of hypothalamus anterior part" EXACT HUMAN_PREFERRED [BIRNLEX:1109] +xref: BAMS:AHNa +xref: BIRNLEX:1109 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1903 +xref: MBA:700 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0002634 ! anterior nucleus of hypothalamus + +[Term] +id: UBERON:0014590 +name: anterior nucleus of hypothalamus central part +synonym: "AHNc" BROAD ABBREVIATION [BIRNLEX:1119, NIFSTD:Swanson-rat-1998_abbrevSource] +synonym: "anterior hypothalamic area central part" RELATED [BAMS:AHC] +synonym: "anterior hypothalamic area, central part" RELATED [BAMS:AHC] +synonym: "anterior hypothalamic central part" RELATED [BAMS:AHNc] +synonym: "anterior hypothalamic nucleus central part" RELATED [BAMS:AHNc] +synonym: "anterior hypothalamic nucleus, central part" RELATED [BAMS:AHNc] +synonym: "anterior hypothalamic nucleus, central part" RELATED [BAMS:AHC] +synonym: "anterior nucleus of hypothalamus central part" EXACT HUMAN_PREFERRED [BIRNLEX:1119] +xref: BAMS:AHC +xref: BAMS:AHNc +xref: BIRNLEX:1119 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1932 +xref: MBA:708 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0002634 ! anterior nucleus of hypothalamus + +[Term] +id: UBERON:0014591 +name: anterior nucleus of hypothalamus posterior part +synonym: "AHNp" BROAD ABBREVIATION [BIRNLEX:1125, NIFSTD:Swanson-rat-1998_abbrevSource] +synonym: "anterior hypothalamic nucleus posterior part" RELATED [BAMS:AHNp] +synonym: "anterior hypothalamic nucleus, posterior part" RELATED [BAMS:AHNp] +synonym: "anterior hypothalamic posterior part" RELATED [BAMS:AHNp] +synonym: "anterior nucleus of hypothalamus posterior part" EXACT HUMAN_PREFERRED [BIRNLEX:1125] +xref: BAMS:AHNp +xref: BIRNLEX:1125 +xref: DMBA:16240 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1930 +xref: MBA:724 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0002634 ! anterior nucleus of hypothalamus + +[Term] +id: UBERON:0014592 +name: anterior nucleus of hypothalamus dorsal part +synonym: "AHNd" BROAD ABBREVIATION [BIRNLEX:1139, NIFSTD:Swanson-rat-1998_abbrevSource] +synonym: "anterior hypothalamic dorsal part" RELATED [BAMS:AHNd] +synonym: "anterior hypothalamic nucleus dorsal part" RELATED [BAMS:AHNd] +synonym: "anterior hypothalamic nucleus, dorsal part" RELATED [BAMS:AHNd] +synonym: "anterior hypothalamic nucleus, dorsal part" RELATED [BAMS:AHD] +synonym: "anterior nucleus of hypothalamus dorsal part" EXACT HUMAN_PREFERRED [BIRNLEX:1139] +xref: BAMS:AHD +xref: BAMS:AHNd +xref: BIRNLEX:1139 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1929 +xref: MBA:716 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0002634 ! anterior nucleus of hypothalamus + +[Term] +id: UBERON:0014593 +name: tuberomammillary nucleus dorsal part +synonym: "TMd" BROAD ABBREVIATION [BIRNLEX:1290, NIFSTD:Swanson-rat-1998_abbrevSource] +synonym: "tuberomammillary nucleus dorsal part" EXACT HUMAN_PREFERRED [BIRNLEX:1290] +synonym: "tuberomammillary nucleus, dorsal part" RELATED [BAMS:TMd] +xref: BAMS:TMd +xref: BIRNLEX:1290 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1881 +xref: MBA:1126 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0001936 {source="NIFSTD"} ! tuberomammillary nucleus + +[Term] +id: UBERON:0014594 +name: tuberomammillary nucleus ventral part +synonym: "TMv" BROAD ABBREVIATION [BIRNLEX:1294, NIFSTD:Swanson-rat-1998_abbrevSource] +synonym: "tuberomammillary nucleus ventral part" EXACT HUMAN_PREFERRED [BIRNLEX:1294] +xref: BAMS:TMv +xref: BIRNLEX:1294 +xref: MBA:1 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0001936 {source="NIFSTD"} ! tuberomammillary nucleus + +[Term] +id: UBERON:0014595 +name: paraventricular nucleus of the hypothalamus descending division - medial parvicellular part, ventral zone +synonym: "paraventricular hypothalamic nucleus medial parvicellular part, ventral zone" RELATED [BAMS:PVHmpv] +synonym: "paraventricular hypothalamic nucleus, descending division, medial parvicellular part, ventral zone" RELATED [BAMS:PVHmpv] +synonym: "paraventricular nucleus of the hypothalamus descending division - medial parvicellular part, ventral zone" EXACT HUMAN_PREFERRED [BIRNLEX:1342] +synonym: "paraventricular nucleus of the hypothalamus, descending division, medial parvicellular part, ventral zone" RELATED [BAMS:PVHmpv] +synonym: "PVHmpv" BROAD ABBREVIATION [BIRNLEX:1342, NIFSTD:Swanson-rat-1998_abbrevSource] +xref: BAMS:PVHmpv +xref: BIRNLEX:1342 +xref: HBA:4576 +xref: MBA:464 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0014602 ! paraventricular nucleus of the hypothalamus descending division + +[Term] +id: UBERON:0014596 +name: paraventricular nucleus of the hypothalamus descending division - dorsal parvicellular part +synonym: "paraventricular hypothalamic nucleus dorsal parvicellular part" RELATED [BAMS:PVHdp] +synonym: "paraventricular hypothalamic nucleus, descending division, dorsal parvicellular part" RELATED [BAMS:PVHdp] +synonym: "paraventricular nucleus of the hypothalamus descending division - dorsal parvicellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1348] +synonym: "paraventricular nucleus of the hypothalamus, descending division, dorsal parvicellular part" RELATED [BAMS:PVHdp] +synonym: "PVHdp" BROAD ABBREVIATION [BIRNLEX:1348, NIFSTD:Swanson-rat-1998_abbrevSource] +xref: BAMS:PVHdp +xref: BIRNLEX:1348 +xref: HBA:4577 +xref: MBA:439 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0014602 ! paraventricular nucleus of the hypothalamus descending division + +[Term] +id: UBERON:0014597 +name: paraventricular nucleus of the hypothalamus descending division - lateral parvicellular part +synonym: "paraventricular hypothalamic nucleus lateral parvicellular part" RELATED [BAMS:PVHlp] +synonym: "paraventricular hypothalamic nucleus, descending division, lateral parvicellular part" RELATED [BAMS:PVHlp] +synonym: "paraventricular nucleus of the hypothalamus descending division - lateral parvicellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1354] +synonym: "paraventricular nucleus of the hypothalamus, descending division, lateral parvicellular part" RELATED [BAMS:PVHlp] +synonym: "PVHlp" BROAD ABBREVIATION [BIRNLEX:1354, NIFSTD:Swanson-rat-1998_abbrevSource] +xref: BAMS:PVHlp +xref: BIRNLEX:1354 +xref: HBA:4578 +xref: MBA:455 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0014602 ! paraventricular nucleus of the hypothalamus descending division + +[Term] +id: UBERON:0014598 +name: paraventricular nucleus of the hypothalamus descending division - forniceal part +synonym: "paraventricular hypothalamic nucleus forniceal part" RELATED [BAMS:PVHf] +synonym: "paraventricular hypothalamic nucleus, descending division, forniceal part" RELATED [BAMS:PVHf] +synonym: "paraventricular nucleus of the hypothalamus descending division - forniceal part" EXACT HUMAN_PREFERRED [BIRNLEX:1374] +synonym: "paraventricular nucleus of the hypothalamus, descending division, forniceal part" RELATED [BAMS:PVHf] +synonym: "paraventricular nucleus of the hypothalamus, parvicellular division forniceal part" RELATED [BAMS:PVHf] +synonym: "PVHf" BROAD ABBREVIATION [BIRNLEX:1374, NIFSTD:Swanson-rat-1998_abbrevSource] +xref: BAMS:PVHf +xref: BIRNLEX:1374 +xref: HBA:4579 +xref: MBA:447 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0014602 ! paraventricular nucleus of the hypothalamus descending division + +[Term] +id: UBERON:0014599 +name: paraventricular nucleus of the hypothalamus magnocellular division - anterior magnocellular part +synonym: "paraventricular hypothalamic nucleus anterior magnocellular part" RELATED [BAMS:PVHam] +synonym: "paraventricular hypothalamic nucleus, magnocellular division, anterior magnocellular part" RELATED [BAMS:PVHam] +synonym: "paraventricular nucleus of the hypothalamus magnocellular division - anterior magnocellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1384] +synonym: "paraventricular nucleus of the hypothalamus, magnocellular division, anterior magnocellular part" RELATED [BAMS:PVHam] +synonym: "PVHam" BROAD ABBREVIATION [BIRNLEX:1384, NIFSTD:Swanson-rat-1998_abbrevSource] +xref: BAMS:PVHam +xref: BIRNLEX:1384 +xref: HBA:4581 +xref: MBA:47 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0014603 ! paraventricular nucleus of the hypothalamus magnocellular division + +[Term] +id: UBERON:0014600 +name: paraventricular nucleus of the hypothalamus magnocellular division - medial magnocellular part +synonym: "paraventricular hypothalamic nucleus medial magnocellular part" RELATED [BAMS:PVHmm] +synonym: "paraventricular hypothalamic nucleus, magnocellular division, medial magnocellular part" RELATED [BAMS:PVHmm] +synonym: "paraventricular nucleus of the hypothalamus magnocellular division - medial magnocellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1388] +synonym: "paraventricular nucleus of the hypothalamus, magnocellular division, medial magnocellular part" RELATED [BAMS:PVHmm] +synonym: "PVHmm" BROAD ABBREVIATION [BIRNLEX:1388, NIFSTD:Swanson-rat-1998_abbrevSource] +xref: BAMS:PVHmm +xref: BIRNLEX:1388 +xref: HBA:4582 +xref: MBA:79 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0014603 ! paraventricular nucleus of the hypothalamus magnocellular division + +[Term] +id: UBERON:0014601 +name: paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part +synonym: "paraventricular hypothalamic nucleus posterior magnocellular part" RELATED [BAMS:PVHpm] +synonym: "paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part" RELATED [BAMS:PVHpm] +synonym: "paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1394] +synonym: "paraventricular nucleus of the hypothalamus, magnocellular division, posterior magnocellular part" RELATED [BAMS:PVHpm] +synonym: "PVHpm" BROAD ABBREVIATION [BIRNLEX:1394, NIFSTD:Swanson-rat-1998_abbrevSource] +xref: BAMS:PVHpm +xref: BIRNLEX:1394 +xref: HBA:4583 +xref: MBA:103 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0014603 ! paraventricular nucleus of the hypothalamus magnocellular division + +[Term] +id: UBERON:0014602 +name: paraventricular nucleus of the hypothalamus descending division +synonym: "paraventricular hypothalamic nucleus, descending division" RELATED [BAMS:PVHd] +synonym: "paraventricular nucleus of the hypothalamus descending division" EXACT HUMAN_PREFERRED [BIRNLEX:1413] +synonym: "paraventricular nucleus of the hypothalamus, descending division" RELATED [BAMS:PVHd] +synonym: "PVHd" BROAD ABBREVIATION [BIRNLEX:1413, NIFSTD:Swanson-rat-1992_abbrevSource] +xref: BAMS:PVHd +xref: BIRNLEX:1413 +xref: DHBA:10477 +xref: HBA:4575 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3229 +xref: MBA:63 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0001930 ! paraventricular nucleus of hypothalamus + +[Term] +id: UBERON:0014603 +name: paraventricular nucleus of the hypothalamus magnocellular division +synonym: "paraventricular hypothalamic nucleus magnocellular division" RELATED [BAMS:PVHm] +synonym: "paraventricular hypothalamic nucleus, magnocellular division" RELATED [BAMS:PVHm] +synonym: "paraventricular nucleus of the hypothalamus magnocellular division" EXACT HUMAN_PREFERRED [BIRNLEX:1419] +synonym: "paraventricular nucleus of the hypothalamus, magnocellular division" RELATED [BAMS:PVHm] +synonym: "PVHm" BROAD ABBREVIATION [BIRNLEX:1419, NIFSTD:Swanson-rat-1992_abbrevSource] +xref: BAMS:PVHm +xref: BIRNLEX:1419 +xref: DHBA:10478 +xref: HBA:4580 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3230 +xref: MBA:71 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0001930 ! paraventricular nucleus of hypothalamus + +[Term] +id: UBERON:0014604 +name: paraventricular nucleus of the hypothalamus parvicellular division +synonym: "paraventricular hypothalamic nucleus parvicellular division" RELATED [BAMS:PVHp] +synonym: "paraventricular hypothalamic nucleus, parvicellular division" RELATED [BAMS:PVHp] +synonym: "paraventricular nucleus of the hypothalamus parvicellular division" EXACT HUMAN_PREFERRED [BIRNLEX:1426] +synonym: "paraventricular nucleus of the hypothalamus, parvicellular division" RELATED [BAMS:PVHp] +synonym: "PVHp" BROAD ABBREVIATION [BIRNLEX:1426, NIFSTD:Swanson-rat-1992_abbrevSource] +xref: BAMS:PVHp +xref: BIRNLEX:1426 +xref: DHBA:10479 +xref: HBA:4586 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3231 +xref: MBA:94 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0001930 ! paraventricular nucleus of hypothalamus + +[Term] +id: UBERON:0014605 +name: fundus striati +def: "The ventral portion of the dorsal striatum, linking the caudate nucleus and the putamen anteriorly (adapted from Wikipedia)" [NLX:144261] +synonym: "fundus of striatum" RELATED [BAMS:FS] +synonym: "fundus of the striatum" RELATED [NLX:144261] +synonym: "fundus striati" EXACT [NLX:144261] +synonym: "striatal fundus" RELATED [NLX:144261] +xref: BAMS:FS +xref: BAMS:FStr +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1784 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2158 +xref: MBA:998 +xref: NLX:144261 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0005403 {source="ABA"} ! ventral striatum + +[Term] +id: UBERON:0014607 +name: thoracic spinal cord lateral horn +def: "A spinal cord lateral horn that is part of a thoracic spinal cord." [OBOL:automatic] +synonym: "thoracic spinal cord intermediate horn" RELATED [BIRNLEX:1397] +synonym: "thoracic spinal cord lateral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1397] +xref: BIRNLEX:1397 +xref: http://linkedlifedata.com/resource/umls/id/C0228631 +xref: http://linkedlifedata.com/resource/umls/id/C1288551 +xref: http://www.snomedbrowser.com/Codes/Details/367875001 +xref: UMLS:C0228631 {source="BIRNLEX:1397"} +xref: UMLS:C1288551 {source="BIRNLEX:1397"} +is_a: UBERON:0004676 ! spinal cord lateral horn +intersection_of: UBERON:0004676 ! spinal cord lateral horn +intersection_of: part_of UBERON:0003038 ! thoracic spinal cord +relationship: part_of UBERON:0003038 ! thoracic spinal cord + +[Term] +id: UBERON:0014608 +name: inferior occipital gyrus +synonym: "gyrus occipitalis inferior" RELATED LATIN [NeuroNames:156] +synonym: "gyrus occipitalis tertius" RELATED LATIN [NeuroNames:156] +synonym: "inferior occipital gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1399] +xref: BAMS:IOG +xref: BAMS:O3 +xref: BIRNLEX:1399 +xref: DHBA:12153 +xref: FMA:273129 +xref: HBA:4205 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=156 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=156 {source="BIRNLEX:1399"} +xref: http://linkedlifedata.com/resource/umls/id/C1110643 +xref: http://www.snomedbrowser.com/Codes/Details/279183001 +xref: UMLS:C1110643 {source="BIRNLEX:1399"} +is_a: UBERON:0014640 ! occipital gyrus + +[Term] +id: UBERON:0014609 +name: thoracic spinal cord dorsal horn +def: "A dorsal horn of spinal cord that is part of a thoracic spinal cord." [OBOL:automatic] +synonym: "thoracic spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1404] +synonym: "thoracic spinal cord posterior horn" RELATED [BIRNLEX:1404] +xref: BIRNLEX:1404 +xref: http://linkedlifedata.com/resource/umls/id/C0228628 +xref: http://www.snomedbrowser.com/Codes/Details/362442007 +xref: UMLS:C0228628 {source="BIRNLEX:1404"} +is_a: UBERON:0002256 ! dorsal horn of spinal cord +intersection_of: UBERON:0002256 ! dorsal horn of spinal cord +intersection_of: part_of UBERON:0003038 ! thoracic spinal cord +relationship: part_of UBERON:0003038 ! thoracic spinal cord + +[Term] +id: UBERON:0014610 +name: thoracic spinal cord ventral horn +def: "A ventral horn of spinal cord that is part of a thoracic spinal cord." [OBOL:automatic] +synonym: "thoracic spinal cord anterior horn" RELATED [BIRNLEX:1410] +synonym: "thoracic spinal cord ventral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1410] +xref: BIRNLEX:1410 +xref: http://linkedlifedata.com/resource/umls/id/C0228632 +xref: http://linkedlifedata.com/resource/umls/id/C1288552 +xref: http://www.snomedbrowser.com/Codes/Details/367876000 +xref: UMLS:C0228632 {source="BIRNLEX:1410"} +xref: UMLS:C1288552 {source="BIRNLEX:1410"} +is_a: UBERON:0002257 ! ventral horn of spinal cord +intersection_of: UBERON:0002257 ! ventral horn of spinal cord +intersection_of: part_of UBERON:0003038 ! thoracic spinal cord +relationship: part_of UBERON:0003038 ! thoracic spinal cord + +[Term] +id: UBERON:0014611 +name: apex of thoracic spinal cord dorsal horn +synonym: "apex of thoracic spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1427] +synonym: "apex of thoracic spinal cord posterior horn" RELATED [BIRNLEX:1427] +xref: BIRNLEX:1427 +xref: http://linkedlifedata.com/resource/umls/id/C0228629 +xref: http://www.snomedbrowser.com/Codes/Details/367877009 +xref: UMLS:C0228629 {source="BIRNLEX:1427"} +is_a: UBERON:0006983 ! anatomical point +relationship: part_of UBERON:0014609 ! thoracic spinal cord dorsal horn + +[Term] +id: UBERON:0014612 +name: substantia gelatinosa of thoracic spinal cord dorsal horn +def: "Substantia gelatinosa of thoracic spinal cord posterior horn" [BIRNLEX:1432] +synonym: "substantia gelatinosa of thoracic spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1432] +synonym: "substantia gelatinosa of thoracic spinal cord posterior horn" RELATED [BIRNLEX:1432] +xref: BIRNLEX:1432 +xref: http://linkedlifedata.com/resource/umls/id/C0228630 +xref: http://linkedlifedata.com/resource/umls/id/C1288554 +xref: http://www.snomedbrowser.com/Codes/Details/367878004 +xref: UMLS:C0228630 {source="BIRNLEX:1432"} +xref: UMLS:C1288554 {source="BIRNLEX:1432"} +is_a: UBERON:0002181 ! substantia gelatinosa +intersection_of: UBERON:0002181 ! substantia gelatinosa +intersection_of: part_of UBERON:0014609 ! thoracic spinal cord dorsal horn +relationship: part_of UBERON:0014609 ! thoracic spinal cord dorsal horn + +[Term] +id: UBERON:0014613 +name: cervical spinal cord gray matter +def: "A gray matter of spinal cord that is part of a cervical spinal cord." [OBOL:automatic] +synonym: "cervical spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:1521] +xref: BIRNLEX:1521 +xref: http://linkedlifedata.com/resource/umls/id/C0228610 +xref: http://www.snomedbrowser.com/Codes/Details/362438009 +xref: UMLS:C0228610 {source="BIRNLEX:1521"} +is_a: UBERON:0002315 ! gray matter of spinal cord +intersection_of: UBERON:0002315 ! gray matter of spinal cord +intersection_of: part_of UBERON:0002726 ! cervical spinal cord +relationship: part_of UBERON:0002726 ! cervical spinal cord + +[Term] +id: UBERON:0014614 +name: cervical spinal cord white matter +def: "A white matter of spinal cord that is part of a cervical spinal cord." [OBOL:automatic] +synonym: "cervical spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:1531] +xref: BIRNLEX:1531 +xref: http://linkedlifedata.com/resource/umls/id/C0228616 +xref: http://www.snomedbrowser.com/Codes/Details/174829001 +xref: UMLS:C0228616 {source="BIRNLEX:1531"} +is_a: UBERON:0002318 ! white matter of spinal cord +intersection_of: UBERON:0002318 ! white matter of spinal cord +intersection_of: part_of UBERON:0002726 ! cervical spinal cord +relationship: part_of UBERON:0002726 ! cervical spinal cord + +[Term] +id: UBERON:0014615 +name: accessory nerve root +def: "A nerve root that is part of a accessory XI nerve." [OBOL:automatic] +synonym: "accessory nerve root" EXACT HUMAN_PREFERRED [BIRNLEX:1580] +synonym: "accessory portion of spinal accessory nerve" RELATED [NeuroNames:703] +synonym: "bulbar accessory nerve" RELATED [NeuroNames:703] +synonym: "bulbar part of accessory nerve" RELATED [NeuroNames:703] +synonym: "c11n" BROAD ABBREVIATION [BIRNLEX:1580, NIFSTD:NeuroNames_abbrevSource] +synonym: "cranial accessory nerve" RELATED [NeuroNames:703] +synonym: "cranial part of accessory nerve" RELATED [BAMS:c11n] +synonym: "cranial part of the accessory nerve" RELATED [NeuroNames:703] +synonym: "cranial portion of eleventh cranial nerve" RELATED [NeuroNames:703] +synonym: "internal branch of accessory nerve" RELATED [NeuroNames:703] +synonym: "nerve XI (cranialis)" RELATED [NeuroNames:703] +synonym: "pars vagalis of nervus accessorius" RELATED LATIN [NeuroNames:703] +synonym: "radices craniales nervi accessorii" RELATED LATIN [NeuroNames:703] +synonym: "root of accessory nerve" EXACT [] +xref: BAMS:c11n +xref: BIRNLEX:1580 +xref: DHBA:12883 +xref: DMBA:17749 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=703 {source="BIRNLEX:1580"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=703 +xref: http://en.wikipedia.org/wiki/Cranial_root_of_accessory_nerves +xref: http://www.snomedbrowser.com/Codes/Details/280187004 +is_a: UBERON:0002211 ! nerve root +intersection_of: UBERON:0002211 ! nerve root +intersection_of: extends_fibers_into UBERON:0002019 ! accessory XI nerve +relationship: extends_fibers_into UBERON:0002019 ! accessory XI nerve + +[Term] +id: UBERON:0014616 +name: dorsal nerve root of thoracic spinal cord +synonym: "dorsal nerve root of thoracic spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1601] +synonym: "posterior nerve root of thoracic spinal cord" RELATED [BIRNLEX:1601] +xref: BIRNLEX:1601 +xref: http://linkedlifedata.com/resource/umls/id/C1288559 +xref: http://www.snomedbrowser.com/Codes/Details/367883007 +xref: UMLS:C1288559 {source="BIRNLEX:1601"} +is_a: UBERON:0009630 {source="NIFSTD"} ! root of thoracic nerve + +[Term] +id: UBERON:0014617 +name: ventral nerve root of thoracic spinal cord +synonym: "anterior nerve root of thoracic spinal cord" RELATED [BIRNLEX:1606] +synonym: "ventral nerve root of thoracic spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1606] +xref: BIRNLEX:1606 +xref: http://linkedlifedata.com/resource/umls/id/C0228639 +xref: http://www.snomedbrowser.com/Codes/Details/367882002 +xref: UMLS:C0228639 {source="BIRNLEX:1606"} +is_a: UBERON:0009630 {source="NIFSTD"} ! root of thoracic nerve + +[Term] +id: UBERON:0014618 +name: middle frontal sulcus +synonym: "intermediate frontal sulcus" RELATED [NeuroNames:62] +synonym: "MFS" BROAD ABBREVIATION [BIRNLEX:1650, NIFSTD:NeuroNames_abbrevSource] +synonym: "middle frontal fissure" RELATED [BIRNLEX:1650] +synonym: "middle frontal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1650] +synonym: "sulcus F3" RELATED [BIRNLEX:1650] +synonym: "sulcus frontalis intermedius" RELATED LATIN [NeuroNames:62] +synonym: "sulcus frontalis medius" RELATED [BIRNLEX:1650] +synonym: "sulcus frontalis medius (Eberstaller)" RELATED LATIN [NeuroNames:62] +xref: BAMS:mfs +xref: BIRNLEX:1650 +xref: DHBA:146034816 +xref: HBA:9359 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=62 {source="BIRNLEX:1650"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=62 +xref: http://linkedlifedata.com/resource/umls/id/C0228199 +xref: http://www.snomedbrowser.com/Codes/Details/369227007 +xref: UMLS:C0228199 {source="BIRNLEX:1650"} +is_a: UBERON:0014639 ! frontal sulcus + +[Term] +id: UBERON:0014619 +name: cervical spinal cord lateral horn +def: "A spinal cord lateral horn that is part of a cervical spinal cord." [OBOL:automatic] +synonym: "cervical spinal cord intermediate horn" RELATED [BIRNLEX:1665] +synonym: "cervical spinal cord lateral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1665] +xref: BIRNLEX:1665 +xref: http://linkedlifedata.com/resource/umls/id/C0228614 +xref: http://linkedlifedata.com/resource/umls/id/C1278739 +xref: http://www.snomedbrowser.com/Codes/Details/174268004 +xref: UMLS:C0228614 {source="BIRNLEX:1665"} +xref: UMLS:C1278739 {source="BIRNLEX:1665"} +is_a: UBERON:0004676 ! spinal cord lateral horn +intersection_of: UBERON:0004676 ! spinal cord lateral horn +intersection_of: part_of UBERON:0002726 ! cervical spinal cord +disjoint_from: UBERON:0029626 {source="NIFSTD"} ! cervical spinal cord gray commissure +relationship: part_of UBERON:0002726 ! cervical spinal cord + +[Term] +id: UBERON:0014620 +name: cervical spinal cord dorsal horn +def: "A dorsal horn of spinal cord that is part of a cervical spinal cord." [OBOL:automatic] +synonym: "cervical spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1673] +synonym: "cervical spinal cord posterior horn" RELATED [BIRNLEX:1673] +xref: BIRNLEX:1673 +xref: http://linkedlifedata.com/resource/umls/id/C0228611 +xref: http://www.snomedbrowser.com/Codes/Details/362439001 +xref: UMLS:C0228611 {source="BIRNLEX:1673"} +is_a: UBERON:0002256 ! dorsal horn of spinal cord +intersection_of: UBERON:0002256 ! dorsal horn of spinal cord +intersection_of: part_of UBERON:0002726 ! cervical spinal cord +disjoint_from: UBERON:0029626 {source="NIFSTD"} ! cervical spinal cord gray commissure +relationship: part_of UBERON:0002726 ! cervical spinal cord + +[Term] +id: UBERON:0014621 +name: cervical spinal cord ventral horn +def: "A ventral horn of spinal cord that is part of a cervical spinal cord." [OBOL:automatic] +synonym: "cervical spinal cord anterior horn" RELATED [BIRNLEX:1680] +synonym: "cervical spinal cord ventral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1680] +xref: BIRNLEX:1680 +xref: http://linkedlifedata.com/resource/umls/id/C0228615 +xref: http://linkedlifedata.com/resource/umls/id/C1278740 +xref: http://www.snomedbrowser.com/Codes/Details/174363005 +xref: UMLS:C0228615 {source="BIRNLEX:1680"} +xref: UMLS:C1278740 {source="BIRNLEX:1680"} +is_a: UBERON:0002257 ! ventral horn of spinal cord +intersection_of: UBERON:0002257 ! ventral horn of spinal cord +intersection_of: part_of UBERON:0002726 ! cervical spinal cord +disjoint_from: UBERON:0029626 {source="NIFSTD"} ! cervical spinal cord gray commissure +relationship: part_of UBERON:0002726 ! cervical spinal cord + +[Term] +id: UBERON:0014622 +name: apex of cervical spinal cord dorsal horn +synonym: "apex of cervical spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1714] +synonym: "apex of cervical spinal cord posterior horn" RELATED [BIRNLEX:1714] +xref: BIRNLEX:1714 +xref: http://linkedlifedata.com/resource/umls/id/C0228612 +xref: http://www.snomedbrowser.com/Codes/Details/174452008 +xref: UMLS:C0228612 {source="BIRNLEX:1714"} +is_a: UBERON:0006983 ! anatomical point +relationship: part_of UBERON:0014620 ! cervical spinal cord dorsal horn + +[Term] +id: UBERON:0014623 +name: substantia gelatinosa of cervical spinal cord dorsal horn +def: "A substantia gelatinosa that is part of a cervical spinal cord dorsal horn." [OBOL:automatic] +synonym: "substantia gelatinosa of cervical spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1723] +synonym: "substantia gelatinosa of cervical spinal cord posterior horn" RELATED [BIRNLEX:1723] +xref: BIRNLEX:1723 +xref: http://linkedlifedata.com/resource/umls/id/C0228613 +xref: http://www.snomedbrowser.com/Codes/Details/174544008 +xref: UMLS:C0228613 {source="BIRNLEX:1723"} +is_a: UBERON:0002181 ! substantia gelatinosa +intersection_of: UBERON:0002181 ! substantia gelatinosa +intersection_of: part_of UBERON:0014620 ! cervical spinal cord dorsal horn +relationship: part_of UBERON:0014620 ! cervical spinal cord dorsal horn + +[Term] +id: UBERON:0014624 +name: basis modioli +synonym: "base of modiolus cochleae" EXACT [FMA:75640] +synonym: "base of modiolus of cochlea" RELATED [BIRNLEX:2522] +synonym: "basis cochleae" EXACT LATIN [FMA:75640, FMA:TA] +synonym: "basis modioli" EXACT HUMAN_PREFERRED [BIRNLEX:2522] +xref: BIRNLEX:2522 +xref: FMA:75640 +xref: http://linkedlifedata.com/resource/umls/id/C0458781 +xref: http://www.snomedbrowser.com/Codes/Details/279799003 +xref: UMLS:C0458781 {source="BIRNLEX:2522"} +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0006723 ! cochlear modiolus + +[Term] +id: UBERON:0014626 +name: base of cochlear canal +synonym: "base of the cochlear canal" EXACT HUMAN_PREFERRED [BIRNLEX:2556] +xref: BIRNLEX:2556 +xref: http://linkedlifedata.com/resource/umls/id/C0458766 +xref: http://www.snomedbrowser.com/Codes/Details/279778001 +xref: UMLS:C0458766 {source="BIRNLEX:2556"} +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0006106 ! cochlear canal + +[Term] +id: UBERON:0014628 +name: vestibular fissure of the cochlear canal +synonym: "vestibular fissure of the cochlear canal" EXACT HUMAN_PREFERRED [BIRNLEX:2558] +xref: BIRNLEX:2558 +xref: http://linkedlifedata.com/resource/umls/id/C0458761 +xref: http://www.snomedbrowser.com/Codes/Details/279772000 +xref: UMLS:C0458761 {source="BIRNLEX:2558"} +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0006106 ! cochlear canal + +[Term] +id: UBERON:0014629 +name: terminal part of the cochlear canal +synonym: "terminal part of the cochlear canal" EXACT HUMAN_PREFERRED [BIRNLEX:2559] +xref: BIRNLEX:2559 +xref: http://linkedlifedata.com/resource/umls/id/C0458768 +xref: http://www.snomedbrowser.com/Codes/Details/279780007 +xref: UMLS:C0458768 {source="BIRNLEX:2559"} +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0006106 ! cochlear canal + +[Term] +id: UBERON:0014630 +name: ventral gray commissure of spinal cord +synonym: "anterior grey commissure of spinal cord" EXACT [FMA:77038] +synonym: "commissura grisea anterior medullae spinalis" EXACT [FMA:TA] +synonym: "spinal cord anterior gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:2676] +synonym: "ventral grey commissure of spinal cord" EXACT [FMA:77038] +xref: BIRNLEX:2676 +xref: FMA:77038 +xref: http://linkedlifedata.com/resource/umls/id/C0228572 +xref: http://www.snomedbrowser.com/Codes/Details/88806005 +xref: UMLS:C0228572 {source="BIRNLEX:2676"} +is_a: UBERON:0002315 ! gray matter of spinal cord +disjoint_from: UBERON:0014631 {source="lexical"} ! dorsal gray commissure of spinal cord +relationship: part_of UBERON:0004677 {source="FMA"} ! spinal cord gray commissure + +[Term] +id: UBERON:0014631 +name: dorsal gray commissure of spinal cord +def: "the part of the gray commissure in the spinal central gray posterior to the central canal of the spinal cord" [NeuroNames:2017] +synonym: "commissura grisea posterior medullae spinalis" EXACT [FMA:TA] +synonym: "dorsal gray commissure" EXACT [NeuroNames:2017] +synonym: "dorsal grey commissure of spinal cord" EXACT [FMA:77037] +synonym: "posterior grey commissure of spinal cord" EXACT [FMA:77037] +synonym: "spinal cord posterior gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:2677] +xref: BIRNLEX:2677 +xref: FMA:77037 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2017 +xref: http://linkedlifedata.com/resource/umls/id/C0228573 +xref: http://www.snomedbrowser.com/Codes/Details/21169000 +xref: UMLS:C0228573 {source="BIRNLEX:2677"} +is_a: UBERON:0002315 ! gray matter of spinal cord +relationship: part_of UBERON:0004677 {source="FMA"} ! spinal cord gray commissure + +[Term] +id: UBERON:0014632 +name: apex of lumbar spinal cord dorsal horn +synonym: "apex of lumbar spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:811] +synonym: "apex of lumbar spinal cord posterior horn" RELATED [BIRNLEX:811] +xref: BIRNLEX:811 +xref: http://linkedlifedata.com/resource/umls/id/C0228647 +xref: http://www.snomedbrowser.com/Codes/Details/314425003 +xref: UMLS:C0228647 {source="BIRNLEX:811"} +is_a: UBERON:0006983 ! anatomical point +relationship: part_of UBERON:0014638 ! lumbar spinal cord dorsal horn + +[Term] +id: UBERON:0014633 +name: substantia gelatinosa of lumbar spinal cord dorsal horn +def: "A substantia gelatinosa that is part of a lumbar spinal cord dorsal horn." [OBOL:automatic] +synonym: "substantia gelatinosa of lumbar spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:819] +synonym: "substantia gelatinosa of lumbar spinal cord posterior horn" RELATED [BIRNLEX:819] +xref: BIRNLEX:819 +xref: http://linkedlifedata.com/resource/umls/id/C0228648 +xref: http://linkedlifedata.com/resource/umls/id/C1282211 +xref: http://www.snomedbrowser.com/Codes/Details/314519000 +xref: UMLS:C0228648 {source="BIRNLEX:819"} +xref: UMLS:C1282211 {source="BIRNLEX:819"} +is_a: UBERON:0002181 ! substantia gelatinosa +intersection_of: UBERON:0002181 ! substantia gelatinosa +intersection_of: part_of UBERON:0014638 ! lumbar spinal cord dorsal horn +relationship: part_of UBERON:0014638 ! lumbar spinal cord dorsal horn + +[Term] +id: UBERON:0014634 +name: ventral nerve root of cervical spinal cord +def: "A ventral root of spinal cord that overlaps a cervical spinal cord." [OBOL:automatic] +synonym: "anterior nerve root of cervical spinal cord" RELATED [BIRNLEX:958] +synonym: "ventral nerve root of cervical spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:958] +xref: BIRNLEX:958 +xref: http://linkedlifedata.com/resource/umls/id/C1278750 +xref: http://www.snomedbrowser.com/Codes/Details/174925008 +xref: UMLS:C1278750 {source="BIRNLEX:958"} +is_a: UBERON:0002260 ! ventral root of spinal cord +is_a: UBERON:0009632 {source="NIFSTD"} ! root of cervical nerve + +[Term] +id: UBERON:0014635 +name: dorsal nerve root of cervical spinal cord +def: "A dorsal root of spinal cord that overlaps a cervical spinal cord." [OBOL:automatic] +synonym: "dorsal nerve root of cervical spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:964] +synonym: "posterior nerve root of cervical spinal cord" RELATED [BIRNLEX:964] +xref: BIRNLEX:964 +xref: http://linkedlifedata.com/resource/umls/id/C1278751 +xref: http://www.snomedbrowser.com/Codes/Details/175023008 +xref: UMLS:C1278751 {source="BIRNLEX:964"} +is_a: UBERON:0002261 ! dorsal root of spinal cord +is_a: UBERON:0009632 {source="NIFSTD"} ! root of cervical nerve + +[Term] +id: UBERON:0014636 +name: thoracic spinal cord gray matter +def: "A gray matter of spinal cord that is part of a thoracic spinal cord." [OBOL:automatic] +synonym: "thoracic spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:980] +xref: BIRNLEX:980 +xref: http://linkedlifedata.com/resource/umls/id/C0228627 +xref: http://www.snomedbrowser.com/Codes/Details/362441000 +xref: UMLS:C0228627 {source="BIRNLEX:980"} +is_a: UBERON:0002315 ! gray matter of spinal cord +intersection_of: UBERON:0002315 ! gray matter of spinal cord +intersection_of: part_of UBERON:0003038 ! thoracic spinal cord +relationship: part_of UBERON:0003038 ! thoracic spinal cord + +[Term] +id: UBERON:0014637 +name: thoracic spinal cord white matter +def: "A white matter of spinal cord that is part of a thoracic spinal cord." [OBOL:automatic] +synonym: "thoracic spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:999] +xref: BIRNLEX:999 +xref: http://linkedlifedata.com/resource/umls/id/C0228633 +xref: http://linkedlifedata.com/resource/umls/id/C1288557 +xref: http://www.snomedbrowser.com/Codes/Details/367881009 +xref: UMLS:C0228633 {source="BIRNLEX:999"} +xref: UMLS:C1288557 {source="BIRNLEX:999"} +is_a: UBERON:0002318 ! white matter of spinal cord +intersection_of: UBERON:0002318 ! white matter of spinal cord +intersection_of: part_of UBERON:0003038 ! thoracic spinal cord +relationship: part_of UBERON:0003038 ! thoracic spinal cord + +[Term] +id: UBERON:0014638 +name: lumbar spinal cord dorsal horn +def: "A dorsal horn of spinal cord that is part of a lumbar spinal cord." [OBOL:automatic] +synonym: "lumbar spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:884] +synonym: "lumbar spinal cord posterior horn" RELATED [BIRNLEX:884] +xref: BIRNLEX:884 +xref: http://linkedlifedata.com/resource/umls/id/C1282146 +xref: UMLS:C1282146 {source="BIRNLEX:884"} +is_a: UBERON:0002256 ! dorsal horn of spinal cord +intersection_of: UBERON:0002256 ! dorsal horn of spinal cord +intersection_of: part_of UBERON:0002792 ! lumbar spinal cord +disjoint_from: UBERON:0031906 {source="NIFSTD"} ! lumbar spinal cord lateral horn +disjoint_from: UBERON:0033483 {source="NIFSTD"} ! lumbar spinal cord gray commissure +relationship: part_of UBERON:0002792 ! lumbar spinal cord + +[Term] +id: UBERON:0014639 +name: frontal sulcus +def: "A sulcus of brain that is part of a frontal cortex." [OBOL:automatic] +synonym: "frontal lobe sulci" EXACT PLURAL [HBA:FLs] +synonym: "frontal lobe sulcus" EXACT [] +xref: HBA:9354 +xref: http://linkedlifedata.com/resource/umls/id/C0459388 +xref: NCIT:C32639 +xref: UMLS:C0459388 {source="ncithesaurus:Frontal_Sulcus"} +is_a: UBERON:0013118 ! sulcus of brain +intersection_of: UBERON:0013118 ! sulcus of brain +intersection_of: part_of UBERON:0001870 ! frontal cortex +relationship: part_of UBERON:0001870 ! frontal cortex + +[Term] +id: UBERON:0014640 +name: occipital gyrus +def: "A gyrus that is part of a occipital lobe." [OBOL:automatic] +synonym: "gyrus occipitalis" RELATED LATIN [NeuroNames:152] +xref: BAMS:OG +xref: BIRNLEX:747 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=152 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=152 {source="BIRNLEX:747"} +xref: http://linkedlifedata.com/resource/umls/id/C1110642 +xref: UMLS:C1110642 {source="BIRNLEX:747"} +is_a: UBERON:0000200 ! gyrus +intersection_of: UBERON:0000200 ! gyrus +intersection_of: part_of UBERON:0002021 ! occipital lobe +relationship: part_of UBERON:0002021 ! occipital lobe + +[Term] +id: UBERON:0014641 +name: terminal nerve root +def: "A nerve root that extends_fibers_into a terminal nerve." [OBOL:automatic] +synonym: "cranial nerve 0 root" EXACT [http://en.wikipedia.org/wiki/Terminal_nerve] +synonym: "root of terminal nerve" EXACT [] +synonym: "terminal nerve root" EXACT HUMAN_PREFERRED [BIRNLEX:4045] +xref: BIRNLEX:4045 +is_a: UBERON:0002211 ! nerve root +intersection_of: UBERON:0002211 ! nerve root +intersection_of: extends_fibers_into UBERON:0002924 ! terminal nerve +relationship: extends_fibers_into UBERON:0002924 ! terminal nerve + +[Term] +id: UBERON:0014642 +name: vestibulocerebellum +def: "A phylogenetic subdivision of the cerebellum, the oldest part, which regulates balance and eye movements. It receives vestibular input from both the semicircular canals and from the vestibular nuclei, and sends fibres back to the medial and lateral vestibular nuclei. It also receives visual input from the superior colliculi and from the visual cortex (the latter via the pontine nuclei, forming a cortico-ponto-cerebellar pathway). Lesions of the vestibulocerebellum cause disturbances of balance and gait." [http://en.wikipedia.org/wiki/Anatomy_of_the_cerebellum#Phylogenetic_and_functional_divisions] +synonym: "archaeocerebellum" RELATED [BIRNLEX:904] +synonym: "archeocerebellum" RELATED [BIRNLEX:904] +synonym: "archicerebellum" EXACT [] +synonym: "archicerebellum" RELATED [BIRNLEX:904] +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002037 ! cerebellum + +[Term] +id: UBERON:0014643 +name: spinocerebellum +def: "A phylogenetic subdivision of the cerebellum, the intermediate part, which regulates body and limb movements. It receives proprioception input from the dorsal columns of the spinal cord (including the spinocerebellar tract) and the trigeminal nerve, as well as from visual and auditory systems. It sends fibres to deep cerebellar nuclei which in turn project to both the cerebral cortex and the brain stem, thus providing modulation of descending motor systems." [http://en.wikipedia.org/wiki/Anatomy_of_the_cerebellum#Phylogenetic_and_functional_divisions] +synonym: "paleocerebellum" EXACT [] +xref: http://en.wikipedia.org/wiki/Cerebellum +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002037 ! cerebellum + +[Term] +id: UBERON:0014644 +name: cerebrocerebellum +alt_id: UBERON:0004005 +def: "The part of the cerebellar cortex that receives input from the cerebral cortex via axons from the pontine relay nuclei." [https://www.ncbi.nlm.nih.gov/books/NBK11100/] +subset: pheno_slim +synonym: "cerebellum lateral hemisphere" EXACT [MP:0009965] +synonym: "cerebellum lateral zone" EXACT [MP:0009965] +synonym: "cerebrocerebellum" RELATED INCONSISTENT [MP:0009965] +synonym: "neocerebellum" EXACT [] +synonym: "pontocerebellum" EXACT [] +xref: DHBA:12390 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2128 +xref: http://en.wikipedia.org/wiki/Cerebellum +is_a: UBERON:0002749 ! regional part of cerebellar cortex +relationship: contributes_to_morphology_of UBERON:0002245 ! cerebellar hemisphere +relationship: part_of UBERON:0002245 ! cerebellar hemisphere + +[Term] +id: UBERON:0014645 +name: nucleus H of ventral tegmentum +def: "A nucleus present in the ventral tegmentum of squalomorph sharks." [ISBN:0471888893] +synonym: "nucleus H" BROAD [] +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus +relationship: part_of UBERON:0002691 ! ventral tegmental area + +[Term] +id: UBERON:0014646 +name: nucleus K of ventral tegmentum +def: "A nucleus present in the ventral tegmentum of skates." [ISBN:0471888893] +synonym: "nucleus K" BROAD [] +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus +relationship: part_of UBERON:0002691 ! ventral tegmental area + +[Term] +id: UBERON:0014647 +name: hemisphere part of cerebellar anterior lobe +def: "A multi-tissue structure that is part of a anterior lobe of cerebellum and is part of a cerebellar hemisphere." [OBOL:automatic] +synonym: "hemisphere of anterior lobe" EXACT [FMA:72254] +synonym: "hemisphere of anterior lobe of cerebellum" EXACT [FMA:72254] +synonym: "hemispherium lobus anterior" EXACT LATIN [FMA:72254, FMA:TA] +xref: BAMS:HAL +xref: BIRNLEX:1339 +xref: FMA:72254 +xref: HBA:12931 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=653 +is_a: UBERON:0002749 ! regional part of cerebellar cortex +intersection_of: UBERON:0002616 ! regional part of brain +intersection_of: part_of UBERON:0002131 ! anterior lobe of cerebellum +intersection_of: part_of UBERON:0002245 ! cerebellar hemisphere +relationship: part_of UBERON:0002131 ! anterior lobe of cerebellum +relationship: part_of UBERON:0002245 ! cerebellar hemisphere + +[Term] +id: UBERON:0014648 +name: hemisphere part of cerebellar posterior lobe +def: "A multi-tissue structure that is part of a cerebellar hemisphere and is part of a posterior lobe of cerebellum." [OBOL:automatic] +synonym: "hemisphere of posterior lobe" EXACT [FMA:72256] +synonym: "hemisphere of posterior lobe of cerebellum" EXACT [FMA:72256] +synonym: "hemispherium lobus posterior" EXACT LATIN [FMA:72256, FMA:TA] +xref: BAMS:HPL +xref: FMA:72256 +xref: HBA:12936 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=664 +xref: NLXANAT:20081261 +is_a: UBERON:0002749 ! regional part of cerebellar cortex +intersection_of: UBERON:0002616 ! regional part of brain +intersection_of: part_of UBERON:0002245 ! cerebellar hemisphere +intersection_of: part_of UBERON:0004002 ! posterior lobe of cerebellum +relationship: part_of UBERON:0002245 ! cerebellar hemisphere +relationship: part_of UBERON:0004002 ! posterior lobe of cerebellum + +[Term] +id: UBERON:0014649 +name: white matter of medulla oblongata +def: "A white matter that is part of a medulla oblongata." [OBOL:automatic] +synonym: "medullary white matter" RELATED [BAMS:mw] +synonym: "substantia alba medullae oblongatae" EXACT [FMA:TA] +synonym: "white matter of medulla" EXACT [FMA:83944] +synonym: "white substance of medulla" EXACT [FMA:83944] +xref: BAMS:mw +xref: BIRNLEX:1024 +xref: BIRNLEX:1414 +xref: FMA:83944 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=778 +is_a: UBERON:0014891 ! brainstem white matter +is_a: UBERON:0019262 ! white matter of myelencephalon +intersection_of: UBERON:0002316 ! white matter +intersection_of: part_of UBERON:0001896 ! medulla oblongata +relationship: part_of UBERON:0001896 ! medulla oblongata + +[Term] +id: UBERON:0014650 +name: dorsal hypothalamic nucleus +def: "A nerve cell nucleus situated in the dorsal portion of the intermediate hypothalamic region." [BTO:0002451, Dorlands_Medical_Dictionary:MerckSource] +synonym: "dorsal nucleus of hypothalamus" EXACT [FMA:77685] +synonym: "nucleus dorsalis hypothalami" RELATED [BTO:0002451] +xref: BAMS:DHy +xref: BAMS:Do +xref: BAMS:OH +xref: BTO:0002451 +xref: FMA:77685 +is_a: UBERON:0006568 {source="BTO"} ! hypothalamic nucleus + +[Term] +id: UBERON:0014663 +name: nucleus recessus lateralis +xref: BTO:0003662 +is_a: UBERON:0036177 ! nucleus recessus + +[Term] +id: UBERON:0014664 +name: nucleus recessus posterioris +xref: BTO:0003663 +is_a: UBERON:0036177 ! nucleus recessus + +[Term] +id: UBERON:0014665 +name: nucleus preopticus +def: "The nucleus preopticus (NPO) of the hypothalamus of common carp, is a homolog of the paraventricular nucleus of mammals." [BTO:0003664] +synonym: "nucleus praeopticus" RELATED [BTO:0003664] +xref: BTO:0003664 +is_a: UBERON:0006568 {source="BTO"} ! hypothalamic nucleus + +[Term] +id: UBERON:0014666 +name: nucleus recessus preopticus +xref: BTO:0003665 +is_a: UBERON:0006568 {source="BTO"} ! hypothalamic nucleus + +[Term] +id: UBERON:0014667 +name: periventricular nucleus of hypothalamus +def: "A small nucleus at the base of the hypothalamus, adjacent to the arcuate nucleus." [BTO:0003795] +synonym: "periventricular hypothalamic nucleus" RELATED [BTO:0003795] +synonym: "periventricular nucleus of the hypothalamus" RELATED [BAMS:PE] +xref: BAMS:PE +xref: BAMS:Pe +xref: BTO:0003795 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1593 +is_a: UBERON:0006568 {source="BTO"} ! hypothalamic nucleus + +[Term] +id: UBERON:0014668 +name: distal interphalangeal joint of manual digit 2 +subset: pheno_slim +synonym: "distal interphalangeal joint of index finger" EXACT [FMA:35334] +synonym: "distal interphalangeal joint of manual digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: FMA:35334 +xref: http://www.snomedbrowser.com/Codes/Details/361852003 +is_a: UBERON:0007729 ! interphalangeal joint of manual digit 2 +is_a: UBERON:0014677 ! distal interphalangeal joint of digit 2 +intersection_of: UBERON:0009768 ! distal interphalangeal joint +intersection_of: part_of UBERON:0003622 ! manual digit 2 + +[Term] +id: UBERON:0014670 +name: distal interphalangeal joint of manual digit 4 +subset: pheno_slim +synonym: "distal interphalangeal joint of manual digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "distal interphalangeal joint of ring finger" EXACT [FMA:35340] +xref: FMA:35340 +xref: http://www.snomedbrowser.com/Codes/Details/361856000 +is_a: UBERON:0007731 ! interphalangeal joint of manual digit 4 +is_a: UBERON:0014679 ! distal interphalangeal joint of digit 4 +intersection_of: UBERON:0009768 ! distal interphalangeal joint +intersection_of: part_of UBERON:0003624 ! manual digit 4 + +[Term] +id: UBERON:0014671 +name: distal interphalangeal joint of manural digit 5 +synonym: "distal interphalangeal joint of little finger" EXACT [FMA:35343] +synonym: "distal interphalangeal joint of manural digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: FMA:35343 +xref: http://www.snomedbrowser.com/Codes/Details/361858004 +is_a: UBERON:0007732 ! interphalangeal joint of manual digit 5 +is_a: UBERON:0014680 ! distal interphalangeal joint of digit 5 +intersection_of: UBERON:0009768 ! distal interphalangeal joint +intersection_of: part_of UBERON:0003625 ! manual digit 5 + +[Term] +id: UBERON:0014672 +name: distal interphalangeal joint of pedal digit 2 +subset: pheno_slim +synonym: "distal interphalangeal joint of pedal digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "distal interphalangeal joint of second digit of foot" EXACT [FMA:35369] +synonym: "distal interphalangeal joint of second toe" EXACT [FMA:35369] +xref: FMA:35369 +xref: http://www.snomedbrowser.com/Codes/Details/361878007 +is_a: UBERON:0007725 ! interphalangeal joint of pedal digit 2 +is_a: UBERON:0014677 ! distal interphalangeal joint of digit 2 +intersection_of: UBERON:0009768 ! distal interphalangeal joint +intersection_of: part_of UBERON:0003632 ! pedal digit 2 + +[Term] +id: UBERON:0014674 +name: distal interphalangeal joint of pedal digit 4 +subset: pheno_slim +synonym: "distal interphalangeal joint of fourth digit of foot" EXACT [FMA:35387] +synonym: "distal interphalangeal joint of fourth toe" EXACT [FMA:35387] +synonym: "distal interphalangeal joint of pedal digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: FMA:35387 +xref: http://www.snomedbrowser.com/Codes/Details/361882009 +is_a: UBERON:0007727 ! interphalangeal joint of pedal digit 4 +is_a: UBERON:0014679 ! distal interphalangeal joint of digit 4 +intersection_of: UBERON:0009768 ! distal interphalangeal joint +intersection_of: part_of UBERON:0003634 ! pedal digit 4 + +[Term] +id: UBERON:0014675 +name: distal interphalangeal joint of pedal digit 5 +subset: pheno_slim +synonym: "distal interphalangeal joint of fifth digit of foot" EXACT [FMA:35393] +synonym: "distal interphalangeal joint of fifth toe" EXACT [FMA:35393] +synonym: "distal interphalangeal joint of little toe" EXACT [FMA:35393] +synonym: "distal interphalangeal joint of pedal digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: FMA:35393 +xref: http://www.snomedbrowser.com/Codes/Details/361884005 +is_a: UBERON:0007728 ! interphalangeal joint of pedal digit 5 +is_a: UBERON:0014680 ! distal interphalangeal joint of digit 5 +intersection_of: UBERON:0009768 ! distal interphalangeal joint +intersection_of: part_of UBERON:0003635 ! pedal digit 5 + +[Term] +id: UBERON:0014677 +name: distal interphalangeal joint of digit 2 +def: "A distal interphalangeal joint that is part of a digit 2." [OBOL:automatic] +synonym: "distal interphalangeal joint 2" RELATED [] +synonym: "distal interphalangeal joint of digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: NCIT:C102291 +is_a: UBERON:0009768 ! distal interphalangeal joint +intersection_of: UBERON:0009768 ! distal interphalangeal joint +intersection_of: part_of UBERON:0006049 ! digit 2 +relationship: part_of UBERON:0006049 ! digit 2 + +[Term] +id: UBERON:0014679 +name: distal interphalangeal joint of digit 4 +def: "A distal interphalangeal joint that is part of a digit 4." [OBOL:automatic] +synonym: "distal interphalangeal joint 4" RELATED [] +synonym: "distal interphalangeal joint of digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: NCIT:C102293 +is_a: UBERON:0009768 ! distal interphalangeal joint +intersection_of: UBERON:0009768 ! distal interphalangeal joint +intersection_of: part_of UBERON:0006051 ! digit 4 +relationship: part_of UBERON:0006051 ! digit 4 + +[Term] +id: UBERON:0014680 +name: distal interphalangeal joint of digit 5 +def: "A distal interphalangeal joint that is part of a digit 5." [OBOL:automatic] +synonym: "distal interphalangeal joint 5" RELATED [] +synonym: "distal interphalangeal joint of digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +xref: NCIT:C102294 +is_a: UBERON:0009768 ! distal interphalangeal joint +intersection_of: UBERON:0009768 ! distal interphalangeal joint +intersection_of: part_of UBERON:0006052 ! digit 5 +relationship: part_of UBERON:0006052 ! digit 5 + +[Term] +id: UBERON:0014682 +name: tooth whorl +def: "A spirally arranged cluster of teeth" [http://orcid.org/0000-0002-6601-2165] +synonym: "spiral tooth cluster" NARROW [] +synonym: "tooth spiral" EXACT [] +synonym: "whorl of teeth" EXACT [] +is_a: UBERON:0009678 ! tooth row +relationship: present_in_taxon NCBITaxon:7863 {notes="stem", source="http://www.ncbi.nlm.nih.gov/pubmed/23445952", taxon="helicoprion"} +relationship: present_in_taxon NCBITaxon:8287 + +[Term] +id: UBERON:0014683 +name: parasymphisial tooth whorl +def: "A tooth whorl located at or near the mandibular symphysis." [http://orcid.org/0000-0002-6601-2165] +synonym: "parasymphisial tooth spiral" EXACT [] +synonym: "parasymphysical tooth spiral" EXACT [] +is_a: UBERON:0009679 ! set of lower jaw teeth +is_a: UBERON:0014682 ! tooth whorl +relationship: present_in_taxon NCBITaxon:8287 + +[Term] +id: UBERON:0014684 +name: Helicoprion tooth whorl +def: "A tooth whorl found in extinct holocephalids, in which the teeth in the center of the spiral are smallest and oldest, probably occupying the entire mandibular arch." [http://en.wikipedia.org/wiki/Helicoprion#Nature_of_the_tooth_whorl, http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0009679 ! set of lower jaw teeth +is_a: UBERON:0014682 ! tooth whorl +relationship: present_in_taxon NCBITaxon:7863 {notes="stem", source="http://www.ncbi.nlm.nih.gov/pubmed/23445952", taxon="helicoprion"} + +[Term] +id: UBERON:0014685 +name: pterygoid plexus +def: "The pterygoid plexus is a venous plexus of considerable size, and is situated between the temporalis muscle and lateral pterygoid muscle, and partly between the two pterygoid muscles." [http://en.wikipedia.org/wiki/Pterygoid_plexus] +synonym: "middle meningeal vein" RELATED [http://en.wikipedia.org/wiki/Pterygoid_plexus] +synonym: "plexus pterygoideus" RELATED LATIN [http://en.wikipedia.org/wiki/Pterygoid_plexus] +synonym: "plexus venosus pterygoideus" EXACT LATIN [FMA:TA] +synonym: "pterygoid plexus vein" RELATED [http://en.wikipedia.org/wiki/Pterygoid_plexus] +synonym: "pterygoid venous plexus" EXACT [http://en.wikipedia.org/wiki/Pterygoid_plexus] +synonym: "pterygoid venous plexus" EXACT [FMA:50944] +xref: FMA:50944 +xref: Pterygoid:plexus +is_a: UBERON:0001593 {source="FMA"} ! venous plexus +is_a: UBERON:0011362 ! cranial blood vasculature + +[Term] +id: UBERON:0014686 +name: angular vein +def: "The angular vein formed by the junction of the frontal vein and supraorbital vein, runs obliquely downward, on the side of the root of the nose, to the level of the lower margin of the orbit, where it becomes the anterior facial vein. It receives the external nasal veins of the ala nasi, and communicates with the superior ophthalmic vein through the nasofrontal vein, thus establishing an important anastomosis between the anterior facial vein and the cavernous sinus." [http://en.wikipedia.org/wiki/Angular_vein] +xref: Angular:vein +xref: FMA:50893 +xref: http://www.snomedbrowser.com/Codes/Details/151804007 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0003502 ! neck blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +relationship: part_of UBERON:0001653 ! facial vein +relationship: tributary_of UBERON:0001653 ! facial vein + +[Term] +id: UBERON:0014687 +name: temporal sulcus +def: "Any of three grooves in the temporal lobe including the inferior, middle, and superior temporal sulci." [ncithesaurus:Temporal_Sulcus] +synonym: "temporal lobe sulci" EXACT PLURAL [HBA:TLs] +synonym: "temporal lobe sulcus" EXACT [] +xref: HBA:9377 +xref: http://linkedlifedata.com/resource/umls/id/C0459389 +xref: NCIT:C33744 +is_a: UBERON:0013118 ! sulcus of brain +intersection_of: UBERON:0013118 ! sulcus of brain +intersection_of: part_of UBERON:0001871 ! temporal lobe +relationship: part_of UBERON:0001871 ! temporal lobe + +[Term] +id: UBERON:0014689 +name: middle temporal sulcus +def: "A groove or cleft that divides the outer surface of the temporal lobe running in the same direction but at a lower level to the superior temporal sulcus." [ncithesaurus:Middle_Temporal_Sulcus] +synonym: "middle (medial) temporal sulcus" RELATED [BAMS:mts] +xref: BAMS:mts +xref: HBA:10150 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=131 +xref: http://linkedlifedata.com/resource/umls/id/C0228241 +xref: http://www.snomedbrowser.com/Codes/Details/279345006 +xref: NCIT:C33127 +is_a: UBERON:0014687 ! temporal sulcus + +[Term] +id: UBERON:0014690 +name: left gastric vein +def: "The Left gastric vein (or coronary vein) carries blood low in Oxygen, tributaries derived from both surfaces of the stomach; it runs from right to left along the lesser curvature of the stomach, between the two layers of the lesser omentum, to the esophageal opening of the stomach, where it receives some esophageal veins. It then turns backward and passes from left to right behind the omental bursa and drains into the portal vein. Esophageal and paraesophageal varices are primarily supplied by the left gastric vein and typically drain into the azygos/hemiazygos venous system." [http://en.wikipedia.org/wiki/Left_gastric_vein] +synonym: "coronary vein" RELATED [http://en.wikipedia.org/wiki/Left_gastric_vein] +synonym: "vena gastrica sinistra" EXACT LATIN [http://en.wikipedia.org/wiki/Left_gastric_vein] +xref: FMA:15399 +xref: http://en.wikipedia.org/wiki/Left_gastric_vein +xref: http://www.snomedbrowser.com/Codes/Details/281061005 +is_a: UBERON:0004450 ! gastric vein +intersection_of: UBERON:0004450 ! gastric vein +intersection_of: in_left_side_of UBERON:0002100 ! trunk +relationship: in_left_side_of UBERON:0002100 ! trunk + +[Term] +id: UBERON:0014691 +name: right gastric vein +def: "The right gastric vein, also known as the pyloric vein, drains blood from the lesser curvature of the stomach into the hepatic portal vein. It is part of the portal circulation." [http://en.wikipedia.org/wiki/Right_gastric_vein] +synonym: "pyloric vein" RELATED [http://en.wikipedia.org/wiki/Right_gastric_vein] +synonym: "vena gastrica dextra" EXACT LATIN [http://en.wikipedia.org/wiki/Right_gastric_vein] +xref: FMA:15400 +xref: http://en.wikipedia.org/wiki/Right_gastric_vein +xref: http://www.snomedbrowser.com/Codes/Details/281062003 +is_a: UBERON:0004450 ! gastric vein +intersection_of: UBERON:0004450 ! gastric vein +intersection_of: in_right_side_of UBERON:0002100 ! trunk +relationship: in_right_side_of UBERON:0002100 ! trunk + +[Term] +id: UBERON:0014692 +name: superficial epigastric vein +def: "The superficial epigastric vein is a vein which travels with the superficial epigastric artery. It joins the accessory saphenous vein near the fossa ovalis." [http://en.wikipedia.org/wiki/Superficial_epigastric_vein] +xref: FMA:44318 +xref: http://en.wikipedia.org/wiki/Superficial_epigastric_vein +xref: http://www.snomedbrowser.com/Codes/Details/286971006 +is_a: UBERON:0004261 ! lower leg blood vessel +is_a: UBERON:0006356 ! epigastric vein +is_a: UBERON:0035550 ! superficial vein +relationship: part_of UBERON:0001363 ! great saphenous vein +relationship: tributary_of UBERON:0001363 ! great saphenous vein + +[Term] +id: UBERON:0014693 +name: inferior alveolar artery +xref: FMA:49695 +xref: http://www.snomedbrowser.com/Codes/Details/276151008 +is_a: UBERON:0009654 ! alveolar artery + +[Term] +id: UBERON:0014694 +name: posterior auricular artery +def: "The posterior auricular artery is a small artery and arises from the external carotid artery, above the Digastric muscle and Stylohyoid muscle, opposite the apex of the styloid process. It ascends posteriorly beneath the parotid gland, along the styloid process of the temporal bone, between the cartilage of the ear and the mastoid process of the temporal bone along the lateral side of the head. The posterior auricular artery supplies blood to the scalp posterior to the auricle and to the auricle itself." [http://en.wikipedia.org/wiki/Posterior_auricular_artery] +xref: FMA:49624 +xref: http://en.wikipedia.org/wiki/Posterior_auricular_artery +xref: http://www.snomedbrowser.com/Codes/Details/244220004 +is_a: UBERON:0009655 ! auricular artery +is_a: UBERON:0035398 ! branch of external carotid artery +relationship: supplies UBERON:0001757 ! pinna + +[Term] +id: UBERON:0014695 +name: deep auricular artery +def: "The deep auricular artery often arises in common with the anterior tympanic artery. It ascends in the substance of the parotid gland, behind the temporomandibular articulation, pierces the cartilaginous or bony wall of the external acoustic meatus, and supplies its cuticular lining and the outer surface of the tympanic membrane. It gives a branch to the temporomandibular joint." [http://en.wikipedia.org/wiki/Deep_auricular_artery] +xref: FMA:49689 +xref: http://en.wikipedia.org/wiki/Deep_auricular_artery +xref: http://www.snomedbrowser.com/Codes/Details/147157007 +is_a: UBERON:0009655 ! auricular artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0009655 ! auricular artery +intersection_of: part_of UBERON:0035551 ! deep vasculature +relationship: branching_part_of UBERON:0001616 {source="FMA"} ! maxillary artery +relationship: part_of UBERON:0001616 ! maxillary artery +relationship: part_of UBERON:0035551 ! deep vasculature +relationship: supplies UBERON:0010069 ! outer epithelial layer of tympanic membrane + +[Term] +id: UBERON:0014696 +name: anterior choroidal artery +def: "The anterior choroidal artery originates from the internal carotid artery, though it also rarely arises from the middle cerebral artery." [http://en.wikipedia.org/wiki/Anterior_choroidal_artery] +synonym: "anterior choroidal" RELATED [http://en.wikipedia.org/wiki/Anterior_choroidal_artery] +xref: FMA:50087 +xref: http://en.wikipedia.org/wiki/Anterior_choroidal_artery +xref: http://www.snomedbrowser.com/Codes/Details/244211008 +xref: NCIT:C32083 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0013151 ! choroidal artery +disjoint_from: UBERON:0014697 {source="lexical"} ! posterior choroidal artery +relationship: branching_part_of UBERON:0001532 {source="FMA"} ! internal carotid artery +relationship: part_of UBERON:0001532 ! internal carotid artery + +[Term] +id: UBERON:0014697 +name: posterior choroidal artery +xref: FMA:50657 +xref: http://www.snomedbrowser.com/Codes/Details/369342007 +xref: NCIT:C33352 +is_a: UBERON:0013151 ! choroidal artery +is_a: UBERON:0035508 ! branch of posterior cerebral artery + +[Term] +id: UBERON:0014698 +name: lacrimal caruncle +synonym: "caruncula lacrimalis" EXACT LATIN [FMA:TA] +xref: FMA:77672 +xref: http://www.snomedbrowser.com/Codes/Details/362530000 +is_a: UBERON:0010305 {source="FMA"} ! subdivision of conjunctiva + +[Term] +id: UBERON:0014699 +name: extraembryonic venous system +def: "A venous system that overlaps a umbilical cord and is part of a entire extraembryonic component." [OBOL:automatic] +xref: EHDAA2:0000479 +xref: EMAPA:16374 +xref: VHOG:0000282 +is_a: UBERON:0004582 ! venous system +is_a: UBERON:0014701 {source="VHOG"} ! extraembryonic vascular system + +[Term] +id: UBERON:0014701 +name: extraembryonic vascular system +def: "A vascular system that overlaps a umbilical cord and is part of a entire extraembryonic component." [OBOL:automatic] +xref: EHDAA2:0000478 +xref: EMAPA:16370 +xref: VHOG:0001396 +is_a: UBERON:0007798 ! vascular system +relationship: part_of UBERON:0016887 ! entire extraembryonic component + +[Term] +id: UBERON:0014702 +name: frontonasal process epithelium +def: "A epithelium that is part of a frontonasal prominence." [OBOL:automatic] +xref: EHDAA2:0004108 +xref: EMAPA:32918 +is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0004066 ! frontonasal prominence +relationship: develops_from UBERON:0000076 {source="EHDAA2"} ! external ectoderm +relationship: part_of UBERON:0004066 ! frontonasal prominence + +[Term] +id: UBERON:0014703 +name: anal membrane ectodermal component +def: "A unilaminar epithelium that develops_from a ectoderm and is part of a anal region." [OBOL:automatic] +xref: EHDAA2:0004019 +xref: EMAPA:25040 +is_a: UBERON:0000490 ! unilaminar epithelium +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000490 ! unilaminar epithelium +intersection_of: develops_from UBERON:0000924 ! ectoderm +intersection_of: part_of UBERON:0001353 ! anal region +relationship: part_of UBERON:0001353 ! anal region + +[Term] +id: UBERON:0014704 +name: pleuroperitoneal canal lumen +def: "A anatomical space that is enclosed by a pleuroperitoneal canal." [OBOL:automatic] +synonym: "pleuro-peritoneal canal cavity" EXACT [EMAPA:25034] +xref: EHDAA2:0004736 +xref: EMAPA:25034 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0006279 ! pleuroperitoneal canal +relationship: develops_from UBERON:0002323 {source="EHDAA2"} ! coelemic cavity lumen +relationship: luminal_space_of UBERON:0006279 ! pleuroperitoneal canal +relationship: part_of UBERON:0006279 ! pleuroperitoneal canal + +[Term] +id: UBERON:0014705 +name: median lingual swelling epithelium +def: "A epithelium that is part of a median lingual swelling." [OBOL:automatic] +synonym: "tuberculum impar epitheilium" RELATED [EMAPA:17188] +xref: EHDAA2:0001085 +xref: EMAPA:17188 +is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0003929 ! digestive tract epithelium +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0006756 ! median lingual swelling +relationship: develops_from UBERON:0013156 {source="EHDAA2"} ! 1st arch mandibular endoderm +relationship: part_of UBERON:0006756 ! median lingual swelling + +[Term] +id: UBERON:0014706 +name: primitive renal collecting duct system +synonym: "metanephros primitive collecting ducts" EXACT [EHDAA2:0001147] +synonym: "primitive collecting duct" EXACT [EMAPA:17646] +xref: EHDAA2:0001147 +xref: EMAPA:17646 +is_a: UBERON:0007501 {source="EHDAA2"} ! arborizing epithelial duct system +is_a: UBERON:0012275 ! meso-epithelium +relationship: develops_from UBERON:0000084 {source="EHDAA2"} ! ureteric bud + +[Term] +id: UBERON:0014707 +name: hyoplastron +def: "A paired plastron element that is in the anterior part of the plastron, anterior to the hypoplastron, posterior to the epiplastron and adjacent to the median entoplastron." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0011657 ! dermal element of plastron +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0008276 ! plastron + +[Term] +id: UBERON:0014708 +name: costal plate of carapace +def: "One of a series of plates on each side of the carapace, forming two rows between the peripheral plates and the median neural plates." [http://orcid.org/0000-0002-6601-2165] +synonym: "lateral plate of carapace" RELATED [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0011665 ! carapace bone +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0008275 ! carapace + +[Term] +id: UBERON:0014709 +name: carapace primordium +def: "A primordium that gives rise to a carapace." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0006598 ! presumptive structure +relationship: has_potential_to_develop_into UBERON:0008275 ! carapace + +[Term] +id: UBERON:0014710 +name: carapacial ridge +def: "A longitidunial ridge on the lateral aspect of the flank that appears in the late pharyngula stage of chelonians. It forms the leading edge of the laterally expanding carapacial primordium." [http://embryo.asu.edu/pages/development-turtle-carapace-1989-ann-campbell-burke] +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0014709 ! carapace primordium + +[Term] +id: UBERON:0014711 +name: carapacial ridge mesenchyme +def: "A mesenchyme that is part of a carapacial ridge." [OBOL:automatic] +is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0005291 ! embryonic tissue +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0014710 ! carapacial ridge +relationship: part_of UBERON:0014710 ! carapacial ridge + +[Term] +id: UBERON:0014712 +name: carapacial ridge ectoderm +def: "A epithelium that is part of a carapacial ridge." [OBOL:automatic] +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0014710 ! carapacial ridge +relationship: develops_from UBERON:0000076 {source="cjm"} ! external ectoderm +relationship: part_of UBERON:0014710 ! carapacial ridge + +[Term] +id: UBERON:0014716 +name: interlobular duct +def: "A duct that is located between lobules, within the thin connective tissue septa that separate lobules. All interlobular ducts are excretory." [ncithesaurus:Interlobular_Duct] +xref: http://linkedlifedata.com/resource/umls/id/C1512857 +xref: Interlobular:ducts +xref: NCIT:C32828 +is_a: UBERON:0035050 ! excretory duct +intersection_of: UBERON:0000058 ! duct +intersection_of: connected_to UBERON:0009911 ! lobule +intersection_of: part_of UBERON:0002384 ! connective tissue +relationship: connected_to UBERON:0009911 ! lobule +relationship: part_of UBERON:0002384 ! connective tissue + +[Term] +id: UBERON:0014717 +name: mucous acinus +def: "The secretory unit of a mucous gland. The acinar portion is composed of mucous secreting cells." [http://orcid.org/0000-0002-6601-2165, http://www.siumed.edu/~dking2/intro/glands.htm] +synonym: "acinus of mucuous gland" EXACT [] +synonym: "mucus acinus" EXACT [] +xref: FMA:86278 +is_a: UBERON:0011858 ! acinus of exocrine gland +intersection_of: UBERON:0009842 ! glandular acinus +intersection_of: part_of UBERON:0000414 ! mucous gland +relationship: part_of UBERON:0000414 ! mucous gland + +[Term] +id: UBERON:0014719 +name: intralobular duct +def: "A duct that is located within a lobule, with no more connective tissue intervening between ducts and secretory units (i.e., acini or tubules) than between adjacent secretory units. Intercalated and striated ducts are intralobular" [http://www.siumed.edu/~dking2/intro/glands.htm] +synonym: "intralobular ductule" RELATED [] +xref: http://www.snomedbrowser.com/Codes/Details/205214009 +is_a: UBERON:0000058 ! duct +intersection_of: UBERON:0000058 ! duct +intersection_of: part_of UBERON:0009911 ! lobule +relationship: part_of UBERON:0009911 ! lobule + +[Term] +id: UBERON:0014720 +name: interlobar duct +def: "A duct that is located between lobes, within conspicuous, thick connective tissue septa that separate lobes. All interlobar ducts are excretory." [http://www.siumed.edu/~dking2/intro/glands.htm] +synonym: "intralobular ductule" RELATED [] +is_a: UBERON:0035050 ! excretory duct +intersection_of: UBERON:0000058 ! duct +intersection_of: connects UBERON:0009912 ! anatomical lobe +intersection_of: part_of UBERON:0002384 ! connective tissue +relationship: connects UBERON:0009912 ! anatomical lobe +relationship: part_of UBERON:0002384 ! connective tissue + +[Term] +id: UBERON:0014725 +name: intercalated duct +def: "A small duct which drains individual secretory units. These are usually inconspicuous, lined by a simple epithelium consisting of low cuboidal cells." [http://www.siumed.edu/~dking2/intro/glands.htm] +synonym: "secretory duct" RELATED [] +xref: http://linkedlifedata.com/resource/umls/id/C1512817 +xref: NCIT:C32820 +is_a: UBERON:0014719 ! intralobular duct + +[Term] +id: UBERON:0014726 +name: intercalated duct of pancreas +def: "A intercalated duct that is part of a pancreas." [OBOL:automatic] +synonym: "ductus intercalatus (pancreas)" EXACT [FMA:16013] +synonym: "pancreatic ductule" EXACT [FMA:16013] +xref: FMA:16013 +xref: http://www.snomedbrowser.com/Codes/Details/247520007 +xref: NCIT:C49267 +is_a: UBERON:0014725 ! intercalated duct +intersection_of: UBERON:0014725 ! intercalated duct +intersection_of: part_of UBERON:0001264 ! pancreas +relationship: part_of UBERON:0001264 ! pancreas + +[Term] +id: UBERON:0014727 +name: intercalated duct of salivary gland +def: "The tiny tubules with a very thin epithelial layer in the salivary glands running from the salivary acini into the striated duct." [ncithesaurus:Intercalated_Duct_of_the_Salivary_Gland_System] +xref: FMA:60050 +xref: NCIT:C49266 +is_a: UBERON:0001837 ! duct of salivary gland +is_a: UBERON:0014725 ! intercalated duct +intersection_of: UBERON:0014725 ! intercalated duct +intersection_of: part_of UBERON:0001044 ! saliva-secreting gland + +[Term] +id: UBERON:0014729 +name: striated duct of salivary gland +def: "gland duct which connects an intercalated duct to an interlobular duct in a salivary gland." [http://en.wikipedia.org/wiki/Striated_duct, http://orcid.org/0000-0002-6601-2165] +xref: FMA:60051 +xref: http://linkedlifedata.com/resource/umls/id/C1514993 +xref: NCIT:C33635 +is_a: UBERON:0001837 ! duct of salivary gland +is_a: UBERON:0014719 ! intralobular duct +intersection_of: UBERON:0001837 ! duct of salivary gland +intersection_of: connects UBERON:0014720 ! interlobar duct +intersection_of: connects UBERON:0014727 ! intercalated duct of salivary gland +relationship: connects UBERON:0014720 ! interlobar duct +relationship: connects UBERON:0014727 ! intercalated duct of salivary gland + +[Term] +id: UBERON:0014730 +name: osteon +def: "A circular structural unit of bone tissue. It consists of a central hole, the Haversian canal through which blood vessels run, surrounded by concentric rings, called lamellae." [MESH:A10.165.265.507] +synonym: "bone matrix" RELATED [http://en.wikipedia.org/wiki/Osteon] +synonym: "haversian canal" RELATED [MESH:A10.165.265.507] +synonym: "haversian system" EXACT [FMA:32693] +synonym: "haversian system" RELATED [http://en.wikipedia.org/wiki/Osteon] +synonym: "haversian system" RELATED [MESH:A10.165.265.507] +synonym: "haversian systems" RELATED [http://en.wikipedia.org/wiki/Osteon] +synonym: "osteonum" EXACT [FMA:32693] +synonym: "volkmann's vessel" RELATED [http://en.wikipedia.org/wiki/Osteon] +xref: BTO:0004592 +xref: FMA:32693 +xref: http://en.wikipedia.org/wiki/Osteon +xref: http://www.snomedbrowser.com/Codes/Details/361726004 +xref: MESH:D006253 +xref: NCIT:C32714 +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0001439 ! compact bone tissue + +[Term] +id: UBERON:0014731 +name: haversian canal +def: "Haversian canals are a series of tubes around narrow channels formed by lamellae. This is the region of bone called compact bone. Osteons are arranged in parallel to the long axis of the bone. The Haversian canals surround blood vessels and nerve cells throughout the bone and communicate with osteocytes in lacunae (spaces within the dense bone matrix that contain the living bone cells) through canaliculi. This unique arrangement is conducive to mineral salt deposits and storage which gives bone tissue its strength." [http://en.wikipedia.org/wiki/Haversian_canal] +synonym: "haversian canals" RELATED [http://en.wikipedia.org/wiki/Haversian_canal] +synonym: "nutrient canal" RELATED [MESH:A10.165.265.507] +xref: FMA:224787 +xref: Haversian:canal +xref: http://www.snomedbrowser.com/Codes/Details/3336003 +xref: NCIT:C32713 +is_a: UBERON:0005744 ! bone foramen +intersection_of: UBERON:0004111 ! anatomical conduit +intersection_of: part_of UBERON:0014730 ! osteon +relationship: conduit_for UBERON:0001981 ! blood vessel +relationship: part_of UBERON:0014730 ! osteon + +[Term] +id: UBERON:0014732 +name: compound cell cluster organ +def: "An anatomical structure consisting of multiple cell cluster organs, that has a largely bona-fide boundary and that does not contain portions of tissue." [CARO:0010002] +comment: Examples: compound eye; Johnston's organ. +subset: upper_level +xref: CARO:0010002 +xref: FBbt:00007230 +is_a: UBERON:0000062 ! organ +relationship: composed_primarily_of UBERON:0010001 ! cell cluster organ +relationship: has_component UBERON:0010001 {min_cardinality="2"} ! cell cluster organ + +[Term] +id: UBERON:0014733 +name: dorsal ventricular ridge of pallium +def: "A large expansion of the lateral wall of the telencephalon, located in the pallium. Found in reptiles and birds" [http://icb.oxfordjournals.org/content/42/4/743.full, http://www.ncbi.nlm.nih.gov/pubmed/23027930] +synonym: "dorsal ventricular ridge" EXACT [] +synonym: "DVR" RELATED ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23027930] +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000203 ! pallium +relationship: present_in_taxon NCBITaxon:8782 + +[Term] +id: UBERON:0014734 +name: allocortex +def: "One of two types of cerebral cortex defined on the basis of cytoarchitecture and fetal development. The other is neocortex. Allocortex does not pass through a prenatal phase of six-layered structure and has three or four layers in the mature brain ( Schiebler-1999 ). Allocortex has three subtypes: paleocortex, archicortex and periallocortex. This definition differs from that in some older sources, which excluded the olfactory bulb and the accessory olfactory bulb ( Carpenter-1983 )." [NeuroNames:759] +comment: The allocortex is composed of hippocampal and olfactory structures, which usually display three-layered organization[Brainspan] +synonym: "allocortex (Stephan)" RELATED [NeuroNames:1598] +synonym: "heterogenetic cortex" RELATED [NeuroNames:1598] +synonym: "heterogenetic formations" RELATED [NeuroNames:1598] +synonym: "intercalated nucleus of the medulla" RELATED [NeuroNames:759] +synonym: "nucleus intercalatus (staderini)" RELATED LATIN [NeuroNames:759] +synonym: "transitional cortex" RELATED [ISBN:0471888893] +xref: BAMS:All +xref: DHBA:10292 +xref: FMA:83687 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=759 +xref: http://en.wikipedia.org/wiki/Allocortex +xref: NLX:143557 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000956 ! cerebral cortex + +[Term] +id: UBERON:0014735 +name: paleocortex +def: "Part of the allocortex defined on the basis of cytoarchitecture. The other two are archicortex and periallocortex. It consists of very thin, primitive cortex with few clearly defined layers. It is distinguished ontogenetically by the fact that it does not develop through a cortical plate. It includes the olfactory bulb, accessory olfactory bulb, olfactory tubercle, septum, prepyriform area and periamygdalar area ( Stephan-1975 ). (adapted from Brain Info)" [NLX:143559] +synonym: "palaeocortex" EXACT LATIN [FMA:62430, FMA:TA] +synonym: "paleocortex" RELATED [NeuroNames:2336] +synonym: "paleocortex (semicortex)" EXACT [DHBA:10306] +synonym: "paleocortex (Zilles)" RELATED [NeuroNames:2336] +synonym: "paleokortikale Regionen@de" RELATED [NeuroNames:2336] +xref: BAMS:Paleocortex +xref: DHBA:10306 +xref: FMA:62430 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2336 +xref: http://en.wikipedia.org/wiki/Paleocortex +xref: NLX:143559 +is_a: UBERON:0014734 {source="FMA"} ! allocortex + +[Term] +id: UBERON:0014736 +name: periallocortex +def: "Agranular cortical structures located next to the allocortex." [BRAINSPAN:BRAINSPAN] +synonym: "periallocortex" EXACT [NeuroNames:2315] +xref: DHBA:10313 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2315 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: adjacent_to UBERON:0014734 ! allocortex +relationship: part_of UBERON:0000956 ! cerebral cortex + +[Term] +id: UBERON:0014738 +name: medial pallium +def: "Subdivision of pallium that is located is the medial position in vertebrates with an evaginated brain and in the distal position in vertebrates with an everted brain." [ISBN:0471888893] +synonym: "area dorsalis telencephali, zona medialis" RELATED [] +synonym: "distal pallium (everted brain)" RELATED [ISBN:0471888893] +synonym: "hippocampal pallium" RELATED [ISBN:0471888893] +synonym: "lateral pallium (everted brain)" RELATED [ISBN:0471888893] +synonym: "lateral zone of dorsal telencephalon" EXACT [ZFA:0000536] +synonym: "medial zone of dorsal telencephalic area" EXACT [] +synonym: "medial zone of dorsal telencephalon" EXACT [] +synonym: "MP" BROAD ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23375746] +xref: TAO:0000536 +xref: ZFA:0000536 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +disjoint_from: UBERON:0014741 {source="lexical"} ! lateral pallium +relationship: part_of UBERON:0000203 ! pallium + +[Term] +id: UBERON:0014740 +name: dorsal pallium +def: "Subdivision of pallium that is located dorsally." [ISBN:0471888893] +synonym: "area dorsalis telencephali, zona dorsalis" EXACT [] +synonym: "dorsal zone of D" RELATED [] +synonym: "dorsal zone of dorsal telencephalic area" EXACT [] +synonym: "dorsal zone of dorsal telencephalon" EXACT [] +synonym: "DP" BROAD ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23375746] +xref: TAO:0000506 +xref: ZFA:0000506 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000203 ! pallium + +[Term] +id: UBERON:0014741 +name: lateral pallium +def: "Subdivision of pallium that is located laterally." [ISBN:0471888893] +synonym: "area dorsalis telencephali, zona lateralis" EXACT [] +synonym: "lateral zone of D" EXACT [] +synonym: "lateral zone of dorsal telencephalic area" EXACT [] +synonym: "LP" BROAD ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23375746] +synonym: "medial pallium (everted brain)" RELATED [ISBN:0471888893] +synonym: "olfactory pallium" RELATED [ISBN:0471888893] +synonym: "piriform pallium" RELATED [ISBN:0471888893] +synonym: "proximal pallium (everted brain)" RELATED [ISBN:0471888893] +xref: DMBA:15956 +xref: TAO:0000391 +xref: ZFA:0000391 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000203 ! pallium + +[Term] +id: UBERON:0014742 +name: central nucleus of pallium +def: "A nucleus located in the dorsal pallium that is present in sharks, skates and rays and extends at some levels to the midline.." [ISBN:0471888893] +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0014740 ! dorsal pallium + +[Term] +id: UBERON:0014751 +name: P1 area of pallium (Myxiniformes) +def: "Most superficial of the areas of the pallium in the enlarged evaginated telencephalon of hagfishes." [ISBN:0471888893] +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000203 ! pallium + +[Term] +id: UBERON:0014752 +name: P2 area of pallium (Myxiniformes) +def: "Area directly deep to the P1 area of pallium in hagfishes." [ISBN:0471888893] +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: immediately_deep_to UBERON:0014751 ! P1 area of pallium (Myxiniformes) +relationship: part_of UBERON:0000203 ! pallium + +[Term] +id: UBERON:0014753 +name: P3 area of pallium (Myxiniformes) +def: "Area directly deep to the P2 area of pallium in hagfishes." [ISBN:0471888893] +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: immediately_deep_to UBERON:0014752 ! P2 area of pallium (Myxiniformes) +relationship: part_of UBERON:0000203 ! pallium + +[Term] +id: UBERON:0014754 +name: P4 area of pallium (Myxiniformes) +def: "Area directly deep to the P3 area of pallium in hagfishes." [ISBN:0471888893] +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: immediately_deep_to UBERON:0014753 ! P3 area of pallium (Myxiniformes) +relationship: part_of UBERON:0000203 ! pallium + +[Term] +id: UBERON:0014755 +name: P5 area of pallium (Myxiniformes) +def: "Most deep of the areas of the pallium in the enlarged evaginated telencephalon of hagfishes." [ISBN:0471888893] +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: immediately_deep_to UBERON:0014754 ! P4 area of pallium (Myxiniformes) +relationship: part_of UBERON:0000203 ! pallium + +[Term] +id: UBERON:0014756 +name: Wulst +def: "A nuclear complex in the avian telecephalon dorsal to the DVR. The Wulst has telencephalic circuitry similar to the DVR." [http://www.ncbi.nlm.nih.gov/pubmed/23027930] +is_a: UBERON:0007245 ! nuclear complex of neuraxis +is_a: UBERON:0011300 ! gray matter of telencephalon +relationship: part_of UBERON:0000203 ! pallium + +[Term] +id: UBERON:0014757 +name: hyperpallium apicale +def: "." [http://www.ncbi.nlm.nih.gov/pubmed/23027930] +synonym: "HA" RELATED ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23027930] +xref: BTO:0003402 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000203 ! pallium + +[Term] +id: UBERON:0014758 +name: interstitial part of hyperpallium apicale +def: "." [http://www.ncbi.nlm.nih.gov/pubmed/23027930] +synonym: "IHA" RELATED ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23027930] +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0014757 ! hyperpallium apicale + +[Term] +id: UBERON:0014759 +name: entopallium +def: "The major telecephalic thalamorecipient zone of the tectofugal visual system in Aves." [http://www.ncbi.nlm.nih.gov/pubmed/16041718] +synonym: "core region of ectostriatum" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/14681937] +synonym: "E" RELATED ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/16041718] +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000203 ! pallium + +[Term] +id: UBERON:0014760 +name: gustatory nucleus +def: "The gustatory nucleus is the enlarged rostral portion of the solitary nucleus, which receives taste afferents from the glossopharyngeal nerve and the intermediate nerve ( Carpenter-1983 )." [NeuroNames:1386] +synonym: "dorsal visceral gray" RELATED [NeuroNames:1386] +synonym: "gustatory gray" RELATED [NeuroNames:1386] +synonym: "gustatory nucleus" RELATED [NeuroNames:1386] +xref: Gustatory:nucleus +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1386 +is_a: UBERON:0009050 ! nucleus of solitary tract +relationship: part_of UBERON:0001033 ! gustatory system + +[Term] +id: UBERON:0014761 +name: spinal trigeminal tract +def: "Brainstem tract formed by the central processes of first-order, trigeminal ganglion neurons that extends from the caudal medulla to the midpons. This tract conveys nociceptive and thermal information from the face to second-order neurons in the spinal nucleus of the trigeminal complex." [BTO:0003701, http://www.sylvius.com/] +synonym: "descending root of V" RELATED [NeuroNames:1589] +synonym: "descending tract of trigeminal" RELATED [NeuroNames:1589] +synonym: "spinal root of trigeminal" RELATED [NeuroNames:1589] +synonym: "spinal tract of the trigeminal nerve" RELATED [NeuroNames:1589] +synonym: "spinal tract of trigeminal nerve" RELATED [NeuroNames:1589] +synonym: "spinal trigeminal tract" RELATED [NeuroNames:1589] +synonym: "spinal V tract" RELATED [NeuroNames:1589] +synonym: "tract of descending root of trigeminal" RELATED [NeuroNames:1589] +synonym: "tractus spinalis nervi trigeminalis" RELATED LATIN [NeuroNames:1589] +synonym: "tractus spinalis nervi trigemini" RELATED LATIN [NeuroNames:1589] +synonym: "trigeminospinal tract" RELATED [NeuroNames:1589] +xref: BAMS:sp5 +xref: BTO:0003701 +xref: DHBA:12792 +xref: DMBA:17797 +xref: FMA:75700 +xref: FMA:83851 +xref: HBA:265505650 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1589 +xref: MBA:794 +is_a: UBERON:0007702 ! tract of brain +relationship: part_of UBERON:0002298 {source="BTO"} ! brainstem + +[Term] +id: UBERON:0014762 +name: fused metapodial bones 2-4 +def: "An element formed from the fusion of metapodium bones 2, 3 and 4 (i.e. either metatarsals 2-4 or metacarpals 3-4)." [http://orcid.org/0000-0002-6601-2165] +synonym: "fused central metapodials" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "fused metapodials 2-4" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "metapodial 2+3+4" RELATED [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0013586 ! fused metapodial bones 3 and 4 +intersection_of: UBERON:0003821 ! metapodium bone +intersection_of: has_fused_element UBERON:0013582 ! metapodium bone 2 +intersection_of: has_fused_element UBERON:0013583 ! metapodium bone 3 +intersection_of: has_fused_element UBERON:0013584 ! metapodium bone 4 +relationship: has_fused_element UBERON:0013582 ! metapodium bone 2 +relationship: present_in_taxon NCBITaxon:51337 + +[Term] +id: UBERON:0014763 +name: fused metatarsal bones 2-4 +def: "An element formed from the fusion of metapodium bones 2, 3 and 4 in the pedal autopod." [http://orcid.org/0000-0002-6601-2165] +synonym: "cannon bone" RELATED [NCBITaxon:51337] +synonym: "fused central metatarsals" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "fused metatarsals 2-4" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "metatarsal 2+3+4" RELATED [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0013588 ! fused metatarsal bones 3 and 4 +is_a: UBERON:0014762 ! fused metapodial bones 2-4 +intersection_of: UBERON:0001448 ! metatarsal bone +intersection_of: has_fused_element UBERON:0003651 ! metatarsal bone of digit 2 +intersection_of: has_fused_element UBERON:0003652 ! metatarsal bone of digit 3 +intersection_of: has_fused_element UBERON:0003653 ! metatarsal bone of digit 4 +relationship: has_fused_element UBERON:0003651 ! metatarsal bone of digit 2 +relationship: present_in_taxon NCBITaxon:51337 + +[Term] +id: UBERON:0014764 +name: anatomical line along groove +def: "Anatomical line that delineates a furrow or depression in an organ or tissue." [https://github.com/obophenotype/human-developmental-anatomy-ontology/issues/4, ZFA:0001690] +subset: non_informative +synonym: "groove" RELATED [ZFA:0001690] +synonym: "line delineating groove" EXACT [] +xref: AAO:0010276 +xref: FMA:75037 +xref: HAO:0001525 +xref: TAO:0001838 +is_a: UBERON:0006800 ! anatomical line +intersection_of: UBERON:0006800 ! anatomical line +intersection_of: in_superficial_part_of UBERON:0006846 ! surface groove +relationship: in_superficial_part_of UBERON:0006846 ! surface groove +relationship: part_of UBERON:0006846 ! surface groove + +[Term] +id: UBERON:0014765 +name: crus of diaphragm +def: "The domain of the diaphragm that is located dorsally and attaches to the vertebrae and surrounds the esophagus and aorta." [http://www.ncbi.nlm.nih.gov/pubmed/23586979] +comment: Classification notes: May be considered an external sphincter[PMID:8224664] +synonym: "crura of the diaphragm" RELATED [http://en.wikipedia.org/wiki/Crus_of_diaphragm] +synonym: "crural diaphragm" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/23586979] +synonym: "crus of the diaphragm" RELATED [http://en.wikipedia.org/wiki/Crus_of_diaphragm] +synonym: "diaphragm crura" RELATED PLURAL [] +synonym: "diaphragmatic crura" RELATED [http://en.wikipedia.org/wiki/Crus_of_diaphragm] +xref: EHDAA2:0000597 +xref: EMAPA:17703 +xref: http://en.wikipedia.org/wiki/Crus_of_diaphragm +xref: http://www.snomedbrowser.com/Codes/Details/244668003 +xref: VHOG:0001546 +is_a: UBERON:0000063 ! organ subunit +relationship: attaches_to UBERON:0001130 ! vertebral column +relationship: attaches_to UBERON:0006670 ! central tendon of diaphragm +relationship: intersects_midsagittal_plane_of UBERON:0001103 {source="http://www.ncbi.nlm.nih.gov/pubmed/23586979"} ! diaphragm +relationship: part_of UBERON:0001103 {source="http://www.ncbi.nlm.nih.gov/pubmed/23586979"} ! diaphragm + +[Term] +id: UBERON:0014766 +name: right crus of diaphragm +def: "A crus of diaphragm that is in_the_right_side_of a diaphragm." [OBOL:automatic] +synonym: "crus dextrum (Diaphragma)" EXACT LATIN [FMA:58286, FMA:TA] +synonym: "crus dextrum diaphragmatis" EXACT LATIN [FMA:58286, FMA:TA] +synonym: "external sphincter of esophagus" EXACT [FMA:58286] +synonym: "right crus of diaphragm" EXACT [FMA:58286] +synonym: "right crus of lumbar part of diaphragm" EXACT [FMA:58286] +xref: FMA:58286 +xref: http://www.snomedbrowser.com/Codes/Details/362690009 +is_a: UBERON:0014765 ! crus of diaphragm +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0014765 ! crus of diaphragm +intersection_of: in_right_side_of UBERON:0001103 ! diaphragm +relationship: in_right_side_of UBERON:0001103 ! diaphragm + +[Term] +id: UBERON:0014767 +name: left crus of diaphragm +def: "A crus of diaphragm that is in_the_left_side_of a diaphragm." [OBOL:automatic] +synonym: "crus sinistrum (Diaphragma)" EXACT LATIN [FMA:58287, FMA:TA] +synonym: "crus sinistrum diaphragmatis" EXACT LATIN [FMA:58287, FMA:TA] +synonym: "left crus of diaphragm" EXACT [FMA:58287] +synonym: "left crus of lumbar part of diaphragm" EXACT [FMA:58287] +xref: FMA:58287 +xref: http://www.snomedbrowser.com/Codes/Details/244937004 +is_a: UBERON:0014765 ! crus of diaphragm +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0014765 ! crus of diaphragm +intersection_of: in_left_side_of UBERON:0001103 ! diaphragm +relationship: in_left_side_of UBERON:0001103 ! diaphragm + +[Term] +id: UBERON:0014768 +name: superior palpebral vein +def: "A blood vessel that drains from from an upper eyelid." [http://orcid.org/0000-0002-6601-2165] +synonym: "venae palpebrales superiores" RELATED LATIN [] +xref: FMA:50907 +is_a: UBERON:0014769 ! palpebral vein +intersection_of: UBERON:0014769 ! palpebral vein +intersection_of: drains UBERON:0001712 ! upper eyelid +relationship: drains UBERON:0001712 ! upper eyelid + +[Term] +id: UBERON:0014769 +name: palpebral vein +def: "A blood vessel that drains from from an eyelid." [http://orcid.org/0000-0002-6601-2165] +synonym: "palpebral veins" RELATED PLURAL [] +synonym: "venae palpebrales" RELATED LATIN [] +xref: FMA:51997 +xref: http://www.snomedbrowser.com/Codes/Details/152208004 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0003502 ! neck blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0001711 ! eyelid +relationship: drains UBERON:0001711 ! eyelid +relationship: part_of UBERON:0014686 ! angular vein +relationship: tributary_of UBERON:0014686 ! angular vein + +[Term] +id: UBERON:0014770 +name: palpebral artery +def: "An artery that supplies blood to an eyelid." [http://orcid.org/0000-0002-6601-2165] +xref: http://www.snomedbrowser.com/Codes/Details/148571007 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003496 ! head blood vessel +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0001711 ! eyelid +relationship: supplies UBERON:0001711 ! eyelid + +[Term] +id: UBERON:0014772 +name: lateral palpebral artery +def: "The lateral palpebral arteries are small arteries which supply the eyelid." [http://en.wikipedia.org/wiki/Lateral_palpebral_arteries] +synonym: "lateral palpebral branch of ophthalmic artery" EXACT [FMA:49940] +synonym: "lateral palpebral branches" RELATED [http://en.wikipedia.org/wiki/Lateral_palpebral_arteries] +xref: FMA:49940 +xref: http://en.wikipedia.org/wiki/Lateral_palpebral_arteries +xref: http://www.snomedbrowser.com/Codes/Details/369323008 +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0014770 ! palpebral artery +disjoint_from: UBERON:0014773 {source="lexical"} ! medial palpebral artery +relationship: branching_part_of UBERON:0001622 {source="FMA"} ! lacrimal artery +relationship: part_of UBERON:0001622 ! lacrimal artery + +[Term] +id: UBERON:0014773 +name: medial palpebral artery +def: "The medial palpebral arteries (internal palpebral arteries) are arteries of the head. They are two in number, superior and inferior, arise from the ophthalmic, opposite the pulley of the Obliquus superior." [http://en.wikipedia.org/wiki/Medial_palpebral_arteries] +synonym: "inferior palpebral artery" RELATED [http://en.wikipedia.org/wiki/Medial_palpebral_arteries] +synonym: "internal palpebral arteries" RELATED [http://en.wikipedia.org/wiki/Medial_palpebral_arteries] +synonym: "internal palpebral artery" RELATED [http://en.wikipedia.org/wiki/Medial_palpebral_arteries] +synonym: "medial palpebral branch of ophthalmic artery" EXACT [FMA:50012] +synonym: "superior palpebral" RELATED [http://en.wikipedia.org/wiki/Medial_palpebral_arteries] +synonym: "superior palpebral artery" RELATED [http://en.wikipedia.org/wiki/Medial_palpebral_arteries] +xref: FMA:50012 +xref: http://en.wikipedia.org/wiki/Medial_palpebral_arteries +xref: http://www.snomedbrowser.com/Codes/Details/369331003 +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0014770 ! palpebral artery +relationship: branching_part_of UBERON:0001619 {source="FMA"} ! ophthalmic artery +relationship: part_of UBERON:0001619 ! ophthalmic artery + +[Term] +id: UBERON:0014775 +name: prosomere +def: "A neuromere that is part of the presumptive forebrain" [http://orcid.org/0000-0002-6601-2165] +synonym: "forebrain neuromere" EXACT [] +synonym: "forebrain segment" BROAD [] +synonym: "future prosencephalon" RELATED [] +synonym: "segment of forebrain" BROAD [] +xref: FMA:61996 +is_a: UBERON:0004731 ! neuromere +intersection_of: UBERON:0004731 ! neuromere +intersection_of: part_of UBERON:0006240 ! future forebrain +relationship: part_of UBERON:0006240 ! future forebrain + +[Term] +id: UBERON:0014776 +name: midbrain neuromere +def: "A neuromere that is part of the presumptive midbrain" [http://orcid.org/0000-0002-6601-2165] +synonym: "future mesencephalon" RELATED [] +synonym: "mesomere" BROAD [] +synonym: "mesomere group" RELATED [EHDAA2:0004352] +synonym: "mesomere of nervous system" EXACT [] +synonym: "midbrain segment" BROAD [] +synonym: "neuromere of mesomere group" EXACT [] +synonym: "segment of midbrain" BROAD [] +xref: EHDAA2:0004352 +xref: FMA:61997 +is_a: UBERON:0004731 ! neuromere +intersection_of: UBERON:0004731 ! neuromere +intersection_of: part_of UBERON:0009616 ! presumptive midbrain +relationship: part_of UBERON:0009616 ! presumptive midbrain + +[Term] +id: UBERON:0014777 +name: spinal neuromere +def: "A neuromere that is part of the presumptive spinal cord" [http://orcid.org/0000-0002-6601-2165] +synonym: "spinal cord metameric segment" EXACT [] +synonym: "spinal cord segment" RELATED [TAO:0001332] +synonym: "spinal neuromeres" EXACT PLURAL [TAO:0001332] +xref: TAO:0001332 +xref: ZFA:0001332 +is_a: UBERON:0004731 ! neuromere +intersection_of: UBERON:0004731 ! neuromere +intersection_of: part_of UBERON:0006241 ! future spinal cord +relationship: part_of UBERON:0006241 ! future spinal cord + +[Term] +id: UBERON:0014778 +name: cell group +def: "A group of cells that may not be contained within macroscopic anatomical boundaries, e.g., A9 dopaminergic cell group; massa intercalata of the amygdala (CUMBO)" [NLX:532] +subset: cumbo +subset: upper_level +synonym: "group of cells" EXACT [] +is_a: UBERON:0000061 ! anatomical structure + +[Term] +id: UBERON:0014779 +name: liver reticuloendothelial system +def: "A reticuloendothelial system that is part of a liver." [OBOL:automatic] +xref: BTO:0000831 +is_a: UBERON:0000363 ! reticuloendothelial system +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000363 ! reticuloendothelial system +intersection_of: part_of UBERON:0002107 ! liver +relationship: part_of UBERON:0002107 ! liver + +[Term] +id: UBERON:0014780 +name: palatine aponeurosis +def: "Attached to the posterior border of the hard palate is a thin, firm fibrous lamella called the palatine aponeurosis, which supports the muscles and gives strength to the soft palate. It is thicker above than below, where it becomes very thin and difficult to define. Laterally it is continuous with the pharyngeal aponeurosis. It serves as the insertion for the Tensor veli palatini and Levator veli palatini, and the origin for the Musculus uvulae, Palatopharyngeus, and Palatoglossus. It provides support for the soft palate." [http://en.wikipedia.org/wiki/Palatine_aponeurosis] +synonym: "aponeurosis of tensor veli palatini" EXACT [FMA:49429] +synonym: "aponeurosis palatina" EXACT [http://en.wikipedia.org/wiki/Palatine_aponeurosis] +xref: FMA:49429 +xref: Palatine:aponeurosis +is_a: UBERON:0006614 ! aponeurosis +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0006614 ! aponeurosis +intersection_of: part_of UBERON:0001733 ! soft palate +relationship: part_of UBERON:0001733 ! soft palate + +[Term] +id: UBERON:0014781 +name: stomodeal ectoderm +xref: BTO:0004224 +is_a: UBERON:0000483 ! epithelium +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0000930 ! stomodeum + +[Term] +id: UBERON:0014782 +name: allantois of embryonic urinary system +comment: remnant of allantois in embryo +synonym: "allantois" RELATED [EHDAA2:0000113] +xref: EHDAA2:0000113 +xref: EMAPA:28547 +is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure +relationship: develops_from UBERON:0004340 {source="EHDAA2"} ! allantois +relationship: part_of UBERON:0000922 ! embryo +relationship: part_of UBERON:0001008 {source="EHDAA2"} ! renal system +relationship: part_of UBERON:0012361 {source="EHDAA2"} ! internal anal region + +[Term] +id: UBERON:0014783 +name: cloacal muscle +def: "Any muscle organ that is part of a cloaca." [OBOL:automatic] +is_a: UBERON:0001630 ! muscle organ +is_a: UBERON:0013765 ! digestive system element +intersection_of: UBERON:0001630 ! muscle organ +intersection_of: part_of UBERON:0000162 ! cloaca +relationship: part_of UBERON:0000162 ! cloaca + +[Term] +id: UBERON:0014784 +name: transverse cloacal muscle +def: "a very prominent superficial muscle and with its almost transverse course it forms the boundary between the abdomen and the tail." [https://doi.org/10.1242/dev.01545] +synonym: "m. transversus cloacae" EXACT [https://doi.org/10.1242/dev.01545] +synonym: "musculus transversus cloacae" EXACT [https://doi.org/10.1242/dev.01545] +is_a: UBERON:0014783 ! cloacal muscle + +[Term] +id: UBERON:0014785 +name: levator cloacae +def: "a long narrow muscle arising from the underside of feather bulge of the lateral rectrices, inserting near the midline of the cloacal tubercle - phallus." [https://doi.org/10.1242/dev.01545] +synonym: "m. retractor phalli caudalis" EXACT [https://doi.org/10.1242/dev.01545] +synonym: "musculus levator cloacae" EXACT [https://doi.org/10.1242/dev.01545] +synonym: "musculus retractor phalli caudalis" EXACT [https://doi.org/10.1242/dev.01545] +is_a: UBERON:0014783 ! cloacal muscle + +[Term] +id: UBERON:0014786 +name: extraembryonic umbilical vein +def: "Extraembryonic part of the vein passing through the umbilical cord to the fetus and returning the purified and nutrient blood from the placenta." [VHOG:0000015] +synonym: "extraembryonic umbilical vein" EXACT [VHOG:0000015] +xref: VHOG:0000015 +is_a: UBERON:0001638 ! vein +relationship: develops_from UBERON:0011921 {source="EHDAA2"} ! connecting stalk blood islands +relationship: part_of UBERON:0002066 ! umbilical vein +relationship: part_of UBERON:0007807 {source="EHDAA2"} ! connecting stalk vasculature +relationship: part_of UBERON:0014699 {source="EHDAA2"} ! extraembryonic venous system + +[Term] +id: UBERON:0014787 +name: left extraembryonic umbilical vein +def: "A extraembryonic umbilical vein that is in_the_left_side_of a multicellular organism." [OBOL:automatic] +synonym: "extraembryonic umbilical vein left" EXACT [EHDAA2:0000938] +xref: EHDAA2:0000938 +is_a: UBERON:0014786 ! extraembryonic umbilical vein +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0014786 ! extraembryonic umbilical vein +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0014788 +name: right extraembryonic umbilical vein +def: "A extraembryonic umbilical vein that is in_the_right_side_of a multicellular organism." [OBOL:automatic] +synonym: "extraembryonic umbilical vein right" EXACT [EHDAA2:0001722] +xref: EHDAA2:0001722 +is_a: UBERON:0014786 ! extraembryonic umbilical vein +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0014786 ! extraembryonic umbilical vein +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: in_right_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0014789 +name: embryo portion of umbilical vein +synonym: "embryonic umbilical vein" EXACT [VHOG:0000400] +xref: VHOG:0000400 +is_a: UBERON:0001638 ! vein +relationship: part_of UBERON:0002066 ! umbilical vein + +[Term] +id: UBERON:0014790 +name: lingual septum +def: "The lingual septum consists of a vertical layer of fibrous tissue, extending throughout the entire length of the median plane of the tongue, though not quite reaching the dorsum. It is thicker behind than in front, and occasionally contains a small fibrocartilage, about 6 mm. in length. It is well displayed by making a vertical section across the organ." [http://en.wikipedia.org/wiki/Lingual_septum] +synonym: "median fibrous septum" RELATED [http://en.wikipedia.org/wiki/Lingual_septum] +synonym: "septum of tongue" EXACT [FMA:54813] +synonym: "septum of tongue" RELATED [http://en.wikipedia.org/wiki/Lingual_septum] +synonym: "tongue septum" RELATED [http://en.wikipedia.org/wiki/Lingual_septum] +xref: EMAPA:18274 +xref: FMA:54813 +xref: http://www.snomedbrowser.com/Codes/Details/368727001 +xref: Lingual:septum +is_a: UBERON:0003037 ! septum +intersection_of: UBERON:0003037 ! septum +intersection_of: part_of UBERON:0001723 ! tongue +relationship: part_of UBERON:0001723 ! tongue + +[Term] +id: UBERON:0014791 +name: musculature of forelimb stylopod +def: "Any collection of muscles that is part of the forelimb stylopod region [Automatically generated definition]." [OBOL:automatic] +synonym: "arm musculature" RELATED INCONSISTENT [FMA:50202] +synonym: "muscle group of arm" RELATED INCONSISTENT [FMA:50202] +synonym: "musculature of arm" RELATED INCONSISTENT [FMA:50202] +synonym: "set of muscles of arm" RELATED INCONSISTENT [FMA:50202] +xref: FMA:50202 +is_a: UBERON:0004474 ! musculature of arm +intersection_of: UBERON:0001015 ! musculature +intersection_of: part_of UBERON:0003822 ! forelimb stylopod +relationship: part_of UBERON:0003822 ! forelimb stylopod + +[Term] +id: UBERON:0014792 +name: musculature of pelvic complex +def: "Any collection of muscles that is part of a pelvic complex. The pelvic complex comprises the pelvic girdle and the associated limb or fin." [OBOL:automatic] +synonym: "muscles of lower limb" NARROW [FMA:71297] +synonym: "musculature of lower limb" NARROW [FMA:71297] +synonym: "musculi membri inferioris" NARROW [FMA:TA] +xref: EMAPA:37864 {source="MA:th"} +xref: FMA:71297 +is_a: UBERON:0001015 ! musculature +intersection_of: UBERON:0001015 ! musculature +intersection_of: part_of UBERON:0010709 ! pelvic complex +relationship: part_of UBERON:0010709 ! pelvic complex + +[Term] +id: UBERON:0014793 +name: musculature of pectoral complex +def: "Any collection of muscles that is part of a pectoral complex. The pectoral complex comprises the pectoral girdle and the associated limb or fin." [OBOL:automatic] +synonym: "muscles of upper limb" NARROW [FMA:71296] +synonym: "musculature of upper limb" NARROW [FMA:71296] +synonym: "musculi membri superioris" NARROW [FMA:TA] +synonym: "set of muscles of upper limb" NARROW [FMA:71296] +synonym: "upper limb musculature" NARROW [FMA:71296] +xref: EMAPA:37861 {source="MA:th"} +xref: FMA:71296 +is_a: UBERON:0001015 ! musculature +intersection_of: UBERON:0001015 ! musculature +intersection_of: part_of UBERON:0010708 ! pectoral complex +relationship: part_of UBERON:0010708 ! pectoral complex + +[Term] +id: UBERON:0014794 +name: pectoral appendage muscle +def: "Any muscle organ that is part of a pectoral appendage (forelimb or pectoral fin)." [OBOL:automatic] +is_a: UBERON:0010891 ! pectoral complex muscle +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0004710 ! pectoral appendage +relationship: part_of UBERON:0007269 {source="prolog"} ! pectoral appendage musculature + +[Term] +id: UBERON:0014795 +name: pelvic appendage muscle +def: "Any muscle organ that is part of a pelvic appendage (hindlimb or pelvic fin)." [OBOL:automatic] +is_a: UBERON:0010890 ! pelvic complex muscle +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: part_of UBERON:0004709 ! pelvic appendage +relationship: part_of UBERON:0007270 {source="prolog"} ! pelvic appendage musculature + +[Term] +id: UBERON:0014796 +name: common tendinous ring +def: "A ring of fibrous tissue surrounding the optic nerve at its entrance at the apex of the orbit." [http://en.wikipedia.org/wiki/Annulus_of_Zinn] +synonym: "annulus of Zinn" RELATED [http://en.wikipedia.org/wiki/Annulus_of_Zinn] +synonym: "annulus tendineus communis" RELATED [http://en.wikipedia.org/wiki/Annulus_of_Zinn] +synonym: "anulus of Zinn" EXACT [FMA:49071] +synonym: "anulus tendineus" RELATED [http://en.wikipedia.org/wiki/Annulus_of_Zinn] +synonym: "anulus tendineus communis" EXACT [FMA:TA] +synonym: "anulus tendineus communis" RELATED [http://en.wikipedia.org/wiki/Annulus_of_Zinn] +synonym: "common annular tendon" EXACT [FMA:49071] +synonym: "common anular tendon" EXACT [FMA:49071] +synonym: "common tendinous ring" RELATED [http://en.wikipedia.org/wiki/Annulus_of_Zinn] +synonym: "ligament of Zinn" RELATED [http://en.wikipedia.org/wiki/Annulus_of_Zinn] +synonym: "tendon of Zinn" RELATED [http://en.wikipedia.org/wiki/Annulus_of_Zinn] +xref: FMA:49071 +xref: http://en.wikipedia.org/wiki/Annulus_of_Zinn +is_a: UBERON:0000481 ! multi-tissue structure +relationship: part_of UBERON:0004088 ! orbital region +relationship: surrounds UBERON:0000941 ! cranial nerve II + +[Term] +id: UBERON:0014797 +name: hypobranchial group muscle +def: "A jaw muscle that arises from trunk somites and is innervated by spinal nerves." [ISBN:0073040584] +is_a: UBERON:0001630 ! muscle organ +relationship: develops_from UBERON:0005598 {source="ISBN:0073040584"} ! trunk somite +relationship: innervated_by UBERON:0001780 {source="ISBN:0073040584"} ! spinal nerve +relationship: seeAlso UBERON:2002200 {comment="We follow Kardong in having a general grouping for jaw musculature from trunk somites - we call this hypobranchial group muscle to avoid a clash with the more specific teleost muscle"} ! hypobranchial muscle + +[Term] +id: UBERON:0014798 +name: clavotrapezius muscle +def: "The most anterior of the trapezius muscles, found in felids, it is also the largest. Its fibers run obliquely to the ventral surface. Its origin is the superior nuchal line and median dorsal line and its insertion is the clavicle. Its action is to draw the clavicle dorsally and towards the head." [http://en.wikipedia.org/wiki/Cat_anatomy#Clavotrapezius] +synonym: "clavotrapezius" EXACT [] +is_a: UBERON:0002380 ! trapezius muscle +relationship: has_muscle_insertion UBERON:0001105 ! clavicle bone +relationship: has_muscle_origin UBERON:0014803 ! superior nuchal line attachment site +relationship: present_in_taxon NCBITaxon:9681 + +[Term] +id: UBERON:0014799 +name: acromiotrapezius muscle +def: "Acromiotrapezius is the middle trapezius muscle. It covers the dorsal and lateral surfaces of the scapula. Its origin is the neural spines of the cervical vertebrae and its insertion is in the metacromion process and fascia of the clavotrapezius. Its action is to draw the scapula to the dorsal, and hold the two scapula together." [http://en.wikipedia.org/wiki/Cat_anatomy#Acromiotrapezius] +synonym: "acromiotrapezius" EXACT [] +is_a: UBERON:0002380 ! trapezius muscle +relationship: has_muscle_insertion UBERON:0014409 ! metacromion +relationship: present_in_taxon NCBITaxon:9681 + +[Term] +id: UBERON:0014800 +name: spinotrapezius muscle +def: "Spinotrapezius, also called thoracic trapezius, is the most posterior of the three trapezius muscles. It is triangular shaped. Posterior to the acromiotrapezius and overlaps latissimus dorsi on the front. Its origin is the neural spines of the thoracic vertebrae and its insertion is the scapular fascia. Its action is to draw the scapula to the dorsal and caudal regions." [http://en.wikipedia.org/wiki/Cat_anatomy#Spinotrapezius] +synonym: "spinotrapezius" EXACT [] +synonym: "thoracic trapezius" EXACT [] +synonym: "thoracic trapezius muscle" EXACT [] +is_a: UBERON:0002380 ! trapezius muscle +is_a: UBERON:0034908 ! scapular muscle +relationship: has_muscle_insertion UBERON:0006849 ! scapula +relationship: present_in_taxon NCBITaxon:9681 + +[Term] +id: UBERON:0014801 +name: nuchal line attachment site +def: "Any of the four curved lines on the external surface of the occipital bone that serves as an attachment site for a muscle." [http://en.wikipedia.org/wiki/Nuchal_lines, http://orcid.org/0000-0002-6601-2165] +synonym: "nuchal line" RELATED [http://en.wikipedia.org/wiki/Nuchal_lines] +xref: Nuchal:lines +is_a: UBERON:4200047 ! attachment site +relationship: part_of UBERON:0001676 ! occipital bone + +[Term] +id: UBERON:0014802 +name: highest nuchal line attachment site +def: "Of the nuchal lines, the upper, often faintly marked, is named the highest nuchal line, but is sometimes referred to as the Mempin Line, and to it the galea aponeurotica is attached." [http://en.wikipedia.org/wiki/Nuchal_lines] +synonym: "highest nuchal line" RELATED [FMA:53106] +synonym: "Mempin line" RELATED [http://en.wikipedia.org/wiki/Nuchal_lines] +xref: FMA:53106 +is_a: UBERON:0014801 ! nuchal line attachment site + +[Term] +id: UBERON:0014803 +name: superior nuchal line attachment site +def: "Of the nuchal lines, the one below the highest nuchal line is the superior nuchal line. To it is attached the Occipitalis muscle, the Splenius capitis muscle, the trapezius muscle, and the Sternocleidomastoid muscle." [http://en.wikipedia.org/wiki/Nuchal_lines] +synonym: "superior nuchal line" RELATED [FMA:53108] +xref: FMA:53108 +is_a: UBERON:0014801 ! nuchal line attachment site + +[Term] +id: UBERON:0014804 +name: median nuchal line attachment site +def: "Of the nuchal lines, the one that runs from the external occipital protuberance a ridge or crest is the median nuchal line, often faintly marked, descends to the foramen magnum, and affords attachment to the ligamentum nuchae." [http://en.wikipedia.org/wiki/Nuchal_lines] +synonym: "inferior nuchal line" RELATED [FMA:53111] +xref: FMA:53111 +is_a: UBERON:0014801 ! nuchal line attachment site + +[Term] +id: UBERON:0014805 +name: inferior nuchal line attachment site +def: "Of the nuchal lines, the one running from the middle of the median line is the inferior nuchal line. Attached are the Obliquus capitis superior muscle, Rectus capitis posterior major muscle, and Rectus capitis posterior minor muscle." [http://en.wikipedia.org/wiki/Nuchal_lines] +synonym: "inferior nuchal line" RELATED [FMA:53111] +xref: FMA:53111 +is_a: UBERON:0014801 ! nuchal line attachment site + +[Term] +id: UBERON:0014835 +name: serratus muscle +synonym: "serratus" BROAD [] +xref: EMAPA:35769 +xref: http://en.wikipedia.org/wiki/Serratus +xref: MA:0003025 +is_a: UBERON:0001630 {source="MA"} ! muscle organ + +[Term] +id: UBERON:0014836 +name: levator arcuum muscle +synonym: "levator arcuum" EXACT [] +synonym: "levatores arcuum" EXACT [] +is_a: UBERON:0004164 {source="ISBN:0073040584"} ! branchiomeric muscle + +[Term] +id: UBERON:0014837 +name: pectoantebrachialis +def: "The most superficial of pectoral muscles, found in some mammals" [ISBN:0073040584] +is_a: UBERON:0001495 {source="ISBN:0073040584"} ! pectoral muscle +relationship: superficial_to UBERON:0002381 ! pectoralis major + +[Term] +id: UBERON:0014838 +name: xiphihumeralis +def: "The most deep of pectoral muscles, found in some mammals" [ISBN:0073040584] +is_a: UBERON:0001495 {source="ISBN:0073040584"} ! pectoral muscle +relationship: deep_to UBERON:0001100 ! pectoralis minor + +[Term] +id: UBERON:0014840 +name: supracoracoideus muscle +def: "A muscle that is important to the body support of limbed reptiles, underlies the front part of the pectoral muscle, arises from the coracoid, and passes to the underpart of the humerus" [http://www.merriam-webster.com/dictionary/supracoracoideus] +comment: Ventral group[Kardong] +is_a: UBERON:0001482 ! muscle of shoulder +is_a: UBERON:0008196 ! muscle of pectoral girdle +relationship: has_muscle_insertion UBERON:0000976 ! humerus +relationship: has_muscle_origin UBERON:0004743 ! coracoid bone + +[Term] +id: UBERON:0014842 +name: puboischiofemoralis muscle +def: "A dorsal muscle of lower tetrapods." [ISBN:0073040584] +is_a: UBERON:0014892 ! skeletal muscle organ +relationship: has_muscle_insertion UBERON:0000981 {source="ISBN:0073040584"} ! femur +relationship: has_muscle_origin UBERON:0007832 {source="ISBN:0073040584"} ! pelvic girdle skeleton + +[Term] +id: UBERON:0014847 +name: vastus intermedius +def: "The Vastus intermedius (Cruraeus) arises from the front and lateral surfaces of the body of the femur in its upper two-thirds, sitting under Rectus Femoris and from the lower part of the lateral intermuscular septum. Its fibers end in a superficial aponeurosis, which forms the deep part of the Quadriceps femoris tendon. The Vastus medialis and Vastus intermedius appear to be inseparably united, but when the Rectus femoris has been reflected a narrow interval will be observed extending upward from the medial border of the patella between the two muscles, and the separation may be continued as far as the lower part of the intertrochanteric line, where, however, the two muscles are frequently continuous." [http://en.wikipedia.org/wiki/Vastus_intermedius_muscle] +synonym: "cruraeus" RELATED [http://en.wikipedia.org/wiki/Vastus_intermedius_muscle] +synonym: "crureus" RELATED [BTO:0002542] +synonym: "intermediate great muscle" RELATED [BTO:0002542] +synonym: "intermediate vastus muscle" RELATED [BTO:0002542] +synonym: "musculus vastus intermedius" RELATED [BTO:0002542] +synonym: "vastus intermedialis" RELATED [http://en.wikipedia.org/wiki/Vastus_intermedius_muscle] +synonym: "vastus intermedius" RELATED [http://en.wikipedia.org/wiki/Vastus_intermedius_muscle] +xref: BTO:0002542 +xref: EMAPA:36243 +xref: FMA:22433 +xref: http://en.wikipedia.org/wiki/Vastus_intermedius_muscle +xref: http://www.snomedbrowser.com/Codes/Details/181682001 +is_a: UBERON:0001377 ! quadriceps femoris +relationship: has_muscle_insertion UBERON:0014848 ! tendon of quadriceps femoris +relationship: has_muscle_origin UBERON:0000981 {source="dbpedia"} ! femur + +[Term] +id: UBERON:0014848 +name: tendon of quadriceps femoris +synonym: "common quadriceps femoris tendon" RELATED [FMA:46900] +synonym: "common quadriceps tendon" RELATED [FMA:46900] +synonym: "common tendon of quadriceps femoris" EXACT [] +synonym: "common tendon of quadriceps femoris muscle complex" RELATED [FMA:46900] +synonym: "quadriceps femoris tendon" EXACT [FMA:46900] +synonym: "quadriceps tendon" EXACT [FMA:46900] +xref: FMA:46900 +xref: http://www.snomedbrowser.com/Codes/Details/245175008 +is_a: UBERON:0000043 {source="FMA"} ! tendon +is_a: UBERON:0003589 ! hindlimb connective tissue +relationship: part_of UBERON:0001377 {source="FMA"} ! quadriceps femoris + +[Term] +id: UBERON:0014849 +name: hemotrichorial placental membrane +def: "A placental membrane that consists of three trophoblast cell layers." [http://orcid.org/0000-0002-6601-2165, MP:0012126] +synonym: "placenta hemotrichorial membrane" EXACT [MP:0012126] +xref: EMAPA:37879 {source="MA:th"} +is_a: UBERON:0009002 ! placental membrane +disjoint_from: UBERON:0014850 ! hemomonochorial placental membrane +relationship: present_in_taxon NCBITaxon:9989 {source="MP"} + +[Term] +id: UBERON:0014850 +name: hemomonochorial placental membrane +def: "A placental membrane that consists of a single layer of syncytiotrophoblast at term." [http://orcid.org/0000-0002-6601-2165, MP:0012126] +synonym: "placenta hemomonochorial membrane" EXACT [MP:0012126] +is_a: UBERON:0009002 ! placental membrane +relationship: has_part UBERON:0000371 ! syncytiotrophoblast +relationship: present_in_taxon NCBITaxon:9606 {source="MP"} + +[Term] +id: UBERON:0014851 +name: chorda tendinea of left ventricle +def: "Chorda tendinea which is attached to the leaflet of mitral valve and is continuous with the endocardium of papillary muscle of left ventricle." [FMA:9349] +subset: pheno_slim +xref: FMA:9349 +is_a: UBERON:0005994 ! chorda tendineae +intersection_of: UBERON:0005994 ! chorda tendineae +intersection_of: part_of UBERON:0002084 ! heart left ventricle +relationship: part_of UBERON:0002084 ! heart left ventricle + +[Term] +id: UBERON:0014852 +name: chorda tendinea of right ventricle +def: "Chorda tendinea which is attached to the leaflet of tricuspid valve and is continuous with the endocardium of papillary muscle of right ventricle." [FMA:9300] +subset: pheno_slim +xref: FMA:9300 +is_a: UBERON:0005994 ! chorda tendineae +intersection_of: UBERON:0005994 ! chorda tendineae +intersection_of: part_of UBERON:0002080 ! heart right ventricle +relationship: part_of UBERON:0002080 ! heart right ventricle + +[Term] +id: UBERON:0014853 +name: commissural leaflet of mitral valve +def: "Leaflet of mitral valve which is attached to the commissural chorda tendinea of left ventricle." [FMA:223086] +synonym: "commissural cusp of mitral valve" EXACT [FMA:223086] +xref: FMA:223086 +is_a: UBERON:0007151 {source="FMA"} ! mitral valve leaflet + +[Term] +id: UBERON:0014854 +name: anterior leaflet of mitral valve +def: "Leaflet of mitral valve which is attached to the anterior head of the posterior papillary muscle of left ventricle through the chorda tendinea of the left ventricle." [FMA:7242] +synonym: "anterior cusp of mitral valve" EXACT [FMA:7242] +synonym: "anterior leaflet" BROAD [BGEE:ANiknejad] +synonym: "anterior mitral leaflet" EXACT [FMA:7242] +synonym: "anteromedial leaflet" BROAD [BGEE:ANiknejad] +synonym: "anteromedial leaflet of mitral valve" EXACT [FMA:7242] +synonym: "aortic leaflet of mitral valve" EXACT [FMA:7242] +synonym: "aortic leaflet of the left-sided mitral valve" EXACT [BGEE:ANiknejad] +synonym: "cuspis anterior valvae atrioventricularis sinistri" EXACT LATIN [FMA:7242, FMA:TA] +synonym: "greater leaflet of mitral valve" EXACT [FMA:7242] +synonym: "septal leaflet of mitral valve" EXACT [FMA:7242] +xref: FMA:7242 +xref: http://www.snomedbrowser.com/Codes/Details/244354001 +is_a: UBERON:0007151 {source="FMA"} ! mitral valve leaflet +disjoint_from: UBERON:0014855 {source="lexical"} ! posterior leaflet of mitral valve + +[Term] +id: UBERON:0014855 +name: posterior leaflet of mitral valve +def: "Leaflet of mitral valve which is attached to the posterior head of the lateral papillary muscle of left ventricle through the chorda tendinea of the left ventricle." [FMA:7243] +synonym: "cuspis posterior (valva mitralis)" EXACT LATIN [FMA:7243, FMA:TA] +synonym: "cuspis posterior valvae atrioventricularis sinistri" EXACT LATIN [FMA:7243, FMA:TA] +synonym: "mural leaflet of mitral valve" EXACT [FMA:7243] +synonym: "posterior cusp of mitral valve" EXACT [FMA:7243] +synonym: "posterior mitral leaflet" EXACT [FMA:7243] +synonym: "posterolateral leaflet of mitral valve" EXACT [FMA:7243] +synonym: "smaller leaflet of mitral valve" EXACT [FMA:7243] +synonym: "ventricular leaflet of mitral valve" EXACT [FMA:7243] +xref: FMA:7243 +xref: http://www.snomedbrowser.com/Codes/Details/244355000 +is_a: UBERON:0007151 {source="FMA"} ! mitral valve leaflet + +[Term] +id: UBERON:0014856 +name: cysticercus stage +def: "The larval form of any of the Taenia tapeworms." [BTO:0003168, http://www.medterms.com/] +synonym: "cysticercus" EXACT [BTO:0003168] +xref: BTO:0003168 +xref: MESH:B01.500.736.215.895.286 +is_a: UBERON:0000105 ! life cycle stage +relationship: part_of UBERON:0000069 ! larval stage + +[Term] +id: UBERON:0014857 +name: zoea stage +def: "A crustacean larval stage characterised by the use of the thoracic appendages for swimming." [http://en.wikipedia.org/wiki/Crustacean_larvae#Zoea] +synonym: "zoea" RELATED [] +is_a: UBERON:0000105 ! life cycle stage +relationship: part_of UBERON:0018378 ! crustacean larval stage +relationship: preceded_by UBERON:0014406 ! nauplius stage + +[Term] +id: UBERON:0014858 +name: crustacean post-larval stage +def: "A crustacean larval stage characterised by the use of abdominal appendages (pleopods) for propulsion." [http://en.wikipedia.org/wiki/Crustacean_larvae#Post-larval] +synonym: "glaucothoe stage (hermit crab)" NARROW [] +synonym: "parva stage (shrimp)" NARROW [] +synonym: "post-larva" RELATED [] +synonym: "post-larval" RELATED [] +synonym: "post-larval stage" RELATED [] +synonym: "postlarva" RELATED [] +xref: BTO:0002655 +is_a: UBERON:0000105 ! life cycle stage +relationship: part_of UBERON:0018378 ! crustacean larval stage + +[Term] +id: UBERON:0014859 +name: megalopa stage +def: "The crustacean post-larval stage of a crab" [http://orcid.org/0000-0002-6601-2165] +synonym: "megalopa" RELATED [] +is_a: UBERON:0014858 ! crustacean post-larval stage + +[Term] +id: UBERON:0014860 +name: copepodite stage +def: "A development stage of copepods which follows the nauplius stage. It is segmented with more than 3 pairs of appendages" [http://www.encyclo.co.uk/define/Copepodite] +synonym: "copepodite" RELATED [] +is_a: UBERON:0000105 ! life cycle stage +relationship: part_of UBERON:0018378 ! crustacean larval stage +relationship: preceded_by UBERON:0014406 ! nauplius stage + +[Term] +id: UBERON:0014861 +name: glaucothoe stage +def: "A developmental stage in a hermit crab that has completed the swimming larval stages." [http://www.encyclo.co.uk/define/Copepodite] +synonym: "glaucothoe" RELATED [] +is_a: UBERON:0000105 ! life cycle stage +relationship: part_of UBERON:0018378 ! crustacean larval stage + +[Term] +id: UBERON:0014862 +name: trochophore stage +def: "A larval stage of a trochozoan in which the organism is in free-swimming planktonic form with several bands of cilia[WP,modified]." [http://en.wikipedia.org/wiki/Trochophore] +synonym: "trochophore" RELATED [] +synonym: "trocophore" RELATED [] +xref: http://en.wikipedia.org/wiki/Trochophore +is_a: UBERON:0000105 ! life cycle stage +relationship: part_of UBERON:0000069 ! larval stage + +[Term] +id: UBERON:0014863 +name: veliger stage +def: "The characteristic larval stage of the gastropod, bivalve and scaphopod taxonomic classes. It is produced following either the embryonic or trochophore larval stage of development" [http://en.wikipedia.org/wiki/Veliger] +synonym: "veliger" RELATED [] +xref: http://en.wikipedia.org/wiki/Veliger +is_a: UBERON:0000105 ! life cycle stage +relationship: part_of UBERON:0000069 ! larval stage + +[Term] +id: UBERON:0014864 +name: caterpillar stage +def: "The larval stage of members of the order Lepidoptera." [http://en.wikipedia.org/wiki/Caterpillar] +synonym: "caterpillar" RELATED [] +xref: http://en.wikipedia.org/wiki/Caterpillar +is_a: UBERON:0000069 ! larval stage + +[Term] +id: UBERON:0014870 +name: inferior orbital fissure +def: "The orbital fissure that is situated inferiorly between the greater wing of the sphenoid bone and the maxilla" [http://www.merriam-webster.com/medical/orbital%20fissure] +synonym: "infraorbital fissure" RELATED [] +synonym: "sphenomaxillary fissure" RELATED [] +xref: FMA:54802 +xref: http://en.wikipedia.org/wiki/Inferior_orbital_fissure +xref: http://www.snomedbrowser.com/Codes/Details/280560007 +is_a: UBERON:0006271 ! orbital fissure +intersection_of: UBERON:0006271 ! orbital fissure +intersection_of: connects UBERON:0002397 ! maxilla +intersection_of: connects UBERON:0006721 ! alisphenoid bone +relationship: connects UBERON:0002397 ! maxilla +relationship: connects UBERON:0006721 ! alisphenoid bone + +[Term] +id: UBERON:0014871 +name: distal epiphysis of distal phalanx of pedal digit 1 +def: "A distal epiphysis that is part of a distal phalanx of pedal digit 1." [OBOL:automatic] +synonym: "distal end of distal phalanx of big toe" EXACT [FMA:33036] +synonym: "distal epiphysis of distal phalanx of big toe" EXACT [FMA:33036] +synonym: "distal epiphysis of distal phalanx of pedal digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "head of distal phalanx of big toe" EXACT [FMA:33036] +synonym: "head of distal phalanx of first digit of foot" EXACT [FMA:33036] +synonym: "head of distal phalanx of great toe" EXACT [FMA:33036] +synonym: "ungual tuberosity of distal phalanx of big toe" RELATED [FMA:33036] +xref: FMA:33036 +is_a: UBERON:0014876 ! distal epiphysis of distal phalanx of pedal digit +intersection_of: UBERON:0004379 ! distal epiphysis +intersection_of: part_of UBERON:0004315 ! distal phalanx of pedal digit 1 +relationship: part_of UBERON:0004315 ! distal phalanx of pedal digit 1 + +[Term] +id: UBERON:0014872 +name: distal epiphysis of distal phalanx of pedal digit 2 +def: "A distal epiphysis that is part of a distal phalanx of pedal digit 2." [OBOL:automatic] +synonym: "distal end of distal phalanx of second toe" EXACT [FMA:33045] +synonym: "distal epiphysis of distal phalanx of pedal digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "distal epiphysis of distal phalanx of second toe" EXACT [FMA:33045] +synonym: "head of distal phalanx of second toe" EXACT [FMA:33045] +synonym: "ungual tuberosity of distal phalanx of second toe" RELATED [FMA:33045] +xref: FMA:33045 +is_a: UBERON:0014876 ! distal epiphysis of distal phalanx of pedal digit +intersection_of: UBERON:0004379 ! distal epiphysis +intersection_of: part_of UBERON:0004316 ! distal phalanx of pedal digit 2 +relationship: part_of UBERON:0004316 ! distal phalanx of pedal digit 2 + +[Term] +id: UBERON:0014873 +name: distal epiphysis of distal phalanx of pedal digit 3 +def: "A distal epiphysis that is part of a distal phalanx of pedal digit 3." [OBOL:automatic] +synonym: "distal end of distal phalanx of third toe" EXACT [FMA:33054] +synonym: "distal epiphysis of distal phalanx of pedal digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "distal epiphysis of distal phalanx of third toe" EXACT [FMA:33054] +synonym: "head of distal phalanx of third digit of foot" EXACT [FMA:33054] +synonym: "head of distal phalanx of third toe" EXACT [FMA:33054] +synonym: "ungual tuberosity of distal phalanx of third toe" RELATED [FMA:33054] +xref: FMA:33054 +is_a: UBERON:0014876 ! distal epiphysis of distal phalanx of pedal digit +intersection_of: UBERON:0004379 ! distal epiphysis +intersection_of: part_of UBERON:0004317 ! distal phalanx of pedal digit 3 +relationship: part_of UBERON:0004317 ! distal phalanx of pedal digit 3 + +[Term] +id: UBERON:0014874 +name: distal epiphysis of distal phalanx of pedal digit 4 +def: "A distal epiphysis that is part of a distal phalanx of pedal digit 4." [OBOL:automatic] +synonym: "distal end of distal phalanx of fourth toe" EXACT [FMA:33091] +synonym: "distal epiphysis of distal phalanx of fourth toe" EXACT [FMA:33091] +synonym: "distal epiphysis of distal phalanx of pedal digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "head of distal phalanx of fourth digit of foot" EXACT [FMA:33091] +synonym: "head of distal phalanx of fourth toe" EXACT [FMA:33091] +synonym: "ungal tuberosity of distal phalanx of fourth toe" RELATED [FMA:33091] +xref: FMA:33091 +is_a: UBERON:0014876 ! distal epiphysis of distal phalanx of pedal digit +intersection_of: UBERON:0004379 ! distal epiphysis +intersection_of: part_of UBERON:0004318 ! distal phalanx of pedal digit 4 +relationship: part_of UBERON:0004318 ! distal phalanx of pedal digit 4 + +[Term] +id: UBERON:0014875 +name: distal epiphysis of distal phalanx of pedal digit 5 +def: "A distal epiphysis that is part of a distal phalanx of pedal digit 5." [OBOL:automatic] +synonym: "distal end of distal phalanx of little toe" EXACT [FMA:33106] +synonym: "distal epiphysis of distal phalanx of little toe" EXACT [FMA:33106] +synonym: "distal epiphysis of distal phalanx of pedal digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "head of distal phalanx of fifth digit of foot" EXACT [FMA:33106] +synonym: "head of distal phalanx of fifth toe" EXACT [FMA:33106] +synonym: "head of distal phalanx of little toe" EXACT [FMA:33106] +synonym: "ungual tuberosity of distal phalanx of fifth toe" RELATED [FMA:33106] +xref: FMA:33106 +is_a: UBERON:0014876 ! distal epiphysis of distal phalanx of pedal digit +intersection_of: UBERON:0004379 ! distal epiphysis +intersection_of: part_of UBERON:0004319 ! distal phalanx of pedal digit 5 +relationship: part_of UBERON:0004319 ! distal phalanx of pedal digit 5 + +[Term] +id: UBERON:0014876 +name: distal epiphysis of distal phalanx of pedal digit +synonym: "distal end of distal phalanx of toe" EXACT [] +synonym: "head of distal phalanx of digit of foot" EXACT [] +synonym: "head of distal phalanx of digit of pes" EXACT [] +synonym: "head of distal phalanx of toe" EXACT [] +is_a: UBERON:0011976 ! epiphysis of distal phalanx of pes +is_a: UBERON:0013122 ! distal epiphysis of phalanx of pes +is_a: UBERON:0014887 ! distal epiphysis of distal phalanx of digit +intersection_of: UBERON:0004379 ! distal epiphysis +intersection_of: part_of UBERON:0003867 ! distal phalanx of pes + +[Term] +id: UBERON:0014881 +name: distal epiphysis of distal phalanx of manual digit 1 +def: "A distal epiphysis that is part of a distal phalanx of manual digit 1." [OBOL:automatic] +synonym: "distal end of phalanx of right thumb" EXACT [FMA:37609] +synonym: "distal epiphysis of distal phalanx of manual digit I" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "distal epiphysis of distal phalanx of thumb" EXACT [FMA:37609] +synonym: "head of distal phalanx of first digit of hand" EXACT [FMA:37609] +synonym: "head of distal phalanx of thumb" EXACT [FMA:37609] +synonym: "ungual tuberosity of distal phalanx of thumb" RELATED [FMA:37609] +xref: FMA:37609 +xref: http://www.snomedbrowser.com/Codes/Details/182011000 +is_a: UBERON:0014886 ! distal epiphysis of distal phalanx of manual digit +intersection_of: UBERON:0004379 ! distal epiphysis +intersection_of: part_of UBERON:0004337 ! distal phalanx of manual digit 1 +relationship: part_of UBERON:0004337 ! distal phalanx of manual digit 1 + +[Term] +id: UBERON:0014882 +name: distal epiphysis of distal phalanx of manual digit 2 +def: "A distal epiphysis that is part of a distal phalanx of manual digit 2." [OBOL:automatic] +synonym: "distal end of distal phalanx of index finger" EXACT [FMA:37621] +synonym: "distal end of distal phalanx of second finger" EXACT [FMA:37621] +synonym: "distal epiphysis of distal phalanx of index finger" EXACT [FMA:37621] +synonym: "distal epiphysis of distal phalanx of manual digit II" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "head of distal phalanx of index finger" EXACT [FMA:37621] +synonym: "head of distal phalanx of second finger" EXACT [FMA:37621] +synonym: "ungual tuberosity of distal phalanx of index finger" RELATED [FMA:37621] +xref: FMA:37621 +xref: http://www.snomedbrowser.com/Codes/Details/263457005 +is_a: UBERON:0014886 ! distal epiphysis of distal phalanx of manual digit +intersection_of: UBERON:0004379 ! distal epiphysis +intersection_of: part_of UBERON:0004311 ! distal phalanx of manual digit 2 +relationship: part_of UBERON:0004311 ! distal phalanx of manual digit 2 + +[Term] +id: UBERON:0014883 +name: distal epiphysis of distal phalanx of manual digit 3 +def: "A distal epiphysis that is part of a distal phalanx of manual digit 3." [OBOL:automatic] +synonym: "distal end of distal phalanx of middle finger" EXACT [FMA:37633] +synonym: "distal end of distal phalanx of third finger" EXACT [FMA:37633] +synonym: "distal epiphysis of distal phalanx of manual digit III" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "distal epiphysis of distal phalanx of middle finger" EXACT [FMA:37633] +synonym: "head of distal phalanx of middle finger" EXACT [FMA:37633] +synonym: "head of distal phalanx of third digit of hand" EXACT [FMA:37633] +synonym: "head of distal phalanx of third finger" EXACT [FMA:37633] +synonym: "ungual tuberosity of distal phalanx of middle finger" RELATED [FMA:37633] +xref: FMA:37633 +xref: http://www.snomedbrowser.com/Codes/Details/263458000 +is_a: UBERON:0014886 ! distal epiphysis of distal phalanx of manual digit +intersection_of: UBERON:0004379 ! distal epiphysis +intersection_of: part_of UBERON:0004312 ! distal phalanx of manual digit 3 +relationship: part_of UBERON:0004312 ! distal phalanx of manual digit 3 + +[Term] +id: UBERON:0014884 +name: distal epiphysis of distal phalanx of manual digit 4 +def: "A distal epiphysis that is part of a distal phalanx of manual digit 4." [OBOL:automatic] +synonym: "distal end of distal phalanx of fourth finger" EXACT [FMA:37645] +synonym: "distal end of distal phalanx of ring finger" EXACT [FMA:37645] +synonym: "distal epiphysis of distal phalanx of manual digit IV" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "distal epiphysis of distal phalanx of ring finger" EXACT [FMA:37645] +synonym: "head of distal phalanx of fourth digit of hand" EXACT [FMA:37645] +synonym: "head of distal phalanx of fourth finger" EXACT [FMA:37645] +synonym: "head of distal phalanx of ring finger" EXACT [FMA:37645] +synonym: "ungual tuberosity of distal phalanx of ring finger" RELATED [FMA:37645] +xref: FMA:37645 +xref: http://www.snomedbrowser.com/Codes/Details/263459008 +is_a: UBERON:0014886 ! distal epiphysis of distal phalanx of manual digit +intersection_of: UBERON:0004379 ! distal epiphysis +intersection_of: part_of UBERON:0004313 ! distal phalanx of manual digit 4 +relationship: part_of UBERON:0004313 ! distal phalanx of manual digit 4 + +[Term] +id: UBERON:0014885 +name: distal epiphysis of distal phalanx of manual digit 5 +def: "A distal epiphysis that is part of a distal phalanx of manual digit 5." [OBOL:automatic] +synonym: "distal end of distal phalanx of fifth finger" EXACT [FMA:37657] +synonym: "distal end of distal phalanx of little finger" EXACT [FMA:37657] +synonym: "distal epiphysis of distal phalanx of little finger" EXACT [FMA:37657] +synonym: "distal epiphysis of distal phalanx of manual digit V" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "head of distal phalanx of fifth digit of hand" EXACT [FMA:37657] +synonym: "head of distal phalanx of fifth finger" EXACT [FMA:37657] +synonym: "head of distal phalanx of little finger" EXACT [FMA:37657] +synonym: "ungual tuberosity of distal phalanx of little finger" RELATED [FMA:37657] +xref: FMA:37657 +xref: http://www.snomedbrowser.com/Codes/Details/263460003 +is_a: UBERON:0014886 ! distal epiphysis of distal phalanx of manual digit +intersection_of: UBERON:0004379 ! distal epiphysis +intersection_of: part_of UBERON:0004314 ! distal phalanx of manual digit 5 +relationship: part_of UBERON:0004314 ! distal phalanx of manual digit 5 + +[Term] +id: UBERON:0014886 +name: distal epiphysis of distal phalanx of manual digit +synonym: "distal end of distal phalanx of finger" EXACT [] +synonym: "head of distal phalanx of digit of hand" EXACT [] +synonym: "head of distal phalanx of digit of manus" EXACT [] +synonym: "head of distal phalanx of finger" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/182006002 +is_a: UBERON:0004409 ! distal epiphysis of phalanx of manus +is_a: UBERON:0011979 ! epiphysis of distal phalanx of manus +is_a: UBERON:0014887 ! distal epiphysis of distal phalanx of digit +intersection_of: UBERON:0004379 ! distal epiphysis +intersection_of: part_of UBERON:0003865 ! distal phalanx of manus + +[Term] +id: UBERON:0014887 +name: distal epiphysis of distal phalanx of digit +def: "A distal epiphysis that is part of a distal phalanx." [OBOL:automatic] +synonym: "distal end of distal phalanx of digit" EXACT [] +synonym: "head of distal phalanx" EXACT [] +synonym: "head of distal phalanx of digit" EXACT [] +synonym: "head of distal phalanx of digit of autopod" EXACT [] +is_a: UBERON:0004448 ! distal epiphysis of phalanx +intersection_of: UBERON:0004379 ! distal epiphysis +intersection_of: part_of UBERON:0004300 ! distal phalanx +relationship: part_of UBERON:0004300 ! distal phalanx + +[Term] +id: UBERON:0014888 +name: iliotibialis muscle +def: "A muscle in amphibians that connects originates in the ilium and inserts in the tibia." [ISBN:0073040584] +synonym: "iliotibilias" BROAD [] +synonym: "m. iliotibilias" EXACT [] +is_a: UBERON:0003663 ! hindlimb muscle +relationship: has_muscle_insertion UBERON:0000979 ! tibia +relationship: has_muscle_origin UBERON:0001273 ! ilium + +[Term] +id: UBERON:0014889 +name: left hemisphere of cerebellum +def: "A cerebellar hemisphere that is in_the_left_side_of a cerebellum." [OBOL:automatic] +subset: pheno_slim +xref: FMA:83877 +is_a: UBERON:0002245 ! cerebellar hemisphere +intersection_of: UBERON:0002245 ! cerebellar hemisphere +intersection_of: in_left_side_of UBERON:0002037 ! cerebellum +relationship: in_left_side_of UBERON:0002037 ! cerebellum + +[Term] +id: UBERON:0014890 +name: right hemisphere of cerebellum +def: "A cerebellar hemisphere that is in_the_right_side_of a cerebellum." [OBOL:automatic] +subset: pheno_slim +xref: FMA:83876 +is_a: UBERON:0002245 ! cerebellar hemisphere +intersection_of: UBERON:0002245 ! cerebellar hemisphere +intersection_of: in_right_side_of UBERON:0002037 ! cerebellum +relationship: in_right_side_of UBERON:0002037 ! cerebellum + +[Term] +id: UBERON:0014891 +name: brainstem white matter +def: "White matter that is part of a brainstem [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +synonym: "brain stem white matter" RELATED [EMAPA:35189] +synonym: "brainstem tract/commissure" RELATED [] +synonym: "brainstem tracts" RELATED [] +synonym: "brainstem tracts and commissures" RELATED [] +xref: EMAPA:35189 +xref: FMA:282112 +xref: http://www.snomedbrowser.com/Codes/Details/360442003 +xref: MA:0002741 +is_a: UBERON:0003544 ! brain white matter +intersection_of: UBERON:0002316 ! white matter +intersection_of: part_of UBERON:0002298 ! brainstem +relationship: part_of UBERON:0002298 ! brainstem + +[Term] +id: UBERON:0014892 +name: skeletal muscle organ +def: "A muscle organ that consists of skeletal muscle tissue ensheathed in epimysium, that develops from myotome and that is innervated by some somatic motor neuron. Skeletal muscles are typically attached (via a tendon) to a bone but there are exceptions (e.g. intrinsic tongue muscles)." [GOC:dos] +synonym: "skeletal muscle" BROAD [] +xref: AAO:0011099 +xref: BTO:0001103 +xref: CALOHA:TS-0933 +xref: EFO:0000888 +xref: EHDAA:5035 +xref: EHDAA:5043 +xref: EHDAA:5978 +xref: EHDAA:5984 +xref: EMAPA:35988 +xref: EV:0100377 +xref: GAID:141 +xref: MA:0003148 +xref: MAT:0000302 +xref: MESH:D018482 +xref: MIAA:0000302 +xref: OpenCyc:Mx4rv2kf-5wpEbGdrcN5Y29ycA +xref: TAO:0005277 +xref: VHOG:0000319 +xref: XAO:0000174 +xref: ZFA:0005277 +is_a: UBERON:0001630 ! muscle organ +relationship: composed_primarily_of UBERON:0001134 ! skeletal muscle tissue +relationship: develops_from UBERON:0003082 ! myotome +relationship: part_of UBERON:0018254 ! skeletal musculature +relationship: surrounded_by UBERON:0011899 ! epimysium + +[Term] +id: UBERON:0014895 +name: somatic muscle +def: "A muscle structure of invertebrates whose origin and insertion sites are in basal side of the epidermis or structures derived from it. The simplest somatic muscles consist of a single cell and associated extracellular structures." [GOC:DOS] +synonym: "skeletal muscle" RELATED [FBbt:00005073] +xref: FBbt:00005073 +xref: HAO:0001922 +is_a: UBERON:0005090 ! muscle structure +relationship: attaches_to UBERON:0002416 ! integumental system +relationship: part_of UBERON:0007095 ! somatic musculature + +[Term] +id: UBERON:0014896 +name: transversely striated somatic muscle +def: "A somatic muscle that consists of one or more somatic muscle myotubes and any associated extracellular structures." [GOC:DOS] +is_a: UBERON:0014895 ! somatic muscle + +[Term] +id: UBERON:0014897 +name: obliquely striated somatic muscle +def: "A somatic muscle that consists of one or more obliquely striated muscle cells and any associated extracellular structures." [GOC:DOS] +is_a: UBERON:0014895 ! somatic muscle + +[Term] +id: UBERON:0014898 +name: lamina terminalis of ischium +def: "In those cases in which the interilial region is broadly expanded and the pubis is extremely reduced, the anterior margin of the ischium forms an expanded area." [AAO:0000881, AAO:LAP] +xref: AAO:0000881 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0001274 {source="AAO"} ! ischium + +[Term] +id: UBERON:0014899 +name: anterolateral ligament of knee +def: "A ligament on the lateral aspect of the human knee, anterior to the fibular collateral ligament." [http://en.wikipedia.org/wiki/Anterolateral_ligament, https://doi.org/10.1111/joa.12087] +synonym: "(mid-third) lateral capsular ligament" EXACT [https://doi.org/10.1111/joa.12087] +synonym: "ALL" EXACT ABBREVIATION [https://doi.org/10.1111/joa.12087] +synonym: "anterolateral ligament" EXACT [https://doi.org/10.1111/joa.12087] +synonym: "capsulo-osseous layer of the iliotibial band" EXACT [https://doi.org/10.1111/joa.12087] +synonym: "ligament of Segond" EXACT [https://doi.org/10.1111/joa.12087] +xref: Anterolateral:ligament +is_a: UBERON:0011088 ! ligament of knee joint +relationship: connects UBERON:0000979 ! tibia +relationship: connects UBERON:0009986 ! lateral epicondyle of femur + +[Term] +id: UBERON:0014903 +name: primordial vasculature +def: "A portion of tissue that will develop into vasculature." [ZFA:0005076, ZFA:curator] +xref: EFO:0003708 +xref: TAO:0005076 +xref: ZFA:0005076 +is_a: UBERON:0001048 ! primordium +intersection_of: UBERON:0001048 ! primordium +intersection_of: has_potential_to_develop_into UBERON:0002049 ! vasculature +relationship: has_potential_to_develop_into UBERON:0002049 ! vasculature +relationship: part_of UBERON:0011695 ! embryonic cardiovascular system + +[Term] +id: UBERON:0014904 +name: intersegmental pulmonary vein +def: "A vein receiving blood from adjacent bronchopulmonary segments; it emerges from the inferior margin of a segment to become a tributary of a branch of a pulmonary vein." [http://www.medilexicon.com/medicaldictionary.php?t=97310] +synonym: "infrasegmental part" RELATED [http://www.medilexicon.com/medicaldictionary.php?s=infrasegmental+part] +synonym: "infrasegmental part of pulmonary vein" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=infrasegmental+part] +synonym: "intersegmental part of pulmonary vein" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=intersegmental+part+of+pulmonary+vein] +synonym: "intersegmental vein" RELATED [http://www.medilexicon.com/medicaldictionary.php?s=intersegmental+part+of+pulmonary+vein] +synonym: "partes intersegmentales venarum pulmonum" EXACT LATIN [http://www.medilexicon.com/medicaldictionary.php?s=partes+intersegmentales+venarum+pulmonum] +xref: FMA:76965 +is_a: UBERON:0002016 {source="FMA"} ! pulmonary vein + +[Term] +id: UBERON:0014907 +name: intersomitic vessel +def: "One of the primary blood vessel sprouts that originate from the dorsal aorta and posterior cardinal vein and align dorsoventrally at the myotomal boundaries between somites." [MGI:anna] +subset: pheno_slim +synonym: "intersegmental vessel" EXACT [ZFA:0001285] +synonym: "intersegmental vessels" EXACT PLURAL [ZFA:0001285] +synonym: "intersomitic blood vessel" EXACT [XAO:0004075] +synonym: "intersomitic vessels" EXACT PLURAL [ZFA:0001285] +synonym: "segmental vessel" EXACT [ZFA:0001285] +xref: EFO:0003664 +xref: EMAPA:37389 {source="MA:th"} +xref: TAO:0001285 +xref: XAO:0004075 +xref: ZFA:0001285 +is_a: UBERON:0001981 {source="ZFA"} ! blood vessel +relationship: develops_from UBERON:0005805 {source="ZFA"} ! dorsal aorta + +[Term] +id: UBERON:0014908 +name: cerebellopontine angle +def: "Junction between the cerebellum and the pons." [MESH:A08.186.211.132.810.428.200.462] +synonym: "angulus cerebellopontinus" RELATED LATIN [NeuroNames:544] +synonym: "cerebellopontile angle" RELATED [MESH:A08.186.211.132.810.428.200.462] +synonym: "cerebellopontine angle" RELATED [NeuroNames:544] +synonym: "cerebellopontine angle" RELATED [MESH:A08.186.211.132.810.428.200.462] +xref: Cerebellopontine:angle +xref: FMA:84358 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=544 +xref: http://www.snomedbrowser.com/Codes/Details/369037007 +xref: MESH:D002530 +xref: NCIT:C54057 +is_a: UBERON:0002616 ! regional part of brain +relationship: adjacent_to UBERON:0000988 ! pons +relationship: adjacent_to UBERON:0002037 ! cerebellum + +[Term] +id: UBERON:0014912 +name: thalamic eminence +synonym: "eminentia thalami" EXACT LATIN [ZFA:0007010] +synonym: "EMT" BROAD ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23375746] +xref: FMA:295507 +xref: TAO:0007010 +xref: XAO:0004301 +xref: ZFA:0007010 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0010225 ! thalamic complex + +[Term] +id: UBERON:0014913 +name: ventral pallium +def: "The pallial region located next to the pallium-subpallium boundary." [https://doi.org/10.1371/journal.pone.0044716] +synonym: "VP" BROAD ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23375746] +xref: DMBA:15904 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: adjacent_to UBERON:0000204 ! ventral part of telencephalon +relationship: part_of UBERON:0000203 ! pallium + +[Term] +id: UBERON:0014914 +name: haemolymphatic fluid-testis barrier +def: "A barrier between the blood or haemolymphatic fluid and the testes." [http://orcid.org/0000-0002-6601-2165] +synonym: "blood testis barrier" NARROW [http://www.ncbi.nlm.nih.gov/pubmed/864819] +xref: Blood-testis:barrier +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0005156 ! reproductive structure +relationship: adjacent_to UBERON:0000179 ! haemolymphatic fluid +relationship: adjacent_to UBERON:0000473 ! testis +relationship: part_of UBERON:0000079 ! male reproductive system + +[Term] +id: UBERON:0014915 +name: genu of facial nerve +def: "The bend in the facial nerve at the lateral end of the internal acoustic meatus." [http://medical-dictionary.thefreedictionary.com/genu+of+facial+nerve] +subset: pheno_slim +synonym: "first genu" BROAD [FMA:72510] +synonym: "first genu" RELATED [NeuroNames:581] +synonym: "genu internum n. faciales" RELATED LATIN [NeuroNames:581] +synonym: "genu nervi facialis" EXACT [FMA:TA] +synonym: "genu nervi facialis" RELATED LATIN [NeuroNames:581] +synonym: "genu of facial nerve" RELATED [NeuroNames:581] +synonym: "genu of the facial nerve" RELATED [NeuroNames:581] +synonym: "internal genu" RELATED [NeuroNames:581] +synonym: "internal genu of facial nerve" NARROW [FMA:72510] +synonym: "internal genu of facial nerve" RELATED [NeuroNames:581] +synonym: "internal genu of the facial nerve" RELATED [NeuroNames:581] +synonym: "nervus facialis (genu)" RELATED LATIN [NeuroNames:581] +xref: DHBA:12738 +xref: EMAPA:37870 {source="MA:th"} +xref: FMA:72510 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=581 +xref: MBA:1116 +is_a: UBERON:0007702 {source="FMA"} ! tract of brain +relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum + +[Term] +id: UBERON:0014916 +name: velar vocal fold +def: "On of a pair of medial protrusions of the intra-pharyngeal ostium (an oval opening within the soft palate that connects the oral and nasal portions of the pharynx), used in vocalization in Koalas." [https://doi.org/10.1016/j.cub.2013.10.069] +comment: Muscle notes: Because the larynx is attached to the caudal end of the pharynx where the IPO is situated, laryngeal retraction brought about by the sternothyroid muscle will automatically put tension on the rostro-caudally oriented velar vocal folds, and could also induce length changes of the folds. Contractions of the palatopharyngeal muscles may also influence the length and shape of the velar vocal folds directly (inducing width changes of the IPO). +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0013765 ! digestive system element +is_a: UBERON:0034681 ! vocal organ +relationship: in_lateral_side_of UBERON:0001733 ! soft palate +relationship: part_of UBERON:0001733 ! soft palate +relationship: present_in_taxon NCBITaxon:38625 + +[Term] +id: UBERON:0014917 +name: pouch sphincter +def: "A sphincter muscle that is part of a pouch. The pouch sphincter serves to keep the young from falling out." [http://en.wikipedia.org/wiki/Koala#Description] +is_a: UBERON:0004590 ! sphincter muscle +intersection_of: UBERON:0004590 ! sphincter muscle +intersection_of: part_of UBERON:0009118 ! marsupium +relationship: part_of UBERON:0009118 ! marsupium + +[Term] +id: UBERON:0014918 +name: retrosplenial granular cortex +subset: pheno_slim +synonym: "retrosplenial area, ventral part" RELATED [NeuroNames:1802] +synonym: "retrosplenial cortex, ventral part" RELATED [NeuroNames:1802] +synonym: "retrosplenial granular area" RELATED [NeuroNames:1802] +synonym: "retrosplenial granular cortex" RELATED [NeuroNames:1802] +synonym: "ventral part of the retrosplenial area" RELATED [NeuroNames:1802] +xref: EMAPA:37947 {source="MA:th"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1802 +xref: MBA:886 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0013531 ! retrosplenial region + +[Term] +id: UBERON:0014930 +name: perivascular space +def: "The space between a blood vessel and the pia mater." [https://doi.org/10.1007/s11064-015-1581-6, ncithesaurus:Perivascular_Space] +comment: VRS belonging to the subarachnoid space are continuous with VRS of the subpial space. The direct communication between VRS of the subarachnoid space and the subpial space is unique to the brain's arteries, as no leptomeningeal layers surround the brain's veins[WP] +subset: pheno_slim +synonym: "perivascular region" EXACT [] +synonym: "perivascular spaces" RELATED PLURAL [] +synonym: "Virchow-Robin space" EXACT [http://en.wikipedia.org/wiki/Virchow-Robin_space] +synonym: "VRS" BROAD ABBREVIATION [http://en.wikipedia.org/wiki/Virchow-Robin_space] +xref: http://linkedlifedata.com/resource/umls/id/C0225983 +xref: http://www.snomedbrowser.com/Codes/Details/342298001 +xref: NCIT:C83196 +xref: Virchow-Robin:space +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: adjacent_to UBERON:0001981 ! blood vessel +intersection_of: adjacent_to UBERON:0002361 ! pia mater +relationship: adjacent_to UBERON:0001981 ! blood vessel +relationship: adjacent_to UBERON:0002361 ! pia mater +relationship: contains UBERON:0001359 ! cerebrospinal fluid +relationship: part_of UBERON:0010743 ! meningeal cluster + +[Term] +id: UBERON:0014931 +name: periungual skin +def: "A zone of skin adjacent to a nail or claw." [http://orcid.org/0000-0002-6601-2165] +synonym: "periungual area" RELATED [] +synonym: "periungual region" RELATED [] +xref: http://www.snomedbrowser.com/Codes/Details/280418005 +is_a: UBERON:0015249 ! digit skin +relationship: adjacent_to UBERON:0001705 ! nail + +[Term] +id: UBERON:0014932 +name: periventricular white matter +xref: http://www.snomedbrowser.com/Codes/Details/37065005 +is_a: UBERON:0002316 ! white matter +relationship: adjacent_to UBERON:0004086 ! brain ventricle + +[Term] +id: UBERON:0014933 +name: periventricular gray matter +synonym: "periventricular grey matter" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/89530008 +is_a: UBERON:0003528 ! brain gray matter +relationship: adjacent_to UBERON:0004086 ! brain ventricle + +[Term] +id: UBERON:0014934 +name: obsolete cerebral cortex mantle layer +is_obsolete: true +replaced_by: UBERON:0004040 + +[Term] +id: UBERON:0014935 +name: cerebral cortex marginal layer +def: "developing superficial cortical layer located just under the pia matter, develops from the marginal layer of the neural tube and becomes cortical layer I" [http://orcid.org/0000-0002-6601-2165, MP:0000792] +synonym: "cerebral cortex marginal zone" RELATED [EMAPA:32713] +synonym: "cortical marginal layer" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "cortical marginal zone" EXACT [MP:0000792] +synonym: "future cortical layer I" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "marginal zone" BROAD [PBA:294021774] +synonym: "MZ" BROAD ABBREVIATION [BRAINSPAN:BRAINSPAN] +synonym: "MZ" BROAD ABBREVIATION [MP:0000792] +xref: EMAPA:17546 +xref: EMAPA:32713 +xref: PBA:294021774 +is_a: UBERON:0014950 ! layer of developing cerebral cortex +relationship: develops_from UBERON:0004062 ! neural tube marginal layer +relationship: part_of UBERON:0010403 ! brain marginal zone + +[Term] +id: UBERON:0014936 +name: cerebral cortex ventricular layer +synonym: "cerebral cortex ventricular zone" RELATED [EMAPA:32707] +xref: EMAPA:17547 +xref: EMAPA:32707 +xref: MA:0003189 +is_a: UBERON:0014950 ! layer of developing cerebral cortex +relationship: develops_from UBERON:0004060 ! neural tube ventricular layer + +[Term] +id: UBERON:0014940 +name: cerebral cortex subventricular zone +synonym: "cerebral cortex subventricular zone" RELATED [] +synonym: "SZ" BROAD ABBREVIATION [BRAINSPAN:BRAINSPAN] +xref: EMAPA:32704 +xref: MA:0003188 +xref: PBA:294021970 +is_a: UBERON:0014950 ! layer of developing cerebral cortex +relationship: develops_from UBERON:0004040 ! cortical intermediate zone + +[Term] +id: UBERON:0014950 +name: layer of developing cerebral cortex +is_a: UBERON:0005423 ! developing anatomical structure +relationship: part_of UBERON:0000956 {source="EMAPA"} ! cerebral cortex + +[Term] +id: UBERON:0014951 +name: proisocortex +def: "The part of the neocortex hich mainly consists of parts of cingulate, parahippocampal and temporopolar cortice. As distinct from isocortex (typical neocortex) which contains other regions." [BRAINSPAN:BRAINSPAN] +synonym: "intermediate belt" RELATED [NeuroNames:2311] +synonym: "iuxtallocorteccia@it" RELATED [NeuroNames:2311] +synonym: "juxtallocortex" RELATED [NeuroNames:2311] +synonym: "periisocortical belt" RELATED [NeuroNames:2311] +synonym: "proisocortex" RELATED [NeuroNames:2311] +synonym: "proisocortical belt" RELATED [NeuroNames:2311] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2311 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001950 ! neocortex + +[Term] +id: UBERON:0015001 +name: radius endochondral element +def: "The major preaxial endrochondral skeletal element in the anterior zeugopod." [https://github.com/obophenotype/uberon/issues/70, UBERON:mah] +synonym: "radius element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "radius skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0015021 ! forelimb endochondral element +union_of: UBERON:0001423 ! radius bone +union_of: UBERON:0006286 ! radius cartilage element +union_of: UBERON:0010846 ! radius pre-cartilage condensation +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton + +[Term] +id: UBERON:0015002 +name: radius-ulna endochondral element +def: "A radius-ulna bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "radius-ulna element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "radius-ulna skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0015021 ! forelimb endochondral element +union_of: UBERON:0006287 ! radius-ulna pre-cartilage condensation +union_of: UBERON:0006715 ! radio-ulna +union_of: UBERON:0010848 ! radius-ulna cartilage element +relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton + +[Term] +id: UBERON:0015003 +name: ulna endochondral element +def: "Major postaxial endrochondral skeletal element in the anterior zeugopod." [https://github.com/obophenotype/uberon/issues/70, UBERON:mah] +comment: The corresponding element in the posterior fin/limb is the fibula. +synonym: "ulna element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "ulna skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0015021 ! forelimb endochondral element +union_of: UBERON:0001424 ! ulna +union_of: UBERON:0006306 ! ulna cartilage element +union_of: UBERON:0010847 ! ulna pre-cartilage condensation +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton + +[Term] +id: UBERON:0015004 +name: tibia endochondral element +def: "The major preaxial endochondral element in the posterior zeugopod[Phenoscape]." [https://github.com/obophenotype/uberon/issues/71, PHENOSCAPE:mah] +synonym: "tibia element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "tibia skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0015022 ! hindlimb endochondral element +union_of: UBERON:0000979 ! tibia +union_of: UBERON:0010849 ! tibia cartilage element +union_of: UBERON:0010850 ! tibia pre-cartilage condensation +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton + +[Term] +id: UBERON:0015007 +name: cervical vertebra endochondral element +def: "A vertebral endochondral element in the cervical region of the vertebral column." [http://orcid.org/0000-0002-6601-2165] +synonym: "cervical vertebra element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "cervical vertebra skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0005174 ! dorsal region element +is_a: UBERON:0010913 ! vertebral element +intersection_of: UBERON:0010913 ! vertebral element +intersection_of: part_of UBERON:0006072 ! cervical region of vertebral column +union_of: UBERON:0002413 ! cervical vertebra +union_of: UBERON:0013505 ! cervical vertebra cartilage element +union_of: UBERON:0013506 ! cervical vertebra pre-cartilage condensation +relationship: part_of UBERON:0006072 ! cervical region of vertebral column + +[Term] +id: UBERON:0015008 +name: thoracic vertebra endochondral element +def: "A vertebral endochondral element in the thoracic region of the vertebral column." [http://orcid.org/0000-0002-6601-2165] +synonym: "thoracic vertebra element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "thoracic vertebra skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0005174 ! dorsal region element +is_a: UBERON:0005181 ! thoracic segment organ +is_a: UBERON:0010913 ! vertebral element +intersection_of: UBERON:0010913 ! vertebral element +intersection_of: part_of UBERON:0006073 ! thoracic region of vertebral column +union_of: UBERON:0002347 ! thoracic vertebra +union_of: UBERON:0013507 ! thoracic vertebra cartilage element +union_of: UBERON:0013508 ! thoracic vertebra pre-cartilage condensation +relationship: part_of UBERON:0006073 ! thoracic region of vertebral column + +[Term] +id: UBERON:0015009 +name: lumbar vertebra endochondral element +def: "A lumbar vertebra bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "lumbar vertebra element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "lumbar vertebra skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0005173 ! abdominal segment element +is_a: UBERON:0005174 ! dorsal region element +is_a: UBERON:0010913 ! vertebral element +intersection_of: UBERON:0010913 ! vertebral element +intersection_of: part_of UBERON:0006074 ! lumbar region of vertebral column +union_of: UBERON:0002414 ! lumbar vertebra +union_of: UBERON:0013509 ! lumbar vertebra cartilage element +union_of: UBERON:0013510 ! lumbar vertebra pre-cartilage condensation +relationship: part_of UBERON:0006074 ! lumbar region of vertebral column + +[Term] +id: UBERON:0015010 +name: sacral vertebra endochondral element +def: "A vertebra endochondral element that is part of the sacral region of the vertebral column." [http://orcid.org/0000-0002-6601-2165] +synonym: "sacral vertebra element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "sacral vertebra skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0005174 ! dorsal region element +is_a: UBERON:0005179 ! pelvic region element +is_a: UBERON:0010913 ! vertebral element +intersection_of: UBERON:0010913 ! vertebral element +intersection_of: part_of UBERON:0006075 ! sacral region of vertebral column +union_of: UBERON:0001094 ! sacral vertebra +union_of: UBERON:0010744 ! sacral vertebra pre-cartilage condensation +union_of: UBERON:0010745 ! sacral vertebra cartilage element +relationship: part_of UBERON:0006075 ! sacral region of vertebral column + +[Term] +id: UBERON:0015011 +name: tibiotarsus endochondral element +def: "A tibiotarsus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "tibiotarsus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "tibiotarsus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0015022 ! hindlimb endochondral element +union_of: UBERON:0008194 ! tibiotarsus +union_of: UBERON:0010902 ! tibiotarsus cartilage element +union_of: UBERON:0010903 ! tibiotarsus pre-cartilage condensation + +[Term] +id: UBERON:0015012 +name: tarsometatarsus endochondral element +def: "A tarsometatarsus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "tarsometatarsus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "tarsometatarsus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +union_of: UBERON:0008195 ! tarsometatarsus +union_of: UBERON:0010900 ! tarsometatarsus cartilage element +union_of: UBERON:0010901 ! tarsometatarsus pre-cartilage condensation +relationship: part_of UBERON:0001445 ! skeleton of pes + +[Term] +id: UBERON:0015013 +name: fibula endochondral element +def: "The major postaxial endochondral element in the posterior zeugopod[Phenoscape]." [https://github.com/obophenotype/uberon/issues/73, PHENOSCAPE:mah] +synonym: "fibula element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "fibula skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0015022 ! hindlimb endochondral element +union_of: UBERON:0001446 ! fibula +union_of: UBERON:0010851 ! fibula cartilage element +union_of: UBERON:0010852 ! fibula pre-cartilage condensation +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/mellybelly +relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton + +[Term] +id: UBERON:0015014 +name: calcaneum endochondral element +def: "A calcaneum bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "calcaneum element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "calcaneum skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0015050 ! tarsus endochondral element +union_of: UBERON:0001450 ! calcaneus +union_of: UBERON:0010801 ! calcaneum pre-cartilage condensation +union_of: UBERON:0010842 ! calcaneum cartilage element + +[Term] +id: UBERON:0015015 +name: supraoccipital endochondral element +def: "A supraoccipital bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "supraoccipital element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "supraoccipital skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0004747 ! supraoccipital bone +union_of: UBERON:0011162 ! supraoccipital cartilage element +union_of: UBERON:0011163 ! supraoccipital pre-cartilage condensation +relationship: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0002241 ! chondrocranium +relationship: part_of UBERON:0005902 ! occipital region + +[Term] +id: UBERON:0015016 +name: stapes endochondral element +def: "A stapes bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "stapes element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "stapes skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0035130 ! auditory ossicle endochondral element +union_of: UBERON:0001687 ! stapes bone +union_of: UBERON:0006294 ! stapes pre-cartilage condensation +union_of: UBERON:0010055 ! stapes cartilage element + +[Term] +id: UBERON:0015017 +name: incus endochondral element +def: "A incus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "incus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "incus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0035130 ! auditory ossicle endochondral element +union_of: UBERON:0001688 ! incus bone +union_of: UBERON:0006248 ! incus pre-cartilage condensation +union_of: UBERON:0007374 ! incus cartilage element + +[Term] +id: UBERON:0015018 +name: malleus endochondral element +def: "A malleus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "malleus" RELATED [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "malleus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "malleus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0035130 ! auditory ossicle endochondral element +union_of: UBERON:0001689 ! malleus bone +union_of: UBERON:0006262 ! malleus pre-cartilage condensation +union_of: UBERON:0010054 ! malleus cartilage element + +[Term] +id: UBERON:0015019 +name: rib endochondral element +def: "A rib bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "rib element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "rib skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0002228 ! rib +union_of: UBERON:0006288 ! rib cartilage element +union_of: UBERON:0006289 ! rib pre-cartilage condensation +relationship: part_of UBERON:0014478 ! rib skeletal system + +[Term] +id: UBERON:0015020 +name: obsolete otic capsule endochondral element +is_obsolete: true +replaced_by: UBERON:0004637 + +[Term] +id: UBERON:0015021 +name: forelimb endochondral element +def: "A forelimb bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "forelimb skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0015061 ! limb endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002102 ! forelimb +union_of: UBERON:0008962 ! forelimb bone +union_of: UBERON:0010883 ! forelimb cartilage element +union_of: UBERON:0010884 ! forelimb bone pre-cartilage condensation +relationship: part_of UBERON:0001440 ! forelimb skeleton + +[Term] +id: UBERON:0015022 +name: hindlimb endochondral element +def: "A hindlimb bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "hindlimb bone skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0015061 ! limb endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002103 ! hindlimb +union_of: UBERON:0003464 ! hindlimb bone +union_of: UBERON:0010885 ! hindlimb cartilage element +union_of: UBERON:0010886 ! hindlimb pre-cartilage condensation +relationship: part_of UBERON:0001441 ! hindlimb skeleton + +[Term] +id: UBERON:0015023 +name: phalanx endochondral element +def: "A phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0015063 ! autopod endochondral element +union_of: UBERON:0003221 ! phalanx +union_of: UBERON:0010700 ! phalanx pre-cartilage condensation +union_of: UBERON:0010701 ! phalanx cartilage element +relationship: part_of UBERON:0002544 ! digit +relationship: part_of UBERON:0012150 ! skeleton of digitopodium + +[Term] +id: UBERON:0015024 +name: manual digit phalanx endochondral element +def: "A manual digit phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0015021 ! forelimb endochondral element +is_a: UBERON:0015023 ! phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0002389 ! manual digit +union_of: UBERON:0001436 ! phalanx of manus +union_of: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +union_of: UBERON:0010686 ! manual digit phalanx cartilage element +relationship: part_of UBERON:0002389 ! manual digit +relationship: part_of UBERON:0010688 ! skeleton of manual acropodium +relationship: part_of UBERON:5102389 ! manual digit digitopodial skeleton + +[Term] +id: UBERON:0015025 +name: manual digit 1 phalanx endochondral element +def: "A manual digit 1 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit 1 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit 1 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit I phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0001463 ! manual digit 1 +union_of: UBERON:0003620 ! manual digit 1 phalanx +union_of: UBERON:0010575 ! manual digit 1 phalanx pre-cartilage condensation +union_of: UBERON:0010675 ! manual digit 1 phalanx cartilage element +relationship: part_of UBERON:0001463 ! manual digit 1 +relationship: part_of UBERON:5101463 ! manual digit 1 digitopodial skeleton + +[Term] +id: UBERON:0015026 +name: manual digit 2 phalanx endochondral element +def: "A manual digit 2 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit 2 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit 2 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit II phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003622 ! manual digit 2 +union_of: UBERON:0003636 ! manual digit 2 phalanx +union_of: UBERON:0010576 ! manual digit 2 phalanx pre-cartilage condensation +union_of: UBERON:0010676 ! manual digit 2 phalanx cartilage element +relationship: part_of UBERON:0003622 ! manual digit 2 +relationship: part_of UBERON:5103622 ! manual digit 2 digitopodial skeleton + +[Term] +id: UBERON:0015027 +name: manual digit 3 phalanx endochondral element +def: "A manual digit 3 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit 3 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit 3 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit III phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003623 ! manual digit 3 +union_of: UBERON:0003637 ! manual digit 3 phalanx +union_of: UBERON:0010577 ! manual digit 3 phalanx pre-cartilage condensation +union_of: UBERON:0010677 ! manual digit 3 phalanx cartilage element +relationship: part_of UBERON:0003623 ! manual digit 3 +relationship: part_of UBERON:5103623 ! manual digit 3 digitopodial skeleton + +[Term] +id: UBERON:0015028 +name: manual digit 4 phalanx endochondral element +def: "A manual digit 4 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit 4 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit 4 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit IV phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003624 ! manual digit 4 +union_of: UBERON:0003638 ! manual digit 4 phalanx +union_of: UBERON:0010578 ! manual digit 4 phalanx pre-cartilage condensation +union_of: UBERON:0010678 ! manual digit 4 phalanx cartilage element +relationship: part_of UBERON:0003624 ! manual digit 4 +relationship: part_of UBERON:5103624 ! manual digit 4 digitopodial skeleton + +[Term] +id: UBERON:0015029 +name: manual digit 5 phalanx endochondral element +def: "A manual digit 5 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit 5 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit 5 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit V phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003625 ! manual digit 5 +union_of: UBERON:0003639 ! manual digit 5 phalanx +union_of: UBERON:0010579 ! manual digit 5 phalanx pre-cartilage condensation +union_of: UBERON:0010679 ! manual digit 5 phalanx cartilage element +relationship: part_of UBERON:0003625 ! manual digit 5 +relationship: part_of UBERON:5103625 ! manual digit 5 digitopodial skeleton + +[Term] +id: UBERON:0015030 +name: pedal digit phalanx endochondral element +def: "A pedal digit phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015023 ! phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0001466 ! pedal digit +union_of: UBERON:0001449 ! phalanx of pes +union_of: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +union_of: UBERON:0010685 ! pedal digit phalanx cartilage element +relationship: part_of UBERON:0001466 ! pedal digit +relationship: part_of UBERON:0010696 ! skeleton of pedal acropodium +relationship: part_of UBERON:5101466 ! pedal digit digitopodial skeleton + +[Term] +id: UBERON:0015031 +name: pedal digit 1 phalanx endochondral element +def: "A pedal digit 1 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit 1 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit 1 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit I phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003631 ! pedal digit 1 +union_of: UBERON:0003640 ! pedal digit 1 phalanx +union_of: UBERON:0010580 ! pedal digit 1 phalanx pre-cartilage condensation +union_of: UBERON:0010680 ! pedal digit 1 phalanx cartilage element +relationship: part_of UBERON:0003631 ! pedal digit 1 +relationship: part_of UBERON:5103631 ! pedal digit 1 digitopodial skeleton + +[Term] +id: UBERON:0015032 +name: pedal digit 2 phalanx endochondral element +def: "A pedal digit 2 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit 2 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit 2 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit II phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003632 ! pedal digit 2 +union_of: UBERON:0003641 ! pedal digit 2 phalanx +union_of: UBERON:0010581 ! pedal digit 2 phalanx pre-cartilage condensation +union_of: UBERON:0010681 ! pedal digit 2 phalanx cartilage element +relationship: part_of UBERON:0003632 ! pedal digit 2 +relationship: part_of UBERON:5103632 ! pedal digit 2 digitopodial skeleton + +[Term] +id: UBERON:0015033 +name: pedal digit 3 phalanx endochondral element +def: "A pedal digit 3 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit 3 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit 3 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit III phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003633 ! pedal digit 3 +union_of: UBERON:0003642 ! pedal digit 3 phalanx +union_of: UBERON:0010582 ! pedal digit 3 phalanx pre-cartilage condensation +union_of: UBERON:0010682 ! pedal digit 3 phalanx cartilage element +relationship: part_of UBERON:0003633 ! pedal digit 3 +relationship: part_of UBERON:5103633 ! pedal digit 3 digitopodial skeleton + +[Term] +id: UBERON:0015034 +name: pedal digit 4 phalanx endochondral element +def: "A pedal digit 4 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit 4 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit 4 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit IV phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003634 ! pedal digit 4 +union_of: UBERON:0003862 ! pedal digit 4 phalanx +union_of: UBERON:0010583 ! pedal digit 4 phalanx pre-cartilage condensation +union_of: UBERON:0010683 ! pedal digit 4 phalanx cartilage element +relationship: part_of UBERON:0003634 ! pedal digit 4 +relationship: part_of UBERON:5103634 ! pedal digit 4 digitopodial skeleton + +[Term] +id: UBERON:0015035 +name: pedal digit 5 phalanx endochondral element +def: "A pedal digit 5 phalanx bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit 5 phalanx element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit 5 phalanx skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit V phalanx endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003635 ! pedal digit 5 +union_of: UBERON:0003863 ! pedal digit 5 phalanx +union_of: UBERON:0010584 ! pedal digit 5 phalanx pre-cartilage condensation +union_of: UBERON:0010684 ! pedal digit 5 phalanx cartilage element +relationship: part_of UBERON:0003635 ! pedal digit 5 +relationship: part_of UBERON:5103635 ! pedal digit 5 digitopodial skeleton + +[Term] +id: UBERON:0015036 +name: pedal digit metatarsal endochondral element +def: "A pedal digit metatarsal bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit metatarsal element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit metatarsal skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0000983 ! metatarsus region +union_of: UBERON:0010545 ! metatarsus skeleton +union_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +union_of: UBERON:0010697 ! pedal digit metatarsal cartilage element +relationship: part_of UBERON:0000983 ! metatarsus region +relationship: part_of UBERON:0012152 ! skeleton of pedal digitopodium + +[Term] +id: UBERON:0015037 +name: pedal digit 1 metatarsal endochondral element +def: "A pedal digit 1 metatarsal bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit 1 metatarsal element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit 1 metatarsal skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit I metatarsal endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +intersection_of: UBERON:0015036 ! pedal digit metatarsal endochondral element +intersection_of: part_of UBERON:5103631 ! pedal digit 1 digitopodial skeleton +union_of: UBERON:0003650 ! metatarsal bone of digit 1 +union_of: UBERON:0010547 ! pedal digit 1 metatarsal pre-cartilage condensation +union_of: UBERON:0010557 ! pedal digit 1 metatarsal cartilage element +relationship: part_of UBERON:5103631 ! pedal digit 1 digitopodial skeleton + +[Term] +id: UBERON:0015038 +name: pedal digit 2 metatarsal endochondral element +def: "A pedal digit 2 metatarsal bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit 2 metatarsal element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit 2 metatarsal skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit II metatarsal endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +intersection_of: UBERON:0015036 ! pedal digit metatarsal endochondral element +intersection_of: part_of UBERON:5103632 ! pedal digit 2 digitopodial skeleton +union_of: UBERON:0003651 ! metatarsal bone of digit 2 +union_of: UBERON:0010548 ! pedal digit 2 metatarsal pre-cartilage condensation +union_of: UBERON:0010558 ! pedal digit 2 metatarsal cartilage element +relationship: part_of UBERON:5103632 ! pedal digit 2 digitopodial skeleton + +[Term] +id: UBERON:0015039 +name: pedal digit 3 metatarsal endochondral element +def: "A pedal digit 3 metatarsal bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit 3 metatarsal element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit 3 metatarsal skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit III metatarsal endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +intersection_of: UBERON:0015036 ! pedal digit metatarsal endochondral element +intersection_of: part_of UBERON:5103633 ! pedal digit 3 digitopodial skeleton +union_of: UBERON:0003652 ! metatarsal bone of digit 3 +union_of: UBERON:0010549 ! pedal digit 3 metatarsal pre-cartilage condensation +union_of: UBERON:0010559 ! pedal digit 3 metatarsal cartilage element +relationship: part_of UBERON:5103633 ! pedal digit 3 digitopodial skeleton + +[Term] +id: UBERON:0015040 +name: pedal digit 4 metatarsal endochondral element +def: "A pedal digit 4 metatarsal bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit 4 metatarsal element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit 4 metatarsal skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit IV metatarsal endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +intersection_of: UBERON:0015036 ! pedal digit metatarsal endochondral element +intersection_of: part_of UBERON:5103634 ! pedal digit 4 digitopodial skeleton +union_of: UBERON:0003653 ! metatarsal bone of digit 4 +union_of: UBERON:0010550 ! pedal digit 4 metatarsal pre-cartilage condensation +union_of: UBERON:0010560 ! pedal digit 4 metatarsal cartilage element +relationship: part_of UBERON:5103634 ! pedal digit 4 digitopodial skeleton + +[Term] +id: UBERON:0015041 +name: pedal digit 5 metatarsal endochondral element +def: "A pedal digit 5 metatarsal bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit 5 metatarsal element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit 5 metatarsal skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pedal digit V metatarsal endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +intersection_of: UBERON:0015036 ! pedal digit metatarsal endochondral element +intersection_of: part_of UBERON:5103635 ! pedal digit 5 digitopodial skeleton +union_of: UBERON:0003654 ! metatarsal bone of digit 5 +union_of: UBERON:0010551 ! pedal digit 5 metatarsal pre-cartilage condensation +union_of: UBERON:0010561 ! pedal digit 5 metatarsal cartilage element +relationship: part_of UBERON:5103635 ! pedal digit 5 digitopodial skeleton + +[Term] +id: UBERON:0015042 +name: manual digit metacarpus endochondral element +def: "A manual digit metacarpus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit metacarpus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit metacarpus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0015021 ! forelimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0004453 ! metacarpus region +union_of: UBERON:0010544 ! metacarpus skeleton +union_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +union_of: UBERON:0010699 ! manual digit metacarpus cartilage element +relationship: part_of UBERON:0004453 ! metacarpus region +relationship: part_of UBERON:0012151 ! skeleton of manual digitopodium + +[Term] +id: UBERON:0015043 +name: manual digit 1 metacarpus endochondral element +def: "A manual digit 1 metacarpus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit 1 metacarpus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit 1 metacarpus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit I metacarpus endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +intersection_of: UBERON:0015042 ! manual digit metacarpus endochondral element +intersection_of: part_of UBERON:5101463 ! manual digit 1 digitopodial skeleton +union_of: UBERON:0003645 ! metacarpal bone of digit 1 +union_of: UBERON:0010565 ! manual digit 1 metacarpus pre-cartilage condensation +union_of: UBERON:0010570 ! manual digit 1 metacarpus cartilage element +relationship: part_of UBERON:5101463 ! manual digit 1 digitopodial skeleton + +[Term] +id: UBERON:0015044 +name: manual digit 2 metacarpus endochondral element +def: "A manual digit 2 metacarpus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit 2 metacarpus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit 2 metacarpus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit II metacarpus endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +intersection_of: UBERON:0015042 ! manual digit metacarpus endochondral element +intersection_of: part_of UBERON:5103622 ! manual digit 2 digitopodial skeleton +union_of: UBERON:0003646 ! metacarpal bone of digit 2 +union_of: UBERON:0010566 ! manual digit 2 metacarpus pre-cartilage condensation +union_of: UBERON:0010571 ! manual digit 2 metacarpus cartilage element +relationship: part_of UBERON:5103622 ! manual digit 2 digitopodial skeleton + +[Term] +id: UBERON:0015045 +name: manual digit 3 metacarpus endochondral element +def: "A manual digit 3 metacarpus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit 3 metacarpus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit 3 metacarpus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit III metacarpus endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +intersection_of: UBERON:0015042 ! manual digit metacarpus endochondral element +intersection_of: part_of UBERON:5103623 ! manual digit 3 digitopodial skeleton +union_of: UBERON:0003647 ! metacarpal bone of digit 3 +union_of: UBERON:0010567 ! manual digit 3 metacarpus pre-cartilage condensation +union_of: UBERON:0010572 ! manual digit 3 metacarpus cartilage element +relationship: part_of UBERON:5103623 ! manual digit 3 digitopodial skeleton + +[Term] +id: UBERON:0015046 +name: manual digit 4 metacarpus endochondral element +def: "A manual digit 4 metacarpus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit 4 metacarpus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit 4 metacarpus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit IV metacarpus endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +intersection_of: UBERON:0015042 ! manual digit metacarpus endochondral element +intersection_of: part_of UBERON:5103624 ! manual digit 4 digitopodial skeleton +union_of: UBERON:0003648 ! metacarpal bone of digit 4 +union_of: UBERON:0010568 ! manual digit 4 metacarpus pre-cartilage condensation +union_of: UBERON:0010573 ! manual digit 4 metacarpus cartilage element +relationship: part_of UBERON:5103624 ! manual digit 4 digitopodial skeleton + +[Term] +id: UBERON:0015047 +name: manual digit 5 metacarpus endochondral element +def: "A manual digit 5 metacarpus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit 5 metacarpus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit 5 metacarpus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "manual digit V metacarpus endochondral element" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +intersection_of: UBERON:0015042 ! manual digit metacarpus endochondral element +intersection_of: part_of UBERON:5103625 ! manual digit 5 digitopodial skeleton +union_of: UBERON:0003649 ! metacarpal bone of digit 5 +union_of: UBERON:0010569 ! manual digit 5 metacarpus pre-cartilage condensation +union_of: UBERON:0010574 ! manual digit 5 metacarpus cartilage element +relationship: part_of UBERON:5103625 ! manual digit 5 digitopodial skeleton + +[Term] +id: UBERON:0015048 +name: basioccipital endochondral element +def: "A basioccipital bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "basioccipital element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "basioccipital skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001692 ! basioccipital bone +union_of: UBERON:0006209 ! basioccipital cartilage element +union_of: UBERON:0009197 ! basioccipital pre-cartilage condensation +relationship: part_of UBERON:0002517 ! basicranium +relationship: part_of UBERON:0005902 ! occipital region + +[Term] +id: UBERON:0015049 +name: carpus endochondral element +def: "A carpus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "carpus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "carpus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0015021 ! forelimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0004452 ! carpal region +union_of: UBERON:0001435 ! carpal bone +union_of: UBERON:0006213 ! carpus cartilage element +union_of: UBERON:0006214 ! carpus pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015050 +name: tarsus endochondral element +def: "A tarsus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "tarsus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "tarsus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0004454 ! tarsal region +union_of: UBERON:0001447 ! tarsal bone +union_of: UBERON:0010540 ! tarsus pre-cartilage condensation +union_of: UBERON:0010541 ! tarsus cartilage element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015051 +name: exoccipital endochondral element +def: "A exoccipital bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "exoccipital element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "exoccipital skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001693 ! exoccipital bone +union_of: UBERON:0006228 ! exoccipital pre-cartilage condensation +union_of: UBERON:0010752 ! exoccipital cartilage element +relationship: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0002241 ! chondrocranium +relationship: part_of UBERON:0005902 ! occipital region + +[Term] +id: UBERON:0015052 +name: femur endochondral element +def: "A femur bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "femur element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "femur skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0015022 ! hindlimb endochondral element +union_of: UBERON:0000981 ! femur +union_of: UBERON:0006234 ! femur pre-cartilage condensation +union_of: UBERON:0010129 ! femur cartilage element +relationship: part_of UBERON:0000376 ! hindlimb stylopod + +[Term] +id: UBERON:0015053 +name: humerus endochondral element +def: "A humerus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "humerus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "humerus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0015021 ! forelimb endochondral element +union_of: UBERON:0000976 ! humerus +union_of: UBERON:0006245 ! humerus cartilage element +union_of: UBERON:0006246 ! humerus pre-cartilage condensation +relationship: part_of UBERON:0003822 ! forelimb stylopod + +[Term] +id: UBERON:0015054 +name: iliac endochondral element +def: "A iliac bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "iliac element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "iliac skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005179 ! pelvic region element +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001273 ! ilium +union_of: UBERON:0006247 ! iliac pre-cartilage condensation +union_of: UBERON:0010714 ! iliac cartilage element +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton + +[Term] +id: UBERON:0015055 +name: pubic endochondral element +def: "A pubic bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pubic element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "pubic skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005179 ! pelvic region element +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001275 ! pubis +union_of: UBERON:0006285 ! pubic pre-cartilage condensation +union_of: UBERON:0010718 ! pubic cartilage element +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton + +[Term] +id: UBERON:0015056 +name: ischial endochondral element +def: "A ischial bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "ischial element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "ischial skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005179 ! pelvic region element +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001274 ! ischium +union_of: UBERON:0006254 ! ischial cartilage element +union_of: UBERON:0006255 ! ischial pre-cartilage condensation +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton + +[Term] +id: UBERON:0015057 +name: scapula endochondral element +def: "A scapula bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "scapula element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "scapula skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0006290 ! scapula cartilage element +union_of: UBERON:0006291 ! scapula pre-cartilage condensation +union_of: UBERON:0006849 ! scapula +relationship: part_of UBERON:0007831 ! pectoral girdle skeleton + +[Term] +id: UBERON:0015058 +name: alisphenoid endochondral element +def: "A alisphenoid bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "alisphenoid element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "alisphenoid skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0006721 ! alisphenoid bone +union_of: UBERON:0010732 ! alisphenoid pre-cartilage condensation +union_of: UBERON:0010733 ! alisphenoid cartilage element +relationship: part_of UBERON:0008895 ! splanchnocranium + +[Term] +id: UBERON:0015059 +name: orbitosphenoid endochondral element +def: "A orbitosphenoid bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "orbitosphenoid element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "orbitosphenoid skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0002478 ! orbitosphenoid +union_of: UBERON:0005687 ! orbitosphenoid cartilage element +union_of: UBERON:0010728 ! sphenoid lesser wing pre-cartilage condensation +relationship: part_of UBERON:0002517 ! basicranium +relationship: part_of UBERON:0003111 ! sphenoid region + +[Term] +id: UBERON:0015060 +name: sphenoid endochondral element +def: "A sphenoid bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "sphenoid bone skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "sphenoid element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001677 ! sphenoid bone +union_of: UBERON:0009191 ! sphenoid bone pre-cartilage condensation +union_of: UBERON:0009193 ! sphenoid cartilage element +relationship: part_of UBERON:0011156 ! facial skeleton + +[Term] +id: UBERON:0015061 +name: limb endochondral element +def: "A limb bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "limb bone endochondral element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +synonym: "limb bone skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002101 ! limb +union_of: UBERON:0002428 ! limb bone +union_of: UBERON:0010881 ! limb cartilage element +union_of: UBERON:0010882 ! limb bone pre-cartilage condensation +relationship: part_of UBERON:0004381 ! skeleton of limb + +[Term] +id: UBERON:0015062 +name: bone condensation +def: "A delimited region of osteoblasts representing the early stages of bone formation." [AEO:0000213, AEO:JB] +xref: AEO:0000213 +is_a: UBERON:0005856 {source="AEO"} ! developing mesenchymal condensation +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004288 {source="AEO"} ! skeleton + +[Term] +id: UBERON:0015063 +name: autopod endochondral element +def: "A endochondral element that is part of a autopod region." [OBOL:automatic] +is_a: UBERON:0015061 ! limb endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002470 ! autopod region +relationship: implements_design_pattern https://github.com/obophenotype/uberon/wiki/Skeleton-partonomy-Design-Pattern +relationship: part_of UBERON:0006717 {source="cjm"} ! autopodial skeleton + +[Term] +id: UBERON:0015064 +name: autopod cartilage +def: "A autopod endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0015063 ! autopod endochondral element +intersection_of: UBERON:0015063 ! autopod endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: implements_design_pattern https://github.com/obophenotype/uberon/wiki/Skeleton-partonomy-Design-Pattern + +[Term] +id: UBERON:0015067 +name: centrale endochondral element +def: "Endochondral element located between the proximal and distal rows of carpals or tarsals and thus representing the central carpals or tarsals[PHENOSCAPE]." [PHENOSCAPE:AMAO] +synonym: "central mesopodium element" EXACT [UBERON:0012131] +synonym: "centralia" RELATED PLURAL [UBERON:0012131] +is_a: UBERON:0015063 ! autopod endochondral element +relationship: part_of UBERON:0009878 ! mesopodial skeleton + +[Term] +id: UBERON:0015068 +name: distal carpal endochondral element +def: "A distal mesopodial endochondral element that is part of a forelimb." [OBOL:automatic] +synonym: "distal carpal" RELATED SYSTEMATIC [UBERON:cjm] +synonym: "distal carpal" RELATED [AAO:0000847] +is_a: UBERON:0015049 ! carpus endochondral element +is_a: UBERON:0018099 ! distal mesopodial endochondral element +intersection_of: UBERON:0018099 ! distal mesopodial endochondral element +intersection_of: part_of UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0015069 +name: distal carpal cartilage element +def: "A distal carpal endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +is_a: UBERON:0015068 ! distal carpal endochondral element +is_a: UBERON:0018100 ! distal mesopodial cartilage element +is_a: UBERON:0035128 ! manus cartilage element +intersection_of: UBERON:0015068 ! distal carpal endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0015077 +name: centrale cartilage +def: "A centrale endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015067 ! centrale endochondral element +intersection_of: UBERON:0015067 ! centrale endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0015078 +name: proximal carpal endochondral element +def: "A proximal mesopodial endochondral element that is part of a forelimb." [OBOL:automatic] +synonym: "proximal carpal" RELATED SYSTEMATIC [UBERON:cjm] +synonym: "proximal carpal element" EXACT [UBERON:cjm] +is_a: UBERON:0015049 ! carpus endochondral element +is_a: UBERON:0017750 ! proximal mesopodial endochondral element +intersection_of: UBERON:0017750 ! proximal mesopodial endochondral element +intersection_of: part_of UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0015079 +name: proximal carpal cartilage +def: "A proximal carpal endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +is_a: UBERON:0015078 ! proximal carpal endochondral element +is_a: UBERON:0017751 ! proximal mesopodial cartilage element +is_a: UBERON:0035128 ! manus cartilage element +intersection_of: UBERON:0015078 ! proximal carpal endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015080 ! proximal carpal bone pre-cartilage condensation + +[Term] +id: UBERON:0015080 +name: proximal carpal bone pre-cartilage condensation +def: "A proximal carpal endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015078 ! proximal carpal endochondral element +intersection_of: UBERON:0015078 ! proximal carpal endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015081 +name: proximal tarsal endochondral element +def: "A proximal mesopodial endochondral element that is part of a hindlimb." [OBOL:automatic] +synonym: "proximal tarsal" RELATED SYSTEMATIC [UBERON:cjm] +is_a: UBERON:0015050 ! tarsus endochondral element +is_a: UBERON:0017750 ! proximal mesopodial endochondral element +intersection_of: UBERON:0017750 ! proximal mesopodial endochondral element +intersection_of: part_of UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0015082 +name: proximal tarsal cartilage +def: "A proximal tarsal endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +is_a: UBERON:0015081 ! proximal tarsal endochondral element +is_a: UBERON:0017751 ! proximal mesopodial cartilage element +is_a: UBERON:0035129 ! pes cartilage element +intersection_of: UBERON:0015081 ! proximal tarsal endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015083 ! proximal tarsal bone pre-cartilage condensation + +[Term] +id: UBERON:0015083 +name: proximal tarsal bone pre-cartilage condensation +def: "A proximal tarsal endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +is_a: UBERON:0010886 ! hindlimb pre-cartilage condensation +is_a: UBERON:0015081 ! proximal tarsal endochondral element +intersection_of: UBERON:0015081 ! proximal tarsal endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015084 +name: distal carpal bone 1 endochondral element +synonym: "distal carpal 1" RELATED SYSTEMATIC [UBERON:cjm] +is_a: UBERON:0015049 ! carpus endochondral element + +[Term] +id: UBERON:0015085 +name: distal carpal bone 1 cartilage +def: "A distal carpal bone 1 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +is_a: UBERON:0015084 ! distal carpal bone 1 endochondral element +is_a: UBERON:0035128 ! manus cartilage element +intersection_of: UBERON:0015084 ! distal carpal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015086 ! distal carpal bone 1 pre-cartilage condensation + +[Term] +id: UBERON:0015086 +name: distal carpal bone 1 pre-cartilage condensation +def: "A distal carpal bone 1 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015084 ! distal carpal bone 1 endochondral element +intersection_of: UBERON:0015084 ! distal carpal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015087 +name: distal carpal bone 2 endochondral element +synonym: "distal carpal 2" RELATED SYSTEMATIC [UBERON:cjm] +is_a: UBERON:0015049 ! carpus endochondral element + +[Term] +id: UBERON:0015088 +name: distal carpal bone 2 cartilage +def: "A distal carpal bone 2 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +is_a: UBERON:0015087 ! distal carpal bone 2 endochondral element +is_a: UBERON:0035128 ! manus cartilage element +intersection_of: UBERON:0015087 ! distal carpal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015089 ! distal carpal bone 2 pre-cartilage condensation + +[Term] +id: UBERON:0015089 +name: distal carpal bone 2 pre-cartilage condensation +def: "A distal carpal bone 2 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015087 ! distal carpal bone 2 endochondral element +intersection_of: UBERON:0015087 ! distal carpal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015090 +name: distal carpal bone 3 endochondral element +synonym: "distal carpal 3" RELATED SYSTEMATIC [UBERON:cjm] +is_a: UBERON:0015049 ! carpus endochondral element + +[Term] +id: UBERON:0015091 +name: distal carpal bone 3 cartilage +def: "A distal carpal bone 3 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +is_a: UBERON:0015090 ! distal carpal bone 3 endochondral element +is_a: UBERON:0035128 ! manus cartilage element +intersection_of: UBERON:0015090 ! distal carpal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015092 ! distal carpal bone 3 pre-cartilage condensation + +[Term] +id: UBERON:0015092 +name: distal carpal bone 3 pre-cartilage condensation +def: "A distal carpal bone 3 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015090 ! distal carpal bone 3 endochondral element +intersection_of: UBERON:0015090 ! distal carpal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015093 +name: distal carpal bone 4 endochondral element +synonym: "distal carpal 4" RELATED SYSTEMATIC [UBERON:cjm] +is_a: UBERON:0015049 ! carpus endochondral element + +[Term] +id: UBERON:0015094 +name: distal carpal bone 4 cartilage +def: "A distal carpal bone 4 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +is_a: UBERON:0015093 ! distal carpal bone 4 endochondral element +is_a: UBERON:0035128 ! manus cartilage element +intersection_of: UBERON:0015093 ! distal carpal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015095 ! distal carpal bone 4 pre-cartilage condensation + +[Term] +id: UBERON:0015095 +name: distal carpal bone 4 pre-cartilage condensation +def: "A distal carpal bone 4 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015093 ! distal carpal bone 4 endochondral element +intersection_of: UBERON:0015093 ! distal carpal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015096 +name: distal carpal bone 5 endochondral element +synonym: "distal carpal 5" RELATED SYSTEMATIC [UBERON:cjm] +is_a: UBERON:0015049 ! carpus endochondral element + +[Term] +id: UBERON:0015097 +name: distal carpal bone 5 cartilage +def: "A distal carpal bone 5 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +is_a: UBERON:0015096 ! distal carpal bone 5 endochondral element +is_a: UBERON:0035128 ! manus cartilage element +intersection_of: UBERON:0015096 ! distal carpal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015098 ! distal carpal bone 5 pre-cartilage condensation + +[Term] +id: UBERON:0015098 +name: distal carpal bone 5 pre-cartilage condensation +def: "A distal carpal bone 5 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015096 ! distal carpal bone 5 endochondral element +intersection_of: UBERON:0015096 ! distal carpal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015099 +name: distal tarsal endochondral element +def: "A distal mesopodial endochondral element that is part of a hindlimb." [OBOL:automatic] +synonym: "distal tarsal" RELATED SYSTEMATIC [UBERON:cjm] +is_a: UBERON:0015050 ! tarsus endochondral element +is_a: UBERON:0018099 ! distal mesopodial endochondral element +intersection_of: UBERON:0018099 ! distal mesopodial endochondral element +intersection_of: part_of UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0015100 +name: distal tarsal cartilage +def: "A distal tarsal endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +is_a: UBERON:0015099 ! distal tarsal endochondral element +is_a: UBERON:0018100 ! distal mesopodial cartilage element +is_a: UBERON:0035129 ! pes cartilage element +intersection_of: UBERON:0015099 ! distal tarsal endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015101 ! distal tarsal bone pre-cartilage condensation + +[Term] +id: UBERON:0015101 +name: distal tarsal bone pre-cartilage condensation +def: "A distal tarsal endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +is_a: UBERON:0010886 ! hindlimb pre-cartilage condensation +is_a: UBERON:0015099 ! distal tarsal endochondral element +is_a: UBERON:0018101 ! distal mesopodial pre-cartilage condensation +intersection_of: UBERON:0015099 ! distal tarsal endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015102 +name: distal tarsal bone 1 endochondral element +synonym: "distal tarsal 1" RELATED SYSTEMATIC [UBERON:cjm] +is_a: UBERON:0015099 ! distal tarsal endochondral element + +[Term] +id: UBERON:0015103 +name: distal tarsal bone 1 cartilage +def: "A distal tarsal bone 1 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +synonym: "distal tarsal 1 cartilage" EXACT [UBERON:cjm] +synonym: "distal tarsal 1 cartilage element" EXACT SYSTEMATIC [UBERON:cjm] +is_a: UBERON:0015100 ! distal tarsal cartilage +is_a: UBERON:0015102 ! distal tarsal bone 1 endochondral element +intersection_of: UBERON:0015102 ! distal tarsal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015104 ! distal tarsal bone 1 pre-cartilage condensation + +[Term] +id: UBERON:0015104 +name: distal tarsal bone 1 pre-cartilage condensation +def: "A distal tarsal bone 1 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +is_a: UBERON:0015101 ! distal tarsal bone pre-cartilage condensation +is_a: UBERON:0015102 ! distal tarsal bone 1 endochondral element +intersection_of: UBERON:0015102 ! distal tarsal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015105 +name: distal tarsal bone 2 endochondral element +synonym: "distal tarsal 2" RELATED SYSTEMATIC [UBERON:cjm] +is_a: UBERON:0015099 ! distal tarsal endochondral element + +[Term] +id: UBERON:0015106 +name: distal tarsal bone 2 cartilage +def: "A distal tarsal bone 2 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +synonym: "distal tarsal 2 cartilage" EXACT [UBERON:cjm] +synonym: "distal tarsal 2 cartilage element" EXACT SYSTEMATIC [UBERON:cjm] +is_a: UBERON:0015100 ! distal tarsal cartilage +is_a: UBERON:0015105 ! distal tarsal bone 2 endochondral element +intersection_of: UBERON:0015105 ! distal tarsal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015107 ! distal tarsal bone 2 pre-cartilage condensation + +[Term] +id: UBERON:0015107 +name: distal tarsal bone 2 pre-cartilage condensation +def: "A distal tarsal bone 2 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +is_a: UBERON:0015101 ! distal tarsal bone pre-cartilage condensation +is_a: UBERON:0015105 ! distal tarsal bone 2 endochondral element +intersection_of: UBERON:0015105 ! distal tarsal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015108 +name: distal tarsal bone 3 endochondral element +synonym: "distal tarsal 3" RELATED SYSTEMATIC [UBERON:cjm] +is_a: UBERON:0015099 ! distal tarsal endochondral element + +[Term] +id: UBERON:0015109 +name: distal tarsal bone 3 cartilage +def: "A distal tarsal bone 3 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +is_a: UBERON:0015100 ! distal tarsal cartilage +is_a: UBERON:0015108 ! distal tarsal bone 3 endochondral element +intersection_of: UBERON:0015108 ! distal tarsal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015110 ! distal tarsal bone 3 pre-cartilage condensation + +[Term] +id: UBERON:0015110 +name: distal tarsal bone 3 pre-cartilage condensation +def: "A distal tarsal bone 3 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +is_a: UBERON:0015101 ! distal tarsal bone pre-cartilage condensation +is_a: UBERON:0015108 ! distal tarsal bone 3 endochondral element +intersection_of: UBERON:0015108 ! distal tarsal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015111 +name: distal tarsal bone 4 endochondral element +synonym: "distal tarsal 4" RELATED SYSTEMATIC [UBERON:cjm] +is_a: UBERON:0015099 ! distal tarsal endochondral element + +[Term] +id: UBERON:0015112 +name: distal tarsal bone 4 cartilage +def: "A distal tarsal bone 4 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +is_a: UBERON:0015100 ! distal tarsal cartilage +is_a: UBERON:0015111 ! distal tarsal bone 4 endochondral element +intersection_of: UBERON:0015111 ! distal tarsal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015113 ! distal tarsal bone 4 pre-cartilage condensation + +[Term] +id: UBERON:0015113 +name: distal tarsal bone 4 pre-cartilage condensation +def: "A distal tarsal bone 4 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +is_a: UBERON:0015101 ! distal tarsal bone pre-cartilage condensation +is_a: UBERON:0015111 ! distal tarsal bone 4 endochondral element +intersection_of: UBERON:0015111 ! distal tarsal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015114 +name: distal tarsal bone 5 endochondral element +synonym: "distal tarsal 5" RELATED SYSTEMATIC [UBERON:cjm] +is_a: UBERON:0015099 ! distal tarsal endochondral element + +[Term] +id: UBERON:0015115 +name: distal tarsal bone 5 cartilage +def: "A distal tarsal bone 5 endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +is_a: UBERON:0015100 ! distal tarsal cartilage +is_a: UBERON:0015114 ! distal tarsal bone 5 endochondral element +intersection_of: UBERON:0015114 ! distal tarsal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015116 ! distal tarsal bone 5 pre-cartilage condensation + +[Term] +id: UBERON:0015116 +name: distal tarsal bone 5 pre-cartilage condensation +def: "A distal tarsal bone 5 endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +is_a: UBERON:0015101 ! distal tarsal bone pre-cartilage condensation +is_a: UBERON:0015114 ! distal tarsal bone 5 endochondral element +intersection_of: UBERON:0015114 ! distal tarsal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015117 +name: lamina terminalis of cerebral hemisphere +def: "The remnant of the lamina terminalis in the developed brain." [http://orcid.org/0000-0002-6601-2165] +comment: In the developed brain, the lamina terminalis remains as the thin rostral wall of the third ventricle, stretching from the bases of the major cerebral commissures (the anterior commissure, the commissure of the fornix, and the rostrum of the corpus callosum) to the dorsal surface of the optic chiasm[MGI:anna] +synonym: "lamina terminalis" BROAD [FMA:61975] +xref: DHBA:12105 +xref: EHDAA:3500 +xref: EHDAA:4498 +xref: FMA:61975 +xref: http://www.snomedbrowser.com/Codes/Details/361483008 +xref: Lamina:terminalis +xref: VHOG:0001547 +is_a: UBERON:0014532 {source="FMA"} ! white matter lamina of cerebral hemisphere +relationship: develops_from UBERON:0005078 ! lamina terminalis of neural tube +relationship: immediate_transformation_of UBERON:0005078 ! lamina terminalis of neural tube +relationship: part_of UBERON:0002437 {source="FMA"} ! cerebral hemisphere white matter + +[Term] +id: UBERON:0015118 +name: obsolete neocortical column +def: "A group of neurons in the cortex of the brain which can be successively penetrated by a probe inserted perpendicularly to the cortical surface, and which have nearly identical receptive fields." [http://en.wikipedia.org/wiki/Cortical_column] +synonym: "cortical column" BROAD [http://en.wikipedia.org/wiki/Cortical_column] +is_obsolete: true +consider: Wikipedia:Cortical_column + +[Term] +id: UBERON:0015119 +name: scolex +def: "The anterior organ of a tapeworm used for attachment to the host intestine." [BTO:0002305, http://en.wikipedia.org/wiki/Cestoda#Scolex, http://tropmed.org/dictionary/] +synonym: "holdfast" RELATED [BTO:0002305] +synonym: "holdfast organ" RELATED [] +synonym: "tapeworm head" RELATED [] +xref: BTO:0002305 +is_a: UBERON:0000062 ! organ +relationship: in_anterior_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0015120 +name: right outer canthus +def: "A outer canthus that is in_the_right_side_of a head." [OBOL:automatic] +synonym: "lateral angle of right eye" RELATED [FMA:59317] +synonym: "lateral canthus of right eye" RELATED [FMA:59317] +synonym: "right angle of eye" EXACT [] +synonym: "right lateral canthus" RELATED [FMA:59317] +synonym: "right lateral palpebral commissure" EXACT [FMA:59317] +xref: FMA:59317 +is_a: UBERON:0006726 ! outer canthus +intersection_of: UBERON:0006726 ! outer canthus +intersection_of: in_right_side_of UBERON:0000033 ! head +relationship: in_right_side_of UBERON:0000033 ! head + +[Term] +id: UBERON:0015121 +name: left outer canthus +def: "A outer canthus that is in_the_left_side_of a head." [OBOL:automatic] +synonym: "lateral angle of left eye" RELATED [FMA:59318] +synonym: "lateral canthus of left eye" RELATED [FMA:59318] +synonym: "left angle of eye" EXACT [] +synonym: "left lateral canthus" RELATED [FMA:59318] +synonym: "left lateral palpebral commissure" EXACT [FMA:59318] +xref: FMA:59318 +is_a: UBERON:0006726 ! outer canthus +intersection_of: UBERON:0006726 ! outer canthus +intersection_of: in_left_side_of UBERON:0000033 ! head +relationship: in_left_side_of UBERON:0000033 ! head + +[Term] +id: UBERON:0015122 +name: anatomical line between outer canthi +def: "An anatomical line of the face that connects the two outer (lateral) canthi of the eye. The length of this line is known as the outer canthal distance." [http://orcid.org/0000-0002-6601-2165] +synonym: "inter lateral canthal line" EXACT [] +synonym: "inter outer canthal line" EXACT [] +is_a: UBERON:0006800 ! anatomical line +intersection_of: UBERON:0006800 ! anatomical line +intersection_of: connects UBERON:0015120 ! right outer canthus +intersection_of: connects UBERON:0015121 ! left outer canthus +intersection_of: part_of UBERON:0001456 ! face +relationship: connects UBERON:0015120 ! right outer canthus +relationship: connects UBERON:0015121 ! left outer canthus +relationship: part_of UBERON:0001456 ! face + +[Term] +id: UBERON:0015125 +name: anterior internodal tract +def: "Internodal tract which consists of the atrial and atrial septal branches." [FMA:9480] +synonym: "anterior internodal fasciculus" EXACT [FMA:9480] +synonym: "anterior internodal tract muscle tissue" EXACT [FMA:9480] +xref: FMA:9480 +is_a: UBERON:0009966 {source="FMA"} ! internodal tract +disjoint_from: UBERON:0015127 {source="lexical"} ! posterior internodal tract + +[Term] +id: UBERON:0015126 +name: middle internodal tract +synonym: "internodal tract of Wenckebach" EXACT [FMA:9482] +synonym: "middle internodal fasciculus" EXACT [FMA:9482] +synonym: "middle internodal tract muscle tissue" EXACT [FMA:9482] +xref: FMA:9482 +is_a: UBERON:0009966 {source="FMA"} ! internodal tract + +[Term] +id: UBERON:0015127 +name: posterior internodal tract +synonym: "internodal tract of Thorel" EXACT [FMA:9483] +synonym: "posterior internodal fasciculus" EXACT [FMA:9483] +synonym: "posterior internodal tract muscle tissue" EXACT [FMA:9483] +xref: FMA:9483 +is_a: UBERON:0009966 {source="FMA"} ! internodal tract + +[Term] +id: UBERON:0015128 +name: subepicardial layer of epicardium +synonym: "perimysial connective tissue of subepicardium" EXACT [FMA:83105] +synonym: "subepicardial connective tissue" EXACT [FMA:83105] +xref: FMA:83105 +is_a: UBERON:0007188 ! mesothelium of serous pericardium +relationship: part_of UBERON:0002348 {source="FMA"} ! epicardium + +[Term] +id: UBERON:0015129 +name: epicardial fat +def: "Visceral intrapericardial fat contiguous with the myocardial surface." [https://doi.org/10.5935/abc.20130138] +synonym: "epicardial adipose tissue" EXACT [] +synonym: "pericardial adipose tissue" EXACT [] +xref: FMA:9871 +xref: http://www.snomedbrowser.com/Codes/Details/42267001 +is_a: UBERON:0003837 ! thoracic segment connective tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0035814 ! pericardial fat +intersection_of: UBERON:0001013 ! adipose tissue +intersection_of: adjacent_to UBERON:0002348 ! epicardium +intersection_of: adjacent_to UBERON:0002425 ! visceral serous pericardium +intersection_of: surrounds UBERON:0000948 ! heart +relationship: adjacent_to UBERON:0002348 ! epicardium +relationship: adjacent_to UBERON:0002425 ! visceral serous pericardium +relationship: part_of UBERON:0015128 ! subepicardial layer of epicardium + +[Term] +id: UBERON:0015130 +name: connective tissue of prostate gland +def: "A portion of connective tissue that is part of a prostate gland." [OBOL:automatic] +synonym: "connective tissue of prostate" EXACT [FMA:74165] +xref: FMA:74165 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0002367 ! prostate gland +relationship: part_of UBERON:0002367 ! prostate gland + +[Term] +id: UBERON:0015131 +name: subepithelial connective tissue of prostatic gland +xref: FMA:74189 +is_a: UBERON:0015130 {source="FMA"} ! connective tissue of prostate gland + +[Term] +id: UBERON:0015132 +name: extralobar lactiferous duct +xref: FMA:58069 +is_a: UBERON:0001765 {source="FMA"} ! mammary duct + +[Term] +id: UBERON:0015133 +name: terminal lactiferous duct +synonym: "branch of lactiferous duct proper" EXACT [FMA:58260] +synonym: "lobular lactiferous duct" EXACT [FMA:58260] +xref: FMA:58260 +is_a: UBERON:0001765 {source="FMA"} ! mammary duct + +[Term] +id: UBERON:0015134 +name: main lactiferous duct +xref: FMA:62102 +is_a: UBERON:0001765 {source="FMA"} ! mammary duct + +[Term] +id: UBERON:0015135 +name: primary lactiferous duct +xref: FMA:74428 +is_a: UBERON:0001765 {source="FMA"} ! mammary duct + +[Term] +id: UBERON:0015136 +name: secondary lactiferous duct +xref: FMA:74430 +is_a: UBERON:0001765 {source="FMA"} ! mammary duct + +[Term] +id: UBERON:0015137 +name: tertiary lactiferous duct +xref: FMA:74431 +is_a: UBERON:0001765 {source="FMA"} ! mammary duct + +[Term] +id: UBERON:0015138 +name: quarternary lactiferous duct +xref: FMA:74432 +is_a: UBERON:0001765 {source="FMA"} ! mammary duct + +[Term] +id: UBERON:0015139 +name: infundibulum of gallbladder +def: "The tapering portion of the gall bladder that narrows to form the neck and cystic duct." [MP:0009465] +subset: pheno_slim +synonym: "gallbladder infundibulum" EXACT [FMA:76652] +synonym: "infundibulum vesicae biliaris" EXACT LATIN [MP:0009465] +xref: FMA:76652 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: contributes_to_morphology_of UBERON:0002110 ! gall bladder +relationship: part_of UBERON:0002110 {source="FMA"} ! gall bladder + +[Term] +id: UBERON:0015142 +name: falciform fat +def: "A large fat pad that is located at the base of the abdominal wall, in the falciform ligament of the liver." [MURDOCH:768] +synonym: "falciform fat depot" RELATED [] +synonym: "falciform ligament fat pad" RELATED [] +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0003427 ! abdominal fat pad +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0015143 ! mesenteric fat pad +intersection_of: UBERON:0003916 ! fat pad +intersection_of: part_of UBERON:0001247 ! falciform ligament +relationship: part_of UBERON:0001247 ! falciform ligament + +[Term] +id: UBERON:0015143 +name: mesenteric fat pad +def: "Encapsulated adipose tissue associated with the mesentery" [MP:0008903] +synonym: "mesenteric fat depot" EXACT [MP:0008903] +is_a: UBERON:0003916 ! fat pad +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0003916 ! fat pad +intersection_of: part_of UBERON:0002095 ! mesentery +relationship: part_of UBERON:0002095 ! mesentery + +[Term] +id: UBERON:0015144 +name: autopod hair +def: "A strand of hair that is part of a autopod region." [OBOL:automatic] +synonym: "hair of hand/foot" EXACT [] +synonym: "hand/foot hair" EXACT [] +synonym: "paw hair" NARROW [] +is_a: UBERON:0037459 ! hair of limb +intersection_of: UBERON:0001037 ! strand of hair +intersection_of: part_of UBERON:0002470 ! autopod region +relationship: part_of UBERON:0002470 ! autopod region + +[Term] +id: UBERON:0015145 +name: pes hair +def: "A strand of hair that is part of a pes." [OBOL:automatic] +synonym: "foot hair" EXACT [] +synonym: "hair of foot" EXACT [] +synonym: "hind foot hair" EXACT [] +synonym: "hind paw hair" NARROW [] +is_a: UBERON:0015144 ! autopod hair +intersection_of: UBERON:0001037 ! strand of hair +intersection_of: part_of UBERON:0002387 ! pes +relationship: part_of UBERON:0002387 ! pes + +[Term] +id: UBERON:0015146 +name: manus hair +def: "A strand of hair that is part of a manus." [OBOL:automatic] +synonym: "front paw hair" NARROW [] +synonym: "hair of hand" EXACT [] +synonym: "hand hair" EXACT [] +is_a: UBERON:0015144 ! autopod hair +intersection_of: UBERON:0001037 ! strand of hair +intersection_of: part_of UBERON:0002398 ! manus +relationship: part_of UBERON:0002398 ! manus + +[Term] +id: UBERON:0015147 +name: pinna hair +def: "A strand of hair that is part of a pinna." [OBOL:automatic] +subset: pheno_slim +synonym: "ear hair" RELATED [] +is_a: UBERON:0022279 ! strand of hair on external ear +intersection_of: UBERON:0001037 ! strand of hair +intersection_of: part_of UBERON:0001757 ! pinna +relationship: part_of UBERON:0001757 ! pinna + +[Term] +id: UBERON:0015148 +name: tail hair +def: "A strand of hair that is part of a tail." [OBOL:automatic] +subset: pheno_slim +xref: EMAPA:37971 {source="MA:th"} +is_a: UBERON:0001037 ! strand of hair +intersection_of: UBERON:0001037 ! strand of hair +intersection_of: part_of UBERON:0002415 ! tail +relationship: part_of UBERON:0002415 ! tail + +[Term] +id: UBERON:0015149 +name: ventral hair +def: "A strand of hair that is part of a ventrum." [OBOL:automatic] +synonym: "ventral coat hair" RELATED [] +is_a: UBERON:0001037 ! strand of hair +intersection_of: UBERON:0001037 ! strand of hair +intersection_of: part_of UBERON:0013235 ! ventrum +relationship: part_of UBERON:0013235 ! ventrum + +[Term] +id: UBERON:0015150 +name: dorsal hair +def: "A strand of hair that is part of a dorsum." [OBOL:automatic] +synonym: "back hair" RELATED [] +synonym: "dorsal coat hair" RELATED [] +synonym: "hair of back" RELATED [FMA:54320] +xref: FMA:54320 +is_a: UBERON:0001037 ! strand of hair +intersection_of: UBERON:0001037 ! strand of hair +intersection_of: part_of UBERON:0001137 ! dorsum +relationship: part_of UBERON:0001137 ! dorsum + +[Term] +id: UBERON:0015151 +name: Harderian gland duct +def: "A duct that is part of a Harderian gland. opens into the conjunctival sac at the base of the nictitating membrane." [http://www.ncbi.nlm.nih.gov/pubmed/7559104] +synonym: "duct of Harder's gland" EXACT [] +synonym: "duct of Harderian gland" EXACT [] +synonym: "Harderian duct" RELATED [] +is_a: UBERON:0000058 ! duct +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000058 ! duct +intersection_of: part_of UBERON:0004187 ! Harderian gland +relationship: part_of UBERON:0004187 ! Harderian gland + +[Term] +id: UBERON:0015152 +name: gland of ocular region +def: "A gland that is typically found in or near the orbital region, in or around either the medial or lateral canthi, and is typically associated with secretions onto the eyeball or associated ducts. Includes the Harderian, nictitans and lacrimal glands." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/614] +synonym: "ocular gland" EXACT [] +synonym: "orbital gland" RELATED [] +is_a: UBERON:0002530 ! gland +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0004088 ! orbital region +property_value: dc-contributor https://github.com/cmungall +relationship: part_of UBERON:0035639 {source="inferred"} ! ocular adnexa + +[Term] +id: UBERON:0015153 +name: medial gland of ocular region +def: "A gland that is located in the ocular region, nearer the inner canthi. Typically associated with or part of the nictitating membrane, when present" [http://www.ncbi.nlm.nih.gov/pubmed/7559104] +synonym: "Harderian gland" NARROW [] +synonym: "medial ocular gland" EXACT [] +synonym: "medial orbital gland" EXACT [] +is_a: UBERON:0015152 ! gland of ocular region +disjoint_from: UBERON:0015154 {source="lexical"} ! lateral gland of orbital region + +[Term] +id: UBERON:0015154 +name: lateral gland of orbital region +def: "A gland that is located in or around the ocular region, nearer the outer canthi." [http://orcid.org/0000-0002-6601-2165] +synonym: "lateral ocular gland" EXACT [] +synonym: "lateral orbital gland" EXACT [] +is_a: UBERON:0015152 ! gland of ocular region + +[Term] +id: UBERON:0015155 +name: conjunctival space +def: "A anatomical space that is enclosed by a conjunctiva." [OBOL:automatic] +synonym: "cavity of conjunctival sac" EXACT [FMA:59083] +synonym: "conjunctival sac cavity" EXACT [FMA:59083] +synonym: "subbrillar space" NARROW [http://www.ncbi.nlm.nih.gov/pubmed/7559104, NCBITaxon:8570] +synonym: "subconjunctival space" EXACT [] +xref: FMA:59083 +xref: http://www.snomedbrowser.com/Codes/Details/280957009 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0001811 ! conjunctiva +relationship: luminal_space_of UBERON:0001811 ! conjunctiva +relationship: part_of UBERON:0001811 ! conjunctiva + +[Term] +id: UBERON:0015156 +name: terminal branch of ophthalmic artery +def: "The two terminal branches of the ophthalmic artery in humans are the dorsal nasal artery and the supratrochlear artery" [http://en.wikipedia.org/wiki/Dorsal_nasal_artery, http://en.wikipedia.org/wiki/Supratrochlear_artery] +xref: FMA:51956 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: branching_part_of UBERON:0001619 ! ophthalmic artery +relationship: part_of UBERON:0001619 ! ophthalmic artery + +[Term] +id: UBERON:0015157 +name: zygomatico-orbital artery +def: "The middle temporal artery occasionally gives off a zygomatico-orbital branch, which runs along the upper border of the zygomatic arch, between the two layers of the temporal fascia, to the lateral angle of the orbit. This branch, which may arise directly from the superficial temporal artery, supplies the Orbicularis oculi, and anastomoses with the lacrimal and palpebral branches of the ophthalmic artery." [http://en.wikipedia.org/wiki/Zygomatico-orbital_artery] +synonym: "zygomaticooerbital branch" RELATED [http://en.wikipedia.org/wiki/Zygomatico-orbital_artery] +synonym: "zygomaticoorbital branch" RELATED [http://en.wikipedia.org/wiki/Zygomatico-orbital_artery] +xref: FMA:49663 +xref: http://www.snomedbrowser.com/Codes/Details/146753008 +xref: Zygomatico-orbital:artery +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: branching_part_of UBERON:0001614 {source="FMA"} ! superficial temporal artery +relationship: part_of UBERON:0001614 ! superficial temporal artery + +[Term] +id: UBERON:0015158 +name: ophthalmotemporal branch of external ophthalmic artery +comment: The blood supply to the (Harderian) gland has been reported in greatest detail in the sparrow Passer domesticus (Slonaker, 1918), where it is derived through the ophthalmotemporal branch of the external ophthalmic artery http://www.ncbi.nlm.nih.gov/pubmed/7559104 +synonym: "ophthalmotemporal artery" RELATED [] +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: branching_part_of UBERON:0001619 ! ophthalmic artery +relationship: part_of UBERON:0001619 ! ophthalmic artery +relationship: supplies UBERON:0004187 {source="http://www.ncbi.nlm.nih.gov/pubmed/7559104"} ! Harderian gland + +[Term] +id: UBERON:0015160 +name: supraorbital artery +def: "The supraorbital artery is an artery of the head. It springs from the ophthalmic artery as that vessel is crossing over to the medial side of the optic nerve." [http://en.wikipedia.org/wiki/Supraorbital_artery] +synonym: "arteria supraorbitalis" EXACT LATIN [http://en.wikipedia.org/wiki/Supraorbital_artery] +synonym: "supra-orbital artery" EXACT [FMA:49973] +synonym: "supraorbital artery" EXACT [FMA:49973] +synonym: "supraorbital branch of external ophthalmic artery" RELATED [] +xref: FMA:49973 +xref: http://www.snomedbrowser.com/Codes/Details/369330002 +xref: Supraorbital:artery +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: branching_part_of UBERON:0001619 ! ophthalmic artery +relationship: part_of UBERON:0001619 ! ophthalmic artery +relationship: supplies UBERON:0001604 ! levator palpebrae superioris +relationship: supplies UBERON:0001760 ! frontal sinus + +[Term] +id: UBERON:0015161 +name: inferior branch of oculomotor nerve +def: "The inferior branch of the oculomotor nerve or the inferior division, the larger, divides into three branches. One passes beneath the optic nerve to the medial rectus. Another, to the inferior rectus. The third and longest runs forward between the inferior recti and lateralis to the inferior oblique. From the last a short thick branch is given off to the lower part of the ciliary ganglion, and forms its short root. All these branches enter the muscles on their ocular surfaces, with the exception of the nerve to the inferior oblique, which enters the muscle at its posterior border." [http://en.wikipedia.org/wiki/Inferior_branch_of_oculomotor_nerve] +synonym: "inferior division of oculomotor nerve" RELATED [FMA:52573] +synonym: "inferior ramus of oculomotor nerve" EXACT [FMA:52573] +synonym: "oculomotor nerve inferior division" EXACT [FMA:52573] +synonym: "ramus inferior (nervus oculomotorius [III])" EXACT [FMA:52573] +synonym: "ramus inferior nervi oculomotorii" EXACT LATIN [http://en.wikipedia.org/wiki/Inferior_branch_of_oculomotor_nerve] +synonym: "ramus inferior nervus oculomotorii" EXACT LATIN [FMA:52573, FMA:TA] +synonym: "ventral ramus of occulomotor nerve" RELATED [AAO:0010632] +synonym: "ventral ramus of oculomotor nerve" RELATED [AAO:0010632] +xref: AAO:0010632 +xref: FMA:52573 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2232 +xref: http://en.wikipedia.org/wiki/Inferior_branch_of_oculomotor_nerve +xref: http://www.snomedbrowser.com/Codes/Details/280206003 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0011779 ! nerve of head region +intersection_of: UBERON:0001021 ! nerve +intersection_of: branching_part_of UBERON:0001643 ! oculomotor nerve +intersection_of: supplies UBERON:0006322 ! inferior rectus extraocular muscle +relationship: branching_part_of UBERON:0001643 ! oculomotor nerve +relationship: part_of UBERON:0001643 ! oculomotor nerve +relationship: supplies UBERON:0001602 {source="AAO", source="Wikipedia"} ! medial rectus extraocular muscle +relationship: supplies UBERON:0006322 {source="AAO", source="Wikipedia"} ! inferior rectus extraocular muscle + +[Term] +id: UBERON:0015162 +name: superior branch of oculomotor nerve +def: "The superior branch of the oculomotor nerve or the superior division, the smaller, passes medialward over the optic nerve. It supplies the Superior rectus and Levator palpebrae superioris." [http://en.wikipedia.org/wiki/Superior_branch_of_oculomotor_nerve] +synonym: "dorsal ramus of occulomotor nerve" RELATED [AAO:0010628] +synonym: "dorsal ramus of oculomotor nerve" RELATED [AAO:0010628] +synonym: "oculomotor nerve superior division" EXACT [FMA:52572] +synonym: "ramus superior (nervus oculomotorius [III])" EXACT [FMA:52572] +synonym: "ramus superior nervi oculomotorii" EXACT LATIN [http://en.wikipedia.org/wiki/Superior_branch_of_oculomotor_nerve] +synonym: "ramus superior nervus oculomotorii" EXACT LATIN [FMA:52572, FMA:TA] +synonym: "superior division of oculomotor nerve" RELATED [FMA:52572] +synonym: "superior ramus of oculomotor nerve" EXACT [FMA:52572] +xref: AAO:0010628 +xref: FMA:52572 +xref: http://en.wikipedia.org/wiki/Superior_branch_of_oculomotor_nerve +xref: http://www.snomedbrowser.com/Codes/Details/280205004 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0011779 ! nerve of head region +intersection_of: UBERON:0001021 ! nerve +intersection_of: branching_part_of UBERON:0001643 ! oculomotor nerve +intersection_of: supplies UBERON:0006323 ! superior rectus extraocular muscle +relationship: branching_part_of UBERON:0001643 ! oculomotor nerve +relationship: part_of UBERON:0001643 ! oculomotor nerve +relationship: supplies UBERON:0001604 ! levator palpebrae superioris +relationship: supplies UBERON:0006323 ! superior rectus extraocular muscle + +[Term] +id: UBERON:0015165 +name: multi-unit eye +def: "An eye consisting of multiple light-sensing organs" [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/21062451] +is_a: UBERON:0000970 ! eye +intersection_of: UBERON:0000970 ! eye +intersection_of: composed_primarily_of UBERON:0000020 ! sense organ +relationship: composed_primarily_of UBERON:0000020 ! sense organ +relationship: present_in_taxon NCBITaxon:6340 {notes="present on tentacular crown", source="http://www.ncbi.nlm.nih.gov/pubmed/21062451"} +relationship: present_in_taxon NCBITaxon:6544 {notes="present on mantle edge in arcacean Bivalvia", source="http://www.ncbi.nlm.nih.gov/pubmed/21062451"} +relationship: present_in_taxon NCBITaxon:7588 {notes="The eyes (optic cushions) on the oral surface of Asteroida (Echinodermata), close to the base of the terminal tentacles, are also composed of a number of simple ocelli - as many as 80-200 in certain species", source="http://www.ncbi.nlm.nih.gov/pubmed/21062451"} + +[Term] +id: UBERON:0015169 +name: tapetum +def: "Light reflecting layer found in a variety of different types of eye." [http://orcid.org/0000-0002-6601-2165] +subset: functional_classification +synonym: "tapetal layer" EXACT [] +synonym: "tapetum layer" EXACT [] +xref: SPD:0000343 +is_a: UBERON:0000957 ! lamina +relationship: part_of UBERON:0000970 ! eye + +[Term] +id: UBERON:0015170 +name: nauplius eye +def: "An eye that consists of a cluster of three or four median eyes that form a single structural unit but are separated from one another by pigment layers" [http://www.ncbi.nlm.nih.gov/pubmed/21062451] +synonym: "four-partite eye" NARROW [http://www.ncbi.nlm.nih.gov/pubmed/21062451] +synonym: "three-partite eye" NARROW [http://www.ncbi.nlm.nih.gov/pubmed/21062451] +is_a: UBERON:0000970 ! eye +relationship: has_part UBERON:0003211 ! median eye + +[Term] +id: UBERON:0015171 +name: uterine spiral artery +def: "A corkscrew-like artery in premenstrual or progestational endometrium; uterine spiral arteries play a vital role in supplying nutrients to the placenta and fetus, and are thus remodeled into highly dilated inelastic vessels by the action of invading trophoblast (physiological change)" [J:100668, J:117841, MGI:anna, MP:0012726] +subset: pheno_slim +synonym: "endometrial spiral arteriole" EXACT [] +synonym: "endometrial spiral artery" EXACT [BTO:0003371] +synonym: "spiral arteries" RELATED PLURAL [] +synonym: "spiral artery" BROAD [BTO:0003371] +synonym: "spiral artery" RELATED [] +xref: BTO:0003371 +xref: EMAPA:36612 +xref: http://linkedlifedata.com/resource/umls/id/C1519470 +xref: http://www.snomedbrowser.com/Codes/Details/24628006 +xref: NCIT:C33592 +xref: Spiral:artery +is_a: UBERON:0001637 {source="BTO"} ! artery +is_a: UBERON:0015172 ! endometrial blood vessel +disjoint_from: UBERON:0015173 ! helicine branch of uterine artery +relationship: supplies UBERON:0001295 ! endometrium + +[Term] +id: UBERON:0015172 +name: endometrial blood vessel +def: "A blood vessel that is part of a endometrium." [OBOL:automatic] +synonym: "blood vessel of endometrium" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/254200009 +is_a: UBERON:0001981 ! blood vessel +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0001295 ! endometrium +relationship: part_of UBERON:0001295 ! endometrium + +[Term] +id: UBERON:0015173 +name: helicine branch of uterine artery +def: "The helicine branches of uterine artery (or helicine arterioles, or spiral arteries) are small arteries which temporarily supply the endometrium of the uterus during the luteal phase of the menstrual cycle. In histology, identifying the presence of these arteries is one of the most useful techniques in identifying the phase of the cycle." [http://en.wikipedia.org/wiki/Helicine_branches_of_uterine_artery] +comment: Notes: The straight branches of the radial arteries of the uterus terminate in capillaries in the basal layer, while the spiral or coiled branches penetrate to the surface epithelium +synonym: "arcuate artery of uterus" EXACT [] +synonym: "helicine arteriole" RELATED INCONSISTENT [http://en.wikipedia.org/wiki/Helicine_branches_of_uterine_artery] +synonym: "helicine artery of uterus" EXACT [FMA:21101] +synonym: "rami helicini uterinae" EXACT LATIN [http://en.wikipedia.org/wiki/Helicine_branches_of_uterine_artery] +synonym: "spiral arteries" RELATED INCONSISTENT [http://en.wikipedia.org/wiki/Helicine_branches_of_uterine_artery] +synonym: "spiral artery" RELATED INCONSISTENT [http://en.wikipedia.org/wiki/Helicine_branches_of_uterine_artery] +xref: FMA:21101 +xref: http://en.wikipedia.org/wiki/Helicine_branches_of_uterine_artery +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0015177 ! helicine artery +intersection_of: UBERON:0015177 ! helicine artery +intersection_of: branching_part_of UBERON:0002493 ! uterine artery +relationship: branching_part_of UBERON:0002493 ! uterine artery +relationship: part_of UBERON:0001296 ! myometrium +relationship: part_of UBERON:0002493 ! uterine artery + +[Term] +id: UBERON:0015174 +name: helicine artery of penis +def: "The helicine arteries of penis are arteries in the penis. They are found in the corpora cavernosa penis. They are involved in the process of erection." [http://en.wikipedia.org/wiki/Helicine_arteries_of_penis] +synonym: "arteriae helicinae penis" EXACT LATIN [http://en.wikipedia.org/wiki/Helicine_arteries_of_penis] +synonym: "helicine arteries" RELATED PLURAL [] +xref: FMA:19796 +xref: http://en.wikipedia.org/wiki/Helicine_arteries_of_penis +xref: http://www.snomedbrowser.com/Codes/Details/279924008 +is_a: UBERON:0015177 ! helicine artery +is_a: UBERON:0036269 ! penis blood vessel +intersection_of: UBERON:0015177 ! helicine artery +intersection_of: part_of UBERON:0000989 ! penis +relationship: part_of UBERON:0004713 {source="FMA"} ! corpus cavernosum penis +relationship: supplies UBERON:0000989 ! penis + +[Term] +id: UBERON:0015177 +name: helicine artery +def: "Either the helicine artery of the penis or the helicine artery of the uterus" [http://en.wikipedia.org/wiki/Helicine_arteries] +synonym: "helicine arteries" EXACT [] +xref: Helicine:arteries +xref: http://www.snomedbrowser.com/Codes/Details/279924008 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0005156 ! reproductive structure +union_of: UBERON:0015173 ! helicine branch of uterine artery +union_of: UBERON:0015174 ! helicine artery of penis + +[Term] +id: UBERON:0015178 +name: somite border +def: "A region of somite adjacent to presomitic mesoderm." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "inter-somited border" RELATED [] +synonym: "intersomitic boundary" RELATED [] +synonym: "intersomitic fissure" RELATED [] +synonym: "intersomitic junction" RELATED [XAO:0004074] +synonym: "segmental border" RELATED [] +synonym: "somite boundary" RELATED [ZFA:0001462] +xref: TAO:0001462 +xref: XAO:0004074 +xref: ZFA:0001462 +is_a: UBERON:0007651 ! anatomical junction +intersection_of: UBERON:0007651 ! anatomical junction +intersection_of: adjacent_to UBERON:0003059 ! presomitic mesoderm +intersection_of: part_of UBERON:0002329 ! somite +relationship: adjacent_to UBERON:0003059 ! presomitic mesoderm +relationship: part_of UBERON:0002329 ! somite + +[Term] +id: UBERON:0015179 +name: somite boundary epithelium +def: "Epithelium located in the intersomitic region." [XAO:0004077, XAO:EJS] +synonym: "intersomitic epithelium" EXACT [XAO:0004077] +synonym: "intersomitic membrane" EXACT [XAO:0004077] +xref: XAO:0004077 +is_a: UBERON:0000483 ! epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0015178 ! somite border +relationship: part_of UBERON:0015178 ! somite border + +[Term] +id: UBERON:0015180 +name: neck of talus +def: "The neck of talus is directed forward and medialward, and comprises the constricted portion of the bone between the body and the oval head. Its upper and medial surfaces are rough, for the attachment of ligaments; its lateral surface is concave and is continuous below with the deep groove for the interosseous talocalcaneal ligament." [http://en.wikipedia.org/wiki/Neck_of_talus] +subset: pheno_slim +synonym: "collum tali" RELATED [http://en.wikipedia.org/wiki/Neck_of_talus] +synonym: "talar neck" EXACT [FMA:33636] +synonym: "talus neck" EXACT [FMA:33636] +xref: FMA:33636 +xref: http://en.wikipedia.org/wiki/Neck_of_talus +xref: http://www.snomedbrowser.com/Codes/Details/182104001 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0018664 ! neck of bone element +intersection_of: UBERON:0001560 ! neck of organ +intersection_of: part_of UBERON:0002395 ! talus +relationship: part_of UBERON:0002395 ! talus + +[Term] +id: UBERON:0015181 +name: neck of tooth +def: "The slightly constricted part of a tooth, between the crown and the root." [http://www.medilexicon.com/medicaldictionary.php?s=neck+of+tooth] +synonym: "cervical margin of tooth" RELATED [http://www.medilexicon.com/medicaldictionary.php?s=neck+of+tooth] +synonym: "cervical zone of tooth" RELATED [http://www.medilexicon.com/medicaldictionary.php?s=neck+of+tooth] +synonym: "cervix dentis" EXACT LATIN [FMA:TA] +synonym: "cervix of tooth" EXACT [FMA:55627] +synonym: "collumn dentis" EXACT LATIN [ncithesaurus:Collum_Dentis] +synonym: "dental neck" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=neck+of+tooth] +synonym: "tooth neck" EXACT [FMA:55627] +xref: FMA:55627 +xref: http://www.snomedbrowser.com/Codes/Details/28638008 +xref: NCIT:C32346 +is_a: UBERON:0001560 ! neck of organ +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001560 ! neck of organ +intersection_of: part_of UBERON:0001091 ! calcareous tooth +relationship: part_of UBERON:0001091 ! calcareous tooth + +[Term] +id: UBERON:0015189 +name: perineural vascular plexus +def: "The capillary bed that initially surrounds the relative avascular brain and spinal cord; the perineural vascular plexus (PNVP) is the precursor to the blood brain barrier formed by angioblasts which migrate away from somites and is recruited to surround the neural tube in response to VEGF; vascularization of the brain and spinal cord occurs via angiogenesis as sprouting vessels from the PNVP invade the neuroepithelium and grow inward toward the ventricular lumen[MP]." [MP:0012732] +synonym: "PNVP" EXACT ABBREVIATION [MGI:anna] +xref: EMAPA:35678 +is_a: UBERON:0013141 ! capillary bed +relationship: part_of UBERON:0001016 ! nervous system + +[Term] +id: UBERON:0015202 +name: lymph heart +def: "A circulatory organ that is reponsible for pumping lymph throughout the body." [http://orcid.org/0000-0002-6601-2165] +xref: Lymph:heart +is_a: UBERON:0015229 ! accessory circulatory organ +relationship: present_in_taxon NCBITaxon:8342 +relationship: present_in_taxon NCBITaxon:8493 +relationship: present_in_taxon NCBITaxon:8570 + +[Term] +id: UBERON:0015203 +name: non-connected functional system +def: "An anatomical group whose component structures share a common function." [AEO:0000093, AEO:JB, FBbt:00007278, FBC:DOS] +xref: AEO:0000093 +xref: FBbt:00007278 +is_a: UBERON:0000467 ! anatomical system + +[Term] +id: UBERON:0015204 +name: glandular system +def: "A non-connected functional system that is composed primarily of a gland." [OBOL:automatic] +xref: EHDAA2:0002223 +is_a: UBERON:0015203 ! non-connected functional system +intersection_of: UBERON:0015203 ! non-connected functional system +intersection_of: composed_primarily_of UBERON:0002530 ! gland +relationship: composed_primarily_of UBERON:0002530 ! gland + +[Term] +id: UBERON:0015212 +name: lateral structure +def: "Any structure that is placed on one side of the left-right axis of a bilaterian." [http://orcid.org/0000-0002-6601-2165] +subset: grouping_class +subset: non_informative +is_a: UBERON:0000061 ! anatomical structure +intersection_of: UBERON:0000061 ! anatomical structure +intersection_of: in_lateral_side_of UBERON:0000465 ! material anatomical entity +relationship: in_lateral_side_of UBERON:0000465 ! material anatomical entity + +[Term] +id: UBERON:0015213 +name: barnacle cement gland +def: "Typical barnacles, common name of the sedentary crustacean marine animals constituting the subclass Cirripedia, attach to the substrate by means of an exceedingly adhesive cement, produced by a cement gland, and secrete a shell, or carapace, of calcareous (limestone) plates, around themselves." [BTO:0002738] +synonym: "cement gland" BROAD [BTO:0002738] +synonym: "cementary gland" RELATED [BTO:0002738] +xref: BTO:0002738 +is_a: UBERON:0002365 {source="BTO"} ! exocrine gland + +[Term] +id: UBERON:0015214 +name: arcuate ligament +def: "A ligament that is part of a diaphragm." [OBOL:automatic] +xref: EMAPA:19236 +xref: FMA:58280 +is_a: UBERON:0000211 ! ligament +is_a: UBERON:0005181 ! thoracic segment organ +intersection_of: UBERON:0000211 ! ligament +intersection_of: part_of UBERON:0001103 ! diaphragm +relationship: part_of UBERON:0001103 ! diaphragm + +[Term] +id: UBERON:0015215 +name: median arcuate ligament +def: "The median arcuate ligament is a ligament under the diaphragm that connects the right and left crura of diaphragm." [http://en.wikipedia.org/wiki/Median_arcuate_ligament] +xref: FMA:58281 +xref: http://en.wikipedia.org/wiki/Median_arcuate_ligament +is_a: UBERON:0015214 ! arcuate ligament + +[Term] +id: UBERON:0015216 +name: nasal meatus +xref: EMAPA:18593 +xref: FMA:53146 +xref: http://www.snomedbrowser.com/Codes/Details/310212002 +is_a: UBERON:0002553 ! anatomical cavity +relationship: part_of UBERON:0000004 {source="EMAPA"} ! nose + +[Term] +id: UBERON:0015219 +name: middle nasal meatus +def: "The middle meatus is a nasal opening or canal situated between the middle and inferior conchae, and extends from the anterior to the posterior end of the latter. The lateral wall of this meatus can be satisfactorily studied only after the removal of the middle concha. On it is a curved fissure, the hiatus semilunaris, limited below by the edge of the uncinate process of the ethmoid and above by an elevation named the bulla ethmoidalis; the middle ethmoidal cells are contained within this bulla and open on or near to it. Through the hiatus semilunaris the meatus communicates with a curved passage termed the infundibulum, which communicates in front with the anterior ethmoidal cells and in rather more than fifty percent of skulls is continued upward as the frontonasal duct into the frontal air-sinus; when this continuity fails, the frontonasal duct opens directly into the anterior part of the meatus. Below the bulla ethmoidalis and hidden by the uncinate process of the ethmoid is the opening of the maxillary sinus (ostium maxillare); an accessory opening is frequently present above the posterior part of the inferior nasal concha." [http://en.wikipedia.org/wiki/Middle_nasal_meatus] +synonym: "middle meatus" RELATED [http://en.wikipedia.org/wiki/Middle_nasal_meatus] +synonym: "middle meatus of the nose" RELATED [http://en.wikipedia.org/wiki/Middle_nasal_meatus] +xref: EMAPA:19277 +xref: FMA:53139 +xref: http://en.wikipedia.org/wiki/Middle_nasal_meatus +xref: http://www.snomedbrowser.com/Codes/Details/361925009 +is_a: UBERON:0015216 ! nasal meatus + +[Term] +id: UBERON:0015220 +name: inferior nasal meatus +def: "The inferior meatus, the largest of the three meatuses of the nose, is the space between the inferior concha and the floor of the nasal cavity. It extends almost the entire length of the lateral wall of the nose, is broader in front than behind, and presents anteriorly the lower orifice of the nasolacrimal canal." [http://en.wikipedia.org/wiki/Inferior_nasal_meatus] +synonym: "inferior meatus" RELATED [http://en.wikipedia.org/wiki/Inferior_nasal_meatus] +xref: EMAPA:19278 +xref: FMA:53140 +xref: http://en.wikipedia.org/wiki/Inferior_nasal_meatus +xref: http://www.snomedbrowser.com/Codes/Details/310214001 +is_a: UBERON:0015216 ! nasal meatus + +[Term] +id: UBERON:0015221 +name: common nasal meatus +xref: FMA:53141 +is_a: UBERON:0015216 ! nasal meatus + +[Term] +id: UBERON:0015222 +name: ventral nasal meatus +def: "The ventral nasal meatus is found between the ventral nasal concha and the dorsal surface of the hard palate.It connects the nasal vestibule with the nasopharynx. Rostrally it is narrow at the nasal vestibule and widens caudally towards the nasopharyngeal meatus. The ventral nasal meatus is the main passage for air. Apart from olfaction, the nasal cavity functions to warm the inhaled air as it passes through the meatuses over the vascular beds of the mucosa. The air is humidified by the vaporization of tears and serous nasal secretion. The air is cleaned throughout the scattered mucous glands. These glands secrete mucous through the nasal cavity and the mucous serves to trap the large particles that come into contact with it. PPP Clinically in the horse the ventral nasal meatus is the main passage through which a stomach tube can be passed to the pharynx and oesophagus and then to the stomach. This kind of a tube is commonly used when drenching a horse for colic, as well as having many other veterinary applications. The tube has to pass through the ventral nasal meatus to the nasopharyngeal meatus and the caudal nares to reach the pharynx and oesophagus. If the tube is accidentally passed into the dorsal or middle nasal meatuses it would pass to the ethmotubinates and cause massive haemorrhage." [MURDOCH:2178] +is_a: UBERON:0015216 ! nasal meatus + +[Term] +id: UBERON:0015223 +name: dorsal nasal meatus +def: "The dosal nasal meatus is a narrow passage bounded dorsally by the roof of the nasal cavity and ventrally by the dorsal concha. It terminates caudally at the junction of the inner plate of the frontal bone with the cribiform plate and lateral mass of the ethmoid bone. It is the shortest and shallowest of the three meatuses." [MURDOCH:659] +is_a: UBERON:0015216 ! nasal meatus + +[Term] +id: UBERON:0015224 +name: interventricular foramen intermedium +def: "A anatomical conduit that is part of a ventricular septum intermedium." [OBOL:automatic] +synonym: "interventricular ostium intermedium" EXACT LATIN [] +is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0004111 ! anatomical conduit +intersection_of: part_of UBERON:0004153 ! ventricular septum intermedium +relationship: part_of UBERON:0004153 ! ventricular septum intermedium + +[Term] +id: UBERON:0015225 +name: atrial foramen intermedium +def: "A anatomical conduit that is part of a atrial septum intermedium." [OBOL:automatic] +synonym: "interatrial ostium intermedium" EXACT LATIN [] +synonym: "ostium intermedium" RELATED [] +is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0004111 ! anatomical conduit +intersection_of: part_of UBERON:0004159 ! atrial septum intermedium +relationship: part_of UBERON:0004159 ! atrial septum intermedium + +[Term] +id: UBERON:0015226 +name: bulbar spiral septum +xref: http://www.snomedbrowser.com/Codes/Details/361469006 +is_a: UBERON:0002099 ! cardiac septum + +[Term] +id: UBERON:0015227 +name: peristaltic circulatory vessel +def: "A vessel down which passes a wave of muscular contraction, that forces the flow of haemolymphatic fluid." [http://orcid.org/0000-0002-6601-2165] +synonym: "peristaltic heart" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: ANISEED:1235302 +xref: BSA:0000063 +xref: BSA:0000088 +is_a: UBERON:0000025 ! tube +is_a: UBERON:0000055 ! vessel +is_a: UBERON:0007100 ! primary circulatory organ +relationship: present_in_taxon NCBITaxon:7718 {source="http://www.ncbi.nlm.nih.gov/pubmed/20959416"} + +[Term] +id: UBERON:0015228 +name: circulatory organ +def: "A hollow, muscular organ, which, by contracting rhythmically, contributes to the circulation of lymph, blood or analogs. Examples: a chambered vertebrate heart; the tubular peristaltic heart of ascidians; the dorsal vessel of an insect; the lymoh heart of a reptile." [http://orcid.org/0000-0002-6601-2165] +subset: grouping_class +synonym: "cardiac pump" EXACT [] +synonym: "cardiac structure" RELATED [] +synonym: "circulatory vessel" NARROW [] +synonym: "heart" BROAD [] +synonym: "heart or heart like organ" EXACT [] +xref: SPD:0000130 +is_a: UBERON:0003103 ! compound organ +relationship: part_of UBERON:0001009 ! circulatory system + +[Term] +id: UBERON:0015229 +name: accessory circulatory organ +def: "A circulatory organ that is not responsible for primary circulation." [UBERON:cjm] +is_a: UBERON:0015228 ! circulatory organ + +[Term] +id: UBERON:0015230 +name: dorsal vessel heart +synonym: "heart" RELATED SENSU [] +xref: FBbt:00003154 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0007100 ! primary circulatory organ +relationship: part_of UBERON:0015231 {source="FBbt"} ! circulatory system dorsal vessel + +[Term] +id: UBERON:0015231 +name: circulatory system dorsal vessel +synonym: "adult dorsal vessel" RELATED [FBbt:00003152] +synonym: "dorsal vessel" EXACT [] +xref: FBbt:00003152 +is_a: UBERON:0000055 ! vessel +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0001009 ! circulatory system + +[Term] +id: UBERON:0015232 +name: nematode pharynx +def: "The feeding organ, a neuro-muscular pump in the head of the animal, used to ingest food, bacteria suspended in liquid, filter them out, grind them up and transport posteriorly into the instestine." [WBbt:0003681] +synonym: "esophagus" RELATED [WBbt:0003681] +xref: WBbt:0003681 +is_a: UBERON:0001041 ! foregut + +[Term] +id: UBERON:0015233 +name: nucleus of dorsal thalamus +def: "A nucleus of brain that is part of a dorsal thalamus." [OBOL:automatic] +synonym: "dorsal thalamic nucleus" EXACT [] +synonym: "nucleus of thalamus proper" EXACT [] +is_a: UBERON:0007692 ! nucleus of thalamus +intersection_of: UBERON:0002308 ! nucleus of brain +intersection_of: part_of UBERON:0004703 ! dorsal thalamus +relationship: part_of UBERON:0004703 ! dorsal thalamus +relationship: present_in_taxon NCBITaxon:7762 {notes="Hagfish possess a habenular complex and separate nuclei in the dorsal thalamus", source="Butler, 1996, p. 303"} + +[Term] +id: UBERON:0015234 +name: nucleus of ventral thalamus +def: "A nucleus of brain that is part of a ventral thalamus." [OBOL:automatic] +synonym: "ventral thalamic nucleus" EXACT [] +is_a: UBERON:0007692 ! nucleus of thalamus +intersection_of: UBERON:0002308 ! nucleus of brain +intersection_of: part_of UBERON:0001900 ! ventral thalamus +relationship: part_of UBERON:0001900 ! ventral thalamus + +[Term] +id: UBERON:0015238 +name: pineal complex +def: "A cluster in the epithalamus that consists of the pineal body and any associated structures, such as the parapineal gland or the parietal organ. The complex is poorly developed in mammals." [http://orcid.org/0000-0002-6601-2165] +xref: TAO:0001359 +xref: ZFA:0001359 +is_a: UBERON:0000477 ! anatomical cluster +relationship: dubious_for_taxon NCBITaxon:40674 +relationship: part_of UBERON:0001899 {source="ZFA"} ! epithalamus + +[Term] +id: UBERON:0015241 +name: parapineal organ +synonym: "parapineal gland" RELATED [] +xref: TAO:0001360 +xref: ZFA:0001360 +is_a: UBERON:0003103 {source="ZFA"} ! compound organ +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0015238 {source="ZFA"} ! pineal complex + +[Term] +id: UBERON:0015243 +name: lower part of vagina +def: "The lower third of the vagina." [http://orcid.org/0000-0002-6601-2165] +synonym: "caudal vagina" EXACT [] +synonym: "lower third of vagina" RELATED [] +synonym: "lower vagina" RELATED [] +synonym: "perineal part of vagina" EXACT [FMA:27975] +synonym: "sinus vagina" RELATED [EMAPA:18999] +synonym: "vagina lower part" EXACT [MA:0003243] +synonym: "vaginal bulb" RELATED [EMAPA:18999] +xref: EMAPA:18999 +xref: FMA:27975 +xref: http://www.snomedbrowser.com/Codes/Details/362252008 +xref: MA:0003243 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0013515 {source="cjm"} ! subdivision of oviduct +relationship: part_of UBERON:0000996 {source="EMAPA"} ! vagina + +[Term] +id: UBERON:0015244 +name: accessory olfactory bulb granule cell layer +synonym: "accessory olfactory bulb, granular layer" EXACT [ABA:AOBgr] +synonym: "AOB, granular layer" EXACT [DMBA:AGr] +xref: DMBA:15961 +xref: EMAPA:35109 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2717 +xref: MA:0002933 +xref: MBA:196 +is_a: UBERON:0004001 ! olfactory bulb layer +relationship: part_of UBERON:0004069 {source="MA"} ! accessory olfactory bulb +relationship: part_of UBERON:0005378 ! olfactory bulb granule cell layer + +[Term] +id: UBERON:0015245 +name: septal olfactory organ +def: "A spatially segregated cluster of sensory cells in the nasal cavity." [http://www.ncbi.nlm.nih.gov/books/NBK55971/] +xref: EMAPA:35764 +xref: MA:0001327 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010001 ! cell cluster organ +relationship: adjacent_to UBERON:0001706 {modified_from="MA"} ! nasal septum +relationship: located_in UBERON:0001997 ! olfactory epithelium +relationship: part_of UBERON:0000004 ! nose +relationship: part_of UBERON:0005726 {source="NCBIBook:NBK55971"} ! chemosensory system + +[Term] +id: UBERON:0015246 +name: septal organ of Masera +def: "A small island of olfactory neuroepithelium lying bilaterally at the ventral base of the nasal septum near the entrance of the nasopharynx." [NCBIBook:NBK55971] +synonym: "SO of Masera" RELATED [NCBIBook:NBK55971] +xref: EMAPA:35766 +xref: MA:0002890 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0015245 {source="MA"} ! septal olfactory organ +relationship: has_part UBERON:0002232 ! olfactory gland +relationship: part_of UBERON:0001997 ! olfactory epithelium + +[Term] +id: UBERON:0015247 +name: bifurcation of trachea +def: "This is the point at which the trachea splits into two (left and right) principal bronchi. It is located in the region of the fourth to sixth intercostal space, though this varies with species and with respiratory phase. This position closely associates the bifurcation with the heart base. The thickened median crest initiating the bifurcation is called the tracheal carina ." [MURDOCH:1966] +synonym: "bifurcatio tracheae" EXACT LATIN [FMA:TA] +synonym: "tracheal bifurcation" EXACT [FMA:7464] +xref: EMAPA:37555 {source="MA:th"} +xref: FMA:7464 +xref: http://www.snomedbrowser.com/Codes/Details/361954003 +xref: MA:0003114 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: connects UBERON:0002182 ! main bronchus +relationship: connects UBERON:0003126 ! trachea +relationship: part_of UBERON:0003126 {source="MA"} ! trachea + +[Term] +id: UBERON:0015249 +name: digit skin +def: "A zone of skin that is part of a digit [Automatically generated definition]." [OBOL:automatic] +subset: pheno_slim +xref: EMAPA:32615 +xref: MA:0003011 +is_a: UBERON:0015790 ! autopod skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0002544 ! digit +relationship: part_of UBERON:0002544 ! digit + +[Term] +id: UBERON:0015250 +name: inferior olivary commissure +synonym: "interolivary commissure" RELATED [MA:0003019] +xref: EMAPA:37610 {source="MA:th"} +xref: MA:0003019 +is_a: UBERON:0034763 ! hindbrain commissure +relationship: part_of UBERON:0001896 {source="MA"} ! medulla oblongata +relationship: part_of UBERON:0014891 {source="MA-modified"} ! brainstem white matter + +[Term] +id: UBERON:0015251 +name: modified sebaceous gland +xref: EMAPA:37680 {source="MA:th"} +xref: MA:0003043 +is_a: UBERON:0001821 {source="MA"} ! sebaceous gland + +[Term] +id: UBERON:0015252 +name: coat hair follicle +def: "A hair follicle that is part of a coat of hair." [OBOL:automatic] +xref: EMAPA:35246 +xref: MA:0000160 +is_a: UBERON:0002073 ! hair follicle +intersection_of: UBERON:0002073 ! hair follicle +intersection_of: part_of UBERON:0010166 ! coat of hair +relationship: part_of UBERON:0010166 ! coat of hair + +[Term] +id: UBERON:0015280 +name: pancreas left lobe +def: "A pancreatic lobule that is in_the_left_side_of a exocrine pancreas." [OBOL:automatic] +xref: EMAPA:37711 {source="MA:th"} +xref: MA:0000722 +is_a: UBERON:0007324 ! pancreatic lobule +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0007324 ! pancreatic lobule +intersection_of: in_left_side_of UBERON:0000017 ! exocrine pancreas +relationship: in_left_side_of UBERON:0000017 ! exocrine pancreas + +[Term] +id: UBERON:0015281 +name: pancreas right lobe +def: "A pancreatic lobule that is in_the_right_side_of a exocrine pancreas." [OBOL:automatic] +xref: EMAPA:37712 {source="MA:th"} +xref: MA:0000723 +is_a: UBERON:0007324 ! pancreatic lobule +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0007324 ! pancreatic lobule +intersection_of: in_right_side_of UBERON:0000017 ! exocrine pancreas +relationship: in_right_side_of UBERON:0000017 ! exocrine pancreas + +[Term] +id: UBERON:0015329 +name: respiratory system basement membrane +def: "A basement membrane of epithelium that is part of a respiratory system." [OBOL:automatic] +xref: EMAPA:37570 {source="MA:th"} +xref: MA:0001815 +is_a: UBERON:0005769 ! basement membrane of epithelium +intersection_of: UBERON:0005769 ! basement membrane of epithelium +intersection_of: part_of UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0003570 {source="MA"} ! respiratory system connective tissue + +[Term] +id: UBERON:0015350 +name: saphenous artery +def: "A branch of the descending genicular artery, the last branch (most distal) of the femoral, the saphenous is also variable. It usually lies between the sartorius and the garcilis muscles and supplies their distal ends. The artery accompanies the saphenous nerve. It usually supplies the skin on the medial and proximal part of the leg. The artery may continue to join, in varying degrees, the dorsalis pedis artery and plantaris pedis arteries." [http://www.anatomyatlases.org/AnatomicVariants/Cardiovascular/Text/Arteries/Saphenous.shtml] +synonym: "ramus saphenus (arteria descendentis genus)" EXACT LATIN [FMA:22510, FMA:TA] +xref: EMAPA:37220 {source="MA:th"} +xref: FMA:22510 +xref: http://en.wikipedia.org/wiki/Saphenous_branch_of_descending_genicular_artery +xref: MA:0002039 +is_a: UBERON:0001637 {source="MA"} ! artery + +[Term] +id: UBERON:0015410 +name: heart plus pericardium +synonym: "heart/pericardium" EXACT [MA:0002449] +xref: EMAPA:37597 {source="MA:th"} +xref: MA:0002449 +is_a: UBERON:0005178 {source="MA"} ! thoracic cavity element +relationship: part_of UBERON:0004535 ! cardiovascular system + +[Term] +id: UBERON:0015418 +name: urethra mesenchymal layer +def: "A mesenchyme that is part of a urethra." [OBOL:automatic] +xref: EMAPA:37786 {source="MA:th"} +xref: MA:0002648 +is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0000057 ! urethra +relationship: part_of UBERON:0000057 ! urethra + +[Term] +id: UBERON:0015420 +name: ureteral valve +def: "A valve that is part of a ureter." [OBOL:automatic] +synonym: "ureteral valve" EXACT [MA:0002658] +synonym: "valve or ureter" EXACT [] +xref: EMAPA:37781 {source="MA:th"} +xref: MA:0002658 +is_a: UBERON:0003978 ! valve +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0003978 ! valve +intersection_of: part_of UBERON:0000056 ! ureter +relationship: part_of UBERON:0000056 ! ureter + +[Term] +id: UBERON:0015423 +name: hilar portion of hepatic duct +def: "The segment of either hepatic duct located in the hilum of the liver." [ncithesaurus:Hilar_Portion_of_the_Hepatic_Duct] +synonym: "hilar part of hepatic duct" EXACT [MA:0002665] +xref: EMAPA:37599 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1711262 +xref: MA:0002665 +xref: NCIT:C43630 +is_a: UBERON:0005171 {source="ncithesaurus"} ! hepatic duct +relationship: located_in UBERON:0002107 {notes="located in or on the hilum, but not part of the liver"} ! liver +relationship: part_of UBERON:0005604 {source="MA"} ! extrahepatic part of hepatic duct + +[Term] +id: UBERON:0015430 +name: levator auris longus muscle +def: "Muscle organ located on the dorsal surface of the head innervated by the facial nerve" [http://neurolex.org/wiki/Category\:Levator_auris_longus_muscle] +synonym: "LAL" RELATED ABBREVIATION [http://neurolex.org/wiki/Category\:Levator_auris_longus_muscle] +synonym: "levator auris longus" EXACT [MA:0002758] +xref: EMAPA:36627 +xref: MA:0002758 +is_a: UBERON:0001630 {source="MA"} ! muscle organ +relationship: innervated_by UBERON:0001647 ! facial nerve +relationship: part_of UBERON:0001691 ! external ear + +[Term] +id: UBERON:0015432 +name: accessory olfactory bulb mitral cell layer +synonym: "accessory olfactory bulb, mitral layer" EXACT [ABA:AOBmi] +xref: EMAPA:35111 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2716 +xref: MA:0002766 +xref: MBA:204 +xref: NLXANAT:1005002 +is_a: UBERON:0004001 ! olfactory bulb layer +relationship: part_of UBERON:0004069 {source="MA"} ! accessory olfactory bulb +relationship: part_of UBERON:0004186 ! olfactory bulb mitral cell layer + +[Term] +id: UBERON:0015433 +name: blood vessel external elastic membrane +def: "A thin layer of fibrous tissue capable of stretching and contracting. It is part of the tunica media of the blood vessels." [ncithesaurus:External_Elastic_Membrane] +synonym: "external elastic lamina" EXACT [FMA:68206] +synonym: "external elastic membrane" EXACT [MA:0002862] +synonym: "outer elastic lamina" RELATED [FMA:68206] +xref: EMAPA:36302 +xref: FMA:68206 +xref: MA:0002862 +xref: NCIT:C32555 +is_a: UBERON:0003614 {source="MA"} ! blood vessel elastic tissue +relationship: part_of UBERON:0002522 {source="MA"} ! tunica media + +[Term] +id: UBERON:0015445 +name: anterior lingual gland duct +def: "A duct that is part of a anterior lingual gland." [OBOL:automatic] +xref: EMAPA:37641 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/362180000 +xref: MA:0002938 +is_a: UBERON:0001837 ! duct of salivary gland +intersection_of: UBERON:0000058 ! duct +intersection_of: part_of UBERON:0006330 ! anterior lingual gland +relationship: part_of UBERON:0006330 ! anterior lingual gland + +[Term] +id: UBERON:0015453 +name: subcutaneous lymph node +def: "A lymph node that is part of a hypodermis." [OBOL:automatic] +xref: MA:0003028 +is_a: UBERON:0000029 ! lymph node +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0000029 ! lymph node +intersection_of: part_of UBERON:0002072 ! hypodermis +relationship: part_of UBERON:0002072 ! hypodermis + +[Term] +id: UBERON:0015454 +name: pancreatic fat pad +def: "A fat pad that is part of a pancreas." [OBOL:automatic] +xref: MA:0003029 +is_a: UBERON:0003586 ! trunk connective tissue +is_a: UBERON:0003916 ! fat pad +intersection_of: UBERON:0003916 ! fat pad +intersection_of: part_of UBERON:0001264 ! pancreas +relationship: part_of UBERON:0001264 ! pancreas + +[Term] +id: UBERON:0015455 +name: accessory hepatic vein +xref: EMAPA:37065 {source="MA:th"} +xref: MA:0003035 +is_a: UBERON:0001143 {source="MA"} ! hepatic vein + +[Term] +id: UBERON:0015458 +name: mediastinal fat pad +def: "A fat pad that is part of a mediastinum." [OBOL:automatic] +xref: MA:0003063 +is_a: UBERON:0003593 ! thoracic cavity connective tissue +is_a: UBERON:0003916 ! fat pad +intersection_of: UBERON:0003916 ! fat pad +intersection_of: located_in UBERON:0003728 ! mediastinum +relationship: located_in UBERON:0003728 ! mediastinum + +[Term] +id: UBERON:0015469 +name: splenic lymph node +def: "The splenic lymph nodes (or pancreaticolienal) accompany the lienal (splenic) artery, and are situated in relation to the posterior surface and upper border of the pancreas; one or two members of this group are found in the gastrolienal ligament. Their afferents are derived from the stomach, spleen, and pancreas, their efferents join the celiac group of preaortic glands." [http://en.wikipedia.org/wiki/Splenic_lymph_nodes] +synonym: "jPS 10 node" RELATED [FMA:66187] +synonym: "jPS no. 10 node" RELATED [FMA:66187] +synonym: "lymph node of splenic hilum" RELATED [FMA:66187] +synonym: "no. 10 pancreaticosplenic lymph node" RELATED [FMA:66187] +synonym: "pancreaticolienal lymph node" RELATED [http://en.wikipedia.org/wiki/Splenic_lymph_nodes] +synonym: "splenic glands" RELATED [http://en.wikipedia.org/wiki/Splenic_lymph_nodes] +xref: FMA:66187 +xref: http://en.wikipedia.org/wiki/Splenic_lymph_nodes +xref: http://www.snomedbrowser.com/Codes/Details/80088008 +xref: MA:0003074 +is_a: UBERON:0000029 {source="MA"} ! lymph node + +[Term] +id: UBERON:0015472 +name: tracheobronchial lymph node +alt_id: UBERON:0016381 +def: "A lymph node located near the bifurcation of the trachea." [ncithesaurus:Tracheobronchial_Lymph_Node] +synonym: "bronchial lymph node" NARROW [MA:0003078] +synonym: "lymph node, tracheobronchial" RELATED [] +synonym: "nodus tracheobronchiale lymphaticus" EXACT [FMA:5950] +synonym: "tracheobronchal lymph node" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/16624319] +synonym: "tracheobronchal node" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/16624319] +synonym: "tracheobronchial node" EXACT [FMA:5950] +xref: FMA:5950 +xref: http://en.wikipedia.org/wiki/Tracheobronchial_lymph_nodes +xref: http://linkedlifedata.com/resource/umls/id/C0229751 +xref: http://www.snomedbrowser.com/Codes/Details/245341003 +xref: MA:0003068 +xref: NCIT:C77651 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0005178 ! thoracic cavity element +is_a: UBERON:0007644 ! thoracic lymph node +relationship: located_in UBERON:0003728 ! mediastinum +relationship: part_of UBERON:0007196 ! tracheobronchial tree + +[Term] +id: UBERON:0015474 +name: axilla skin +def: "A zone of skin that is part of a axilla." [OBOL:automatic] +synonym: "axillary skin" EXACT [FMA:37322] +synonym: "skin of axilla" EXACT [FMA:37322] +xref: EMAPA:37349 {source="MA:th"} +xref: FMA:37322 +xref: MA:0003087 +xref: NCIT:C116164 +is_a: UBERON:0000014 ! zone of skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0009472 ! axilla +relationship: part_of UBERON:0009472 ! axilla + +[Term] +id: UBERON:0015476 +name: nose skin +def: "A zone of skin that is part of a external nose." [OBOL:automatic] +synonym: "external nasal skin" EXACT [FMA:24763] +synonym: "skin of external nose" EXACT [FMA:24763] +synonym: "skin of nose" EXACT [FMA:24763] +xref: EMAPA:37684 {source="MA:th"} +xref: FMA:24763 +xref: MA:0003090 +is_a: UBERON:1000021 ! skin of face +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0007827 ! external nose +relationship: part_of UBERON:0007827 ! external nose + +[Term] +id: UBERON:0015477 +name: axillary fat pad +def: "A fat pad that is part of a axilla." [OBOL:automatic] +xref: MA:0003091 +is_a: UBERON:0003916 ! fat pad +intersection_of: UBERON:0003916 ! fat pad +intersection_of: part_of UBERON:0009472 ! axilla +relationship: part_of UBERON:0009472 ! axilla + +[Term] +id: UBERON:0015479 +name: scrotum skin +def: "A zone of skin that is part of a scrotum." [OBOL:automatic] +subset: pheno_slim +synonym: "scrotal skin" EXACT [] +synonym: "skin of scrotum" EXACT [FMA:20432] +xref: EMAPA:36411 +xref: FMA:20432 +xref: http://www.snomedbrowser.com/Codes/Details/361710000 +xref: MA:0003093 +is_a: UBERON:0000014 ! zone of skin +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0001300 ! scrotum +relationship: part_of UBERON:0001300 ! scrotum + +[Term] +id: UBERON:0015480 +name: proper hepatic artery +def: "The hepatic artery proper (also proper hepatic artery), arises from the common hepatic artery and runs alongside the portal vein and the common bile duct to form the portal triad. The hepatic artery proper gives off a small supraduodenal artery to the duodenal bulb. Then the right gastric artery comes off and runs to the left along the lesser curvature of the stomach to meet the left gastric artery, which is a branch of the celiac trunk. It subsequently gives off the cystic artery, which feeds the gallbladder, before bifurcating into the right and left hepatic arteries. Of note, the right and left hepatic arteries may demonstrate variant anatomy. A replaced right hepatic artery may arise from the superior mesenteric artery (SMA) and a replaced left hepatic artery may arise from the left gastric artery." [http://en.wikipedia.org/wiki/Hepatic_artery_proper] +synonym: "hepatic artery proper" EXACT [FMA:14772] +synonym: "proper hepatic" RELATED [http://en.wikipedia.org/wiki/Hepatic_artery_proper] +xref: EMAPA:37217 {source="MA:th"} +xref: FMA:14772 +xref: http://en.wikipedia.org/wiki/Hepatic_artery_proper +xref: http://www.snomedbrowser.com/Codes/Details/244262006 +xref: MA:0003095 +is_a: UBERON:0001193 {source="MA"} ! hepatic artery +is_a: UBERON:0004573 ! systemic artery +relationship: branching_part_of UBERON:0005436 {source="FMA"} ! common hepatic artery +relationship: part_of UBERON:0005436 ! common hepatic artery + +[Term] +id: UBERON:0015481 +name: left hepatic artery +def: "A hepatic artery that is part of a left lobe of liver." [OBOL:automatic] +synonym: "left branch of hepatic artery" EXACT [FMA:14779] +synonym: "left part of hepatic artery proper" EXACT [FMA:14779] +synonym: "ramus sinister (arteria hepatica propria)" EXACT LATIN [FMA:14779, FMA:TA] +xref: EMAPA:37096 {source="MA:th"} +xref: FMA:14779 +xref: MA:0003096 +is_a: UBERON:0001193 ! hepatic artery +is_a: UBERON:0015796 ! liver blood vessel +intersection_of: UBERON:0001193 ! hepatic artery +intersection_of: part_of UBERON:0001115 ! left lobe of liver +relationship: part_of UBERON:0001115 {source="FMA"} ! left lobe of liver + +[Term] +id: UBERON:0015482 +name: right hepatic artery +def: "A hepatic artery that is part of a right lobe of liver." [OBOL:automatic] +synonym: "ramus dexter (arteria hepatica propria)" EXACT LATIN [FMA:14778, FMA:TA] +synonym: "right branch of hepatic artery proper" EXACT [FMA:14778] +synonym: "right part of hepatic artery proper" EXACT [FMA:14778] +xref: EMAPA:37376 {source="MA:th"} +xref: FMA:14778 +xref: MA:0003097 +is_a: UBERON:0001193 ! hepatic artery +is_a: UBERON:0015796 ! liver blood vessel +intersection_of: UBERON:0001193 ! hepatic artery +intersection_of: part_of UBERON:0001114 ! right lobe of liver +relationship: part_of UBERON:0001114 {source="FMA"} ! right lobe of liver + +[Term] +id: UBERON:0015484 +name: epidermis of metapodial pad +def: "A zone of skin that is part of a metapodial pad." [OBOL:automatic] +subset: pheno_slim +synonym: "foot pad skin" RELATED [MA:0003105] +xref: EMAPA:37355 {source="MA:th"} +xref: MA:0003105 +is_a: UBERON:0009200 ! limb epidermis +is_a: UBERON:0019204 ! skin epithelium +intersection_of: UBERON:0001003 ! skin epidermis +intersection_of: part_of UBERON:0008838 ! metapodial pad +relationship: part_of UBERON:0008838 ! metapodial pad + +[Term] +id: UBERON:0015485 +name: choledocho-duodenal junction +def: "hat part of the duodenal wall traversed by the ductus choledochus, ductus pancreaticus, and ampulla." [http://medical-dictionary.thefreedictionary.com/choledochoduodenal+junction] +synonym: "choledochoduodenal junction" EXACT [MA:0003108] +xref: EMAPA:37478 {source="MA:th"} +xref: MA:0003108 +is_a: UBERON:1100000 ! digestive tract junction +intersection_of: UBERON:0007651 ! anatomical junction +intersection_of: connects UBERON:0002114 ! duodenum +intersection_of: connects UBERON:0002394 ! bile duct +relationship: connects UBERON:0002114 ! duodenum +relationship: connects UBERON:0002394 ! bile duct + +[Term] +id: UBERON:0015488 +name: sural nerve +def: "The sural nerve (short saphenous nerve), formed by the junction of the medial sural cutaneous with the peroneal anastomotic branch of the lateral sural cutaneous nerve, passes downward near the lateral margin of the tendo calcaneus, lying close to the small saphenous vein, to the interval between the lateral malleolus and the calcaneus. It runs forward below the lateral malleolus, and is continued as the lateral dorsal cutaneous nerve along the lateral side of the foot and little toe (via a dorsal digital nerve), communicating on the dorsum of the foot with the intermediate dorsal cutaneous nerve, a branch of the superficial peroneal. In the leg, its branches communicate with those of the posterior femoral cutaneous." [http://en.wikipedia.org/wiki/Sural_nerve] +synonym: "nerve, sural" RELATED [] +synonym: "short saphenal nerve" RELATED [] +xref: EMAPA:37757 {source="MA:th"} +xref: FMA:44688 +xref: http://www.snomedbrowser.com/Codes/Details/181073006 +xref: MA:0003111 +xref: NCIT:C77675 +xref: Sural:nerve +is_a: UBERON:0003431 ! leg nerve +relationship: branching_part_of UBERON:0001323 {source="FMA"} ! tibial nerve +relationship: part_of UBERON:0001323 ! tibial nerve + +[Term] +id: UBERON:0015510 +name: body of corpus callosum +def: "An area within the corpus callosum, a white matter structure within the cleft that separates the left and right cerebral hemispheres in the mammalian brain, between the genu (anterior region) and the splenium (posterior region)." [ncithesaurus:Body_of_the_Corpus_Callosum] +synonym: "body of corpus callosum" RELATED [NeuroNames:195] +synonym: "body of the corpus callosum" RELATED [NeuroNames:195] +synonym: "corpus callosum body" EXACT [FMA:61947] +synonym: "corpus callosum truncus" RELATED LATIN [NeuroNames:195] +synonym: "corpus callosum, body" RELATED [NeuroNames:195] +synonym: "corpus callosum, corpus" RELATED LATIN [NeuroNames:195] +synonym: "trunculus corporis callosi" RELATED LATIN [NeuroNames:195] +synonym: "truncus corporis callosi" EXACT LATIN [FMA:61947, FMA:TA] +synonym: "truncus corpus callosi" RELATED LATIN [NeuroNames:195] +synonym: "trunk of corpus callosum" RELATED [NeuroNames:195] +xref: DHBA:10564 +xref: FMA:61947 +xref: HBA:9224 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=195 +xref: http://linkedlifedata.com/resource/umls/id/C0152320 +xref: http://www.snomedbrowser.com/Codes/Details/279307005 +xref: NCIT:C32216 +xref: NeuroNamesCNID:177 +is_a: UBERON:0002437 ! cerebral hemisphere white matter +relationship: part_of UBERON:0002336 ! corpus callosum + +[Term] +id: UBERON:0015593 +name: frontal gyrus +def: "A gyrus that is part of a frontal cortex." [OBOL:automatic] +xref: http://linkedlifedata.com/resource/umls/id/C0228195 +xref: NCIT:C32636 +is_a: UBERON:0000200 ! gyrus +intersection_of: UBERON:0000200 ! gyrus +intersection_of: part_of UBERON:0001870 ! frontal cortex +relationship: part_of UBERON:0001870 ! frontal cortex + +[Term] +id: UBERON:0015599 +name: genu of corpus callosum +def: "Part of corpus callosum comprising the \"kneelike\" anterior bend (adapted from Nolte, The Human Brain, 6th ed., 2009 pg 664)" [NLX:144462] +synonym: "corpus callosum genu" EXACT [FMA:61946] +synonym: "corpus callosum, genu" RELATED [NeuroNames:194] +synonym: "corpus callosum, genu" RELATED LATIN [NeuroNames:194] +synonym: "genu" RELATED [NeuroNames:194] +synonym: "genu corporis callosi" RELATED LATIN [NeuroNames:194] +synonym: "genu corpus callosi" RELATED LATIN [NeuroNames:194] +synonym: "genu of corpus callosum" RELATED [NeuroNames:194] +synonym: "genu of the corpus callosum" RELATED [NeuroNames:194] +synonym: "rostrum of corpus callosum (Mai)" RELATED [NeuroNames:194] +xref: DHBA:10563 +xref: FMA:61946 +xref: HBA:9223 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=194 +xref: http://en.wikipedia.org/wiki/Genu_of_the_corpus_callosum +xref: http://linkedlifedata.com/resource/umls/id/C0152321 +xref: http://www.snomedbrowser.com/Codes/Details/279310003 +xref: MBA:1108 +xref: NCIT:C32675 +xref: NeuroNamesCNID:176 +xref: NLX:144462 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: in_anterior_side_of UBERON:0002336 ! corpus callosum +relationship: part_of UBERON:0002336 ! corpus callosum + +[Term] +id: UBERON:0015703 +name: rostrum of corpus callosum +def: "The part of the corpus callosum that projects posteriorly and inferiorly from the anteriormost genu." [http://en.wikipedia.org/wiki/Corpus_callosum] +synonym: "corpus callosum rostrum" RELATED LATIN [NeuroNames:193] +synonym: "corpus callosum, rostrum" RELATED [NeuroNames:193] +synonym: "rostrum" RELATED [NeuroNames:193] +synonym: "rostrum corporis callosi" RELATED LATIN [NeuroNames:193] +synonym: "rostrum corpus callosi" RELATED LATIN [NeuroNames:193] +synonym: "rostrum of corpus callosum" RELATED [NeuroNames:193] +synonym: "rostrum of the corpus callosum" RELATED [http://en.wikipedia.org/wiki/Rostrum_of_corpus_callosum] +synonym: "rostrum of the corpus callosum" RELATED [NeuroNames:193] +xref: DHBA:10562 +xref: FMA:61945 +xref: HBA:9226 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=193 +xref: http://en.wikipedia.org/wiki/Rostrum_of_corpus_callosum +xref: http://linkedlifedata.com/resource/umls/id/C0152322 +xref: http://www.snomedbrowser.com/Codes/Details/279311004 +xref: MBA:979 +xref: NCIT:C33496 +xref: NeuroNamesCNID:175 +is_a: UBERON:0002437 ! cerebral hemisphere white matter +relationship: part_of UBERON:0002336 ! corpus callosum + +[Term] +id: UBERON:0015704 +name: sagittal sinus +def: "Either the inferior or superior sagittal sinus" [http://en.wikipedia.org/wiki/Sagittal_sinus] +xref: http://linkedlifedata.com/resource/umls/id/C0447120 +xref: http://www.snomedbrowser.com/Codes/Details/244400002 +xref: NCIT:C12513 +xref: Sagittal:sinus +is_a: UBERON:0017640 {source="FMA-abduced"} ! unpaired venous dural sinus + +[Term] +id: UBERON:0015708 +name: splenium of the corpus callosum +def: "The posterior end of the corpus callosum. It overlaps the tela chorioidea of the third ventricle and the mid-brain, and ends in a thick, convex, free border." [http://en.wikipedia.org/wiki/Splenium] +synonym: "corpus callosum splenium" EXACT [FMA:61948] +synonym: "corpus callosum splenium" RELATED LATIN [NeuroNames:196] +synonym: "corpus callosum, splenium" EXACT [FMA:61948] +synonym: "corpus callosum, splenium" RELATED LATIN [NeuroNames:196] +synonym: "corpus callosum, splenium (Burdach)" RELATED [NeuroNames:196] +synonym: "splenium" BROAD [NeuroNames:196] +synonym: "splenium corporis callosi" RELATED LATIN [NeuroNames:196] +synonym: "splenium corpus callosi" RELATED LATIN [NeuroNames:196] +synonym: "splenium of corpus callosum" RELATED [NeuroNames:196] +synonym: "splenium of the corpus callosum" RELATED [NeuroNames:196] +xref: DHBA:10565 +xref: FMA:61948 +xref: HBA:9225 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=196 +xref: http://en.wikipedia.org/wiki/Splenium +xref: http://linkedlifedata.com/resource/umls/id/C0152319 +xref: http://www.snomedbrowser.com/Codes/Details/362355007 +xref: MBA:986 +xref: NCIT:C33610 +xref: NeuroNamesCNID:178 +is_a: UBERON:0002437 ! cerebral hemisphere white matter +relationship: in_posterior_side_of UBERON:0002336 ! corpus callosum +relationship: part_of UBERON:0002336 ! corpus callosum + +[Term] +id: UBERON:0015716 +name: anal canal epithelium +def: "A epithelium that is part of a anal canal." [OBOL:automatic] +synonym: "anal canal epithelium" EXACT [FMA:17511] +synonym: "epithelium of anal canal" EXACT [FMA:17511] +xref: EMAPA:18835 +xref: FMA:17511 +is_a: UBERON:0001278 ! epithelium of large intestine +is_a: UBERON:0014703 ! anal membrane ectodermal component +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000159 ! anal canal +relationship: part_of UBERON:0000159 ! anal canal + +[Term] +id: UBERON:0015717 +name: smooth muscle tissue layer of ejaculatory duct +def: "A smooth muscle tissue that is part of a ejaculatory duct." [OBOL:automatic] +synonym: "muscle layer of ejaculatory duct" EXACT [FMA:19372] +xref: EMAPA:32289 +xref: FMA:19372 +is_a: UBERON:0001135 ! smooth muscle tissue +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0000999 ! ejaculatory duct +relationship: part_of UBERON:0000999 ! ejaculatory duct + +[Term] +id: UBERON:0015751 +name: inferior tarsal muscle +def: "A smooth muscle tissue that is part of a inferior eyelid tarsus." [OBOL:automatic] +xref: FMA:49059 +xref: http://www.snomedbrowser.com/Codes/Details/368783000 +is_a: UBERON:0003386 ! smooth muscle of eye +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0004774 ! inferior eyelid tarsus +relationship: part_of UBERON:0004774 ! inferior eyelid tarsus + +[Term] +id: UBERON:0015757 +name: heterogeneous tissue +synonym: "portion of heterogeneous tissue" EXACT [FMA:62798] +xref: FMA:62798 +is_a: UBERON:0000479 {source="FMA"} ! tissue + +[Term] +id: UBERON:0015760 +name: mixed stratified cuboidal and columnar epithelium +def: "Multilaminar epithelium, which consists of more than one layer of cuboidal and columnar cells, only one layer of which is in contact with a basement membrane. Examples: epithelium of wall of pancreatic duct, epithelium of wall of duct of salivary gland." [FMA:63913] +xref: FMA:63913 +is_a: UBERON:0000486 {source="FMA"} ! multilaminar epithelium + +[Term] +id: UBERON:0015764 +name: dense regular elastic tissue +def: "Regular connective tissue, which consists of fibroblasts and of intercellular matrix, which contains elastic fiber bundles oriented predominantly in definable directions." [FMA:64782] +synonym: "dense elastic connective tissue" EXACT [FMA:64782] +synonym: "dense regular elastic connective tissue" EXACT [FMA:64782] +xref: FMA:64782 +is_a: UBERON:0002521 ! elastic tissue +is_a: UBERON:0007845 {source="FMA"} ! regular connective tissue + +[Term] +id: UBERON:0015766 +name: epithelium of duct of salivary gland +def: "A epithelium that is part of a duct of salivary gland." [OBOL:automatic] +synonym: "epithelium of salivary duct" EXACT [FMA:67682] +synonym: "salivary duct epithelium" EXACT [FMA:67682] +synonym: "salivary ductal epithelium" EXACT [FMA:67682] +xref: FMA:67682 +is_a: UBERON:0004809 ! salivary gland epithelium +is_a: UBERON:0010371 {source="FMA"} ! ecto-epithelium +is_a: UBERON:0034969 ! epithelial layer of duct +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001837 ! duct of salivary gland +relationship: part_of UBERON:0001837 ! duct of salivary gland + +[Term] +id: UBERON:0015777 +name: transitional epithelium of prostatic urethra +xref: FMA:74267 +is_a: UBERON:0004787 ! urethra urothelium +is_a: UBERON:0016510 ! epithelium of male urethra +relationship: part_of UBERON:0001335 ! prostatic urethra + +[Term] +id: UBERON:0015783 +name: smooth muscle layer in fatty layer of subcutaneous tissue +def: "A smooth muscle tissue that is part of a hypodermis." [OBOL:automatic] +synonym: "muscle layer in fatty layer of subcutaneous tissue" EXACT [FMA:77862] +synonym: "stratum musculosum panniculi adiposi telae subcutaneae" EXACT LATIN [FMA:77862, FMA:TA] +xref: FMA:77862 +is_a: UBERON:0001135 ! smooth muscle tissue +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0002072 ! hypodermis +relationship: part_of UBERON:0002072 ! hypodermis + +[Term] +id: UBERON:0015784 +name: duct of olfactory gland +def: "A duct that is part of a olfactory gland." [OBOL:automatic] +synonym: "olfactory gland duct" EXACT [] +is_a: UBERON:0000058 ! duct +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000058 ! duct +intersection_of: part_of UBERON:0002232 ! olfactory gland +relationship: located_in UBERON:0005386 ! olfactory segment of nasal mucosa +relationship: part_of UBERON:0002232 ! olfactory gland + +[Term] +id: UBERON:0015785 +name: acinus of olfactory gland +def: "A acinus that is part of a olfactory gland." [OBOL:automatic] +synonym: "acinar part of olfactory gland" EXACT [] +synonym: "olfactory gland acinus" EXACT [] +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0011858 ! acinus of exocrine gland +intersection_of: UBERON:0009842 ! glandular acinus +intersection_of: part_of UBERON:0002232 ! olfactory gland +relationship: located_in UBERON:0000030 ! lamina propria +relationship: part_of UBERON:0002232 ! olfactory gland + +[Term] +id: UBERON:0015786 +name: respiratory segment of nasal mucosa +def: "The portion of the nasal mucosa that is part of the respiratory system." [http://orcid.org/0000-0002-6601-2165] +synonym: "pars respiratoria tunicae mucosae nasi" EXACT LATIN [FMA:77198, FMA:TA] +synonym: "respiratory zone of nasal mucosa" EXACT [FMA:77198] +xref: FMA:77198 +is_a: UBERON:0001826 ! nasal cavity mucosa +intersection_of: UBERON:0001826 ! nasal cavity mucosa +intersection_of: has_part UBERON:0005385 ! nasal cavity respiratory epithelium +intersection_of: part_of UBERON:0001004 ! respiratory system +relationship: has_part UBERON:0005385 ! nasal cavity respiratory epithelium + +[Term] +id: UBERON:0015787 +name: upper respiratory conduit +def: "Any anatomical conduit which is part of the upper respiratory tract" [http://orcid.org/0000-0002-6601-2165] +synonym: "respiratory conduit" RELATED [FMA:265132] +xref: FMA:265132 +is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0004111 ! anatomical conduit +intersection_of: part_of UBERON:0001557 ! upper respiratory tract +relationship: part_of UBERON:0001557 ! upper respiratory tract + +[Term] +id: UBERON:0015788 +name: olfactory apparatus chamber +def: "An anatomical chamber that is part of the olfactory apparatus, consisting of cavity walls (nasal epithelium and mucosal layers) and the space bounded anteriorly by the nares and posteriorly by the choanae, when these structures are present." [http://orcid.org/0000-0002-6601-2165] +xref: FMA:265136 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0015787 ! upper respiratory conduit +relationship: part_of UBERON:0000004 ! nose + +[Term] +id: UBERON:0015789 +name: cranial or facial muscle +subset: grouping_class +synonym: "cranial-facial muscle" RELATED [EMAPA:25133] +synonym: "cranial/facial muscle" EXACT [MA:0000579] +synonym: "cranio-facial muscle" RELATED [EMAPA:25133] +synonym: "craniofacial muscle" RELATED [EMAPA:25133] +xref: EMAPA:25133 +xref: MA:0000579 +is_a: UBERON:0002376 ! cranial muscle +relationship: part_of UBERON:0004473 ! musculature of face + +[Term] +id: UBERON:0015790 +name: autopod skin +def: "A zone of skin that is part of a autopod region." [OBOL:automatic] +synonym: "paw skin" RELATED [MA:0003120] +xref: EMAPA:32723 +xref: MA:0003120 +is_a: UBERON:0001419 ! skin of limb +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0002470 ! autopod region +relationship: part_of UBERON:0002470 ! autopod region + +[Term] +id: UBERON:0015791 +name: digit connective tissue +def: "A portion of connective tissue that is part of a digit." [OBOL:automatic] +xref: EMAPA:37290 {source="MA:th"} +xref: MA:0003123 +is_a: UBERON:0003587 ! limb connective tissue +intersection_of: UBERON:0002384 ! connective tissue +intersection_of: part_of UBERON:0002544 ! digit +relationship: develops_from UBERON:0010702 ! digit mesenchyme +relationship: part_of UBERON:0002544 ! digit +relationship: transformation_of UBERON:0010702 ! digit mesenchyme + +[Term] +id: UBERON:0015792 +name: prostate gland dorsal lobe +xref: EMAPA:29808 +xref: MA:0003124 +is_a: UBERON:0001328 ! lobe of prostate +relationship: part_of UBERON:0008808 ! prostate gland dorsolateral lobe + +[Term] +id: UBERON:0015793 +name: induseum griseum +def: "Thin layer of cortex lying on the dorsal surface of the corpus callosum. It has been debated whether it is more related to the hippocampus or the olfactory bulb (Shipley et al., Olfactory System In Paxinos The Rat Nervous System, 2nd ed)" [NLX:49940] +synonym: "gray stria of Lancisi" RELATED [NeuroNames:173] +synonym: "gyrus epicallosus" RELATED [http://en.wikipedia.org/wiki/Indusium_griseum] +synonym: "gyrus indusium griseum" RELATED [http://en.wikipedia.org/wiki/Indusium_griseum] +synonym: "indusium griseum" EXACT [HBA:265504424] +synonym: "supracallosal gyrus" RELATED [http://en.wikipedia.org/wiki/Indusium_griseum] +xref: DHBA:10304 +xref: DMBA:16147 +xref: EMAPA:35430 +xref: FMA:62488 +xref: HBA:265504424 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=173 +xref: Indusium:griseum +xref: MA:0003129 +xref: MBA:19 +xref: NLX:49940 +is_a: UBERON:0016536 ! white matter of limbic lobe +is_a: UBERON:0016555 ! stria of telencephalon +relationship: part_of UBERON:0002421 {source="MA"} ! hippocampal formation +relationship: part_of UBERON:0002665 {source="FMA"} ! supracallosal gyrus + +[Term] +id: UBERON:0015794 +name: left lung lobar bronchus epithelium +def: "A epithelium that is part of a lobar bronchus of left lung." [OBOL:automatic] +xref: EMAPA:17658 +xref: MA:0003135 +is_a: UBERON:0002339 ! epithelium of lobar bronchus +is_a: UBERON:0003365 ! epithelium of left lung +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0003405 ! lobar bronchus of left lung +relationship: part_of UBERON:0003405 ! lobar bronchus of left lung + +[Term] +id: UBERON:0015795 +name: right lung lobar bronchus epitheium +def: "A epithelium that is part of a lobar bronchus of right lung." [OBOL:automatic] +xref: EMAPA:17666 +xref: MA:0003136 +is_a: UBERON:0002339 ! epithelium of lobar bronchus +is_a: UBERON:0003364 ! epithelium of right lung +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0003404 ! lobar bronchus of right lung +relationship: part_of UBERON:0003404 ! lobar bronchus of right lung + +[Term] +id: UBERON:0015796 +name: liver blood vessel +def: "A blood vessel that is part of a liver." [OBOL:automatic] +synonym: "hepatic blood vessel" RELATED [EMAPA:35498] +xref: EMAPA:35498 +xref: MA:0003137 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0003497 ! abdomen blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0002107 ! liver +relationship: part_of UBERON:0002107 ! liver + +[Term] +id: UBERON:0015800 +name: taenia tectum of brain +def: "A continuation ventrally of the supracallosal gyrus beyond the rostrum of the corpus callosum. It is demonstrated histologically by Nissl stain. In the human ( Anthoney-1994 ) and the macaque ( Paxinos-2004 ) it lies on the rostral surface of the lamina terminalis and is considered identical to or part of the paraterminal gyrus. In the rat ( Swanson-1998 ) and the mouse ( Paxinos-2001 ) it is located similarly in relation to the supracallosal gyrus, however, it is a more prominent layered structure that extends rostrally on the medial surface overlying the anterior olfactory nucleus. It is considered part of the olfactory areas (rodent) of the cerebral cortex. In rodents it consists of two parts, the dorsal tenia tecta and the ventral tenia tecta. Note that some authors use the term 'tenia tecta' or 'taenia tecta' as a synonym for the lateral longitudinal stria ( Riley-1943 )." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1870] +synonym: "taenia tecta" EXACT [MA:0003150] +synonym: "taenia tecta" RELATED LATIN [NeuroNames:1870] +synonym: "taenia tectum" EXACT [DHBA:10305] +synonym: "tenia tecta" RELATED [NeuroNames:1870] +synonym: "tenia tectum" RELATED [NeuroNames:1870] +xref: BTO:0003738 +xref: DHBA:10305 +xref: DMBA:16154 +xref: EMAPA:35847 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1870 +xref: MA:0003150 +xref: MBA:589 +xref: NLX:144479 +is_a: UBERON:0016536 ! white matter of limbic lobe +is_a: UBERON:0016555 ! stria of telencephalon +relationship: part_of UBERON:0002264 ! olfactory bulb +relationship: part_of UBERON:0002665 ! supracallosal gyrus + +[Term] +id: UBERON:0015807 +name: ear epithelium +def: "A epithelium that is part of a ear." [OBOL:automatic] +xref: EMAPA:32800 +xref: MA:0003161 +is_a: UBERON:0019304 ! sensory organ epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001690 ! ear +relationship: part_of UBERON:0001690 ! ear + +[Term] +id: UBERON:0015808 +name: eye epithelium +def: "A epithelium that is part of a camera-type eye." [OBOL:automatic] +xref: EMAPA:35957 +xref: MA:0003162 +is_a: UBERON:0007625 ! pigment epithelium of eye +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000019 ! camera-type eye +relationship: part_of UBERON:0000019 ! camera-type eye + +[Term] +id: UBERON:0015813 +name: middle ear epithelium +def: "A epithelium that is part of a middle ear." [OBOL:automatic] +xref: EMAPA:35673 +xref: MA:0003169 +is_a: UBERON:0015807 ! ear epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001756 ! middle ear +relationship: part_of UBERON:0001756 ! middle ear + +[Term] +id: UBERON:0015814 +name: outer ear epithelium +def: "A epithelium that is part of a external ear." [OBOL:automatic] +xref: EMAPA:35956 +xref: MA:0003170 +is_a: UBERON:0015807 ! ear epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001691 ! external ear +relationship: part_of UBERON:0001691 ! external ear + +[Term] +id: UBERON:0015827 +name: obsolete brainstem reticular formation +is_obsolete: true +replaced_by: UBERON:0002275 + +[Term] +id: UBERON:0015828 +name: cerebellum ventricular layer +xref: EHDAA2:0001153 +xref: EMAPA:17790 +xref: MA:0003187 +is_a: UBERON:0004130 {source="MA"} ! cerebellar layer +relationship: part_of UBERON:0005281 ! ventricular system of central nervous system + +[Term] +id: UBERON:0015829 +name: forebrain ventricular layer +xref: EMAPA:32921 +xref: MA:0003190 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +relationship: part_of UBERON:0001890 ! forebrain +relationship: part_of UBERON:0005281 ! ventricular system of central nervous system + +[Term] +id: UBERON:0015833 +name: foregut epithelium +def: "A epithelium that is part of a foregut." [OBOL:automatic] +xref: EMAPA:32922 +xref: MA:0003204 +is_a: UBERON:0003929 ! digestive tract epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001041 ! foregut +relationship: part_of UBERON:0001041 ! foregut + +[Term] +id: UBERON:0015834 +name: duodenum lamina propria +def: "A lamina propria that is part of a duodenum." [OBOL:automatic] +synonym: "duodenal lamina propria" EXACT [FMA:15972] +synonym: "lamina propria mucosae of duodenum" EXACT [FMA:15972] +synonym: "lamina propria of duodenum" EXACT [FMA:15972] +xref: EMAPA:27255 +xref: FMA:15972 +xref: MA:0003209 +is_a: UBERON:0001238 ! lamina propria of small intestine +intersection_of: UBERON:0000030 ! lamina propria +intersection_of: part_of UBERON:0002114 ! duodenum +relationship: part_of UBERON:0008342 {source="FMA"} ! intestinal villus of duodenum + +[Term] +id: UBERON:0015837 +name: incisor dental pulp +def: "A dental pulp that is part of a incisor tooth." [OBOL:automatic] +xref: EMAPA:35429 +xref: FMA:294459 +xref: MA:0003221 +is_a: UBERON:0001754 ! dental pulp +intersection_of: UBERON:0001754 ! dental pulp +intersection_of: part_of UBERON:0001098 ! incisor tooth +relationship: part_of UBERON:0001098 ! incisor tooth + +[Term] +id: UBERON:0015838 +name: molar dental pulp +xref: EMAPA:35576 +xref: FMA:294469 +xref: MA:0003222 +is_a: UBERON:0001754 ! dental pulp +intersection_of: UBERON:0001754 ! dental pulp +intersection_of: part_of UBERON:0003655 ! molar tooth +relationship: part_of UBERON:0003655 ! molar tooth + +[Term] +id: UBERON:0015839 +name: molar epithelium +synonym: "epithelium of molar" EXACT [] +synonym: "epithelium of molar tooth" EXACT [] +xref: EMAPA:32878 +xref: MA:0003224 +is_a: UBERON:0003843 ! dental epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0003655 ! molar tooth +relationship: part_of UBERON:0003655 ! molar tooth + +[Term] +id: UBERON:0015840 +name: incisor dental lamina +def: "A dental lamina that is part of a incisor tooth." [OBOL:automatic] +xref: EMAPA:32896 +xref: MA:0003225 +is_a: UBERON:0003355 ! epithelium of incisor +is_a: UBERON:0004825 ! dental lamina +intersection_of: UBERON:0004825 ! dental lamina +intersection_of: part_of UBERON:0001098 ! incisor tooth + +[Term] +id: UBERON:0015841 +name: molar dental lamina +xref: EMAPA:32879 +xref: MA:0003226 +is_a: UBERON:0004825 ! dental lamina +is_a: UBERON:0015839 ! molar epithelium +intersection_of: UBERON:0004825 ! dental lamina +intersection_of: part_of UBERON:0003655 ! molar tooth + +[Term] +id: UBERON:0015842 +name: incisor enamel organ +def: "A tooth enamel organ that is part of a incisor tooth." [OBOL:automatic] +xref: EMAPA:32895 +xref: MA:0003227 +is_a: UBERON:0005176 ! tooth enamel organ +intersection_of: UBERON:0005176 ! tooth enamel organ +intersection_of: part_of UBERON:0001098 ! incisor tooth +relationship: part_of UBERON:0003355 ! epithelium of incisor + +[Term] +id: UBERON:0015843 +name: molar enamel organ +xref: EMAPA:32880 +xref: MA:0003228 +is_a: UBERON:0005176 ! tooth enamel organ +intersection_of: UBERON:0005176 ! tooth enamel organ +intersection_of: part_of UBERON:0003655 ! molar tooth +relationship: part_of UBERON:0015839 ! molar epithelium + +[Term] +id: UBERON:0015844 +name: molar dental papilla +synonym: "molar odontogenic papilla" EXACT [OBOL:automatic] +synonym: "molar tooth odontogenic papilla" EXACT [OBOL:automatic] +xref: EMAPA:32882 +xref: MA:0003232 +is_a: UBERON:0001763 ! odontogenic papilla +intersection_of: UBERON:0001763 ! odontogenic papilla +intersection_of: part_of UBERON:0003655 ! molar tooth +relationship: develops_from UBERON:0011641 ! odontogenic mesenchyme of molar +relationship: part_of UBERON:0003655 ! molar tooth + +[Term] +id: UBERON:0015846 +name: incisor mesenchyme +def: "A odontogenic mesenchyme that is part of a incisor tooth." [OBOL:automatic] +xref: EMAPA:32894 +xref: MA:0003229 +is_a: UBERON:0003856 ! uncondensed odontogenic mesenchyme +intersection_of: UBERON:0003856 ! uncondensed odontogenic mesenchyme +intersection_of: part_of UBERON:0001098 ! incisor tooth +relationship: part_of UBERON:0001098 ! incisor tooth + +[Term] +id: UBERON:0015847 +name: upper left incisor tooth +def: "A upper jaw incisor that is in_the_left_side_of a dentition." [OBOL:automatic] +xref: http://www.snomedbrowser.com/Codes/Details/245585000 +is_a: UBERON:0003450 ! upper jaw incisor +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0003450 ! upper jaw incisor +intersection_of: in_left_side_of UBERON:0003672 ! dentition +relationship: in_left_side_of UBERON:0003672 ! dentition + +[Term] +id: UBERON:0015848 +name: incisor tusk +def: "An incisor tooth that protrudes beyond the mouth." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0001098 ! incisor tooth +is_a: UBERON:0010879 ! tusk +relationship: present_in_taxon NCBITaxon:9780 + +[Term] +id: UBERON:0015849 +name: canine tusk +def: "An cuspid tooth that protrudes beyond the mouth." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0003674 ! cuspid +is_a: UBERON:0010879 ! tusk +relationship: present_in_taxon NCBITaxon:41426 +relationship: present_in_taxon NCBITaxon:9705 +relationship: present_in_taxon NCBITaxon:9823 + +[Term] +id: UBERON:0015850 +name: upper left incisor tusk +is_a: UBERON:0015847 ! upper left incisor tooth +is_a: UBERON:0015848 ! incisor tusk + +[Term] +id: UBERON:0015851 +name: upper right incisor tusk +is_a: UBERON:0003450 ! upper jaw incisor +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:0015848 ! incisor tusk +relationship: in_right_side_of UBERON:0003672 ! dentition + +[Term] +id: UBERON:0015852 +name: narwhal tusk +def: "A upper jaw incisor that protrudes prominently from the mouth as a single median tusk, found in narwhals." [http://orcid.org/0000-0002-6601-2165] +comment: Typically the left incisor with the right vestigial, but some males have two tusks +synonym: "median incisor tusk" EXACT [] +is_a: UBERON:0003450 ! upper jaw incisor +is_a: UBERON:0015848 ! incisor tusk +relationship: intersects_midsagittal_plane_of UBERON:0003672 ! dentition + +[Term] +id: UBERON:0015853 +name: dental pulp of median incisor tusk +def: "A dental pulp that is part of a narwhal tusk." [OBOL:automatic] +is_a: UBERON:0003566 ! head connective tissue +is_a: UBERON:0015837 ! incisor dental pulp +intersection_of: UBERON:0001754 ! dental pulp +intersection_of: part_of UBERON:0015852 ! narwhal tusk +relationship: part_of UBERON:0015852 ! narwhal tusk + +[Term] +id: UBERON:0015854 +name: interpedicular line +def: "An anatomical line that connects two successive vertebral pedicles. The length of this line is known as the interpedicular distance." [http://orcid.org/0000-0002-6601-2165] +synonym: "inter-vertebral-pedicle line" EXACT [] +synonym: "interpedicular distance" RELATED [HP:0008450] +is_a: UBERON:0006800 ! anatomical line +intersection_of: UBERON:0006800 ! anatomical line +intersection_of: connects UBERON:0001078 {minCardinality="2", maxCardinality="2"} ! pedicle of vertebra +relationship: connects UBERON:0001078 ! pedicle of vertebra +relationship: part_of UBERON:0001130 ! vertebral column + +[Term] +id: UBERON:0015855 +name: ventral ectodermal ridge +def: "A thickening of the surface ectoderm on the ventral side of the embryonic tail which resembles the apical ectodermal ridge of the limb bud." [http://www.ncbi.nlm.nih.gov/pubmed/7486014] +synonym: "VER" RELATED ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/7486014] +xref: EMAPA:36491 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0000076 ! external ectoderm +relationship: part_of UBERON:0002533 ! post-anal tail bud + +[Term] +id: UBERON:0015857 +name: parotid lymph node +def: "A lymph node found near the parotid gland." [http://en.wikipedia.org/wiki/Parotid_lymph_nodes] +synonym: "parotid node" EXACT [FMA:61216] +xref: FMA:61216 +xref: http://en.wikipedia.org/wiki/Parotid_lymph_nodes +xref: http://www.snomedbrowser.com/Codes/Details/279140007 +xref: MA:0003088 +is_a: UBERON:0015870 ! lymph node of head + +[Term] +id: UBERON:0015859 +name: hepatic lymph node +def: "Any of the lymph nodes adjacent to the stomach and duodenum." [ncithesaurus:Hepatic_Lymph_Node] +synonym: "hepatic node" EXACT [FMA:12798] +synonym: "lymphoglandulae hepaticae" EXACT LATIN [http://en.wikipedia.org/wiki/Hepatic_lymph_nodes] +synonym: "lymphoglandulæ hepaticæ" EXACT LATIN [http://en.wikipedia.org/wiki/Hepatic_lymph_nodes] +synonym: "nodi lymphoidei hepatici" EXACT LATIN [http://en.wikipedia.org/wiki/Hepatic_lymph_nodes] +synonym: "portal lymph node" EXACT [FMA:12798] +xref: FMA:12798 +xref: http://en.wikipedia.org/wiki/Hepatic_lymph_nodes +xref: http://linkedlifedata.com/resource/umls/id/C0229769 +xref: http://www.snomedbrowser.com/Codes/Details/280480005 +xref: MA:0003072 +xref: NCIT:C77640 +is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node + +[Term] +id: UBERON:0015860 +name: visceral abdominal lymph node +xref: FMA:66178 +is_a: UBERON:0002507 {source="FMA"} ! abdominal lymph node + +[Term] +id: UBERON:0015863 +name: gastric lymph node +def: "A lymph node along the left gastric artery or greater omentum." [ncithesaurus:Gastric_Lymph_Node] +synonym: "gastric node" EXACT [FMA:12796] +synonym: "nodi lymphoidei gastrici" EXACT LATIN [http://en.wikipedia.org/wiki/Gastric_lymph_nodes] +xref: FMA:12796 +xref: http://en.wikipedia.org/wiki/Gastric_lymph_nodes +xref: http://linkedlifedata.com/resource/umls/id/C1282334 +xref: MA:0003071 +xref: NCIT:C92222 +is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node + +[Term] +id: UBERON:0015865 +name: pancreaticosplenic lymph node +def: "lymph nodes of the pancreatic tail and spleen, receiving afferents from both organs plus the greater curvature of the stomach; they drain to the celiac lymph nodes." [http://medical-dictionary.thefreedictionary.com/pancreaticosplenic+lymph+nodes] +synonym: "nodi lymphatici panoccidianuperiores" RELATED [http://medical-dictionary.thefreedictionary.com/pancreaticosplenic+lymph+nodes] +synonym: "nodi lymphoidei pancreaticolienales" RELATED [http://medical-dictionary.thefreedictionary.com/pancreaticosplenic+lymph+nodes] +synonym: "nodi lymphoidei pancreaticosplenales" RELATED [http://medical-dictionary.thefreedictionary.com/pancreaticosplenic+lymph+nodes] +synonym: "pancreaticosplenic node" EXACT [FMA:12799] +synonym: "superior pancreatic lymph nodes" RELATED [http://medical-dictionary.thefreedictionary.com/pancreaticosplenic+lymph+nodes] +synonym: "superior pancreatic node" RELATED [FMA:12799] +synonym: "superior pancreaticosplenic lymph node" RELATED [FMA:12799] +xref: FMA:12799 +xref: http://www.snomedbrowser.com/Codes/Details/280723006 +is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node + +[Term] +id: UBERON:0015866 +name: pyloric lymph node +synonym: "pyloric node" EXACT [FMA:12802] +xref: FMA:12802 +xref: http://www.snomedbrowser.com/Codes/Details/280127001 +is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node + +[Term] +id: UBERON:0015867 +name: cystic lymph node +synonym: "cystic node" EXACT [FMA:12804] +xref: FMA:12804 +xref: http://www.snomedbrowser.com/Codes/Details/46081008 +is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node + +[Term] +id: UBERON:0015868 +name: lymph node of epiploic foramen +synonym: "epiploic foramen lymph node" RELATED [FMA:12805] +synonym: "lymph node of anterior border of epiploic foramen" EXACT [FMA:12805] +synonym: "lymph node of anterior border of omental foramen" EXACT [FMA:12805] +synonym: "node of anterior border of epiploic foramen" EXACT [FMA:12805] +synonym: "node of anterior border of omental foramen" EXACT [FMA:12805] +synonym: "nodus foraminalis" EXACT LATIN [FMA:12805, FMA:TA] +synonym: "nodus lymphoideus foraminalis" EXACT LATIN [FMA:12805, FMA:TA] +xref: FMA:12805 +is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node + +[Term] +id: UBERON:0015869 +name: retropharyngeal lymph node +def: "The retropharyngeal lymph nodes, from one to three in number, lie in the buccopharyngeal fascia, behind the upper part of the pharynx and in front of the arch of the atlas, being separated, however, from the latter by the Longus capitis. Their afferents drain the nasal cavities, the nasal part of the pharynx, and the auditory tubes. Their efferents pass to the superior deep cervical glands. They are in the retropharyngeal space." [http://en.wikipedia.org/wiki/Retropharyngeal_lymph_nodes] +synonym: "retropharyngeal glands" RELATED [http://en.wikipedia.org/wiki/Retropharyngeal_lymph_nodes] +synonym: "retropharyngeal lymph node" RELATED [http://en.wikipedia.org/wiki/Retropharyngeal_lymph_nodes] +synonym: "retropharyngeal node" EXACT [FMA:61237] +xref: EMAPA:37724 {source="MA:th"} +xref: FMA:61237 +xref: http://en.wikipedia.org/wiki/Retropharyngeal_lymph_nodes +xref: http://linkedlifedata.com/resource/umls/id/C0229737 +xref: http://www.snomedbrowser.com/Codes/Details/167263004 +xref: MA:0003070 +xref: NCIT:C77649 +is_a: UBERON:0012311 {source="FMA"} ! deep anterior cervical lymph node + +[Term] +id: UBERON:0015870 +name: lymph node of head +def: "A lymph node that is part of a head." [OBOL:automatic] +xref: FMA:61212 +xref: http://www.snomedbrowser.com/Codes/Details/155136006 +is_a: UBERON:0000029 ! lymph node +intersection_of: UBERON:0000029 ! lymph node +intersection_of: part_of UBERON:0000033 ! head +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0015871 +name: facial lymph node +def: "Any of the lymph nodes that are part of a face." [http://en.wikipedia.org/wiki/Facial_lymph_nodes, http://www.bartleby.com/107/177.html] +synonym: "buccal lymph node" EXACT [FMA:61222] +xref: FMA:61222 +xref: http://en.wikipedia.org/wiki/Facial_lymph_nodes +xref: http://www.snomedbrowser.com/Codes/Details/279139005 +is_a: UBERON:0015870 ! lymph node of head +intersection_of: UBERON:0000029 ! lymph node +intersection_of: part_of UBERON:0001456 ! face +relationship: part_of UBERON:0001456 ! face + +[Term] +id: UBERON:0015872 +name: mandibular lymph node +def: "The mandibular lymph node is a lymph node found near the jaw." [http://en.wikipedia.org/wiki/Mandibular_lymph_node] +comment: Editor nodes: consider merging with submandibular, at least for mouse, see http://www.ncbi.nlm.nih.gov/pubmed/16624319 +synonym: "lymphonodi mandibulares" RELATED LATIN [http://en.wikipedia.org/wiki/Mandibular_lymph_node] +synonym: "mandibular node" EXACT [FMA:61227] +synonym: "nodus lymphoideus mandibularis" RELATED LATIN [http://en.wikipedia.org/wiki/Mandibular_lymph_node] +synonym: "nodus mandibularis" EXACT [FMA:TA] +xref: FMA:61227 +xref: http://en.wikipedia.org/wiki/Mandibular_lymph_node +xref: http://www.snomedbrowser.com/Codes/Details/10664000 +xref: MA:0003067 +is_a: UBERON:0015871 {source="FMA"} ! facial lymph node + +[Term] +id: UBERON:0015873 +name: heel skin +def: "A zone of skin that is part of a heel." [OBOL:automatic] +synonym: "skin of heel" EXACT [] +xref: EMAPA:37354 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/244185002 +xref: MA:0003104 +is_a: UBERON:0001512 ! skin of ankle +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0015875 ! heel +relationship: part_of UBERON:0015875 ! heel + +[Term] +id: UBERON:0015875 +name: heel +def: "The part of the foot that is the projection of the calcaneus." [http://en.wikipedia.org/wiki/Heel, http://orcid.org/0000-0002-6601-2165] +synonym: "calcaneal region" EXACT [FMA:24994] +synonym: "heel region" EXACT [FMA:24994] +synonym: "regio calcanea" EXACT [FMA:TA] +xref: FMA:24994 +xref: http://en.wikipedia.org/wiki/Heel +xref: http://www.snomedbrowser.com/Codes/Details/362804005 +xref: MESH:D006365 +is_a: UBERON:0005445 ! segment of pes +intersection_of: UBERON:0005445 ! segment of pes +intersection_of: has_skeleton UBERON:0001450 ! calcaneus +relationship: has_skeleton UBERON:0001450 ! calcaneus +relationship: part_of UBERON:0004454 ! tarsal region + +[Term] +id: UBERON:0015876 +name: pelvic lymph node +def: "Any lymph node within the abdominal pelvic region." [ncithesaurus:Pelvic_Lymph_Node] +synonym: "lymph node of pelvis" EXACT [FMA:12800] +synonym: "pelvic node" RELATED [] +xref: FMA:12800 +xref: http://linkedlifedata.com/resource/umls/id/C0729595 +xref: http://www.snomedbrowser.com/Codes/Details/245352009 +xref: NCIT:C12363 +is_a: UBERON:0000029 ! lymph node +is_a: UBERON:0005179 ! pelvic region element + +[Term] +id: UBERON:0015877 +name: parietal pelvic lymph node +synonym: "paracervical lymph node" RELATED [FMA:66193] +xref: FMA:66193 +is_a: UBERON:0015876 {source="FMA"} ! pelvic lymph node + +[Term] +id: UBERON:0015878 +name: common iliac lymph node +def: "The external iliac lymph nodes, from eight to ten in number, lie along the external iliac vessels. They are arranged in three groups, one on the lateral, another on the medial, and a third on the anterior aspect of the vessels; the third group is, however, sometimes absent. Their principal afferents are derived from the inguinal lymph nodes, the deep lymphatics of the abdominal wall below the umbilicus and of the adductor region of the thigh, and the lymphatics from the glans penis vel clitoridis, the membranous urethra, the prostate, the fundus of the urinary bladder, the cervix uteri, and upper part of the vagina." [http://en.wikipedia.org/wiki/External_iliac_lymph_nodes] +synonym: "common iliac node" EXACT [FMA:12806] +synonym: "external iliac glands" RELATED [http://en.wikipedia.org/wiki/External_iliac_lymph_nodes] +synonym: "external iliac lymph gland" RELATED [http://en.wikipedia.org/wiki/External_iliac_lymph_nodes] +synonym: "iliac lymph node" EXACT [FMA:12806] +synonym: "iliac lymph node" RELATED [http://en.wikipedia.org/wiki/External_iliac_lymph_nodes] +synonym: "noduli iliaci superficiales" RELATED LATIN [http://en.wikipedia.org/wiki/External_iliac_lymph_nodes] +xref: FMA:12806 +xref: http://en.wikipedia.org/wiki/External_iliac_lymph_nodes +xref: http://linkedlifedata.com/resource/umls/id/C0229807 +xref: http://www.snomedbrowser.com/Codes/Details/314889004 +xref: MA:0003066 +xref: NCIT:C32761 +is_a: UBERON:0015877 {source="FMA"} ! parietal pelvic lymph node + +[Term] +id: UBERON:0015880 +name: external iliac lymph node +synonym: "external iliac node" EXACT [FMA:16646] +xref: FMA:16646 +xref: http://linkedlifedata.com/resource/umls/id/C0229815 +xref: http://www.snomedbrowser.com/Codes/Details/245358008 +xref: NCIT:C88143 +is_a: UBERON:0015877 {source="FMA"} ! parietal pelvic lymph node + +[Term] +id: UBERON:0015881 +name: internal iliac lymph node +def: "The internal iliac lymph nodes (or hypogastric) surround the internal iliac artery and its branches (the hypogastric vessels), and receive the lymphatics corresponding to the distribution of the branches of it, i. e. , they receive lymphatics from all the pelvic viscera, from the deeper parts of the perineum, including the membranous and cavernous portions of the urethra, and from the buttock and back of the thigh. It does not receive lymph from the ovary, testis, or superior half of the rectum; the gonads drain to the paraaortic lymph nodes, while the superior half of the rectum drains to the pararectal lymph nodes." [http://en.wikipedia.org/wiki/Internal_iliac_lymph_nodes] +synonym: "internal iliac node" EXACT [FMA:16654] +xref: FMA:16654 +xref: http://en.wikipedia.org/wiki/Internal_iliac_lymph_nodes +xref: http://linkedlifedata.com/resource/umls/id/C0447192 +xref: http://www.snomedbrowser.com/Codes/Details/245357003 +xref: NCIT:C88142 +is_a: UBERON:0015877 {source="FMA"} ! parietal pelvic lymph node + +[Term] +id: UBERON:0015883 +name: gluteal lymph node +synonym: "gluteal node" EXACT [FMA:16657] +xref: FMA:16657 +xref: http://www.snomedbrowser.com/Codes/Details/276154000 +is_a: UBERON:0015877 {source="FMA"} ! parietal pelvic lymph node + +[Term] +id: UBERON:0015884 +name: presymphysial lymph node +synonym: "presymphysial node" EXACT [FMA:16667] +xref: FMA:16667 +xref: http://www.snomedbrowser.com/Codes/Details/279448009 +is_a: UBERON:0015877 {source="FMA"} ! parietal pelvic lymph node + +[Term] +id: UBERON:0015885 +name: cymba conchae of pinna +synonym: "cymba conchae of auricle" EXACT [FMA:61082] +xref: FMA:61082 +xref: http://linkedlifedata.com/resource/umls/id/C0229317 +xref: http://www.snomedbrowser.com/Codes/Details/362545007 +xref: NCIT:C32420 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0006203 {source="FMA"} ! conchal part of pinna + +[Term] +id: UBERON:0015886 +name: root of nail +def: "The part of the nail plate that extends into the dermis (nail matrix)" [http://www.histology.leeds.ac.uk/skin/nails.php] +synonym: "nail groove" EXACT [] +synonym: "nail root" EXACT [FMA:60128] +xref: FMA:60128 +xref: http://www.snomedbrowser.com/Codes/Details/300732009 +xref: NCIT:C33495 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001705 {source="FMA"} ! nail + +[Term] +id: UBERON:0015895 +name: proximal deep inguinal lymph node +def: "One of the deep inguinal lymph nodes located in or adjacent to the femoral canal; sometimes mistaken for a femoral hernia when enlarged." [BTO:0004550] +synonym: "node of Cloquet" RELATED [BTO:0004550] +synonym: "nodus inguinales profundi proximalis" EXACT [FMA:TA] +synonym: "nodus lymphoideus inguinales profundi proximalis" EXACT LATIN [FMA:44303, FMA:TA] +synonym: "nodus lymphoideus inguinalis profundi proximalis" RELATED [BTO:0004550] +synonym: "proximal deep inguinal node" EXACT [FMA:44303] +synonym: "proximal inguinal lymph node" EXACT [FMA:44303] +synonym: "Rosenmueller gland" RELATED [BTO:0004550] +synonym: "Rosenmueller node" RELATED [BTO:0004550] +synonym: "rosenmuller's gland" EXACT [FMA:44303] +synonym: "rosenmuller's node" EXACT [FMA:44303] +xref: BTO:0004550 +xref: FMA:44303 +is_a: UBERON:0009006 {source="FMA"} ! deep inguinal lymph node + +[Term] +id: UBERON:0015917 +name: superficial lymph node +def: "A lymph node that is located close to the surface." [http://orcid.org/0000-0002-6601-2165] +xref: FMA:12767 +xref: NCIT:C102716 +is_a: UBERON:0000029 ! lymph node +intersection_of: UBERON:0000029 ! lymph node +intersection_of: part_of UBERON:0035549 ! vasculature of integument +relationship: part_of UBERON:0035549 ! vasculature of integument + +[Term] +id: UBERON:0015918 +name: deep lymph node +def: "A lymph node that is located deeper within the organism, further from the surface." [http://orcid.org/0000-0002-6601-2165] +xref: FMA:12768 +is_a: UBERON:0000029 ! lymph node +intersection_of: UBERON:0000029 ! lymph node +intersection_of: part_of UBERON:0035551 ! deep vasculature +relationship: part_of UBERON:0035551 ! deep vasculature + +[Term] +id: UBERON:0015919 +name: obsolete tonsillar lymph node +def: "The term tonsillar node can be inaccurate or ambiguous" [http://www.ncbi.nlm.nih.gov/pubmed/16624319] +synonym: "tonsillar node" EXACT [] +is_obsolete: true +consider: SCTID:261419004 + +[Term] +id: UBERON:0015920 +name: obsolete genital lymph node +def: "The term tonsillar node can be inaccurate or ambiguous" [http://www.ncbi.nlm.nih.gov/pubmed/16624319] +synonym: "genital node" EXACT [] +is_obsolete: true + +[Term] +id: UBERON:0015922 +name: accessory mandibular lymph node +is_a: UBERON:0015871 ! facial lymph node + +[Term] +id: UBERON:0015923 +name: superficial parotid lymph node +def: "A parotid lymph node that is located superficially." [http://orcid.org/0000-0002-6601-2165] +synonym: "superficial parotid node" EXACT [FMA:61217] +xref: FMA:61217 +xref: http://en.wikipedia.org/wiki/Superficial_parotid_lymph_nodes +xref: http://www.snomedbrowser.com/Codes/Details/279141006 +is_a: UBERON:0015857 ! parotid lymph node +is_a: UBERON:0015917 ! superficial lymph node +intersection_of: UBERON:0015857 ! parotid lymph node +intersection_of: part_of UBERON:0035549 ! vasculature of integument + +[Term] +id: UBERON:0015925 +name: superficial intraparotid lymph node +synonym: "superficial intraparotid node" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/68339009 +is_a: UBERON:0015917 ! superficial lymph node +is_a: UBERON:0035080 ! intraparotid lymph node +intersection_of: UBERON:0035080 ! intraparotid lymph node +intersection_of: part_of UBERON:0035549 ! vasculature of integument + +[Term] +id: UBERON:0015926 +name: cranial deep lymph node +synonym: "cranial deep node" EXACT [] +is_a: UBERON:0015870 ! lymph node of head + +[Term] +id: UBERON:0016374 +name: sciatic lymph node +def: "A lymph node that is medial to the gluteus superficialis m., caudal to gluteus medius m. and sciatic nerve lymph node" [http://www.ncbi.nlm.nih.gov/pubmed/16624319] +xref: MA:0002884 +is_a: UBERON:0016398 ! lymph node of lower limb +relationship: present_in_taxon NCBITaxon:10090 {source="http://www.ncbi.nlm.nih.gov/pubmed/16624319"} + +[Term] +id: UBERON:0016378 +name: ileocolic lymph node +def: "One of the lymph nodes that form a chain around the ileocolic artery." [http://en.wikipedia.org/wiki/Ileocolic_lymph_nodes] +synonym: "ileocecocolic lymph node" NARROW [MA:0003065, ncithesaurus:Ileocecocolic_Lymph_Node] +synonym: "ileocolic node" RELATED [FMA:16611] +synonym: "nodi lymphoidei ileocolici" EXACT LATIN [http://en.wikipedia.org/wiki/Ileocolic_lymph_nodes] +xref: FMA:16611 +xref: http://en.wikipedia.org/wiki/Ileocolic_lymph_nodes +xref: http://linkedlifedata.com/resource/umls/id/C2697661 +xref: http://www.snomedbrowser.com/Codes/Details/29180003 +xref: MA:0003065 +xref: NCIT:C77653 +is_a: UBERON:0000029 {source="MA"} ! lymph node + +[Term] +id: UBERON:0016382 +name: prescapular lymph node +xref: EMAPA:37723 {source="MA:th"} +xref: MA:0003069 +xref: NCIT:C77654 +is_a: UBERON:0002429 {source="MA"} ! cervical lymph node + +[Term] +id: UBERON:0016386 +name: paraaortic lymph node +def: "The paraaortic lymph nodes (also known as para-aortic, periaortic, and peri-aortic) are a group of lymph nodes that lie in front of the lumbar vertebral bodies near the aorta. These lymph nodes receive drainage from the lower gastrointestinal tract and the pelvic organs." [http://en.wikipedia.org/wiki/Paraaortic_lymph_node] +synonym: "lateral aortic lymph node" EXACT [FMA:16604] +synonym: "lateral aortic node" EXACT [FMA:16604] +synonym: "latero-aortic lymph node" RELATED [FMA:16604] +synonym: "lateroaortic lymph node" RELATED [FMA:16604] +synonym: "left lateral aortic lymph node" RELATED [FMA:16604] +synonym: "para-aortic lymph node" EXACT [FMA:16604] +xref: FMA:16604 +xref: http://en.wikipedia.org/wiki/Paraaortic_lymph_node +xref: MA:0003073 +xref: NCIT:C77643 +is_a: UBERON:0000029 {source="MA"} ! lymph node + +[Term] +id: UBERON:0016390 +name: auricular lymph node +xref: MA:0003092 +is_a: UBERON:0000029 {source="MA"} ! lymph node +relationship: dubious_for_taxon NCBITaxon:10090 {source="http://www.ncbi.nlm.nih.gov/pubmed/16624319"} + +[Term] +id: UBERON:0016391 +name: thymic lymph node +xref: MA:0003118 +is_a: UBERON:0000029 {source="MA"} ! lymph node + +[Term] +id: UBERON:0016392 +name: mastoid lymph node +def: "The mastoid lymph nodes (retroauricular lymph nodes, posterior auricular glands), usually two in number, are situated on the mastoid insertion of the Sternocleidomastoideus, beneath the Auricularis posterior. Their afferent vessels drain the posterior part of the temporoparietal region, the upper part of the cranial surface of the auricula or pinna, and the back of the external acoustic meatus; their efferents pass to the superior deep cervical glands." [http://en.wikipedia.org/wiki/Mastoid_lymph_nodes] +synonym: "mastoid glands" RELATED [http://en.wikipedia.org/wiki/Mastoid_lymph_nodes] +synonym: "mastoid node" EXACT [FMA:61215] +synonym: "postauricular lymph node" EXACT [UBERON:cjm] +synonym: "posterior auricular glands" RELATED [http://en.wikipedia.org/wiki/Mastoid_lymph_nodes] +synonym: "retro-auricular lymph node" EXACT [FMA:61215] +synonym: "retro-auricular node" EXACT [FMA:61215] +synonym: "retroauricular lymph nodes" RELATED [http://en.wikipedia.org/wiki/Mastoid_lymph_nodes] +xref: FMA:61215 +xref: http://en.wikipedia.org/wiki/Mastoid_lymph_nodes +xref: http://www.snomedbrowser.com/Codes/Details/245328002 +xref: http://www.snomedbrowser.com/Codes/Details/279143009 +is_a: UBERON:0015870 {source="FMA"} ! lymph node of head + +[Term] +id: UBERON:0016393 +name: deep parotid lymph node +def: "The deep parotid lymph nodes are lymph nodes found below the parotid gland. The afferents of the subparotid glands drain the nasal part of the pharynx and the posterior parts of the nasal cavities. Their efferents pass to the superior deep cervical glands." [http://en.wikipedia.org/wiki/Deep_parotid_lymph_nodes] +synonym: "deep parotid node" EXACT [FMA:61218] +xref: FMA:61218 +xref: http://en.wikipedia.org/wiki/Deep_parotid_lymph_nodes +xref: http://www.snomedbrowser.com/Codes/Details/279142004 +is_a: UBERON:0015857 {source="FMA"} ! parotid lymph node +is_a: UBERON:0015918 ! deep lymph node + +[Term] +id: UBERON:0016394 +name: anterior auricular lymph node +def: "The preauricular deep parotid lymph nodes (anterior auricular glands or preauricular glands), from one to three in number, lie immediately in front of the tragus. Their afferents drain the lateral surface of the auricula and the skin of the adjacent part of the temporal region; their efferents pass to the superior deep cervical glands." [http://en.wikipedia.org/wiki/Preauricular_deep_parotid_lymph_nodes] +synonym: "anterior auricular glands" RELATED [http://en.wikipedia.org/wiki/Preauricular_deep_parotid_lymph_nodes] +synonym: "pre-auricular lymph node" EXACT [FMA:61219] +synonym: "pre-auricular lymph nodes" RELATED [http://en.wikipedia.org/wiki/Preauricular_deep_parotid_lymph_nodes] +synonym: "pre-auricular node" EXACT [FMA:61219] +synonym: "preauricular glands" RELATED [http://en.wikipedia.org/wiki/Preauricular_deep_parotid_lymph_nodes] +synonym: "preauricular lymph node" EXACT [] +synonym: "preauricular node" EXACT [FMA:61219] +xref: FMA:61219 +xref: http://en.wikipedia.org/wiki/Preauricular_deep_parotid_lymph_nodes +xref: http://www.snomedbrowser.com/Codes/Details/245327007 +xref: NCIT:C103429 +is_a: UBERON:0016393 {source="FMA"} ! deep parotid lymph node +relationship: dubious_for_taxon NCBITaxon:10090 {source="http://www.ncbi.nlm.nih.gov/pubmed/16624319"} + +[Term] +id: UBERON:0016395 +name: infra-auricular lymph node +def: "The infra-auricular deep parotid lymph nodes are a group of lymph nodes found underneath the ear." [http://en.wikipedia.org/wiki/Infra-auricular_deep_parotid_lymph_nodes] +synonym: "infra-auricular deep node" EXACT [] +synonym: "infra-auricular deep parotid lymph node" EXACT [] +synonym: "infra-auricular deep parotid node" EXACT [] +synonym: "infra-auricular node" EXACT [FMA:61220] +xref: FMA:61220 +xref: http://en.wikipedia.org/wiki/Infra-auricular_deep_parotid_lymph_nodes +xref: http://www.snomedbrowser.com/Codes/Details/22509006 +is_a: UBERON:0016393 {source="FMA"} ! deep parotid lymph node + +[Term] +id: UBERON:0016396 +name: intraglandular lymph node +synonym: "intraglandular node" EXACT [FMA:61221] +xref: FMA:61221 +is_a: UBERON:0016393 {source="FMA"} ! deep parotid lymph node + +[Term] +id: UBERON:0016397 +name: submental lymph node +def: "The submental lymph nodes (or suprahyoid) are situated between the anterior bellies of the Digastrici. Their afferents drain the central portions of the lower lip and floor of the mouth and the apex of the tongue. Their efferents pass partly to the submandibular lymph nodes and partly to a gland of the deep cervical group situated on the internal jugular vein at the level of the cricoid cartilage." [http://en.wikipedia.org/wiki/Submental_lymph_nodes] +synonym: "level Ia neck node" EXACT [FMA:61229] +synonym: "submental glands" RELATED [http://en.wikipedia.org/wiki/Submental_lymph_nodes] +synonym: "submental node" EXACT [FMA:61229] +synonym: "suprahyoid glands" RELATED [http://en.wikipedia.org/wiki/Submental_lymph_nodes] +xref: FMA:61229 +xref: http://en.wikipedia.org/wiki/Submental_lymph_nodes +xref: http://www.snomedbrowser.com/Codes/Details/245318006 +is_a: UBERON:0015870 {source="FMA"} ! lymph node of head +relationship: dubious_for_taxon NCBITaxon:10090 {source="http://www.ncbi.nlm.nih.gov/pubmed/16624319"} + +[Term] +id: UBERON:0016398 +name: lymph node of lower limb +def: "A lymph node that is part of a hindlimb." [OBOL:automatic] +xref: FMA:44310 +xref: http://www.snomedbrowser.com/Codes/Details/361109000 +is_a: UBERON:0000029 ! lymph node +intersection_of: UBERON:0000029 ! lymph node +intersection_of: part_of UBERON:0002103 ! hindlimb +relationship: part_of UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0016399 +name: lymph node of upper limb +def: "A lymph node that is part of a forelimb." [OBOL:automatic] +xref: FMA:44311 +xref: http://www.snomedbrowser.com/Codes/Details/276155004 +is_a: UBERON:0000029 ! lymph node +intersection_of: UBERON:0000029 ! lymph node +intersection_of: part_of UBERON:0002102 ! forelimb +relationship: part_of UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0016400 +name: infrapatellar fat pad +def: "The infrapatellar fat pad, also known as Hoffa's fat pad, is a cylindrical piece of fat that is situated under and behind the patella bone within the knee." [http://en.wikipedia.org/wiki/Infrapatellar_fat_pad] +xref: FMA:58772 +xref: http://en.wikipedia.org/wiki/Infrapatellar_fat_pad +xref: http://www.snomedbrowser.com/Codes/Details/282128003 +is_a: UBERON:0003577 ! knee connective tissue +is_a: UBERON:0003916 ! fat pad +intersection_of: UBERON:0003916 ! fat pad +intersection_of: part_of UBERON:0001465 ! knee +relationship: located_in UBERON:0013069 ! popliteal area + +[Term] +id: UBERON:0016401 +name: pancreaticoduodenal lymph node +synonym: "pancreaticoduodenal node" EXACT [FMA:16623] +xref: FMA:16623 +xref: http://www.snomedbrowser.com/Codes/Details/281152007 +is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node +is_a: UBERON:0017672 ! abdominal viscera +relationship: located_in UBERON:0001264 ! pancreas +relationship: present_in_taxon NCBITaxon:10090 {source="http://www.ncbi.nlm.nih.gov/pubmed/16624319"} + +[Term] +id: UBERON:0016402 +name: mesocolic lymph node +xref: FMA:300965 +xref: http://en.wikipedia.org/wiki/Mesocolic_lymph_nodes +is_a: UBERON:0039168 {source="FMA"} ! colic lymph node +relationship: present_in_taxon NCBITaxon:10090 {source="http://www.ncbi.nlm.nih.gov/pubmed/16624319"} + +[Term] +id: UBERON:0016403 +name: thoracic wall +def: "The thoracic wall (or chest wall) is the boundary of the thoracic cavity. The bony portion is known as the thoracic cage. However, the wall also includes muscle, skin, and fascia." [http://en.wikipedia.org/wiki/Thoracic_wall] +synonym: "chest wall" RELATED [http://en.wikipedia.org/wiki/Thoracic_wall] +xref: FMA:10428 +xref: MESH:A01.911.850 +xref: Thoracic:wall +is_a: UBERON:0000060 ! anatomical wall +relationship: part_of UBERON:0000915 ! thoracic segment of trunk + +[Term] +id: UBERON:0016404 +name: cervical vertebral arch joint +def: "A vertebral arch joint that is part of a cervical region of vertebral column." [OBOL:automatic] +subset: pheno_slim +synonym: "cervical facet joint" EXACT [FMA:13668] +synonym: "joint of cervical vertebral arch" EXACT [FMA:13668] +synonym: "joint of cervical vertebral articular process" EXACT [FMA:13668] +synonym: "zygapophyseal joint of cervical vertebrae" EXACT [FMA:13668] +synonym: "zygapophysial joint of cervical vertebrae" EXACT [FMA:13668] +xref: FMA:13668 +is_a: UBERON:0001067 ! vertebral arch joint +intersection_of: UBERON:0001067 ! vertebral arch joint +intersection_of: part_of UBERON:0006072 ! cervical region of vertebral column +relationship: part_of UBERON:0006072 ! cervical region of vertebral column + +[Term] +id: UBERON:0016405 +name: pulmonary capillary +def: "A capillary that is part of a lung." [OBOL:automatic] +subset: pheno_slim +synonym: "capillary of lung" EXACT [FMA:14121] +xref: FMA:14121 +is_a: UBERON:0003512 ! lung blood vessel +is_a: UBERON:0003526 ! respiratory system capillary +intersection_of: UBERON:0001982 ! capillary +intersection_of: part_of UBERON:0002048 ! lung + +[Term] +id: UBERON:0016408 +name: corona of glans penis +def: "The circumference of the base of the glans forms a rounded projecting border, the corona of the glans penis, overhanging a deep retroglandular sulcus, behind which is the neck of the penis." [http://en.wikipedia.org/wiki/Corona_of_glans_penis] +subset: pheno_slim +synonym: "corona glandis" RELATED LATIN [http://en.wikipedia.org/wiki/Corona_of_glans_penis] +synonym: "corona of penis" EXACT [] +synonym: "glans corona" EXACT [FMA:19627] +xref: FMA:19627 +xref: http://en.wikipedia.org/wiki/Corona_of_glans_penis +xref: http://www.snomedbrowser.com/Codes/Details/362274002 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0001299 {source="FMA"} ! glans penis + +[Term] +id: UBERON:0016409 +name: base of glans penis +subset: pheno_slim +synonym: "glans penile base" EXACT [FMA:19649] +xref: FMA:19649 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0001299 {source="FMA"} ! glans penis + +[Term] +id: UBERON:0016410 +name: male breast +def: "A breast that is part of a male organism." [OBOL:automatic] +subset: pheno_slim +synonym: "mamma masculina" EXACT [FMA:19901] +xref: FMA:19901 +xref: http://linkedlifedata.com/resource/umls/id/C0222604 +xref: NCIT:C33048 +is_a: UBERON:0000310 ! breast +intersection_of: UBERON:0000310 ! breast +intersection_of: part_of UBERON:0003101 ! male organism +relationship: part_of UBERON:0003101 ! male organism + +[Term] +id: UBERON:0016411 +name: obsolete intergluteal cleft +is_obsolete: true +consider: UBERON:0036013 +consider: UBERON:0036014 + +[Term] +id: UBERON:0016412 +name: central part of body of bony vertebral centrum +subset: pheno_slim +synonym: "central part of body of vertebra" EXACT [FMA:24003] +xref: FMA:24003 +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0001075 {source="FMA"} ! bony vertebral centrum + +[Term] +id: UBERON:0016413 +name: medullary cavity of long bone +subset: pheno_slim +synonym: "central medullary cavity of long bone" RELATED [FMA:24023] +xref: FMA:24023 +is_a: UBERON:0002484 ! bone marrow cavity +intersection_of: UBERON:0002484 ! bone marrow cavity +intersection_of: part_of UBERON:0002495 ! long bone +relationship: part_of UBERON:0002495 ! long bone + +[Term] +id: UBERON:0016416 +name: anterior chest +def: "Subdivision of thorax which is anterior to the plane of the posterior boundary of the middle mediastinum." [FMA:24816] +subset: pheno_slim +synonym: "anterior thoracic region" EXACT [FMA:24816] +synonym: "front of chest" EXACT [FMA:24816] +synonym: "ventral chest" EXACT [HP:0007542] +xref: FMA:24816 +xref: http://www.snomedbrowser.com/Codes/Details/182331006 +is_a: UBERON:0000475 ! organism subdivision +relationship: part_of UBERON:0001443 {source="FMA"} ! chest + +[Term] +id: UBERON:0016418 +name: nasion +def: "The intersection of the frontal and two nasal bones of the human skull. Its manifestation on the visible surface of the face is a distinctly depressed area directly between the eyes, just superior to the bridge of the nose." [http://en.wikipedia.org/wiki/Nasion] +subset: pheno_slim +xref: FMA:264779 +xref: http://en.wikipedia.org/wiki/Nasion +is_a: UBERON:0006983 ! anatomical point +intersection_of: UBERON:0006983 ! anatomical point +intersection_of: connects UBERON:0000209 ! tetrapod frontal bone +intersection_of: connects UBERON:0006813 ! nasal skeleton +relationship: connects UBERON:0000209 ! tetrapod frontal bone +relationship: connects UBERON:0006813 ! nasal skeleton +relationship: part_of UBERON:0003129 ! skull + +[Term] +id: UBERON:0016419 +name: bony part of vertebral arch +synonym: "bony part of arch of vertebra" EXACT [FMA:29741] +xref: FMA:29741 +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0003861 {source="FMA"} ! neural arch + +[Term] +id: UBERON:0016422 +name: compact bone of long bone +def: "A compact bone tissue that is part of a bone tissue of long bone." [OBOL:automatic] +subset: pheno_slim +xref: FMA:32674 +is_a: UBERON:0001439 ! compact bone tissue +is_a: UBERON:0005808 ! bone tissue of long bone +intersection_of: UBERON:0001439 ! compact bone tissue +intersection_of: part_of UBERON:0005808 ! bone tissue of long bone + +[Term] +id: UBERON:0016423 +name: compact bone of diaphysis +def: "A compact bone tissue that is part of a diaphysis." [OBOL:automatic] +subset: pheno_slim +xref: FMA:32678 +is_a: UBERON:0001439 ! compact bone tissue +is_a: UBERON:0005808 ! bone tissue of long bone +intersection_of: UBERON:0001439 ! compact bone tissue +intersection_of: part_of UBERON:0004769 ! diaphysis +relationship: part_of UBERON:0004769 ! diaphysis + +[Term] +id: UBERON:0016425 +name: epiphyseal plate of radius +def: "A epiphyseal plate that is part of a radius bone." [OBOL:automatic] +subset: pheno_slim +xref: FMA:34354 +is_a: UBERON:0002516 ! epiphyseal plate +is_a: UBERON:0004268 ! lower arm connective tissue +is_a: UBERON:0007390 ! pectoral appendage cartilage tissue +intersection_of: UBERON:0002516 ! epiphyseal plate +intersection_of: part_of UBERON:0001423 ! radius bone +relationship: part_of UBERON:0001423 ! radius bone + +[Term] +id: UBERON:0016426 +name: proximal interphalangeal joint of little finger +subset: pheno_slim +xref: FMA:35324 +is_a: UBERON:0007732 ! interphalangeal joint of manual digit 5 +is_a: UBERON:0009767 ! proximal interphalangeal joint +intersection_of: UBERON:0009767 ! proximal interphalangeal joint +intersection_of: part_of UBERON:0003625 ! manual digit 5 + +[Term] +id: UBERON:0016430 +name: palmar branch of median nerve +def: "The palmar branch of the median nerve is a branch of the median nerve which arises at the lower part of the forearm and innervates skin of proximal central palm and thenar eminence." [http://en.wikipedia.org/wiki/Palmar_branch_of_the_median_nerve, http://medical-dictionary.thefreedictionary.com/palmar+branch+of+median+nerve] +subset: pheno_slim +synonym: "median nerve palmar branch" EXACT [FMA:44836] +synonym: "palmar branch of anterior interosseous nerve" EXACT [FMA:44836] +synonym: "palmar cutaneous branch of median nerve" EXACT [FMA:44836] +synonym: "ramus palmaris (nervus medianus)" EXACT LATIN [FMA:44836] +synonym: "ramus palmaris nervus interossei antebrachii anterior" EXACT LATIN [FMA:44836, FMA:TA] +xref: FMA:44836 +xref: http://en.wikipedia.org/wiki/Palmar_branch_of_the_median_nerve +is_a: UBERON:0003433 ! arm nerve +relationship: branching_part_of UBERON:0001148 {source="FMA"} ! median nerve +relationship: innervates UBERON:0008878 ! palmar part of manus +relationship: innervates UBERON:0017716 ! thenar eminence +relationship: part_of UBERON:0001148 ! median nerve + +[Term] +id: UBERON:0016435 +name: chest wall +def: "Subdivision of thorax which includes all structures from the skin to the costal pleura. Examples: There is only one chest wall." [FMA:50060] +subset: pheno_slim +xref: EMAPA:37233 {source="MA:th"} +xref: FMA:50060 +xref: http://www.snomedbrowser.com/Codes/Details/181608004 +xref: NCIT:C62484 +is_a: UBERON:0000060 ! anatomical wall +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0001443 ! chest +relationship: part_of UBERON:0001443 ! chest + +[Term] +id: UBERON:0016440 +name: glabella region of bone +def: "A zone of the frontal bone that connects the supraorbital rirdges." [http://en.wikipedia.org/wiki/Glabella, http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "glabella" BROAD [FMA:52851] +synonym: "glabellar surface of frontal bone" EXACT [FMA:57136] +xref: FMA:52851 +xref: FMA:57136 +xref: http://www.snomedbrowser.com/Codes/Details/137561005 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0005913 ! zone of bone organ +intersection_of: connects UBERON:0011576 {minCardinality="2", maxCardinality="2"} ! supraorbital ridge +relationship: connects UBERON:0011576 ! supraorbital ridge +relationship: part_of UBERON:0000209 ! tetrapod frontal bone +relationship: part_of UBERON:0034766 ! glabella region + +[Term] +id: UBERON:0016442 +name: median palatine suture +def: "the line of junction between the horizontal parts of the palatine bones that extends from both sides of the skull to form the posterior part of the hard palate." [http://medical-dictionary.thefreedictionary.com/median+palatine+suture] +subset: pheno_slim +synonym: "median palatine suture of skull" EXACT [FMA:52966] +synonym: "middle palatine suture of skull" EXACT [FMA:52966] +synonym: "midpalatal suture of skull" EXACT [FMA:52966] +xref: FMA:52966 +is_a: UBERON:0035127 ! suture of hard palate +intersection_of: UBERON:0035127 ! suture of hard palate +intersection_of: connects UBERON:0001682 {minCardinality="2", maxCardinality="2"} ! palatine bone +relationship: connects UBERON:0001682 ! palatine bone + +[Term] +id: UBERON:0016446 +name: hair of head +def: "A strand of hair that is part of a head." [OBOL:automatic] +subset: pheno_slim +synonym: "hair of scalp" EXACT [FMA:54241] +synonym: "head hair" EXACT [FMA:54241] +xref: FMA:54241 +is_a: UBERON:0001037 ! strand of hair +intersection_of: UBERON:0001037 ! strand of hair +intersection_of: part_of UBERON:0000033 ! head +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0016447 +name: hair of trunk +def: "A strand of hair that is part of a trunk." [OBOL:automatic] +subset: pheno_slim +synonym: "trunk hair" EXACT [FMA:54250] +xref: FMA:54250 +is_a: UBERON:0001037 ! strand of hair +intersection_of: UBERON:0001037 ! strand of hair +intersection_of: part_of UBERON:0002100 ! trunk +relationship: part_of UBERON:0002100 ! trunk + +[Term] +id: UBERON:0016452 +name: upper secondary premolar tooth +subset: pheno_slim +synonym: "maxillary secondary premolar tooth" EXACT [FMA:55716] +synonym: "permanent upper premolar tooth" RELATED [FMA:55716] +synonym: "secondary upper premolar tooth" RELATED [FMA:55716] +synonym: "upper permanent premolar tooth" EXACT [FMA:55716] +xref: FMA:55716 +is_a: UBERON:0016944 ! upper premolar tooth +is_a: UBERON:0017270 ! secondary premolar tooth +is_a: UBERON:0018613 ! secondary upper tooth +intersection_of: UBERON:0017270 ! secondary premolar tooth +intersection_of: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0016453 +name: lower secondary premolar tooth +subset: pheno_slim +synonym: "lower permanent premolar tooth" EXACT [FMA:55717] +synonym: "mandibular secondary premolar tooth" EXACT [FMA:55717] +synonym: "permanent lower premolar tooth" RELATED [FMA:55717] +xref: FMA:55717 +is_a: UBERON:0016943 ! lower premolar tooth +is_a: UBERON:0017270 ! secondary premolar tooth +is_a: UBERON:0018614 ! permanent lower tooth +intersection_of: UBERON:0017270 ! secondary premolar tooth +intersection_of: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0016454 +name: upper central secondary incisor tooth +subset: pheno_slim +synonym: "maxillary central permanent incisor tooth" EXACT [] +synonym: "maxillary central secondary incisor tooth" EXACT [FMA:55722] +synonym: "permanent upper central incisor tooth" RELATED [FMA:55722] +synonym: "upper central permanent incisor tooth" EXACT [FMA:55722] +xref: FMA:55722 +is_a: UBERON:0018603 ! upper central incisor tooth +is_a: UBERON:0019253 ! upper secondary incisor tooth +intersection_of: UBERON:0001098 ! incisor tooth +intersection_of: in_central_side_of UBERON:0018645 ! incisor region of dentition +intersection_of: part_of UBERON:0001709 ! upper jaw region +intersection_of: part_of UBERON:0007774 ! secondary dentition + +[Term] +id: UBERON:0016455 +name: upper lateral secondary incisor tooth +subset: pheno_slim +synonym: "maxillary lateral secondary incisor tooth" EXACT [FMA:55724] +synonym: "upper lateral permanent incisor tooth" EXACT [FMA:55724] +xref: FMA:55724 +is_a: UBERON:0018604 ! upper lateral incisor tooth +is_a: UBERON:0019253 ! upper secondary incisor tooth +intersection_of: UBERON:0001098 ! incisor tooth +intersection_of: in_lateral_side_of UBERON:0018645 ! incisor region of dentition +intersection_of: part_of UBERON:0001709 ! upper jaw region +intersection_of: part_of UBERON:0007774 ! secondary dentition + +[Term] +id: UBERON:0016458 +name: esophageal hiatus +def: "A hole in the diaphragm through which the esophagus passes" [HP:0002036] +subset: pheno_slim +synonym: "esophageal hiatus of diaphragm" EXACT [FMA:58289] +synonym: "oesophageal aperture" EXACT [FMA:58289] +synonym: "oesophageal hiatus" EXACT [FMA:58289] +xref: FMA:58289 +is_a: UBERON:0000161 ! orifice +intersection_of: UBERON:0000161 ! orifice +intersection_of: conduit_for UBERON:0001043 ! esophagus +intersection_of: part_of UBERON:0001103 ! diaphragm +relationship: conduit_for UBERON:0001043 ! esophagus +relationship: part_of UBERON:0001103 ! diaphragm + +[Term] +id: UBERON:0016459 +name: posterior pole of lens +def: "the central point on the posterior surface of the lens." [http://www.medilexicon.com/medicaldictionary.php?t=70707] +subset: pheno_slim +synonym: "polus posterior (lens)" EXACT [FMA:58898] +synonym: "polus posterior lentis" EXACT LATIN [] +xref: FMA:58898 +xref: http://www.snomedbrowser.com/Codes/Details/302144008 +xref: NCIT:C33375 +is_a: UBERON:0019210 ! pole of lens +disjoint_from: UBERON:0019208 {source="lexical"} ! anterior pole of lens + +[Term] +id: UBERON:0016462 +name: periorbital skin +def: "A zone of skin in the periorbital region of the face." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "skin of orbital part of face" EXACT [FMA:59350] +xref: EMAPA:37937 {source="MA:th"} +xref: FMA:59350 +is_a: UBERON:1000021 ! skin of face +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0004090 ! periorbital region +relationship: part_of UBERON:0004090 ! periorbital region + +[Term] +id: UBERON:0016464 +name: dorsum of nose +def: "The midline prominence of the nose, extending from the nasal root to the tip." [HP:0011119] +subset: pheno_slim +synonym: "nasal dorsum" EXACT [FMA:59517] +synonym: "nasal ridge" RELATED [HP:0011119] +xref: FMA:59517 +xref: http://www.snomedbrowser.com/Codes/Details/368114008 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0007827 {source="FMA"} ! external nose + +[Term] +id: UBERON:0016466 +name: antihelix +def: "On the pinna, a curved prominence of cartilage, parallel with and in front of the helix, is called the antihelix, also known as the anthelix; this divides above into two crura, the crura antihelicis, between which is a triangular depression, the fossa triangularis." [http://en.wikipedia.org/wiki/Antihelix] +subset: pheno_slim +synonym: "anthelix" RELATED [http://en.wikipedia.org/wiki/Antihelix] +synonym: "antihelical part of pinna" EXACT [FMA:60995] +synonym: "antihelix (auricula)" EXACT [FMA:60995] +synonym: "antihelix of pinna" EXACT [FMA:60995] +xref: FMA:60995 +xref: http://en.wikipedia.org/wiki/Antihelix +xref: http://linkedlifedata.com/resource/umls/id/C0229308 +xref: http://www.snomedbrowser.com/Codes/Details/279612003 +xref: NCIT:C32120 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0016612 {source="http://php.med.unsw.edu.au"} ! auditory hillocks, pharyngeal arch 2 derived +relationship: part_of UBERON:0001757 {source="FMA"} ! pinna + +[Term] +id: UBERON:0016467 +name: antitragus +def: "The antitragus is a feature of human ear anatomy. It is a small tubercle that points anteriorly. It is separated from the tragus by the intertragic notch." [http://en.wikipedia.org/wiki/Antitragus] +subset: pheno_slim +synonym: "antitragal part of pinna" EXACT [FMA:61001] +xref: FMA:61001 +xref: http://en.wikipedia.org/wiki/Antitragus +xref: http://linkedlifedata.com/resource/umls/id/C0229314 +xref: http://www.snomedbrowser.com/Codes/Details/362543000 +xref: NCIT:C32121 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0016612 {source="http://php.med.unsw.edu.au"} ! auditory hillocks, pharyngeal arch 2 derived +relationship: part_of UBERON:0001757 {source="FMA"} ! pinna + +[Term] +id: UBERON:0016475 +name: skin of forehead +def: "A zone of skin that is part of a forehead." [OBOL:automatic] +subset: pheno_slim +synonym: "forehead skin" EXACT [FMA:63883] +xref: EMAPA:37952 {source="MA:th"} +xref: FMA:63883 +is_a: UBERON:1000021 ! skin of face +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0008200 ! forehead +relationship: part_of UBERON:0008200 ! forehead + +[Term] +id: UBERON:0016476 +name: primary incisor tooth +def: "A incisor tooth that is part of a primary dentition." [OBOL:automatic] +subset: pheno_slim +synonym: "deciduous incisor tooth" EXACT [FMA:84200] +synonym: "temporary incisor tooth" EXACT [FMA:84200] +xref: FMA:84200 +xref: http://www.snomedbrowser.com/Codes/Details/51528000 +is_a: UBERON:0001098 ! incisor tooth +is_a: UBERON:0007115 ! deciduous tooth +intersection_of: UBERON:0001098 ! incisor tooth +intersection_of: part_of UBERON:0007116 ! primary dentition + +[Term] +id: UBERON:0016477 +name: zygomatic process of maxilla +def: "The zygomatic process of the maxilla (malar process) is a rough triangular eminence, situated at the angle of separation of the anterior, zygomatic, and orbital surfaces. In front it forms part of the anterior surface. Behind it is concave, and forms part of the infratemporal fossa. Above it is rough and serrated for articulation with the zygomatic bone. Below it presents the prominent arched border which marks the division between the anterior and infratemporal surfaces." [http://en.wikipedia.org/wiki/Zygomatic_process_of_maxilla] +synonym: "malar process" BROAD [http://en.wikipedia.org/wiki/Zygomatic_process_of_maxilla] +synonym: "malar process of maxilla" EXACT [http://en.wikipedia.org/wiki/Zygomatic_process_of_maxilla] +synonym: "processus zygomaticus (maxilla)" EXACT [FMA:52895] +synonym: "processus zygomaticus maxillae" EXACT LATIN [FMA:52895, FMA:TA] +synonym: "zygomatic appendage of maxilla" RELATED [FMA:52895] +synonym: "zygomaticoorbital process of maxilla" EXACT [FMA:52895] +xref: FMA:52895 +xref: http://en.wikipedia.org/wiki/Zygomatic_process_of_maxilla +xref: http://www.snomedbrowser.com/Codes/Details/272684007 +is_a: UBERON:0004529 {source="FMA"} ! anatomical projection + +[Term] +id: UBERON:0016478 +name: liver stroma +def: "A stroma that is part of a liver." [OBOL:automatic] +synonym: "hepatic stroma" EXACT [FMA:17553] +synonym: "stroma of liver" EXACT [FMA:17553] +xref: FMA:17553 +is_a: UBERON:0003891 ! stroma +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0003891 ! stroma +intersection_of: part_of UBERON:0002107 ! liver +relationship: part_of UBERON:0002107 ! liver + +[Term] +id: UBERON:0016479 +name: capsule of liver +def: "A collagenous capsule covering the external surface of the liver." [http://en.wikipedia.org/wiki/Fibrous_capsule_of_Glisson] +synonym: "capsula fibrosa perivascularis" EXACT LATIN [http://en.wikipedia.org/wiki/Fibrous_capsule_of_Glisson] +synonym: "fibrous capsule of Glisson" RELATED [http://en.wikipedia.org/wiki/Fibrous_capsule_of_Glisson] +synonym: "fibrous capsule of liver" EXACT [FMA:15813] +synonym: "glisson's capsule" EXACT [FMA:15813] +synonym: "hepatic capsule" EXACT [FMA:15813] +synonym: "liver capsule" RELATED [http://en.wikipedia.org/wiki/Fibrous_capsule_of_Glisson] +synonym: "tunica fibrosa (hepar)" EXACT [FMA:TA] +synonym: "tunica fibrosa hepatis" EXACT LATIN [FMA:15813, FMA:TA] +xref: FMA:15813 +xref: http://en.wikipedia.org/wiki/Fibrous_capsule_of_Glisson +xref: http://www.snomedbrowser.com/Codes/Details/362185005 +is_a: UBERON:0003893 ! capsule +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0003893 ! capsule +intersection_of: bounding_layer_of UBERON:0002107 ! liver +relationship: bounding_layer_of UBERON:0002107 ! liver +relationship: composed_primarily_of UBERON:0018135 ! fibrocollagenous connective tissue +relationship: part_of UBERON:0002107 ! liver + +[Term] +id: UBERON:0016480 +name: interlobular stroma of liver +subset: pheno_slim +xref: FMA:17525 +is_a: UBERON:0016478 {source="FMA"} ! liver stroma +relationship: adjacent_to UBERON:0004647 ! liver lobule + +[Term] +id: UBERON:0016481 +name: bronchial lymph node +def: "A lymph node that is part of a bronchus." [OBOL:automatic] +xref: http://linkedlifedata.com/resource/umls/id/C1305372 +xref: MA:0003078 +xref: NCIT:C32232 +is_a: UBERON:0000029 ! lymph node +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000029 ! lymph node +intersection_of: part_of UBERON:0002185 ! bronchus +relationship: part_of UBERON:0002185 ! bronchus + +[Term] +id: UBERON:0016482 +name: dental plaque +def: "A soft, thin film of food debris, mucin, and dead epithelial cells deposited on the teeth, providing the medium for the growth of various bacteria. The main inorganic components are calcium and phosphorus, with small amounts of magnesium, potassium, and sodium; the organic matrix consists of polysaccharides, proteins, carbohydrates, lipids, and other components. Plaque plays an important etiologic role in the development of dental caries and periodontal and gingival diseases and provides the base for the development of materia alba; calcified plaque forms dental calculus." [BTO:0000338, Dorlands_Medical_Dictionary:MerckSource] +synonym: "bacterial plaque" RELATED [BTO:0000338] +synonym: "plaque" RELATED [http://orcid.org/0000-0002-6601-2165] +xref: BTO:0000338 +xref: Dental:plaque +xref: MESH:A12.300.300 +is_a: UBERON:0000463 ! organism substance +relationship: adjacent_to UBERON:0001091 {source="BTO"} ! calcareous tooth +relationship: part_of UBERON:0000165 ! mouth + +[Term] +id: UBERON:0016484 +name: subgingival dental plaque +synonym: "subgingival plaque" RELATED [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0016482 ! dental plaque + +[Term] +id: UBERON:0016485 +name: supragingival dental plaque +synonym: "supragingival plaque" RELATED [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0016482 ! dental plaque + +[Term] +id: UBERON:0016486 +name: posterior fornix of vagina +def: "The vaginal fornix that is behind the cervix. It is close to the recto-uterine pouch." [http://en.wikipedia.org/wiki/Vaginal_fornix] +synonym: "pars posterior fornicis vaginae" EXACT [FMA:TA] +synonym: "posterior fornix" BROAD [] +synonym: "posterior part of fornix of vagina" EXACT [FMA:19987] +xref: FMA:19987 +xref: http://www.snomedbrowser.com/Codes/Details/245477006 +is_a: UBERON:0000051 {source="FMA"} ! fornix of vagina +disjoint_from: UBERON:0016487 {source="lexical"} ! anterior fornix of vagina + +[Term] +id: UBERON:0016487 +name: anterior fornix of vagina +def: "The vaginal fornix that is front of the cervix. It is close to the vesico-uterine pouch." [http://en.wikipedia.org/wiki/Vaginal_fornix] +synonym: "anterior fornix" BROAD [] +synonym: "anterior part of fornix of vagina" EXACT [FMA:19986] +synonym: "pars anterior fornicis vaginae" EXACT LATIN [FMA:TA] +xref: FMA:19986 +xref: http://www.snomedbrowser.com/Codes/Details/245476002 +is_a: UBERON:0000051 {source="FMA"} ! fornix of vagina + +[Term] +id: UBERON:0016490 +name: auditory system +def: "is the sensory system for the sense of hearing." [NLXANAT:090817] +xref: Auditory:system +xref: EMAPA:36002 +xref: FMA:7192 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2888 +xref: http://linkedlifedata.com/resource/umls/id/C0587901 +xref: MA:0002443 +xref: NCIT:C12889 +xref: NLXANAT:090817 +xref: OpenCyc:Mx4rvViwtJwpEbGdrcN5Y29ycA +xref: UMLS:C0587901 {source="ncithesaurus:Auditory_System"} +is_a: UBERON:0007037 ! mechanosensory system +relationship: part_of UBERON:0002105 ! vestibulo-auditory system + +[Term] +id: UBERON:0016491 +name: vertebral centrum element +def: "Skeletal element that functionally replaces the notochord[VSAP,modified]." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/207, https://github.com/obophenotype/uberon/issues/80, VSAO:0000183, VSAO:curator] +synonym: "centre vertébral@fr" EXACT [TAO:0000126] +synonym: "centrum" BROAD [VSAO:0000183] +synonym: "centrum of vertebra" EXACT [] +synonym: "périchorde@fr" EXACT [TAO:0000126] +xref: VSAO:0000183 +is_a: UBERON:0004765 {source="VSAO"} ! skeletal element +property_value: dc-contributor https://github.com/cmungall +relationship: part_of UBERON:0010913 {source="VSAO"} ! vertebral element + +[Term] +id: UBERON:0016492 +name: foramen spinosum of sphenoid bone +def: "A foramen in the sphenoid bone through which the middle meningeal artery, middle meningeal vein, and the meningeal branch of the mandibular nerve pass." [http://en.wikipedia.org/wiki/Foramen_spinosum] +synonym: "foramen spinosum" EXACT [FMA:53156] +synonym: "foramen spinosum" EXACT LATIN [http://en.wikipedia.org/wiki/Foramen_spinosum] +xref: FMA:53156 +xref: Foramen:spinosum +xref: http://www.snomedbrowser.com/Codes/Details/369440000 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0013685 ! foramen of skull +intersection_of: UBERON:0013685 ! foramen of skull +intersection_of: conduit_for UBERON:0036143 ! meningeal branch of mandibular nerve +intersection_of: part_of UBERON:0001677 ! sphenoid bone +relationship: conduit_for UBERON:0010250 ! middle meningeal artery +relationship: conduit_for UBERON:0036143 ! meningeal branch of mandibular nerve +relationship: part_of UBERON:0001677 ! sphenoid bone + +[Term] +id: UBERON:0016493 +name: palmaris longus muscle +def: "The palmaris longus is seen as a small tendon between the flexor carpi radialis and the flexor carpi ulnaris, although it is not always present. The muscle is absent in about 14 percent of the population, however this varies greatly with ethnicity. Absence of palmaris does not have any known effect on grip strength. Palmaris longus can be palpated by touching the pads of the fifth and first fingers and flexing the wrist. The tendon, if present, will be very visible." [http://en.wikipedia.org/wiki/Palmaris_longus_muscle] +synonym: "musculus palmaris longus" EXACT LATIN [http://en.wikipedia.org/wiki/Palmaris_longus_muscle] +synonym: "palmaris" BROAD [] +synonym: "palmaris longus" EXACT [FMA:38462] +xref: AAO:0010737 +xref: EMAPA:36205 +xref: FMA:38462 +xref: http://en.wikipedia.org/wiki/Palmaris_longus_muscle +xref: http://www.snomedbrowser.com/Codes/Details/181636009 +is_a: UBERON:0003662 ! forelimb muscle +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: has_muscle_insertion UBERON:4200041 ! aponeurosis palmaris +intersection_of: has_muscle_origin UBERON:0006806 ! entepicondyle of humerus +relationship: has_muscle_insertion UBERON:4200041 ! aponeurosis palmaris +relationship: has_muscle_origin UBERON:0006806 ! entepicondyle of humerus +relationship: innervated_by UBERON:0001148 ! median nerve + +[Term] +id: UBERON:0016496 +name: tendon of palmaris longus +synonym: "palmaris longus tendon" EXACT [FMA:38594] +synonym: "tendon of palmaris longus muscle" RELATED [FMA:38594] +xref: FMA:38594 +is_a: UBERON:0000043 {source="FMA"} ! tendon +is_a: UBERON:0003575 ! wrist connective tissue +relationship: attaches_to UBERON:0016493 ! palmaris longus muscle + +[Term] +id: UBERON:0016497 +name: epicondyle of humerus +def: "A epicondyle that is part of a humerus." [OBOL:automatic] +xref: FMA:321693 +xref: http://www.snomedbrowser.com/Codes/Details/272693008 +xref: NCIT:C114187 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +is_a: UBERON:0009978 ! epicondyle +intersection_of: UBERON:0009978 ! epicondyle +intersection_of: part_of UBERON:0000976 ! humerus +relationship: part_of UBERON:0000976 ! humerus + +[Term] +id: UBERON:0016498 +name: intestinal-cloacal junction +def: "The juncture where the intestine empties into the cloaca." [ZFA:0005782] +synonym: "gut opening" RELATED [ZFA:0005782] +synonym: "intestinal opening" EXACT [ZFA:0005782] +xref: ZFA:0005782 +is_a: UBERON:1100000 ! digestive tract junction +relationship: connects UBERON:0000160 ! intestine +relationship: connects UBERON:0000162 ! cloaca +relationship: located_in UBERON:0012463 {source="ZFA-modified"} ! cloacal lumen + +[Term] +id: UBERON:0016499 +name: esophageal-pneumatic duct sphincter +def: "Sphincter at the junction of the esophagus and pneumatic duct." [ZFA:0000415, ZFA:CVS, ZFA:YMB] +synonym: "oesophagial sphincter" RELATED [ZFA:0000415] +xref: TAO:0000415 +xref: ZFA:0000415 +is_a: UBERON:0007652 ! esophageal sphincter +intersection_of: UBERON:0004590 ! sphincter muscle +intersection_of: connects UBERON:0001043 ! esophagus +intersection_of: connects UBERON:2001430 ! pneumatic duct +intersection_of: part_of UBERON:0001043 ! esophagus +relationship: connects UBERON:0001043 ! esophagus +relationship: connects UBERON:2001430 ! pneumatic duct + +[Term] +id: UBERON:0016500 +name: muscularis mucosa of fundus of urinary bladder +def: "A muscularis mucosa that is part of a fundus of urinary bladder." [OBOL:automatic] +xref: EMAPA:28625 +is_a: UBERON:0006912 ! urinary bladder muscularis mucosa +intersection_of: UBERON:0006676 ! muscularis mucosa +intersection_of: part_of UBERON:0006082 ! fundus of urinary bladder +relationship: part_of UBERON:0006082 ! fundus of urinary bladder + +[Term] +id: UBERON:0016501 +name: muscularis mucosae of fundus of stomach +def: "A muscularis mucosa that is part of a fundus of stomach." [OBOL:automatic] +xref: EMAPA:27165 +xref: FMA:17278 +is_a: UBERON:0001203 ! muscularis mucosae of stomach +intersection_of: UBERON:0006676 ! muscularis mucosa +intersection_of: part_of UBERON:0001160 ! fundus of stomach +relationship: part_of UBERON:0004994 {source="FMA"} ! mucosa of fundus of stomach + +[Term] +id: UBERON:0016502 +name: stomach fundus lumen +def: "A anatomical space that is enclosed by a fundus of stomach." [OBOL:automatic] +synonym: "cavity of fundus of stomach" EXACT [FMA:17077] +synonym: "lumen of fundus of stomach" EXACT [FMA:17077] +synonym: "lumen of stomach fundus" EXACT [] +xref: EMAPA:18382 +xref: FMA:17077 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0001160 ! fundus of stomach +relationship: luminal_space_of UBERON:0001160 ! fundus of stomach +relationship: part_of UBERON:0001160 ! fundus of stomach + +[Term] +id: UBERON:0016504 +name: umbilical ring +def: "A dense fibrous ring surrounding the umbilicus at birth. At about the sixth week of embryological development, the midgut herniates through the umbilical ring; four weeks later it returns to the abdominal cavity and rotates around the superior mesenteric artery." [http://en.wikipedia.org/wiki/Umbilical_ring] +xref: EMAPA:31868 +xref: FMA:19930 +xref: http://www.snomedbrowser.com/Codes/Details/368065003 +xref: Umbilical:ring +is_a: UBERON:0000161 {source="FMA"} ! orifice +relationship: part_of UBERON:0000478 {source="EMAPA"} ! extraembryonic structure +relationship: surrounds UBERON:0007118 ! umbilicus + +[Term] +id: UBERON:0016505 +name: Mullerian tubercle +def: "An elevation on the wall of the embryonic urogenital sinus where the Müllerian ducts enter." [http://www.merriam-webster.com/medical/m%C3%BCllerian%20tubercle] +synonym: "Muellerian tubercle" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "mullerian tubercle" EXACT [FMA:72175] +synonym: "Müllerian tubercle" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: EMAPA:18328 +xref: FMA:72175 +xref: MA:0003239 +is_a: UBERON:0002050 ! embryonic structure +relationship: connects UBERON:0003890 ! Mullerian duct +relationship: part_of UBERON:0000164 ! primitive urogenital sinus +relationship: part_of UBERON:0000474 ! female reproductive system + +[Term] +id: UBERON:0016508 +name: pelvic ganglion +synonym: "inferior hypogastric ganglion" EXACT [FMA:80131] +synonym: "pelvic ganglia" RELATED PLURAL [] +xref: EMAPA:31527 +xref: FMA:80131 +xref: http://www.snomedbrowser.com/Codes/Details/324760006 +is_a: UBERON:0003964 {source="FMA"} ! prevertebral ganglion + +[Term] +id: UBERON:0016509 +name: cavity of right ventricle +def: "Luminal space of the right ventricle of the heart." [http://orcid.org/0000-0002-6601-2165] +synonym: "right ventricle lumen" EXACT [EMAPA:26047] +synonym: "right ventricular cavity" EXACT [FMA:FMA] +xref: EMAPA:26047 +xref: FMA:9291 +is_a: UBERON:0035763 ! cavity of cardiac chamber +intersection_of: UBERON:0002553 ! anatomical cavity +intersection_of: luminal_space_of UBERON:0002080 ! heart right ventricle +relationship: luminal_space_of UBERON:0002080 ! heart right ventricle +relationship: part_of UBERON:0002080 ! heart right ventricle + +[Term] +id: UBERON:0016510 +name: epithelium of male urethra +def: "A epithelium that is part of a male urethra." [OBOL:automatic] +synonym: "male urethral epithelium" EXACT [FMA:FMA] +synonym: "urethral epithelium of male" EXACT [EMAPA:30467] +xref: EMAPA:30467 +xref: FMA:19684 +is_a: UBERON:0002325 ! epithelium of urethra +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001333 ! male urethra +relationship: part_of UBERON:0001333 ! male urethra + +[Term] +id: UBERON:0016511 +name: lamina propria of fundus of stomach +def: "A lamina propria that is part of a mucosa of fundus of stomach." [OBOL:automatic] +synonym: "lamina propria mucosae of fundus of stomach" EXACT [FMA:FMA] +xref: EMAPA:27163 +xref: FMA:17500 +is_a: UBERON:0004780 ! gastrointestinal system lamina propria +intersection_of: UBERON:0000030 ! lamina propria +intersection_of: part_of UBERON:0004994 ! mucosa of fundus of stomach +relationship: part_of UBERON:0004994 ! mucosa of fundus of stomach + +[Term] +id: UBERON:0016512 +name: lumen of duodenum +def: "A anatomical space that is part of a duodenum." [OBOL:automatic] +synonym: "doudenal lumen" EXACT [FMA:FMA] +synonym: "duodenal lumen" EXACT [FMA:FMA] +xref: EMAPA:19080 +xref: FMA:14589 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: part_of UBERON:0002114 ! duodenum +relationship: part_of UBERON:0002114 ! duodenum + +[Term] +id: UBERON:0016513 +name: cavity of left atrium +def: "luminal space of the left atrium of the heart." [http://orcid.org/0000-0002-6601-2165] +synonym: "left atrial cavity" EXACT [FMA:FMA] +synonym: "left atrium lumen" EXACT [EMAPA:26011] +xref: EMAPA:26011 +xref: FMA:9465 +is_a: UBERON:0035763 ! cavity of cardiac chamber +intersection_of: UBERON:0002553 ! anatomical cavity +intersection_of: luminal_space_of UBERON:0002079 ! left cardiac atrium +relationship: luminal_space_of UBERON:0002079 ! left cardiac atrium +relationship: part_of UBERON:0002079 ! left cardiac atrium + +[Term] +id: UBERON:0016514 +name: cavity of left ventricle +def: "luminal space of the left ventricle of the heart." [http://orcid.org/0000-0002-6601-2165] +synonym: "left ventricular cavity" EXACT [FMA:FMA] +xref: EMAPA:26038 +xref: FMA:9466 +is_a: UBERON:0035763 ! cavity of cardiac chamber +intersection_of: UBERON:0002553 ! anatomical cavity +intersection_of: luminal_space_of UBERON:0002084 ! heart left ventricle +relationship: luminal_space_of UBERON:0002084 ! heart left ventricle +relationship: part_of UBERON:0002084 ! heart left ventricle + +[Term] +id: UBERON:0016515 +name: muscular layer of prostatic urethra +def: "A muscular coat that is part of a prostatic urethra." [OBOL:automatic] +synonym: "muscle layer of prostatic part of urethra" EXACT [FMA:FMA] +synonym: "muscle layer of prostatic urethra" EXACT [EMAPA:30956] +synonym: "muscle layer of prostatic urethra" EXACT [FMA:FMA] +synonym: "muscular coat of prostatic urethra" EXACT [FMA:FMA] +xref: EMAPA:30956 +xref: FMA:19699 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0006660 ! muscular coat +intersection_of: UBERON:0006660 ! muscular coat +intersection_of: part_of UBERON:0001335 ! prostatic urethra +relationship: part_of UBERON:0001335 ! prostatic urethra + +[Term] +id: UBERON:0016516 +name: lamina propria of prostatic urethra +def: "A lamina propria that is part of a prostatic urethra." [OBOL:automatic] +synonym: "lamina propria of prostatic part of urethra" EXACT [FMA:FMA] +synonym: "lamina propria of prostatic urethra" EXACT [EMAPA:32303] +xref: EMAPA:32303 +xref: FMA:19693 +is_a: UBERON:0002326 ! lamina propria of urethra +intersection_of: UBERON:0000030 ! lamina propria +intersection_of: part_of UBERON:0001335 ! prostatic urethra +relationship: part_of UBERON:0001335 ! prostatic urethra + +[Term] +id: UBERON:0016517 +name: lumen of jejunum +def: "A anatomical space that is part of a jejunum." [OBOL:automatic] +synonym: "jejunal lumen" EXACT [FMA:FMA] +synonym: "jejunum lumen" EXACT [FMA:FMA] +xref: EMAPA:18729 +xref: FMA:14590 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: part_of UBERON:0002115 ! jejunum +relationship: part_of UBERON:0002115 ! jejunum + +[Term] +id: UBERON:0016519 +name: muscularis mucosae of jejunum +def: "A muscularis mucosa that is part of a jejunum." [OBOL:automatic] +xref: EMAPA:27121 +xref: FMA:15063 +is_a: UBERON:0001210 ! muscularis mucosae of small intestine +intersection_of: UBERON:0006676 ! muscularis mucosa +intersection_of: part_of UBERON:0002115 ! jejunum +relationship: part_of UBERON:0000399 {source="FMA"} ! jejunal mucosa + +[Term] +id: UBERON:0016520 +name: epithelium of female urethra +def: "A epithelium that is part of a female urethra." [OBOL:automatic] +synonym: "female urethral epithelium" EXACT [FMA:FMA] +synonym: "urethral epithelium of female" EXACT [EMAPA:30470] +xref: EMAPA:30470 +xref: FMA:19774 +is_a: UBERON:0002325 ! epithelium of urethra +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001334 ! female urethra +relationship: part_of UBERON:0001334 ! female urethra + +[Term] +id: UBERON:0016522 +name: cavity of right atrium +def: "luminal space of the right atrium of the heart." [http://orcid.org/0000-0002-6601-2165] +synonym: "right atrial cavity" EXACT [FMA:FMA] +xref: EMAPA:26020 +xref: FMA:11359 +is_a: UBERON:0035763 ! cavity of cardiac chamber +intersection_of: UBERON:0002553 ! anatomical cavity +intersection_of: luminal_space_of UBERON:0002078 ! right cardiac atrium +relationship: luminal_space_of UBERON:0002078 ! right cardiac atrium +relationship: part_of UBERON:0002078 ! right cardiac atrium + +[Term] +id: UBERON:0016524 +name: muscle layer of spongiose part of urethra +def: "A muscular coat that is part of a spongiose part of urethra." [OBOL:automatic] +synonym: "muscle layer of penile urethra" EXACT [FMA:FMA] +synonym: "muscle layer of penile urethra" EXACT [EMAPA:30950] +synonym: "muscle layer of spongy urethra" EXACT [FMA:FMA] +synonym: "muscular coat of spongy urethra" EXACT [FMA:FMA] +synonym: "muscular layer of spongy urethra" EXACT [FMA:FMA] +synonym: "tunica muscularis urethrae spongiosa" EXACT LATIN [FMA:19701, FMA:TA] +xref: EMAPA:30950 +xref: FMA:19701 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0006660 ! muscular coat +intersection_of: UBERON:0006660 ! muscular coat +intersection_of: part_of UBERON:0001337 ! spongiose part of urethra +relationship: part_of UBERON:0001337 ! spongiose part of urethra + +[Term] +id: UBERON:0016525 +name: frontal lobe +def: "Frontal lobe is the anterior-most of five lobes of the cerebral hemisphere. It is bounded by the central sulcus on its posterior border and by the longitudinal cerebral fissure on its medial border." [FMA:61824] +subset: efo_slim +synonym: "frontal cortex" NARROW [FMA:61824] +synonym: "frontal region" BROAD [FMA:61824] +synonym: "lobi frontales" EXACT LATIN [NeuroNames:56] +synonym: "lobus frontalis" EXACT LATIN [http://en.wikipedia.org/wiki/Frontal_lobe] +synonym: "regio frontalis" BROAD LATIN [FMA:TA] +synonym: "regio frontalis" BROAD LATIN [FMA:61824, FMA:TA] +xref: BAMS:Frontal_lobe +xref: BIRNLEX:928 +xref: BM:Tel-Cx-FR +xref: CALOHA:TS-0389 +xref: DHBA:12113 +xref: EFO:0000913 +xref: EV:0100167 +xref: FMA:61824 +xref: HBA:4009 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=56 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=56 {source="BIRNLEX:928"} +xref: http://linkedlifedata.com/resource/umls/id/C0016733 +xref: http://linkedlifedata.com/resource/umls/id/C1268977 +xref: http://www.snomedbrowser.com/Codes/Details/180920004 +xref: MAT:0000505 +xref: MESH:A08.186.211.730.885.213.270 +xref: NCIT:C12352 +xref: OpenCyc:Mx4rv3OJ8JwpEbGdrcN5Y29ycA +xref: UMLS:C0016733 {source="BIRNLEX:928"} +xref: UMLS:C0016733 {source="ncithesaurus:Frontal_Lobe"} +xref: UMLS:C1268977 {source="BIRNLEX:928"} +is_a: UBERON:0016526 {source="FMA"} ! lobe of cerebral hemisphere +relationship: adjacent_to UBERON:0001871 ! temporal lobe +relationship: adjacent_to UBERON:0001872 ! parietal lobe +relationship: contributes_to_morphology_of UBERON:0001893 ! telencephalon + +[Term] +id: UBERON:0016526 +name: lobe of cerebral hemisphere +alt_id: UBERON:0000322 +def: "Subdivision of telencephalon which is one of a number of subdivisions of each hemisphere separated by both real landmarks (sulci and fissures) and arbitrary boundaries[FMA,modified]." [FMA:61823] +comment: We use the term lobe broadly as a rough regional area, encompassing homologous regions in smooth-brained mammals. We subdivide the lobes into white matter and neocortical parts. +synonym: "cerebral cortical segment" RELATED [FMA:68603] +synonym: "cerebral hemisphere lobe" EXACT [FMA:61823] +synonym: "cerebral lobe" EXACT [BTO:0000445] +synonym: "lobe of cerebral cortex" EXACT [BIRNLEX:922] +synonym: "lobe parts of cerebral cortex" EXACT [BIRNLEX:922] +synonym: "lobes of the brain" RELATED [BIRNLEX:922] +synonym: "lobi cerebri" EXACT LATIN [FMA:77800, FMA:TA] +synonym: "regional organ part of cerebral cortex" RELATED [FMA:68603] +synonym: "segment of cerebral cortex" RELATED [BIRNLEX:922] +xref: BIRNLEX:922 +xref: BTO:0000445 +xref: FMA:61823 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1210 +xref: http://www.snomedbrowser.com/Codes/Details/272632001 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: fma_set_term FMA:77800 +relationship: part_of UBERON:0001869 ! cerebral hemisphere + +[Term] +id: UBERON:0016527 +name: white matter of cerebral lobe +xref: FMA:256176 +is_a: UBERON:0002437 ! cerebral hemisphere white matter +intersection_of: UBERON:0002437 ! cerebral hemisphere white matter +intersection_of: part_of UBERON:0016526 ! lobe of cerebral hemisphere +relationship: deep_to UBERON:0016529 ! cortex of cerebral lobe +relationship: part_of UBERON:0016526 ! lobe of cerebral hemisphere + +[Term] +id: UBERON:0016528 +name: white matter of frontal lobe +def: "A white matter of cerebral lobe that is part of a frontal lobe." [OBOL:automatic] +synonym: "frontal lobe white matter" EXACT [] +xref: FMA:256178 +xref: http://www.snomedbrowser.com/Codes/Details/362331002 +is_a: UBERON:0016527 ! white matter of cerebral lobe +intersection_of: UBERON:0016527 ! white matter of cerebral lobe +intersection_of: part_of UBERON:0016525 ! frontal lobe +relationship: part_of UBERON:0016525 ! frontal lobe + +[Term] +id: UBERON:0016529 +name: cortex of cerebral lobe +def: "Grey matter neocortex region of a lobe of the cerebral hemisphere." [http://orcid.org/0000-0002-6601-2165] +synonym: "cortex of cerebral hemisphere lobe" EXACT [FMA:242197] +synonym: "cortex of lobe of cerebral hemisphere" EXACT [FMA:242197] +synonym: "gray matter of lobe of cerebral hemisphere" RELATED [FMA:242197] +synonym: "neocortical part of cerebral hemisphere" RELATED [] +xref: FMA:242197 +is_a: UBERON:0005401 ! cerebral hemisphere gray matter +intersection_of: UBERON:0005401 ! cerebral hemisphere gray matter +intersection_of: part_of UBERON:0001950 ! neocortex +intersection_of: part_of UBERON:0016526 ! lobe of cerebral hemisphere +relationship: part_of UBERON:0001950 ! neocortex +relationship: part_of UBERON:0016526 ! lobe of cerebral hemisphere + +[Term] +id: UBERON:0016530 +name: parietal cortex +def: "Gray matter of the parietal region of the neocortex, located in the parietal lobe of gyrencephalic animals. It is continuous anteriorly with the frontal cortex, posteriorly with the occipital cortex and medially with the insular cortex and with the temporal cortex on the posterior/inferior border." [NLX:79282] +subset: pheno_slim +synonym: "cortex of parietal lobe" EXACT [FMA:242203] +synonym: "gray matter of parietal lobe" RELATED [FMA:242203] +synonym: "parietal lobe cortex" EXACT [FMA:242203] +synonym: "parietal neocortex" EXACT [DHBA:10208] +xref: DHBA:10208 +xref: DMBA:16016 +xref: EMAPA:35667 +xref: FMA:242203 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2473 +xref: http://www.snomedbrowser.com/Codes/Details/369217001 +xref: MA:0000916 +xref: NLX:79282 +is_a: UBERON:0016529 ! cortex of cerebral lobe +intersection_of: UBERON:0016529 ! cortex of cerebral lobe +intersection_of: part_of UBERON:0001872 ! parietal lobe +relationship: part_of UBERON:0001872 ! parietal lobe + +[Term] +id: UBERON:0016531 +name: white matter of parietal lobe +def: "A white matter of cerebral lobe that is part of a parietal lobe." [OBOL:automatic] +xref: FMA:256184 +xref: http://www.snomedbrowser.com/Codes/Details/369200008 +is_a: UBERON:0016527 ! white matter of cerebral lobe +intersection_of: UBERON:0016527 ! white matter of cerebral lobe +intersection_of: part_of UBERON:0001872 ! parietal lobe +relationship: part_of UBERON:0001872 ! parietal lobe + +[Term] +id: UBERON:0016534 +name: white matter of temporal lobe +def: "A white matter of cerebral lobe that is part of a temporal lobe." [OBOL:automatic] +xref: FMA:256186 +xref: http://www.snomedbrowser.com/Codes/Details/362344007 +is_a: UBERON:0016527 ! white matter of cerebral lobe +intersection_of: UBERON:0016527 ! white matter of cerebral lobe +intersection_of: part_of UBERON:0001871 ! temporal lobe +relationship: part_of UBERON:0001871 ! temporal lobe + +[Term] +id: UBERON:0016535 +name: white matter of occipital lobe +def: "A white matter of cerebral lobe that is part of a occipital lobe." [OBOL:automatic] +xref: FMA:256188 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=832 +xref: http://www.snomedbrowser.com/Codes/Details/362339000 +is_a: UBERON:0016527 ! white matter of cerebral lobe +intersection_of: UBERON:0016527 ! white matter of cerebral lobe +intersection_of: part_of UBERON:0002021 ! occipital lobe +relationship: part_of UBERON:0002021 ! occipital lobe + +[Term] +id: UBERON:0016536 +name: white matter of limbic lobe +def: "A white matter of cerebral lobe that is part of a limbic lobe." [OBOL:automatic] +xref: FMA:261091 +is_a: UBERON:0016527 ! white matter of cerebral lobe +intersection_of: UBERON:0016527 ! white matter of cerebral lobe +intersection_of: part_of UBERON:0002600 ! limbic lobe +relationship: part_of UBERON:0002600 ! limbic lobe + +[Term] +id: UBERON:0016538 +name: temporal cortex +def: "Gray matter of the temporal region of the neocortex, located in the temporal lobe in gyrencephalic animals" [NLX:94939] +synonym: "cortex of temporal lobe" EXACT [FMA:242201] +synonym: "gray matter of temporal lobe" RELATED [FMA:242201] +synonym: "temporal lobe cortex" EXACT [FMA:242201] +synonym: "temporal neocortex" EXACT [DHBA:10235] +xref: BM:Tel-Cx-Te +xref: DHBA:10235 +xref: DMBA:16044 +xref: FMA:242201 +xref: http://www.snomedbrowser.com/Codes/Details/362343001 +xref: MA:0000941 +xref: NLX:94939 +is_a: UBERON:0016529 ! cortex of cerebral lobe +intersection_of: UBERON:0016529 ! cortex of cerebral lobe +intersection_of: part_of UBERON:0001871 ! temporal lobe +relationship: part_of UBERON:0001871 ! temporal lobe + +[Term] +id: UBERON:0016540 +name: occipital cortex +synonym: "cortex of occipital lobe" EXACT [FMA:242205] +synonym: "gray matter of occipital lobe" RELATED [FMA:242205] +synonym: "occipital lobe cortex" EXACT [FMA:242205] +synonym: "occipital neocortex" EXACT [DHBA:10268] +xref: DHBA:10268 +xref: DMBA:16030 +xref: EMAPA:35604 +xref: FMA:242205 +xref: MA:0000913 +xref: PBA:4004 +is_a: UBERON:0016529 ! cortex of cerebral lobe +intersection_of: UBERON:0016529 ! cortex of cerebral lobe +intersection_of: part_of UBERON:0002021 ! occipital lobe +relationship: part_of UBERON:0002021 ! occipital lobe + +[Term] +id: UBERON:0016542 +name: limbic cortex +synonym: "cortex of limbic lobe" EXACT [FMA:242234] +synonym: "gray matter of limbic lobe" RELATED [FMA:242234] +synonym: "limbic lobe cortex" EXACT [FMA:242234] +xref: FMA:242234 +is_a: UBERON:0016529 ! cortex of cerebral lobe +intersection_of: UBERON:0016529 ! cortex of cerebral lobe +intersection_of: part_of UBERON:0002600 ! limbic lobe +relationship: part_of UBERON:0002600 ! limbic lobe + +[Term] +id: UBERON:0016545 +name: pharyngeal ectoderm +alt_id: UBERON:2001379 +def: "The external part of the developing pharynx that is made of ectoderm. During vertebrate development, pockets form in pharyngeal ectoderm between the pharyngeal arches." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/23020903] +xref: TAO:0001379 +xref: ZFA:0001379 +is_a: UBERON:0000490 ! unilaminar epithelium +is_a: UBERON:0003351 ! pharyngeal epithelium +is_a: UBERON:0005291 ! embryonic tissue +intersection_of: UBERON:0000490 ! unilaminar epithelium +intersection_of: part_of UBERON:0000076 ! external ectoderm +intersection_of: part_of UBERON:0001042 ! chordate pharynx +relationship: part_of UBERON:0000076 ! external ectoderm + +[Term] +id: UBERON:0016547 +name: lower foregut region endoderm +xref: EHDAA2:0000566 +is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0003929 ! digestive tract epithelium +is_a: UBERON:0005911 ! endo-epithelium +relationship: develops_from UBERON:0003258 {source="EHDAA2"} ! endoderm of foregut + +[Term] +id: UBERON:0016548 +name: central nervous system gray matter layer +def: "A layer of of the central nervous system that is part of gray matter." [http://orcid.org/0000-0002-6601-2165] +synonym: "CNS gray matter layer" EXACT [] +synonym: "CNS grey matter layer" EXACT [] +synonym: "gray matter layer of neuraxis" EXACT [FMA:83142] +synonym: "grey matter layer" BROAD [] +synonym: "grey matter layer of neuraxis" EXACT [] +xref: FMA:83142 +is_a: UBERON:0022303 ! nervous system cell part layer +intersection_of: UBERON:0022303 ! nervous system cell part layer +intersection_of: composed_primarily_of UBERON:0002020 ! gray matter +relationship: composed_primarily_of UBERON:0002020 ! gray matter + +[Term] +id: UBERON:0016549 +name: central nervous system white matter layer +def: "A layer of of the central nervous system that is composed of white matter." [http://orcid.org/0000-0002-6601-2165] +synonym: "CNS white matter layer" EXACT [] +synonym: "white matter layer" BROAD [] +synonym: "white matter layer of neuraxis" EXACT [FMA:83898] +xref: FMA:83898 +is_a: UBERON:0022303 ! nervous system cell part layer +intersection_of: UBERON:0022303 ! nervous system cell part layer +intersection_of: composed_primarily_of UBERON:0002316 ! white matter +relationship: composed_primarily_of UBERON:0002316 ! white matter + +[Term] +id: UBERON:0016550 +name: spinal cord column +is_a: UBERON:0011215 ! central nervous system cell part cluster +relationship: part_of UBERON:0002240 ! spinal cord + +[Term] +id: UBERON:0016551 +name: subdivision of spinal cord ventral column +subset: non_informative +is_a: UBERON:0016550 ! spinal cord column +relationship: part_of UBERON:0005375 ! spinal cord ventral column + +[Term] +id: UBERON:0016552 +name: phlegm +def: "mucus produced in the respiratory tract." [http://orcid.org/0000-0002-6601-2165] +xref: http://linkedlifedata.com/resource/umls/id/C0225378 +xref: NCIT:C93171 +is_a: UBERON:0000912 ! mucus +intersection_of: UBERON:0000912 ! mucus +intersection_of: produced_by UBERON:0000065 ! respiratory tract +relationship: produced_by UBERON:0000065 ! respiratory tract + +[Term] +id: UBERON:0016553 +name: respiratory system mucus +def: "Any mucus produced by a mucosae of the respiratory system. This includes the mucus produced in the nasal cavity (nasal mucus) and mucus produced in the respiratory tract (phlegm)." [http://en.wikipedia.org/wiki/Nasal_mucus#Respiratory_system, http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0000912 ! mucus +intersection_of: UBERON:0000912 ! mucus +intersection_of: produced_by UBERON:0004785 ! respiratory system mucosa +relationship: produced_by UBERON:0004785 ! respiratory system mucosa + +[Term] +id: UBERON:0016554 +name: white matter of midbrain +def: "A white matter that is part of the midbrain." [OBOL:automatic] +synonym: "mesencephalic white matter" EXACT [HBA:MESWM] +xref: DHBA:10650 +xref: FMA:83936 +xref: HBA:265505382 +is_a: UBERON:0003544 ! brain white matter +intersection_of: UBERON:0002316 ! white matter +intersection_of: part_of UBERON:0001891 ! midbrain +relationship: part_of UBERON:0001891 ! midbrain + +[Term] +id: UBERON:0016555 +name: stria of telencephalon +def: "A stria of neuraxis that is part of a telencephalon." [OBOL:automatic] +synonym: "telencephalon stria" EXACT [FMA:67950] +xref: FMA:67950 +is_a: UBERON:0011299 ! white matter of telencephalon +is_a: UBERON:0013199 ! stria of neuraxis +intersection_of: UBERON:0013199 ! stria of neuraxis +intersection_of: part_of UBERON:0001893 ! telencephalon + +[Term] +id: UBERON:0016559 +name: superficial cerebral vein +def: "The superficial cerebral veins are a group of veins in the head. This group includes the superior cerebral veins." [http://en.wikipedia.org/wiki/Superficial_cerebral_veins] +synonym: "cortical cerebral vein" EXACT [FMA:50982] +xref: FMA:50982 +xref: http://en.wikipedia.org/wiki/Superficial_cerebral_veins +is_a: UBERON:0001663 {source="FMA"} ! cerebral vein +is_a: UBERON:0035550 ! superficial vein + +[Term] +id: UBERON:0016564 +name: deep cerebral vein +def: "The deep cerebral veins are a group of veins in the head. This group includes the superior thalamostriate vein." [http://en.wikipedia.org/wiki/Deep_cerebral_veins] +xref: FMA:50989 +xref: http://en.wikipedia.org/wiki/Deep_cerebral_veins +is_a: UBERON:0001663 {source="FMA"} ! cerebral vein + +[Term] +id: UBERON:0016565 +name: cerebral blood vessel +def: "A blood vessel that is part of a cerebellum." [OBOL:automatic] +is_a: UBERON:0003499 ! brain blood vessel +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0002037 ! cerebellum +relationship: part_of UBERON:0002037 ! cerebellum + +[Term] +id: UBERON:0016566 +name: pit +def: "An roughly circular indentation in a surface." [AEO:0000204, AEO:JB] +subset: upper_level +xref: AEO:0000204 +is_a: UBERON:0036215 ! anatomical surface region + +[Term] +id: UBERON:0016567 +name: statoconial membrane +def: "An acellular membrane in the vestibular labyrinth that is composed of the otoconial layer, gelatinous layer, and a subcupular meshwork." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/2482728] +comment: See https://sourceforge.net/p/obo/zebrafish-anatomy-zfa-term-requests/132/ +synonym: "otoconial-statoconial membrane" EXACT [ISBN:1565939948] +synonym: "otolith membrane" NARROW [] +xref: FMA:75570 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005764 {source="FMA"} ! acellular membrane +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: bounding_layer_of UBERON:0002518 {source="Wikipedia"} ! otolith organ +relationship: part_of UBERON:0002518 ! otolith organ + +[Term] +id: UBERON:0016568 +name: gelatinous layer of statoconial membrane +xref: FMA:75588 +is_a: UBERON:0000476 {source="FMA"} ! acellular anatomical structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0016567 {source="FMA"} ! statoconial membrane + +[Term] +id: UBERON:0016569 +name: subcupular meshwork of statoconial membrane +def: "An acellular membrane in the inner ear that is part of the statoconial membrane and consists of long branching filaments cross-bridged to one another. The filaments are continuous with those of the otolithic membrane on one side and with the surface of the epithelium on the other." [ISBN:1565939948] +is_a: UBERON:0000476 ! acellular anatomical structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000476 ! acellular anatomical structure +intersection_of: adjacent_to UBERON:0000483 ! epithelium +intersection_of: adjacent_to UBERON:0002519 ! otolithic part of statoconial membrane +intersection_of: part_of UBERON:0016567 ! statoconial membrane +relationship: adjacent_to UBERON:0000483 ! epithelium +relationship: adjacent_to UBERON:0002519 ! otolithic part of statoconial membrane +relationship: part_of UBERON:0016567 ! statoconial membrane + +[Term] +id: UBERON:0016570 +name: lamina of gray matter of spinal cord +synonym: "rexed lamina" EXACT [FMA:68861] +xref: FMA:68861 +xref: http://neurolex.org/wiki/Category\:Rexed_spinal_cord_parcellation_scheme_region +xref: Rexed:laminae +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +intersection_of: UBERON:0022303 ! nervous system cell part layer +intersection_of: part_of UBERON:0002315 ! gray matter of spinal cord +relationship: part_of UBERON:0002315 ! gray matter of spinal cord + +[Term] +id: UBERON:0016573 +name: obsolete lamina II of gray matter of spinal cord +is_obsolete: true +replaced_by: UBERON:0002181 + +[Term] +id: UBERON:0016574 +name: lamina III of gray matter of spinal cord +synonym: "lamina 3" RELATED [NeuroNames:1695] +synonym: "lamina III" RELATED [NeuroNames:1695] +synonym: "lamina spinale III" EXACT LATIN [FMA:68864, FMA:TA] +synonym: "lamina spinalis III" RELATED LATIN [NeuroNames:1695] +synonym: "rexed lamina III" EXACT [FMA:68864] +synonym: "Rexed's lamina III" RELATED [NeuroNames:1695] +synonym: "spinal lamina III" EXACT [FMA:68864] +xref: FMA:68864 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1695 +is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord +relationship: part_of UBERON:0016610 ! nucleus proprius of spinal cord + +[Term] +id: UBERON:0016575 +name: lamina IV of gray matter of spinal cord +synonym: "lamina 4" RELATED [NeuroNames:1696] +synonym: "lamina IV" RELATED [NeuroNames:1696] +synonym: "lamina IV@es" RELATED [NeuroNames:1696] +synonym: "lamina IV@it" RELATED [NeuroNames:1696] +synonym: "lamina spinale IV" EXACT LATIN [FMA:68865, FMA:TA] +synonym: "lamina spinalis IV" RELATED LATIN [NeuroNames:1696] +synonym: "rexed lamina IV" EXACT [FMA:68865] +synonym: "Rexed's lamina IV" RELATED [NeuroNames:1696] +synonym: "spinal lamina IV" EXACT [FMA:68865] +xref: FMA:68865 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1696 +is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord +relationship: part_of UBERON:0016610 ! nucleus proprius of spinal cord + +[Term] +id: UBERON:0016576 +name: lamina V of gray matter of spinal cord +def: "Spinal lamina V is a lamina of the spinal cord. It is also known as the neck of the posterior horn." [http://en.wikipedia.org/wiki/Spinal_lamina_V] +synonym: "lamina 5" RELATED [NeuroNames:1698] +synonym: "lamina spinalis V" RELATED LATIN [NeuroNames:1698] +synonym: "lamina V" RELATED [NeuroNames:1698] +synonym: "neck of the dorsal horn" RELATED [NeuroNames:1698] +synonym: "rexed lamina V" EXACT [FMA:68866] +synonym: "Rexed's lamina V" RELATED [NeuroNames:1698] +synonym: "spinal lamina V" EXACT [FMA:68866] +xref: FMA:68866 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1698 +xref: http://en.wikipedia.org/wiki/Spinal_lamina_V +is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord +relationship: part_of UBERON:0016610 ! nucleus proprius of spinal cord + +[Term] +id: UBERON:0016577 +name: lamina VI of gray matter of spinal cord +def: "Spinal lamina VI is a lamina of the spinal cord. It is also known as the base of the posterior horn." [http://en.wikipedia.org/wiki/Spinal_lamina_VI] +synonym: "basal nucleus of the dorsal horn" RELATED [NeuroNames:2007] +synonym: "base of dorsal horn of spinal cord" RELATED [NeuroNames:2007] +synonym: "base of posterior horn of spinal cord" RELATED [NeuroNames:2007] +synonym: "base of the dorsal horn" RELATED [NeuroNames:1699] +synonym: "base of the posterior horn" RELATED [NeuroNames:2007] +synonym: "basis cornuis dorsalis" RELATED LATIN [NeuroNames:2007] +synonym: "basis cornus dorsalis" RELATED LATIN [NeuroNames:2007] +synonym: "basis cornus dorsalis medullae spinalis" RELATED LATIN [NeuroNames:2007] +synonym: "basis cornus posterioris" RELATED LATIN [NeuroNames:2007] +synonym: "basis cornus posterioris medullae spinalis" RELATED LATIN [NeuroNames:2007] +synonym: "lamina 6" RELATED LATIN [NeuroNames:1699] +synonym: "lamina spinalis VI" RELATED LATIN [NeuroNames:1699] +synonym: "lamina VI" RELATED [NeuroNames:1699] +synonym: "lamina VI" RELATED LATIN [NeuroNames:1699] +synonym: "rexed lamina VI" EXACT [FMA:68867] +synonym: "Rexed's lamina VI" RELATED [NeuroNames:1699] +synonym: "spinal cord basal nucleus" RELATED [MA:0001120] +synonym: "spinal lamina VI" EXACT [FMA:68867] +xref: EMAPA:37632 {source="MA:th"} +xref: FMA:68867 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1699 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2007 +xref: http://en.wikipedia.org/wiki/Spinal_lamina_VI +xref: MA:0001120 +is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord +relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord + +[Term] +id: UBERON:0016578 +name: lamina VII of gray matter of spinal cord +synonym: "lamina 7" RELATED LATIN [NeuroNames:1700] +synonym: "lamina spinalis VII" RELATED LATIN [NeuroNames:1700] +synonym: "lamina VII" RELATED [NeuroNames:1700] +synonym: "lamina VII" RELATED LATIN [NeuroNames:1700] +synonym: "rexed lamina VII" EXACT [FMA:68868] +synonym: "Rexed's lamina VII" RELATED [NeuroNames:1700] +synonym: "spinal lamina VII" EXACT [FMA:68868] +xref: FMA:68868 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1700 +is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord +relationship: part_of UBERON:0002257 {source="https://github.com/obophenotype/uberon/issues/1277"} ! ventral horn of spinal cord + +[Term] +id: UBERON:0016579 +name: lamina VIII of gray matter of spinal cord +synonym: "lamina 8" RELATED LATIN [NeuroNames:1701] +synonym: "lamina spinalis" RELATED LATIN [NeuroNames:1701] +synonym: "lamina VIII" RELATED [NeuroNames:1701] +synonym: "rexed lamina VIII" EXACT [FMA:68869] +synonym: "Rexed's lamina VIII" RELATED [NeuroNames:1701] +synonym: "spinal lamina VIII" EXACT [FMA:68869] +xref: FMA:68869 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1701 +is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord +relationship: part_of UBERON:0034771 {source="https://github.com/obophenotype/uberon/issues/1277"} ! ventral commissural nucleus of spinal cord + +[Term] +id: UBERON:0016580 +name: lamina IX of gray matter of spinal cord +synonym: "rexed lamina IX" EXACT [FMA:68870] +synonym: "spinal lamina IX" EXACT [FMA:68870] +xref: FMA:68870 +is_a: UBERON:0016570 {source="FMA"} ! lamina of gray matter of spinal cord +relationship: part_of UBERON:0002257 ! ventral horn of spinal cord + +[Term] +id: UBERON:0016593 +name: obsolete rexed lamina xi +comment: Rexed lamina system typically extends to X +is_obsolete: true +consider: FMA:68872 + +[Term] +id: UBERON:0016594 +name: obsolete rexed lamina xii +comment: Rexed lamina system typically extends to X +is_obsolete: true +consider: FMA:68873 + +[Term] +id: UBERON:0016610 +name: nucleus proprius of spinal cord +def: "The Nucleus proprius is a layer of the spinal cord adjacent to the substantia gelatinosa. Nucleus proprius constitutes the bulk of the dorsal horn and receives inputs from the dorsal root ganglions that carry sensory information, such as light touch, as well as pain and temperature information. Cells in this nucleus project to deeper laminae of the spinal cord, to the posterior column nuclei, and to other supraspinal relay centers including the midbrain, thalamus, and hypothalamus. Rexed laminae III, IV, and V make up the nucleus propius Nucleus proprius (NP), along with nucleus dorsalis (ND) are involved in sensing fine touch and proprioception." [http://en.wikipedia.org/wiki/Nucleus_proprius_of_spinal_cord] +synonym: "nucleus proprius" RELATED [NeuroNames:1633] +synonym: "nucleus proprius" RELATED [http://en.wikipedia.org/wiki/Nucleus_proprius_of_spinal_cord] +synonym: "nucleus proprius columnae posterioris" RELATED LATIN [NeuroNames:1633] +synonym: "nucleus proprius cornu dorsalis" RELATED LATIN [NeuroNames:1633] +synonym: "nucleus proprius dorsalis" RELATED LATIN [NeuroNames:1633] +synonym: "nucleus proprius medullae spinalis" EXACT LATIN [FMA:73906, FMA:TA] +synonym: "nucleus proprius of the spinal cord" RELATED [NeuroNames:1633] +synonym: "proper sensory nucleus" EXACT [FMA:73906] +synonym: "proper sensory nucleus" RELATED [NeuroNames:1633] +xref: FMA:73906 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1633 +xref: http://en.wikipedia.org/wiki/Nucleus_proprius_of_spinal_cord +is_a: UBERON:0002315 ! gray matter of spinal cord +relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord + +[Term] +id: UBERON:0016611 +name: auditory hillocks, pharyngeal arch 1 derived +def: "A collection of protruberances derived from pharyngeal arch 1 that develop into the tragus, crus of the helix, and helix." [http://php.med.unsw.edu.au/embryology/index.php?title=Hearing_-_Outer_Ear_Development#Pinna-_Auricle] +is_a: UBERON:0000477 ! anatomical cluster +intersection_of: UBERON:0000477 ! anatomical cluster +intersection_of: develops_from UBERON:0004362 ! pharyngeal arch 1 +intersection_of: part_of UBERON:0006208 ! auditory hillocks +relationship: develops_from UBERON:0004362 ! pharyngeal arch 1 +relationship: part_of UBERON:0006208 ! auditory hillocks + +[Term] +id: UBERON:0016612 +name: auditory hillocks, pharyngeal arch 2 derived +def: "A collection of protruberances derived from pharyngeal arch 2 that develop into the concha, antihelix and antitragus." [http://php.med.unsw.edu.au/embryology/index.php?title=Hearing_-_Outer_Ear_Development#Pinna-_Auricle] +is_a: UBERON:0000477 ! anatomical cluster +intersection_of: UBERON:0000477 ! anatomical cluster +intersection_of: develops_from UBERON:0003066 ! pharyngeal arch 2 +intersection_of: part_of UBERON:0006208 ! auditory hillocks +relationship: develops_from UBERON:0003066 ! pharyngeal arch 2 +relationship: part_of UBERON:0006208 ! auditory hillocks + +[Term] +id: UBERON:0016618 +name: baleen feeding system +def: "." [http://en.wikipedia.org/wiki/Aquatic_predation#Lunge_feeding] +is_a: UBERON:0011216 ! organ system subdivision +relationship: part_of UBERON:0001007 ! digestive system + +[Term] +id: UBERON:0016619 +name: Y-shaped fibrocartilage skeleton of ventral pouch +def: "A Y-shaped fibrocartilage structure that lies in the substance of the muscular ventral pouch of rorqual whales." [http://www.ncbi.nlm.nih.gov/pubmed/845966] +synonym: "YSFS" EXACT ABBREVIATION [] +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0013765 ! digestive system element +relationship: part_of UBERON:0016618 ! baleen feeding system + +[Term] +id: UBERON:0016620 +name: ventral throat pleat +synonym: "ventral groove blubber" RELATED [] +synonym: "VGB" RELATED ABBREVIATION [] +is_a: UBERON:0006846 ! surface groove +relationship: part_of UBERON:0016618 ! baleen feeding system + +[Term] +id: UBERON:0016621 +name: lunge feeding organ +def: "A fibrous capsule located between the jaws of rorqual whales that contains a gelatinous substance and papillae bearing mechanorecaptors." [http://www.ncbi.nlm.nih.gov/pubmed/22622577] +is_a: UBERON:0000020 ! sense organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0013765 ! digestive system element +relationship: has_part UBERON:0016630 ! neurovascular bundle +relationship: part_of UBERON:0006606 ! mandibular symphysis +relationship: part_of UBERON:0016618 ! baleen feeding system + +[Term] +id: UBERON:0016622 +name: lunge feeding organ papilla +def: "." [http://www.ncbi.nlm.nih.gov/pubmed/22622577] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:2001995 ! papilla +intersection_of: UBERON:2001995 ! papilla +intersection_of: part_of UBERON:0016621 ! lunge feeding organ +relationship: part_of UBERON:0016621 ! lunge feeding organ + +[Term] +id: UBERON:0016624 +name: lunge feeding vibrissa +def: "A vibrissa on the lower jaw of rorqual whales that is hypothesized to form part of the lung feeding system." [http://www.ncbi.nlm.nih.gov/pubmed/22622577] +is_a: UBERON:0011933 ! vibrissa unit +relationship: part_of UBERON:0001710 ! lower jaw region +relationship: part_of UBERON:0016618 ! baleen feeding system + +[Term] +id: UBERON:0016628 +name: stem of Y-shaped fibrocartilage skeleton of ventral pouch +synonym: "YSF stem" EXACT [] +is_a: UBERON:0010912 ! subdivision of skeleton +relationship: part_of UBERON:0016619 ! Y-shaped fibrocartilage skeleton of ventral pouch + +[Term] +id: UBERON:0016629 +name: branch of Y-shaped fibrocartilage skeleton of ventral pouch +synonym: "YSF branch" EXACT [] +is_a: UBERON:0010912 ! subdivision of skeleton +is_a: UBERON:0015212 ! lateral structure +relationship: in_lateral_side_of UBERON:0016619 ! Y-shaped fibrocartilage skeleton of ventral pouch +relationship: part_of UBERON:0016619 ! Y-shaped fibrocartilage skeleton of ventral pouch + +[Term] +id: UBERON:0016630 +name: neurovascular bundle +def: "A body structure consisting of nerves traveling together with arteries, veins, and/or lymphatics." [ncithesaurus:Neurovascular_Bundle] +xref: FMA:32419 +xref: http://linkedlifedata.com/resource/umls/id/C0824497 +xref: NCIT:C74603 +is_a: UBERON:0034921 ! multi organ part structure +relationship: has_part UBERON:0001021 ! nerve +relationship: has_part UBERON:0002049 ! vasculature + +[Term] +id: UBERON:0016631 +name: actinopterygian frontal-parietal joint +def: "Fibrous joint connecting the actinopterygian frontal bone to the actinopterygian parietal bone." [ZFA:0005608, ZFIN:ZDB-PUB-060323-12] +synonym: "coronal suture" RELATED [ZFA:0005608] +synonym: "frontal-parietal joint" RELATED SENSU [ZFA:0005608] +xref: TAO:0005255 +xref: ZFA:0005608 +is_a: UBERON:0003685 ! cranial suture +intersection_of: UBERON:0003685 ! cranial suture +intersection_of: connects UBERON:0004865 ! actinopterygian parietal bone +intersection_of: connects UBERON:0004866 ! actinopterygian frontal bone +relationship: connects UBERON:0004865 ! actinopterygian parietal bone +relationship: connects UBERON:0004866 ! actinopterygian frontal bone + +[Term] +id: UBERON:0016632 +name: isthmus of fallopian tube +synonym: "isthmus of oviduct" RELATED [FMA:18306] +synonym: "isthmus of uterine tube" RELATED [FMA:18306] +synonym: "isthmus tubae uterinae" EXACT LATIN [FMA:18306, FMA:TA] +synonym: "uterine tube isthmus" RELATED [FMA:18306] +xref: FMA:18306 +is_a: UBERON:0003889 ! fallopian tube + +[Term] +id: UBERON:0016633 +name: parvocellular reticular nucleus +def: "The parvocellular reticular nucleus is part of the brain located dorsolateral to the nucleus reticularis pontis caudalis. The dorsal portion of the reticular nucleus has been shown to innervate the mesencephalic trigeminal nucleus and its surrounding area. Also, it projects to the facial nucleus, hypoglossal nucleus and parabrachial nucleus along with parts of the caudal parvocellular reticular formation. This nucleus is also involved in expiration with a part of the gigantocellular nucleus." [http://en.wikipedia.org/wiki/Parvocellular_reticular_nucleus] +synonym: "nucleus parvocellularis" RELATED LATIN [NeuroNames:728] +synonym: "nucleus reticularis parvicellularis" RELATED LATIN [NeuroNames:728] +synonym: "nucleus reticularis parvocellaris" RELATED [http://en.wikipedia.org/wiki/Parvocellular_reticular_nucleus] +synonym: "nucleus reticularis parvocellularis" EXACT [FMA:TA] +synonym: "nucleus reticularis parvocellularis" RELATED LATIN [NeuroNames:728] +synonym: "parvicellular reticular nucleus" EXACT [FMA:72575] +synonym: "parvicellular reticular nucleus" RELATED [NeuroNames:728] +synonym: "parvocellular nucleus" RELATED [http://en.wikipedia.org/wiki/Parvocellular_reticular_nucleus] +synonym: "parvocellular reticular nucleus" EXACT [FMA:72575] +synonym: "parvocellular reticular nucleus" RELATED [NeuroNames:728] +xref: DHBA:12618 +xref: FMA:72575 +xref: HBA:9624 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=728 +xref: http://en.wikipedia.org/wiki/Parvocellular_reticular_nucleus +xref: MBA:852 +is_a: UBERON:0002154 ! lateral reticular nucleus + +[Term] +id: UBERON:0016634 +name: premotor cortex +def: "The premotor cortex is an area of motor cortex lying within the frontal lobe of the brain. It extends 3 mm anterior to the primary motor cortex, near the Sylvian fissure, before narrowing to approximately 1 mm near the medial longitudinal fissure, which serves as the posterior border for the prefrontal cortex. The premotor cortex is largely equivalent to Brodmann area 6. Activity within this region is critical to the sensory guidance of movement and control of proximal and trunk muscles of the body." [http://en.wikipedia.org/wiki/Premotor_cortex] +synonym: "intermediate precentral cortex" RELATED [NeuroNames:2331] +synonym: "nonprimary motor cortex" RELATED [NeuroNames:2331] +synonym: "premotor" RELATED [http://en.wikipedia.org/wiki/Premotor_cortex] +synonym: "premotor area" RELATED [NeuroNames:2331] +synonym: "premotor cortex" RELATED [NeuroNames:2331] +synonym: "premotor cortex (area 6)" EXACT [DHBA:10168] +synonym: "premotor region" RELATED [http://en.wikipedia.org/wiki/Premotor_cortex] +synonym: "promotor cortex" RELATED [NeuroNames:2331] +synonym: "secondary motor areas" RELATED [NeuroNames:2331] +synonym: "secondary motor cortex" RELATED [NeuroNames:2331] +synonym: "secondary somatomotor areas" RELATED [NeuroNames:2331] +xref: DHBA:10168 +xref: FMA:224852 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2331 +xref: http://www.snomedbrowser.com/Codes/Details/90928005 +xref: MBA:993 +xref: Premotor:cortex +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000956 ! cerebral cortex + +[Term] +id: UBERON:0016635 +name: paragigantocellular nucleus +xref: DHBA:12626 +xref: MBA:938 +is_a: UBERON:0007635 {source="FMA"} ! nucleus of medulla oblongata + +[Term] +id: UBERON:0016636 +name: supplemental motor cortex +def: "The supplementary motor area (SMA) is a part of the sensorimotor cerebral cortex (perirolandic, i.e. on each side of the Rolando or central sulcus). It was included, on purely cytoarchitectonic arguments, in area 6 of Brodmann and the Vogts. It is located on the medial face of the hemisphere, just in front of primary motor cortex. This is an element that appeared late in evolution, in monkeys, linked to the appearance of a true medial pallidum." [http://en.wikipedia.org/wiki/Supplementary_motor_area] +subset: pheno_slim +synonym: "area F3" RELATED [NeuroNames:3176] +synonym: "jPL (SMC)" BROAD ABBREVIATION [FMA:224858, FMA:CMA] +synonym: "juxtapositional lobule cortex" RELATED [FMA:224858] +synonym: "SMA proper" RELATED [NeuroNames:3176] +synonym: "supplementary motor area" RELATED [NeuroNames:3176] +synonym: "supplementary motor area" RELATED [http://en.wikipedia.org/wiki/Supplementary_motor_area] +synonym: "supplementary motor area (M II)" RELATED [NeuroNames:3176] +synonym: "supplementary motor cortex" RELATED [NeuroNames:3176] +xref: FMA:224858 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3176 +xref: http://en.wikipedia.org/wiki/Supplementary_motor_area +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000956 ! cerebral cortex + +[Term] +id: UBERON:0016637 +name: lateral periolivary nucleus +def: "Lateral component of the periolivary nucleus" [http://medical-dictionary.thefreedictionary.com/periolivary+nuclei] +xref: DHBA:12465 +xref: FMA:226217 +is_a: UBERON:0002971 {source="cjm"} ! periolivary nucleus + +[Term] +id: UBERON:0016641 +name: subparafascicular nucleus +def: "The term subparafascicular nucleus refers to a cell group located ventral to the parafascicular nucleus in the thalamus. Identified by internal structure, it is present in the human ( Mai-1997 ), the macaque ( Paxinos-2009a ), the rat ( Swanson-1998 ), and the mouse ( Hof-2000 )." [NeuroNames:2253] +synonym: "nucleus subparafascicularis thalami" RELATED LATIN [NeuroNames:2253] +synonym: "subparafascicular nucleus" RELATED [NeuroNames:2253] +synonym: "subparafascicular nucleus of the thalamus" RELATED [NeuroNames:2253] +synonym: "subparafascicular nucleus thalamus" RELATED [NeuroNames:2253] +synonym: "subparafascicular thalamic nucleus" RELATED [NeuroNames:2253] +xref: DHBA:13054 +xref: FMA:226239 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2253 +xref: MBA:406 +is_a: UBERON:0006569 ! diencephalic nucleus +relationship: part_of UBERON:0010225 ! thalamic complex + +[Term] +id: UBERON:0016824 +name: lateral paragigantocellular nucleus +synonym: "lateral paragigantocellular nucleus" RELATED [NeuroNames:731] +synonym: "lateral paragigantocellular reticular nucleus" EXACT [FMA:72577] +synonym: "nucleus paragigantocellularis lateralis" RELATED LATIN [NeuroNames:731] +synonym: "paragigantocellular nucleus, lateral part" EXACT [FMA:72577] +synonym: "paragigantocellular nucleus, lateral part" RELATED [NeuroNames:731] +synonym: "paragigantocellular reticular nucleus, lateral part" RELATED [NeuroNames:731] +xref: DHBA:12629 +xref: FMA:72577 +xref: HBA:9601 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=731 +xref: MBA:978 +xref: NLX:143582 +is_a: UBERON:0016635 ! paragigantocellular nucleus + +[Term] +id: UBERON:0016825 +name: dorsal paragigantocellular nucleus +synonym: "dorsal paragigantocellular nucleus" RELATED [NeuroNames:732] +synonym: "dorsal paragigantocellular reticular nucleus" EXACT [FMA:72578] +synonym: "nucleus paragigantocellularis dorsalis" RELATED LATIN [NeuroNames:732] +synonym: "paragigantocellular nucleus, dorsal part" EXACT [FMA:72578] +synonym: "paragigantocellular nucleus, dorsal part" RELATED [NeuroNames:732] +synonym: "paragigantocellular reticular nucleus, dorsal part" RELATED [NeuroNames:732] +synonym: "posterior paragigantocellular reticular nucleus" EXACT [FMA:72578] +xref: DHBA:12628 +xref: FMA:72578 +xref: HBA:9600 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=732 +xref: MBA:970 +is_a: UBERON:0016635 ! paragigantocellular nucleus + +[Term] +id: UBERON:0016826 +name: paramedian medullary reticular complex +synonym: "nuclei paramedianes myelencephali" RELATED LATIN [NeuroNames:734] +synonym: "paramedial reticular nuclei" RELATED [NeuroNames:734] +synonym: "paramedian group (medullary reticular formation)" EXACT [FMA:72580] +synonym: "paramedian group (medullary reticular formation)" RELATED [NeuroNames:734] +synonym: "paramedian medullary reticular group" EXACT [FMA:72580] +synonym: "paramedian medullary reticular group" RELATED [NeuroNames:734] +xref: FMA:72580 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=734 +is_a: UBERON:0007245 {source="FMA"} ! nuclear complex of neuraxis +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: part_of UBERON:0002559 {source="FMA"} ! medullary reticular formation + +[Term] +id: UBERON:0016827 +name: dorsal paramedian reticular nucleus +def: "Small nucleus in the brainstem of human, located adjacent and medial to the nucleus prepositus in the dorsal medulla, described in several atlases of human brain stem. In transverse sections, it is oval with its long axis aligned with the dorsal border of the brainstem. It begins at about the same A-P level as the nucleus prepositus, just rostral to the hypoglossal nucleus. It includes calretinin immunoreactive large cells with oval or polygonal cell bodies. Cells are not immunoreactive for either calbindin or parvalbumin, but a few fibers immunoreactive to each protein are found within its central region. Cells in PMD are also immunoreactive to nNOS, and immunoreactivity to a neurofilament protein shows many labeled cells and fibers. According to Baizer et al., no equivalent structure was observed in the cat, rat, mouse or monkey atlas although they did not look at the brains of the great apes." [NLX:143549] +synonym: "dorsal paramedian nuclei of raphe" EXACT [FMA:72581] +synonym: "dorsal paramedian nucleus" EXACT [FMA:72581] +synonym: "dorsal paramedian reticular nucleus" RELATED [NeuroNames:735] +synonym: "nucleo paramediano dorsale@it" RELATED [NeuroNames:735] +synonym: "nucleus paramedianus dorsalis" RELATED LATIN [NeuroNames:735] +synonym: "nucleus paramedianus posterior" RELATED LATIN [NeuroNames:735] +synonym: "nucleus reticularis paramedianus myelencephali" RELATED LATIN [NeuroNames:735] +synonym: "nzcleo reticular paramediano dorsal@es" RELATED [NeuroNames:735] +synonym: "posterior paramedian nucleus" EXACT [FMA:72581] +xref: DHBA:12597 +xref: FMA:72581 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=735 +xref: NLX:143549 +is_a: UBERON:0007635 {source="FMA"} ! nucleus of medulla oblongata +relationship: part_of UBERON:0016826 ! paramedian medullary reticular complex + +[Term] +id: UBERON:0016832 +name: paratrigeminal nucleus +def: "The term paratrigeminal nucleus refers to a group of cells located lateral to the spinal trigeminal tract of the medulla and medial to the spinocerebellar tracts at the level of the spinal trigeminal nucleus. The cells, identified by Nissl stain, are partially embedded in the adjacent tracts; their distribution varies by species. The paratrigeminal nucleus may represent an extension of the lateral cervical nucleus into the medulla ( Swanson-2004 ). It is found in the human ( Carpenter-1983 ), the macaque ( Paxinos-2009a ), the rat ( Swanson-2004 ) and the mouse ( Paxinos-2001 ). In the functional model of central nervous system organization it is classified as part of the subcortical somatosensory system ( Swanson-2004 )" [NeuroNames:761] +synonym: "lateral cervical nucleus, trigeminal extension" RELATED [NeuroNames:761] +synonym: "nucleus paratrigeminalis" RELATED LATIN [NeuroNames:761] +synonym: "paratrigeminal nucleus" RELATED [NeuroNames:761] +xref: BAMS:PAT +xref: DHBA:12656 +xref: FMA:72599 +xref: HBA:9630 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=761 +is_a: UBERON:0007635 {source="FMA"} ! nucleus of medulla oblongata + +[Term] +id: UBERON:0016843 +name: lateral nucleus of trapezoid body +def: "One of two potential parts of the trapezoid nucleus. Separated by an indistinct boundary, the other is the medial trapezoid nucleus ( Crosby-1962 ). The existence of the trapezoid nucleus in the human is disputed ( Bazwinsky-2003 )" [NeuroNames:2852] +synonym: "lateral nucleus of the trapezoid body" RELATED [NeuroNames:2852] +synonym: "lateral trapezoid nucleus" RELATED [NeuroNames:2852] +synonym: "LNTB" EXACT ABBREVIATION [] +xref: DHBA:12459 +xref: DMBA:17274 +xref: FMA:75730 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2852 +is_a: UBERON:0007247 ! nucleus of superior olivary complex +relationship: part_of UBERON:0002932 {notes="to be verified"} ! trapezoid body +relationship: ventral_to UBERON:0002779 ! lateral superior olivary nucleus + +[Term] +id: UBERON:0016848 +name: retroambiguus nucleus +def: "The term retroambiguus nucleus refers to a group of neurons in the medulla at the caudal end of the nucleus ambiguus, from which the cranial part of the accessory nerve originates ( Crosby-1962 )." [NeuroNames:2319] +synonym: "nucleus retroambigualis" RELATED [NeuroNames:2319] +synonym: "nucleus retroambigualis" RELATED LATIN [NeuroNames:2319] +synonym: "nucleus retroambiguus" EXACT LATIN [FMA:77096, FMA:TA] +synonym: "retroambiguus nucleus" RELATED [NeuroNames:2319] +xref: FMA:77096 +xref: HBA:9650 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2319 +is_a: UBERON:0007635 {source="FMA"} ! nucleus of medulla oblongata + +[Term] +id: UBERON:0016849 +name: obsolete subparabrachial nucleus +def: "A cell group located ventral to the brachium conjunctivum in the general area where the medial and lateral parabrachial nuclei abut, shifting to the slightly more lateral position rostrally." [http://www.medilexicon.com/medicaldictionary.php?t=61742] +is_obsolete: true +replaced_by: UBERON:0002869 + +[Term] +id: UBERON:0016850 +name: nucleus of phrenic nerve +def: "neuron cell bodies located in the more medial portions of the anterior horn at cervical levels C3-C7 that innervate the diaphragm via the phrenic nerve." [http://medical-dictionary.thefreedictionary.com/nucleus+of+phrenic+nerve] +synonym: "nucleus nervi phrenici" RELATED LATIN [NeuroNames:2004] +synonym: "nucleus of phrenic nerve" RELATED [NeuroNames:2004] +synonym: "nucleus of the phrenic nerve" RELATED [NeuroNames:2004] +synonym: "nucleus phrenicus columnae anterioris medullae spinalis" RELATED LATIN [NeuroNames:2004] +synonym: "phrenic neural nucleus" EXACT [FMA:77458] +synonym: "phrenic nucleus" EXACT [FMA:77458] +synonym: "phrenic nucleus of anterior column of spinal cord" RELATED [NeuroNames:2004] +xref: FMA:77458 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2004 +is_a: UBERON:0011777 {source="FMA"} ! nucleus of spinal cord + +[Term] +id: UBERON:0016851 +name: renal fascia +def: "A fascial pouch derived from extraperitoneal connective tissue that contains the kidneys, the suprarenal glands, the renal vessels and perirenal fat" [http://anatomy.uams.edu/anatomyhtml/kidney.html] +synonym: "fascia of Zuckerkandl" EXACT [FMA:18104] +synonym: "fascia renalis" RELATED [http://en.wikipedia.org/wiki/Renal_fascia] +synonym: "Gerota capsule" RELATED [http://en.wikipedia.org/wiki/Renal_fascia] +synonym: "gerota's capsule" EXACT [FMA:18104] +synonym: "gerota's fascia" EXACT [FMA:18104] +xref: FMA:18104 +xref: Renal:fascia +is_a: UBERON:0013493 ! abdominal fascia +relationship: surrounds UBERON:0002113 ! kidney + +[Term] +id: UBERON:0016852 +name: skin scent gland +def: "A scent gland that is part of the skin" [http://orcid.org/0000-0002-6601-2165] +synonym: "cutaneous scent gland" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/67740006 +is_a: UBERON:0002419 ! skin gland +is_a: UBERON:0011252 ! scent gland +is_a: UBERON:0019319 ! exocrine gland of integumental system +intersection_of: UBERON:0011252 ! scent gland +intersection_of: part_of UBERON:0002097 ! skin of body + +[Term] +id: UBERON:0016853 +name: interdigital gland +def: "A skin gland found in the interdigital region of some mammals" [http://orcid.org/0000-0002-6601-2165] +synonym: "interdigital sinus" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/20512761] +xref: http://www.snomedbrowser.com/Codes/Details/441008 +is_a: UBERON:0016852 ! skin scent gland +intersection_of: UBERON:0016852 ! skin scent gland +intersection_of: part_of UBERON:0012140 ! digitopodium region +relationship: part_of UBERON:0012140 ! digitopodium region + +[Term] +id: UBERON:0016854 +name: dorsal part of optic cup +def: "The dorsal region of the optic cup that gives rise to the dorsal part of the retina." [http://orcid.org/0000-0002-6601-2165] +synonym: "dorsal optic cup" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "dorsal region of optic cup" EXACT [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000481 ! multi-tissue structure +intersection_of: in_dorsal_side_of UBERON:0003072 ! optic cup +relationship: in_dorsal_side_of UBERON:0003072 ! optic cup +relationship: part_of UBERON:0003072 ! optic cup + +[Term] +id: UBERON:0016855 +name: ventral part of optic cup +def: "The ventral region of the optic cup that gives rise to the ventral part of the retina." [http://orcid.org/0000-0002-6601-2165] +comment: optic fissure, hyaloid artery, pecten +synonym: "ventral optic cup" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "ventral region of optic cup" EXACT [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000481 ! multi-tissue structure +intersection_of: in_ventral_side_of UBERON:0003072 ! optic cup +relationship: in_ventral_side_of UBERON:0003072 ! optic cup +relationship: part_of UBERON:0003072 ! optic cup + +[Term] +id: UBERON:0016856 +name: digit 6 +def: "A digit that is part of a digit 6 plus metapodial segment." [OBOL:automatic] +synonym: "autopod digit 6" EXACT [] +synonym: "digit VI" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "limb digit 6" EXACT [] +synonym: "sixth digit" EXACT [] +is_a: UBERON:0002544 ! digit +intersection_of: UBERON:0002544 ! digit +intersection_of: part_of UBERON:0016866 ! digit 6 plus metapodial segment +relationship: part_of UBERON:0016866 ! digit 6 plus metapodial segment + +[Term] +id: UBERON:0016857 +name: digit 7 +def: "A digit that is part of a digit 7 plus metapodial segment." [OBOL:automatic] +synonym: "autopod digit 7" EXACT [] +synonym: "digit VII" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "limb digit 7" EXACT [] +synonym: "seventh digit" EXACT [] +is_a: UBERON:0002544 ! digit +intersection_of: UBERON:0002544 ! digit +intersection_of: part_of UBERON:0016867 ! digit 7 plus metapodial segment +relationship: part_of UBERON:0016867 ! digit 7 plus metapodial segment + +[Term] +id: UBERON:0016858 +name: digit 8 +def: "A digit that is part of a digit 8 plus metapodial segment." [OBOL:automatic] +synonym: "autopod digit 8" EXACT [] +synonym: "digit VIII" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +synonym: "eighth digit" EXACT [] +synonym: "limb digit 8" EXACT [] +is_a: UBERON:0002544 ! digit +intersection_of: UBERON:0002544 ! digit +intersection_of: part_of UBERON:0016868 ! digit 8 plus metapodial segment +relationship: part_of UBERON:0016868 ! digit 8 plus metapodial segment + +[Term] +id: UBERON:0016866 +name: digit 6 plus metapodial segment +def: "A subdivision of the autopod consisting of digit 6 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 6" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 6 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 6 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 6 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "digit VI plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5002544 ! digit plus metapodial segment +intersection_of: UBERON:5002544 ! digit plus metapodial segment +intersection_of: has_part UBERON:0016856 ! digit 6 +relationship: has_part UBERON:0016856 ! digit 6 + +[Term] +id: UBERON:0016867 +name: digit 7 plus metapodial segment +def: "A subdivision of the autopod consisting of digit 7 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 7" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 7 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 7 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 7 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "digit VII plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5002544 ! digit plus metapodial segment +intersection_of: UBERON:5002544 ! digit plus metapodial segment +intersection_of: has_part UBERON:0016857 ! digit 7 +relationship: has_part UBERON:0016857 ! digit 7 + +[Term] +id: UBERON:0016868 +name: digit 8 plus metapodial segment +def: "A subdivision of the autopod consisting of digit 8 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 8" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 8 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 8 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 8 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "digit VIII plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5002544 ! digit plus metapodial segment +intersection_of: UBERON:5002544 ! digit plus metapodial segment +intersection_of: has_part UBERON:0016858 ! digit 8 +relationship: has_part UBERON:0016858 ! digit 8 + +[Term] +id: UBERON:0016876 +name: digit 6 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 6 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 6" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 6 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit VI digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5102544 ! individual digit of digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0016866 ! digit 6 plus metapodial segment +relationship: part_of UBERON:0016866 ! digit 6 plus metapodial segment +relationship: skeleton_of UBERON:0016866 ! digit 6 plus metapodial segment + +[Term] +id: UBERON:0016877 +name: digit 7 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 7 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 7" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 7 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit VII digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5102544 ! individual digit of digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0016867 ! digit 7 plus metapodial segment +relationship: part_of UBERON:0016867 ! digit 7 plus metapodial segment +relationship: skeleton_of UBERON:0016867 ! digit 7 plus metapodial segment + +[Term] +id: UBERON:0016878 +name: digit 8 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 8 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 8" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 8 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit VIII digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5102544 ! individual digit of digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0016868 ! digit 8 plus metapodial segment +relationship: part_of UBERON:0016868 ! digit 8 plus metapodial segment +relationship: skeleton_of UBERON:0016868 ! digit 8 plus metapodial segment + +[Term] +id: UBERON:0016879 +name: future central nervous system +alt_id: UBERON:3000469 +def: "Primordium that develops into the central nervous system" [http://orcid.org/0000-0002-6601-2165] +synonym: "future CNS" EXACT [] +synonym: "presumptive central nervous system" EXACT [] +is_a: UBERON:0006598 ! presumptive structure +intersection_of: UBERON:0006598 ! presumptive structure +intersection_of: has_potential_to_develop_into UBERON:0001017 ! central nervous system +relationship: develops_from UBERON:0000924 ! ectoderm +relationship: has_potential_to_develop_into UBERON:0001017 ! central nervous system +relationship: part_of UBERON:0016880 ! future nervous system + +[Term] +id: UBERON:0016880 +name: future nervous system +alt_id: UBERON:3000477 +def: "Primordium that develops into the nervous system" [http://orcid.org/0000-0002-6601-2165] +synonym: "presumptive nervous system" EXACT [AAO:0000477] +xref: AAO:0000477 +is_a: UBERON:0006598 ! presumptive structure +intersection_of: UBERON:0006598 ! presumptive structure +intersection_of: has_potential_to_develop_into UBERON:0001016 ! nervous system +relationship: existence_starts_during_or_after UBERON:0000111 ! organogenesis stage +relationship: has_potential_to_develop_into UBERON:0001016 ! nervous system + +[Term] +id: UBERON:0016881 +name: craniopharyngeal canal +def: "The craniopharyngeal canal, is an anatomical feature sometimes found in the sphenoid bone opening to the sella turcica. It is a canal (a passage or channel) sometimes found extending from the anterior part of the fossa hypophyseos of the sphenoid bone to the under surface of the skull, and marks the original position of Rathke's pouch; while at the junction of the septum of the nose with the palate traces of the stomodeal end are occasionally present." [http://en.wikipedia.org/wiki/Craniopharyngeal_canal] +synonym: "bucconeural duct" RELATED [] +synonym: "craniopharyngeal duct" RELATED [http://en.wikipedia.org/wiki/Craniopharyngeal_canal] +xref: CALOHA:TS-2347 +xref: Craniopharyngeal:canal +xref: EMAPA:19194 +xref: http://linkedlifedata.com/resource/umls/id/C0229549 +xref: http://www.snomedbrowser.com/Codes/Details/264453001 +xref: NCIT:C12357 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0013685 ! foramen of skull +relationship: continuous_with UBERON:0003689 ! sella turcica +relationship: part_of UBERON:0001677 ! sphenoid bone + +[Term] +id: UBERON:0016882 +name: intertarsal-type crurotarsal joint +def: "An ankle joint that passes between the astragalus and calcaneum." [http://palaeos.com/vertebrates/glossary/glossaryCr.html#Crurotarsal%20joint] +synonym: "crurotarsal joint" RELATED [ISBN:0073040584] +synonym: "intertarsal joint" RELATED [ISBN:0073040584] +is_a: UBERON:0001488 {source="UBERON"} ! ankle joint + +[Term] +id: UBERON:0016883 +name: ovarian fossa +def: "A shallow depression on the lateral wall of the pelvis, wherein the ovary lies. This fossa has the following boundaries: superiorly: by the external iliac vessels anteriorly and inferiorly: by the broad ligament of the uterus posteriorly: by the ureter and internal iliac vessels" [http://en.wikipedia.org/wiki/Ovarian_fossa, MGI:anna] +subset: pheno_slim +synonym: "Claudius fossa" EXACT [MGI:anna] +synonym: "fossa ovarica" EXACT LATIN [http://en.wikipedia.org/wiki/Ovarian_fossa] +xref: FMA:21030 +xref: Ovarian:fossa +is_a: UBERON:0000464 ! anatomical space +relationship: contains UBERON:0000992 ! ovary +relationship: part_of UBERON:0002355 ! pelvic region of trunk +relationship: part_of UBERON:0005449 ! greater sac + +[Term] +id: UBERON:0016884 +name: shoulder joint +def: "The joint that is formed by the union of the humerus, the scapula (or shoulder blade), and the clavicle (or collarbone). Commonly thought of as a single joint, the shoulder is actually made up of two separate joints - the glenohumeral and acromioclavicular joints" [http://www.innerbody.com/image/skel17.html] +synonym: "joint of shoulder region" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/361835002 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: part_of UBERON:0001467 ! shoulder +relationship: develops_from UBERON:0006292 {evidence="definitional"} ! shoulder joint primordium +relationship: part_of UBERON:0001467 ! shoulder + +[Term] +id: UBERON:0016885 +name: epithelium of terminal part of digestive tract +def: "Epithelium lining the distalmost portion of the digestive tract." [http://orcid.org/0000-0002-6601-2165] +synonym: "rectum epithelium" NARROW [BTO:0005445] +xref: BTO:0005445 +xref: WBbt:0005800 +is_a: UBERON:0003929 ! digestive tract epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0006866 ! terminal part of digestive tract +relationship: part_of UBERON:0006866 ! terminal part of digestive tract + +[Term] +id: UBERON:0016886 +name: muscle tissue of terminal part of digestive tract +def: "Any muscle tissue of the distalmost portion of the digestive tract." [http://orcid.org/0000-0002-6601-2165] +synonym: "rectum muscle" NARROW [] +synonym: "rectum muscle structure" NARROW [] +is_a: UBERON:0002385 ! muscle tissue +intersection_of: UBERON:0002385 ! muscle tissue +intersection_of: part_of UBERON:0006866 ! terminal part of digestive tract +relationship: part_of UBERON:0006866 ! terminal part of digestive tract + +[Term] +id: UBERON:0016887 +name: entire extraembryonic component +def: "The part of the conceptus that may be lost before birth or will be discarded at birth, or when the embryo becomes an independent organism." [AEO:0000195, AEO:JB] +synonym: "extra-embryonic component" EXACT [] +synonym: "extraembryonic component" EXACT [AEO:0000195] +xref: AEO:0000195 +xref: EHDAA2:0000003 +xref: EMAPA:16042 +is_a: UBERON:0000481 {source="AEO"} ! multi-tissue structure +relationship: adjacent_to UBERON:0002050 ! embryonic structure +relationship: existence_starts_and_ends_during UBERON:0000068 ! embryo stage +relationship: part_of UBERON:0004716 {source="AEO"} ! conceptus + +[Term] +id: UBERON:0016888 +name: transitional anatomical structure +def: "An embryonic anatomical entity that will turn into one or more other anatomical entities, perhaps with other anatomical entities, later in development." [AEO:0000132, AEO:JB] +xref: AEO:0000132 +is_a: UBERON:0005423 {source="AEO"} ! developing anatomical structure + +[Term] +id: UBERON:0016890 +name: intrahepatic branch of portal vein +synonym: "intrahepatic part of portal vein" EXACT [FMA:15417] +xref: FMA:15417 +xref: http://www.snomedbrowser.com/Codes/Details/304373004 +is_a: UBERON:0013126 ! vein of abdomen +is_a: UBERON:0015796 ! liver blood vessel + +[Term] +id: UBERON:0016896 +name: periosteum of long bone +def: "A periosteum that is part of a long bone." [OBOL:automatic] +synonym: "long bone periosteum" EXACT [FMA:32677] +xref: FMA:32677 +is_a: UBERON:0002515 ! periosteum +intersection_of: UBERON:0002515 ! periosteum +intersection_of: part_of UBERON:0002495 ! long bone +relationship: part_of UBERON:0002495 ! long bone + +[Term] +id: UBERON:0016910 +name: frenulum of lip +synonym: "frenulum labii" EXACT [] +synonym: "labial frenulum" EXACT [] +synonym: "lip frenulum" EXACT [FMA:59820] +synonym: "medial labial frenulum" RELATED [FMA:59820] +xref: FMA:59820 +xref: http://www.snomedbrowser.com/Codes/Details/264053009 +is_a: UBERON:0036293 ! oral frenulum +is_a: UBERON:0036294 ! mucosa of lip +intersection_of: UBERON:0036293 ! oral frenulum +intersection_of: part_of UBERON:0001833 ! lip +relationship: connects UBERON:0003679 ! mouth floor +relationship: connects UBERON:0036294 ! mucosa of lip + +[Term] +id: UBERON:0016912 +name: frenulum of upper lip +def: "A frenulum of lip that is part of a upper lip." [OBOL:automatic] +synonym: "f. labii superioris" EXACT LATIN [] +synonym: "frenulum labii superioris" EXACT LATIN [] +synonym: "upper lip frenulum" EXACT [FMA:59821] +xref: FMA:59821 +xref: http://www.snomedbrowser.com/Codes/Details/264488001 +is_a: UBERON:0005031 ! mucosa of upper lip +is_a: UBERON:0016910 ! frenulum of lip +intersection_of: UBERON:0016910 ! frenulum of lip +intersection_of: part_of UBERON:0001834 ! upper lip +relationship: connects UBERON:0005031 ! mucosa of upper lip + +[Term] +id: UBERON:0016913 +name: frenulum of lower lip +def: "A frenulum of lip that is part of a lower lip." [OBOL:automatic] +synonym: "f. labii inferioris" RELATED LATIN [http://en.wikipedia.org/wiki/Frenulum_of_lower_lip] +synonym: "frenulum labii inferioris" EXACT [] +synonym: "frenulum labii inferioris" RELATED LATIN [http://en.wikipedia.org/wiki/Frenulum_of_lower_lip] +synonym: "lower lip frenulum" EXACT [FMA:59822] +xref: FMA:59822 +xref: http://en.wikipedia.org/wiki/Frenulum_of_lower_lip +xref: http://www.snomedbrowser.com/Codes/Details/277191003 +is_a: UBERON:0005032 ! mucosa of lower lip +is_a: UBERON:0016910 ! frenulum of lip +intersection_of: UBERON:0016910 ! frenulum of lip +intersection_of: part_of UBERON:0001835 ! lower lip +relationship: connects UBERON:0005032 ! mucosa of lower lip + +[Term] +id: UBERON:0016914 +name: lamina lucida +synonym: "electron-lucent layer of basal lamina of connective tissue" EXACT [FMA:62921] +synonym: "lamina rara" EXACT [FMA:62921] +xref: FMA:62921 +xref: http://linkedlifedata.com/resource/umls/id/C1167355 +xref: NCIT:C32917 +is_a: UBERON:0005764 {source="FMA"} ! acellular membrane +relationship: part_of UBERON:0000482 {source="FMA"} ! basal lamina of epithelium + +[Term] +id: UBERON:0016915 +name: vermilion +def: "The zone of the skin that surrounds a lip and is colored red due to thin epithelium and presence of eleidin" [http://orcid.org/0000-0002-6601-2165] +synonym: "vermilion border" BROAD [] +synonym: "vermilion border of lip" EXACT [] +synonym: "vermilion of lip" EXACT [] +synonym: "vermillion" RELATED DUBIOUS [] +xref: FMA:59824 +xref: http://www.snomedbrowser.com/Codes/Details/362086008 +is_a: UBERON:0001084 ! skin of head +relationship: part_of UBERON:0000165 ! mouth +relationship: surrounds UBERON:0001833 ! lip + +[Term] +id: UBERON:0016918 +name: upper vermilion +def: "A vermilion that is part of a upper lip." [OBOL:automatic] +synonym: "vermilion border of upper lip" EXACT [] +synonym: "vermilion of upper lip" EXACT [FMA:59827] +xref: FMA:59827 +xref: http://www.snomedbrowser.com/Codes/Details/245799004 +is_a: UBERON:0016915 ! vermilion +is_a: UBERON:0018151 ! skin of upper lip +intersection_of: UBERON:0016915 ! vermilion +intersection_of: part_of UBERON:0001834 ! upper lip + +[Term] +id: UBERON:0016919 +name: lower vermilion +def: "A vermilion that is part of a lower lip." [OBOL:automatic] +synonym: "vermilion border of lower lip" EXACT [] +synonym: "vermilion of lower lip" EXACT [FMA:59828] +xref: FMA:59828 +xref: http://www.snomedbrowser.com/Codes/Details/245800000 +is_a: UBERON:0016915 ! vermilion +is_a: UBERON:0018150 ! skin of lower lip +intersection_of: UBERON:0016915 ! vermilion +intersection_of: part_of UBERON:0001835 ! lower lip + +[Term] +id: UBERON:0016920 +name: descending trunk of arch of aorta +synonym: "descending aortic arch" EXACT [HP:0012305] +synonym: "descending limb of arch of aorta" EXACT [FMA:13082] +synonym: "descending trunk of aortic arch" EXACT [FMA:13082] +xref: FMA:13082 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0013522 ! subdivision of tube +relationship: part_of UBERON:0001508 {source="FMA"} ! arch of aorta + +[Term] +id: UBERON:0016923 +name: preductal region of aortic arch +def: "Area of aorta proximal to the ductus arteriosus." [http://orcid.org/0000-0002-6601-2165] +synonym: "preligamental region of aortic arch" EXACT [FMA:3774] +xref: FMA:3774 +xref: http://www.snomedbrowser.com/Codes/Details/197773005 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0013522 ! subdivision of tube +relationship: part_of UBERON:0016920 {source="FMA"} ! descending trunk of arch of aorta + +[Term] +id: UBERON:0016924 +name: postductal region of aortic arch +def: "Area of aorta distal to the ductus arteriosus." [http://orcid.org/0000-0002-6601-2165] +synonym: "postligamental region of aortic arch" EXACT [FMA:3776] +xref: FMA:3776 +xref: http://www.snomedbrowser.com/Codes/Details/197852003 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0013522 ! subdivision of tube +relationship: part_of UBERON:0016920 {source="FMA"} ! descending trunk of arch of aorta + +[Term] +id: UBERON:0016925 +name: juxtaductal region of aortic arch +def: "Area of aorta at the area of insertion to the ductus arteriosus." [http://orcid.org/0000-0002-6601-2165] +synonym: "aortic isthmus" RELATED [] +synonym: "isthmus aorta" EXACT [FMA:3771] +synonym: "juxtaligamental region of aortic arch" EXACT [FMA:3778] +xref: FMA:3771 +xref: FMA:3778 +xref: http://www.snomedbrowser.com/Codes/Details/197677000 +xref: http://www.snomedbrowser.com/Codes/Details/197932000 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0013522 ! subdivision of tube +relationship: part_of UBERON:0016920 {source="FMA"} ! descending trunk of arch of aorta + +[Term] +id: UBERON:0016926 +name: mucus body coating +def: "A coating of mucus that is produced by the skin and covers all or most of the body of an animal." [http://orcid.org/0000-0002-6601-2165] +synonym: "mucous body coating" RELATED [] +xref: BTO:0005082 +is_a: UBERON:0010152 ! skin mucus +relationship: surrounds UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0016927 +name: mucus cocoon +def: "A mucous covering produced nocturnally by some fish that is used to envelope the whole animal." [http://www.ncbi.nlm.nih.gov/pubmed/21084337] +synonym: "mucous cocoon" RELATED [] +is_a: UBERON:0000912 ! mucus +relationship: surrounds UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0016928 +name: metaphysis of fibula +def: "A metaphysis that is part of a fibula." [UBERON:nv] +synonym: "fibula metaphysis" EXACT [FMA:33745] +synonym: "fibular metaphysis" EXACT [] +xref: FMA:33745 +is_a: UBERON:0001438 ! metaphysis +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001438 ! metaphysis +intersection_of: part_of UBERON:0001446 ! fibula +relationship: part_of UBERON:0001446 ! fibula + +[Term] +id: UBERON:0016929 +name: lingual cusp of tooth +alt_id: UBERONTEMP:0ea3066e-0c22-417b-8ac4-91c2aacba792 +def: "A medially (towards the tongue)) raised feature found on crown of a tooth." [PHENOSCAPE:alex] +synonym: "cuspis lingualis" EXACT LATIN [FMA:TA] +synonym: "lingual cusp" EXACT [FMA:56490] +xref: FMA:56490 +xref: http://www.snomedbrowser.com/Codes/Details/245720006 +xref: UBERONTEMP:0ea3066e-0c22-417b-8ac4-91c2aacba792 +is_a: UBERON:0006844 {source="FMA"} ! cusp of tooth + +[Term] +id: UBERON:0016930 +name: ridge of tooth +def: "A linear flat evelation on a tooth." [http://en.wikipedia.org/wiki/Dental_anatomy#Ridges] +synonym: "crista of tooth" EXACT [] +synonym: "tooth ridge" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/245699009 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001091 ! calcareous tooth + +[Term] +id: UBERON:0016931 +name: transverse ridge of tooth +alt_id: UBERONTEMP:12cd474b-52d2-46e2-9a3d-2322edc3490b +def: "Triangular ridges facing each other and crossing at transverse angle, forming a transverse ridge on posterior teeth." [PHENOSCAPE:curators] +synonym: "crista transversalis (corona dentis)" EXACT [FMA:56658] +synonym: "crista transversalis dentis" EXACT LATIN [FMA:56658, FMA:TA] +synonym: "crista transversalis of tooth" EXACT [FMA:56658] +synonym: "transverse ridge of crown of tooth" EXACT [FMA:56658] +xref: FMA:56658 +is_a: UBERON:0016930 ! ridge of tooth + +[Term] +id: UBERON:0016932 +name: triangular ridge of tooth +synonym: "crista triangularis (corona dentis)" EXACT [FMA:56659] +synonym: "crista triangularis dentis" EXACT LATIN [FMA:56659, FMA:TA] +synonym: "crista triangularis of tooth" EXACT [FMA:56659] +synonym: "triangular ridge of crown of tooth" EXACT [FMA:56659] +xref: FMA:56659 +is_a: UBERON:0016930 ! ridge of tooth + +[Term] +id: UBERON:0016933 +name: oblique ridge of tooth +synonym: "crista obliqua (corona dentis)" EXACT [FMA:56660] +synonym: "crista obliqua dentis" EXACT LATIN [FMA:56660, FMA:TA] +synonym: "oblique ridge of crown of tooth" EXACT [FMA:56660] +xref: FMA:56660 +xref: http://www.snomedbrowser.com/Codes/Details/245701009 +is_a: UBERON:0016930 ! ridge of tooth + +[Term] +id: UBERON:0016934 +name: marginal ridge of tooth +synonym: "crista marginalis (dentis)" EXACT [FMA:56758] +synonym: "crista marginalis dentis" EXACT LATIN [FMA:56758, FMA:TA] +synonym: "crista marginalis of tooth" EXACT [FMA:56758] +xref: FMA:56758 +xref: http://www.snomedbrowser.com/Codes/Details/245700005 +is_a: UBERON:0016930 ! ridge of tooth + +[Term] +id: UBERON:0016937 +name: transverse marginal ridge of tooth +synonym: "transverse marginal ridge of tooth" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/245702002 +is_a: UBERON:0016934 ! marginal ridge of tooth + +[Term] +id: UBERON:0016938 +name: mesial marginal ridge of tooth +synonym: "mesial marginal ridge of tooth" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/278475009 +is_a: UBERON:0016934 ! marginal ridge of tooth + +[Term] +id: UBERON:0016939 +name: distal marginal ridge of tooth +synonym: "distal marginal ridge of tooth" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/278476005 +is_a: UBERON:0016934 ! marginal ridge of tooth + +[Term] +id: UBERON:0016942 +name: rostral margin of orbit +alt_id: BSPOTEMP:58938a8e-359c-49d8-b3f7-5e1fd7e1a109 +alt_id: http://purl.bioontology.org/ontology/provisional/58938a8e-359c-49d8-b3f7-5e1fd7e1a109 +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0001697 ! orbit of skull + +[Term] +id: UBERON:0016943 +name: lower premolar tooth +alt_id: UBERON:4200143 +synonym: "lower premolar tooth" EXACT [] +synonym: "LP" BROAD ABBREVIATION [] +synonym: "mandibular premolar tooth" EXACT [] +is_a: UBERON:0003268 ! tooth of lower jaw +is_a: UBERON:0007120 ! premolar tooth +intersection_of: UBERON:0007120 ! premolar tooth +intersection_of: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0016944 +name: upper premolar tooth +alt_id: UBERON:4200144 +synonym: "maxillary premolar tooth" EXACT [] +synonym: "UP" BROAD ABBREVIATION [] +synonym: "upper premolar tooth" EXACT [] +is_a: UBERON:0003267 ! tooth of upper jaw +is_a: UBERON:0007120 ! premolar tooth +intersection_of: UBERON:0007120 ! premolar tooth +intersection_of: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0017098 +name: retractor lateralis posterior muscle +alt_id: UBERONTEMP:000a0d60-aa06-477d-936c-ba14ac4f0c2d +synonym: "M. retractor lateralis posterior" EXACT [] +synonym: "posterior retractor lateralis" EXACT [] +is_a: UBERON:0017196 ! retractor lateralis muscle +disjoint_from: UBERON:0017099 {source="lexical"} ! retractor lateralis anterior muscle + +[Term] +id: UBERON:0017099 +name: retractor lateralis anterior muscle +synonym: "anterior retractor lateralis" EXACT [] +synonym: "M. retractor lateralis anterior" EXACT [] +is_a: UBERON:0017196 ! retractor lateralis muscle + +[Term] +id: UBERON:0017102 +name: flexor cruris lateralis pars accessoria muscle +alt_id: UBERONTEMP:0238a879-c73c-4c7a-953b-9f5cda48db02 +synonym: "M. flexor cruris lateralis pars accessoria" EXACT [] +synonym: "pars accessoria of M. flexor cruris lateralis" EXACT [] +is_a: UBERON:0017156 ! flexor cruris lateralis muscle + +[Term] +id: UBERON:0017156 +name: flexor cruris lateralis muscle +alt_id: UBERONTEMP:367dba08-73f2-4ae2-8b00-bd7087482a2d +synonym: "M. flexor cruris lateralis" EXACT [] +is_a: UBERON:0000366 {source="UBERONTEMP"} ! flexor muscle +is_a: UBERON:0003663 ! hindlimb muscle + +[Term] +id: UBERON:0017157 +name: exoccipital-atlas joint +alt_id: UBERONTEMP:372c02ad-f2bd-4cf8-b55c-9b686c3d62f4 +def: "A synovial joint that connects a vertebral bone 1 and connects a exoccipital bone." [OBOL:automatic] +synonym: "atlanto-exoccipital joint" EXACT [UBERONTEMP:372c02ad-f2bd-4cf8-b55c-9b686c3d62f4] +is_a: UBERON:0002217 ! synovial joint +intersection_of: UBERON:0002217 ! synovial joint +intersection_of: connects UBERON:0001092 ! vertebral bone 1 +intersection_of: connects UBERON:0001693 ! exoccipital bone +relationship: connects UBERON:0001092 ! vertebral bone 1 +relationship: connects UBERON:0001693 ! exoccipital bone +relationship: part_of UBERON:0011138 ! postcranial axial skeletal system + +[Term] +id: UBERON:0017160 +name: lumen of hemipenial sheath +def: "A anatomical space that is enclosed by a hemipenal sheath." [OBOL:automatic] +synonym: "hemipenis sheath lumen" EXACT [] +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:4100111 ! hemipenal sheath +relationship: luminal_space_of UBERON:4100111 ! hemipenal sheath +relationship: part_of UBERON:4100111 ! hemipenal sheath + +[Term] +id: UBERON:0017161 +name: hemipenial mucuous gland +def: "A gland within the hemipenial sheath that provides lubrication for the hemipenis." [ISBN:9781840765649] +synonym: "mucuous gland of hemipenis sheath" EXACT [] +is_a: UBERON:0000414 ! mucous gland +is_a: UBERON:0005399 ! male reproductive gland +intersection_of: UBERON:0000414 ! mucous gland +intersection_of: part_of UBERON:0008812 ! hemipenis +relationship: located_in UBERON:0017160 ! lumen of hemipenial sheath +relationship: part_of UBERON:0008812 ! hemipenis + +[Term] +id: UBERON:0017162 +name: hemipenial holocrine gland +def: "A holocrine gland that is part of a hemipenis." [OBOL:automatic] +synonym: "holocrine gland of hemipenis" EXACT [] +synonym: "holoctine gland of hemipenis sheath" EXACT [] +synonym: "sebaceous gland of hemipenis sheath" RELATED INCONSISTENT [] +is_a: UBERON:0005399 ! male reproductive gland +is_a: UBERON:0012344 ! holocrine gland +intersection_of: UBERON:0012344 ! holocrine gland +intersection_of: part_of UBERON:0008812 ! hemipenis +relationship: part_of UBERON:0008812 ! hemipenis + +[Term] +id: UBERON:0017163 +name: skin bony tubercle +alt_id: http://purl.bioontology.org/ontology/provisional/3b77fb04-1e62-43af-a84b-5d5eb7388525 +alt_id: http://purl.bioontology.org/ontology/provisional/bdc28b9d-8fe6-4175-ae67-002f61493279 +def: "A bony structure embedded in skin, roughly equivalent to osteoderms." [PHENOSCAPE:Nizar] +synonym: "bony tubercle" BROAD [] +synonym: "bony tubercles" RELATED PLURAL [UBERONTEMP:3b77fb04-1e62-43af-a84b-5d5eb7388525] +is_a: UBERON:0005813 ! tubercle +is_a: UBERON:0013703 ! integumentary projection +intersection_of: UBERON:0005813 ! tubercle +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +intersection_of: part_of UBERON:0002199 ! integument +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: part_of UBERON:0002199 ! integument + +[Term] +id: UBERON:0017164 +name: dorsal cloacal gland +alt_id: http://purl.bioontology.org/ontology/provisional/2cb7c05f-bfbf-4393-8c2a-70218b824b41 +alt_id: http://purl.bioontology.org/ontology/provisional/3bde5870-7193-4f1c-a9c3-930cef534038 +def: "Cloacal gland in female salamanders that secrete into the dorsal walls of the cloaca, anterior and / or posterior to the spermathecae or near the spermathecal common tube" [http://www.jstor.org/stable/1466953, PHENOSCAPE:wd] +is_a: UBERON:0012478 ! cloacal gland +relationship: part_of UBERON:0003100 ! female organism + +[Term] +id: UBERON:0017180 +name: hemipenis keratinized epithelium +def: "A keratinized stratified squamous epithelium that is part of a hemipenis." [OBOL:automatic] +synonym: "epithelium hemipenis sheath" RELATED [] +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0012329 ! keratinized stratified squamous epithelium +intersection_of: UBERON:0012329 ! keratinized stratified squamous epithelium +intersection_of: part_of UBERON:0008812 ! hemipenis +relationship: located_in UBERON:0017160 ! lumen of hemipenial sheath +relationship: part_of UBERON:0008812 ! hemipenis + +[Term] +id: UBERON:0017196 +name: retractor lateralis muscle +alt_id: UBERONTEMP:65267252-c554-4d25-acbb-e1d1a95d1367 +synonym: "m. retractor lateralis" EXACT [] +synonym: "retractor lateralis" BROAD [] +is_a: UBERON:0001630 ! muscle organ +relationship: has_muscle_insertion UBERON:0008812 {source="cjm"} ! hemipenis + +[Term] +id: UBERON:0017249 +name: incisive process of premaxilla +alt_id: http://purl.bioontology.org/ontology/provisional/2018775c-cd54-4503-88bc-9b62d35a1fdb +alt_id: http://purl.bioontology.org/ontology/provisional/b0379d68-e54b-4dac-851c-0336cfb85a8f +alt_id: http://purl.bioontology.org/ontology/provisional/b247b724-0e9c-44bd-bbd2-b84e6cb5b072 +alt_id: http://purl.bioontology.org/ontology/provisional/f17c9aff-4a92-418e-989f-b8e9dd62caf6 +def: "A small protuberence on the lingual surface of the premaxilla, immediately posterior to the teeth." [PHENOSCAPE:alex] +synonym: "incisive bone" RELATED [] +synonym: "incisive process" RELATED [] +xref: UBERONTEMP:b0379d68-e54b-4dac-851c-0336cfb85a8f +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002244 ! premaxilla + +[Term] +id: UBERON:0017258 +name: placentome of cotyledonary placenta +alt_id: http://purl.bioontology.org/ontology/provisional/8b514716-1381-474b-93d5-1ac01c28f54c +alt_id: http://purl.bioontology.org/ontology/provisional/c4f989c4-2805-49a3-8241-b5e37405e9ca +def: "An anatomical group consisting of a placental caruncle and a placental cotyldeon, a placental unit in some mammals such as ruminants." [http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/ruminants.html] +synonym: "placentome" EXACT [PHENOSCAPE:ad] +synonym: "placentomes" RELATED PLURAL [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0034921 ! multi organ part structure +relationship: has_part UBERON:0010008 ! placental cotyledon +relationship: has_part UBERON:0017259 ! placental caruncle +relationship: part_of UBERON:0001987 ! placenta + +[Term] +id: UBERON:0017259 +name: placental caruncle +def: "An oval or round thickening in the uterine mucosa resulting from proliferation of subepithelial connective tissue, in the maternal side of the placentome." [http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/ruminants.html] +is_a: UBERON:0000478 ! extraembryonic structure +relationship: located_in UBERON:0005048 ! mucosa of uterine tube +relationship: part_of UBERON:0017258 ! placentome of cotyledonary placenta + +[Term] +id: UBERON:0017261 +name: intertarsal sesamoid +alt_id: http://purl.bioontology.org/ontology/provisional/c97fd8d8-cf3e-4326-938d-bea58477423d +def: "A sesamoid element that is part of a tarsal skeleton." [OBOL:automatic] +synonym: "tarsal sesamoid" RELATED [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0011141 ! appendicular ossicle +is_a: UBERON:0013631 ! sesamoid element +intersection_of: UBERON:0013631 ! sesamoid element +intersection_of: part_of UBERON:0009879 ! tarsal skeleton +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0017269 +name: primary premolar tooth +synonym: "deciduous premolar tooth" EXACT [] +synonym: "primary bicuspid" RELATED [] +synonym: "primary premolar" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/421227007 +is_a: UBERON:0007115 ! deciduous tooth +is_a: UBERON:0007120 ! premolar tooth +intersection_of: UBERON:0007120 ! premolar tooth +intersection_of: part_of UBERON:0007116 ! primary dentition + +[Term] +id: UBERON:0017270 +name: secondary premolar tooth +synonym: "permanent premolar tooth" EXACT [] +synonym: "secondary bicuspid" RELATED [] +synonym: "secondary premolar" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/422038004 +is_a: UBERON:0007120 ! premolar tooth +is_a: UBERON:0007775 ! secondary tooth +intersection_of: UBERON:0007120 ! premolar tooth +intersection_of: part_of UBERON:0007774 ! secondary dentition + +[Term] +id: UBERON:0017271 +name: upper primary premolar tooth +synonym: "maxillary primary premolar tooth" EXACT [] +synonym: "upper deciduous premolar tooth" EXACT [] +is_a: UBERON:0016944 ! upper premolar tooth +is_a: UBERON:0017269 ! primary premolar tooth +is_a: UBERON:0018616 ! primary upper tooth +intersection_of: UBERON:0007120 ! premolar tooth +intersection_of: part_of UBERON:0001709 ! upper jaw region +intersection_of: part_of UBERON:0007116 ! primary dentition + +[Term] +id: UBERON:0017272 +name: lower primary premolar tooth +synonym: "lower deciduous premolar tooth" EXACT [] +synonym: "mandibular primary premolar tooth" EXACT [] +is_a: UBERON:0016943 ! lower premolar tooth +is_a: UBERON:0017269 ! primary premolar tooth +is_a: UBERON:0018617 ! primary lower tooth +intersection_of: UBERON:0007120 ! premolar tooth +intersection_of: part_of UBERON:0001710 ! lower jaw region +intersection_of: part_of UBERON:0007116 ! primary dentition + +[Term] +id: UBERON:0017294 +name: horn of hemipenis +alt_id: http://purl.bioontology.org/ontology/provisional/3f8eb04d-3229-487c-9c0e-b65e1a1f035e +alt_id: http://purl.bioontology.org/ontology/provisional/53cf86f8-2122-4125-bc72-117201b4f4c4 +alt_id: http://purl.bioontology.org/ontology/provisional/faea86d9-5281-441b-be89-0f0be1d49129 +synonym: "hemipenis horn" EXACT [UBERONTEMP:faea86d9-5281-441b-be89-0f0be1d49129] +synonym: "hemipenis horns" RELATED PLURAL [UBERONTEMP:faea86d9-5281-441b-be89-0f0be1d49129] +is_a: UBERON:0004529 ! anatomical projection +relationship: part_of UBERON:0008812 ! hemipenis + +[Term] +id: UBERON:0017295 +name: cingulum of tooth +def: "The portion of the teeth, occurring on the lingual or palatal aspects, that forms a convex protuberance at the cervical third of the anatomic crown. It represents the lingual or palatal developmental lobe of these teeth." [http://en.wikipedia.org/wiki/Cingulum_(tooth)] +synonym: "cingulum (dentis)" EXACT [FMA:56731] +synonym: "cingulum dentis" EXACT LATIN [FMA:56731, FMA:TA] +synonym: "tooth cingulum" EXACT [FMA:56731] +xref: Cingulum:(tooth) +xref: FMA:56731 +xref: http://www.snomedbrowser.com/Codes/Details/245650005 +is_a: UBERON:0016930 ! ridge of tooth +relationship: part_of UBERON:0003675 {source="FMA"} ! tooth crown + +[Term] +id: UBERON:0017296 +name: cingulum of incisor tooth +synonym: "incisor tooth cingulum" EXACT [FMA:56733] +xref: FMA:56733 +is_a: UBERON:0017295 ! cingulum of tooth +intersection_of: UBERON:0017295 ! cingulum of tooth +intersection_of: part_of UBERON:0001098 ! incisor tooth +relationship: part_of UBERON:0001098 ! incisor tooth + +[Term] +id: UBERON:0017297 +name: cingulum of canine tooth +synonym: "canine tooth cingulum" EXACT [FMA:56734] +xref: FMA:56734 +is_a: UBERON:0017295 ! cingulum of tooth +intersection_of: UBERON:0017295 ! cingulum of tooth +intersection_of: part_of UBERON:0003674 ! cuspid +relationship: part_of UBERON:0003674 ! cuspid + +[Term] +id: UBERON:0017298 +name: cingulum of upper incisor tooth +synonym: "cingulum of maxillary incisor tooth" EXACT [FMA:56736] +synonym: "upper incisor tooth cingulum" EXACT [FMA:56736] +xref: FMA:56736 +is_a: UBERON:0013613 ! upper jaw cingulum +is_a: UBERON:0017296 ! cingulum of incisor tooth +intersection_of: UBERON:0017295 ! cingulum of tooth +intersection_of: part_of UBERON:0001098 ! incisor tooth +intersection_of: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0017299 +name: cingulum of lower incisor tooth +synonym: "cingulum of mandibular incisor tooth" EXACT [FMA:56737] +synonym: "lower incisor tooth cingulum" EXACT [FMA:56737] +xref: FMA:56737 +is_a: UBERON:0013612 ! lower jaw cingulum +is_a: UBERON:0017296 ! cingulum of incisor tooth +intersection_of: UBERON:0017295 ! cingulum of tooth +intersection_of: part_of UBERON:0001098 ! incisor tooth +intersection_of: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0017312 +name: cingulum of upper canine tooth +synonym: "cingulum of maxillary canine tooth" EXACT [FMA:56752] +synonym: "upper canine tooth cingulum" EXACT [FMA:56752] +xref: FMA:56752 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0013613 ! upper jaw cingulum +is_a: UBERON:0017297 ! cingulum of canine tooth +intersection_of: UBERON:0017295 ! cingulum of tooth +intersection_of: part_of UBERON:0018621 ! upper canine tooth +relationship: part_of UBERON:0018621 ! upper canine tooth + +[Term] +id: UBERON:0017313 +name: cingulum of lower canine tooth +synonym: "cingulum of mandibular canine tooth" EXACT [FMA:56753] +synonym: "lower canine tooth cingulum" EXACT [FMA:56753] +xref: FMA:56753 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0013612 ! lower jaw cingulum +is_a: UBERON:0017297 ! cingulum of canine tooth +intersection_of: UBERON:0017295 ! cingulum of tooth +intersection_of: part_of UBERON:0018622 ! lower canine tooth +relationship: part_of UBERON:0018622 ! lower canine tooth + +[Term] +id: UBERON:0017612 +name: cingulum of lower jaw molar +def: "A ridge that girdles the base of a lower molar tooth" [http://en.wiktionary.org/wiki/cingulid] +synonym: "cingulid" BROAD [] +synonym: "cingulid of molar tooth" EXACT [] +synonym: "tooth cingulid" RELATED [] +is_a: UBERON:0013612 ! lower jaw cingulum +is_a: UBERON:0017614 ! cingulum of molar tooth +intersection_of: UBERON:0017295 ! cingulum of tooth +intersection_of: part_of UBERON:0001710 ! lower jaw region +intersection_of: part_of UBERON:0003655 ! molar tooth + +[Term] +id: UBERON:0017613 +name: cingulum of upper jaw molar +def: "A ridge that girdles the base of a upper molar tooth" [http://en.wiktionary.org/wiki/cingulum] +synonym: "cingulum" BROAD [] +is_a: UBERON:0013613 ! upper jaw cingulum +is_a: UBERON:0017614 ! cingulum of molar tooth +intersection_of: UBERON:0017295 ! cingulum of tooth +intersection_of: part_of UBERON:0001709 ! upper jaw region +intersection_of: part_of UBERON:0003655 ! molar tooth + +[Term] +id: UBERON:0017614 +name: cingulum of molar tooth +is_a: UBERON:0017295 ! cingulum of tooth +intersection_of: UBERON:0017295 ! cingulum of tooth +intersection_of: part_of UBERON:0003655 ! molar tooth +relationship: part_of UBERON:0003655 ! molar tooth + +[Term] +id: UBERON:0017615 +name: vomerine dentition +def: "A set of teeth in which each tooth that attaches to a vomer." [OBOL:automatic] +synonym: "vomerine teeth" RELATED [] +xref: AAO:0000635 +is_a: UBERON:0003672 ! dentition +intersection_of: UBERON:0003672 ! dentition +intersection_of: attaches_to UBERON:0002396 ! vomer +relationship: attaches_to UBERON:0002396 ! vomer + +[Term] +id: UBERON:0017616 +name: afferent spiracular artery +def: "A section of a pharyngeal arch artery that carries blood away from the spiracle." [ISBN:0073040584] +is_a: UBERON:0003469 ! respiratory system artery +is_a: UBERON:0003496 ! head blood vessel +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0003118 ! pharyngeal arch artery 1 +intersection_of: supplies UBERON:0010019 ! spiracle (sensu Vertebrata) +relationship: branching_part_of UBERON:0003118 ! pharyngeal arch artery 1 +relationship: part_of UBERON:0003118 ! pharyngeal arch artery 1 +relationship: supplies UBERON:0010019 ! spiracle (sensu Vertebrata) + +[Term] +id: UBERON:0017617 +name: efferent spiracular artery +def: "A section of a pharyngeal arch artery that drains the spiracle." [ISBN:0073040584] +is_a: UBERON:0003469 ! respiratory system artery +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0003118 ! pharyngeal arch artery 1 +intersection_of: drains UBERON:0010019 ! spiracle (sensu Vertebrata) +relationship: branching_part_of UBERON:0003118 ! pharyngeal arch artery 1 +relationship: drains UBERON:0010019 ! spiracle (sensu Vertebrata) +relationship: part_of UBERON:0003118 ! pharyngeal arch artery 1 + +[Term] +id: UBERON:0017618 +name: extensor pollicis brevis muscle +def: "The Extensor pollicis brevis lies on the medial side of, and is closely connected with, the Abductor pollicis longus." [http://en.wikipedia.org/wiki/Extensor_pollicis_brevis_muscle] +synonym: "extensor pollicis" RELATED [http://en.wikipedia.org/wiki/Extensor_pollicis_brevis_muscle] +synonym: "extensor pollicis brevis" EXACT [FMA:38518] +xref: EMAPA:36195 +xref: FMA:38518 +xref: http://en.wikipedia.org/wiki/Extensor_pollicis_brevis_muscle +xref: http://www.snomedbrowser.com/Codes/Details/244995005 +is_a: UBERON:0011024 {source="UBERONTEMP"} ! extrinsic extensor muscle of manus + +[Term] +id: UBERON:0017620 +name: spine appendage of head +def: "A spine appendage that is part of a head." [OBOL:automatic] +is_a: UBERON:0008260 ! spine appendage +intersection_of: UBERON:0008260 ! spine appendage +intersection_of: part_of UBERON:0000033 ! head +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0017621 +name: cephalic spine +alt_id: UBERONTEMP:8c052198-acff-4165-b1a0-fd6bb2de6e10 +def: "One of the spines, probably denticle derivatives, occurring singly or in pairs just behind the orbit on the cheek area in some fossil sharks. May have occurred only in males and may have served to hold the female during copulation, e.g. in the Jurassic genera Hybodus, Asteracanthus and Acrodus." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] +synonym: "cephalic spines" RELATED PLURAL [UBERONTEMP:8c052198-acff-4165-b1a0-fd6bb2de6e10] +is_a: UBERON:0017620 ! spine appendage of head +relationship: present_in_taxon NCBITaxon:119203 + +[Term] +id: UBERON:0017623 +name: prepelvic clasper +def: "A supplemental clasper in Holocephali, in front of the pelvic fin" [http://www.briancoad.com/dictionary/complete%20dictionary.htm] +synonym: "pre-pelvic tenaculum" EXACT [] +synonym: "prepelvic tenaculum" EXACT [http://www.briancoad.com/dictionary/complete%20dictionary.htm] +is_a: UBERON:0010516 ! clasper + +[Term] +id: UBERON:0017624 +name: pseudoclasper +def: "one or more pairs of stiff ossified lobes or prongs found in the tip of the intromittent organ of Bythitoidei" [http://www.briancoad.com/dictionary/complete%20dictionary.htm] +is_a: UBERON:0004529 ! anatomical projection +relationship: part_of UBERON:0008811 ! intromittent organ + +[Term] +id: UBERON:0017625 +name: pterygopodial gland +def: "A gland of uncertain function at the base of the clasper in skates and rays, occupying the position of the siphon of other Elasmobranchii." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] +is_a: UBERON:0002530 ! gland +relationship: adjacent_to UBERON:0010516 ! clasper + +[Term] +id: UBERON:0017626 +name: transverse folds of rectum +def: "Houston's valves (or transverse folds of rectum) are semi-lunar transverse folds of the rectal wall that protrude into the anal canal. Their use seems to be to support the weight of fecal matter, and prevent its urging toward the anus, which would produce a strong urge to defecate. Although the term rectum means straight, these transverse folds overlap each other during the empty state of the intestine to such an extent that, as Houston remarked, they require considerable maneuvering to conduct an instrument along the canal, as often occurs in sigmoidoscopy and colonoscopy. These folds are about 12 mm. in width and are composed of the circular muscle coat of the rectum. They are usually three in number; sometimes a fourth is found, and occasionally only two are present. One is situated near the commencement of the rectum, on the right side. A second extends inward from the left side of the tube, opposite the middle of the sacrum. A third, the largest and most constant, projects backward from the forepart of the rectum, opposite the fundus of the urinary bladder. When a fourth is present, it is situated nearly 2.5 cm above the anus on the left and posterior wall of the tube." [http://en.wikipedia.org/wiki/Houston_valve] +synonym: "Houston's valve" RELATED [http://en.wikipedia.org/wiki/Houston_valve] +synonym: "Houston's valve (middle of three)" EXACT [FMA:75657] +synonym: "Houston's valves" RELATED [http://en.wikipedia.org/wiki/Houston_valve] +synonym: "Kohlrausch's fold (middle of three)" EXACT [FMA:75657] +synonym: "plicae transversae recti" EXACT LATIN [FMA:TA] +synonym: "set of transverse folds of rectum" EXACT [FMA:75657] +synonym: "transverse folds of rectum" EXACT [FMA:75657] +synonym: "transverse folds of rectum" RELATED [http://en.wikipedia.org/wiki/Houston_valve] +xref: FMA:75657 +xref: Houston:valve +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0001052 ! rectum + +[Term] +id: UBERON:0017627 +name: rectal valve +def: "A thin diaphragm located in the posterior fifth of the intestine of some Centrolophidae, e.g. Seriolella punctata, Schedophilus huttoni and Psenes pellucidus, or in others a sphincter-like constriction, e.g. Seriolella brama. A deep purple fluid was confined to the valve in S. punctata, but was found throughout the intestine in the other two species referred to. The fluid might be used to void a coloured cloud to distract or deter a predator." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] +is_a: UBERON:0003978 ! valve +relationship: part_of UBERON:0001052 ! rectum + +[Term] +id: UBERON:0017628 +name: swim bladder gas gland +def: "A structure with numerous blood vessels (retia mirabilia) in the gas bladder that secretes gases from the blood." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] +synonym: "fascis mirabilis" RELATED [http://www.briancoad.com/dictionary/complete%20dictionary.htm] +synonym: "gas gland" EXACT [] +synonym: "red gland" RELATED [http://www.briancoad.com/dictionary/complete%20dictionary.htm] +synonym: "red gland of gas bladder" RELATED [] +is_a: UBERON:0002530 ! gland +is_a: UBERON:0005177 ! trunk region element +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0006860 ! swim bladder +relationship: has_part UBERON:0013218 ! rete mirabile +relationship: part_of UBERON:0006860 ! swim bladder + +[Term] +id: UBERON:0017629 +name: mormyromast organ +def: "An innervated group of cells in a round capsule at the end of a jelly-filled tube opening to the skin surface of Gymnarchidae and Mormyridae." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] +synonym: "mormyromast" EXACT [http://www.briancoad.com/dictionary/complete%20dictionary.htm] +synonym: "snout organ" RELATED [http://www.briancoad.com/dictionary/complete%20dictionary.htm] +is_a: UBERON:0010521 ! electroreceptor organ +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0017631 +name: calcified structure of brain +xref: Corpora:arenacea +is_a: UBERON:0000476 ! acellular anatomical structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0000955 ! brain + +[Term] +id: UBERON:0017632 +name: pineal corpora arenacea +def: "A calcified structure of brain that is part of a pineal body." [OBOL:automatic] +xref: Corpora:arenacea +xref: http://www.snomedbrowser.com/Codes/Details/369232008 +is_a: UBERON:0017631 ! calcified structure of brain +intersection_of: UBERON:0017631 ! calcified structure of brain +intersection_of: part_of UBERON:0001905 ! pineal body +relationship: part_of UBERON:0001905 ! pineal body + +[Term] +id: UBERON:0017633 +name: choroid plexus corpora arenacea +def: "A calcified structure of brain that is part of a choroid plexus." [OBOL:automatic] +is_a: UBERON:0017631 ! calcified structure of brain +intersection_of: UBERON:0017631 ! calcified structure of brain +intersection_of: part_of UBERON:0001886 ! choroid plexus +relationship: part_of UBERON:0001886 ! choroid plexus + +[Term] +id: UBERON:0017634 +name: xenarthrale +def: "A supplementary intervertebral articulation found in xenarthrans characterized by two sets of zygapophyseal facets in the postdiaphragmatic vertebrae, one medial and one lateral to the met apophysis" [http://eurekamag.com/research/035/907/morphology-xenarthrous-vertebrae.php] +synonym: "xenarthrous articulation" EXACT [] +synonym: "xenarthrous joint" EXACT [] +is_a: UBERON:0001468 ! intervertebral joint + +[Term] +id: UBERON:0017635 +name: paired venous dural sinus +synonym: "paired dural venous sinus" EXACT [FMA:52568] +xref: FMA:52568 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0005486 ! venous dural sinus +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0005486 ! venous dural sinus +intersection_of: in_lateral_side_of UBERON:0000033 ! head +disjoint_from: UBERON:0017640 ! unpaired venous dural sinus +relationship: in_lateral_side_of UBERON:0000033 ! head + +[Term] +id: UBERON:0017637 +name: marginal venous sinus +def: "A paired dural venous sinus at the rim of the foramen magnum." [http://www.ncbi.nlm.nih.gov/pubmed/20682099] +synonym: "intracranial marginal sinus" EXACT [] +synonym: "marginal sinus" RELATED [FMA:50766] +xref: EHDAA2:0001064 +xref: EHDAA:8693 +xref: FMA:50766 +is_a: UBERON:0017635 {source="FMA"} ! paired venous dural sinus +relationship: develops_from UBERON:0006282 {source="EHDAA2"} ! primary head vein + +[Term] +id: UBERON:0017638 +name: primitive marginal sinus +def: "The primitive marginal sinuses (PMS) are embryonic sinuses forming the later superior sagittal sinus." [http://www.ncbi.nlm.nih.gov/pubmed/22744799] +synonym: "marginal sinus" RELATED [] +xref: EHDAA2:0001514 +is_a: UBERON:0017635 ! paired venous dural sinus +relationship: develops_from UBERON:0006282 {source="EHDAA2"} ! primary head vein +relationship: part_of UBERON:0000922 ! embryo + +[Term] +id: UBERON:0017639 +name: sinus of von Szily +def: "A circular gap in the iris near the pupil between the layers of the optic cup (von Szily, 1902)" [http://orcid.org/0000-0002-6601-2165, https://doi.org/10.1007/BF00413234] +synonym: "marginal sinus" RELATED [] +synonym: "marginal sinus (v. Szily)" EXACT [] +synonym: "marginal sinus of von Szily" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/361511003 +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:0010312 ! immature eye +relationship: part_of UBERON:0003072 ! optic cup + +[Term] +id: UBERON:0017640 +name: unpaired venous dural sinus +synonym: "unpaired dural venous sinus" EXACT [FMA:52569] +xref: FMA:52569 +is_a: UBERON:0005486 ! venous dural sinus + +[Term] +id: UBERON:0017641 +name: meningeal branch of spinal nerve +def: "Branch of spinal nerve that innervates the structures of the vertebral column." [http://en.wikipedia.org/wiki/Spinal_nerve, http://orcid.org/0000-0002-6601-2165] +synonym: "ramus meningeus nervorum spinales" EXACT [FMA:5988] +synonym: "recurrent meningeal branch of spinal nerve" EXACT [FMA:5988] +synonym: "sinuvertebral branch of spinal nerve" EXACT [FMA:5988] +synonym: "sinuvertebral nerve" RELATED [FMA:5988] +xref: FMA:5988 +xref: http://en.wikipedia.org/wiki/Meningeal_branches_of_spinal_nerve +xref: http://www.snomedbrowser.com/Codes/Details/308794007 +is_a: UBERON:0001021 ! nerve +relationship: branching_part_of UBERON:0005476 {source="FMA"} ! spinal nerve trunk +relationship: part_of UBERON:0005476 ! spinal nerve trunk + +[Term] +id: UBERON:0017642 +name: communicating branch of spinal nerve +def: "Rami communicans (plural rami communicantes) is the term used for a nerve which connects two other nerves. When used without further definition, it almost always refers to a communicating branch between a spinal nerve and the sympathetic trunk. More specifically, it usually refers to one of the following: Gray ramus communicans White ramus communicans" [http://en.wikipedia.org/wiki/Rami_communicans] +synonym: "rami communicantes" BROAD [http://en.wikipedia.org/wiki/Rami_communicans] +synonym: "rami communicantes of spinal nerve" RELATED [http://en.wikipedia.org/wiki/Rami_communicans] +xref: FMA:5874 +xref: http://www.snomedbrowser.com/Codes/Details/310727003 +xref: Rami:communicans +is_a: UBERON:0001021 ! nerve +relationship: branching_part_of UBERON:0005476 ! spinal nerve trunk +relationship: part_of UBERON:0005476 ! spinal nerve trunk + +[Term] +id: UBERON:0017643 +name: external thoracic vein +def: "extension of the long thoracic vein that collects blood from the mammary glands" [ISBM13:978-0226870137] +synonym: "external mammary vein" RELATED [ISBM13:978-0226870137] +xref: EMAPA:37145 {source="MA:th"} +xref: MA:0002236 +is_a: UBERON:0005194 {source="MA"} ! thoracic vein + +[Term] +id: UBERON:0017646 +name: internal mammary vein +def: "One of two veins running parallel to their corresponding internal mammary arteries that unite forming one vessel. These veins drain the chest wall into the innominate vein." [ncithesaurus:Internal_Mammary_Vein] +xref: EMAPA:37159 {source="MA:th"} +xref: MA:0002148 +xref: NCIT:C32854 +is_a: UBERON:0001638 {source="ncithesaurus"} ! vein + +[Term] +id: UBERON:0017647 +name: prevertebral muscle of neck +def: "A prevertebral muscle that is part of a neck." [http://orcid.org/0000-0002-6601-2165] +xref: EMAPA:25130 +xref: MA:0003144 +is_a: UBERON:0002377 ! muscle of neck +is_a: UBERON:0008549 ! prevertebral muscle +intersection_of: UBERON:0008549 ! prevertebral muscle +intersection_of: part_of UBERON:0000974 ! neck + +[Term] +id: UBERON:0017648 +name: ventral body wall +def: "The ventral part of the body wall" [http://orcid.org/0000-0002-6601-2165] +synonym: "anterior body wall" RELATED [FMA:86934] +xref: EMAPA:37984 {source="MA:th"} +xref: FMA:86934 +is_a: UBERON:0000309 ! body wall +intersection_of: UBERON:0000309 ! body wall +intersection_of: part_of UBERON:0013235 ! ventrum +relationship: part_of UBERON:0013235 ! ventrum + +[Term] +id: UBERON:0017649 +name: dorsal body wall +def: "The dorsal part of the body wall" [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0000309 ! body wall +intersection_of: UBERON:0000309 ! body wall +intersection_of: part_of UBERON:0001137 ! dorsum +relationship: part_of UBERON:0001137 ! dorsum + +[Term] +id: UBERON:0017650 +name: developing mesenchymal structure +def: "A mesenchyme-derived anatomical entity undergoing a transtion to become another structure." [AEO:0001016, AEO:JB] +xref: AEO:0001016 +is_a: UBERON:0005423 ! developing anatomical structure +intersection_of: UBERON:0005423 ! developing anatomical structure +intersection_of: composed_primarily_of UBERON:0003104 ! mesenchyme +relationship: composed_primarily_of UBERON:0003104 ! mesenchyme + +[Term] +id: UBERON:0017651 +name: salivary gland primordium +def: "A primordium that has the potential to develop into a saliva-secreting gland." [OBOL:automatic] +is_a: UBERON:0001048 ! primordium +is_a: UBERON:0006598 ! presumptive structure +intersection_of: UBERON:0001048 ! primordium +intersection_of: has_potential_to_develop_into UBERON:0001044 ! saliva-secreting gland +relationship: has_potential_to_develop_into UBERON:0001044 ! saliva-secreting gland + +[Term] +id: UBERON:0017652 +name: intermaxillary gland (sensu Osteolepiformes) +def: "A gland lodged in a fossa formed mainly of dermal bones, situated wholly in front of the nasal capsules of Osteolepiformes." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] +synonym: "intermaxillary gland" BROAD [] +is_a: UBERON:0002530 ! gland + +[Term] +id: UBERON:0017653 +name: intermaxillary salivary gland +def: "A gland located at the pre-nasal area being divided anteriorly by the ascendent processes of the intermaxillary bone." [https://doi.org/10.1590/S0101-81751988000400003] +synonym: "intermaxillary gland" BROAD [] +is_a: UBERON:0001044 ! saliva-secreting gland +relationship: part_of UBERON:0007375 ! roof of mouth +relationship: present_in_taxon NCBITaxon:377294 + +[Term] +id: UBERON:0017654 +name: buccal gland +def: "Any of the small racemose mucous glands in the mucous membrane lining the cheeks" [http://www.merriam-webster.com/medical/buccal%20gland] +synonym: "cheek gland" RELATED [] +xref: BTO:0005767 +xref: http://www.snomedbrowser.com/Codes/Details/25421004 +is_a: UBERON:0000414 ! mucous gland +intersection_of: UBERON:0000414 ! mucous gland +intersection_of: part_of UBERON:0001567 ! cheek +relationship: part_of UBERON:0001567 ! cheek + +[Term] +id: UBERON:0017659 +name: ventral surface of penis +subset: pheno_slim +synonym: "urethral surface of penis" EXACT [FMA:19624] +xref: FMA:19624 +is_a: UBERON:0036215 ! anatomical surface region +intersection_of: UBERON:0036215 ! anatomical surface region +intersection_of: in_ventral_side_of UBERON:0000989 ! penis +relationship: in_ventral_side_of UBERON:0000989 ! penis +relationship: part_of UBERON:0000989 ! penis + +[Term] +id: UBERON:0017670 +name: bony part of cervical vertebral arch +def: "A bony part of vertebral arch that is part of a cervical vertebral arch." [OBOL:automatic] +subset: pheno_slim +synonym: "bony part of arch of cervical vertebra" EXACT [FMA:29794] +xref: FMA:29794 +is_a: UBERON:0016419 ! bony part of vertebral arch +intersection_of: UBERON:0016419 ! bony part of vertebral arch +intersection_of: part_of UBERON:0008434 ! cervical vertebral arch +relationship: part_of UBERON:0008434 ! cervical vertebral arch + +[Term] +id: UBERON:0017671 +name: bony part of vertebral arch of first sacral vertebra +def: "A bony part of vertebral arch that is part of a sacral vertebra 1." [OBOL:automatic] +subset: pheno_slim +synonym: "bony part of vertebral arch of first sacral segment" EXACT [FMA:32395] +xref: FMA:32395 +is_a: UBERON:0016419 ! bony part of vertebral arch +intersection_of: UBERON:0016419 ! bony part of vertebral arch +intersection_of: part_of UBERON:0004622 ! sacral vertebra 1 +relationship: part_of UBERON:0004622 ! sacral vertebra 1 + +[Term] +id: UBERON:0017672 +name: abdominal viscera +def: "A viscus that is part of a abdomen." [OBOL:automatic] +subset: pheno_slim +synonym: "abdominal viscera" EXACT [FMA:32413] +synonym: "abdominal viscera set" EXACT [FMA:32413] +synonym: "set of abdominal viscera" EXACT [FMA:32413] +xref: FMA:32413 +xref: FMA:67355 +is_a: UBERON:0002075 ! viscus +is_a: UBERON:0005172 ! abdomen element +intersection_of: UBERON:0002075 ! viscus +intersection_of: part_of UBERON:0000916 ! abdomen + +[Term] +id: UBERON:0017690 +name: internal surface of frontal bone +subset: pheno_slim +synonym: "facies interna (os frontale)" EXACT [FMA:52856] +synonym: "facies interna ossis frontalis" EXACT LATIN [FMA:52856, FMA:TA] +xref: FMA:52856 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000209 ! tetrapod frontal bone + +[Term] +id: UBERON:0017692 +name: internal surface of cranial base +def: "internal (endosteal) surface of the base of skull" [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "basis cranii interna" EXACT LATIN [FMA:53128, FMA:TA] +xref: FMA:53128 +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0002517 ! basicranium + +[Term] +id: UBERON:0017716 +name: thenar eminence +def: "A raised fleshy area on the palm of the hand near the base of the thumb." [http://medical-dictionary.thefreedictionary.com/Thenar+muscle] +subset: pheno_slim +synonym: "thenar part of palm" EXACT [FMA:61520] +xref: FMA:61520 +xref: http://www.snomedbrowser.com/Codes/Details/362748007 +xref: Thenar:eminence +is_a: UBERON:0034929 ! external soft tissue zone +relationship: part_of UBERON:0008878 {source="FMA"} ! palmar part of manus + +[Term] +id: UBERON:0017717 +name: hypothenar eminence +def: "Hypothenar refers to a group of three muscles of the palm that control the motion of the little finger. The three muscles are: Abductor digiti minimi Flexor digiti minimi Opponens digiti minimi" [http://en.wikipedia.org/wiki/Hypothenar_eminence] +subset: pheno_slim +synonym: "hypothenar part of palm" EXACT [FMA:61523] +xref: FMA:61523 +xref: http://www.snomedbrowser.com/Codes/Details/362749004 +xref: Hypothenar:eminence +is_a: UBERON:0034929 ! external soft tissue zone +relationship: part_of UBERON:0008878 {source="FMA"} ! palmar part of manus + +[Term] +id: UBERON:0017732 +name: raphe of scrotum +def: "A ridge of tissue that extends along the midline of the scrotum." [HPO:probinson] +subset: pheno_slim +synonym: "scrotal raphe" EXACT [FMA:75130] +xref: FMA:75130 +xref: http://www.snomedbrowser.com/Codes/Details/279583006 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0034929 ! external soft tissue zone +relationship: continuous_with UBERON:0006655 ! septum of scrotum +relationship: develops_from UBERON:0013241 ! embryonic urethral groove +relationship: intersects_midsagittal_plane_of UBERON:0001300 ! scrotum +relationship: part_of UBERON:0001300 ! scrotum +relationship: part_of UBERON:0035106 ! raphe of perineum + +[Term] +id: UBERON:0017748 +name: lower primary incisor tooth +def: "A primary incisor tooth that is part of a lower jaw region." [OBOL:automatic] +subset: pheno_slim +synonym: "deciduous lower incisor tooth" RELATED [FMA:84215] +synonym: "lower deciduous incisor tooth" EXACT [FMA:84215] +synonym: "primary lower incisor tooth" EXACT [] +xref: FMA:84215 +xref: http://www.snomedbrowser.com/Codes/Details/420793009 +is_a: UBERON:0003451 ! lower jaw incisor +is_a: UBERON:0016476 ! primary incisor tooth +is_a: UBERON:0018617 ! primary lower tooth +intersection_of: UBERON:0016476 ! primary incisor tooth +intersection_of: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0017749 +name: withers +def: "The ridge between the shoulder blades of a four-legged mammal." [http://en.wikipedia.org/wiki/Withers] +xref: http://en.wikipedia.org/wiki/Withers +xref: http://www.snomedbrowser.com/Codes/Details/89778005 +is_a: UBERON:0034929 ! external soft tissue zone +relationship: part_of UBERON:0001137 ! dorsum + +[Term] +id: UBERON:0017750 +name: proximal mesopodial endochondral element +def: "A mesopodial endochondral element that is in the most proximal part of the mesopodial skeleton, connected to the zeugopodial skeleton." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0015063 ! autopod endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: connected_to UBERON:0011584 ! zeugopodial skeleton +intersection_of: part_of UBERON:0006716 ! mesopodium region +relationship: connected_to UBERON:0011584 ! zeugopodial skeleton +relationship: part_of UBERON:0009878 ! mesopodial skeleton + +[Term] +id: UBERON:0017751 +name: proximal mesopodial cartilage element +def: "A proximal mesopodial endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0017750 ! proximal mesopodial endochondral element +intersection_of: UBERON:0017750 ! proximal mesopodial endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0018099 +name: distal mesopodial endochondral element +def: "An endochondral element in the distal portion of the mesopodial skeleton, between the central mesopodial skeleton and the metapodial skeleton" [http://orcid.org/0000-0002-6601-2165] +synonym: "distal mesopodial" EXACT SYSTEMATIC [UBERON:cjm] +is_a: UBERON:0015063 ! autopod endochondral element +relationship: part_of UBERON:0009878 ! mesopodial skeleton + +[Term] +id: UBERON:0018100 +name: distal mesopodial cartilage element +def: "A distal mesopodial endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0018099 ! distal mesopodial endochondral element +intersection_of: UBERON:0018099 ! distal mesopodial endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0018101 ! distal mesopodial pre-cartilage condensation + +[Term] +id: UBERON:0018101 +name: distal mesopodial pre-cartilage condensation +def: "A distal mesopodial endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation +is_a: UBERON:0018099 ! distal mesopodial endochondral element +intersection_of: UBERON:0018099 ! distal mesopodial endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0018102 +name: distal mesopodial bone +def: "A distal mesopodial endochondral element that is composed primarily of a bone tissue." [OBOL:automatic] +is_a: UBERON:0003656 ! mesopodium bone +is_a: UBERON:0018099 ! distal mesopodial endochondral element +intersection_of: UBERON:0018099 ! distal mesopodial endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0018100 ! distal mesopodial cartilage element + +[Term] +id: UBERON:0018103 +name: posterior fascicle of palatopharyngeus +def: "The thinner portion of the muscle of the palatopharyngeal arch, originating in the region of the midline where its fibers interdigitate with the contralateral partner, then passing posterior to the levator veli palatini muscle to join the longitudinal layer of pharyngeal musculature; acts as a sort of sphincter, reducing the caliber of the isthmus of fauces at the palatopharyngeal arch." [http://medical-dictionary.thefreedictionary.com/velopharyngeal+sphincter] +synonym: "fasciculus posterior (musculus palatopharyngeus)" EXACT [FMA:46684] +synonym: "fasciculus posterior musculus palatopharyngei" EXACT LATIN [FMA:46684, FMA:TA] +synonym: "musculus sphincter palatopharyngeus" EXACT [FMA:TA] +synonym: "palatopharyngeal sphincter" EXACT [FMA:46684] +synonym: "velopharyngeal sphincter" EXACT [http://medical-dictionary.thefreedictionary.com/velopharyngeal+sphincter] +xref: FMA:46684 +xref: http://www.snomedbrowser.com/Codes/Details/244801005 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0010234 {source="FMA"} ! palatopharyngeus muscle + +[Term] +id: UBERON:0018104 +name: parafoveal part of retina +def: "The intermediate belt surrounding the fovea centralis" [http://orcid.org/0000-0002-6601-2165] +synonym: "parafoveal belt" RELATED [] +synonym: "parafoveal retina" RELATED [] +xref: http://www.snomedbrowser.com/Codes/Details/264120002 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0000053 ! macula lutea +relationship: surrounds UBERON:0001786 ! fovea centralis + +[Term] +id: UBERON:0018105 +name: perifoveal part of retina +def: "The outermost region surrounding the fovea centralis" [http://orcid.org/0000-0002-6601-2165] +synonym: "perifoveal belt" RELATED [] +synonym: "perifoveal retina" RELATED [] +xref: http://www.snomedbrowser.com/Codes/Details/280617008 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0000053 ! macula lutea +relationship: surrounds UBERON:0001786 ! fovea centralis + +[Term] +id: UBERON:0018107 +name: foveola of retina +def: "A region of the fovea centralis that lies in the center of the fovea and contains only cone cells, and a cone-shaped zone of Müller cells" [http://orcid.org/0000-0002-6601-2165] +synonym: "foveola" RELATED [] +xref: http://en.wikipedia.org/wiki/Foveola +xref: http://www.snomedbrowser.com/Codes/Details/399857002 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001786 ! fovea centralis + +[Term] +id: UBERON:0018108 +name: superior auricular muscle +def: "The superior auricular muscle, the largest of the three auriculares muscles, is also thin and fan-shaped. Its fibers arise from the galea aponeurotica, and converge to be inserted by a thin, flattened tendon into the upper part of the cranial surface of the auricula." [http://en.wikipedia.org/wiki/Superior_auricular_muscle] +synonym: "auricularis superior" EXACT [FMA:46855] +xref: FMA:46855 +xref: http://en.wikipedia.org/wiki/Superior_auricular_muscle +xref: http://www.snomedbrowser.com/Codes/Details/244759009 +is_a: UBERON:0001583 {source="FMA"} ! extrinsic auricular muscle + +[Term] +id: UBERON:0018109 +name: anterior auricular muscle +def: "The anterior auricular muscle, the smallest of the three auriculares muscles, is thin and fan-shaped, and its fibers are pale and indistinct. It arises from the lateral edge of the galea aponeurotica, and its fibers converge to be inserted into a projection on the front of the helix." [http://en.wikipedia.org/wiki/Anterior_auricular_muscle_muscle] +synonym: "auricularis anterior" EXACT [FMA:46856] +xref: FMA:46856 +xref: http://en.wikipedia.org/wiki/Anterior_auricular_muscle +is_a: UBERON:0001583 {source="FMA"} ! extrinsic auricular muscle +disjoint_from: UBERON:0018110 {source="lexical"} ! posterior auricular muscle + +[Term] +id: UBERON:0018110 +name: posterior auricular muscle +def: "The posterior auricular muscle consists of two or three fleshy fasciculi, which arise from the mastoid portion of the temporal bone by short aponeurotic fibers. They are inserted into the lower part of the cranial surface of the concha." [http://en.wikipedia.org/wiki/Posterior_auricular_muscle_muscle] +synonym: "auricularis posterior" EXACT [FMA:46857] +synonym: "post auricular muscle" RELATED [http://en.wikipedia.org/wiki/Posterior_auricular_muscle] +synonym: "post-auricular muscle" RELATED [http://en.wikipedia.org/wiki/Posterior_auricular_muscle] +xref: FMA:46857 +xref: http://en.wikipedia.org/wiki/Posterior_auricular_muscle +xref: http://www.snomedbrowser.com/Codes/Details/244761000 +is_a: UBERON:0001583 {source="FMA"} ! extrinsic auricular muscle + +[Term] +id: UBERON:0018111 +name: muscle layer of rectum +def: "A muscle layer that is part of the rectum" [http://orcid.org/0000-0002-6601-2165] +synonym: "muscular coat of rectum" EXACT [FMA:15035] +synonym: "muscularis externa of rectum" EXACT [FMA:15035] +synonym: "rectal muscularis propria" EXACT [FMA:15035] +synonym: "tunica muscularis (rectum)" EXACT [FMA:15035] +synonym: "tunica muscularis recti" EXACT [FMA:TA] +xref: FMA:15035 +is_a: UBERON:0011198 ! muscle layer of large intestine +intersection_of: UBERON:0006660 ! muscular coat +intersection_of: part_of UBERON:0001052 ! rectum +relationship: part_of UBERON:0001052 ! rectum + +[Term] +id: UBERON:0018112 +name: rectum smooth muscle tissue +def: "Any portion of smooth muscle tissue that is part of the rectum" [http://orcid.org/0000-0002-6601-2165] +synonym: "rectal smooth muscle tissue" EXACT [] +synonym: "rectum smooth muscle" EXACT [] +synonym: "smooth muscle of rectum" EXACT [] +is_a: UBERON:0004220 ! large intestine smooth muscle +is_a: UBERON:0004231 ! anal region smooth muscle +is_a: UBERON:0016886 ! muscle tissue of terminal part of digestive tract +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0001052 ! rectum +relationship: part_of UBERON:0001052 ! rectum + +[Term] +id: UBERON:0018113 +name: left kidney interstitium +def: "A kidney interstitium that is part of a left kidney." [OBOL:automatic] +synonym: "left renal stroma" EXACT [FMA:74271] +synonym: "stroma of left kidney" EXACT [FMA:74271] +xref: FMA:74271 +is_a: UBERON:0005215 ! kidney interstitium +intersection_of: UBERON:0005215 ! kidney interstitium +intersection_of: part_of UBERON:0004538 ! left kidney +relationship: part_of UBERON:0004538 ! left kidney + +[Term] +id: UBERON:0018114 +name: right kidney interstitium +def: "A kidney interstitium that is part of a right kidney." [OBOL:automatic] +synonym: "right renal stroma" EXACT [FMA:74270] +synonym: "stroma of right kidney" EXACT [FMA:74270] +xref: FMA:74270 +is_a: UBERON:0005215 ! kidney interstitium +intersection_of: UBERON:0005215 ! kidney interstitium +intersection_of: part_of UBERON:0004539 ! right kidney +relationship: part_of UBERON:0004539 ! right kidney + +[Term] +id: UBERON:0018115 +name: left renal pelvis +def: "A renal pelvis that is part of a left ureter." [OBOL:automatic] +synonym: "pelvis of left ureter" EXACT [FMA:15579] +synonym: "renal pelvis of left kidney" EXACT [FMA:15579] +xref: FMA:15579 +xref: http://www.snomedbrowser.com/Codes/Details/243436005 +is_a: UBERON:0001224 ! renal pelvis +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001224 ! renal pelvis +intersection_of: part_of UBERON:0001223 ! left ureter +relationship: part_of UBERON:0001223 ! left ureter + +[Term] +id: UBERON:0018116 +name: right renal pelvis +def: "A renal pelvis that is part of a right ureter." [OBOL:automatic] +synonym: "pelvis of right kidney" EXACT [FMA:15578] +synonym: "pelvis of right ureter" EXACT [FMA:15578] +xref: FMA:15578 +xref: http://www.snomedbrowser.com/Codes/Details/243419002 +is_a: UBERON:0001224 ! renal pelvis +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0001224 ! renal pelvis +intersection_of: part_of UBERON:0001222 ! right ureter +relationship: part_of UBERON:0001222 ! right ureter + +[Term] +id: UBERON:0018117 +name: left renal cortex interstitium +def: "A renal cortex interstitium that is part of a left kidney." [OBOL:automatic] +synonym: "cortical interstitial tissue of left kidney" EXACT [] +is_a: UBERON:0005270 ! renal cortex interstitium +is_a: UBERON:0018113 ! left kidney interstitium +intersection_of: UBERON:0005270 ! renal cortex interstitium +intersection_of: part_of UBERON:0004538 ! left kidney + +[Term] +id: UBERON:0018118 +name: right renal cortex interstitium +def: "A renal cortex interstitium that is part of a right kidney." [OBOL:automatic] +synonym: "cortical interstitial tissue of right kidney" EXACT [] +is_a: UBERON:0005270 ! renal cortex interstitium +is_a: UBERON:0018114 ! right kidney interstitium +intersection_of: UBERON:0005270 ! renal cortex interstitium +intersection_of: part_of UBERON:0004539 ! right kidney + +[Term] +id: UBERON:0018119 +name: left renal medulla interstitium +def: "A renal medulla interstitium that is part of a left kidney." [OBOL:automatic] +synonym: "medullary interstitial tissue of left kidney" EXACT [] +is_a: UBERON:0005211 ! renal medulla interstitium +is_a: UBERON:0018113 ! left kidney interstitium +intersection_of: UBERON:0005211 ! renal medulla interstitium +intersection_of: part_of UBERON:0004538 ! left kidney + +[Term] +id: UBERON:0018120 +name: right renal medulla interstitium +def: "A renal medulla interstitium that is part of a right kidney." [OBOL:automatic] +synonym: "medullary interstitial tissue of right kidney" EXACT [] +is_a: UBERON:0005211 ! renal medulla interstitium +is_a: UBERON:0018114 ! right kidney interstitium +intersection_of: UBERON:0005211 ! renal medulla interstitium +intersection_of: part_of UBERON:0004539 ! right kidney + +[Term] +id: UBERON:0018131 +name: periovarian fat pad +def: "The encapsulated adipose tissue associated with the ovaries." [http://orcid.org/0000-0002-6601-2165] +synonym: "ovarian fat pad" RELATED [] +synonym: "periovarian fat depot" EXACT [] +xref: MA:0003064 +is_a: UBERON:0003428 ! gonadal fat pad +relationship: part_of UBERON:0000992 ! ovary + +[Term] +id: UBERON:0018132 +name: tail fat pad +def: "Encapsulated adipose tissue that is part of a tail." [http://orcid.org/0000-0002-6601-2165] +synonym: "tail fat depot" EXACT [] +is_a: UBERON:0003599 ! tail connective tissue +is_a: UBERON:0003916 ! fat pad +intersection_of: UBERON:0003916 ! fat pad +intersection_of: part_of UBERON:0007812 ! post-anal tail +relationship: present_in_taxon NCBITaxon:9258 +relationship: present_in_taxon NCBITaxon:9305 +relationship: present_in_taxon NCBITaxon:9935 +relationship: seeAlso Tail:fat + +[Term] +id: UBERON:0018133 +name: monotreme bill +def: "An elongated snout found in monotremes." [http://orcid.org/0000-0002-6601-2165] +synonym: "beak" BROAD [] +synonym: "montreme beak" RELATED [] +synonym: "platypus beak" RELATED [] +synonym: "platypus bill" NARROW [] +is_a: UBERON:0006333 ! snout + +[Term] +id: UBERON:0018134 +name: rugal fold of scrotum +def: "A folded ridge of skin that is part of a scrotum superficial to the dartos muscle" [http://orcid.org/0000-0002-6601-2165] +synonym: "folded ridge of skin of scrotum" EXACT PLURAL [] +synonym: "scrotal rugae" EXACT PLURAL [] +is_a: UBERON:0015479 ! scrotum skin + +[Term] +id: UBERON:0018135 +name: fibrocollagenous connective tissue +xref: FMA:83521 +is_a: UBERON:0011824 ! fibrous connective tissue + +[Term] +id: UBERON:0018136 +name: maxillary fenestra +def: "A fenestra or hole which pierces the maxilla anterior to the antorbital fenestra." [http://palaeos.com/vertebrates/glossary/glossaryM.html] +is_a: UBERON:0004705 ! fenestra +intersection_of: UBERON:0004705 ! fenestra +intersection_of: part_of UBERON:0002397 ! maxilla +relationship: part_of UBERON:0002397 ! maxilla + +[Term] +id: UBERON:0018137 +name: premaxillary fenestra +def: "A fenestra that is part of a premaxilla." [OBOL:automatic] +is_a: UBERON:0004705 ! fenestra +intersection_of: UBERON:0004705 ! fenestra +intersection_of: part_of UBERON:0002244 ! premaxilla +relationship: part_of UBERON:0002244 ! premaxilla + +[Term] +id: UBERON:0018140 +name: mammary lobe +def: "A cluster of mammary gland lobules. In humans this is a distinct lobe and located in the breast region." [http://orcid.org/0000-0002-6601-2165] +synonym: "breast lobe" NARROW HUMAN_PREFERRED [BTO:0004718, NCBITaxon:9606] +synonym: "lobe of breast" NARROW HUMAN_PREFERRED [BTO:0004718, NCBITaxon:9606] +synonym: "lobe of mammary gland" NARROW HUMAN_PREFERRED [BTO:0004718, NCBITaxon:9606] +synonym: "lobi glandulae mammariae" NARROW HUMAN_PREFERRED [BTO:0004718, NCBITaxon:9606] +synonym: "lobus glandulae mammariae" RELATED LATIN [BTO:0004718] +xref: BTO:0004718 +xref: http://linkedlifedata.com/resource/umls/id/C0222616 +xref: NCIT:C93232 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0009912 ! anatomical lobe +relationship: has_part UBERON:0001912 ! lobule of mammary gland +relationship: part_of UBERON:0001911 ! mammary gland +relationship: part_of UBERON:0002100 ! trunk + +[Term] +id: UBERON:0018141 +name: anterior perforated substance +def: "Regional part of telencephalon lying on the basal surface and bounded by the olfactory trigone rostrally, the diagonal band medially and caudally and the prepiriform cortex laterally. It is characterized by many perforations caused by small blood vessels entering the gray matter (Meyer et al., J. Comp. Neurol 284: 405, 1989)." [BIRNLEX:1096] +synonym: "anterior perforated area" EXACT [FMA:61891] +synonym: "anterior perforated space" EXACT [FMA:61891] +synonym: "area olfactoria (Mai)" RELATED LATIN [NeuroNames:282] +synonym: "eminentia parolfactoria" RELATED LATIN [NeuroNames:282] +synonym: "olfactory area (Carpenter)" RELATED [NeuroNames:282] +synonym: "olfactory area (mai)" EXACT [FMA:61891] +synonym: "olfactory tubercle" RELATED INCONSISTENT [FMA:61891] +synonym: "olfactory tubercle (Ganser)" RELATED [NeuroNames:282] +synonym: "rostral perforated substance" RELATED [NeuroNames:282] +synonym: "substantia perforata anterior" EXACT LATIN [http://en.wikipedia.org/wiki/Anterior_perforated_substance] +synonym: "tuber olfactorium" RELATED LATIN [NeuroNames:282] +xref: BAMS:APS +xref: BIRNLEX:1096 +xref: DHBA:10642 +xref: FMA:61891 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=282 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=282 {source="BIRNLEX:1096"} +xref: http://en.wikipedia.org/wiki/Anterior_perforated_substance +xref: http://linkedlifedata.com/resource/umls/id/C0162436 +xref: http://www.snomedbrowser.com/Codes/Details/369108006 +xref: UMLS:C0162436 {source="BIRNLEX:1096"} +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001893 ! telencephalon + +[Term] +id: UBERON:0018142 +name: caudal vertebra endochondral element +alt_id: UBERON:0015006 +def: "Any vertebra endochondral element that is part of the caudal region of the vertebral column (tail or coccyx)." [http://orcid.org/0000-0002-6601-2165] +synonym: "caudal vertebra element" EXACT [] +synonym: "coccygeal vertebra element" NARROW [] +synonym: "coccyx vertebra element" NARROW [] +synonym: "tail vertebra element" EXACT [] +is_a: UBERON:0005174 ! dorsal region element +is_a: UBERON:0010913 ! vertebral element +intersection_of: UBERON:0010913 ! vertebral element +intersection_of: part_of UBERON:0006076 ! caudal region of vertebral column +union_of: UBERON:0001095 ! caudal vertebra +union_of: UBERON:0013503 ! caudal vertebra cartilage element +union_of: UBERON:0013504 ! caudal vertebra pre-cartilage condensation +relationship: part_of UBERON:0006076 ! caudal region of vertebral column + +[Term] +id: UBERON:0018143 +name: transverse process of cervical vertebra +def: "A transverse process that is part of a cervical vertebra" [http://orcid.org/0000-0002-6601-2165] +xref: FMA:23894 +xref: FMA:9913 +xref: http://www.snomedbrowser.com/Codes/Details/280730000 +is_a: UBERON:0001077 ! transverse process of vertebra +intersection_of: UBERON:0001077 ! transverse process of vertebra +intersection_of: part_of UBERON:0002413 ! cervical vertebra +relationship: part_of UBERON:0002413 ! cervical vertebra + +[Term] +id: UBERON:0018144 +name: cervical rib +def: "A rib that is attached to a cervical vertebra." [http://orcid.org/0000-0002-6601-2165] +xref: EMAPA:37825 {source="MA:th"} +xref: UBERONTEMP:d522e981-3a43-4cab-9862-4344b5c3ff22 +is_a: UBERON:0002228 ! rib +is_a: UBERON:0003458 ! neck bone +intersection_of: UBERON:0002228 ! rib +intersection_of: connected_to UBERON:0002413 ! cervical vertebra +relationship: connected_to UBERON:0002413 ! cervical vertebra +relationship: part_of UBERON:0005434 ! cervical region + +[Term] +id: UBERON:0018145 +name: lumbar rib +def: "A rib that is attached to a lumbar vertebra." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0002228 ! rib +intersection_of: UBERON:0002228 ! rib +intersection_of: connected_to UBERON:0002414 ! lumbar vertebra +relationship: connected_to UBERON:0002414 ! lumbar vertebra + +[Term] +id: UBERON:0018146 +name: transverse process of lumbar vertebra +def: "A transverse process that is part of a lumbar vertebra" [http://orcid.org/0000-0002-6601-2165] +synonym: "costa lumbalis" EXACT LATIN [FMA:65469, FMA:TA] +synonym: "lumbar transverse process" EXACT [FMA:16080] +xref: FMA:16080 +xref: FMA:65469 +xref: http://www.snomedbrowser.com/Codes/Details/280733003 +is_a: UBERON:0001077 ! transverse process of vertebra +intersection_of: UBERON:0001077 ! transverse process of vertebra +intersection_of: part_of UBERON:0002414 ! lumbar vertebra +relationship: part_of UBERON:0002414 ! lumbar vertebra + +[Term] +id: UBERON:0018148 +name: ampullary gland secretion +def: "A bodily secretion that produced_by a ampullary gland." [OBOL:automatic] +is_a: UBERON:0006530 ! seminal fluid +intersection_of: UBERON:0000456 ! secretion of exocrine gland +intersection_of: produced_by UBERON:0009645 ! ampullary gland +relationship: produced_by UBERON:0009645 ! ampullary gland + +[Term] +id: UBERON:0018149 +name: angle of oral opening +comment: Serves as attachment site for zygomaticus major muscle +synonym: "angle of mouth" EXACT [FMA:77269] +synonym: "mouth angle" EXACT [FMA:77269] +xref: FMA:77269 +xref: http://www.snomedbrowser.com/Codes/Details/263940002 +xref: MFMO:0000145 +is_a: UBERON:0007651 ! anatomical junction +relationship: part_of UBERON:0000166 {source="MFMO-modified"} ! oral opening + +[Term] +id: UBERON:0018150 +name: skin of lower lip +def: "A zone of skin that is part of a lower lip." [OBOL:automatic] +synonym: "lower lip skin" EXACT [FMA:24767] +xref: FMA:24767 +xref: http://www.snomedbrowser.com/Codes/Details/281630002 +is_a: UBERON:0001458 ! skin of lip +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0001835 ! lower lip +relationship: part_of UBERON:0001835 ! lower lip + +[Term] +id: UBERON:0018151 +name: skin of upper lip +def: "A zone of skin that is part of a upper lip." [OBOL:automatic] +synonym: "upper lip skin" EXACT [FMA:24765] +xref: FMA:24765 +xref: http://www.snomedbrowser.com/Codes/Details/281629007 +is_a: UBERON:0001458 ! skin of lip +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:1000021 ! skin of face +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0001834 ! upper lip +relationship: part_of UBERON:0001834 ! upper lip + +[Term] +id: UBERON:0018152 +name: pars flaccida of tympanic membrane +def: "A small, triangular, flaccid portion of the tympanic membrane, or eardrum, lying above the malleolar folds, attached directly to the petrous bone at the notch of Rivinus." [http://en.wikipedia.org/wiki/Pars_flaccida_of_tympanic_membrane] +synonym: "flaccid part" RELATED [http://en.wikipedia.org/wiki/Pars_flaccida_of_tympanic_membrane] +synonym: "pars flaccida" RELATED [http://en.wikipedia.org/wiki/Pars_flaccida_of_tympanic_membrane] +synonym: "pars flaccida (membrana tympanica)" EXACT LATIN [FMA:56721] +synonym: "pars flaccida membranae tympanicae" EXACT LATIN [FMA:56721, FMA:TA] +synonym: "Shrapnell's membrane" EXACT [FMA:56721] +xref: FMA:56721 +xref: http://en.wikipedia.org/wiki/Pars_flaccida_of_tympanic_membrane +xref: http://www.snomedbrowser.com/Codes/Details/279594005 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002364 {source="FMA"} ! tympanic membrane + +[Term] +id: UBERON:0018153 +name: pars tensa of tympanic membrane +synonym: "pars tensa (membrana tympanica)" EXACT [FMA:56722] +synonym: "pars tensa membranae tympanicae" EXACT LATIN [FMA:56722, FMA:TA] +xref: FMA:56722 +xref: http://www.snomedbrowser.com/Codes/Details/362555006 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002364 {source="FMA"} ! tympanic membrane + +[Term] +id: UBERON:0018154 +name: ligament of middle ear +def: "A ligament that is part of a middle ear." [OBOL:automatic] +is_a: UBERON:0000211 ! ligament +intersection_of: UBERON:0000211 ! ligament +intersection_of: part_of UBERON:0001756 ! middle ear +relationship: part_of UBERON:0001756 ! middle ear + +[Term] +id: UBERON:0018155 +name: posterior incudal ligament +def: "A fold of mucous membrane that runs from the fossa incudus to the incus." [ISBN:9781604061550] +is_a: UBERON:0008841 ! suspensory ligament +is_a: UBERON:0018154 ! ligament of middle ear +relationship: attaches_to UBERON:0001688 ! incus bone +relationship: composed_primarily_of UBERON:0000344 ! mucosa + +[Term] +id: UBERON:0018156 +name: malleal ligament +def: "A skeletal ligament that attaches to the malleus." [ISBN:9781604061550] +is_a: UBERON:0008846 ! skeletal ligament +is_a: UBERON:0018154 ! ligament of middle ear +intersection_of: UBERON:0008846 ! skeletal ligament +intersection_of: attaches_to UBERON:0001689 ! malleus bone +relationship: attaches_to UBERON:0001689 ! malleus bone + +[Term] +id: UBERON:0018157 +name: lateral malleal ligament +def: "A malleal ligament that extends from the bony margin of the notch of Rivinus to the neck of the malleus." [ISBN:9781604061550] +is_a: UBERON:0018156 ! malleal ligament +relationship: attaches_to UBERON:0005355 ! malleus neck + +[Term] +id: UBERON:0018158 +name: superior malleal ligament +def: "A malleal ligament that extends from the tempen tympani to the head of the malleus." [ISBN:9781604061550] +is_a: UBERON:0018156 ! malleal ligament +relationship: attaches_to UBERON:0005342 ! malleus head + +[Term] +id: UBERON:0018159 +name: anterior malleal ligament +def: "A malleal ligament that extends from the anterior tympanic wall to the anterior process of the malleus." [ISBN:9781604061550] +is_a: UBERON:0018156 ! malleal ligament +relationship: attaches_to UBERON:0018160 ! anterior process of malleus + +[Term] +id: UBERON:0018160 +name: anterior process of malleus +synonym: "folian process" EXACT [FMA:52771] +synonym: "processus anterior (malleus)" EXACT [FMA:52771] +synonym: "processus anterior mallei" EXACT LATIN [FMA:52771, FMA:TA] +synonym: "rau's process" EXACT [FMA:52771] +xref: FMA:52771 +xref: http://www.snomedbrowser.com/Codes/Details/368922002 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001689 {source="FMA"} ! malleus bone + +[Term] +id: UBERON:0018161 +name: annular ligament of stapes +def: "A ring of fibrous tissue that connects the base of the stapes to the oval window of the inner ear." [http://en.wikipedia.org/wiki/Annular_ligament_of_stapes] +synonym: "annular ligament" BROAD [http://en.wikipedia.org/wiki/Annular_ligament_of_stapes] +synonym: "annular ligament of base of stapes" EXACT [] +synonym: "annular stapedial ligament" EXACT [http://en.wikipedia.org/wiki/Annular_ligament_of_stapes] +synonym: "ligamentum anulare stapedis" EXACT LATIN [http://en.wikipedia.org/wiki/Annular_ligament_of_stapes] +xref: FMA:60884 +xref: http://en.wikipedia.org/wiki/Annular_ligament_of_stapes +xref: http://www.snomedbrowser.com/Codes/Details/368936007 +is_a: UBERON:0008845 ! nonskeletal ligament +intersection_of: UBERON:0008845 ! nonskeletal ligament +intersection_of: attaches_to UBERON:0001687 ! stapes bone +intersection_of: attaches_to UBERON:0002501 ! oval window +relationship: attaches_to UBERON:0001687 ! stapes bone +relationship: attaches_to UBERON:0002501 ! oval window +relationship: composed_primarily_of UBERON:0011824 ! fibrous connective tissue + +[Term] +id: UBERON:0018226 +name: pulmonary part of lymphatic system +def: "An organ system subdivision that is the part of the lymphoid system that includes the pulmonary lymphatic vessels." [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "pulmonary lymphatic chain" EXACT [FMA:67999] +synonym: "pulmonary lymphatic vasculature" RELATED [] +xref: FMA:67999 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0011216 ! organ system subdivision +intersection_of: UBERON:0011216 ! organ system subdivision +intersection_of: part_of UBERON:0002048 ! lung +intersection_of: part_of UBERON:0006558 ! lymphatic part of lymphoid system +relationship: has_part UBERON:0018227 ! pulmonary lymphatic vessel +relationship: part_of UBERON:0002048 ! lung +relationship: part_of UBERON:0006558 ! lymphatic part of lymphoid system + +[Term] +id: UBERON:0018227 +name: pulmonary lymphatic vessel +def: "A lymphatic vessel that is part of a lung." [OBOL:automatic] +synonym: "lymphatic vessel of lung" EXACT [] +xref: FMA:234006 +xref: http://www.snomedbrowser.com/Codes/Details/321862009 +is_a: UBERON:0003456 ! respiratory system lymphatic vessel +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0001473 ! lymphatic vessel +intersection_of: part_of UBERON:0002048 ! lung +relationship: part_of UBERON:0018226 ! pulmonary part of lymphatic system + +[Term] +id: UBERON:0018228 +name: extrahepatic branch of portal vein +synonym: "extrahepatic part of portal vein" EXACT [FMA:15418] +xref: FMA:15418 +xref: http://www.snomedbrowser.com/Codes/Details/273304006 +is_a: UBERON:0002017 {source="MA"} ! portal vein + +[Term] +id: UBERON:0018229 +name: renin-angiotensin system +def: "A system consisting of renin, angiotensin-converting enzyme, and angiotensin II. Renin, an enzyme produced in the kidney, acts on angiotensinogen, an alpha-2 globulin produced by the liver, forming angiotensin I. The converting enzyme contained in the lung acts on angiotensin I in the plasma converting it to angiotensin II, the most powerful directly pressor substance known. It causes contraction of the arteriolar smooth muscle and has other indirect actions mediated through the adrenal cortex." [MESH:G06.535.805] +subset: pheno_slim +synonym: "renin angiotensin aldosterone system" RELATED [MESH:G06.535.805] +synonym: "renin angiotensin system" RELATED [MESH:G06.535.805] +synonym: "renin-angiotensin system" RELATED [MESH:G06.535.805] +synonym: "renin-angiotensin-aldosterone system" RELATED [MESH:G06.535.805] +xref: FMA:74787 +xref: MESH:G06.535.805 +is_a: UBERON:0011216 ! organ system subdivision +relationship: part_of UBERON:0000949 ! endocrine system + +[Term] +id: UBERON:0018230 +name: femoral canal +def: "The compartment of the femoral sheath that contains efferent lymphatic vessels and a lymph node embedded in a small amount of areolar tissue. It is conical in shape and is about 2 cm long. The femoral canal is bordered: Anteriorly by the inguinal ligament Posteriorly by the pectineal ligament Medially by the lacunar ligament Laterally by the femoral vein It contains the lymph nodes of Cloquet or Rosenmuller. It should not be confused with the nearby adductor canal." [http://en.wikipedia.org/wiki/Femoral_canal] +xref: Femoral:canal +xref: FMA:22405 +xref: http://www.snomedbrowser.com/Codes/Details/361912001 +is_a: UBERON:0004111 ! anatomical conduit +relationship: conduit_for UBERON:0010397 ! efferent lymphatic vessel +relationship: part_of UBERON:0002355 ! pelvic region of trunk + +[Term] +id: UBERON:0018231 +name: labyrinthine artery +def: "A long slender branch of the anterior inferior cerebellar artery (85%-100% cases) or basilar artery (<15% cases), arises from near the middle of the artery; it accompanies the vestibulocochlear nerve through the internal acoustic meatus, and is distributed to the internal ear." [http://en.wikipedia.org/wiki/Labyrinthine_artery] +synonym: "arteria auditiva interna" EXACT LATIN [http://en.wikipedia.org/wiki/Labyrinthine_artery] +synonym: "arteria labyrinthi" EXACT LATIN [http://en.wikipedia.org/wiki/Labyrinthine_artery] +synonym: "artery of inner ear" BROAD [FMA:50548] +synonym: "internal auditory artery" EXACT [FMA:50548] +xref: EMAPA:37093 {source="MA:th"} +xref: FMA:50548 +xref: http://www.snomedbrowser.com/Codes/Details/148672009 +xref: Labyrinthine:artery +xref: NCIT:C32834 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001846 ! internal ear + +[Term] +id: UBERON:0018232 +name: axillary sweat gland +def: "A sweat gland that is part of a axilla." [OBOL:automatic] +synonym: "axillary apocrine sweat gland" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "sweat gland of axilla" EXACT [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0000382 {source="ISBN:0123813611"} ! apocrine sweat gland +intersection_of: UBERON:0001820 ! sweat gland +intersection_of: part_of UBERON:0009472 ! axilla +relationship: part_of UBERON:0009472 ! axilla + +[Term] +id: UBERON:0018233 +name: gland of Zeis +def: "Glands of Zeis are unilobar sebaceous glands located on the margin of the eyelid. The glands of Zeis service the eyelash. These glands produce an oily substance that is issued through the excretory ducts of the sebaceous lobule into the middle portion of the hair follicle." [http://en.wikipedia.org/wiki/Gland_of_Zeis] +subset: pheno_slim +synonym: "ciliary sebaceous gland of eyelid" EXACT [FMA:59191] +synonym: "gland of Zeis" EXACT [] +synonym: "gland of Zeiss" EXACT [FMA:59191] +synonym: "Zeis gland" EXACT [] +xref: FMA:59191 +xref: http://en.wikipedia.org/wiki/Gland_of_Zeis +xref: http://www.snomedbrowser.com/Codes/Details/281070008 +is_a: UBERON:0013231 ! sebaceous gland of eyelid + +[Term] +id: UBERON:0018234 +name: stroma of pancreas +def: "A stroma that is part of a pancreas." [OBOL:automatic] +synonym: "pancreatic stroma" EXACT [FMA:63121] +xref: FMA:63121 +is_a: UBERON:0003891 ! stroma +intersection_of: UBERON:0003891 ! stroma +intersection_of: part_of UBERON:0001264 ! pancreas +relationship: part_of UBERON:0001264 ! pancreas + +[Term] +id: UBERON:0018235 +name: capsule of pancreas +def: "A capsule that divides the parenchyma of the pancreas into lobes and lobules" [ISBN:0123813611] +synonym: "pancreatic capsule" EXACT [] +is_a: UBERON:0003893 ! capsule +intersection_of: UBERON:0003893 ! capsule +intersection_of: part_of UBERON:0001264 ! pancreas +relationship: part_of UBERON:0001264 ! pancreas + +[Term] +id: UBERON:0018236 +name: nucleus of Bischoff +def: "A midline nucleus of the dorsal motor column found in animals with a prominent tail, including alligator, some birds, kangaroo, rat, shrew, great anteater." [http://orcid.org/0000-0002-6601-2165] +synonym: "nucleus of Bishoff" EXACT [] +is_a: UBERON:0018238 {source="ISBN:978-1-4615-0037-7"} ! dorsal column nucleus +relationship: present_in_taxon NCBITaxon:10088 {notes="possible present in mouse", source="ISBN:0123813611"} + +[Term] +id: UBERON:0018237 +name: dorsal column-medial lemniscus pathway +def: "A sensory tract originating in the spinal cord responsible for transmitting fine touch, vibration and conscious proprioceptive information from the body to the cerebral cortex. The components include the fasciculus gracilis and fasciculus cuneatus." [http://en.wikipedia.org/wiki/Posterior_column-medial_lemniscus_pathway] +synonym: "DCML" RELATED [http://en.wikipedia.org/wiki/Posterior_column-medial_lemniscus_pathway] +synonym: "DCML pathway" RELATED [http://en.wikipedia.org/wiki/Posterior_column-medial_lemniscus_pathway] +synonym: "dorsal column" RELATED [http://en.wikipedia.org/wiki/Posterior_column-medial_lemniscus_pathway] +synonym: "dorsal column tract" RELATED [http://en.wikipedia.org/wiki/Posterior_column-medial_lemniscus_pathway] +synonym: "dorsal column-medial lemniscus pathway" RELATED [http://en.wikipedia.org/wiki/Posterior_column-medial_lemniscus_pathway] +synonym: "dorsal column-medial lemniscus system" RELATED [http://en.wikipedia.org/wiki/Posterior_column-medial_lemniscus_pathway] +synonym: "dorsal column-medial lemniscus tract" RELATED [http://en.wikipedia.org/wiki/Posterior_column-medial_lemniscus_pathway] +synonym: "medial lemniscus tracts" RELATED [http://en.wikipedia.org/wiki/Posterior_column-medial_lemniscus_pathway] +synonym: "posterior column pathway" RELATED [http://en.wikipedia.org/wiki/Posterior_column-medial_lemniscus_pathway] +synonym: "posterior column-medial leminscus pathway" RELATED [http://en.wikipedia.org/wiki/Posterior_column-medial_lemniscus_pathway] +synonym: "posterior column-medial lemniscus system" RELATED [http://en.wikipedia.org/wiki/Posterior_column-medial_lemniscus_pathway] +synonym: "posterior column/medial leminscus pathway" RELATED [http://en.wikipedia.org/wiki/Posterior_column-medial_lemniscus_pathway] +xref: DMBA:17759 +xref: http://en.wikipedia.org/wiki/Posterior_column-medial_lemniscus_pathway +is_a: UBERON:0000122 ! neuron projection bundle + +[Term] +id: UBERON:0018238 +name: dorsal column nucleus +def: "A nucleus that contain secondary neurons of the dorsal column-medial lemniscus pathway, which carries fine touch and proprioceptive information from the body to the brain. Examples: gracile nucleus, cuneat nucleus, nucleus of Bishoff." [ISBN:978-1-4615-0037-7] +synonym: "dorsal column nuclei" RELATED PLURAL [NeuroNames:1947] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1947 +xref: http://en.wikipedia.org/wiki/Dorsal_column_nuclei +xref: MBA:720 +is_a: UBERON:0007635 ! nucleus of medulla oblongata +intersection_of: UBERON:0000125 ! neural nucleus +intersection_of: part_of UBERON:0018237 ! dorsal column-medial lemniscus pathway +relationship: part_of UBERON:0018237 ! dorsal column-medial lemniscus pathway + +[Term] +id: UBERON:0018239 +name: rhombomere boundary +def: "A boundary delimiting a rhombomere." [GO:0021654] +synonym: "rhombomere junction" EXACT [] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0007651 ! anatomical junction +intersection_of: UBERON:0007651 ! anatomical junction +intersection_of: connects UBERON:0001892 ! rhombomere +relationship: connects UBERON:0001892 ! rhombomere +relationship: part_of UBERON:0007277 ! presumptive hindbrain + +[Term] +id: UBERON:0018240 +name: panniculus carnosus muscle +def: "The skeletal muscle layer in the superficial fascia deep to the panniculus adiposus" [http://en.wikipedia.org/wiki/Panniculus_carnosus, ISBN:0123813611, MP:0011157] +synonym: "panniculus" BROAD [] +synonym: "panniculus carnosus" EXACT [] +synonym: "panniculus carnosus group" EXACT [MA:0003141] +xref: EMAPA:18189 +xref: EMAPS:1818928 +xref: MA:0003141 +xref: Panniculus:carnosus +is_a: UBERON:0008876 ! hypodermis skeletal muscle layer +relationship: deep_to UBERON:0013488 ! panniculus adiposus +relationship: innervated_by UBERON:0001780 {source="FFED:cw"} ! spinal nerve +relationship: present_in_taxon NCBITaxon:9261 {notes="by contraction of various parts of the panniculus carnosus, the short-beaked echidna can change shape, the most characteristic shape change being achieved by rolling itself into a ball when threatened, so protecting its belly and presenting a defensive array of sharp spines"} + +[Term] +id: UBERON:0018241 +name: prime adult stage +def: "A life cycle stage that starts at completion of development and growth of the sexually mature adult animal, and ends before senescence." [Bgee:AN, https://github.com/obophenotype/uberon/issues/496] +synonym: "adulthood stage" RELATED [] +is_a: UBERON:0000105 ! life cycle stage +property_value: dc-contributor https://github.com/ANiknejad +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/fbastian +relationship: part_of UBERON:0000113 ! post-juvenile adult stage + +[Term] +id: UBERON:0018242 +name: palatine bone horizontal plate +def: "The part of the palatine bone that forms the posterior part (approximately one third) of the bony palate.(Stedmans)" [http://www.medilexicon.com/medicaldictionary.php?t=69540, MGI:cs] +subset: pheno_slim +synonym: "horizontal part of palatine bone" RELATED [http://en.wikipedia.org/wiki/Horizontal_plate_of_palatine_bone] +synonym: "horizontal plate" RELATED [http://en.wikipedia.org/wiki/Horizontal_plate_of_palatine_bone] +synonym: "horizontal plate of palatine bone" EXACT [FMA:52901] +synonym: "lamina horizontalis" BROAD [] +synonym: "lamina horizontalis (os palatinum)" EXACT [FMA:52901] +synonym: "lamina horizontalis ossis palatini" EXACT LATIN [http://www.medilexicon.com/medicaldictionary.php?t=69540] +xref: EMAPA:37931 {source="MA:th"} +xref: FMA:52901 +xref: http://en.wikipedia.org/wiki/Horizontal_plate_of_palatine_bone +xref: http://www.snomedbrowser.com/Codes/Details/368686004 +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0001682 ! palatine bone + +[Term] +id: UBERON:0018243 +name: thymic artery +def: "A vein that supplies blood to the thymus." [http://orcid.org/0000-0002-6601-2165] +comment: The arteries supplying the thymus are derived from the internal thoracic artery, and from the superior thyroid artery and inferior thyroids.[WP] +synonym: "thymic arteries" RELATED PLURAL [http://en.wikipedia.org/wiki/Thymic_branches_of_internal_thoracic_artery] +synonym: "thymic branch of internal thoracic artery" EXACT [FMA:10647] +xref: FMA:10647 +xref: http://en.wikipedia.org/wiki/Thymic_branches_of_internal_thoracic_artery +xref: http://www.snomedbrowser.com/Codes/Details/76543001 +is_a: UBERON:0004573 ! systemic artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0002370 ! thymus +relationship: branching_part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery +relationship: part_of UBERON:0002456 ! internal thoracic artery +relationship: supplies UBERON:0002370 ! thymus + +[Term] +id: UBERON:0018244 +name: superficial cervical thymus +def: "A cervical thymus that is located directly beneath the skin." [https://doi.org/10.1071/ZO9730285] +is_a: UBERON:0009114 ! cervical thymus +relationship: present_in_taxon NCBITaxon:9263 + +[Term] +id: UBERON:0018245 +name: deep cervical thymus +def: "A cervical thymus that is located deep in the ventral cervical region, superficial to hyoid, sternomastoid, and depressor neck muscles." [https://doi.org/10.1071/ZO9730285] +is_a: UBERON:0009114 ! cervical thymus + +[Term] +id: UBERON:0018246 +name: thyroid vein +def: "A vein that drains a thyroid gland." [OBOL:automatic] +xref: EMAPA:18648 +xref: http://www.snomedbrowser.com/Codes/Details/303420005 +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0002046 ! thyroid gland +relationship: drains UBERON:0002046 ! thyroid gland + +[Term] +id: UBERON:0018247 +name: cervical thymic artery +def: "An artery that supplies a cervical thymus." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0018243 ! thymic artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0009114 ! cervical thymus +relationship: supplies UBERON:0009114 ! cervical thymus + +[Term] +id: UBERON:0018248 +name: inferior superficial cervical thymic artery +is_a: UBERON:0018247 ! cervical thymic artery +relationship: supplies UBERON:0018244 ! superficial cervical thymus + +[Term] +id: UBERON:0018249 +name: superior superficial cervical thymic artery +is_a: UBERON:0018247 ! cervical thymic artery +relationship: supplies UBERON:0018244 ! superficial cervical thymus + +[Term] +id: UBERON:0018250 +name: middle thyroid artery +is_a: UBERON:0003847 ! thyroid artery +is_a: UBERON:0035398 ! branch of external carotid artery + +[Term] +id: UBERON:0018251 +name: meningeal vein +def: "One of the veins draining a meninix." [http://orcid.org/0000-0002-6601-2165] +xref: FMA:50839 +xref: http://www.snomedbrowser.com/Codes/Details/84842006 +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0002360 ! meninx +relationship: drains UBERON:0002360 ! meninx + +[Term] +id: UBERON:0018252 +name: internal pudendal vein +def: "Accompanying vein of internal pudendal artery." [http://en.wikipedia.org/wiki/Internal_pudendal_veins] +synonym: "internal pudic vein" RELATED [http://en.wikipedia.org/wiki/Internal_pudendal_veins] +synonym: "vena pudenda interna" EXACT LATIN [http://en.wikipedia.org/wiki/Internal_pudendal_veins] +xref: FMA:18917 +xref: http://en.wikipedia.org/wiki/Internal_pudendal_veins +xref: http://www.snomedbrowser.com/Codes/Details/14885008 +is_a: UBERON:0009029 ! pudendal vein + +[Term] +id: UBERON:0018253 +name: external pudendal vein +def: "One of the veins of the pelvis which drain into the great saphenous vein." [http://en.wikipedia.org/wiki/External_pudendal_vein] +synonym: "external pudic vein" RELATED [http://en.wikipedia.org/wiki/External_pudendal_veins] +synonym: "vena pudenda externa" EXACT LATIN [http://en.wikipedia.org/wiki/External_pudendal_veins] +xref: http://www.snomedbrowser.com/Codes/Details/9231002 +is_a: UBERON:0009029 ! pudendal vein + +[Term] +id: UBERON:0018254 +name: skeletal musculature +subset: grouping_class +xref: EHDAA2:0001842 +xref: EMAPA:35578 +xref: MA:0000165 +is_a: UBERON:0000061 ! anatomical structure +relationship: composed_primarily_of UBERON:0014892 ! skeletal muscle organ +relationship: part_of UBERON:0000383 {source="MA"} ! musculature of body + +[Term] +id: UBERON:0018255 +name: jejunal artery +def: "A branch of the superior mesenteric artery that supplies the jejunum." [http://en.wikipedia.org/wiki/Jejunal_veins, http://orcid.org/0000-0002-6601-2165] +synonym: "jejunal branch of superior mesenteric artery" RELATED [FMA:14808] +xref: FMA:14808 +xref: http://www.snomedbrowser.com/Codes/Details/265391008 +xref: Jejunal:arteries +is_a: UBERON:0004573 ! systemic artery +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0001182 ! superior mesenteric artery +intersection_of: supplies UBERON:0002115 ! jejunum +relationship: branching_part_of UBERON:0001182 ! superior mesenteric artery +relationship: part_of UBERON:0001182 ! superior mesenteric artery +relationship: supplies UBERON:0002115 ! jejunum + +[Term] +id: UBERON:0018256 +name: lacrimal vein +def: "A vein that drains a lacrimal gland." [OBOL:automatic] +xref: FMA:51779 +xref: http://www.snomedbrowser.com/Codes/Details/149582008 +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0001817 ! lacrimal gland +relationship: drains UBERON:0001817 ! lacrimal gland + +[Term] +id: UBERON:0018257 +name: submucosa of digestive tract +def: "Any portion of submucosa that lines the digestive tract." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0000009 ! submucosa +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0001555 ! digestive tract +relationship: part_of UBERON:0001555 ! digestive tract + +[Term] +id: UBERON:0018260 +name: layer of muscle tissue +def: "Any organ component layer that consists of muscle tissue." [http://orcid.org/0000-0002-6601-2165] +xref: FMA:45634 +xref: http://linkedlifedata.com/resource/umls/id/C0225358 +xref: NCIT:C75444 +is_a: UBERON:0004923 ! organ component layer +intersection_of: UBERON:0004923 ! organ component layer +intersection_of: composed_primarily_of UBERON:0002385 ! muscle tissue +relationship: composed_primarily_of UBERON:0002385 ! muscle tissue + +[Term] +id: UBERON:0018261 +name: muscular coat of digestive tract +def: "A muscular coat that is part of a digestive tract." [OBOL:automatic] +synonym: "muscular layer of digestive tract" RELATED [] +synonym: "muscularis externa of digestive tract" RELATED [] +synonym: "tunica externa of digestive tract" RELATED [] +synonym: "tunica muscularis of digestive tract" EXACT [] +is_a: UBERON:0006660 ! muscular coat +intersection_of: UBERON:0006660 ! muscular coat +intersection_of: part_of UBERON:0001555 ! digestive tract +relationship: part_of UBERON:0001555 ! digestive tract + +[Term] +id: UBERON:0018262 +name: dorsal zone of medial entorhinal cortex +synonym: "dorsal zone of the medial part of the entorhinal area" RELATED [NeuroNames:3141] +synonym: "entorhinal area, medial part, dorsal zone" EXACT [ABA:ENTm] +synonym: "entorhinal area, medial part, dorsal zone" RELATED [NeuroNames:3141] +synonym: "entorhinal area, medial part, dorsal zone, layers 1-6" RELATED [NeuroNames:3141] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3141 +xref: MBA:926 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0007224 ! medial entorhinal cortex + +[Term] +id: UBERON:0018263 +name: ventral zone of medial entorhinal cortex +synonym: "entorhinal area, medial part, ventral zone" EXACT [ABA:ENTmv] +synonym: "entorhinal area, medial part, ventral zone" RELATED [NeuroNames:3142] +synonym: "entorhinal area, medial part, ventral zone [Haug]" RELATED [NeuroNames:3142] +synonym: "ventral zone of the medial part of the entorhinal area" RELATED [NeuroNames:3142] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3142 +xref: MBA:934 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0007224 ! medial entorhinal cortex + +[Term] +id: UBERON:0018264 +name: dorsal lateral ganglionic eminence +def: "The dorsal region of the lateral ganglionic eminence. The cells in this area give rise to embryonic interneuron precursors that will migrate tangentially to the olfactory bulb." [GO:0021851] +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0004025 ! lateral ganglionic eminence + +[Term] +id: UBERON:0018265 +name: anterior root of zygomatic arch +def: "The anterior or rostral end of the zygomatic arch, which includes the temporal process of the zygomatic bone, but also including some of the body of the zygomatic bone. It may also include the zygomatico-temporal suture and the most rostral portion of the zygomatic process of the temporal bone." [MFMO:0000109] +xref: MFMO:0000109 +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0002500 {source="MFMO"} ! zygomatic arch + +[Term] +id: UBERON:0018266 +name: third phalanx +def: "The third phalangeal bone in a digit ray." [PHENOSCAPE:nizar] +xref: UBERONTEMP:8f369965-6ce2-4362-8b36-c0e3c7aba9a9 +is_a: UBERON:0003221 ! phalanx + +[Term] +id: UBERON:0018267 +name: atlantal spinal nerve foramen +def: "Foramen housing the root of the spinal nerve seen in the neural arch of the first vertebrae (atlas). (see Edwards 1976)" [PHENOSCAPE:nizar] +xref: UBERONTEMP:4fd613b3-3fd4-422e-a2f7-d7a2cde79d60 +is_a: UBERON:0005744 ! bone foramen +is_a: UBERON:4200105 ! nerve foramen +relationship: part_of UBERON:0005814 ! arch of atlas + +[Term] +id: UBERON:0018268 +name: type 1 adrenal tissue +def: "Adrenal tissue dispersed in clusters, found in periphery and center of adrenal gland in turtles (Yadav, 2008)." [PHENOSCAPE:nizar] +synonym: "type 1 tissue" BROAD [PHENOSCAPE:nizar] +xref: UBERONTEMP:6eccda87-a879-44fe-b2c6-ffab20dd60ee +is_a: UBERON:0018303 ! adrenal tissue + +[Term] +id: UBERON:0018269 +name: type 2 adrenal tissue +def: "Adrenal tissue aggregated in a dorsal layer covering internal cords, found in lepidosaur adrenal glands. Islets of adrenal tissue found on ventral surface of gland (barely present in squamates). See Yadav, 2008." [PHENOSCAPE:nizar] +synonym: "type 2 tissue" BROAD [PHENOSCAPE:nizar] +xref: UBERONTEMP:05a9169f-4c7d-4ff3-a786-48f9252ed6b9 +is_a: UBERON:0018303 ! adrenal tissue + +[Term] +id: UBERON:0018270 +name: type 3 adrenal tissue +def: "Adrenal tissue found in archosaurs - tissue arranged in bands, alternating with interrenal cords (Yadav, 2008)" [PHENOSCAPE:nizar] +synonym: "type 3 tissue" BROAD [PHENOSCAPE:nizar] +xref: UBERONTEMP:0022c3d9-8716-4da7-aed3-5ca1d6ad1f35 +is_a: UBERON:0018303 ! adrenal tissue + +[Term] +id: UBERON:0018271 +name: type 4 adrenal tissue +def: "In mammals, adrenal tissue has a cortex and medulla creating a composite adrenal gland (Kardong 2012)" [PHENOSCAPE:nizar] +synonym: "type 4 tissue" BROAD [PHENOSCAPE:nizar] +xref: UBERONTEMP:1ae042ee-fe94-41bb-ad04-3dbbf9de8622 +is_a: UBERON:0018303 ! adrenal tissue + +[Term] +id: UBERON:0018272 +name: apex of paracone +def: "The highest elevation of the paracone on a molariform tooth." [PHENOSCAPE:alex] +xref: UBERONTEMP:78630a15-e3fb-49ab-8cf5-22f3a640a2c7 +is_a: UBERON:0003678 ! tooth apex +relationship: part_of UBERON:0018288 ! paracone + +[Term] +id: UBERON:0018273 +name: caniniform region +def: "The anterior region of the maxillary tooth row, if that tooth row contains teeth that are substantially over the premaxillary teeth (see Laurin and Reisz 1995)" [PHENOSCAPE:alex] +xref: UBERONTEMP:e6de828b-9063-4e42-848b-ae9d4bdb7161 +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:2001978 ! maxillary tooth row + +[Term] +id: UBERON:0018274 +name: postcingulum of deciduous premolar 5 +def: "A postcingulum found on deciduous premolar 5" [PHENOSCAPE:alex] +synonym: "dP5 postcingulum" EXACT [] +xref: UBERONTEMP:122547c2-0bd1-434b-ba32-7c40cd49772d +is_a: UBERON:0018290 ! postcingulum +intersection_of: UBERON:0018290 ! postcingulum +intersection_of: part_of UBERON:0018375 ! deciduous premolar 5 +relationship: part_of UBERON:0018375 ! deciduous premolar 5 + +[Term] +id: UBERON:0018275 +name: posthypocrista of deciduous premolar 5 +def: "A posthypocrista found on deciduous premolar 5" [PHENOSCAPE:alex] +synonym: "dP5 posthypocrista" EXACT [] +xref: UBERONTEMP:dcecd800-316d-4d72-93fa-0c66f7bb6982 +is_a: UBERON:0018292 ! posthypocrista +intersection_of: UBERON:0018292 ! posthypocrista +intersection_of: part_of UBERON:0018375 ! deciduous premolar 5 +relationship: part_of UBERON:0018375 ! deciduous premolar 5 + +[Term] +id: UBERON:0018276 +name: egg tooth +def: "A protuberence or true tooth that is used during hatching to break the eggshell." [PHENOSCAPE:alex] +xref: Egg:tooth +is_a: UBERON:0003913 ! tooth-like structure + +[Term] +id: UBERON:0018277 +name: calcareous egg tooth +def: "Tooth used to break the eggshell, that is shed soon after hatching. In lepidosaurs, a true tooth that is shed soon after hatching." [PHENOSCAPE:alex] +xref: UBERONTEMP:1dda372d-155b-4362-9858-bf816ab51d78 +is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0018276 ! egg tooth + +[Term] +id: UBERON:0018278 +name: epidermal egg tooth +def: "Epidermal outgrowth that facilitates breaking of the eggshell in archosaurs and monotremes." [PHENOSCAPE:alex] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0018276 ! egg tooth +intersection_of: UBERON:0018276 ! egg tooth +intersection_of: part_of UBERON:0001003 ! skin epidermis +relationship: part_of UBERON:0001003 ! skin epidermis +relationship: present_in_taxon NCBITaxon:8492 +relationship: present_in_taxon NCBITaxon:9255 + +[Term] +id: UBERON:0018279 +name: hypoconid +def: "The labial most of three cusps on the talonoid (posterior) end of lower molariform teeth. (modified from http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure/)" [PHENOSCAPE:alex] +xref: UBERONTEMP:af7baeed-9ce1-4f9b-87d2-a1ee4f414cba +is_a: UBERON:0006844 ! cusp of tooth +relationship: part_of UBERON:0013164 ! molariform tooth + +[Term] +id: UBERON:0018280 +name: obsolete lingual cusp of tooth +is_obsolete: true +replaced_by: UBERON:0016929 + +[Term] +id: UBERON:0018281 +name: lower deciduous premolar 5 +def: "Fifth premolar (counting anteroposteriorly ) in the lower jaw." [PHENOSCAPE:alex] +xref: UBERONTEMP:ebd28885-699a-4637-9112-4ff68ddb6299 +is_a: UBERON:0017272 ! lower primary premolar tooth +is_a: UBERON:0018375 ! deciduous premolar 5 +intersection_of: UBERON:0018375 ! deciduous premolar 5 +intersection_of: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0018282 +name: lower molar 3 +def: "Third molar (counting anteroposteriorly) in the lower jaw." [PHENOSCAPE:alex] +synonym: "lower wisdom tooth" RELATED [] +synonym: "wisdom tooth" RELATED [PHENOSCAPE:alex] +xref: UBERONTEMP:d55a3eec-6055-46eb-84c5-0e03f25b0122 +xref: Wisdom:tooth +is_a: UBERON:0003667 ! lower jaw molar +is_a: UBERON:0018377 ! molar tooth 3 +intersection_of: UBERON:0018377 ! molar tooth 3 +intersection_of: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0018283 +name: lower pharyngobranchial toothplate +def: "Pharyngeal toothplate of the lower jaw region; typically associated with ceratobranchial 5 element." [PHENOSCAPE:alex] +synonym: "lower pharyngeal toothplate" EXACT [PHENOSCAPE:alex] +xref: UBERONTEMP:25ba6edf-9fd6-45cc-ad06-7952cb6cd227 +is_a: UBERON:2001647 ! pharyngeal tooth plate +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton + +[Term] +id: UBERON:0018284 +name: lower premolar 1 +def: "First premolar (counting anteroposteriorly ) in the lower jaw." [PHENOSCAPE:alex] +xref: UBERONTEMP:31f522c3-c02f-42a7-b998-4881dffb8536 +is_a: UBERON:0016943 ! lower premolar tooth +is_a: UBERON:0018294 ! premolar 1 +intersection_of: UBERON:0018294 ! premolar 1 +intersection_of: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0018285 +name: lower premolar 2 +def: "Second premolar (counting anteroposteriorly ) in the lower jaw." [PHENOSCAPE:alex] +xref: UBERONTEMP:51fc0a23-6be1-4341-9048-34863ba2cadd +is_a: UBERON:0016943 ! lower premolar tooth +is_a: UBERON:0018640 ! premolar 2 +intersection_of: UBERON:0018640 ! premolar 2 +intersection_of: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0018286 +name: molar 1 posteroloph +def: "Posteroloph found on the first molar tooth." [PHENOSCAPE:alex] +synonym: "M1 posteroloph" EXACT [1] +xref: UBERONTEMP:b63c2cf1-c60f-46f2-b4e4-64a17bf18b6d +is_a: UBERON:0018291 ! posteroloph +intersection_of: UBERON:0018291 ! posteroloph +intersection_of: part_of UBERON:0018376 ! molar tooth 1 +relationship: part_of UBERON:0018376 ! molar tooth 1 + +[Term] +id: UBERON:0018287 +name: premolar 1 hypoconoid +def: "Hypoconid found on the first premolar tooth." [PHENOSCAPE:alex] +synonym: "p1 hypoconoid" EXACT [] +xref: UBERONTEMP:518a52d0-1c9b-4d23-922c-d5045791bcf0 +is_a: UBERON:0018279 ! hypoconid +intersection_of: UBERON:0018279 ! hypoconid +intersection_of: part_of UBERON:0018294 ! premolar 1 +relationship: part_of UBERON:0018294 ! premolar 1 + +[Term] +id: UBERON:0018288 +name: paracone +def: "The anterior cusp along the labial margin seen in the molar or premolar teeth of mammals. (modified from http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure/)" [PHENOSCAPE:alex] +xref: UBERONTEMP:0805962a-bdbc-4314-8920-327e041a406b +is_a: UBERON:0006844 ! cusp of tooth +relationship: part_of UBERON:0013164 ! molariform tooth + +[Term] +id: UBERON:0018289 +name: paracristid +def: "A crest running along the labial margin of molarifomr teeth of mammals. (modified from http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure/)" [PHENOSCAPE:alex] +xref: UBERONTEMP:2920b9ce-f709-4fe2-ad14-e6726227d3ae +is_a: UBERON:0016930 ! ridge of tooth +relationship: part_of UBERON:0013164 ! molariform tooth + +[Term] +id: UBERON:0018290 +name: postcingulum +def: "A shelf like ridge on the posterior (distal) outside edge of the upper molariform teeth. (modified from http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure/)" [PHENOSCAPE:alex] +xref: UBERONTEMP:65b40ec3-fa39-4802-bfa8-fb6145400c29 +is_a: UBERON:0016930 ! ridge of tooth +relationship: part_of UBERON:0013164 ! molariform tooth + +[Term] +id: UBERON:0018291 +name: posteroloph +def: "A shelf like ridge on the outside of the upper molariform teeth. (modified from http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure/)" [PHENOSCAPE:alex] +xref: UBERONTEMP:09a9f799-951b-46b4-8dc2-d4d486ff6542 +is_a: UBERON:0016930 ! ridge of tooth +relationship: part_of UBERON:0013164 ! molariform tooth + +[Term] +id: UBERON:0018292 +name: posthypocrista +def: "A crest on the hypoconid of molariform teeth. (modified from http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure/)" [PHENOSCAPE:alex] +xref: UBERONTEMP:071e0de7-9e35-437a-b985-d9ec084e5a42 +is_a: UBERON:0016930 ! ridge of tooth +relationship: part_of UBERON:0013164 ! molariform tooth + +[Term] +id: UBERON:0018293 +name: precingulum +def: "A shelf like ridge on the proximal (mesial) outside edge of the upper molariform teeth. (modified from http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure/)" [PHENOSCAPE:alex] +xref: UBERONTEMP:4203b16d-bb40-4289-aaae-363363d7db6f +is_a: UBERON:0016930 ! ridge of tooth +relationship: part_of UBERON:0013164 ! molariform tooth + +[Term] +id: UBERON:0018294 +name: premolar 1 +def: "First premolar (counting anteroposteriorly) in the jaw." [PHENOSCAPE:alex] +synonym: "first premolar tooth" EXACT [] +synonym: "p1" RELATED ABBREVIATION [] +xref: http://www.snomedbrowser.com/Codes/Details/422368002 +xref: UBERONTEMP:df0eb189-0c10-493d-b5ce-8fd091e09456 +is_a: UBERON:0007120 ! premolar tooth + +[Term] +id: UBERON:0018295 +name: preprotocrista +def: "An enamel ridge joining the protocone and the paracone on the occlusal surface of a maxillary molar." [http://www.oxfordreference.com/view/10.1093/oi/authority.20110803100343456, PHENOSCAPE:curators] +xref: UBERONTEMP:1483131a-b5c4-484a-8ffa-0dc5e0a5ef34 +is_a: UBERON:0016930 ! ridge of tooth +relationship: part_of UBERON:0013164 ! molariform tooth + +[Term] +id: UBERON:0018296 +name: replacement tooth +def: "Tooth (often obscured from view) in a 'waiting' position that will replace an existing tooth (i.e. a tooth that is well visible in the jaw)" [PHENOSCAPE:Nizar] +xref: UBERONTEMP:dfc468f8-45f8-486f-b943-e4284d5055e8 +is_a: UBERON:0001091 ! calcareous tooth + +[Term] +id: UBERON:0018297 +name: resorption pit +def: "A pit formed in an existing functional tooth, causing resorption of the surrounding dentine and periodontal tissues. (modified from LeBlanc and Reisz 2013, see figures 8, 10 for more details)" [PHENOSCAPE:curators] +xref: UBERONTEMP:4fffbeb1-0774-4eb2-860e-5b50dece221c +is_a: UBERON:0002553 ! anatomical cavity +relationship: part_of UBERON:0001708 ! jaw skeleton + +[Term] +id: UBERON:0018298 +name: stylocone +def: "Cusp found on a platform that is buccaal and mesial to the meta and paracones. Modified from Kermack 1967. Molar evolution in Mesozoic mammals" [PHENOSCAPE:Alex] +xref: UBERONTEMP:1e10c6fb-a36f-4151-957b-7a0aaf6816ba +is_a: UBERON:0006844 ! cusp of tooth +relationship: part_of UBERON:0013164 ! molariform tooth + +[Term] +id: UBERON:0018299 +name: mandibular symphyseal tooth +def: "Tooth of the lower jaw that is adjacent to the mandibular symphysis" [PHENOSCAPE:curators] +synonym: "lower jaw symphyseal tooth" EXACT [] +synonym: "symphyseal tooth" BROAD [] +xref: UBERONTEMP:2f99ad4b-d842-4ae9-8886-87ee98811fe5 +is_a: UBERON:0003268 ! tooth of lower jaw +is_a: UBERON:0004756 ! dermal skeletal element +intersection_of: UBERON:0001091 ! calcareous tooth +intersection_of: part_of UBERON:0018542 ! mandibular symphyseal region +relationship: adjacent_to UBERON:0006606 ! mandibular symphysis +relationship: part_of UBERON:0018542 ! mandibular symphyseal region + +[Term] +id: UBERON:0018300 +name: upper canine 1 +def: "first canine (counting anteroposteriorly) in the upper jaw." [PHENOSCAPE:Alex] +synonym: "UC1" EXACT ABBREVIATION [] +synonym: "upper canine UC1" EXACT [] +xref: UBERONTEMP:14c28c28-237e-435d-9883-8dff529e64cc +is_a: UBERON:0018621 ! upper canine tooth + +[Term] +id: UBERON:0018301 +name: upper deciduous premolar 5 +def: "Fifth premolar (counting anteroposteriorly ) in the upper jaw." [PHENOSCAPE:Alex] +xref: UBERONTEMP:ae0e62b6-59ad-4c21-8e15-b67570c5137a +is_a: UBERON:0017271 ! upper primary premolar tooth +is_a: UBERON:0018375 ! deciduous premolar 5 +intersection_of: UBERON:0018375 ! deciduous premolar 5 +intersection_of: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0018302 +name: upper molar 1 +def: "first molar (counting anteroposteriorly) in the upper jaw." [PHENOSCAPE:Alex] +xref: UBERONTEMP:12acbe6c-9036-48e3-b1a0-1f2fdaa0241d +is_a: UBERON:0003666 ! upper jaw molar +is_a: UBERON:0018376 ! molar tooth 1 +intersection_of: UBERON:0018376 ! molar tooth 1 +intersection_of: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0018303 +name: adrenal tissue +def: "Tissue that is part of some adrenal gland" [PHENOSCAPE:Alex] +synonym: "adrenal gland tissue" EXACT [ncithesaurus:Adrenal_Gland_Tissue] +xref: NCIT:C32051 +xref: UBERONTEMP:a7bf197b-0db2-467e-824e-be45b39e2672 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0000479 ! tissue +intersection_of: part_of UBERON:0002369 ! adrenal gland +relationship: part_of UBERON:0002369 ! adrenal gland + +[Term] +id: UBERON:0018304 +name: post-axial region of pectoral appendage +def: "Anatomical region lying to the posteiror or ventral side of the metapterygial axis." [PHENOSCAPE:Nizar] +synonym: "post-axial region" BROAD [] +xref: UBERONTEMP:498d2b0d-6e51-4d20-ba52-8d409676994e +is_a: UBERON:0010538 ! paired limb/fin segment +relationship: part_of UBERON:0004710 ! pectoral appendage + +[Term] +id: UBERON:0018305 +name: bicipital surface +def: "region of the humerus associated with the biceps attachment areas" [PHENOSCAPE:Nizar] +xref: UBERONTEMP:1aa93660-3c3d-4aff-94fa-93ea38c82df8 +is_a: UBERON:0036215 ! anatomical surface region +relationship: part_of UBERON:0000976 ! humerus + +[Term] +id: UBERON:0018306 +name: bulge +def: "expanded and swollen region of a surface that is otherwise relatively flat" [PHENOSCAPE:Nizar] +subset: upper_level +xref: UBERONTEMP:dfedeba6-f608-4adc-9e69-b1169f6b0fb3 +is_a: UBERON:0003102 ! surface structure + +[Term] +id: UBERON:0018307 +name: keel +def: "Ridge shaped projection, similar to the keel of a boat" [PHENOSCAPE:Nizar] +subset: upper_level +xref: UBERONTEMP:ab8d6483-aa3e-480c-a8dc-339e727946fa +is_a: UBERON:0004529 ! anatomical projection + +[Term] +id: UBERON:0018308 +name: caudal melanophore spot +def: "distinct colored area on the caudal region of an organism, similar in shape to a spot, i.e. circular." [PHENOSCAPE:Nizar] +synonym: "caudal spot" BROAD [] +xref: UBERONTEMP:a8fd6c8c-5029-4740-8e0c-99856641de75 +is_a: UBERON:2002283 ! melanophore spot + +[Term] +id: UBERON:0018309 +name: central figure of scute +def: "Anatomical structure consisting of a pattern of ridges on an osteoderm." [PHENOSCAPE:curators] +synonym: "central figure" EXACT [] +xref: UBERONTEMP:56dad3b4-46b2-4823-a7b2-88a10ef98ae3 +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0008201 ! scute + +[Term] +id: UBERON:0018310 +name: cephalic dermal scale +def: "A dermal scale that is found in the head region" [PHENOSCAPE:Alex] +synonym: "cephalic scale" BROAD [] +xref: UBERONTEMP:94f0b1bc-80a4-4342-8b3b-c101c07a8f6d +is_a: UBERON:0007380 ! dermal scale +is_a: UBERON:3000972 ! head external integument structure +intersection_of: UBERON:0007380 ! dermal scale +intersection_of: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0018311 +name: obsolete cervical rib +def: "Rib attached to the cervical vertebrae." [PHENOSCAPE:Alex] +is_obsolete: true +replaced_by: UBERON:0018144 + +[Term] +id: UBERON:0018312 +name: cheek scale +def: "A scale part of the cheek scale row." [PHENOSCAPE:Alex] +xref: UBERONTEMP:ad1e8bd6-4d61-4902-aeb8-3f72123c14df +is_a: UBERON:0002542 ! scale +intersection_of: UBERON:0002542 ! scale +intersection_of: part_of UBERON:0018313 ! cheek scale row +relationship: part_of UBERON:0018313 ! cheek scale row + +[Term] +id: UBERON:0018313 +name: cheek scale row +def: "A row of scales foudn in the cheek region of the head of an organism." [PHENOSCAPE:Alex] +xref: UBERONTEMP:27bd04e2-8af0-496b-871b-b54a50c35aac +is_a: UBERON:4300006 ! scale row +intersection_of: UBERON:4300006 ! scale row +intersection_of: part_of UBERON:0001567 ! cheek +relationship: part_of UBERON:0001567 ! cheek + +[Term] +id: UBERON:0018314 +name: choanal groove +def: "grooves on the palatine bone which denote the passage of the choana or internal naris" [PHENOSCAPE:Alex] +xref: UBERONTEMP:40f3ccb2-6447-4d14-b3db-b1c4bb41464b +is_a: UBERON:0006846 ! surface groove +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0001682 ! palatine bone + +[Term] +id: UBERON:0018315 +name: clasper plate +def: "Pelvic clasper organs that have been modified into a flattened structure" [PHENOSCAPE:Alex] +xref: UBERONTEMP:775935c7-8289-426c-8c03-c1f82348dbc5 +is_a: UBERON:0010518 ! pelvic fin clasper + +[Term] +id: UBERON:0018316 +name: cuboid facet of calcaneum +def: "Facet on the anterior surface of the calcaneus (as called calcaneum) for the articulation of the cuboid bone" [PHENOSCAPE:Alex] +xref: UBERONTEMP:a3287636-2522-466e-9310-942cc1f3cd35 +is_a: UBERON:4200230 ! surface of bone +is_a: UBERON:4300038 ! facet +relationship: part_of UBERON:0001450 ! calcaneus + +[Term] +id: UBERON:0018317 +name: dorsal osteoderm +def: "Osteoderm found on the dorsal surface of an organisms." [PHENOSCAPE:Alex] +xref: UBERONTEMP:2e068f89-ba31-4035-b718-01a2728a7346 +is_a: UBERON:0008201 ! scute +intersection_of: UBERON:0008201 ! scute +intersection_of: part_of UBERON:0001137 ! dorsum +relationship: part_of UBERON:0001137 ! dorsum + +[Term] +id: UBERON:0018318 +name: entocarotid fossa +def: "A depression on the lateral surface of the braincase posterior to the Vidian canal (Conrad 2008)" [PHENOSCAPE:Alex] +xref: UBERONTEMP:0ac04df7-2f9b-4c8a-bb52-f46b396e82b9 +is_a: UBERON:0008789 ! cranial fossa +relationship: part_of UBERON:0004746 ! prootic bone + +[Term] +id: UBERON:0018319 +name: extramural oviduct +def: "Section of the oviduct external to the uterine wall." [PHENOSCAPE:Alex] +xref: UBERONTEMP:a9598e4a-b173-43af-96ef-20f80182c8fd +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0000993 ! oviduct + +[Term] +id: UBERON:0018320 +name: flexor sesamoid +def: "A sesamoid bone located near or in the flexor musculature of a joint." [PHENOSCAPE:alex] +xref: UBERONTEMP:d4bf48eb-10b0-4a4b-982a-55fe6154c741 +is_a: UBERON:0001479 ! sesamoid bone +relationship: adjacent_to UBERON:0000366 ! flexor muscle + +[Term] +id: UBERON:0018321 +name: foramen for glossopharyngeal nerve +def: "Foramen that allows the passge of the glossopharyngeal nerve (cranial nerve IX)." [PHENOSCAPE:alex] +xref: UBERONTEMP:9ca0bda7-9111-4f59-bc72-5d47bc3d7d61 +is_a: UBERON:0013685 ! foramen of skull +intersection_of: UBERON:0013685 ! foramen of skull +intersection_of: conduit_for UBERON:0001649 ! glossopharyngeal nerve +relationship: conduit_for UBERON:0001649 ! glossopharyngeal nerve +relationship: part_of UBERON:0003128 ! cranium + +[Term] +id: UBERON:0018322 +name: fourth phalanx +def: "fourth most proximal phalanx in manual or pedal digits." [PHENOSCAPE:alex] +xref: UBERONTEMP:a8b5fbe4-0d00-4464-97ee-81ffd58a44f8 +is_a: UBERON:0003221 ! phalanx + +[Term] +id: UBERON:0018323 +name: hyoid articular area +def: "Area on the otic capsule for the articulation of the hyoid" [PHENOSCAPE:alex] +xref: UBERONTEMP:e1c1764a-61b5-4dce-8a59-7ca5a9de0a0b +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004905 ! articulation +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004637 ! otic capsule + +[Term] +id: UBERON:0018324 +name: hypochordal radial +def: "Caudal fin radial element located ventral to the notochord" [PHENOSCAPE:Wasila] +xref: UBERONTEMP:df278a3c-58fe-4442-9611-22473117a50d +is_a: UBERON:0018325 ! caudal fin radial element + +[Term] +id: UBERON:0018325 +name: caudal fin radial element +def: "Radial element that is part of the caudal fin." [PHENOSCAPE:curators] +is_a: UBERON:2105225 ! median fin radial element +intersection_of: UBERON:2100271 ! radial element +intersection_of: part_of UBERON:4000164 ! caudal fin +relationship: part_of UBERON:4000167 ! caudal fin skeleton + +[Term] +id: UBERON:0018326 +name: ilioischiadic foramen +def: "Situated just caudal to the acetabulum, the foramen is bound dorsally by the illium and ventrally by the ischium. The foramen transmitts the ischiadic nerves and vessels (Baumel et al. 1993)" [PHENOSCAPE:alex] +xref: UBERONTEMP:63e09c69-ac98-49ba-b232-2da5c7b19019 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005744 ! bone foramen +intersection_of: UBERON:0005744 ! bone foramen +intersection_of: conduit_for UBERON:0001322 ! sciatic nerve +relationship: adjacent_to UBERON:0001273 ! ilium +relationship: adjacent_to UBERON:0001274 ! ischium +relationship: conduit_for UBERON:0001322 ! sciatic nerve +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton + +[Term] +id: UBERON:0018327 +name: obsolete incisive process of premaxilla +is_obsolete: true +replaced_by: UBERON:0017249 + +[Term] +id: UBERON:0018328 +name: incisura fossa +def: "The condyloid fossa on the cranial aspect of the Atlas my be perforated (foramen fossa) or have an open dorsal notch (Incisura fossa) in which the apex of the dens rides. (From Baumel et al. 1993)" [PHENOSCAPE:alex] +xref: UBERONTEMP:9976c3c2-76ad-4a5a-8eeb-453bf0b47aec +is_a: UBERON:0004704 ! bone fossa +is_a: UBERON:0010276 ! space in vertebral column +relationship: part_of UBERON:0001092 ! vertebral bone 1 + +[Term] +id: UBERON:0018329 +name: interpterygoid region +def: "The region on the palate corresponding to the location of the pterygoid bone, if present and between the palatine bones and the parasphenoid if not." [PHENOSCAPE:alex] +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0012072 ! palatal part of dermatocranium + +[Term] +id: UBERON:0018330 +name: interpterygoid vacuity +def: "Open space between on the palate between the pteryogoid bone and the parasphenoid" [PHENOSCAPE:alex] +xref: UBERONTEMP:c459b036-bbb9-4e8b-8a2b-530b761b6603 +is_a: UBERON:0004704 ! bone fossa +relationship: part_of UBERON:0012072 ! palatal part of dermatocranium + +[Term] +id: UBERON:0018331 +name: intraramal joint +def: "A joint in the lower jaw that enhances kinesis and for swallowing prey. Allows enhanced mobility and intraramal bending to increase gape." [PHENOSCAPE:alex] +xref: UBERONTEMP:0f283c26-49e5-42e7-8ae1-e391eda7e4ce +is_a: UBERON:0002217 ! synovial joint +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0003278 ! skeleton of lower jaw + +[Term] +id: UBERON:0018332 +name: jugal bar +def: "elongate bar consisting of fused quadratojugal and jugal and connecting the maxilla to the quadrate" [PHENOSCAPE:Nizar] +synonym: "angulus tomialis" EXACT [https://doi.org/10.1371/journal.pone.0026350] +xref: UBERONTEMP:1f2675bb-5831-4804-9e83-de3be1eb2a73 +is_a: UBERON:0005913 ! zone of bone organ +relationship: connects UBERON:0002397 ! maxilla +relationship: connects UBERON:0006597 ! quadrate bone +relationship: has_fused_element UBERON:0001683 ! jugal bone +relationship: has_fused_element UBERON:0011267 ! quadratojugal bone + +[Term] +id: UBERON:0018333 +name: labial cartilage +def: "Distinct cartilage around the jaws of elasmobranchs" [PHENOSCAPE:Nizar] +xref: UBERONTEMP:dab1de8a-9ec0-4e71-b7ec-8507bcbaccad +is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0013765 ! digestive system element +relationship: part_of UBERON:0003278 ! skeleton of lower jaw + +[Term] +id: UBERON:0018334 +name: lateral condyle of quadrate +def: "Condyle on the lateral side of the quadrate" [PHENOSCAPE:Nizar] +xref: UBERONTEMP:65292031-1a72-4f0a-a385-a479e6a8625f +is_a: UBERON:0009979 ! condyle +is_a: UBERON:0010313 ! neural crest-derived structure +disjoint_from: UBERON:0018337 {source="lexical"} ! medial condyle of quadrate +relationship: part_of UBERON:0006597 ! quadrate bone + +[Term] +id: UBERON:0018335 +name: lateral dorsal aorta canal +def: "One of the branches of the dorsal aorta, after it enters the aortic canal" [PHENOSCAPE:Nizar] +xref: UBERONTEMP:6f18830d-27e9-4de6-a1a6-34253907bbfe +is_a: UBERON:0003513 ! trunk blood vessel +is_a: UBERON:0004573 ! systemic artery +relationship: part_of UBERON:0005805 ! dorsal aorta + +[Term] +id: UBERON:0018336 +name: maxillary shank +def: "The triangular shaped posterior fold at the angle of the mouth. From Chakrabarty 2006" [PHENOSCAPE:alex] +xref: UBERONTEMP:d176af29-e3f6-4cfa-a8ee-d26740652bfd +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0002397 ! maxilla + +[Term] +id: UBERON:0018337 +name: medial condyle of quadrate +def: "The medialmost condyle on the distal region of the quadrate, in contact with the pterygoid." [PHENOSCAPE:alex] +xref: UBERONTEMP:0261cdfc-5e94-4560-8b5c-488f9f2194ca +is_a: UBERON:0009979 ! condyle +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006597 ! quadrate bone + +[Term] +id: UBERON:0018338 +name: medial cotyla +def: "The medialmost of the cotyla of the lower jaw, for articulation with the cranium." [PHENOSCAPE:alex] +xref: UBERONTEMP:2d15fa5d-566b-4428-83e4-753ae839a965 +is_a: UBERON:4200050 ! cotyla +relationship: part_of UBERON:0003278 ! skeleton of lower jaw + +[Term] +id: UBERON:0018339 +name: metotic fissure +def: "An embryonic fissure between the otic capsule and the arches which develop into the occipital bones. The fissure may persist into adulthood. It is also referred to as the 'lateral otic fissure' The metotic fissure opens into the vestibular fontanelle, if the fontanelle is present. (Johanson et al. (2003)). Otherwise it opens to the metotic foramen." [http://palaeos.com/vertebrates/glossary/glossaryM.html, PHENOSCAPE:alex] +xref: UBERONTEMP:41980771-8a82-40d2-877e-3156cc80857b +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0006846 ! surface groove +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004637 ! otic capsule + +[Term] +id: UBERON:0018340 +name: midbody melanophore spot +def: "distinct colored area on the midbody region of an organism, similar in shape to a spot, i.e. circular." [PHENOSCAPE:alex] +synonym: "midbody spot" EXACT [] +xref: UBERONTEMP:49c8535b-5a5e-42ca-8c77-945b254605f5 +is_a: UBERON:2002283 ! melanophore spot + +[Term] +id: UBERON:0018341 +name: nasal process of premaxilla +def: "A bony projection of the premaxilla that extends cadually and separates the nasal bones." [PHENOSCAPE:alex] +xref: UBERONTEMP:18a5dd1b-1213-471f-9a0b-06190b1ecf2c +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002244 ! premaxilla + +[Term] +id: UBERON:0018342 +name: nuchal hump +def: "Dorsal swelling on the head. Found in cichlid fish. Often only in males and during breeding season, but not exclusively so." [PHENOSCAPE:Wasila] +xref: UBERONTEMP:042b87f9-5e1a-4070-9c56-1e79cd474cde +is_a: UBERON:0003102 ! surface structure +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0018343 +name: oviduct mucosal fold +def: "The wall of the fallopian tube includes an elaborately folded mucosa (endosalpinx) surrounded by a muscularis (myosalpinx). The mucosa is lined by a ciliated columnar epithelium with secretory cells, and is folded out into the lumen so that an ovum in the lumen will always be close to the cilia for transport to the uterus." [http://www.siumed.edu/~dking2/erg/oviduct.htm, PHENOSCAPE:alex] +synonym: "endosalpinx" EXACT [PHENOSCAPE:alex] +synonym: "mucosal fold of fallopian tube" RELATED [FMA:18537] +synonym: "mucosal fold of oviduct" RELATED [FMA:18537] +xref: FMA:18537 +xref: UBERONTEMP:7f3c6bb1-52c7-4392-8944-01182d25a351 +is_a: UBERON:0019042 ! reproductive system mucosa +relationship: part_of UBERON:0000993 ! oviduct + +[Term] +id: UBERON:0018344 +name: parastyle +def: "An anterior cusp on the stylar shelf of the tooth" [PHENOSCAPE:alex] +xref: UBERONTEMP:3430efdb-ae20-4568-bce3-888d86cf75ab +is_a: UBERON:0006844 ! cusp of tooth +relationship: part_of UBERON:0018345 ! stylar shelf + +[Term] +id: UBERON:0018345 +name: stylar shelf +def: "The stylar shelf is an an expansion of the cingulum; it often bears small cusps (each with its own name...)." [http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure, PHENOSCAPE:curators] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0013164 ! molariform tooth + +[Term] +id: UBERON:0018346 +name: parietal notch +def: "A pronounced notch or cavity in the lateral face of the parietal." [PHENOSCAPE:alex] +xref: UBERONTEMP:2937dfe8-d5be-48e6-a67e-2f1c11dbc7d5 +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0000210 ! tetrapod parietal bone + +[Term] +id: UBERON:0018347 +name: pars canalicularis of petrosal +def: "." [PHENOSCAPE:alex] +xref: UBERONTEMP:5b20659c-8d12-4809-9f5a-ad4bb047fc65 +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0018348 ! petrosal bone + +[Term] +id: UBERON:0018348 +name: petrosal bone +def: "." [PHENOSCAPE:alex] +is_a: UBERON:0004766 ! cranial bone + +[Term] +id: UBERON:0018349 +name: pharyngeal apophysis +def: "Ventral process on the neurocranium for the articulation of upper pharyngeal bones. It is variably composed of the parasphenoid, basioccipital, and prootic depending on the species. From: Greenwood, PH (1978). A review of the pharyngeal hypophysis and its significance in the classification of African cichlid fishes. Bull. Br. Mus. Nat. Hist. (Zool.) 33: 297-323." [PHENOSCAPE:Wasila] +synonym: "neurocranium apophysis" EXACT [PHENOSCAPE:Wasila] +xref: UBERONTEMP:131c5051-fb07-4138-9f06-eae8880a6338 +is_a: UBERON:0006770 ! apophysis +relationship: part_of UBERON:0001703 ! neurocranium + +[Term] +id: UBERON:0018351 +name: precerebral fontanelle +def: "The lack of chondrification of the anterior wall of the cranial cavity in front of the pineal foramen.....(Hanken and Hall)" [PHENOSCAPE:Alex] +xref: UBERONTEMP:43fdac75-44ba-45b0-bc85-bbd53076852f +is_a: UBERON:3000051 ! braincase and otic capsule opening + +[Term] +id: UBERON:0018352 +name: prismatic cartilage +def: "cartilage arranged into tesserae, blocks of calcified cartilage that fit together as tiles on a floor form a mosaic. Found only in chondrichthyans. Reference: A. Peter Klimley. 2013. The Biology of Sharks and Rays. University of Chicago Press." [PHENOSCAPE:Wasila] +synonym: "prismatic calcified tissue" EXACT [PHENOSCAPE:Wasila] +xref: UBERONTEMP:10e29a7f-5845-4c48-9d85-1043712ad536 +is_a: UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0018353 +name: quadrate condyle +def: "The convex articular surface on the qudrate, part of the craniomandibular joint." [PHENOSCAPE:Alex] +xref: UBERONTEMP:24ee2473-1c50-4d40-a2e9-5ddd3b2970ec +is_a: UBERON:0009979 ! condyle +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0009979 ! condyle +intersection_of: part_of UBERON:0006597 ! quadrate bone +intersection_of: part_of UBERON:0011171 ! joint connecting upper and lower jaws +relationship: part_of UBERON:0006597 ! quadrate bone +relationship: part_of UBERON:0011171 ! joint connecting upper and lower jaws + +[Term] +id: UBERON:0018354 +name: recessus vena jugularis +def: "As defined here, this refers to a depression on the lateral surface of the braincase posterior to the Vidian canal as opposed to the carotid fossa...(Conrad 2008)" [PHENOSCAPE:Alex] +xref: UBERONTEMP:65e056b3-ec2f-4eba-a8e5-c12b137f1060 +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton + +[Term] +id: UBERON:0018355 +name: rictal bristle +def: "Rictal bristles project from the beak of many insect-eating birds, including flycatchers, nightjars and even the American Robin. They are believed to provide protection for the bird's eyes as it consumes its wriggly prey. The bristles may also provide tactile feedback, like the whiskers on a dog or cat. from http://www.birds.cornell.edu/AllAboutBirds/studying/feathers/feathers/document_view" [PHENOSCAPE:Alex] +xref: UBERONTEMP:75dafdaf-a59c-42ab-94e6-4816a29edb2f +is_a: UBERON:0000022 ! feather +relationship: part_of UBERON:0005094 ! beak + +[Term] +id: UBERON:0018356 +name: rostral entotympanic element +def: "An entotympanic that arises in forward part of tympanic floor. It may be intimately fused witA cartilage of tube during development(MacPhee (1981: 62)) in contrast to a caudal entotympanic arising in the rear tympanic floor. From O'Leary et al. 2012" [PHENOSCAPE:Alex] +xref: UBERONTEMP:c5825cfa-edc2-4717-8625-90ac3f8b6dd3 +is_a: UBERON:0013190 ! entotympanic bone + +[Term] +id: UBERON:0018357 +name: sensory pore +def: "." [PHENOSCAPE:Wasila] +synonym: "sensory canal pore" EXACT [PHENOSCAPE:Wasila] +xref: UBERONTEMP:021ff296-2e02-4da5-af3b-b3e7220ac03b +is_a: UBERON:0008915 ! pore +intersection_of: UBERON:0008915 ! pore +intersection_of: part_of UBERON:0001032 ! sensory system +relationship: part_of UBERON:0001032 ! sensory system + +[Term] +id: UBERON:0018358 +name: spina externa +def: "A median bony point projecting from the anterior and ventral margin of the sternum of a bird. From http://www.merriam-webster.com/dictionary/spina%20externa" [PHENOSCAPE:Alex] +xref: UBERONTEMP:0bc2755c-6069-42f5-a9f4-b00b7b3cc25a +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0000975 ! sternum + +[Term] +id: UBERON:0018359 +name: subolfactory process +def: "The ventral portion of the frontals which forms part of the lateral wall of the braincase. Modified from Lee and Caldwell 1998" [PHENOSCAPE:Alex] +xref: UBERONTEMP:41e8ff4d-2e04-4d81-8db9-a8038e63f76b +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000209 ! tetrapod frontal bone +relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton + +[Term] +id: UBERON:0018360 +name: suborbital foramen +def: "Foramen located below the orbit and forming a passageway for nerves (eg fifth cranial nerve)" [PHENOSCAPE:Nizar] +xref: UBERONTEMP:3e50fa07-b01a-491f-a67d-11f63e8cf0aa +is_a: UBERON:0013685 ! foramen of skull +relationship: conduit_for UBERON:0001785 ! cranial nerve +relationship: part_of UBERON:0003128 ! cranium + +[Term] +id: UBERON:0018361 +name: suborbital shelf +def: "On the neurocranium, a horizontal plate arising on the ventral junction of the orbital wall and basal plate on each side which extends from the nasal capsule to the otic capsule; it forms the floor of the orbit." [PHENOSCAPE:Wasila] +comment: Definition from: LJV Compagno. 2002. Sharks of the World Volume 2; FAO Species Catalogue for Fishery Purposes No. 1 +xref: UBERONTEMP:2b933bd2-0562-4624-8d49-ec5325a2da54 +is_a: UBERON:0004529 ! anatomical projection +relationship: part_of UBERON:0001703 ! neurocranium + +[Term] +id: UBERON:0018362 +name: supracondylar tubercle +def: "Anatomical projection on the distal region of the femur or humerus and close to the condyles." [PHENOSCAPE:Nizar] +comment: found on femur or humerus +xref: UBERONTEMP:f721b85c-54d3-4e89-a61e-bfddacf0fe93 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0017163 ! skin bony tubercle +relationship: part_of UBERON:0011583 ! stylopodial skeleton + +[Term] +id: UBERON:0018363 +name: obsolete supracoracoid nerve foramen +def: "Opening for the supracoracoid nerve in the supracoracoid." [PHENOSCAPE:Nizar] +xref: UBERONTEMP:8bd39461-7e48-428f-8f19-fa2700bc3796 +is_obsolete: true +replaced_by: UBERON:3000778 + +[Term] +id: UBERON:0018364 +name: suprameatal foramen +def: "Foramen in the temporal bone, adjacent to the base of the zygomatic process." [PHENOSCAPE:Nizar] +xref: UBERONTEMP:8aa1a55e-924a-46a7-82af-9e8406a5149d +is_a: UBERON:0005744 ! bone foramen +relationship: part_of UBERON:0001678 ! temporal bone + +[Term] +id: UBERON:0018365 +name: supratemporal process +def: "Process of the parietal" [PHENOSCAPE:Nizar] +xref: UBERONTEMP:4d719e1e-df5d-4735-9490-45e6e22b549a +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0000210 ! tetrapod parietal bone + +[Term] +id: UBERON:0018366 +name: supratendinal bridge +def: "ossified bridge over a tendon; Particularly, the bridge over the extensor canal at the distal end of the tibiotarsus of certain birds. The presence of the bridge and the position of the canal opening relative to the condyles may have phylogenetic significance. Ericson (1997). http://palaeos.com/vertebrates/glossary/glossarySq.html" [PHENOSCAPE:Nizar] +xref: UBERONTEMP:27dfdd96-d1ca-44b3-876b-390ed5d21c23 +is_a: UBERON:0001474 ! bone element + +[Term] +id: UBERON:0018367 +name: processus ventralis of thoracic vertebra +def: "The crest is present on the ventral side of the bodies of the thoracic vertebra (modified from Baumel et al. 1993)" [PHENOSCAPE:Alex] +synonym: "hypapophysis, crista ventralis corporis, crista ventralis, processus latus" EXACT [PHENOSCAPE:Alex] +synonym: "processus ventralis" EXACT [] +xref: NOID:1 +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0002347 ! thoracic vertebra + +[Term] +id: UBERON:0018368 +name: processus ventrolateralis of thoracic vertebra +def: "Ventrolaerally oriented, paired projections atttached to the ventrolateral border of the body of certain thoracic vertebra; the ventrolateral crest flank the crista ventralis on each side. From Baumel et al. 1993" [PHENOSCAPE:Alex] +synonym: "crista ventrolateralis, processus inferolateralis" EXACT [PHENOSCAPE:Alex] +synonym: "processus ventrolateralis" EXACT [] +xref: NOID:1 +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0002347 ! thoracic vertebra + +[Term] +id: UBERON:0018369 +name: upper lateral line +def: "dorsal sensory canal line in fish, dorsal to ventral lateral lane" [PHENOSCAPE:Nizar] +xref: UBERONTEMP:2e283d18-0137-43ce-948f-1704f1d0a0a7 +is_a: UBERON:0010202 ! lateral line + +[Term] +id: UBERON:0018370 +name: ventral lateral line +def: "ventral sensory canal line in fish, ventral to dorsal lateral lane" [PHENOSCAPE:Wasila] +xref: UBERONTEMP:61c755ec-848e-4262-89e4-be2267041e64 +is_a: UBERON:0010202 ! lateral line + +[Term] +id: UBERON:0018371 +name: ventral supracondylar tubercle +def: "tubercle on the distal humerus for the origin of the Lig. collaterale ventral of the elbow joint. Modified from Baumel et al. 1993" [PHENOSCAPE:Alex, PHENOSCAPE:Nizar] +xref: UBERONTEMP:227c8fa9-af2b-4301-9c95-641d39864df6 +is_a: UBERON:4200177 ! supracondyle tubercle + +[Term] +id: UBERON:0018372 +name: dorsal supracondylar tubercle +def: "tubercle on the dorsal border of the distal humerus, a short distance from the dorsal epicondyle, for the origin of the m extensor carpe radialis modifeid from Baumel et al. 1993" [PHENOSCAPE:Alex, PHENOSCAPE:Nizar] +is_a: UBERON:4200177 ! supracondyle tubercle + +[Term] +id: UBERON:0018373 +name: vidian canal +def: "canal for the vidian nerve" [PHENOSCAPE:Nizar] +synonym: "canalis pterygoidei" RELATED [http://en.wikipedia.org/wiki/Pterygoid_canal] +synonym: "canalis pterygoideus" RELATED [http://en.wikipedia.org/wiki/Pterygoid_canal] +synonym: "pterygoid canal" EXACT [FMA:54756] +xref: FMA:54756 +xref: Pterygoid:canal +xref: UBERONTEMP:1ab99cc2-1435-4a9f-ade0-4e3b8efc8774 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0013685 ! foramen of skull +intersection_of: UBERON:0004111 ! anatomical conduit +intersection_of: conduit_for UBERON:0018412 ! vidian nerve +relationship: conduit_for UBERON:0018412 ! vidian nerve +relationship: part_of UBERON:0010389 ! pterygoid bone + +[Term] +id: UBERON:0018374 +name: sallet +def: "A unit of the tectoral membrane that is shaped like string of flat, pearls. Modified from Manley, Fey and Popper 2008 " [ISBN:9780387714691, PHENOSCAPE:Alex] +xref: UBERONTEMP:caa10252-5f7e-4a55-a72c-cf7986a89363 +is_a: UBERON:0000063 ! organ subunit +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002233 ! tectorial membrane of cochlea +relationship: present_in_taxon NCBITaxon:35033 {source="ISBN:9780387714691"} +relationship: present_in_taxon NCBITaxon:8561 {source="ISBN:9780387714691"} + +[Term] +id: UBERON:0018375 +name: deciduous premolar 5 +synonym: "deciduous premolar 5" EXACT [] +synonym: "dP5" RELATED ABBREVIATION [] +synonym: "primary premolar 5 tooth" EXACT [] +is_a: UBERON:0017269 ! primary premolar tooth +is_a: UBERON:0018646 ! premolar tooth 5 +intersection_of: UBERON:0018646 ! premolar tooth 5 +intersection_of: part_of UBERON:0007116 ! primary dentition + +[Term] +id: UBERON:0018376 +name: molar tooth 1 +def: "The molar tooth of the upper or lower jaw that is phylogenetically number 1" [UBERON:cjm] +synonym: "first molar tooth" EXACT [] +synonym: "m1" RELATED ABBREVIATION [] +synonym: "molar 1" EXACT [] +synonym: "molar 1 tooth" EXACT [] +xref: FMA:321614 +xref: http://www.snomedbrowser.com/Codes/Details/422372003 +is_a: UBERON:0003655 ! molar tooth + +[Term] +id: UBERON:0018377 +name: molar tooth 3 +def: "The molar tooth of the upper or lower jaw that is phylogenetically number 3" [UBERON:cjm] +synonym: "m3" RELATED ABBREVIATION [] +synonym: "molar 3" EXACT [] +synonym: "molar 3 tooth" EXACT [] +synonym: "third molar tooth" EXACT [] +synonym: "wisdom tooth" RELATED HUMAN_PREFERRED [NCBITaxon:9606] +xref: FMA:321612 +xref: http://www.snomedbrowser.com/Codes/Details/181222005 +xref: MESH:A14.254.860.525.500 +xref: NCIT:C60732 +xref: Wisdom:tooth +is_a: UBERON:0003655 ! molar tooth + +[Term] +id: UBERON:0018378 +name: crustacean larval stage +def: "The larval stage of a crustacean, the stages of which are separated my moults. Typically this goes through a nauplius - zoea - post-larval cycle." [http://en.wikipedia.org/wiki/Crustacean_larvae] +is_a: UBERON:0000069 ! larval stage + +[Term] +id: UBERON:0018379 +name: metacestode +def: "The larval (metacestode) stage of the tapeworm Echinococcus multilocularis." [BTO:0000859] +xref: BTO:0000859 +is_a: UBERON:0002548 {source="BTO"} ! larva + +[Term] +id: UBERON:0018382 +name: second instar larva +def: "Instar: a stage in the life of an arthropod (as an insect) between two successive molts." [BTO:0001224] +xref: BTO:0001224 +xref: FBbt:00005338 +is_a: UBERON:0002548 {source="BTO"} ! larva + +[Term] +id: UBERON:0018385 +name: metacercaria +def: "A tailless encysted late larva of a trematode parasite that is usually the form which is infective for the definitive host." [BTO:0003927] +xref: BTO:0003927 +is_a: UBERON:0002548 {source="BTO"} ! larva + +[Term] +id: UBERON:0018387 +name: cestode +def: "Any of a class (Cestoda) of bilaterally symmetrical flatworms parasitic especially in the intestines of vertebrates." [BTO:0005278] +synonym: "tapeworm" RELATED [BTO:0005278] +xref: BTO:0005278 +is_a: UBERON:0002548 {source="BTO"} ! larva + +[Term] +id: UBERON:0018388 +name: cercaria +def: "A usually tadpole-shaped larval trematode worm that develops in a molluscan host from a redia." [BTO:0005513] +xref: BTO:0005513 +is_a: UBERON:0002548 {source="BTO"} ! larva + +[Term] +id: UBERON:0018389 +name: interoceptor +def: "A sensory receptor that detects stimulus within the body. Examples of stimuli that would be detected by interoceptors include blood pressure and blood oxygen level." [http://en.wikipedia.org/wiki/Interoceptor] +synonym: "enteroceptor" EXACT [FMA:84656] +synonym: "visceroceptor" EXACT [FMA:84656] +xref: FMA:84656 +xref: http://en.wikipedia.org/wiki/Interoceptor +is_a: UBERON:0012451 {source="FMA"} ! sensory receptor +relationship: part_of UBERON:0036255 ! interoceptive system + +[Term] +id: UBERON:0018391 +name: chemoreceptor +def: "A sensory receptor that detects chemical stimulus within the body." [http://orcid.org/0000-0002-6601-2165] +xref: FMA:85604 +xref: MESH:A08.800.550.700.120 +is_a: UBERON:0018389 {source="FMA"} ! interoceptor + +[Term] +id: UBERON:0018392 +name: arterial baroreceptor +def: "Arterial baroreceptors are stretch receptors that are stimulated by distortion of the arterial wall when pressure changes." [http://en.wikipedia.org/wiki/Baroreceptor#Arterial_baroreceptors] +synonym: "arterial stretch receptor" RELATED [MESH:A08.800.050.800.900.700] +is_a: UBERON:0004019 ! baroreceptor +intersection_of: UBERON:0004019 ! baroreceptor +intersection_of: located_in UBERON:0001637 ! artery +relationship: located_in UBERON:0001637 ! artery + +[Term] +id: UBERON:0018393 +name: low-pressure baroreceptor +def: "found in large systemic veins, in pulmonary vessels, and in the walls of the right atrium and ventricles of the heart (the atrial volume receptors)." [http://en.wikipedia.org/wiki/Baroreceptor#Low-pressure_baroreceptors] +is_a: UBERON:0004019 ! baroreceptor + +[Term] +id: UBERON:0018394 +name: vein baroreceptor +def: "A baroreceptor that located_in a vein." [OBOL:automatic] +is_a: UBERON:0018393 ! low-pressure baroreceptor +intersection_of: UBERON:0004019 ! baroreceptor +intersection_of: located_in UBERON:0001638 ! vein +relationship: located_in UBERON:0001638 ! vein + +[Term] +id: UBERON:0018395 +name: cardiac baroreceptor +def: "A baroreceptor that located_in a heart." [OBOL:automatic] +is_a: UBERON:0018393 ! low-pressure baroreceptor +intersection_of: UBERON:0004019 ! baroreceptor +intersection_of: located_in UBERON:0000948 ! heart +relationship: located_in UBERON:0000948 ! heart + +[Term] +id: UBERON:0018396 +name: pulmonary baroreceptor +def: "A baroreceptor that located_in a pulmonary vascular system." [OBOL:automatic] +is_a: UBERON:0018393 ! low-pressure baroreceptor +intersection_of: UBERON:0004019 ! baroreceptor +intersection_of: located_in UBERON:0008886 ! pulmonary vascular system +relationship: located_in UBERON:0008886 ! pulmonary vascular system + +[Term] +id: UBERON:0018397 +name: posterior superior alveolar artery +def: "The posterior superior alveolar artery (posterior dental artery) is given off from the maxillary, frequently in conjunction with the infraorbital just as the trunk of the vessel is passing into the pterygopalatine fossa." [http://en.wikipedia.org/wiki/Posterior_superior_alveolar_artery] +synonym: "superior posterior alveolar artery" EXACT [FMA:49757] +xref: FMA:49757 +xref: http://en.wikipedia.org/wiki/Posterior_superior_alveolar_artery +is_a: UBERON:0001637 ! artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: branching_part_of UBERON:0001616 {source="FMA"} ! maxillary artery +relationship: part_of UBERON:0001616 ! maxillary artery + +[Term] +id: UBERON:0018398 +name: superior alveolar nerve +synonym: "superior dental nerve" EXACT [FMA:52930] +xref: FMA:52930 +xref: http://www.snomedbrowser.com/Codes/Details/280235006 +xref: http://www.snomedbrowser.com/Codes/Details/280239000 +is_a: UBERON:0011779 ! nerve of head region +intersection_of: UBERON:0001021 ! nerve +intersection_of: innervates UBERON:0003686 ! tooth socket +relationship: branching_part_of UBERON:0000377 {source="FMA"} ! maxillary nerve +relationship: innervates UBERON:0003686 ! tooth socket +relationship: part_of UBERON:0000377 ! maxillary nerve + +[Term] +id: UBERON:0018401 +name: posterior superior alveolar nerve +def: "The posterior superior alveolar branches (posterior superior dental branches) arise from the trunk of the maxillary nerve just before it enters the infraorbital groove; they are generally two in number, but sometimes arise by a single trunk. They descend on the tuberosity of the maxilla and give off several twigs to the gums and neighboring parts of the mucous membrane of the cheek. They then enter the posterior alveolar canals on the infratemporal surface of the maxilla, and, passing from behind forward in the substance of the bone, communicate with the middle superior alveolar nerve, and give off branches to the lining membrane of the maxillary sinus and gingival and dental branches to each molar tooth from a superior dental plexus; these branches enter the apical foramina at the roots of the teeth. The posterior superior alveolar nerve innervates the second and third maxillary molars, and two of the three roots of the maxillary first molar (all but the mesiobuccal root). When giving a Posterior Superior Alveolar nerve block, it will anesthetize the mesialbuccal root of the maxillary first molar approximately 72% of the time." [http://en.wikipedia.org/wiki/Posterior_superior_alveolar_nerve] +synonym: "posterior superior alveolar branches" RELATED [http://en.wikipedia.org/wiki/Posterior_superior_alveolar_nerve] +synonym: "posterior superior dental nerve" EXACT [FMA:52931] +xref: FMA:52931 +xref: http://en.wikipedia.org/wiki/Posterior_superior_alveolar_nerve +is_a: UBERON:0018398 {source="FMA"} ! superior alveolar nerve +disjoint_from: UBERON:0035646 {source="lexical"} ! anterior superior alveolar nerve + +[Term] +id: UBERON:0018405 +name: inferior alveolar nerve +synonym: "inferior dental nerve" EXACT [FMA:53243] +xref: FMA:53243 +xref: http://www.snomedbrowser.com/Codes/Details/280261005 +is_a: UBERON:0011779 ! nerve of head region +relationship: branching_part_of UBERON:0003721 {source="FMA"} ! lingual nerve +relationship: part_of UBERON:0003721 ! lingual nerve + +[Term] +id: UBERON:0018406 +name: mental nerve +def: "Mental nerve is a general somatic afferent (sensory) nerve which provides sensation to the anterior aspects of the chin and lower lip as well as the buccal gingivae of the mandibular anterior teeth and the premolars. It is a branch of the posterior trunk of the inferior alveolar nerve, which is itself a branch of the mandibular division of the trigeminal nerve (CN V). The nerve emerges at the mental foramen in the mandibula, and divides beneath the Depressor anguli oris muscle into three branches: one descends to the skin of the chin. two ascend to the skin and mucous membrane of the lower lip. These branches communicate freely with the facial nerve." [http://en.wikipedia.org/wiki/Mental_nerve] +xref: FMA:53250 +xref: http://www.snomedbrowser.com/Codes/Details/280138001 +xref: Mental:nerve +is_a: UBERON:0001027 ! sensory nerve +is_a: UBERON:0011779 ! nerve of head region +intersection_of: UBERON:0001021 ! nerve +intersection_of: innervates UBERON:0008199 ! chin +relationship: branching_part_of UBERON:0018405 {source="FMA"} ! inferior alveolar nerve +relationship: innervates UBERON:0008199 ! chin +relationship: part_of UBERON:0018405 ! inferior alveolar nerve + +[Term] +id: UBERON:0018407 +name: infra-orbital foramen of maxilla +def: "A foramen on the exterior of the maxilla that is continuous with the infra-orbital canal and is the conduit for the passage of the infraorbital nerve and artery." [UBERON:cjm] +synonym: "foramen infraorbitale" EXACT LATIN [http://en.wikipedia.org/wiki/Infraorbital_foramen] +synonym: "infra-orbital foramen" EXACT [FMA:57718] +synonym: "infraorbital foramen" EXACT [MFMO:0000054] +xref: FMA:57718 +xref: Infraorbital:foramen +xref: MFMO:0000054 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0013685 ! foramen of skull +intersection_of: UBERON:0013685 ! foramen of skull +intersection_of: conduit_for UBERON:0004646 ! infraorbital artery +intersection_of: conduit_for UBERON:0018408 ! infra-orbital nerve +intersection_of: continuous_with UBERON:0011245 ! infra-orbital canal of maxilla +intersection_of: part_of UBERON:0002397 ! maxilla +relationship: conduit_for UBERON:0004646 ! infraorbital artery +relationship: conduit_for UBERON:0018408 ! infra-orbital nerve +relationship: continuous_with UBERON:0011245 ! infra-orbital canal of maxilla +relationship: part_of UBERON:0002397 ! maxilla + +[Term] +id: UBERON:0018408 +name: infra-orbital nerve +def: "A branch of the maxillary nerve that enters the infraorbital canal and innervates the lower eyelid, upper lip, the nasal vestibule, the upper incisors, canines, premolars, upper gums, lower eyelid and conjunctiva, and part of the nose." [http://en.wikipedia.org/wiki/Infraorbital_nerve, http://medical-dictionary.thefreedictionary.com/infra-orbital+nerve] +synonym: "infra-orbital nerve" RELATED [http://en.wikipedia.org/wiki/Infraorbital_nerve] +synonym: "infraorbital nerve" EXACT [FMA:52978] +synonym: "infraorbital portion" RELATED [http://en.wikipedia.org/wiki/Infraorbital_nerve] +xref: FMA:52978 +xref: http://www.snomedbrowser.com/Codes/Details/280360008 +xref: Infraorbital:nerve +is_a: UBERON:0011779 ! nerve of head region +is_a: UBERON:0022298 ! lower eyelid nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: branching_part_of UBERON:0000377 ! maxillary nerve +intersection_of: innervates UBERON:0000402 ! nasal vestibule +intersection_of: innervates UBERON:0001713 ! lower eyelid +intersection_of: innervates UBERON:0001834 ! upper lip +intersection_of: innervates UBERON:0011601 ! gingiva of upper jaw +relationship: branching_part_of UBERON:0000377 ! maxillary nerve +relationship: innervates UBERON:0000402 ! nasal vestibule +relationship: innervates UBERON:0001834 ! upper lip +relationship: innervates UBERON:0011601 ! gingiva of upper jaw +relationship: part_of UBERON:0000377 ! maxillary nerve + +[Term] +id: UBERON:0018409 +name: infra-orbital groove of maxilla +def: "A groove on the interior of the maxilla that is continuous with the infra-orbital canal and is the conduit for the passage of the infraorbital nerve and artery." [UBERON:cjm] +synonym: "infra-orbital groove" EXACT [http://en.wikipedia.org/wiki/Infraorbital_groove] +synonym: "infraorbital groove" EXACT [http://en.wikipedia.org/wiki/Infraorbital_groove] +synonym: "sulcus infraorbitalis" RELATED [http://en.wikipedia.org/wiki/Infraorbital_groove] +xref: FMA:57746 +xref: Infraorbital:groove +is_a: UBERON:0006846 ! surface groove +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0006846 ! surface groove +intersection_of: conduit_for UBERON:0004646 ! infraorbital artery +intersection_of: conduit_for UBERON:0018408 ! infra-orbital nerve +intersection_of: continuous_with UBERON:0011245 ! infra-orbital canal of maxilla +intersection_of: part_of UBERON:0002397 ! maxilla +relationship: conduit_for UBERON:0004646 ! infraorbital artery +relationship: conduit_for UBERON:0018408 ! infra-orbital nerve +relationship: continuous_with UBERON:0011245 ! infra-orbital canal of maxilla +relationship: part_of UBERON:0002397 ! maxilla + +[Term] +id: UBERON:0018410 +name: lacteal +def: "a lymphatic capillary that absorbs dietary fats in the villi of the small intestine." [http://en.wikipedia.org/wiki/Lacteals] +xref: FMA:68443 +xref: http://en.wikipedia.org/wiki/Lacteals +xref: http://www.snomedbrowser.com/Codes/Details/282414002 +is_a: UBERON:0006842 ! lymphatic capillary +intersection_of: UBERON:0006842 ! lymphatic capillary +intersection_of: channel_for UBERON:0000911 ! chyle +intersection_of: part_of UBERON:0001213 ! intestinal villus +relationship: channel_for UBERON:0000911 ! chyle +relationship: part_of UBERON:0001213 ! intestinal villus + +[Term] +id: UBERON:0018411 +name: ligament of hip joint +def: "A skeletal ligament that is part of a hip joint." [OBOL:automatic] +synonym: "hip joint ligament" EXACT [FMA:42868] +xref: FMA:42868 +xref: http://www.snomedbrowser.com/Codes/Details/182435001 +is_a: UBERON:0005179 ! pelvic region element +is_a: UBERON:0008846 ! skeletal ligament +intersection_of: UBERON:0008846 ! skeletal ligament +intersection_of: part_of UBERON:0001486 ! hip joint +relationship: part_of UBERON:0001486 ! hip joint + +[Term] +id: UBERON:0018412 +name: vidian nerve +def: "A nerve that is formed by the junction of the great petrosal nerve and the deep petrosal nerve and continues on to innervate the palate, nose and lacrimal gland." [http://en.wikipedia.org/wiki/Nerve_of_pterygoid_canal, http://medical-dictionary.thefreedictionary.com/vidian+nerve] +synonym: "nerve of pterygoid canal" EXACT [FMA:67584] +synonym: "nerve of the pterygoid canal" RELATED [http://en.wikipedia.org/wiki/Nerve_of_pterygoid_canal] +synonym: "pterygoid canal nerve" EXACT [FMA:67584] +synonym: "vidian nerve" EXACT [FMA:67584] +synonym: "vidian nerve" RELATED [http://en.wikipedia.org/wiki/Nerve_of_pterygoid_canal] +xref: FMA:67584 +xref: http://en.wikipedia.org/wiki/Nerve_of_pterygoid_canal +xref: http://www.snomedbrowser.com/Codes/Details/280273005 +is_a: UBERON:0011779 ! nerve of head region +relationship: branching_part_of UBERON:0001647 ! facial nerve +relationship: innervates UBERON:0007375 ! roof of mouth +relationship: part_of UBERON:0001647 ! facial nerve + +[Term] +id: UBERON:0018413 +name: facial nerve canal +def: "A Z-shaped canal running through the temporal bone from the internal acoustic meatus to the stylomastoid foramen. It is located within the middle ear region, according to its shape it is divided into three main segments: the labyrinthine, the tympanic, and the mastoidal segment ." [http://en.wikipedia.org/wiki/Facial_canal] +synonym: "canalis nervi facialis" EXACT LATIN [FMA:54952, FMA:TA] +synonym: "facial canal" EXACT [FMA:54952] +synonym: "fallopian canal" RELATED [FMA:54952] +xref: Facial:canal +xref: FMA:54952 +is_a: UBERON:0013685 ! foramen of skull +intersection_of: UBERON:0013685 ! foramen of skull +intersection_of: conduit_for UBERON:0001647 ! facial nerve +relationship: conduit_for UBERON:0001647 ! facial nerve +relationship: part_of UBERON:0001678 ! temporal bone + +[Term] +id: UBERON:0018415 +name: ethmoid foramen +def: "An bone foramen in the ethmoid bone." [http://orcid.org/0000-0002-6601-2165] +comment: Taxon nodes: In humans, refers to anterior or posterior ethmoid foramina +synonym: "ethmoid foramina" RELATED PLURAL [] +synonym: "ethmoidal foramen" EXACT [] +synonym: "ethmoidal foramina" RELATED PLURAL [] +synonym: "foramina ethmoidalia" EXACT LATIN [] +xref: Ethmoidal:foramina +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0013685 ! foramen of skull +intersection_of: UBERON:0004111 ! anatomical conduit +intersection_of: part_of UBERON:0001679 ! ethmoid bone +relationship: part_of UBERON:0001679 ! ethmoid bone + +[Term] +id: UBERON:0018424 +name: petrosal foramen +def: "A foramen of skull that is part of a petrosal bone." [OBOL:automatic] +synonym: "Foramen petrosum" EXACT [FMA:53158] +xref: FMA:53158 +is_a: UBERON:0013685 ! foramen of skull +intersection_of: UBERON:0013685 ! foramen of skull +intersection_of: part_of UBERON:0018348 ! petrosal bone +relationship: part_of UBERON:0018348 ! petrosal bone + +[Term] +id: UBERON:0018508 +name: foramen of nasal bone +def: "A vascular foramen opening on the outer surface of a nasal bone." [http://medical-dictionary.thefreedictionary.com/nasal+foramina] +synonym: "foramen of nasal bone" RELATED [] +synonym: "foramina nasalia" EXACT LATIN [http://en.wikipedia.org/wiki/Nasal_foramina] +synonym: "nasal foramen" EXACT [] +synonym: "nasal foramina" RELATED PLURAL [FMA:57653] +xref: FMA:57653 +xref: Nasal:foramina +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0013685 ! foramen of skull +intersection_of: UBERON:0013685 ! foramen of skull +intersection_of: part_of UBERON:0001681 ! nasal bone +relationship: conduit_for UBERON:0001981 ! blood vessel +relationship: part_of UBERON:0001681 ! nasal bone + +[Term] +id: UBERON:0018529 +name: female inguinal ring +def: "A inguinal ring that is part of a female reproductive system." [OBOL:automatic] +xref: EMAPA:19172 +xref: MA:0003250 +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0006674 ! inguinal ring +intersection_of: UBERON:0006674 ! inguinal ring +intersection_of: part_of UBERON:0000474 ! female reproductive system +relationship: part_of UBERON:0004353 ! female inguinal canal + +[Term] +id: UBERON:0018530 +name: male inguinal ring +def: "A inguinal ring that is part of a male reproductive system." [OBOL:automatic] +xref: EMAPA:29307 +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0006674 ! inguinal ring +intersection_of: UBERON:0006674 ! inguinal ring +intersection_of: part_of UBERON:0000079 ! male reproductive system +relationship: part_of UBERON:0004354 ! male inguinal canal + +[Term] +id: UBERON:0018531 +name: female superficial inguinal ring +def: "A deep inguinal ring that is part of a female reproductive system." [OBOL:automatic] +synonym: "female external inguinal ring" EXACT [MA:0003252] +xref: EMAPA:19174 +xref: MA:0003252 +is_a: UBERON:0013721 ! deep inguinal ring +is_a: UBERON:0018529 ! female inguinal ring +intersection_of: UBERON:0013721 ! deep inguinal ring +intersection_of: part_of UBERON:0000474 ! female reproductive system + +[Term] +id: UBERON:0018532 +name: female deep inguinal ring +def: "A deep inguinal ring that is part of a male reproductive system." [OBOL:automatic] +synonym: "female internal inguinal ring" EXACT [MA:0003251] +xref: EMAPA:19173 +xref: MA:0003251 +is_a: UBERON:0013721 ! deep inguinal ring +is_a: UBERON:0018530 ! male inguinal ring +intersection_of: UBERON:0013721 ! deep inguinal ring +intersection_of: part_of UBERON:0000079 ! male reproductive system + +[Term] +id: UBERON:0018533 +name: crus of penis or clitoris +def: "the continuation of each corpus cavernosum of the penis or clitoris, diverging posteriorly to be attached to the pubic arch." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0006609 ! corpus cavernosum + +[Term] +id: UBERON:0018534 +name: obsolete spinal cord reticular formation +comment: Obsoleted as NN retricts this to brainstem structures +synonym: "formatio reticularis spinalis" EXACT [FMA:TA] +synonym: "reticular formation of spinal cord" EXACT [FMA:77455] +synonym: "spinal reticular formation" EXACT [FMA:77455] +is_obsolete: true +consider: FMA:77455 +consider: SCTID:369268003 + +[Term] +id: UBERON:0018535 +name: forelimb feather +def: "A feather that is part of a forelimb." [http://orcid.org/0000-0002-6601-2165] +synonym: "feather of forelimb" EXACT [] +is_a: UBERON:0000022 ! feather +intersection_of: UBERON:0000022 ! feather +intersection_of: part_of UBERON:0002102 ! forelimb +relationship: part_of UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0018536 +name: wing feather +def: "A feather that is part of a forelimb wing." [http://orcid.org/0000-0002-6601-2165] +synonym: "feather of forelimb wing" EXACT [] +is_a: UBERON:0018535 ! forelimb feather +intersection_of: UBERON:0000022 ! feather +intersection_of: part_of UBERON:0000024 ! forelimb wing +relationship: part_of UBERON:0000024 ! forelimb wing + +[Term] +id: UBERON:0018537 +name: tail feather +def: "A feather that is part of a tail." [http://orcid.org/0000-0002-6601-2165] +synonym: "feather of tail" EXACT [] +is_a: UBERON:0000022 ! feather +intersection_of: UBERON:0000022 ! feather +intersection_of: part_of UBERON:0002415 ! tail +relationship: part_of UBERON:0002415 ! tail + +[Term] +id: UBERON:0018538 +name: breast feather +def: "A feather that is part of a the upper ventral region of an animal's torso." [http://orcid.org/0000-0002-6601-2165] +synonym: "feather of breast" EXACT [] +synonym: "feather of mammary region" EXACT [] +synonym: "feather of upper chest" EXACT [] +synonym: "feather of upper ventral region" EXACT [] +is_a: UBERON:0000022 ! feather +intersection_of: UBERON:0000022 ! feather +intersection_of: part_of UBERON:0000310 ! breast +relationship: part_of UBERON:0000310 ! breast + +[Term] +id: UBERON:0018539 +name: dorsal feather +def: "A feather that is part of a the dorsal region of an animal's torso." [http://orcid.org/0000-0002-6601-2165] +synonym: "feather of back" EXACT [] +synonym: "feather of dorsum" EXACT [] +is_a: UBERON:0000022 ! feather +intersection_of: UBERON:0000022 ! feather +intersection_of: part_of UBERON:0001137 ! dorsum +relationship: part_of UBERON:0001137 ! dorsum + +[Term] +id: UBERON:0018540 +name: breast feather tract +def: "A feather tract that is part of a the upper ventral region of an animal's torso." [http://orcid.org/0000-0002-6601-2165] +synonym: "feather tract of breast" EXACT [] +synonym: "feather tract of mammary region" EXACT [] +synonym: "feather tract of upper chest" EXACT [] +synonym: "feather tract of upper ventral region" EXACT [] +synonym: "row of feathers on breast" EXACT [] +synonym: "row of feathers on mammary region" EXACT [] +synonym: "row of feathers on upper chest" EXACT [] +synonym: "row of feathers on upper ventral region" EXACT [] +is_a: UBERON:0013512 ! row of feathers +intersection_of: UBERON:0013512 ! row of feathers +intersection_of: part_of UBERON:0000310 ! breast +relationship: part_of UBERON:0000310 ! breast + +[Term] +id: UBERON:0018542 +name: mandibular symphyseal region +def: "The region of the mandible on or near the midline (near the mandiblular symphysis)" [MFMO:0000147] +synonym: "symphyseal region" BROAD [MFMO:0000147] +xref: MFMO:0000147 +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0004742 ! dentary + +[Term] +id: UBERON:0018543 +name: lumen of intestine +def: "The anatomical space within the intestine." [http://orcid.org/0000-0002-6601-2165] +synonym: "gut lumen" RELATED [ZFA:0005807] +synonym: "intestinal lumen" EXACT [FMA:14586] +synonym: "intestine lumen" EXACT [ZFA:0005807] +xref: FMA:14586 +xref: TADS:0000495 +xref: WBbt:0005791 +xref: ZFA:0005807 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0000160 ! intestine +relationship: luminal_space_of UBERON:0000160 ! intestine +relationship: part_of UBERON:0000160 ! intestine + +[Term] +id: UBERON:0018544 +name: trigeminal nerve muscle +def: "Muscle innervated by the trigeminal nerve (Cranial Nerve V)." [MFMO:0000072] +synonym: "muscle innervated by the trigeminal nerve" EXACT [] +synonym: "muscles innervated by the trigeminal nerve" EXACT PLURAL [MFMO:0000072] +xref: MFMO:0000072 +is_a: UBERON:0001630 ! muscle organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001630 ! muscle organ +intersection_of: innervated_by UBERON:0001645 ! trigeminal nerve +relationship: develops_from UBERON:0004362 ! pharyngeal arch 1 +relationship: innervated_by UBERON:0001645 ! trigeminal nerve + +[Term] +id: UBERON:0018545 +name: nucleus of the bulbocavernosus +def: "A cluster of motoneurons located in the anterior gray column of lumbar segments 5 and 6 of the spinal cord in the rat. Functionally it belongs to the somatic motoneuron pools of the subcortical motor system ( Swanson-2004 )" [NeuroNames:2700] +synonym: "nucleus of the bulbocavernosus" RELATED [NeuroNames:2700] +synonym: "nucleus of the bulbospongiosus" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "spinal nucleus of the bulbocavernosus" RELATED [https://www.msu.edu/~bjlab/snb.html] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2700 +is_a: UBERON:0011777 ! nucleus of spinal cord +relationship: part_of UBERON:0002257 ! ventral horn of spinal cord +relationship: present_in_taxon NCBITaxon:10114 + +[Term] +id: UBERON:0018549 +name: ventral wall of dorsal aorta +def: "Region where blood progenitor markers are expressed. Probable site of definitive hematopoiesis between 36hpf and 4dpf." [ZFA:0005028, ZFA:curator] +synonym: "AGM" RELATED [ZFA:0005028] +synonym: "aorta gonad mesonephros region" RELATED [ZFA:0005028] +synonym: "DA roof" RELATED [ZFA:0005028] +synonym: "DA-PCV joint" EXACT [ZFA:0005028] +synonym: "DA-PCV joint" NARROW [ZFA:0005028] +synonym: "dorsal aorta - posterior cardinal vein joint" EXACT [ZFIN:ZDB-PUB-061227-29] +synonym: "DP joint" RELATED [ZFA:0005028] +xref: EFO:0003699 +xref: TAO:0005028 +xref: ZFA:0005028 +is_a: UBERON:0000479 {source="ZFA"} ! tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0002390 {source="ZFA"} ! hematopoietic system +relationship: part_of UBERON:0005805 {source="ZFA"} ! dorsal aorta + +[Term] +id: UBERON:0018550 +name: secondary incisor tooth +synonym: "permanent incisor" EXACT [] +synonym: "permanent incisor tooth" EXACT [FMA:84201] +xref: FMA:84201 +xref: http://www.snomedbrowser.com/Codes/Details/304571003 +is_a: UBERON:0001098 ! incisor tooth +is_a: UBERON:0007775 ! secondary tooth +intersection_of: UBERON:0001098 ! incisor tooth +intersection_of: part_of UBERON:0007774 ! secondary dentition + +[Term] +id: UBERON:0018551 +name: central incisor tooth +subset: pheno_slim +synonym: "central incisor" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/422364000 +is_a: UBERON:0001098 ! incisor tooth +intersection_of: UBERON:0001098 ! incisor tooth +intersection_of: in_central_side_of UBERON:0018645 ! incisor region of dentition +relationship: in_central_side_of UBERON:0018645 ! incisor region of dentition +relationship: part_of UBERON:0018645 ! incisor region of dentition + +[Term] +id: UBERON:0018552 +name: lateral incisor tooth +subset: pheno_slim +synonym: "lateral incisor" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/422366003 +is_a: UBERON:0001098 ! incisor tooth +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0001098 ! incisor tooth +intersection_of: in_lateral_side_of UBERON:0018645 ! incisor region of dentition +relationship: in_lateral_side_of UBERON:0018645 ! incisor region of dentition +relationship: part_of UBERON:0018645 ! incisor region of dentition + +[Term] +id: UBERON:0018553 +name: primary central incisor tooth +synonym: "primary central incisor" EXACT [] +is_a: UBERON:0016476 ! primary incisor tooth +is_a: UBERON:0018551 ! central incisor tooth +intersection_of: UBERON:0016476 ! primary incisor tooth +intersection_of: in_central_side_of UBERON:0018645 ! incisor region of dentition + +[Term] +id: UBERON:0018554 +name: primary lateral incisor tooth +synonym: "primary lateral incisor" EXACT [] +is_a: UBERON:0016476 ! primary incisor tooth +is_a: UBERON:0018552 ! lateral incisor tooth +intersection_of: UBERON:0016476 ! primary incisor tooth +intersection_of: in_lateral_side_of UBERON:0018645 ! incisor region of dentition + +[Term] +id: UBERON:0018561 +name: upper secondary canine tooth +def: "A secondary canine tooth that is part of a upper jaw region." [OBOL:automatic] +synonym: "maxillary secondary canine tooth" EXACT [FMA:55714] +synonym: "permanent upper canine tooth" RELATED [FMA:55714] +synonym: "upper permanent canine tooth" EXACT [FMA:55714] +xref: FMA:55714 +is_a: UBERON:0018584 ! secondary canine tooth +is_a: UBERON:0018613 ! secondary upper tooth +is_a: UBERON:0018621 ! upper canine tooth +intersection_of: UBERON:0018584 ! secondary canine tooth +intersection_of: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0018562 +name: lower secondary canine tooth +def: "A secondary canine tooth that is part of a lower jaw region." [OBOL:automatic] +synonym: "lower permanent canine tooth" EXACT [FMA:55715] +synonym: "mandibular secondary canine tooth" EXACT [FMA:55715] +synonym: "permanent lower canine tooth" RELATED [FMA:55715] +xref: FMA:55715 +is_a: UBERON:0018584 ! secondary canine tooth +is_a: UBERON:0018614 ! permanent lower tooth +is_a: UBERON:0018622 ! lower canine tooth +intersection_of: UBERON:0018584 ! secondary canine tooth +intersection_of: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0018568 +name: lower central secondary incisor tooth +def: "A lower jaw incisor that is in_the_central_side_of a dentition." [OBOL:automatic] +subset: pheno_slim +synonym: "lower central permanent incisor tooth" EXACT [FMA:55723] +synonym: "mandibular central permanent incisor" EXACT [] +synonym: "mandibular central secondary incisor tooth" EXACT [FMA:55723] +xref: FMA:55723 +is_a: UBERON:0018601 ! lower central incisor tooth +is_a: UBERON:0018623 ! lower secondary incisor tooth +intersection_of: UBERON:0003451 ! lower jaw incisor +intersection_of: in_central_side_of UBERON:0018645 ! incisor region of dentition +intersection_of: part_of UBERON:0007774 ! secondary dentition + +[Term] +id: UBERON:0018570 +name: lower lateral secondary incisor tooth +def: "A lower jaw incisor that is in_the_lateral_side_of a dentition." [OBOL:automatic] +subset: pheno_slim +synonym: "lower lateral permanent incisor tooth" EXACT [FMA:55725] +synonym: "mandibular lateral permanent incisor" EXACT [] +synonym: "mandibular lateral secondary incisor tooth" EXACT [FMA:55725] +xref: FMA:55725 +is_a: UBERON:0018602 ! lower lateral incisor tooth +is_a: UBERON:0018623 ! lower secondary incisor tooth +intersection_of: UBERON:0003451 ! lower jaw incisor +intersection_of: in_lateral_side_of UBERON:0018645 ! incisor region of dentition +intersection_of: part_of UBERON:0007774 ! secondary dentition + +[Term] +id: UBERON:0018571 +name: upper first secondary premolar tooth +synonym: "maxillary first secondary premolar tooth" EXACT [FMA:55801] +synonym: "permanent first upper premolar tooth" RELATED [FMA:55801] +synonym: "secondary first upper premolar tooth" RELATED [FMA:55801] +synonym: "upper first permanent premolar tooth" EXACT [FMA:55801] +xref: FMA:55801 +is_a: UBERON:0016452 ! upper secondary premolar tooth +is_a: UBERON:0018294 ! premolar 1 +intersection_of: UBERON:0018294 ! premolar 1 +intersection_of: part_of UBERON:0001709 ! upper jaw region +intersection_of: part_of UBERON:0007774 ! secondary dentition + +[Term] +id: UBERON:0018572 +name: upper second secondary premolar tooth +synonym: "maxillary second secondary premolar tooth" EXACT [FMA:55802] +synonym: "permanent second upper premolar tooth" RELATED [FMA:55802] +synonym: "secondary second upper premolar tooth" RELATED [FMA:55802] +synonym: "upper second permanent premolar tooth" EXACT [FMA:55802] +xref: FMA:55802 +is_a: UBERON:0016452 ! upper secondary premolar tooth +is_a: UBERON:0018640 ! premolar 2 +intersection_of: UBERON:0018640 ! premolar 2 +intersection_of: part_of UBERON:0001709 ! upper jaw region +intersection_of: part_of UBERON:0007774 ! secondary dentition + +[Term] +id: UBERON:0018573 +name: lower first secondary premolar tooth +synonym: "lower first permanent premolar tooth" EXACT [FMA:55803] +synonym: "mandibular first secondary premolar tooth" EXACT [FMA:55803] +synonym: "permanent first lower premolar tooth" RELATED [FMA:55803] +synonym: "secondary first lower premolar tooth" RELATED [FMA:55803] +xref: FMA:55803 +is_a: UBERON:0016453 ! lower secondary premolar tooth +is_a: UBERON:0018284 ! lower premolar 1 +intersection_of: UBERON:0018294 ! premolar 1 +intersection_of: part_of UBERON:0001710 ! lower jaw region +intersection_of: part_of UBERON:0007774 ! secondary dentition + +[Term] +id: UBERON:0018574 +name: lower second secondary premolar tooth +synonym: "lower second permanent premolar tooth" EXACT [FMA:55804] +synonym: "mandibular second secondary premolar tooth" EXACT [FMA:55804] +synonym: "permanent second lower premolar tooth" RELATED [FMA:55804] +synonym: "secondary second lower premolar tooth" RELATED [FMA:55804] +xref: FMA:55804 +is_a: UBERON:0016453 ! lower secondary premolar tooth +is_a: UBERON:0018285 ! lower premolar 2 +intersection_of: UBERON:0018640 ! premolar 2 +intersection_of: part_of UBERON:0001710 ! lower jaw region +intersection_of: part_of UBERON:0007774 ! secondary dentition + +[Term] +id: UBERON:0018575 +name: upper first secondary molar tooth +synonym: "maxillary first secondary molar tooth" EXACT [FMA:55811] +synonym: "upper first permanent molar tooth" EXACT [FMA:55811] +xref: FMA:55811 +is_a: UBERON:0013619 ! upper secondary molar tooth +is_a: UBERON:0018302 ! upper molar 1 +is_a: UBERON:0018608 ! permanent molar tooth 1 +intersection_of: UBERON:0018376 ! molar tooth 1 +intersection_of: part_of UBERON:0001709 ! upper jaw region +intersection_of: part_of UBERON:0007774 ! secondary dentition + +[Term] +id: UBERON:0018576 +name: upper second secondary molar tooth +synonym: "maxillary second secondary molar tooth" EXACT [FMA:55812] +synonym: "upper second permanent tooth" EXACT [FMA:55812] +xref: FMA:55812 +is_a: UBERON:0013619 ! upper secondary molar tooth +is_a: UBERON:0018607 ! permanent molar tooth 2 +intersection_of: UBERON:0018606 ! molar tooth 2 +intersection_of: part_of UBERON:0001709 ! upper jaw region +intersection_of: part_of UBERON:0007774 ! secondary dentition + +[Term] +id: UBERON:0018577 +name: upper third secondary molar tooth +synonym: "dens serotinus (upper)" EXACT LATIN [FMA:55813, FMA:TA] +synonym: "maxillary third secondary molar tooth" EXACT [FMA:55813] +synonym: "permanent third upper molar tooth" RELATED [FMA:55813] +synonym: "secondary third upper molar tooth" RELATED [FMA:55813] +synonym: "upper third permanent molar tooth" EXACT [FMA:55813] +synonym: "upper wisdom tooth" EXACT [FMA:55813] +xref: FMA:55813 +is_a: UBERON:0013619 ! upper secondary molar tooth +is_a: UBERON:0018377 ! molar tooth 3 +intersection_of: UBERON:0018377 ! molar tooth 3 +intersection_of: part_of UBERON:0001709 ! upper jaw region +intersection_of: part_of UBERON:0007774 ! secondary dentition + +[Term] +id: UBERON:0018578 +name: lower first secondary molar tooth +synonym: "lower first permanent molar tooth" EXACT [FMA:55814] +synonym: "mandibular first secondary molar tooth" EXACT [FMA:55814] +xref: FMA:55814 +is_a: UBERON:0013621 ! lower secondary molar tooth +is_a: UBERON:0018608 ! permanent molar tooth 1 +intersection_of: UBERON:0018376 ! molar tooth 1 +intersection_of: part_of UBERON:0001710 ! lower jaw region +intersection_of: part_of UBERON:0007774 ! secondary dentition + +[Term] +id: UBERON:0018579 +name: lower second secondary molar tooth +synonym: "lower second permanent molar tooth" EXACT [FMA:55815] +synonym: "lower secondary molar 2" EXACT [] +synonym: "mandibular second secondary molar tooth" EXACT [FMA:55815] +xref: FMA:55815 +is_a: UBERON:0013621 ! lower secondary molar tooth +is_a: UBERON:0018607 ! permanent molar tooth 2 +intersection_of: UBERON:0018606 ! molar tooth 2 +intersection_of: part_of UBERON:0001710 ! lower jaw region +intersection_of: part_of UBERON:0007774 ! secondary dentition + +[Term] +id: UBERON:0018580 +name: lower third secondary molar tooth +synonym: "lower secondary molar 3" EXACT [] +synonym: "lower third permanent molar tooth" EXACT [FMA:55817] +synonym: "lower wisdom tooth" EXACT [FMA:55817] +synonym: "mandibular third secondary molar tooth" EXACT [FMA:55817] +synonym: "secondary third lower molar tooth" RELATED [FMA:55817] +xref: FMA:55817 +is_a: UBERON:0013621 ! lower secondary molar tooth +is_a: UBERON:0018282 ! lower molar 3 +intersection_of: UBERON:0018377 ! molar tooth 3 +intersection_of: part_of UBERON:0001710 ! lower jaw region +intersection_of: part_of UBERON:0007774 ! secondary dentition + +[Term] +id: UBERON:0018583 +name: primary canine tooth +synonym: "deciduous canine tooth" EXACT [FMA:84202] +synonym: "primary tooth C" EXACT [FMA:84202] +synonym: "temporary canine tooth" EXACT [FMA:84202] +xref: FMA:84202 +xref: http://www.snomedbrowser.com/Codes/Details/15819002 +is_a: UBERON:0003674 ! cuspid +is_a: UBERON:0007115 ! deciduous tooth +intersection_of: UBERON:0003674 ! cuspid +intersection_of: part_of UBERON:0007116 ! primary dentition + +[Term] +id: UBERON:0018584 +name: secondary canine tooth +synonym: "permanent canine tooth" EXACT [FMA:84203] +xref: FMA:84203 +xref: http://www.snomedbrowser.com/Codes/Details/134340007 +is_a: UBERON:0003674 ! cuspid +is_a: UBERON:0007775 ! secondary tooth +intersection_of: UBERON:0003674 ! cuspid +intersection_of: part_of UBERON:0007774 ! secondary dentition + +[Term] +id: UBERON:0018588 +name: upper first primary molar tooth +synonym: "upper first deciduous molar tooth" EXACT [FMA:84211] +synonym: "upper primary tooth D" EXACT [FMA:84211] +xref: FMA:84211 +is_a: UBERON:0013617 ! upper primary molar tooth +is_a: UBERON:0018302 ! upper molar 1 +is_a: UBERON:0018644 ! deciduous molar tooth 1 +intersection_of: UBERON:0018376 ! molar tooth 1 +intersection_of: part_of UBERON:0001709 ! upper jaw region +intersection_of: part_of UBERON:0007116 ! primary dentition + +[Term] +id: UBERON:0018589 +name: lower first primary molar tooth +synonym: "lower first deciduous molar tooth" EXACT [FMA:84212] +synonym: "lower primary molar 1" EXACT [] +synonym: "lower primary tooth D" EXACT [FMA:84212] +xref: FMA:84212 +is_a: UBERON:0013620 ! lower primary molar tooth +is_a: UBERON:0018644 ! deciduous molar tooth 1 +intersection_of: UBERON:0018376 ! molar tooth 1 +intersection_of: part_of UBERON:0001710 ! lower jaw region +intersection_of: part_of UBERON:0007116 ! primary dentition + +[Term] +id: UBERON:0018591 +name: upper primary incisor tooth +def: "A primary incisor tooth that is part of a upper jaw region." [OBOL:automatic] +synonym: "deciduous upper incisor tooth" RELATED [FMA:84214] +synonym: "upper deciduous incisor tooth" EXACT [FMA:84214] +xref: FMA:84214 +is_a: UBERON:0003450 ! upper jaw incisor +is_a: UBERON:0016476 ! primary incisor tooth +is_a: UBERON:0018616 ! primary upper tooth +intersection_of: UBERON:0016476 ! primary incisor tooth +intersection_of: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0018593 +name: upper central primary incisor tooth +def: "A upper primary canine tooth that is in_the_central_side_of a dentition." [OBOL:automatic] +subset: pheno_slim +synonym: "upper central deciduous incisor tooth" EXACT [FMA:84216] +synonym: "upper primary tooth A" EXACT [FMA:84216] +xref: FMA:84216 +is_a: UBERON:0018553 ! primary central incisor tooth +is_a: UBERON:0018591 ! upper primary incisor tooth +is_a: UBERON:0018603 ! upper central incisor tooth +intersection_of: UBERON:0018591 ! upper primary incisor tooth +intersection_of: in_central_side_of UBERON:0018645 ! incisor region of dentition + +[Term] +id: UBERON:0018594 +name: upper lateral primary incisor tooth +def: "A upper primary canine tooth that is in_the_lateral_side_of a dentition." [OBOL:automatic] +subset: pheno_slim +synonym: "upper lateral deciduous incisor tooth" EXACT [FMA:84217] +synonym: "upper primary tooth B" EXACT [FMA:84217] +xref: FMA:84217 +is_a: UBERON:0018554 ! primary lateral incisor tooth +is_a: UBERON:0018591 ! upper primary incisor tooth +is_a: UBERON:0018604 ! upper lateral incisor tooth +intersection_of: UBERON:0018591 ! upper primary incisor tooth +intersection_of: in_lateral_side_of UBERON:0018645 ! incisor region of dentition + +[Term] +id: UBERON:0018595 +name: lower central primary incisor tooth +def: "A lower primary incisor tooth that is in_the_central_side_of a dentition." [OBOL:automatic] +subset: pheno_slim +synonym: "deciduous lower central incisor tooth" RELATED [FMA:84218] +synonym: "lower central deciduous incisor tooth" EXACT [FMA:84218] +synonym: "lower primary tooth A" EXACT [FMA:84218] +xref: FMA:84218 +is_a: UBERON:0017748 ! lower primary incisor tooth +is_a: UBERON:0018553 ! primary central incisor tooth +is_a: UBERON:0018601 ! lower central incisor tooth +intersection_of: UBERON:0017748 ! lower primary incisor tooth +intersection_of: in_central_side_of UBERON:0018645 ! incisor region of dentition + +[Term] +id: UBERON:0018596 +name: lower lateral primary incisor tooth +def: "A lower primary incisor tooth that is in_the_lateral_side_of a dentition." [OBOL:automatic] +subset: pheno_slim +synonym: "deciduous lower lateral incisor tooth" RELATED [FMA:84219] +synonym: "lower lateral deciduous incisor tooth" EXACT [FMA:84219] +synonym: "lower primary tooth B" EXACT [FMA:84219] +synonym: "mandibular lateral primary incisor" EXACT [] +xref: FMA:84219 +is_a: UBERON:0017748 ! lower primary incisor tooth +is_a: UBERON:0018554 ! primary lateral incisor tooth +is_a: UBERON:0018602 ! lower lateral incisor tooth +intersection_of: UBERON:0017748 ! lower primary incisor tooth +intersection_of: in_lateral_side_of UBERON:0018645 ! incisor region of dentition + +[Term] +id: UBERON:0018597 +name: upper primary canine tooth +def: "A primary canine tooth that is part of a upper jaw region." [OBOL:automatic] +synonym: "deciduous upper canine tooth" RELATED [FMA:84228] +synonym: "upper deciduous canine tooth" EXACT [FMA:84228] +synonym: "upper primary tooth C" EXACT [FMA:84228] +xref: FMA:84228 +xref: http://www.snomedbrowser.com/Codes/Details/421810006 +is_a: UBERON:0018583 ! primary canine tooth +is_a: UBERON:0018616 ! primary upper tooth +is_a: UBERON:0018621 ! upper canine tooth +intersection_of: UBERON:0018583 ! primary canine tooth +intersection_of: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0018598 +name: lower primary canine tooth +def: "A primary canine tooth that is part of a lower jaw region." [OBOL:automatic] +synonym: "deciduous lower canine tooth" RELATED [FMA:84229] +synonym: "lower deciduous canine tooth" EXACT [FMA:84229] +synonym: "lower primary tooth C" EXACT [FMA:84229] +synonym: "primary lower canine tooth" EXACT [] +xref: FMA:84229 +xref: http://www.snomedbrowser.com/Codes/Details/420326009 +is_a: UBERON:0018583 ! primary canine tooth +is_a: UBERON:0018617 ! primary lower tooth +is_a: UBERON:0018622 ! lower canine tooth +intersection_of: UBERON:0018583 ! primary canine tooth +intersection_of: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0018599 +name: upper second primary molar tooth +synonym: "upper primary tooth E" EXACT [FMA:84236] +synonym: "upper second deciduous molar tooth" EXACT [FMA:84236] +xref: FMA:84236 +is_a: UBERON:0013617 ! upper primary molar tooth +is_a: UBERON:0018643 ! deciduous molar tooth 2 +intersection_of: UBERON:0018606 ! molar tooth 2 +intersection_of: part_of UBERON:0001709 ! upper jaw region +intersection_of: part_of UBERON:0007116 ! primary dentition + +[Term] +id: UBERON:0018600 +name: lower second primary molar tooth +synonym: "lower primary tooth E" EXACT [FMA:84237] +synonym: "lower second deciduous molar tooth" EXACT [FMA:84237] +xref: FMA:84237 +is_a: UBERON:0013620 ! lower primary molar tooth +is_a: UBERON:0018643 ! deciduous molar tooth 2 +intersection_of: UBERON:0018606 ! molar tooth 2 +intersection_of: part_of UBERON:0001710 ! lower jaw region +intersection_of: part_of UBERON:0007116 ! primary dentition + +[Term] +id: UBERON:0018601 +name: lower central incisor tooth +def: "A incisor tooth that is in_the_central_side_of a dentition and is part of a lower jaw region." [OBOL:automatic] +subset: pheno_slim +synonym: "lower central incisor" EXACT [] +synonym: "mandibular central incisor" EXACT [] +xref: FMA:290182 +is_a: UBERON:0003451 ! lower jaw incisor +is_a: UBERON:0018551 ! central incisor tooth +intersection_of: UBERON:0001098 ! incisor tooth +intersection_of: in_central_side_of UBERON:0018645 ! incisor region of dentition +intersection_of: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0018602 +name: lower lateral incisor tooth +def: "A incisor tooth that is in_the_lateral_side_of a dentition and is part of a lower jaw region." [OBOL:automatic] +subset: pheno_slim +synonym: "lower lateral incisor" EXACT [] +synonym: "mandibular lateral incisor" EXACT [] +xref: FMA:290197 +is_a: UBERON:0003451 ! lower jaw incisor +is_a: UBERON:0018552 ! lateral incisor tooth +intersection_of: UBERON:0001098 ! incisor tooth +intersection_of: in_lateral_side_of UBERON:0018645 ! incisor region of dentition +intersection_of: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0018603 +name: upper central incisor tooth +def: "A incisor tooth that is in_the_central_side_of a dentition and is part of a upper jaw region." [OBOL:automatic] +subset: pheno_slim +synonym: "maxillary central incisor" EXACT [] +synonym: "upper central incisor" EXACT [] +xref: FMA:290180 +is_a: UBERON:0003450 ! upper jaw incisor +is_a: UBERON:0018551 ! central incisor tooth +intersection_of: UBERON:0001098 ! incisor tooth +intersection_of: in_central_side_of UBERON:0018645 ! incisor region of dentition +intersection_of: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0018604 +name: upper lateral incisor tooth +def: "A incisor tooth that is in_the_lateral_side_of a dentition and is part of a upper jaw region." [OBOL:automatic] +subset: pheno_slim +synonym: "maxillary lateral incisor" EXACT [] +synonym: "upper lateral incisor" EXACT [] +xref: FMA:290194 +is_a: UBERON:0003450 ! upper jaw incisor +is_a: UBERON:0018552 ! lateral incisor tooth +intersection_of: UBERON:0001098 ! incisor tooth +intersection_of: in_lateral_side_of UBERON:0018645 ! incisor region of dentition +intersection_of: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0018606 +name: molar tooth 2 +def: "The molar tooth of the upper or lower jaw that is phylogenetically number 2" [UBERON:cjm] +synonym: "molar 2" EXACT [] +synonym: "molar 2 tooth" EXACT [] +synonym: "second molar tooth" EXACT [] +xref: FMA:321613 +xref: http://www.snomedbrowser.com/Codes/Details/422374002 +is_a: UBERON:0003655 ! molar tooth + +[Term] +id: UBERON:0018607 +name: permanent molar tooth 2 +subset: pheno_slim +synonym: "permanent second molar tooth" EXACT [] +synonym: "second permanent molar" EXACT [] +synonym: "second permanent molar tooth" EXACT [] +synonym: "secondary second molar tooth" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/420479003 +is_a: UBERON:0013618 ! secondary molar tooth +is_a: UBERON:0018606 ! molar tooth 2 +intersection_of: UBERON:0018606 ! molar tooth 2 +intersection_of: part_of UBERON:0007774 ! secondary dentition + +[Term] +id: UBERON:0018608 +name: permanent molar tooth 1 +subset: pheno_slim +synonym: "first permanent molar" EXACT [] +synonym: "first permanent molar tooth" EXACT [] +synonym: "permanent first molar tooth" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/304565009 +is_a: UBERON:0013618 ! secondary molar tooth +is_a: UBERON:0018376 ! molar tooth 1 +intersection_of: UBERON:0018376 ! molar tooth 1 +intersection_of: part_of UBERON:0007774 ! secondary dentition + +[Term] +id: UBERON:0018613 +name: secondary upper tooth +synonym: "permanent upper tooth" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/245564000 +is_a: UBERON:0003267 ! tooth of upper jaw +is_a: UBERON:0007775 ! secondary tooth +intersection_of: UBERON:0007775 ! secondary tooth +intersection_of: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0018614 +name: permanent lower tooth +synonym: "secondary lower tooth" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/245588003 +is_a: UBERON:0003268 ! tooth of lower jaw +is_a: UBERON:0007775 ! secondary tooth +intersection_of: UBERON:0007775 ! secondary tooth +intersection_of: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0018616 +name: primary upper tooth +synonym: "deciduous upper tooth" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/245613009 +is_a: UBERON:0003267 ! tooth of upper jaw +is_a: UBERON:0007115 ! deciduous tooth +intersection_of: UBERON:0007115 ! deciduous tooth +intersection_of: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0018617 +name: primary lower tooth +synonym: "deciduous lower tooth" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/245628009 +is_a: UBERON:0003268 ! tooth of lower jaw +is_a: UBERON:0007115 ! deciduous tooth +intersection_of: UBERON:0007115 ! deciduous tooth +intersection_of: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0018621 +name: upper canine tooth +synonym: "maxillary canine tooth" EXACT [] +synonym: "upper canine" EXACT [] +synonym: "upper cuspid" EXACT [] +is_a: UBERON:0003267 ! tooth of upper jaw +is_a: UBERON:0003674 ! cuspid +intersection_of: UBERON:0003674 ! cuspid +intersection_of: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0018622 +name: lower canine tooth +synonym: "lower canine" EXACT [] +synonym: "lower cuspid" EXACT [] +synonym: "mandibular canine tooth" EXACT [] +is_a: UBERON:0003268 ! tooth of lower jaw +is_a: UBERON:0003674 ! cuspid +intersection_of: UBERON:0003674 ! cuspid +intersection_of: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0018623 +name: lower secondary incisor tooth +synonym: "lower permanent incisor tooth" EXACT [FMA:55713] +synonym: "mandibular secondary incisor tooth" EXACT [FMA:55713] +synonym: "permanent lower incisor tooth" RELATED [FMA:55713] +xref: FMA:55713 +is_a: UBERON:0003451 ! lower jaw incisor +is_a: UBERON:0018550 ! secondary incisor tooth +is_a: UBERON:0018614 ! permanent lower tooth +intersection_of: UBERON:0018550 ! secondary incisor tooth +intersection_of: part_of UBERON:0001710 ! lower jaw region + +[Term] +id: UBERON:0018632 +name: obsolete upper primary canine tooth +is_obsolete: true + +[Term] +id: UBERON:0018640 +name: premolar 2 +synonym: "second premolar tooth" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/422370006 +is_a: UBERON:0007120 ! premolar tooth + +[Term] +id: UBERON:0018643 +name: deciduous molar tooth 2 +synonym: "deciduous second molar tooth" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/422595006 +is_a: UBERON:0013616 ! primary molar tooth +is_a: UBERON:0018606 ! molar tooth 2 +intersection_of: UBERON:0018606 ! molar tooth 2 +intersection_of: part_of UBERON:0007116 ! primary dentition + +[Term] +id: UBERON:0018644 +name: deciduous molar tooth 1 +synonym: "deciduous first molar tooth" EXACT [] +synonym: "deciduous molar 1" EXACT [] +synonym: "first temporarary molar" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/423890001 +is_a: UBERON:0013616 ! primary molar tooth +is_a: UBERON:0018376 ! molar tooth 1 +intersection_of: UBERON:0018376 ! molar tooth 1 +intersection_of: part_of UBERON:0007116 ! primary dentition + +[Term] +id: UBERON:0018645 +name: incisor region of dentition +def: "The subdivision of the dentition that consists entire of incisor teeth." [http://orcid.org/0000-0002-6601-2165] +synonym: "set of incisors" RELATED [] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000061 ! anatomical structure +intersection_of: composed_primarily_of UBERON:0001098 ! incisor tooth +intersection_of: part_of UBERON:0003672 ! dentition +relationship: composed_primarily_of UBERON:0001098 ! incisor tooth +relationship: part_of UBERON:0003672 ! dentition + +[Term] +id: UBERON:0018646 +name: premolar tooth 5 +def: "The premolar tooth of the upper or lower jaw that is phylogenetically number 5" [UBERON:cjm] +synonym: "d5" RELATED ABBREVIATION [] +synonym: "premolar 5" EXACT [] +is_a: UBERON:0007120 ! premolar tooth + +[Term] +id: UBERON:0018647 +name: premolar tooth 4 +def: "The premolar tooth of the upper or lower jaw that is phylogenetically number 4" [UBERON:cjm] +synonym: "d4" RELATED ABBREVIATION [] +synonym: "premolar 4" EXACT [] +is_a: UBERON:0007120 ! premolar tooth + +[Term] +id: UBERON:0018648 +name: upper premolar 4 +comment: Often called the carnassial tooth, this tooth acts with its counterpart in the lower jaw (the 1st molar in that case) to slice food in a scissoring action.[MURDOCH:2142] +synonym: "carnassial tooth" RELATED [MURDOCH:2142] +is_a: UBERON:0016944 ! upper premolar tooth +is_a: UBERON:0018647 ! premolar tooth 4 +intersection_of: UBERON:0018647 ! premolar tooth 4 +intersection_of: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0018649 +name: cardiac muscle tissue of ventricle +synonym: "ventricular cardiac muscle tissue" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "ventricular heart muscle" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "ventricular muscle" RELATED [http://orcid.org/0000-0002-6601-2165] +xref: FMA:83450 +is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium +intersection_of: UBERON:0001133 ! cardiac muscle tissue +intersection_of: part_of UBERON:0002082 ! cardiac ventricle +relationship: part_of UBERON:0001083 ! myocardium of ventricle + +[Term] +id: UBERON:0018650 +name: annelid peristomium +def: "The peristomium is the second body segment in an annelid worm's body in the anterior end. It is directly behind the prostomium and contains the mouth, tentacular cirri, and sometimes feeding palps, which may instead occur on the prostomium. If an eversible pharynx is present, it is contained in this segment as well, and can fill up to 20 segments when inverted, depending on the species." [http://en.wikipedia.org/wiki/Peristomium] +synonym: "peristomium" BROAD [http://en.wikipedia.org/wiki/Peristomium] +xref: http://en.wikipedia.org/wiki/Peristomium +is_a: UBERON:0000914 ! organismal segment + +[Term] +id: UBERON:0018651 +name: foramen lacerum +def: "A triangular hole in the base of the skull located at the base of the medial pterygoid plate." [http://en.wikipedia.org/wiki/Foramen_lacerum] +xref: FMA:54809 +xref: Foramen:lacerum +xref: http://www.snomedbrowser.com/Codes/Details/369444009 +is_a: UBERON:0013685 {source="FMA"} ! foramen of skull + +[Term] +id: UBERON:0018652 +name: maxillary recess +def: "A hollow space in the skull of carnivores, which do not exhibit a maxillary sinus." [http://orcid.org/0000-0002-6601-2165] +synonym: "recessus maxillaris" EXACT LATIN [] +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0003129 ! skull + +[Term] +id: UBERON:0018653 +name: anterior ethmoidal foramen +def: "The anterior ethmoidal foramen, situated about the middle of the lateral margin of the olfactory groove, transmits the anterior ethmoidal vessels and the anterior ethmoidal nerve; the nerve runs in a groove along the lateral edge of the cribriform plate to the slit-like opening above mentioned." [http://en.wikipedia.org/wiki/Anterior_ethmoidal_foramen] +synonym: "foramina ethmoidalia anterius" EXACT LATIN [] +xref: FMA:53135 +xref: http://en.wikipedia.org/wiki/Anterior_ethmoidal_foramen +is_a: UBERON:0013685 {source="FMA"} ! foramen of skull +disjoint_from: UBERON:0018654 {source="lexical"} ! posterior ethmoidal foramen + +[Term] +id: UBERON:0018654 +name: posterior ethmoidal foramen +def: "The posterior ethmoidal foramen opens at the back part of this margin under cover of the projecting lamina of the sphenoid, and transmits the posterior ethmoidal vessels and nerve." [http://en.wikipedia.org/wiki/Posterior_ethmoidal_foramen] +synonym: "foramina ethmoidalia posterius" EXACT LATIN [] +xref: FMA:53136 +xref: http://en.wikipedia.org/wiki/Posterior_ethmoidal_foramen +is_a: UBERON:0013685 {source="FMA"} ! foramen of skull + +[Term] +id: UBERON:0018655 +name: pars endotympanica +def: "This is present in the cat and forms the large medial part of the Bulla tympanica. It is not to be regarded as a part of the pars tympanica, which ossifies directly from connective tissue, whereas the Pars endotympanica is preformed in cartilage. The Septum bullae in the cat is formed by the Pars tympanica as well as by the Pars endotympanica(NOMINA ANATOMICA VETERINARIA (2005))." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0013190 ! entotympanic bone + +[Term] +id: UBERON:0018656 +name: puparium +def: "A chitin-based cuticular shell derived from the cuticle of the final larval instar that surrounds the pupal form of the organism" [http://en.wikipedia.org/wiki/Pupa#Puparium] +synonym: "puparia" RELATED PLURAL [] +xref: FBbt:00004987 +is_a: UBERON:0001001 {source="FBbt"} ! chitin-based cuticle +is_a: UBERON:0018657 ! pupal case +relationship: develops_from UBERON:0002548 ! larva + +[Term] +id: UBERON:0018657 +name: pupal case +def: "Any acellular shell or covering that surrounds the pupal form of an insect" [http://orcid.org/0000-0002-6601-2165] +subset: grouping_class +is_a: UBERON:0000476 ! acellular anatomical structure +intersection_of: UBERON:0000476 ! acellular anatomical structure +intersection_of: surrounds UBERON:0003143 ! pupa +relationship: surrounds UBERON:0003143 ! pupa + +[Term] +id: UBERON:0018663 +name: recessus basilaris +def: "An opening of the otic duct within the inner ear. The recessus basilaris can open to the saccule (in frogs) or the lagena (in salamanders and caecilians). The sensory epithelium of the recessus basilaris is the basilar papilla (or papilla basilaris). Reference: Lewis, E.R. and R.E. Lombard. 1988. The amphibian inner ear. Pp. 93-123 in Fritszch, B., et al. (eds.), The Evolution of the Amphibian Auditory System. Wiley & Sons. [curated by D. Blackburn]" [PHENOSCAPE:wd] +synonym: "basilar papillar recess" EXACT [] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001846 ! internal ear + +[Term] +id: UBERON:0018664 +name: neck of bone element +def: "the neck region of a bone organ." [http://orcid.org/0000-0002-6601-2165] +synonym: "bone neck" EXACT [] +synonym: "neck of bone" EXACT [] +is_a: UBERON:0001560 ! neck of organ +is_a: UBERON:0005913 {notes="https://github.com/obophenotype/uberon/wiki/Hidden-GCIs"} ! zone of bone organ +intersection_of: UBERON:0001560 ! neck of organ +intersection_of: part_of UBERON:0001474 ! bone element + +[Term] +id: UBERON:0018667 +name: neck of scapula +synonym: "anatomical neck of scapula" EXACT [FMA:23254] +synonym: "scapular neck" EXACT [FMA:23254] +xref: FMA:23254 +xref: http://www.snomedbrowser.com/Codes/Details/181915009 +is_a: UBERON:0018664 ! neck of bone element +intersection_of: UBERON:0001560 ! neck of organ +intersection_of: part_of UBERON:0006849 ! scapula +relationship: part_of UBERON:0006849 ! scapula + +[Term] +id: UBERON:0018669 +name: obsolete neck of humerus +is_obsolete: true +replaced_by: UBERON:4200172 + +[Term] +id: UBERON:0018673 +name: neck of fibula +synonym: "fibula neck" EXACT [FMA:35508] +synonym: "fibular neck" EXACT [] +xref: EMAPA:37891 {source="MA:th"} +xref: FMA:35508 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +is_a: UBERON:0018664 ! neck of bone element +intersection_of: UBERON:0001560 ! neck of organ +intersection_of: part_of UBERON:0001446 ! fibula +relationship: part_of UBERON:0001446 ! fibula + +[Term] +id: UBERON:0018674 +name: heart vasculature +def: "An interconnected tubular multi-tissue structure that contains fluid that is actively transported around the heart." [ZFA:0005811, ZFA:CVS] +synonym: "cardiac vasculature" EXACT [FMA:73747] +xref: FMA:73747 +xref: ZFA:0005811 +is_a: UBERON:0002201 ! vasculature of trunk +is_a: UBERON:0006876 ! vasculature of organ +intersection_of: UBERON:0002049 ! vasculature +intersection_of: part_of UBERON:0000948 ! heart +relationship: part_of UBERON:0000948 ! heart + +[Term] +id: UBERON:0018675 +name: pelvic splanchnic nerve +def: "A splanchnic nerves that arises from sacral spinal nerves S2, S3, S4 to provide parasympathetic innervation to the hindgut." [http://en.wikipedia.org/wiki/Pelvic_splanchnic_nerves] +synonym: "nervi erigentes" RELATED LATIN [http://en.wikipedia.org/wiki/Pelvic_splanchnic_nerves] +synonym: "nervi pelvici splanchnici" RELATED LATIN [http://en.wikipedia.org/wiki/Pelvic_splanchnic_nerves] +synonym: "nervi splanchnici pelvici" RELATED [http://en.wikipedia.org/wiki/Pelvic_splanchnic_nerves] +synonym: "nn erigentes" RELATED [http://en.wikipedia.org/wiki/Pelvic_splanchnic_nerves] +synonym: "pelvic splanchnic nerve" RELATED [http://en.wikipedia.org/wiki/Pelvic_splanchnic_nerves] +synonym: "pelvic splanchnic parasympathetic nerve" EXACT [EHDAA2:0001432] +xref: EHDAA2:0001432 +xref: EHDAA:5628 +xref: FMA:16901 +xref: http://en.wikipedia.org/wiki/Pelvic_splanchnic_nerves +xref: http://www.snomedbrowser.com/Codes/Details/311223006 +is_a: UBERON:0003715 {source="FMA"} ! splanchnic nerve +is_a: UBERON:0004293 ! parasympathetic nerve + +[Term] +id: UBERON:0018676 +name: renal nerve plexus +def: "The renal plexus is formed by filaments from the celiac plexus, the aorticorenal ganglion, and the aortic plexus . It is joined also by the least splanchnic nerve. The nerves from these sources, fifteen or twenty in number, have a few ganglia developed upon them. They accompany the branches of the renal artery into the kidney; some filaments are distributed to the spermatic plexus and, on the right side, to the inferior vena cava." [http://en.wikipedia.org/wiki/Renal_plexus] +synonym: "plexus renalis" EXACT [FMA:TA] +synonym: "renal plexus" EXACT [FMA:6636] +xref: FMA:6636 +xref: http://www.snomedbrowser.com/Codes/Details/280526000 +xref: Renal:plexus +is_a: UBERON:0001816 {source="FMA"} ! autonomic nerve plexus + +[Term] +id: UBERON:0018679 +name: thoracic splanchnic nerve +def: "Thoracic splanchnic nerves are splanchnic nerves that arise from the sympathetic trunk in the thorax and travel inferiorly to provide sympathetic innervation to the abdomen. The nerves contain preganglionic sympathetic and general visceral afferent fibers." [http://en.wikipedia.org/wiki/Thoracic_splanchnic_nerves] +xref: FMA:6280 +xref: http://en.wikipedia.org/wiki/Thoracic_splanchnic_nerves +is_a: UBERON:0003715 ! splanchnic nerve +is_a: UBERON:0003824 ! nerve of thoracic segment +intersection_of: UBERON:0003715 ! splanchnic nerve +intersection_of: connects UBERON:0004863 ! thoracic sympathetic nerve trunk +relationship: branching_part_of UBERON:0004863 {source="FMA"} ! thoracic sympathetic nerve trunk +relationship: connects UBERON:0004863 ! thoracic sympathetic nerve trunk +relationship: part_of UBERON:0004863 ! thoracic sympathetic nerve trunk + +[Term] +id: UBERON:0018680 +name: greater splanchnic nerve +comment: The nerve travels through the diaphragm and enters the abdominal cavity, where its fibers synapse at the celiac ganglia. The nerve contributes to the celiac plexus, a network of nerves located in the vicinity of where the celiac trunk branches from the abdominal aorta. The fibers in this nerve modulate the activity of the enteric nervous system of the foregut. They also provide the sympathetic innervation to the adrenal medulla, stimulating catecholamine release. +synonym: "greater thoracic splanchnic nerve" EXACT [FMA:6281] +xref: FMA:6281 +xref: http://www.snomedbrowser.com/Codes/Details/280503007 +is_a: UBERON:0018679 {source="FMA"} ! thoracic splanchnic nerve + +[Term] +id: UBERON:0018681 +name: lesser splanchnic nerve +comment: The nerve travels inferiorly, lateral to the greater splanchnic nerve. Its fibers synapse with their postganglionic counterparts in the superior mesenteric ganglia, or in the aorticorenal ganglion. The nerve modulates the activity of the enteric nervous system of the midgut. +synonym: "lesser thoracic splanchnic nerve" EXACT [FMA:6282] +xref: FMA:6282 +xref: http://www.snomedbrowser.com/Codes/Details/280505000 +is_a: UBERON:0018679 {source="FMA"} ! thoracic splanchnic nerve + +[Term] +id: UBERON:0018683 +name: lumbar splanchnic nerve +def: "The lumbar splanchnic nerves are splanchnic nerves that arise from the lumbar part of the sympathetic trunk and travel to an adjacent plexus near the aorta. They are originated from L1 and L2. These nerves contain preganglionic sympathetic and visceral afferent fibers. The site of synapse is found in the prevertebral ganglia and innervate the smooth muscle and glands of the pelvic viscera and hindgut." [http://en.wikipedia.org/wiki/Lumbar_splanchnic_nerves] +synonym: "lumbar splanchnic nerve" RELATED [http://en.wikipedia.org/wiki/Lumbar_splanchnic_nerves] +xref: FMA:6287 +xref: http://en.wikipedia.org/wiki/Lumbar_splanchnic_nerves +xref: http://www.snomedbrowser.com/Codes/Details/280507008 +is_a: UBERON:0003715 {source="FMA"} ! splanchnic nerve + +[Term] +id: UBERON:0018684 +name: sacral splanchnic nerve +def: "A splanchnic nerve that connects the inferior hypogastric plexus to the sympathetic trunk in the pelvis." [http://en.wikipedia.org/wiki/Sacral_splanchnic_nerves] +xref: FMA:6288 +xref: http://en.wikipedia.org/wiki/Sacral_splanchnic_nerves +is_a: UBERON:0003715 {source="FMA"} ! splanchnic nerve + +[Term] +id: UBERON:0018685 +name: nursing stage +def: "A mammalian developmental stage that covers the period from birth until weaning." [Bgee:AN] +synonym: "suckling stage" EXACT [] +is_a: UBERON:0000105 ! life cycle stage +relationship: has_part UBERON:0007221 ! neonate stage +relationship: part_of UBERON:0000092 ! post-embryonic stage + +[Term] +id: UBERON:0018687 +name: glial limiting membrane +def: "The meshwork of astrocytic foot processes (glial end feet) covered by a basal lamina adjacent to the inner pial surface of the central nervous system." [http://neurolex.org/wiki/Nlx_subcell_100209] +synonym: "glia limitans" EXACT LATIN [http://en.wikipedia.org/wiki/Glia_limitans] +xref: Glia:limitans +xref: NIF_Subcellular:nlx_subcell_100209 +is_a: UBERON:0005162 ! multi cell part structure +relationship: immediately_deep_to UBERON:0002361 ! pia mater +relationship: immediately_superficial_to UBERON:0000956 ! cerebral cortex +relationship: part_of UBERON:0000120 ! blood brain barrier + +[Term] +id: UBERON:0018688 +name: hindlimb feather +def: "A feather that is part of a hindlimb." [http://orcid.org/0000-0002-6601-2165] +synonym: "feather of hindlimb" EXACT [] +is_a: UBERON:0000022 ! feather +intersection_of: UBERON:0000022 ! feather +intersection_of: part_of UBERON:0002103 ! hindlimb +relationship: part_of UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0018689 +name: crural feather +def: "A feather that is part of a hindlimb zeugopod." [http://orcid.org/0000-0002-6601-2165] +synonym: "tibial feather" EXACT [] +is_a: UBERON:0018688 ! hindlimb feather +intersection_of: UBERON:0000022 ! feather +intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod +relationship: part_of UBERON:0003823 ! hindlimb zeugopod + +[Term] +id: UBERON:0018690 +name: feather covering of ventral part of tail +synonym: "crissum feathers" RELATED [] +synonym: "undertail covert" RELATED [] +is_a: UBERON:0013512 ! row of feathers +intersection_of: UBERON:0013512 ! row of feathers +intersection_of: part_of UBERON:0018691 ! ventral side of post-anal tail +relationship: part_of UBERON:0018691 ! ventral side of post-anal tail + +[Term] +id: UBERON:0018691 +name: ventral side of post-anal tail +is_a: UBERON:0034929 ! external soft tissue zone +intersection_of: UBERON:0034929 ! external soft tissue zone +intersection_of: in_ventral_side_of UBERON:0007812 ! post-anal tail +relationship: in_ventral_side_of UBERON:0007812 ! post-anal tail +relationship: part_of UBERON:0007812 ! post-anal tail +relationship: part_of UBERON:0013235 ! ventrum + +[Term] +id: UBERON:0018692 +name: dorsal side of post-anal tail +is_a: UBERON:0034929 ! external soft tissue zone +intersection_of: UBERON:0034929 ! external soft tissue zone +intersection_of: in_dorsal_side_of UBERON:0007812 ! post-anal tail +relationship: in_dorsal_side_of UBERON:0007812 ! post-anal tail +relationship: part_of UBERON:0001137 ! dorsum +relationship: part_of UBERON:0007812 ! post-anal tail + +[Term] +id: UBERON:0018707 +name: bladder organ +def: "A membranous sac in animals that serves as the receptacle of a liquid or contains gas." [BTO:0000123] +synonym: "bladder" NARROW [BTO:0000123] +xref: BTO:0000123 +is_a: UBERON:0000489 ! cavitated compound organ +is_a: UBERON:0009856 ! sac +relationship: location_of UBERON:0000463 ! organism substance + +[Term] +id: UBERON:0019042 +name: reproductive system mucosa +synonym: "genital mucosa" EXACT [BTO:0002439] +xref: BTO:0002439 +is_a: UBERON:0000344 ! mucosa +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0000990 ! reproductive system + +[Term] +id: UBERON:0019143 +name: intramuscular adipose tissue +def: "Adipose tissue which is located throughout skeletal muscle and is responsible for the marbling seen in certain cuts of beef. In humans, excess accumulation of intramuscular fat is associated with insulin resistance and type 2 diabetes." [BTO:0004043] +synonym: "intramuscular fat" RELATED [BTO:0004043] +xref: BTO:0004043 +is_a: UBERON:0001013 ! adipose tissue +intersection_of: UBERON:0001013 ! adipose tissue +intersection_of: part_of UBERON:0014892 ! skeletal muscle organ +relationship: part_of UBERON:0014892 ! skeletal muscle organ + +[Term] +id: UBERON:0019189 +name: carotid artery endothelium +synonym: "carotid endothelium" RELATED [BTO:0004626] +synonym: "carotid epithelium" RELATED [] +xref: BTO:0004626 +is_a: UBERON:0001917 ! endothelium of artery +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0005396 ! carotid artery segment +relationship: part_of UBERON:0005396 ! carotid artery segment + +[Term] +id: UBERON:0019190 +name: mucous gland of lung +synonym: "bronchial gland" EXACT [FMA:13119] +synonym: "bronchial mucous gland" EXACT [FMA:13119] +synonym: "peribronchial gland" EXACT [BTO:0004638] +xref: BTO:0004638 +xref: FMA:13119 +xref: http://www.snomedbrowser.com/Codes/Details/88410004 +is_a: UBERON:0000414 ! mucous gland +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0005181 ! thoracic segment organ +is_a: UBERON:0036225 ! respiratory system gland +intersection_of: UBERON:0000414 ! mucous gland +intersection_of: part_of UBERON:0002048 ! lung +relationship: part_of UBERON:0002048 ! lung + +[Term] +id: UBERON:0019196 +name: iliac artery endothelium +xref: BTO:0004661 +is_a: UBERON:0001917 ! endothelium of artery +intersection_of: UBERON:0001986 ! endothelium +intersection_of: part_of UBERON:0005609 ! iliac artery +relationship: part_of UBERON:0005609 ! iliac artery + +[Term] +id: UBERON:0019197 +name: dorsal nerve of penis +def: "The deep terminal division of the pudendal nerve that runs along the dorsum of the penis and innervates the the corpus cavernosum penis, the prepuce and the glans penis." [http://en.wikipedia.org/wiki/Dorsal_nerve_of_the_penis, http://medical-dictionary.thefreedictionary.com/dorsal%20nerve%20of%20penis] +synonym: "dorsal nerve of penis" RELATED [http://en.wikipedia.org/wiki/Dorsal_nerve_of_the_penis] +synonym: "dorsal nerves of the penis" RELATED [http://en.wikipedia.org/wiki/Dorsal_nerve_of_the_penis] +synonym: "nervus dorsalis penis" EXACT LATIN [FMA:21869] +synonym: "nervus dorsalis penis " EXACT LATIN [FMA:21869, FMA:TA] +xref: FMA:21869 +xref: http://en.wikipedia.org/wiki/Dorsal_nerve_of_the_penis +xref: http://www.snomedbrowser.com/Codes/Details/306800005 +is_a: UBERON:0003444 ! pelvis nerve +is_a: UBERON:0035649 ! nerve of penis +intersection_of: UBERON:0001021 ! nerve +intersection_of: branching_part_of UBERON:0011390 ! pudendal nerve +intersection_of: innervates UBERON:0000989 ! penis +intersection_of: innervates UBERON:0001299 ! glans penis +intersection_of: innervates UBERON:0001332 ! prepuce of penis +intersection_of: innervates UBERON:0004713 ! corpus cavernosum penis +relationship: branching_part_of UBERON:0011390 ! pudendal nerve +relationship: innervates UBERON:0001299 ! glans penis +relationship: innervates UBERON:0001332 ! prepuce of penis +relationship: innervates UBERON:0004713 ! corpus cavernosum penis +relationship: part_of UBERON:0000989 {source="FMA"} ! penis +relationship: part_of UBERON:0011390 ! pudendal nerve + +[Term] +id: UBERON:0019198 +name: dorsal nerve of clitoris +def: "The deep terminal division of the pudendal nerve that runs along the dorsum of the clitoral shaft and innervates the the glans clitoris." [http://en.wikipedia.org/wiki/Dorsal_nerve_of_clitoris, http://medical-dictionary.thefreedictionary.com/dorsal%20nerve%20of%20clitoris] +synonym: "dorsal nerve of the clitoris" RELATED [http://en.wikipedia.org/wiki/Dorsal_nerve_of_clitoris] +synonym: "nervus dorsalis clitoridis" EXACT [FMA:21870] +xref: FMA:21870 +xref: http://en.wikipedia.org/wiki/Dorsal_nerve_of_clitoris +xref: http://www.snomedbrowser.com/Codes/Details/367687005 +is_a: UBERON:0003444 ! pelvis nerve +is_a: UBERON:0035650 ! nerve of clitoris +intersection_of: UBERON:0001021 ! nerve +intersection_of: branching_part_of UBERON:0011390 ! pudendal nerve +intersection_of: innervates UBERON:0002411 ! clitoris +intersection_of: innervates UBERON:0006653 ! glans clitoris +relationship: branching_part_of UBERON:0011390 ! pudendal nerve +relationship: innervates UBERON:0006653 ! glans clitoris +relationship: part_of UBERON:0002411 {source="FMA"} ! clitoris +relationship: part_of UBERON:0011390 ! pudendal nerve + +[Term] +id: UBERON:0019199 +name: lateral side of chest +synonym: "side of chest" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/182332004 +is_a: UBERON:0000475 ! organism subdivision +relationship: part_of UBERON:0001443 {source="FMA"} ! chest + +[Term] +id: UBERON:0019200 +name: skin of anterior chest +def: "Zone of skin that is part of the anterior region of the chest" [http://orcid.org/0000-0002-6601-2165] +subset: pheno_slim +synonym: "anterior chest skin" EXACT [FMA:10461] +synonym: "skin of anterior part of thorax" EXACT [FMA:10461] +synonym: "skin of ventral chest" EXACT [HP:0007542] +synonym: "ventral chest skin" EXACT [HP:0007542] +xref: FMA:10461 +is_a: UBERON:0001868 ! skin of chest +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0016416 ! anterior chest +relationship: part_of UBERON:0016416 ! anterior chest + +[Term] +id: UBERON:0019201 +name: gemellus muscle +def: "One of the two small muscular fasciculi, accessories to the tendon of the Obturator internus which is received into a groove between them" [http://en.wikipedia.org/wiki/Inferior_gemellus_muscle, http://en.wikipedia.org/wiki/Superior_gemellus_muscle] +xref: EMAPA:36227 +xref: FMA:22319 +xref: http://www.snomedbrowser.com/Codes/Details/245021004 +is_a: UBERON:0004252 {source="EMAPA"} ! hindlimb stylopod muscle +relationship: has_muscle_insertion UBERON:0034988 ! tendon of obturator internus +relationship: has_muscle_origin UBERON:0001274 ! ischium + +[Term] +id: UBERON:0019202 +name: inferior gemellus muscle +def: "Gemellus muscle that arises from the upper part of the tuberosity of the ischium, immediately below the groove for the Obturator internus tendon. It blends with the lower part of the tendon of the Obturator internus, and is inserted with it into the medial surface of the greater trochanter." [http://en.wikipedia.org/wiki/Inferior_gemellus_muscle] +synonym: "gemellus inferior" EXACT [EMAPA:36228] +synonym: "gemellus inferior" RELATED [http://en.wikipedia.org/wiki/Inferior_gemellus_muscle] +synonym: "gemellus inferior muscle" RELATED [http://en.wikipedia.org/wiki/Inferior_gemellus_muscle] +synonym: "inferior gemellus" EXACT [FMA:22320] +synonym: "musculus gemellus inferior" EXACT LATIN [FMA:TA] +xref: EMAPA:36228 +xref: FMA:22320 +xref: http://en.wikipedia.org/wiki/Inferior_gemellus_muscle +is_a: UBERON:0019201 ! gemellus muscle +relationship: has_muscle_origin UBERON:0034983 ! ischial tuberosity +relationship: innervated_by UBERON:0034984 ! nerve to quadratus femoris + +[Term] +id: UBERON:0019203 +name: superior gemellus muscle +def: "The smaller of the two gemellus muscles that arises from the outer surface of the spine of the ischium, blends with the upper part of the tendon of the Obturator internus, and is inserted with it into the medial surface of the greater trochanter[WP]." [http://en.wikipedia.org/wiki/Superior_gemellus_muscle] +synonym: "cemellus superior" RELATED [http://en.wikipedia.org/wiki/Superior_gemellus_muscle] +synonym: "gemellus superior" EXACT [EMAPA:36229] +synonym: "gemellus superior" RELATED [http://en.wikipedia.org/wiki/Superior_gemellus_muscle] +synonym: "gemellus superior muscle" RELATED [http://en.wikipedia.org/wiki/Superior_gemellus_muscle] +synonym: "musculus gemellus superior" EXACT LATIN [FMA:TA] +synonym: "superior cemellus" RELATED [http://en.wikipedia.org/wiki/Superior_gemellus_muscle] +synonym: "superior cemellus muscle" RELATED [http://en.wikipedia.org/wiki/Superior_gemellus_muscle] +synonym: "superior gemellus" EXACT [FMA:22318] +synonym: "superior gemellus" RELATED [http://en.wikipedia.org/wiki/Superior_gemellus_muscle] +xref: EMAPA:36229 +xref: FMA:22318 +xref: http://en.wikipedia.org/wiki/Superior_gemellus_muscle +xref: http://www.snomedbrowser.com/Codes/Details/245022006 +is_a: UBERON:0019201 ! gemellus muscle +relationship: has_muscle_origin UBERON:0009000 ! ischial spine +relationship: innervated_by UBERON:0005465 ! obturator nerve + +[Term] +id: UBERON:0019204 +name: skin epithelium +def: "Any region of epithelium that is part of a skin region." [http://orcid.org/0000-0002-6601-2165] +xref: BTO:0004382 +is_a: UBERON:0010371 ! ecto-epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000014 ! zone of skin +relationship: part_of UBERON:0000014 ! zone of skin + +[Term] +id: UBERON:0019206 +name: tongue papilla epithelium +xref: EMAPA:35869 +xref: MA:0003178 +is_a: UBERON:0002424 ! oral epithelium +is_a: UBERON:0003357 ! epithelium of tongue +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001726 ! papilla of tongue +relationship: part_of UBERON:0001726 ! papilla of tongue + +[Term] +id: UBERON:0019207 +name: chorioretinal region +def: "The part of the eye that consists of both the retina and the optic choroid" [http://orcid.org/0000-0002-6601-2165, UBERON:drseb] +subset: pheno_slim +synonym: "chorioretina" EXACT [] +synonym: "choroid and retina" EXACT [] +synonym: "retinachoroid" EXACT [] +synonym: "retinachoroidal region" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/110701000 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: has_part UBERON:0000966 ! retina +relationship: has_part UBERON:0001776 ! optic choroid +relationship: part_of UBERON:0010230 ! eyeball of camera-type eye + +[Term] +id: UBERON:0019208 +name: anterior pole of lens +def: "the central point on the anterior surface of the lens." [http://www.medilexicon.com/medicaldictionary.php] +synonym: "polus anterior (lens)" EXACT [FMA:58897] +synonym: "polus anterior lentis" EXACT LATIN [] +xref: FMA:58897 +xref: http://www.snomedbrowser.com/Codes/Details/302143002 +xref: NCIT:C32103 +is_a: UBERON:0019210 ! pole of lens + +[Term] +id: UBERON:0019210 +name: pole of lens +def: "A central point or region on the anterior or posterior surface of the lens" [http://orcid.org/0000-0002-6601-2165] +synonym: "lens pole" EXACT [] +synonym: "lens zone" EXACT [FMA:58067] +synonym: "zone of lens" RELATED [FMA:58067] +xref: FMA:58067 +xref: http://www.snomedbrowser.com/Codes/Details/280630009 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0034944 {source="FMA"} ! zone of organ +relationship: part_of UBERON:0000965 ! lens of camera-type eye + +[Term] +id: UBERON:0019211 +name: supcapsular region of anterior region of lens +comment: See https://github.com/obophenotype/uberon/issues/599 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: adjacent_to UBERON:0001804 ! capsule of lens +relationship: part_of UBERON:0019208 ! anterior pole of lens + +[Term] +id: UBERON:0019212 +name: supcapsular region of posterior region of lens +comment: See https://github.com/obophenotype/uberon/issues/599 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: adjacent_to UBERON:0001804 ! capsule of lens +relationship: part_of UBERON:0016459 ! posterior pole of lens + +[Term] +id: UBERON:0019221 +name: digit 1 or 5 +def: "Either of the outermost digits in a five-digit autopod, or their phylogenetic equivalent." [UBERON:cjm] +synonym: "lateral digit" RELATED HUMAN_PREFERRED [] +synonym: "outer digit" RELATED HUMAN_PREFERRED [] +synonym: "outermost digit" RELATED HUMAN_PREFERRED [] +is_a: UBERON:0002544 ! digit +union_of: UBERON:0006048 ! digit 1 +union_of: UBERON:0006052 ! digit 5 + +[Term] +id: UBERON:0019222 +name: digit 2, 3 or 4 +def: "Any of the three medial digits in a five-digit autopod, or their phylogenetic equivalent." [UBERON:cjm] +subset: pheno_slim +synonym: "medial digit" RELATED HUMAN_PREFERRED [] +synonym: "mesoaxial digit" RELATED HUMAN_PREFERRED [] +is_a: UBERON:0002544 ! digit +union_of: UBERON:0006049 ! digit 2 +union_of: UBERON:0006050 ! digit 3 +union_of: UBERON:0006051 ! digit 4 + +[Term] +id: UBERON:0019231 +name: manual digit 1 or 5 +synonym: "lateral finger" RELATED HUMAN_PREFERRED [] +synonym: "lateral manual digit" RELATED HUMAN_PREFERRED [] +synonym: "outer manual digit" RELATED HUMAN_PREFERRED [] +synonym: "outermost manual digit" RELATED HUMAN_PREFERRED [] +is_a: UBERON:0002389 ! manual digit +is_a: UBERON:0019221 ! digit 1 or 5 +union_of: UBERON:0001463 ! manual digit 1 +union_of: UBERON:0003625 ! manual digit 5 + +[Term] +id: UBERON:0019232 +name: manual digit 2, 3 or 4 +subset: pheno_slim +synonym: "medial manual digit" RELATED HUMAN_PREFERRED [] +synonym: "mesoaxial manual digit" RELATED HUMAN_PREFERRED [] +synonym: "mesoxaxial finger" RELATED HUMAN_PREFERRED [] +is_a: UBERON:0002389 ! manual digit +is_a: UBERON:0019222 ! digit 2, 3 or 4 +union_of: UBERON:0003622 ! manual digit 2 +union_of: UBERON:0003623 ! manual digit 3 +union_of: UBERON:0003624 ! manual digit 4 + +[Term] +id: UBERON:0019241 +name: pedal digit 1 or 5 +synonym: "lateral pedal digit" RELATED HUMAN_PREFERRED [] +synonym: "lateral toe" RELATED HUMAN_PREFERRED [] +synonym: "outer pedal digit" RELATED HUMAN_PREFERRED [] +synonym: "outermost pedal digit" RELATED HUMAN_PREFERRED [] +is_a: UBERON:0001466 ! pedal digit +is_a: UBERON:0019221 ! digit 1 or 5 +union_of: UBERON:0003631 ! pedal digit 1 +union_of: UBERON:0003635 ! pedal digit 5 + +[Term] +id: UBERON:0019242 +name: pedal digit 2, 3 or 4 +subset: pheno_slim +synonym: "medial pedal digit" RELATED HUMAN_PREFERRED [] +synonym: "mesoaxial pedal digit" RELATED HUMAN_PREFERRED [] +synonym: "mesoxaxial ftoe" RELATED HUMAN_PREFERRED [] +is_a: UBERON:0001466 ! pedal digit +is_a: UBERON:0019222 ! digit 2, 3 or 4 +union_of: UBERON:0003632 ! pedal digit 2 +union_of: UBERON:0003633 ! pedal digit 3 +union_of: UBERON:0003634 ! pedal digit 4 + +[Term] +id: UBERON:0019243 +name: skin crease +synonym: "skin groove" RELATED [] +xref: http://www.snomedbrowser.com/Codes/Details/280385004 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0006846 ! surface groove +is_a: UBERON:3000961 ! external integument structure +relationship: part_of UBERON:0000014 ! zone of skin + +[Term] +id: UBERON:0019246 +name: palmar skin crease +subset: pheno_slim +synonym: "skin crease of palmar part of manus" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/244159001 +is_a: UBERON:0019243 ! skin crease +is_a: UBERON:3000981 ! limb external integument structure +intersection_of: UBERON:0019243 ! skin crease +intersection_of: part_of UBERON:0008878 ! palmar part of manus +relationship: part_of UBERON:0008878 ! palmar part of manus + +[Term] +id: UBERON:0019247 +name: plantar skin crease +synonym: "skin crease of plantar part of pes" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/244192007 +is_a: UBERON:0019243 ! skin crease +is_a: UBERON:3000981 ! limb external integument structure +intersection_of: UBERON:0019243 ! skin crease +intersection_of: part_of UBERON:0008338 ! plantar part of pes +relationship: part_of UBERON:0008338 ! plantar part of pes + +[Term] +id: UBERON:0019248 +name: early embryo +xref: EMAPA:36032 +is_a: UBERON:0000922 ! embryo + +[Term] +id: UBERON:0019249 +name: 2-cell stage embryo +synonym: "2-cell embryo" RELATED [EMAPA:16036] +synonym: "two-cell embryo" RELATED [EMAPA:16036] +xref: EMAPA:16036 +is_a: UBERON:0019248 {source="EMAPA"} ! early embryo +intersection_of: UBERON:0000468 ! multicellular organism +intersection_of: existence_starts_and_ends_during UBERON:0007232 ! 2 cell stage +relationship: existence_starts_and_ends_during UBERON:0007232 ! 2 cell stage + +[Term] +id: UBERON:0019250 +name: 4-8 cell stage embryo +synonym: "4-8 cell embryo" RELATED [EMAPA:16037] +synonym: "four-to-eight cell embryo" RELATED [EMAPA:16037] +xref: EMAPA:16037 +is_a: UBERON:0019248 ! early embryo +intersection_of: UBERON:0000468 ! multicellular organism +intersection_of: existence_ends_during UBERON:0007236 ! 8 cell stage +intersection_of: existence_starts_during UBERON:0007233 ! 4 cell stage +relationship: existence_ends_during UBERON:0007236 ! 8 cell stage +relationship: existence_starts_during UBERON:0007233 ! 4 cell stage + +[Term] +id: UBERON:0019251 +name: 4-cell stage embryo +synonym: "4-cell embryo" RELATED [EMAPA:31864] +synonym: "four-cell embryo" RELATED [EMAPA:31864] +xref: EMAPA:31864 +is_a: UBERON:0019248 ! early embryo +intersection_of: UBERON:0000468 ! multicellular organism +intersection_of: existence_starts_and_ends_during UBERON:0007233 ! 4 cell stage +relationship: existence_starts_and_ends_during UBERON:0007233 ! 4 cell stage + +[Term] +id: UBERON:0019252 +name: 8-cell stage embryo +synonym: "8-cell embryo" RELATED [EMAPA:31865] +synonym: "eight-cell embryo" RELATED [EMAPA:31865] +xref: EMAPA:31865 +is_a: UBERON:0019250 {source="EMAPA"} ! 4-8 cell stage embryo +intersection_of: UBERON:0000468 ! multicellular organism +intersection_of: existence_starts_and_ends_during UBERON:0007236 ! 8 cell stage +relationship: existence_starts_and_ends_during UBERON:0007236 ! 8 cell stage + +[Term] +id: UBERON:0019253 +name: upper secondary incisor tooth +synonym: "maxillary secondary incisor tooth" EXACT [FMA:55712] +synonym: "upper permanent incisor" EXACT [] +synonym: "upper permanent incisor tooth" EXACT [FMA:55712] +xref: FMA:55712 +is_a: UBERON:0003450 ! upper jaw incisor +is_a: UBERON:0018550 ! secondary incisor tooth +is_a: UBERON:0018613 ! secondary upper tooth +intersection_of: UBERON:0001098 ! incisor tooth +intersection_of: part_of UBERON:0001709 ! upper jaw region +intersection_of: part_of UBERON:0007774 ! secondary dentition + +[Term] +id: UBERON:0019254 +name: upper eyelash +subset: pheno_slim +synonym: "eyelash of upper eyelid" EXACT [FMA:59408] +synonym: "hair of upper eyelid" RELATED [] +synonym: "upper eyelid cilia" RELATED PLURAL [] +synonym: "upper eyelid cilium" EXACT [] +synonym: "upper eyelid eyelash" EXACT [FMA:59408] +xref: FMA:59408 +is_a: UBERON:0001702 ! eyelash +is_a: UBERON:0010171 ! strand of hair of face +intersection_of: UBERON:0001702 ! eyelash +intersection_of: part_of UBERON:0001712 ! upper eyelid +relationship: part_of UBERON:0001712 ! upper eyelid + +[Term] +id: UBERON:0019255 +name: lower eyelash +subset: pheno_slim +synonym: "eyelash of lower eyelid" EXACT [FMA:59409] +synonym: "hair of lower eyelid" RELATED [] +synonym: "lower eyelid cilia" RELATED PLURAL [] +synonym: "lower eyelid cilium" EXACT [] +synonym: "lower eyelid eyelash" EXACT [FMA:59409] +xref: FMA:59409 +is_a: UBERON:0001702 ! eyelash +is_a: UBERON:0010171 ! strand of hair of face +intersection_of: UBERON:0001702 ! eyelash +intersection_of: part_of UBERON:0001713 ! lower eyelid +relationship: part_of UBERON:0001713 ! lower eyelid + +[Term] +id: UBERON:0019258 +name: white matter of hindbrain +def: "A white matter that is part of the hindbrain." [OBOL:automatic] +xref: DHBA:10668 +xref: FMA:268636 +is_a: UBERON:0003544 ! brain white matter +intersection_of: UBERON:0002316 ! white matter +intersection_of: part_of UBERON:0002028 ! hindbrain +relationship: part_of UBERON:0002028 ! hindbrain + +[Term] +id: UBERON:0019261 +name: white matter of forebrain +def: "A white matter that is part of the forebrain." [OBOL:automatic] +xref: DHBA:10557 +xref: FMA:268634 +is_a: UBERON:0003544 ! brain white matter +intersection_of: UBERON:0002316 ! white matter +intersection_of: part_of UBERON:0001890 ! forebrain +relationship: part_of UBERON:0001890 ! forebrain + +[Term] +id: UBERON:0019262 +name: white matter of myelencephalon +def: "A white matter that is part of the myelencephalon." [OBOL:automatic] +synonym: "myelencephalic white matter" EXACT [HBA:MYWM] +xref: HBA:9298 +is_a: UBERON:0019258 ! white matter of hindbrain +intersection_of: UBERON:0002316 ! white matter +intersection_of: part_of UBERON:0005290 ! myelencephalon +relationship: part_of UBERON:0005290 ! myelencephalon + +[Term] +id: UBERON:0019263 +name: gray matter of hindbrain +synonym: "gray matter of the hindbrain" EXACT [DHBA:HGM] +xref: DHBA:10654 +xref: FMA:268630 +is_a: UBERON:0003528 ! brain gray matter +intersection_of: UBERON:0002020 ! gray matter +intersection_of: part_of UBERON:0002028 ! hindbrain +relationship: part_of UBERON:0002028 ! hindbrain + +[Term] +id: UBERON:0019264 +name: gray matter of forebrain +xref: DHBA:10157 +xref: FMA:268608 +is_a: UBERON:0003528 ! brain gray matter +intersection_of: UBERON:0002020 ! gray matter +intersection_of: part_of UBERON:0001890 ! forebrain +relationship: part_of UBERON:0001890 ! forebrain + +[Term] +id: UBERON:0019267 +name: gray matter of midbrain +xref: DHBA:10649 +xref: FMA:83913 +is_a: UBERON:0003528 ! brain gray matter +intersection_of: UBERON:0002020 ! gray matter +intersection_of: part_of UBERON:0001891 ! midbrain +relationship: part_of UBERON:0001891 ! midbrain + +[Term] +id: UBERON:0019269 +name: gray matter of diencephalon +xref: FMA:83912 +is_a: UBERON:0019264 ! gray matter of forebrain +intersection_of: UBERON:0002020 ! gray matter +intersection_of: part_of UBERON:0001894 ! diencephalon +relationship: part_of UBERON:0001894 ! diencephalon + +[Term] +id: UBERON:0019272 +name: mesomere 1 +synonym: "mesomere M1" EXACT [EHDAA2:0004353] +xref: DHBA:12316 +xref: DMBA:16650 +xref: EHDAA2:0004353 +is_a: UBERON:0014776 ! midbrain neuromere + +[Term] +id: UBERON:0019274 +name: mesomere 2 +synonym: "mesomere 2 (preisthmus or caudal midbrain)" EXACT [DMBA:m2] +synonym: "mesomere M2" EXACT [EHDAA2:0004354] +xref: DHBA:12317 +xref: DMBA:16751 +xref: EHDAA2:0004354 +is_a: UBERON:0014776 ! midbrain neuromere + +[Term] +id: UBERON:0019275 +name: uncinate fasciculus of the forebrain +def: "A fiber pathway in the cerebral white matter that connects anterior portions of the temporal lobe with the inferior frontal gyrus and the middle frontal gyrus. It is not readily distinguished in myelin-stained cross-sections (adapted from Brain Info)." [NLX:98733] +synonym: "uncinate fasciculus of cerebral hemisphere" RELATED [NeuroNames:1444] +xref: HBA:9284 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1444 +xref: NLX:98733 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon + +[Term] +id: UBERON:0019278 +name: inferior rostral gyrus +xref: BIRNLEX:1447 +xref: DHBA:12130 +xref: HBA:4900 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0019280 {source="DHBA"} ! rostral gyrus + +[Term] +id: UBERON:0019279 +name: superior rostral gyrus +synonym: "superior rostral gyrus" EXACT [BIRNLEX:1311] +xref: BIRNLEX:1311 +xref: DHBA:12129 +xref: HBA:4897 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0019280 {source="DHBA"} ! rostral gyrus + +[Term] +id: UBERON:0019280 +name: rostral gyrus +xref: DHBA:146034876 +is_a: UBERON:0000200 ! gyrus +relationship: part_of UBERON:0016525 {source="DHBA"} ! frontal lobe + +[Term] +id: UBERON:0019283 +name: lateral longitudinal stria +synonym: "lateral white stria of lancisi" EXACT [FMA:62439] +xref: DHBA:12064 +xref: FMA:62439 +xref: HBA:265505146 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=174 +is_a: UBERON:0016536 ! white matter of limbic lobe +is_a: UBERON:0016555 {source="FMA"} ! stria of telencephalon +disjoint_from: UBERON:0022234 {source="lexical"} ! medial longitudinal stria +relationship: part_of UBERON:0002665 {source="FMA"} ! supracallosal gyrus + +[Term] +id: UBERON:0019284 +name: rhombomere 9 +synonym: "r9" EXACT ABBREVIATION [DMBA:r9] +xref: DMBA:17476 +is_a: UBERON:0001892 ! rhombomere + +[Term] +id: UBERON:0019285 +name: rhombomere 10 +synonym: "r10" EXACT ABBREVIATION [DMBA:r10] +xref: DMBA:17538 +is_a: UBERON:0001892 ! rhombomere + +[Term] +id: UBERON:0019286 +name: rhombomere 11 +synonym: "r11" EXACT ABBREVIATION [DMBA:r11] +xref: DMBA:17596 +is_a: UBERON:0001892 ! rhombomere + +[Term] +id: UBERON:0019289 +name: accessory olfactory bulb external plexiform layer +synonym: "AOB, outer plexiform layer" EXACT [DMBA:AOPl] +xref: DMBA:15965 +xref: EMAPA:35107 +xref: MA:0002932 +is_a: UBERON:0004001 ! olfactory bulb layer +relationship: part_of UBERON:0004069 {source="MA"} ! accessory olfactory bulb + +[Term] +id: UBERON:0019290 +name: accessory olfactory bulb internal plexiform layer +synonym: "AOB, internal plexiform layer" EXACT [DMBA:AIPl] +xref: DMBA:15962 +xref: EMAPA:35110 +xref: MA:0002934 +is_a: UBERON:0004001 ! olfactory bulb layer +relationship: part_of UBERON:0004069 {source="MA"} ! accessory olfactory bulb + +[Term] +id: UBERON:0019291 +name: white matter of metencephalon +xref: FMA:83939 +xref: HBA:9287 +is_a: UBERON:0019258 ! white matter of hindbrain +intersection_of: UBERON:0002316 ! white matter +intersection_of: part_of UBERON:0001895 ! metencephalon +relationship: part_of UBERON:0001895 ! metencephalon + +[Term] +id: UBERON:0019292 +name: white matter of pons +xref: FMA:83940 +is_a: UBERON:0014891 ! brainstem white matter +is_a: UBERON:0019291 ! white matter of metencephalon +intersection_of: UBERON:0002316 ! white matter +intersection_of: part_of UBERON:0000988 ! pons +relationship: part_of UBERON:0000988 ! pons + +[Term] +id: UBERON:0019293 +name: white matter of pontine tegmentum +alt_id: UBERON:0025819 +synonym: "pontine white matter tracts" EXACT [HBA:PoWM] +synonym: "predominantly white regional part of pontine tegmentum" EXACT [BIRNLEX:1069] +synonym: "substantia alba tegmenti pontis" EXACT [FMA:TA] +synonym: "white matter of pontile tegmentum" EXACT [FMA:83942] +synonym: "white substance of pontile tegmentum" EXACT [FMA:83942] +xref: BIRNLEX:1069 +xref: FMA:83942 +xref: HBA:265505486 +is_a: UBERON:0019292 ! white matter of pons +intersection_of: UBERON:0002316 ! white matter +intersection_of: part_of UBERON:0003023 ! pontine tegmentum +relationship: part_of UBERON:0003023 ! pontine tegmentum + +[Term] +id: UBERON:0019294 +name: commissure of telencephalon +synonym: "telencephalic commissures" EXACT [HBA:TELCom] +xref: HBA:9220 +is_a: UBERON:0005970 ! brain commissure +intersection_of: UBERON:0001020 ! nervous system commissure +intersection_of: part_of UBERON:0001893 ! telencephalon +relationship: part_of UBERON:0001893 ! telencephalon + +[Term] +id: UBERON:0019295 +name: caudal intralaminar nuclear group +synonym: "caudal group of intralaminar nuclei" EXACT [HBA:ILc] +synonym: "ILc" RELATED ABBREVIATION [HBA:ILc] +synonym: "posterior group of intralaminar nuclei" EXACT [DHBA:PILN] +synonym: "posterior intralaminar nucleus of the thalamus" RELATED [NeuroNames:1762] +synonym: "posterior intralaminar thalamic nucleus" RELATED [NeuroNames:1762] +xref: DHBA:10448 +xref: HBA:12921 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1762 +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0002733 ! intralaminar nuclear group + +[Term] +id: UBERON:0019303 +name: occipital sulcus +synonym: "occipital lobe sulcus" EXACT [] +xref: HBA:9386 +xref: http://linkedlifedata.com/resource/umls/id/C1518530 +xref: http://www.snomedbrowser.com/Codes/Details/314148004 +xref: NCIT:C33196 +is_a: UBERON:0013118 ! sulcus of brain +intersection_of: UBERON:0013118 ! sulcus of brain +intersection_of: part_of UBERON:0002021 ! occipital lobe +relationship: part_of UBERON:0002021 ! occipital lobe + +[Term] +id: UBERON:0019304 +name: sensory organ epithelium +xref: EMAPA:35952 +xref: MA:0003174 +is_a: UBERON:0000483 ! epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000020 ! sense organ +relationship: part_of UBERON:0000020 ! sense organ + +[Term] +id: UBERON:0019306 +name: nose epithelium +xref: EMAPA:35958 +xref: MA:0003171 +is_a: UBERON:0010371 ! ecto-epithelium +is_a: UBERON:0019304 ! sensory organ epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000004 ! nose +relationship: part_of UBERON:0000004 ! nose + +[Term] +id: UBERON:0019307 +name: epithelium of external nose +def: "Epithelial layer that is part of the external part of the nose." [http://orcid.org/0000-0002-6601-2165] +synonym: "epithelium of skin of external nose" EXACT [FMA:63143] +xref: FMA:63143 +is_a: UBERON:0012329 {source="FMA"} ! keratinized stratified squamous epithelium +is_a: UBERON:0019306 ! nose epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0007827 ! external nose +relationship: part_of UBERON:0007827 ! external nose + +[Term] +id: UBERON:0019308 +name: septohypothalamic nucleus +def: "A group of cells located between the lateral septal nucleus and the anterior commissure in the mouse ( Paxinos-2001 ). Some authors regard it as part of the lateral septal nucleus ( Swanson-1998 )." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1175] +synonym: "SHy" RELATED ABBREVIATION [DHBA:SHy] +xref: DHBA:13033 +xref: DMBA:15761 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1175 +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0002663 {source="DHBA"} ! septal nuclear complex + +[Term] +id: UBERON:0019310 +name: glossopharyngeal nerve root +synonym: "glossopharyngeal nerve root" EXACT [BIRNLEX:1533] +xref: BIRNLEX:1533 +xref: DHBA:12887 +xref: DMBA:17747 +is_a: UBERON:0006843 ! root of cranial nerve +intersection_of: UBERON:0002211 ! nerve root +intersection_of: extends_fibers_into UBERON:0001649 ! glossopharyngeal nerve +relationship: extends_fibers_into UBERON:0001649 ! glossopharyngeal nerve +relationship: part_of UBERON:0001896 ! medulla oblongata + +[Term] +id: UBERON:0019311 +name: root of olfactory nerve +def: "The initial segment of an olfactory nerve, leaving the central nervous system." [http://orcid.org/0000-0002-6601-2165] +synonym: "olfactory nerve root" EXACT [BIRNLEX:1632] +xref: BIRNLEX:1632 +is_a: UBERON:0002211 ! nerve root +intersection_of: UBERON:0002211 ! nerve root +intersection_of: extends_fibers_into UBERON:0001579 ! olfactory nerve +relationship: extends_fibers_into UBERON:0001579 ! olfactory nerve + +[Term] +id: UBERON:0019312 +name: ventrolateral nucleus of solitary tract +synonym: "nucleus of the solitary tract, ventrolateral part" RELATED [BIRNLEX:2664] +synonym: "ventrolateral subnucleus of solitary tract" EXACT HUMAN_PREFERRED [BIRNLEX:2664] +synonym: "ventrolateral subnucleus of solitary tract, left" EXACT [HBA:SolVL] +xref: BIRNLEX:2664 +xref: DHBA:12569 +xref: FMA:229583 +xref: HBA:9664 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=747 +is_a: UBERON:0009050 {source="FMA"} ! nucleus of solitary tract + +[Term] +id: UBERON:0019314 +name: epifascicular nucleus +xref: DHBA:12649 +xref: HBA:9551 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1118 +is_a: UBERON:0009662 ! hindbrain nucleus +relationship: part_of UBERON:0005290 {source="HBA"} ! myelencephalon + +[Term] +id: UBERON:0019315 +name: meibum +def: "an oily substance that prevents evaporation of the eye's tear film" [http://www.ncbi.nlm.nih.gov/pubmed/20664693] +synonym: "tarsal gland secretion" RELATED [] +is_a: UBERON:0001866 ! sebum +intersection_of: UBERON:0001866 ! sebum +intersection_of: produced_by UBERON:0001818 ! tarsal gland +relationship: adjacent_to UBERON:0010230 ! eyeball of camera-type eye +relationship: part_of UBERON:0000019 ! camera-type eye +relationship: produced_by UBERON:0001818 ! tarsal gland +relationship: surrounds UBERON:0022287 ! tear film + +[Term] +id: UBERON:0019319 +name: exocrine gland of integumental system +def: "An exocrine gland that is part of a integumental system." [GOC:dos, http://orcid.org/0000-0002-6601-2165] +synonym: "integumental exocrine gland" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "integumental system exocrine gland" EXACT [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0002365 ! exocrine gland +is_a: UBERON:0003297 ! gland of integumental system +intersection_of: UBERON:0002365 ! exocrine gland +intersection_of: part_of UBERON:0002416 ! integumental system + +[Term] +id: UBERON:0019320 +name: precordial region +def: "A subdivision of the trunk that is comprised of the epigastrium and the anterior lower thorax." [http://orcid.org/0000-0001-9114-8737] +synonym: "precordial region" EXACT [FMA:12824] +synonym: "precordium" EXACT [FMA:12824] +xref: FMA:12824 +xref: http://www.snomedbrowser.com/Codes/Details/279231003 +is_a: UBERON:0009569 ! subdivision of trunk +relationship: part_of UBERON:0000915 ! thoracic segment of trunk + +[Term] +id: UBERON:0019324 +name: intraorbital lacrimal gland +def: "A lacrimal gland located superficially at the lateral canthus, where both the lacrimal gland and Harderian gland ducts open." [ISBN:0123813611, MGI:anna] +xref: EMAPA:36578 +xref: http://linkedlifedata.com/resource/umls/id/C1882706 +xref: MA:0003109 +xref: NCIT:C60574 +is_a: UBERON:0001817 {source="MA"} ! lacrimal gland + +[Term] +id: UBERON:0019325 +name: exorbital lacrimal gland +def: "A lacrimal gland located subcutaneously at the anteroventral base of the ear adjacent to the parotid gland." [ISBN:0123813611, MGI:anna] +synonym: "exorbital gland" RELATED [] +synonym: "exorbital lacrimal gland" EXACT [MGI:anna] +synonym: "extraorbital gland" RELATED [] +synonym: "extraorbital lacrimal gland" RELATED [] +xref: EMAPA:36577 +xref: http://linkedlifedata.com/resource/umls/id/C1882664 +xref: MA:0003110 +xref: NCIT:C60564 +is_a: UBERON:0001817 {source="MA"} ! lacrimal gland + +[Term] +id: UBERON:0019326 +name: lobe of lacrimal gland +def: "An anatomical lobe that is part of a lacrimal gland" [http://orcid.org/0000-0002-6601-2165] +synonym: "lacrimal gland zone" EXACT [FMA:59381] +synonym: "zone of lacrimal gland" EXACT [FMA:59381] +xref: FMA:59381 +is_a: UBERON:0009912 ! anatomical lobe + +[Term] +id: UBERON:0019327 +name: orbital lobe of lacrimal gland +def: "Larger of the two lacrimal gland lobes located superficially." [ISBN:0123813611] +synonym: "orbital part of lacrimal gland" EXACT [FMA:59383] +synonym: "pars orbitalis (glandula lacrimalis)" EXACT [FMA:59383] +synonym: "pars orbitalis glandulae lacrimalis" EXACT LATIN [FMA:59383, FMA:TA] +xref: FMA:59383 +xref: http://www.snomedbrowser.com/Codes/Details/280621001 +is_a: UBERON:0019326 {source="ISBN:0123813611"} ! lobe of lacrimal gland + +[Term] +id: UBERON:0019328 +name: palpebral lobe of lacrimal gland +def: "Smaller of the two lacrimal gland lobes located at the eyelid." [ISBN:0123813611] +synonym: "palpebral part of lacrimal gland" EXACT [FMA:59384] +synonym: "pars palpebralis glandulae lacrimalis" EXACT LATIN [FMA:59384, FMA:TA] +xref: FMA:59384 +xref: http://www.snomedbrowser.com/Codes/Details/280622008 +is_a: UBERON:0019326 {source="ISBN:0123813611"} ! lobe of lacrimal gland + +[Term] +id: UBERON:0020358 +name: accessory XI nerve nucleus +def: "The spinal accessory nucleus lies within the cervical spinal cord (C1-C5) in the ventral horn. The nucleus ambiguus is classically said to provide the 'cranial component' of the accessory nerve. However, the very existence of this cranial component has been recently questioned and seen as contributing exclusively to the vagus nerve. The terminology continues to be used in describing both human anatomy, and that of other animals." [http://en.wikipedia.org/wiki/Spinal_accessory_nucleus] +comment: See also: Wikipedia:Spinal_accessory_nucleus +synonym: "accessory neural nucleus" EXACT [FMA:83965] +synonym: "accessory nucleus of anterior column of spinal cord" RELATED [NeuroNames:2003] +synonym: "nucleus accessorius columnae anterioris medullae spinalis" RELATED LATIN [NeuroNames:2003] +synonym: "nucleus nervi accessorii" RELATED LATIN [NeuroNames:2003] +synonym: "nucleus of accessory nerve" RELATED [NeuroNames:2003] +synonym: "nucleus of the accessory nerve" RELATED [NeuroNames:2003] +synonym: "nucleus of the spinal accessory nerve" RELATED [NeuroNames:2003] +synonym: "spinal accessory nucleus" RELATED [http://orcid.org/0000-0002-6601-2165] +xref: EMAPA:37067 {source="MA:th"} +xref: FMA:83965 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2003 +xref: http://en.wikipedia.org/wiki/Spinal_accessory_nucleus +xref: MA:0001033 +is_a: UBERON:0000126 {source="FMA"} ! cranial nerve nucleus +is_a: UBERON:0007635 ! nucleus of medulla oblongata + +[Term] +id: UBERON:0020550 +name: auricular blood vessel +def: "A blood vessel that supplies or drains an ear." [http://orcid.org/0000-0002-6601-2165] +xref: EMAPA:37386 {source="MA:th"} +xref: MA:0001226 +is_a: UBERON:0001981 ! blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: connected_to UBERON:0001690 ! ear +relationship: connected_to UBERON:0001690 ! ear + +[Term] +id: UBERON:0022229 +name: posterior amygdaloid nucleus +synonym: "posterior amygdalar nucleus" EXACT [ABA:PA] +xref: EMAPA:35694 +xref: MA:0002928 +xref: MBA:780 +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0001876 {source="MA"} ! amygdala + +[Term] +id: UBERON:0022230 +name: retrohippocampal region +synonym: "retrohippocampal cortex" EXACT [MA:0000920] +xref: EMAPA:35745 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2729 +xref: MA:0000920 +xref: MBA:822 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002421 {source="ABA"} ! hippocampal formation + +[Term] +id: UBERON:0022232 +name: secondary visual cortex +xref: EMAPA:35758 +xref: MA:0000915 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0035014 {source="cjm"} ! functional part of brain +relationship: part_of UBERON:0000411 {source="cjm"} ! visual cortex + +[Term] +id: UBERON:0022234 +name: medial longitudinal stria +synonym: "medial longitudinal stria" RELATED [NeuroNames:175] +synonym: "medial longitudinal stria of Lancisi" RELATED [NeuroNames:175] +synonym: "medial longitudinal stria of lancisi" EXACT [FMA:67956] +synonym: "medial stripe of Lancisi" RELATED [NeuroNames:175] +synonym: "medial stripe of lancisi" EXACT [FMA:67956] +synonym: "medial white stria of Lancisi" RELATED [NeuroNames:175] +synonym: "medial white stria of lancisi" EXACT [FMA:67956] +synonym: "stria Lancisii" RELATED LATIN [NeuroNames:175] +synonym: "stria longitudinalis interna" RELATED LATIN [NeuroNames:175] +synonym: "stria longitudinalis medialis" RELATED LATIN [NeuroNames:175] +synonym: "stria of lancisi" EXACT [FMA:67956] +synonym: "taenia libera Lancisi" RELATED LATIN [NeuroNames:175] +synonym: "taenia libra" RELATED LATIN [NeuroNames:175] +xref: DHBA:12066 +xref: FMA:67956 +xref: HBA:265505202 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=175 +is_a: UBERON:0016536 ! white matter of limbic lobe +is_a: UBERON:0016555 {source="FMA"} ! stria of telencephalon +relationship: part_of UBERON:0002665 {source="FMA"} ! supracallosal gyrus + +[Term] +id: UBERON:0022235 +name: peduncle of diencephalon +synonym: "diencephalon peduncle" EXACT [FMA:62444] +xref: FMA:62444 +is_a: UBERON:0003931 ! diencephalic white matter +is_a: UBERON:0007417 ! peduncle of neuraxis +intersection_of: UBERON:0007417 ! peduncle of neuraxis +intersection_of: part_of UBERON:0001894 ! diencephalon + +[Term] +id: UBERON:0022236 +name: peduncle of thalamus +synonym: "thalamic peduncle" EXACT [] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1982 +xref: MBA:365 +is_a: UBERON:0022235 ! peduncle of diencephalon +intersection_of: UBERON:0007417 ! peduncle of neuraxis +intersection_of: part_of UBERON:0001897 ! dorsal plus ventral thalamus +relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus + +[Term] +id: UBERON:0022237 +name: anterior thalamic peduncle +synonym: "anterior peduncle" EXACT [FMA:62074] +synonym: "frontal peduncle" EXACT [FMA:62074] +synonym: "frontal thalamic peduncle" EXACT [FMA:62074] +synonym: "pedunculus rostralis thalami" EXACT LATIN [FMA:62074, FMA:TA] +synonym: "rostral peduncle of thalamus" EXACT [FMA:62074] +xref: DHBA:266441633 +xref: FMA:62074 +xref: HBA:265505274 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=369 +is_a: UBERON:0011299 ! white matter of telencephalon +is_a: UBERON:0022236 ! peduncle of thalamus +disjoint_from: UBERON:0022243 {source="lexical"} ! posterior thalamic peduncle + +[Term] +id: UBERON:0022241 +name: superior thalamic peduncle +synonym: "centroparietal peduncle" EXACT [FMA:62075] +synonym: "centroparietal thalamic peduncle" EXACT [FMA:62075] +synonym: "middle thalamic peduncle" EXACT [FMA:62075] +synonym: "pedunculus thalami superior" EXACT LATIN [FMA:62075, FMA:TA] +synonym: "superior peduncle" EXACT [FMA:62075] +xref: FMA:62075 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=370 +is_a: UBERON:0022236 ! peduncle of thalamus + +[Term] +id: UBERON:0022242 +name: inferior thalamic peduncle +synonym: "inferior peduncle" EXACT [FMA:62076] +synonym: "pedunculus inferior thalami" EXACT LATIN [FMA:62076, FMA:TA] +synonym: "pedunculus thalami caudalis" EXACT LATIN [FMA:62076, FMA:TA] +synonym: "pedunculus thalami inferior" EXACT LATIN [FMA:62076, FMA:TA] +synonym: "pedunculus thalamicus inferior" EXACT LATIN [FMA:62076, FMA:TA] +synonym: "temporal peduncle" EXACT [FMA:62076] +synonym: "temporal thalamic peduncle" EXACT [FMA:62076] +xref: DHBA:12059 +xref: FMA:62076 +xref: HBA:265505110 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=371 +is_a: UBERON:0022236 ! peduncle of thalamus + +[Term] +id: UBERON:0022243 +name: posterior thalamic peduncle +synonym: "occipital peduncle" EXACT [FMA:62077] +synonym: "occipital thalamic peduncle" EXACT [FMA:62077] +synonym: "pedunculus ventrocaudalis thalami" EXACT LATIN [FMA:62077, FMA:TA] +synonym: "posterior peduncle" EXACT [FMA:62077] +synonym: "ventrocaudal thalamic peduncle" EXACT [FMA:62077] +xref: FMA:62077 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=372 +is_a: UBERON:0022236 ! peduncle of thalamus + +[Term] +id: UBERON:0022244 +name: anterior orbital gyrus +synonym: "AOrG" RELATED ABBREVIATION [HBA:AOrG] +xref: FMA:256196 +xref: HBA:4053 +xref: http://www.snomedbrowser.com/Codes/Details/279196000 +is_a: UBERON:0007193 {source="FMA"} ! orbital gyrus + +[Term] +id: UBERON:0022246 +name: superior longitudinal fasciculus +def: "The superior longitudinal fasciculus (also called the superior longitudinal fascicle or SLF) is a pair of long bi-directional bundles of neurons connecting the front and the back of the cerebrum. Each association fiber bundle is lateral to the centrum ovale of a cerebral hemisphere and connects the frontal, occipital, parietal, and temporal lobes. The neurons pass from the frontal lobe through the operculum to the posterior end of the lateral sulcus where numerous neurons radiate into the occipital lobe and other neurons turn downward and forward around the putamen and radiate to anterior portions of the temporal lobe." [http://en.wikipedia.org/wiki/Superior_longitudinal_fasciculus] +synonym: "superior longitudinal fascicle" RELATED [http://en.wikipedia.org/wiki/Superior_longitudinal_fasciculus] +xref: DHBA:10592 +xref: FMA:77631 +xref: HBA:9281 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2080 +xref: http://en.wikipedia.org/wiki/Superior_longitudinal_fasciculus +xref: http://www.snomedbrowser.com/Codes/Details/369082006 +is_a: UBERON:0022248 ! cerebral nerve fasciculus +relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon + +[Term] +id: UBERON:0022247 +name: forebrain ipsilateral fiber tracts +synonym: "FIFT" RELATED ABBREVIATION [DHBA:FIFT] +xref: DHBA:10568 +is_a: UBERON:0005838 ! fasciculus of brain +relationship: part_of UBERON:0019261 {source="DHBA"} ! white matter of forebrain + +[Term] +id: UBERON:0022248 +name: cerebral nerve fasciculus +synonym: "cerebral fascicle" EXACT [FMA:260712] +synonym: "cerebral fasciculus" EXACT [FMA:260712] +synonym: "nerve fascicle of telencephalon" EXACT [] +synonym: "telencephalic fascicle" EXACT [] +synonym: "telencephalic nerve fascicle" EXACT [] +xref: FMA:260712 +is_a: UBERON:0005838 ! fasciculus of brain +intersection_of: UBERON:0001019 ! nerve fasciculus +intersection_of: part_of UBERON:0001893 ! telencephalon +relationship: part_of UBERON:0001893 ! telencephalon + +[Term] +id: UBERON:0022250 +name: subcallosal fasciculus +synonym: "fasciculus occipitofrontalis superior" EXACT LATIN [FMA:77634, FMA:TA] +synonym: "fasciculus subcallosus" EXACT LATIN [FMA:77637, FMA:TA] +synonym: "subcallosal bundle" RELATED [NeuroNames:2141] +synonym: "superior fronto-occipital bundle" RELATED [NeuroNames:2141] +synonym: "superior fronto-occipital fasciculus" RELATED [NeuroNames:2141] +synonym: "superior occipito-frontal fascicle" RELATED [NeuroNames:2141] +synonym: "superior occipitofrontal fasciculus" EXACT [DHBA:12071] +synonym: "superior occipitofrontal fasciculus" RELATED [NeuroNames:2141] +xref: DHBA:12071 +xref: FMA:77634 +xref: FMA:77637 +xref: HBA:265505338 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2141 +xref: http://www.snomedbrowser.com/Codes/Details/369086009 +is_a: UBERON:0034754 ! occipitofrontal fasciculus +relationship: dubious_for_taxon NCBITaxon:9606 {source="WP"} + +[Term] +id: UBERON:0022252 +name: precentral sulcus +def: "The precentral sulcus lies parallel to, and in front of, the central sulcus. (A sulcus is one of the prominent grooves on the surface of the human brain. ) The precentral sulcus divides the inferior, middle, and superior frontal gyri from the precentral gyrus. In the majority of brains, the precentral sulcus is divided into two parts: the inferior precentral sulcus and the superior precentral sulcus. However, the precentral sulcus may also be divided into three parts or form one continuous sulcus." [http://en.wikipedia.org/wiki/Precentral_sulcus] +xref: DHBA:10628 +xref: FMA:83800 +xref: HBA:9355 +xref: http://www.snomedbrowser.com/Codes/Details/279341002 +xref: NCIT:C33394 +xref: Precentral:sulcus +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus +is_a: UBERON:0014639 ! frontal sulcus + +[Term] +id: UBERON:0022254 +name: ventral thalamic fasciculus +def: "The thalamic fasciculus is a component of the subthalamus. It is sometimes considered synonymous with 'field H1 of Forel'. Nerve fibres forming a composite bundle containing cerebellothalamic (crossed) and pallidothalamic (uncrossed) fibres that is insinuated between the thalamus and zona incerta. The thalamic fasciculus consists of the joint fibers of the ansa lenticularis and the lenticular fasciculus, coming from different portions of the medial globus pallidus, before they jointly enter the ventral lateral nucleus of the thalamus." [http://en.wikipedia.org/wiki/Thalamic_fasciculus] +synonym: "area subthalamica tegmentalis, pars dorsomedialis" EXACT LATIN [FMA:62065, FMA:TA] +synonym: "area tegmentalis H1" EXACT LATIN [FMA:62065, FMA:TA] +synonym: "area tegmentalis, pars dorsalis" EXACT LATIN [FMA:62065, FMA:TA] +synonym: "area tegmentalis, pars dorsalis (Forel)" EXACT LATIN [FMA:62065, FMA:TA] +synonym: "campus foreli (pars dorsalis)" EXACT LATIN [FMA:62065, FMA:TA] +synonym: "fasciculus thalamicus" EXACT [FMA:TA] +synonym: "fasciculus thalamicus [h1]" EXACT [FMA:TA] +synonym: "fasciculus thalamicus hypothalami" EXACT LATIN [FMA:62065, FMA:TA] +synonym: "field H1" EXACT [FMA:62065] +synonym: "forel's field h1" EXACT [FMA:62065] +synonym: "forelli campus I" EXACT LATIN [FMA:62065, FMA:TA] +synonym: "h1 bundle of Forel" EXACT LATIN [FMA:62065, FMA:TA] +synonym: "h1 field of Forel" EXACT LATIN [FMA:62065, FMA:TA] +synonym: "tegmental area h1" EXACT [FMA:62065] +synonym: "thalamic fasciculus" EXACT [FMA:62065] +synonym: "thalamic fasciculus [h1]" EXACT [FMA:62065] +xref: DHBA:10593 +xref: FMA:62065 +xref: HBA:265505374 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=439 +xref: http://www.snomedbrowser.com/Codes/Details/369185006 +xref: Thalamic:fasciculus +is_a: UBERON:0005838 ! fasciculus of brain +intersection_of: UBERON:0005838 ! fasciculus of brain +intersection_of: part_of UBERON:0001900 ! ventral thalamus +relationship: part_of UBERON:0001900 ! ventral thalamus +relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts + +[Term] +id: UBERON:0022256 +name: subthalamic fasciculus +def: "The subthalamic fasciculus is a tract which connects the subthalamic nucleus and the globus pallidus. It is a bidirectional connection between the GP and the subthalamic nucleus, including (1) fibers running from the GPe to the subthalamic nucleus, and (2) fibers running from the STN back to the GP." [http://en.wikipedia.org/wiki/Subthalamic_fasciculus] +synonym: "fasciculus subthalamicus" RELATED LATIN [NeuroNames:2280] +synonym: "subthalamic fascicle" RELATED [NeuroNames:2280] +synonym: "subthalamic fasciculus" RELATED [NeuroNames:2280] +xref: DHBA:12089 +xref: FMA:77525 +xref: HBA:265505350 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2280 +xref: http://www.snomedbrowser.com/Codes/Details/369187003 +xref: MBA:317 +xref: Subthalamic:fasciculus +is_a: UBERON:0005838 ! fasciculus of brain +relationship: connects UBERON:0001875 ! globus pallidus +relationship: connects UBERON:0001906 ! subthalamic nucleus +relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts + +[Term] +id: UBERON:0022258 +name: endolemniscal nucleus +synonym: "EL" RELATED ABBREVIATION [HBA:EL] +xref: DHBA:12648 +xref: FMA:77099 +xref: HBA:9548 +is_a: UBERON:0009662 ! hindbrain nucleus +relationship: part_of UBERON:0005290 {source="HBA"} ! myelencephalon + +[Term] +id: UBERON:0022259 +name: white matter radiation +synonym: "neuraxis radiation" EXACT [FMA:83859] +synonym: "radiation of neuraxis" EXACT [FMA:83859] +xref: FMA:83859 +is_a: UBERON:0002316 ! white matter + +[Term] +id: UBERON:0022260 +name: radiation of cerebral hemisphere +synonym: "cerebral hemisphere radiation" EXACT [FMA:61940] +xref: FMA:61940 +is_a: UBERON:0002437 ! cerebral hemisphere white matter +is_a: UBERON:0022259 ! white matter radiation +intersection_of: UBERON:0022259 ! white matter radiation +intersection_of: part_of UBERON:0001869 ! cerebral hemisphere + +[Term] +id: UBERON:0022262 +name: auditory radiation +def: "The acoustic radiations or auditory radiations are structures found in the brain, in the ventral cochlear pathway, a part of the auditory system. Lesions to the auditory radiations could be a cause of cortical deafness." [http://en.wikipedia.org/wiki/Acoustic_radiation] +synonym: "acoustic radiation" EXACT [FMA:62413] +synonym: "auditory radiation" RELATED [http://en.wikipedia.org/wiki/Acoustic_radiation] +synonym: "auditory radiations" RELATED [http://en.wikipedia.org/wiki/Acoustic_radiation] +synonym: "geniculotemporal radiation" EXACT [FMA:62413] +synonym: "geniculotemporal tract" EXACT [FMA:62413] +synonym: "radiatio acustica" EXACT LATIN [FMA:TA] +xref: Acoustic:radiation +xref: DHBA:266441583 +xref: FMA:62413 +xref: HBA:265504974 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2084 +is_a: UBERON:0022260 {source="FMA"} ! radiation of cerebral hemisphere +relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts + +[Term] +id: UBERON:0022264 +name: optic radiation +def: "The optic radiation (also known as the geniculo-calcarine tract or as the geniculostriate pathway) is a collection of axons from relay neurons in the lateral geniculate nucleus of the thalamus carrying visual information to the visual cortex (also called striate cortex) along the calcarine fissure. There is one such tract on each side of the brain." [http://en.wikipedia.org/wiki/Optic_radiation] +synonym: "archambault%27s loop" RELATED [http://en.wikipedia.org/wiki/Optic_radiation] +synonym: "genicula-celcarine tract" RELATED [http://en.wikipedia.org/wiki/Optic_radiation] +synonym: "geniculo-calcarine tract" RELATED [http://en.wikipedia.org/wiki/Optic_radiation] +synonym: "geniculocalcarine tract" RELATED [http://en.wikipedia.org/wiki/Optic_radiation] +synonym: "geniculostriate pathway" RELATED [http://en.wikipedia.org/wiki/Optic_radiation] +synonym: "Gratiolet's radiation" EXACT [FMA:61941] +synonym: "meyer's loop" RELATED [http://en.wikipedia.org/wiki/Optic_radiation] +synonym: "optic radiations" RELATED [http://en.wikipedia.org/wiki/Optic_radiation] +synonym: "radiatio optica" RELATED [http://en.wikipedia.org/wiki/Optic_radiation] +synonym: "railroad nystagmus" RELATED [http://en.wikipedia.org/wiki/Optic_radiation] +xref: DHBA:266441621 +xref: FMA:61941 +xref: HBA:9311 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1440 +xref: http://www.snomedbrowser.com/Codes/Details/280953008 +xref: Optic:radiation +is_a: UBERON:0022260 {source="FMA"} ! radiation of cerebral hemisphere +relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts + +[Term] +id: UBERON:0022268 +name: planum temporale +def: "The planum temporale is the cortical area just posterior to the auditory cortex within the Sylvian fissure. It is a triangular region which forms the heart of Wernicke's area, one of the most important functional areas for language. The planum temporale shows a significant asymmetry. In 65% of all individuals the left planum temporale appears to be more developed, while the right planum temporale is more developed in only 10%. In some peoplebs brains, the planum temporale is more than five times larger on the left than on the right, making it the most asymmetrical structure in the brain. This greater size of the left planum temporale compared with the right is already present in the foetus, where it can be observed starting from the 31st week of gestation. This observation strengthens the hypothesis of a genetic predisposition for brain asymmetry." [http://en.wikipedia.org/wiki/Planum_temporale, http://neuro.imm.dtu.dk/wiki/Planum_temporale] +synonym: "PLT" RELATED ABBREVIATION [HBA:PLT] +xref: DHBA:12145 +xref: HBA:4171 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2333 +xref: Planum:temporale +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001871 {source="HBA"} ! temporal lobe +relationship: source_atlas Harvard-Oxford:Atlas + +[Term] +id: UBERON:0022271 +name: corticopontine fibers +def: "Corticopontine fibers, commonly referred to as corticobulbar fibers, are projections from the cerebral cortex to the pontine nuclei. Depending upon the lobe of origin, they can be classified as frontopontine fibers, parietopontine fibers, temporopontine fibers and occipitopontine fibers. They are motor fibers that stretch from the precentral gyrus (motor strip) to the nuclei of cranial nerves V (trigenimal), VII (facial) and XII (hypoglossal). These fibers run alongside the corticospinal fibers." [http://en.wikipedia.org/wiki/Corticopontine_fibers] +synonym: "cortico-pontine fibers" EXACT [HBA:cpn] +synonym: "cortico-pontine fibers, pontine part" EXACT [DHBA:cpn] +synonym: "corticopontine" RELATED [http://en.wikipedia.org/wiki/Corticopontine_fibers] +synonym: "corticopontine fibers" EXACT [FMA:75190] +synonym: "corticopontine fibers of pons" EXACT [] +synonym: "corticopontine fibers set" EXACT [FMA:75190] +synonym: "corticopontine fibres" EXACT [FMA:75190] +synonym: "corticopontine fibres" RELATED [http://en.wikipedia.org/wiki/Corticopontine_fibers] +synonym: "fibrae corticopontinae" EXACT [FMA:TA] +synonym: "tractus corticopontinus" EXACT LATIN [FMA:TA] +xref: Corticopontine:fibers +xref: DHBA:266441721 +xref: FMA:75190 +xref: HBA:265505490 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1322 +xref: http://www.snomedbrowser.com/Codes/Details/91366009 +is_a: UBERON:0000122 ! neuron projection bundle +is_a: UBERON:0011215 ! central nervous system cell part cluster +relationship: part_of UBERON:0019293 {source="HBA"} ! white matter of pontine tegmentum + +[Term] +id: UBERON:0022272 +name: corticobulbar tract +def: "The corticobulbar (or corticonuclear) tract is a white matter pathway connecting the cerebral cortex to the brainstem. The term \"bulbar\" refers to the brainstem, as \"bulb\" was a historical term meaning the area currently called the brainstem. The 'bulb' is an archaic term for the medulla oblongata. In clinical usage, it includes the pons as well." [http://en.wikipedia.org/wiki/Corticobulbar_tract] +synonym: "bulbar" RELATED [http://en.wikipedia.org/wiki/Corticobulbar_tract] +synonym: "cbu-h" RELATED ABBREVIATION [DHBA:cbu-h] +synonym: "cortico-bulbar tract" RELATED [http://en.wikipedia.org/wiki/Corticobulbar_tract] +synonym: "corticobulbar" RELATED [http://en.wikipedia.org/wiki/Corticobulbar_tract] +synonym: "corticobulbar axons" RELATED [http://en.wikipedia.org/wiki/Corticobulbar_tract] +synonym: "corticobulbar fiber" RELATED [http://en.wikipedia.org/wiki/Corticobulbar_tract] +synonym: "corticobulbar fibre" RELATED [http://en.wikipedia.org/wiki/Corticobulbar_tract] +synonym: "corticobulbar pathway" RELATED [http://en.wikipedia.org/wiki/Corticobulbar_tract] +synonym: "corticonuclear tract" RELATED [http://en.wikipedia.org/wiki/Corticobulbar_tract] +xref: Corticobulbar:tract +xref: DHBA:12774 +xref: FMA:275544 +xref: HBA:265505058 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1319 +xref: MBA:994 +is_a: UBERON:0007702 ! tract of brain +relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon +relationship: part_of UBERON:0036224 ! corticobulbar and corticospinal tracts + +[Term] +id: UBERON:0022273 +name: lacrimal lake +def: "A small cistern-like area of the conjunctiva at the medial angle of the eye, in which the tears collect after bathing the front surface of the eyeball and the conjunctival sac." [MGI:anna] +synonym: "lacrymal lake" EXACT [MGI:anna] +synonym: "lacus lacrimalis" EXACT LATIN [] +xref: FMA:59402 +xref: http://www.snomedbrowser.com/Codes/Details/368792002 +xref: Lacrimal:lake +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001811 ! conjunctiva + +[Term] +id: UBERON:0022274 +name: lacrimal papilla +def: "A small conical elevation at the basal angle of the lacrimal lake." [http://en.wikipedia.org/wiki/Lacrimal_papilla] +synonym: "papilla lacrimalis" EXACT LATIN [http://en.wikipedia.org/wiki/Lacrimal_papilla] +xref: FMA:59407 +xref: http://www.snomedbrowser.com/Codes/Details/362533003 +xref: Lacrimal:papilla +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001850 ! lacrimal drainage system + +[Term] +id: UBERON:0022275 +name: colic flexure +def: "A sharp bend between consecutive segments of the colon." [http://orcid.org/0000-0002-6601-2165] +synonym: "flexura coli" EXACT [FMA:14555] +xref: FMA:14555 +xref: http://www.snomedbrowser.com/Codes/Details/245426004 +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0001155 ! colon + +[Term] +id: UBERON:0022276 +name: splenic flexure of colon +def: "The splenic (or left colic) flexure is a sharp bend between the transverse and the descending colon in the left upper quadrant of humans. The left colic flexure is near the spleen, and hence called the splenic flexure. There are two colic flexures in the transverse colon — the other being the hepatic flexure in the right upper quadrant." [http://en.wikipedia.org/wiki/Splenic_flexure] +synonym: "flexura coli splenica" EXACT LATIN [FMA:TA] +synonym: "left colic flexure" EXACT [FMA:14551] +synonym: "left colic flexure" RELATED [http://en.wikipedia.org/wiki/Splenic_flexure] +synonym: "splenic flexure" EXACT [FMA:14551] +synonym: "splenic flexure of colon" EXACT [FMA:14551] +xref: FMA:14551 +xref: http://linkedlifedata.com/resource/umls/id/C0227387 +xref: http://www.snomedbrowser.com/Codes/Details/245428003 +xref: NCIT:C12267 +xref: Splenic:flexure +is_a: UBERON:0022275 ! colic flexure +relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut + +[Term] +id: UBERON:0022277 +name: hepatic flexure of colon +def: "Hepatic (or the right colic) flexure is the sharp bend between the ascending and the transverse colon. The right colic flexure is adjacent to the liver, and is therefore also known as the hepatic flexure. Thus, the left colic flexure is also known as the splenic flexure (as it is close to the spleen). The hepatic flexure lies in the right upper quadrant of the abdomen in humans." [http://en.wikipedia.org/wiki/Hepatic_flexure] +synonym: "flexura coli heaptica" EXACT LATIN [FMA:TA] +synonym: "hepatic flexure" EXACT [FMA:14550] +synonym: "hepatic flexure of colon" EXACT [FMA:14550] +synonym: "right colic flexure" EXACT [FMA:14550] +synonym: "right colic flexure" RELATED [http://en.wikipedia.org/wiki/Hepatic_flexure] +xref: FMA:14550 +xref: Hepatic:flexure +xref: http://linkedlifedata.com/resource/umls/id/C0227385 +xref: http://www.snomedbrowser.com/Codes/Details/245427008 +xref: NCIT:C12266 +is_a: UBERON:0022275 ! colic flexure +relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut + +[Term] +id: UBERON:0022278 +name: nucleus of pudendal nerve +def: "A nucleus in the ventral part of the anterior horn of the sacral region of the spinal cord that is the origin of the pudendal nerve." [http://en.wikipedia.org/wiki/Onuf%27s_nucleus, http://en.wikipedia.org/wiki/Pudendal_nerve#Nucleus] +synonym: "nucleus of Onuf" EXACT [FMA:257031] +synonym: "Onuf's nucleus" EXACT [FMA:77024] +synonym: "pudendal neural nucleus" EXACT [FMA:77024] +xref: FMA:257031 +xref: FMA:77024 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2701 +xref: Onuf%27s:nucleus +is_a: UBERON:0011777 ! nucleus of spinal cord +intersection_of: UBERON:0000125 ! neural nucleus +intersection_of: extends_fibers_into UBERON:0011390 ! pudendal nerve +relationship: extends_fibers_into UBERON:0011390 ! pudendal nerve +relationship: part_of UBERON:0002257 ! ventral horn of spinal cord +relationship: part_of UBERON:0005853 ! sacral spinal cord ventral column + +[Term] +id: UBERON:0022279 +name: strand of hair on external ear +synonym: "hair of external ear" EXACT [FMA:53671] +synonym: "hair of tragus" EXACT [FMA:53671] +synonym: "tragus hair" EXACT [FMA:53671] +xref: FMA:53671 +is_a: UBERON:0016446 ! hair of head +intersection_of: UBERON:0001037 ! strand of hair +intersection_of: part_of UBERON:0001691 ! external ear +relationship: part_of UBERON:0001691 ! external ear + +[Term] +id: UBERON:0022280 +name: epithelium of crypt of Lieberkuhn of small intestine +synonym: "epithelium of small intestinal crypt of Lieberkuhn" EXACT [FMA:63243] +synonym: "wall of small intestinal crypt of Lieberkuhn" RELATED [FMA:63243] +xref: FMA:63243 +is_a: UBERON:0001902 ! epithelium of small intestine +is_a: UBERON:0011184 ! epithelium of crypt of Lieberkuhn +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001241 ! crypt of Lieberkuhn of small intestine +relationship: part_of UBERON:0001241 ! crypt of Lieberkuhn of small intestine + +[Term] +id: UBERON:0022281 +name: epithelium of crypt of Lieberkuhn of large intestine +xref: FMA:63628 +is_a: UBERON:0001278 ! epithelium of large intestine +is_a: UBERON:0011184 ! epithelium of crypt of Lieberkuhn +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001984 ! crypt of Lieberkuhn of large intestine +relationship: part_of UBERON:0001984 ! crypt of Lieberkuhn of large intestine + +[Term] +id: UBERON:0022282 +name: secretion of Harderian gland +def: "A merocrine secretion that is produced by a Harderian gland, containing lipids" [https://doi.org/10.1007/978-3-642-76685-5_2] +synonym: "Harderian gland fluid" EXACT [] +synonym: "Harderian gland secretion" EXACT [] +is_a: UBERON:0000456 ! secretion of exocrine gland +relationship: produced_by UBERON:0004187 ! Harderian gland + +[Term] +id: UBERON:0022283 +name: pineal recess of third ventricle +def: "The diverticulum of the thin roof of the dorsocaudal third ventricle that projects into the stalk of the pineal gland." [ISBN:068340007X] +synonym: "pineal recess" EXACT [FMA:78458] +synonym: "pineal recess of 3V" EXACT [DHBA:266441661] +synonym: "recessus epiphysis" RELATED LATIN [NeuroNames:456] +synonym: "recessus pinealis" EXACT LATIN [FMA:TA] +xref: DHBA:266441661 +xref: EMAPA:18542 +xref: FMA:78458 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=456 +xref: http://www.snomedbrowser.com/Codes/Details/280070003 +xref: http://www.snomedbrowser.com/Codes/Details/369281005 +xref: Pineal:recess +is_a: UBERON:0002553 ! anatomical cavity +relationship: part_of UBERON:0002286 ! third ventricle + +[Term] +id: UBERON:0022284 +name: lacrimal gland bud +def: "the single bud-like invagination of the conjunctival fornix epithelium at the temporal aspect of the eye that signals lacrimal gland formation (Int Rev Cytol. 1996;168:1-80. Cell biology of the harderian gland)" [MGI:anna] +xref: EMAPA:35464 +is_a: UBERON:0005153 ! epithelial bud +is_a: UBERON:0015808 ! eye epithelium +relationship: part_of UBERON:0001750 ! lacrimal apparatus + +[Term] +id: UBERON:0022285 +name: strand of tylotrich hair +def: "a single large hair, surrounded by neurovascular tissue at the level of the sebaceous gland, with a hair follicle innervated by a hair-tylotrich neuron (CL:1001436), a rapidly acting mechanoreceptor." [CL:1001436, MP:0000977] +xref: CL:1001436 +is_a: UBERON:0001037 ! strand of hair + +[Term] +id: UBERON:0022286 +name: secretion of nictitans gland +def: "A secretion that is produced by a nictitans gland, containing glycoprotein" [https://doi.org/10.1007/978-3-642-76685-5_2] +synonym: "nictitans gland fluid" EXACT [] +synonym: "nictitans gland secretion" EXACT [] +is_a: UBERON:0000456 ! secretion of exocrine gland +relationship: produced_by UBERON:0013230 ! nictitans gland + +[Term] +id: UBERON:0022287 +name: tear film +def: "An aqueous substance that covers the anterior surface of the eyeball, keeping the cornea wet." [http://orcid.org/0000-0002-6601-2165] +synonym: "precorneal film" EXACT [MGI:anna] +is_a: UBERON:0000456 ! secretion of exocrine gland +is_a: UBERON:0006314 ! bodily fluid +relationship: composed_primarily_of UBERON:0001827 {notes="primarily aqueous layer"} ! secretion of lacrimal gland +relationship: part_of UBERON:0001801 ! anterior segment of eyeball +relationship: part_of UBERON:0010409 ! ocular surface region +relationship: protects UBERON:0010409 ! ocular surface region + +[Term] +id: UBERON:0022288 +name: surface of eyeball +synonym: "surface of region of wall of eyeball" RELATED [FMA:58315] +xref: FMA:58315 +is_a: UBERON:0036215 ! anatomical surface region +intersection_of: UBERON:0036215 ! anatomical surface region +intersection_of: bounding_layer_of UBERON:0010230 ! eyeball of camera-type eye +relationship: bounding_layer_of UBERON:0010230 ! eyeball of camera-type eye +relationship: part_of UBERON:0010230 ! eyeball of camera-type eye + +[Term] +id: UBERON:0022292 +name: splenic arteriole +xref: http://www.snomedbrowser.com/Codes/Details/282511007 +xref: NCIT:C33596 +is_a: UBERON:0001980 ! arteriole +is_a: UBERON:0003497 ! abdomen blood vessel +intersection_of: UBERON:0001980 ! arteriole +intersection_of: part_of UBERON:0002106 ! spleen +relationship: part_of UBERON:0002106 ! spleen + +[Term] +id: UBERON:0022293 +name: reproductive gland secretion +def: "A portion of organism substance that is secreted by a reproductive gland." [UBERON:cjm] +synonym: "genital fluid" RELATED [] +synonym: "genital secretion" RELATED [] +synonym: "reproductive system fluid" RELATED [] +synonym: "reproductive system fluid/secretion" RELATED [] +synonym: "reproductive system secretion" RELATED [] +is_a: UBERON:0000463 ! organism substance +intersection_of: UBERON:0000463 ! organism substance +intersection_of: produced_by UBERON:0003937 ! reproductive gland +relationship: produced_by UBERON:0003937 ! reproductive gland + +[Term] +id: UBERON:0022294 +name: morphological boundary +def: "A two dimensional anatomical structure that corresponds to some structural discontinuity." [CARO:0001007] +xref: CARO:0001007 +is_a: UBERON:0010199 {source="CARO"} ! bona-fide anatomical boundary + +[Term] +id: UBERON:0022295 +name: integumental surface +def: "The outer surface of an organism or its integumental system." [CARO:DOS] +is_a: UBERON:0022294 ! morphological boundary +relationship: adjacent_to UBERON:0002416 ! integumental system +relationship: adjacent_to UBERON:0013514 ! space surrounding organism + +[Term] +id: UBERON:0022296 +name: inferior palpebral branch of infra-orbital nerve +def: "A nerve that innervates a lower eyelid and is a branch of the infra-orbital branch of the maxillary nerve." [http://orcid.org/0000-0002-6601-2165] +synonym: "rami palpebrales inferiores nervi infraorbitalis" EXACT LATIN [http://en.wikipedia.org/wiki/Inferior_palpebral_nerve] +xref: FMA:52983 +xref: http://en.wikipedia.org/wiki/Inferior_palpebral_nerve +is_a: UBERON:0022297 ! palpebral branch of infra-orbital nerve +is_a: UBERON:0022298 ! lower eyelid nerve +intersection_of: UBERON:0001021 {source="FMA"} ! nerve +intersection_of: branching_part_of UBERON:0018408 {source="FMA"} ! infra-orbital nerve +intersection_of: innervates UBERON:0001713 {source="FMA"} ! lower eyelid + +[Term] +id: UBERON:0022297 +name: palpebral branch of infra-orbital nerve +def: "A nerve that innervates an eyelid and is a branch of the infra-orbital branch of the maxillary nerve." [http://orcid.org/0000-0002-6601-2165] +synonym: "palpebral branch of maxillary nerve" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/280236007 +is_a: UBERON:0003437 ! eyelid nerve +is_a: UBERON:0011779 ! nerve of head region +intersection_of: UBERON:0001021 {source="FMA"} ! nerve +intersection_of: branching_part_of UBERON:0018408 {source="FMA"} ! infra-orbital nerve +intersection_of: innervates UBERON:0001711 {source="FMA"} ! eyelid +relationship: branching_part_of UBERON:0018408 ! infra-orbital nerve +relationship: part_of UBERON:0018408 ! infra-orbital nerve + +[Term] +id: UBERON:0022298 +name: lower eyelid nerve +def: "A nerve that innervates a lower eyelid." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0003437 ! eyelid nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: innervates UBERON:0001713 ! lower eyelid +relationship: innervates UBERON:0001713 ! lower eyelid + +[Term] +id: UBERON:0022299 +name: upper eyelid nerve +def: "A nerve that innervates an upper eyelid." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0003437 ! eyelid nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: innervates UBERON:0001712 ! upper eyelid +relationship: innervates UBERON:0001712 ! upper eyelid + +[Term] +id: UBERON:0022300 +name: nasociliary nerve +def: "A branch of the ophthalmic nerve that serves to supply the mucous membrane of the nose, the tip of the nose, and the conjunctiva." [http://medical-dictionary.thefreedictionary.com/nasociliary+nerve] +synonym: "nasal nerve" EXACT [BTO:0001452] +synonym: "nasociliary" RELATED [http://en.wikipedia.org/wiki/Nasociliary_nerve] +synonym: "nasociliary nerve" RELATED [BTO:0001452] +synonym: "nervus nasociliaris" RELATED [BTO:0001452] +xref: BTO:0001452 +xref: FMA:52668 +xref: http://www.snomedbrowser.com/Codes/Details/280220005 +xref: Nasociliary:nerve +xref: NCIT:C33159 +is_a: UBERON:0011779 ! nerve of head region +relationship: branching_part_of UBERON:0000348 {source="BTO"} ! ophthalmic nerve +relationship: branching_part_of UBERON:0000942 {source="FMA"} ! frontal nerve (branch of ophthalmic) +relationship: part_of UBERON:0000942 ! frontal nerve (branch of ophthalmic) + +[Term] +id: UBERON:0022301 +name: long ciliary nerve +def: "A branch of the nasociliary nerve that innervates the ciliary muscles, the iris, and the cornea." [http://medical-dictionary.thefreedictionary.com/long+ciliary+nerve, UBERON:cjm] +synonym: "long ciliary nerve" RELATED [http://en.wikipedia.org/wiki/Long_ciliary_nerves] +synonym: "nervi ciliares longi" RELATED LATIN [http://en.wikipedia.org/wiki/Long_ciliary_nerves] +xref: FMA:52691 +xref: http://en.wikipedia.org/wiki/Long_ciliary_nerves +xref: http://www.snomedbrowser.com/Codes/Details/280228003 +is_a: UBERON:0003438 ! iris nerve +is_a: UBERON:0011779 ! nerve of head region +intersection_of: UBERON:0001021 ! nerve +intersection_of: branching_part_of UBERON:0022300 ! nasociliary nerve +intersection_of: innervates UBERON:0000964 ! cornea +intersection_of: innervates UBERON:0001605 ! ciliary muscle +intersection_of: innervates UBERON:0001769 ! iris +relationship: branching_part_of UBERON:0022300 ! nasociliary nerve +relationship: innervates UBERON:0000964 ! cornea +relationship: innervates UBERON:0001605 ! ciliary muscle +relationship: part_of UBERON:0022300 ! nasociliary nerve + +[Term] +id: UBERON:0022302 +name: short ciliary nerve +def: "A branch of the ciliary ganglion that innervates the ciliary muscles, the iris, and the tunics of the eyeball." [http://medical-dictionary.thefreedictionary.com/long+ciliary+nerve, UBERON:cjm] +synonym: "lower branch of ciliary ganglion" EXACT [FMA:7041] +synonym: "nervi ciliares breves" RELATED LATIN [http://en.wikipedia.org/wiki/Short_ciliary_nerves] +synonym: "nervi ciliares brevis" RELATED LATIN [] +synonym: "short ciliary nerve" RELATED [http://en.wikipedia.org/wiki/Short_ciliary_nerves] +xref: FMA:7041 +xref: http://en.wikipedia.org/wiki/Short_ciliary_nerves +xref: http://www.snomedbrowser.com/Codes/Details/417598000 +is_a: UBERON:0003438 ! iris nerve +is_a: UBERON:0004293 ! parasympathetic nerve +is_a: UBERON:0011779 ! nerve of head region +intersection_of: UBERON:0001021 ! nerve +intersection_of: branching_part_of UBERON:0002058 ! main ciliary ganglion +intersection_of: innervates UBERON:0001605 ! ciliary muscle +intersection_of: innervates UBERON:0001769 ! iris +intersection_of: innervates UBERON:0012430 ! tunica fibrosa of eyeball +relationship: branching_part_of UBERON:0002058 ! main ciliary ganglion +relationship: innervates UBERON:0001605 ! ciliary muscle +relationship: innervates UBERON:0012430 ! tunica fibrosa of eyeball +relationship: part_of UBERON:0002058 ! main ciliary ganglion + +[Term] +id: UBERON:0022303 +name: nervous system cell part layer +def: "Single layer of a laminar structure, identified by different density, arrangement or size of cells and processes arranged in flattened layers or lamina[CUMBO]." [NLX:149357] +subset: cumbo +synonym: "lamina" BROAD [CUMBO:CUMBO] +synonym: "layer" BROAD [CUMBO:CUMBO] +xref: NLX:149357 +is_a: UBERON:0005162 ! multi cell part structure +relationship: part_of UBERON:0001016 ! nervous system + +[Term] +id: UBERON:0022314 +name: superior colliculus stratum zonale +def: "Most superficial layer of the superior colliculus consisting primarily of thin fibers derived primarily from the occipital cortex (Brodal, Neurological Anatomy, 2nd 3d, 1981, pg. 544)" [NLX:144108] +subset: defined_by_cytoarchitecture +synonym: "stratum zonale" RELATED [NLX:144108] +synonym: "zonal layer of superior colliculus" RELATED [NLX:144108] +xref: NLX:144108 +is_a: UBERON:0006783 ! layer of superior colliculus + +[Term] +id: UBERON:0022315 +name: primary motor cortex layer 5 +synonym: "primary motor cortex lamina V" RELATED [NLX:144263] +synonym: "primary motor cortex layer V" RELATED [NLX:144263] +xref: NLX:144263 +is_a: UBERON:0002301 ! layer of neocortex +relationship: part_of UBERON:0001384 {source="nlx"} ! primary motor cortex +relationship: part_of UBERON:0005394 {source="nlx"} ! cortical layer V + +[Term] +id: UBERON:0022316 +name: primary motor cortex layer 6 +synonym: "primary motor cortex lamina 6" RELATED [NLX:144264] +synonym: "primary motor cortex lamina VI" RELATED [NLX:144264] +synonym: "primary motor cortex layer VI" RELATED [NLX:144264] +xref: NLX:144264 +is_a: UBERON:0002301 ! layer of neocortex +relationship: part_of UBERON:0001384 {source="nlx"} ! primary motor cortex +relationship: part_of UBERON:0005395 {source="nlx"} ! cortical layer VI + +[Term] +id: UBERON:0022317 +name: olfactory cortex layer 1 +def: "Surface layer of the olfactory cortex that contains dendrites, fiber systems and a small number of neurons. It has been divided into a superficial part and a deep part." [NLX:152609] +synonym: "layer 1 of olfactory cortex" RELATED [NLX:152609] +synonym: "olfactory cortex plexiform layer" RELATED [NLX:152609] +xref: NLX:152609 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +intersection_of: UBERON:0022303 ! nervous system cell part layer +intersection_of: bounding_layer_of UBERON:0002894 ! olfactory cortex +relationship: bounding_layer_of UBERON:0002894 ! olfactory cortex +relationship: has_part UBERON:0006134 ! nerve fiber +relationship: part_of UBERON:0002894 {source="nlx"} ! olfactory cortex + +[Term] +id: UBERON:0022318 +name: olfactory cortex layer 2 +def: "Middle layer of olfactory cortex lying deep to layer 1 and superficial to layer 3, characterized by a compact layer of cell bodies. It can be divided into a superficial part and a deep part." [NLX:152610] +synonym: "layer 2 of olfactory cortex" RELATED [NLX:152610] +xref: NLX:152610 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +intersection_of: UBERON:0022303 ! nervous system cell part layer +intersection_of: immediately_deep_to UBERON:0022317 ! olfactory cortex layer 1 +relationship: immediately_deep_to UBERON:0022317 ! olfactory cortex layer 1 +relationship: part_of UBERON:0002894 {source="nlx"} ! olfactory cortex + +[Term] +id: UBERON:0022319 +name: lateral geniculate nucleus parvocellular layer +def: "Layer of the lateral geniculate nucleus characterized by small cells (adapted from Wikipedia: https://en.wikipedia.org/wiki/Lateral_geniculate_nucleus)" [NLX:152619] +synonym: "LGN P-cell layer" EXACT [NLX:152619] +synonym: "parvocellular layer of lateral geniculate nucleus" RELATED [NLX:152619] +xref: NLX:152619 +is_a: UBERON:0013605 ! layer of lateral geniculate body + +[Term] +id: UBERON:0022320 +name: dorsal cochlear nucleus pyramidal cell layer +xref: NLX:153848 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +relationship: part_of UBERON:0002829 ! dorsal cochlear nucleus + +[Term] +id: UBERON:0022323 +name: entorhinal cortex layer 4 +def: "Layer of entorhinal cortex lying superficial to layer 5 and deep to layer 3, that is relatively acellular. (Paxinos, The rat nervous system, Academic Press, 1995, pg 473-474)." [NLX:39987] +comment: This layer is better developed in the medial entorhinal cortex although species differences are apparent[DOI:10.1155/2008/381243] +synonym: "entorhinal cortex layer IV" RELATED [NLX:39987] +synonym: "lamina dessicans" RELATED [https://doi.org/10.1155/2008/381243] +synonym: "lamina dessicans of entorhinal cortex" RELATED [https://doi.org/10.1155/2008/381243, NLX:39987] +synonym: "layer 4 of entorhinal cortex" RELATED [NLX:39987] +xref: NLX:39987 +xref: NLXANAT:1005008 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +intersection_of: UBERON:0022303 ! nervous system cell part layer +intersection_of: immediately_deep_to UBERON:0022327 ! entorhinal cortex layer 3 +relationship: composed_primarily_of UBERON:0006134 ! nerve fiber +relationship: immediately_deep_to UBERON:0022327 ! entorhinal cortex layer 3 +relationship: part_of UBERON:0002728 {source="nlx"} ! entorhinal cortex + +[Term] +id: UBERON:0022325 +name: entorhinal cortex layer 5 +def: "Layer of entorhinal cortex lying superficial to layer 6 and deep to layer 4 characterized by large pyramidal neurons that are darkly stained in Nissl preparations (Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474)" [NLX:58] +subset: defined_by_cytoarchitecture +synonym: "entorhinal cortex layer V" EXACT [https://doi.org/10.1155/2008/381243] +xref: NLX:58 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +intersection_of: UBERON:0022303 ! nervous system cell part layer +intersection_of: immediately_deep_to UBERON:0022323 ! entorhinal cortex layer 4 +relationship: immediately_deep_to UBERON:0022323 ! entorhinal cortex layer 4 +relationship: part_of UBERON:0002728 {source="nlx"} ! entorhinal cortex + +[Term] +id: UBERON:0022326 +name: molecular layer of dorsal cochlear nucleus +synonym: "dorsal cochlear nucleus molecular layer" RELATED [NLX:89] +synonym: "MoC" RELATED ABBREVIATION [] +xref: NLX:89 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 {source="nlx"} ! nervous system cell part layer +relationship: part_of UBERON:0002829 {source="nlx"} ! dorsal cochlear nucleus + +[Term] +id: UBERON:0022327 +name: entorhinal cortex layer 3 +alt_id: UBERON:0032288 +def: "Layer of the entorhinal cortex lying superficial to layer 4and deep to layer 2. It is characterized by cells of various sizes and shapes with a predominance of pyramidal cells (Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474)" [NLX:93650] +subset: defined_by_cytoarchitecture +synonym: "entorhinal cortex layer III" RELATED [NLX:93650] +synonym: "entorhinal cortex, pyramidal layer" EXACT [NLXANAT:20090702] +synonym: "layer 3 of entorhinal cortex" RELATED [NLX:93650] +synonym: "pyramidal layer of entorhinal cortex" EXACT [NLXANAT:20090702] +synonym: "pyramidal layer of entorhinal cortex" RELATED [https://doi.org/10.1155/2008/381243] +xref: NLX:93650 +xref: NLXANAT:20090702 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +intersection_of: UBERON:0022303 ! nervous system cell part layer +intersection_of: immediately_deep_to UBERON:0022337 ! entorhinal cortex layer 2 +relationship: immediately_deep_to UBERON:0022337 ! entorhinal cortex layer 2 +relationship: part_of UBERON:0002728 {source="nlx"} ! entorhinal cortex + +[Term] +id: UBERON:0022329 +name: entorhinal cortex layer 6 +def: "Layer of entorhinal cortex lying superficial to the cerebral white matter and deep to layer 5 characterized by cells of various shapes and sizes (Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474)" [NLX:98] +comment: This layer is delineated by the white matter, multiple layers can be distinguished, more in particular in primates[DOI:10.1155/2008/381243] +subset: defined_by_cytoarchitecture +synonym: "entorhinal cortex layer VI" EXACT [https://doi.org/10.1155/2008/381243, NLX:98] +synonym: "layer 6 region of entorhinal cortex" RELATED [NLX:98] +xref: NLX:98 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +intersection_of: UBERON:0022303 ! nervous system cell part layer +intersection_of: immediately_deep_to UBERON:0022325 ! entorhinal cortex layer 5 +relationship: immediately_deep_to UBERON:0022325 ! entorhinal cortex layer 5 +relationship: part_of UBERON:0002728 {source="nlx"} ! entorhinal cortex + +[Term] +id: UBERON:0022336 +name: entorhinal cortex layer 1 +def: "Layer of the entorhinal cortex that is most superficial, continuous with layer 1 of adjacent neocortex and the molecular layer of the subiculum, lying deep to the pial layer and superficial to layer 2. It is relatively acellular consisting mostly of fibers running transversely relative to the cortical surface (Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474)" [NLXANAT:090820] +subset: defined_by_cytoarchitecture +synonym: "EC layer 1" RELATED ABBREVIATION [] +synonym: "entorhinal cortex layer I" RELATED [NLXANAT:090820] +synonym: "entorhinal cortex molecular layer" RELATED [NLXANAT:090820] +synonym: "layer I of entorhinal cortex" RELATED [NLXANAT:090820] +synonym: "molecular layer of entorhinal cortex" EXACT [https://doi.org/10.1155/2008/381243, NLXANAT:090820, NLXANAT:20090701] +synonym: "superficial plexiform layer of entorhinal cortex" EXACT [https://doi.org/10.1155/2008/381243] +xref: NLXANAT:090820 +xref: NLXANAT:20090701 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +intersection_of: UBERON:0022303 ! nervous system cell part layer +intersection_of: bounding_layer_of UBERON:0002728 ! entorhinal cortex +relationship: bounding_layer_of UBERON:0002728 ! entorhinal cortex +relationship: composed_primarily_of UBERON:0006134 ! nerve fiber +relationship: part_of UBERON:0002728 {source="nlx"} ! entorhinal cortex + +[Term] +id: UBERON:0022337 +name: entorhinal cortex layer 2 +def: "Layer of the entorhinal cortex lying superficial to layer 3 and deep to layer 1. It is characterized by medium-to large sized stellate cells that are grouped into prominent clusters, particularly in the rostral entorhinal cortex (Adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 474)" [NLXANAT:090821] +synonym: "EC layer 2" RELATED ABBREVIATION [] +synonym: "entorhinal cortex layer II" RELATED [NLXANAT:090821] +synonym: "layer 2 of entorhinal cortex" RELATED [NLXANAT:090821] +synonym: "layer II of entorhinal cortex" RELATED [NLXANAT:090821] +synonym: "outermost cell layer of entorhinal cortex" RELATED [https://doi.org/10.1155/2008/381243] +xref: NLXANAT:090821 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +intersection_of: UBERON:0022303 ! nervous system cell part layer +intersection_of: immediately_deep_to UBERON:0022336 ! entorhinal cortex layer 1 +relationship: immediately_deep_to UBERON:0022336 ! entorhinal cortex layer 1 +relationship: part_of UBERON:0002728 {source="nlx"} ! entorhinal cortex + +[Term] +id: UBERON:0022340 +name: piriform cortex layer 2a +def: "Superficial region of layer 2 of the piriform cortex characterized by a less dense packing of cells and a concentration of semilunar cell bodies" [NLXANAT:091007] +subset: defined_by_cytoarchitecture +synonym: "layer 2a of piriform cortex" RELATED [NLXANAT:091007] +synonym: "layer IIa of piriform cortex" RELATED [NLXANAT:091007] +synonym: "piriform cortex layer IIa" RELATED [NLXANAT:091007] +xref: NLXANAT:091007 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 {source="nlx"} ! nervous system cell part layer +relationship: part_of UBERON:0014280 {source="nlx"} ! piriform cortex layer 2 + +[Term] +id: UBERON:0022341 +name: piriform cortex layer 2b +def: "Deeper of two subdivisions of piriform layer 2 characterized by more densely packed cell bodies dominated by pyramidal cell bodies." [NLXANAT:091008] +subset: defined_by_cytoarchitecture +xref: NLXANAT:091008 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 {source="nlx"} ! nervous system cell part layer +relationship: part_of UBERON:0014280 {source="nlx"} ! piriform cortex layer 2 + +[Term] +id: UBERON:0022346 +name: dentate gyrus molecular layer middle +synonym: "DG middle stratum moleculare" RELATED [NLXANAT:1008003] +synonym: "middle layer of dentate gyrus molecular layer" RELATED [NLXANAT:1008003] +xref: FMA:277810 +xref: NLXANAT:1008003 +is_a: UBERON:0002304 ! layer of dentate gyrus +relationship: part_of UBERON:0004679 {source="nlx"} ! dentate gyrus molecular layer + +[Term] +id: UBERON:0022347 +name: dentate gyrus molecular layer inner +def: "Inner third of the dentate gyrus" [NLXANAT:1008004] +synonym: "DG inner stratum moleculare" RELATED [NLXANAT:1008004] +synonym: "inner layer of dentate gyrus molecular layer" RELATED [NLXANAT:1008004] +xref: FMA:277812 +xref: NLXANAT:1008004 +is_a: UBERON:0002304 ! layer of dentate gyrus +relationship: part_of UBERON:0004679 {source="nlx"} ! dentate gyrus molecular layer + +[Term] +id: UBERON:0022348 +name: dentate gyrus granule cell layer inner blade +synonym: "enclosed blade of stratum granulare" RELATED [NLXANAT:1008005] +synonym: "extrapyramidal blade dentate gyrus granule cell layer" RELATED [NLXANAT:1008005] +synonym: "extrapyramidal blade of stratum granulare" RELATED [NLXANAT:1008005] +synonym: "inner blade of dentate gyrus granule cell layer" RELATED [NLXANAT:1008005] +synonym: "inner blade of stratum granulare" RELATED [NLXANAT:1008005] +xref: NLXANAT:1008005 +is_a: UBERON:0002304 ! layer of dentate gyrus +relationship: part_of UBERON:0005381 {source="nlx"} ! dentate gyrus granule cell layer + +[Term] +id: UBERON:0022349 +name: dentate gyrus granule cell layer outer blade +synonym: "exposed blade of stratum granulare" RELATED [NLXANAT:1008006] +synonym: "infrapyramidal blade dentate gyrus granule cell layer" RELATED [NLXANAT:1008006] +synonym: "infrapyramidal blade of stratum granulare" RELATED [NLXANAT:1008006] +synonym: "outer blade of dentate gyrus granule cell layer" RELATED [NLXANAT:1008006] +synonym: "outer blade of stratum granulare" RELATED [NLXANAT:1008006] +xref: NLXANAT:1008006 +is_a: UBERON:0002304 ! layer of dentate gyrus +relationship: part_of UBERON:0005381 {source="nlx"} ! dentate gyrus granule cell layer + +[Term] +id: UBERON:0022350 +name: visceral serous membrane +def: "Serous membrane layer that is adjacent to and lines an organ." [http://orcid.org/0000-0002-6601-2165] +synonym: "visceral wall of serous membrane" EXACT [FMA:15860] +xref: FMA:15860 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004923 ! organ component layer +intersection_of: UBERON:0004923 ! organ component layer +intersection_of: adjacent_to UBERON:0000062 ! organ +intersection_of: part_of UBERON:0000042 ! serous membrane +relationship: adjacent_to UBERON:0000062 ! organ +relationship: part_of UBERON:0000042 ! serous membrane + +[Term] +id: UBERON:0022351 +name: parietal serous membrane +def: "Serous membrane layer that lines to a body cavity." [http://orcid.org/0000-0002-6601-2165] +synonym: "cavity lining" BROAD [MA:0002448] +synonym: "parietal wall of serous membrane" EXACT [FMA:15859] +xref: FMA:15859 +xref: MA:0002448 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004923 ! organ component layer +intersection_of: UBERON:0004923 ! organ component layer +intersection_of: adjacent_to UBERON:0002553 ! anatomical cavity +intersection_of: part_of UBERON:0000042 ! serous membrane +relationship: adjacent_to UBERON:0002553 ! anatomical cavity +relationship: part_of UBERON:0000042 ! serous membrane + +[Term] +id: UBERON:0022352 +name: medial orbital frontal cortex +def: "Component of the orbtial frontal cortex. The rostral boundary is the first slice where the medial orbital gyrus became visible whereas the caudal boundary is the disappearance of the medial orbital gyrus/gyrus rectus. The medial and lateral boundaries are the cingulate cortex on the u2018inflatedu2019 surface and the medial bank of the superior frontal gyrus (or the cingulate gyrus when visible) respectively (Christine Fennema-Notestine)." [BIRNLEX:1249] +synonym: "frontal medial cortex" BROAD [http://orcid.org/0000-0001-6755-0259] +synonym: "medial orbitofrontal cortex" EXACT [http://orcid.org/0000-0002-6601-2165] +xref: BIRNLEX:1249 +xref: FMA:273320 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +disjoint_from: UBERON:0022716 {source="lexical"} ! lateral orbital frontal cortex +relationship: part_of UBERON:0004167 {source="NIFSTD"} ! orbitofrontal cortex + +[Term] +id: UBERON:0022353 +name: posterior cingulate cortex +def: "Component of the cingulate cortex. The rostral and caudal extent were the caudal anterior and the isthmus divisions of the cingulate cortex respectively. The medial and lateral boundaries were the corpus callosum and as the superior frontal gyrus and/or paracentral lobule respectively (Christine Fennema-Notestine)." [BIRNLEX:950] +synonym: "cingulate gyrus, posterior division" RELATED [http://orcid.org/0000-0001-6755-0259] +synonym: "posterior cingular cortex" RELATED [http://en.wikipedia.org/wiki/Posterior_cingulate] +synonym: "posterior cingulate" BROAD [http://en.wikipedia.org/wiki/Posterior_cingulate] +xref: BIRNLEX:950 +xref: BTO:0004250 +xref: EFO:0002471 +xref: FMA:271593 +xref: Posterior:cingulate +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0003027 {source="NIFSTD"} ! cingulate cortex + +[Term] +id: UBERON:0022355 +name: basal layer of endometrium +def: "The layer of endometrial epithelium adjacent to the uterine cavity." [http://en.wikipedia.org/wiki/Endometrium#Histology] +synonym: "pars basalis of endometrium" EXACT [] +synonym: "stratum basalis of endometrium" EXACT [FMA:86492] +xref: FMA:86492 +xref: NCIT:C32189 +is_a: UBERON:0004811 ! endometrium epithelium +intersection_of: UBERON:0004811 ! endometrium epithelium +intersection_of: adjacent_to UBERON:0013769 ! uterine lumen +relationship: adjacent_to UBERON:0013769 ! uterine lumen + +[Term] +id: UBERON:0022356 +name: outer layer of endometrium +def: "The layer of endometrial epithelium adjacent to the myometrium." [http://en.wikipedia.org/wiki/Endometrium#Histology] +synonym: "functional layer of endometrium" EXACT [FMA:86493] +synonym: "stratum functionalis of endometrium" EXACT [FMA:86493] +xref: FMA:86493 +xref: NCIT:C32642 +is_a: UBERON:0004811 ! endometrium epithelium +intersection_of: UBERON:0004811 ! endometrium epithelium +intersection_of: adjacent_to UBERON:0001296 ! myometrium +relationship: adjacent_to UBERON:0001296 ! myometrium + +[Term] +id: UBERON:0022357 +name: mesentery of ileum +synonym: "ileal mesentery" EXACT [FMA:14652] +synonym: "ileum mesentery" EXACT [FMA:14652] +synonym: "mesoileum" EXACT [] +xref: FMA:14652 +is_a: UBERON:0001170 ! mesentery of small intestine +intersection_of: UBERON:0002095 ! mesentery +intersection_of: part_of UBERON:0002116 ! ileum +relationship: part_of UBERON:0002116 ! ileum + +[Term] +id: UBERON:0022358 +name: placenta blood vessel +def: "A blood vessel of the placenta." [GO:0060674] +synonym: "placental vessel" BROAD [] +xref: http://www.snomedbrowser.com/Codes/Details/280716005 +is_a: UBERON:0001981 ! blood vessel +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0001987 ! placenta +relationship: part_of UBERON:0001987 ! placenta + +[Term] +id: UBERON:0022360 +name: male mammary gland duct +def: "A mammary gland duct that is part of a male organism. This structure typically regresses." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0001765 ! mammary duct +intersection_of: UBERON:0001765 ! mammary duct +intersection_of: part_of UBERON:0003101 ! male organism +relationship: part_of UBERON:0003101 ! male organism + +[Term] +id: UBERON:0022361 +name: lung field +def: "A specific region of the foregut into the area in which the lung will develop." [GOC:dph, GOC:mtg_lung] +synonym: "lung field" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/34922002 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0007688 ! anlage +intersection_of: UBERON:0007688 ! anlage +intersection_of: has_potential_to_develop_into UBERON:0002048 ! lung +relationship: has_potential_to_develop_into UBERON:0002048 ! lung +relationship: part_of UBERON:0003258 ! endoderm of foregut + +[Term] +id: UBERON:0022364 +name: occipital fusiform gyrus +synonym: "FuGo" RELATED ABBREVIATION [DHBA:12152] +synonym: "occipital fusiform gyrus (OF)" EXACT [FMA:71033] +synonym: "occipitotemporal (fusiform) gyrus, occipital part" EXACT [DHBA:12152] +xref: DHBA:12152 +xref: FMA:71033 +xref: http://neuro.imm.dtu.dk/wiki/Occipital_fusiform_gyrus +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002766 ! fusiform gyrus +relationship: source_atlas Harvard-Oxford:Atlas + +[Term] +id: UBERON:0022367 +name: inferior lateral occipital cortex +synonym: "lateral occipital cortex, inferior division" EXACT [https://github.com/obophenotype/uberon/issues/630] +synonym: "lateral occipital cortex, inferior division (OLI)" EXACT [FMA:71034] +xref: FMA:71034 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0006114 ! lateral occipital cortex +relationship: source_atlas Harvard-Oxford:Atlas + +[Term] +id: UBERON:0022368 +name: superior lateral occipital cortex +synonym: "lateral occipital cortex, superior division" EXACT [https://github.com/obophenotype/uberon/issues/630] +xref: FMA:71035 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0006114 ! lateral occipital cortex +relationship: source_atlas Harvard-Oxford:Atlas + +[Term] +id: UBERON:0022383 +name: anterior parahippocampal gyrus +def: "The part of the parahippocampal gyrus that includes the perirhinal and entorhinal cortices." [http://en.wikipedia.org/wiki/Parahippocampal_gyrus] +synonym: "APH" RELATED ABBREVIATION [DHBA:12163] +synonym: "parahippocampal gyrus, anterior division" EXACT [http://orcid.org/0000-0001-6755-0259] +xref: DHBA:12163 +xref: FMA:71039 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002973 ! parahippocampal gyrus +relationship: source_atlas Harvard-Oxford:Atlas + +[Term] +id: UBERON:0022394 +name: posterior parahippocampal white matter +synonym: "posterior parahippocampal white matter" RELATED [NeuroNames:827] +synonym: "substantia medullaris parahippocampalis posterior" RELATED LATIN [NeuroNames:827] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=827 +is_a: UBERON:0016534 ! white matter of temporal lobe +is_a: UBERON:0016536 ! white matter of limbic lobe +intersection_of: UBERON:0002316 ! white matter +intersection_of: part_of UBERON:0002657 ! posterior parahippocampal gyrus +relationship: part_of UBERON:0002657 ! posterior parahippocampal gyrus + +[Term] +id: UBERON:0022395 +name: temporal fusiform gyrus +synonym: "FuGt" RELATED ABBREVIATION [DHBA:12143] +synonym: "occipitotemporal (fusiform) gyrus, temporal part" EXACT [DHBA:12143] +xref: DHBA:12143 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002766 ! fusiform gyrus +relationship: source_atlas Harvard-Oxford:Atlas + +[Term] +id: UBERON:0022396 +name: anterior temporal fusiform gyrus +synonym: "occipitotemporal (fusiform) gyrus, anterior division" EXACT [http://orcid.org/0000-0001-6755-0259] +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +disjoint_from: UBERON:0022397 {source="lexical"} ! posterior temporal fusiform gyrus +relationship: part_of UBERON:0002766 ! fusiform gyrus +relationship: source_atlas Harvard-Oxford:Atlas + +[Term] +id: UBERON:0022397 +name: posterior temporal fusiform gyrus +synonym: "occipitotemporal (fusiform) gyrus, posterior division" EXACT [http://orcid.org/0000-0001-6755-0259] +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002766 ! fusiform gyrus +relationship: source_atlas Harvard-Oxford:Atlas + +[Term] +id: UBERON:0022398 +name: paracingulate gyrus +synonym: "PaCG" RELATED ABBREVIATION [DHBA:146034872] +synonym: "paracingulate gyrus (PAC)" EXACT [FMA:71037] +xref: DHBA:146034872 +xref: FMA:71037 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000956 {source="FMA"} ! cerebral cortex +relationship: part_of UBERON:0016525 {source="DHBA"} ! frontal lobe + +[Term] +id: UBERON:0022420 +name: temporal part of superior longitudinal fasciculus +synonym: "superior longitudinal fasciculus, temporal division" EXACT [] +is_a: UBERON:0022248 ! cerebral nerve fasciculus +relationship: part_of UBERON:0022246 ! superior longitudinal fasciculus + +[Term] +id: UBERON:0022421 +name: pontocerebellar tract +def: "the second order neuron fibers of the corticopontocerebellar tracts that cross to the other side of the pons and run within the middle cerebellar peduncles, from the pons to the contralateral cerebellum." [http://en.wikipedia.org/wiki/Pontocerebellar_fibers] +synonym: "fibrae pontocerebellaris" EXACT LATIN [http://en.wikipedia.org/wiki/Pontocerebellar_fibers] +synonym: "pncb" RELATED ABBREVIATION [DHBA:12769] +synonym: "pontine crossing tract" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "pontocerebellar fibers" EXACT [NeuroNames:1345] +synonym: "tractus pontocerebellaris" EXACT LATIN [NeuroNames:1345] +xref: DHBA:12769 +xref: HBA:265505470 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1345 +xref: http://www.snomedbrowser.com/Codes/Details/360457005 +xref: Pontocerebellar:fibers +is_a: UBERON:0007702 ! tract of brain +relationship: part_of UBERON:0002152 {source="DHBA"} ! middle cerebellar peduncle + +[Term] +id: UBERON:0022423 +name: sagulum nucleus +def: "A collection of principally small and medium-sized cells in the midbrain tegmentum lying at the margin of the midbrain adjacent to the nuclei of the lateral lemniscus" [NLX:64080] +synonym: "nucleus saguli" EXACT LATIN [FMA:77492, FMA:TA] +synonym: "nucleus sagulum" RELATED LATIN [NeuroNames:1308] +synonym: "nucleus sagulum" RELATED [NLX:64080] +synonym: "Sag" RELATED ABBREVIATION [HBA:9486] +synonym: "sagular nucleus" RELATED [] +synonym: "sagulum" RELATED LATIN [NeuroNames:1308] +xref: DHBA:12313 +xref: FMA:77492 +xref: HBA:9486 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1308 +xref: NLX:64080 +is_a: UBERON:0011214 ! nucleus of midbrain tectum + +[Term] +id: UBERON:0022424 +name: supragenual nucleus of pontine tegmentum +def: "A group of neurons embedded in the pontine central gray of the pontine tegmentum. Located dorsal to the internal genu of the facial nerve, it is found in the human ( Paxinos-2012 ), the macaque ( Paxinos-2009a ), the rat ( Swanson-2004 ), and the mouse ( Franklin-2008 ). Functionally it is part of the dorsal pontine gray of the subcortical motor system ( Swanson-2004 )" [NeuroNames:1981] +synonym: "SGe" RELATED ABBREVIATION [DHBA:12662] +synonym: "supragenual nucleus" EXACT [NeuroNames:1981] +xref: DHBA:12662 +xref: DMBA:17190 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1981 +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009662 ! hindbrain nucleus +relationship: part_of UBERON:0003023 {source="DHBA", source="Neuronames-def"} ! pontine tegmentum + +[Term] +id: UBERON:0022425 +name: anterior corona radiata +synonym: "anterior portion of corona radiata" EXACT [DHBA:15541] +synonym: "cor-a" RELATED ABBREVIATION [DHBA:15541] +xref: DHBA:15541 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +disjoint_from: UBERON:0022427 {source="lexical"} ! posterior corona radiata +relationship: part_of UBERON:0004682 {source="DHBA"} ! corona radiata of neuraxis +relationship: source_atlas http://neuro.debian.net/pkgs/fsl-jhu-dti-whitematter-atlas.html + +[Term] +id: UBERON:0022426 +name: superior corona radiata +synonym: "cor-s" RELATED ABBREVIATION [DHBA:15542] +synonym: "superior portion of corona radiata" EXACT [DHBA:15542] +xref: DHBA:15542 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004682 {source="DHBA"} ! corona radiata of neuraxis +relationship: source_atlas http://neuro.debian.net/pkgs/fsl-jhu-dti-whitematter-atlas.html + +[Term] +id: UBERON:0022427 +name: posterior corona radiata +synonym: "cor-p" RELATED ABBREVIATION [DHBA:15543] +synonym: "posterior portion of corona radiata" EXACT [DHBA:15543] +xref: DHBA:15543 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004682 {source="DHBA"} ! corona radiata of neuraxis +relationship: source_atlas http://neuro.debian.net/pkgs/fsl-jhu-dti-whitematter-atlas.html + +[Term] +id: UBERON:0022428 +name: cingulate cortex cingulum +synonym: "cb-cx" RELATED ABBREVIATION [DHBA:15539] +synonym: "cingulum (cingulate gyrus)" EXACT [] +synonym: "cingulum bundle in cingulate cortex" EXACT [DHBA:15539] +synonym: "cingulum bundle in cingulate gyrus" EXACT [] +xref: DHBA:15539 +is_a: UBERON:0003961 ! cingulum of brain +intersection_of: UBERON:0003961 ! cingulum of brain +intersection_of: part_of UBERON:0003027 ! cingulate cortex +relationship: part_of UBERON:0003027 ! cingulate cortex + +[Term] +id: UBERON:0022429 +name: temporal cortex cingulum +synonym: "cb-tx" RELATED ABBREVIATION [DHBA:15540] +synonym: "cingulum (temporal gyrus)" EXACT [] +synonym: "cingulum bundle in temporal cortex" EXACT [DHBA:15540] +synonym: "cingulum bundle in temporal gyrus" EXACT [] +xref: DHBA:15540 +is_a: UBERON:0003961 ! cingulum of brain +intersection_of: UBERON:0003961 ! cingulum of brain +intersection_of: part_of UBERON:0001871 ! temporal lobe +relationship: part_of UBERON:0001871 ! temporal lobe + +[Term] +id: UBERON:0022430 +name: hippocampus cortex cingulum +synonym: "cingulum (Ammon's horn)" EXACT [] +synonym: "cingulum (hippocampus)" EXACT [] +synonym: "cingulum bundle in hippocampus" EXACT [] +is_a: UBERON:0003961 ! cingulum of brain +intersection_of: UBERON:0003961 ! cingulum of brain +intersection_of: part_of UBERON:0001954 ! Ammon's horn +relationship: part_of UBERON:0001954 ! Ammon's horn + +[Term] +id: UBERON:0022431 +name: obsolete simian fossa (macaque) +synonym: "fossa simiarum" RELATED [BIRNLEX:1616] +synonym: "fossa simiarum" RELATED LATIN [NeuroNames:46] +synonym: "FS" BROAD ABBREVIATION [BIRNLEX:1616] +synonym: "simian fossa" EXACT HUMAN_PREFERRED [BIRNLEX:1616] +synonym: "simian fossa" RELATED [NeuroNames:46] +is_obsolete: true +consider: BIRNLEX:1616 +consider: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=46 +consider: UMLS:C0694579 + +[Term] +id: UBERON:0022434 +name: primary superior olive +def: "Part of the superior olivary complex of nuclei in the caudal pontine tegmentum, situated within the trapezoid body in humans. (Brodal, Neurological Anatomy, 3rd edition, 1981, pg 617). In many species, it comprises a medial superior olivary nucleus and a lateral superior olivary nucleus." [BIRNLEX:900] +synonym: "superior olive" BROAD INCONSISTENT [BIRNLEX:900] +xref: BAMS:SOl +xref: BIRNLEX:900 +xref: DHBA:12468 +xref: HBA:9182 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=570 +xref: http://linkedlifedata.com/resource/umls/id/C0228444 +is_a: UBERON:0007245 ! nuclear complex of neuraxis +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: part_of UBERON:0002128 {source="NIFSTD"} ! superior olivary complex + +[Term] +id: UBERON:0022437 +name: dorsal periolivary nucleus +def: "." [http://en.wikipedia.org/wiki/Superior_olivary_complex#Dorsal_periolivary_nucleus_.28DPO.29] +synonym: "DPeO" RELATED ABBREVIATION [DMBA:17260] +synonym: "DPO" RELATED ABBREVIATION [] +synonym: "nuclei periolivares" BROAD LATIN [FMA:TA] +synonym: "peri-olivary nuclei" BROAD [FMA:72475] +xref: DHBA:15561 +xref: DMBA:17260 +xref: FMA:72475 +is_a: UBERON:0007247 ! nucleus of superior olivary complex +relationship: part_of UBERON:0002971 {source="Wikipedia"} ! periolivary nucleus + +[Term] +id: UBERON:0022438 +name: rostral anterior cingulate cortex +def: "Component of the cingulate cortex. The rostral boundary was the first appearance of the cingulate sulcus (inferior to the superior frontal sulcus) whereas the caudal boundary was the first appearance of the genu of the corpus callosum. The medial boundary was the medial aspect of the cortex. The supero-lateral boundary was the superior frontal gyrus whereas the infero-lateral boundary was defined as the medial division of the orbitofrontal gyrus (Christine Fennema-Notestine)." [BIRNLEX:975] +synonym: "rostral anterior cingulate cortex" EXACT HUMAN_PREFERRED [BIRNLEX:975] +xref: BIRNLEX:975 +xref: FMA:271599 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0009835 {source="NIFSTD"} ! anterior cingulate cortex + +[Term] +id: UBERON:0022453 +name: olfactory entorhinal cortex +def: "A part of the entorhinal area defined on the basis of connectivity. It is the rostral portion, which receives a projection from the olfactory bulb (Price-90)-Adapted from Brain Info" [BIRNLEX:2705] +synonym: "EOl" RELATED ABBREVIATION [BIRNLEX:2705] +xref: BIRNLEX:2705 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2274 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002728 {source="NIFSTD"} ! entorhinal cortex + +[Term] +id: UBERON:0022469 +name: primary olfactory cortex +def: "A group of structures defined by connectivity, namely, structures that receive axons from the olfactory bulb. They include the anterior olfactory nucleus, the anterior perforated substance, the rostral part of the medial amygdaloid nucleus (anterior cortical nucleus of amygdala), and structures in the anterior part of the parahippocampal gyrus, namely, the prepyriform area, most of the periamygdaloid area, and the rostral part of the entorhinal area (Price-90). Note that some authors have regarded the olfactory bulb itself as the primary olfactory area and the areas to which it projects as secondary (Anthoney-94). In the mouse (Dong-2004) and the rat (Swanson-2004), olfactory areas include the olfactory bulb, accessory olfactory bulb, anterior olfactory nucleus, tenia tecta, prepyriform area, postpiriform transition area, piriform amygdaloid area, nucleus of lateral olfactory tract, and cortical amygdaloid area." [BIRNLEX:2706] +synonym: "primary olfactory areas" RELATED [BIRNLEX:2706] +xref: BIRNLEX:2706 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002894 {source="NIFSTD"} ! olfactory cortex + +[Term] +id: UBERON:0022480 +name: obsolete predominantly gray regional part of pretectal region +synonym: "predominantly gray regional part of pretectal region" EXACT HUMAN_PREFERRED [BIRNLEX:1003] +synonym: "predominantly gray regional part of pretectal region" EXACT [BIRNLEX:1003] +is_obsolete: true +consider: BIRNLEX:1003 + +[Term] +id: UBERON:0022515 +name: obsolete regional part of organ cavity +is_obsolete: true +consider: BIRNLEX:1039 + +[Term] +id: UBERON:0022534 +name: pericalcarine cortex +def: "Component of the parietal lobe. The rostral boundary of the pericalcarine cortex was the first appearance of the calcarine sulcus whereas the caudal boundary was the most posterior coronal slice where the calcarine sulcus was visualized. The medial and lateral boundaries were the medial portion of the temporal and occipital cortices and the inferomedial end of the calcarine sulcus respectively (Christine Fennema-Notestine)." [BIRNLEX:1059] +synonym: "pericalcarine cortex" EXACT [BIRNLEX:1059] +synonym: "pericalcarine cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1059] +xref: BIRNLEX:1059 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001872 {source="NIFSTD"} ! parietal lobe + +[Term] +id: UBERON:0022543 +name: obsolete regional part of solitary nucleus +synonym: "regional part of solitary nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1068] +synonym: "regional part of solitary nucleus" EXACT [BIRNLEX:1068] +is_obsolete: true +consider: BIRNLEX:1068 + +[Term] +id: UBERON:0022569 +name: obsolete regional part of a lobe of the cerebellum +synonym: "regional part of a lobe of the cerebellum" EXACT [BIRNLEX:1094] +synonym: "regional part of a lobe of the cerebellum" EXACT HUMAN_PREFERRED [BIRNLEX:1094] +is_obsolete: true +consider: BIRNLEX:1094 + +[Term] +id: UBERON:0022575 +name: obsolete regional part of body system +is_obsolete: true +consider: BIRNLEX:11 + +[Term] +id: UBERON:0022598 +name: obsolete regional part of peripheral nervous system +synonym: "regional part of peripheral nervous system" EXACT [BIRNLEX:1122] +synonym: "regional part of peripheral nervous system" EXACT HUMAN_PREFERRED [BIRNLEX:1122] +is_obsolete: true +consider: BIRNLEX:1122 + +[Term] +id: UBERON:0022620 +name: obsolete regional part of eye +is_obsolete: true +consider: BIRNLEX:1145 + +[Term] +id: UBERON:0022647 +name: obsolete predominantly gray regional part of epithalamus +synonym: "predominantly gray regional part of epithalamus" EXACT [BIRNLEX:1174] +synonym: "predominantly gray regional part of epithalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1174] +is_obsolete: true +consider: BIRNLEX:1174 + +[Term] +id: UBERON:0022649 +name: habenulo-interpeduncular tract of diencephalon +synonym: "habenulo-interpeduncular tract of diencephalon" EXACT HUMAN_PREFERRED [BIRNLEX:1176] +synonym: "habenulo-interpeduncular tract of diencephalon" EXACT [BIRNLEX:1176] +xref: BIRNLEX:1176 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=461 +xref: http://linkedlifedata.com/resource/umls/id/C0228391 +is_a: UBERON:0005838 ! fasciculus of brain +intersection_of: UBERON:0001019 ! nerve fasciculus +intersection_of: part_of UBERON:0001894 ! diencephalon +intersection_of: part_of UBERON:0002138 ! habenulo-interpeduncular tract +relationship: part_of UBERON:0002138 ! habenulo-interpeduncular tract +relationship: part_of UBERON:0003931 {source="ZFA"} ! diencephalic white matter + +[Term] +id: UBERON:0022650 +name: obsolete regional part of parietal lobe +synonym: "regional part of parietal lobe" EXACT [BIRNLEX:1177] +synonym: "regional part of parietal lobe" EXACT HUMAN_PREFERRED [BIRNLEX:1177] +is_obsolete: true +consider: BIRNLEX:1177 + +[Term] +id: UBERON:0022654 +name: obsolete regional part of ear +synonym: "regional part of ear" EXACT [BIRNLEX:1181] +synonym: "regional part of ear" EXACT HUMAN_PREFERRED [BIRNLEX:1181] +is_obsolete: true +consider: BIRNLEX:1181 + +[Term] +id: UBERON:0022660 +name: obsolete regional part of occipital lobe +synonym: "regional part of occipital lobe" EXACT [BIRNLEX:1188] +synonym: "regional part of occipital lobe" EXACT HUMAN_PREFERRED [BIRNLEX:1188] +is_obsolete: true +consider: BIRNLEX:1188 + +[Term] +id: UBERON:0022665 +name: obsolete predominantly gray regional part of lateral hypothalamic region +synonym: "predominantly gray regional part of lateral hypothalamic region" EXACT [BIRNLEX:1193] +synonym: "predominantly gray regional part of lateral hypothalamic region" EXACT HUMAN_PREFERRED [BIRNLEX:1193] +is_obsolete: true +consider: BIRNLEX:1193 + +[Term] +id: UBERON:0022681 +name: obsolete regional part of cerebral peduncle +synonym: "regional part of cerebral peduncle" EXACT HUMAN_PREFERRED [BIRNLEX:1209] +synonym: "regional part of cerebral peduncle" EXACT [BIRNLEX:1209] +is_obsolete: true +consider: BIRNLEX:1209 + +[Term] +id: UBERON:0022695 +name: orbital gyri complex +synonym: "orbital gyri complex" EXACT [BIRNLEX:1223] +synonym: "orbital gyri complex" EXACT HUMAN_PREFERRED [BIRNLEX:1223] +synonym: "orgital_gyri" RELATED [BIRNLEX:1223] +xref: BIRNLEX:1223 +xref: http://linkedlifedata.com/resource/umls/id/C0152301 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0016525 {source="NIFSTD"} ! frontal lobe + +[Term] +id: UBERON:0022701 +name: obsolete predominantly gray regional part of posterior hypothalamic region +synonym: "predominantly gray regional part of posterior hypothalamic region" EXACT HUMAN_PREFERRED [BIRNLEX:1229] +synonym: "predominantly gray regional part of posterior hypothalamic region" EXACT [BIRNLEX:1229] +is_obsolete: true +consider: BIRNLEX:1229 + +[Term] +id: UBERON:0022716 +name: lateral orbital frontal cortex +def: "Component of the orbtial frontal cortex The rostral boundary is the first slice where the lateral orbital gyrus is apparent with the frontomarginal sulcus whereas the caudal boundary is the disappearance of the lateral orbital gyrus. The medial and lateral boundaries are the midpoint of the olfactory sulcus and the lateral bank of the lateral orbital sulcus and/or the circular insular sulcus respectively (Christine Fennema-Notestine)." [BIRNLEX:1244] +synonym: "lateral orbital frontal cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1244] +synonym: "lateral orbital frontal cortex" EXACT [BIRNLEX:1244] +xref: BIRNLEX:1244 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004167 {source="NIFSTD"} ! orbitofrontal cortex + +[Term] +id: UBERON:0022730 +name: transverse frontopolar gyri complex +synonym: "transverse frontopolar gyri" RELATED [BIRNLEX:1258] +synonym: "transverse frontopolar gyri complex" EXACT HUMAN_PREFERRED [BIRNLEX:1258] +synonym: "transverse frontopolar gyri complex" EXACT [BIRNLEX:1258] +xref: BIRNLEX:1258 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0016525 {source="NIFSTD"} ! frontal lobe + +[Term] +id: UBERON:0022732 +name: obsolete superficial feature part of midbrain tectum +synonym: "superficial feature part of midbrain tectum" EXACT HUMAN_PREFERRED [BIRNLEX:1260] +synonym: "superficial feature part of midbrain tectum" EXACT [BIRNLEX:1260] +is_obsolete: true +consider: BIRNLEX:1260 + +[Term] +id: UBERON:0022740 +name: obsolete superficial feature part of pons +synonym: "superficial feature part of pons" EXACT [BIRNLEX:1268] +synonym: "superficial feature part of pons" EXACT HUMAN_PREFERRED [BIRNLEX:1268] +is_obsolete: true +consider: BIRNLEX:1268 + +[Term] +id: UBERON:0022741 +name: obsolete regional part of central nervous system +synonym: "regional part of central nervous system" EXACT HUMAN_PREFERRED [BIRNLEX:1269] +synonym: "regional part of central nervous system" EXACT [BIRNLEX:1269] +is_obsolete: true +consider: BIRNLEX:1269 + +[Term] +id: UBERON:0022756 +name: obsolete regional part of sacral spinal cord +synonym: "regional part of sacral spinal cord" EXACT [BIRNLEX:1284] +synonym: "regional part of sacral spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1284] +is_obsolete: true +consider: BIRNLEX:1284 + +[Term] +id: UBERON:0022761 +name: obsolete superficial feature part of intermediate hypothalamic region +synonym: "superficial feature part of intermediate hypothalamic region" EXACT [BIRNLEX:1289] +synonym: "superficial feature part of intermediate hypothalamic region" EXACT HUMAN_PREFERRED [BIRNLEX:1289] +is_obsolete: true +consider: BIRNLEX:1289 + +[Term] +id: UBERON:0022776 +name: composite part spanning multiple base regional parts of brain +synonym: "composite part spanning multiple base regional parts of brain" EXACT HUMAN_PREFERRED [BIRNLEX:1304] +synonym: "composite part spanning multiple base regional parts of brain" EXACT [BIRNLEX:1304] +xref: BIRNLEX:1304 +is_a: UBERON:0034925 ! anatomical collection +relationship: part_of UBERON:0000955 ! brain + +[Term] +id: UBERON:0022778 +name: obsolete regional part of medial mammillary nucleus +synonym: "regional part of medial mammillary nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1306] +synonym: "regional part of medial mammillary nucleus" EXACT [BIRNLEX:1306] +is_obsolete: true +consider: BIRNLEX:1306 + +[Term] +id: UBERON:0022783 +name: paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part medial zone +synonym: "paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part medial zone" EXACT HUMAN_PREFERRED [BIRNLEX:1312] +synonym: "paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part medial zone" EXACT [BIRNLEX:1312] +xref: BIRNLEX:1312 +xref: HBA:4584 +is_a: UBERON:0002616 ! regional part of brain + +[Term] +id: UBERON:0022791 +name: paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part lateral zone +synonym: "paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part lateral zone" EXACT [BIRNLEX:1320] +synonym: "paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part lateral zone" EXACT HUMAN_PREFERRED [BIRNLEX:1320] +xref: BIRNLEX:1320 +xref: HBA:4585 +is_a: UBERON:0002616 ! regional part of brain + +[Term] +id: UBERON:0022822 +name: obsolete superficial feature part of diencephalon +synonym: "superficial feature part of diencephalon" EXACT HUMAN_PREFERRED [BIRNLEX:1351] +synonym: "superficial feature part of diencephalon" EXACT [BIRNLEX:1351] +is_obsolete: true +consider: BIRNLEX:1351 + +[Term] +id: UBERON:0022828 +name: obsolete predominantly gray regional part of medullary raphe nuclear complex +synonym: "predominantly gray regional part of medullary raphe nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:1357] +synonym: "predominantly gray regional part of medullary raphe nuclear complex" EXACT [BIRNLEX:1357] +is_obsolete: true +consider: BIRNLEX:1357 + +[Term] +id: UBERON:0022877 +name: obsolete regional part of oculomotor nuclear complex +synonym: "regional part of oculomotor nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:1405] +synonym: "regional part of oculomotor nuclear complex" EXACT [BIRNLEX:1405] +is_obsolete: true +consider: BIRNLEX:1405 + +[Term] +id: UBERON:0022890 +name: obsolete regional part of red nucleus +synonym: "regional part of red nucleus" EXACT [BIRNLEX:1418] +synonym: "regional part of red nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1418] +is_obsolete: true +consider: BIRNLEX:1418 + +[Term] +id: UBERON:0022895 +name: obsolete regional part of habenula +synonym: "regional part of habenula" EXACT [BIRNLEX:1423] +synonym: "regional part of habenula" EXACT HUMAN_PREFERRED [BIRNLEX:1423] +is_obsolete: true +consider: BIRNLEX:1423 + +[Term] +id: UBERON:0022937 +name: obsolete predominantly gray regional part of midbrain tegmentum +synonym: "predominantly gray regional part of midbrain tegmentum" EXACT HUMAN_PREFERRED [BIRNLEX:1465] +synonym: "predominantly gray regional part of midbrain tegmentum" EXACT [BIRNLEX:1465] +is_obsolete: true +consider: BIRNLEX:1465 + +[Term] +id: UBERON:0022941 +name: dorsal nerve root of sacral spinal cord +synonym: "dorsal nerve root of sacral spinal cord" EXACT [BIRNLEX:1469] +synonym: "dorsal nerve root of sacral spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1469] +synonym: "posterior nerve root of sacral spinal cord" RELATED [BIRNLEX:1469] +xref: BIRNLEX:1469 +is_a: UBERON:0009633 {source="NIFSTD"} ! root of sacral nerve +disjoint_from: UBERON:0024382 {source="NIFSTD"} ! ventral nerve root of lumbar spinal cord + +[Term] +id: UBERON:0022943 +name: reticulospinal tract +def: "The reticulospinal tract (or anterior reticulospinal tract) is an extrapyramidal motor tract which travels from the reticular formation." [http://en.wikipedia.org/wiki/Reticulospinal_tract] +synonym: "reticulospinal tract" EXACT HUMAN_PREFERRED [BIRNLEX:1471] +synonym: "reticulospinal tract" EXACT [BIRNLEX:1471] +xref: BIRNLEX:1471 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=805 +xref: http://linkedlifedata.com/resource/umls/id/C0175558 +xref: Reticulospinal:tract +is_a: UBERON:0001018 {source="NIFSTD"} ! axon tract +relationship: part_of UBERON:0002316 {source="NIFSTD"} ! white matter + +[Term] +id: UBERON:0022944 +name: obsolete predominantly white regional part of midbrain tegmentum +synonym: "predominantly white regional part of midbrain tegmentum" EXACT [BIRNLEX:1472] +synonym: "predominantly white regional part of midbrain tegmentum" EXACT HUMAN_PREFERRED [BIRNLEX:1472] +is_obsolete: true +consider: BIRNLEX:1472 + +[Term] +id: UBERON:0022957 +name: obsolete regional part of midbrain reticular formation +synonym: "regional part of midbrain reticular formation" EXACT [BIRNLEX:1485] +synonym: "regional part of midbrain reticular formation" EXACT HUMAN_PREFERRED [BIRNLEX:1485] +is_obsolete: true +consider: BIRNLEX:1485 + +[Term] +id: UBERON:0022976 +name: obsolete regional part of cervical spinal cord +synonym: "regional part of cervical spinal cord" EXACT [BIRNLEX:1505] +synonym: "regional part of cervical spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1505] +is_obsolete: true +consider: BIRNLEX:1505 + +[Term] +id: UBERON:0022988 +name: obsolete regional part of thalamus +synonym: "regional part of thalamus" EXACT [BIRNLEX:1517] +synonym: "regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1517] +is_obsolete: true +consider: BIRNLEX:1517 + +[Term] +id: UBERON:0022997 +name: obsolete superficial feature part of medulla oblongata +synonym: "superficial feature part of medulla oblongata" EXACT [BIRNLEX:1526] +synonym: "superficial feature part of medulla oblongata" EXACT HUMAN_PREFERRED [BIRNLEX:1526] +is_obsolete: true +consider: BIRNLEX:1526 + +[Term] +id: UBERON:0023007 +name: obsolete predominantly white regional part of posterior hypothalamic region +synonym: "predominantly white regional part of posterior hypothalamic region" EXACT HUMAN_PREFERRED [BIRNLEX:1536] +synonym: "predominantly white regional part of posterior hypothalamic region" EXACT [BIRNLEX:1536] +is_obsolete: true +consider: BIRNLEX:1536 + +[Term] +id: UBERON:0023013 +name: obsolete superficial feature part of posterior hypothalamic region +synonym: "superficial feature part of posterior hypothalamic region" EXACT [BIRNLEX:1542] +synonym: "superficial feature part of posterior hypothalamic region" EXACT HUMAN_PREFERRED [BIRNLEX:1542] +is_obsolete: true +consider: BIRNLEX:1542 + +[Term] +id: UBERON:0023020 +name: obsolete predominantly white regional part of septum pellucidum +synonym: "predominantly white regional part of septum pellucidum" EXACT [BIRNLEX:1549] +synonym: "predominantly white regional part of septum pellucidum" EXACT HUMAN_PREFERRED [BIRNLEX:1549] +is_obsolete: true +consider: BIRNLEX:1549 + +[Term] +id: UBERON:0023044 +name: obsolete regional part of cerebral white matter +synonym: "regional part of cerebral white matter" EXACT HUMAN_PREFERRED [BIRNLEX:1573] +synonym: "regional part of cerebral white matter" EXACT [BIRNLEX:1573] +is_obsolete: true +consider: BIRNLEX:1573 + +[Term] +id: UBERON:0023047 +name: obsolete regional part of hypophysis +synonym: "regional part of hypophysis" EXACT [BIRNLEX:1576] +synonym: "regional part of hypophysis" EXACT HUMAN_PREFERRED [BIRNLEX:1576] +is_obsolete: true +consider: BIRNLEX:1576 + +[Term] +id: UBERON:0023074 +name: obsolete regional part of lumbar spinal cord +synonym: "regional part of lumbar spinal cord" EXACT [BIRNLEX:1602] +synonym: "regional part of lumbar spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1602] +is_obsolete: true +consider: BIRNLEX:1602 + +[Term] +id: UBERON:0023092 +name: obsolete predominantly white regional part of epithalamus +synonym: "predominantly white regional part of epithalamus" EXACT [BIRNLEX:1620] +synonym: "predominantly white regional part of epithalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1620] +is_obsolete: true +consider: BIRNLEX:1620 + +[Term] +id: UBERON:0023094 +name: posterodorsal nucleus of medial geniculate body +synonym: "nucleus corporis geniculati medialis, pars posterodorsalis" RELATED [BIRNLEX:1622] +synonym: "posterodorsal nucleus of medial geniculate body" EXACT HUMAN_PREFERRED [BIRNLEX:1622] +synonym: "posterodorsal nucleus of medial geniculate body" EXACT [BIRNLEX:1622] +synonym: "posterodorsal nucleus of medial geniculate complex" RELATED [BIRNLEX:1622] +xref: BIRNLEX:1622 +xref: HBA:4447 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=851 +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +relationship: part_of UBERON:0001927 {source="NIFSTD"} ! medial geniculate body + +[Term] +id: UBERON:0023097 +name: obsolete regional part of temporal lobe +synonym: "regional part of temporal lobe" EXACT HUMAN_PREFERRED [BIRNLEX:1625] +synonym: "regional part of temporal lobe" EXACT [BIRNLEX:1625] +is_obsolete: true +consider: BIRNLEX:1625 + +[Term] +id: UBERON:0023102 +name: obsolete predominantly gray regional part of intermediate hypothalamic region +synonym: "predominantly gray regional part of intermediate hypothalamic region" EXACT HUMAN_PREFERRED [BIRNLEX:1630] +synonym: "predominantly gray regional part of intermediate hypothalamic region" EXACT [BIRNLEX:1630] +is_obsolete: true +consider: BIRNLEX:1630 + +[Term] +id: UBERON:0023127 +name: obsolete predominantly gray regional part of hypothalamus +synonym: "predominantly gray regional part of hypothalamus" EXACT [BIRNLEX:1656] +synonym: "predominantly gray regional part of hypothalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1656] +is_obsolete: true +consider: BIRNLEX:1656 + +[Term] +id: UBERON:0023163 +name: obsolete regional part of septum +synonym: "regional part of septum" EXACT [BIRNLEX:1693] +synonym: "regional part of septum" EXACT HUMAN_PREFERRED [BIRNLEX:1693] +is_obsolete: true +consider: BIRNLEX:1693 + +[Term] +id: UBERON:0023255 +name: sub-lobar region +synonym: "sub-lobar region" EXACT [BIRNLEX:1788] +synonym: "sub-lobar region" EXACT HUMAN_PREFERRED [BIRNLEX:1788] +xref: BIRNLEX:1788 +is_a: UBERON:0016526 {source="NIFSTD"} ! lobe of cerebral hemisphere + +[Term] +id: UBERON:0023294 +name: obsolete cytoarchitectural part of cerebral cortex +synonym: "cytoarchitectural part of cerebral cortex" EXACT HUMAN_PREFERRED [BIRNLEX:2546] +synonym: "cytoarchitectural part of cerebral cortex" EXACT [BIRNLEX:2546] +is_obsolete: true +consider: BIRNLEX:2546 + +[Term] +id: UBERON:0023317 +name: obsolete regional part of ventral cochlear nucleus +synonym: "regional part of ventral cochlear nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:2570] +synonym: "regional part of ventral cochlear nucleus" EXACT [BIRNLEX:2570] +is_obsolete: true +consider: BIRNLEX:2570 + +[Term] +id: UBERON:0023362 +name: obsolete predominantly gray part of medulla oblongata +synonym: "predominantly gray part of medulla oblongata" EXACT HUMAN_PREFERRED [BIRNLEX:2633] +synonym: "predominantly gray part of medulla oblongata" EXACT [BIRNLEX:2633] +is_obsolete: true +consider: BIRNLEX:2633 + +[Term] +id: UBERON:0023378 +name: medullary anterior horn +synonym: "cornu anterius medullaris" EXACT LATIN [FMA:72610, FMA:TA] +synonym: "medullary anterior horn" EXACT HUMAN_PREFERRED [BIRNLEX:2649] +synonym: "medullary anterior horn" EXACT [BIRNLEX:2649] +xref: BIRNLEX:2649 +xref: FMA:72610 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=777 +xref: http://linkedlifedata.com/resource/umls/id/C0175539 +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata + +[Term] +id: UBERON:0023390 +name: medial subnucleus of solitary tract +synonym: "medial part" RELATED [BIRNLEX:2662] +synonym: "medial subnucleus of solitary tract" EXACT HUMAN_PREFERRED [BIRNLEX:2662] +synonym: "medial subnucleus of solitary tract" EXACT [BIRNLEX:2662] +synonym: "medial subnucleus of the solitary tract" EXACT [NeuroNames:745] +synonym: "nucleus of the solitary tract" RELATED [BIRNLEX:2662] +synonym: "solitary nucleus, left, meidal subnucleus" EXACT DUBIOUS [HBA:9661] +synonym: "solitary nucleus, medial subnucleus" EXACT [HBA:9661, http://orcid.org/0000-0002-6601-2165] +xref: BIRNLEX:2662 +xref: HBA:9661 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=745 +xref: http://linkedlifedata.com/resource/umls/id/C0175521 +is_a: UBERON:0009050 ! nucleus of solitary tract + +[Term] +id: UBERON:0023399 +name: obsolete regional part of spinal cord dorsal horn +synonym: "regional part of spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:2671] +synonym: "regional part of spinal cord dorsal horn" EXACT [BIRNLEX:2671] +is_obsolete: true +consider: BIRNLEX:2671 + +[Term] +id: UBERON:0023401 +name: obsolete regional part of spinal cord gray commissure +synonym: "regional part of spinal cord gray commissure" EXACT [BIRNLEX:2675] +synonym: "regional part of spinal cord gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:2675] +is_obsolete: true +consider: BIRNLEX:2675 + +[Term] +id: UBERON:0023404 +name: obsolete regional part of amygdala +synonym: "regional part of amygdala" EXACT HUMAN_PREFERRED [BIRNLEX:2678] +synonym: "regional part of amygdala" EXACT [BIRNLEX:2678] +is_obsolete: true +consider: BIRNLEX:2678 + +[Term] +id: UBERON:0023415 +name: lateral amygdaloid nucleus, dorsolateral part +synonym: "lateral amygdaloid nucleus, dorsolateral part" EXACT HUMAN_PREFERRED [BIRNLEX:2689] +synonym: "lateral amygdaloid nucleus, dorsolateral part" EXACT [BIRNLEX:2689] +xref: BIRNLEX:2689 +is_a: UBERON:0002616 ! regional part of brain + +[Term] +id: UBERON:0023416 +name: lateral amygdaloid nucleus, ventrolateral part +synonym: "lateral amygdaloid nucleus, ventrolateral part" EXACT [BIRNLEX:2690] +synonym: "lateral amygdaloid nucleus, ventrolateral part" EXACT HUMAN_PREFERRED [BIRNLEX:2690] +xref: BIRNLEX:2690 +is_a: UBERON:0002616 ! regional part of brain + +[Term] +id: UBERON:0023417 +name: lateral amygdaloid nucleus, ventromedial part +synonym: "lateral amygdaloid nucleus, ventromedial part" EXACT [BIRNLEX:2691] +synonym: "lateral amygdaloid nucleus, ventromedial part" EXACT HUMAN_PREFERRED [BIRNLEX:2691] +xref: BIRNLEX:2691 +is_a: UBERON:0002616 ! regional part of brain + +[Term] +id: UBERON:0023443 +name: superficial feature part of forebrain +synonym: "superficial feature part of forebrain" EXACT [BIRNLEX:4005] +synonym: "superficial feature part of forebrain" EXACT HUMAN_PREFERRED [BIRNLEX:4005] +xref: BIRNLEX:4005 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0001890 ! forebrain + +[Term] +id: UBERON:0023462 +name: superficial feature part of occipital lobe +synonym: "superficial feature part of occipital lobe" EXACT [BIRNLEX:4024] +synonym: "superficial feature part of occipital lobe" EXACT HUMAN_PREFERRED [BIRNLEX:4024] +xref: BIRNLEX:4024 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002021 ! occipital lobe + +[Term] +id: UBERON:0023536 +name: obsolete regional part of tongue +synonym: "regional part of tongue" EXACT HUMAN_PREFERRED [BIRNLEX:4098] +synonym: "regional part of tongue" EXACT [BIRNLEX:4098] +is_obsolete: true +consider: BIRNLEX:4098 + +[Term] +id: UBERON:0023541 +name: conical papilla +synonym: "conical papilla" EXACT [BIRNLEX:4103] +synonym: "conical papilla" EXACT HUMAN_PREFERRED [BIRNLEX:4103] +xref: BIRNLEX:4103 +xref: http://linkedlifedata.com/resource/umls/id/C0226967 +xref: http://linkedlifedata.com/resource/umls/id/C1289183 +is_a: UBERON:0001726 {source="NIFSTD"} ! papilla of tongue + +[Term] +id: UBERON:0023547 +name: obsolete regional part of stratum pyramidale hippocampi +synonym: "regional part of stratum pyramidale hippocampi" EXACT [BIRNLEX:4109] +synonym: "regional part of stratum pyramidale hippocampi" EXACT HUMAN_PREFERRED [BIRNLEX:4109] +is_obsolete: true +consider: BIRNLEX:4109 + +[Term] +id: UBERON:0023552 +name: obsolete regional part of stratum oriens +synonym: "regional part of stratum oriens" EXACT [BIRNLEX:4114] +synonym: "regional part of stratum oriens" EXACT HUMAN_PREFERRED [BIRNLEX:4114] +is_obsolete: true +consider: BIRNLEX:4114 + +[Term] +id: UBERON:0023556 +name: obsolete regional part of stratum radiatum +synonym: "regional part of stratum radiatum" EXACT HUMAN_PREFERRED [BIRNLEX:4118] +synonym: "regional part of stratum radiatum" EXACT [BIRNLEX:4118] +is_obsolete: true +consider: BIRNLEX:4118 + +[Term] +id: UBERON:0023560 +name: obsolete regional part of stratum lacunosum moleculare +synonym: "regional part of stratum lacunosum moleculare" EXACT [BIRNLEX:4122] +synonym: "regional part of stratum lacunosum moleculare" EXACT HUMAN_PREFERRED [BIRNLEX:4122] +is_obsolete: true +consider: BIRNLEX:4122 + +[Term] +id: UBERON:0023564 +name: cytoarchitectural part of dentate gyrus +synonym: "cytoarchitectural part of dentate gyrus" EXACT [BIRNLEX:4126] +synonym: "cytoarchitectural part of dentate gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:4126] +xref: BIRNLEX:4126 +is_a: UBERON:0002616 ! regional part of brain + +[Term] +id: UBERON:0023572 +name: obsolete regional part of basal nuclear complex +synonym: "regional part of basal nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:702] +synonym: "regional part of basal nuclear complex" EXACT [BIRNLEX:702] +is_obsolete: true +consider: BIRNLEX:702 + +[Term] +id: UBERON:0023587 +name: obsolete predominantly gray regional part of inferior colliculus +synonym: "predominantly gray regional part of inferior colliculus" EXACT [BIRNLEX:718] +synonym: "predominantly gray regional part of inferior colliculus" EXACT HUMAN_PREFERRED [BIRNLEX:718] +is_obsolete: true +consider: BIRNLEX:718 + +[Term] +id: UBERON:0023623 +name: ventral nerve root of sacral spinal cord +synonym: "anterior nerve root of sacral spinal cord" RELATED [BIRNLEX:755] +synonym: "ventral nerve root of sacral spinal cord" EXACT [BIRNLEX:755] +synonym: "ventral nerve root of sacral spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:755] +xref: BIRNLEX:755 +is_a: UBERON:0009633 {source="NIFSTD"} ! root of sacral nerve +disjoint_from: UBERON:0026006 {source="NIFSTD"} ! dorsal nerve root of lumbar spinal cord + +[Term] +id: UBERON:0023628 +name: obsolete regional part of anterior hypothalamic region +synonym: "regional part of anterior hypothalamic region" EXACT HUMAN_PREFERRED [BIRNLEX:761] +synonym: "regional part of anterior hypothalamic region" EXACT [BIRNLEX:761] +is_obsolete: true +consider: BIRNLEX:761 + +[Term] +id: UBERON:0023636 +name: obsolete regional part of pons +synonym: "regional part of pons" EXACT HUMAN_PREFERRED [BIRNLEX:771] +synonym: "regional part of pons" EXACT [BIRNLEX:771] +is_obsolete: true +consider: BIRNLEX:771 + +[Term] +id: UBERON:0023648 +name: obsolete regional part of granular layer of cerebellar cortex +synonym: "regional part of granular layer of cerebellar cortex" EXACT [BIRNLEX:784] +synonym: "regional part of granular layer of cerebellar cortex" EXACT HUMAN_PREFERRED [BIRNLEX:784] +is_obsolete: true +consider: BIRNLEX:784 + +[Term] +id: UBERON:0023649 +name: obsolete predominantly white regional part of hypothalamus +synonym: "predominantly white regional part of hypothalamus" EXACT [BIRNLEX:785] +synonym: "predominantly white regional part of hypothalamus" EXACT HUMAN_PREFERRED [BIRNLEX:785] +is_obsolete: true +consider: BIRNLEX:785 + +[Term] +id: UBERON:0023670 +name: obsolete predominantly white regional part of tectum +synonym: "predominantly white regional part of tectum" EXACT [BIRNLEX:808] +synonym: "predominantly white regional part of tectum" EXACT HUMAN_PREFERRED [BIRNLEX:808] +is_obsolete: true +consider: BIRNLEX:808 + +[Term] +id: UBERON:0023677 +name: obsolete predominantly gray regional part of tectum +synonym: "predominantly gray regional part of tectum" EXACT [BIRNLEX:815] +synonym: "predominantly gray regional part of tectum" EXACT HUMAN_PREFERRED [BIRNLEX:815] +is_obsolete: true +consider: BIRNLEX:815 + +[Term] +id: UBERON:0023687 +name: obsolete regional part of septal nuclear complex +synonym: "regional part of septal nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:825] +synonym: "regional part of septal nuclear complex" EXACT [BIRNLEX:825] +is_obsolete: true +consider: BIRNLEX:825 + +[Term] +id: UBERON:0023695 +name: obsolete superficial feature part of telencephalon +synonym: "superficial feature part of telencephalon" EXACT HUMAN_PREFERRED [BIRNLEX:833] +synonym: "superficial feature part of telencephalon" EXACT [BIRNLEX:833] +is_obsolete: true +consider: BIRNLEX:833 + +[Term] +id: UBERON:0023703 +name: obsolete regional part of fornix +synonym: "regional part of fornix" EXACT HUMAN_PREFERRED [BIRNLEX:842] +synonym: "regional part of fornix" EXACT [BIRNLEX:842] +is_obsolete: true +consider: BIRNLEX:842 + +[Term] +id: UBERON:0023740 +name: habenulo-interpeduncular tract of midbrain +synonym: "habenulo-interpeduncular tract of midbrain" EXACT HUMAN_PREFERRED [BIRNLEX:895] +synonym: "habenulo-interpeduncular tract of midbrain" EXACT [BIRNLEX:895] +xref: BIRNLEX:895 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=818 +is_a: UBERON:0005838 ! fasciculus of brain +intersection_of: UBERON:0001019 ! nerve fasciculus +intersection_of: part_of UBERON:0001891 ! midbrain +intersection_of: part_of UBERON:0002138 ! habenulo-interpeduncular tract +relationship: part_of UBERON:0001943 {source="NIFSTD"} ! midbrain tegmentum +relationship: part_of UBERON:0002138 ! habenulo-interpeduncular tract +relationship: part_of UBERON:0016554 ! white matter of midbrain + +[Term] +id: UBERON:0023752 +name: intermediate part of hypophysis +synonym: "intermediate lobe of hypophysis" RELATED [BIRNLEX:906] +synonym: "intermediate part of hypophysis" EXACT [BIRNLEX:906] +synonym: "intermediate part of hypophysis" EXACT HUMAN_PREFERRED [BIRNLEX:906] +synonym: "intermediate region of hypophysis" RELATED [BIRNLEX:906] +synonym: "middle lobe of hypophysis" RELATED [BIRNLEX:906] +synonym: "pituitary gland, intermediate lobe" RELATED [BIRNLEX:906] +xref: BIRNLEX:906 +xref: http://linkedlifedata.com/resource/umls/id/C0175321 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0002196 {source="NIFSTD"} ! adenohypophysis + +[Term] +id: UBERON:0023783 +name: obsolete gross anatomical part of cerebral cortex +synonym: "gross anatomical part of cerebral cortex" EXACT [BIRNLEX:940] +synonym: "gross anatomical part of cerebral cortex" EXACT HUMAN_PREFERRED [BIRNLEX:940] +is_obsolete: true +consider: BIRNLEX:940 + +[Term] +id: UBERON:0023787 +name: subicular complex +def: "A composite structure of the temporal lobe that includes the subiculum, the presubiculum and the parasubicular area (Amaral-90)" [BIRNLEX:944] +synonym: "subicular complex" EXACT [BIRNLEX:944] +synonym: "subicular complex" EXACT HUMAN_PREFERRED [BIRNLEX:944] +xref: BIRNLEX:944 +xref: FMA:275157 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2027 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation + +[Term] +id: UBERON:0023789 +name: obsolete regional part of limbic lobe +synonym: "regional part of limbic lobe" EXACT HUMAN_PREFERRED [BIRNLEX:947] +synonym: "regional part of limbic lobe" EXACT [BIRNLEX:947] +is_obsolete: true +consider: BIRNLEX:947 + +[Term] +id: UBERON:0023791 +name: obsolete regional part of hindbrain +synonym: "regional part of hindbrain" EXACT HUMAN_PREFERRED [BIRNLEX:949] +synonym: "regional part of hindbrain" EXACT [BIRNLEX:949] +is_obsolete: true +consider: BIRNLEX:949 + +[Term] +id: UBERON:0023812 +name: obsolete regional part of thoracic spinal cord +synonym: "regional part of thoracic spinal cord" EXACT [BIRNLEX:972] +synonym: "regional part of thoracic spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:972] +is_obsolete: true +consider: BIRNLEX:972 + +[Term] +id: UBERON:0023824 +name: obsolete regional part of frontal lobe +synonym: "regional part of frontal lobe" EXACT [BIRNLEX:984] +synonym: "regional part of frontal lobe" EXACT HUMAN_PREFERRED [BIRNLEX:984] +is_obsolete: true +consider: BIRNLEX:984 + +[Term] +id: UBERON:0023825 +name: obsolete predominantly white regional part of inferior colliculus +synonym: "predominantly white regional part of inferior colliculus" EXACT HUMAN_PREFERRED [BIRNLEX:985] +synonym: "predominantly white regional part of inferior colliculus" EXACT [BIRNLEX:985] +is_obsolete: true +consider: BIRNLEX:985 + +[Term] +id: UBERON:0023827 +name: obsolete cytoarchitectural part of the cerebellum +synonym: "cytoarchitectural part of the cerebellum" EXACT [BIRNLEX:987] +synonym: "cytoarchitectural part of the cerebellum" EXACT HUMAN_PREFERRED [BIRNLEX:987] +is_obsolete: true +consider: BIRNLEX:987 + +[Term] +id: UBERON:0023836 +name: gross anatomical parts of the cerebellum +synonym: "gross anatomical parts of the cerebellum" EXACT HUMAN_PREFERRED [BIRNLEX:996] +synonym: "gross anatomical parts of the cerebellum" EXACT [BIRNLEX:996] +xref: BIRNLEX:996 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002037 ! cerebellum + +[Term] +id: UBERON:0023852 +name: temporoparietal junction +def: "an area of the brain that locates at the interception of temporal and parietal cortices (at the posterior end of the Sylvian fissure)." [NLX:144255] +synonym: "temporoparietal junction" EXACT [NLX:144255] +xref: NLX:144255 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex + +[Term] +id: UBERON:0023855 +name: commissural nucleus of the solitary tract +synonym: "commissural nucleus of the solitary tract" EXACT [NLX:144259] +synonym: "commissural nucleus tractus solitarius" RELATED [NLX:144259] +xref: NLX:144259 +is_a: UBERON:0009050 ! nucleus of solitary tract + +[Term] +id: UBERON:0023859 +name: primary somatosensory cortex layer 6 +synonym: "primary somatosensory cortex lamina VI" EXACT [NLX:144265] +synonym: "primary somatosensory cortex lamina VI" RELATED [NLX:144265] +xref: NLX:144265 +is_a: UBERON:0002301 ! layer of neocortex +relationship: part_of UBERON:0008933 {source="NIFSTD"} ! primary somatosensory cortex + +[Term] +id: UBERON:0023861 +name: planum polare +def: "A portion of the superior temporal gyrus near the temporal pole in the human." [NLX:144291] +synonym: "planum polare" EXACT [NLX:144291] +xref: HBA:4177 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2020 +xref: NLX:144291 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002769 {source="NIFSTD"} ! superior temporal gyrus + +[Term] +id: UBERON:0023862 +name: hippocampal formation of GP94 +def: "The combined region of AmmonÕs horn, subicular complex and dentate gyrus; only fields CA1-CA3 of the hippocampus were considered to be part of the HF, field CA4 being included in the hilus of the dentate gyrus[1]" [NLX:144306] +synonym: "hippocampal formation of gp94" EXACT [NLX:144306] +xref: NLX:144306 +is_a: UBERON:0002616 ! regional part of brain + +[Term] +id: UBERON:0023865 +name: medial ventral tegmental area +synonym: "medial ventral tegmental area" EXACT [NLX:22533] +xref: NLX:22533 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0002691 {source="NIFSTD"} ! ventral tegmental area + +[Term] +id: UBERON:0023867 +name: islands of Calleja of olfactory tubercle +def: "Part of olfactory tubercle defined by dense aggregations of granule cells" [NLX:50741] +synonym: "islands of calleja of olfactory tubercle" EXACT [NLX:50741] +synonym: "islets of calleja" RELATED [NLX:50741] +xref: NLX:50741 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001881 {source="NIFSTD"} ! island of Calleja +relationship: part_of UBERON:0001883 {source="NIFSTD"} ! olfactory tubercle + +[Term] +id: UBERON:0023868 +name: isla magna of Calleja +def: "Regional part of telencephalon; the most prominent of the islands of Calleja located medially in the nucleus accumbens (adapted from Braininfo.org)." [NLX:55138] +synonym: "insula magna" RELATED [NLX:55138] +synonym: "isla magna of calleja" EXACT [NLX:55138] +synonym: "large island of calleja" RELATED [NLX:55138] +synonym: "major island of Calleja" EXACT [DHBA:10359] +xref: DHBA:10359 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2273 +xref: MBA:489 +xref: NLX:55138 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001881 {source="NIFSTD"} ! island of Calleja + +[Term] +id: UBERON:0023869 +name: obsolete body membrane +def: "Part of body that takes the form of a thin sheet of cells or fibrous material, e.g., the meningeal coverings of the brain[NIFSTD]." [NLXANAT:090201] +comment: This term was inherited from the migration of NIFSTD-Anatomy to Uberon. Upon consideration the same concept is better represented by existing classes in Uberon such as "membrnous organ". The following comment was inherited from http://uri.neuinfo.org/nif/nifstd/ Not sure this is the correct designation; FMA has "membranous organ" but that doesn't seem quite right either. +synonym: "body membrane" EXACT [NLXANAT:090201] +is_obsolete: true +consider: NLXANAT:090201 +consider: UBERON:0000158 + +[Term] +id: UBERON:0023879 +name: neural system +def: "A set of neural structures that subserve a specific function, e.g., visual system" [NLXANAT:090802] +synonym: "neural system" EXACT [NLXANAT:090802] +xref: NLXANAT:090802 +is_a: UBERON:0011216 ! organ system subdivision +relationship: part_of UBERON:0001016 ! nervous system + +[Term] +id: UBERON:0023900 +name: piriform cortex layer 1a +def: "Superficial part of plexiform layer (layer 1) of piriform cortex that receives afferents from the olfactory bulb by way of the lateral olfactory tract." [NLXANAT:091004] +synonym: "piriform cortex layer 1a" EXACT [NLXANAT:091004] +xref: NLXANAT:091004 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +relationship: part_of UBERON:0014277 {source="NIFSTD"} ! piriform cortex layer 1 + +[Term] +id: UBERON:0023901 +name: piriform cortex layer 1b +def: "Deeper part of the plexiform (layer 1) of piriform cortex characterized by projection of association fibers from other parts of the piriform cortex and other olfactory areas" [NLXANAT:091005] +synonym: "piriform cortex layer 1b" EXACT [NLXANAT:091005] +xref: NLXANAT:091005 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +relationship: part_of UBERON:0014277 {source="NIFSTD"} ! piriform cortex layer 1 + +[Term] +id: UBERON:0023915 +name: obsolete regional part of nose +synonym: "regional part of nose" EXACT [NLXANAT:100305] +is_obsolete: true +consider: NLXANAT:100305 + +[Term] +id: UBERON:0023920 +name: basal ganglia of rodent +def: "The basal ganglia of the rodent" [NLXANAT:100311] +synonym: "basal ganglia of rodent" EXACT [NLXANAT:100311] +synonym: "rodent basal ganglia" RELATED [NLXANAT:100311] +xref: NLXANAT:100311 +is_a: UBERON:0010011 {source="NIFSTD"} ! collection of basal ganglia + +[Term] +id: UBERON:0023927 +name: subbrachial nucleus of mouse of Franklin and Paxinos 2008 +synonym: "subbrachial nucleus of mouse of franklin and paxinos 2008" EXACT [NLXANAT:1005004] +xref: NLXANAT:1005004 +is_a: UBERON:0006119 {source="NIFSTD"} ! subbrachial nucleus + +[Term] +id: UBERON:0023928 +name: postrhinal cortex of rodent of Burwell et al 1995 +def: "Cortical region lying caudal to the perirhinal cortex in the rat. It encompasses the caudal levels of area 35 and the caudal portion of area 36 (ectorhinal cortex). It is bordered medially by agranular retrosplenial cortex and ventrally by the entorhinal cortex (with the exception of the caudomedial portion). The authors note that the ventral portion of the postrhinal cortex in rat may by homologous with the parahippocampal cortex in the monkey." [NLXANAT:1005005] +synonym: "postrhinal cortex" RELATED [NLXANAT:1005005] +synonym: "postrhinal cortex of rodent" RELATED [NLXANAT:1005005] +synonym: "postrhinal cortex of rodent of burwell et al 1995" EXACT [NLXANAT:1005005] +synonym: "rodent postrhinal cortex" RELATED [NLXANAT:1005005] +xref: NLXANAT:1005005 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001893 ! telencephalon + +[Term] +id: UBERON:0023932 +name: Sommer's sector +def: "Part of hippocampal formation comprising area CA1 and the subiculum (pg 425, Heimer, L. The human brain and spinal cord, Springer-Verlag, 1995)" [NLXANAT:1005009] +synonym: "sommer's sector" EXACT [NLXANAT:1005009] +synonym: "sommers sector" RELATED [NLXANAT:1005009] +xref: NLXANAT:1005009 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002421 ! hippocampal formation + +[Term] +id: UBERON:0023934 +name: olfactory bulb main glomerular layer +def: "The glomerular layer of the main olfactory bulb, lying deep to the olfactory nerve layer. It contains the glomeruli, neuropil rich spheroid structures surrounded by a distinctive shell of small neuros and glial cells (Paxinos, the Rat Nervous System, 2nd ed., Academic Press, 1995)." [NLXANAT:1005011] +synonym: "olfactory bulb main glomerular layer" EXACT [NLXANAT:1005011] +xref: NLXANAT:1005011 +is_a: UBERON:0005377 ! olfactory bulb glomerular layer +intersection_of: UBERON:0005377 ! olfactory bulb glomerular layer +intersection_of: part_of UBERON:0009951 ! main olfactory bulb +relationship: part_of UBERON:0009951 ! main olfactory bulb + +[Term] +id: UBERON:0023935 +name: obsolete telencephalon of primate +def: "The telencephalon of the primate" [NLXANAT:1005012] +synonym: "primate telencephalon" RELATED [NLXANAT:1005012] +synonym: "telencephalon of primate" EXACT [NLXANAT:1005012] +is_obsolete: true +consider: NLXANAT:1005012 + +[Term] +id: UBERON:0023936 +name: perirhinal cortex of Burwell et al 1995 +def: "Rostral portion of the parahippocampal cortex" [NLXANAT:1005013] +synonym: "perirhinal cortex" RELATED [NLXANAT:1005013] +synonym: "perirhinal cortex of burwell et al 1995" EXACT [NLXANAT:1005013] +xref: NLXANAT:1005013 +is_a: UBERON:0006083 {source="NIFSTD"} ! perirhinal cortex + +[Term] +id: UBERON:0023938 +name: obsolete telencephalon of rodent +def: "The telencephalon of a rodent" [NLXANAT:1005015] +comment: Made obsolete as we do not add taxon-specific classes, consider using a combination of the uberon class and NCBITaxon class +synonym: "rodent telencephalon" RELATED [NLXANAT:1005015] +synonym: "telencephalon of rodent" EXACT [NLXANAT:1005015] +is_obsolete: true +consider: NLXANAT:1005015 +consider: UBERON:0001893 + +[Term] +id: UBERON:0023939 +name: obsolete brain of rodent +def: "The brain of a rodent" [NLXANAT:1005016] +comment: Made obsolete as we do not add taxon-specific classes, consider using a combination of the uberon class and NCBITaxon class +synonym: "brain of rodent" EXACT [NLXANAT:1005016] +synonym: "rodent brain" RELATED [NLXANAT:1005016] +is_obsolete: true +consider: NLXANAT:1005016 +consider: UBERON:0000955 + +[Term] +id: UBERON:0023942 +name: obsolete olfactory bulb main of rodent +comment: Made obsolete as we do not add taxon-specific classes, consider using a combination of the uberon class and NCBITaxon class +synonym: "olfactory bulb main of rodent" EXACT [NLXANAT:1005019] +is_obsolete: true +consider: NLXANAT:1005019 +consider: UBERON:0009951 + +[Term] +id: UBERON:0023943 +name: molecular system +subset: non_informative +synonym: "molecular system" EXACT [NLXANAT:1005020] +xref: NLXANAT:1005020 +is_a: UBERON:0000467 {source="NIFSTD"} ! anatomical system + +[Term] +id: UBERON:0023958 +name: bed nuclei of the stria terminalis oval nucleus +def: "Part of bed nucleus of stria terminalis, comprising a distinct, large, egg-shaped collection of neurons that, together with the juxtacapsular (Ju) and rhomboid (Rh) nuclei, encompass the anterolateral area of the BST (Ju and Swanson, 1989)" [NLXANAT:1005035] +synonym: "bed nuclei of the stria terminalis oval nucleus" EXACT [NLXANAT:1005035] +xref: NLXANAT:1005035 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001880 {source="NIFSTD"} ! bed nucleus of stria terminalis + +[Term] +id: UBERON:0023983 +name: central cervical spinocerebellar tract +def: "Central cervical spinocerebellar tract" [NLXANAT:1010018] +synonym: "central cervical spinocerebellar tract" EXACT [NLXANAT:1010018] +xref: NLXANAT:1010018 +is_a: UBERON:0001018 ! axon tract +relationship: part_of UBERON:0005413 {source="NIFSTD"} ! spinocerebellar tract + +[Term] +id: UBERON:0023984 +name: rostral spinocerebellar tract +def: "Originates from cells rostral to Clarke's column and sends uncrossed axons through the lateral funiculus to the cerebellum. It reaches the cerebellum partly through the brachium conjunctivum and partly through the restiform body, terminating bilaterally in the anterior lobe of the cerebellum" [NLXANAT:1010019] +synonym: "rostral spinocerebellar tract" EXACT [NLXANAT:1010019] +xref: NLXANAT:1010019 +is_a: UBERON:0001018 ! axon tract +relationship: part_of UBERON:0005413 {source="NIFSTD"} ! spinocerebellar tract + +[Term] +id: UBERON:0023998 +name: cerebellum hemispheric lobule II +synonym: "alar central lobule" RELATED [NLXANAT:20081202] +synonym: "central lobule (hII)" RELATED [NLXANAT:20081202] +synonym: "hemispheric lobule ii" EXACT [NLXANAT:20081202] +synonym: "lobule H II of Larsell" EXACT [FMA:278665] +synonym: "lobule II of cerebellar hemisphere" EXACT [FMA:278665] +synonym: "lobule II of hemisphere of cerebellum" EXACT [FMA:278665] +xref: FMA:278665 +xref: NLXANAT:20081202 +is_a: UBERON:0004003 {source="NIFSTD"} ! cerebellum hemisphere lobule +is_a: UBERON:0014647 ! hemisphere part of cerebellar anterior lobe + +[Term] +id: UBERON:0023999 +name: cerebellum hemispheric lobule III +synonym: "alar central lobule" RELATED [NLXANAT:20081203] +synonym: "central lobule (hIII)" RELATED [NLXANAT:20081203] +synonym: "hemispheric lobule III" EXACT [NLXANAT:20081203] +synonym: "lobule H III of Larsell" EXACT [FMA:278672] +synonym: "lobule III of cerbellar hemisphere" EXACT [FMA:278672] +synonym: "lobule III of hemisphere of cerebellum" EXACT [FMA:278672] +xref: FMA:278672 +xref: NLXANAT:20081203 +is_a: UBERON:0004003 {source="NIFSTD"} ! cerebellum hemisphere lobule +is_a: UBERON:0014647 ! hemisphere part of cerebellar anterior lobe + +[Term] +id: UBERON:0024000 +name: cerebellum hemispheric lobule IV +synonym: "anterior quadrangular lobule" RELATED [NLXANAT:20081204] +synonym: "culmen lobule (hIV)" RELATED [NLXANAT:20081204] +synonym: "hemispheric lobule IV" EXACT [NLXANAT:20081204] +synonym: "lobule H IV of Larsell" EXACT [FMA:278683] +synonym: "lobule IV of cerebellar hemisphere" EXACT [FMA:278683] +synonym: "lobulus anterior" RELATED [NLXANAT:20081204] +synonym: "lobulus quadrangularis anterior" RELATED [NLXANAT:20081204] +synonym: "quadrangular lobule" RELATED [NLXANAT:20081204] +xref: FMA:272300 +xref: FMA:278683 +xref: NLXANAT:20081204 +is_a: UBERON:0004003 {source="NIFSTD"} ! cerebellum hemisphere lobule +is_a: UBERON:0014647 ! hemisphere part of cerebellar anterior lobe + +[Term] +id: UBERON:0024001 +name: cerebellum hemispheric lobule V +synonym: "anterior quadrangular lobule" RELATED [NLXANAT:20081205] +synonym: "culmen lobule (hV)" RELATED [NLXANAT:20081205] +synonym: "hemispheric lobule V" EXACT [NLXANAT:20081205] +synonym: "lobule H V of Larsell" EXACT [FMA:278723] +synonym: "lobule V of cerebellar hemisphere" EXACT [FMA:278723] +synonym: "lobulus anterior" RELATED [NLXANAT:20081205] +synonym: "lobulus quadrangularis anterior" RELATED [NLXANAT:20081205] +synonym: "quadrangular lobule" RELATED [NLXANAT:20081205] +xref: FMA:278723 +xref: NLXANAT:20081205 +is_a: UBERON:0004003 {source="NIFSTD"} ! cerebellum hemisphere lobule +is_a: UBERON:0014647 ! hemisphere part of cerebellar anterior lobe + +[Term] +id: UBERON:0024003 +name: cerebellum hemispheric lobule VII +synonym: "hemispheric lobule VII" EXACT [NLXANAT:20081207] +xref: NLXANAT:20081207 +is_a: UBERON:0004003 {source="NIFSTD"} ! cerebellum hemisphere lobule + +[Term] +id: UBERON:0024009 +name: cerebellum hemispheric lobule X +synonym: "flocculus" RELATED [NLXANAT:20081213] +synonym: "hemispheric lobule X" EXACT [NLXANAT:20081213] +xref: NLXANAT:20081213 +is_a: UBERON:0004003 {source="NIFSTD"} ! cerebellum hemisphere lobule +is_a: UBERON:0027331 ! flocculonodular lobe, hemisphere portion + +[Term] +id: UBERON:0024037 +name: vermis of the flocculonodular lobe of the cerebellum +synonym: "flocculonodular vermis" EXACT [UBERON:cjm] +synonym: "vermis of the flocculonodular lobe of the cerebellum" EXACT HUMAN_PREFERRED [NLXANAT:20081241] +synonym: "vermis of the flocculonodular lobe of the cerebellum" EXACT [NLXANAT:20081241] +xref: NLXANAT:20081241 +is_a: UBERON:0004720 {source="NIFSTD"} ! cerebellar vermis + +[Term] +id: UBERON:0024043 +name: rostral portion of the medial accessory olive +synonym: "rostral portion of the medial accessory olive" EXACT [NLXANAT:20081247] +synonym: "rostral portion of the medial accessory olive" EXACT HUMAN_PREFERRED [NLXANAT:20081247] +xref: NLXANAT:20081247 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002127 {source="NIFSTD"} ! inferior olivary complex + +[Term] +id: UBERON:0024045 +name: white matter of the cerebellar cortex +def: "White matter that lies deep to the granular cell layer of the cerebellar cortex. It contains afferents to the cerebellar cortex and axons that run between the cerebellar cortex and the deep cerebellar nuclei." [NLXANAT:20081249] +synonym: "white matter of the cerebellar cortex" EXACT HUMAN_PREFERRED [NLXANAT:20081249] +synonym: "white matter of the cerebellar cortex" EXACT [NLXANAT:20081249] +xref: NLXANAT:20081249 +is_a: UBERON:0019291 ! white matter of metencephalon +intersection_of: UBERON:0002316 ! white matter +intersection_of: part_of UBERON:0002129 ! cerebellar cortex +relationship: part_of UBERON:0002129 ! cerebellar cortex + +[Term] +id: UBERON:0024046 +name: superficial feature part of the cerebellum +synonym: "superficial feature part of the cerebellum" EXACT HUMAN_PREFERRED [NLXANAT:20081250] +synonym: "superficial feature part of the cerebellum" EXACT [NLXANAT:20081250] +xref: NLXANAT:20081250 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002037 ! cerebellum + +[Term] +id: UBERON:0024065 +name: obsolete regional part of spinal nerve +synonym: "regional part of spinal nerve" EXACT HUMAN_PREFERRED [NLXANAT:20090206] +synonym: "regional part of spinal nerve" EXACT [NLXANAT:20090206] +is_obsolete: true +consider: NLXANAT:20090206 + +[Term] +id: UBERON:0024073 +name: obsolete regional part of nucleus accumbens +synonym: "regional part of nucleus accumbens" EXACT [NLXANAT:20090305] +is_obsolete: true +consider: NLXANAT:20090305 + +[Term] +id: UBERON:0024078 +name: principal anterior division of supraoptic nucleus +def: "One of two divisions of the supraoptic nucleus observed in mammals, formed by the ascension of the optic chiasm to split the nucleus in two. The principal anterior division consists of a dense cluster of large cells that stain darkly in Nissl preparations adjacent to the optic chiasm, extending as far rostrally to the organum vasculosum of the lamina terminalis and caudally into the posterior hypothalamus." [NLXANAT:20090310] +synonym: "principal anterior division of supraoptic nucleus" EXACT [NLXANAT:20090310] +xref: NLXANAT:20090310 +is_a: UBERON:0002616 ! regional part of brain + +[Term] +id: UBERON:0024079 +name: tuberal supraoptic nucleus +def: "Posterior division of the supraoptic nucleus, formed by the ascension of the optic tract splitting the nucleus into two regions. The tuberal SON lies along the posterior tuber cinereum of the hypothalamus. In some species, some neurons lie under the optic chiasm." [NLXANAT:20090311] +synonym: "retrochiasmatic subdivision" RELATED [NLXANAT:20090311] +synonym: "tuberal supraoptic nucleus" EXACT [NLXANAT:20090311] +xref: NLXANAT:20090311 +is_a: UBERON:0006568 ! hypothalamic nucleus +relationship: part_of UBERON:0001929 {source="NIFSTD"} ! supraoptic nucleus + +[Term] +id: UBERON:0024081 +name: obsolete regional part of stratum lucidum +synonym: "regional part of stratum lucidum" EXACT [NLXANAT:20090401] +is_obsolete: true +consider: NLXANAT:20090401 + +[Term] +id: UBERON:0024086 +name: obsolete cytoarchitectural part of dorsal tegmental nucleus +synonym: "cytoarchitectural part of dorsal tegmental nucleus" EXACT [NLXANAT:20090406] +is_obsolete: true +consider: NLXANAT:20090406 + +[Term] +id: UBERON:0024090 +name: chemoarchitectural part of brain +def: "Regional part of an anatomical region that is revealed by the use of a stain that reveals chemoarchitecture." [NLXANAT:20090501] +synonym: "chemoarchitectural part" EXACT [NLXANAT:20090501] +xref: NLXANAT:20090501 +is_a: UBERON:0002616 ! regional part of brain + +[Term] +id: UBERON:0024110 +name: basis pontis +def: "The basis pontis is the anterior portion of the pons." [http://en.wikipedia.org/wiki/Basilar_part_of_pons] +synonym: "basis pontis" EXACT HUMAN_PREFERRED [NLXANAT:20090704] +synonym: "basis pontis" EXACT [NLXANAT:20090704] +xref: http://en.wikipedia.org/wiki/Basilar_part_of_pons +xref: NLXANAT:20090704 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000988 {source="NIFSTD"} ! pons + +[Term] +id: UBERON:0024125 +name: obsolete regional part of adenohypophysis +synonym: "regional part of adenohypophysis" EXACT [BIRNLEX:1004] +synonym: "regional part of adenohypophysis" EXACT HUMAN_PREFERRED [BIRNLEX:1004] +is_obsolete: true +consider: BIRNLEX:1004 + +[Term] +id: UBERON:0024151 +name: tegmentum +def: "The ventral topographic division of the midbrain; the dorsal topographic division is the tectum. Meckel (1817; see English translation, 1832, vol. 2, p. 467) apparently introduced the term and roughly its definition here for macrodissected adult humans, except he excluded the cerebral peduncle (Tarin, 1753), a white matter tract at the base of the midbrain, which is still common today but is included here. As defined here, tegmentum refers to the whole of the midbrain (Baer, 1837) excluding the tectum but including the pretectal region (Scalia, 1972); see Swanson (2000, pp. 522, 526). Usage of this term is very complex, inconsistent, and illogical; see for example Crosby et al. (1962, pp. 221, 260, 262), Carpenter (1976, p. 367 ff.)." [BIRNLEX:1031] +synonym: "tegmentum" EXACT HUMAN_PREFERRED [BIRNLEX:1031] +synonym: "tegmentum" EXACT [BIRNLEX:1031] +xref: BIRNLEX:1031 +xref: http://en.wikipedia.org/wiki/Tegmentum +is_a: UBERON:0022776 {source="NIFSTD"} ! composite part spanning multiple base regional parts of brain + +[Term] +id: UBERON:0024161 +name: obsolete regional part of pontine tegmentum +synonym: "regional part of pontine tegmentum" EXACT HUMAN_PREFERRED [BIRNLEX:1041] +synonym: "regional part of pontine tegmentum" EXACT [BIRNLEX:1041] +is_obsolete: true +consider: BIRNLEX:1041 + +[Term] +id: UBERON:0024173 +name: obsolete regional part of inner ear +synonym: "regional part of inner ear" EXACT HUMAN_PREFERRED [BIRNLEX:1053] +synonym: "regional part of inner ear" EXACT [BIRNLEX:1053] +is_obsolete: true +consider: BIRNLEX:1053 + +[Term] +id: UBERON:0024177 +name: obsolete regional part orbital frontal cortex +synonym: "regional part orbital frontal cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1058] +synonym: "regional part orbital frontal cortex" EXACT [BIRNLEX:1058] +is_obsolete: true +consider: BIRNLEX:1058 + +[Term] +id: UBERON:0024182 +name: obsolete superficial feature part of cerebral cortex +synonym: "superficial feature part of cerebral cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1063] +synonym: "superficial feature part of cerebral cortex" EXACT [BIRNLEX:1063] +is_obsolete: true +consider: BIRNLEX:1063 + +[Term] +id: UBERON:0024183 +name: inferior transverse frontopolar gyrus +synonym: "inferior transverse frontopolar gyrus" EXACT [BIRNLEX:1064] +synonym: "inferior transverse frontopolar gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1064] +xref: BIRNLEX:1064 +xref: FMA:274414 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=842 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0022730 {source="NIFSTD"} ! transverse frontopolar gyri complex + +[Term] +id: UBERON:0024193 +name: medial transverse frontopolar gyrus +synonym: "medial transverse frontopolar gyrus" EXACT [BIRNLEX:1074] +synonym: "medial transverse frontopolar gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1074] +xref: BIRNLEX:1074 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=823 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0022730 {source="NIFSTD"} ! transverse frontopolar gyri complex + +[Term] +id: UBERON:0024201 +name: superior transverse frontopolar gyrus +synonym: "superior transverse frontopolar gyrus" EXACT [BIRNLEX:1082] +synonym: "superior transverse frontopolar gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1082] +xref: BIRNLEX:1082 +xref: FMA:274408 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0022730 {source="NIFSTD"} ! transverse frontopolar gyri complex + +[Term] +id: UBERON:0024211 +name: obsolete predominantly white regional part of cerebellar cortex +synonym: "predominantly white regional part of cerebellar cortex" EXACT [BIRNLEX:1092] +synonym: "predominantly white regional part of cerebellar cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1092] +is_obsolete: true +consider: BIRNLEX:1092 + +[Term] +id: UBERON:0024212 +name: obsolete predominantly gray regional part of frontal lobe +synonym: "predominantly gray regional part of frontal lobe" EXACT [BIRNLEX:1093] +is_obsolete: true +consider: BIRNLEX:1093 +consider: UBERON:0001870 + +[Term] +id: UBERON:0024234 +name: obsolete regional part of deep cerebellar nuclear complex +synonym: "regional part of deep cerebellar nuclear complex" EXACT [BIRNLEX:1114] +synonym: "regional part of deep cerebellar nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:1114] +is_obsolete: true +consider: BIRNLEX:1114 + +[Term] +id: UBERON:0024254 +name: obsolete regional part of autonomic nervous system +synonym: "regional part of autonomic nervous system" EXACT [BIRNLEX:1134] +synonym: "regional part of autonomic nervous system" EXACT HUMAN_PREFERRED [BIRNLEX:1134] +is_obsolete: true +consider: BIRNLEX:1134 + +[Term] +id: UBERON:0024285 +name: obsolete regional part of basal part of pons +synonym: "regional part of basal part of pons" EXACT [BIRNLEX:1168] +synonym: "regional part of basal part of pons" EXACT HUMAN_PREFERRED [BIRNLEX:1168] +is_obsolete: true +consider: BIRNLEX:1168 + +[Term] +id: UBERON:0024314 +name: obsolete predominantly gray regional part of parietal lobe +synonym: "predominantly gray regional part of parietal lobe" EXACT [BIRNLEX:1198] +is_obsolete: true +consider: BIRNLEX:1198 +consider: UBERON:0016530 + +[Term] +id: UBERON:0024326 +name: obsolete predominantly gray regional part of anterior hypothalamic region +synonym: "predominantly gray regional part of anterior hypothalamic region" EXACT HUMAN_PREFERRED [BIRNLEX:1210] +synonym: "predominantly gray regional part of anterior hypothalamic region" EXACT [BIRNLEX:1210] +is_obsolete: true +consider: BIRNLEX:1210 + +[Term] +id: UBERON:0024329 +name: obsolete predominantly white regional part of cerebral peduncle +synonym: "predominantly white regional part of cerebral peduncle" EXACT [BIRNLEX:1213] +synonym: "predominantly white regional part of cerebral peduncle" EXACT HUMAN_PREFERRED [BIRNLEX:1213] +is_obsolete: true +consider: BIRNLEX:1213 + +[Term] +id: UBERON:0024335 +name: obsolete predominantly white regional part of anterior hypothalamic region +synonym: "predominantly white regional part of anterior hypothalamic region" EXACT HUMAN_PREFERRED [BIRNLEX:1219] +synonym: "predominantly white regional part of anterior hypothalamic region" EXACT [BIRNLEX:1219] +is_obsolete: true +consider: BIRNLEX:1219 + +[Term] +id: UBERON:0024347 +name: obsolete regional part of orbital gyri complex +synonym: "regional part of orbital gyri complex" EXACT [BIRNLEX:1231] +synonym: "regional part of orbital gyri complex" EXACT HUMAN_PREFERRED [BIRNLEX:1231] +is_obsolete: true +consider: BIRNLEX:1231 + +[Term] +id: UBERON:0024381 +name: obsolete regional part of transverse frontopolar gyri complex +synonym: "regional part of transverse frontopolar gyri complex" EXACT [BIRNLEX:1265] +synonym: "regional part of transverse frontopolar gyri complex" EXACT HUMAN_PREFERRED [BIRNLEX:1265] +is_obsolete: true +consider: BIRNLEX:1265 + +[Term] +id: UBERON:0024382 +name: ventral nerve root of lumbar spinal cord +synonym: "anterior nerve root of lumbar spinal cord" RELATED [BIRNLEX:1266] +synonym: "ventral nerve root of lumbar spinal cord" EXACT [BIRNLEX:1266] +synonym: "ventral nerve root of lumbar spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1266] +xref: BIRNLEX:1266 +is_a: UBERON:0009631 {source="NIFSTD"} ! root of lumbar spinal nerve +disjoint_from: UBERON:0026006 {source="NIFSTD"} ! dorsal nerve root of lumbar spinal cord + +[Term] +id: UBERON:0024394 +name: obsolete regional part of Parahippocampal gyrus +synonym: "regional part of parahippocampal gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1278] +synonym: "regional part of parahippocampal gyrus" EXACT [BIRNLEX:1278] +is_obsolete: true +consider: BIRNLEX:1278 + +[Term] +id: UBERON:0024397 +name: obsolete regional part of tuberomammillary nucleus +synonym: "regional part of tuberomammillary nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1281] +synonym: "regional part of tuberomammillary nucleus" EXACT [BIRNLEX:1281] +is_obsolete: true +consider: BIRNLEX:1281 + +[Term] +id: UBERON:0024437 +name: obsolete predominantly gray regional part of medial mammillary nucleus +synonym: "predominantly gray regional part of medial mammillary nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1322] +synonym: "predominantly gray regional part of medial mammillary nucleus" EXACT [BIRNLEX:1322] +is_obsolete: true +consider: BIRNLEX:1322 + +[Term] +id: UBERON:0024439 +name: obsolete superficial feature part of frontal lobe +synonym: "superficial feature part of frontal lobe" EXACT [BIRNLEX:1324] +synonym: "superficial feature part of frontal lobe" EXACT HUMAN_PREFERRED [BIRNLEX:1324] +is_obsolete: true +consider: BIRNLEX:1324 + +[Term] +id: UBERON:0024449 +name: obsolete hemispheric parts of the cerebellar cortex +synonym: "hemispheric parts of the cerebellar cortex" EXACT [BIRNLEX:1334] +is_obsolete: true +consider: BIRNLEX:1334 +consider: UBERON:0002245 + +[Term] +id: UBERON:0024479 +name: obsolete regional part of inferior parietal cortex +synonym: "regional part of inferior parietal cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1364] +synonym: "regional part of inferior parietal cortex" EXACT [BIRNLEX:1364] +is_obsolete: true +consider: BIRNLEX:1364 + +[Term] +id: UBERON:0024501 +name: obsolete predominantly gray regional part of occipital lobe +synonym: "predominantly gray regional part of occipital lobe" EXACT [BIRNLEX:1386] +is_obsolete: true +consider: BIRNLEX:1386 +consider: UBERON:0016540 + +[Term] +id: UBERON:0024518 +name: obsolete regional part of neuraxis cavity +synonym: "regional part of neuraxis cavity" EXACT HUMAN_PREFERRED [BIRNLEX:1402] +synonym: "regional part of neuraxis cavity" EXACT [BIRNLEX:1402] +is_obsolete: true +consider: BIRNLEX:1402 + +[Term] +id: UBERON:0024524 +name: obsolete predominantly gray regional part of midbrain reticular formation +synonym: "predominantly gray regional part of midbrain reticular formation" EXACT HUMAN_PREFERRED [BIRNLEX:1408] +synonym: "predominantly gray regional part of midbrain reticular formation" EXACT [BIRNLEX:1408] +is_obsolete: true +consider: BIRNLEX:1408 + +[Term] +id: UBERON:0024528 +name: obsolete predominantly gray regional part of oculomotor nuclear complex +synonym: "predominantly gray regional part of oculomotor nuclear complex" EXACT [BIRNLEX:1412] +synonym: "predominantly gray regional part of oculomotor nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:1412] +is_obsolete: true +consider: BIRNLEX:1412 + +[Term] +id: UBERON:0024541 +name: obsolete predominantly gray regional part of red nucleus +synonym: "predominantly gray regional part of red nucleus" EXACT [BIRNLEX:1425] +synonym: "predominantly gray regional part of red nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1425] +is_obsolete: true +consider: BIRNLEX:1425 + +[Term] +id: UBERON:0024550 +name: obsolete predominantly white regional part of red nucleus +synonym: "predominantly white regional part of red nucleus" EXACT [BIRNLEX:1434] +synonym: "predominantly white regional part of red nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1434] +is_obsolete: true +consider: BIRNLEX:1434 + +[Term] +id: UBERON:0024559 +name: obsolete predominantly gray regional part of habenula +synonym: "predominantly gray regional part of habenula" EXACT [BIRNLEX:1443] +synonym: "predominantly gray regional part of habenula" EXACT HUMAN_PREFERRED [BIRNLEX:1443] +is_obsolete: true +consider: BIRNLEX:1443 + +[Term] +id: UBERON:0024621 +name: obsolete regional part of sacral spinal cord white matter +synonym: "regional part of sacral spinal cord white matter" EXACT [BIRNLEX:1506] +synonym: "regional part of sacral spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:1506] +is_obsolete: true +consider: BIRNLEX:1506 + +[Term] +id: UBERON:0024622 +name: obsolete predominantly gray regional part of basal nuclear complex +synonym: "predominantly gray regional part of basal nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:1507] +synonym: "predominantly gray regional part of basal nuclear complex" EXACT [BIRNLEX:1507] +is_obsolete: true +consider: BIRNLEX:1507 + +[Term] +id: UBERON:0024653 +name: obsolete superficial feature part of temporal lobe +synonym: "superficial feature part of temporal lobe" EXACT [BIRNLEX:1538] +synonym: "superficial feature part of temporal lobe" EXACT HUMAN_PREFERRED [BIRNLEX:1538] +is_obsolete: true +consider: BIRNLEX:1538 + +[Term] +id: UBERON:0024708 +name: obsolete superficial feature part of hypophysis +synonym: "superficial feature part of hypophysis" EXACT [BIRNLEX:1593] +synonym: "superficial feature part of hypophysis" EXACT HUMAN_PREFERRED [BIRNLEX:1593] +is_obsolete: true +consider: BIRNLEX:1593 + +[Term] +id: UBERON:0024714 +name: obsolete regional part of cingulate gyrus +synonym: "regional part of cingulate gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1599] +synonym: "regional part of cingulate gyrus" EXACT [BIRNLEX:1599] +is_obsolete: true +consider: BIRNLEX:1599 + +[Term] +id: UBERON:0024721 +name: obsolete regional part of outer ear +synonym: "regional part of outer ear" EXACT [BIRNLEX:1605] +synonym: "regional part of outer ear" EXACT HUMAN_PREFERRED [BIRNLEX:1605] +is_obsolete: true +consider: BIRNLEX:1605 + +[Term] +id: UBERON:0024749 +name: obsolete predominantly gray regional part of temporal lobe +synonym: "predominantly gray regional part of temporal lobe" EXACT HUMAN_PREFERRED [BIRNLEX:1633] +synonym: "predominantly gray regional part of temporal lobe" EXACT [BIRNLEX:1633] +is_obsolete: true +consider: BIRNLEX:1633 +consider: UBERON:0016538 + +[Term] +id: UBERON:0024762 +name: obsolete regional part of lumbar spinal cord white matter +synonym: "regional part of lumbar spinal cord white matter" EXACT [BIRNLEX:1647] +synonym: "regional part of lumbar spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:1647] +is_obsolete: true +consider: BIRNLEX:1647 + +[Term] +id: UBERON:0024793 +name: obsolete predominantly gray regional part of thalamus +synonym: "predominantly gray regional part of thalamus" EXACT [BIRNLEX:1679] +synonym: "predominantly gray regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1679] +is_obsolete: true +consider: BIRNLEX:1679 + +[Term] +id: UBERON:0024800 +name: obsolete predominantly white regional part of thalamus +synonym: "predominantly white regional part of thalamus" EXACT [BIRNLEX:1686] +synonym: "predominantly white regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1686] +is_obsolete: true +consider: BIRNLEX:1686 + +[Term] +id: UBERON:0024826 +name: obsolete regional part of middle ear +synonym: "regional part of middle ear" EXACT [BIRNLEX:1713] +synonym: "regional part of middle ear" EXACT HUMAN_PREFERRED [BIRNLEX:1713] +is_obsolete: true +consider: BIRNLEX:1713 + +[Term] +id: UBERON:0024828 +name: obsolete regional part of Preoptic area +synonym: "regional part of preoptic area" EXACT [BIRNLEX:1715] +synonym: "regional part of preoptic area" EXACT HUMAN_PREFERRED [BIRNLEX:1715] +is_obsolete: true +consider: BIRNLEX:1715 + +[Term] +id: UBERON:0024900 +name: left sub-lobar region +synonym: "left sub-lobar region" EXACT [BIRNLEX:1789] +synonym: "left sub-lobar region" EXACT HUMAN_PREFERRED [BIRNLEX:1789] +xref: BIRNLEX:1789 +is_a: UBERON:0023255 {source="NIFSTD"} ! sub-lobar region +relationship: located_in UBERON:0002812 {source="NIFSTD"} ! left cerebral hemisphere + +[Term] +id: UBERON:0024901 +name: right sub-lobar region +synonym: "right sub-lobar region" EXACT [BIRNLEX:1790] +synonym: "right sub-lobar region" EXACT HUMAN_PREFERRED [BIRNLEX:1790] +xref: BIRNLEX:1790 +is_a: UBERON:0023255 {source="NIFSTD"} ! sub-lobar region +relationship: located_in UBERON:0002813 {source="NIFSTD"} ! right cerebral hemisphere + +[Term] +id: UBERON:0024904 +name: obsolete regional part of retina +synonym: "regional part of retina" EXACT HUMAN_PREFERRED [BIRNLEX:1793] +synonym: "regional part of retina" EXACT [BIRNLEX:1793] +is_obsolete: true +consider: BIRNLEX:1793 + +[Term] +id: UBERON:0024907 +name: obsolete hemisphere parts of cerebral cortex +synonym: "cerebral hemisphere" RELATED [BIRNLEX:1796] +synonym: "hemisphere parts of cerebral cortex" EXACT [BIRNLEX:1796] +synonym: "hemisphere parts of cerebral cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1796] +is_obsolete: true +consider: BIRNLEX:1796 +consider: UBERON:0001869 + +[Term] +id: UBERON:0024914 +name: circuit part of central nervous system +def: "A collection of neuronal components interacting in a functional circuit. A neural circuit is bounded by the nervous sytem regions in which its participating neuronal components are contained (BB)." [BIRNLEX:2513] +synonym: "circuit part of central nervous system" EXACT [BIRNLEX:2513] +synonym: "circuit part of central nervous system" EXACT HUMAN_PREFERRED [BIRNLEX:2513] +xref: BIRNLEX:2513 +is_a: UBERON:0000073 ! regional part of nervous system +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001017 ! central nervous system + +[Term] +id: UBERON:0024940 +name: ganglion part of peripheral nervous system +def: "A spatially aggregated collection of nerve cell bodies in the PNS, consisting of one or more subpopulations that share cell type, chemical phenotype, and connections. (CUMBO)" [BIRNLEX:2548] +synonym: "ganglion part of peripheral nervous system" EXACT [BIRNLEX:2548] +synonym: "ganglion part of peripheral nervous system" EXACT HUMAN_PREFERRED [BIRNLEX:2548] +xref: BIRNLEX:2548 +is_a: UBERON:0000073 ! regional part of nervous system +relationship: part_of UBERON:0000010 ! peripheral nervous system + +[Term] +id: UBERON:0024946 +name: obsolete regional part of cochlear canal +synonym: "division of cochlear canal" RELATED [BIRNLEX:2554] +synonym: "regional part of cochlear canal" EXACT HUMAN_PREFERRED [BIRNLEX:2554] +synonym: "regional part of cochlear canal" EXACT [BIRNLEX:2554] +is_obsolete: true +consider: BIRNLEX:2554 +consider: UMLS:C0458763 + +[Term] +id: UBERON:0024952 +name: obsolete duct part of cochlear canal +synonym: "duct part of cochlear canal" EXACT [BIRNLEX:2560] +is_obsolete: true +consider: BIRNLEX:2560 +consider: UBERON:0001855 + +[Term] +id: UBERON:0024962 +name: obsolete predominantly gray part of ventral cochlear nucleus +synonym: "predominantly gray part of ventral cochlear nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:2571] +synonym: "predominantly gray part of ventral cochlear nucleus" EXACT [BIRNLEX:2571] +is_obsolete: true +consider: BIRNLEX:2571 + +[Term] +id: UBERON:0025033 +name: obsolete predominantly gray part of solitary nucleus +synonym: "predominantly gray part of solitary nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:2660] +synonym: "predominantly gray part of solitary nucleus" EXACT [BIRNLEX:2660] +is_obsolete: true +consider: BIRNLEX:2660 + +[Term] +id: UBERON:0025067 +name: obsolete regional part of corticomedial nuclear complex +synonym: "regional part of corticomedial nuclear complex" EXACT [BIRNLEX:2697] +synonym: "regional part of corticomedial nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:2697] +is_obsolete: true +consider: BIRNLEX:2697 + +[Term] +id: UBERON:0025078 +name: obsolete regional part of olfactory cortex +synonym: "regional part of olfactory cortex" EXACT [BIRNLEX:2708] +synonym: "regional part of olfactory cortex" EXACT HUMAN_PREFERRED [BIRNLEX:2708] +is_obsolete: true +consider: BIRNLEX:2708 + +[Term] +id: UBERON:0025096 +name: superior calcarine sulcus +synonym: "sulcus calcarinus superior" RELATED [BIRNLEX:4014] +synonym: "superior calcarine sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4014] +synonym: "superior calcarine sulcus" EXACT [BIRNLEX:4014] +synonym: "superior ramus of calcarine fissure" RELATED [BIRNLEX:4014] +synonym: "upper calcarine sulcus" RELATED [BIRNLEX:4014] +xref: BIRNLEX:4014 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=147 +xref: http://linkedlifedata.com/resource/umls/id/C0262333 +is_a: UBERON:0019303 ! occipital sulcus + +[Term] +id: UBERON:0025102 +name: inferior occipital sulcus +synonym: "inferior occipital sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4020] +synonym: "inferior occipital sulcus" EXACT [BIRNLEX:4020] +synonym: "sulcus occipitalis inferior" RELATED [BIRNLEX:4020] +xref: BIRNLEX:4020 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=144 +xref: http://linkedlifedata.com/resource/umls/id/C0262253 +is_a: UBERON:0019303 ! occipital sulcus + +[Term] +id: UBERON:0025103 +name: inferior calcarine sulcus +synonym: "inferior calcarine sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4021] +synonym: "inferior calcarine sulcus" EXACT [BIRNLEX:4021] +synonym: "inferior ramus of calcarine fissure" RELATED [BIRNLEX:4021] +synonym: "lower calcarine sulcus" RELATED [BIRNLEX:4021] +synonym: "sulcus calcarinus inferior" RELATED [BIRNLEX:4021] +xref: BIRNLEX:4021 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=148 +xref: http://linkedlifedata.com/resource/umls/id/C0262249 +is_a: UBERON:0019303 ! occipital sulcus + +[Term] +id: UBERON:0025104 +name: ectocalcarine sulcus +synonym: "ectocalcarine sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4022] +synonym: "ectocalcarine sulcus" EXACT [BIRNLEX:4022] +synonym: "external calcarine fissure" RELATED [BIRNLEX:4022] +synonym: "external calcarine sulcus" RELATED [BIRNLEX:4022] +synonym: "sulcus ectocalcarinus" RELATED [BIRNLEX:4022] +xref: BIRNLEX:4022 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=146 +xref: http://linkedlifedata.com/resource/umls/id/C0262230 +is_a: UBERON:0019303 ! occipital sulcus + +[Term] +id: UBERON:0025116 +name: obsolete superficial feature part of parietal cortex +synonym: "superficial feature part of parietal cortex" EXACT HUMAN_PREFERRED [BIRNLEX:4034] +synonym: "superficial feature part of parietal cortex" EXACT [BIRNLEX:4034] +is_obsolete: true +consider: BIRNLEX:4034 + +[Term] +id: UBERON:0025128 +name: obsolete regional part of longitudinal fissure +synonym: "regional part of longitudinal fissure" EXACT HUMAN_PREFERRED [BIRNLEX:4046] +synonym: "regional part of longitudinal fissure" EXACT [BIRNLEX:4046] +is_obsolete: true +consider: BIRNLEX:4046 + +[Term] +id: UBERON:0025147 +name: obsolete cytoarchitectural part of occipital lobe +synonym: "cytoarchitectural part of occipital lobe" EXACT HUMAN_PREFERRED [BIRNLEX:4065] +synonym: "cytoarchitectural part of occipital lobe" EXACT [BIRNLEX:4065] +is_obsolete: true +consider: BIRNLEX:4065 + +[Term] +id: UBERON:0025148 +name: obsolete cytoarchitectural part of frontal lobe +synonym: "cytoarchitectural part of frontal lobe" EXACT [BIRNLEX:4066] +synonym: "cytoarchitectural part of frontal lobe" EXACT HUMAN_PREFERRED [BIRNLEX:4066] +is_obsolete: true +consider: BIRNLEX:4066 + +[Term] +id: UBERON:0025182 +name: obsolete regional part of gustatory epithelium +alt_id: UBERON:0025487 +synonym: "regional part of gustatory epithelium" EXACT HUMAN_PREFERRED [BIRNLEX:4100] +synonym: "regional part of gustatory epithelium" EXACT [BIRNLEX:4100] +is_obsolete: true +consider: BIRNLEX:4100 +consider: http://uri.neuinfo.org/nif/nifstd/nifext_13 + +[Term] +id: UBERON:0025236 +name: obsolete regional part of cervical spinal cord white matter +synonym: "regional part of cervical spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:723] +synonym: "regional part of cervical spinal cord white matter" EXACT [BIRNLEX:723] +is_obsolete: true +consider: BIRNLEX:723 + +[Term] +id: UBERON:0025250 +name: obsolete predominantly white regional part of fornix +synonym: "predominantly white regional part of fornix" EXACT [BIRNLEX:738] +synonym: "predominantly white regional part of fornix" EXACT HUMAN_PREFERRED [BIRNLEX:738] +is_obsolete: true +consider: BIRNLEX:738 + +[Term] +id: UBERON:0025254 +name: obsolete regional part of anterior commissure +synonym: "regional part of anterior commissure" EXACT HUMAN_PREFERRED [BIRNLEX:742] +synonym: "regional part of anterior commissure" EXACT [BIRNLEX:742] +is_obsolete: true +consider: BIRNLEX:742 + +[Term] +id: UBERON:0025261 +name: thalamic fiber tract +synonym: "thalamic fiber tracts" EXACT [BIRNLEX:749] +synonym: "thalamic fiber tracts" EXACT HUMAN_PREFERRED [BIRNLEX:749] +xref: BIRNLEX:749 +is_a: UBERON:0011591 ! tract of diencephalon +intersection_of: UBERON:0001018 ! axon tract +intersection_of: part_of UBERON:0001897 ! dorsal plus ventral thalamus +relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus + +[Term] +id: UBERON:0025268 +name: obsolete regional part of hippocampal formation +synonym: "regional part of hippocampal formation" EXACT [BIRNLEX:757] +synonym: "regional part of hippocampal formation" EXACT HUMAN_PREFERRED [BIRNLEX:757] +is_obsolete: true +consider: BIRNLEX:757 + +[Term] +id: UBERON:0025284 +name: obsolete regional part of substantia nigra +synonym: "regional part of substantia nigra" EXACT HUMAN_PREFERRED [BIRNLEX:775] +synonym: "regional part of substantia nigra" EXACT [BIRNLEX:775] +is_obsolete: true +consider: BIRNLEX:775 + +[Term] +id: UBERON:0025327 +name: obsolete regional part of inferior frontal gyrus +synonym: "regional part of inferior frontal gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:821] +synonym: "regional part of inferior frontal gyrus" EXACT [BIRNLEX:821] +is_obsolete: true +consider: BIRNLEX:821 + +[Term] +id: UBERON:0025337 +name: obsolete predominantly gray regional part of limbic lobe +synonym: "predominantly gray regional part of limbic lobe" EXACT [BIRNLEX:831] +is_obsolete: true +consider: BIRNLEX:831 +consider: UBERON:0016542 + +[Term] +id: UBERON:0025338 +name: obsolete predominantly gray regional part of septal nuclear complex +synonym: "predominantly gray regional part of septal nuclear complex" EXACT [BIRNLEX:832] +synonym: "predominantly gray regional part of septal nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:832] +is_obsolete: true +consider: BIRNLEX:832 + +[Term] +id: UBERON:0025409 +name: obsolete regional part of neurohypophysis +synonym: "regional part of neurohypophysis" EXACT HUMAN_PREFERRED [BIRNLEX:921] +synonym: "regional part of neurohypophysis" EXACT [BIRNLEX:921] +is_obsolete: true +consider: BIRNLEX:921 + +[Term] +id: UBERON:0025418 +name: obsolete regional part of cingulate cortex +synonym: "regional part of cingulate cortex" EXACT HUMAN_PREFERRED [BIRNLEX:930] +synonym: "regional part of cingulate cortex" EXACT [BIRNLEX:930] +is_obsolete: true +consider: BIRNLEX:930 + +[Term] +id: UBERON:0025444 +name: obsolete regional part of cerebellar white matter +synonym: "regional part of cerebellar white matter" EXACT [BIRNLEX:959] +synonym: "regional part of cerebellar white matter" EXACT HUMAN_PREFERRED [BIRNLEX:959] +is_obsolete: true +consider: BIRNLEX:959 + +[Term] +id: UBERON:0025473 +name: obsolete regional part of thoracic spinal cord gray matter +synonym: "regional part of thoracic spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:989] +synonym: "regional part of thoracic spinal cord gray matter" EXACT [BIRNLEX:989] +is_obsolete: true +consider: BIRNLEX:989 + +[Term] +id: UBERON:0025525 +name: motor system +def: "The part of the central nervous system that is involved with movement." [http://en.wikipedia.org/wiki/Motor_system] +comment: It consists of the pyramidal and extrapyramidal system +synonym: "motor system" EXACT [NLXANAT:090805] +xref: NLXANAT:090805 +is_a: UBERON:0023879 {source="NIFSTD"} ! neural system + +[Term] +id: UBERON:0025533 +name: proprioceptive system +def: "The sensory system for the sense of proprioception." [NLXANAT:090814] +synonym: "proprioceptive system" EXACT [NLXANAT:090814] +xref: NLXANAT:090814 +is_a: UBERON:0023879 ! neural system + +[Term] +id: UBERON:0025534 +name: sensorimotor system +synonym: "sensorimotor" BROAD [NLXANAT:090815] +xref: NLXANAT:090815 +is_a: UBERON:0023879 {source="NIFSTD"} ! neural system + +[Term] +id: UBERON:0025581 +name: perirhinal cortex of primate of Burwell et al 1995 +def: "Cortical region near the rhinal sulcus in primate encompassing Brodmann's areas 35 and 36" [NLXANAT:1005014] +synonym: "perirhinal cortex of primate" RELATED [UBERON:cjm] +synonym: "perirhinal cortex of primate of burwell et al 1995" EXACT [NLXANAT:1005014] +synonym: "primate perirhinal cortex" RELATED [UBERON:cjm] +xref: NLXANAT:1005014 +is_a: UBERON:0023936 {source="NIFSTD"} ! perirhinal cortex of Burwell et al 1995 + +[Term] +id: UBERON:0025584 +name: perirhinal cortex of rodent of Burwell et al 1995 +def: "Cortical region surrounding the posterior rhinal sulcus in the rat, encompassing areas 35 and 36 in the rat. Rostraly, it abuts the posterior insular cortex" [NLXANAT:1005017] +synonym: "perirhinal cortex of rodent" RELATED [NLXANAT:1005017] +synonym: "perirhinal cortex of rodent of burwell et al 1995" EXACT [NLXANAT:1005017] +synonym: "rodent perirhinal cortex" RELATED [NLXANAT:1005017] +xref: NLXANAT:1005017 +is_a: UBERON:0023936 {source="NIFSTD"} ! perirhinal cortex of Burwell et al 1995 + +[Term] +id: UBERON:0025588 +name: histaminergic system +def: "any molecule, protein, cell, tissue or organ that is related to histamine." [NLXANAT:1005021] +synonym: "histaminergic system" EXACT [NLXANAT:1005021] +xref: NLXANAT:1005021 +is_a: UBERON:0023943 ! molecular system + +[Term] +id: UBERON:0025589 +name: catecholamine system +def: "any molecule, protein, cell, tissue or organ that is related to the catecholamines." [NLXANAT:1005022] +synonym: "catecholamine system" EXACT [NLXANAT:1005022] +synonym: "catecholaminergic system" RELATED [NLXANAT:1005022] +xref: NLXANAT:1005022 +is_a: UBERON:0023943 ! molecular system + +[Term] +id: UBERON:0025591 +name: gABAergic system +def: "any molecule, protein, cell, tissue or organ that is related to GABA." [NLXANAT:1005024] +synonym: "gabaergic system" EXACT [NLXANAT:1005024] +xref: NLXANAT:1005024 +is_a: UBERON:0023943 ! molecular system + +[Term] +id: UBERON:0025592 +name: glutamatergic system +def: "any molecule, protein, cell, tissue or organ that is related to glutamate (when in the role of a neurotransmitter)." [NLXANAT:1005025] +synonym: "glutamatergic system" EXACT [NLXANAT:1005025] +xref: NLXANAT:1005025 +is_a: UBERON:0023943 ! molecular system + +[Term] +id: UBERON:0025593 +name: serotonergic system +def: "any molecule, protein, cell, tissue or organ that is related to serotonin." [NLXANAT:1005026] +synonym: "5-ht system" RELATED [NLXANAT:1005026] +synonym: "5ht system" RELATED [NLXANAT:1005026] +synonym: "serotonergic system" EXACT [NLXANAT:1005026] +synonym: "serotonin system" RELATED [NLXANAT:1005026] +xref: NLXANAT:1005026 +is_a: UBERON:0023943 ! molecular system + +[Term] +id: UBERON:0025595 +name: cholinergic system +def: "any molecule, protein, cell, tissue or organ that is related to acetylcholine." [NLXANAT:1005028] +synonym: "acetylcholine system" RELATED [NLXANAT:1005028] +synonym: "ach system" RELATED [NLXANAT:1005028] +synonym: "cholinergic system" EXACT [NLXANAT:1005028] +xref: NLXANAT:1005028 +is_a: UBERON:0023943 ! molecular system + +[Term] +id: UBERON:0025619 +name: obsolete part of neuraxis +def: "Part of brain and spinal cord excluding retina." [NLXANAT:1010010] +synonym: "part of neuraxis" EXACT [NLXANAT:1010010] +is_obsolete: true +consider: NLXANAT:1010010 + +[Term] +id: UBERON:0025677 +name: paravermis parts of the cerebellar cortex +synonym: "paravermis parts of the cerebellar cortex" EXACT [NLXANAT:20081237] +synonym: "paravermis parts of the cerebellar cortex" EXACT HUMAN_PREFERRED [NLXANAT:20081237] +synonym: "pars intermedia" RELATED [NLXANAT:20081237] +xref: NLXANAT:20081237 +is_a: UBERON:0002749 ! regional part of cerebellar cortex +relationship: part_of UBERON:0004006 {source="cjm"} ! cerebellum intermediate zone + +[Term] +id: UBERON:0025736 +name: chemoarchitectural part of striatum +synonym: "chemoarchitectural part of neostriatum" EXACT [NLXANAT:20090502] +xref: NLXANAT:20090502 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0024090 ! chemoarchitectural part of brain +intersection_of: UBERON:0024090 ! chemoarchitectural part of brain +intersection_of: part_of UBERON:0002435 ! striatum +relationship: part_of UBERON:0002435 ! striatum + +[Term] +id: UBERON:0025744 +name: obsolete regional part of dorsal cochlear nucleus +synonym: "regional part of dorsal cochlear nucleus" EXACT [NLXANAT:20090510] +is_obsolete: true +consider: NLXANAT:20090510 + +[Term] +id: UBERON:0025763 +name: rostral sulcus +synonym: "rostral sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1012] +synonym: "rostral sulcus" EXACT [BIRNLEX:1012] +xref: BIRNLEX:1012 +xref: http://linkedlifedata.com/resource/umls/id/C0262327 +is_a: UBERON:0013118 ! sulcus of brain +relationship: part_of UBERON:0016525 ! frontal lobe + +[Term] +id: UBERON:0025764 +name: obsolete predominantly gray regional part of adenohypophysis +synonym: "predominantly gray regional part of adenohypophysis" EXACT [BIRNLEX:1013] +synonym: "predominantly gray regional part of adenohypophysis" EXACT HUMAN_PREFERRED [BIRNLEX:1013] +is_obsolete: true +consider: BIRNLEX:1013 + +[Term] +id: UBERON:0025768 +name: posterior middle temporal sulcus +synonym: "posterior middle temporal sulcus" EXACT [BIRNLEX:1017] +synonym: "posterior middle temporal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1017] +xref: BIRNLEX:1017 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=133 +xref: http://linkedlifedata.com/resource/umls/id/C0694594 +is_a: UBERON:0014687 ! temporal sulcus +disjoint_from: UBERON:0027113 {source="lexical"} ! anterior middle temporal sulcus + +[Term] +id: UBERON:0025772 +name: spur of arcuate sulcus +synonym: "spur of arcuate sulcus" EXACT [BIRNLEX:1021] +synonym: "spur of arcuate sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1021] +xref: BIRNLEX:1021 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=830 +is_a: UBERON:0013118 ! sulcus of brain +relationship: part_of UBERON:0034671 ! arcuate sulcus + +[Term] +id: UBERON:0025778 +name: obsolete predominantly white regional part of basal part of pons +synonym: "predominantly white regional part of basal part of pons" EXACT [BIRNLEX:1027] +synonym: "predominantly white regional part of basal part of pons" EXACT HUMAN_PREFERRED [BIRNLEX:1027] +is_obsolete: true +consider: BIRNLEX:1027 + +[Term] +id: UBERON:0025811 +name: obsolete predominantly gray regional part of pontine tegmentum +synonym: "predominantly gray regional part of pontine tegmentum" EXACT HUMAN_PREFERRED [BIRNLEX:1061] +synonym: "predominantly gray regional part of pontine tegmentum" EXACT [BIRNLEX:1061] +is_obsolete: true +consider: BIRNLEX:1061 + +[Term] +id: UBERON:0025827 +name: obsolete regional part of pontine reticular formation +synonym: "regional part of pontine reticular formation" EXACT [BIRNLEX:1077] +synonym: "regional part of pontine reticular formation" EXACT HUMAN_PREFERRED [BIRNLEX:1077] +is_obsolete: true +consider: BIRNLEX:1077 + +[Term] +id: UBERON:0025828 +name: obsolete regional part of superior olivary complex +synonym: "regional part of superior olivary complex" EXACT [BIRNLEX:1078] +synonym: "regional part of superior olivary complex" EXACT HUMAN_PREFERRED [BIRNLEX:1078] +is_obsolete: true +consider: BIRNLEX:1078 + +[Term] +id: UBERON:0025829 +name: anterior parieto-occipital sulcus +synonym: "anterior parieto-occipital sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1079] +synonym: "anterior parieto-occipital sulcus" EXACT [BIRNLEX:1079] +synonym: "medial parieto-occipital fissure" RELATED [BIRNLEX:1079] +synonym: "sulcus parieto-occipitalis anterior" RELATED [BIRNLEX:1079] +xref: BIRNLEX:1079 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=53 +xref: http://linkedlifedata.com/resource/umls/id/C0262195 +is_a: UBERON:0013118 ! sulcus of brain +relationship: part_of UBERON:0002695 ! parieto-occipital sulcus + +[Term] +id: UBERON:0025848 +name: obsolete regional part of anterior nucleus of hypothalamus +synonym: "regional part of anterior nucleus of hypothalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1098] +synonym: "regional part of anterior nucleus of hypothalamus" EXACT [BIRNLEX:1098] +is_obsolete: true +consider: BIRNLEX:1098 + +[Term] +id: UBERON:0025883 +name: superior ramus of arcuate sulcus +synonym: "superior ramus of arcuate sulcus" EXACT [BIRNLEX:1132] +synonym: "superior ramus of arcuate sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1132] +xref: BIRNLEX:1132 +xref: http://linkedlifedata.com/resource/umls/id/C0262339 +is_a: UBERON:0013118 ! sulcus of brain +relationship: part_of UBERON:0034671 ! arcuate sulcus + +[Term] +id: UBERON:0025897 +name: obsolete regional part of dentate gyrus +synonym: "regional part of dentate gyrus" EXACT [BIRNLEX:1147] +synonym: "regional part of dentate gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1147] +is_obsolete: true +consider: BIRNLEX:1147 + +[Term] +id: UBERON:0025899 +name: obsolete predominantly white regional part of hippocampal formation +synonym: "predominantly white regional part of hippocampal formation" EXACT HUMAN_PREFERRED [BIRNLEX:1149] +synonym: "predominantly white regional part of hippocampal formation" EXACT [BIRNLEX:1149] +is_obsolete: true +consider: BIRNLEX:1149 + +[Term] +id: UBERON:0025903 +name: principal sulcus +def: "Sulcus in the frontal lobe of the macaque. (Brain Info)" [BIRNLEX:1154] +synonym: "principal sulcus" EXACT [BIRNLEX:1154] +synonym: "principal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1154] +xref: BIRNLEX:1154 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=66 +xref: http://linkedlifedata.com/resource/umls/id/C0262323 +is_a: UBERON:0013118 ! sulcus of brain +relationship: part_of UBERON:0016525 ! frontal lobe + +[Term] +id: UBERON:0025927 +name: obsolete regional part of enteric nervous system +synonym: "regional part of enteric nervous system" EXACT HUMAN_PREFERRED [BIRNLEX:1179] +synonym: "regional part of enteric nervous system" EXACT [BIRNLEX:1179] +is_obsolete: true +consider: BIRNLEX:1179 + +[Term] +id: UBERON:0025928 +name: obsolete predominantly gray regional part of basal part of pons +synonym: "predominantly gray regional part of basal part of pons" EXACT [BIRNLEX:1180] +synonym: "predominantly gray regional part of basal part of pons" EXACT HUMAN_PREFERRED [BIRNLEX:1180] +is_obsolete: true +consider: BIRNLEX:1180 + +[Term] +id: UBERON:0025930 +name: obsolete regional part of dentate nucleus +synonym: "regional part of dentate nucleus" EXACT [BIRNLEX:1182] +synonym: "regional part of dentate nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1182] +is_obsolete: true +consider: BIRNLEX:1182 + +[Term] +id: UBERON:0025934 +name: obsolete regional part of hippocampus proper +synonym: "regional part of hippocampus proper" EXACT HUMAN_PREFERRED [BIRNLEX:1186] +synonym: "regional part of hippocampus proper" EXACT [BIRNLEX:1186] +is_obsolete: true +consider: BIRNLEX:1186 + +[Term] +id: UBERON:0025983 +name: obsolete predominantly gray regional part of orbital gyri complex +synonym: "predominantly gray regional part of orbital gyri complex" EXACT HUMAN_PREFERRED [BIRNLEX:1236] +synonym: "predominantly gray regional part of orbital gyri complex" EXACT [BIRNLEX:1236] +is_obsolete: true +consider: BIRNLEX:1236 + +[Term] +id: UBERON:0025993 +name: obsolete predominantly gray medial regional part of thalamus +synonym: "predominantly gray medial regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1246] +synonym: "predominantly gray medial regional part of thalamus" EXACT [BIRNLEX:1246] +is_obsolete: true +consider: BIRNLEX:1246 + +[Term] +id: UBERON:0026000 +name: obsolete regional part of cerebral ventricular cavity +synonym: "regional part of cerebral ventricular cavity" EXACT [BIRNLEX:1253] +synonym: "regional part of cerebral ventricular cavity" EXACT HUMAN_PREFERRED [BIRNLEX:1253] +synonym: "ventricles of brain" RELATED [BIRNLEX:1253] +is_obsolete: true +consider: BIRNLEX:1253 + +[Term] +id: UBERON:0026001 +name: obsolete regional part of median eminence +synonym: "regional part of median eminence" EXACT [BIRNLEX:1254] +synonym: "regional part of median eminence" EXACT HUMAN_PREFERRED [BIRNLEX:1254] +is_obsolete: true +consider: BIRNLEX:1254 + +[Term] +id: UBERON:0026006 +name: dorsal nerve root of lumbar spinal cord +synonym: "dorsal nerve root of lumbar spinal cord" EXACT HUMAN_PREFERRED [BIRNLEX:1259] +synonym: "dorsal nerve root of lumbar spinal cord" EXACT [BIRNLEX:1259] +synonym: "posterior nerve root of lumbar spinal cord" RELATED [BIRNLEX:1259] +xref: BIRNLEX:1259 +is_a: UBERON:0009631 {source="NIFSTD"} ! root of lumbar spinal nerve + +[Term] +id: UBERON:0026020 +name: obsolete predominantly gray regional part of transverse frontopolar gyri complex +synonym: "predominantly gray regional part of transverse frontopolar gyri complex" EXACT HUMAN_PREFERRED [BIRNLEX:1273] +synonym: "predominantly gray regional part of transverse frontopolar gyri complex" EXACT [BIRNLEX:1273] +is_obsolete: true +consider: BIRNLEX:1273 + +[Term] +id: UBERON:0026032 +name: obsolete predominantly gray regional part of Parahippocampal gyrus +synonym: "predominantly gray regional part of parahippocampal gyrus" EXACT [BIRNLEX:1285] +synonym: "predominantly gray regional part of parahippocampal gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1285] +is_obsolete: true +consider: BIRNLEX:1285 + +[Term] +id: UBERON:0026040 +name: obsolete predominantly gray dorsal regional part of thalamus +synonym: "predominantly gray dorsal regional part of thalamus" EXACT [BIRNLEX:1293] +synonym: "predominantly gray dorsal regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1293] +is_obsolete: true +consider: BIRNLEX:1293 + +[Term] +id: UBERON:0026048 +name: obsolete predominantly white dorsal regional part of thalamus +synonym: "predominantly white dorsal regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1301] +synonym: "predominantly white dorsal regional part of thalamus" EXACT [BIRNLEX:1301] +is_obsolete: true +consider: BIRNLEX:1301 + +[Term] +id: UBERON:0026063 +name: obsolete regional part of middle frontal gyrus +synonym: "regional part of middle frontal gyrus" EXACT [BIRNLEX:1317] +synonym: "regional part of middle frontal gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1317] +is_obsolete: true +consider: BIRNLEX:1317 + +[Term] +id: UBERON:0026079 +name: obsolete regional part of suprachiasmatic nucleus +synonym: "regional part of paravsuprachiasmatic nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1333] +synonym: "regional part of suprachiasmatic nucleus" EXACT [BIRNLEX:1333] +is_obsolete: true +consider: BIRNLEX:1333 + +[Term] +id: UBERON:0026106 +name: obsolete superficial feature part of cerebral peduncle +synonym: "superficial feature part of cerebral peduncle" EXACT HUMAN_PREFERRED [BIRNLEX:1360] +synonym: "superficial feature part of cerebral peduncle" EXACT [BIRNLEX:1360] +is_obsolete: true +consider: BIRNLEX:1360 + +[Term] +id: UBERON:0026113 +name: obsolete regional part of neostriatum +synonym: "regional part of neostriatum" EXACT [BIRNLEX:1367] +synonym: "regional part of neostriatum" EXACT HUMAN_PREFERRED [BIRNLEX:1367] +is_obsolete: true +consider: BIRNLEX:1367 + +[Term] +id: UBERON:0026117 +name: obsolete predominantly Gray regional part of inferior parietal cortex +synonym: "predominantly gray regional part of inferior parietal cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1371] +synonym: "predominantly gray regional part of inferior parietal cortex" EXACT [BIRNLEX:1371] +is_obsolete: true +consider: BIRNLEX:1371 + +[Term] +id: UBERON:0026137 +name: annectant gyrus +synonym: "annectant gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1391] +synonym: "annectant gyrus" EXACT [BIRNLEX:1391] +xref: BIRNLEX:1391 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=153 +xref: http://linkedlifedata.com/resource/umls/id/C0694596 +is_a: UBERON:0014640 ! occipital gyrus + +[Term] +id: UBERON:0026153 +name: obsolete regional part of paraventricular nucleus of hypothalamus +synonym: "regional part of paraventricular nucleus of hypothalamus" EXACT [BIRNLEX:1406] +synonym: "regional part of paraventricular nucleus of hypothalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1406] +is_obsolete: true +consider: BIRNLEX:1406 + +[Term] +id: UBERON:0026246 +name: sacral spinal cord white matter +synonym: "sacral spinal cord white matter" EXACT [BIRNLEX:1500] +synonym: "sacral spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:1500] +xref: BIRNLEX:1500 +is_a: UBERON:0002318 ! white matter of spinal cord +intersection_of: UBERON:0002316 ! white matter +intersection_of: part_of UBERON:0005843 ! sacral spinal cord +disjoint_from: UBERON:0029503 {source="NIFSTD"} ! sacral spinal cord gray matter +relationship: part_of UBERON:0005843 ! sacral spinal cord + +[Term] +id: UBERON:0026270 +name: obsolete predominantly gray anterior regional part of thalamus +synonym: "predominantly gray anterior regional part of thalamus" EXACT [BIRNLEX:1524] +synonym: "predominantly gray anterior regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1524] +is_obsolete: true +consider: BIRNLEX:1524 + +[Term] +id: UBERON:0026271 +name: obsolete regional part of cervical spinal cord gray matter +synonym: "regional part of cervical spinal cord gray matter" EXACT [BIRNLEX:1525] +synonym: "regional part of cervical spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:1525] +is_obsolete: true +consider: BIRNLEX:1525 + +[Term] +id: UBERON:0026293 +name: thoracic spinal cord gray commissure +synonym: "thoracic spinal cord gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:1547] +synonym: "thoracic spinal cord gray commissure" EXACT [BIRNLEX:1547] +xref: BIRNLEX:1547 +is_a: UBERON:0014631 ! dorsal gray commissure of spinal cord +is_a: UBERON:0014636 ! thoracic spinal cord gray matter +intersection_of: UBERON:0014631 ! dorsal gray commissure of spinal cord +intersection_of: part_of UBERON:0003038 ! thoracic spinal cord + +[Term] +id: UBERON:0026296 +name: obsolete predominantly gray regional part of cingulate gyrus +synonym: "predominantly gray regional part of cingulate gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1550] +synonym: "predominantly gray regional part of cingulate gyrus" EXACT [BIRNLEX:1550] +is_obsolete: true +consider: BIRNLEX:1550 + +[Term] +id: UBERON:0026324 +name: obsolete regional part of transverse temporal cortex +synonym: "regional part of transverse temporal cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1578] +synonym: "regional part of transverse temporal cortex" EXACT [BIRNLEX:1578] +is_obsolete: true +consider: BIRNLEX:1578 + +[Term] +id: UBERON:0026382 +name: inferior ramus of arcuate sulcus +synonym: "inferior ramus of arcuate sulcus" EXACT [BIRNLEX:1635] +synonym: "inferior ramus of arcuate sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1635] +xref: BIRNLEX:1635 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=65 +xref: http://linkedlifedata.com/resource/umls/id/C0262258 +is_a: UBERON:0013118 ! sulcus of brain +relationship: part_of UBERON:0034671 ! arcuate sulcus + +[Term] +id: UBERON:0026384 +name: lateral orbital sulcus +synonym: "lateral orbital sulcus" EXACT [BIRNLEX:1637] +synonym: "lateral orbital sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1637] +xref: BIRNLEX:1637 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=81 +is_a: UBERON:0013118 ! sulcus of brain +disjoint_from: UBERON:0026391 {source="lexical"} ! medial orbital sulcus +relationship: part_of UBERON:0016525 ! frontal lobe + +[Term] +id: UBERON:0026386 +name: lumbar spinal cord white matter +synonym: "lumbar spinal cord white matter" EXACT [BIRNLEX:1639] +synonym: "lumbar spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:1639] +xref: BIRNLEX:1639 +is_a: UBERON:0002318 ! white matter of spinal cord +intersection_of: UBERON:0002316 ! white matter +intersection_of: part_of UBERON:0002792 ! lumbar spinal cord +disjoint_from: UBERON:0029636 {source="NIFSTD"} ! lumbar spinal cord gray matter +relationship: part_of UBERON:0002792 ! lumbar spinal cord + +[Term] +id: UBERON:0026391 +name: medial orbital sulcus +synonym: "medial orbital sulcus" EXACT [BIRNLEX:1644] +synonym: "medial orbital sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1644] +xref: BIRNLEX:1644 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=82 +is_a: UBERON:0013118 ! sulcus of brain +relationship: part_of UBERON:0016525 ! frontal lobe + +[Term] +id: UBERON:0026445 +name: obsolete predominantly gray ventral regional part of thalamus +synonym: "predominantly gray ventral regional part of thalamus" EXACT [BIRNLEX:1701] +synonym: "predominantly gray ventral regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1701] +is_obsolete: true +consider: BIRNLEX:1701 + +[Term] +id: UBERON:0026456 +name: obsolete predominantly gray posterior regional part of thalamus +synonym: "predominantly gray posterior regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1712] +synonym: "predominantly gray posterior regional part of thalamus" EXACT [BIRNLEX:1712] +is_obsolete: true +consider: BIRNLEX:1712 + +[Term] +id: UBERON:0026536 +name: obsolete regional part of cochlea +synonym: "regional part of cochlea" EXACT [BIRNLEX:1794] +synonym: "regional part of cochlea" EXACT HUMAN_PREFERRED [BIRNLEX:1794] +is_obsolete: true +consider: BIRNLEX:1794 +consider: UMLS:C0931696 + +[Term] +id: UBERON:0026541 +name: dorsomedial subnucleus of solitary tract +synonym: "dorsomedial subnucleus of solitary tract" EXACT [BIRNLEX:1799] +synonym: "dorsomedial subnucleus of solitary tract" EXACT HUMAN_PREFERRED [BIRNLEX:1799] +synonym: "nucleus of the solitary tract, dorsomedial part" RELATED [BIRNLEX:1799] +xref: BIRNLEX:1799 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=744 +xref: http://linkedlifedata.com/resource/umls/id/C0175520 +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: part_of UBERON:0009050 ! nucleus of solitary tract + +[Term] +id: UBERON:0026546 +name: principal neuronal circuit +def: "A neuronal circuit bearing a principal projection neuron whose axon extends beyond the region where its soma is located to synapse on the dendrites of cells in other regions of the nervous system (BB)." [BIRNLEX:2514] +synonym: "principal neuronal circuit" EXACT [BIRNLEX:2514] +synonym: "principal neuronal circuit" EXACT HUMAN_PREFERRED [BIRNLEX:2514] +xref: BIRNLEX:2514 +is_a: UBERON:0024914 {source="NIFSTD"} ! circuit part of central nervous system + +[Term] +id: UBERON:0026547 +name: intrinsic neuronal circuit +def: "A neuronal circuit where all the participating neurons are bounded within a defined and limited region of the nervous system.(BB)." [BIRNLEX:2515] +synonym: "intrinsic neuronal circuit" EXACT HUMAN_PREFERRED [BIRNLEX:2515] +synonym: "intrinsic neuronal circuit" EXACT [BIRNLEX:2515] +xref: BIRNLEX:2515 +is_a: UBERON:0024914 {source="NIFSTD"} ! circuit part of central nervous system + +[Term] +id: UBERON:0026564 +name: obsolete regional part of macula +synonym: "regional part of macula" EXACT [BIRNLEX:2541] +synonym: "regional part of macula" EXACT HUMAN_PREFERRED [BIRNLEX:2541] +is_obsolete: true +consider: BIRNLEX:2541 + +[Term] +id: UBERON:0026584 +name: tympanic canal +def: "A minute canal that passes from the petrous portion of the temporal bone between the jugular fossa and carotid canal to the floor of the tympanic cavity and transmits the tympanic branch of the glossopharyngeal nerve" [http://www.dictionary.com/browse/tympanic-canal] +synonym: "canaliculus tympanicus" EXACT LATIN [FMA:TA] +synonym: "jacobson's canaliculus" EXACT [FMA:56460] +synonym: "tympanic canal" EXACT HUMAN_PREFERRED [BIRNLEX:2561] +synonym: "tympanic canal" EXACT [BIRNLEX:2561] +synonym: "tympanic canaliculus" EXACT [FMA:56460, http://www.dictionary.com/browse/tympanic-canal] +xref: BIRNLEX:2561 +xref: FMA:56460 +is_a: UBERON:0013685 {source="FMA"} ! foramen of skull +relationship: channel_for UBERON:0036216 ! tympanic nerve + +[Term] +id: UBERON:0026586 +name: vestibular canal +def: "The division of the spiral canal of the cochlea lying above the spiral lamina and the vestibular membrane." [http://www.dictionary.com/browse/vestibular-canal] +synonym: "canaliculus vestibuli" EXACT LATIN [FMA:TA] +synonym: "vestibular canal" EXACT HUMAN_PREFERRED [BIRNLEX:2563] +synonym: "vestibular canal" EXACT [BIRNLEX:2563] +synonym: "vestibular canaliculus" EXACT [FMA:56451] +xref: BIRNLEX:2563 +xref: FMA:56451 +xref: http://www.snomedbrowser.com/Codes/Details/279736007 +is_a: UBERON:0013685 {source="FMA"} ! foramen of skull + +[Term] +id: UBERON:0026588 +name: obsolete regional part of cochlear duct +synonym: "division of cochlear canal" RELATED [BIRNLEX:2565] +synonym: "regional part of cochlear duct" EXACT [BIRNLEX:2565] +synonym: "regional part of cochlear duct" EXACT HUMAN_PREFERRED [BIRNLEX:2565] +is_obsolete: true +consider: BIRNLEX:2565 +consider: UMLS:C1186240 + +[Term] +id: UBERON:0026663 +name: dorsolateral subnucleus of solitary tract +synonym: "dorsolateral subnucleus of solitary tract" EXACT [BIRNLEX:2659] +synonym: "dorsolateral subnucleus of solitary tract" EXACT HUMAN_PREFERRED [BIRNLEX:2659] +synonym: "nucleus of the solitary tract, dorsolateral part" RELATED [BIRNLEX:2659] +xref: BIRNLEX:2659 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=743 +xref: http://linkedlifedata.com/resource/umls/id/C0175519 +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: part_of UBERON:0009050 ! nucleus of solitary tract + +[Term] +id: UBERON:0026666 +name: parvicellular subnucleus of solitary tract +synonym: "parvicellular subnucleus of solitary tract" EXACT [BIRNLEX:2663] +synonym: "parvicellular subnucleus of solitary tract" EXACT HUMAN_PREFERRED [BIRNLEX:2663] +xref: BIRNLEX:2663 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=746 +xref: http://linkedlifedata.com/resource/umls/id/C0175522 +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: part_of UBERON:0009050 ! nucleus of solitary tract + +[Term] +id: UBERON:0026686 +name: obsolete regional part of basolateral nuclear complex +synonym: "regional part of basolateral nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:2685] +synonym: "regional part of basolateral nuclear complex" EXACT [BIRNLEX:2685] +is_obsolete: true +consider: BIRNLEX:2685 + +[Term] +id: UBERON:0026700 +name: obsolete predominantly gray part of corticomedial nuclear complex +synonym: "predominantly gray part of corticomedial nuclear complex" EXACT [BIRNLEX:2699] +synonym: "predominantly gray part of corticomedial nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:2699] +is_obsolete: true +consider: BIRNLEX:2699 + +[Term] +id: UBERON:0026719 +name: intermediate frontal sulcus +synonym: "intermediate frontal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4006] +synonym: "intermediate frontal sulcus" EXACT [BIRNLEX:4006] +synonym: "sulcus frontalis intermedius" RELATED [BIRNLEX:4006] +xref: BIRNLEX:4006 +xref: http://linkedlifedata.com/resource/umls/id/C0228199 +is_a: UBERON:0013118 ! sulcus of brain +relationship: part_of UBERON:0016525 ! frontal lobe + +[Term] +id: UBERON:0026720 +name: obsolete regional part of posterior superior frontal sulcus +synonym: "regional part of posterior superior frontal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4007] +synonym: "regional part of posterior superior frontal sulcus" EXACT [BIRNLEX:4007] +is_obsolete: true +consider: BIRNLEX:4007 + +[Term] +id: UBERON:0026721 +name: medial precentral sulcus +def: "A superficial feature of the frontal lobe that extends from the dorsal surface onto the medial surface of the superior frontal gyrus (Ono-90). (NN)" [BIRNLEX:4008] +synonym: "medial precentral sulcus" EXACT [BIRNLEX:4008] +synonym: "medial precentral sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4008] +xref: BIRNLEX:4008 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1610 +is_a: UBERON:0013118 ! sulcus of brain +relationship: part_of UBERON:0016525 ! frontal lobe + +[Term] +id: UBERON:0026722 +name: transverse parietal sulcus +def: "A sulcus in the human parietal lobe that branches dorsally from the intraparietal sulcus (Savel'ev-96). (NN)" [BIRNLEX:4009] +synonym: "transverse parietal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4009] +synonym: "transverse parietal sulcus" EXACT [BIRNLEX:4009] +xref: BIRNLEX:4009 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2295 +is_a: UBERON:0035927 ! sulcus of parietal lobe + +[Term] +id: UBERON:0026723 +name: inferior parietal sulcus +synonym: "inferior parietal sulcus" EXACT [BIRNLEX:4010] +synonym: "inferior parietal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4010] +xref: BIRNLEX:4010 +is_a: UBERON:0035927 ! sulcus of parietal lobe + +[Term] +id: UBERON:0026724 +name: superior parietal sulcus +def: "A superficial feature of the parietal lobe that extends from the dorsal surface of the superior parietal lobule across the margin of the parietal lobe into the precuneus (Ono-90). (NN)" [BIRNLEX:4011] +synonym: "superior parietal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4011] +synonym: "superior parietal sulcus" EXACT [BIRNLEX:4011] +xref: BIRNLEX:4011 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1611 +is_a: UBERON:0035927 ! sulcus of parietal lobe + +[Term] +id: UBERON:0026725 +name: angular sulcus +def: "A superficial feature of the parietal lobe. It is the portion of the superior temporal sulcus that extends into the angular gyrus (Ono-90). (NN)" [BIRNLEX:4012] +synonym: "angular sulcus" EXACT [BIRNLEX:4012] +synonym: "angular sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4012] +xref: BIRNLEX:4012 +xref: HBA:9384 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2386 +is_a: UBERON:0014687 ! temporal sulcus +is_a: UBERON:0035927 ! sulcus of parietal lobe +relationship: part_of UBERON:0002686 {source="NIFSTD"} ! angular gyrus +relationship: part_of UBERON:0002734 {source="NIFSTD"} ! superior temporal sulcus + +[Term] +id: UBERON:0026760 +name: inferior sagittal sulcus +synonym: "inferior sagittal sulcus" EXACT [BIRNLEX:4047] +synonym: "inferior sagittal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4047] +xref: BIRNLEX:4047 +is_a: UBERON:0034968 ! sagittal sulcus + +[Term] +id: UBERON:0026761 +name: superior sagittal sulcus +synonym: "superior sagittal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4048] +synonym: "superior sagittal sulcus" EXACT [BIRNLEX:4048] +xref: BIRNLEX:4048 +is_a: UBERON:0034968 ! sagittal sulcus + +[Term] +id: UBERON:0026762 +name: obsolete regional part of calcarine sulcus +synonym: "regional part of calcarine sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:4049] +synonym: "regional part of calcarine sulcus" EXACT [BIRNLEX:4049] +is_obsolete: true +consider: BIRNLEX:4049 + +[Term] +id: UBERON:0026765 +name: Hadjikhani et al. (1998) visuotopic partition scheme region +synonym: "Hadjikhani et al. (1998) visuotopic partition scheme region" EXACT [BIRNLEX:4052] +synonym: "Hadjikhani et al. (1998) visuotopic partition scheme region" EXACT HUMAN_PREFERRED [BIRNLEX:4052] +synonym: "Hadjikhani visuotopic areas" RELATED [BIRNLEX:4052] +synonym: "Hadjikhani visuotopic parcellation scheme" RELATED [BIRNLEX:4052] +synonym: "Hadjikhani visuotopic partition scheme" RELATED [BIRNLEX:4052] +xref: BIRNLEX:4052 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002021 ! occipital lobe + +[Term] +id: UBERON:0026775 +name: Tootell and Hadjikhani (2001) LOC/LOP complex +def: "Cortical parcel in occipital cortex of human according to Tootell and Hadjikhani 2001 that is activated preferentially by more peripheral stimuli compared to the adjacent lateral occipital central parcel" [BIRNLEX:4062] +synonym: "tootell and Hadjikhani (2001) loc/lop complex" EXACT [BIRNLEX:4062] +synonym: "tootell and Hadjikhani (2001) loc/lop complex" EXACT HUMAN_PREFERRED [BIRNLEX:4062] +xref: BIRNLEX:4062 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002021 ! occipital lobe + +[Term] +id: UBERON:0026776 +name: Press, Brewer, Dougherty, Wade and Wandell (2001) visuotopic area V7 +synonym: "press, brewer, dougherty, wade and wandell (2001) visuotopic area v7" EXACT HUMAN_PREFERRED [BIRNLEX:4063] +synonym: "press, brewer, dougherty, wade and wandell (2001) visuotopic area v7" EXACT [BIRNLEX:4063] +xref: BIRNLEX:4063 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002021 ! occipital lobe + +[Term] +id: UBERON:0026777 +name: Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region +synonym: "ongur, price, and ferry (2003) prefrontal cortical areas" RELATED [BIRNLEX:4064] +synonym: "ongur, price, and ferry (2003) prefrontal cortical parcellation scheme" RELATED [BIRNLEX:4064] +synonym: "ongur, price, and ferry (2003) prefrontal cortical partition scheme" RELATED [BIRNLEX:4064] +synonym: "ongur, price, and ferry (2003) prefrontal cortical partition scheme region" EXACT HUMAN_PREFERRED [BIRNLEX:4064] +synonym: "ongur, price, and ferry (2003) prefrontal cortical partition scheme region" EXACT [BIRNLEX:4064] +xref: BIRNLEX:4064 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0016525 ! frontal lobe + +[Term] +id: UBERON:0026845 +name: obsolete predominantly gray regional part of Preoptic area +synonym: "predominantly gray regional part of preoptic area" EXACT [BIRNLEX:700] +synonym: "predominantly gray regional part of preoptic area" EXACT HUMAN_PREFERRED [BIRNLEX:700] +is_obsolete: true +consider: BIRNLEX:700 + +[Term] +id: UBERON:0026921 +name: obsolete predominantly gray regional part of substantia nigra +synonym: "predominantly gray regional part of substantia nigra" EXACT HUMAN_PREFERRED [BIRNLEX:782] +synonym: "predominantly gray regional part of substantia nigra" EXACT [BIRNLEX:782] +is_obsolete: true +consider: BIRNLEX:782 + +[Term] +id: UBERON:0026966 +name: obsolete predominantly gray regional part of inferior frontal gyrus +synonym: "predominantly gray regional part of inferior frontal gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:829] +synonym: "predominantly gray regional part of inferior frontal gyrus" EXACT [BIRNLEX:829] +is_obsolete: true +consider: BIRNLEX:829 + +[Term] +id: UBERON:0026975 +name: obsolete predominantly white regional part of anterior commissure +synonym: "predominantly white regional part of anterior commissure" EXACT [BIRNLEX:839] +synonym: "predominantly white regional part of anterior commissure" EXACT HUMAN_PREFERRED [BIRNLEX:839] +is_obsolete: true +consider: BIRNLEX:839 + +[Term] +id: UBERON:0026982 +name: obsolete predominantly gray midline regional part of thalamus +synonym: "predominantly gray midline regional part of thalamus" EXACT [BIRNLEX:849] +synonym: "predominantly gray midline regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:849] +is_obsolete: true +consider: BIRNLEX:849 + +[Term] +id: UBERON:0026986 +name: obsolete regional part of superior temporal sulcus +synonym: "regional part of superior temporal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:856] +synonym: "regional part of superior temporal sulcus" EXACT [BIRNLEX:856] +is_obsolete: true +consider: BIRNLEX:856 + +[Term] +id: UBERON:0027007 +name: obsolete regional part of thoracic spinal cord white matter +synonym: "regional part of thoracic spinal cord white matter" EXACT HUMAN_PREFERRED [BIRNLEX:885] +synonym: "regional part of thoracic spinal cord white matter" EXACT [BIRNLEX:885] +is_obsolete: true +consider: BIRNLEX:885 + +[Term] +id: UBERON:0027052 +name: obsolete predominantly gray regional part of neurohypophysis +synonym: "predominantly gray regional part of neurohypophysis" EXACT HUMAN_PREFERRED [BIRNLEX:933] +synonym: "predominantly gray regional part of neurohypophysis" EXACT [BIRNLEX:933] +is_obsolete: true +consider: BIRNLEX:933 + +[Term] +id: UBERON:0027061 +name: isthmus of cingulate cortex +synonym: "isthmus of cingulate cortex" EXACT [BIRNLEX:943] +synonym: "isthmus of cingulate cortex" EXACT HUMAN_PREFERRED [BIRNLEX:943] +xref: BIRNLEX:943 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0003027 ! cingulate cortex + +[Term] +id: UBERON:0027076 +name: obsolete regional part of Anterior cingulate cortex +synonym: "regional part of anterior cingulate cortex" EXACT HUMAN_PREFERRED [BIRNLEX:960] +synonym: "regional part of anterior cingulate cortex" EXACT [BIRNLEX:960] +is_obsolete: true +consider: BIRNLEX:960 + +[Term] +id: UBERON:0027078 +name: obsolete predominantly gray intralaminal regional part of thalamus +synonym: "predominantly gray intralaminal regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:962] +synonym: "predominantly gray intralaminal regional part of thalamus" EXACT [BIRNLEX:962] +is_obsolete: true +consider: BIRNLEX:962 + +[Term] +id: UBERON:0027094 +name: obsolete regional part of cerebellar peduncular complex +synonym: "regional part of cerebellar peduncular complex" EXACT [BIRNLEX:979] +synonym: "regional part of cerebellar peduncular complex" EXACT HUMAN_PREFERRED [BIRNLEX:979] +is_obsolete: true +consider: BIRNLEX:979 + +[Term] +id: UBERON:0027103 +name: obsolete predominantly gray lateral regional part of thalamus +synonym: "predominantly gray lateral regional part of thalamus" EXACT HUMAN_PREFERRED [BIRNLEX:988] +synonym: "predominantly gray lateral regional part of thalamus" EXACT [BIRNLEX:988] +is_obsolete: true +consider: BIRNLEX:988 + +[Term] +id: UBERON:0027109 +name: lateral eminence of hypophysis +synonym: "lateral eminence" BROAD [] +synonym: "lateral eminence of hypophysis" EXACT HUMAN_PREFERRED [BIRNLEX:994] +synonym: "lateral eminence of hypophysis" EXACT [BIRNLEX:994] +xref: BIRNLEX:994 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=400 +xref: http://linkedlifedata.com/resource/umls/id/C0262266 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0000007 {source="NIFSTD"} ! pituitary gland + +[Term] +id: UBERON:0027113 +name: anterior middle temporal sulcus +synonym: "anterior middle temporal sulcus" EXACT [BIRNLEX:998] +synonym: "anterior middle temporal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:998] +xref: BIRNLEX:998 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=132 +xref: http://linkedlifedata.com/resource/umls/id/C0694593 +is_a: UBERON:0014687 ! temporal sulcus + +[Term] +id: UBERON:0027221 +name: adrenergic system +def: "any molecule, protein, cell, tissue or organ that is related to epinephrine (also known as adrenaline)." [NLXANAT:1005023] +synonym: "adrenergic system" EXACT [NLXANAT:1005023] +xref: NLXANAT:1005023 +is_a: UBERON:0025589 {source="NIFSTD"} ! catecholamine system + +[Term] +id: UBERON:0027225 +name: noradrenergic system +def: "any molecule, protein, cell, tissue or organ that is related to norepinephrine (also known as noradrenaline)." [NLXANAT:1005027] +synonym: "noradrenergic system" EXACT [NLXANAT:1005027] +xref: NLXANAT:1005027 +is_a: UBERON:0025589 {source="NIFSTD"} ! catecholamine system + +[Term] +id: UBERON:0027227 +name: obsolete cytoarchitectural part of retina +synonym: "cytoarchitectural part of retina" EXACT [NLXANAT:1005029] +is_obsolete: true +consider: NLXANAT:1005029 + +[Term] +id: UBERON:0027239 +name: dopaminergic system +def: "any molecule, protein, cell, tissue or organ that is related to dopamine." [NLXANAT:100597] +synonym: "dopaminergic system" EXACT [NLXANAT:100597] +xref: BTO:0003954 +xref: NLXANAT:100597 +is_a: UBERON:0025589 {source="NIFSTD"} ! catecholamine system + +[Term] +id: UBERON:0027243 +name: obsolete matrix part of body of caudate nucleus +synonym: "matrix part of body of caudate nucleus" EXACT [NLXANAT:1010003] +is_obsolete: true +consider: NLXANAT:1010003 + +[Term] +id: UBERON:0027244 +name: striosomal part of body of caudate nucleus +synonym: "striosomal part of body of caudate nucleus" EXACT [NLXANAT:1010004] +xref: NLXANAT:1010004 +is_a: UBERON:0029004 ! striosomal part of caudate nucleus +intersection_of: UBERON:0027371 ! striosome +intersection_of: part_of UBERON:0002630 ! body of caudate nucleus +relationship: part_of UBERON:0002630 ! body of caudate nucleus + +[Term] +id: UBERON:0027245 +name: matrix part of head of caudate nucleus +def: "Matrix compartment located in the head of the caudate nucleus" [NLXANAT:1010005] +synonym: "matrix compartment of head of caudate nucleus" EXACT [] +synonym: "matrix part of head of caudate nucleus" EXACT [NLXANAT:1010005] +xref: NLXANAT:1010005 +is_a: UBERON:0029001 ! matrix compartment of caudate nucleus +intersection_of: UBERON:0027368 ! matrix compartment +intersection_of: part_of UBERON:0002626 ! head of caudate nucleus +relationship: part_of UBERON:0002626 ! head of caudate nucleus + +[Term] +id: UBERON:0027246 +name: matrix part of tail of caudate nucleus +def: "Matrix compartment located in the tail of the caudate nucleus" [NLXANAT:1010006] +synonym: "matrix compartment of tail of caudate nucleus" EXACT [] +synonym: "matrix part of tail of caudate nucleus" EXACT [NLXANAT:1010006] +xref: NLXANAT:1010006 +is_a: UBERON:0029001 ! matrix compartment of caudate nucleus +intersection_of: UBERON:0027368 ! matrix compartment +intersection_of: part_of UBERON:0002628 ! tail of caudate nucleus +relationship: part_of UBERON:0002628 ! tail of caudate nucleus + +[Term] +id: UBERON:0027247 +name: obsolete striosomal part of tail of caudate nucleus +synonym: "striosomal part of tail of caudate nucleus" EXACT [NLXANAT:1010007] +is_obsolete: true +consider: NLXANAT:1010007 + +[Term] +id: UBERON:0027285 +name: paravermis lobule area +synonym: "paravermis of cerebellum" EXACT [DHBA:12384] +synonym: "regional parts of the paravermal lobules" EXACT HUMAN_PREFERRED [NLXANAT:20081214] +synonym: "regional parts of the paravermal lobules" EXACT [NLXANAT:20081214] +xref: DHBA:12384 +xref: NLXANAT:20081214 +is_a: UBERON:0004003 ! cerebellum hemisphere lobule +relationship: part_of UBERON:0025677 {source="NIFSTD"} ! paravermis parts of the cerebellar cortex + +[Term] +id: UBERON:0027309 +name: paravermis of the posterior lobe of the cerebellum +synonym: "paravermis of the posterior lobe of the cerebellum" EXACT [NLXANAT:20081238] +synonym: "paravermis of the posterior lobe of the cerebellum" EXACT HUMAN_PREFERRED [NLXANAT:20081238] +synonym: "paravermis, posterior lobe portion" EXACT [DHBA:12386] +xref: DHBA:12386 +xref: NLXANAT:20081238 +is_a: UBERON:0025677 {source="NIFSTD"} ! paravermis parts of the cerebellar cortex + +[Term] +id: UBERON:0027310 +name: paravermis of the anterior lobe of the cerebellum +synonym: "paravermis of the anterior lobe of the cerebellum" EXACT HUMAN_PREFERRED [NLXANAT:20081239] +synonym: "paravermis of the anterior lobe of the cerebellum" EXACT [NLXANAT:20081239] +synonym: "paravermis, anterior lobe portion" EXACT [DHBA:12385] +xref: DHBA:12385 +xref: NLXANAT:20081239 +is_a: UBERON:0025677 {source="NIFSTD"} ! paravermis parts of the cerebellar cortex + +[Term] +id: UBERON:0027314 +name: obsolete regional Parts of the Interpositus Nucleus +synonym: "regional parts of the interpositus nucleus" EXACT [NLXANAT:20081243] +synonym: "regional parts of the interpositus nucleus" EXACT HUMAN_PREFERRED [NLXANAT:20081243] +is_obsolete: true +consider: NLXANAT:20081243 + +[Term] +id: UBERON:0027331 +name: flocculonodular lobe, hemisphere portion +synonym: "hemispheric part of the flocculonodular lobe of the cerebellum" EXACT [NLXANAT:20081260] +synonym: "hemispheric part of the flocculonodular lobe of the cerebellum" EXACT HUMAN_PREFERRED [NLXANAT:20081260] +xref: NLXANAT:20081260 +is_a: UBERON:0002749 ! regional part of cerebellar cortex +intersection_of: UBERON:0002616 ! regional part of brain +intersection_of: part_of UBERON:0002245 ! cerebellar hemisphere +intersection_of: part_of UBERON:0003012 ! flocculonodular lobe +relationship: part_of UBERON:0002245 ! cerebellar hemisphere +relationship: part_of UBERON:0003012 ! flocculonodular lobe + +[Term] +id: UBERON:0027333 +name: arbor vitae +def: "The white matter contained within the cerebellum, lying deep to the granule cell layer in the cerebellar cortex, excluding the parts of the cerebellar peduncles that extend outside of the cerebellum. The deep cerebellar nuclei are embedded within the arbor vitae." [NLXANAT:20090101] +synonym: "arbor vitae" EXACT HUMAN_PREFERRED [NLXANAT:20090101] +synonym: "arbor vitae" EXACT [NLXANAT:20090101] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=692 +xref: NLXANAT:20090101 +is_a: UBERON:0002317 ! white matter of cerebellum + +[Term] +id: UBERON:0027352 +name: obsolete regional part of supraoptic nucleus +synonym: "regional part of supraoptic nucleus" EXACT [NLXANAT:20090309] +is_obsolete: true +consider: NLXANAT:20090309 + +[Term] +id: UBERON:0027368 +name: matrix compartment +def: "The larger of two chemoarchitectural compartments identified in the neostriatum through differential staining for various biochemical markers. It usually is identified through differentially high staining for acetylcholinesterase and calbinin D28K." [NLXANAT:20090503] +synonym: "matrix" RELATED [NLXANAT:20090503] +synonym: "matrix compartment" EXACT [NLXANAT:20090503] +xref: NLXANAT:20090503 +is_a: UBERON:0025736 {source="NIFSTD"} ! chemoarchitectural part of striatum + +[Term] +id: UBERON:0027371 +name: striosome +def: "One of two compartments identified in the neostriatum, particularly the caudate nucleus, on the basis of differential staining for several biochemical markers such as acetylcholinesterase and calbindin. In individual sections, the striosomes appear as small patches of differentially high or low staining activity. In three dimensions, they form a 3D labyrinth extending throughout the caudate nucleus and in the putamen." [NLXANAT:20090506] +synonym: "striosomal compartment" EXACT [NLXANAT:20090506] +synonym: "striosomal part" RELATED [] +synonym: "striosome" EXACT [NLXANAT:20090506] +xref: NLXANAT:20090506 +is_a: UBERON:0025736 {source="NIFSTD"} ! chemoarchitectural part of striatum + +[Term] +id: UBERON:0027376 +name: obsolete cytoarchitectural part of dorsal cochlear nucleus +synonym: "cytoarchitectural part of dorsal cochlear nucleus" EXACT [NLXANAT:20090511] +synonym: "granule cell layer of dcn" RELATED [NLXANAT:20090511] +synonym: "granule cell layer of dorsal cochlear nucleus" RELATED [NLXANAT:20090511] +is_obsolete: true +consider: NLXANAT:20090511 + +[Term] +id: UBERON:0027417 +name: obsolete predominantly gray regional part of dentate nucleus +synonym: "predominantly gray regional part of dentate nucleus" EXACT [BIRNLEX:1034] +synonym: "predominantly gray regional part of dentate nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1034] +is_obsolete: true +consider: BIRNLEX:1034 + +[Term] +id: UBERON:0027453 +name: obsolete predominantly gray regional part of pontine reticular formation +synonym: "predominantly gray regional part of pontine reticular formation" EXACT [BIRNLEX:1071] +synonym: "predominantly gray regional part of pontine reticular formation" EXACT HUMAN_PREFERRED [BIRNLEX:1071] +is_obsolete: true +consider: BIRNLEX:1071 + +[Term] +id: UBERON:0027513 +name: posterior superior frontal sulcus +synonym: "posterior superior frontal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1130] +synonym: "posterior superior frontal sulcus" EXACT [BIRNLEX:1130] +xref: BIRNLEX:1130 +is_a: UBERON:0000464 ! anatomical space +disjoint_from: UBERON:0027716 {source="lexical"} ! anterior superior frontal sulcus +relationship: part_of UBERON:0002562 {source="NIFSTD"} ! superior frontal sulcus + +[Term] +id: UBERON:0027563 +name: obsolete predominantly gray regional part of dentate gyrus +synonym: "predominantly gray regional part of dentate gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:1183] +synonym: "predominantly gray regional part of dentate gyrus" EXACT [BIRNLEX:1183] +is_obsolete: true +consider: BIRNLEX:1183 + +[Term] +id: UBERON:0027584 +name: obsolete regional part of caudate nucleus +synonym: "regional part of caudate nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1205] +synonym: "regional part of caudate nucleus" EXACT [BIRNLEX:1205] +is_obsolete: true +consider: BIRNLEX:1205 + +[Term] +id: UBERON:0027600 +name: obsolete predominantly gray regional part of neostriatum +synonym: "predominantly gray regional part of neostriatum" EXACT HUMAN_PREFERRED [BIRNLEX:1221] +synonym: "predominantly gray regional part of neostriatum" EXACT [BIRNLEX:1221] +is_obsolete: true +consider: BIRNLEX:1221 + +[Term] +id: UBERON:0027603 +name: obsolete regional part of globus pallidus +synonym: "regional part of globus pallidus" EXACT HUMAN_PREFERRED [BIRNLEX:1224] +synonym: "regional part of globus pallidus" EXACT [BIRNLEX:1224] +is_obsolete: true +consider: BIRNLEX:1224 + +[Term] +id: UBERON:0027604 +name: obsolete predominantly gray regional part of ventral nuclear group +synonym: "predominantly gray regional part of ventral nuclear group" EXACT [BIRNLEX:1225] +synonym: "predominantly gray regional part of ventral nuclear group" EXACT HUMAN_PREFERRED [BIRNLEX:1225] +is_obsolete: true +consider: BIRNLEX:1225 + +[Term] +id: UBERON:0027631 +name: obsolete predominantly gray regional part of medial dorsal nucleus +synonym: "predominantly gray regional part of medial dorsal nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1252] +synonym: "predominantly gray regional part of medial dorsal nucleus" EXACT [BIRNLEX:1252] +is_obsolete: true +consider: BIRNLEX:1252 + +[Term] +id: UBERON:0027649 +name: obsolete regional part of lateral ventricle +synonym: "regional part of lateral ventricle" EXACT HUMAN_PREFERRED [BIRNLEX:1270] +synonym: "regional part of lateral ventricle" EXACT [BIRNLEX:1270] +is_obsolete: true +consider: BIRNLEX:1270 + +[Term] +id: UBERON:0027651 +name: obsolete predominantly gray regional part of median eminence +synonym: "predominantly gray regional part of median eminence" EXACT HUMAN_PREFERRED [BIRNLEX:1272] +synonym: "predominantly gray regional part of median eminence" EXACT [BIRNLEX:1272] +is_obsolete: true +consider: BIRNLEX:1272 + +[Term] +id: UBERON:0027665 +name: obsolete predominantly gray regional part of metathalamus +synonym: "predominantly gray regional part of metathalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1286] +synonym: "predominantly gray regional part of metathalamus" EXACT [BIRNLEX:1286] +is_obsolete: true +consider: BIRNLEX:1286 + +[Term] +id: UBERON:0027687 +name: obsolete predominantly white dorsal regional part of metathalamus +synonym: "predominantly white dorsal regional part of metathalamus" EXACT HUMAN_PREFERRED [BIRNLEX:1308] +synonym: "predominantly white dorsal regional part of metathalamus" EXACT [BIRNLEX:1308] +is_obsolete: true +consider: BIRNLEX:1308 + +[Term] +id: UBERON:0027716 +name: anterior superior frontal sulcus +synonym: "anterior superior frontal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1338] +synonym: "anterior superior frontal sulcus" EXACT [BIRNLEX:1338] +synonym: "anterior superior frontal sulcus" RELATED [NeuroNames:838] +synonym: "polar notch" RELATED [NeuroNames:838] +synonym: "sulcus frontalis superior anterior" RELATED LATIN [NeuroNames:838] +xref: BIRNLEX:1338 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=838 +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0002562 {source="NIFSTD"} ! superior frontal sulcus + +[Term] +id: UBERON:0027728 +name: obsolete predominantly gray regional part of anterior nuclear group +synonym: "predominantly gray regional part of anterior nuclear group" EXACT [BIRNLEX:1350] +synonym: "predominantly gray regional part of anterior nuclear group" EXACT HUMAN_PREFERRED [BIRNLEX:1350] +is_obsolete: true +consider: BIRNLEX:1350 + +[Term] +id: UBERON:0027748 +name: obsolete predominantly gray regional part of superior olivary complex +synonym: "predominantly gray regional part of superior olivary complex" EXACT [BIRNLEX:1370] +synonym: "predominantly gray regional part of superior olivary complex" EXACT HUMAN_PREFERRED [BIRNLEX:1370] +is_obsolete: true +consider: BIRNLEX:1370 + +[Term] +id: UBERON:0027755 +name: obsolete predominantly white regional part of superior olivary complex +synonym: "predominantly white regional part of superior olivary complex" EXACT HUMAN_PREFERRED [BIRNLEX:1377] +synonym: "predominantly white regional part of superior olivary complex" EXACT [BIRNLEX:1377] +is_obsolete: true +consider: BIRNLEX:1377 + +[Term] +id: UBERON:0027758 +name: obsolete regional part of paraventricular nucleus of hypothalamus magnocellular division +synonym: "regional part of paraventricular nucleus of hypothalamus magnocellular division" EXACT HUMAN_PREFERRED [BIRNLEX:1380] +synonym: "regional part of paraventricular nucleus of hypothalamus magnocellular division" EXACT [BIRNLEX:1380] +is_obsolete: true +consider: BIRNLEX:1380 + +[Term] +id: UBERON:0027760 +name: obsolete regional part of superior olive +synonym: "regional part of superior olive" EXACT [BIRNLEX:1382] +synonym: "regional part of superior olive" EXACT HUMAN_PREFERRED [BIRNLEX:1382] +is_obsolete: true +consider: BIRNLEX:1382 + +[Term] +id: UBERON:0027768 +name: suprachiasmatic nucleus dorsomedial part +synonym: "suprachiasmatic nucleus dorsomedial part" EXACT [BIRNLEX:1390] +synonym: "suprachiasmatic nucleus dorsomedial part" EXACT HUMAN_PREFERRED [BIRNLEX:1390] +xref: BIRNLEX:1390 +xref: HBA:4591 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0002034 ! suprachiasmatic nucleus + +[Term] +id: UBERON:0027771 +name: suprachiasmatic nucleus ventrolateral part +synonym: "suprachiasmatic nucleus ventrolateral part" EXACT HUMAN_PREFERRED [BIRNLEX:1393] +synonym: "suprachiasmatic nucleus ventrolateral part" EXACT [BIRNLEX:1393] +xref: BIRNLEX:1393 +xref: HBA:4592 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0002034 ! suprachiasmatic nucleus + +[Term] +id: UBERON:0027796 +name: obsolete regional part of thoracic spinal cord dorsal horn +synonym: "regional part of thoracic spinal cord dorsal horn" EXACT [BIRNLEX:1417] +synonym: "regional part of thoracic spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1417] +is_obsolete: true +consider: BIRNLEX:1417 + +[Term] +id: UBERON:0027814 +name: obsolete regional part of paraventricular nucleus of hypothalamus descending division +synonym: "regional part of paraventricular nucleus of hypothalamus descending division" EXACT [BIRNLEX:1435] +synonym: "regional part of paraventricular nucleus of hypothalamus descending division" EXACT HUMAN_PREFERRED [BIRNLEX:1435] +is_obsolete: true +consider: BIRNLEX:1435 + +[Term] +id: UBERON:0027828 +name: obsolete predominantly gray regional part of hippocampal formation +synonym: "predominantly gray regional part of hippocampal formation" EXACT [BIRNLEX:1449] +synonym: "predominantly gray regional part of hippocampal formation" EXACT HUMAN_PREFERRED [BIRNLEX:1449] +is_obsolete: true +consider: BIRNLEX:1449 + +[Term] +id: UBERON:0027874 +name: obsolete regional part of sacral spinal cord gray matter +synonym: "regional part of sacral spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:1495] +synonym: "regional part of sacral spinal cord gray matter" EXACT [BIRNLEX:1495] +is_obsolete: true +consider: BIRNLEX:1495 + +[Term] +id: UBERON:0028010 +name: obsolete regional part of lumbar spinal cord gray matter +synonym: "regional part of lumbar spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:1631] +synonym: "regional part of lumbar spinal cord gray matter" EXACT [BIRNLEX:1631] +is_obsolete: true +consider: BIRNLEX:1631 + +[Term] +id: UBERON:0028079 +name: obsolete regional part of cervical spinal cord dorsal horn +synonym: "regional part of cervical spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1703] +synonym: "regional part of cervical spinal cord dorsal horn" EXACT [BIRNLEX:1703] +is_obsolete: true +consider: BIRNLEX:1703 + +[Term] +id: UBERON:0028192 +name: obsolete regional part of spiral organ of Corti +synonym: "regional part of spiral organ of corti" EXACT [BIRNLEX:2530] +synonym: "regional part of spiral organ of corti" EXACT HUMAN_PREFERRED [BIRNLEX:2530] +is_obsolete: true +consider: BIRNLEX:2530 + +[Term] +id: UBERON:0028194 +name: spiral prominence of cochlear duct +def: "a projecting portion of the spiral ligament of the cochlea, bounding the lower edge of the stria vascularis and containing within it a blood vessel, the vas prominens." [http://medical-dictionary.thefreedictionary.com/spiral+prominence+of+cochlear+duct] +synonym: "prominentia spiralis ductus cochlearis" EXACT LATIN [http://medical-dictionary.thefreedictionary.com/spiral+prominence+of+cochlear+duct] +synonym: "spiral prominence" BROAD [EMAPA:35799, MA:0003003] +synonym: "spiral prominence of cochlea" EXACT HUMAN_PREFERRED [BIRNLEX:2532] +synonym: "spiral prominence of cochlea" EXACT [BIRNLEX:2532] +synonym: "spiral prominence of cochlear duct" EXACT [FMA:77833] +xref: BIRNLEX:2532 +xref: EMAPA:35799 +xref: FMA:77833 +xref: http://www.snomedbrowser.com/Codes/Details/279843007 +xref: MA:0003003 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous labyrinth + +[Term] +id: UBERON:0028200 +name: obsolete regional part of fovea +synonym: "regional part of fovea" EXACT HUMAN_PREFERRED [BIRNLEX:2545] +synonym: "regional part of fovea" EXACT [BIRNLEX:2545] +is_obsolete: true +consider: BIRNLEX:2545 + +[Term] +id: UBERON:0028205 +name: obsolete regional part of vestibular ganglion +synonym: "regional part of vestibular ganglion" EXACT HUMAN_PREFERRED [BIRNLEX:2550] +synonym: "regional part of vestibular ganglion" EXACT [BIRNLEX:2550] +is_obsolete: true +consider: BIRNLEX:2550 + +[Term] +id: UBERON:0028314 +name: obsolete predominantly gray regional part of amygdala +synonym: "predominantly gray regional part of amygdala" EXACT HUMAN_PREFERRED [BIRNLEX:2681] +synonym: "predominantly gray regional part of amygdala" EXACT [BIRNLEX:2681] +is_obsolete: true +consider: BIRNLEX:2681 + +[Term] +id: UBERON:0028317 +name: obsolete predominantly gray part of basolateral nuclear complex +synonym: "predominantly gray part of basolateral nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:2684] +synonym: "predominantly gray part of basolateral nuclear complex" EXACT [BIRNLEX:2684] +is_obsolete: true +consider: BIRNLEX:2684 + +[Term] +id: UBERON:0028326 +name: obsolete regional part of basal amygdaloid nucleus +synonym: "regional part of basal amygdaloid nucleus" EXACT [BIRNLEX:2693] +synonym: "regional part of basal amygdaloid nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:2693] +is_obsolete: true +consider: BIRNLEX:2693 + +[Term] +id: UBERON:0028337 +name: obsolete regional part of entorhinal cortex +synonym: "regional part of entorhinal cortex" EXACT HUMAN_PREFERRED [BIRNLEX:2704] +synonym: "regional part of entorhinal cortex" EXACT [BIRNLEX:2704] +is_obsolete: true +consider: BIRNLEX:2704 + +[Term] +id: UBERON:0028395 +name: calcarine sulcus (dorsal) +synonym: "calcarine sulcus (dorsal)" EXACT HUMAN_PREFERRED [BIRNLEX:4050] +synonym: "calcarine sulcus (dorsal)" EXACT [BIRNLEX:4050] +xref: BIRNLEX:4050 +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0002586 ! calcarine sulcus + +[Term] +id: UBERON:0028396 +name: calcarine sulcus (ventral) +synonym: "calcarine sulcus (ventral)" EXACT [BIRNLEX:4051] +synonym: "calcarine sulcus (ventral)" EXACT HUMAN_PREFERRED [BIRNLEX:4051] +xref: BIRNLEX:4051 +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0002586 ! calcarine sulcus + +[Term] +id: UBERON:0028398 +name: Hadjikhani et al. (1998) visuotopic area V1d +synonym: "Hadjikhani et al. (1998) visuotopic area v1d" EXACT HUMAN_PREFERRED [BIRNLEX:4053] +synonym: "Hadjikhani et al. (1998) visuotopic area v1d" EXACT [BIRNLEX:4053] +xref: BIRNLEX:4053 +is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region + +[Term] +id: UBERON:0028399 +name: Hadjikhani et al. (1998) visuotopic area V1v +synonym: "Hadjikhani et al. (1998) visuotopic area v1v" EXACT HUMAN_PREFERRED [BIRNLEX:4054] +synonym: "Hadjikhani et al. (1998) visuotopic area v1v" EXACT [BIRNLEX:4054] +xref: BIRNLEX:4054 +is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region + +[Term] +id: UBERON:0028401 +name: Hadjikhani et al. (1998) visuotopic area V2v +synonym: "Hadjikhani et al. (1998) visuotopic area v2v" EXACT HUMAN_PREFERRED [BIRNLEX:4056] +synonym: "Hadjikhani et al. (1998) visuotopic area v2v" EXACT [BIRNLEX:4056] +xref: BIRNLEX:4056 +is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region + +[Term] +id: UBERON:0028402 +name: Hadjikhani et al. (1998) visuotopic area V3 +synonym: "Hadjikhani et al. (1998) visuotopic area v3" EXACT [BIRNLEX:4057] +synonym: "Hadjikhani et al. (1998) visuotopic area v3" EXACT HUMAN_PREFERRED [BIRNLEX:4057] +xref: BIRNLEX:4057 +is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region + +[Term] +id: UBERON:0028403 +name: Hadjikhani et al. (1998) visuotopic area V3A +synonym: "Hadjikhani et al. (1998) visuotopic area v3a" EXACT HUMAN_PREFERRED [BIRNLEX:4058] +synonym: "Hadjikhani et al. (1998) visuotopic area v3a" EXACT [BIRNLEX:4058] +xref: BIRNLEX:4058 +is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region + +[Term] +id: UBERON:0028404 +name: Hadjikhani et al. (1998) visuotopic area VP +synonym: "Hadjikhani et al. (1998) visuotopic area vp" EXACT HUMAN_PREFERRED [BIRNLEX:4059] +synonym: "Hadjikhani et al. (1998) visuotopic area vp" EXACT [BIRNLEX:4059] +xref: BIRNLEX:4059 +is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region + +[Term] +id: UBERON:0028405 +name: Hadjikhani et al. (1998) visuotopic area V4v +synonym: "Hadjikhani et al. (1998) visuotopic area v4v" EXACT [BIRNLEX:4060] +synonym: "Hadjikhani et al. (1998) visuotopic area v4v" EXACT HUMAN_PREFERRED [BIRNLEX:4060] +xref: BIRNLEX:4060 +is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region + +[Term] +id: UBERON:0028406 +name: Hadjikhani et al. (1998) visuotopic area V8 +synonym: "Hadjikhani et al. (1998) visuotopic area v8" EXACT [BIRNLEX:4061] +synonym: "Hadjikhani et al. (1998) visuotopic area v8" EXACT HUMAN_PREFERRED [BIRNLEX:4061] +xref: BIRNLEX:4061 +is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region + +[Term] +id: UBERON:0028412 +name: Ongur, Price, and Ferry (2003) area 10p +synonym: "ongur, price, and ferry (2003) area 10p" EXACT [BIRNLEX:4067] +synonym: "ongur, price, and ferry (2003) area 10p" EXACT HUMAN_PREFERRED [BIRNLEX:4067] +xref: BIRNLEX:4067 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028413 +name: Ongur, Price, and Ferry (2003) area 10r +synonym: "ongur, price, and ferry (2003) area 10r" EXACT [BIRNLEX:4068] +synonym: "ongur, price, and ferry (2003) area 10r" EXACT HUMAN_PREFERRED [BIRNLEX:4068] +xref: BIRNLEX:4068 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028414 +name: Ongur, Price, and Ferry (2003) area 10o +synonym: "ongur, price, and ferry (2003) area 10o" EXACT [BIRNLEX:4069] +synonym: "ongur, price, and ferry (2003) area 10o" EXACT HUMAN_PREFERRED [BIRNLEX:4069] +xref: BIRNLEX:4069 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028415 +name: Ongur, Price, and Ferry (2003) area 10m +def: "Area 10m is a cortical area in the frontal lobe defined on multiple architectonic criteria." [BIRNLEX:4070] +synonym: "ongur, price, and ferry (2003) area 10m" EXACT HUMAN_PREFERRED [BIRNLEX:4070] +synonym: "ongur, price, and ferry (2003) area 10m" EXACT [BIRNLEX:4070] +xref: BIRNLEX:4070 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028416 +name: Ongur, Price, and Ferry (2003) area 11m +synonym: "ongur, price, and ferry (2003) area 11m" EXACT HUMAN_PREFERRED [BIRNLEX:4071] +synonym: "ongur, price, and ferry (2003) area 11m" EXACT [BIRNLEX:4071] +xref: BIRNLEX:4071 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028417 +name: Ongur, Price, and Ferry (2003) area 47s +synonym: "ongur, price, and ferry (2003) area 47s" EXACT [BIRNLEX:4072] +synonym: "ongur, price, and ferry (2003) area 47s" EXACT HUMAN_PREFERRED [BIRNLEX:4072] +xref: BIRNLEX:4072 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028418 +name: Ongur, Price, and Ferry (2003) area 13b +synonym: "ongur, price, and ferry (2003) area 13b" EXACT HUMAN_PREFERRED [BIRNLEX:4073] +synonym: "ongur, price, and ferry (2003) area 13b" EXACT [BIRNLEX:4073] +xref: BIRNLEX:4073 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028419 +name: Ongur, Price, and Ferry (2003) area 13a +synonym: "ongur, price, and ferry (2003) area 13a" EXACT HUMAN_PREFERRED [BIRNLEX:4074] +synonym: "ongur, price, and ferry (2003) area 13a" EXACT [BIRNLEX:4074] +xref: BIRNLEX:4074 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028420 +name: Ongur, Price, and Ferry (2003) area 14r +synonym: "ongur, price, and ferry (2003) area 14r" EXACT HUMAN_PREFERRED [BIRNLEX:4075] +synonym: "ongur, price, and ferry (2003) area 14r" EXACT [BIRNLEX:4075] +xref: BIRNLEX:4075 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028421 +name: Ongur, Price, and Ferry (2003) area 14c +synonym: "ongur, price, and ferry (2003) area 14c" EXACT HUMAN_PREFERRED [BIRNLEX:4076] +synonym: "ongur, price, and ferry (2003) area 14c" EXACT [BIRNLEX:4076] +xref: BIRNLEX:4076 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028422 +name: Ongur, Price, and Ferry (2003) area 24 +synonym: "ongur, price, and ferry (2003) area 24" EXACT [BIRNLEX:4077] +synonym: "ongur, price, and ferry (2003) area 24" EXACT HUMAN_PREFERRED [BIRNLEX:4077] +xref: BIRNLEX:4077 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028423 +name: Ongur, Price, and Ferry (2003) area 25 +synonym: "ongur, price, and ferry (2003) area 25" EXACT [BIRNLEX:4078] +synonym: "ongur, price, and ferry (2003) area 25" EXACT HUMAN_PREFERRED [BIRNLEX:4078] +xref: BIRNLEX:4078 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028424 +name: Ongur, Price, and Ferry (2003) area 32 +synonym: "ongur, price, and ferry (2003) area 32" EXACT [BIRNLEX:4079] +synonym: "ongur, price, and ferry (2003) area 32" EXACT HUMAN_PREFERRED [BIRNLEX:4079] +xref: BIRNLEX:4079 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028425 +name: Ongur, Price, and Ferry (2003) area G +synonym: "ongur, price, and ferry (2003) area g" EXACT [BIRNLEX:4080] +synonym: "ongur, price, and ferry (2003) area g" EXACT HUMAN_PREFERRED [BIRNLEX:4080] +xref: BIRNLEX:4080 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028426 +name: Ongur, Price, and Ferry (2003) area PrCO +alt_id: UBERON:0028438 +synonym: "ongur, price, and ferry (2003) area prco" EXACT [BIRNLEX:4081] +synonym: "ongur, price, and ferry (2003) area prco" EXACT HUMAN_PREFERRED [BIRNLEX:4081] +xref: BIRNLEX:4081 +xref: BIRNLEX:4093 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028427 +name: Ongur, Price, and Ferry (2003) area 11l +synonym: "ongur, price, and ferry (2003) area 11l" EXACT HUMAN_PREFERRED [BIRNLEX:4082] +synonym: "ongur, price, and ferry (2003) area 11l" EXACT [BIRNLEX:4082] +xref: BIRNLEX:4082 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028428 +name: Ongur, Price, and Ferry (2003) area 13m +synonym: "ongur, price, and ferry (2003) area 13m" EXACT HUMAN_PREFERRED [BIRNLEX:4083] +synonym: "ongur, price, and ferry (2003) area 13m" EXACT [BIRNLEX:4083] +xref: BIRNLEX:4083 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028429 +name: Ongur, Price, and Ferry (2003) area 13l +synonym: "ongur, price, and ferry (2003) area 13l" EXACT [BIRNLEX:4084] +synonym: "ongur, price, and ferry (2003) area 13l" EXACT HUMAN_PREFERRED [BIRNLEX:4084] +xref: BIRNLEX:4084 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028430 +name: Ongur, Price, and Ferry (2003) area 47l +synonym: "ongur, price, and ferry (2003) area 47l" EXACT [BIRNLEX:4085] +synonym: "ongur, price, and ferry (2003) area 47l" EXACT HUMAN_PREFERRED [BIRNLEX:4085] +xref: BIRNLEX:4085 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028431 +name: Ongur, Price, and Ferry (2003) area 47m +synonym: "ongur, price, and ferry (2003) area 47m" EXACT [BIRNLEX:4086] +synonym: "ongur, price, and ferry (2003) area 47m" EXACT HUMAN_PREFERRED [BIRNLEX:4086] +xref: BIRNLEX:4086 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028432 +name: Ongur, Price, and Ferry (2003) area 47r +synonym: "ongur, price, and ferry (2003) area 47r" EXACT HUMAN_PREFERRED [BIRNLEX:4087] +synonym: "ongur, price, and ferry (2003) area 47r" EXACT [BIRNLEX:4087] +xref: BIRNLEX:4087 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028433 +name: Ongur, Price, and Ferry (2003) area Iam +synonym: "ongur, price, and ferry (2003) area iam" EXACT [BIRNLEX:4088] +synonym: "ongur, price, and ferry (2003) area iam" EXACT HUMAN_PREFERRED [BIRNLEX:4088] +xref: BIRNLEX:4088 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028434 +name: Ongur, Price, and Ferry (2003) area Ial +def: "Insula agranular lateral area" [BIRNLEX:4089] +synonym: "ongur, price, and ferry (2003) area ial" EXACT [BIRNLEX:4089] +synonym: "ongur, price, and ferry (2003) area ial" EXACT HUMAN_PREFERRED [BIRNLEX:4089] +xref: BIRNLEX:4089 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028435 +name: Ongur, Price, and Ferry (2003) area Iai +synonym: "ongur, price, and ferry (2003) area iai" EXACT HUMAN_PREFERRED [BIRNLEX:4090] +synonym: "ongur, price, and ferry (2003) area iai" EXACT [BIRNLEX:4090] +xref: BIRNLEX:4090 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028436 +name: Ongur, Price, and Ferry (2003) area 9 +synonym: "ongur, price, and ferry (2003) area 9" EXACT HUMAN_PREFERRED [BIRNLEX:4091] +synonym: "ongur, price, and ferry (2003) area 9" EXACT [BIRNLEX:4091] +xref: BIRNLEX:4091 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028437 +name: Ongur, Price, and Ferry (2003) area 10l +synonym: "ongur, price, and ferry (2003) area 10l" EXACT HUMAN_PREFERRED [BIRNLEX:4092] +synonym: "ongur, price, and ferry (2003) area 10l" EXACT [BIRNLEX:4092] +xref: BIRNLEX:4092 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028439 +name: Ongur, Price, and Ferry (2003) area Iapm +synonym: "ongur, price, and ferry (2003) area iapm" EXACT HUMAN_PREFERRED [BIRNLEX:4094] +synonym: "ongur, price, and ferry (2003) area iapm" EXACT [BIRNLEX:4094] +xref: BIRNLEX:4094 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028440 +name: Ongur, Price, and Ferry (2003) area AON +synonym: "ongur, price, and ferry (2003) area aon" EXACT HUMAN_PREFERRED [BIRNLEX:4095] +synonym: "ongur, price, and ferry (2003) area aon" EXACT [BIRNLEX:4095] +xref: BIRNLEX:4095 +is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region + +[Term] +id: UBERON:0028544 +name: obsolete predominantly gray part of posterior nuclear complex +synonym: "predominantly gray part of posterior nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:772] +synonym: "predominantly gray part of posterior nuclear complex" EXACT [BIRNLEX:772] +is_obsolete: true +consider: BIRNLEX:772 + +[Term] +id: UBERON:0028615 +name: obsolete predominantly gray part of Intralaminar nuclear group +synonym: "predominantly gray part of intralaminar nuclear group" EXACT HUMAN_PREFERRED [BIRNLEX:852] +synonym: "predominantly gray part of intralaminar nuclear group" EXACT [BIRNLEX:852] +is_obsolete: true +consider: BIRNLEX:852 + +[Term] +id: UBERON:0028616 +name: obsolete predominantly gray regional part of midline nuclear group +synonym: "predominantly gray regional part of midline nuclear group" EXACT HUMAN_PREFERRED [BIRNLEX:854] +synonym: "predominantly gray regional part of midline nuclear group" EXACT [BIRNLEX:854] +is_obsolete: true +consider: BIRNLEX:854 + +[Term] +id: UBERON:0028622 +name: banks of superior temporal sulcus +def: "Component of the temporal lobe, lateral aspect. The rostral boundary is the superior temporal gyrus and the caudal boundary the middle temporal gyrus. Within the FreeSurfer definition, this reflects primarily the posterior aspect of the superior temporal sulcus (Christine Fennema-Notestine)." [BIRNLEX:862] +synonym: "banks of superior temporal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:862] +synonym: "banks of superior temporal sulcus" EXACT [BIRNLEX:862] +xref: BIRNLEX:862 +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0002734 ! superior temporal sulcus + +[Term] +id: UBERON:0028715 +name: caudal anterior cingulate cortex +def: "Component of the cingulate cortex. The rostral boundary was the first appearance of the genu of the corpus callosum whereas the caudal boundary was established as the first appearance of the mammillary bodies. The medial boundary was the medial aspect of the cortex. The supero-lateral boundary was the superior frontal gyrus whereas the infero-lateral boundary was the corpus callosum (Christine Fennema-Notestine)." [BIRNLEX:967] +synonym: "caudal anterior cingulate cortex" EXACT HUMAN_PREFERRED [BIRNLEX:967] +synonym: "caudal anterior cingulate cortex" EXACT [BIRNLEX:967] +xref: BIRNLEX:967 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0009835 ! anterior cingulate cortex + +[Term] +id: UBERON:0028725 +name: obsolete regional part of substantia nigra pars reticulata +synonym: "regional part of substantia nigra pars reticulata" EXACT [BIRNLEX:978] +synonym: "regional part of substantia nigra pars reticulata" EXACT HUMAN_PREFERRED [BIRNLEX:978] +is_obsolete: true +consider: BIRNLEX:978 + +[Term] +id: UBERON:0028744 +name: obsolete predominantly gray regional part of lateral nuclear group +synonym: "predominantly gray regional part of lateral nuclear group" EXACT [BIRNLEX:997] +synonym: "predominantly gray regional part of lateral nuclear group" EXACT HUMAN_PREFERRED [BIRNLEX:997] +is_obsolete: true +consider: BIRNLEX:997 + +[Term] +id: UBERON:0028918 +name: paravermic lobule II +synonym: "paravermic lobule ii" EXACT HUMAN_PREFERRED [NLXANAT:20081215] +synonym: "paravermic lobule ii" EXACT [NLXANAT:20081215] +xref: HBA:4717 +xref: NLXANAT:20081215 +is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area + +[Term] +id: UBERON:0028919 +name: paravermic lobule III +synonym: "paravermic lobule iii" EXACT [NLXANAT:20081216] +synonym: "paravermic lobule iii" EXACT HUMAN_PREFERRED [NLXANAT:20081216] +xref: HBA:4718 +xref: NLXANAT:20081216 +is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area + +[Term] +id: UBERON:0028920 +name: paravermic lobule IV +synonym: "paravermic lobule iv" EXACT [NLXANAT:20081217] +synonym: "paravermic lobule iv" EXACT HUMAN_PREFERRED [NLXANAT:20081217] +xref: HBA:4719 +xref: NLXANAT:20081217 +is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area + +[Term] +id: UBERON:0028921 +name: paravermic lobule IX +synonym: "paravermic lobule ix" EXACT [NLXANAT:20081218] +synonym: "paravermic lobule ix" EXACT HUMAN_PREFERRED [NLXANAT:20081218] +synonym: "ventralis" RELATED [NLXANAT:20081218] +xref: HBA:4728 +xref: NLXANAT:20081218 +is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area + +[Term] +id: UBERON:0028922 +name: paravermic lobule V +synonym: "paravermic lobule v" EXACT HUMAN_PREFERRED [NLXANAT:20081219] +synonym: "paravermic lobule v" EXACT [NLXANAT:20081219] +xref: HBA:4720 +xref: NLXANAT:20081219 +is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area + +[Term] +id: UBERON:0028923 +name: paravermic lobule VI +synonym: "paravermic lobule vi" EXACT [NLXANAT:20081220] +synonym: "paravermic lobule vi" EXACT HUMAN_PREFERRED [NLXANAT:20081220] +xref: HBA:4722 +xref: NLXANAT:20081220 +is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area + +[Term] +id: UBERON:0028924 +name: paravermic lobule VII +synonym: "paravermic lobule vii" EXACT [NLXANAT:20081221] +synonym: "paravermic lobule vii" EXACT HUMAN_PREFERRED [NLXANAT:20081221] +xref: NLXANAT:20081221 +is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area + +[Term] +id: UBERON:0028925 +name: paravermic lobule VIII +synonym: "paravermic lobule viii" EXACT HUMAN_PREFERRED [NLXANAT:20081222] +synonym: "paravermic lobule viii" EXACT [NLXANAT:20081222] +xref: NLXANAT:20081222 +is_a: UBERON:0027285 {source="NIFSTD"} ! paravermis lobule area + +[Term] +id: UBERON:0029001 +name: matrix compartment of caudate nucleus +def: "Matrix compartment located in the caudate nucleus" [NLXANAT:20090504] +synonym: "matrix compartment of caudate nucleus" EXACT [NLXANAT:20090504] +xref: NLXANAT:20090504 +is_a: UBERON:0027368 ! matrix compartment +intersection_of: UBERON:0027368 ! matrix compartment +intersection_of: part_of UBERON:0001873 ! caudate nucleus +relationship: part_of UBERON:0001873 ! caudate nucleus + +[Term] +id: UBERON:0029002 +name: matrix compartment of putamen +synonym: "matrix compartment of putamen" EXACT [NLXANAT:20090505] +xref: NLXANAT:20090505 +is_a: UBERON:0027368 ! matrix compartment +intersection_of: UBERON:0027368 ! matrix compartment +intersection_of: part_of UBERON:0001874 ! putamen +relationship: part_of UBERON:0001874 ! putamen + +[Term] +id: UBERON:0029004 +name: striosomal part of caudate nucleus +synonym: "striosomal part of caudate nucleus" EXACT [NLXANAT:20090507] +xref: NLXANAT:20090507 +is_a: UBERON:0027371 ! striosome +intersection_of: UBERON:0027371 ! striosome +intersection_of: part_of UBERON:0001873 ! caudate nucleus +relationship: part_of UBERON:0001873 ! caudate nucleus + +[Term] +id: UBERON:0029005 +name: striosomal part of putamen +synonym: "striosomal part of putamen" EXACT [NLXANAT:20090508] +xref: NLXANAT:20090508 +is_a: UBERON:0027371 ! striosome +intersection_of: UBERON:0027371 ! striosome +intersection_of: part_of UBERON:0001874 ! putamen +relationship: part_of UBERON:0001874 ! putamen + +[Term] +id: UBERON:0029009 +name: granular cell layer of dorsal cochlear nucleus +synonym: "granular cell layer of dorsal cochlear nucleus" EXACT [NLXANAT:20090512] +xref: NLXANAT:20090512 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +relationship: part_of UBERON:0002829 ! dorsal cochlear nucleus + +[Term] +id: UBERON:0029140 +name: obsolete predominantly gray regional part of ventral lateral nucleus +synonym: "predominantly gray regional part of ventral lateral nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1124] +synonym: "predominantly gray regional part of ventral lateral nucleus" EXACT [BIRNLEX:1124] +is_obsolete: true +consider: BIRNLEX:1124 + +[Term] +id: UBERON:0029215 +name: obsolete predominantly white dorsal regional part of medial geniculate body +synonym: "predominantly white dorsal regional part of medial geniculate body" EXACT HUMAN_PREFERRED [BIRNLEX:1203] +synonym: "predominantly white dorsal regional part of medial geniculate body" EXACT [BIRNLEX:1203] +is_obsolete: true +consider: BIRNLEX:1203 + +[Term] +id: UBERON:0029396 +name: obsolete predominantly gray regional part of superior olive +synonym: "predominantly gray regional part of superior olive" EXACT HUMAN_PREFERRED [BIRNLEX:1385] +synonym: "predominantly gray regional part of superior olive" EXACT [BIRNLEX:1385] +is_obsolete: true +consider: BIRNLEX:1385 + +[Term] +id: UBERON:0029415 +name: obsolete regional part of paraventricular nucleus of hypothalamus magnocellular division - posterior magnocellular part +synonym: "regional part of paraventricular nucleus of hypothalamus magnocellular division - posterior magnocellular part" EXACT HUMAN_PREFERRED [BIRNLEX:1403] +synonym: "regional part of paraventricular nucleus of hypothalamus magnocellular division - posterior magnocellular part" EXACT [BIRNLEX:1403] +is_obsolete: true +consider: BIRNLEX:1403 + +[Term] +id: UBERON:0029503 +name: sacral spinal cord gray matter +synonym: "sacral spinal cord gray matter" EXACT [BIRNLEX:1491] +synonym: "sacral spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:1491] +xref: BIRNLEX:1491 +is_a: UBERON:0002315 ! gray matter of spinal cord +intersection_of: UBERON:0002020 ! gray matter +intersection_of: part_of UBERON:0005843 ! sacral spinal cord +relationship: part_of UBERON:0005843 ! sacral spinal cord + +[Term] +id: UBERON:0029538 +name: sacral spinal cord lateral horn +synonym: "sacral spinal cord intermediate horn" RELATED [BIRNLEX:1527] +synonym: "sacral spinal cord lateral horn" EXACT [BIRNLEX:1527] +synonym: "sacral spinal cord lateral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1527] +xref: BIRNLEX:1527 +is_a: UBERON:0004676 ! spinal cord lateral horn +intersection_of: UBERON:0004676 ! spinal cord lateral horn +intersection_of: part_of UBERON:0005843 ! sacral spinal cord +disjoint_from: UBERON:0032748 {source="NIFSTD"} ! sacral spinal cord ventral horn +relationship: part_of UBERON:0029503 ! sacral spinal cord gray matter + +[Term] +id: UBERON:0029594 +name: obsolete predominantly gray regional part of lateral geniculate body +synonym: "predominantly gray regional part of lateral geniculate body" EXACT HUMAN_PREFERRED [BIRNLEX:1583] +synonym: "predominantly gray regional part of lateral geniculate body" EXACT [BIRNLEX:1583] +is_obsolete: true +consider: BIRNLEX:1583 + +[Term] +id: UBERON:0029603 +name: obsolete predominantly gray regional part of medial geniculate body +synonym: "predominantly gray regional part of medial geniculate body" EXACT HUMAN_PREFERRED [BIRNLEX:1592] +synonym: "predominantly gray regional part of medial geniculate body" EXACT [BIRNLEX:1592] +is_obsolete: true +consider: BIRNLEX:1592 + +[Term] +id: UBERON:0029626 +name: cervical spinal cord gray commissure +synonym: "cervical spinal cord gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:1614] +synonym: "cervical spinal cord gray commissure" EXACT [BIRNLEX:1614] +xref: BIRNLEX:1614 +is_a: UBERON:0014613 ! cervical spinal cord gray matter +is_a: UBERON:0014631 ! dorsal gray commissure of spinal cord +intersection_of: UBERON:0014631 ! dorsal gray commissure of spinal cord +intersection_of: part_of UBERON:0002726 ! cervical spinal cord + +[Term] +id: UBERON:0029629 +name: obsolete predominantly white regional part of globus pallidus +synonym: "predominantly white regional part of globus pallidus" EXACT HUMAN_PREFERRED [BIRNLEX:1617] +synonym: "predominantly white regional part of globus pallidus" EXACT [BIRNLEX:1617] +is_obsolete: true +consider: BIRNLEX:1617 + +[Term] +id: UBERON:0029636 +name: lumbar spinal cord gray matter +synonym: "lumbar spinal cord gray matter" EXACT [BIRNLEX:1624] +synonym: "lumbar spinal cord gray matter" EXACT HUMAN_PREFERRED [BIRNLEX:1624] +xref: BIRNLEX:1624 +is_a: UBERON:0002315 ! gray matter of spinal cord +intersection_of: UBERON:0002020 ! gray matter +intersection_of: part_of UBERON:0002792 ! lumbar spinal cord +relationship: part_of UBERON:0002792 ! lumbar spinal cord + +[Term] +id: UBERON:0029681 +name: obsolete predominantly gray regional part of ventral posterior nucleus +synonym: "predominantly gray regional part of ventral posterior nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1671] +synonym: "predominantly gray regional part of ventral posterior nucleus" EXACT [BIRNLEX:1671] +is_obsolete: true +consider: BIRNLEX:1671 + +[Term] +id: UBERON:0029822 +name: obsolete regional part of basilar membrane +synonym: "regional part of basilar membrane" EXACT [BIRNLEX:2527] +synonym: "regional part of basilar membrane" EXACT HUMAN_PREFERRED [BIRNLEX:2527] +is_obsolete: true +consider: BIRNLEX:2527 + +[Term] +id: UBERON:0029861 +name: obsolete regional part of trapezoid nuclear complex +synonym: "regional part of trapezoid nuclear complex" EXACT [BIRNLEX:2574] +synonym: "regional part of trapezoid nuclear complex" EXACT HUMAN_PREFERRED [BIRNLEX:2574] +is_obsolete: true +consider: BIRNLEX:2574 + +[Term] +id: UBERON:0029954 +name: obsolete regional part of lateral amygdaloid nucleus +synonym: "regional part of lateral amygdaloid nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:2688] +synonym: "regional part of lateral amygdaloid nucleus" EXACT [BIRNLEX:2688] +is_obsolete: true +consider: BIRNLEX:2688 + +[Term] +id: UBERON:0029960 +name: obsolete predominantly gray part of basal amygdaloid nucleus +synonym: "predominantly gray part of basal amygdaloid nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:2694] +synonym: "predominantly gray part of basal amygdaloid nucleus" EXACT [BIRNLEX:2694] +is_obsolete: true +consider: BIRNLEX:2694 + +[Term] +id: UBERON:0030119 +name: obsolete predominantly gray regional part of ventral anterior nucleus +synonym: "predominantly gray regional part of ventral anterior nucleus" EXACT [BIRNLEX:709] +synonym: "predominantly gray regional part of ventral anterior nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:709] +is_obsolete: true +consider: BIRNLEX:709 + +[Term] +id: UBERON:0030242 +name: obsolete predominantly gray regional part of pulvinar +synonym: "predominantly gray regional part of pulvinar" EXACT HUMAN_PREFERRED [BIRNLEX:841] +synonym: "predominantly gray regional part of pulvinar" EXACT [BIRNLEX:841] +is_obsolete: true +consider: BIRNLEX:841 + +[Term] +id: UBERON:0030276 +name: lumbar spinal cord ventral horn +synonym: "lumbar spinal cord anterior horn" RELATED [BIRNLEX:891] +synonym: "lumbar spinal cord ventral horn" EXACT HUMAN_PREFERRED [BIRNLEX:891] +synonym: "lumbar spinal cord ventral horn" EXACT [BIRNLEX:891] +xref: BIRNLEX:891 +is_a: UBERON:0002257 ! ventral horn of spinal cord +intersection_of: UBERON:0002257 ! ventral horn of spinal cord +intersection_of: part_of UBERON:0002792 ! lumbar spinal cord +disjoint_from: UBERON:0031906 {source="NIFSTD"} ! lumbar spinal cord lateral horn +disjoint_from: UBERON:0033483 {source="NIFSTD"} ! lumbar spinal cord gray commissure +relationship: part_of UBERON:0029636 ! lumbar spinal cord gray matter + +[Term] +id: UBERON:0030330 +name: obsolete predominantly gray part of rostral intralaminar nuclei +synonym: "predominantly gray part of rostral intralaminar nuclei" EXACT HUMAN_PREFERRED [BIRNLEX:948] +synonym: "predominantly gray part of rostral intralaminar nuclei" EXACT [BIRNLEX:948] +is_obsolete: true +consider: BIRNLEX:948 + +[Term] +id: UBERON:0030649 +name: cytoarchitecture of entorhinal cortex +synonym: "cytoarchitecture of entorhinal cortex" EXACT HUMAN_PREFERRED [NLXANAT:20090703] +synonym: "cytoarchitecture of entorhinal cortex" EXACT [NLXANAT:20090703] +xref: NLXANAT:20090703 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002728 ! entorhinal cortex + +[Term] +id: UBERON:0031111 +name: sacral spinal cord gray commissure +synonym: "sacral spinal cord gray commissure" EXACT [BIRNLEX:1459] +synonym: "sacral spinal cord gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:1459] +xref: BIRNLEX:1459 +is_a: UBERON:0014631 ! dorsal gray commissure of spinal cord +is_a: UBERON:0029503 ! sacral spinal cord gray matter +intersection_of: UBERON:0014631 ! dorsal gray commissure of spinal cord +intersection_of: part_of UBERON:0005843 ! sacral spinal cord +disjoint_from: UBERON:0032748 {source="NIFSTD"} ! sacral spinal cord ventral horn + +[Term] +id: UBERON:0031196 +name: obsolete predominantly gray regional part of globus pallidus +synonym: "predominantly gray regional part of globus pallidus" EXACT HUMAN_PREFERRED [BIRNLEX:1545] +synonym: "predominantly gray regional part of globus pallidus" EXACT [BIRNLEX:1545] +is_obsolete: true +consider: BIRNLEX:1545 + +[Term] +id: UBERON:0031314 +name: obsolete predominantly gray regional part of ventral posterolateral nucleus +synonym: "predominantly gray regional part of ventral posterolateral nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:1664] +synonym: "predominantly gray regional part of ventral posterolateral nucleus" EXACT [BIRNLEX:1664] +is_obsolete: true +consider: BIRNLEX:1664 + +[Term] +id: UBERON:0031906 +name: lumbar spinal cord lateral horn +synonym: "lumbar spinal cord intermediate horn" RELATED [BIRNLEX:877] +synonym: "lumbar spinal cord lateral horn" EXACT [BIRNLEX:877] +synonym: "lumbar spinal cord lateral horn" EXACT HUMAN_PREFERRED [BIRNLEX:877] +xref: BIRNLEX:877 +is_a: UBERON:0004676 ! spinal cord lateral horn +intersection_of: UBERON:0004676 ! spinal cord lateral horn +intersection_of: part_of UBERON:0002792 ! lumbar spinal cord +disjoint_from: UBERON:0033483 {source="NIFSTD"} ! lumbar spinal cord gray commissure +relationship: part_of UBERON:0029636 ! lumbar spinal cord gray matter + +[Term] +id: UBERON:0031948 +name: obsolete predominantly gray regional part of ventral posteromedial nucleus +synonym: "predominantly gray regional part of ventral posteromedial nucleus" EXACT [BIRNLEX:924] +synonym: "predominantly gray regional part of ventral posteromedial nucleus" EXACT HUMAN_PREFERRED [BIRNLEX:924] +is_obsolete: true +consider: BIRNLEX:924 + +[Term] +id: UBERON:0032748 +name: sacral spinal cord ventral horn +synonym: "sacral spinal cord anterior horn" RELATED [BIRNLEX:1457] +synonym: "sacral spinal cord ventral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1457] +synonym: "sacral spinal cord ventral horn" EXACT [BIRNLEX:1457] +xref: BIRNLEX:1457 +is_a: UBERON:0002257 ! ventral horn of spinal cord +intersection_of: UBERON:0002257 ! ventral horn of spinal cord +intersection_of: part_of UBERON:0005843 ! sacral spinal cord +relationship: part_of UBERON:0029503 ! sacral spinal cord gray matter + +[Term] +id: UBERON:0033483 +name: lumbar spinal cord gray commissure +synonym: "lumbar spinal cord gray commissure" EXACT HUMAN_PREFERRED [BIRNLEX:802] +synonym: "lumbar spinal cord gray commissure" EXACT [BIRNLEX:802] +xref: BIRNLEX:802 +is_a: UBERON:0014631 ! dorsal gray commissure of spinal cord +is_a: UBERON:0029636 ! lumbar spinal cord gray matter +intersection_of: UBERON:0014631 ! dorsal gray commissure of spinal cord +intersection_of: part_of UBERON:0002792 ! lumbar spinal cord + +[Term] +id: UBERON:0033939 +name: sacral spinal cord dorsal horn +synonym: "sacral spinal cord dorsal horn" EXACT [BIRNLEX:1453] +synonym: "sacral spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:1453] +synonym: "sacral spinal cord posterior horn" RELATED [BIRNLEX:1453] +xref: BIRNLEX:1453 +is_a: UBERON:0002256 ! dorsal horn of spinal cord +intersection_of: UBERON:0002256 ! dorsal horn of spinal cord +intersection_of: part_of UBERON:0005843 ! sacral spinal cord +relationship: part_of UBERON:0029503 ! sacral spinal cord gray matter + +[Term] +id: UBERON:0034667 +name: obsolete regional part of lumbar spinal cord dorsal horn +synonym: "regional part of lumbar spinal cord dorsal horn" EXACT [BIRNLEX:791] +synonym: "regional part of lumbar spinal cord dorsal horn" EXACT HUMAN_PREFERRED [BIRNLEX:791] +is_obsolete: true +consider: BIRNLEX:791 + +[Term] +id: UBERON:0034670 +name: palatal taste bud +def: "A taste bud that is located on the soft palate, in the roof of the mouth." [http://orcid.org/0000-0002-6601-2165, https://doi.org/10.1523/JNEUROSCI.5142-05.2006] +synonym: "taste bud of palate" EXACT [] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0013765 ! digestive system element +is_a: UBERON:0034722 ! mouth roof taste bud +intersection_of: UBERON:0001727 ! taste bud +intersection_of: part_of UBERON:0001733 ! soft palate +relationship: part_of UBERON:0001733 ! soft palate +relationship: part_of UBERON:0014453 ! gustatory epithelium of palate + +[Term] +id: UBERON:0034671 +name: arcuate sulcus +def: "Composite sulcus of the frontal lobe of the macaque. Located on the dorsolateral surface, it consists of the superior ramus of the arcuate sulcus (macaque), the inferior ramus of the arcuate sulcus and the spur of the arcuate sulcus (macaque) (http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2379)" [NLX:153910] +synonym: "arcuate sulcus" RELATED [NeuroNames:2379] +synonym: "inferior precentral sulcus (Walker)" RELATED [NeuroNames:2379] +synonym: "sulcus arcuata" RELATED LATIN [NeuroNames:2379] +synonym: "sulcus arcuatis" RELATED LATIN [NeuroNames:2379] +synonym: "sulcus arcuatus" RELATED LATIN [NeuroNames:2379] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2379 +xref: NLX:153910 +is_a: UBERON:0013118 ! sulcus of brain +relationship: part_of UBERON:0016525 {source="NIFSTD"} ! frontal lobe +relationship: present_in_taxon NCBITaxon:9539 + +[Term] +id: UBERON:0034672 +name: lateral eminence of fourth ventricle +synonym: "area vestibularis" RELATED LATIN [NeuroNames:623] +synonym: "lateral eminence of fourth ventricle" EXACT [FMA:78478] +synonym: "vestibular area" BROAD [FMA:78478] +xref: FMA:78478 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=623 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002422 ! fourth ventricle + +[Term] +id: UBERON:0034673 +name: amygdalohippocampal area +def: "A cytoarchitecturally defined portion of the periamygdalar area and the cortical amygdalar nucleus at the caudal extreme of the amygdala." [http://en.wikipedia.org/wiki/Amygdalohippocampal_area] +synonym: "AHA" RELATED ABBREVIATION [DHBA:10377] +synonym: "amygdalo-hippocampal area" RELATED [NeuroNames:2028] +synonym: "amygdalohippocampal area" RELATED [NeuroNames:2028] +synonym: "amygdalohippocampal transition area" RELATED [NeuroNames:2028] +synonym: "area amygdalohippocampalis" RELATED LATIN [NeuroNames:2028] +synonym: "area parahippocampalis" RELATED LATIN [http://en.wikipedia.org/wiki/Amygdalohippocampal_area] +synonym: "area periamygdalae caudalis ventralis" RELATED LATIN [NeuroNames:2028] +synonym: "posterior amygdalar nucleus" RELATED [NeuroNames:2028] +synonym: "posterior nucleus amygdala" RELATED [NeuroNames:2028] +synonym: "posterior nucleus of the amygdala" RELATED [NeuroNames:2028] +xref: Amygdalohippocampal:area +xref: DHBA:10377 +xref: DMBA:15945 +xref: EMAPA:35124 +xref: EMAPA:35128 {source="MA"} +xref: FMA:77607 +xref: HBA:4330 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2028 +xref: MA:0002917 +xref: PBA:10135 +is_a: UBERON:0005401 ! cerebral hemisphere gray matter +is_a: UBERON:0007245 ! nuclear complex of neuraxis +relationship: part_of UBERON:0006108 {source="DHBA"} ! corticomedial nuclear complex + +[Term] +id: UBERON:0034674 +name: sulcus of limbic lobe +synonym: "intralimbic sulcus" RELATED [NeuroNames:1314] +synonym: "LLs" RELATED ABBREVIATION [HBA:9393] +xref: HBA:9393 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1314 +is_a: UBERON:0013118 ! sulcus of brain +relationship: part_of UBERON:0002600 ! limbic lobe + +[Term] +id: UBERON:0034676 +name: forceps major of corpus callosum +synonym: "ccs-ma" RELATED ABBREVIATION [DHBA:12025] +synonym: "corpus callosum, forceps major" RELATED LATIN [NeuroNames:197] +synonym: "corpus callosum, posterior forceps (Arnold)" RELATED [NeuroNames:197] +synonym: "forceps major" EXACT [FMA:TA] +synonym: "forceps major corporis callosi" RELATED LATIN [NeuroNames:197] +synonym: "forceps major of corpus callosum" EXACT [FMA:61949] +synonym: "forceps major of corpus callosum" RELATED [NeuroNames:197] +synonym: "forceps major of the corpus callosum" RELATED [NeuroNames:197] +synonym: "forceps occipitalis" EXACT [FMA:TA] +synonym: "forceps occipitalis" RELATED LATIN [NeuroNames:197] +synonym: "major forceps" EXACT [FMA:61949] +synonym: "occipital forceps" EXACT [FMA:61949] +synonym: "occipital forceps" RELATED [NeuroNames:197] +synonym: "posterior forceps" EXACT [FMA:61949] +synonym: "posterior forceps" RELATED [NeuroNames:197] +synonym: "posterior forceps of corpus callosum" EXACT [FMA:61949] +synonym: "posterior forceps of the corpus callosum" RELATED [NeuroNames:197] +xref: DHBA:12025 +xref: FMA:61949 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=197 +xref: http://www.snomedbrowser.com/Codes/Details/369201007 +is_a: UBERON:0002437 ! cerebral hemisphere white matter +disjoint_from: UBERON:0034678 {source="lexical"} ! forceps minor of corpus callosum +relationship: part_of UBERON:0015708 {source="DHBA"} ! splenium of the corpus callosum + +[Term] +id: UBERON:0034678 +name: forceps minor of corpus callosum +synonym: "anterior forceps" EXACT [FMA:61944] +synonym: "anterior forceps" RELATED [NeuroNames:192] +synonym: "anterior forceps of corpus callosum" EXACT [FMA:61944] +synonym: "anterior forceps of the corpus callosum" RELATED [NeuroNames:192] +synonym: "corpus callosum, anterior forceps" RELATED [NeuroNames:192] +synonym: "corpus callosum, anterior forceps (Arnold)" RELATED [NeuroNames:192] +synonym: "corpus callosum, forceps minor" RELATED LATIN [NeuroNames:192] +synonym: "forceps frontalis" EXACT [FMA:TA] +synonym: "forceps frontalis" RELATED LATIN [NeuroNames:192] +synonym: "forceps minor" EXACT [FMA:TA] +synonym: "forceps minor" RELATED LATIN [NeuroNames:192] +synonym: "forceps minor corporis callosi" RELATED LATIN [NeuroNames:192] +synonym: "forceps minor of corpus callosum" RELATED LATIN [NeuroNames:192] +synonym: "forceps minor of the corpus callosum" RELATED [NeuroNames:192] +synonym: "frontal forceps" EXACT [FMA:61944] +synonym: "frontal forceps" RELATED [NeuroNames:192] +synonym: "minor forceps" EXACT [FMA:61944] +xref: DHBA:12024 +xref: FMA:61944 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=192 +xref: http://www.snomedbrowser.com/Codes/Details/369199005 +is_a: UBERON:0002437 ! cerebral hemisphere white matter +relationship: part_of UBERON:0015599 {source="DHBA"} ! genu of corpus callosum + +[Term] +id: UBERON:0034680 +name: laryngeal prominence +def: "A zone of thyroid cartilage formed by fusion of the two plate-like laminae of the cartilages." [http://en.wikipedia.org/wiki/Thyroid_cartilage, http://orcid.org/0000-0002-6601-2165] +synonym: "Adam's apple" EXACT [FMA:55304] +synonym: "Adams apple" EXACT [] +xref: BTO:0003656 +xref: FMA:55304 +xref: http://www.snomedbrowser.com/Codes/Details/362648003 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0034944 {source="FMA"} ! zone of organ +relationship: part_of UBERON:0001738 ! thyroid cartilage + +[Term] +id: UBERON:0034681 +name: vocal organ +def: "Any organ that is the primary organ of vocalization behavior. Examples: The laryngeal vocal cord (humans), the syrinx (birds)." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0000062 ! organ + +[Term] +id: UBERON:0034688 +name: spermatic fascia +xref: http://www.snomedbrowser.com/Codes/Details/279652001 +is_a: UBERON:0008982 ! fascia + +[Term] +id: UBERON:0034690 +name: external spermatic fascia +def: "A thin membrane, prolonged downward around the surface of the spermatic cord and testis. It is separated from the dartos tunic by loose areolar tissue. It is derived from the aponeurosis of the abdominal external oblique muscle." [http://en.wikipedia.org/wiki/External_spermatic_fascia] +synonym: "intercolumnar fascia" RELATED [http://en.wikipedia.org/wiki/External_spermatic_fascia] +synonym: "intercrural fascia" RELATED [http://en.wikipedia.org/wiki/External_spermatic_fascia] +synonym: "Webster's fascia" RELATED [http://en.wikipedia.org/wiki/External_spermatic_fascia] +xref: FMA:69248 +xref: http://en.wikipedia.org/wiki/External_spermatic_fascia +xref: http://www.snomedbrowser.com/Codes/Details/279588002 +is_a: UBERON:0034688 ! spermatic fascia + +[Term] +id: UBERON:0034691 +name: internal spermatic fascia +def: "." [http://en.wikipedia.org/wiki/Internal_spermatic_fascia] +synonym: "infundibuliform fascia" RELATED [http://en.wikipedia.org/wiki/Internal_spermatic_fascia] +xref: FMA:77299 +xref: http://en.wikipedia.org/wiki/Internal_spermatic_fascia +xref: http://www.snomedbrowser.com/Codes/Details/279586003 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0034688 ! spermatic fascia +relationship: part_of UBERON:0001300 ! scrotum + +[Term] +id: UBERON:0034693 +name: cremasteric artery +def: "The cremasteric artery (external spermatic artery) is a branch of the Inferior epigastric artery which accompanies the spermatic cord, and supplies the Cremaster and other coverings of the cord, anastomosing with the testicular artery (internal spermatic artery in older texts). (In the female, the cremesteric artery is very small and accompanies the round ligament.)" [http://en.wikipedia.org/wiki/Cremasteric_artery] +synonym: "cremasteric part of inferior epigastric artery" EXACT [FMA:70192] +synonym: "external spermatic artery" RELATED [http://en.wikipedia.org/wiki/Cremasteric_artery] +xref: Cremasteric:artery +xref: FMA:70192 +xref: http://www.snomedbrowser.com/Codes/Details/279658002 +is_a: UBERON:0004573 ! systemic artery +relationship: branching_part_of UBERON:0001354 {source="FMA"} ! inferior epigastric artery +relationship: part_of UBERON:0001354 {source="FMA"} ! inferior epigastric artery + +[Term] +id: UBERON:0034694 +name: gubernacular bulb, intra-abdominal part +def: "The portion of the gubernacular bulb that is located within the abdomen." [http://orcid.org/0000-0002-6601-2165, ISBN:0123971756] +synonym: "gubernacular cone" RELATED [ISBN:0123971756] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0012326 ! gubernacular bulb + +[Term] +id: UBERON:0034695 +name: gubernacular bulb, extra-abdominal part +def: "The portion of the gubernacular bulb that is located external to the abdomen." [http://orcid.org/0000-0002-6601-2165, ISBN:0123971756] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0012326 ! gubernacular bulb + +[Term] +id: UBERON:0034696 +name: fold of peritoneum +synonym: "peritoneal fold" EXACT [FMA:20610] +synonym: "peritoneal outpouching" NARROW [] +synonym: "peritoneal pouch" RELATED [] +xref: FMA:20610 +xref: http://www.snomedbrowser.com/Codes/Details/261922008 +is_a: UBERON:0002358 ! peritoneum + +[Term] +id: UBERON:0034697 +name: inflow tract +synonym: "cardiac inflow tract" EXACT [] +synonym: "heart inflow tract" EXACT [] +synonym: "venous pole" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/20735616] +xref: FMA:14057 +is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: channel_for UBERON:0000178 ! blood +relationship: channels_from UBERON:0001637 ! artery +relationship: channels_into UBERON:0000948 ! heart +relationship: part_of UBERON:0000948 ! heart + +[Term] +id: UBERON:0034698 +name: inflow tract of ventricle +synonym: "ventricular inflow tract" EXACT [FMA:13224] +xref: FMA:13224 +is_a: UBERON:0034697 ! inflow tract + +[Term] +id: UBERON:0034699 +name: inflow tract of atrium +synonym: "inflow tract of atrium" EXACT [FMA:14140] +xref: FMA:14140 +is_a: UBERON:0034697 ! inflow tract + +[Term] +id: UBERON:0034703 +name: inflow tract of right ventricle +synonym: "inflow part of right ventricle" EXACT [FMA:9552] +synonym: "main part of right ventricle" EXACT [FMA:9552] +synonym: "right ventricle proper" EXACT [FMA:9552] +synonym: "vestibule of tricuspid valve" RELATED [FMA:9552] +xref: FMA:9552 +xref: http://www.snomedbrowser.com/Codes/Details/278950004 +is_a: UBERON:0034698 ! inflow tract of ventricle +intersection_of: UBERON:0034698 ! inflow tract of ventricle +intersection_of: part_of UBERON:0002080 ! heart right ventricle +relationship: part_of UBERON:0002080 ! heart right ventricle + +[Term] +id: UBERON:0034704 +name: inflow tract of left ventricle +synonym: "inflow part of left ventricle" EXACT [FMA:9564] +synonym: "left ventricle proper" EXACT [FMA:9564] +xref: FMA:9564 +xref: http://www.snomedbrowser.com/Codes/Details/278960008 +is_a: UBERON:0034698 ! inflow tract of ventricle +intersection_of: UBERON:0034698 ! inflow tract of ventricle +intersection_of: part_of UBERON:0002084 ! heart left ventricle +relationship: part_of UBERON:0002084 ! heart left ventricle + +[Term] +id: UBERON:0034705 +name: developing neuroepithelium +def: "An embryonic or larval epithelium that is committed to form part of the nervous system." [AEO:0001008, AEO:JB] +synonym: "embryonic neuroepithelium" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "neurepithelium" BROAD [BTO:0000314] +synonym: "neuroepithelium" EXACT [AEO:0001008] +xref: AEO:0001008 +xref: BTO:0000314 +xref: EHDAA2_RETIRED:0004654 +xref: FMA:64807 +is_a: UBERON:0000483 ! epithelium +relationship: part_of UBERON:0001016 ! nervous system + +[Term] +id: UBERON:0034706 +name: proliferating neuroepithelium +def: "An epithelium that is undergoing proliferation to provide large numbers of neuronal cells." [AEO:0001009] +xref: AEO:0001009 +is_a: UBERON:0034705 {source="AEO"} ! developing neuroepithelium + +[Term] +id: UBERON:0034707 +name: differentiating neuroepithelium +def: "A neuroepithelium some of whose cells are undergoing terminal differentiation to become neuronal cells." [AEO:0001010] +xref: AEO:0001010 +is_a: UBERON:0034705 {source="AEO"} ! developing neuroepithelium + +[Term] +id: UBERON:0034708 +name: cerebellum marginal layer +synonym: "marginal zone of cerebellum" EXACT [DHBA:12695] +synonym: "MZCB" RELATED ABBREVIATION [DHBA:12695] +xref: DHBA:12695 +xref: EHDAA2:0001152 +xref: EMAPA:17789 +is_a: UBERON:0034709 ! hindbrain marginal layer +intersection_of: UBERON:0004062 ! neural tube marginal layer +intersection_of: part_of UBERON:0002037 ! cerebellum +relationship: part_of UBERON:0002037 ! cerebellum + +[Term] +id: UBERON:0034709 +name: hindbrain marginal layer +synonym: "marginal zone of hindbrain" EXACT [DHBA:12694] +synonym: "MZH" RELATED ABBREVIATION [DHBA:12694] +xref: DHBA:12694 +xref: EMAPA:32916 +is_a: UBERON:0004062 ! neural tube marginal layer +is_a: UBERON:0011215 ! central nervous system cell part cluster +intersection_of: UBERON:0004062 ! neural tube marginal layer +intersection_of: part_of UBERON:0002028 ! hindbrain +relationship: part_of UBERON:0002028 ! hindbrain + +[Term] +id: UBERON:0034710 +name: spinal cord ventricular layer +synonym: "spinal cord lateral wall ventricular layer" EXACT [EHDAA2:0001267] +xref: EHDAA2:0001267 +xref: EMAPA:17585 +is_a: UBERON:0004060 ! neural tube ventricular layer +intersection_of: UBERON:0004060 ! neural tube ventricular layer +intersection_of: part_of UBERON:0006241 ! future spinal cord +relationship: part_of UBERON:0005496 {source="EHDAA2"} ! neural tube lateral wall +relationship: part_of UBERON:0006241 ! future spinal cord + +[Term] +id: UBERON:0034711 +name: cortical preplate +def: "The layer of the developing cerebral cortex that is formed from the first cohort of neurons to migrate out of the cortical ventricular zone; split by the second wave into marginal zone and subplate." [http://www.ncbi.nlm.nih.gov/pubmed/12626695] +xref: EMAPA:35261 +is_a: UBERON:0014950 ! layer of developing cerebral cortex + +[Term] +id: UBERON:0034712 +name: yellow fibrocartilage +def: "fibrocartilage containing bundles of yellow elastic fibers but with little or no white fibrous tissue." [http://www.ufrgs.br/imunovet/molecular_immunology/muscles.html] +xref: http://www.snomedbrowser.com/Codes/Details/1456008 +is_a: UBERON:0001995 {source="cjm"} ! fibrocartilage + +[Term] +id: UBERON:0034713 +name: cranial neuron projection bundle +def: "Any of the cranial nerves, or their central nervous system analogs (the optic tract, the epiphyseal tract). These analogs are not true nerves, and are instead evaginated sensory afferents emanating from the brain" [http://orcid.org/0000-0002-6601-2165, ISBN:0471888893] +synonym: "cranial nerve fiber bundle" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "cranial nerve fiber tract" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "cranial nerve or tract" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "neuron projection bundle from brain" RELATED [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0000122 ! neuron projection bundle +relationship: extends_fibers_into UBERON:0000955 ! brain +relationship: in_lateral_side_of UBERON:0000033 ! head +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0034714 +name: epiphyseal tract +def: "A cranial nerve fiber tract that innervates the parietal eye." [ISBN:0471888893] +comment: This should be classified as an evaginated sensory afferents rather than cranial nerves, as they are part of the CNS[ISBN:0471888893] +synonym: "epiphyseal nerve" RELATED [ISBN:0471888893] +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0034713 ! cranial neuron projection bundle +intersection_of: UBERON:0034713 ! cranial neuron projection bundle +intersection_of: innervates UBERON:0004869 ! parietal organ +relationship: extends_fibers_into UBERON:0001899 ! epithalamus +relationship: innervates UBERON:0004869 ! parietal organ + +[Term] +id: UBERON:0034715 +name: pineal tract +def: "A cranial nerve fiber tract that innervates the pineal body." [ISBN:0471888893] +comment: This should be classified as an evaginated sensory afferents rather than cranial nerves, as they are part of the CNS[ISBN:0471888893] +synonym: "pineal nerve" RELATED [ISBN:0471888893] +xref: FMA:77600 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0034713 ! cranial neuron projection bundle +intersection_of: UBERON:0034713 ! cranial neuron projection bundle +intersection_of: innervates UBERON:0001905 ! pineal body +relationship: branching_part_of UBERON:0034714 ! epiphyseal tract +relationship: extends_fibers_into UBERON:0001899 ! epithalamus +relationship: innervates UBERON:0001905 ! pineal body +relationship: part_of UBERON:0034714 ! epiphyseal tract + +[Term] +id: UBERON:0034716 +name: rostral epiphyseal tract +def: "The more rostral of the two branches of the epiphyseal tract." [ISBN:0471888893] +synonym: "rostral epiphyseal nerve" RELATED [ISBN:0471888893] +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0034713 ! cranial neuron projection bundle +relationship: branching_part_of UBERON:0034714 ! epiphyseal tract +relationship: part_of UBERON:0034714 ! epiphyseal tract + +[Term] +id: UBERON:0034717 +name: integumental taste bud +def: "A taste bud that is located external to the digestive tube, on the head or body, as found in species such as goldfish." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/11921337] +is_a: UBERON:0001727 ! taste bud +intersection_of: UBERON:0001727 ! taste bud +intersection_of: part_of UBERON:0002416 ! integumental system +relationship: part_of UBERON:0002416 ! integumental system + +[Term] +id: UBERON:0034718 +name: barbel taste bud +def: "A taste bud that is located on a barbel." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/11921337] +is_a: UBERON:0034717 ! integumental taste bud +intersection_of: UBERON:0001727 ! taste bud +intersection_of: part_of UBERON:2000622 ! barbel +relationship: part_of UBERON:2000622 ! barbel + +[Term] +id: UBERON:0034719 +name: lip taste bud +def: "A taste bud that is located on a lip." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/11921337] +is_a: UBERON:0013765 ! digestive system element +is_a: UBERON:0034717 ! integumental taste bud +intersection_of: UBERON:0001727 ! taste bud +intersection_of: part_of UBERON:0001833 ! lip +relationship: part_of UBERON:0001833 ! lip +relationship: present_in_taxon NCBITaxon:32443 + +[Term] +id: UBERON:0034720 +name: head taste bud +def: "A taste bud that is located on the skin of the head." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0034717 ! integumental taste bud +intersection_of: UBERON:0001727 ! taste bud +intersection_of: part_of UBERON:0001084 ! skin of head +relationship: part_of UBERON:0001084 ! skin of head + +[Term] +id: UBERON:0034721 +name: pharyngeal taste bud +def: "A taste bud that is located in the pharynx." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0001727 ! taste bud +is_a: UBERON:0013765 ! digestive system element +intersection_of: UBERON:0001727 ! taste bud +intersection_of: part_of UBERON:0006562 ! pharynx +relationship: part_of UBERON:0000355 ! pharyngeal mucosa +relationship: present_in_taxon NCBITaxon:7778 + +[Term] +id: UBERON:0034722 +name: mouth roof taste bud +def: "A taste bud that is located on the roof of the mouth." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0001727 ! taste bud +intersection_of: UBERON:0001727 ! taste bud +intersection_of: part_of UBERON:0007375 ! roof of mouth +relationship: part_of UBERON:0007375 ! roof of mouth +relationship: present_in_taxon NCBITaxon:7778 + +[Term] +id: UBERON:0034723 +name: fin taste bud +def: "A taste bud that is located on a fin." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0001727 ! taste bud +intersection_of: UBERON:0001727 ! taste bud +intersection_of: part_of UBERON:0008897 ! fin +relationship: part_of UBERON:0008897 ! fin +relationship: present_in_taxon NCBITaxon:32443 + +[Term] +id: UBERON:0034724 +name: esophageal taste bud +def: "A taste bud that is located in the esophagus." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0001727 ! taste bud +is_a: UBERON:0005181 ! thoracic segment organ +is_a: UBERON:0013765 ! digestive system element +intersection_of: UBERON:0001727 ! taste bud +intersection_of: part_of UBERON:0001043 ! esophagus +relationship: part_of UBERON:0001043 ! esophagus +relationship: present_in_taxon NCBITaxon:32443 + +[Term] +id: UBERON:0034725 +name: pterygopalatine nerve +def: "The pharyngeal nerve (pterygopalatine nerve) is a small branch arising from the posterior part of the pterygopalatine ganglion. It passes through the pharyngeal canal with the pharyngeal branch of the maxillary artery, and is distributed to the mucous membrane of the nasal part of the pharynx, behind the auditory tube." [http://en.wikipedia.org/wiki/Pharyngeal_nerve] +synonym: "ganglionic branch of maxillary nerve to pterygopalatine ganglion" EXACT [FMA:52731] +synonym: "pharyngeal nerve" RELATED [http://en.wikipedia.org/wiki/Pharyngeal_nerve] +synonym: "pterygopalatine nerve" EXACT [FMA:52731] +synonym: "radix sensoria ganglii pterygopalatini" EXACT [FMA:TA] +synonym: "sensory root of pterygopalatine ganglion" EXACT [FMA:52731] +xref: FMA:52731 +xref: http://www.snomedbrowser.com/Codes/Details/58267004 +xref: Pharyngeal:nerve +is_a: UBERON:0011779 ! nerve of head region +relationship: branching_part_of UBERON:0000377 {source="FMA"} ! maxillary nerve +relationship: part_of UBERON:0000377 ! maxillary nerve + +[Term] +id: UBERON:0034726 +name: trunk taste bud +def: "A taste bud that is located on the skin of the trunk." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005177 ! trunk region element +is_a: UBERON:0034717 ! integumental taste bud +intersection_of: UBERON:0001727 ! taste bud +intersection_of: part_of UBERON:0001085 ! skin of trunk +relationship: part_of UBERON:0001085 ! skin of trunk + +[Term] +id: UBERON:0034727 +name: vestibular bulb artery +def: "The artery of bulb of vestibule is a branch of the internal pudendal artery." [http://en.wikipedia.org/wiki/Artery_of_bulb_of_vestibule] +synonym: "arteria bulbi vestibuli" EXACT LATIN [FMA:TA] +synonym: "artery of bulb of vestibule" EXACT [FMA:20900] +xref: FMA:20900 +xref: http://en.wikipedia.org/wiki/Artery_of_bulb_of_vestibule +xref: http://www.snomedbrowser.com/Codes/Details/293541004 +is_a: UBERON:0003835 ! abdominal segment blood vessel +is_a: UBERON:0004573 ! systemic artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0013129 ! bulb of vestibule +relationship: branching_part_of UBERON:0007315 {source="FMA"} ! internal pudendal artery +relationship: part_of UBERON:0007315 ! internal pudendal artery +relationship: supplies UBERON:0013129 ! bulb of vestibule + +[Term] +id: UBERON:0034728 +name: autonomic nerve +def: "The autonomic nerve is a small nerve which carries postganglionic sympathetic and parasympathetic neurons from the zygomaticotemporal nerve; a branch of the maxillary nerve, to the lacrimal nerve; a branch of the ophthalmic nerve. These neurons derive from the superior cervical ganglion and the pterygopalatine ganglion respectively. They will travel to the lacrimal gland via the lacrimal nerve. Parasympathetic will induce lacrimation and vice versa." [http://en.wikipedia.org/wiki/Autonomic_nerve] +synonym: "nervus visceralis" EXACT [FMA:5866] +synonym: "visceral nerve" EXACT [FMA:5866] +xref: Autonomic:nerve +xref: EMAPA:37957 {source="MA:th"} +xref: FMA:5866 +xref: http://www.snomedbrowser.com/Codes/Details/276145003 +xref: MESH:D017776 +is_a: UBERON:0011779 ! nerve of head region +relationship: branching_part_of UBERON:0036264 ! zygomaticotemporal nerve +relationship: extends_fibers_into UBERON:0001805 ! autonomic ganglion +relationship: part_of UBERON:0002410 ! autonomic nervous system +relationship: part_of UBERON:0036264 ! zygomaticotemporal nerve + +[Term] +id: UBERON:0034729 +name: sympathetic nerve +xref: EMAPA:37958 {source="MA:th"} +xref: http://www.snomedbrowser.com/Codes/Details/181098007 +is_a: UBERON:0001021 ! nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: part_of UBERON:0000013 ! sympathetic nervous system +relationship: extends_fibers_into UBERON:0001806 ! sympathetic ganglion +relationship: part_of UBERON:0000013 ! sympathetic nervous system + +[Term] +id: UBERON:0034730 +name: olfactory tract linking bulb to ipsilateral dorsal telencephalon +synonym: "lateral olfactory tract" RELATED [ZFA:0000229] +synonym: "tractus olfactorius lateralis" RELATED [ZFA:0000229] +xref: TAO:0000229 +xref: ZFA:0000229 +is_a: UBERON:0002265 ! olfactory tract + +[Term] +id: UBERON:0034734 +name: medial olfactory stria +def: "The medial olfactory stria turns medialward behind the parolfactory area and ends in the subcallosal gyrus; in some cases a small intermediate stria is seen running backward to the anterior perforated substance." [http://en.wikipedia.org/wiki/Medial_olfactory_stria] +synonym: "medial olfactory tract" RELATED [NeuroNames:2278] +synonym: "stria olfactoria medialis" EXACT LATIN [FMA:77627, FMA:TA] +synonym: "tractus olfactorius medialis" RELATED LATIN [NeuroNames:2278] +xref: DHBA:12076 +xref: DMBA:17779 +xref: FMA:77627 +xref: HBA:265505518 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2278 +xref: http://en.wikipedia.org/wiki/Medial_olfactory_stria +xref: http://www.snomedbrowser.com/Codes/Details/369105009 +is_a: UBERON:0013199 {source="FMA"} ! stria of neuraxis +disjoint_from: UBERON:2000238 ! olfactory tract linking bulb to ipsilateral ventral telencephalon + +[Term] +id: UBERON:0034735 +name: oviduct albumen gland +def: "A gland in the glandular region of the oviduct that secretes albumen over the ovum. In birds there are two regions of the oviduct, the first secretes a thin chalaziferous albumen layer, the second secretes a thicker albumen layer." [ISBN:978-0226870137] +xref: BTO:0000054 +is_a: UBERON:0005398 ! female reproductive gland +relationship: part_of UBERON:0000993 ! oviduct + +[Term] +id: UBERON:0034736 +name: coracoclavicular ligament +def: "Any ligament that connects the coracoid process with the clavicle" [http://orcid.org/0000-0002-6601-2165] +synonym: "accessory ligament of acromioclavicular joint" EXACT [FMA:26029] +xref: Coracoclavicular:ligament +xref: FMA:26029 +xref: http://www.snomedbrowser.com/Codes/Details/361899005 +is_a: UBERON:0008846 ! skeletal ligament +intersection_of: UBERON:0008846 ! skeletal ligament +intersection_of: connects UBERON:0001105 ! clavicle bone +intersection_of: connects UBERON:0006633 ! coracoid process of scapula +relationship: connects UBERON:0001105 ! clavicle bone +relationship: connects UBERON:0006633 ! coracoid process of scapula +relationship: part_of UBERON:0003692 {source="FMA"} ! acromioclavicular joint + +[Term] +id: UBERON:0034743 +name: inferior longitudinal fasciculus +def: "The inferior longitudinal fasciculus connects the temporal lobe and occipital lobe, running along the lateral walls of the inferior and posterior cornua of the lateral ventricle. The existence of this fasciculus independent from the occipitotemporal fasciculus has been questioned for the human being, such that it has been proposed that the term inferior longitudinal fasciculus be replaced by the term \"occipitotemporal projection\"." [http://en.wikipedia.org/wiki/Inferior_longitudinal_fasciculus] +synonym: "external sagittal stratum" RELATED [NeuroNames:1443] +synonym: "fasciculus fronto-occipitalis inferior" RELATED LATIN [NeuroNames:1443] +synonym: "fasciculus longitudinalis inferior" RELATED LATIN [NeuroNames:1443] +synonym: "ilf" RELATED ABBREVIATION [DHBA:10580] +xref: DHBA:10580 +xref: FMA:77632 +xref: HBA:9260 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1443 +xref: http://en.wikipedia.org/wiki/Inferior_longitudinal_fasciculus +xref: http://www.snomedbrowser.com/Codes/Details/369085008 +xref: NeuroNamesCNID:538 +is_a: UBERON:0022248 ! cerebral nerve fasciculus +relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon +relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts + +[Term] +id: UBERON:0034745 +name: radiation of thalamus +synonym: "thalamic radiation" RELATED [FMA:76975] +synonym: "thalamus radiation" EXACT [FMA:76975] +xref: FMA:76975 +is_a: UBERON:0003931 ! diencephalic white matter +is_a: UBERON:0022259 ! white matter radiation +intersection_of: UBERON:0022259 ! white matter radiation +intersection_of: part_of UBERON:0001897 ! dorsal plus ventral thalamus +relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus + +[Term] +id: UBERON:0034746 +name: anterior thalamic radiation +synonym: "anterior radiation of thalamus" EXACT [FMA:76976] +synonym: "anterior thalamic radiation" EXACT [FMA:76976] +synonym: "anterior thalamic radiation" RELATED [NeuroNames:1726] +synonym: "anterior thalamic radiations" RELATED [NeuroNames:1726] +synonym: "athf" RELATED ABBREVIATION [DHBA:12043] +synonym: "radiatio thalami anterior" EXACT [FMA:TA] +synonym: "radiationes thalamicae anteriores" RELATED LATIN [NeuroNames:1726] +xref: DHBA:12043 +xref: FMA:76976 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1726 +is_a: UBERON:0022260 ! radiation of cerebral hemisphere +is_a: UBERON:0034745 ! radiation of thalamus +disjoint_from: UBERON:0034747 {source="lexical"} ! posterior thalamic radiation +relationship: part_of UBERON:0014526 {source="DHBA"} ! anterior limb of internal capsule + +[Term] +id: UBERON:0034747 +name: posterior thalamic radiation +synonym: "posterior thalamic radiation" EXACT [FMA:76982] +synonym: "posterior thalamic radiation" RELATED [NeuroNames:2083] +synonym: "posterior thalamic radiations" RELATED [NeuroNames:2083] +synonym: "pthr" RELATED ABBREVIATION [DHBA:12053] +synonym: "radiatio posterior thalami" EXACT [FMA:TA] +synonym: "radiatio thalamica posterior" EXACT [FMA:TA] +synonym: "radiationes thalamicae posteriores" RELATED LATIN [NeuroNames:2083] +xref: DHBA:12053 +xref: FMA:76982 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2083 +is_a: UBERON:0022260 ! radiation of cerebral hemisphere +is_a: UBERON:0034745 ! radiation of thalamus +relationship: part_of UBERON:0034749 ! retrolenticular part of internal capsule + +[Term] +id: UBERON:0034749 +name: retrolenticular part of internal capsule +synonym: "pars retrolenticularis capsulae internae" RELATED LATIN [NeuroNames:203] +synonym: "pars retrolentiformis" EXACT [FMA:TA] +synonym: "pars retrolentiformis (capsulae internae)" RELATED LATIN [NeuroNames:203] +synonym: "postlenticular portion of internal capsule" EXACT [FMA:61957] +synonym: "postlenticular portion of internal capsule" RELATED [NeuroNames:203] +synonym: "retrolenticular limb" EXACT [FMA:61957] +synonym: "retrolenticular part of internal capsule" RELATED [NeuroNames:203] +synonym: "retrolenticular part of the internal capsule" RELATED [NeuroNames:203] +synonym: "retrolentiform limb" EXACT [FMA:61957] +xref: DHBA:12052 +xref: FMA:61957 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=203 +xref: http://www.snomedbrowser.com/Codes/Details/362363008 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0014527 {source="DHBA", source="FMA"} ! posterior limb of internal capsule + +[Term] +id: UBERON:0034750 +name: visual association cortex +def: "Part of cortex considered to function in higher level visual functions" [NLX:143553] +synonym: "visual association area" RELATED [http://en.wikipedia.org/wiki/Visual_cortex] +synonym: "visual association cortex" RELATED [http://en.wikipedia.org/wiki/Visual_cortex] +xref: NLX:143553 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0035015 ! association cortex +intersection_of: UBERON:0035015 ! association cortex +intersection_of: part_of UBERON:0000411 ! visual cortex +relationship: part_of UBERON:0000411 ! visual cortex + +[Term] +id: UBERON:0034751 +name: primary auditory cortex +def: "The part of the auditory cortex that is located on the superior temporal gyrus in the temporal lobe and receives point-to-point input from the ventral division of the medial geniculate complex." [http://www.ncbi.nlm.nih.gov/books/NBK10900/] +synonym: "A1C" RELATED ABBREVIATION [DHBA:10236] +synonym: "auditory complex area A1" RELATED [NCBIBook:NBK10900] +synonym: "auditory core region" RELATED [NeuroNames:1354] +synonym: "primary auditory area" RELATED [NeuroNames:1354] +synonym: "primary auditory cortex" RELATED [NeuroNames:1354] +synonym: "primary auditory cortex (core)" EXACT [DHBA:10236] +xref: DHBA:10236 +xref: FMA:272953 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1354 +xref: http://en.wikipedia.org/wiki/Primary_auditory_cortex +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001393 {source="cjm"} ! auditory cortex + +[Term] +id: UBERON:0034752 +name: secondary auditory cortex +def: "The part of the auditory cortex that receive more diffuse input from the belt areas of the medial geniculate complex." [http://www.ncbi.nlm.nih.gov/books/NBK10900/] +synonym: "A42" RELATED ABBREVIATION [DHBA:10239] +synonym: "belt area of auditory complex" RELATED [NCBIBook:NBK10900] +synonym: "belt auditory area" EXACT [FMA:272944] +synonym: "peripheral auditory cortex" EXACT [FMA:272944] +synonym: "second auditory area" EXACT [NeuroNames:1557] +synonym: "second auditory area" RELATED [NeuroNames:1557] +synonym: "second auditory cortex" RELATED [NeuroNames:1557] +synonym: "secondary auditory cortex (belt, area 42)" EXACT [DHBA:10239] +xref: DHBA:10239 +xref: FMA:272944 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1557 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +disjoint_from: UBERON:0035927 ! sulcus of parietal lobe +relationship: part_of UBERON:0001393 {source="cjm"} ! auditory cortex + +[Term] +id: UBERON:0034753 +name: inferior occipitofrontal fasciculus +synonym: "fasciculus occipito-frontalis inferior" RELATED LATIN [NeuroNames:1442] +synonym: "fasciculus occipitofrontalis inferior" RELATED LATIN [NeuroNames:1442] +synonym: "inferior fronto-occipital fasciculus" RELATED [NeuroNames:1442] +synonym: "inferior occipitofrontal fasciculus" EXACT [DHBA:12070] +synonym: "inferior occipitofrontal fasciculus" RELATED [NeuroNames:1442] +xref: DHBA:12070 +xref: FMA:77633 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1442 +xref: http://www.snomedbrowser.com/Codes/Details/369087000 +is_a: UBERON:0034754 ! occipitofrontal fasciculus + +[Term] +id: UBERON:0034754 +name: occipitofrontal fasciculus +def: "The occipitofrontal fasciculus passes backward from the frontal lobe, along the lateral border of the caudate nucleus, and on the medial aspect of the corona radiata; its fibers radiate in a fan-like manner and pass into the occipital and temporal lobes lateral to the posterior and inferior cornua." [http://en.wikipedia.org/wiki/Occipitofrontal_fasciculus] +synonym: "inferior occipitofrontal fasciculus" RELATED [http://en.wikipedia.org/wiki/Occipitofrontal_fasciculus] +synonym: "off" RELATED ABBREVIATION [DHBA:10588] +xref: DHBA:10588 +xref: HBA:9269 +xref: Occipitofrontal:fasciculus +is_a: UBERON:0022248 ! cerebral nerve fasciculus +relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon +relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts + +[Term] +id: UBERON:0034762 +name: areolar sweat gland +def: "Any sweat gland that is part of an areola" [http://orcid.org/0000-0002-6601-2165] +synonym: "areolar aprocine sweat gland" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "sweat gland of areola" EXACT [FMA:62149] +xref: FMA:62149 +is_a: UBERON:0000382 {source="FMA"} ! apocrine sweat gland +intersection_of: UBERON:0001820 ! sweat gland +intersection_of: part_of UBERON:0002032 ! areola +relationship: part_of UBERON:0002032 ! areola + +[Term] +id: UBERON:0034763 +name: hindbrain commissure +def: "Any commissure within the hindbrain." [http://orcid.org/0000-0002-6601-2165, ZFIN:ZDB-PUB-090417-11] +xref: TAO:0002199 +xref: ZFA:0001692 +is_a: UBERON:0005970 ! brain commissure +intersection_of: UBERON:0001020 ! nervous system commissure +intersection_of: part_of UBERON:0002028 ! hindbrain +relationship: part_of UBERON:0002028 ! hindbrain + +[Term] +id: UBERON:0034764 +name: remnant of cardiac valve +synonym: "vestigial cardiac valve" EXACT [FMA:14153] +xref: FMA:14153 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0006590 ! remnant of embryonic structure +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0006590 ! remnant of embryonic structure +intersection_of: transformation_of UBERON:0000946 ! cardial valve +relationship: develops_from UBERON:0000946 ! cardial valve +relationship: transformation_of UBERON:0000946 ! cardial valve + +[Term] +id: UBERON:0034765 +name: glabella skin +def: "The zone of skin that overlaps with the glabella region." [http://en.wikipedia.org/wiki/Glabella, http://orcid.org/0000-0002-6601-2165] +synonym: "glabella" BROAD [] +xref: http://www.snomedbrowser.com/Codes/Details/244083007 +is_a: UBERON:0016475 ! skin of forehead +relationship: part_of UBERON:0034766 ! glabella region + +[Term] +id: UBERON:0034766 +name: glabella region +def: "A region of the forehead corresponding to the space between the eyebrows and above the nose." [http://en.wikipedia.org/wiki/Glabella, http://orcid.org/0000-0002-6601-2165] +synonym: "glabella" NARROW [] +xref: http://en.wikipedia.org/wiki/Glabella +is_a: UBERON:0001444 ! subdivision of head +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: has_part UBERON:0016440 ! glabella region of bone +relationship: has_part UBERON:0034765 ! glabella skin +relationship: part_of UBERON:0008200 ! forehead + +[Term] +id: UBERON:0034767 +name: buccal vestibule +def: "The buccal vestibule is the space external to teeth and gums and internal to lips and cheeks. The proportion of its walls formed by the lips varies according to species depending upon their feeding action. The horse like most herbivores has a relatively small opening. PPP The buccal vestibule opens to the outside rostrally via a U shaped slit the oral fissure. PPP When the mouth is closed the buccal vestibule and the mouth cavity proper connect via spaces between and behind the teeth. These allow free communication between the two sides of the vestibule. PPP Several salivary ducts open into the dorso caudal part of the vestibule: PPP Parotid gland - opens into the cheek on the small parotid papilla, opposite to the caudal part of upper 4 th premolar teeth PPP Zygomatic gland - the main duct opens in the caudal part of the upper 1 st molar tooth on a small papilla near the vestibular fornix PPP Submucous glands - minimal in number, confined to the lower lip and adjacent part of the cheek. Secretion occurs through about 10 openings located near the fornix of the vestibule." [MURDOCH:240] +xref: FMA:289320 +xref: MURDOCH:240 +is_a: UBERON:0000464 ! anatomical space +relationship: adjacent_to UBERON:0001833 ! lip +relationship: adjacent_to UBERON:0006956 ! buccal mucosa +relationship: adjacent_to UBERON:0011595 ! jaw region +relationship: part_of UBERON:0000165 ! mouth + +[Term] +id: UBERON:0034768 +name: morphological feature +def: "A part of an organism or organ that is continuous with its surroundings and distinguished from its surroundings based on morphology." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0000061 ! anatomical structure +relationship: part_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0034769 +name: lymphomyeloid tissue +xref: FMA:79770 +xref: NCIT:C41168 +is_a: UBERON:0015757 {source="FMA"} ! heterogeneous tissue + +[Term] +id: UBERON:0034770 +name: bulbourethral gland epithelium +synonym: "epithelium of bulbourethral gland" EXACT [] +synonym: "epithelium of bulbourethral gland of male" EXACT [EMAPA:29790] +xref: EMAPA:29790 +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0016510 ! epithelium of male urethra +is_a: UBERON:0034969 ! epithelial layer of duct +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002366 ! bulbo-urethral gland +relationship: part_of UBERON:0002366 ! bulbo-urethral gland + +[Term] +id: UBERON:0034771 +name: ventral commissural nucleus of spinal cord +def: "The term commissural nucleus of the spinal cord refers to a group of cells in the medial portion of the anterior gray column; it corresponds roughly to lamina VIII" [NeuroNames:1658] +synonym: "commissural nucleus of spinal cord" BROAD [FMA:73900] +synonym: "commissural nucleus of spinal cord" EXACT [FMA:73900] +synonym: "commissural nucleus of spinal cord" RELATED [FMA:73900] +synonym: "lamina VIII" RELATED [] +xref: FMA:73900 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1658 +is_a: UBERON:0011777 ! nucleus of spinal cord +relationship: part_of UBERON:0002257 ! ventral horn of spinal cord + +[Term] +id: UBERON:0034772 +name: margin of eyelid +def: "the confluence of the mucosal surface of the conjunctiva, the edge of the orbicularis, and the cutaneous epithelium." [MGI:anna] +synonym: "free margin of eyelid" EXACT [] +xref: EMAPA:37905 {source="MA:th"} +xref: FMA:59356 +xref: http://www.snomedbrowser.com/Codes/Details/362527007 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0034921 ! multi organ part structure +relationship: part_of UBERON:0001711 ! eyelid + +[Term] +id: UBERON:0034773 +name: uncus of parahippocampal gyrus +def: "The anterior extremity of the Parahippocampal gyrus is recurved in the form of a hook, the uncus, which is separated from the apex of the temporal lobe by a slight fissure, the incisura temporalis. Although superficially continuous with the hippocampal gyrus, the uncus forms morphologically a part of the rhinencephalon. The term uncus was coined by Felix Vicq dbAzyr (1748b1794)." [http://en.wikipedia.org/wiki/Uncus] +synonym: "pyriform area (Crosby)" RELATED [NeuroNames:40] +synonym: "uncus" RELATED LATIN [NeuroNames:40] +synonym: "uncus hippocampi" EXACT LATIN [NeuroNames:40] +xref: DHBA:12165 +xref: FMA:74884 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=40 +xref: http://en.wikipedia.org/wiki/Uncus +xref: http://www.snomedbrowser.com/Codes/Details/279213004 +xref: NCIT:C33831 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002973 {source="DHBA"} ! parahippocampal gyrus + +[Term] +id: UBERON:0034774 +name: uncal CA1 +synonym: "CA1U" RELATED ABBREVIATION [DHBA:266441267] +xref: DHBA:266441267 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus + +[Term] +id: UBERON:0034775 +name: uncal CA2 +synonym: "CA2U" RELATED ABBREVIATION [DHBA:266441311] +xref: DHBA:266441311 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus + +[Term] +id: UBERON:0034776 +name: uncal CA3 +synonym: "CA3U" RELATED ABBREVIATION [DHBA:266441355] +xref: DHBA:266441355 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus + +[Term] +id: UBERON:0034777 +name: rostral CA1 +synonym: "CA1R" RELATED ABBREVIATION [DHBA:11275] +xref: DHBA:11275 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus + +[Term] +id: UBERON:0034778 +name: rostral CA2 +synonym: "CA2R" RELATED ABBREVIATION [DHBA:11285] +xref: DHBA:11285 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus + +[Term] +id: UBERON:0034779 +name: rostral CA3 +synonym: "CA3R" RELATED ABBREVIATION [DHBA:11295] +xref: DHBA:11295 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus + +[Term] +id: UBERON:0034780 +name: caudal CA1 +synonym: "CA1C" RELATED ABBREVIATION [DHBA:11280] +xref: DHBA:11280 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus + +[Term] +id: UBERON:0034781 +name: caudal CA2 +synonym: "CA2C" RELATED ABBREVIATION [DHBA:11290] +xref: DHBA:11290 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus + +[Term] +id: UBERON:0034782 +name: caudal CA3 +synonym: "CA3C" RELATED ABBREVIATION [DHBA:11301] +xref: DHBA:11301 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus + +[Term] +id: UBERON:0034798 +name: stratum lacunosum-moleculare of caudal CA1 +synonym: "CA1Cslm" RELATED ABBREVIATION [DHBA:11281] +xref: DHBA:11281 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare +intersection_of: part_of UBERON:0034780 ! caudal CA1 +relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare +relationship: part_of UBERON:0034780 ! caudal CA1 + +[Term] +id: UBERON:0034799 +name: stratum radiatum of caudal CA1 +synonym: "CA1Csr" RELATED ABBREVIATION [DHBA:11282] +xref: DHBA:11282 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0005372 ! hippocampus stratum radiatum +intersection_of: part_of UBERON:0034780 ! caudal CA1 +relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum +relationship: part_of UBERON:0034780 ! caudal CA1 + +[Term] +id: UBERON:0034800 +name: stratum pyramidale of caudal CA1 +synonym: "CA1Csp" RELATED ABBREVIATION [DHBA:11283] +xref: DHBA:11283 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0002313 ! hippocampus pyramidal layer +intersection_of: part_of UBERON:0034780 ! caudal CA1 +relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer +relationship: part_of UBERON:0034780 ! caudal CA1 + +[Term] +id: UBERON:0034801 +name: stratum oriens of caudal CA1 +synonym: "CA1Cso" RELATED ABBREVIATION [DHBA:11284] +xref: DHBA:11284 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0005371 ! hippocampus stratum oriens +intersection_of: part_of UBERON:0034780 ! caudal CA1 +relationship: part_of UBERON:0005371 ! hippocampus stratum oriens +relationship: part_of UBERON:0034780 ! caudal CA1 + +[Term] +id: UBERON:0034803 +name: stratum lacunosum-moleculare of caudal CA2 +synonym: "CA2Cslm" RELATED ABBREVIATION [DHBA:11291] +xref: DHBA:11291 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare +intersection_of: part_of UBERON:0034781 ! caudal CA2 +relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare +relationship: part_of UBERON:0034781 ! caudal CA2 + +[Term] +id: UBERON:0034804 +name: stratum radiatum of caudal CA2 +synonym: "CA2Csr" RELATED ABBREVIATION [DHBA:11292] +xref: DHBA:11292 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0005372 ! hippocampus stratum radiatum +intersection_of: part_of UBERON:0034781 ! caudal CA2 +relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum +relationship: part_of UBERON:0034781 ! caudal CA2 + +[Term] +id: UBERON:0034805 +name: stratum pyramidale of caudal CA2 +synonym: "CA2Csp" RELATED ABBREVIATION [DHBA:11293] +xref: DHBA:11293 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0002313 ! hippocampus pyramidal layer +intersection_of: part_of UBERON:0034781 ! caudal CA2 +relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer +relationship: part_of UBERON:0034781 ! caudal CA2 + +[Term] +id: UBERON:0034806 +name: stratum oriens of caudal CA2 +synonym: "CA2Cso" RELATED ABBREVIATION [DHBA:11294] +xref: DHBA:11294 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0005371 ! hippocampus stratum oriens +intersection_of: part_of UBERON:0034781 ! caudal CA2 +relationship: part_of UBERON:0005371 ! hippocampus stratum oriens +relationship: part_of UBERON:0034781 ! caudal CA2 + +[Term] +id: UBERON:0034808 +name: stratum lacunosum-moleculare of caudal CA3 +synonym: "CA3Cslm" RELATED ABBREVIATION [DHBA:11302] +xref: DHBA:11302 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare +intersection_of: part_of UBERON:0034782 ! caudal CA3 +relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare +relationship: part_of UBERON:0034782 ! caudal CA3 + +[Term] +id: UBERON:0034809 +name: stratum radiatum of caudal CA3 +synonym: "CA3Csr" RELATED ABBREVIATION [DHBA:11303] +xref: DHBA:11303 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0005372 ! hippocampus stratum radiatum +intersection_of: part_of UBERON:0034782 ! caudal CA3 +relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum +relationship: part_of UBERON:0034782 ! caudal CA3 + +[Term] +id: UBERON:0034810 +name: stratum lucidum of caudal CA3 +synonym: "CA3Csl" RELATED ABBREVIATION [DHBA:11304] +xref: DHBA:11304 +is_a: UBERON:0014560 ! CA3 stratum lucidum +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0007637 ! hippocampus stratum lucidum +intersection_of: part_of UBERON:0034782 ! caudal CA3 +relationship: part_of UBERON:0034782 ! caudal CA3 + +[Term] +id: UBERON:0034811 +name: stratum pyramidale of caudal CA3 +synonym: "CA3Csp" RELATED ABBREVIATION [DHBA:11305] +xref: DHBA:11305 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0002313 ! hippocampus pyramidal layer +intersection_of: part_of UBERON:0034782 ! caudal CA3 +relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer +relationship: part_of UBERON:0034782 ! caudal CA3 + +[Term] +id: UBERON:0034812 +name: stratum oriens of caudal CA3 +synonym: "CA3Cso" RELATED ABBREVIATION [DHBA:11306] +xref: DHBA:11306 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0005371 ! hippocampus stratum oriens +intersection_of: part_of UBERON:0034782 ! caudal CA3 +relationship: part_of UBERON:0005371 ! hippocampus stratum oriens +relationship: part_of UBERON:0034782 ! caudal CA3 + +[Term] +id: UBERON:0034828 +name: stratum lacunosum-moleculare of rostral CA1 +synonym: "CA1Rslm" RELATED ABBREVIATION [DHBA:11276] +xref: DHBA:11276 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare +intersection_of: part_of UBERON:0034777 ! rostral CA1 +relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare +relationship: part_of UBERON:0034777 ! rostral CA1 + +[Term] +id: UBERON:0034829 +name: stratum radiatum of rostral CA1 +synonym: "CA1Rsr" RELATED ABBREVIATION [DHBA:11277] +xref: DHBA:11277 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0005372 ! hippocampus stratum radiatum +intersection_of: part_of UBERON:0034777 ! rostral CA1 +relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum +relationship: part_of UBERON:0034777 ! rostral CA1 + +[Term] +id: UBERON:0034830 +name: stratum pyramidale of rostral CA1 +synonym: "CA1Rsp" RELATED ABBREVIATION [DHBA:11278] +xref: DHBA:11278 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0002313 ! hippocampus pyramidal layer +intersection_of: part_of UBERON:0034777 ! rostral CA1 +relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer +relationship: part_of UBERON:0034777 ! rostral CA1 + +[Term] +id: UBERON:0034831 +name: stratum oriens of rostral CA1 +synonym: "CA1Rso" RELATED ABBREVIATION [DHBA:11279] +xref: DHBA:11279 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0005371 ! hippocampus stratum oriens +intersection_of: part_of UBERON:0034777 ! rostral CA1 +relationship: part_of UBERON:0005371 ! hippocampus stratum oriens +relationship: part_of UBERON:0034777 ! rostral CA1 + +[Term] +id: UBERON:0034833 +name: stratum lacunosum-moleculare of rostral CA2 +synonym: "CA2Rslm" RELATED ABBREVIATION [DHBA:11286] +xref: DHBA:11286 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare +intersection_of: part_of UBERON:0034778 ! rostral CA2 +relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare +relationship: part_of UBERON:0034778 ! rostral CA2 + +[Term] +id: UBERON:0034834 +name: stratum radiatum of rostral CA2 +synonym: "CA2Rsr" RELATED ABBREVIATION [DHBA:11287] +xref: DHBA:11287 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0005372 ! hippocampus stratum radiatum +intersection_of: part_of UBERON:0034778 ! rostral CA2 +relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum +relationship: part_of UBERON:0034778 ! rostral CA2 + +[Term] +id: UBERON:0034835 +name: stratum pyramidale of rostral CA2 +synonym: "CA2Rsp" RELATED ABBREVIATION [DHBA:11288] +xref: DHBA:11288 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0002313 ! hippocampus pyramidal layer +intersection_of: part_of UBERON:0034778 ! rostral CA2 +relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer +relationship: part_of UBERON:0034778 ! rostral CA2 + +[Term] +id: UBERON:0034836 +name: stratum oriens of rostral CA2 +synonym: "CA2Rso" RELATED ABBREVIATION [DHBA:11289] +xref: DHBA:11289 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0005371 ! hippocampus stratum oriens +intersection_of: part_of UBERON:0034778 ! rostral CA2 +relationship: part_of UBERON:0005371 ! hippocampus stratum oriens +relationship: part_of UBERON:0034778 ! rostral CA2 + +[Term] +id: UBERON:0034838 +name: stratum lacunosum-moleculare of rostral CA3 +synonym: "CA3Rslm" RELATED ABBREVIATION [DHBA:11296] +xref: DHBA:11296 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare +intersection_of: part_of UBERON:0034779 ! rostral CA3 +relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare +relationship: part_of UBERON:0034779 ! rostral CA3 + +[Term] +id: UBERON:0034839 +name: stratum radiatum of rostral CA3 +synonym: "CA3Rsr" RELATED ABBREVIATION [DHBA:11297] +xref: DHBA:11297 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0005372 ! hippocampus stratum radiatum +intersection_of: part_of UBERON:0034779 ! rostral CA3 +relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum +relationship: part_of UBERON:0034779 ! rostral CA3 + +[Term] +id: UBERON:0034840 +name: stratum lucidum of rostral CA3 +synonym: "CA3Rsl" RELATED ABBREVIATION [DHBA:11298] +xref: DHBA:11298 +is_a: UBERON:0014560 ! CA3 stratum lucidum +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0007637 ! hippocampus stratum lucidum +intersection_of: part_of UBERON:0034779 ! rostral CA3 +relationship: part_of UBERON:0034779 ! rostral CA3 + +[Term] +id: UBERON:0034841 +name: stratum pyramidale of rostral CA3 +synonym: "CA3Rsp" RELATED ABBREVIATION [DHBA:11299] +xref: DHBA:11299 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0002313 ! hippocampus pyramidal layer +intersection_of: part_of UBERON:0034779 ! rostral CA3 +relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer +relationship: part_of UBERON:0034779 ! rostral CA3 + +[Term] +id: UBERON:0034842 +name: stratum oriens of rostral CA3 +synonym: "CA3Rso" RELATED ABBREVIATION [DHBA:11300] +xref: DHBA:11300 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0005371 ! hippocampus stratum oriens +intersection_of: part_of UBERON:0034779 ! rostral CA3 +relationship: part_of UBERON:0005371 ! hippocampus stratum oriens +relationship: part_of UBERON:0034779 ! rostral CA3 + +[Term] +id: UBERON:0034858 +name: stratum lacunosum-moleculare of uncal CA1 +synonym: "CA1Uslm" RELATED ABBREVIATION [DHBA:266441271] +xref: DHBA:266441271 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare +intersection_of: part_of UBERON:0034774 ! uncal CA1 +relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare +relationship: part_of UBERON:0034774 ! uncal CA1 + +[Term] +id: UBERON:0034859 +name: stratum radiatum of uncal CA1 +synonym: "CA1Usr" RELATED ABBREVIATION [DHBA:266441283] +xref: DHBA:266441283 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0005372 ! hippocampus stratum radiatum +intersection_of: part_of UBERON:0034774 ! uncal CA1 +relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum +relationship: part_of UBERON:0034774 ! uncal CA1 + +[Term] +id: UBERON:0034860 +name: stratum pyramidale of uncal CA1 +synonym: "CA1Usp" RELATED ABBREVIATION [DHBA:266441287] +xref: DHBA:266441287 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0002313 ! hippocampus pyramidal layer +intersection_of: part_of UBERON:0034774 ! uncal CA1 +relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer +relationship: part_of UBERON:0034774 ! uncal CA1 + +[Term] +id: UBERON:0034861 +name: stratum oriens of uncal CA1 +synonym: "CA1Uso" RELATED ABBREVIATION [DHBA:266441291] +xref: DHBA:266441291 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0005371 ! hippocampus stratum oriens +intersection_of: part_of UBERON:0034774 ! uncal CA1 +relationship: part_of UBERON:0005371 ! hippocampus stratum oriens +relationship: part_of UBERON:0034774 ! uncal CA1 + +[Term] +id: UBERON:0034863 +name: stratum lacunosum-moleculare of uncal CA2 +synonym: "CA2Uslm" RELATED ABBREVIATION [DHBA:266441315] +xref: DHBA:266441315 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare +intersection_of: part_of UBERON:0034775 ! uncal CA2 +relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare +relationship: part_of UBERON:0034775 ! uncal CA2 + +[Term] +id: UBERON:0034864 +name: stratum radiatum of uncal CA2 +synonym: "CA2Usr" RELATED ABBREVIATION [DHBA:266441327] +xref: DHBA:266441327 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0005372 ! hippocampus stratum radiatum +intersection_of: part_of UBERON:0034775 ! uncal CA2 +relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum +relationship: part_of UBERON:0034775 ! uncal CA2 + +[Term] +id: UBERON:0034865 +name: stratum pyramidale of uncal CA2 +synonym: "CA2Usp" RELATED ABBREVIATION [DHBA:266441331] +xref: DHBA:266441331 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0002313 ! hippocampus pyramidal layer +intersection_of: part_of UBERON:0034775 ! uncal CA2 +relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer +relationship: part_of UBERON:0034775 ! uncal CA2 + +[Term] +id: UBERON:0034866 +name: stratum oriens of uncal CA2 +synonym: "CA2Uso" RELATED ABBREVIATION [DHBA:266441335] +xref: DHBA:266441335 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0005371 ! hippocampus stratum oriens +intersection_of: part_of UBERON:0034775 ! uncal CA2 +relationship: part_of UBERON:0005371 ! hippocampus stratum oriens +relationship: part_of UBERON:0034775 ! uncal CA2 + +[Term] +id: UBERON:0034868 +name: stratum lacunosum-moleculare of uncal CA3 +synonym: "CA3Uslm" RELATED ABBREVIATION [DHBA:266441359] +xref: DHBA:266441359 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare +intersection_of: part_of UBERON:0034776 ! uncal CA3 +relationship: part_of UBERON:0007640 ! hippocampus stratum lacunosum moleculare +relationship: part_of UBERON:0034776 ! uncal CA3 + +[Term] +id: UBERON:0034869 +name: stratum radiatum of uncal CA3 +synonym: "CA3Usr" RELATED ABBREVIATION [DHBA:266441371] +xref: DHBA:266441371 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0005372 ! hippocampus stratum radiatum +intersection_of: part_of UBERON:0034776 ! uncal CA3 +relationship: part_of UBERON:0005372 ! hippocampus stratum radiatum +relationship: part_of UBERON:0034776 ! uncal CA3 + +[Term] +id: UBERON:0034870 +name: stratum lucidum of uncal CA3 +synonym: "CA3Usl" RELATED ABBREVIATION [DHBA:266441375] +xref: DHBA:266441375 +is_a: UBERON:0014560 ! CA3 stratum lucidum +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0007637 ! hippocampus stratum lucidum +intersection_of: part_of UBERON:0034776 ! uncal CA3 +relationship: part_of UBERON:0034776 ! uncal CA3 + +[Term] +id: UBERON:0034871 +name: stratum pyramidale of uncal CA3 +synonym: "CA3Usp" RELATED ABBREVIATION [DHBA:266441379] +xref: DHBA:266441379 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0002313 ! hippocampus pyramidal layer +intersection_of: part_of UBERON:0034776 ! uncal CA3 +relationship: part_of UBERON:0002313 ! hippocampus pyramidal layer +relationship: part_of UBERON:0034776 ! uncal CA3 + +[Term] +id: UBERON:0034872 +name: stratum oriens of uncal CA3 +synonym: "CA3Uso" RELATED ABBREVIATION [DHBA:266441383] +xref: DHBA:266441383 +is_a: UBERON:0014567 ! layer of hippocampal field +intersection_of: UBERON:0014567 ! layer of hippocampal field +intersection_of: part_of UBERON:0005371 ! hippocampus stratum oriens +intersection_of: part_of UBERON:0034776 ! uncal CA3 +relationship: part_of UBERON:0005371 ! hippocampus stratum oriens +relationship: part_of UBERON:0034776 ! uncal CA3 + +[Term] +id: UBERON:0034873 +name: bodily gas +def: "Any substance in the body or expelled from the body that is in a gaseous state." [http://orcid.org/0000-0002-6601-2165] +synonym: "gas in anatomical space" EXACT [] +synonym: "portion of gas in anatomical space" EXACT [FMA:84580] +xref: FMA:84580 +is_a: UBERON:0000463 ! organism substance + +[Term] +id: UBERON:0034874 +name: air in respiratory system +def: "Any portion of gas located in a part of the respiratory system that is composed primarily of air." [http://orcid.org/0000-0002-6601-2165] +synonym: "respiratory air" EXACT [FMA:84581] +synonym: "respiratory system air" EXACT [] +xref: FMA:84581 +is_a: UBERON:0034947 ! gas in respiratory system + +[Term] +id: UBERON:0034875 +name: future pituitary gland +synonym: "pituitary primordium" EXACT [EHDAA2:0001472] +xref: EHDAA2:0001472 +xref: EMAPA:32796 +is_a: UBERON:0006598 ! presumptive structure +intersection_of: UBERON:0006598 ! presumptive structure +intersection_of: has_potential_to_develop_into UBERON:0000007 ! pituitary gland +relationship: develops_from UBERON:0000924 {source="Wikipedia"} ! ectoderm +relationship: has_potential_to_develop_into UBERON:0000007 ! pituitary gland +relationship: part_of UBERON:0000033 {source="EMAPA"} ! head + +[Term] +id: UBERON:0034876 +name: future neurohypophysis +alt_id: EMAPA:16647 +def: "the outgrowth of neuroectoderm located on the floor of the embryonic hypothalamus that gives rise to the neurohypophysis (posterior lobe) of the pituitary gland" [https://sourceforge.net/p/obo/mammalian-phenotype-requests/1930/, MP:0013339] +synonym: "neurohypohysial region" RELATED [EHDAA2:0004434] +synonym: "neurohypophyseal bud" RELATED [MP:0013339] +xref: EHDAA2:0004434 +xref: EMAPA:16647 +is_a: UBERON:0006598 ! presumptive structure +intersection_of: UBERON:0006598 ! presumptive structure +intersection_of: has_potential_to_develop_into UBERON:0002198 ! neurohypophysis +relationship: has_potential_to_develop_into UBERON:0002198 ! neurohypophysis +relationship: part_of UBERON:0001894 {source="EMAPA"} ! diencephalon +relationship: part_of UBERON:0034875 {source="EMAPA"} ! future pituitary gland + +[Term] +id: UBERON:0034877 +name: angioblastic cord +def: "the cordlike masses of splanchnic mesenchymal cells ventral to the primordial pericardial coelom that arrange themselves side by side to form the primordia of the endocardial heart tubes" [MP:0012500] +synonym: "angiogenic cell cluster" EXACT [] +xref: http://linkedlifedata.com/resource/umls/id/C1515990 +xref: NCIT:C34106 +is_a: UBERON:0001048 ! primordium +relationship: develops_from UBERON:0004139 ! cardiogenic plate + +[Term] +id: UBERON:0034878 +name: prechordal mesoderm +def: "the area of axial mesoderm that develops into the prechordal plate" [MGI:anna] +synonym: "prechordal mesenchyme" EXACT [] +is_a: UBERON:0002050 ! embryonic structure +intersection_of: UBERON:0005423 ! developing anatomical structure +intersection_of: has_potential_to_develop_into UBERON:0003063 ! prechordal plate +intersection_of: part_of UBERON:0003068 ! axial mesoderm +relationship: has_potential_to_develop_into UBERON:0003063 ! prechordal plate +relationship: part_of UBERON:0003068 ! axial mesoderm + +[Term] +id: UBERON:0034884 +name: juxtaglomerular arteriole +xref: EMAPA:27991 +is_a: UBERON:0001980 ! arteriole +is_a: UBERON:0003644 ! kidney arterial blood vessel + +[Term] +id: UBERON:0034885 +name: viscerocranial mucosa +def: "Nonparenchymatous organ which consists of mucosae of the nose, mouth, pharyngotympanic tube, pharynx and larynx. Examples: There is only one viscerocranial mucosa." [FMA:59658] +xref: FMA:59658 +is_a: UBERON:0000344 ! mucosa +relationship: part_of UBERON:0007811 ! craniocervical region + +[Term] +id: UBERON:0034888 +name: primary motor cortex layer 1 +synonym: "primary motor cortex lamina 1" RELATED [NLX:152661] +synonym: "primary motor cortex lamina I" RELATED [NLX:152661] +xref: NLX:152661 +is_a: UBERON:0002301 ! layer of neocortex +relationship: part_of UBERON:0001384 {source="NIFSTD"} ! primary motor cortex +relationship: part_of UBERON:0005390 {source="NIFSTD"} ! cortical layer I + +[Term] +id: UBERON:0034889 +name: posterior parietal cortex +def: "The posterior parietal cortex is a portion of the parietal lobe which manipulates mental images, and integrates sensory and motor portions of the brain. Some sources say that it consists of Brodmann area 5 and Brodmann area 7. Other sources say it is only area 7." [http://en.wikipedia.org/wiki/Posterior_parietal_cortex] +synonym: "PoPC" RELATED ABBREVIATION [DHBA:10214] +xref: DHBA:10214 +xref: http://en.wikipedia.org/wiki/Posterior_parietal_cortex +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0016530 {source="DHBA"} ! parietal cortex + +[Term] +id: UBERON:0034891 +name: insular cortex +synonym: "cortex of insula" EXACT [FMA:242223] +synonym: "gray matter of insula" RELATED [FMA:242223] +synonym: "ICx" RELATED ABBREVIATION [DHBA:10288] +synonym: "iNS" BROAD ABBREVIATION [FMA:242223, FMA:CMA] +synonym: "insular neocortex" EXACT [DHBA:10288] +xref: BM:Tel-Cx-Ins +xref: DHBA:10288 +xref: DMBA:16058 +xref: EMAPA:35432 +xref: FMA:242223 +xref: http://www.snomedbrowser.com/Codes/Details/369221008 +xref: MA:0000909 +is_a: UBERON:0016529 ! cortex of cerebral lobe +relationship: part_of UBERON:0002022 ! insula + +[Term] +id: UBERON:0034892 +name: granular insular cortex +def: "Granular region of the insular cortex" [http://orcid.org/0000-0002-6601-2165] +synonym: "area Ig of Mesulam" RELATED [NeuroNames:1192] +synonym: "cortex insularis granularis" RELATED LATIN [NeuroNames:1192] +synonym: "granular domain" RELATED [NeuroNames:1192] +synonym: "granular insula" EXACT [NeuroNames:1192] +synonym: "granular insula" RELATED [NeuroNames:1192] +synonym: "granular insular area" RELATED [NeuroNames:1192] +synonym: "granular insular cortex" RELATED [NeuroNames:1192] +synonym: "granular-isocortical insula" RELATED [NeuroNames:1192] +synonym: "insular isocortical belt" RELATED [NeuroNames:1192] +synonym: "visceral area" RELATED [NeuroNames:1192] +xref: BTO:0004341 +xref: DHBA:10290 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1192 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0034891 ! insular cortex + +[Term] +id: UBERON:0034893 +name: agranular insular cortex +def: "Agranular region of the insular cortex" [http://orcid.org/0000-0002-6601-2165] +synonym: "cortex insularis dysgranularis" RELATED LATIN [NeuroNames:1780] +synonym: "dysgranular insula" RELATED [NeuroNames:1780] +synonym: "dysgranular insular area" RELATED [NeuroNames:1780] +synonym: "dysgranular insular cortex" EXACT [DHBA:10289] +synonym: "dysgranular insular cortex" RELATED [NeuroNames:1780] +synonym: "gustatory area" RELATED [NeuroNames:1780] +synonym: "gustatory cortex" RELATED [NeuroNames:1780] +xref: BTO:0004342 +xref: DHBA:10289 +xref: DHBA:10328 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1780 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0034891 ! insular cortex + +[Term] +id: UBERON:0034894 +name: lateral nucleus of stria terminalis +synonym: "BSTL" RELATED ABBREVIATION [NLX:54921] +synonym: "lateral bed nucleus of stria terminalis" RELATED [NLX:54921] +synonym: "lateral bed nucleus of the stria terminalis" RELATED [NLX:54921] +synonym: "lateral subdivision of BNST" EXACT [DHBA:10386] +xref: DHBA:10386 +xref: NLX:54921 +xref: NLX:60319 +is_a: UBERON:0009663 ! telencephalic nucleus +disjoint_from: UBERON:0034895 {source="lexical"} ! medial nucleus of stria terminalis +relationship: part_of UBERON:0001880 {source="NIFSTD"} ! bed nucleus of stria terminalis + +[Term] +id: UBERON:0034895 +name: medial nucleus of stria terminalis +synonym: "BSTM" RELATED ABBREVIATION [NLX:80623] +synonym: "medial bed nucleus of stria terminalis" RELATED [NLX:80623] +synonym: "medial bed nucleus of the stria terminalis" RELATED [NLX:80623] +synonym: "medial subdivision of BNST" EXACT [DHBA:10385] +xref: DHBA:10385 +xref: NLX:80623 +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0001880 {source="NIFSTD"} ! bed nucleus of stria terminalis + +[Term] +id: UBERON:0034896 +name: ansa peduncularis +synonym: "ansa peduncularis in thalamo" EXACT [FMA:TA] +synonym: "ansa peduncularis in thalamus" EXACT [FMA:62071] +synonym: "AP" RELATED ABBREVIATION [DHBA:266441591] +synonym: "peduncular loop" EXACT [FMA:62071] +xref: DHBA:266441591 +xref: FMA:62071 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=445 +xref: MBA:892 +is_a: UBERON:0000122 ! neuron projection bundle +is_a: UBERON:0011215 ! central nervous system cell part cluster +relationship: part_of UBERON:0001900 {source="FMA"} ! ventral thalamus +relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts + +[Term] +id: UBERON:0034898 +name: alveolar ridge of premaxilla +def: "The thickened ridge of bone that contains the tooth sockets on the premaxilla." [http://orcid.org/0000-0002-6601-2165] +synonym: "pars dentalis of premaxilla" EXACT [AAO:0000397] +xref: AAO:0000397 +is_a: UBERON:0004103 ! alveolar ridge +intersection_of: UBERON:0004103 ! alveolar ridge +intersection_of: part_of UBERON:0002244 ! premaxilla +relationship: part_of UBERON:0002244 {source="AAO"} ! premaxilla + +[Term] +id: UBERON:0034900 +name: palatine process of premaxilla +def: "Lingual ledge on the inner surface of the premaxilla." [AAO:0000414, AAO:LAP] +synonym: "pars palatina of premaxilla" EXACT [AAO:0000414] +xref: AAO:0000414 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002244 ! premaxilla + +[Term] +id: UBERON:0034901 +name: cervical sympathetic nerve trunk +def: "The cervical ganglia are paravertebral ganglia of the sympathetic nervous system. These emerging postganglionic nerves synapse with preganglionic nerves from the thoracic spinal cord. They consist of three paravertebral ganglia: superior cervical ganglion middle cervical ganglion inferior cervical ganglion. The inferior ganglion may be fused with the first thoracic ganglion to form a single structure, the stellate ganglion. Nerves emerging from cervical sympathetic ganglia contribute to the cardiac plexus, among other things." [http://en.wikipedia.org/wiki/Cervical_ganglia] +synonym: "cervical part of sympathetic trunk" EXACT [FMA:6261] +synonym: "cervical sympathetic chain" EXACT [FMA:6261] +synonym: "cervical sympathetic trunk" EXACT [FMA:6261] +xref: Cervical:ganglia +xref: FMA:6261 +xref: http://www.snomedbrowser.com/Codes/Details/280533000 +is_a: UBERON:0004295 ! sympathetic nerve trunk +intersection_of: UBERON:0004295 ! sympathetic nerve trunk +intersection_of: part_of UBERON:0005434 ! cervical region +relationship: part_of UBERON:0005434 ! cervical region + +[Term] +id: UBERON:0034902 +name: sacral sympathetic nerve trunk +synonym: "pelvic sympathetic nerve trunk" RELATED [MA:0001164] +synonym: "pelvic sympathetic trunk" RELATED [] +synonym: "sacral part of sympathetic trunk" EXACT [FMA:6264] +synonym: "sacral sympathetic chain" EXACT [FMA:6264] +synonym: "sacral sympathetic trunk" EXACT [FMA:6264] +xref: EMAPA:37656 {source="MA:th"} +xref: FMA:6264 +xref: MA:0001164 +is_a: UBERON:0004295 ! sympathetic nerve trunk +intersection_of: UBERON:0004295 ! sympathetic nerve trunk +intersection_of: part_of UBERON:0005473 ! sacral region +relationship: part_of UBERON:0005473 ! sacral region + +[Term] +id: UBERON:0034903 +name: left atrium endocardium +def: "Endocardium that is part of the left atrium." [http://orcid.org/0000-0002-6601-2165] +synonym: "endocardium of left atrium" EXACT [FMA:7286] +synonym: "left atrial endocardium" EXACT [] +synonym: "left atrium endocardial tissue" RELATED [VHOG:0001226] +xref: FMA:7286 +xref: http://www.snomedbrowser.com/Codes/Details/190064008 +xref: VHOG:0001226 +is_a: UBERON:0002166 ! endocardium of atrium +intersection_of: UBERON:0002165 ! endocardium +intersection_of: part_of UBERON:0002079 ! left cardiac atrium +relationship: part_of UBERON:0002079 ! left cardiac atrium + +[Term] +id: UBERON:0034905 +name: gland lumen +synonym: "lumen of gland" EXACT [] +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0002530 ! gland +relationship: luminal_space_of UBERON:0002530 ! gland +relationship: part_of UBERON:0002530 ! gland + +[Term] +id: UBERON:0034907 +name: pineal parenchyma +def: "Parenchymal tissue that forms the pineal gland." [http://orcid.org/0000-0002-6601-2165] +xref: http://linkedlifedata.com/resource/umls/id/C1519088 +xref: NCIT:C41834 +is_a: UBERON:0005158 ! parenchyma of central nervous system +intersection_of: UBERON:0000353 ! parenchyma +intersection_of: part_of UBERON:0001905 ! pineal body +relationship: part_of UBERON:0001905 ! pineal body + +[Term] +id: UBERON:0034908 +name: scapular muscle +def: "Any of the muscles that are responsible for moving the scapula. In humans these are the levator scapulae, the infraspinatus muscle, the teres major, the teres minor, and the supraspinatus muscle." [HPO:curators] +is_a: UBERON:0014892 ! skeletal muscle organ +intersection_of: UBERON:0014892 ! skeletal muscle organ +intersection_of: attaches_to UBERON:0006849 ! scapula +relationship: attaches_to UBERON:0006849 ! scapula + +[Term] +id: UBERON:0034909 +name: intermaxillary suture +def: "A cranial suture in the midline of the skull that connects the left and right maxilla bones" [http://www.researchgate.net/publication/255909975_Relationship_between_intermaxillary_suture_and_midline_diastema, https://orcid.org/0000-0001-5889-4463] +comment: in humans, the upper maxillae (the upper jaw) is composed of the right and left maxilla bones, which are fused in the midline at the intermaxillary suture to form the upper jaw.[https://orcid.org/0000-0001-5889-4463] +synonym: "intermaxillary suture of skull" EXACT [FMA:52963] +xref: FMA:52963 +is_a: UBERON:0003685 ! cranial suture +is_a: UBERON:0009199 ! facial suture +intersection_of: UBERON:0003685 ! cranial suture +intersection_of: connects UBERON:0002397 {minCardinality="2", maxCardinality="2"} ! maxilla +relationship: connects UBERON:0002397 ! maxilla +relationship: part_of UBERON:0001709 ! upper jaw region + +[Term] +id: UBERON:0034910 +name: medial pretectal nucleus +synonym: "medial pretectal area" RELATED [NeuroNames:1176] +synonym: "medial pretectal nucleus" RELATED [NeuroNames:1176] +synonym: "MPT" RELATED ABBREVIATION [DHBA:12184] +synonym: "MPT" RELATED ABBREVIATION [DMBA:16585] +xref: DHBA:12184 +xref: DMBA:16585 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1176 +is_a: UBERON:0011214 ! nucleus of midbrain tectum +is_a: UBERON:0014450 ! pretectal nucleus + +[Term] +id: UBERON:0034918 +name: anterior pretectal nucleus +synonym: "anterior (ventral /principal) pretectal nucleus" EXACT [DHBA:12187] +synonym: "anterior pretectal nucleus" RELATED [NeuroNames:1116] +xref: DHBA:12187 +xref: EMAPA:37920 {source="MA:th"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1116 +xref: NLX:144456 +is_a: UBERON:0011214 ! nucleus of midbrain tectum +is_a: UBERON:0014450 ! pretectal nucleus + +[Term] +id: UBERON:0034919 +name: juvenile stage +def: "The stage of being no more dependent of the nest and/or from caregivers for subsistence while having not reach sexual maturity." [Bgee:AN, https://github.com/obophenotype/uberon/issues/645] +is_a: UBERON:0000105 ! life cycle stage +property_value: dc-contributor https://github.com/ANiknejad +property_value: dc-contributor https://github.com/cmungall +relationship: part_of UBERON:0000112 ! sexually immature stage + +[Term] +id: UBERON:0034920 +name: infant stage +def: "Nursing stage that follows the neonate stage in mammals and ends at weaning." [Bgee:AN, https://github.com/obophenotype/uberon/issues/644] +is_a: UBERON:0000105 ! life cycle stage +property_value: dc-contributor https://github.com/ANiknejad +property_value: dc-contributor https://github.com/cmungall +relationship: immediately_preceded_by UBERON:0007221 ! neonate stage +relationship: part_of UBERON:0018685 ! nursing stage + +[Term] +id: UBERON:0034921 +name: multi organ part structure +def: "An multicellular anatomical structure that has subparts of multiple organs as a part." [CARO:0020001] +synonym: "anatomical cluster" RELATED [CARO:0020001] +xref: CARO:0020001 +is_a: UBERON:0010000 {source="CARO"} ! multicellular anatomical structure +relationship: composed_primarily_of UBERON:0000064 ! organ part + +[Term] +id: UBERON:0034922 +name: cell cluster +def: "A cluster of cells, largely surrounded by a morphological boundary." [CARO:0020002] +xref: CARO:0020002 +xref: FMA:62807 +is_a: UBERON:0010000 {source="CARO"} ! multicellular anatomical structure +relationship: surrounded_by UBERON:0000015 ! non-material anatomical boundary + +[Term] +id: UBERON:0034923 +name: disconnected anatomical group +def: "Material anatomical entity consisting of multiple anatomical structures that are not connected to each other." [CARO:0020000] +xref: CARO:0020000 +is_a: UBERON:0000465 {source="CARO"} ! material anatomical entity +relationship: composed_primarily_of UBERON:0000061 ! anatomical structure +relationship: has_component UBERON:0000061 {minCardinality="2"} ! anatomical structure + +[Term] +id: UBERON:0034924 +name: aligned anatomical group +def: "An anatomical group whose members are arranged in a line." [CARO:0002002] +comment: Examples include the rows of sense organs commonly found in the cuticles of insects. +xref: CARO:0002002 +is_a: UBERON:0034923 {source="CARO"} ! disconnected anatomical group + +[Term] +id: UBERON:0034925 +name: anatomical collection +def: "A collection of anatomical structures that are alike in terms of their morphology or developmental origin." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0000465 ! material anatomical entity +relationship: has_member UBERON:0000061 ! anatomical structure + +[Term] +id: UBERON:0034926 +name: anatomical row +def: "An anatomical collection that is arranged in a line." [http://orcid.org/0000-0002-6601-2165] +xref: FBbt:00100152 +is_a: UBERON:0034925 ! anatomical collection + +[Term] +id: UBERON:0034927 +name: arcuate artery of foot +def: "The arcuate artery of the foot (metatarsal artery) arises a little anterior to the lateral tarsal artery; it passes lateralward, over the bases of the metatarsal bones, beneath the tendons of the Extensor digitorum brevis, its direction being influenced by its point of origin; and its anastomoses with the lateral tarsal and lateral plantar arteries. This vessel gives off the second, third, and fourth dorsal metatarsal arteries. It is not present in all individuals." [http://en.wikipedia.org/wiki/Arcuate_artery_of_the_foot] +xref: FMA:44594 +xref: http://en.wikipedia.org/wiki/Arcuate_artery_of_the_foot +xref: http://www.snomedbrowser.com/Codes/Details/244331005 +is_a: UBERON:0003521 ! pes blood vessel +is_a: UBERON:0004573 ! systemic artery +relationship: branching_part_of UBERON:0001537 {source="FMA"} ! anterior tibial artery +relationship: part_of UBERON:0001537 ! anterior tibial artery + +[Term] +id: UBERON:0034928 +name: dorsal surface of penis +synonym: "dorsum of penis" EXACT [FMA:19623] +synonym: "dorsum penis" EXACT [FMA:TA] +xref: FMA:19623 +is_a: UBERON:0036215 ! anatomical surface region +intersection_of: UBERON:0036215 ! anatomical surface region +intersection_of: in_dorsal_side_of UBERON:0000989 ! penis +relationship: in_dorsal_side_of UBERON:0000989 ! penis +relationship: part_of UBERON:0000989 ! penis + +[Term] +id: UBERON:0034929 +name: external soft tissue zone +def: "A region or zone on the surface of an organism that encompasses skin and any adnexa, down through muscles and bounded by underlying skeletal support structures." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0010000 ! multicellular anatomical structure +relationship: has_part UBERON:0000014 ! zone of skin +relationship: has_part UBERON:0001015 ! musculature +relationship: has_part UBERON:0001021 ! nerve +relationship: has_part UBERON:0002049 ! vasculature +relationship: part_of UBERON:0000475 ! organism subdivision + +[Term] +id: UBERON:0034930 +name: auricular feather +is_a: UBERON:0000022 ! feather +intersection_of: UBERON:0000022 ! feather +intersection_of: surrounds UBERON:0001691 ! external ear +relationship: surrounds UBERON:0001691 ! external ear + +[Term] +id: UBERON:0034931 +name: perforant path +def: "A pathway of fibers originating in the lateral part of the entorhinal area, perforating the subiculum of the hippocampus, and running into the stratum moleculare of the hippocampus, where these fibers synapse with others that go to the dentate gyrus. (Dorland, 28th ed)" [MESH:A08.612.600] +synonym: "perf" RELATED ABBREVIATION [DHBA:12080] +synonym: "perforant path" RELATED [MESH:A08.612.600] +synonym: "perforant pathway" RELATED [MESH:A08.612.600] +synonym: "perforating fasciculus" RELATED [MESH:A08.612.600] +synonym: "tractus perforans" RELATED LATIN [http://en.wikipedia.org/wiki/Perforant_path] +xref: DHBA:12080 +xref: HBA:265505250 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2686 +xref: http://linkedlifedata.com/resource/umls/id/C0524810 +xref: MBA:713 +xref: MESH:D019580 +xref: NCIT:C13084 +xref: Perforant:path +is_a: UBERON:0007702 ! tract of brain +intersection_of: UBERON:0001018 ! axon tract +intersection_of: extends_fibers_into UBERON:0002304 ! layer of dentate gyrus +intersection_of: extends_fibers_into UBERON:0002728 ! entorhinal cortex +intersection_of: extends_fibers_into UBERON:0003876 ! hippocampal field +relationship: extends_fibers_into UBERON:0002304 ! layer of dentate gyrus +relationship: extends_fibers_into UBERON:0002728 ! entorhinal cortex +relationship: extends_fibers_into UBERON:0003876 ! hippocampal field +relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon +relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts + +[Term] +id: UBERON:0034932 +name: epithelium of biliary system +def: "The epithelial layer covering the biliary system. This includes the epithelium of the gallbladder (when present) as well as the intrahepatic and extrahepatic bile ducts." [BTO:0001513, http://orcid.org/0000-0002-6601-2165, MGI:cs] +synonym: "biliary epithelium" RELATED [BTO:0001513] +synonym: "biliary system epithelium" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "biliary tract epithelium" RELATED [http://orcid.org/0000-0002-6601-2165] +xref: BTO:0001513 +is_a: UBERON:0000483 ! epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0002294 ! biliary system +relationship: part_of UBERON:0002294 ! biliary system + +[Term] +id: UBERON:0034933 +name: layer of smooth muscle tissue +def: "Any organ component layer that consists of smooth muscle tissue." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0018260 ! layer of muscle tissue +intersection_of: UBERON:0004923 ! organ component layer +intersection_of: composed_primarily_of UBERON:0001135 ! smooth muscle tissue +relationship: composed_primarily_of UBERON:0001135 ! smooth muscle tissue + +[Term] +id: UBERON:0034934 +name: Weber's gland +def: "One of the lingual glands located on the lateral margins of the tongue, at the level of the foliate papillae and in the root of the tongue behind the circumvallate papillae." [MGI:anna, PMCID:PMC2667924] +synonym: "gland of Weber" EXACT [] +synonym: "posterior superficial lingual gland" EXACT [MGI:anna] +is_a: UBERON:0001830 ! minor salivary gland +is_a: UBERON:0003409 ! gland of tongue + +[Term] +id: UBERON:0034935 +name: pars plicata of ciliary body +def: "Corrugated anterior region of ciliary body where ciliary processes arise" [http://orcid.org/0000-0002-6601-2165] +synonym: "ciliary crown" EXACT [FMA:58431] +synonym: "corona ciliaris" EXACT [FMA:58431] +xref: FMA:58431 +xref: http://www.snomedbrowser.com/Codes/Details/280859006 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001775 {source="FMA"} ! ciliary body + +[Term] +id: UBERON:0034936 +name: pars plana of ciliary body +def: "Flattened posterior region of ciliary body" [http://orcid.org/0000-0002-6601-2165] +synonym: "ciliary ring" EXACT [FMA:58480] +synonym: "orbiculus ciliaris" EXACT [FMA:58480] +xref: FMA:58480 +xref: http://www.snomedbrowser.com/Codes/Details/368830002 +xref: NCIT:C33219 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001775 {source="FMA"} ! ciliary body + +[Term] +id: UBERON:0034937 +name: pharyngeal bar +synonym: "branchial bar" RELATED [] +synonym: "gill bar" RELATED [] +is_a: UBERON:0004765 ! skeletal element +is_a: UBERON:0013765 ! digestive system element +relationship: part_of UBERON:0001042 ! chordate pharynx +relationship: present_in_taxon NCBITaxon:117569 +relationship: present_in_taxon NCBITaxon:7737 + +[Term] +id: UBERON:0034938 +name: mucocartilage tissue +def: "A temporary avascular cartilage found in the heads of ammocoete larvae and surrounded by perichondrium. Contains a few fibroblasts scattered throughout ECM containing elastic-like microfibrils." [ISBN:0124166857] +synonym: "mucocartilage" EXACT [] +synonym: "mucocartilaginous tissue" EXACT [] +is_a: UBERON:0002418 {notes="may not be considered true cartilage as it contains lamprins rather than collagen"} ! cartilage tissue +relationship: part_of UBERON:0009101 ! ammocoete + +[Term] +id: UBERON:0034939 +name: future piston +subset: cyclostome_subset +synonym: "future lamprey tongue" RELATED [UBERON:0010896] +synonym: "future lingual cartilage" EXACT [UBERON:0010896] +synonym: "future piston" RELATED [UBERON:0010896] +synonym: "piston mucocartilage" RELATED [] +is_a: UBERON:0007844 ! cartilage element +relationship: composed_primarily_of UBERON:0034938 ! mucocartilage tissue +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0034940 +name: venous sinus cavity +def: "An enlarged chamber in the blood sinus capable of accumulating a large volume of blood." [GOC:YMB, ZFA:0007073] +synonym: "blood sinus cavity" EXACT [ZFA:0007073] +synonym: "blood sinus lumen" EXACT [ZFA:0007073] +xref: ZFA:0007073 +is_a: UBERON:0010161 ! lumen of blood vessel +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0006615 ! venous sinus +relationship: luminal_space_of UBERON:0006615 ! venous sinus +relationship: part_of UBERON:0006615 ! venous sinus + +[Term] +id: UBERON:0034941 +name: blood sinus of vibrissa +def: "The sinuses of Vibrissae are the walls of blood spaces surrounding the roots of vibrissae." [MURDOCH:1838] +synonym: "blood sinus" BROAD [] +synonym: "lower cavernous sinus" NARROW SENSU [] +synonym: "ring sinus" NARROW [] +synonym: "sinus of vibrissa" EXACT [] +synonym: "sinuses of vibrissae" RELATED PLURAL [] +synonym: "upper cavernous sinus" NARROW SENSU [] +synonym: "vibrissa sinus" EXACT [] +is_a: UBERON:0000064 ! organ part +relationship: contains UBERON:0000178 ! blood +relationship: innervated_by UBERON:0001027 ! sensory nerve +relationship: part_of UBERON:0011933 ! vibrissa unit +relationship: surrounds UBERON:0011937 ! vibrissa root sheath + +[Term] +id: UBERON:0034942 +name: vibrissal follicle-sinus complex +def: "A sensory receptor of the mammalian integument system that consist of a blood sinus plus follicle, and sometimes concentric rings of epidermal tissue." [http://www.ncbi.nlm.nih.gov/pubmed/16342212] +synonym: "F-SC" RELATED ABBREVIATION [] +is_a: UBERON:0012451 ! sensory receptor +relationship: has_part UBERON:0010419 ! vibrissa follicle +relationship: has_part UBERON:0034941 ! blood sinus of vibrissa +relationship: part_of UBERON:0011933 ! vibrissa unit + +[Term] +id: UBERON:0034943 +name: saccus vasculosus +def: "a circumventricular organ of the hypothalamus of many jawed fishes, protruding from the caudal infundibular wall. It is a vascularized neuroepithelium that consists of coronet cells, cerebrospinal fluid-contacting neurons and supporting cells." [GOC:mr, http://www.ncbi.nlm.nih.gov/pubmed/23820554, http://www.ncbi.nlm.nih.gov/pubmed/4115676, https://github.com/obophenotype/uberon/issues/662] +is_a: UBERON:0005408 {source="GOC:mr"} ! circumventricular organ +property_value: dc-contributor https://github.com/cerivs +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/michaelerice +relationship: part_of UBERON:0001898 ! hypothalamus +relationship: present_in_taxon NCBITaxon:8022 {source="http://www.ncbi.nlm.nih.gov/pubmed/4115676"} + +[Term] +id: UBERON:0034944 +name: zone of organ +synonym: "organ region with floating fiat boundary" RELATED [FMA:55268] +synonym: "organ sector" EXACT [FMA:55268] +synonym: "organ zonal region" EXACT [] +synonym: "organ zone" EXACT [FMA:55268] +xref: FMA:55268 +is_a: UBERON:0000064 ! organ part + +[Term] +id: UBERON:0034945 +name: excreted gas +def: "Any gaseous product of an excretory process." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0000174 ! excreta +is_a: UBERON:0034873 ! bodily gas + +[Term] +id: UBERON:0034946 +name: gas excreted from digestive tract +def: "Any excreted gas that is produced by the digestive tract." [http://orcid.org/0000-0002-6601-2165] +comment: In mammals, mostly produced as a byproduct of bacterial fermentation in the gastrointestinal (GI) tract, especially the colon, and excreted through the rectum +synonym: "flatulence" NARROW [FMA:78440] +synonym: "flatus" NARROW LATIN [http://en.wikipedia.org/wiki/Flatulence] +synonym: "intestinal gas" NARROW [] +xref: FMA:78440 +is_a: UBERON:0034945 ! excreted gas +intersection_of: UBERON:0034945 ! excreted gas +intersection_of: produced_by UBERON:0001555 ! digestive tract +relationship: produced_by UBERON:0001555 ! digestive tract + +[Term] +id: UBERON:0034947 +name: gas in respiratory system +def: "Any portion of gas located in a part of the respiratory system." [http://orcid.org/0000-0002-6601-2165] +synonym: "respiratory gas" EXACT [] +synonym: "respiratory system gas" EXACT [] +is_a: UBERON:0034873 ! bodily gas +intersection_of: UBERON:0034873 ! bodily gas +intersection_of: located_in UBERON:0001004 ! respiratory system +relationship: located_in UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0034948 +name: carbon dioxide in respiratory system +def: "Any portion of gas located in a part of the respiratory system that is composed primarily of carbon dioxide." [http://orcid.org/0000-0002-6601-2165] +synonym: "respiratory CO2" EXACT [] +synonym: "respiratory system CO2" EXACT [] +is_a: UBERON:0034947 ! gas in respiratory system + +[Term] +id: UBERON:0034949 +name: lymphatic valve +synonym: "lymphatic vessel valve" EXACT [FMA:68454] +xref: FMA:68454 +is_a: UBERON:0003978 ! valve +relationship: part_of UBERON:0001473 ! lymphatic vessel + +[Term] +id: UBERON:0034950 +name: lymph sac of lymph heart +def: "An extensive dorsal subcutaneous sac that opens into a lymph heart." [https://github.com/obophenotype/uberon/issues/1383, https://www.merriam-webster.com/dictionary/lymph%20sac] +is_a: UBERON:0001473 ! lymphatic vessel +relationship: part_of UBERON:0015202 ! lymph heart + +[Term] +id: UBERON:0034951 +name: subcutaneous lymph sac +xref: http://www.snomedbrowser.com/Codes/Details/330419002 +is_a: UBERON:0034950 ! lymph sac of lymph heart +relationship: present_in_taxon NCBITaxon:8342 + +[Term] +id: UBERON:0034952 +name: intrapleuroperitoneal lymph sac +is_a: UBERON:0034950 ! lymph sac of lymph heart + +[Term] +id: UBERON:0034953 +name: embryonic lymph sac +def: "A population of lymphatic endothelial cell precursors that will form the lymph vessels." [https://doi.org/10.1152/japplphysiol.00201.2013, https://github.com/obophenotype/uberon/issues/1383] +synonym: "primary lymph sac" RELATED [] +xref: http://linkedlifedata.com/resource/umls/id/C1514424 +xref: NCIT:C34262 +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0007499 ! epithelial sac +relationship: part_of UBERON:0006558 {source="VHOG"} ! lymphatic part of lymphoid system + +[Term] +id: UBERON:0034958 +name: retroperitoneal embryonic lymph sac +def: "An embryonic lymph sac that forms in the root of the mesentery on the posterior abdominal wall" [https://discovery.lifemapsc.com/library/review-of-medical-embryology/chapter-128-development-of-the-lymphatic-system, https://github.com/obophenotype/uberon/issues/1383] +xref: http://linkedlifedata.com/resource/umls/id/C1514922 +xref: NCIT:C34285 +is_a: UBERON:0034953 ! embryonic lymph sac + +[Term] +id: UBERON:0034959 +name: right lymph heart +xref: XAO:0000371 +is_a: UBERON:0015202 ! lymph heart +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0015202 ! lymph heart +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: in_right_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0034960 +name: left lymph heart +xref: XAO:0000372 +is_a: UBERON:0015202 ! lymph heart +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0015202 ! lymph heart +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0034961 +name: embryonic lymph heart +def: "A lymph heart that is part of an embryo" [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0015202 ! lymph heart +intersection_of: UBERON:0015202 ! lymph heart +intersection_of: part_of UBERON:0000922 ! embryo +relationship: part_of UBERON:0000922 ! embryo + +[Term] +id: UBERON:0034962 +name: copulatory lymph heart +def: "A lymph heart that assists in the return of lymph from the penis to the venous system" [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0015202 ! lymph heart + +[Term] +id: UBERON:0034963 +name: lateral fornix of vagina +def: "The vaginal fornix that is to the side of the cervix." [http://en.wikipedia.org/wiki/Vaginal_fornix] +synonym: "lateral part of fornix of vagina" EXACT [FMA:19988] +synonym: "pars lateralis fornicis vaginae" EXACT LATIN [FMA:TA] +xref: FMA:19988 +is_a: UBERON:0000051 {source="FMA"} ! fornix of vagina + +[Term] +id: UBERON:0034964 +name: superficial epigastric artery +def: "An artery that arises from the femoral artery and supplies the abdominal wall. It distributes branches to the superficial subinguinal lymph glands, the superficial fascia, and the integument; it anastomoses with branches of the inferior epigastric, and with its fellow of the opposite side." [http://en.wikipedia.org/wiki/Superficial_epigastric_artery, http://orcid.org/0000-0002-6601-2165] +xref: FMA:20734 +xref: http://en.wikipedia.org/wiki/Superficial_epigastric_artery +xref: http://www.snomedbrowser.com/Codes/Details/368079006 +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0006349 ! epigastric artery +intersection_of: UBERON:0006349 ! epigastric artery +intersection_of: anastomoses_with UBERON:0001354 ! inferior epigastric artery +intersection_of: branching_part_of UBERON:0002060 ! femoral artery +relationship: anastomoses_with UBERON:0001354 ! inferior epigastric artery +relationship: branching_part_of UBERON:0002060 ! femoral artery +relationship: part_of UBERON:0002060 ! femoral artery + +[Term] +id: UBERON:0034965 +name: middle thyroid vein +def: "The middle thyroid vein collects the blood from the lower part of the thyroid gland, and after being joined by some veins from the larynx and trachea, ends in the lower part of the internal jugular vein." [http://en.wikipedia.org/wiki/Middle_thyroid_vein] +xref: FMA:50823 +xref: http://en.wikipedia.org/wiki/Middle_thyroid_vein +xref: http://www.snomedbrowser.com/Codes/Details/303422002 +is_a: UBERON:0018246 ! thyroid vein + +[Term] +id: UBERON:0034968 +name: sagittal sulcus +def: "A sulcus that lies within the longitudinal fissure." [http://en.wikipedia.org/wiki/Sagittal_sulcus, http://orcid.org/0000-0002-6601-2165] +xref: Sagittal:sulcus +is_a: UBERON:0013118 ! sulcus of brain +relationship: part_of UBERON:0002921 ! longitudinal fissure + +[Term] +id: UBERON:0034969 +name: epithelial layer of duct +synonym: "duct epithelium" RELATED [] +synonym: "ductal epithelium" RELATED [] +xref: http://linkedlifedata.com/resource/umls/id/C1512086 +xref: NCIT:C25787 +is_a: UBERON:0003914 ! epithelial tube +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000058 ! duct +relationship: part_of UBERON:0000058 ! duct + +[Term] +id: UBERON:0034971 +name: aortic body +def: "one of several small clusters of chemoreceptors, baroreceptors, and supporting cells located along the aortic arch." [http://en.wikipedia.org/wiki/Aortic_body] +synonym: "aortic bodies" RELATED PLURAL [http://en.wikipedia.org/wiki/Aortic_body] +synonym: "aortic glands" RELATED PLURAL [http://en.wikipedia.org/wiki/Aortic_body] +synonym: "Zuckerkandl's body" RELATED [http://en.wikipedia.org/wiki/Aortic_body] +xref: Aortic:body +xref: http://www.snomedbrowser.com/Codes/Details/75061007 +xref: NCIT:C97112 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005181 ! thoracic segment organ +is_a: UBERON:0034979 ! nonchromaffin paraganglion +relationship: part_of UBERON:0001508 ! arch of aorta + +[Term] +id: UBERON:0034972 +name: jugular body +def: "A nonchromaffin paraganglion located in the wall of the jugular bulb." [MESH:A08.800.550.700.120.600.350] +synonym: "glomus jugulare" EXACT [] +synonym: "glomus tympanicum" EXACT [] +synonym: "jugulotympanic body" EXACT [FMA:50848] +synonym: "tympanic body" EXACT [FMA:50848] +xref: FMA:50848 +xref: http://www.snomedbrowser.com/Codes/Details/181381004 +xref: http://www.snomedbrowser.com/Codes/Details/80595007 +xref: MESH:A08.800.550.700.120.600.350 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0034979 ! nonchromaffin paraganglion +relationship: part_of UBERON:0034980 {source="cjm"} ! jugular bulb + +[Term] +id: UBERON:0034978 +name: paraganglion (generic) +def: "A cluster of neuroendocrine cells derived from neural crest. Paraganglia may be chromaffin or nonchromaffin" [http://en.wikipedia.org/wiki/Paraganglion, http://orcid.org/0000-0002-6601-2165] +synonym: "paraganglia" RELATED PLURAL [] +xref: FMA:15648 +xref: http://en.wikipedia.org/wiki/Paraganglion +xref: http://www.snomedbrowser.com/Codes/Details/281695005 +is_a: UBERON:0010001 {source="cjm"} ! cell cluster organ +is_a: UBERON:0010313 ! neural crest-derived structure + +[Term] +id: UBERON:0034979 +name: nonchromaffin paraganglion +def: "A cluster of chemoreceptive and support cells associated with blood vessels and nerves." [http://en.wikipedia.org/wiki/Paraganglion, MESH:A08.800.550.700.120.600] +xref: MESH:A08.800.550.700.120.600 +is_a: UBERON:0034978 ! paraganglion (generic) + +[Term] +id: UBERON:0034980 +name: jugular bulb +synonym: "bulb of jugular vein" EXACT [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0013522 ! subdivision of tube +relationship: part_of UBERON:0001586 {source="FMA"} ! internal jugular vein + +[Term] +id: UBERON:0034981 +name: superior bulb of internal jugular vein +synonym: "bulbus superior venae jugularis" EXACT [FMA:TA] +synonym: "superior bulb of jugular vein" EXACT [FMA:50805] +xref: FMA:50805 +xref: http://www.snomedbrowser.com/Codes/Details/158945007 +is_a: UBERON:0034980 {source="FMA"} ! jugular bulb + +[Term] +id: UBERON:0034982 +name: inferior bulb of internal jugular vein +synonym: "bulbus inferior venae jugularis" EXACT [FMA:TA] +synonym: "inferior bulb of jugular vein" EXACT [FMA:50807] +xref: FMA:50807 +xref: http://www.snomedbrowser.com/Codes/Details/159029003 +is_a: UBERON:0034980 {source="FMA"} ! jugular bulb + +[Term] +id: UBERON:0034983 +name: ischial tuberosity +def: "A horizontal thickening onto which the muscles of the femur, such as the quadriceps and hamstring, attach." [MURDOCH:1034] +synonym: "ischial tuberosities" RELATED [http://en.wikipedia.org/wiki/Tuberosity_of_the_ischium] +synonym: "ischial tuberosity" RELATED [http://en.wikipedia.org/wiki/Tuberosity_of_the_ischium] +synonym: "tuber ischiadicum" RELATED [http://en.wikipedia.org/wiki/Tuberosity_of_the_ischium] +synonym: "tuber ischiale" EXACT [FMA:17010] +xref: FMA:17010 +xref: http://en.wikipedia.org/wiki/Tuberosity_of_the_ischium +xref: http://www.snomedbrowser.com/Codes/Details/182041003 +xref: NCIT:C105446 +is_a: UBERON:0005813 {source="FMA"} ! tubercle + +[Term] +id: UBERON:0034984 +name: nerve to quadratus femoris +def: "The nerve to quadratus femoris is a nerve that provides innervation to the quadratus femoris and gemellus inferior muscles." [http://en.wikipedia.org/wiki/Nerve_to_quadratus_femoris] +synonym: "nerve to quadratus femoris" RELATED [http://en.wikipedia.org/wiki/Nerve_to_quadratus_femoris] +synonym: "nerve to the quadratus femoris" RELATED [http://en.wikipedia.org/wiki/Nerve_to_quadratus_femoris] +synonym: "nerve to the quadratus femoris and gemellus inferior" RELATED [http://en.wikipedia.org/wiki/Nerve_to_quadratus_femoris] +synonym: "nerve to the quadratus femoris muscle" RELATED [http://en.wikipedia.org/wiki/Nerve_to_quadratus_femoris] +xref: FMA:78705 +xref: http://en.wikipedia.org/wiki/Nerve_to_quadratus_femoris +xref: http://www.snomedbrowser.com/Codes/Details/280351000 +is_a: UBERON:0001021 ! nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: innervates UBERON:0008537 ! quadratus femoris +relationship: branching_part_of UBERON:0034986 ! sacral nerve plexus +relationship: innervates UBERON:0008537 ! quadratus femoris +relationship: part_of UBERON:0034986 ! sacral nerve plexus + +[Term] +id: UBERON:0034986 +name: sacral nerve plexus +def: "A nerve plexus which provides motor and sensory nerves for the posterior thigh, most of the lower leg, the entire foot, and part of the pelvis." [http://en.wikipedia.org/wiki/Sacral_plexus] +synonym: "plexus sacralis" EXACT [FMA:TA] +synonym: "plexus sacralis" RELATED [http://en.wikipedia.org/wiki/Sacral_plexus] +synonym: "sacral plexus" EXACT [FMA:5909] +xref: FMA:5909 +xref: http://www.snomedbrowser.com/Codes/Details/181056009 +xref: NCIT:C12846 +xref: Sacral:plexus +is_a: UBERON:0001815 ! lumbosacral nerve plexus + +[Term] +id: UBERON:0034987 +name: lumbar nerve plexus +def: "A nervous plexus in the lumbar region of the body which forms part of the lumbosacral plexus." [http://en.wikipedia.org/wiki/Lumbar_plexus] +synonym: "femoral plexus" RELATED [http://en.wikipedia.org/wiki/Lumbar_plexus] +synonym: "lumbar plexus" EXACT [FMA:5908] +synonym: "plexus lumbalis" EXACT [FMA:TA] +synonym: "plexus lumbalis" RELATED [http://en.wikipedia.org/wiki/Lumbar_plexus] +xref: FMA:5908 +xref: http://www.snomedbrowser.com/Codes/Details/302506006 +xref: Lumbar:plexus +xref: NCIT:C12845 +is_a: UBERON:0001815 ! lumbosacral nerve plexus + +[Term] +id: UBERON:0034988 +name: tendon of obturator internus +synonym: "obturator internus tendon" EXACT [FMA:22300] +synonym: "tendon of obturator internus muscle" RELATED [FMA:22300] +xref: FMA:22300 +xref: http://www.snomedbrowser.com/Codes/Details/245172006 +is_a: UBERON:0000043 {source="FMA"} ! tendon + +[Term] +id: UBERON:0034989 +name: amygdalopiriform transition area +synonym: "amygdalopiriform TA" RELATED [NeuroNames:1971] +synonym: "amygdalopiriform transition area" RELATED [NeuroNames:1971] +synonym: "postpiriform transition area" EXACT [NeuroNames:1971] +synonym: "postpiriform transition area" RELATED [NeuroNames:1971] +xref: EMAPA:35125 +xref: FMA:77608 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1971 +xref: MA:0002918 +xref: PBA:10140 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001876 {source="MA"} ! amygdala + +[Term] +id: UBERON:0034991 +name: anterior cortical amygdaloid nucleus +synonym: "anterior cortical amygdaloid area" RELATED [DMBA:16000] +xref: DMBA:16000 +xref: EMAPA:35128 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2639 +xref: MA:0002920 +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0001876 {source="EMAPA"} ! amygdala +relationship: part_of UBERON:0014741 {source="DMBA"} ! lateral pallium + +[Term] +id: UBERON:0034993 +name: basal ventral medial nucleus of thalamus +synonym: "basal ventral medial thalamic nucleus" EXACT [EMAPA:35165] +xref: EMAPA:35165 +xref: FMA:84344 +xref: HBA:4427 +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +is_a: UBERON:0015234 ! nucleus of ventral thalamus +relationship: part_of UBERON:0001925 {source="HBA"} ! ventral lateral nucleus of thalamus +relationship: part_of UBERON:0002739 {source="EMAPA"} ! medial dorsal nucleus of thalamus + +[Term] +id: UBERON:0034994 +name: hindbrain cortical intermediate zone +synonym: "hindbrain mantle layer" EXACT [EMAPA:32917] +xref: DHBA:12682 +xref: EMAPA:32917 +is_a: UBERON:0004040 ! cortical intermediate zone +intersection_of: UBERON:0004040 ! cortical intermediate zone +intersection_of: part_of UBERON:0002028 ! hindbrain +relationship: part_of UBERON:0002028 ! hindbrain + +[Term] +id: UBERON:0034995 +name: jaw mesenchyme +def: "Mesenchyme that is part of a developing jaw [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:32907 +xref: EMAPA:35454 +is_a: UBERON:0005253 ! head mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0011595 ! jaw region +relationship: part_of UBERON:0011595 ! jaw region + +[Term] +id: UBERON:0034996 +name: outer renal medulla loop of Henle +synonym: "loop of Henle, outer medullary portion" EXACT [EMAPA:28322] +xref: EMAPA:28322 +is_a: UBERON:0034997 ! renal medulla loop of Henle +intersection_of: UBERON:0001288 ! loop of Henle +intersection_of: part_of UBERON:0001293 ! outer medulla of kidney +relationship: part_of UBERON:0001293 ! outer medulla of kidney + +[Term] +id: UBERON:0034997 +name: renal medulla loop of Henle +synonym: "loop of Henle of renal medulla" EXACT [EMAPA:35460] +synonym: "loop of Henle, medullary portion" EXACT [] +xref: EMAPA:35460 +is_a: UBERON:0001288 ! loop of Henle +intersection_of: UBERON:0001288 ! loop of Henle +intersection_of: part_of UBERON:0000362 ! renal medulla +relationship: part_of UBERON:0000362 ! renal medulla + +[Term] +id: UBERON:0034999 +name: posterolateral cortical amygdaloid nucleus +synonym: "cortical amygdalar nucleus, posterior part, lateral zone" RELATED [NeuroNames:3249] +synonym: "PLCo" RELATED ABBREVIATION [DMBA:15999] +synonym: "posterolateral cortical amygdalar nucleus" RELATED [NeuroNames:3249] +synonym: "posterolateral cortical amygdaloid area" EXACT [DMBA:15999] +synonym: "posterolateral cortical amygdaloid area" RELATED [NeuroNames:3249] +synonym: "posterolateral part of the cortical nucleus" RELATED [NeuroNames:3249] +xref: DMBA:15999 +xref: EMAPA:35699 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3249 +xref: MA:0002929 +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0002891 {source="EMAPA"} ! cortical amygdaloid nucleus + +[Term] +id: UBERON:0035001 +name: posteromedial cortical amygdaloid nucleus +synonym: "cortical amygdalar nucleus, posterior part, medial zone" RELATED [NeuroNames:3250] +synonym: "PMCo" RELATED ABBREVIATION [DMBA:15950] +synonym: "posteromedial cortical amygdalar nucleus" RELATED [NeuroNames:3250] +synonym: "posteromedial cortical amygdaloid nucleus" RELATED [NeuroNames:3250] +synonym: "posteromedial part of the cortical nucleus" RELATED [NeuroNames:3250] +xref: DMBA:15950 +xref: EMAPA:35700 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3250 +xref: MA:0002930 +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0002891 {source="EMAPA"} ! cortical amygdaloid nucleus + +[Term] +id: UBERON:0035004 +name: preputial swelling +xref: EMAPA:35702 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0005876 {source="EMAPA"} ! undifferentiated genital tubercle + +[Term] +id: UBERON:0035005 +name: preputial swelling of male +synonym: "prepuce of male" RELATED [EMAPA:29220] +xref: EMAPA:29220 +is_a: UBERON:0035004 ! preputial swelling +intersection_of: UBERON:0035004 ! preputial swelling +intersection_of: part_of UBERON:0003101 ! male organism +relationship: part_of UBERON:0006261 {source="EMAPA"} ! male genital tubercle + +[Term] +id: UBERON:0035006 +name: preputial swelling of female +synonym: "prepuce of female" RELATED [EMAPA:30478] +xref: EMAPA:30478 +is_a: UBERON:0035004 ! preputial swelling +intersection_of: UBERON:0035004 ! preputial swelling +intersection_of: part_of UBERON:0003100 ! female organism +relationship: part_of UBERON:0006233 {source="EMAPA"} ! female genital tubercle + +[Term] +id: UBERON:0035007 +name: nasal concha cartilage +synonym: "turbinal cartilage" EXACT [] +synonym: "turbinate bone primordium" EXACT [EMAPA:35890] +synonym: "turbinate cartilage condensation" EXACT [] +synonym: "unossified nasal turbinal" EXACT [] +synonym: "unossified nasal turbinate" EXACT [] +synonym: "unossified turbinate" EXACT [] +xref: EMAPA:35890 +is_a: UBERON:0003932 ! cartilage element of chondrocranium +is_a: UBERON:0035612 ! nasal turbinal +intersection_of: UBERON:0035612 ! nasal turbinal +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: has_potential_to_develop_into UBERON:0001762 ! turbinate bone + +[Term] +id: UBERON:0035011 +name: central gray substance +synonym: "central gray" RELATED [NeuroNames:1584] +synonym: "central gray substance" RELATED [NeuroNames:1584] +synonym: "central grey" RELATED [NeuroNames:1584] +synonym: "central grey substance" EXACT [FMA:83134] +synonym: "griseum centrale" RELATED LATIN [NeuroNames:1584] +synonym: "griseum periventriculare" RELATED LATIN [NeuroNames:1584] +synonym: "stratum griseum centrale" RELATED LATIN [NeuroNames:1584] +synonym: "substantia grisea centralis" EXACT [FMA:TA] +synonym: "substantia grisea centralis" RELATED LATIN [NeuroNames:1584] +xref: FMA:83134 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1584 +is_a: UBERON:0002020 {source="FMA"} ! gray matter + +[Term] +id: UBERON:0035013 +name: temporal cortex association area +synonym: "temporal association area" RELATED [] +synonym: "temporal association areas" RELATED [NeuroNames:1821] +synonym: "temporal association cortex" RELATED [NeuroNames:1821] +synonym: "ventral temporal association areas" RELATED [NeuroNames:1821] +xref: EMAPA:35852 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1821 +xref: MA:0000943 +xref: MBA:541 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0035015 ! association cortex +intersection_of: UBERON:0035015 ! association cortex +intersection_of: part_of UBERON:0016538 ! temporal cortex +relationship: part_of UBERON:0016538 ! temporal cortex + +[Term] +id: UBERON:0035014 +name: functional part of brain +def: "A brain region defined by functional criteria, e.g. auditory cortex, rather than by structural or histological criteria." [NLX:155513] +xref: NLX:155513 +is_a: UBERON:0002616 {source="NIFSTD"} ! regional part of brain + +[Term] +id: UBERON:0035015 +name: association cortex +def: "Region of the cerebral cortex that integrates diverse sensory or motor information for purposeful action." [NIFSTD:oen_0001107] +synonym: "association area" RELATED [NIFSTD:oen_0001107] +synonym: "association areas of cortex" RELATED [NeuroNames:1348] +synonym: "association cortex" RELATED [NeuroNames:1348] +synonym: "cortical association areas" RELATED [NeuroNames:1348] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1348 +xref: oen:0001107 +is_a: UBERON:0035014 {source="NIFSTD"} ! functional part of brain + +[Term] +id: UBERON:0035016 +name: tactile mechanoreceptor +synonym: "contact receptor" EXACT [FMA:85595] +xref: FMA:85595 +is_a: UBERON:0012449 ! mechanoreceptor + +[Term] +id: UBERON:0035017 +name: nociceptor +def: "Peripheral receptors for pain. Nociceptors include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli. All nociceptors are free nerve endings." [MESH:A08.800.550.700.650] +synonym: "nociceptor" RELATED [MESH:A08.800.550.700.650] +synonym: "pain receptor" RELATED [MESH:A08.800.550.700.650] +xref: MESH:A08.800.550.700.650 +is_a: UBERON:0012449 ! mechanoreceptor + +[Term] +id: UBERON:0035018 +name: thermoreceptor +def: "Cellular receptors which mediate the sense of temperature. Thermoreceptors in vertebrates are mostly located under the skin. In mammals there are separate types of thermoreceptors for cold and for warmth and NOCICEPTORS which detect cold or heat extreme enough to cause pain." [MESH:A08.800.550.700.840] +synonym: "thermoreceptor" RELATED [MESH:A08.800.550.700.840] +xref: http://linkedlifedata.com/resource/umls/id/C0039821 +xref: MESH:A08.800.550.700.840 +xref: NCIT:C13822 +is_a: UBERON:0012451 ! sensory receptor + +[Term] +id: UBERON:0035019 +name: inferior olive, beta nucleus +synonym: "beta subnucleus of the inferior olive" RELATED [NeuroNames:1755] +synonym: "inferior olive beta subnucleus" EXACT [MA:0001041] +synonym: "inferior olive, beta subnucleus" RELATED [NeuroNames:1755] +synonym: "IOBe" RELATED ABBREVIATION [DHBA:12602] +xref: DHBA:12602 +xref: EMAPA:37611 {source="MA:th"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1755 +xref: MA:0001041 +is_a: UBERON:0007244 ! inferior olivary nucleus + +[Term] +id: UBERON:0035020 +name: left vagus X nerve trunk +synonym: "anterior vagus X nerve trunk" RELATED [MA:0001151] +synonym: "left vagus neural trunk" EXACT [FMA:18157] +synonym: "trunk of left vagus" EXACT [FMA:18157] +xref: EMAPA:37798 {source="MA:th"} +xref: FMA:18157 +xref: MA:0001151 +is_a: UBERON:0003535 ! vagus X nerve trunk +intersection_of: UBERON:0003535 ! vagus X nerve trunk +intersection_of: in_left_side_of UBERON:0001016 ! nervous system +relationship: in_left_side_of UBERON:0001016 ! nervous system + +[Term] +id: UBERON:0035021 +name: right vagus X nerve trunk +synonym: "posterior vagus X nerve trunk" RELATED [MA:0001152] +synonym: "right vagus neural trunk" EXACT [FMA:18151] +synonym: "trunk of right vagus" EXACT [FMA:18151] +xref: EMAPA:37799 {source="MA:th"} +xref: FMA:18151 +xref: MA:0001152 +is_a: UBERON:0003535 ! vagus X nerve trunk +intersection_of: UBERON:0003535 ! vagus X nerve trunk +intersection_of: in_right_side_of UBERON:0001016 ! nervous system +relationship: in_right_side_of UBERON:0001016 ! nervous system + +[Term] +id: UBERON:0035022 +name: trunk of segmental spinal nerve +synonym: "segmental spinal nerve trunk" EXACT [MA:0001179] +xref: MA:0001179 +is_a: UBERON:0005476 ! spinal nerve trunk +intersection_of: UBERON:0002464 ! nerve trunk +intersection_of: part_of UBERON:0005197 ! segmental spinal nerve +relationship: part_of UBERON:0005197 ! segmental spinal nerve + +[Term] +id: UBERON:0035024 +name: lateral spinal nucleus +xref: DMBA:17690 +xref: EMAPA:37634 {source="MA:th"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3159 +xref: MA:0002756 +xref: NLX:144473 +is_a: UBERON:0011777 ! nucleus of spinal cord +relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord + +[Term] +id: UBERON:0035026 +name: amygdalohippocampal transition area +synonym: "AHTA" RELATED ABBREVIATION [DHBA:10380] +xref: DHBA:10380 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0034673 ! amygdalohippocampal area + +[Term] +id: UBERON:0035027 +name: amygdalohippocampal area, magnocellular division +synonym: "AHiAm" RELATED ABBREVIATION [HBA:265504452] +xref: HBA:265504452 +xref: PBA:10136 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0034673 ! amygdalohippocampal area + +[Term] +id: UBERON:0035028 +name: amygdalohippocampal area, parvocellular division +synonym: "AHiAp" RELATED ABBREVIATION [HBA:265504456] +xref: HBA:265504456 +xref: PBA:10137 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0034673 ! amygdalohippocampal area + +[Term] +id: UBERON:0035032 +name: abdominal oblique muscle +def: "Either the external or internal abdominal oblique muscles" [UBERON:cjm] +synonym: "oblique abdominal muscle" EXACT [MA:0003024] +xref: EMAPA:35603 +xref: MA:0003024 +is_a: UBERON:0002461 {is_inferred="true"} ! anterior abdominal wall muscle + +[Term] +id: UBERON:0035034 +name: eyelid epithelium +def: "An epithelium that is part of an eyelid [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:32758 +xref: MA:0003163 +is_a: UBERON:0015808 ! eye epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0001711 ! eyelid +relationship: part_of UBERON:0001711 ! eyelid + +[Term] +id: UBERON:0035036 +name: naris epithelium +def: "An epithelium that is part of a naris [Automatically generated definition]." [OBOL:automatic] +xref: EMAPA:35959 +xref: MA:0003172 +is_a: UBERON:0000483 ! epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0000003 ! naris +relationship: part_of UBERON:0000003 ! naris + +[Term] +id: UBERON:0035037 +name: jaw epithelium +xref: EMAPA:32904 +xref: MA:0003220 +is_a: UBERON:0003929 ! digestive tract epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:0011595 ! jaw region +relationship: part_of UBERON:0011595 ! jaw region + +[Term] +id: UBERON:0035038 +name: carpal tunnel +def: "The fibro-osseous passageway on the palmar side of the wrist that connects the distal forearm to the middle compartment of the deep plane of the palm." [http://en.wikipedia.org/wiki/Carpal_tunnel] +synonym: "carpal canal" EXACT [FMA:42352] +synonym: "carpel tunnel" RELATED [http://en.wikipedia.org/wiki/Carpal_tunnel] +xref: Carpal:tunnel +xref: FMA:42352 +is_a: UBERON:0004111 ! anatomical conduit +intersection_of: UBERON:0004111 ! anatomical conduit +intersection_of: conduit_for UBERON:0001148 ! median nerve +intersection_of: part_of UBERON:0004452 ! carpal region +relationship: conduit_for UBERON:0001148 ! median nerve +relationship: part_of UBERON:0004452 ! carpal region + +[Term] +id: UBERON:0035039 +name: rectal artery +synonym: "hemorrhoidal artery" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/277967008 +is_a: UBERON:0001637 ! artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0001052 ! rectum +relationship: supplies UBERON:0001052 ! rectum + +[Term] +id: UBERON:0035040 +name: superior rectal artery +def: "The superior rectal artery (superior hemorrhoidal artery) is an artery that descends into the pelvis to supply blood to the rectum." [http://en.wikipedia.org/wiki/Superior_rectal_artery] +synonym: "superior hemorrhoidal" RELATED [http://en.wikipedia.org/wiki/Superior_rectal_artery] +synonym: "superior hemorrhoidal artery" EXACT [FMA:14832] +synonym: "superior hemorrhoidal artery" RELATED [http://en.wikipedia.org/wiki/Superior_rectal_artery] +synonym: "superior rectal" RELATED [http://en.wikipedia.org/wiki/Superior_rectal_artery] +xref: FMA:14832 +xref: http://en.wikipedia.org/wiki/Superior_rectal_artery +xref: http://www.snomedbrowser.com/Codes/Details/244278008 +xref: NCIT:C33677 +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0035039 ! rectal artery +relationship: branching_part_of UBERON:0001183 {source="FMA"} ! inferior mesenteric artery +relationship: part_of UBERON:0001183 {source="FMA"} ! inferior mesenteric artery + +[Term] +id: UBERON:0035041 +name: deep temporal artery +def: "The deep temporal arteries, two in number, anterior and posterior, ascend between the Temporalis and the pericranium. They supply the muscle, and anastomose with the middle temporal artery. The anterior communicates with the lacrimal artery by means of small branches which perforate the zygomatic bone and great wing of the sphenoid." [http://en.wikipedia.org/wiki/Deep_temporal_arteries] +synonym: "anterior deep temporal artery" RELATED [http://en.wikipedia.org/wiki/Deep_temporal_arteries] +synonym: "deep temporal arteries" RELATED [http://en.wikipedia.org/wiki/Deep_temporal_arteries] +synonym: "deep temporal artery" RELATED [http://en.wikipedia.org/wiki/Deep_temporal_arteries] +synonym: "deep temporal branches" RELATED [http://en.wikipedia.org/wiki/Deep_temporal_arteries] +synonym: "posterior deep temporal artery" RELATED [http://en.wikipedia.org/wiki/Deep_temporal_arteries] +xref: FMA:49742 +xref: http://en.wikipedia.org/wiki/Deep_temporal_arteries +xref: http://www.snomedbrowser.com/Codes/Details/147965009 +is_a: UBERON:0001632 ! temporal artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001632 ! temporal artery +intersection_of: part_of UBERON:0035551 ! deep vasculature +relationship: branching_part_of UBERON:0001616 {source="FMA"} ! maxillary artery +relationship: part_of UBERON:0001616 ! maxillary artery +relationship: part_of UBERON:0035551 ! deep vasculature + +[Term] +id: UBERON:0035042 +name: middle temporal artery +def: "The middle temporal artery arises immediately above the zygomatic arch, and, perforating the temporal fascia, gives branches to the Temporalis, anastomosing with the deep temporal branches of the internal maxillary. It occasionally gives off a zygomaticoC6rbital branch, which runs along the upper border of the zygomatic arch, between the two layers of the temporal fascia, to the lateral angle of the orbit." [http://en.wikipedia.org/wiki/Middle_temporal_artery] +synonym: "middle temporal artery" RELATED [http://en.wikipedia.org/wiki/Middle_temporal_artery] +xref: FMA:49666 +xref: http://en.wikipedia.org/wiki/Middle_temporal_artery +xref: http://www.snomedbrowser.com/Codes/Details/146854006 +is_a: UBERON:0001632 ! temporal artery +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: branching_part_of UBERON:0001614 {source="FMA"} ! superficial temporal artery +relationship: part_of UBERON:0001614 ! superficial temporal artery + +[Term] +id: UBERON:0035043 +name: temporal branch of lateral pretrosal artery +def: "Part of lateral pretrosal artery which supplies blood to the eyelids." [AAO:0010495] +synonym: "temporal artery" BROAD [AAO:0010495] +xref: AAO:0010495 +is_a: UBERON:0001632 ! temporal artery +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0014770 ! palpebral artery +relationship: branching_part_of UBERON:3010494 ! lateral pretrosal artery +relationship: part_of UBERON:3010494 ! lateral pretrosal artery + +[Term] +id: UBERON:0035044 +name: olfactory cortex layer 3 +def: "Deepest layer of olfactory cortex" [NLX:152611] +xref: NLX:152611 +is_a: UBERON:0011215 ! central nervous system cell part cluster +is_a: UBERON:0022303 ! nervous system cell part layer +intersection_of: UBERON:0022303 ! nervous system cell part layer +intersection_of: immediately_deep_to UBERON:0022318 ! olfactory cortex layer 2 +relationship: immediately_deep_to UBERON:0022318 ! olfactory cortex layer 2 +relationship: part_of UBERON:0002894 {source="nlx"} ! olfactory cortex + +[Term] +id: UBERON:0035045 +name: parotid gland intralobular duct +def: "Any of the tubular canals of the parotid gland located within the parenchymal (secretory) tissue i.e. within lobules; both intercalated and striated (secretory) ducts are intralobular ducts." [MP:0013746] +is_a: UBERON:0001837 ! duct of salivary gland +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0014719 ! intralobular duct +intersection_of: UBERON:0014719 ! intralobular duct +intersection_of: part_of UBERON:0001831 ! parotid gland +relationship: part_of UBERON:0001831 ! parotid gland + +[Term] +id: UBERON:0035046 +name: parotid gland intercalated duct +def: "Any of the small intralobular tubular canal that leads directly from the serous acinus of the parotid gland to a striated (secretory) duct; in mouse, the intercalated ducts are short and narrow and are lined by low cuboidal epithelial cells with large central nuclei; they secrete bicarbonate ion into and absorb chloride ion from the acinar product." [MP:0013747] +is_a: UBERON:0014727 ! intercalated duct of salivary gland +is_a: UBERON:0035045 ! parotid gland intralobular duct +intersection_of: UBERON:0014725 ! intercalated duct +intersection_of: part_of UBERON:0001831 ! parotid gland + +[Term] +id: UBERON:0035047 +name: parotid gland striated duct +def: "Any of the intralobular secretory duct of the parotid gland which connects an intercalated duct to an interlobular excretory duct; striated ducts are lined by cuboidal to columnar acidophilic cells and are so-named because of characteristic striations in the basal portions of the cells which are due to the alignment of mitochondria between deep infoldings of the basal cell membrane; the nucleus is in the central part of the cell above the striations; as they approach the excretory ducts, their diameter may exceed that of the acini; striated ducts reabsorb sodium and secrete potassium." [MP:0013748] +is_a: UBERON:0014729 ! striated duct of salivary gland +is_a: UBERON:0035045 ! parotid gland intralobular duct +intersection_of: UBERON:0014729 ! striated duct of salivary gland +intersection_of: part_of UBERON:0001831 ! parotid gland + +[Term] +id: UBERON:0035048 +name: parotid gland excretory duct +def: "Any of the interlobular excretory ducts of the parotid gland which are found in the connective tissue septa and formed by the union of several intralobular striated (secretory) ducts; ultimately, the excretory ducts of the parotid gland coalesce and form a single main excretory duct (Stensen's duct) that opens into the oral cavity; excretory ducts do not change the secretory product." [MP:0013750] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0035049 ! excretory duct of salivary gland +intersection_of: UBERON:0035050 ! excretory duct +intersection_of: part_of UBERON:0001831 ! parotid gland +relationship: part_of UBERON:0001831 ! parotid gland + +[Term] +id: UBERON:0035049 +name: excretory duct of salivary gland +def: "Any of the interlobular excretory ducts of a salivary gland which are found in the connective tissue septa and formed by the union of several intralobular striated (secretory) ducts[MP,generalized]." [MP:0013750] +xref: FMA:60052 +is_a: UBERON:0001837 ! duct of salivary gland +is_a: UBERON:0035050 ! excretory duct +intersection_of: UBERON:0035050 ! excretory duct +intersection_of: part_of UBERON:0001044 ! saliva-secreting gland + +[Term] +id: UBERON:0035050 +name: excretory duct +is_a: UBERON:0000058 ! duct + +[Term] +id: UBERON:0035053 +name: interlobular duct of salivary gland +xref: FMA:60053 +is_a: UBERON:0014716 ! interlobular duct +is_a: UBERON:0035049 ! excretory duct of salivary gland +intersection_of: UBERON:0014716 ! interlobular duct +intersection_of: part_of UBERON:0001044 ! saliva-secreting gland + +[Term] +id: UBERON:0035073 +name: duct of eccrine sweat gland +synonym: "ductal part of eccrine sweat gland" EXACT [FMA:70617] +xref: FMA:70617 +is_a: UBERON:0000058 ! duct +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000058 ! duct +intersection_of: part_of UBERON:0000423 ! eccrine sweat gland +relationship: part_of UBERON:0000423 ! eccrine sweat gland + +[Term] +id: UBERON:0035074 +name: duct of apocrine sweat gland +synonym: "ductal part of apocrine sweat gland" EXACT [FMA:70643] +xref: FMA:70643 +is_a: UBERON:0000058 ! duct +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000058 ! duct +intersection_of: part_of UBERON:0000382 ! apocrine sweat gland +relationship: part_of UBERON:0000382 ! apocrine sweat gland + +[Term] +id: UBERON:0035075 +name: thymus subunit +synonym: "lobe or lobule of thymus" RELATED [] +xref: FMA:71193 +is_a: UBERON:0000063 ! organ subunit +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000063 ! organ subunit +intersection_of: part_of UBERON:0002046 ! thyroid gland +relationship: part_of UBERON:0002046 ! thyroid gland + +[Term] +id: UBERON:0035076 +name: parotid gland myoepithelium +def: "epithelium that consists of stellate-shaped contractile cells with long dendritic processes that surround the secretory acini and intercalated ducts of the parotid gland, usually found in the glandular epithelium as a thin layer above the basement membrane but generally beneath the luminal cells; they display features of both smooth muscle and epithelium, such as numerous microfilaments with focal densities in the cytoplasmic processes, and desmosomes which attach them to the epithelial cells; their functions include contraction when the gland is stimulated to secrete, compressing or reinforcing the underlying parenchymal cells, thus aiding in the expulsion of saliva and preventing damage to the other cells" [MGI:anna] +xref: EMAPA:37934 {source="MA:th"} +is_a: UBERON:0000420 ! myoepithelium +is_a: UBERON:0003360 ! epithelium of parotid gland +intersection_of: UBERON:0000420 ! myoepithelium +intersection_of: part_of UBERON:0001831 ! parotid gland + +[Term] +id: UBERON:0035077 +name: lateral nasal gland +def: "Any of the lateral nasal glands (the largest nasal secretory glands in rodents) which surround the maxillary sinus located in the lateral wall adjacent to each nasal passage and are characterized by cytologic features similar to those described for the major serous salivary glands; secretory contents of the LNG drain into the nasal vestibule; the LNG is a major site for the synthesis and secretion of odorant-binding proteins that serve as odorant carriers in nasal mucus; it also, synthesizes large amounts of immunoglobulin A, which is important for immune defense of the upper respiratory tract, and testosterone and salivary androgen-binding proteins, which are likely important in olfaction and reproductive behavior" [MP:0013582] +synonym: "glandula nasalis lateralis" EXACT LATIN [MP:0013582] +synonym: "LNG" RELATED ABBREVIATION [MP:0013582] +synonym: "Steno gland" EXACT [MP:0013582] +synonym: "Steno's gland" EXACT [MP:0013582] +xref: EMAPA:37894 {source="MA:th"} +is_a: UBERON:0012278 ! gland of nasal mucosa + +[Term] +id: UBERON:0035078 +name: parotid gland interlobular duct +def: "Any of the excretory ducts of the parotid gland which are found in the connective tissue septa i.e. between lobules" [MP:0013749] +is_a: UBERON:0035048 ! parotid gland excretory duct +is_a: UBERON:0035053 ! interlobular duct of salivary gland +intersection_of: UBERON:0014716 ! interlobular duct +intersection_of: part_of UBERON:0001831 ! parotid gland + +[Term] +id: UBERON:0035079 +name: deep intraparotid lymph node +def: "The intraglandular deep parotid lymph nodes are a group of lymph nodes found inside the parotid gland." [http://en.wikipedia.org/wiki/Intraglandular_deep_parotid_lymph_nodes] +synonym: "deep intraparotid node" EXACT [] +synonym: "intraglandular deep parotid lymph nodes" EXACT [] +xref: http://en.wikipedia.org/wiki/Intraglandular_deep_parotid_lymph_nodes +xref: http://www.snomedbrowser.com/Codes/Details/75040000 +is_a: UBERON:0035080 ! intraparotid lymph node + +[Term] +id: UBERON:0035080 +name: intraparotid lymph node +synonym: "intraparotid node" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/27053001 +is_a: UBERON:0015870 ! lymph node of head + +[Term] +id: UBERON:0035081 +name: caudofemoralis longus +synonym: "caudofemoralis longus muscle" EXACT [] +synonym: "M. caudofemoralis longus" EXACT [] +is_a: UBERON:0013221 ! caudofemoralis +intersection_of: UBERON:0013221 ! caudofemoralis +intersection_of: has_muscle_insertion UBERON:0000981 ! femur +relationship: has_muscle_insertion UBERON:0000981 ! femur +relationship: present_in_taxon NCBITaxon:28376 + +[Term] +id: UBERON:0035082 +name: caudofemoralis brevis +synonym: "caudofemoralis brevis muscle" EXACT [] +synonym: "M. caudofemoralis brevis" EXACT [] +is_a: UBERON:0013221 ! caudofemoralis +intersection_of: UBERON:0013221 ! caudofemoralis +intersection_of: attaches_to UBERON:0001273 ! ilium +relationship: attaches_to UBERON:0001273 {notes="fossa on lower edge of ilium"} ! ilium +relationship: present_in_taxon NCBITaxon:28376 + +[Term] +id: UBERON:0035083 +name: transverse process-bearing vertebra +def: "A vertebra that has a transverse process." [http://orcid.org/0000-0002-6601-2165] +synonym: "pygal vertebra" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/22753107] +synonym: "TP vertebra" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/22753107] +is_a: UBERON:0002412 ! vertebra +intersection_of: UBERON:0002412 ! vertebra +intersection_of: has_part UBERON:0001077 ! transverse process of vertebra +disjoint_from: UBERON:0035084 ! non-transverse process-bearing vertebra +relationship: has_part UBERON:0001077 ! transverse process of vertebra + +[Term] +id: UBERON:0035084 +name: non-transverse process-bearing vertebra +def: "A vertebra that does not have a transverse process." [http://orcid.org/0000-0002-6601-2165] +synonym: "NTP vertebra" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/22753107] +synonym: "postpygal vertebra" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/22753107] +is_a: UBERON:0002412 ! vertebra + +[Term] +id: UBERON:0035085 +name: anatomical plane +def: "A flat anatomical 2D surface that bisects an anatomical structure or an anatomical space." [CARO:0001013, FMA:242982, http://en.wikipedia.org/wiki/Plane_(geometry), http://orcid.org/0000-0002-6601-2165] +comment: All anatomical planes are fiat anatomical boundaries - no morphological boundary could ever be a perfect plane. +synonym: "fiat anatomical surface" RELATED [FMA:242982] +xref: CARO:0001013 +xref: FMA:242982 +is_a: UBERON:0006984 {source="FMA"} ! anatomical surface + +[Term] +id: UBERON:0035086 +name: plane of autotomy +def: "An anatomical plane that bisects a zone of weakness in an appendage. When autotamy occurs, the appendage divides along this plane." [http://en.wikipedia.org/wiki/Autotomy, http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0035085 ! anatomical plane +relationship: part_of UBERON:0000026 ! appendage + +[Term] +id: UBERON:0035087 +name: fracture plane +def: "A plane of autotomy that divides an appendage through a bone." [http://en.wikipedia.org/wiki/Autotomy, http://orcid.org/0000-0002-6601-2165] +synonym: "plane of autotomy bisecting bone" EXACT [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0035086 ! plane of autotomy + +[Term] +id: UBERON:0035088 +name: vertebral fracture plane +def: "A plane of autotomy that divides an appendage through a vertebral bone." [http://en.wikipedia.org/wiki/Autotomy, http://orcid.org/0000-0002-6601-2165] +synonym: "plane of autotomy bisecting vertebral bone" EXACT [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0035087 ! fracture plane + +[Term] +id: UBERON:0035089 +name: plane of autotomy bisecting joint +def: "A plane of autotomy that divides an appendage in the space between appendage bones." [http://en.wikipedia.org/wiki/Autotomy, http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0035086 ! plane of autotomy + +[Term] +id: UBERON:0035090 +name: plane of autotomy bisecting intervertebral joint +def: "A plane of autotomy that divides an appendage in the space between vertebrae." [http://en.wikipedia.org/wiki/Autotomy, http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0035089 ! plane of autotomy bisecting joint + +[Term] +id: UBERON:0035091 +name: extrinsic post-anal tail muscle +def: "A post-anal tail that attaches outside the tail." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0003665 ! post-anal tail muscle +intersection_of: UBERON:0003665 ! post-anal tail muscle +intersection_of: attaches_to UBERON:0010742 ! bone of pelvic complex +relationship: attaches_to UBERON:0010742 ! bone of pelvic complex + +[Term] +id: UBERON:0035092 +name: spinalis caudalis muscle +def: "A muscle that originates via thin tendons from the proximal and dorsal aspects of the neural spines and inserts via fleshy fibers onto the lateral aspect of the base of the neural arch" [http://www.ncbi.nlm.nih.gov/pubmed/22753107] +synonym: "M. spinalis caudalis" EXACT [] +synonym: "spinalis caudalis" EXACT [] +is_a: UBERON:0003897 ! axial muscle +is_a: UBERON:0035091 {source="http://www.ncbi.nlm.nih.gov/pubmed/22753107"} ! extrinsic post-anal tail muscle +relationship: has_muscle_insertion UBERON:0003861 ! neural arch +relationship: has_muscle_origin UBERON:0001076 ! neural spine +relationship: part_of UBERON:0006071 ! caudal region +relationship: present_in_taxon NCBITaxon:28376 + +[Term] +id: UBERON:0035093 +name: extensor caudae muscle +synonym: "caudal extensor muscle" EXACT [] +is_a: UBERON:0035091 {source="http://www.ncbi.nlm.nih.gov/pubmed/22753107"} ! extrinsic post-anal tail muscle + +[Term] +id: UBERON:0035094 +name: extensor caudae medialis muscle +def: "A muscle that originates via thin tendons from the distal and dorsal aspects of the neural spines. The tendons course proximomedially to distolaterally and give rise to fleshy fibers that insert onto the lateral aspect of the neural arches of each of the vertebrae it crosses. The m. extensor caudae medialis is a continuation of m. semispinalis dorsi into the tail." [http://www.ncbi.nlm.nih.gov/pubmed/22753107] +synonym: "extensor caudae medialis" EXACT [] +synonym: "M. externsor caudae medialis" EXACT [] +is_a: UBERON:0035093 ! extensor caudae muscle +intersection_of: UBERON:0035093 ! extensor caudae muscle +intersection_of: has_muscle_insertion UBERON:0003861 ! neural arch +intersection_of: has_muscle_origin UBERON:0001076 ! neural spine +relationship: has_muscle_insertion UBERON:0003861 ! neural arch +relationship: has_muscle_origin UBERON:0001076 ! neural spine + +[Term] +id: UBERON:0035095 +name: extensor caudae lateralis muscle +def: "A muscle that originates via a robust tendon from a tuberosity on the cranial aspect of the iliac crest and via fleshy fibers from the caudoventral aspect of the pelvis, the lateral aspects of the transverse processes of Ca2-8 or 9, and the horizontal intramuscular septum." [http://www.ncbi.nlm.nih.gov/pubmed/22753107] +synonym: "extensor caudae lateralis" EXACT [] +synonym: "M. externsor caudae lateralis" EXACT [] +is_a: UBERON:0035093 ! extensor caudae muscle +intersection_of: UBERON:0035093 ! extensor caudae muscle +intersection_of: has_muscle_insertion UBERON:0035096 ! fascia of tail +intersection_of: has_muscle_origin UBERON:0014437 ! iliac crest +relationship: has_muscle_insertion UBERON:0035096 ! fascia of tail +relationship: has_muscle_origin UBERON:0014437 ! iliac crest + +[Term] +id: UBERON:0035096 +name: fascia of tail +is_a: UBERON:0003599 ! tail connective tissue +is_a: UBERON:0008982 ! fascia +intersection_of: UBERON:0008982 ! fascia +intersection_of: part_of UBERON:0007812 ! post-anal tail + +[Term] +id: UBERON:0035097 +name: iliocaudalis muscle +def: "A muscle that attaches to the iliac crest and to a caudal vertebra." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/22753107] +synonym: "iliocaudalis" EXACT [] +synonym: "M. iliocaudalis" EXACT [] +is_a: UBERON:0003897 ! axial muscle +is_a: UBERON:0035091 {source="http://www.ncbi.nlm.nih.gov/pubmed/22753107"} ! extrinsic post-anal tail muscle +intersection_of: UBERON:0001630 ! muscle organ +intersection_of: attaches_to UBERON:0001095 ! caudal vertebra +intersection_of: attaches_to UBERON:0014437 ! iliac crest +intersection_of: part_of UBERON:0006071 ! caudal region +relationship: attaches_to UBERON:0014437 ! iliac crest +relationship: part_of UBERON:0006071 ! caudal region + +[Term] +id: UBERON:0035098 +name: hemipenis transversus muscle +def: "A muscle that overlies the hemipenis." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/22753107] +synonym: "M. transversus penis" RELATED [] +synonym: "transversus penis" RELATED [] +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0035091 {source="http://www.ncbi.nlm.nih.gov/pubmed/22753107"} ! extrinsic post-anal tail muscle +intersection_of: UBERON:0001630 ! muscle organ +intersection_of: part_of UBERON:0008812 ! hemipenis +relationship: part_of UBERON:0008812 ! hemipenis + +[Term] +id: UBERON:0035099 +name: transversus perinei muscle +def: "A muscle in females that overlies the soft tissue related to the cloaca, where the hemipenes are located in males." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/22753107] +synonym: "M. transversus perinei" RELATED [] +synonym: "transversus perinei" RELATED [] +is_a: UBERON:0035091 {source="http://www.ncbi.nlm.nih.gov/pubmed/22753107"} ! extrinsic post-anal tail muscle +intersection_of: UBERON:0001630 ! muscle organ +intersection_of: sexually_homologous_to UBERON:0035098 ! hemipenis transversus muscle +relationship: sexually_homologous_to UBERON:0035098 ! hemipenis transversus muscle + +[Term] +id: UBERON:0035100 +name: retractor penis magnus muscle +def: "A tube-like muscle attaches to the distal tip of the hemipenis and inserts onto the transverse processes of a caudal vertebra." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/22753107] +synonym: "M. retractor penis magnus" RELATED [] +synonym: "retractor penis magnus" RELATED [] +is_a: UBERON:0035091 {source="http://www.ncbi.nlm.nih.gov/pubmed/22753107"} ! extrinsic post-anal tail muscle +intersection_of: UBERON:0001630 ! muscle organ +intersection_of: attaches_to UBERON:0008812 ! hemipenis +intersection_of: attaches_to UBERON:0035102 ! transverse process of caudal vertebra +relationship: attaches_to UBERON:0008812 ! hemipenis +relationship: attaches_to UBERON:0035102 ! transverse process of caudal vertebra + +[Term] +id: UBERON:0035102 +name: transverse process of caudal vertebra +def: "A transverse process that is part of a caudal vertebra" [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0001077 ! transverse process of vertebra +intersection_of: UBERON:0001077 ! transverse process of vertebra +intersection_of: part_of UBERON:0001095 ! caudal vertebra +relationship: part_of UBERON:0001095 ! caudal vertebra + +[Term] +id: UBERON:0035103 +name: perineal body smooth muscle muscle tissue +synonym: "perineal body muscle" EXACT [EMAPA:18923] +xref: EMAPA:18923 +is_a: UBERON:0004231 ! anal region smooth muscle +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0006654 ! perineal body +relationship: part_of UBERON:0004486 ! musculature of perineum +relationship: part_of UBERON:0006654 ! perineal body + +[Term] +id: UBERON:0035104 +name: raphe of penis +synonym: "penile raphe" EXACT [FMA:19646] +synonym: "raphe penis" EXACT LATIN [FMA:19646, FMA:TA] +xref: FMA:19646 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0034929 ! external soft tissue zone +relationship: intersects_midsagittal_plane_of UBERON:0000989 ! penis +relationship: part_of UBERON:0000989 ! penis +relationship: part_of UBERON:0035106 ! raphe of perineum + +[Term] +id: UBERON:0035105 +name: sac of scrotum +def: "Any of the two testis-carrying compartments of the scrotum." [http://orcid.org/0000-0002-6601-2165] +synonym: "scrotal comartment" EXACT [] +synonym: "scrotal sac" EXACT [FMA:18251] +synonym: "testis comartment" EXACT [] +xref: FMA:18251 +is_a: UBERON:0000063 ! organ subunit +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +relationship: has_component UBERON:0000473 {minCardinality="1", maxCardinality="1"} ! testis +relationship: part_of UBERON:0001300 ! scrotum + +[Term] +id: UBERON:0035106 +name: raphe of perineum +def: "The perineal raphe extends from the anus, through the mid-line of the scrotum (scrotal raphe) and upwards through the posterior mid-line aspect of the penis (penile raphe)." [http://en.wikipedia.org/wiki/Perineal_raphe] +synonym: "perineal raphe" EXACT [FMA:20244] +synonym: "raphe perinealis" EXACT LATIN [http://en.wikipedia.org/wiki/Perineal_raphe] +synonym: "raphe perinei" EXACT LATIN [http://en.wikipedia.org/wiki/Perineal_raphe] +xref: FMA:20244 +xref: Perineal:raphe +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0034929 ! external soft tissue zone +relationship: develops_from UBERON:0004876 {source="Wikipedia"} ! urogenital fold +relationship: intersects_midsagittal_plane_of UBERON:0002356 ! perineum +relationship: part_of UBERON:0002356 ! perineum + +[Term] +id: UBERON:0035108 +name: temporalis fascia +def: "The temporal fascia covers the Temporalis muscle. It is a strong, fibrous investment, covered, laterally, by the Auricularis anterior and superior, by the galea aponeurotica, and by part of the Orbicularis oculi. The superficial temporal vessels and the auriculotemporal nerve cross it from below upward. Above, it is a single layer, attached to the entire extent of the superior temporal line; but below, where it is fixed to the zygomatic arch, it consists of two layers, one of which is inserted into the lateral, and the other into the medial border of the arch. A small quantity of fat, the orbital branch of the superficial temporal artery, and a filament from the zygomatic branch of the maxillary nerve, are contained between these two layers. It affords attachment by its deep surface to the superficial fibers of the Temporalis." [http://en.wikipedia.org/wiki/Temporal_fascia] +comment: Request new term but the definition needs revision. +synonym: "fascia of temporalis" EXACT [FMA:53996] +synonym: "temporal fascia" EXACT [MFMO:0000105] +synonym: "temporalis fascia" EXACT [FMA:53996] +xref: FMA:53996 +xref: MFMO:0000105 +xref: Temporal:fascia +is_a: UBERON:0003566 ! head connective tissue +is_a: UBERON:0008982 ! fascia +relationship: part_of UBERON:0001456 {source="cjm"} ! face + +[Term] +id: UBERON:0035109 +name: plantar nerve +def: "A nerve that innervates the sole of the foot. Planar nerves arise from the posterior branch of the tibial nerve." [http://en.wikipedia.org/wiki/Plantar_nerve, http://orcid.org/0000-0002-6601-2165] +comment: Divided into medial and plantar based on the location of the foot supplied +synonym: "nerve, plantar" RELATED [] +xref: http://linkedlifedata.com/resource/umls/id/C0446824 +xref: http://www.snomedbrowser.com/Codes/Details/181074000 +xref: https://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray834.svg/180px-Gray834.svg.png +xref: NCIT:C77674 +xref: Plantar:nerve +is_a: UBERON:0003431 ! leg nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: innervates UBERON:0008338 ! plantar part of pes +relationship: branching_part_of UBERON:0001323 ! tibial nerve +relationship: innervates UBERON:0008338 ! plantar part of pes +relationship: part_of UBERON:0001323 ! tibial nerve + +[Term] +id: UBERON:0035110 +name: lateral plantar nerve +def: "A plantar nerve that supplies the lateral side of the plantar part of the foot, including pedal digit 5." [http://en.wikipedia.org/wiki/Lateral_plantar_nerve, http://orcid.org/0000-0002-6601-2165] +synonym: "external plantar nerve" EXACT [FMA:44724] +synonym: "nervus plantaris lateralis" EXACT LATIN [http://en.wikipedia.org/wiki/Lateral_plantar_nerve] +xref: FMA:44724 +xref: http://en.wikipedia.org/wiki/Lateral_plantar_nerve +xref: http://www.snomedbrowser.com/Codes/Details/181083005 +is_a: UBERON:0035109 ! plantar nerve +intersection_of: UBERON:0035109 ! plantar nerve +intersection_of: innervates UBERON:0003635 ! pedal digit 5 +disjoint_from: UBERON:0035111 {source="lexical"} ! medial plantar nerve +relationship: innervates UBERON:0003635 ! pedal digit 5 + +[Term] +id: UBERON:0035111 +name: medial plantar nerve +def: "A plantar nerve that supplies the medial side of the plantar part of the foot, including pedal digit 1." [http://en.wikipedia.org/wiki/Lateral_plantar_nerve, http://orcid.org/0000-0002-6601-2165] +synonym: "internal plantar nerve" EXACT [FMA:44716] +synonym: "nervus plantaris medialis" EXACT LATIN [http://en.wikipedia.org/wiki/Medial_plantar_nerve] +xref: FMA:44716 +xref: http://en.wikipedia.org/wiki/Medial_plantar_nerve +xref: http://www.snomedbrowser.com/Codes/Details/181082000 +is_a: UBERON:0035109 ! plantar nerve +intersection_of: UBERON:0035109 ! plantar nerve +intersection_of: innervates UBERON:0003631 ! pedal digit 1 +relationship: innervates UBERON:0003631 ! pedal digit 1 + +[Term] +id: UBERON:0035112 +name: intrinsic muscle +def: "Any of the muscles that are entirely within the body part or segment moved by them." [http://medical-dictionary.thefreedictionary.com/intrinsic+muscles] +subset: grouping_class +is_a: UBERON:0014892 ! skeletal muscle organ + +[Term] +id: UBERON:0035113 +name: central part of mediodorsal nucleus of the thalamus +synonym: "MDc" RELATED ABBREVIATION [MBA:617] +synonym: "mediodorsal nucleus of the thalamus, central part" EXACT [MBA:617] +xref: MBA:617 +is_a: UBERON:0019269 ! gray matter of diencephalon +relationship: part_of UBERON:0002739 {source="MBA"} ! medial dorsal nucleus of thalamus + +[Term] +id: UBERON:0035114 +name: lateral part of mediodorsal nucleus of the thalamus +synonym: "MDl" RELATED ABBREVIATION [MBA:626] +synonym: "mediodorsal nucleus of the thalamus, lateral part" EXACT [MBA:626] +xref: MBA:626 +is_a: UBERON:0019269 ! gray matter of diencephalon +relationship: part_of UBERON:0002739 {source="MBA"} ! medial dorsal nucleus of thalamus + +[Term] +id: UBERON:0035115 +name: diastema between central incisors +def: "A space or gap between the left and right central incisors, on either the upper or lower jaw." [http://orcid.org/0000-0002-6601-2165] +synonym: "interdental space, central incisors" EXACT [] +synonym: "midline diastema" EXACT [] +is_a: UBERON:0035119 ! diastema between incisors +intersection_of: UBERON:0035119 ! diastema between incisors +intersection_of: adjacent_to UBERON:0018551 {minCardinality="2", maxCardinality="2"} ! central incisor tooth +relationship: adjacent_to UBERON:0018551 ! central incisor tooth + +[Term] +id: UBERON:0035116 +name: diastema between upper central incisors +def: "A space or gap between the left and right central incisors on the upper jaw." [http://orcid.org/0000-0002-6601-2165] +synonym: "interdental space between maxillary central incisors" EXACT [] +synonym: "interdental space, upper central incisors" EXACT [] +synonym: "midline maxillary diastema" EXACT [] +is_a: UBERON:0035115 ! diastema between central incisors +intersection_of: UBERON:0035115 ! diastema between central incisors +intersection_of: part_of UBERON:0001709 ! upper jaw region +relationship: adjacent_to UBERON:0018603 {minCardinality="2", maxCardinality="2"} ! upper central incisor tooth +relationship: intersects_midsagittal_plane_of UBERON:0003277 ! skeleton of upper jaw +relationship: part_of UBERON:0003277 ! skeleton of upper jaw + +[Term] +id: UBERON:0035117 +name: diastema between lower central incisors +def: "A space or gap between the left and right central incisors on the lower jaw." [http://orcid.org/0000-0002-6601-2165] +synonym: "interdental space between mandibular central incisors" EXACT [] +synonym: "interdental space, lower central incisors" EXACT [] +synonym: "midline mandibular diastema" EXACT [] +is_a: UBERON:0035115 ! diastema between central incisors +intersection_of: UBERON:0035115 ! diastema between central incisors +intersection_of: part_of UBERON:0001710 ! lower jaw region +relationship: adjacent_to UBERON:0018601 {minCardinality="2", maxCardinality="2"} ! lower central incisor tooth +relationship: intersects_midsagittal_plane_of UBERON:0003278 ! skeleton of lower jaw +relationship: part_of UBERON:0003278 ! skeleton of lower jaw + +[Term] +id: UBERON:0035118 +name: material entity in digestive tract +def: "Any material entity that is located in the digestive tract. This includes undigested food and liquid as well as unexcreted waste products. It also includes other entities such as ingested stones used to aid digestion. Any microbial cells or cell populations are also included." [https://github.com/EnvironmentOntology/envo/issues/110] +synonym: "digestive tract contents" EXACT PLURAL [] +synonym: "ingested material entity" RELATED [] +is_a: UBERON:0000061 ! anatomical structure +intersection_of: UBERON:0000061 ! anatomical structure +intersection_of: located_in UBERON:0006909 ! lumen of digestive tract +relationship: located_in UBERON:0006909 ! lumen of digestive tract + +[Term] +id: UBERON:0035119 +name: diastema between incisors +def: "A space or gap any two incisors. This may be a midline diastema between central incisors, or a diastema located entirely in a single jaw quadrant between lateral incisors." [http://orcid.org/0000-0002-6601-2165] +synonym: "incisor diastema" EXACT [] +synonym: "interdental space, incisors" EXACT [] +is_a: UBERON:0012111 ! diastema +intersection_of: UBERON:0012111 ! diastema +intersection_of: adjacent_to UBERON:0001098 {minCardinality="2", maxCardinality="2"} ! incisor tooth +relationship: adjacent_to UBERON:0001098 ! incisor tooth +relationship: intersects_midsagittal_plane_of UBERON:0001708 ! jaw skeleton + +[Term] +id: UBERON:0035120 +name: fauces +def: "lateral walls of the oropharynx that are located medial to the palatoglossal folds" [http://www.avdc.org/Nomenclature.pdf] +xref: FMA:55019 +xref: http://www.snomedbrowser.com/Codes/Details/361362001 +is_a: UBERON:0000328 ! gut wall +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: part_of UBERON:0001729 ! oropharynx + +[Term] +id: UBERON:0035122 +name: interincisive suture +def: "median palatine suture of the palatine processes of the maxillary bones, and the median suture of the palatine bones" [http://www.avdc.org/Nomenclature.pdf] +synonym: "incisive suture" RELATED [FMA:75777] +synonym: "midline of hard palate" RELATED [] +xref: FMA:75777 +xref: http://www.snomedbrowser.com/Codes/Details/245781007 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4200215 ! suture +relationship: intersects_midsagittal_plane_of UBERON:0003216 ! hard palate +relationship: part_of UBERON:0003216 ! hard palate + +[Term] +id: UBERON:0035123 +name: palatomaxillary suture +def: "line of union, in the floor of the orbit, between the orbital process of the palatine bone and the orbital surface of the maxilla." [http://medical-dictionary.thefreedictionary.com/palatomaxillary+suture] +synonym: "palatomaxillary suture of skull" EXACT [FMA:52964] +xref: FMA:52964 +xref: Palatomaxillary:suture +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4200215 ! suture +intersection_of: UBERON:4200215 ! suture +intersection_of: connects UBERON:0001682 ! palatine bone +intersection_of: connects UBERON:0002397 ! maxilla +intersection_of: part_of UBERON:0001697 ! orbit of skull +relationship: connects UBERON:0001682 ! palatine bone +relationship: connects UBERON:0002397 ! maxilla +relationship: part_of UBERON:0001697 ! orbit of skull + +[Term] +id: UBERON:0035124 +name: palatoethmoidal suture +def: "A line of junction of the orbital process of the palatine bone and the orbital plate of the ethmoid." [http://medical-dictionary.thefreedictionary.com/palatoethmoidal+suture] +synonym: "palato-ethmoidal suture" EXACT [FMA:52965] +synonym: "palatoethmoidal suture of skull" EXACT [FMA:52965] +synonym: "sutura palatoethmoidalis" EXACT LATIN [FMA:52965, FMA:TA] +xref: FMA:52965 +is_a: UBERON:4200215 ! suture +intersection_of: UBERON:4200215 ! suture +intersection_of: connects UBERON:0001679 ! ethmoid bone +intersection_of: connects UBERON:0001682 ! palatine bone +relationship: connects UBERON:0001679 ! ethmoid bone +relationship: connects UBERON:0001682 ! palatine bone + +[Term] +id: UBERON:0035126 +name: transverse palatine suture +def: "the line of junction between the processes of the maxilla and the horizontal parts of the palatine bones that form the hard palate." [http://medical-dictionary.thefreedictionary.com/transverse+palatine+suture] +synonym: "transverse palatine suture of skull" EXACT [FMA:52971] +xref: FMA:52971 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4200215 ! suture +intersection_of: UBERON:4200215 ! suture +intersection_of: connects UBERON:0002397 ! maxilla +intersection_of: connects UBERON:0018242 ! palatine bone horizontal plate +relationship: connects UBERON:0002397 ! maxilla +relationship: connects UBERON:0018242 ! palatine bone horizontal plate +relationship: part_of UBERON:0003216 ! hard palate + +[Term] +id: UBERON:0035127 +name: suture of hard palate +def: "Any of the sutures of the hard palate" [http://www.merriam-webster.com/medical/palatine%20suture] +synonym: "palatine suture" EXACT [http://www.merriam-webster.com/medical/palatine%20suture] +is_a: UBERON:0003685 ! cranial suture +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0003685 ! cranial suture +intersection_of: part_of UBERON:0003216 ! hard palate +relationship: part_of UBERON:0003216 ! hard palate + +[Term] +id: UBERON:0035128 +name: manus cartilage element +synonym: "hand cartilage condensation" EXACT [EMAPA:32631] +xref: EMAPA:32631 +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +intersection_of: UBERON:0015063 ! autopod endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +intersection_of: part_of UBERON:0002398 ! manus +relationship: develops_from UBERON:0009523 {source="EMAPA-modified"} ! mesenchyme of handplate +relationship: part_of UBERON:0002398 ! manus + +[Term] +id: UBERON:0035129 +name: pes cartilage element +synonym: "foot cartilage condensation" EXACT [EMAPA:32657] +xref: EMAPA:32657 +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +intersection_of: UBERON:0015063 ! autopod endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +intersection_of: part_of UBERON:0002387 ! pes +relationship: develops_from UBERON:0003328 {source="EMAPA-modified"} ! mesenchyme of footplate +relationship: part_of UBERON:0002387 ! pes + +[Term] +id: UBERON:0035130 +name: auditory ossicle endochondral element +synonym: "auditory skeletal element" EXACT [] +synonym: "ear ossicle element" RELATED [] +synonym: "ear ossicles element" RELATED PLURAL [] +synonym: "middle ear ossicle element" EXACT [MP:0005105] +synonym: "middle ear skeletal element" RELATED [] +synonym: "ossicle element" BROAD [EMAPA:17824, http://en.wikipedia.org/wiki/Auditory_ossicle] +synonym: "ossicle element of ear" RELATED [] +synonym: "ossicle element of inner ear" RELATED [] +synonym: "ossicular chain element" RELATED PLURAL [] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: contributes_to_morphology_of UBERON:0001756 ! middle ear +relationship: develops_from UBERON:0003099 {source="http://www.ncbi.nlm.nih.gov/pubmed/11237469", source="https://github.com/obophenotype/uberon/wiki/The-neural-crest"} ! cranial neural crest +relationship: part_of UBERON:0001756 {source="MA"} ! middle ear +relationship: part_of UBERON:0008895 {source="http://www.ncbi.nlm.nih.gov/pubmed/11523816"} ! splanchnocranium + +[Term] +id: UBERON:0035131 +name: auditory ossicle cartilage element +synonym: "ossicle cartilage condensation" EXACT [EMAPA:35979] +xref: EMAPA:35979 +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:0035130 ! auditory ossicle endochondral element +intersection_of: UBERON:0035130 ! auditory ossicle endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0035132 +name: auditory ossicle pre-cartilage element +synonym: "ossicle pre-cartilage condensation" EXACT [EMAPA:35982] +xref: EMAPA:35982 +is_a: UBERON:0035130 ! auditory ossicle endochondral element +intersection_of: UBERON:0035130 ! auditory ossicle endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0035133 +name: longitudinal arch of pes +def: "A curved region of the skeleton of the pes (foot) formed by the tarsal and metatarsal bones." [http://en.wikipedia.org/wiki/Arches_of_the_foot#Longitudinal_arches] +synonym: "longitudinal arch of foot" EXACT [FMA:75030] +xref: FMA:75030 +xref: http://en.wikipedia.org/wiki/Arches_of_the_foot +is_a: UBERON:0000075 ! subdivision of skeletal system +relationship: has_part UBERON:0009879 ! tarsal skeleton +relationship: has_part UBERON:0010545 ! metatarsus skeleton +relationship: part_of UBERON:0002387 ! pes +relationship: present_in_taxon NCBITaxon:9606 +relationship: present_in_taxon NCBITaxon:9780 {source="PMC2048995"} + +[Term] +id: UBERON:0035139 +name: anterior nasal spine of maxilla +def: "A pointed projection at the front extremity of the intermaxillary suture." [http://medical-dictionary.thefreedictionary.com/anterior+nasal+spine] +synonym: "anterior nasal spine" RELATED [] +synonym: "spina nasalis anterior corporis maxillae" EXACT LATIN [FMA:75770, FMA:TA] +xref: FMA:75770 +xref: http://en.wikipedia.org/wiki/Anterior_nasal_spine +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002397 ! maxilla + +[Term] +id: UBERON:0035142 +name: preputial space of male +xref: EMAPA:36342 +is_a: UBERON:0035144 ! preputial space +intersection_of: UBERON:0035144 ! preputial space +intersection_of: part_of UBERON:0000989 ! penis +relationship: part_of UBERON:0001332 {source="EMAPA"} ! prepuce of penis + +[Term] +id: UBERON:0035143 +name: preputial space of female +is_a: UBERON:0035144 ! preputial space +intersection_of: UBERON:0035144 ! preputial space +intersection_of: part_of UBERON:0002411 ! clitoris +relationship: part_of UBERON:0005299 ! prepuce of clitoris + +[Term] +id: UBERON:0035144 +name: preputial space +def: "space between the prepuce and glans penis or clitoris" [http://orcid.org/0000-0002-6601-2165] +synonym: "preputial cavity" EXACT [FMA:28606] +xref: FMA:28606 +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0011374 ! prepuce + +[Term] +id: UBERON:0035145 +name: nucleus sacci vasculosi +is_a: UBERON:0000125 ! neural nucleus + +[Term] +id: UBERON:0035146 +name: tractus sacci vasculosi +is_a: UBERON:0001018 ! axon tract +intersection_of: UBERON:0001018 ! axon tract +intersection_of: extends_fibers_into UBERON:0034943 ! saccus vasculosus +intersection_of: extends_fibers_into UBERON:0035145 ! nucleus sacci vasculosi +relationship: extends_fibers_into UBERON:0034943 ! saccus vasculosus +relationship: extends_fibers_into UBERON:0035145 ! nucleus sacci vasculosi + +[Term] +id: UBERON:0035147 +name: axochord +def: "A medial muscle found in the ventral midline of annelid embryos" [BGEE:AN, http://www.ncbi.nlm.nih.gov/pubmed/25214631, https://github.com/obophenotype/uberon/issues/574] +is_a: UBERON:0001630 ! muscle organ +is_a: UBERON:0004120 ! mesoderm-derived structure +property_value: dc-contributor https://github.com/ANiknejad +property_value: dc-contributor https://github.com/cmungall +relationship: develops_from UBERON:0035148 ! presumptive axochord +relationship: intersects_midsagittal_plane_of UBERON:0000922 ! embryo +relationship: part_of UBERON:0000922 ! embryo +relationship: transformation_of UBERON:0035148 ! presumptive axochord + +[Term] +id: UBERON:0035148 +name: presumptive axochord +def: "Contractile mesodermal midline cells in the ventral midline of annelid embryos that give rise to the axochord" [BGEE:AN, http://www.ncbi.nlm.nih.gov/pubmed/25214631, https://github.com/obophenotype/uberon/issues/574] +synonym: "axochord pre-muscle mass" EXACT [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0005865 ! pre-muscle condensation +intersection_of: UBERON:0005865 ! pre-muscle condensation +intersection_of: has_potential_to_develop_into UBERON:0035147 ! axochord +property_value: dc-contributor https://github.com/ANiknejad +property_value: dc-contributor https://github.com/cmungall +relationship: has_potential_to_develop_into UBERON:0035147 ! axochord +relationship: intersects_midsagittal_plane_of UBERON:0000922 ! embryo + +[Term] +id: UBERON:0035149 +name: gingival epithelial attachment +xref: http://www.snomedbrowser.com/Codes/Details/85036004 +is_a: UBERON:0007651 ! anatomical junction +relationship: located_in UBERON:0008805 ! gingival groove +relationship: part_of UBERON:0001949 ! gingival epithelium + +[Term] +id: UBERON:0035150 +name: superior cerebral vein +def: "The Superior Cerebral Veins, eight to twelve in number, drain the superior, lateral, and medial surfaces of the hemispheres, and are mainly lodged in the sulci between the gyri, but some run across the gyri. They open into the superior sagittal sinus; the anterior veins runs nearly at right angles to the sinus; the posterior and larger veins are directed obliquely forward and open into the sinus in a direction more or less opposed to the current of the blood contained within it." [http://en.wikipedia.org/wiki/Superior_cerebral_veins] +synonym: "superior cerebral vein" RELATED [http://en.wikipedia.org/wiki/Superior_cerebral_veins] +xref: FMA:50978 +xref: http://en.wikipedia.org/wiki/Superior_cerebral_veins +xref: http://www.snomedbrowser.com/Codes/Details/244393005 +is_a: UBERON:0016559 {source="FMA"} ! superficial cerebral vein + +[Term] +id: UBERON:0035151 +name: dorsal cerebral vein +xref: EMAPA:37142 {source="MA:th"} +xref: MA:0002103 +is_a: UBERON:0001663 ! cerebral vein + +[Term] +id: UBERON:0035152 +name: internal cerebral vein +def: "The internal cerebral veins (veins of Galen; deep cerebral veins) drain the deep parts of the hemisphere and are two in number; each is formed near the interventricular foramen by the union of the terminal and choroid veins. They run backward parallel with one another, between the layers of the tela chorioidea of the third ventricle, and beneath the splenium of the corpus callosum, where they unite to form a short trunk, the great cerebral vein; just before their union each receives the corresponding basal vein." [http://en.wikipedia.org/wiki/Internal_cerebral_veins] +synonym: "internal cerebral vein" RELATED [http://en.wikipedia.org/wiki/Internal_cerebral_veins] +xref: FMA:51003 +xref: http://en.wikipedia.org/wiki/Internal_cerebral_veins +xref: http://linkedlifedata.com/resource/umls/id/C0149579 +xref: http://www.snomedbrowser.com/Codes/Details/244397006 +xref: NCIT:C32838 +is_a: UBERON:0001663 {source="ncithesaurus"} ! cerebral vein + +[Term] +id: UBERON:0035153 +name: dorsolateral prefrontal cortex layer 1 +def: "Most superficial layer of the Dorsolateral Prefrontal Cortex (DLPFC)." [NLX:156731] +synonym: "dlPF1" RELATED ABBREVIATION [] +synonym: "dlPFC1" RELATED ABBREVIATION [] +synonym: "layer I of dorsolateral prefrontal cortex" EXACT [] +xref: NLX:156731 +is_a: UBERON:0005390 ! cortical layer I +intersection_of: UBERON:0005390 ! cortical layer I +intersection_of: part_of UBERON:0009834 ! dorsolateral prefrontal cortex +relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex + +[Term] +id: UBERON:0035154 +name: dorsolateral prefrontal cortex layer 2 +def: "Layer 2 of neocortex lying just deep to superficial layer 1 of dorsolateral prefrontal cortex." [NLX:156732] +synonym: "dlPF2" RELATED ABBREVIATION [] +synonym: "dlPFC2" RELATED ABBREVIATION [] +synonym: "layer II of dorsolateral prefrontal cortex" EXACT [PBA:12986] +xref: NLX:156732 +xref: PBA:12986 +is_a: UBERON:0005391 ! cortical layer II +intersection_of: UBERON:0005391 ! cortical layer II +intersection_of: part_of UBERON:0009834 ! dorsolateral prefrontal cortex +relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex + +[Term] +id: UBERON:0035155 +name: dorsolateral prefrontal cortex layer 3 +def: "Layer 3 of dorsolateral prefrontal cortex lying deep to the layer 2 and cytoarchitectonically defined by numerous small pyramidal neurons." [NLX:156733] +synonym: "dlPF3" RELATED ABBREVIATION [] +synonym: "dlPFC3" RELATED ABBREVIATION [] +synonym: "layer III of dorsolateral prefrontal cortex" EXACT [PBA:12987] +xref: NLX:156733 +xref: PBA:12987 +is_a: UBERON:0005392 ! cortical layer III +intersection_of: UBERON:0005392 ! cortical layer III +intersection_of: part_of UBERON:0009834 ! dorsolateral prefrontal cortex +relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex + +[Term] +id: UBERON:0035156 +name: dorsolateral prefrontal cortex layer 4 +def: "Layer 4 of dorsolateral prefrontal cortex lying deep to the external pyramidal layer and cytoarchitectonically defined by presence of small cells." [NLX:156734] +synonym: "dlPF4" RELATED ABBREVIATION [] +synonym: "dlPFC4" RELATED ABBREVIATION [] +synonym: "granular layer IV of dorsolateral prefrontal cortex" EXACT [PBA:12988] +xref: NLX:156734 +xref: PBA:12988 +is_a: UBERON:0005393 ! cortical layer IV +intersection_of: UBERON:0005393 ! cortical layer IV +intersection_of: part_of UBERON:0009834 ! dorsolateral prefrontal cortex +relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex + +[Term] +id: UBERON:0035157 +name: dorsolateral prefrontal cortex layer 5 +def: "Layer 5 of dorsolateral prefrontal cortex lying deep to the internal granule cell layer 4 and cytoarchitectonically divisible into layers 5a and 5b. Layer 5a is characterized by the predominance of large pyramidal cell bodies. Layer 5b is pale in comparison." [NLX:156735] +synonym: "dlPF5" RELATED ABBREVIATION [] +synonym: "dlPFC5" RELATED ABBREVIATION [] +synonym: "layer V of dorsolateral prefrontal cortex" EXACT [PBA:12989] +xref: NLX:156735 +xref: PBA:12989 +is_a: UBERON:0005394 ! cortical layer V +intersection_of: UBERON:0005394 ! cortical layer V +intersection_of: part_of UBERON:0009834 ! dorsolateral prefrontal cortex +relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex + +[Term] +id: UBERON:0035158 +name: dorsolateral prefrontal cortex layer 6 +def: "Innermost layer of dorsolateral prefrontal cortex lying deep to the internal pyramidal cell layer 5. It is cytoarchitectonically defined in the DLPFC by cells of varying sizes. DLPFC layer 6a is characterized by more neurons and layer 6b has comparatively more glia." [NLX:156736] +synonym: "dlPF6" RELATED ABBREVIATION [] +synonym: "dlPFC6" RELATED ABBREVIATION [] +synonym: "layer VI of dorsolateral prefrontal cortex" EXACT [PBA:12990] +xref: NLX:156736 +xref: PBA:12990 +is_a: UBERON:0005395 ! cortical layer VI +intersection_of: UBERON:0005395 ! cortical layer VI +intersection_of: part_of UBERON:0009834 ! dorsolateral prefrontal cortex +relationship: part_of UBERON:0009834 ! dorsolateral prefrontal cortex + +[Term] +id: UBERON:0035159 +name: entire surface of organism +def: "Anatomical surface, which is the external surface of the whole body. Examples: There is only one body surface." [FMA:61695] +synonym: "surface of body" EXACT [FMA:61695] +xref: FMA:61695 +xref: http://linkedlifedata.com/resource/umls/id/C0489451 +xref: http://www.snomedbrowser.com/Codes/Details/261060002 +xref: NCIT:C29667 +is_a: UBERON:0006984 ! anatomical surface +intersection_of: UBERON:0006984 ! anatomical surface +intersection_of: surrounds UBERON:0000468 ! multicellular organism +relationship: surrounds UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0035162 +name: infraclavicular lymph node +def: "A lymph node located in the area below the clavicle." [ncithesaurus:Infraclavicular_Lymph_Node] +synonym: "deltopectoral lymph node" EXACT [FMA:14193] +synonym: "deltopectoral node" EXACT [FMA:14193] +synonym: "infraclavicular node" EXACT [FMA:14193] +synonym: "nodus lymphaticus infraclavicularis axillae" EXACT [FMA:14193] +xref: FMA:14193 +xref: http://en.wikipedia.org/wiki/Deltopectoral_lymph_nodes +xref: http://linkedlifedata.com/resource/umls/id/C0229743 +xref: http://www.snomedbrowser.com/Codes/Details/9659009 +xref: NCIT:C63705 +is_a: UBERON:0015917 {source="FMA"} ! superficial lymph node + +[Term] +id: UBERON:0035165 +name: posterior surface of prostate +def: "The flattened aspect of the prostate with a slight furrow facing the rectum and anus." [ncithesaurus:Posterior_Surface_of_the_Prostate] +synonym: "facies posterior (prostatae)" EXACT [FMA:19592] +synonym: "facies posterior prostatae" EXACT LATIN [FMA:19592, FMA:TA] +synonym: "posterior surface of prostate gland" EXACT [FMA:19592] +xref: FMA:19592 +xref: http://linkedlifedata.com/resource/umls/id/C0227961 +xref: http://www.snomedbrowser.com/Codes/Details/279697005 +xref: NCIT:C13095 +is_a: UBERON:0035480 ! surface of prostate +intersection_of: UBERON:0036215 ! anatomical surface region +intersection_of: bounding_layer_of UBERON:0002367 ! prostate gland +intersection_of: in_posterior_side_of UBERON:0002367 ! prostate gland +disjoint_from: UBERON:0035523 {source="lexical"} ! anterior surface of prostate +relationship: in_posterior_side_of UBERON:0002367 ! prostate gland + +[Term] +id: UBERON:0035168 +name: infraclavicular region +def: "The region below the clavicle." [ncithesaurus:Infraclavicular_Region] +synonym: "infraclavicular part of chest" EXACT [FMA:61479] +synonym: "infraclavicular region" EXACT [FMA:61479] +xref: FMA:61479 +xref: http://linkedlifedata.com/resource/umls/id/C0230108 +xref: http://www.snomedbrowser.com/Codes/Details/181036008 +xref: NCIT:C25268 +is_a: UBERON:0000475 ! organism subdivision +relationship: part_of UBERON:0001443 ! chest + +[Term] +id: UBERON:0035171 +name: obturator lymph node +synonym: "obturator node" EXACT [FMA:16656] +xref: FMA:16656 +xref: http://linkedlifedata.com/resource/umls/id/C0229822 +xref: http://www.snomedbrowser.com/Codes/Details/245368003 +xref: NCIT:C88141 +is_a: UBERON:0015880 {source="FMA"} ! external iliac lymph node + +[Term] +id: UBERON:0035174 +name: right ear +def: "The organ of hearing located on the right side of the head." [ncithesaurus:Right_Ear] +xref: FMA:53641 +xref: http://linkedlifedata.com/resource/umls/id/C0229298 +xref: http://www.snomedbrowser.com/Codes/Details/368570004 +xref: NCIT:C81285 +is_a: UBERON:0001690 ! ear +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0001690 ! ear +intersection_of: in_right_side_of UBERON:0000033 ! head +relationship: in_right_side_of UBERON:0000033 ! head + +[Term] +id: UBERON:0035177 +name: abdominal part of esophagus +def: "Clinical esophageal segment composed of smooth muscle. It corresponds to the inferior part of the lower third topographic segment of the esophagus." [ncithesaurus:Abdominal_Esophagus] +synonym: "abdominal esophagus" EXACT [FMA:9397] +synonym: "abdominal part of oesophagus" EXACT [FMA:9397] +synonym: "pars abdominalis (oesophagus)" EXACT [FMA:9397] +synonym: "pars abdominalis oesophageae" EXACT LATIN [FMA:9397, FMA:TA] +synonym: "T11 part of esophagus" EXACT [FMA:9397] +synonym: "t11 segment of esophagus" RELATED [FMA:9397] +xref: FMA:9397 +xref: http://linkedlifedata.com/resource/umls/id/C0227190 +xref: http://www.snomedbrowser.com/Codes/Details/245407007 +xref: NCIT:C12252 +is_a: UBERON:0013522 ! subdivision of tube +relationship: part_of UBERON:0001043 {source="FMA"} ! esophagus + +[Term] +id: UBERON:0035180 +name: sigmoid artery +def: "The sigmoid arteries, two or three in number, run obliquely downward and to the left behind the peritoneum and in front of the Psoas major, ureter, and internal spermatic vessels. Their branches supply the lower part of the descending colon, the iliac colon, and the sigmoid or pelvic colon; anastomosing above with the left colic, and below with the superior hemorrhoidal artery." [http://en.wikipedia.org/wiki/Sigmoid_arteries] +synonym: "inferior left colic artery" EXACT [FMA:14830] +xref: FMA:14830 +xref: http://linkedlifedata.com/resource/umls/id/C0226330 +xref: http://www.snomedbrowser.com/Codes/Details/265956005 +xref: NCIT:C33549 +xref: Sigmoid:arteries +is_a: UBERON:0004573 ! systemic artery +relationship: branching_part_of UBERON:0001183 {source="FMA"} ! inferior mesenteric artery +relationship: part_of UBERON:0001183 ! inferior mesenteric artery + +[Term] +id: UBERON:0035183 +name: calcarine artery +def: "An artery that branches from the medial occipital artery that aligns with the calcarine sulcus." [ncithesaurus:Calcarine_Artery] +synonym: "calcarine branch of medial occipital artery" EXACT [FMA:50655] +synonym: "ramus calcarinus (arteria occipitalis medialis)" EXACT LATIN [FMA:50655, FMA:TA] +xref: FMA:50655 +xref: http://linkedlifedata.com/resource/umls/id/C0226253 +xref: http://www.snomedbrowser.com/Codes/Details/2703009 +xref: NCIT:C32251 +is_a: UBERON:0001637 ! artery + +[Term] +id: UBERON:0035186 +name: valve of foramen ovale +synonym: "foramen ovale valve" EXACT [FMA:75348] +xref: FMA:75348 +xref: http://linkedlifedata.com/resource/umls/id/C1519951 +xref: http://www.snomedbrowser.com/Codes/Details/188958004 +xref: NCIT:C34326 +is_a: UBERON:0013686 {source="FMA"} ! anatomical conduit space +relationship: part_of UBERON:0004754 ! foramen ovale of heart + +[Term] +id: UBERON:0035195 +name: plantar metatarsal artery +def: "The plantar metatarsal arteries (digital branches) are four in number, and run forward between the metatarsal bones and in contact with the Interossei. Each divides into a pair of plantar digital arteries which supply the adjacent sides of the toes. Near their points of division each sends upward an anterior perforating branch to join the corresponding dorsal metatarsal artery. The first plantar metatarsal artery (arteria princeps hallucis) springs from the junction between the lateral plantar and deep plantar arteries and sends a digital branch to the medial side of the first toe. The digital branch for the lateral side of the fifth toe arise from the lateral plantar artery near the base of the fifth metatarsal bone." [http://en.wikipedia.org/wiki/Plantar_metatarsal_arteries] +synonym: "plantar metatarsal branch of plantar arch" EXACT [FMA:43956] +xref: FMA:43956 +xref: http://en.wikipedia.org/wiki/Plantar_metatarsal_arteries +xref: http://linkedlifedata.com/resource/umls/id/C0226480 +xref: http://www.snomedbrowser.com/Codes/Details/244343006 +xref: NCIT:C52743 +is_a: UBERON:0003516 ! hindlimb blood vessel +is_a: UBERON:0004573 ! systemic artery +relationship: part_of UBERON:0001538 {source="FMA"} ! posterior tibial artery + +[Term] +id: UBERON:0035198 +name: superficial lymphatic vessel +def: "The tubules that carry lymph throughout the body that are just beneath the surface of the skin." [ncithesaurus:Superficial_Lymphatic_Vessel] +synonym: "superficial lymph vessel" EXACT [FMA:52011] +xref: FMA:52011 +xref: http://linkedlifedata.com/resource/umls/id/C1282745 +xref: http://www.snomedbrowser.com/Codes/Details/20315002 +xref: NCIT:C33663 +is_a: UBERON:0001473 ! lymphatic vessel +intersection_of: UBERON:0001473 ! lymphatic vessel +intersection_of: part_of UBERON:0035549 ! vasculature of integument +relationship: part_of UBERON:0035549 ! vasculature of integument + +[Term] +id: UBERON:0035201 +name: gastrocolic ligament +def: "A major portion of the greater omentum between the stomach and the transverse colon." [ncithesaurus:Gastrocolic_Ligament] +xref: FMA:16552 +xref: http://linkedlifedata.com/resource/umls/id/C0230229 +xref: http://www.snomedbrowser.com/Codes/Details/260539007 +xref: NCIT:C32667 +is_a: UBERON:0034696 ! fold of peritoneum +intersection_of: UBERON:0034696 ! fold of peritoneum +intersection_of: connects UBERON:0000945 ! stomach +intersection_of: connects UBERON:0001157 ! transverse colon +relationship: connects UBERON:0000945 ! stomach +relationship: connects UBERON:0001157 ! transverse colon +relationship: part_of UBERON:0005448 {source="FMA"} ! greater omentum + +[Term] +id: UBERON:0035204 +name: occipital lymph node +def: "A lymph node located in the back of the head adjacent to the trapezius muscle." [ncithesaurus:Occipital_Lymph_Node] +synonym: "occipital node" EXACT [FMA:61214] +xref: FMA:61214 +xref: http://en.wikipedia.org/wiki/Occipital_lymph_nodes +xref: http://linkedlifedata.com/resource/umls/id/C0229711 +xref: http://www.snomedbrowser.com/Codes/Details/245326003 +xref: NCIT:C98188 +is_a: UBERON:0015870 ! lymph node of head +is_a: UBERON:0015917 {source="FMA"} ! superficial lymph node + +[Term] +id: UBERON:0035207 +name: deep fibular nerve +def: "A branch of the common peroneal nerve. It innervates the ankle and toes." [ncithesaurus:Deep_Peroneal_Nerve] +synonym: "deep peroneal nerve" EXACT [FMA:44771] +xref: FMA:44771 +xref: http://en.wikipedia.org/wiki/Deep_fibular_nerve +xref: http://linkedlifedata.com/resource/umls/id/C0228949 +xref: http://www.snomedbrowser.com/Codes/Details/181081007 +xref: NCIT:C92602 +is_a: UBERON:0003431 ! leg nerve +is_a: UBERON:0035652 ! fibular nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: branching_part_of UBERON:0001324 ! common fibular nerve +intersection_of: innervates UBERON:0001385 ! tibialis anterior +intersection_of: innervates UBERON:0010524 ! fibularis tertius +relationship: branching_part_of UBERON:0001324 ! common fibular nerve +relationship: innervates UBERON:0001385 ! tibialis anterior +relationship: innervates UBERON:0010524 ! fibularis tertius +relationship: part_of UBERON:0001324 ! common fibular nerve + +[Term] +id: UBERON:0035210 +name: paracolic gutter +def: "The paracolic gutters (paracolic sulci, paracolic recesses) are spaces between the colon and the abdominal wall. There are two paracolic gutters: The right lateral paracolic gutter. The left lateral paracolic gutter. These gutters are clinically important because they allow a passage for infectious fluids from different compartments of the abdomen. For example; fluid from an infected appendix can track up the right paracolic gutter to the hepatorenal recess." [http://en.wikipedia.org/wiki/Paracolic_gutters] +synonym: "paracolic sulcus" EXACT [FMA:14719] +xref: FMA:14719 +xref: http://linkedlifedata.com/resource/umls/id/C0230267 +xref: http://www.snomedbrowser.com/Codes/Details/243980001 +xref: NCIT:C89787 +xref: Paracolic:gutters +is_a: UBERON:0000093 ! sulcus + +[Term] +id: UBERON:0035213 +name: basal zone of heart +def: "The superior portion of the heart located opposite to the apical portion. It is formed mainly by the left atrium." [ncithesaurus:Base_of_the_Heart] +synonym: "anatomical base of heart" EXACT [FMA:223286] +synonym: "base of heart" EXACT [FMA:223286] +synonym: "basis cordis" EXACT LATIN [FMA:223286, FMA:TA] +xref: FMA:223286 +xref: http://en.wikipedia.org/wiki/Base_of_the_heart +xref: http://linkedlifedata.com/resource/umls/id/C0225810 +xref: http://www.snomedbrowser.com/Codes/Details/277701000 +xref: NCIT:C48589 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0034944 ! zone of organ +relationship: part_of UBERON:0000948 ! heart + +[Term] +id: UBERON:0035216 +name: thoracic part of esophagus +def: "Zone of esophagus located in the thorax." [FMA:9396] +synonym: "pars thoracica (oesophagus)" EXACT LATIN [FMA:9396, FMA:TA] +synonym: "pars thoracica oesophageae" EXACT LATIN [FMA:9396, FMA:TA] +synonym: "thoracic esophagus" EXACT [FMA:9396] +synonym: "thoracic part of oesophagus" EXACT [FMA:9396] +xref: FMA:9396 +xref: http://linkedlifedata.com/resource/umls/id/C0227188 +xref: http://www.snomedbrowser.com/Codes/Details/245406003 +xref: NCIT:C12251 +is_a: UBERON:0013522 ! subdivision of tube +relationship: part_of UBERON:0001043 {source="FMA"} ! esophagus + +[Term] +id: UBERON:0035219 +name: parasternal lymph node +def: "Any of the lymph nodes of the breast located under the ribcage, near the sternum." [ncithesaurus:Internal_Mammary_Lymph_Node] +synonym: "internal mammary lymph node" EXACT [FMA:5849] +synonym: "nodus parasternale" EXACT [FMA:5849] +synonym: "parasternal node" EXACT [FMA:5849] +xref: FMA:5849 +xref: http://en.wikipedia.org/wiki/Parasternal_lymph_nodes +xref: http://linkedlifedata.com/resource/umls/id/C0229755 +xref: http://www.snomedbrowser.com/Codes/Details/421997006 +xref: NCIT:C32853 +is_a: UBERON:0007644 {source="FMA"} ! thoracic lymph node + +[Term] +id: UBERON:0035222 +name: posterior parietal artery +xref: FMA:50488 +xref: http://linkedlifedata.com/resource/umls/id/C0226227 +xref: http://www.snomedbrowser.com/Codes/Details/44894007 +xref: NCIT:C33372 +is_a: UBERON:0035350 ! branch of middle cerebral artery +disjoint_from: UBERON:0035462 {source="lexical"} ! anterior parietal artery + +[Term] +id: UBERON:0035225 +name: anterior temporal artery +def: "A branch of the middle cerebral artery that supplies blood to the anterior part of the temporal lobe." [ncithesaurus:Anterior_Temporal_Artery] +xref: FMA:50382 +xref: http://linkedlifedata.com/resource/umls/id/C0226228 +xref: http://www.snomedbrowser.com/Codes/Details/44310009 +xref: NCIT:C32113 +is_a: UBERON:0001632 {source="FMA"} ! temporal artery +is_a: UBERON:0035350 ! branch of middle cerebral artery +disjoint_from: UBERON:0035261 {source="lexical"} ! posterior temporal artery + +[Term] +id: UBERON:0035228 +name: tonsillar fossa +def: "Between the plica triangularis and the surface of the palatine tonsils is a space known as the tonsillar fossa (or tonsillar sinus); in many cases, however, this sinus is obliterated by its walls becoming adherent." [http://en.wikipedia.org/wiki/Tonsillar_fossa] +synonym: "tonsillar bed" EXACT [FMA:55041] +synonym: "tonsillar sinus" EXACT [FMA:55041] +xref: FMA:55041 +xref: http://linkedlifedata.com/resource/umls/id/C0229881 +xref: http://www.snomedbrowser.com/Codes/Details/362596009 +xref: NCIT:C12235 +xref: Tonsillar:fossa +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0002372 ! tonsil + +[Term] +id: UBERON:0035231 +name: superficial middle cerebral vein +def: "A vein that runs along the fissure of Sylvius to the cavernous sinus on the lateral surface of the brain and connects to the superior sagittal and transverse sinuses." [ncithesaurus:Superficial_Middle_Cerebral_Vein] +synonym: "Sylvian vein" EXACT [FMA:50983] +synonym: "vein of Labbe" EXACT [FMA:50983] +xref: FMA:50983 +xref: http://en.wikipedia.org/wiki/Superficial_middle_cerebral_vein +xref: http://linkedlifedata.com/resource/umls/id/C0039027 +xref: http://www.snomedbrowser.com/Codes/Details/308729005 +xref: NCIT:C33664 +is_a: UBERON:0001663 {source="ncithesaurus"} ! cerebral vein +relationship: part_of UBERON:0003712 ! cavernous sinus +relationship: tributary_of UBERON:0003712 ! cavernous sinus + +[Term] +id: UBERON:0035234 +name: medial circumflex femoral vein +def: "A circumflex femoral vein that accompanies the medial circumflex femoral artery." [ncithesaurus:Medial_Femoral_Vein] +xref: FMA:44325 +xref: http://linkedlifedata.com/resource/umls/id/C1708952 +xref: http://www.snomedbrowser.com/Codes/Details/35235007 +xref: NCIT:C52688 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003516 ! hindlimb blood vessel +relationship: part_of UBERON:0001361 ! femoral vein +relationship: tributary_of UBERON:0001361 ! femoral vein + +[Term] +id: UBERON:0035237 +name: branch of internal carotid artery +synonym: "internal carotid arterial subdivision" EXACT [FMA:70506] +synonym: "subdivision of internal carotid artery" EXACT [FMA:70506] +xref: FMA:70506 +xref: http://linkedlifedata.com/resource/umls/id/C1182571 +xref: http://www.snomedbrowser.com/Codes/Details/360629008 +xref: NCIT:C32837 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0005396 ! carotid artery segment +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0005396 ! carotid artery segment +intersection_of: branching_part_of UBERON:0001532 ! internal carotid artery +relationship: branching_part_of UBERON:0001532 ! internal carotid artery +relationship: part_of UBERON:0001532 ! internal carotid artery + +[Term] +id: UBERON:0035240 +name: posterior wall of oropharynx +xref: FMA:55032 +xref: http://linkedlifedata.com/resource/umls/id/C0227155 +xref: http://www.snomedbrowser.com/Codes/Details/276960004 +xref: NCIT:C12240 +is_a: UBERON:0000328 ! gut wall +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: in_posterior_side_of UBERON:0001729 ! oropharynx +intersection_of: part_of UBERON:0001729 ! oropharynx +relationship: in_posterior_side_of UBERON:0001729 ! oropharynx +relationship: part_of UBERON:0001729 ! oropharynx + +[Term] +id: UBERON:0035243 +name: anal sinus +def: "Furrows, with pouchlike recesses at the lower end, separating the rectal columns." [ncithesaurus:Anal_Sinus] +synonym: "anal crypt" EXACT [FMA:15717] +xref: Anal:sinuses +xref: FMA:15717 +xref: http://linkedlifedata.com/resource/umls/id/C0227427 +xref: http://www.snomedbrowser.com/Codes/Details/245447000 +xref: NCIT:C32070 +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0000159 ! anal canal + +[Term] +id: UBERON:0035246 +name: posterior longitudinal ligament +xref: FMA:31894 +xref: http://linkedlifedata.com/resource/umls/id/C0206330 +xref: http://www.snomedbrowser.com/Codes/Details/244603005 +xref: NCIT:C33365 +is_a: UBERON:0011136 {source="FMA"} ! ligament of vertebral column +disjoint_from: UBERON:0035419 {source="lexical"} ! anterior longitudinal ligament + +[Term] +id: UBERON:0035249 +name: posterior external jugular vein +def: "A vein that drains the superficial muscles and integument of the upper back portion of the neck into the external jugular vein." [ncithesaurus:Posterior_External_Jugular_Vein] +xref: FMA:14318 +xref: http://en.wikipedia.org/wiki/Posterior_external_jugular_vein +xref: http://linkedlifedata.com/resource/umls/id/C0226546 +xref: http://www.snomedbrowser.com/Codes/Details/59579009 +xref: NCIT:C33360 +is_a: UBERON:0003502 ! neck blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +relationship: part_of UBERON:0001101 ! external jugular vein +relationship: tributary_of UBERON:0001101 ! external jugular vein + +[Term] +id: UBERON:0035252 +name: left subcostal vein +def: "A vein that extends along the bottom of the twelfth rib on the left side of the body." [ncithesaurus:Left_Subcostal_Vein] +synonym: "vena subcostalis sinistra" EXACT [FMA:4951] +xref: FMA:4951 +xref: http://linkedlifedata.com/resource/umls/id/C0501289 +xref: http://www.snomedbrowser.com/Codes/Details/361639006 +xref: NCIT:C53125 +is_a: UBERON:0001099 ! subcostal vein +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0001099 ! subcostal vein +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0035258 +name: mons pubis +def: "A structure composed of adipose tissue lying above the pubic bone of adult women, anterior to the symphysis pubis. The mons pubis forms the anterior portion of the vulva, and limits the perineal region proximally and anteriorly." [http://en.wikipedia.org/wiki/Mons_pubis] +synonym: "mons" BROAD [http://en.wikipedia.org/wiki/Mons_pubis] +synonym: "mons veneris" EXACT LATIN [http://en.wikipedia.org/wiki/Mons_pubis] +synonym: "public mound" EXACT [http://en.wikipedia.org/wiki/Mons_pubis] +xref: FMA:20218 +xref: http://linkedlifedata.com/resource/umls/id/C0230190 +xref: http://www.snomedbrowser.com/Codes/Details/362695004 +xref: Mons:pubis +xref: NCIT:C33139 +is_a: UBERON:0000475 ! organism subdivision +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0000997 {source="FMA"} ! mammalian vulva + +[Term] +id: UBERON:0035261 +name: posterior temporal artery +xref: FMA:50458 +xref: http://linkedlifedata.com/resource/umls/id/C0226229 +xref: http://www.snomedbrowser.com/Codes/Details/23830002 +xref: NCIT:C33384 +is_a: UBERON:0001632 {source="FMA"} ! temporal artery +is_a: UBERON:0035350 ! branch of middle cerebral artery + +[Term] +id: UBERON:0035267 +name: neck of gallbladder +def: "The narrowest portion of the gallbladder and distal to the cystic duct." [ncithesaurus:Gallbladder_Neck] +synonym: "cervix of gallbladder" EXACT [FMA:14538] +synonym: "gallbladder neck" EXACT [FMA:14538] +xref: FMA:14538 +xref: http://en.wikipedia.org/wiki/Neck_of_gallbladder +xref: http://linkedlifedata.com/resource/umls/id/C0227546 +xref: http://www.snomedbrowser.com/Codes/Details/245394007 +xref: NCIT:C32649 +is_a: UBERON:0001560 ! neck of organ +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0001560 ! neck of organ +intersection_of: part_of UBERON:0002110 ! gall bladder +relationship: part_of UBERON:0002110 ! gall bladder + +[Term] +id: UBERON:0035270 +name: roof of nasopharynx +synonym: "nasopharynx roof" EXACT [FMA:54906] +synonym: "pharyngeal fornix" EXACT [FMA:54906] +synonym: "roof of nasal part of pharynx" EXACT [FMA:54906] +synonym: "superior nasopharynx" EXACT [FMA:54906] +synonym: "superior wall of nasopharynx" EXACT [FMA:54906] +synonym: "vault of pharynx" EXACT [FMA:54906] +xref: FMA:54906 +xref: http://linkedlifedata.com/resource/umls/id/C0225492 +xref: http://www.snomedbrowser.com/Codes/Details/179268001 +xref: NCIT:C12242 +is_a: UBERON:0000328 ! gut wall +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: part_of UBERON:0001728 ! nasopharynx + +[Term] +id: UBERON:0035273 +name: superior thoracic artery +def: "The superior thoracic artery (highest thoracic artery) is a small vessel normally arising from the first division of the axillary artery, but may arise from the thoracoacromial artery, itself a branch of the second division of the axillary artery. Running forward and medialward along the upper border of the pectoralis minor, the superior thoracic artery passes between it and the pectoralis major to the side of the chest. It supplies branches to the first and second intercostal spaces as well as to the superior portion of serratus anterior. It anastomoses with the internal mammary and intercostal arteries." [http://en.wikipedia.org/wiki/Superior_thoracic_artery] +xref: FMA:22668 +xref: http://en.wikipedia.org/wiki/Superior_thoracic_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226419 +xref: http://www.snomedbrowser.com/Codes/Details/198713000 +xref: NCIT:C33701 +is_a: UBERON:0004573 ! systemic artery +relationship: branching_part_of UBERON:0001394 {source="FMA"} ! axillary artery +relationship: branching_part_of UBERON:0001533 {source="FMA"} ! subclavian artery +relationship: part_of UBERON:0001394 ! axillary artery +relationship: part_of UBERON:0001533 ! subclavian artery + +[Term] +id: UBERON:0035276 +name: epigastrium +def: "The upper central region of the abdomen between the costal margins and the subcostal plane." [ncithesaurus:Epigastric_Region] +synonym: "epigastric fossa" EXACT [FMA:20389] +synonym: "epigastric part of abdomen" EXACT [FMA:20389] +synonym: "epigastric region" EXACT [FMA:20389] +xref: FMA:20389 +xref: http://en.wikipedia.org/wiki/Epigastrium +xref: http://linkedlifedata.com/resource/umls/id/C0230185 +xref: http://www.snomedbrowser.com/Codes/Details/362693006 +xref: NCIT:C32525 +is_a: UBERON:0034944 ! zone of organ +relationship: part_of UBERON:0000916 ! abdomen + +[Term] +id: UBERON:0035279 +name: supraclavicular lymph node +def: "A lymph node which is located above the clavicle." [ncithesaurus:Supraclavicular_Lymph_Node] +synonym: "nodus lymphaticus supraclavicularis axillae" EXACT LATIN [FMA:14192, FMA:TA] +synonym: "supraclavicular node" EXACT [FMA:14192] +xref: FMA:14192 +xref: http://en.wikipedia.org/wiki/Supraclavicular_lymph_nodes +xref: http://linkedlifedata.com/resource/umls/id/C0229730 +xref: http://www.snomedbrowser.com/Codes/Details/245325004 +xref: NCIT:C12903 +is_a: UBERON:0002429 {source="FMA"} ! cervical lymph node + +[Term] +id: UBERON:0035286 +name: lateral wall of oropharynx +xref: FMA:55008 +xref: http://linkedlifedata.com/resource/umls/id/C0227156 +xref: http://www.snomedbrowser.com/Codes/Details/362125007 +xref: NCIT:C12239 +is_a: UBERON:0000328 ! gut wall +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: in_lateral_side_of UBERON:0001729 ! oropharynx +intersection_of: part_of UBERON:0001729 ! oropharynx +relationship: in_lateral_side_of UBERON:0001729 ! oropharynx +relationship: part_of UBERON:0001729 ! oropharynx + +[Term] +id: UBERON:0035289 +name: axillary tail of breast +def: "An extension of the tissue of the breast which extends into the axilla." [http://en.wikipedia.org/wiki/Tail_of_Spence] +synonym: "axillary process" EXACT [FMA:58072] +synonym: "axillary tail" EXACT [FMA:58072] +synonym: "axillary tail of Spence" EXACT [FMA:58072] +synonym: "processus axillaris (glandula mammaria)" EXACT [FMA:58072] +synonym: "tail of Spence" EXACT [FMA:58072] +xref: FMA:58072 +xref: http://en.wikipedia.org/wiki/Tail_of_Spence +xref: http://linkedlifedata.com/resource/umls/id/C0222611 +xref: http://www.snomedbrowser.com/Codes/Details/181137001 +xref: NCIT:C12305 +is_a: UBERON:0000475 ! organism subdivision +relationship: part_of UBERON:0000310 {source="ncithesaurus"} ! breast + +[Term] +id: UBERON:0035292 +name: branch of posterior tibial artery +synonym: "posterior tibial arterial branch" EXACT [FMA:69784] +xref: FMA:69784 +xref: http://linkedlifedata.com/resource/umls/id/C1181956 +xref: http://www.snomedbrowser.com/Codes/Details/314363005 +xref: NCIT:C33385 +is_a: UBERON:0003516 ! hindlimb blood vessel +is_a: UBERON:0004573 ! systemic artery +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0001538 ! posterior tibial artery +relationship: branching_part_of UBERON:0001538 ! posterior tibial artery +relationship: part_of UBERON:0001538 ! posterior tibial artery + +[Term] +id: UBERON:0035295 +name: left ear +def: "The organ of hearing located on the left side of the head[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Left_Ear] +xref: FMA:53642 +xref: http://linkedlifedata.com/resource/umls/id/C0229299 +xref: http://www.snomedbrowser.com/Codes/Details/368592000 +xref: NCIT:C81259 +is_a: UBERON:0001690 ! ear +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0001690 ! ear +intersection_of: in_left_side_of UBERON:0000033 ! head +relationship: in_left_side_of UBERON:0000033 ! head + +[Term] +id: UBERON:0035298 +name: tuberculum sellae +def: "An elevated zone of the sella turcica behind the chiasmatic groove[WP,modified]." [http://en.wikipedia.org/wiki/Tuberculum_sellae] +xref: FMA:54719 +xref: http://linkedlifedata.com/resource/umls/id/C0230049 +xref: http://www.snomedbrowser.com/Codes/Details/139784008 +xref: NCIT:C45911 +xref: Tuberculum:sellae +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0034944 ! zone of organ +relationship: part_of UBERON:0003689 {source="FMA"} ! sella turcica + +[Term] +id: UBERON:0035304 +name: branch of ulnar artery +synonym: "ulnar arterial branch" EXACT [FMA:22799] +xref: FMA:22799 +xref: http://linkedlifedata.com/resource/umls/id/C0816071 +xref: http://www.snomedbrowser.com/Codes/Details/360551008 +xref: NCIT:C33826 +is_a: UBERON:0001637 ! artery +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0001406 ! ulnar artery +relationship: branching_part_of UBERON:0001406 ! ulnar artery +relationship: part_of UBERON:0001406 ! ulnar artery + +[Term] +id: UBERON:0035307 +name: branch of vertebral artery +synonym: "vertebral arterial branch" EXACT [FMA:76259] +xref: FMA:76259 +xref: http://linkedlifedata.com/resource/umls/id/C1185372 +xref: http://www.snomedbrowser.com/Codes/Details/360535000 +xref: NCIT:C33867 +is_a: UBERON:0004573 ! systemic artery +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0001535 ! vertebral artery +relationship: branching_part_of UBERON:0001535 ! vertebral artery +relationship: part_of UBERON:0001535 ! vertebral artery + +[Term] +id: UBERON:0035310 +name: inferolateral surface of prostate +def: "The aspect of the prostate facing the pelvic diaphragm and pubis." [ncithesaurus:Inferolateral_Surface_of_the_Prostate] +synonym: "facies inferolaterales (prostatae)" EXACT [FMA:19596] +synonym: "facies inferolateralis prostatae" EXACT LATIN [FMA:19596, FMA:TA] +synonym: "inferolateral surface of prostate gland" EXACT [FMA:19596] +xref: FMA:19596 +xref: http://linkedlifedata.com/resource/umls/id/C0227962 +xref: http://www.snomedbrowser.com/Codes/Details/279698000 +xref: NCIT:C13090 +is_a: UBERON:0036215 ! anatomical surface region +relationship: part_of UBERON:0002367 ! prostate gland + +[Term] +id: UBERON:0035313 +name: posterior wall of laryngopharynx +synonym: "posterior wall of hypopharynx" EXACT [FMA:55063] +xref: FMA:55063 +xref: http://linkedlifedata.com/resource/umls/id/C0227174 +xref: http://www.snomedbrowser.com/Codes/Details/276966005 +xref: NCIT:C12249 +is_a: UBERON:0000328 ! gut wall +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: in_posterior_side_of UBERON:0001051 ! hypopharynx +intersection_of: part_of UBERON:0001051 ! hypopharynx +relationship: in_posterior_side_of UBERON:0001051 ! hypopharynx +relationship: part_of UBERON:0001051 ! hypopharynx + +[Term] +id: UBERON:0035316 +name: prostatic capsule +def: "The membrane the surrounds the prostate gland." [ncithesaurus:Capsule_of_the_Prostate] +synonym: "capsule of prostate" EXACT [FMA:19583] +synonym: "capsule of prostate gland" EXACT [FMA:19583] +xref: FMA:19583 +xref: http://linkedlifedata.com/resource/umls/id/C0227963 +xref: http://www.snomedbrowser.com/Codes/Details/279682007 +xref: NCIT:C13086 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0003893 ! capsule +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0003893 ! capsule +intersection_of: part_of UBERON:0002367 ! prostate gland +relationship: part_of UBERON:0002367 ! prostate gland + +[Term] +id: UBERON:0035319 +name: anterior median fissure of spinal cord +def: "A fissure in the midline of the anterior surface of the spinal cord." [ncithesaurus:Anterior_Median_Fissure_of_Spinal_Cord] +synonym: "fissura mediana anterior medullae spinalis" EXACT LATIN [FMA:83735, FMA:TA] +synonym: "ventral median fissure of spinal cord" EXACT [FMA:83735] +xref: FMA:83735 +xref: http://en.wikipedia.org/wiki/Anterior_median_fissure_of_spinal_cord +xref: http://linkedlifedata.com/resource/umls/id/C1744548 +xref: http://www.snomedbrowser.com/Codes/Details/314225000 +xref: NCIT:C32096 +is_a: UBERON:0014466 {source="FMA"} ! subarachnoid fissure + +[Term] +id: UBERON:0035322 +name: right common iliac artery +synonym: "trunk of right common iliac arterial tree" EXACT [FMA:14765] +xref: FMA:14765 +xref: http://linkedlifedata.com/resource/umls/id/C0226362 +xref: http://www.snomedbrowser.com/Codes/Details/283392005 +xref: NCIT:C33474 +is_a: UBERON:0001191 ! common iliac artery +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0001191 ! common iliac artery +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: in_right_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0035328 +name: upper outer quadrant of breast +def: "The quarter of the breast which is superior and lateral." [ncithesaurus:Upper-outer_Quadrant_of_the_Breast] +synonym: "upper outer quadrant of female breast" EXACT [FMA:61380] +xref: FMA:61380 +xref: http://linkedlifedata.com/resource/umls/id/C0222598 +xref: http://www.snomedbrowser.com/Codes/Details/181134008 +xref: NCIT:C12303 +is_a: UBERON:0035635 ! upper quadrant of breast +is_a: UBERON:0035638 ! outer quadrant of breast +intersection_of: UBERON:0035634 ! quadrant of breast +intersection_of: in_anterior_side_of UBERON:0000310 ! breast +intersection_of: in_outermost_side_of UBERON:0000310 ! breast + +[Term] +id: UBERON:0035331 +name: base of prostate +def: "The uppermost part of the prostate gland adjacent to the bladder wall." [ncithesaurus:Base_of_the_Prostate] +synonym: "base of prostate gland" EXACT [FMA:19595] +synonym: "prostatic base" EXACT [FMA:19595] +xref: FMA:19595 +xref: http://linkedlifedata.com/resource/umls/id/C0227958 +xref: http://www.snomedbrowser.com/Codes/Details/279702001 +xref: NCIT:C13088 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0034944 ! zone of organ +relationship: part_of UBERON:0002367 ! prostate gland + +[Term] +id: UBERON:0035338 +name: sphenoparietal sinus +def: "The cavernous sinus receives the superior ophthalmic vein through the superior orbital fissure, some of the cerebral veins, and also the small sphenoparietal sinus, which courses along the under surface of the small wing of the sphenoid." [http://en.wikipedia.org/wiki/Sphenoparietal_sinus] +xref: FMA:50776 +xref: http://linkedlifedata.com/resource/umls/id/C0226866 +xref: http://www.snomedbrowser.com/Codes/Details/279266001 +xref: NCIT:C33585 +xref: Sphenoparietal:sinus +is_a: UBERON:0017635 {source="FMA"} ! paired venous dural sinus + +[Term] +id: UBERON:0035341 +name: posterior lobe of prostate +def: "The prostate gland lobe that is located on the posterior side of the organ." [ncithesaurus:Posterior_Lobe_of_the_Prostate] +synonym: "posterior lobe of prostate gland" EXACT [FMA:19575] +synonym: "posterior peripheral zone" EXACT [FMA:19575] +xref: FMA:19575 +xref: http://linkedlifedata.com/resource/umls/id/C0227976 +xref: http://www.snomedbrowser.com/Codes/Details/66012001 +xref: NCIT:C13093 +is_a: UBERON:0001328 {source="FMA"} ! lobe of prostate + +[Term] +id: UBERON:0035344 +name: obsolete synapse +is_obsolete: true +replaced_by: GO:0045202 +consider: FMA:67408 +consider: NCIT:C13281 +consider: SCTID:362298009 +consider: UMLS:C0039062 + +[Term] +id: UBERON:0035350 +name: branch of middle cerebral artery +synonym: "middle cerebral arterial branch" EXACT [FMA:50081] +xref: FMA:50081 +xref: http://linkedlifedata.com/resource/umls/id/C0923405 +xref: http://www.snomedbrowser.com/Codes/Details/314302003 +xref: NCIT:C33114 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0001627 ! middle cerebral artery +relationship: branching_part_of UBERON:0001627 ! middle cerebral artery +relationship: part_of UBERON:0001627 ! middle cerebral artery + +[Term] +id: UBERON:0035359 +name: branch of brachial artery +synonym: "brachial arterial branch" EXACT [FMA:22693] +xref: FMA:22693 +xref: http://linkedlifedata.com/resource/umls/id/C0815997 +xref: http://www.snomedbrowser.com/Codes/Details/360543005 +xref: NCIT:C32227 +is_a: UBERON:0001637 ! artery +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0001398 ! brachial artery +relationship: branching_part_of UBERON:0001398 ! brachial artery +relationship: part_of UBERON:0001398 ! brachial artery + +[Term] +id: UBERON:0035365 +name: lower outer quadrant of breast +def: "The quarter of the breast which is inferior and lateral." [ncithesaurus:Lower-outer_Quadrant_of_the_Breast] +synonym: "lower outer quadrant of female breast" EXACT [FMA:61376] +xref: FMA:61376 +xref: http://linkedlifedata.com/resource/umls/id/C0222599 +xref: http://www.snomedbrowser.com/Codes/Details/181136005 +xref: NCIT:C12304 +is_a: UBERON:0035636 ! lower quadrant of breast +is_a: UBERON:0035638 ! outer quadrant of breast +intersection_of: UBERON:0035634 ! quadrant of breast +intersection_of: in_outermost_side_of UBERON:0000310 ! breast +intersection_of: in_posterior_side_of UBERON:0000310 ! breast + +[Term] +id: UBERON:0035368 +name: anterior surface of kidney +def: "The aspect of the kidney facing the abdominal cavity." [ncithesaurus:Anterior_Surface_of_the_Kidney] +synonym: "facies anterior (Ren)" EXACT [FMA:15589] +synonym: "facies anterior renis" EXACT LATIN [FMA:15589, FMA:TA] +xref: FMA:15589 +xref: http://linkedlifedata.com/resource/umls/id/C0227609 +xref: http://www.snomedbrowser.com/Codes/Details/279375001 +xref: NCIT:C32107 +is_a: UBERON:0036215 ! anatomical surface region +disjoint_from: UBERON:0035471 {source="lexical"} ! posterior surface of kidney +relationship: part_of UBERON:0002113 {source="ncithesaurus"} ! kidney + +[Term] +id: UBERON:0035371 +name: retroperitoneal lymph node +def: "A lymph node located in the retroperitoneal space." [ncithesaurus:Retroperitoneal_Lymph_Node] +synonym: "retroperitoneal node" EXACT [FMA:16694] +xref: FMA:16694 +xref: http://linkedlifedata.com/resource/umls/id/C0229802 +xref: http://www.snomedbrowser.com/Codes/Details/249613000 +xref: NCIT:C98189 +is_a: UBERON:0000029 ! lymph node +is_a: UBERON:0002075 ! viscus +intersection_of: UBERON:0000029 ! lymph node +intersection_of: located_in UBERON:0003693 ! retroperitoneal space +relationship: located_in UBERON:0003693 ! retroperitoneal space + +[Term] +id: UBERON:0035374 +name: small cardiac vein +def: "A vein running parallel to the right coronary artery in the coronary sulcus that drains into the right extremity of the coronary sinus." [ncithesaurus:Small_Cardiac_Vein] +synonym: "right cardiac vein" EXACT [FMA:4714] +xref: FMA:4714 +xref: http://en.wikipedia.org/wiki/Small_cardiac_vein +xref: http://linkedlifedata.com/resource/umls/id/C0226661 +xref: http://www.snomedbrowser.com/Codes/Details/277730007 +xref: NCIT:C12881 +is_a: UBERON:0004148 {source="ncithesaurus"} ! cardiac vein +is_a: UBERON:0004148 {source="FMA"} ! cardiac vein + +[Term] +id: UBERON:0035377 +name: transverse fold of rectum +def: "One of the semi-lunar transverse folds of the rectal wall that protrude into the anal canal." [http://en.wikipedia.org/wiki/Houston_valve] +synonym: "horizontal fold of rectum" EXACT [FMA:15722] +synonym: "transverse rectal fold" EXACT [FMA:15722] +xref: FMA:15722 +xref: Houston:valve +xref: http://linkedlifedata.com/resource/umls/id/C0227403 +xref: http://www.snomedbrowser.com/Codes/Details/259687002 +xref: NCIT:C33807 +is_a: UBERON:0034944 ! zone of organ +relationship: part_of UBERON:0001052 {source="ncithesaurus"} ! rectum + +[Term] +id: UBERON:0035380 +name: branch of anterior cerebral artery +def: "An arterial branch arising from the anterior cerebral artery. It includes the callosomarginal artery, frontopolar artery, medial orbitofrontal artery, pericallosal artery, and recurrent artery of Heubner." [ncithesaurus:Anterior_Cerebral_Artery_Branch] +synonym: "anterior cerebral arterial branch" EXACT [FMA:50031] +xref: FMA:50031 +xref: http://linkedlifedata.com/resource/umls/id/C0923371 +xref: http://www.snomedbrowser.com/Codes/Details/314304002 +xref: NCIT:C32082 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0001624 ! anterior cerebral artery +disjoint_from: UBERON:0035508 {source="lexical"} ! branch of posterior cerebral artery +relationship: branching_part_of UBERON:0001624 ! anterior cerebral artery +relationship: part_of UBERON:0001624 ! anterior cerebral artery + +[Term] +id: UBERON:0035383 +name: lateral wall of nasopharynx +synonym: "lateral nasopharynx" EXACT [FMA:54908] +xref: FMA:54908 +xref: http://linkedlifedata.com/resource/umls/id/C0225486 +xref: http://www.snomedbrowser.com/Codes/Details/361937006 +xref: NCIT:C12244 +is_a: UBERON:0000328 ! gut wall +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: in_lateral_side_of UBERON:0001728 ! nasopharynx +intersection_of: part_of UBERON:0001728 ! nasopharynx +relationship: in_lateral_side_of UBERON:0001728 ! nasopharynx +relationship: part_of UBERON:0001728 ! nasopharynx + +[Term] +id: UBERON:0035386 +name: space of Mall +synonym: "mall space" EXACT [FMA:70118] +xref: FMA:70118 +xref: http://linkedlifedata.com/resource/umls/id/C0227532 +xref: http://www.snomedbrowser.com/Codes/Details/89510009 +xref: NCIT:C33580 +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system + +[Term] +id: UBERON:0035392 +name: cystic vein +def: "A blood vessel carrying deoxygenated blood from the gallbladder and the cystic duct into the right branch of the portal vein." [ncithesaurus:Cystic_Vein] +synonym: "cholecystic vein" EXACT [FMA:15403] +xref: Cystic:vein +xref: FMA:15403 +xref: http://linkedlifedata.com/resource/umls/id/C0226741 +xref: http://www.snomedbrowser.com/Codes/Details/281059001 +xref: NCIT:C32422 +is_a: UBERON:0001638 ! vein +relationship: part_of UBERON:0001138 ! superior mesenteric vein +relationship: tributary_of UBERON:0001138 ! superior mesenteric vein + +[Term] +id: UBERON:0035395 +name: branch of left coronary artery +synonym: "left coronary arterial branch" EXACT [FMA:66328] +xref: FMA:66328 +xref: http://linkedlifedata.com/resource/umls/id/C0447055 +xref: http://www.snomedbrowser.com/Codes/Details/244248004 +xref: NCIT:C32958 +is_a: UBERON:0003498 ! heart blood vessel +is_a: UBERON:0004573 ! systemic artery +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0001626 ! left coronary artery +relationship: branching_part_of UBERON:0001626 ! left coronary artery +relationship: part_of UBERON:0001626 ! left coronary artery + +[Term] +id: UBERON:0035398 +name: branch of external carotid artery +synonym: "external carotid arterial subdivision" EXACT [FMA:70505] +synonym: "subdivision of external carotid artery" EXACT [FMA:70505] +xref: FMA:70505 +xref: http://linkedlifedata.com/resource/umls/id/C0447038 +xref: http://www.snomedbrowser.com/Codes/Details/244216003 +xref: NCIT:C32552 +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0001070 ! external carotid artery +relationship: branching_part_of UBERON:0001070 ! external carotid artery +relationship: part_of UBERON:0001070 ! external carotid artery + +[Term] +id: UBERON:0035401 +name: posterior wall of nasopharynx +synonym: "posterior nasopharynx" EXACT [FMA:54907] +xref: FMA:54907 +xref: http://linkedlifedata.com/resource/umls/id/C0225484 +xref: http://www.snomedbrowser.com/Codes/Details/361936002 +xref: NCIT:C12243 +is_a: UBERON:0000328 ! gut wall +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: in_posterior_side_of UBERON:0001728 ! nasopharynx +intersection_of: part_of UBERON:0001728 ! nasopharynx +relationship: in_posterior_side_of UBERON:0001728 ! nasopharynx +relationship: part_of UBERON:0001728 ! nasopharynx + +[Term] +id: UBERON:0035403 +name: hypophysial artery +def: "An artery that supplies the pituitary gland." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0001637 ! artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0000007 ! pituitary gland +relationship: supplies UBERON:0000007 ! pituitary gland + +[Term] +id: UBERON:0035404 +name: superior hypophysial artery +def: "The superior hypophysial artery is an artery supplying the pars tuberalis,the infundibulum of the pituitary gland and the median eminence. It is a branch of the posterior communicating artery which branches from the internal carotid artery in the circle of Willis.." [http://en.wikipedia.org/wiki/Superior_hypophysial_artery] +synonym: "superior hypophyseal artery" EXACT [FMA:49849] +xref: FMA:49849 +xref: http://en.wikipedia.org/wiki/Superior_hypophysial_artery +xref: http://linkedlifedata.com/resource/umls/id/C1261387 +xref: http://www.snomedbrowser.com/Codes/Details/303427008 +xref: NCIT:C33678 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0035403 ! hypophysial artery +relationship: branching_part_of UBERON:0001532 ! internal carotid artery +relationship: part_of UBERON:0001532 ! internal carotid artery + +[Term] +id: UBERON:0035410 +name: left inguinal part of abdomen +synonym: "left iliac fossa viewed surgically" EXACT [FMA:24037] +synonym: "left iliac region" EXACT [FMA:24037] +synonym: "left inguinal region" EXACT [FMA:24037] +xref: FMA:24037 +xref: http://linkedlifedata.com/resource/umls/id/C0230321 +xref: http://www.snomedbrowser.com/Codes/Details/362725002 +xref: NCIT:C32963 +is_a: UBERON:0008337 ! inguinal part of abdomen +is_a: UBERON:0015212 ! lateral structure +relationship: in_left_side_of UBERON:0000916 ! abdomen +relationship: part_of UBERON:0000916 ! abdomen + +[Term] +id: UBERON:0035416 +name: diaphragma sellae +def: "The diaphragma sellae or sellar diaphragm is the circular fold of dura mater that almost completely roofs the fossa hypophyseos in the sphenoid bone of the skull. It retains the pituitary gland in the fossa hypophyseos, with only the infundibulum of the pituitary gland passing through it." [http://en.wikipedia.org/wiki/Diaphragma_sellae] +synonym: "sellar diaphragm" EXACT [FMA:78540] +xref: Diaphragma:sellae +xref: FMA:78540 +xref: http://linkedlifedata.com/resource/umls/id/C0228123 +xref: http://www.snomedbrowser.com/Codes/Details/32967008 +xref: NCIT:C32459 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0034944 ! zone of organ +relationship: part_of UBERON:0010506 {source="ncithesaurus"} ! meningeal dura mater + +[Term] +id: UBERON:0035419 +name: anterior longitudinal ligament +def: "A ligament running the length of the anterior surface of the spinal column and thereby interconnects all the vertebral bodies." [ncithesaurus:Anterior_Longitudinal_Ligament] +xref: FMA:31893 +xref: http://linkedlifedata.com/resource/umls/id/C0206329 +xref: http://www.snomedbrowser.com/Codes/Details/244601007 +xref: NCIT:C32095 +is_a: UBERON:0011136 {source="FMA"} ! ligament of vertebral column + +[Term] +id: UBERON:0035422 +name: circumflex branch of left coronary artery +def: "Branch of left coronary artery which runs perpendicular to the anterior interventricular branch of the left coronary artery on the left side of the interventricular sulcus and supplies the left side of the heart." [FMA:3895] +synonym: "circumflex coronary artery" EXACT [FMA:3895] +synonym: "left circumflex branch of left coronary artery" EXACT [FMA:3895] +synonym: "ramus circumflexus (arteria coronaria sinistra)" EXACT LATIN [FMA:3895, FMA:TA] +xref: FMA:3895 +xref: http://en.wikipedia.org/wiki/Circumflex_branch_of_left_coronary_artery +xref: http://linkedlifedata.com/resource/umls/id/C0226037 +xref: http://www.snomedbrowser.com/Codes/Details/362036002 +xref: NCIT:C12874 +is_a: UBERON:0035395 ! branch of left coronary artery + +[Term] +id: UBERON:0035425 +name: falx cerebelli +def: "A small triangular process of dura matter beginning at the internal occipital crest just beneath the tentorium and projecting forward." [ncithesaurus:Falx_Cerebelli] +synonym: "cerebellar falx" EXACT [FMA:83974] +xref: Falx:cerebelli +xref: FMA:83974 +xref: http://linkedlifedata.com/resource/umls/id/C0228122 +xref: http://www.snomedbrowser.com/Codes/Details/280380009 +xref: NCIT:C32584 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0010506 {source="ncithesaurus"} ! meningeal dura mater + +[Term] +id: UBERON:0035428 +name: postcapillary venule +xref: FMA:63191 +xref: http://linkedlifedata.com/resource/umls/id/C0226505 +xref: http://www.snomedbrowser.com/Codes/Details/6216007 +xref: NCIT:C33345 +is_a: UBERON:0001979 {source="FMA"} ! venule + +[Term] +id: UBERON:0035431 +name: mediastinal pleura +def: "The parietal pleura that lines the mediastinum." [ncithesaurus:Mediastinal_Pleura] +synonym: "mediastinal part of parietal pleura" EXACT [FMA:9736] +synonym: "pars mediastinalis (pleurae)" EXACT [FMA:9736] +synonym: "pars mediastinalis pleurae parietalis" EXACT LATIN [FMA:9736, FMA:TA] +xref: FMA:9736 +xref: http://linkedlifedata.com/resource/umls/id/C0225789 +xref: http://www.snomedbrowser.com/Codes/Details/362002008 +xref: Mediastinal:pleura +xref: NCIT:C94820 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0034944 ! zone of organ +relationship: has_part UBERON:0003728 {source="FMA"} ! mediastinum +relationship: part_of UBERON:0002400 {source="FMA"} ! parietal pleura + +[Term] +id: UBERON:0035435 +name: right suprarenal vein +def: "A vein that drains blood from the right adrenal gland into the inferior vena cava." [ncithesaurus:Right_Suprarenal_Vein] +synonym: "vena suprarenalis (adrenalis) dextra" EXACT [FMA:14343] +xref: FMA:14343 +xref: http://linkedlifedata.com/resource/umls/id/C0226721 +xref: http://www.snomedbrowser.com/Codes/Details/69354005 +xref: NCIT:C53131 +is_a: UBERON:0001146 ! suprarenal vein +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0001146 ! suprarenal vein +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: in_right_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0035438 +name: mucoid tissue +def: "Loose connective tissue, the intercellular matrix of which consists predominantly of mucoid ground substance. Examples: Mucoid tissue of umbilical cord, mucoid tissue of vitreous body, mucoid tissue of nucleus pulposus." [FMA:20111] +synonym: "mucous connective tissue" EXACT [FMA:20111] +synonym: "mucous tissue" EXACT [FMA:20111] +xref: FMA:20111 +xref: http://linkedlifedata.com/resource/umls/id/C0230987 +xref: http://www.snomedbrowser.com/Codes/Details/61115003 +xref: NCIT:C34213 +is_a: UBERON:0011825 {source="FMA"} ! loose connective tissue + +[Term] +id: UBERON:0035441 +name: apex of prostate +def: "The lowest part of the prostate gland adjacent to the superior fascia of the urogenital diaphragm." [ncithesaurus:Apex_of_the_Prostate] +synonym: "apex of prostate gland" EXACT [FMA:19594] +synonym: "prostatic apex" EXACT [FMA:19594] +xref: FMA:19594 +xref: http://linkedlifedata.com/resource/umls/id/C0227959 +xref: http://www.snomedbrowser.com/Codes/Details/279703006 +xref: NCIT:C13087 +is_a: UBERON:0006983 ! anatomical point +relationship: part_of UBERON:0002367 {source="ncithesaurus"} ! prostate gland + +[Term] +id: UBERON:0035444 +name: triangular ligament of liver +synonym: "triangular ligament" BROAD [FMA:15821] +xref: FMA:15821 +xref: http://www.snomedbrowser.com/Codes/Details/279968005 +is_a: UBERON:0000211 ! ligament +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0005172 ! abdomen element +is_a: UBERON:0013765 ! digestive system element +relationship: part_of UBERON:0002107 ! liver + +[Term] +id: UBERON:0035445 +name: urogenital diaphragm +def: "muscular components of the deep perineal pouch." [http://en.wikipedia.org/wiki/Urogenital_diaphragm] +xref: FMA:19734 +xref: http://linkedlifedata.com/resource/umls/id/C0230241 +xref: NCIT:C33810 +xref: Urogenital:diaphragm +is_a: UBERON:0000211 {source="ncithesaurus"} ! ligament +is_a: UBERON:0005173 ! abdominal segment element +relationship: part_of UBERON:0002356 {source="ncithesaurus"} ! perineum + +[Term] +id: UBERON:0035450 +name: cervical part of esophagus +def: "Clinical esophageal segment composed of skeletal muscle. It corresponds to the superior part of the upper third topographic segment of the esophagus." [ncithesaurus:Cervical_Esophagus] +synonym: "cervical esophagus" EXACT [FMA:9395] +synonym: "cervical part of oesophagus" EXACT [FMA:9395] +synonym: "pars cervicalis (oesophagus)" EXACT [FMA:9395] +synonym: "pars cervicalis oesophageae" EXACT LATIN [FMA:9395, FMA:TA] +synonym: "pars colli oesophageae" EXACT LATIN [FMA:9395, FMA:TA] +xref: FMA:9395 +xref: http://linkedlifedata.com/resource/umls/id/C0227186 +xref: http://www.snomedbrowser.com/Codes/Details/245405004 +xref: NCIT:C12250 +is_a: UBERON:0013522 ! subdivision of tube +relationship: part_of UBERON:0001043 {source="FMA"} ! esophagus + +[Term] +id: UBERON:0035453 +name: laryngeal ventricle +synonym: "ventricle of larynx" EXACT [FMA:64171] +synonym: "ventricle of Morgagni" EXACT [FMA:64171] +xref: FMA:64171 +xref: http://linkedlifedata.com/resource/umls/id/C0225566 +xref: http://www.snomedbrowser.com/Codes/Details/361949007 +xref: NCIT:C32935 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0034944 ! zone of organ +relationship: part_of UBERON:0001737 {source="ncithesaurus"} ! larynx + +[Term] +id: UBERON:0035462 +name: anterior parietal artery +def: "The artery that delivers blood to the anterior portion of the parietal lobe." [ncithesaurus:Anterior_Parietal_Artery] +xref: FMA:50485 +xref: http://linkedlifedata.com/resource/umls/id/C0226226 +xref: http://www.snomedbrowser.com/Codes/Details/78499006 +xref: NCIT:C32101 +is_a: UBERON:0035350 ! branch of middle cerebral artery + +[Term] +id: UBERON:0035465 +name: endometrial cavity +def: "A space inside the uterus lined by a layer of mucus membranes called the endometrium." [ncithesaurus:Endometrial_Cavity] +synonym: "cavity of body of uterus" EXACT [FMA:18076] +synonym: "endometrial cavity" EXACT [FMA:18076] +synonym: "endometrial lumen" EXACT [] +synonym: "intrauterine cavity" EXACT [FMA:18076] +xref: FMA:18076 +xref: http://linkedlifedata.com/resource/umls/id/C0227844 +xref: http://www.snomedbrowser.com/Codes/Details/362257002 +xref: NCIT:C32514 +xref: Uterine:cavity +is_a: UBERON:0002553 ! anatomical cavity +intersection_of: UBERON:0002553 ! anatomical cavity +intersection_of: adjacent_to UBERON:0001295 ! endometrium +intersection_of: luminal_space_of UBERON:0009853 ! body of uterus +relationship: adjacent_to UBERON:0001295 ! endometrium +relationship: luminal_space_of UBERON:0009853 ! body of uterus +relationship: part_of UBERON:0009853 ! body of uterus +relationship: part_of UBERON:0013769 ! uterine lumen + +[Term] +id: UBERON:0035468 +name: costodiaphragmatic recess +def: "The angled junction where the diaphragm meets the chest wall." [ncithesaurus:Costophrenic_Angle] +synonym: "costophrenic angle" EXACT [FMA:11355] +xref: Costodiaphragmatic:recess +xref: FMA:11355 +xref: http://linkedlifedata.com/resource/umls/id/C0230151 +xref: http://www.snomedbrowser.com/Codes/Details/46297007 +xref: NCIT:C32393 +is_a: UBERON:0034944 ! zone of organ +relationship: part_of UBERON:0001103 {source="ncithesaurus"} ! diaphragm + +[Term] +id: UBERON:0035471 +name: posterior surface of kidney +synonym: "facies posterior (Ren)" EXACT [FMA:15590] +synonym: "facies posterior renis" EXACT LATIN [FMA:15590, FMA:TA] +xref: FMA:15590 +xref: http://linkedlifedata.com/resource/umls/id/C0227610 +xref: http://www.snomedbrowser.com/Codes/Details/279376000 +xref: NCIT:C32895 +is_a: UBERON:0036215 ! anatomical surface region +intersection_of: UBERON:0036215 ! anatomical surface region +intersection_of: bounding_layer_of UBERON:0002113 ! kidney +intersection_of: in_posterior_side_of UBERON:0002113 ! kidney +relationship: bounding_layer_of UBERON:0002113 ! kidney +relationship: in_posterior_side_of UBERON:0002113 ! kidney +relationship: part_of UBERON:0002113 ! kidney + +[Term] +id: UBERON:0035474 +name: right subcostal vein +def: "A vein that extends along the bottom of the twelfth rib on the right side of the body." [ncithesaurus:Right_Subcostal_Vein] +synonym: "vena subcostalis dextra" EXACT [FMA:4844] +xref: FMA:4844 +xref: http://linkedlifedata.com/resource/umls/id/C0501189 +xref: http://www.snomedbrowser.com/Codes/Details/361638003 +xref: NCIT:C53123 +is_a: UBERON:0001099 ! subcostal vein +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0001099 ! subcostal vein +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: in_right_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0035477 +name: lower inner quadrant of breast +def: "The quarter of the breast which is inferior and medial." [ncithesaurus:Lower-inner_Quadrant_of_the_Breast] +synonym: "lower inner quadrant of female breast" EXACT [FMA:61377] +xref: FMA:61377 +xref: http://linkedlifedata.com/resource/umls/id/C0222597 +xref: http://www.snomedbrowser.com/Codes/Details/181135009 +xref: NCIT:C12302 +is_a: UBERON:0035636 ! lower quadrant of breast +is_a: UBERON:0035637 ! inner quadrant of breast +intersection_of: UBERON:0035634 ! quadrant of breast +intersection_of: in_innermost_side_of UBERON:0000310 ! breast +intersection_of: in_posterior_side_of UBERON:0000310 ! breast + +[Term] +id: UBERON:0035480 +name: surface of prostate +def: "The external portion of the prostate including the anterior, inferolateral, lateral and posterior surfaces." [ncithesaurus:Surface_of_the_Prostate] +synonym: "prostatic surface" EXACT [FMA:19590] +synonym: "surface of prostate gland" EXACT [FMA:19590] +xref: FMA:19590 +xref: http://linkedlifedata.com/resource/umls/id/C0426735 +xref: http://www.snomedbrowser.com/Codes/Details/279694003 +xref: NCIT:C13091 +is_a: UBERON:0036215 ! anatomical surface region +intersection_of: UBERON:0036215 ! anatomical surface region +intersection_of: bounding_layer_of UBERON:0002367 ! prostate gland +relationship: bounding_layer_of UBERON:0002367 ! prostate gland +relationship: part_of UBERON:0002367 ! prostate gland + +[Term] +id: UBERON:0035483 +name: left suprarenal vein +def: "A vein that drains blood from the left adrenal gland into the left renal artery." [ncithesaurus:Left_Suprarenal_Vein] +xref: FMA:14349 +xref: http://linkedlifedata.com/resource/umls/id/C0226709 +xref: http://www.snomedbrowser.com/Codes/Details/85087001 +xref: NCIT:C53138 +xref: Suprarenal:veins +is_a: UBERON:0001146 ! suprarenal vein +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0001146 ! suprarenal vein +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0035489 +name: branch of basilar artery +synonym: "basilar arterial branch" EXACT [FMA:76269] +xref: FMA:76269 +xref: http://linkedlifedata.com/resource/umls/id/C1185381 +xref: http://www.snomedbrowser.com/Codes/Details/360537008 +xref: NCIT:C32195 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0001633 ! basilar artery +relationship: branching_part_of UBERON:0001633 ! basilar artery +relationship: part_of UBERON:0001633 ! basilar artery + +[Term] +id: UBERON:0035492 +name: inferior hypophysial artery +def: "The inferior hypophysial artery is an artery supplying the pituitary gland. It is a branch of the cavernous carotid artery (internal carotid artery)." [http://en.wikipedia.org/wiki/Inferior_hypophysial_artery] +synonym: "inferior hypophyseal artery" EXACT [FMA:49846] +xref: FMA:49846 +xref: http://en.wikipedia.org/wiki/Inferior_hypophysial_artery +xref: http://linkedlifedata.com/resource/umls/id/C1261083 +xref: http://www.snomedbrowser.com/Codes/Details/303428003 +xref: NCIT:C32777 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0035403 ! hypophysial artery +relationship: branching_part_of UBERON:0001532 ! internal carotid artery +relationship: part_of UBERON:0001532 ! internal carotid artery + +[Term] +id: UBERON:0035495 +name: hilum of lymph node +def: "The concave side of the lymph node." [ncithesaurus:Lymph_Node_Hilum] +synonym: "hilum nodi lymphoidei" EXACT LATIN [FMA:62842, FMA:TA] +synonym: "lymph node hilum" EXACT [FMA:62842] +xref: FMA:62842 +xref: http://linkedlifedata.com/resource/umls/id/C0229703 +xref: http://www.snomedbrowser.com/Codes/Details/327052008 +xref: NCIT:C33031 +is_a: UBERON:0004885 ! hilum +intersection_of: UBERON:0004885 ! hilum +intersection_of: part_of UBERON:0000029 ! lymph node +relationship: part_of UBERON:0000029 ! lymph node + +[Term] +id: UBERON:0035498 +name: gastrophrenic ligament +def: "the portion of the greater omentum that extends from the greater curvature of the stomach to the inferior surface of the diaphragm" [http://medical-dictionary.thefreedictionary.com/gastrophrenic+ligament] +xref: FMA:16518 +xref: http://linkedlifedata.com/resource/umls/id/C0230231 +xref: http://www.snomedbrowser.com/Codes/Details/260725009 +xref: NCIT:C32670 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005172 ! abdomen element +is_a: UBERON:0008845 ! nonskeletal ligament +intersection_of: UBERON:0008845 ! nonskeletal ligament +intersection_of: connects UBERON:0001103 ! diaphragm +intersection_of: connects UBERON:0001164 ! greater curvature of stomach +intersection_of: part_of UBERON:0005448 ! greater omentum +relationship: connects UBERON:0001103 ! diaphragm +relationship: connects UBERON:0001164 ! greater curvature of stomach +relationship: part_of UBERON:0005448 ! greater omentum + +[Term] +id: UBERON:0035501 +name: unencapsulated tactile receptor +def: "Free nerve endings are widely distributed throughout the body, and are found as branches of unmyelinated, or lightly myelinated fibres grouped in bundles beneath the epithelium. As they penetrate the epithelium, they lose their myelin, and branch among the epithelial cells. Branches of one nerve may cover a wide area and overlap the territories of other nerves. The free nerve endings detect pain, touch, pressure and temperature, and are associated with C fibres." [ncithesaurus:Free_Nerve_Ending] +synonym: "free nerve ending" EXACT [FMA:84005] +synonym: "unencapsulated nerve ending" EXACT [FMA:84005] +xref: FMA:84005 +xref: http://linkedlifedata.com/resource/umls/id/C0228107 +xref: http://www.snomedbrowser.com/Codes/Details/38005009 +xref: NCIT:C13174 +is_a: UBERON:0035016 {source="FMA"} ! tactile mechanoreceptor +disjoint_from: UBERON:0035969 ! encapsulated tactile receptor +relationship: part_of UBERON:0002067 {source="ncithesaurus"} ! dermis + +[Term] +id: UBERON:0035505 +name: right inguinal part of abdomen +synonym: "right iliac fossa viewed surgically" EXACT [FMA:24036] +synonym: "right iliac region" EXACT [FMA:24036] +synonym: "right inguinal region" EXACT [FMA:24036] +xref: FMA:24036 +xref: http://linkedlifedata.com/resource/umls/id/C0230318 +xref: http://www.snomedbrowser.com/Codes/Details/362724003 +xref: NCIT:C33479 +is_a: UBERON:0008337 ! inguinal part of abdomen +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0008337 ! inguinal part of abdomen +intersection_of: in_right_side_of UBERON:0000916 ! abdomen +relationship: in_right_side_of UBERON:0000916 ! abdomen +relationship: part_of UBERON:0000916 ! abdomen + +[Term] +id: UBERON:0035508 +name: branch of posterior cerebral artery +synonym: "posterior cerebral arterial branch" EXACT [FMA:50586] +xref: FMA:50586 +xref: http://linkedlifedata.com/resource/umls/id/C0923792 +xref: http://www.snomedbrowser.com/Codes/Details/314305001 +xref: NCIT:C33351 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0001636 ! posterior cerebral artery +relationship: branching_part_of UBERON:0001636 ! posterior cerebral artery +relationship: part_of UBERON:0001636 ! posterior cerebral artery + +[Term] +id: UBERON:0035514 +name: special sense organ system +xref: FMA:7189 +xref: http://linkedlifedata.com/resource/umls/id/C0228069 +xref: http://www.snomedbrowser.com/Codes/Details/276152001 +xref: NCIT:C13058 +is_a: UBERON:0011216 ! organ system subdivision + +[Term] +id: UBERON:0035520 +name: anterior mediastinal lymph node +def: "A lymph node located in the superior mediastinum that collects lymph from the thymus, the pericardium, and the right side of the heart." [ncithesaurus:Anterior_Mediastinal_Lymph_Node] +synonym: "anterior mediastinal node" EXACT [FMA:12775] +xref: FMA:12775 +xref: http://linkedlifedata.com/resource/umls/id/C0229758 +xref: http://www.snomedbrowser.com/Codes/Details/245335005 +xref: NCIT:C32097 +is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node + +[Term] +id: UBERON:0035523 +name: anterior surface of prostate +def: "The aspect of the prostate facing the pubic symphysis." [ncithesaurus:Anterior_Surface_of_the_Prostate] +synonym: "anterior surface of prostate gland" EXACT [FMA:19591] +synonym: "facies anterior (prostatae)" EXACT [FMA:19591] +synonym: "facies anterior prostatae" EXACT LATIN [FMA:19591, FMA:TA] +xref: FMA:19591 +xref: http://linkedlifedata.com/resource/umls/id/C0227960 +xref: http://www.snomedbrowser.com/Codes/Details/279696001 +xref: NCIT:C13089 +is_a: UBERON:0035480 ! surface of prostate +intersection_of: UBERON:0036215 ! anatomical surface region +intersection_of: bounding_layer_of UBERON:0002367 ! prostate gland +intersection_of: in_anterior_side_of UBERON:0002367 ! prostate gland +relationship: in_anterior_side_of UBERON:0002367 ! prostate gland + +[Term] +id: UBERON:0035526 +name: superficial fibular nerve +def: "A branch of the common fibular nerve that innervates the fibularis longus and brevis muscles, and via branches innervates parts of the dorsal part of the pes." [http://medical-dictionary.thefreedictionary.com/superficial%20fibular%20nerve, ncithesaurus:Superficial_Peroneal_Nerve, UBERON:cjm] +synonym: "superficial peroneal nerve" EXACT [FMA:44699] +xref: FMA:44699 +xref: http://en.wikipedia.org/wiki/Superficial_fibular_nerve +xref: http://linkedlifedata.com/resource/umls/id/C0228952 +xref: http://www.snomedbrowser.com/Codes/Details/181080008 +xref: NCIT:C92603 +is_a: UBERON:0003431 ! leg nerve +is_a: UBERON:0035652 ! fibular nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: branching_part_of UBERON:0001324 ! common fibular nerve +intersection_of: innervates UBERON:0001387 ! fibularis longus +intersection_of: innervates UBERON:0002387 ! pes +intersection_of: innervates UBERON:0010526 ! fibularis brevis +relationship: branching_part_of UBERON:0001324 ! common fibular nerve +relationship: innervates UBERON:0001387 ! fibularis longus +relationship: innervates UBERON:0002387 ! pes +relationship: innervates UBERON:0010526 ! fibularis brevis +relationship: part_of UBERON:0001324 ! common fibular nerve + +[Term] +id: UBERON:0035529 +name: left common iliac artery +synonym: "trunk of left common iliac arterial tree" EXACT [FMA:14766] +xref: FMA:14766 +xref: http://linkedlifedata.com/resource/umls/id/C0226363 +xref: http://www.snomedbrowser.com/Codes/Details/283493001 +xref: NCIT:C32957 +is_a: UBERON:0001191 ! common iliac artery +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0001191 ! common iliac artery +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0035530 +name: basal vein +def: "The basal vein is formed at the anterior perforated substance by the union of (a) a small anterior cerebral vein which accompanies the anterior cerebral artery and supplies the medial surface of the frontal lobe by the fronto-basal vein. (b) the deep middle cerebral vein (deep Sylvian vein), which receives tributaries from the insula and neighboring gyri, and runs in the lower part of the lateral cerebral fissure, and (c) the inferior striate veins, which leave the corpus striatum through the anterior perforated substance. The basal vein passes backward around the cerebral peduncle, and ends in the internal cerebral vein; it receives tributaries from the interpeduncular fossa, the inferior horn of the lateral ventricle, the hippocampal gyrus, and the mid-brain." [http://en.wikipedia.org/wiki/Basal_vein] +synonym: "basal vein of rosenthal" EXACT [FMA:50990] +synonym: "basal veins" RELATED [http://en.wikipedia.org/wiki/Basal_vein] +synonym: "inferior striate vein" RELATED [http://en.wikipedia.org/wiki/Basal_vein] +synonym: "inferior striate veins" RELATED [http://en.wikipedia.org/wiki/Basal_vein] +synonym: "rosenthal's vein" EXACT [FMA:50990] +xref: Basal:vein +xref: FMA:50990 +xref: http://www.snomedbrowser.com/Codes/Details/244398001 +is_a: UBERON:0016564 {source="FMA"} ! deep cerebral vein + +[Term] +id: UBERON:0035532 +name: deep middle cerebral vein +def: "The blood vessel that receives deoxygenated blood from the insula and gyri and drains into the basal vein of Rosenthal deep in the lateral sulcus." [ncithesaurus:Deep_Middle_Cerebral_Vein] +xref: FMA:51309 +xref: http://en.wikipedia.org/wiki/Deep_middle_cerebral_vein +xref: http://linkedlifedata.com/resource/umls/id/C0226586 +xref: http://www.snomedbrowser.com/Codes/Details/279272001 +xref: NCIT:C32440 +is_a: UBERON:0001663 {source="ncithesaurus"} ! cerebral vein +relationship: part_of UBERON:0035530 ! basal vein +relationship: tributary_of UBERON:0035530 ! basal vein + +[Term] +id: UBERON:0035536 +name: body of gallbladder +def: "The middle portion of the gallbladder which is distal to the gallbladder neck and proximal to the gallbladder fundus." [ncithesaurus:Gallbladder_Body] +synonym: "gallbladder body" EXACT [FMA:14537] +xref: FMA:14537 +xref: http://en.wikipedia.org/wiki/Body_of_gallbladder +xref: http://linkedlifedata.com/resource/umls/id/C0227545 +xref: http://www.snomedbrowser.com/Codes/Details/245392006 +xref: NCIT:C32647 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0034944 ! zone of organ +relationship: part_of UBERON:0002110 {source="FMA"} ! gall bladder + +[Term] +id: UBERON:0035539 +name: esophageal artery +def: "Any of several arteries that arise from the aorta and supply blood to the esophagus." [ncithesaurus:Esophageal_Artery] +synonym: "aortic esophageal artery" EXACT [FMA:4149] +synonym: "oesophageal artery" EXACT [FMA:4149] +xref: FMA:4149 +xref: http://linkedlifedata.com/resource/umls/id/C0226294 +xref: http://www.snomedbrowser.com/Codes/Details/56548006 +xref: NCIT:C32535 +is_a: UBERON:0003834 ! thoracic segment blood vessel +is_a: UBERON:0004573 {source="FMA"} ! systemic artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0001043 ! esophagus +relationship: branching_part_of UBERON:0001515 {source="FMA"} ! thoracic aorta +relationship: part_of UBERON:0001515 ! thoracic aorta +relationship: supplies UBERON:0001043 ! esophagus + +[Term] +id: UBERON:0035542 +name: upper inner quadrant of breast +def: "The quarter of the breast which is superior and medial." [ncithesaurus:Upper-inner_Quadrant_of_the_Breast] +synonym: "upper inner quadrant of female breast" EXACT [FMA:61375] +xref: FMA:61375 +xref: http://linkedlifedata.com/resource/umls/id/C0222596 +xref: http://www.snomedbrowser.com/Codes/Details/181132007 +xref: NCIT:C12301 +is_a: UBERON:0035635 ! upper quadrant of breast +is_a: UBERON:0035637 ! inner quadrant of breast +intersection_of: UBERON:0035634 ! quadrant of breast +intersection_of: in_anterior_side_of UBERON:0000310 ! breast +intersection_of: in_innermost_side_of UBERON:0000310 ! breast + +[Term] +id: UBERON:0035545 +name: deep lymphatic vessel +def: "The tubules that carry lymph throughout the body that are in the interior of the body or limbs." [ncithesaurus:Deep_Lymphatic_Vessel] +synonym: "deep lymph vessel" EXACT [FMA:52012] +xref: FMA:52012 +xref: http://linkedlifedata.com/resource/umls/id/C1282746 +xref: http://www.snomedbrowser.com/Codes/Details/14033005 +xref: NCIT:C32439 +is_a: UBERON:0001473 ! lymphatic vessel +intersection_of: UBERON:0001473 ! lymphatic vessel +intersection_of: part_of UBERON:0035551 ! deep vasculature +relationship: part_of UBERON:0035551 ! deep vasculature + +[Term] +id: UBERON:0035546 +name: uveal vein +synonym: "ciliary vein" EXACT [FMA:51797] +xref: FMA:51797 +xref: http://www.snomedbrowser.com/Codes/Details/149683007 +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0001768 ! uvea +relationship: drains UBERON:0001768 ! uvea + +[Term] +id: UBERON:0035547 +name: posterior ciliary vein +def: "The outer layer of the choroid (lamina vasculosa) consists, in part, of the larger branches of the short ciliary arteries which run forward between the veins, before they bend inward to end in the capillaries, but is formed principally of veins, named, from their arrangement, the vorticose veins. They converge to four or five equidistant trunks, which pierce the sclera about midway between the sclero-corneal junction and the entrance of the optic nerve. They drain uveal tract." [http://en.wikipedia.org/wiki/Vorticose_veins] +synonym: "posterior veins" RELATED [http://en.wikipedia.org/wiki/Vorticose_veins] +synonym: "venae vorticasae" RELATED [http://en.wikipedia.org/wiki/Vorticose_veins] +synonym: "venae vorticosae" RELATED [http://en.wikipedia.org/wiki/Vorticose_veins] +synonym: "venea vorticosae" RELATED [http://en.wikipedia.org/wiki/Vorticose_veins] +synonym: "vortex vein" RELATED [http://en.wikipedia.org/wiki/Vorticose_veins] +synonym: "vortex veins" RELATED [http://en.wikipedia.org/wiki/Vorticose_veins] +synonym: "vorticosae" RELATED [http://en.wikipedia.org/wiki/Vorticose_veins] +synonym: "vorticose vein" EXACT [FMA:51796] +synonym: "vorticose vein" RELATED [http://en.wikipedia.org/wiki/Vorticose_veins] +xref: FMA:51796 +xref: http://www.snomedbrowser.com/Codes/Details/361319002 +xref: http://www.snomedbrowser.com/Codes/Details/368813004 +xref: Vorticose:veins +is_a: UBERON:0035546 {source="FMA"} ! uveal vein + +[Term] +id: UBERON:0035548 +name: colic artery +xref: http://www.snomedbrowser.com/Codes/Details/77852007 +is_a: UBERON:0001637 ! artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0001155 ! colon +relationship: supplies UBERON:0001155 ! colon + +[Term] +id: UBERON:0035549 +name: vasculature of integument +def: "The part of the circulatory system that lies within the subcutaneous tissue layers close to the surface of the skin." [http://orcid.org/0000-0002-6601-2165] +synonym: "dermis vasculature" NARROW [] +synonym: "hypodermis vasculature" NARROW [] +synonym: "skin vasculature" RELATED [] +synonym: "subcutaneous vasculature" RELATED [] +synonym: "superficial part of circulatory system" EXACT [] +synonym: "superficial vasculature" EXACT [] +synonym: "vasculature of skin" RELATED [FMA:225275] +xref: FMA:225275 +is_a: UBERON:0002049 ! vasculature +intersection_of: UBERON:0002049 ! vasculature +intersection_of: located_in UBERON:0002199 ! integument +relationship: located_in UBERON:0002199 ! integument + +[Term] +id: UBERON:0035550 +name: superficial vein +def: "Any of the veins carrying deoxygenated blood from the subcutaneous tissue layers." [ncithesaurus:Superficial_Vein] +synonym: "superfical vein" RELATED [http://en.wikipedia.org/wiki/Superficial_vein] +synonym: "superficial veins" RELATED [http://en.wikipedia.org/wiki/Superficial_vein] +synonym: "superficial vessels" RELATED [http://en.wikipedia.org/wiki/Superficial_vein] +xref: FMA:76719 +xref: http://linkedlifedata.com/resource/umls/id/C0226513 +xref: http://www.snomedbrowser.com/Codes/Details/341382008 +xref: NCIT:C33666 +xref: Superficial:vein +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: part_of UBERON:0035549 ! vasculature of integument +relationship: part_of UBERON:0035549 ! vasculature of integument + +[Term] +id: UBERON:0035551 +name: deep vasculature +def: "The part of the circulatory system that lies deep beneath the subcutaneous tissue layers away from the surface of the skin." [http://orcid.org/0000-0002-6601-2165] +synonym: "deep part of circulatory system" EXACT [] +is_a: UBERON:0002049 ! vasculature +intersection_of: UBERON:0002049 ! vasculature +intersection_of: deep_to UBERON:0002199 ! integument +relationship: deep_to UBERON:0002199 ! integument + +[Term] +id: UBERON:0035552 +name: deep vein +def: "A blood vessel carrying deoxygenated blood far beneath the skin usually accompanying an artery." [ncithesaurus:Deep_Vein] +synonym: "deep veins" RELATED [http://en.wikipedia.org/wiki/Deep_vein] +synonym: "deep vessels" RELATED [http://en.wikipedia.org/wiki/Deep_vein] +xref: Deep:vein +xref: FMA:76718 +xref: http://linkedlifedata.com/resource/umls/id/C0226514 +xref: http://www.snomedbrowser.com/Codes/Details/341484008 +xref: NCIT:C32444 +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: part_of UBERON:0035551 ! deep vasculature +relationship: part_of UBERON:0035551 ! deep vasculature + +[Term] +id: UBERON:0035553 +name: left cardiac chamber +def: "Any chamber of the left side of the heart" [http://orcid.org/0000-0002-6601-2165] +xref: FMA:7166 +xref: http://www.snomedbrowser.com/Codes/Details/362008007 +is_a: UBERON:0004151 ! cardiac chamber +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0004151 ! cardiac chamber +intersection_of: in_left_side_of UBERON:0000948 ! heart +relationship: in_left_side_of UBERON:0000948 ! heart + +[Term] +id: UBERON:0035554 +name: right cardiac chamber +def: "Any chamber of the right side of the heart" [http://orcid.org/0000-0002-6601-2165] +xref: FMA:7165 +xref: http://www.snomedbrowser.com/Codes/Details/362007002 +is_a: UBERON:0004151 ! cardiac chamber +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0004151 ! cardiac chamber +intersection_of: in_right_side_of UBERON:0000948 ! heart +relationship: in_right_side_of UBERON:0000948 ! heart + +[Term] +id: UBERON:0035555 +name: lateral line sense organ +is_a: UBERON:0010521 ! electroreceptor organ +relationship: innervated_by UBERON:0008906 ! lateral line nerve +relationship: part_of UBERON:0002540 ! lateral line system + +[Term] +id: UBERON:0035560 +name: obsolete fascia dentata +def: "OBSOLETE: The fascia dentata is the earliest stage of the hippocampal circuit. Its primary input is the perforant path from the superficial layers of entorhinal cortex. Its principal neurons are tiny granule cells which give rise to unmyelinated axons called the mossy fibers which project to the hilus and CA3. The fascia dentata of the rat contains approximately 1,000,000 granule cells. It receives feedback connections from mossy cells in the hilus at distant levels in the septal and temporal directions. The fascia dentata and the hilus together make up the dentate gyrus. As with all regions of the hippocampus, the dentate gyrus also receives GABAergic and cholinergic input from the medial septum and the diagonal band of Broca." [http://en.wikipedia.org/wiki/Fascia_dentata] +comment: This class has been retired. Based on usage and FMA, we have added fascia dentata as a synonym for dentate gyrus. (Maryann Martone)[NIFSTD] +synonym: "fascia dentata" RELATED [BIRNLEX:1191] +synonym: "fascia dentata (crosby)" RELATED [BIRNLEX:1191] +synonym: "fascia dentata hippocampi (shantha)" RELATED [BIRNLEX:1191] +xref: http://linkedlifedata.com/resource/umls/id/C0152314 +is_obsolete: true +replaced_by: UBERON:0001885 +consider: BIRNLEX:1191 +consider: BTO:0002615 +consider: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=180 +consider: Wikipedia:Fascia_dentata + +[Term] +id: UBERON:0035561 +name: styliform element +def: "An unjointed, rod-like bony or cartilaginous structures that extend from distal limb joints in tetrapods." [https://doi.org/10.1038/nature14423, https://github.com/obophenotype/uberon/issues/695] +is_a: UBERON:0015021 ! forelimb endochondral element +relationship: connected_to UBERON:0009880 ! carpal skeleton +property_value: dc-contributor https://github.com/alex-dececchi +property_value: dc-contributor https://github.com/balhoff +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/RDruzinsky + +[Term] +id: UBERON:0035562 +name: intermediate pretectal nucleus +synonym: "IPT" RELATED ABBREVIATION [DMBA:16598] +xref: DMBA:16598 +is_a: UBERON:0014450 ! pretectal nucleus + +[Term] +id: UBERON:0035563 +name: magnocellular superficial pretectal nucleus +def: "A nucleus that is part of the superficial pretectum and is characterized by large widely scattered cells." [ISBN:0471888893] +synonym: "magnocellular superficial pretectal nuclei" EXACT PLURAL [ZFA:0000235] +synonym: "PSm" RELATED ABBREVIATION [ISBN:0471888893] +xref: TAO:0000235 +xref: ZFA:0000235 +is_a: UBERON:0006569 {source="ZFA"} ! diencephalic nucleus +is_a: UBERON:0035568 ! superficial pretectal nucleus + +[Term] +id: UBERON:0035564 +name: parvocellular superficial pretectal nucleus +def: "A nucleus that is part of the superficial pretectum and is characterized by small cells." [ISBN:0471888893, ZFA:0000406] +synonym: "parvocellular superficial pretectal nuclei" EXACT PLURAL [ZFA:0000406] +synonym: "PSp" RELATED ABBREVIATION [ISBN:0471888893] +synonym: "superficial pretectal nucleus" BROAD SENSU [ISBN:0471888893, NCBITaxon:27686, NCBITaxon:7900] +xref: TAO:0000406 +xref: ZFA:0000406 +is_a: UBERON:0006569 {source="ZFA"} ! diencephalic nucleus +is_a: UBERON:0035568 ! superficial pretectal nucleus + +[Term] +id: UBERON:0035565 +name: caudal pretectal nucleus +def: "Diencephalic nucleus that is part of the superficial pretectum and is rostrally contiguous with the magnocellular superficial pretectal nucleus. Cells of the caudal pretectal nucleus are slightly smaller and less orderly around a central neuropil than those of the magnocellular superficial pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [ZFA:0000631] +synonym: "caudal pretectal nuclei" EXACT PLURAL [ZFA:0000631] +synonym: "nucleus glomerulosus" RELATED [] +synonym: "posterior pretectal nucleus" RELATED INCONSISTENT [ZFA:0000631] +xref: TAO:0000631 +xref: ZFA:0000631 +is_a: UBERON:0006569 {source="ZFA"} ! diencephalic nucleus +is_a: UBERON:0035568 ! superficial pretectal nucleus +relationship: present_in_taxon NCBITaxon:32455 + +[Term] +id: UBERON:0035566 +name: central pretectal nucleus +def: "Any nucleus found in the central pretectum." [http://orcid.org/0000-0002-6601-2165] +synonym: "nucleus praetectalis centralis" EXACT LATIN [ZFA:0000635] +xref: TAO:0000635 +xref: ZFA:0000635 +is_a: UBERON:0014450 ! pretectal nucleus +intersection_of: UBERON:0000125 ! neural nucleus +intersection_of: part_of UBERON:2000183 ! central pretectum +relationship: part_of UBERON:2000183 ! central pretectum +relationship: present_in_taxon NCBITaxon:118040 {source="ISBN:0471888893"} +relationship: present_in_taxon NCBITaxon:7898 {source="ISBN:0471888893"} + +[Term] +id: UBERON:0035567 +name: accessory pretectal nucleus +def: "Diencephalic nucleus that is part of the central pretectum and lies dorsolateral to the caudal pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [ZFA:0000714] +synonym: "APN" EXACT [ZFA:0000714] +synonym: "nucleus praetectalis accessorius" EXACT LATIN [ZFA:0000714] +xref: TAO:0000714 +xref: ZFA:0000714 +is_a: UBERON:0006569 {source="ZFA"} ! diencephalic nucleus +is_a: UBERON:0035566 ! central pretectal nucleus + +[Term] +id: UBERON:0035568 +name: superficial pretectal nucleus +def: "Any nucleus found in the superficial pretectum." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0014450 ! pretectal nucleus +intersection_of: UBERON:0000125 ! neural nucleus +intersection_of: part_of UBERON:2000687 ! superficial pretectum +relationship: part_of UBERON:2000687 ! superficial pretectum +relationship: present_in_taxon NCBITaxon:118040 {src="ISBN:0471888893"} + +[Term] +id: UBERON:0035569 +name: periventricular pretectal nucleus +def: "A nucleus medial to the central pretectal nucleus in the periventricular zone." [ISBN:0471888893] +comment: Can be subdivided into dorsal and ventral[ISBN:0471888893] +synonym: "periventricular pretectum" EXACT [ZFA:0000601] +synonym: "pretectal periventricular nuclei" EXACT PLURAL [ZFA:0000601] +synonym: "pretectal periventricular nucleus" EXACT [ZFA:0000601] +xref: TAO:0000601 +xref: ZFA:0000601 +is_a: UBERON:0006569 ! diencephalic nucleus +is_a: UBERON:0014450 ! pretectal nucleus +relationship: part_of UBERON:2000293 {source="ZFA"} ! synencephalon +relationship: present_in_taxon NCBITaxon:118040 {src="ISBN:0471888893"} + +[Term] +id: UBERON:0035570 +name: tectothalamic tract +synonym: "fibre tettotalamiche@it" RELATED [NeuroNames:1424] +synonym: "tectothalamic fibers" EXACT [NeuroNames:1424] +synonym: "tectothalamic fibers" RELATED [NeuroNames:1424] +synonym: "tectothalamic pathway" RELATED [NeuroNames:1424] +synonym: "tectothalamic tract" RELATED [NeuroNames:1424] +synonym: "ttp" RELATED ABBREVIATION [MBA:357] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1424 +xref: MBA:357 +is_a: UBERON:0011591 ! tract of diencephalon +intersection_of: UBERON:0007702 ! tract of brain +intersection_of: extends_fibers_into UBERON:0001945 ! superior colliculus +intersection_of: part_of UBERON:0001908 ! optic tract +relationship: extends_fibers_into UBERON:0001945 ! superior colliculus +relationship: part_of UBERON:0001908 ! optic tract + +[Term] +id: UBERON:0035572 +name: nucleus praetectalis profundus +def: "A neural nucleus of the pretectal region that lies lateral to the posterior commissure and gives rise to widespread projections." [ISBN:0471888893] +synonym: "nucleus pratectalis profundus" EXACT LATIN [] +synonym: "profundal pretectal nucleus" EXACT [] +is_a: UBERON:0014450 ! pretectal nucleus +relationship: present_in_taxon NCBITaxon:8293 + +[Term] +id: UBERON:0035573 +name: dorsal pretectal periventricular nucleus +synonym: "optic nucleus of posterior commissure" RELATED [ISBN:0471888893] +synonym: "PPd" RELATED ABBREVIATION [ISBN:0471888893] +is_a: UBERON:0035569 ! periventricular pretectal nucleus + +[Term] +id: UBERON:0035574 +name: ventral pretectal periventricular nucleus +synonym: "PPv" RELATED ABBREVIATION [ISBN:0471888893] +is_a: UBERON:0035569 ! periventricular pretectal nucleus + +[Term] +id: UBERON:0035575 +name: paracommissural nucleus of solitary tract +xref: FMA:77466 +is_a: UBERON:0009050 {source="FMA"} ! nucleus of solitary tract + +[Term] +id: UBERON:0035577 +name: paracommissural periventricular pretectal nucleus +synonym: "paracommissural nucleus" EXACT [ZFA:0000404] +xref: TAO:0000404 +xref: ZFA:0000404 +is_a: UBERON:0035569 ! periventricular pretectal nucleus + +[Term] +id: UBERON:0035580 +name: nucleus geniculatus of pretectum +comment: Receives retinal input +synonym: "nucleus geniculatus pretectalis" EXACT LATIN [ISBN:0471888893] +is_a: UBERON:0014450 ! pretectal nucleus +relationship: present_in_taxon NCBITaxon:8459 {source="ISBN:0471888893"} +relationship: present_in_taxon NCBITaxon:8504 {source="ISBN:0471888893"} + +[Term] +id: UBERON:0035581 +name: nucleus lentiformis of pretectum +comment: Receives retinal input +synonym: "nucleus lentiformis mesencephali" EXACT LATIN [ISBN:0471888893] +is_a: UBERON:0014450 ! pretectal nucleus +relationship: present_in_taxon NCBITaxon:8459 {source="ISBN:0471888893"} +relationship: present_in_taxon NCBITaxon:8504 {source="ISBN:0471888893"} + +[Term] +id: UBERON:0035582 +name: nucleus posteriodorsalis of pretectum +comment: Receives retinal input +synonym: "nucleus posteriodorsalis" EXACT LATIN [ISBN:0471888893] +is_a: UBERON:0014450 ! pretectal nucleus +relationship: present_in_taxon NCBITaxon:8459 {source="ISBN:0471888893"} +relationship: present_in_taxon NCBITaxon:8504 {source="ISBN:0471888893"} + +[Term] +id: UBERON:0035583 +name: nucleus lentiformis thalamus +synonym: "nucleus lentiformis thalami" RELATED LATIN [ISBN:0471888893] +is_a: UBERON:0014450 ! pretectal nucleus +relationship: present_in_taxon NCBITaxon:8504 {source="ISBN:0471888893"} + +[Term] +id: UBERON:0035584 +name: ventral pretectal nucleus (sauropsida) +synonym: "ventral pretectal nucleus" RELATED [ISBN:0471888893] +is_a: UBERON:0014450 ! pretectal nucleus +relationship: present_in_taxon NCBITaxon:8504 {source="ISBN:0471888893"} + +[Term] +id: UBERON:0035585 +name: tectal gray nucleus (Testudines) +synonym: "griseum tectalis" EXACT LATIN [ISBN:0471888893] +synonym: "tectal gray" RELATED [ISBN:0471888893] +synonym: "tectal grey" RELATED [] +is_a: UBERON:0014450 ! pretectal nucleus + +[Term] +id: UBERON:0035586 +name: nucleus lentiformis mesencephali (Aves) +def: "A pretectal nucleus in Aves that receives heavy retinal input and is hypothesized to be homologous to the nucleus of the optic tract of Mammals." [ISBN:0471888893] +is_a: UBERON:0014450 ! pretectal nucleus + +[Term] +id: UBERON:0035587 +name: nucleus pretectalis diffusus +is_a: UBERON:0014450 ! pretectal nucleus + +[Term] +id: UBERON:0035588 +name: subpretectal complex of Aves +def: "A nuclear complex in the ventral pretectal region." [ISBN:0471888893] +is_a: UBERON:0003528 ! brain gray matter +is_a: UBERON:0007245 ! nuclear complex of neuraxis +relationship: part_of UBERON:0001944 ! pretectal region + +[Term] +id: UBERON:0035589 +name: nucleus subpretectalis +is_a: UBERON:0014450 ! pretectal nucleus +relationship: part_of UBERON:0035588 ! subpretectal complex of Aves + +[Term] +id: UBERON:0035590 +name: nucleus interstitio-pretectalis-subpretectalis +is_a: UBERON:0014450 ! pretectal nucleus +relationship: part_of UBERON:0035588 ! subpretectal complex of Aves + +[Term] +id: UBERON:0035591 +name: lateral spiriform nucleus +is_a: UBERON:0014450 ! pretectal nucleus +disjoint_from: UBERON:0035592 {source="lexical"} ! medial spiriform nucleus + +[Term] +id: UBERON:0035592 +name: medial spiriform nucleus +is_a: UBERON:0014450 ! pretectal nucleus + +[Term] +id: UBERON:0035593 +name: nucleus circularis of pretectum +synonym: "nucleus circularis" BROAD [ISBN:0471888893] +is_a: UBERON:0014450 ! pretectal nucleus + +[Term] +id: UBERON:0035594 +name: accessory optic system +def: "Subdivision of visual system that processes movements of images across retina and regulates the movement of eyes to keep the image stable." [http://orcid.org/0000-0002-6601-2165, ISBN:0471888893] +is_a: UBERON:0011216 ! organ system subdivision +relationship: part_of UBERON:0002104 ! visual system + +[Term] +id: UBERON:0035595 +name: accessory optic tract +synonym: "accessory optic fibers" RELATED [] +synonym: "aot" RELATED ABBREVIATION [MBA:876] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1189 +xref: MBA:876 +is_a: UBERON:0011591 ! tract of diencephalon +intersection_of: UBERON:0001018 ! axon tract +intersection_of: part_of UBERON:0035594 ! accessory optic system +relationship: part_of UBERON:0001908 ! optic tract +relationship: part_of UBERON:0035594 ! accessory optic system + +[Term] +id: UBERON:0035596 +name: circular nucleus of antherior hypothalamic nucleus +def: "A group of cells located in the central part of the anterior hypothalamic nucleus in the anterior hypothalamic region of the rat ( Swanson-2004 ) and the mouse ( Paxinos-2001 ). Functionally it belongs to the magnocellular neuroendocrine cell groups of the subcortical motor system ( Swanson-2004 )" [NeuroNames:1853] +comment: group of magnocellular elements arranged in a ring around a capillary bed. The cells are predominantly monopolar, tightly packed, and are flattened at the outer border of the ring. The entire nucleus is surrounded or encapsulated by myelinated fibers, hypothesized to be an osmoreceptor[PMID:974791] +synonym: "circular nucleus" RELATED [NeuroNames:1853] +synonym: "NC" RELATED ABBREVIATION [MBA:432] +synonym: "nucleus circularis" BROAD LATIN [MBA:432] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1853 +xref: MBA:432 +is_a: UBERON:0006568 ! hypothalamic nucleus +relationship: part_of UBERON:0002271 {source="MBA"} ! periventricular zone of hypothalamus + +[Term] +id: UBERON:0035597 +name: profundal placode +def: "An embryonic structure positioned halfway between the prospective eye and ear, adjacent to the future midbrain-hindbrain boundary. The profundal and the trigeminal ganglia are separate distally but fused at their proximal end as they condense around NF stage 24." [http://www.ncbi.nlm.nih.gov/pubmed/21452441, https://github.com/obophenotype/uberon/issues/693, XAO:0004093] +synonym: "ophthalmic lobe of trigeminal placode" EXACT [NCBIBook:NBK53171] +synonym: "ophthalmic lobe of trigeminal placode complex" EXACT [NCBIBook:NBK53171] +synonym: "ophthalmic placode" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/22512454] +synonym: "profundus placode" EXACT [XAO:0004093] +xref: XAO:0004093 +is_a: UBERON:0009955 ! neurogenic placode +relationship: part_of UBERON:0003070 ! trigeminal placode complex + +[Term] +id: UBERON:0035598 +name: maxillomandibular placode +synonym: "maxillomandibular lobe of trigeminal placode complex" EXACT [NCBIBook:NBK53171] +synonym: "trigeminal placode" BROAD [NCBIBook:NBK53171] +is_a: UBERON:0009955 ! neurogenic placode +relationship: part_of UBERON:0003070 ! trigeminal placode complex + +[Term] +id: UBERON:0035599 +name: profundal part of trigeminal ganglion complex +synonym: "ophthalmic division of trigeminal ganglion" RELATED [] +synonym: "ophthalmic ganglion" NARROW SENSU [] +synonym: "ophthalmic part of trigeminal ganglion" RELATED [] +synonym: "profundal ganglion" NARROW SENSU [] +is_a: UBERON:0001714 ! cranial ganglion +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: develops_from UBERON:0035597 ! profundal placode +relationship: immediate_transformation_of UBERON:0035597 ! profundal placode +relationship: part_of UBERON:0001675 ! trigeminal ganglion + +[Term] +id: UBERON:0035601 +name: maxillomandibular part of trigeminal ganglion complex +synonym: "maxillomandibular division of trigeminal ganglion" RELATED [] +synonym: "maxillomandibular part of trigeminal ganglion" RELATED [] +synonym: "ophthalmic ganglion" NARROW SENSU [] +synonym: "profundal ganglion" NARROW SENSU [] +is_a: UBERON:0001714 ! cranial ganglion +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: develops_from UBERON:0035598 ! maxillomandibular placode +relationship: immediate_transformation_of UBERON:0035598 ! maxillomandibular placode +relationship: part_of UBERON:0001675 ! trigeminal ganglion + +[Term] +id: UBERON:0035602 +name: collar nerve cord +def: "A nerve tract found in marine worms that is located in the collar body region (three body regions in marine worms: proboscis, collar (extending into tentacle-fringed arms) and trunk)" [Bgee:AN, http://www.ncbi.nlm.nih.gov/pubmed/25903626] +is_a: UBERON:0005053 ! primary nerve cord +relationship: part_of UBERON:0035604 ! enteropneust collar + +[Term] +id: UBERON:0035603 +name: enteropneust proboscis +def: "Anteriormost of the three body regions of an enteropneust." [http://en.wikipedia.org/wiki/Acorn_worm, http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0000475 ! organism subdivision + +[Term] +id: UBERON:0035604 +name: enteropneust collar +def: "Middle of the three body regions of an enteropneust." [http://en.wikipedia.org/wiki/Acorn_worm, http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0000475 ! organism subdivision + +[Term] +id: UBERON:0035605 +name: enteropneust trunk +def: "Posteriormost of the three body regions of an enteropneust." [http://en.wikipedia.org/wiki/Acorn_worm, http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0000475 ! organism subdivision + +[Term] +id: UBERON:0035606 +name: cartilage of external acoustic meatus +synonym: "cartilage of acoustic meatus" EXACT [FMA:61298] +synonym: "cartilage of auditory canal" EXACT [FMA:61298] +synonym: "cartilago meatus acustici" EXACT [FMA:TA] +synonym: "external acoustic meatus cartilage" EXACT [FMA:61298] +xref: FMA:61298 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0034944 ! zone of organ +intersection_of: UBERON:0034944 ! zone of organ +intersection_of: part_of UBERON:0001352 ! external acoustic meatus +intersection_of: part_of UBERON:0001867 ! cartilage of external ear +relationship: part_of UBERON:0001352 ! external acoustic meatus +relationship: part_of UBERON:0001867 ! cartilage of external ear + +[Term] +id: UBERON:0035607 +name: accessory nerve cord of dorsal region +def: "Any longitudinally extending condensed cluster of neurons and processes that runs along the dorsal mid-line of the animal that is not the most prominent nerve cord." [http://en.wikipedia.org/wiki/Dorsal_nerve_cord, http://orcid.org/0000-0002-6601-2165] +synonym: "dorsal cord" RELATED [WBbt:0006750] +synonym: "dorsal nerve cord" NARROW [WBbt:0006750] +xref: WBbt:0006750 +is_a: UBERON:0011215 {source="cjm"} ! central nervous system cell part cluster +relationship: intersects_midsagittal_plane_of UBERON:0001137 ! dorsum +relationship: part_of UBERON:0001137 ! dorsum + +[Term] +id: UBERON:0035608 +name: dura mater lymph vessel +def: "Any lymph vessel that is located in the dura mater of the brain." [https://doi.org/10.1038/nature14432, https://doi.org/10.1111/joa.12381] +comment: Louveau et al (DOI:10.1038/nature14432) claim the discovery of lymphatics in the cerebral dura mater, but this is disputed by Bucchieri et al (DOI:10.1111/joa.12381) +synonym: "dural lymph vasculature" RELATED [] +synonym: "dural lymph vessel" EXACT [] +is_a: UBERON:0001473 ! lymphatic vessel +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0001473 ! lymphatic vessel +intersection_of: located_in UBERON:0002363 ! dura mater +relationship: located_in UBERON:0002363 ! dura mater +relationship: part_of UBERON:0010743 ! meningeal cluster + +[Term] +id: UBERON:0035609 +name: outer root sheath companion layer +def: "the innermost layer of the outer root sheath." [http://www.keratin.com/aa/aa022.shtml#03] +xref: BTO:0003970 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0013754 ! integumentary system layer +relationship: part_of UBERON:0005942 {source="BTO"} ! hair outer root sheath + +[Term] +id: UBERON:0035610 +name: hair canal +def: "Tubular connection between the epidermal surface and the most distal part of the inner root sheath. Contains the hair shaft." [https://doi.org/10.1016/j.cub.2008.12.005] +is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0004111 ! anatomical conduit +intersection_of: conduit_for UBERON:0002074 ! hair shaft +intersection_of: connects UBERON:0001003 ! skin epidermis +intersection_of: connects UBERON:0005941 ! hair inner root sheath +relationship: conduit_for UBERON:0002074 ! hair shaft +relationship: connects UBERON:0001003 ! skin epidermis +relationship: connects UBERON:0005941 ! hair inner root sheath +relationship: part_of UBERON:0000014 ! zone of skin + +[Term] +id: UBERON:0035611 +name: hair peg +def: "Column of keratinocytes growing into the dermis during embryonic hair follicle development. The concave proximal end starts to encase the dermal condensate, the future dermal papilla." [https://doi.org/10.1016/j.cub.2008.12.005] +is_a: UBERON:0005423 ! developing anatomical structure +relationship: part_of UBERON:0002067 ! dermis + +[Term] +id: UBERON:0035612 +name: nasal turbinal +def: "A skeletal element of the ethmoid region with complex morphology that are lined with mucuous membranes involved in either olfaction or air conditioning." [http://en.wikipedia.org/wiki/Nasal_concha, http://palaeos.com/vertebrates/bones/braincase/ethmoid.html, UBERON:cjm] +synonym: "concha" RELATED [EMAPA:25093] +synonym: "conchae nasales" RELATED LATIN [http://en.wikipedia.org/wiki/Nasal_concha] +synonym: "nasal concha" RELATED [] +synonym: "nasal turbinal" EXACT [] +synonym: "nasal turbinal element" EXACT [] +synonym: "nasal turbinate" EXACT [] +synonym: "turbinal" EXACT [http://palaeos.com/vertebrates/bones/braincase/ethmoid.html] +synonym: "turbinate" EXACT [] +is_a: UBERON:0010363 ! endochondral element +relationship: located_in UBERON:0001707 ! nasal cavity +relationship: part_of UBERON:0011241 {source="ISBN:0073040584"} ! ethmoid region + +[Term] +id: UBERON:0035617 +name: peripharyngeal space +def: "The space filled with loose areolar tissue surrounding the pharynx; it is divided into two major divisions, the parapharyngeal space and the retropharyngeal space." [ISBN:0683400088, MGI:cs] +xref: FMA:84964 +xref: http://www.snomedbrowser.com/Codes/Details/314725004 +xref: Peripharyngeal:space +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0007811 ! craniocervical region +relationship: surrounds UBERON:0001042 ! chordate pharynx + +[Term] +id: UBERON:0035618 +name: parapharyngeal space +def: "The portion of the peripharyngeal space limited by the lateral wall of the pharynx, the cervical vertebrae and medial pterygoid muscle." [ISBN:0683400088, MGI:cs] +synonym: "lateral pharyngeal space" EXACT [FMA:55081] +synonym: "lateral pharyngeal space" RELATED [CALOHA:TS-2357] +synonym: "parapharyngeal space" EXACT [FMA:55081] +synonym: "spatium parapharyngeum" EXACT [FMA:TA] +xref: CALOHA:TS-2357 +xref: FMA:55081 +xref: http://www.snomedbrowser.com/Codes/Details/180439004 +xref: http://www.snomedbrowser.com/Codes/Details/280190005 +xref: Parapharyngeal:space +is_a: UBERON:0035617 {source="FMA"} ! peripharyngeal space + +[Term] +id: UBERON:0035619 +name: retropharyngeal space +def: "The portion of the peripharyngeal space that is located posterior to the pharynx." [ISBN:0683400088, MGI:cs] +synonym: "Henke's space" EXACT [ISBN:0683400088, MGI:cs] +synonym: "postpharyngeal space" EXACT [ISBN:0683400088, MGI:cs] +synonym: "spatium retropharyngeum" EXACT LATIN [FMA:84965, FMA:TA] +xref: FMA:84965 +is_a: UBERON:0035617 {source="FMA"} ! peripharyngeal space + +[Term] +id: UBERON:0035634 +name: quadrant of breast +def: "The part of the breast that is bordered by the intermammary line and a perpendicular line bisecting the nipple." [UBERON:cjm] +synonym: "breast quadrant" EXACT [FMA:61373] +xref: FMA:61373 +is_a: UBERON:0000475 ! organism subdivision +relationship: adjacent_to UBERON:0013771 ! line connecting laterally paired nipples +relationship: part_of UBERON:0000310 ! breast + +[Term] +id: UBERON:0035635 +name: upper quadrant of breast +is_a: UBERON:0035634 ! quadrant of breast +intersection_of: UBERON:0035634 ! quadrant of breast +intersection_of: in_anterior_side_of UBERON:0000310 ! breast +relationship: immediately_anterior_to UBERON:0013771 ! line connecting laterally paired nipples +relationship: in_anterior_side_of UBERON:0000310 ! breast + +[Term] +id: UBERON:0035636 +name: lower quadrant of breast +is_a: UBERON:0035634 ! quadrant of breast +intersection_of: UBERON:0035634 ! quadrant of breast +intersection_of: in_posterior_side_of UBERON:0000310 ! breast +relationship: immediately_posterior_to UBERON:0013771 ! line connecting laterally paired nipples +relationship: in_posterior_side_of UBERON:0000310 ! breast + +[Term] +id: UBERON:0035637 +name: inner quadrant of breast +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:0035634 ! quadrant of breast +intersection_of: UBERON:0035634 ! quadrant of breast +intersection_of: in_innermost_side_of UBERON:0000310 ! breast +relationship: in_innermost_side_of UBERON:0000310 ! breast + +[Term] +id: UBERON:0035638 +name: outer quadrant of breast +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:0035634 ! quadrant of breast +intersection_of: UBERON:0035634 ! quadrant of breast +intersection_of: in_outermost_side_of UBERON:0000310 ! breast +relationship: in_outermost_side_of UBERON:0000310 ! breast + +[Term] +id: UBERON:0035639 +name: ocular adnexa +def: "The parts of the orbital region that are outside of the the eyeball, including the lacrimal apparatus, the extraocular muscles and the eyelids, eyelashes, eyebrows and the conjunctiva" [HPO:pr, http://medical-dictionary.thefreedictionary.com/ocular+adnexa, https://github.com/obophenotype/uberon/issues/1132, UBERON:cjm] +synonym: "accessory parts of orbital region" RELATED [] +synonym: "accessory visual structures" RELATED [http://en.wikipedia.org/wiki/Accessory_visual_structures] +synonym: "accessory visual structures" RELATED [FMA:76554] +synonym: "accessory visual structures set" RELATED [FMA:76554] +synonym: "adnexa oculi" EXACT LATIN [http://medical-dictionary.thefreedictionary.com/ocular+adnexa] +synonym: "adnexal parts of orbital region" RELATED [] +synonym: "appendage of eye" RELATED [http://medical-dictionary.thefreedictionary.com/ocular+adnexa] +synonym: "appendages of the eye" RELATED PLURAL [http://medical-dictionary.thefreedictionary.com/ocular+adnexa] +synonym: "eye adnexa" RELATED [] +synonym: "set of accessory visual structures" RELATED [FMA:76554] +synonym: "structurae oculi accessoriae" RELATED LATIN [http://en.wikipedia.org/wiki/Accessory_visual_structures] +xref: FMA:76554 +xref: http://en.wikipedia.org/wiki/Accessory_visual_structures +xref: http://linkedlifedata.com/resource/umls/id/C0229243 +xref: http://www.snomedbrowser.com/Codes/Details/120612006 +xref: NCIT:C32574 +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0004088 ! orbital region + +[Term] +id: UBERON:0035640 +name: middle vesical artery +def: "The middle vesical artery, usually a branch of the superior vesical artery, is distributed to the fundus of the bladder and the seminal vesicles." [http://en.wikipedia.org/wiki/Middle_vesical_artery] +comment: This artery is not usually described in modern anatomy textbooks. Instead, it is described that the superior vesical artery may exist as multiple vessels that arise from a common origin +xref: http://en.wikipedia.org/wiki/Middle_vesical_artery +is_a: UBERON:0001311 ! inferior vesical artery +relationship: supplies UBERON:0000998 ! seminal vesicle + +[Term] +id: UBERON:0035642 +name: laryngeal nerve +def: "Any nerve that innervates the larynx." [UBERON:cjm] +xref: http://www.snomedbrowser.com/Codes/Details/307013006 +xref: MESH:A08.800.050.050.925.450 +is_a: UBERON:0001021 ! nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: innervates UBERON:0001737 ! larynx +relationship: innervates UBERON:0001737 ! larynx + +[Term] +id: UBERON:0035646 +name: anterior superior alveolar nerve +def: "The anterior superior alveolar branch (anterior superior dental branch), of considerable size, is given off from the maxillary nerve just before its exit from the infraorbital foramen; it descends in a canal in the anterior wall of the maxillary sinus, and divides into branches which supply the incisor and canine teeth. It communicates with the middle superior alveolar branch, and gives off a nasal branch, which passes through a minute canal in the lateral wall of the inferior meatus, and supplies the mucous membrane of the anterior part of the inferior meatus and the floor of the nasal cavity, communicating with the nasal branches from the sphenopalatine ganglion." [http://en.wikipedia.org/wiki/Anterior_superior_alveolar_nerve] +synonym: "anterior superior alveolar branch" RELATED [http://en.wikipedia.org/wiki/Anterior_superior_alveolar_nerve] +synonym: "anterior superior dental nerve" EXACT [FMA:52935] +xref: FMA:52935 +xref: http://en.wikipedia.org/wiki/Anterior_superior_alveolar_nerve +xref: http://www.snomedbrowser.com/Codes/Details/280241004 +is_a: UBERON:0018398 {source="FMA"} ! superior alveolar nerve + +[Term] +id: UBERON:0035647 +name: posterior auricular nerve +def: "A branch of the facial nerve that innervates the posterior auricular and intrinsic muscles of the auricle and, through its occipital branch, innervates the occipital belly of the occipitofrontal muscle." [http://dictionary.reference.com/browse/posterior+auricular+nerve] +synonym: "auricularis posterior branch of facial nerve" EXACT [FMA:53278] +synonym: "posterior auricular branch of the facial" RELATED [http://en.wikipedia.org/wiki/Posterior_auricular_nerve] +xref: FMA:53278 +xref: http://en.wikipedia.org/wiki/Posterior_auricular_nerve +xref: http://www.snomedbrowser.com/Codes/Details/280277006 +is_a: UBERON:0035648 ! nerve innervating pinna +relationship: branching_part_of UBERON:0003725 {source="FMA", source="Wikipedia"} ! cervical nerve plexus +relationship: innervates UBERON:0010946 ! occipitofrontalis muscle +relationship: innervates UBERON:0018110 ! posterior auricular muscle +relationship: part_of UBERON:0003725 ! cervical nerve plexus + +[Term] +id: UBERON:0035648 +name: nerve innervating pinna +def: "Any nerve that innervates the pinna." [UBERON:cjm] +synonym: "auricular nerve" EXACT [MA:0001232] +xref: EMAPA:36513 +xref: MA:0001232 +is_a: UBERON:0011779 ! nerve of head region +intersection_of: UBERON:0001021 ! nerve +intersection_of: innervates UBERON:0001757 ! pinna +relationship: branching_part_of UBERON:0001647 {source="FMA"} ! facial nerve +relationship: innervates UBERON:0001757 ! pinna +relationship: part_of UBERON:0001647 ! facial nerve + +[Term] +id: UBERON:0035649 +name: nerve of penis +def: "Any nerve that innervates the penis." [UBERON:cjm] +synonym: "penile nerve" EXACT [] +synonym: "penis nerve" EXACT [] +xref: EMAPA:35057 +is_a: UBERON:0001021 ! nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: innervates UBERON:0000989 ! penis +relationship: innervates UBERON:0000989 ! penis + +[Term] +id: UBERON:0035650 +name: nerve of clitoris +def: "Any nerve that innervates the clitoris." [UBERON:cjm] +synonym: "clitoral nerve" EXACT [] +synonym: "clitoris nerve" EXACT [] +xref: EMAPA:35044 +is_a: UBERON:0001021 ! nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: innervates UBERON:0002411 ! clitoris +relationship: innervates UBERON:0002411 ! clitoris + +[Term] +id: UBERON:0035651 +name: glans +xref: http://en.wikipedia.org/wiki/Glans +is_a: UBERON:0000063 ! organ subunit +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +union_of: UBERON:0001299 ! glans penis +union_of: UBERON:0006653 ! glans clitoris +relationship: develops_from UBERON:0013238 ! future glans +relationship: part_of UBERON:0003133 ! reproductive organ + +[Term] +id: UBERON:0035652 +name: fibular nerve +def: "Any nerve that innervates the fibularis. Includes the common fibular nerve, and its branches" [UBERON:cjm] +subset: grouping_class +synonym: "peroneal nerve" EXACT [] +xref: EMAPA:36511 +xref: MESH:A08.800.800.720.450.760.640 +is_a: UBERON:0001021 ! nerve +intersection_of: UBERON:0001021 ! nerve +intersection_of: innervates UBERON:0009132 ! peroneus +relationship: innervates UBERON:0009132 ! peroneus + +[Term] +id: UBERON:0035655 +name: paraumbilical vein +def: "The small superficial veins that arise from the cutaneous veins, and run from the umbilicus along the round ligament of the liver; these terminate as accessory portal veins in the liver." [http://www.ncbi.nlm.nih.gov/pubmed/7400038, https://github.com/obophenotype/uberon/issues/1134, ISBN:0683400088, MGI:cs] +synonym: "para-umbilical vein" RELATED [http://en.wikipedia.org/wiki/Paraumbilical_vein] +synonym: "para-umbilical veins" RELATED PLURAL [FMA:71591] +synonym: "para-umbilical veins set" RELATED PLURAL [FMA:71591] +synonym: "paraumbilical vasculature" RELATED [] +synonym: "parumbilical vein" RELATED [http://en.wikipedia.org/wiki/Paraumbilical_vein] +synonym: "parumbilical veins" RELATED PLURAL [http://en.wikipedia.org/wiki/Paraumbilical_vein] +synonym: "vein of Sappey" RELATED [FMA:71591] +synonym: "veins of Sappey" RELATED PLURAL [FMA:71591] +synonym: "venae paraumbilicales" EXACT LATIN [FMA:TA] +xref: EMAPA:37228 {source="MA:th"} +xref: FMA:71591 +xref: http://www.snomedbrowser.com/Codes/Details/286094009 +xref: Paraumbilical:vein +is_a: UBERON:0013126 ! vein of abdomen + +[Term] +id: UBERON:0035659 +name: deep facial vein +def: "The anterior facial vein receives a branch of considerable size, the deep facial vein, from the pterygoid venous plexus." [http://en.wikipedia.org/wiki/Deep_facial_vein] +xref: FMA:50916 +xref: http://en.wikipedia.org/wiki/Deep_facial_vein +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0003502 ! neck blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +relationship: part_of UBERON:0001653 ! facial vein +relationship: tributary_of UBERON:0001653 ! facial vein + +[Term] +id: UBERON:0035662 +name: parotid vein +synonym: "anterior parotid vein" EXACT [FMA:50919] +synonym: "parotid branch of facial vein" EXACT [FMA:50919] +xref: FMA:50919 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0003502 ! neck blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0001831 ! parotid gland +relationship: drains UBERON:0001831 ! parotid gland +relationship: part_of UBERON:0001653 ! facial vein +relationship: tributary_of UBERON:0001653 ! facial vein + +[Term] +id: UBERON:0035675 +name: anterior facial vein +def: "A vein that represents a continuation of the angular vein and lies behind the facial artery." [ncithesaurus:Anterior_Facial_Vein, NCITID__Anterior_Facial_Vein] +xref: EMAPA:37133 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C1711319 +xref: MA:0002116 +xref: NCIT:C52687 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0003502 ! neck blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +relationship: part_of UBERON:0001653 ! facial vein +relationship: tributary_of UBERON:0001653 ! facial vein + +[Term] +id: UBERON:0035676 +name: secondary yolk sac cavity +synonym: "cavity of definitive yolk sac" EXACT [FMA:305890] +synonym: "cavity of secondary yolk sac" EXACT [FMA:305890] +synonym: "definitive yolk sac cavity" EXACT [FMA:305890] +synonym: "secondary yolk sac cavity" EXACT [EHDAA2:0001821] +synonym: "secondary yolk sac cavity" EXACT [FMA:305890] +synonym: "secondary yolk sac space" EXACT [FMA:305890] +xref: EHDAA2:0001821 +xref: FMA:305890 +is_a: UBERON:0005251 ! yolk sac cavity +is_a: UBERON:0009743 ! visceral yolk sac cavity +intersection_of: UBERON:0002553 ! anatomical cavity +intersection_of: luminal_space_of UBERON:0008852 ! visceral yolk sac + +[Term] +id: UBERON:0035677 +name: primary yolk sac cavity +synonym: "cavity of primary yolk sac" EXACT [FMA:305888] +synonym: "primary yolk sac cavity" EXACT [FMA:305888] +synonym: "primary yolk sac space" EXACT [FMA:305888] +xref: EHDAA2:0001503 +xref: EMAPA:36039 +xref: FMA:305888 +is_a: UBERON:0005251 ! yolk sac cavity +intersection_of: UBERON:0002553 ! anatomical cavity +intersection_of: luminal_space_of UBERON:0008853 ! parietal yolk sac +relationship: develops_from UBERON:0000090 {source="EHDAA2"} ! blastocele +relationship: luminal_space_of UBERON:0008853 ! parietal yolk sac +relationship: part_of UBERON:0008853 ! parietal yolk sac + +[Term] +id: UBERON:0035753 +name: capillary plexus +def: "A network of capillaries." [UBERON:cjm] +synonym: "capillary network" EXACT [FMA:45633] +xref: FMA:45633 +is_a: UBERON:0004537 ! blood vasculature +relationship: composed_primarily_of UBERON:0001982 ! capillary + +[Term] +id: UBERON:0035754 +name: pulmonary capillary plexus +synonym: "capillary network of lung" EXACT [FMA:264928] +synonym: "pulmonary capillary network" EXACT [FMA:264928] +xref: FMA:264928 +is_a: UBERON:0035753 ! capillary plexus +intersection_of: UBERON:0035753 ! capillary plexus +intersection_of: part_of UBERON:0008886 ! pulmonary vascular system +relationship: part_of UBERON:0008886 ! pulmonary vascular system + +[Term] +id: UBERON:0035755 +name: systemic capillary plexus +synonym: "systemic capillary network" EXACT [FMA:264934] +xref: FMA:264934 +is_a: UBERON:0035753 ! capillary plexus +intersection_of: UBERON:0035753 ! capillary plexus +intersection_of: part_of UBERON:0004581 ! systemic venous system +relationship: part_of UBERON:0004581 ! systemic venous system + +[Term] +id: UBERON:0035756 +name: capillary network of liver +synonym: "capillary plexus of liver" EXACT [FMA:280884] +synonym: "hepatic capillary network" EXACT [FMA:280884] +synonym: "hepatic capillary plexus" EXACT [] +xref: EHDAA2:0004525 +xref: FMA:280884 +is_a: UBERON:0006877 ! vasculature of liver +is_a: UBERON:0035755 ! systemic capillary plexus +intersection_of: UBERON:0035753 ! capillary plexus +intersection_of: part_of UBERON:0002107 ! liver + +[Term] +id: UBERON:0035757 +name: embryonic capillary plexus +synonym: "embryonic venous capillary plexus" EXACT [EHDAA2:0004540] +xref: EHDAA2:0004540 +is_a: UBERON:0035753 ! capillary plexus +intersection_of: UBERON:0035753 ! capillary plexus +intersection_of: part_of UBERON:0000922 ! embryo +relationship: part_of UBERON:0000922 ! embryo + +[Term] +id: UBERON:0035758 +name: peritubular capillary plexus of kidney +synonym: "peritubular capillary network of kidney" EXACT [FMA:272218] +synonym: "peritubular capillary plexus" EXACT [FMA:272218] +xref: FMA:272218 +xref: http://www.snomedbrowser.com/Codes/Details/36447007 +is_a: UBERON:0035762 ! capillary network of kidney +intersection_of: UBERON:0035753 ! capillary plexus +intersection_of: composed_primarily_of UBERON:0005272 ! peritubular capillary +relationship: composed_primarily_of UBERON:0005272 ! peritubular capillary + +[Term] +id: UBERON:0035762 +name: capillary network of kidney +synonym: "capillary plexus of kidney" EXACT [FMA:280922] +xref: FMA:280922 +is_a: UBERON:0006544 ! kidney vasculature +is_a: UBERON:0035753 ! capillary plexus +intersection_of: UBERON:0035753 ! capillary plexus +intersection_of: part_of UBERON:0002113 ! kidney + +[Term] +id: UBERON:0035763 +name: cavity of cardiac chamber +synonym: "cardiac chamber cavity" EXACT [FMA:9464] +synonym: "heart cavity" EXACT [FMA:9464] +synonym: "heart lumen" EXACT [EHDAA2:0004181] +xref: EHDAA2:0004181 +xref: FMA:9464 +is_a: UBERON:0002553 ! anatomical cavity +intersection_of: UBERON:0002553 ! anatomical cavity +intersection_of: luminal_space_of UBERON:0004151 ! cardiac chamber +relationship: luminal_space_of UBERON:0004151 ! cardiac chamber +relationship: part_of UBERON:0004151 ! cardiac chamber +relationship: surrounded_by UBERON:0002165 {source="FMA"} ! endocardium + +[Term] +id: UBERON:0035764 +name: pulmonary lymph node +synonym: "intrapulmonary lymph node" EXACT [FMA:5968] +synonym: "pulmonary node" EXACT [FMA:5968] +xref: FMA:5968 +is_a: UBERON:0000029 ! lymph node +intersection_of: UBERON:0000029 ! lymph node +intersection_of: part_of UBERON:0008886 ! pulmonary vascular system +relationship: part_of UBERON:0008886 ! pulmonary vascular system + +[Term] +id: UBERON:0035765 +name: subsegmental lymph node +def: "The lymph nodes around the subsegmental bronchi." [ncithesaurus:Subsegmental_Lymph_Node, NCITID__Subsegmental_Lymph_Node] +xref: FMA:276861 +xref: http://linkedlifedata.com/resource/umls/id/C1515031 +xref: NCIT:C28745 +is_a: UBERON:0035764 {source="FMA"} ! pulmonary lymph node + +[Term] +id: UBERON:0035766 +name: median lobe of prostate +def: "The upper, smaller part of the prostate between the ejaculatory ducts and the urethra." [ncithesaurus:Middle_Lobe_of_the_Prostate] +synonym: "Albarran's gland" EXACT [FMA:45701] +synonym: "cranial part of prostate" EXACT [FMA:45701] +synonym: "lobus medius prostatae" EXACT LATIN [FMA:TA] +synonym: "middle lobe of prostate" EXACT [FMA:45701] +synonym: "pars proximalis (prostata)" EXACT [FMA:45701] +synonym: "pars proximalis prostatae" EXACT LATIN [FMA:TA] +synonym: "proximal part of prostate" EXACT [FMA:45701] +synonym: "proximal part of prostate gland" EXACT [FMA:45701] +xref: FMA:45701 +xref: http://www.snomedbrowser.com/Codes/Details/245466000 +xref: NCIT:C13094 +is_a: UBERON:0001328 {source="FMA"} ! lobe of prostate + +[Term] +id: UBERON:0035767 +name: intrapulmonary bronchus +xref: FMA:223208 +xref: http://linkedlifedata.com/resource/umls/id/C1512970 +xref: NCIT:C12930 +is_a: UBERON:0002185 ! bronchus +intersection_of: UBERON:0002185 ! bronchus +intersection_of: part_of UBERON:0002048 ! lung +relationship: part_of UBERON:0002048 ! lung + +[Term] +id: UBERON:0035768 +name: coccygeal nerve plexus +def: "The coccygeal plexus is a plexus of nerves near the coccyx bone." [http://en.wikipedia.org/wiki/Coccygeal_plexus] +synonym: "coccygeal plexus" EXACT [FMA:45356] +synonym: "plexus coccygeus" EXACT LATIN [FMA:TA] +synonym: "plexus coccygien@fr" EXACT [FMA:45356] +xref: Coccygeal:plexus +xref: FMA:45356 +xref: http://www.snomedbrowser.com/Codes/Details/280355009 +is_a: UBERON:0001813 {source="FMA"} ! spinal nerve plexus + +[Term] +id: UBERON:0035769 +name: mesenteric ganglion +xref: http://www.snomedbrowser.com/Codes/Details/314754005 +is_a: UBERON:0003964 ! prevertebral ganglion +intersection_of: UBERON:0003964 ! prevertebral ganglion +intersection_of: part_of UBERON:0035771 ! mesenteric plexus +relationship: part_of UBERON:0035771 ! mesenteric plexus + +[Term] +id: UBERON:0035770 +name: inferior mesenteric nerve plexus +def: "The inferior mesenteric plexus is derived chiefly from the aortic plexus. It surrounds the inferior mesenteric artery, and divides into a number of secondary plexuses, which are distributed to all the parts supplied by the artery, viz. , the left colic and sigmoid plexuses, which supply the descending and sigmoid parts of the colon; and the superior hemorrhoidal plexus, which supplies the rectum and joins in the pelvis with branches from the pelvic plexuses." [http://en.wikipedia.org/wiki/Inferior_mesenteric_plexus] +synonym: "inferior mesenteric plexus" EXACT [FMA:6641] +synonym: "plexus mesentericus inferior" EXACT LATIN [FMA:TA] +synonym: "plexus nervosus mesentericus inferior" EXACT LATIN [FMA:TA] +xref: FMA:6641 +xref: http://en.wikipedia.org/wiki/Inferior_mesenteric_plexus +xref: http://www.snomedbrowser.com/Codes/Details/362495005 +is_a: UBERON:0035771 ! mesenteric plexus +intersection_of: UBERON:0035771 ! mesenteric plexus +intersection_of: extends_fibers_into UBERON:0035772 ! aortic plexus +intersection_of: innervates UBERON:0001052 ! rectum +intersection_of: innervates UBERON:0001158 ! descending colon +intersection_of: innervates UBERON:0001159 ! sigmoid colon +relationship: extends_fibers_into UBERON:0035772 ! aortic plexus +relationship: innervates UBERON:0001052 ! rectum +relationship: innervates UBERON:0001158 ! descending colon +relationship: innervates UBERON:0001159 ! sigmoid colon + +[Term] +id: UBERON:0035771 +name: mesenteric plexus +xref: http://www.snomedbrowser.com/Codes/Details/314752009 +is_a: UBERON:0001816 ! autonomic nerve plexus + +[Term] +id: UBERON:0035772 +name: aortic plexus +xref: FMA:80133 +is_a: UBERON:0001816 {source="FMA"} ! autonomic nerve plexus + +[Term] +id: UBERON:0035773 +name: abdominal nerve plexus +def: "The abdominal aortic plexus (aortic plexus) is formed by branches derived, on either side, from the celiac plexus and ganglia, and receives filaments from some of the lumbar ganglia. It is situated upon the sides and front of the aorta, between the origins of the superior and inferior mesenteric arteries. From this plexus arise part of the spermatic, the inferior mesenteric, and the hypogastric plexuses; it also distributes filaments to the inferior vena cava." [http://en.wikipedia.org/wiki/Abdominal_aortic_plexus] +synonym: "abdominal aortic nerve plexus" EXACT [FMA:6640] +synonym: "abdominal aortic plexus" EXACT [FMA:6640] +synonym: "plexus aorticus abdominalis" EXACT LATIN [FMA:TA] +synonym: "plexus aortique abdominal@fr" EXACT [FMA:6640] +synonym: "plexus nervosus aorticus abdominalis" EXACT LATIN [FMA:TA] +synonym: "preaortic nerve plexus" EXACT [FMA:6640] +xref: FMA:6640 +xref: http://en.wikipedia.org/wiki/Abdominal_aortic_plexus +xref: http://www.snomedbrowser.com/Codes/Details/362491001 +is_a: UBERON:0035772 ! aortic plexus + +[Term] +id: UBERON:0035774 +name: thoracic aortic plexus +def: "The thoracic aortic plexus is a sympathetic plexus in the region of the thoracic aorta." [http://en.wikipedia.org/wiki/Thoracic_aortic_plexus] +synonym: "plexus aorticus thoracicus" EXACT LATIN [FMA:TA] +synonym: "plexus aortique thoracique@fr" EXACT [FMA:77574] +synonym: "plexus nervosus aorticus thoracicus" EXACT LATIN [FMA:TA] +synonym: "thoracic aortic nerve plexus" EXACT [FMA:77574] +xref: FMA:77574 +xref: http://en.wikipedia.org/wiki/Thoracic_aortic_plexus +is_a: UBERON:0035772 ! aortic plexus + +[Term] +id: UBERON:0035775 +name: submandibular region +def: "The region between the mandible and the hyoid bone that contains the submandibular and sublingual glands, suprahyoid muscles, submandibular ganglion, and lingual artery." [https://github.com/obophenotype/uberon/issues/1137] +synonym: "digastric triangle" NARROW [FMA:57779] +synonym: "digastric triangle" NARROW [http://en.wikipedia.org/wiki/Submandibular_triangle] +synonym: "submandibular triangle" NARROW [FMA:57779] +synonym: "submaxillary triangle" NARROW [http://en.wikipedia.org/wiki/Submandibular_triangle] +synonym: "submaxillary triangle" NARROW [FMA:57779] +synonym: "trigonum submandibulare" NARROW LATIN [FMA:TA] +xref: FMA:57779 +xref: Submandibular:triangle +is_a: UBERON:0000475 ! organism subdivision +relationship: part_of UBERON:0000974 ! neck + +[Term] +id: UBERON:0035776 +name: accessory ciliary ganglion +def: "A parasympathetic ganglion located on the short ciliary nerve differentiated from the main ciliary ganglion by virtue of the fact that it had no root derived directly from the inferior trunk of the oculomotor nerve and it never attaches to this nerve" [http://www.ncbi.nlm.nih.gov/pubmed/2802184] +is_a: UBERON:0035783 ! ganglion of ciliary nerve +relationship: part_of UBERON:0035639 {source="http://orcid.org/0000-0001-9114-8737"} ! ocular adnexa + +[Term] +id: UBERON:0035783 +name: ganglion of ciliary nerve +def: "Any parasympathetic ganglion that extends fibers into the short ciliary nerve. Includes both the main and acccessory ciliary ganglia" [UBERON:cjm] +is_a: UBERON:0001808 ! parasympathetic ganglion +intersection_of: UBERON:0001808 ! parasympathetic ganglion +intersection_of: extends_fibers_into UBERON:0022302 ! short ciliary nerve +union_of: UBERON:0002058 ! main ciliary ganglion +union_of: UBERON:0035776 ! accessory ciliary ganglion +relationship: extends_fibers_into UBERON:0022302 ! short ciliary nerve +relationship: part_of UBERON:0004088 ! orbital region + +[Term] +id: UBERON:0035784 +name: seminal clot +def: "A portion of semen in a coagulated state." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/18482984] +synonym: "seminal coagulum" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/18482984] +is_a: UBERON:0001968 ! semen + +[Term] +id: UBERON:0035785 +name: telencephalic song nucleus HVC +def: "A nucleus in the brain of songbirds located in the caudal nidopallium, projecting to the song motor pathway via the robust nucleus of the arcopallium and to the Anterior Forebrain Pathway via the basal ganglia nucleus Area X." [GOC:mr, http://en.wikipedia.org/wiki/HVC_(avian_brain_region), https://github.com/geneontology/go-ontology/issues/12057] +synonym: "higher vocal centre" RELATED DEPRECATED [BTO:0003390, http://www.ncbi.nlm.nih.gov/pubmed/15313771] +synonym: "HVC" BROAD ABBREVIATION [http://en.wikipedia.org/wiki/HVC_(avian_brain_region)] +synonym: "HVc" RELATED DEPRECATED [http://www.ncbi.nlm.nih.gov/pubmed/15313771] +synonym: "HVC (avian brain region)" EXACT [http://en.wikipedia.org/wiki/HVC_(avian_brain_region)] +synonym: "hyperstriatum ventrale" RELATED DEPRECATED [BTO:0003390] +synonym: "pars caudale" RELATED [BTO:0003390] +synonym: "pars caudalis (HVc)" EXACT DEPRECATED [http://en.wikipedia.org/wiki/HVC_(avian_brain_region)] +synonym: "telencephalic song nucleus HVC" EXACT [BTO:0003390] +xref: BTO:0003390 +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0007334 {source="Wikipedia"} ! nidopallium + +[Term] +id: UBERON:0035786 +name: layer of CA1 field +subset: non_informative +xref: FMA:277844 +is_a: UBERON:0002305 ! layer of hippocampus +intersection_of: UBERON:0002305 ! layer of hippocampus +intersection_of: part_of UBERON:0003881 ! CA1 field of hippocampus +relationship: part_of UBERON:0003881 ! CA1 field of hippocampus + +[Term] +id: UBERON:0035787 +name: layer of CA2 field +subset: non_informative +xref: FMA:277846 +is_a: UBERON:0002305 ! layer of hippocampus +intersection_of: UBERON:0002305 ! layer of hippocampus +intersection_of: part_of UBERON:0003882 ! CA2 field of hippocampus +relationship: part_of UBERON:0003882 ! CA2 field of hippocampus + +[Term] +id: UBERON:0035788 +name: layer of CA3 field +subset: non_informative +xref: FMA:277848 +is_a: UBERON:0002305 ! layer of hippocampus +intersection_of: UBERON:0002305 ! layer of hippocampus +intersection_of: part_of UBERON:0003883 ! CA3 field of hippocampus +relationship: part_of UBERON:0003883 ! CA3 field of hippocampus + +[Term] +id: UBERON:0035802 +name: alveus of CA2 field +def: "Part of alveus lying within hippocampal sector CA2" [UBERON:cjm] +xref: FMA:277876 +is_a: UBERON:0035787 ! layer of CA2 field +intersection_of: UBERON:0035787 ! layer of CA2 field +intersection_of: part_of UBERON:0007639 ! hippocampus alveus +relationship: part_of UBERON:0007639 ! hippocampus alveus + +[Term] +id: UBERON:0035803 +name: extrapyramidal tract system +def: "A neural network located in the brain that is part of the motor system involved in the coordination of movement that is distinct from the pyramidal tract." [http://en.wikipedia.org/wiki/Extrapyramidal_system] +synonym: "eps" RELATED ABBREVIATION [MBA:1000] +synonym: "extra-pyramidal tract" RELATED [http://en.wikipedia.org/wiki/Extrapyramidal_system] +synonym: "extrapyramidal fibre" RELATED [http://en.wikipedia.org/wiki/Extrapyramidal_system] +synonym: "extrapyramidal motor system" RELATED [http://en.wikipedia.org/wiki/Extrapyramidal_system] +synonym: "extrapyramidal pathway" RELATED [NeuroNames:2070] +synonym: "extrapyramidal system" RELATED [NeuroNames:2070] +synonym: "extrapyramidal tracts" RELATED [http://en.wikipedia.org/wiki/Extrapyramidal_system] +synonym: "extrapyramindal system" RELATED [http://en.wikipedia.org/wiki/Extrapyramidal_system] +xref: Extrapyramidal:system +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2070 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3015 +xref: http://www.snomedbrowser.com/Codes/Details/362288003 +xref: http://www.snomedbrowser.com/Codes/Details/362400005 +xref: MBA:1000 +xref: MESH:A08.186.854.253 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +relationship: part_of UBERON:0025525 ! motor system + +[Term] +id: UBERON:0035804 +name: future mouth +def: "The primordial mouth region of the developing head." [MP:0003119] +synonym: "primitive mouth" EXACT [FMA:293105] +synonym: "primordial mouth" EXACT [] +xref: FMA:293105 +is_a: UBERON:0013522 ! subdivision of tube +relationship: has_part UBERON:0000925 ! endoderm +relationship: has_part UBERON:0000930 ! stomodeum +relationship: part_of UBERON:0007026 ! presumptive gut + +[Term] +id: UBERON:0035805 +name: muscle layer of sigmoid colon +def: "A muscle layer that is part of the sigmoid colon" [https://github.com/obophenotype/uberon/issues/1162] +synonym: "muscularis externa of sigmoid colon" EXACT [FMA:15028] +synonym: "muscularis propria of sigmoid colon" EXACT [] +synonym: "sigmoid colon muscularis propria" EXACT [] +synonym: "sigmoideum muscularis" RELATED [] +synonym: "tunica muscularis colon sigmoideum" RELATED [] +xref: FMA:15028 +is_a: UBERON:0012489 ! muscle layer of colon +intersection_of: UBERON:0006660 ! muscular coat +intersection_of: part_of UBERON:0001159 ! sigmoid colon +relationship: part_of UBERON:0001159 ! sigmoid colon + +[Term] +id: UBERON:0035806 +name: Hensen stripe +def: "The dark, nonstriated, V-shaped band (ridge) found on the underside of the tectorial membrane in the basal region of the cochlea, from which fine gelatinous trabeculae extend to fix the TM to the border cells, i.e. cells directly adjacent to the inner phalangeal cells." [MGI:anna] +synonym: "Hensen's stripe" EXACT [MGI:anna] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005764 {source="cjm"} ! acellular membrane +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: adjacent_to UBERON:0002233 ! tectorial membrane of cochlea +relationship: part_of UBERON:0001855 {source="cjm"} ! cochlear duct of membranous labyrinth + +[Term] +id: UBERON:0035807 +name: area X of basal ganglion +def: "A nucleus in the basal ganglion of songbirds." [GOC:mr, http://www.ncbi.nlm.nih.gov/pubmed/18398825, https://github.com/geneontology/go-ontology/issues/12142, PMID15116398] +synonym: "area X" BROAD [] +is_a: UBERON:0002308 ! nucleus of brain +relationship: part_of UBERON:0002420 ! basal ganglion + +[Term] +id: UBERON:0035808 +name: robust nucleus of arcopallium +def: "A specialized nucleus within the intermediate archistriatum of songbirds, required for and active during the production of learned song." [BTO:0003366, http://en.wikipedia.org/wiki/Arcopallium] +synonym: "RA" RELATED [BTO:0003366] +synonym: "robust nucleus of the arcopallium" RELATED DEPRECATED [BTO:0003366, http://en.wikipedia.org/wiki/Arcopallium] +synonym: "telencephalic song nucleus RA" RELATED [BTO:0003366] +xref: BTO:0003366 +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0007350 {source="BTO"} ! arcopallium + +[Term] +id: UBERON:0035809 +name: serous cavity +xref: FMA:12241 +xref: http://www.snomedbrowser.com/Codes/Details/304404008 +is_a: UBERON:0002553 ! anatomical cavity +intersection_of: UBERON:0002553 ! anatomical cavity +intersection_of: luminal_space_of UBERON:0005906 ! serous sac +relationship: luminal_space_of UBERON:0005906 ! serous sac +relationship: part_of UBERON:0005906 ! serous sac + +[Term] +id: UBERON:0035814 +name: pericardial fat +def: "The sum of epicardial and paracardial fat deposits." [https://doi.org/10.5935/abc.20130138] +xref: http://www.snomedbrowser.com/Codes/Details/42267001 +xref: ZFA:0005765 +is_a: UBERON:0035818 ! visceral fat +intersection_of: UBERON:0001013 ! adipose tissue +intersection_of: surrounds UBERON:0000948 ! heart +relationship: surrounds UBERON:0000948 ! heart + +[Term] +id: UBERON:0035815 +name: paracardial fat +def: "Fat deposits in the mediastinum outside the parietal pericardium ." [https://doi.org/10.5935/abc.20130138] +synonym: "intrathoracic fat" EXACT [https://doi.org/10.5935/abc.20130138] +is_a: UBERON:0035814 ! pericardial fat +intersection_of: UBERON:0001013 ! adipose tissue +intersection_of: adjacent_to UBERON:0002408 ! parietal serous pericardium +intersection_of: surrounds UBERON:0000948 ! heart +relationship: adjacent_to UBERON:0002408 ! parietal serous pericardium + +[Term] +id: UBERON:0035818 +name: visceral fat +def: "Any fat deposit surrounding a visceral organ." [UBERON:cjm] +is_a: UBERON:0001013 ! adipose tissue +intersection_of: UBERON:0001013 ! adipose tissue +intersection_of: surrounds UBERON:0000062 ! organ +relationship: surrounds UBERON:0000062 ! organ + +[Term] +id: UBERON:0035819 +name: abdominopelvic cavity +def: "The part of the ventral body cavity that is within the abdominal segment of the trunk, which encompasses the abdomen proper plus pelvic cavity." [UBERON:cjm] +synonym: "cavitas abdominis et pelvis" EXACT LATIN [FMA:TA] +xref: Abdominopelvic:cavity +xref: FMA:12267 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0002417 ! abdominal segment of trunk +intersection_of: part_of UBERON:0002323 ! coelemic cavity lumen +relationship: luminal_space_of UBERON:0002417 ! abdominal segment of trunk +relationship: part_of UBERON:0002323 ! coelemic cavity lumen +relationship: part_of UBERON:0002417 ! abdominal segment of trunk + +[Term] +id: UBERON:0035820 +name: peritoneal sac +def: "A serous sac that is the aggregate of the peritoneum and the peritoneal cavity, located in the abdominal cavity." [https://github.com/obophenotype/uberon/issues/86] +synonym: "peritoneal component" RELATED [EMAPA:16137] +xref: EMAPA:16137 +xref: FMA:9908 +xref: MA:0000054 +is_a: UBERON:0002075 ! viscus +is_a: UBERON:0005906 ! serous sac +relationship: has_part UBERON:0001179 ! peritoneal cavity +relationship: has_part UBERON:0002358 ! peritoneum +relationship: located_in UBERON:0003684 ! abdominal cavity + +[Term] +id: UBERON:0035825 +name: left adrenal gland cortex +def: "the thick outer layer of the adrenal gland that is in the left side of the abdomen" [https://github.com/obophenotype/uberon/issues/1170] +synonym: "cortex of left adrenal gland" EXACT [FMA:69089] +synonym: "cortex of left suprarenal gland" EXACT [FMA:69089] +synonym: "left adrenal cortex" EXACT [FMA:69089] +xref: FMA:69089 +is_a: UBERON:0001235 {is_inferred="true"} ! adrenal cortex +intersection_of: UBERON:0001851 ! cortex +intersection_of: part_of UBERON:0001234 ! left adrenal gland +relationship: part_of UBERON:0001234 ! left adrenal gland + +[Term] +id: UBERON:0035826 +name: left adrenal gland medulla +def: "the adrenal gland medulla that is in the left side of the abdomen" [https://github.com/obophenotype/uberon/issues/1170] +synonym: "left adrenal medulla" EXACT [FMA:69092] +synonym: "medulla of left adrenal gland" EXACT [FMA:69092] +synonym: "medulla of left suprarenal gland" EXACT [FMA:69092] +xref: FMA:69092 +is_a: UBERON:0001236 {is_inferred="true"} ! adrenal medulla +intersection_of: UBERON:0000958 ! medulla of organ +intersection_of: part_of UBERON:0001234 ! left adrenal gland +relationship: part_of UBERON:0001234 ! left adrenal gland + +[Term] +id: UBERON:0035827 +name: right adrenal gland cortex +def: "the thick outer layer of the adrenal gland that is in the right side of the abdomen" [https://github.com/obophenotype/uberon/issues/1170] +synonym: "cortex of right adrenal gland" EXACT [FMA:69088] +synonym: "cortex of right suprarenal gland" EXACT [FMA:69088] +synonym: "right adrenal cortex" EXACT [FMA:69088] +xref: FMA:69088 +is_a: UBERON:0001235 {is_inferred="true"} ! adrenal cortex +intersection_of: UBERON:0001851 ! cortex +intersection_of: part_of UBERON:0001233 ! right adrenal gland +relationship: part_of UBERON:0001233 ! right adrenal gland + +[Term] +id: UBERON:0035828 +name: right adrenal gland medulla +def: "the adrenal gland medulla that is in the right side of the abdomen" [https://github.com/obophenotype/uberon/issues/1170] +synonym: "medulla of right adrenal gland" EXACT [FMA:69091] +synonym: "medulla of right suprarenal gland" EXACT [FMA:69091] +synonym: "right adrenal medulla" EXACT [FMA:69091] +xref: FMA:69091 +is_a: UBERON:0001236 {is_inferred="true"} ! adrenal medulla +intersection_of: UBERON:0000958 ! medulla of organ +intersection_of: part_of UBERON:0001233 ! right adrenal gland +relationship: part_of UBERON:0001233 ! right adrenal gland + +[Term] +id: UBERON:0035829 +name: right gastroepiploic artery +def: "Artery that runs from right to left along the greater curvature of the stomach, between the layers of the greater omentum, anastomosing with the left gastroepiploic branch of the splenic artery." [http://en.wikipedia.org/wiki/Right_gastro-omental_artery] +synonym: "arteria gastro-omentalis dextra" EXACT LATIN [http://en.wikipedia.org/wiki/Right_gastro-omental_artery] +synonym: "arteria gastroepiploica dextra" EXACT LATIN [http://en.wikipedia.org/wiki/Right_gastro-omental_artery] +synonym: "arteria gastroomentalis dextra" EXACT LATIN [http://en.wikipedia.org/wiki/Right_gastro-omental_artery] +synonym: "right gastro-epiploic artery" EXACT [FMA:14781] +synonym: "right gastro-omental artery" EXACT [FMA:14781] +synonym: "right gastroepiploic" RELATED [http://en.wikipedia.org/wiki/Right_gastro-omental_artery] +synonym: "right gastroepiploic artery" RELATED [http://en.wikipedia.org/wiki/Right_gastro-omental_artery] +synonym: "right gastroomental artery" EXACT [FMA:14781] +xref: FMA:14781 +xref: http://en.wikipedia.org/wiki/Right_gastro-omental_artery +xref: http://www.snomedbrowser.com/Codes/Details/244271002 +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0009025 ! gastroepiploic artery +relationship: branching_part_of UBERON:0010132 {source="FMA"} ! gastroduodenal artery +relationship: part_of UBERON:0010132 ! gastroduodenal artery +relationship: supplies UBERON:0002108 {source="FMA"} ! small intestine + +[Term] +id: UBERON:0035830 +name: left gastroepiploic artery +def: "Artery that runs from left to right along the greater curvature of the stomach, between the layers of the greater omentum, and anastomoses with the right gastroepiploic." [http://en.wikipedia.org/wiki/Left_gastro-omental_artery] +synonym: "arteria gastro-omentalis sinistra" EXACT LATIN [http://en.wikipedia.org/wiki/Left_gastro-omental_artery] +synonym: "arteria gastroepiploica sinistra" EXACT LATIN [http://en.wikipedia.org/wiki/Left_gastro-omental_artery] +synonym: "arteria gastroomentalis sinistra" EXACT LATIN [http://en.wikipedia.org/wiki/Left_gastro-omental_artery] +synonym: "left gastro-epiploic artery" EXACT [FMA:14796] +synonym: "left gastro-omental artery" EXACT [FMA:14796] +synonym: "left gastroepiploic artery" RELATED [http://en.wikipedia.org/wiki/Left_gastro-omental_artery] +synonym: "left gastroepiploic branch" RELATED [http://en.wikipedia.org/wiki/Left_gastro-omental_artery] +synonym: "left gastroomental artery" EXACT [FMA:14796] +synonym: "left inferior gastric artery" EXACT [FMA:14796] +xref: FMA:14796 +xref: http://en.wikipedia.org/wiki/Left_gastro-omental_artery +xref: http://www.snomedbrowser.com/Codes/Details/244270001 +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0009025 ! gastroepiploic artery +relationship: branching_part_of UBERON:0001194 {source="FMA"} ! splenic artery +relationship: part_of UBERON:0001194 ! splenic artery + +[Term] +id: UBERON:0035831 +name: costal diaphragm +def: "The domain of the diaphragm that is a thin domed sheet of muscle composed of a radial array of myofibers extending laterally from the ribs and medially to a central tendon." [http://www.ncbi.nlm.nih.gov/pubmed/23586979] +synonym: "costal part of diaphragm" EXACT [FMA:58277] +synonym: "pars costalis diaphragmatis" EXACT LATIN [FMA:TA] +xref: FMA:58277 +xref: http://www.snomedbrowser.com/Codes/Details/368048007 +is_a: UBERON:0000063 ! organ subunit +is_a: UBERON:0015212 ! lateral structure +relationship: attaches_to UBERON:0006670 ! central tendon of diaphragm +relationship: in_lateral_side_of UBERON:0001103 {source="http://www.ncbi.nlm.nih.gov/pubmed/23586979"} ! diaphragm +relationship: part_of UBERON:0001103 {source="http://www.ncbi.nlm.nih.gov/pubmed/23586979"} ! diaphragm + +[Term] +id: UBERON:0035832 +name: caval sphincter +def: "A striated muscle sphincter that is an extension of the diaphragm and surrounds the vena cava." [https://doi.org/10.1242/jeb.056127] +synonym: "vena cava sphincter" EXACT [] +is_a: UBERON:0007522 ! striated muscle sphincter +relationship: composed_primarily_of UBERON:0001134 ! skeletal muscle tissue +relationship: continuous_with UBERON:0014765 ! crus of diaphragm +relationship: innervated_by UBERON:0001884 {laterality="left"} ! phrenic nerve +relationship: present_in_taxon NCBITaxon:9709 +relationship: surrounds UBERON:0004087 ! vena cava + +[Term] +id: UBERON:0035833 +name: lower esophagus muscularis layer +synonym: "lower esophagus muscularis propria" EXACT [] +synonym: "muscle coat of lower esophagus" EXACT [] +is_a: UBERON:0011878 ! muscle layer of esophagus +intersection_of: UBERON:0006660 ! muscular coat +intersection_of: part_of UBERON:0013473 ! lower esophagus +relationship: part_of UBERON:0013473 ! lower esophagus +relationship: seeAlso FMA:63042 + +[Term] +id: UBERON:0035834 +name: lower esophagus mucosa +is_a: UBERON:0002469 ! esophagus mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0013473 ! lower esophagus +relationship: part_of UBERON:0013473 ! lower esophagus +relationship: seeAlso FMA:63008 + +[Term] +id: UBERON:0035835 +name: apical region of left ventricle +def: "Region around the apex of the cardiac left ventricle located at the bottom of the left ventricle inferior to both the mitral and aortic valve." [BGEE:Ann, https://github.com/obophenotype/uberon/issues/1169] +synonym: "apical zone of left ventricle" EXACT [FMA:225374] +xref: FMA:225374 +xref: http://www.snomedbrowser.com/Codes/Details/264843009 +is_a: UBERON:0035837 ! apical region of heart ventricle +intersection_of: UBERON:0035837 ! apical region of heart ventricle +intersection_of: part_of UBERON:0002084 ! heart left ventricle +relationship: part_of UBERON:0002084 ! heart left ventricle + +[Term] +id: UBERON:0035836 +name: apical region of right ventricle +synonym: "apical zone of right ventricle" EXACT [FMA:230605] +xref: FMA:230605 +xref: http://www.snomedbrowser.com/Codes/Details/264913008 +is_a: UBERON:0035837 ! apical region of heart ventricle +intersection_of: UBERON:0035837 ! apical region of heart ventricle +intersection_of: part_of UBERON:0002080 ! heart right ventricle +relationship: part_of UBERON:0002080 ! heart right ventricle + +[Term] +id: UBERON:0035837 +name: apical region of heart ventricle +synonym: "apex of cardiac ventricle" RELATED [MA:0003017] +synonym: "apex of heart ventricle" RELATED [MA:0003017] +synonym: "apical region of cardiac ventricle" EXACT [] +xref: EMAPA:37425 {source="MA:th"} +xref: MA:0003017 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0034944 ! zone of organ +relationship: part_of UBERON:0002082 ! cardiac ventricle + +[Term] +id: UBERON:0035838 +name: esophagogastric junction mucosa +def: "mucosa from the lowest portion of the esophagus, just proximal to the stomach." [https://github.com/obophenotype/uberon/issues/1182] +synonym: "gastro-esophageal junction mucosa" EXACT [EMAPA:27039] +xref: EMAPA:27039 +is_a: UBERON:0000344 ! mucosa +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0007650 ! esophagogastric junction +relationship: part_of UBERON:0007650 ! esophagogastric junction + +[Term] +id: UBERON:0035839 +name: esophagogastric junction submucosa +def: "submucosa from the lowest portion of the esophagus, just proximal to the stomach." [https://github.com/obophenotype/uberon/issues/1182] +synonym: "gastro-esophageal junction submucosa" EXACT [EMAPA:27041] +xref: EMAPA:27041 +is_a: UBERON:0000009 ! submucosa +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0007650 ! esophagogastric junction +relationship: part_of UBERON:0007650 ! esophagogastric junction + +[Term] +id: UBERON:0035840 +name: esophagogastric junction muscularis mucosa +def: "muscularis mucosa from the lowest portion of the esophagus, just proximal to the stomach." [https://github.com/obophenotype/uberon/issues/1182] +synonym: "gastro-esophageal junction muscularis mucosa" EXACT [EMAPA:27051] +xref: EMAPA:27051 +is_a: UBERON:0006676 ! muscularis mucosa +intersection_of: UBERON:0006676 ! muscularis mucosa +intersection_of: part_of UBERON:0007650 ! esophagogastric junction +relationship: part_of UBERON:0007650 ! esophagogastric junction + +[Term] +id: UBERON:0035841 +name: esophagogastric junction muscularis propria +def: "muscularis propria from the lowest portion of the esophagus, just proximal to the stomach." [https://github.com/obophenotype/uberon/issues/1182] +synonym: "gastro-esophageal junction muscularis propria" EXACT [] +is_a: UBERON:0006660 ! muscular coat +intersection_of: UBERON:0006660 ! muscular coat +intersection_of: part_of UBERON:0007650 ! esophagogastric junction +relationship: part_of UBERON:0007650 ! esophagogastric junction + +[Term] +id: UBERON:0035842 +name: extensor digitorum brevis manus +def: "An accessory extensor muscle of the hand found in some humans and other animals." [ISBN:9781439883365] +synonym: "extensor brevis digitorum manus" EXACT [] +synonym: "extensor digitorum brevis manus muscle" EXACT [] +is_a: UBERON:0000311 ! extensor muscle +is_a: UBERON:0001500 ! muscle of manus + +[Term] +id: UBERON:0035843 +name: lower esophagus submucosa +is_a: UBERON:0001972 ! submucosa of esophagus +intersection_of: UBERON:0000009 ! submucosa +intersection_of: part_of UBERON:0013473 ! lower esophagus +relationship: part_of UBERON:0013473 ! lower esophagus +relationship: seeAlso FMA:63038 + +[Term] +id: UBERON:0035844 +name: lower esophagus muscularis mucosa +synonym: "lamina muscularis of lower esophagus" EXACT [] +is_a: UBERON:0004648 ! esophagus muscularis mucosa +intersection_of: UBERON:0006676 ! muscularis mucosa +intersection_of: part_of UBERON:0013473 ! lower esophagus +relationship: part_of UBERON:0013473 ! lower esophagus +relationship: seeAlso FMA:63062 + +[Term] +id: UBERON:0035845 +name: enthesis +def: "The connective tissue between tendon and bone insertion sites, which acts to transmit tensile load from soft tissues to bone. They may be of the dense fibrous connective tissue or fibrocartilage type; fibrous entheses attach directly to bone or periosteum primarily via fibrous tissue, and fibrocartilaginous entheses attach to bone through a transitional layer of fibrocartilage from the fibrous tendon tissue the sites where tendons or ligaments insert into the bone. Recurring stress or inflammatory autoimmune disease can cause inflammation or occasionally fibrosis and calcification of the enthesis." [http://en.wikipedia.org/wiki/Enthesis, http://www.ncbi.nlm.nih.gov/pubmed/25489552, http://www.ncbi.nlm.nih.gov/pubmed/26472070, https://github.com/obophenotype/uberon/issues/1185, MGI:cs] +xref: http://en.wikipedia.org/wiki/Enthesis +xref: http://www.snomedbrowser.com/Codes/Details/410054009 +is_a: UBERON:0002384 ! connective tissue +relationship: attaches_to UBERON:0000043 ! tendon +relationship: part_of UBERON:0002204 ! musculoskeletal system + +[Term] +id: UBERON:0035846 +name: fibrous enthesis +comment: fibrous entheses attach directly to bone or periosteum primarily via fibrous tissue +is_a: UBERON:0035845 ! enthesis +intersection_of: UBERON:0035845 ! enthesis +intersection_of: composed_primarily_of UBERON:0007846 ! dense regular connective tissue +relationship: composed_primarily_of UBERON:0007846 ! dense regular connective tissue + +[Term] +id: UBERON:0035847 +name: fibrocartilage enthesis +comment: fibrocartilaginous entheses attach to bone through a transitional layer of fibrocartilage from the fibrous tendon tissue the sites where tendons or ligaments insert into the bone +is_a: UBERON:0035845 ! enthesis +intersection_of: UBERON:0035845 ! enthesis +intersection_of: composed_primarily_of UBERON:0001995 ! fibrocartilage +relationship: composed_primarily_of UBERON:0001995 ! fibrocartilage + +[Term] +id: UBERON:0035848 +name: infraorbital margin +def: "The infraorbital margin is the lower margin of the orbita." [http://en.wikipedia.org/wiki/Infraorbital_margin] +synonym: "inferior orbital rim" EXACT [] +synonym: "infra-orbital margin" EXACT [FMA:53177, http://en.wikipedia.org/wiki/Infraorbital_margin] +synonym: "margo infraorbitalis" EXACT LATIN [FMA:TA] +xref: FMA:53177 +xref: http://www.snomedbrowser.com/Codes/Details/362642002 +xref: Infraorbital:margin +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0035849 ! orbital margin + +[Term] +id: UBERON:0035849 +name: orbital margin +def: "the mostly sharp edge of the orbital opening that is the peripheral border of the base of the pyramidal orbit." [http://www.medilexicon.com/medicaldictionary.php?t=52793] +synonym: "margin of orbit" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=52793] +synonym: "margo orbitalis" EXACT LATIN [FMA:TA, http://www.medilexicon.com/medicaldictionary.php?t=52793] +synonym: "orbital rim" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=52793] +xref: FMA:53176 +xref: http://www.snomedbrowser.com/Codes/Details/362641009 +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0001697 ! orbit of skull +relationship: surrounds UBERON:0004867 ! orbital cavity + +[Term] +id: UBERON:0035850 +name: infraorbital bridge +def: "A ridge of bone connecting left and right orbital margins located beneath the eye sockets." [UBERON:cjm] +synonym: "infra-orbital bridge" EXACT [] +is_a: UBERON:0005913 ! zone of bone organ +relationship: connects UBERON:0001697 ! orbit of skull +relationship: part_of UBERON:0003129 ! skull +relationship: present_in_taxon NCBITaxon:8499 + +[Term] +id: UBERON:0035872 +name: primary somatosensory area barrel field layer 5 +synonym: "barrel cortex layer 5" RELATED [NLX:157671] +synonym: "SSp-bfd5" RELATED ABBREVIATION [MBA:1070] +xref: MBA:1070 +xref: NLX:157671 +is_a: UBERON:0002301 ! layer of neocortex +relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel cortex + +[Term] +id: UBERON:0035873 +name: primary somatosensory area barrel field layer 1 +synonym: "SSp-bfd1" RELATED ABBREVIATION [MBA:981] +xref: MBA:981 +xref: NLX:157672 +is_a: UBERON:0002301 ! layer of neocortex +relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel cortex + +[Term] +id: UBERON:0035874 +name: primary somatosensory area barrel field layer 2/3 +synonym: "barrel cortex layer 2/3" RELATED [NLX:157673] +synonym: "SSp-bfd2/3" RELATED ABBREVIATION [MBA:201] +xref: MBA:201 +xref: NLX:157673 +is_a: UBERON:0002301 ! layer of neocortex +relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel cortex + +[Term] +id: UBERON:0035875 +name: primary somatosensory area barrel field layer 6b +synonym: "barrel cortex layer 6B" RELATED [NLX:157674] +synonym: "SSp-bfd6b" RELATED ABBREVIATION [MBA:1062] +xref: MBA:1062 +xref: NLX:157674 +is_a: UBERON:0002301 ! layer of neocortex +relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel cortex + +[Term] +id: UBERON:0035876 +name: primary somatosensory area barrel field layer 6a +synonym: "barrel cortex layer 6A" RELATED [NLX:157675] +synonym: "SSp-bfd6a" RELATED ABBREVIATION [MBA:1038] +xref: MBA:1038 +xref: NLX:157675 +is_a: UBERON:0002301 ! layer of neocortex +relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel cortex + +[Term] +id: UBERON:0035877 +name: primary somatosensory area barrel field layer 4 +synonym: "barrel cortex layer 4" RELATED [NLX:157676] +synonym: "SSp-bfd4" RELATED ABBREVIATION [MBA:1047] +xref: MBA:1047 +xref: NLX:157676 +is_a: UBERON:0002301 ! layer of neocortex +relationship: part_of UBERON:0010415 {source="MBA", source="NIFSTD"} ! barrel cortex + +[Term] +id: UBERON:0035878 +name: subchondral region of epiphysis +def: "The bone region of the epiphysis that provides underlying mechanical and physiological support for the cartilage of joint articular surfaces." [http://www.ncbi.nlm.nih.gov/pubmed/20392241, http://www.ncbi.nlm.nih.gov/pubmed/24084727, https://github.com/obophenotype/uberon/issues/1195, MGI:csmith] +synonym: "subchondral bone" EXACT [] +is_a: UBERON:0005055 ! zone of long bone +relationship: part_of UBERON:0001437 {source="MGI:csmith"} ! epiphysis + +[Term] +id: UBERON:0035879 +name: frontomaxillary suture +def: "A suture between the frontal bone and the frontal process of the maxilla" [http://medical-dictionary.thefreedictionary.com/frontomaxillary+suture] +synonym: "frontomaxillary suture of skull" EXACT [FMA:52950] +synonym: "sutura frontomaxillaris" EXACT LATIN [FMA:TA] +xref: FMA:52950 +is_a: UBERON:0003685 ! cranial suture +intersection_of: UBERON:0003685 ! cranial suture +intersection_of: connects UBERON:0000209 ! tetrapod frontal bone +intersection_of: connects UBERON:0013767 ! frontal process of maxilla +relationship: connects UBERON:0000209 ! tetrapod frontal bone +relationship: connects UBERON:0013767 ! frontal process of maxilla + +[Term] +id: UBERON:0035880 +name: zygomaticomaxillary suture +def: "A suture between the zygomatic bone and the zygomatic process of the maxilla." [http://medical-dictionary.thefreedictionary.com/zygomaticomaxillary+suture] +synonym: "sutura infraorbitalis" EXACT LATIN [FMA:TA] +synonym: "sutura zygomaticomaxillaris" EXACT LATIN [FMA:TA] +synonym: "zygomaticomaxillary suture of skull" EXACT [FMA:52953] +xref: FMA:52953 +is_a: UBERON:0003685 ! cranial suture +intersection_of: UBERON:0003685 ! cranial suture +intersection_of: connects UBERON:0001683 ! jugal bone +intersection_of: connects UBERON:0016477 ! zygomatic process of maxilla +relationship: connects UBERON:0001683 ! jugal bone +relationship: connects UBERON:0016477 ! zygomatic process of maxilla + +[Term] +id: UBERON:0035881 +name: ethmoidomaxillary suture +def: "A suture between the orbital surface of the body of the maxilla with the orbital plate of the ethmoid bone." [http://medical-dictionary.thefreedictionary.com/ethmoidomaxillary+suture] +synonym: "ethmoidomaxillary suture of skull" EXACT [FMA:52954] +synonym: "sutura ethmoidomaxillaris" EXACT LATIN [FMA:TA] +xref: FMA:52954 +is_a: UBERON:0003685 ! cranial suture +intersection_of: UBERON:0003685 ! cranial suture +intersection_of: connects UBERON:0001679 ! ethmoid bone +intersection_of: connects UBERON:0002397 ! maxilla +relationship: connects UBERON:0001679 ! ethmoid bone +relationship: connects UBERON:0002397 ! maxilla + +[Term] +id: UBERON:0035882 +name: sphenomaxillary suture +def: "an inconstant suture between the pterygoid process of the sphenoid bone and the body of the maxilla." [http://medical-dictionary.thefreedictionary.com/sphenomaxillary+suture] +synonym: "sphenomaxillary suture of skull" EXACT [FMA:52957] +synonym: "sutura sphenomaxillaris" EXACT LATIN [FMA:TA] +xref: FMA:52957 +is_a: UBERON:0003685 ! cranial suture +intersection_of: UBERON:0003685 ! cranial suture +intersection_of: connects UBERON:0002397 ! maxilla +intersection_of: connects UBERON:0004649 ! sphenoid bone pterygoid process +relationship: connects UBERON:0002397 ! maxilla +relationship: connects UBERON:0004649 ! sphenoid bone pterygoid process + +[Term] +id: UBERON:0035883 +name: lacrimomaxillary suture +def: "A suture between the lacrimal bone and the maxilla." [http://medical-dictionary.thefreedictionary.com/lacrimomaxillary+suture] +synonym: "lacrimomaxillary suture of skull" EXACT [FMA:52961] +synonym: "sutura lacrimomaxillaris" EXACT LATIN [FMA:TA] +xref: FMA:52961 +is_a: UBERON:0003685 ! cranial suture +intersection_of: UBERON:0003685 ! cranial suture +intersection_of: connects UBERON:0001680 ! lacrimal bone +intersection_of: connects UBERON:0002397 ! maxilla +relationship: connects UBERON:0001680 ! lacrimal bone +relationship: connects UBERON:0002397 ! maxilla + +[Term] +id: UBERON:0035884 +name: maxillary-premaxillary suture +def: "A suture between the maxilla and premaxilla." [http://www.ncbi.nlm.nih.gov/pubmed/21538817, https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2139, MGI:csmith] +synonym: "incisive suture" RELATED [MGI:csmith] +synonym: "maxillary-premaxillary incisive suture" EXACT [UBERON:cjm] +synonym: "premaxillary suture" RELATED [MGI:csmith] +is_a: UBERON:0003685 ! cranial suture +is_a: UBERON:2002260 ! premaxillary-maxillary joint +intersection_of: UBERON:0003685 ! cranial suture +intersection_of: connects UBERON:0002244 ! premaxilla +intersection_of: connects UBERON:0002397 ! maxilla + +[Term] +id: UBERON:0035885 +name: dorsal auditory area +synonym: "AUDd" RELATED ABBREVIATION [MBA:1011] +xref: MBA:1011 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001393 {source="MBA"} ! auditory cortex + +[Term] +id: UBERON:0035886 +name: posterior parietal association areas +synonym: "PTLp" RELATED ABBREVIATION [MBA:22] +xref: MBA:22 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001950 {source="MBA"} ! neocortex + +[Term] +id: UBERON:0035890 +name: postrhinal area +synonym: "VISpor" RELATED ABBREVIATION [MBA:312782628] +xref: MBA:312782628 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex + +[Term] +id: UBERON:0035892 +name: primary visual area, layer 6a +synonym: "VISp6a" RELATED ABBREVIATION [MBA:33] +xref: MBA:33 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex + +[Term] +id: UBERON:0035893 +name: anteromedial visual area +synonym: "VISam" RELATED ABBREVIATION [MBA:394] +xref: MBA:394 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex + +[Term] +id: UBERON:0035894 +name: anterolateral visual area +synonym: "VISal" RELATED ABBREVIATION [MBA:402] +xref: MBA:402 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex + +[Term] +id: UBERON:0035895 +name: lateral visual area +synonym: "VISl" RELATED ABBREVIATION [MBA:409] +xref: MBA:409 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex + +[Term] +id: UBERON:0035897 +name: posterolateral visual area +synonym: "VISpl" RELATED ABBREVIATION [MBA:425] +xref: MBA:425 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex + +[Term] +id: UBERON:0035900 +name: posteromedial visual area +synonym: "VISpm" RELATED ABBREVIATION [MBA:533] +xref: MBA:533 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex + +[Term] +id: UBERON:0035904 +name: primary visual area, layer 4 +synonym: "VISp4" RELATED ABBREVIATION [MBA:721] +xref: MBA:721 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex + +[Term] +id: UBERON:0035906 +name: primary visual area, layer 5 +synonym: "VISp5" RELATED ABBREVIATION [MBA:778] +xref: MBA:778 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex + +[Term] +id: UBERON:0035907 +name: primary visual area, layer 2/3 +synonym: "VISp2/3" RELATED ABBREVIATION [MBA:821] +xref: MBA:821 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex + +[Term] +id: UBERON:0035908 +name: anterolateral visual area, layer 5 +synonym: "VISal5" RELATED ABBREVIATION [MBA:233] +xref: MBA:233 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0035894 {source="MBA"} ! anterolateral visual area + +[Term] +id: UBERON:0035909 +name: posteromedial visual area, layer 6a +synonym: "VISpm6a" RELATED ABBREVIATION [MBA:257] +xref: MBA:257 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0035900 {source="MBA"} ! posteromedial visual area + +[Term] +id: UBERON:0035911 +name: postrhinal area, layer 4 +synonym: "VISpor4" RELATED ABBREVIATION [MBA:312782640] +xref: MBA:312782640 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0035890 {source="MBA"} ! postrhinal area + +[Term] +id: UBERON:0035912 +name: rostrolateral visual area +synonym: "VISrl" RELATED ABBREVIATION [MBA:417] +xref: MBA:417 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0035886 {source="MBA"} ! posterior parietal association areas + +[Term] +id: UBERON:0035913 +name: anteromedial visual area, layer 5 +synonym: "VISam5" RELATED ABBREVIATION [MBA:433] +xref: MBA:433 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0035893 {source="MBA"} ! anteromedial visual area + +[Term] +id: UBERON:0035914 +name: posteromedial visual area, layer 4 +synonym: "VISpm4" RELATED ABBREVIATION [MBA:501] +xref: MBA:501 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0035900 {source="MBA"} ! posteromedial visual area + +[Term] +id: UBERON:0035915 +name: lateral visual area, layer 4 +synonym: "VISl4" RELATED ABBREVIATION [MBA:573] +xref: MBA:573 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area + +[Term] +id: UBERON:0035916 +name: lateral visual area, layer 5 +synonym: "VISl5" RELATED ABBREVIATION [MBA:613] +xref: MBA:613 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area + +[Term] +id: UBERON:0035917 +name: dorsal auditory area, layer 4 +synonym: "AUDd4" RELATED ABBREVIATION [MBA:678] +xref: MBA:678 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0035885 {source="MBA"} ! dorsal auditory area + +[Term] +id: UBERON:0035918 +name: lateral visual area, layer 6a +synonym: "VISl6a" RELATED ABBREVIATION [MBA:74] +xref: MBA:74 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area + +[Term] +id: UBERON:0035919 +name: posterolateral visual area, layer 4 +synonym: "VISpl4" RELATED ABBREVIATION [MBA:869] +xref: MBA:869 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0035897 {source="MBA"} ! posterolateral visual area + +[Term] +id: UBERON:0035920 +name: rostrolateral area, layer 5 +synonym: "VISrl5" RELATED ABBREVIATION [MBA:312782616] +xref: MBA:312782616 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0035912 {source="MBA"} ! rostrolateral visual area + +[Term] +id: UBERON:0035922 +name: intraculminate fissure of cerebellum +def: "A fissure that divides the culmen lobule (lobules IV and V)" [http://www.ncbi.nlm.nih.gov/pubmed/1953602, MP:000999, UBERON:cjm] +synonym: "fissura intraculminalis" EXACT LATIN [FMA:TA] +synonym: "ICF" RELATED ABBREVIATION [DHBA:266441729] +synonym: "intraculminate fissure" EXACT [FMA:83737] +synonym: "intraculminate fissure" EXACT [HBA:9409] +xref: DHBA:266441729 +xref: FMA:83737 +xref: HBA:9409 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1995 +xref: http://www.snomedbrowser.com/Codes/Details/369052000 +xref: RadLex:RID6872 +is_a: UBERON:0003980 ! cerebellum fissure +intersection_of: UBERON:0003980 ! cerebellum fissure +intersection_of: adjacent_to UBERON:0004077 ! cerebellum vermis lobule IV +intersection_of: adjacent_to UBERON:0004079 ! cerebellum vermis lobule V +intersection_of: part_of UBERON:0007763 ! cerebellum vermis culmen +relationship: adjacent_to UBERON:0004077 ! cerebellum vermis lobule IV +relationship: adjacent_to UBERON:0004079 ! cerebellum vermis lobule V +relationship: dubious_for_taxon NCBITaxon:9606 +relationship: part_of UBERON:0007763 ! cerebellum vermis culmen + +[Term] +id: UBERON:0035924 +name: radiation of corpus callosum +def: "The spreading out of the fibers of the corpus callosum in the centrum semiovale of each cerebral hemisphere." [http://www.medilexicon.com/medicaldictionary.php?t=74819] +synonym: "CCRD" RELATED ABBREVIATION [DHBA:12026] +synonym: "corpus callosum radiation" EXACT [FMA:77693] +synonym: "radiatio corporis callosi" EXACT LATIN [FMA:TA] +synonym: "radiatio corporis callosi" RELATED LATIN [NeuroNames:1336] +synonym: "radiations of corpus callosum" RELATED PLURAL [HBA:265504962] +synonym: "radiations of the corpus callosum" RELATED PLURAL [NeuroNames:1336] +xref: DHBA:12026 +xref: FMA:77693 +xref: HBA:265504962 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1336 +xref: http://www.snomedbrowser.com/Codes/Details/279308000 +is_a: UBERON:0000122 {source="cjm"} ! neuron projection bundle +is_a: UBERON:0011215 ! central nervous system cell part cluster +relationship: part_of UBERON:0002336 {source="HBA"} ! corpus callosum + +[Term] +id: UBERON:0035925 +name: central sulcus of insula +synonym: "central fissure of insula" EXACT [FMA:83779] +synonym: "central fissure of insula" RELATED [NeuroNames:112] +synonym: "central fissure of island" EXACT [FMA:83779] +synonym: "central fissure of island" RELATED [NeuroNames:112] +synonym: "central insula sulcus" EXACT [FMA:83779] +synonym: "central insula sulcus" RELATED [NeuroNames:112] +synonym: "central insular sulcus" EXACT [FMA:83779] +synonym: "central insular sulcus" RELATED [NeuroNames:112] +synonym: "central sulcus of insula" EXACT [FMA:83779] +synonym: "central sulcus of the insula" RELATED [NeuroNames:112] +synonym: "CIS" RELATED ABBREVIATION [HBA:9399] +synonym: "CSIN" RELATED ABBREVIATION [DHBA:13227] +synonym: "fissura centralis insulae" EXACT LATIN [FMA:TA] +synonym: "fissura centralis insulae" RELATED LATIN [NeuroNames:112] +synonym: "sulcus centralis insulae" EXACT LATIN [FMA:TA] +synonym: "sulcus centralis insulae" RELATED LATIN [NeuroNames:112] +xref: DHBA:13227 +xref: FMA:83779 +xref: HBA:9399 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=112 +xref: http://www.snomedbrowser.com/Codes/Details/279348008 +is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus +is_a: UBERON:0019303 ! occipital sulcus +relationship: part_of UBERON:0002905 {source="HBA"} ! intralingual sulcus + +[Term] +id: UBERON:0035926 +name: preculminate fissure of cerebellum +synonym: "fissura preculminalis" EXACT LATIN [FMA:TA] +synonym: "PCF" RELATED ABBREVIATION [HBA:9408] +synonym: "postcentral fissure of the cerebellum" RELATED [NeuroNames:652] +synonym: "preculminate fissure" EXACT [FMA:83736] +xref: FMA:83736 +xref: HBA:9408 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=652 +xref: MBA:1095 +xref: RadLex:RID6871 +is_a: UBERON:0003980 {source="FMA"} ! cerebellum fissure + +[Term] +id: UBERON:0035927 +name: sulcus of parietal lobe +synonym: "parietal lobe sulci" EXACT PLURAL [HBA:9370] +synonym: "parietal lobe sulcus" EXACT [] +synonym: "PLs" RELATED ABBREVIATION [HBA:9370] +xref: HBA:9370 +xref: http://www.snomedbrowser.com/Codes/Details/314145001 +is_a: UBERON:0013118 ! sulcus of brain +intersection_of: UBERON:0013118 ! sulcus of brain +intersection_of: part_of UBERON:0001872 ! parietal lobe +relationship: part_of UBERON:0001872 ! parietal lobe + +[Term] +id: UBERON:0035928 +name: dorsolateral part of supraoptic nucleus +synonym: "dorsolateral part of the supraoptic nucleus" RELATED [NeuroNames:3151] +synonym: "pars dorsolateralis nuclei supraoptici" EXACT LATIN [FMA:TA] +synonym: "supraoptic nucleus proper" RELATED [NeuroNames:3151] +synonym: "supraoptic nucleus, dorsolateral part" RELATED [NeuroNames:3151] +synonym: "supraoptic nucleus, proper" RELATED [NeuroNames:3151] +xref: FMA:76770 +xref: HBA:4594 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3151 +is_a: UBERON:0002616 {source="HBA"} ! regional part of brain +relationship: part_of UBERON:0001929 ! supraoptic nucleus + +[Term] +id: UBERON:0035930 +name: retro-olivary nucleus +synonym: "nucleus retro-olivaris" EXACT LATIN [FMA:TA] +synonym: "retro-olivary cell group" EXACT [FMA:72476] +synonym: "RO" RELATED ABBREVIATION [DHBA:12467] +xref: DHBA:12467 +xref: FMA:72476 +xref: HBA:9181 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=575 +is_a: UBERON:0007247 {source="FMA"} ! nucleus of superior olivary complex + +[Term] +id: UBERON:0035931 +name: sagittal stratum +synonym: "sst" RELATED ABBREVIATION [DHBA:12082] +xref: DHBA:12082 +xref: FMA:277107 +xref: HBA:265505286 +is_a: UBERON:0007702 ! tract of brain +relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts + +[Term] +id: UBERON:0035932 +name: anterior segment of paracentral lobule +synonym: "anterior part of paracentral lobule" EXACT [FMA:273508] +synonym: "medial segment of precentral gyrus" EXACT [FMA:273508] +synonym: "paracentral lobule, anterior part" EXACT [HBA:4071] +synonym: "PCLa" RELATED ABBREVIATION [HBA:4071] +xref: FMA:273508 +xref: HBA:4071 +is_a: UBERON:0002616 {source="HBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0016525 {source="HBA"} ! frontal lobe +relationship: part_of UBERON:0035933 {source="FMA"} ! paracentral lobule + +[Term] +id: UBERON:0035933 +name: paracentral lobule +def: "The junction of the precentral gyrus and postcentral gyrus on the medial surface of the cerebral cortex. It lies across the boundary between the frontal lobe and the parietal lobe." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?type=a&ID=404] +synonym: "lobulus paracentralis" EXACT LATIN [FMA:TA] +xref: BTO:0005601 +xref: FMA:77534 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1341 +xref: http://www.snomedbrowser.com/Codes/Details/279202002 +xref: Paracentral:lobule +xref: RadLex:RID6449 +xref: Talairach:1047 +is_a: UBERON:0000200 {source="FMA"} ! gyrus +relationship: part_of UBERON:0000956 {source="BTO"} ! cerebral cortex +relationship: surrounded_by UBERON:0008967 {source="FMA"} ! centrum semiovale + +[Term] +id: UBERON:0035934 +name: posterior segment of paracentral lobule +synonym: "PCLp" RELATED ABBREVIATION [HBA:4125] +synonym: "posterior part of paracentral lobule" EXACT [FMA:273511] +xref: FMA:273511 +xref: HBA:4125 +is_a: UBERON:0002616 {source="HBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001872 {source="HBA"} ! parietal lobe +relationship: part_of UBERON:0035933 {source="FMA"} ! paracentral lobule + +[Term] +id: UBERON:0035935 +name: Meyer's loop of optic radiation +def: "part of the optic radiation which sweeps back on itself into the temporal lobe, just lateral to the temporal horn of the lateral ventricle. " [http://radiopaedia.org/articles/meyer-loop] +synonym: "inferior optic radiation" EXACT [NeuroNames:1466] +synonym: "Meyer's loop" EXACT [] +synonym: "or-lp" RELATED ABBREVIATION [HBA:265505214] +xref: FMA:280849 +xref: HBA:265505214 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1466 +is_a: UBERON:0022260 ! radiation of cerebral hemisphere +relationship: part_of UBERON:0022264 ! optic radiation + +[Term] +id: UBERON:0035937 +name: arcuate fasciculus +def: "The arcuate fasciculus (Latin, curved bundle) is the neural pathway connecting the posterior part of the temporoparietal junction with the frontal cortex in the brain and is now considered as part of the Superior longitudinal fasciculus." [http://en.wikipedia.org/wiki/Arcuate_fasciculus] +synonym: "AF" RELATED ABBREVIATION [DHBA:10569] +synonym: "arcuate fascicle" EXACT [FMA:276650] +synonym: "arcuate fascicle" RELATED [http://en.wikipedia.org/wiki/Arcuate_fasciculus] +synonym: "arcuate fasciculus" RELATED [NeuroNames:2063] +synonym: "ARF" RELATED ABBREVIATION [HBA:9231] +synonym: "cerebral arcuate fasciculus" EXACT [FMA:276650] +synonym: "fasciculus arcuatus" EXACT LATIN [FMA:TA] +synonym: "fibrae arcuatae cerebri" RELATED LATIN [NeuroNames:2063] +xref: Arcuate:fasciculus +xref: DHBA:10569 +xref: FMA:276650 +xref: HBA:9231 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2063 +is_a: UBERON:0022248 ! cerebral nerve fasciculus +relationship: part_of UBERON:0022246 {source="FMA"} ! superior longitudinal fasciculus +relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts + +[Term] +id: UBERON:0035938 +name: amiculum of inferior olive +synonym: "ami" RELATED ABBREVIATION [DHBA:12728] +synonym: "amiculum of olive" EXACT [FMA:72611] +synonym: "amiculum of the olive" EXACT [DHBA:12728] +synonym: "amiculum olivae" EXACT [FMA:72611] +synonym: "amiculum olivare" EXACT LATIN [FMA:TA] +synonym: "inferior olive amiculum" EXACT [FMA:72611] +xref: DHBA:12728 +xref: FMA:72611 +xref: HBA:265505538 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=752 +is_a: UBERON:0019262 ! white matter of myelencephalon +is_a: UBERON:0035939 {source="FMA"} ! amiculum + +[Term] +id: UBERON:0035939 +name: amiculum +def: "a dense surrounding coat of white fibers, as the sheath of the inferior olive and of the dentate nucleus." [http://medical-dictionary.thefreedictionary.com/amicula] +synonym: "amicula" RELATED PLURAL [] +xref: FMA:83870 +xref: RadLex:RID6708 +is_a: UBERON:0002316 ! white matter + +[Term] +id: UBERON:0035940 +name: central medullary reticular nuclear complex +synonym: "central group (medullary reticular formation)" EXACT [FMA:70663] +synonym: "central group (medullary reticular formation)" RELATED [NeuroNames:729] +synonym: "central medullary reticular complex" EXACT [FMA:70663] +synonym: "central medullary reticular group" EXACT [FMA:70663] +synonym: "central medullary reticular group" RELATED [NeuroNames:729] +synonym: "CMRt" RELATED ABBREVIATION [HBA:9588] +synonym: "nuclei centrales myelencephali" EXACT LATIN [FMA:TA] +synonym: "nuclei centrales myelencephali" RELATED LATIN [NeuroNames:729] +xref: FMA:70663 +xref: HBA:9588 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=729 +is_a: UBERON:0007245 {source="FMA"} ! nuclear complex of neuraxis +is_a: UBERON:0019263 ! gray matter of hindbrain +relationship: part_of UBERON:0002559 {source="HBA"} ! medullary reticular formation + +[Term] +id: UBERON:0035941 +name: Kimura membrane +def: "The thickening of the lower surface of the tectorial membrane into which the hair bundles of the outer hair cells are embedded." [http://www.ncbi.nlm.nih.gov/pubmed/18797289, https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2141, https://github.com/obophenotype/uberon/issues/1200, MGI:smith] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005764 {source="cjm"} ! acellular membrane +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002233 ! tectorial membrane of cochlea + +[Term] +id: UBERON:0035942 +name: space between upper and lower jaws +def: "The space between the upper jaw skeleton and lower jaw skeleton (including teeth) that is formed when when biting." [UBERON:cjm] +synonym: "bite" RELATED [] +is_a: UBERON:0000464 ! anatomical space +relationship: adjacent_to UBERON:0003277 ! skeleton of upper jaw +relationship: adjacent_to UBERON:0003278 ! skeleton of lower jaw +relationship: part_of UBERON:0000165 ! mouth +relationship: part_of UBERON:0003129 ! skull + +[Term] +id: UBERON:0035943 +name: life cycle temporal boundary +def: "A temporal boundary connecting two life cycle stages that follow in immediate succession. A temporal boundary is an abstract, instantaneous entity." [https://orcid.org/0000-0002-6601-2165] +subset: upper_level +is_a: UBERON:0000000 ! processual entity + +[Term] +id: UBERON:0035944 +name: life-death temporal boundary +def: "A life cycle temporal boundary that marks the end of the life cycle of the organism." [https://github.com/obophenotype/uberon/issues/1172, https://orcid.org/0000-0002-6601-2165] +synonym: "death" RELATED INCONSISTENT [] +synonym: "end of life" RELATED [] +synonym: "end of life cycle" EXACT [] +synonym: "moment of death" EXACT [] +synonym: "time of death" EXACT [] +is_a: UBERON:0035943 ! life cycle temporal boundary +intersection_of: UBERON:0035943 ! life cycle temporal boundary +intersection_of: ends UBERON:0000104 ! life cycle +relationship: ends UBERON:0000104 ! life cycle +relationship: part_of UBERON:0000104 ! life cycle + +[Term] +id: UBERON:0035945 +name: start of life cycle +def: "A life cycle temporal boundary that marks the start of the life cycle of the organism." [https://github.com/obophenotype/uberon/issues/1172, https://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0035943 ! life cycle temporal boundary +intersection_of: UBERON:0035943 ! life cycle temporal boundary +intersection_of: starts UBERON:0000104 ! life cycle +relationship: part_of UBERON:0000104 ! life cycle +relationship: starts UBERON:0000104 ! life cycle + +[Term] +id: UBERON:0035946 +name: start of neonate stage +def: "A life cycle temporal boundary that marks the start of the neonate stage of the organism." [https://github.com/obophenotype/uberon/issues/1204, https://orcid.org/0000-0002-6601-2165] +synonym: "birth" RELATED INCONSISTENT [] +synonym: "moment of birth" EXACT [] +synonym: "time of birth" EXACT [] +is_a: UBERON:0035943 ! life cycle temporal boundary +intersection_of: UBERON:0035943 ! life cycle temporal boundary +intersection_of: starts UBERON:0007221 ! neonate stage +relationship: part_of UBERON:0007221 ! neonate stage +relationship: starts UBERON:0007221 ! neonate stage + +[Term] +id: UBERON:0035955 +name: obsolete cerebrum +def: "Historically the term cerebrum has been used for several different parts of the CNS including the whole brain, the cerebral hemispheres and the sum of cerebral cortex and adjacent cerebral white matter. A thorough discussion of the definitional history is to be found in Anthoney-1994" [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2068, http://braininfo.rprc.washington.edu/Source.aspx?ID=118&questID=2068] +is_obsolete: true +consider: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2068 +consider: UBERON:0001869 +consider: UBERON:0001893 + +[Term] +id: UBERON:0035956 +name: epididymal lumen +def: "The lumen of the epididymis" [GOC:DOS, https://github.com/obophenotype/uberon/issues/1209] +synonym: "epididymis lumen" EXACT [FMA:18274] +synonym: "lumen of epididymis" EXACT [FMA:18274] +xref: FMA:18274 +xref: http://www.snomedbrowser.com/Codes/Details/367722009 +is_a: UBERON:0000464 ! anatomical space +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0001301 ! epididymis +relationship: contains UBERON:0006530 {source="FMA"} ! seminal fluid +relationship: luminal_space_of UBERON:0001301 ! epididymis +relationship: part_of UBERON:0001301 ! epididymis + +[Term] +id: UBERON:0035957 +name: antotic pillar +def: "The posteriormost orbital pillar, in front of the otic capsule." [ISBN:978-0226870137] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0035959 ! orbital pillar +relationship: part_of UBERON:0005745 ! optic foramen + +[Term] +id: UBERON:0035958 +name: preoptic pillar +def: "The anteriormost orbital pillar, in front of the otic capsule." [ISBN:978-0226870137] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0035959 ! orbital pillar +relationship: part_of UBERON:0005745 ! optic foramen + +[Term] +id: UBERON:0035959 +name: orbital pillar +def: "A skeletal projection in the chondrocranium that developmentally connects the orbital cartilage and may develop into bone regions." [ISBN:978-0226870137, UBERON:cjm] +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0002241 ! chondrocranium + +[Term] +id: UBERON:0035960 +name: velum feeding organ +def: "The locomotory and feeding organ, found in the larval veliger stage of bivalves." [BTO:0005405] +synonym: "velum" EXACT [BTO:0005405] +xref: BTO:0005405 +is_a: UBERON:0000062 ! organ +relationship: part_of UBERON:0002548 ! larva + +[Term] +id: UBERON:0035961 +name: obsolete proboscis +def: "1: The trunk of an elephant; also: any long flexible snout. 2: Any of various elongated or extensible tubular processes as the sucking organ of a butterfly of the oral region of an invertebrate." [BTO:0001117] +is_obsolete: true +consider: BTO:0001117 +consider: UBERON:0014479 + +[Term] +id: UBERON:0035962 +name: supravaginal part of cervix +def: "Supravaginal portion of cervix: the part of the cervix uteri that does not protrude into the vagina." [BTO:0001851, Dorlands_Medical_Dictionary:MerckSource] +synonym: "portio supravaginalis cervicis" EXACT LATIN [FMA:TA] +xref: BTO:0001851 +xref: FMA:77055 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0000002 {source="FMA"} ! uterine cervix + +[Term] +id: UBERON:0035963 +name: epithelial lining fluid +def: "Epithelial lining fluid forms a thin fluid layer that covers the mucosa of the alveoli, the small airways, and the large airways." [BTO:0005566, http://www.ncbi.nlm.nih.gov/pubmed/21948403] +synonym: "ELF" RELATED [BTO:0005566] +xref: BTO:0005566 +xref: FMA:276456 +is_a: UBERON:0006314 ! bodily fluid +relationship: part_of UBERON:0002299 ! alveolus of lung +relationship: produced_by UBERON:0035967 ! alveolar mucosa + +[Term] +id: UBERON:0035964 +name: promontory of tympanic cavity +def: "The promontory of the tympanic cavity, better known as the cochlear promontory is a rounded hollow prominence, formed by the projection outward of the first turn of the cochlea. It is placed between the fenestrae, and is furrowed on its surface by small grooves, for the lodgement of branches of the tympanic plexus. A minute spicule of bone frequently connects the promontory to the pyramidal eminence." [http://en.wikipedia.org/wiki/Promontory_of_tympanic_cavity] +synonym: "promontorium" RELATED [http://en.wikipedia.org/wiki/Promontory_of_tympanic_cavity] +synonym: "promontorium tympani" EXACT LATIN [FMA:TA] +synonym: "promontory of the tympanic cavity" RELATED [http://en.wikipedia.org/wiki/Promontory_of_tympanic_cavity] +synonym: "tympanic cavity promontory" EXACT [FMA:77694] +xref: BTO:0003089 +xref: FMA:77694 +xref: http://en.wikipedia.org/wiki/Promontory_of_tympanic_cavity +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0001756 ! middle ear + +[Term] +id: UBERON:0035965 +name: wall of blood vessel +synonym: "blood vessel wall" EXACT [FMA:67473] +synonym: "vascular wall" RELATED [BTO:0004378] +xref: BTO:0004378 +xref: EMAPA:37987 {source="MA:th"} +xref: FMA:67473 +is_a: UBERON:0000060 ! anatomical wall +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0001981 ! blood vessel +relationship: composed_primarily_of UBERON:0004797 ! blood vessel layer +relationship: part_of UBERON:0001981 ! blood vessel + +[Term] +id: UBERON:0035966 +name: scleral lamina cribrosa +def: "The perforated part of the sclera through which pass the axons of the retinal ganglion cells." [BTO:0004277, Dorlands_Medical_Dictionary:MerckSource] +synonym: "lamina cribrosa of sclera" EXACT [FMA:58371] +synonym: "lamina cribrosa of sclera" RELATED [BTO:0004277] +synonym: "lamina cribrosa sclerae" EXACT LATIN [FMA:TA] +xref: BTO:0004277 +xref: FMA:58371 +xref: http://www.snomedbrowser.com/Codes/Details/281086001 +is_a: UBERON:0004923 {source="FMA"} ! organ component layer +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0001773 {source="BTO"} ! sclera + +[Term] +id: UBERON:0035967 +name: alveolar mucosa +def: "The mucous membrane apical to the attached gingiva." [BTO:0004046, http://www.biology-online.org/dictionary/] +xref: BTO:0004046 +xref: FMA:289360 +is_a: UBERON:0003729 ! mouth mucosa +relationship: part_of UBERON:0001758 {source="BTO"} ! periodontium + +[Term] +id: UBERON:0035968 +name: bulboid corpuscle +def: "A receptor in the transitional zone between mucous membrane and skin." [http://en.wikipedia.org/wiki/Bulboid_corpuscle, ISBN:9780849388118] +synonym: "bulboid corpuscles" RELATED [http://en.wikipedia.org/wiki/Bulboid_corpuscle] +synonym: "end bulbs" RELATED [http://en.wikipedia.org/wiki/Bulboid_corpuscle] +synonym: "end bulbs of krause" RELATED [http://en.wikipedia.org/wiki/Bulboid_corpuscle] +synonym: "end-bulb of krause" RELATED [http://en.wikipedia.org/wiki/Bulboid_corpuscle] +synonym: "end-bulbs of krause" RELATED [http://en.wikipedia.org/wiki/Bulboid_corpuscle] +synonym: "krause corpuscle" RELATED [http://en.wikipedia.org/wiki/Bulboid_corpuscle] +synonym: "krause's end-bulbs" RELATED [http://en.wikipedia.org/wiki/Bulboid_corpuscle] +synonym: "mucocutaneous corpuscle" RELATED [ISBN:9780849388118] +synonym: "mucocutaneous end-organ" RELATED [ISBN:9780849388118] +synonym: "spheroidal tactile corpuscles" RELATED [http://en.wikipedia.org/wiki/Bulboid_corpuscle] +xref: Bulboid:corpuscle +is_a: UBERON:0012451 ! sensory receptor + +[Term] +id: UBERON:0035969 +name: encapsulated tactile receptor +def: "A tacile mechanoreceptor that lacks a capsule." [UBERON:cjm] +synonym: "encapsulated nerve ending" EXACT [FMA:83995] +xref: FMA:83995 +is_a: UBERON:0035016 {source="FMA"} ! tactile mechanoreceptor + +[Term] +id: UBERON:0035970 +name: calcar avis of the lateral ventricle +def: "On the medial wall of the posterior cornu of the lateral ventricle is a longitudinal eminence, the calcar avis (hippocampus minor), which is an involution of the ventricular wall produced by the calcarine fissure. It is sometimes visible on ultrasonogram." [http://en.wikipedia.org/wiki/Calcar_avis] +synonym: "CalA" RELATED ABBREVIATION [DHBA:12095] +synonym: "calcar" RELATED [BTO:0004691] +synonym: "calcar avis" RELATED [BTO:0004691] +synonym: "calcarine spur" RELATED [BTO:0004691] +synonym: "ergot" RELATED [BTO:0004691] +synonym: "Haller unguis" RELATED [BTO:0004691] +synonym: "hippocampus minor" EXACT [BTO:0004691] +synonym: "minor hippocampus" RELATED [BTO:0004691] +synonym: "Morand spur" RELATED [BTO:0004691] +synonym: "pes hippocampi minor" RELATED LATIN [NeuroNames:210] +synonym: "unguis avis" RELATED [BTO:0004691] +xref: BTO:0004691 +xref: Calcar:avis +xref: DHBA:12095 +xref: FMA:83707 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=210 +xref: http://www.snomedbrowser.com/Codes/Details/369271006 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002285 ! telencephalic ventricle +relationship: part_of UBERON:0002421 {source="BTO"} ! hippocampal formation + +[Term] +id: UBERON:0035971 +name: postsubiculum +def: "Division of subicular cortex characterized by projections from the anterodorsal thalamic nucleus and to a lesser extent the anteroventral nucleus, bordered ventrally and laterally by the presubiculum and dorsally and medially by the retrosplenial granular a cortex.. The border is characterized by an abrupt change in the cyto- and chemoarchitecture" [NLX:144245] +synonym: "POST" RELATED ABBREVIATION [MBA:1037] +synonym: "postsubicular cortex" RELATED [NLX:144245] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1105 +xref: MBA:1037 +xref: NLX:144245 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0022230 {source="MBA"} ! retrohippocampal region + +[Term] +id: UBERON:0035972 +name: interanterodorsal nucleus of the thalamus +def: "a group of nerve cells that bridges the midline of the thalamus between the anterodorsal nucleus of the thalamus of the left and right sides. According to Crosby (1962), it is more developed and consistently present in rodents than in primates (adapted from Brain Info)." [NLX:144468] +synonym: "IAD" RELATED ABBREVIATION [MBA:1113] +synonym: "interanterodorsal nucleus of thalamus" RELATED [NLX:144468] +synonym: "interanterodorsal nucleus of the thalamus" RELATED [NeuroNames:1273] +synonym: "interanterodorsal nucleus thalamus" RELATED [NeuroNames:1273] +synonym: "interanterodorsal thalamic nucleus" RELATED [NeuroNames:1273] +synonym: "nucleus commissura interanterodorsalis" RELATED LATIN [NeuroNames:1273] +synonym: "nucleus interanterodorsalis" RELATED LATIN [NeuroNames:1273] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1273 +xref: MBA:1113 +xref: NLX:144468 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +relationship: part_of UBERON:0002788 {source="MBA"} ! anterior nuclear group + +[Term] +id: UBERON:0035973 +name: nucleus incertus +def: "Distinct cell group in caudoventral regions of the pontine periventricular gray, adjacent to the ventromedial border of the caudal dorsal tegmental nucleus." [NLX:144477] +synonym: "central Gray pars 0" RELATED [NLX:144477] +synonym: "central Gray part alpha" RELATED [NLX:144477] +synonym: "charles Watson. - 5th ed.)" RELATED [NLX:144477] +synonym: "Inc" RELATED ABBREVIATION [DMBA:17084] +synonym: "NI" RELATED ABBREVIATION [MBA:604] +synonym: "NI" RELATED ABBREVIATION [DHBA:146034972] +synonym: "NI, CG0, CGalpha, CGbeta" RELATED ABBREVIATION [NLX:144477] +synonym: "nucleus incertus (Streeter)" RELATED [NeuroNames:1093] +xref: DHBA:146034972 +xref: DMBA:17084 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1093 +xref: MBA:604 +xref: NLX:144477 +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009662 ! hindbrain nucleus +relationship: part_of UBERON:0003023 ! pontine tegmentum + +[Term] +id: UBERON:0035974 +name: anteroventral preoptic nucleus +synonym: "anteroventral preoptic nuclei" RELATED PLURAL [NLX:17240] +synonym: "AVP" RELATED ABBREVIATION [MBA:263] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1813 +xref: MBA:263 +xref: NLX:17240 +is_a: UBERON:0007251 ! preoptic nucleus + +[Term] +id: UBERON:0035975 +name: intergeniculate leaflet of the lateral geniculate complex +synonym: "IGL" RELATED ABBREVIATION [MBA:27] +synonym: "intergeniculate leaflet of the lateral geniculate complex" RELATED [NeuroNames:1956] +synonym: "intergeniculate leaflet, lateral geniculate complex" RELATED [NeuroNames:1956] +synonym: "lateral geniculate complex, intergeniculate leaflet" RELATED [NeuroNames:1956] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1956 +xref: MBA:27 +xref: NLX:144470 +is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +relationship: part_of UBERON:0001926 {source="NIFSTD"} ! lateral geniculate body + +[Term] +id: UBERON:0035976 +name: accessory abducens nucleus +def: "A small cluster of neurons in the pontine reticular formation in some mammals, containing the majority of motoneurons innervating thenretractor bulbi muscles of the eye" [NLX:144454] +synonym: "ACVI" RELATED ABBREVIATION [MBA:568] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1860 +xref: MBA:568 +xref: NLX:144454 +is_a: UBERON:0007413 ! nucleus of pontine reticular formation + +[Term] +id: UBERON:0035977 +name: bed nucleus of the accessory olfactory tract +def: "a group of cells near the surface of the brain between the supraoptic nucleus and the cortical amygdalar nucleus in the rat ( Swanson-1998 ) and the mouse ( Paxinos-2001 ). It is one of five subdivisions of the medial amygdalar nucleus." [NeuroNames:1179] +synonym: "accessory olfactory formation" RELATED [NeuroNames:1179] +synonym: "BA" RELATED ABBREVIATION [MBA:292] +synonym: "bed nucleus accessory olfactory tract (Scalia-Winans)" RELATED [NeuroNames:1179] +synonym: "bed nucleus of the accessory olfactory tract" RELATED [NeuroNames:1179] +synonym: "nucleus of the accessory olfactory tract" RELATED [NeuroNames:1179] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1179 +xref: MBA:292 +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0002892 ! medial amygdaloid nucleus + +[Term] +id: UBERON:0035999 +name: dopaminergic cell groups +def: "collections of neurons in the central nervous system that have been demonstrated by histochemical fluorescence to contain the neurotransmitter dopamine ( Fuxe-1970 )" [NeuroNames:3138] +synonym: "DA cell groups" RELATED [NeuroNames:3138] +synonym: "dopaminergic cell groups" RELATED [NeuroNames:3138] +synonym: "dopaminergic nuclei" RELATED [NeuroNames:3138] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3138 +is_a: UBERON:0002616 ! regional part of brain + +[Term] +id: UBERON:0036000 +name: A8 dopaminergic cell group +synonym: "A8 cell group" RELATED [NeuroNames:1061] +synonym: "A8 dopamine cells" RELATED [NeuroNames:1061] +synonym: "dopaminergic group A8" RELATED [NeuroNames:1061] +synonym: "lateral midbrain reticular formation A8 group" RELATED [NeuroNames:1061] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1061 +is_a: UBERON:0035999 ! dopaminergic cell groups + +[Term] +id: UBERON:0036001 +name: A14 dopaminergic cell group +synonym: "A14 cell group" RELATED [NeuroNames:1200] +synonym: "A14 dopamine cells" RELATED [NeuroNames:1200] +synonym: "cell group A14" RELATED [NeuroNames:1200] +synonym: "dopaminergic group A14" RELATED [NeuroNames:1200] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1200 +is_a: UBERON:0035999 ! dopaminergic cell groups + +[Term] +id: UBERON:0036002 +name: A15 dopaminergic cell group +synonym: "A15 cell group" RELATED [NeuroNames:1798] +synonym: "dopaminergic group A15" RELATED [NeuroNames:1798] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1798 +is_a: UBERON:0035999 ! dopaminergic cell groups + +[Term] +id: UBERON:0036003 +name: A9 dopaminergic cell group +synonym: "A9 cell group" RELATED [NeuroNames:1811] +synonym: "dopaminergic group A9" RELATED [NeuroNames:1811] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1811 +xref: NLX:54027 +is_a: UBERON:0035999 ! dopaminergic cell groups + +[Term] +id: UBERON:0036004 +name: A17 dopaminergic cell group +synonym: "A17 cell group" RELATED [NeuroNames:1832] +synonym: "dopaminergic group A17" RELATED [NeuroNames:1832] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1832 +is_a: UBERON:0035999 ! dopaminergic cell groups + +[Term] +id: UBERON:0036005 +name: A10 dopaminergic cell group +synonym: "A10 cell group" RELATED [NeuroNames:1835] +synonym: "dopaminergic group A10" RELATED [NeuroNames:1835] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1835 +xref: NLX:144071 +is_a: UBERON:0035999 ! dopaminergic cell groups + +[Term] +id: UBERON:0036006 +name: A11 dopaminergic cell group +synonym: "A11 cell group" RELATED [NeuroNames:1850] +synonym: "A11 dopamine cells" RELATED [NeuroNames:1850] +synonym: "dopaminergic group A11" RELATED [NeuroNames:1850] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1850 +is_a: UBERON:0035999 ! dopaminergic cell groups + +[Term] +id: UBERON:0036007 +name: A13 dopaminergic cell group +def: "A group of cells that fluoresce for dopamine and are distributed in clusters that, in the primate, are ventral and medial to the mammillothalamic tract of the hypothalamus; a few extend into the reuniens nucleus of the thalamus (Felten-1983). In the mouse A13 is located ventral to the mammillothalamic tract of the thalamus in the zona incerta (adapted from Brain Info)" [NLX:91101] +synonym: "A13" RELATED ABBREVIATION [MBA:796] +synonym: "A13 cell group" RELATED [NeuroNames:1851] +synonym: "A13 dopamine cells" RELATED [NeuroNames:1851] +synonym: "dopaminergic group A13" RELATED [NeuroNames:1851] +synonym: "zona incerta, dopaminergic group" RELATED [NeuroNames:1851] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1851 +xref: MBA:796 +xref: NLX:91101 +is_a: UBERON:0035999 ! dopaminergic cell groups +relationship: part_of UBERON:0001907 {source="MBA"} ! zona incerta + +[Term] +id: UBERON:0036008 +name: A16 dopaminergic cell group +synonym: "A16 cell group" RELATED [NeuroNames:1867] +synonym: "dopaminergic group A16" RELATED [NeuroNames:1867] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1867 +is_a: UBERON:0035999 ! dopaminergic cell groups + +[Term] +id: UBERON:0036009 +name: A12 dopaminergic cell group +synonym: "A12 cell group" RELATED [NeuroNames:1880] +synonym: "A12 dopamine cells" RELATED [NeuroNames:1880] +synonym: "dopaminergic group A12" RELATED [NeuroNames:1880] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1880 +is_a: UBERON:0035999 ! dopaminergic cell groups + +[Term] +id: UBERON:0036010 +name: Aaq dopaminergic cell group +synonym: "Aaq cell group" RELATED [NeuroNames:1889] +synonym: "dopaminergic group Aaq" RELATED [NeuroNames:1889] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1889 +is_a: UBERON:0035999 ! dopaminergic cell groups + +[Term] +id: UBERON:0036011 +name: telencephalic dopaminergic cell group +synonym: "telencephalic DA cell group" RELATED [NeuroNames:1770] +synonym: "telencephalic DA neurons" RELATED [NeuroNames:1770] +synonym: "telencephalic dopamine cells" RELATED [NeuroNames:1770] +synonym: "telencephalic dopaminergic group" RELATED [NeuroNames:1770] +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1770 +is_a: UBERON:0035999 ! dopaminergic cell groups + +[Term] +id: UBERON:0036012 +name: nucleus of the brachium of the inferior colliculus +synonym: "brachial nucleus of the inferior colliculus" RELATED [NeuroNames:1112] +synonym: "BrC" RELATED ABBREVIATION [HBA:9483] +synonym: "NB" RELATED ABBREVIATION [MBA:580] +synonym: "nucleus brachium inferior colliculus" RELATED [NeuroNames:1112] +synonym: "nucleus of the brachium of the inferior colliculus" RELATED [NeuroNames:1112] +xref: HBA:9483 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1112 +xref: MBA:580 +xref: NLX:144476 +is_a: UBERON:0002616 {source="HBA"} ! regional part of brain +relationship: part_of UBERON:0002314 {source="HBA"} ! midbrain tectum + +[Term] +id: UBERON:0036013 +name: intergluteal cleft +def: "The line that divided the gluteal regions of the body." [https://github.com/obophenotype/uberon/issues/1216] +subset: pheno_slim +synonym: "anal cleft" EXACT [FMA:20234] +synonym: "crena analis" EXACT LATIN [FMA:TA] +synonym: "crena ani" EXACT LATIN [FMA:TA] +synonym: "crena interglutealis" EXACT LATIN [FMA:TA] +synonym: "intergluteal crease" EXACT [FMA:20234] +synonym: "natal cleft" EXACT [FMA:20234] +xref: FMA:20234 +is_a: UBERON:0006800 ! anatomical line +intersection_of: UBERON:0006800 {exactly="2"} ! anatomical line +intersection_of: adjacent_to UBERON:0013691 {exactly="2"} ! buttock +relationship: adjacent_to UBERON:0013691 ! buttock +relationship: part_of UBERON:0001137 ! dorsum +relationship: part_of UBERON:0002355 ! pelvic region of trunk + +[Term] +id: UBERON:0036014 +name: gluteal sulcus +def: "A horizontal crease formed by the inferior aspect of the buttocks and the posterior upper leg." [http://en.wikipedia.org/wiki/Gluteal_sulcus, https://github.com/obophenotype/uberon/issues/1216] +comment: Children with developmental dysplasia of the hips are born with uneven gluteal folds and can be diagnosed with physical examination and sonogram +subset: pheno_slim +synonym: "gluteal crease" RELATED [http://en.wikipedia.org/wiki/Gluteal_sulcus] +synonym: "gluteal fold" EXACT [FMA:20233, http://en.wikipedia.org/wiki/Gluteal_sulcus] +synonym: "horizontal gluteal crease" RELATED [http://en.wikipedia.org/wiki/Gluteal_sulcus] +synonym: "sulcus glutealis" EXACT LATIN [FMA:TA] +xref: FMA:20233 +xref: Gluteal:sulcus +xref: http://www.snomedbrowser.com/Codes/Details/362679004 +is_a: UBERON:0007651 ! anatomical junction +intersection_of: UBERON:0007651 ! anatomical junction +intersection_of: continuous_with UBERON:0002103 ! hindlimb +intersection_of: continuous_with UBERON:0013691 ! buttock +relationship: continuous_with UBERON:0002103 ! hindlimb +relationship: continuous_with UBERON:0013691 ! buttock +relationship: part_of UBERON:0001137 ! dorsum +relationship: part_of UBERON:0002355 ! pelvic region of trunk +relationship: present_in_taxon NCBITaxon:9604 + +[Term] +id: UBERON:0036015 +name: castoreum +def: "A yellowish pungent liquid that is a mixture of the castor sacs (an anal gland in the taxon Castoreum) and urine." [http://www.jstor.org/stable/2425894, UBERON:rc] +comment: Uses to construct scent mounds +is_a: UBERON:0000456 {source="cjm"} ! secretion of exocrine gland +relationship: has_part UBERON:0001088 ! urine +relationship: has_part UBERON:0013212 ! anal sac gland secretion + +[Term] +id: UBERON:0036016 +name: honey +def: "A sweet viscid material elaborated out of the nectar of flowers in the honey sac of various bees." [BTO:0000605, http://en.wikipedia.org/wiki/Honey#Formation] +xref: BTO:0000605 +xref: http://en.wikipedia.org/wiki/Honey +is_a: UBERON:0036017 ! regurgitated substance + +[Term] +id: UBERON:0036017 +name: regurgitated substance +def: "A bodily fluid consisting of the contents of the digestive tract expulsed through the anterior portion of the digestive tract." [UBERON:cjm] +synonym: "regurgitate" RELATED [] +is_a: UBERON:0000463 ! organism substance + +[Term] +id: UBERON:0036018 +name: regurgitated pellet +def: "A mass of undigested parts of a bird's food that some bird species occasionally regurgitate from their proventriculus." [http://en.wikipedia.org/wiki/Pellet_(ornithology)] +comment: The contents of a bird's pellet depend on its diet, but can include the exoskeletons of insects, indigestible plant matter, bones, fur, feathers, bills, claws, and teeth +synonym: "casting" RELATED [] +synonym: "pellet" RELATED [] +is_a: UBERON:0036017 ! regurgitated substance + +[Term] +id: UBERON:0036019 +name: castor sac +def: "A non-glandular region of the anal wall in which castoreum is produced." [http://www.ncbi.nlm.nih.gov/pubmed/24415179] +is_a: UBERON:0008978 ! anal sac + +[Term] +id: UBERON:0036043 +name: paravermic lobule X +synonym: "paravermis, flocculonodular lobe portion" RELATED [DHBA:12389] +synonym: "PV-X" RELATED ABBREVIATION [HBA:4730] +xref: DHBA:12389 +xref: HBA:4730 +is_a: UBERON:0027285 {source="cjm"} ! paravermis lobule area +is_a: UBERON:0027331 ! flocculonodular lobe, hemisphere portion +relationship: part_of UBERON:0001063 {source="HBA"} ! flocculus + +[Term] +id: UBERON:0036044 +name: cerebellum vermis lobule VIIAf +synonym: "CbVIIa1" RELATED ABBREVIATION [DHBA:12846] +synonym: "lobule VIIAf/crus I (folium and superior semilunar lobule)" EXACT [DHBA:12846] +synonym: "VIIAf" EXACT ABBREVIATION [HBA:4706] +xref: DHBA:12846 +xref: HBA:4706 +is_a: UBERON:0002749 ! regional part of cerebellar cortex +relationship: part_of UBERON:0004009 {source="HBA"} ! cerebellum posterior vermis + +[Term] +id: UBERON:0036063 +name: quadrangular lobule +xref: FMA:272300 +is_a: UBERON:0004003 {source="FMA"} ! cerebellum hemisphere lobule + +[Term] +id: UBERON:0036065 +name: cerebellum vermis lobule VIIAt +synonym: "CbVIIa2" RELATED ABBREVIATION [DHBA:12847] +synonym: "lobule VIIAt/crus II (tuber and inferior semilunar lobule)" EXACT [DHBA:12847] +synonym: "VIIAt" EXACT ABBREVIATION [HBA:4707] +xref: DHBA:12847 +xref: HBA:4707 +is_a: UBERON:0002749 ! regional part of cerebellar cortex +relationship: part_of UBERON:0004009 {source="HBA"} ! cerebellum posterior vermis + +[Term] +id: UBERON:0036066 +name: inferior endocardial cushion +def: "The endocardial cushion that forms on the ventral surface of the AV canal." [GOC:rl, https://embryology.med.unsw.edu.au/embryology/index.php/Intermediate_-_Atrial_Ventricular_Septation, https://github.com/obophenotype/uberon/issues/1226] +synonym: "ventral endocardial cushion" EXACT [] +is_a: UBERON:0002062 ! endocardial cushion + +[Term] +id: UBERON:0036067 +name: superior endocardial cushion +def: "The endocardial cushion that forms on the dorsal surface of the AV canal." [GOC:rl, https://embryology.med.unsw.edu.au/embryology/index.php/Intermediate_-_Atrial_Ventricular_Septation, https://github.com/obophenotype/uberon/issues/1226] +synonym: "dorsal endocardial cushion" EXACT [] +is_a: UBERON:0002062 ! endocardial cushion + +[Term] +id: UBERON:0036068 +name: subglottis +def: "The lower portion of the larynx, extending from just beneath the vocal cords down to the top of the trachea." [http://en.wikipedia.org/wiki/Subglottis, MP:0030000, ORCID:orcid.org/0000-0002-6490-7723] +synonym: "infraglottic part of larynx" EXACT [FMA:55477] +synonym: "subglottic larynx" EXACT [FMA:55477] +synonym: "subglottic region" EXACT [MP:0030000] +xref: EMAPA:37969 {source="MA:th"} +xref: FMA:55477 +xref: http://www.snomedbrowser.com/Codes/Details/281511009 +xref: NCIT:C12280 +is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract +relationship: part_of UBERON:0001737 ! larynx + +[Term] +id: UBERON:0036069 +name: tracheoesophageal fold +def: "One of two longitudinal ridges that develop caudal to the pharynx and fuses to give rise to the tracheoesophageal septum." [https://web.duke.edu/anatomy/embryology/gi/gi.html, UBERON:cjm] +synonym: "esophagotracheal fold" EXACT [UBERON:cjm] +xref: NCIT:C34315 +is_a: UBERON:0002050 ! embryonic structure +relationship: develops_from UBERON:0000926 {source="Laryngotracheal:groove"} ! mesoderm + +[Term] +id: UBERON:0036070 +name: tracheoesophageal septum +def: "The tracheoesophageal septum is formed from the tracheoesophageal folds which fuse in the midline to form a structure called tracheoesophageal septum. It divides the esophagus from the trachea. It divides the foregut tube into the laryngotracheal tube ventrally and esophagus dorsally. Developmental abnormalities can lead to a tracheoesophageal fistula." [http://en.wikipedia.org/wiki/Tracheoesophageal_septum] +synonym: "esophagotracheal septum" EXACT [UBERON:cjm] +synonym: "tracheoesophageal ridges" RELATED [http://en.wikipedia.org/wiki/Tracheoesophageal_septum] +xref: NCIT:C34316 +xref: Tracheoesophageal:septum +is_a: UBERON:0003037 ! septum +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0003037 ! septum +intersection_of: continuous_with UBERON:0001043 ! esophagus +intersection_of: continuous_with UBERON:0003126 ! trachea +intersection_of: transformation_of UBERON:0036069 ! tracheoesophageal fold +relationship: continuous_with UBERON:0001043 ! esophagus +relationship: continuous_with UBERON:0003126 ! trachea +relationship: develops_from UBERON:0036069 ! tracheoesophageal fold +relationship: transformation_of UBERON:0036069 ! tracheoesophageal fold + +[Term] +id: UBERON:0036071 +name: diaphragmaticus muscle +def: "A skeletal muscle found in crocodilians that is analogous to the diaphragm of mammals" [http://www.ncbi.nlm.nih.gov/pubmed/22323207, https://github.com/obophenotype/uberon/issues/1229] +synonym: "diaphragmaticus" RELATED [] +is_a: UBERON:0003830 ! thoracic segment muscle +is_a: UBERON:0003831 ! respiratory system muscle + +[Term] +id: UBERON:0036072 +name: respiratory primordium epithelium +xref: EHDAA2:0004070 +is_a: UBERON:0004185 ! endodermal part of digestive tract +is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0007499 ! epithelial sac +is_a: UBERON:0009854 ! digestive tract diverticulum +is_a: UBERON:0015833 ! foregut epithelium +intersection_of: UBERON:0007499 ! epithelial sac +intersection_of: part_of UBERON:0008947 ! respiratory primordium +relationship: develops_from UBERON:0007690 {source="EHDAA2"} ! early pharyngeal endoderm +relationship: part_of UBERON:0008947 ! respiratory primordium + +[Term] +id: UBERON:0036073 +name: respiratory primordium mesenchyme +synonym: "respiratory primordium associated mesenchyme" EXACT [EHDAA2:0004071] +xref: EHDAA2:0004071 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0003104 ! mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:0008947 ! respiratory primordium +relationship: develops_from UBERON:0004873 {source="EHDAA2"} ! splanchnopleure +relationship: part_of UBERON:0008947 ! respiratory primordium + +[Term] +id: UBERON:0036074 +name: vein of vestibular aqueduct +def: "A vein that leaves the vestibule through an individual bone canal running parallel to the vestibular aqueduct up to the dura of the posterior side of the petrosa in the area of the endolymphatic sac. It then opens in the inferior petrosal sinus or the jugular bulb. The vein receives other branches from the bone, dura and sac." [http://www.ncbi.nlm.nih.gov/pubmed/42339] +synonym: "vena aqueductus vestibuli" EXACT LATIN [FMA:TA] +synonym: "vestibular aqueduct vein" EXACT [FMA:52367] +xref: FMA:52367 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0003502 ! neck blood vessel +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0009141 ! craniocervical region vein +relationship: part_of UBERON:0001641 ! transverse sinus +relationship: part_of UBERON:0007160 ! inferior petrosal sinus +relationship: tributary_of UBERON:0001641 {source="FMA"} ! transverse sinus +relationship: tributary_of UBERON:0005475 {source="FMA"} ! sigmoid sinus +relationship: tributary_of UBERON:0007160 {source="FMA"} ! inferior petrosal sinus + +[Term] +id: UBERON:0036143 +name: meningeal branch of mandibular nerve +def: "The meningeal branch of the mandibular nerve (recurrent branch, nervus spinosus) is a branch of the mandibular nerve that supplies the dura mater." [http://en.wikipedia.org/wiki/Meningeal_branch_of_the_mandibular_nerve] +synonym: "nervus spinosus" EXACT LATIN [FMA:TA] +synonym: "nervus spinosus" RELATED [http://en.wikipedia.org/wiki/Meningeal_branch_of_the_mandibular_nerve] +synonym: "ramus meningeus (Nervus mandibularis)" EXACT [FMA:53047] +synonym: "ramus meningeus nervus mandibularis" EXACT LATIN [FMA:TA] +xref: FMA:53047 +xref: http://en.wikipedia.org/wiki/Meningeal_branch_of_the_mandibular_nerve +xref: http://www.snomedbrowser.com/Codes/Details/280249002 +is_a: UBERON:0011779 ! nerve of head region +relationship: branching_part_of UBERON:0000375 {source="FMA"} ! mandibular nerve +relationship: part_of UBERON:0000375 ! mandibular nerve + +[Term] +id: UBERON:0036144 +name: incisive duct +def: "an infrequent rudimentary duct, or protrusion of the mucous membrane into the incisive canal, on either side of the anterior extremity of the nasal crest" [http://medical-dictionary.thefreedictionary.com/incisive+duct] +comment: Taxon notes notes: In domestic mammals the Ductus incisivus is considerably better developed than in man. It is not accommodated in a Canalis incisivus, as in man, but in the Fissura palatina[NOMINA ANATOMICA VETERINARIA (2005)] +synonym: "conduit incisif@fr" EXACT [FMA:77282] +synonym: "ductus incisivus" EXACT LATIN [FMA:TA] +xref: FMA:77282 +is_a: UBERON:0013686 {source="FMA"} ! anatomical conduit space +relationship: part_of UBERON:0006672 ! incisive canal + +[Term] +id: UBERON:0036145 +name: glymphatic system +def: "macroscopic waste clearance system that utilizes a unique system of perivascular tunnels, formed by astroglial cells, to promote efficient elimination of soluble proteins and metabolites from the central nervous system." [https://doi.org/10.1007/s11064-015-1581-6, https://github.com/obophenotype/uberon/issues/1260, MGI:sbello] +xref: EMAPA:37872 {source="MA:th"} +is_a: UBERON:0000467 ! anatomical system +relationship: part_of UBERON:0001016 ! nervous system + +[Term] +id: UBERON:0036146 +name: cardiopharyngeal field +def: "An region of the mesoderm that includes anterior lateral mesoderm of the first heart field plus contiguous pharyngeal mesoderm that gives rise to second-heart-field-derived regions of the heart and branchiomeric muscles." [BGEE:ann, http://www.nature.com/nature/journal/v520/n7548/full/nature14435.html#bx1] +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0007688 ! anlage + +[Term] +id: UBERON:0036147 +name: oral siphon muscle +def: "A muscle that is part of an oral siphon" [http://www.nature.com/nature/journal/v520/n7548/full/nature14435.html, https://github.com/obophenotype/uberon/issues/1265] +synonym: "buccal siphon muscle" EXACT [] +is_a: UBERON:0001630 ! muscle organ +intersection_of: UBERON:0001630 ! muscle organ +intersection_of: part_of UBERON:0009720 ! oral siphon +relationship: part_of UBERON:0009720 ! oral siphon + +[Term] +id: UBERON:0036148 +name: orovelar muscle +def: "." [https://github.com/obophenotype/uberon/issues/1264] +is_a: UBERON:0001630 ! muscle organ +relationship: attaches_to UBERON:0013653 {comment="to be checked"} ! velar skeleton + +[Term] +id: UBERON:0036149 +name: suprapubic skin +def: "Area of skin in the hypoastric region of the abdomen." [https://github.com/obophenotype/uberon/issues/1272] +synonym: "hypogastric skin" RELATED [] +is_a: UBERON:0001416 ! skin of abdomen +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0013203 ! hypogastrium +relationship: part_of UBERON:0013203 ! hypogastrium + +[Term] +id: UBERON:0036150 +name: skin appendage follicle +def: "An organ subunit in the skin that gives rise to cutaneous appendage." [https://github.com/obophenotype/uberon/issues/1266, UBERON:cjm] +synonym: "cutaneous appendage follicle" EXACT [] +synonym: "follicle" BROAD [] +synonym: "skin follicle" EXACT [] +is_a: UBERON:0000063 ! organ subunit +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: has_potential_to_develop_into UBERON:0000021 ! cutaneous appendage +relationship: part_of UBERON:0000014 ! zone of skin + +[Term] +id: UBERON:0036151 +name: diffuse placenta +def: "A placenta in which the chorionic sac meets the uterine endometrium over its entire surface. The villi of the chorion are distributed evenly throughout the surface of the chorion, and they extend into processes in the uterine endometrium." [http://www.luckyhit.net/goats001.htm, http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/structure.html] +is_a: UBERON:0001987 ! placenta +relationship: present_in_taxon NCBITaxon:35497 +relationship: present_in_taxon NCBITaxon:9788 + +[Term] +id: UBERON:0036152 +name: cotyledonary placenta +def: "A placenta in which the villi clumped together into circular patches called cotyledons. The fetal cotyledon meets with maternal regions called caruncles to form the placentome where maternal-fetal exchanges take place." [http://www.luckyhit.net/goats001.htm, http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/structure.html] +is_a: UBERON:0001987 ! placenta +relationship: present_in_taxon NCBITaxon:9845 + +[Term] +id: UBERON:0036153 +name: zonary placenta +def: "A placenta in which the chorionic villi have aggregated to form a broad band that circles about the center of the chorion. Such zones may be complete circles (such as those in dogs and cats) or incomplete (such as those in bears and seals). It is thought that zonary placentae form from diffuse placentae in which the villi at the ends regress, leaving only those in the center to function. At the edges of the zonary placenta is the hemophagous organ, which is green. The color is due to the degradation of hemoglobin into bilivirdin. This green organ provides iron for the developing fetus." [http://www.luckyhit.net/goats001.htm, http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/structure.html] +is_a: UBERON:0001987 ! placenta +relationship: present_in_taxon NCBITaxon:33554 + +[Term] +id: UBERON:0036154 +name: discoid placenta +def: "A placenta in which part of the chorion remains smooth, while the other part interacts with the endometrium to form the placenta. The maternal blood cells are in direct contact with the fetal chorion." [http://www.luckyhit.net/goats001.htm, http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/structure.html] +is_a: UBERON:0001987 ! placenta +relationship: present_in_taxon NCBITaxon:314146 +relationship: present_in_taxon NCBITaxon:9362 + +[Term] +id: UBERON:0036161 +name: epitheliochorial placenta +def: "A placenta in which all three maternal layers are retained." [http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/structure.html] +is_a: UBERON:0001987 ! placenta +relationship: present_in_taxon NCBITaxon:9845 + +[Term] +id: UBERON:0036162 +name: endotheliochorial placenta +def: "A placenta in which the only maternal layer retained is the uterine endothelium." [http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/structure.html] +is_a: UBERON:0001987 ! placenta +relationship: present_in_taxon NCBITaxon:33554 + +[Term] +id: UBERON:0036163 +name: hemochorial placenta +def: "A placenta in which no maternal layers are retained." [http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/structure.html] +is_a: UBERON:0001987 ! placenta +relationship: present_in_taxon NCBITaxon:314146 + +[Term] +id: UBERON:0036164 +name: ambient gyrus +def: "a rostral part of the parahippocampal gyrus." [NeuroNames:2072] +synonym: "AG" RELATED ABBREVIATION [DHBA:12166] +synonym: "ambiens gyrus" EXACT [DHBA:12166] +synonym: "gyrus ambiens" EXACT LATIN [DHBA:12166] +synonym: "limen insula" RELATED [NeuroNames:2072] +xref: DHBA:12166 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2072 +is_a: UBERON:0002616 {source="DHBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0034773 {source="DHBA"} ! uncus of parahippocampal gyrus + +[Term] +id: UBERON:0036167 +name: Sattler's layer +def: "Sattler's layer is layer of medium diameter blood vessels of the choroid." [http://en.wikipedia.org/wiki/Sattler%27s_layer] +comment: Some authors consider the vascular region of the choroid as being two separate layers, namely the Sattler's and Haller's layers, and some consider the lamina fusca as being either of scleral or choroidal origin. +xref: Sattler%27s:layer +is_a: UBERON:0004923 ! organ component layer +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0013399 ! blood vessel layer of choroid + +[Term] +id: UBERON:0036168 +name: Haller's layer +comment: Some authors consider the vascular region of the choroid as being two separate layers, namely the Sattler's and Haller's layers, and some consider the lamina fusca as being either of scleral or choroidal origin. +is_a: UBERON:0004923 ! organ component layer +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0013399 ! blood vessel layer of choroid + +[Term] +id: UBERON:0036172 +name: palmaris brevis +def: "The Palmaris brevis is a thin, quadrilateral muscle, placed beneath the integument of the ulnar side of the hand. It arises by tendinous fasciculi from the transverse carpal ligament and palmar aponeurosis; the fleshy fibers are inserted into the skin on the ulnar border of the palm of the hand. The muscle is innervated by the superficial branch of the ulnar nerve, containing fibers from the eighth cervical and first thoracic nerves." [http://en.wikipedia.org/wiki/Palmaris_brevis_muscle] +synonym: "musculus palmaris brevis" EXACT LATIN [FMA:TA, http://en.wikipedia.org/wiki/Palmaris_brevis_muscle] +synonym: "palmaris brevis muscle" EXACT [FMA:37381, http://en.wikipedia.org/wiki/Palmaris_brevis_muscle] +xref: FMA:37381 +xref: http://en.wikipedia.org/wiki/Palmaris_brevis_muscle +xref: http://www.snomedbrowser.com/Codes/Details/181650004 +is_a: UBERON:0014377 {source="FMA"} ! hypothenar muscle + +[Term] +id: UBERON:0036173 +name: abductor digiti minimi of hand +def: "The Abductor minimi digiti (Abductor digiti quinti) is situated on the ulnar border of the palm of the hand. It arises from the pisiform bone and from the tendon of the Flexor carpi ulnaris, and ends in a flat tendon, which divides into two slips; one is inserted into the ulnar side of the base of the first phalanx of the little finger; the other into the ulnar border of the aponeurosis of the Extensor digiti quinti proprius. In case of polydactyly it may insert to the sixth finger instead, if there is one." [http://en.wikipedia.org/wiki/Abductor_minimi_digiti_muscle_(hand)] +synonym: "abductor digiti minimi (hand)" RELATED [http://en.wikipedia.org/wiki/Abductor_minimi_digiti_muscle_(hand)] +synonym: "abductor digiti minimi manus" RELATED [http://en.wikipedia.org/wiki/Abductor_minimi_digiti_muscle_(hand)] +synonym: "abductor digiti minimi muscle of hand" EXACT [FMA:37382] +synonym: "abductor digiti minimi of hand" RELATED [http://en.wikipedia.org/wiki/Abductor_minimi_digiti_muscle_(hand)] +synonym: "abductor digiti quinti muscle (hand)" RELATED [http://en.wikipedia.org/wiki/Abductor_minimi_digiti_muscle_(hand)] +synonym: "musculus abductor digiti minimi" EXACT LATIN [FMA:TA] +xref: FMA:37382 +xref: http://en.wikipedia.org/wiki/Abductor_minimi_digiti_muscle_(hand) +xref: http://www.snomedbrowser.com/Codes/Details/181651000 +is_a: UBERON:0014377 {source="FMA"} ! hypothenar muscle + +[Term] +id: UBERON:0036174 +name: flexor digiti minimi brevis of hand +def: "The flexor digiti minimi brevis is a muscle in the hand that flexes the little finger. It lies in the same plane as the abductor digiti minimi, on its radial side." [http://en.wikipedia.org/wiki/Flexor_digiti_minimi_brevis_(hand)] +synonym: "flexor brevis minimi digiti muscle (hand)" RELATED [http://en.wikipedia.org/wiki/Flexor_digiti_minimi_brevis_(hand)] +synonym: "flexor digiti minimi brevis muscle" RELATED [http://en.wikipedia.org/wiki/Flexor_digiti_minimi_brevis_(hand)] +synonym: "flexor digiti minimi brevis muscle of hand" EXACT [FMA:37383] +synonym: "flexor digiti quinti brevis muscle (hand)" RELATED [http://en.wikipedia.org/wiki/Flexor_digiti_minimi_brevis_(hand)] +synonym: "musculus flexor digiti minimi brevis (manus)" EXACT LATIN [FMA:TA] +xref: FMA:37383 +xref: http://en.wikipedia.org/wiki/Flexor_digiti_minimi_brevis_(hand) +xref: http://www.snomedbrowser.com/Codes/Details/181653002 +is_a: UBERON:0014377 {source="FMA"} ! hypothenar muscle + +[Term] +id: UBERON:0036176 +name: opponens digiti minimi of hand +def: "The opponens minimi digiti (opponens digiti quinti in older texts) is a muscle in the hand. It is of a triangular form, and placed immediately beneath the palmaris brevis, abductor minimi digiti, and flexor brevis minimi digiti. It arises from the convexity of the hamulus of the hamate bone, and contiguous portion of the transverse carpal ligament; it is inserted into the whole length of the metacarpal bone of the little finger, along its ulnar margin." [http://en.wikipedia.org/wiki/Opponens_digiti_minimi_muscle] +synonym: "musculus opponens digiti minimi (Manus)" EXACT LATIN [FMA:TA] +synonym: "opponens digiti minimi" RELATED [http://en.wikipedia.org/wiki/Opponens_digiti_minimi_muscle] +synonym: "opponens digiti minimi (hand)" RELATED [http://en.wikipedia.org/wiki/Opponens_digiti_minimi_muscle] +synonym: "opponens digiti minimi muscle of hand" EXACT [FMA:37384] +synonym: "opponens digiti quinti" RELATED [http://en.wikipedia.org/wiki/Opponens_digiti_minimi_muscle] +xref: FMA:37384 +xref: http://en.wikipedia.org/wiki/Opponens_digiti_minimi_muscle +xref: http://www.snomedbrowser.com/Codes/Details/181652007 +is_a: UBERON:0014377 {source="FMA"} ! hypothenar muscle + +[Term] +id: UBERON:0036177 +name: nucleus recessus +def: "The fish catecholamines originate in two large aggregations of neurons: the nucleus recessus lateralis (NRL) and the nucleus recessus posterioris (NRP). The nuclei were found in the hypothalamus of numerous species, e.g., the gold fish, eel, and roach." [BTO:0003662, ISSN:1505-0297] +is_a: UBERON:0006568 {source="BTO"} ! hypothalamic nucleus + +[Term] +id: UBERON:0036185 +name: Sertoli cell barrier +def: "The blood-testis barrier (abbreviated as BTB) is a physical barrier between the blood vessels and the seminiferous tubules of the animal testes. The barrier is formed by tight connections between the Sertoli cells, which are sustentacular cells (supporting cells) of the seminiferous tubules, and nourish the spermatogonia. The barrier prevents passage of cytotoxic agents (bodies or substances that are toxic to cells) into the seminiferous tubules." [http://en.wikipedia.org/wiki/Blood-testis_barrier] +synonym: "blood testis barrier" RELATED [http://en.wikipedia.org/wiki/Blood-testis_barrier] +synonym: "blood-testes barrier" RELATED [http://en.wikipedia.org/wiki/Blood-testis_barrier] +xref: Blood-testis:barrier +xref: MESH:G06.535.166.330.100 +is_a: UBERON:0006914 ! squamous epithelium +is_a: UBERON:0014914 ! haemolymphatic fluid-testis barrier + +[Term] +id: UBERON:0036186 +name: fibroelastic connective tissue +xref: FMA:83520 +is_a: UBERON:0002521 ! elastic tissue +is_a: UBERON:0011824 ! fibrous connective tissue + +[Term] +id: UBERON:0036212 +name: intertragic incisure +def: "A surface structure that is the narrowed downward continuation of the conchal space bounded anteriorly by the borders of the tragus, posteriorly by theantitragus, and along its lower lateral margins and inferior boundary by the connection between the first two." [http://en.wikipedia.org/wiki/Incisura_anterior_auris, http://www.ncbi.nlm.nih.gov/pubmed/20082456, https://github.com/obophenotype/human-phenotype-ontology/issues/2274, UBERON:cjm] +comment: Measurement notes: The length is measured from the upper to the lower border (between tragus and antitragus) +synonym: "anterior auricular groove" RELATED [http://en.wikipedia.org/wiki/Incisura_anterior_auris] +synonym: "auricular notch" RELATED [http://en.wikipedia.org/wiki/Incisura_anterior_auris] +synonym: "incisura" BROAD [https://github.com/obophenotype/human-phenotype-ontology/issues/2274] +synonym: "incisura anterior auris" RELATED [http://en.wikipedia.org/wiki/Incisura_anterior_auris] +synonym: "incisura intertragica" EXACT LATIN [FMA:TA] +synonym: "intertragal incisure" EXACT [FMA:61175] +synonym: "intertragic incisure" EXACT [FMA:61175] +synonym: "intertragic incisure" RELATED [http://en.wikipedia.org/wiki/Incisura_anterior_auris] +synonym: "intertragic notch" EXACT [FMA:61175] +synonym: "sulcus auriculae anterior" RELATED [http://en.wikipedia.org/wiki/Incisura_anterior_auris] +xref: FMA:61175 +xref: http://en.wikipedia.org/wiki/Incisura_anterior_auris +xref: http://www.snomedbrowser.com/Codes/Details/362542005 +is_a: UBERON:0006846 ! surface groove +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0006846 ! surface groove +intersection_of: adjacent_to UBERON:0010887 ! tragus +intersection_of: adjacent_to UBERON:0016467 ! antitragus +intersection_of: part_of UBERON:0001757 ! pinna +relationship: adjacent_to UBERON:0010887 ! tragus +relationship: adjacent_to UBERON:0016467 ! antitragus +relationship: part_of UBERON:0001757 ! pinna + +[Term] +id: UBERON:0036214 +name: rectosigmoid junction +def: "An anatomical junction that is between the sigmoid colon and rectum." [https://github.com/obophenotype/uberon/issues/1319, https://www.cdc.gov/cancer/npcr/pdf/abstracting/colon.pdf, NCIT:C54188] +synonym: "rectosigmoid region" RELATED [NCIT:C54188] +xref: http://www.snomedbrowser.com/Codes/Details/245429006 +xref: NCIT:C54188 +is_a: UBERON:8410024 ! intestinal junction +intersection_of: UBERON:0007651 ! anatomical junction +intersection_of: connects UBERON:0001052 ! rectum +intersection_of: connects UBERON:0001159 ! sigmoid colon +relationship: connects UBERON:0001052 ! rectum +relationship: connects UBERON:0001159 ! sigmoid colon + +[Term] +id: UBERON:0036215 +name: anatomical surface region +def: "Material anatomical entity that forms the outermost boundary of an anatomical structure." [https://github.com/obophenotype/uberon/issues/1324] +xref: AAO:0010270 +xref: AEO:0000154 +xref: ZFA:0005594 +is_a: UBERON:0000465 ! material anatomical entity +relationship: bounding_layer_of UBERON:0000061 ! anatomical structure +relationship: part_of UBERON:0000061 ! anatomical structure + +[Term] +id: UBERON:0036216 +name: tympanic nerve +def: "The tympanic nerve (nerve of Jacobson) is a branch of the glossopharyngeal nerve found near the ear." [http://en.wikipedia.org/wiki/Tympanic_nerve] +synonym: "jacobson%27s nerve" RELATED [http://en.wikipedia.org/wiki/Tympanic_nerve] +synonym: "nerve of jacobson" RELATED [http://en.wikipedia.org/wiki/Tympanic_nerve] +synonym: "tympanic" RELATED [http://en.wikipedia.org/wiki/Tympanic_nerve] +synonym: "tympanic branch" RELATED [http://en.wikipedia.org/wiki/Tympanic_nerve] +synonym: "tympanic branch of the glossopharyngeal" RELATED [http://en.wikipedia.org/wiki/Tympanic_nerve] +xref: FMA:53480 +xref: http://www.snomedbrowser.com/Codes/Details/280289008 +xref: Tympanic:nerve +is_a: UBERON:0011779 ! nerve of head region +relationship: branching_part_of UBERON:0001649 {source="FMA"} ! glossopharyngeal nerve +relationship: part_of UBERON:0001649 ! glossopharyngeal nerve + +[Term] +id: UBERON:0036217 +name: coelomic fluid +def: "A bodily fluid that is located in the coelom." [http://www.ncbi.nlm.nih.gov/pubmed/10874572, https://github.com/obophenotype/uberon/issues/1326] +xref: BTO:0001708 +is_a: UBERON:0006314 ! bodily fluid +intersection_of: UBERON:0006314 ! bodily fluid +intersection_of: located_in UBERON:0011997 ! coelom +relationship: located_in UBERON:0011997 ! coelom + +[Term] +id: UBERON:0036218 +name: secondary prosencephalon +def: "The most anterior region of the forebrain including both the telencephalon and the hypothalamus in the prosomeric model" [https://doi.org/10.1111/dgd.12348, https://github.com/obophenotype/uberon/issues/1322] +comment: may contain the optic recess region (ORR) in the new model proposed by Yamamoto et al. 2017 (see https://www.ncbi.nlm.nih.gov/pubmed/28470718) +synonym: "SP" RELATED ABBREVIATION [DMBA:15567] +xref: DMBA:15567 +is_a: UBERON:0002616 {source="DMBA"} ! regional part of brain +relationship: part_of UBERON:0001890 {source="https://doi.org/10.1111/dgd.12348", source="DMBA"} ! forebrain + +[Term] +id: UBERON:0036219 +name: ungulate coronary band +def: "A region of the pododerm above the hoof where hair growth ends." [bgee:ANN, http://www.mondofacto.com/facts/dictionary?corium+coronae, https://github.com/obophenotype/uberon/issues/1339] +synonym: "corium coronae" EXACT LATIN [https://github.com/obophenotype/uberon/issues/1339] +synonym: "coronary band" EXACT [] +synonym: "coronary band of bovine limb" NARROW [] +synonym: "coronary band of equine forelimb" NARROW [] +synonym: "coronary band of hoof" NARROW [] +xref: http://www.snomedbrowser.com/Codes/Details/370753009 +xref: http://www.snomedbrowser.com/Codes/Details/5695009 +is_a: UBERON:0015249 ! digit skin +relationship: proximal_to UBERON:0008963 ! hoof + +[Term] +id: UBERON:0036224 +name: corticobulbar and corticospinal tracts +def: "The corticobulbar and corticospinal tracts combined." [https://github.com/obophenotype/uberon/issues/553] +synonym: "pyramidal tract" BROAD INCONSISTENT [BIRNLEX:1464, http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1320, MP:0002878] +xref: Pyramidal:tracts +is_a: UBERON:0001018 ! axon tract +relationship: part_of UBERON:0002316 {source="NIFSTD"} ! white matter + +[Term] +id: UBERON:0036225 +name: respiratory system gland +def: "Any gland that is part os the respiratory system." [UBERON:cjm] +is_a: UBERON:0002530 ! gland +intersection_of: UBERON:0002530 ! gland +intersection_of: part_of UBERON:0001004 ! respiratory system +relationship: part_of UBERON:0001004 ! respiratory system + +[Term] +id: UBERON:0036242 +name: post-embryonic notochord +def: "A notochord that has persisted beyond the embryonic stage." [UBERON:cjm] +is_a: UBERON:0002328 ! notochord +intersection_of: UBERON:0002328 ! notochord +intersection_of: part_of UBERON:0009953 ! post-embryonic organism +relationship: part_of UBERON:0009953 ! post-embryonic organism +relationship: present_in_taxon NCBITaxon:118072 +relationship: present_in_taxon NCBITaxon:7737 +relationship: present_in_taxon NCBITaxon:7746 +relationship: present_in_taxon NCBITaxon:7878 +relationship: present_in_taxon NCBITaxon:8292 + +[Term] +id: UBERON:0036243 +name: vaginal fluid +def: "Fluid that lines the vaginal walls that consists of multiple secretions that collect in the vagina from different glands." [http://www.bumc.bu.edu/sexualmedicine/physicianinformation/female-genital-anatomy/] +synonym: "vaginal discharge" RELATED [] +synonym: "vaginal secretion" RELATED [] +is_a: UBERON:0006314 ! bodily fluid +intersection_of: UBERON:0006314 ! bodily fluid +intersection_of: located_in UBERON:0000996 ! vagina +relationship: located_in UBERON:0000996 ! vagina + +[Term] +id: UBERON:0036244 +name: secretion of serous membrane +def: "A transudate found in the serous sac." [FMA:20932] +synonym: "serous fluid" BROAD [FMA:20932] +synonym: "serous sac fluid" EXACT [] +xref: FMA:20932 +is_a: UBERON:0007779 ! transudate +intersection_of: UBERON:0007779 ! transudate +intersection_of: filtered_through UBERON:0000042 ! serous membrane +relationship: filtered_through UBERON:0000042 ! serous membrane +relationship: located_in UBERON:0005906 ! serous sac + +[Term] +id: UBERON:0036245 +name: parenchyma of mammary gland +def: "Parenchymal tissue that consists of the alveoli, grape-like clusters where milk is stored, and branching ducts, which are tubular canals carrying gladular secretions." [BGEE:ann, http://www.newworldencyclopedia.org/entry/Mammary_gland, https://github.com/obophenotype/uberon/issues/1349] +synonym: "lactiferous gland parenchyma" EXACT [] +synonym: "mammary gland parenchyma" EXACT [] +synonym: "parenchyma of lactiferous gland" EXACT [] +is_a: UBERON:0000353 ! parenchyma +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000353 ! parenchyma +intersection_of: part_of UBERON:0001911 ! mammary gland +relationship: part_of UBERON:0001911 ! mammary gland + +[Term] +id: UBERON:0036246 +name: incudostapedial joint +def: "the small synovial joint connecting the inclus and the stapes, located between the lenticular process on the long crus of the incus and the head of the stapes." [http://medical-dictionary.thefreedictionary.com/incudostapedial+joint, https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2305] +synonym: "articulatio incudostapedialis" EXACT LATIN [FMA:TA] +synonym: "incudostapedial articulation" EXACT [FMA:60065] +xref: FMA:60065 +is_a: UBERON:0036248 ! joint of auditory ossicle +intersection_of: UBERON:0002217 ! synovial joint +intersection_of: connects UBERON:0015016 ! stapes endochondral element +intersection_of: connects UBERON:0015017 ! incus endochondral element +relationship: connects UBERON:0015016 ! stapes endochondral element +relationship: connects UBERON:0015017 ! incus endochondral element + +[Term] +id: UBERON:0036247 +name: incudomallear joint +def: "the saddle-shaped synovial joint connecting the incus and the malleus." [http://medical-dictionary.thefreedictionary.com/incudomallear+joint, https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2305] +synonym: "articulatio incudomallearis" EXACT LATIN [FMA:TA] +synonym: "incudomallear articulation" EXACT [FMA:60064] +synonym: "incudomalleolar joint" EXACT [FMA:60064] +xref: FMA:60064 +is_a: UBERON:0036248 ! joint of auditory ossicle +intersection_of: UBERON:0002217 ! synovial joint +intersection_of: connects UBERON:0015017 ! incus endochondral element +intersection_of: connects UBERON:0015018 ! malleus endochondral element +relationship: connects UBERON:0015017 ! incus endochondral element +relationship: connects UBERON:0015018 ! malleus endochondral element + +[Term] +id: UBERON:0036248 +name: joint of auditory ossicle +def: "Any synovial joint that connects auditory ossicles." [UBERON:cjm] +synonym: "auditory ossicle joint" EXACT [] +synonym: "auditory ossicles joint" EXACT [FMA:60063] +synonym: "joint of auditory ossicles" EXACT [FMA:60063] +xref: FMA:60063 +is_a: UBERON:0002217 ! synovial joint +intersection_of: UBERON:0002217 ! synovial joint +intersection_of: connects UBERON:0035130 ! auditory ossicle endochondral element +relationship: connects UBERON:0035130 ! auditory ossicle endochondral element +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:0036249 +name: zona pectinata of basilar membrane of cochlea +def: "The acellular membrane that forms the outer two thirds of the basilar membrane of the conchlea." [http://medical-dictionary.thefreedictionary.com/zona+pectinata, https://github.com/obophenotype/uberon/issues/1357] +synonym: "pectinate zone" BROAD [] +synonym: "pectinate zone of basilar membrane" EXACT [] +synonym: "pectinate zone of organ of corti" EXACT [] +synonym: "zona pectinata" BROAD [] +xref: BIRNLEX:2529 +xref: FMA:75710 +xref: http://linkedlifedata.com/resource/umls/id/C1184863 +xref: http://www.snomedbrowser.com/Codes/Details/368962003 +is_a: UBERON:0036250 ! zone of basilar membrane of cochlea + +[Term] +id: UBERON:0036250 +name: zone of basilar membrane of cochlea +synonym: "zone of organ of corti" RELATED [] +xref: http://www.snomedbrowser.com/Codes/Details/361065006 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005764 ! acellular membrane +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0005764 ! acellular membrane +intersection_of: part_of UBERON:0002226 ! basilar membrane of cochlea +relationship: part_of UBERON:0002226 ! basilar membrane of cochlea + +[Term] +id: UBERON:0036252 +name: interdigital space +def: "The space between the digits of the hand or foot." [NCIT:C106201] +xref: NCIT:C106201 +is_a: UBERON:0000464 ! anatomical space +relationship: adjacent_to UBERON:0002544 {minCardinality="2", maxCardinality="2"} ! digit + +[Term] +id: UBERON:0036253 +name: orifice of skull +synonym: "cranial orifice" EXACT [FMA:53133] +synonym: "skull orifice" EXACT [FMA:53133] +xref: FMA:53133 +is_a: UBERON:0000161 ! orifice +intersection_of: UBERON:0000161 ! orifice +intersection_of: part_of UBERON:0003129 ! skull +relationship: part_of UBERON:0003129 ! skull + +[Term] +id: UBERON:0036254 +name: piriform aperture +def: "A pear-shaped bony inlet comprising the most anterior and narrowest bony portion of the nasal airway." [http://en.wikipedia.org/wiki/Anterior_nasal_aperture, http://www.ncbi.nlm.nih.gov/pubmed/17082934, MGI:anna] +synonym: "apertura piriformis" EXACT LATIN [FMA:TA] +synonym: "apertura piriformis" RELATED [http://en.wikipedia.org/wiki/Anterior_nasal_aperture] +synonym: "piriform aperture" RELATED [http://en.wikipedia.org/wiki/Anterior_nasal_aperture] +synonym: "pyriform aperture" RELATED [http://en.wikipedia.org/wiki/Anterior_nasal_aperture] +xref: FMA:53137 +xref: http://en.wikipedia.org/wiki/Anterior_nasal_aperture +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0036253 ! orifice of skull +relationship: part_of UBERON:0006813 ! nasal skeleton + +[Term] +id: UBERON:0036255 +name: interoceptive system +def: "The system that is responsible for sensing the internal state of the body." [http://en.wikipedia.org/wiki/Interoception, https://github.com/obophenotype/uberon/issues/1385] +xref: http://en.wikipedia.org/wiki/Interoception +is_a: UBERON:0001032 ! sensory system + +[Term] +id: UBERON:0036256 +name: iliac lymph sac +def: "An embryonic lymph sac that forms near the junction of the iliac veins with the posterior cardinal veins." [https://discovery.lifemapsc.com/library/review-of-medical-embryology/chapter-128-development-of-the-lymphatic-system, https://github.com/obophenotype/uberon/issues/1383] +xref: NCIT:C34191 +is_a: UBERON:0034953 {source="NCIT"} ! embryonic lymph sac + +[Term] +id: UBERON:0036259 +name: cardial lymph propulsor +def: "A lymphatic propulsor that lies tightly against the truncus arteriosus, the major outflow tract of the amphibian heart." [http://jap.physiology.org/content/115/3/297, PMCID:PMC1233883] +is_a: UBERON:0015229 ! accessory circulatory organ + +[Term] +id: UBERON:0036260 +name: embryonic cisterna chyli +def: "An embryonic lymph sac that is dorsal to the retroperitoneal lymph sac, at the level of the adrenal glands." [https://discovery.lifemapsc.com/library/review-of-medical-embryology/chapter-128-development-of-the-lymphatic-system, https://github.com/obophenotype/uberon/issues/1383] +synonym: "future upper portion of the cisterna chyli" RELATED [] +xref: EHDAA2:0000253 +is_a: UBERON:0034953 {source="cjm"} ! embryonic lymph sac + +[Term] +id: UBERON:0036261 +name: accessory lymph sac +def: "An extracoelomic lateral abdominal space that accumulates body fluid." [http://www.ncbi.nlm.nih.gov/pubmed/3958676] +is_a: UBERON:0007499 ! epithelial sac +relationship: part_of UBERON:0000916 ! abdomen +relationship: present_in_taxon NCBITaxon:65997 + +[Term] +id: UBERON:0036262 +name: uterine ligament +def: "Any of the eight ligaments pertaining to the uterus including the anterior, posterior, lateral, sacro-uterine and round ligaments." [NCIT:C61360] +xref: http://www.snomedbrowser.com/Codes/Details/272668006 +xref: NCIT:C61360 +is_a: UBERON:0000211 ! ligament +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0000211 ! ligament +intersection_of: part_of UBERON:0000002 ! uterine cervix +relationship: part_of UBERON:0000002 ! uterine cervix + +[Term] +id: UBERON:0036263 +name: supraglottic part of larynx +def: "The upper part of the larynx, including the epiglottis; the area above the vocal cords." [NCIT:C12279] +synonym: "supraglottic larynx" EXACT [FMA:55476] +synonym: "supraglottis" EXACT [NCIT:C12279] +xref: FMA:55476 +xref: http://www.snomedbrowser.com/Codes/Details/361953009 +xref: NCIT:C12279 +is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract +relationship: part_of UBERON:0001737 {source="FMA"} ! larynx + +[Term] +id: UBERON:0036264 +name: zygomaticotemporal nerve +def: "The zygomaticotemporal nerve or zygomaticotemporal branch (temporal branch) is derived from the maxillary branch of the trigeminal nerve (Cranial nerve V). It runs along the lateral wall of the orbit in a groove in the zygomatic bone, receives a branch of communication from the lacrimal, and passes through zygomaticotemporal foramen in the zygomatic bone to enter the temporal fossa. It ascends between the bone, and substance of the Temporalis muscle, pierces the temporal fascia about 2.5 cm. above the zygomatic arch, and is distributed to the skin of the side of the forehead, and communicates with the facial nerve and with the auriculotemporal branch of the mandibular nerve. As it pierces the temporal fascia, it gives off a slender twig, which runs between the two layers of the fascia to the lateral angle of the orbit." [http://en.wikipedia.org/wiki/Zygomaticotemporal_nerve] +synonym: "ramus zygomaticotemporalis (Nervus zygomaticus)" EXACT [FMA:52972] +synonym: "ramus zygomaticotemporalis nervus zygomatici" EXACT LATIN [FMA:TA] +synonym: "zygomaticotemporal" RELATED [http://en.wikipedia.org/wiki/Zygomaticotemporal_nerve] +synonym: "zygomaticotemporal branch" RELATED [http://en.wikipedia.org/wiki/Zygomaticotemporal_nerve] +synonym: "zygomaticotemporal branch of zygomatic nerve" EXACT [FMA:52972] +xref: FMA:52972 +xref: http://www.snomedbrowser.com/Codes/Details/280243001 +xref: Zygomaticotemporal:nerve +is_a: UBERON:0011779 ! nerve of head region +relationship: branching_part_of UBERON:0000377 ! maxillary nerve +relationship: part_of UBERON:0000377 ! maxillary nerve + +[Term] +id: UBERON:0036265 +name: conjunctival papilla +synonym: "conjunctival papillae" EXACT PLURAL [] +xref: http://www.snomedbrowser.com/Codes/Details/280681004 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:2001995 ! papilla +intersection_of: UBERON:2001995 ! papilla +intersection_of: part_of UBERON:0001811 ! conjunctiva +relationship: part_of UBERON:0001811 ! conjunctiva + +[Term] +id: UBERON:0036266 +name: pars interarticularis of vertebra +def: "The part of vertebra located between the inferior and superior articular processes of the facet joint." [http://en.wikipedia.org/wiki/Pars_interarticularis] +synonym: "pars interarticularis" EXACT [] +xref: http://www.snomedbrowser.com/Codes/Details/705098005 +xref: Pars:interarticularis +is_a: UBERON:0004765 ! skeletal element +relationship: part_of UBERON:0002412 ! vertebra + +[Term] +id: UBERON:0036267 +name: vulval vein +xref: http://www.snomedbrowser.com/Codes/Details/279975006 +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0000997 ! mammalian vulva +relationship: drains UBERON:0000997 ! mammalian vulva + +[Term] +id: UBERON:0036268 +name: pelvic vein +xref: http://www.snomedbrowser.com/Codes/Details/13152008 +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0002355 ! pelvic region of trunk +relationship: drains UBERON:0002355 ! pelvic region of trunk + +[Term] +id: UBERON:0036269 +name: penis blood vessel +synonym: "penis vasculature" RELATED [] +synonym: "vasculature of penis" RELATED [EMAPA:30807] +xref: EMAPA:30807 +xref: http://www.snomedbrowser.com/Codes/Details/363673006 +is_a: UBERON:0001981 ! blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: connected_to UBERON:0000989 ! penis +relationship: connected_to UBERON:0000989 ! penis + +[Term] +id: UBERON:0036270 +name: epihyoideum +def: "an elastic ligament lying between the lateral pharyngeal muscles and the thyroglossus muscle" [PMCID:PMC1570911] +is_a: UBERON:0000211 ! ligament +relationship: connected_to UBERON:0000933 ! pharyngeal muscle + +[Term] +id: UBERON:0036271 +name: omphalopleure +def: "A fetal membrane, part of the yolk sac, that appears during some placentation processes." [BGEE:ANiknejad, http://www.ncbi.nlm.nih.gov/pubmed/10761048, http://www.ncbi.nlm.nih.gov/pubmed/29416852, https://github.com/obophenotype/uberon/issues/1426] +is_a: UBERON:0000158 ! membranous layer +relationship: part_of UBERON:0001040 ! yolk sac + +[Term] +id: UBERON:0036272 +name: bilaminar omphalopleure +def: "A non-vascular omphalopleure that supports uptake and metabolism of nutrients." [BGEE:ANiknejad, http://www.ncbi.nlm.nih.gov/pubmed/10761048, http://www.ncbi.nlm.nih.gov/pubmed/29416852, https://github.com/obophenotype/uberon/issues/1426] +synonym: "non-vascular bilaminar omphalopleure" EXACT [] +is_a: UBERON:0036271 ! omphalopleure + +[Term] +id: UBERON:0036273 +name: trilaminar omphalopleure +def: "A vascular omphalopleure that is important for respiration." [BGEE:ANiknejad, http://www.ncbi.nlm.nih.gov/pubmed/10761048, http://www.ncbi.nlm.nih.gov/pubmed/29416852, https://github.com/obophenotype/uberon/issues/1426] +synonym: "choriovitelline membrane" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/10761048] +synonym: "vascular TOM" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/10761048] +synonym: "vascular trilaminar omphalopleure" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/10761048] +is_a: UBERON:0036271 ! omphalopleure + +[Term] +id: UBERON:0036274 +name: tonsillar pillar +def: "The anterior and posterior borders of the tonsillar fossa. They are composed of muscle tissue." [NCIT:C12236] +comment: Consider merge with palatopharyngeus +xref: NCIT:C12236 +is_a: UBERON:0002385 ! muscle tissue +relationship: part_of UBERON:0002372 {source="NCIT"} ! tonsil + +[Term] +id: UBERON:0036285 +name: wall of left ventricle +def: "Wall of ventricle which is continuous with the wall of aorta." [FMA:9556] +synonym: "left ventricular wall" EXACT [FMA:9556] +synonym: "pared del ventrC-culo izquierdo@es" EXACT [FMA:9556] +xref: FMA:9556 +is_a: UBERON:0004784 {source="FMA"} ! heart ventricle wall +intersection_of: UBERON:0004784 ! heart ventricle wall +intersection_of: part_of UBERON:0002084 ! heart left ventricle +relationship: part_of UBERON:0002084 {source="FMA"} ! heart left ventricle + +[Term] +id: UBERON:0036286 +name: wall of right ventricle +def: "Wall of ventricle which is continuous with the wall of pulmonary trunk." [FMA:9533] +synonym: "pared del ventrC-culo derecho@es" EXACT [FMA:9533] +synonym: "right ventricular wall" EXACT [FMA:9533] +xref: FMA:9533 +is_a: UBERON:0004784 {source="FMA"} ! heart ventricle wall +intersection_of: UBERON:0004784 ! heart ventricle wall +intersection_of: part_of UBERON:0002080 ! heart right ventricle +relationship: part_of UBERON:0002080 {source="FMA"} ! heart right ventricle + +[Term] +id: UBERON:0036288 +name: anterior wall of left ventricle +xref: FMA:9560 +is_a: UBERON:0036285 ! wall of left ventricle +intersection_of: UBERON:0004784 ! heart ventricle wall +intersection_of: in_anterior_side_of UBERON:0002084 ! heart left ventricle +relationship: in_anterior_side_of UBERON:0002084 ! heart left ventricle + +[Term] +id: UBERON:0036289 +name: anterior wall of right ventricle +def: "Region of wall of right ventricle which is continuous with the lateral and septal walls of right ventricle." [FMA:9553] +xref: FMA:9553 +is_a: UBERON:0036286 ! wall of right ventricle +intersection_of: UBERON:0004784 ! heart ventricle wall +intersection_of: in_anterior_side_of UBERON:0002080 ! heart right ventricle +relationship: in_anterior_side_of UBERON:0002080 ! heart right ventricle + +[Term] +id: UBERON:0036290 +name: myocardium of anterior wall of left ventricle +xref: FMA:87177 +is_a: UBERON:0006566 ! left ventricle myocardium +intersection_of: UBERON:0002349 ! myocardium +intersection_of: part_of UBERON:0036288 ! anterior wall of left ventricle +relationship: part_of UBERON:0036288 ! anterior wall of left ventricle + +[Term] +id: UBERON:0036291 +name: myocardium of anterior wall of right ventricle +xref: FMA:260877 +is_a: UBERON:0006567 ! right ventricle myocardium +intersection_of: UBERON:0002349 ! myocardium +intersection_of: part_of UBERON:0036289 ! anterior wall of right ventricle +relationship: part_of UBERON:0036289 ! anterior wall of right ventricle + +[Term] +id: UBERON:0036292 +name: adnexa of uterus +def: "The fallopian tubes and ovaries." [http://en.wikipedia.org/wiki/Adnexa_of_uterus] +synonym: "adnexa uteri" RELATED [http://en.wikipedia.org/wiki/Adnexa_of_uterus] +synonym: "uterine adnexa" EXACT [FMA:265256] +xref: FMA:265256 +xref: http://en.wikipedia.org/wiki/Adnexa_of_uterus +xref: http://www.snomedbrowser.com/Codes/Details/361373008 +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0000995 ! uterus + +[Term] +id: UBERON:0036293 +name: oral frenulum +def: "A small fold of mucous membrane in the mouth, connecting either the tongue or the lip to the mouth mucosa." [https://github.com/obophenotype/human-phenotype-ontology/issues/3336, UBERON:cjm] +synonym: "frenulum" BROAD [] +synonym: "oral frenula" EXACT PLURAL [HP:0000190] +synonym: "oral frenulum" EXACT [HP:0000190] +synonym: "oral frenum" RELATED [] +xref: http://www.snomedbrowser.com/Codes/Details/303771008 +is_a: UBERON:0003729 ! mouth mucosa +union_of: UBERON:0006689 ! frenulum of tongue +union_of: UBERON:0016910 ! frenulum of lip + +[Term] +id: UBERON:0036294 +name: mucosa of lip +def: "A mucosa that is part of a lip region [Automatically generated definition]." [OBOL:automatic] +synonym: "labial mucosa" EXACT [UBERON:cjm] +xref: NCIT:C12226 +is_a: UBERON:0003729 ! mouth mucosa +is_a: UBERON:0013754 ! integumentary system layer +intersection_of: UBERON:0000344 ! mucosa +intersection_of: part_of UBERON:0001833 ! lip +relationship: part_of UBERON:0001833 ! lip + +[Term] +id: UBERON:0036295 +name: renal pelvis/ureter +def: "The upper tract of the renal system. The renal pelvis is the large cavity in the middle of each kidney. Urine drains from each kidney through a long tube called the ureter, into the bladder, where it is stored until it is passed from the body through the urethra." [NCIT:C54419] +synonym: "renal pelvis and ureter" EXACT [] +synonym: "renal pelvis plus ureter" EXACT [] +xref: NCIT:C54419 +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0011143 {source="NCIT"} ! upper urinary tract + +[Term] +id: UBERON:0036300 +name: tributary of central retinal vein +synonym: "central retinal venous tributary" EXACT [FMA:51892] +xref: FMA:51892 +xref: http://www.snomedbrowser.com/Codes/Details/731368004 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0001638 ! vein +intersection_of: tributary_of UBERON:0001673 ! central retinal vein +relationship: part_of UBERON:0001673 ! central retinal vein +relationship: tributary_of UBERON:0001673 ! central retinal vein + +[Term] +id: UBERON:0036301 +name: vasculature of spleen +xref: FMA:225251 +xref: http://www.snomedbrowser.com/Codes/Details/297287005 +is_a: UBERON:0002201 ! vasculature of trunk +is_a: UBERON:0006876 {source="FMA"} ! vasculature of organ +intersection_of: UBERON:0002049 ! vasculature +intersection_of: part_of UBERON:0002106 ! spleen +relationship: part_of UBERON:0002106 ! spleen + +[Term] +id: UBERON:0036302 +name: vasculature of central nervous system plus retina +is_a: UBERON:0002049 ! vasculature +union_of: UBERON:0004864 ! vasculature of retina +union_of: UBERON:0036303 ! vasculature of central nervous system + +[Term] +id: UBERON:0036303 +name: vasculature of central nervous system +xref: FMA:259905 +is_a: UBERON:0036302 ! vasculature of central nervous system plus retina +intersection_of: UBERON:0002049 ! vasculature +intersection_of: part_of UBERON:0001017 ! central nervous system +relationship: part_of UBERON:0001017 ! central nervous system + +[Term] +id: UBERON:0036304 +name: anatomical border +def: "An anatomical structure that is located along the line dividing two regions of an anatomical structure." [UBERON:cjm] +is_a: UBERON:0000061 ! anatomical structure + +[Term] +id: UBERON:0036328 +name: wall of coronary artery +synonym: "coronary arterial wall" EXACT [FMA:14179] +xref: FMA:14179 +is_a: UBERON:0000415 {source="FMA"} ! artery wall +is_a: UBERON:0037144 ! wall of heart +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0001621 ! coronary artery +relationship: part_of UBERON:0001621 {source="FMA"} ! coronary artery + +[Term] +id: UBERON:0036337 +name: wall of appendix +synonym: "appendix wall" EXACT [FMA:14621] +synonym: "wall of vermiform appendix" EXACT [FMA:14621] +xref: FMA:14621 +is_a: UBERON:0001169 ! wall of large intestine +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0001154 ! vermiform appendix +relationship: part_of UBERON:0001154 {source="FMA"} ! vermiform appendix + +[Term] +id: UBERON:0036343 +name: wall of gallbladder +synonym: "gallbladder wall" EXACT [FMA:14657] +xref: FMA:14657 +is_a: UBERON:0003697 ! abdominal wall +is_a: UBERON:0004119 ! endoderm-derived structure +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0002110 ! gall bladder +relationship: part_of UBERON:0002110 {source="FMA"} ! gall bladder + +[Term] +id: UBERON:0036351 +name: wall of brachiocephalic artery +synonym: "brachiocephalic arterial wall" EXACT [FMA:15089] +xref: FMA:15089 +is_a: UBERON:0000415 {source="FMA"} ! artery wall +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0001529 ! brachiocephalic artery +relationship: part_of UBERON:0001529 {source="FMA"} ! brachiocephalic artery + +[Term] +id: UBERON:0036352 +name: wall of subclavian artery +synonym: "subclavian arterial wall" EXACT [FMA:15090] +xref: FMA:15090 +is_a: UBERON:0000415 {source="FMA"} ! artery wall +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0001533 ! subclavian artery +relationship: part_of UBERON:0001533 {source="FMA"} ! subclavian artery + +[Term] +id: UBERON:0036362 +name: wall of anal canal +synonym: "anal canal wall" EXACT [FMA:15704] +xref: FMA:15704 +is_a: UBERON:0001169 ! wall of large intestine +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0000159 ! anal canal +intersection_of: part_of UBERON:0001007 ! digestive system +relationship: part_of UBERON:0000159 {source="FMA"} ! anal canal + +[Term] +id: UBERON:0036375 +name: wall of right ureter +synonym: "right ureteral wall" EXACT [FMA:15889] +xref: FMA:15889 +is_a: UBERON:0009916 {source="FMA"} ! wall of ureter +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0001222 ! right ureter +relationship: part_of UBERON:0001222 {source="FMA"} ! right ureter + +[Term] +id: UBERON:0036376 +name: wall of left ureter +synonym: "left ureteral wall" EXACT [FMA:15890] +xref: FMA:15890 +is_a: UBERON:0009916 {source="FMA"} ! wall of ureter +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0001223 ! left ureter +relationship: part_of UBERON:0001223 {source="FMA"} ! left ureter + +[Term] +id: UBERON:0036422 +name: wall of pulmonary artery +synonym: "pulmonary arterial wall" EXACT [FMA:18211] +xref: FMA:18211 +is_a: UBERON:0000415 {source="FMA"} ! artery wall +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0002012 ! pulmonary artery +relationship: part_of UBERON:0002012 {source="FMA"} ! pulmonary artery + +[Term] +id: UBERON:0036441 +name: wall of uterine tube +synonym: "uterine tube wall" EXACT [FMA:18303] +synonym: "wall of fallopian tube" EXACT [FMA:18303] +synonym: "wall of oviduct" EXACT [FMA:18303] +xref: FMA:18303 +is_a: UBERON:0000060 {source="FMA"} ! anatomical wall +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0003889 ! fallopian tube +relationship: part_of UBERON:0003889 {source="FMA"} ! fallopian tube + +[Term] +id: UBERON:0036521 +name: wall of urethra +synonym: "urethral wall" EXACT [FMA:19779] +xref: FMA:19779 +is_a: UBERON:0000060 {source="FMA"} ! anatomical wall +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0000057 ! urethra +relationship: part_of UBERON:0000057 {source="FMA"} ! urethra + +[Term] +id: UBERON:0036523 +name: wall of vagina +synonym: "vaginal wall" EXACT [FMA:19971] +xref: FMA:19971 +is_a: UBERON:0000060 {source="FMA"} ! anatomical wall +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0000996 ! vagina +relationship: part_of UBERON:0000996 {source="FMA"} ! vagina + +[Term] +id: UBERON:0036553 +name: wall of synovial tendon sheath +xref: FMA:231590 +is_a: UBERON:0000042 {source="FMA"} ! serous membrane +is_a: UBERON:0000060 ! anatomical wall +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0000304 ! tendon sheath +relationship: part_of UBERON:0000304 {source="FMA"} ! tendon sheath + +[Term] +id: UBERON:0036654 +name: wall of lateral ventricle +xref: FMA:242772 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0036661 ! wall of ventricular system of brain +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0002285 ! telencephalic ventricle +relationship: part_of UBERON:0002285 {source="FMA"} ! telencephalic ventricle + +[Term] +id: UBERON:0036655 +name: wall of cerebral aqueduct +xref: FMA:242774 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0036661 ! wall of ventricular system of brain +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0002289 ! midbrain cerebral aqueduct +relationship: part_of UBERON:0002289 {source="FMA"} ! midbrain cerebral aqueduct + +[Term] +id: UBERON:0036656 +name: wall of third ventricle +xref: FMA:242776 +is_a: UBERON:0036661 ! wall of ventricular system of brain +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0002286 ! third ventricle +relationship: part_of UBERON:0002286 {source="FMA"} ! third ventricle + +[Term] +id: UBERON:0036657 +name: wall of fourth ventricle +xref: FMA:242778 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0036661 ! wall of ventricular system of brain +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0002422 ! fourth ventricle +relationship: part_of UBERON:0002422 {source="FMA"} ! fourth ventricle + +[Term] +id: UBERON:0036658 +name: wall of central canal of spinal cord +synonym: "wall of central canal" EXACT [FMA:242780] +xref: FMA:242780 +is_a: UBERON:0000060 ! anatomical wall +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005358 {source="FMA"} ! ventricle of nervous system +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0002291 ! central canal of spinal cord +relationship: part_of UBERON:0002291 {source="FMA"} ! central canal of spinal cord + +[Term] +id: UBERON:0036661 +name: wall of ventricular system of brain +xref: FMA:242841 +is_a: UBERON:0000060 ! anatomical wall +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005358 {source="FMA"} ! ventricle of nervous system +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0005282 ! ventricular system of brain +relationship: part_of UBERON:0005282 {source="FMA"} ! ventricular system of brain + +[Term] +id: UBERON:0036925 +name: wall of eyeball +synonym: "eyeball wall" EXACT [FMA:58098] +xref: FMA:58098 +is_a: UBERON:0000060 {source="FMA"} ! anatomical wall +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0010230 ! eyeball of camera-type eye +relationship: part_of UBERON:0010230 {source="FMA"} ! eyeball of camera-type eye + +[Term] +id: UBERON:0036990 +name: wall of pharyngotympanic tube +synonym: "pharyngotympanic tube wall" EXACT [FMA:60069] +xref: FMA:60069 +is_a: UBERON:0000060 {source="FMA"} ! anatomical wall +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0002393 ! pharyngotympanic tube +relationship: part_of UBERON:0002393 {source="FMA"} ! pharyngotympanic tube + +[Term] +id: UBERON:0037089 +name: wall of orbit +synonym: "orbit wall" EXACT [FMA:63144] +xref: FMA:63144 +is_a: UBERON:0000060 ! anatomical wall +is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system +is_a: UBERON:0010313 ! neural crest-derived structure +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0001697 ! orbit of skull +relationship: part_of UBERON:0001697 {source="FMA"} ! orbit of skull + +[Term] +id: UBERON:0037094 +name: wall of common carotid artery +synonym: "common carotid arterial wall" EXACT [FMA:66284] +xref: FMA:66284 +is_a: UBERON:0000415 {source="FMA"} ! artery wall +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0001530 ! common carotid artery plus branches +relationship: part_of UBERON:0001530 {source="FMA"} ! common carotid artery plus branches + +[Term] +id: UBERON:0037144 +name: wall of heart +def: "wall of organ which has as its parts the endocardium, myocardium , epicardium, and the cardiac septum, surrounded by the pericardial sac proper and is continuous with the walls of the systemic and pulmonary arterial and venous trees." [FMA:7274] +synonym: "cardiac wall" EXACT [FMA:7274] +xref: FMA:7274 +is_a: UBERON:0000060 {source="FMA"} ! anatomical wall +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0000948 ! heart +relationship: attaches_to UBERON:0002406 {source="FMA"} ! pericardial sac +relationship: attaches_to UBERON:0004292 {source="FMA"} ! cardiac skeleton +relationship: part_of UBERON:0000948 {source="FMA"} ! heart + +[Term] +id: UBERON:0037191 +name: wall of membranous labyrinth +synonym: "membranous labyrinth wall" EXACT [FMA:79837] +xref: FMA:79837 +is_a: UBERON:0000060 {source="FMA"} ! anatomical wall +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0001849 ! membranous labyrinth +relationship: part_of UBERON:0001849 {source="FMA"} ! membranous labyrinth + +[Term] +id: UBERON:0037237 +name: wall of lacrimal duct +synonym: "lacrimal ductal wall" EXACT [FMA:85375] +xref: FMA:85375 +is_a: UBERON:0000060 {source="FMA"} ! anatomical wall +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0001850 ! lacrimal drainage system +relationship: part_of UBERON:0001850 {source="FMA"} ! lacrimal drainage system + +[Term] +id: UBERON:0037447 +name: wall of male urethra +synonym: "male urethral wall" EXACT [FMA:19676] +xref: FMA:19676 +is_a: UBERON:0036521 {source="FMA"} ! wall of urethra +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0001333 ! male urethra +relationship: part_of UBERON:0001333 {source="FMA"} ! male urethra + +[Term] +id: UBERON:0037455 +name: wall of female urethra +synonym: "female urethral wall" EXACT [FMA:19780] +xref: FMA:19780 +is_a: UBERON:0036521 {source="FMA"} ! wall of urethra +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: part_of UBERON:0001334 ! female urethra +relationship: part_of UBERON:0001334 {source="FMA"} ! female urethra + +[Term] +id: UBERON:0037458 +name: hair of neck +synonym: "neck hair" EXACT [FMA:54242] +xref: FMA:54242 +is_a: UBERON:0001037 ! strand of hair +intersection_of: UBERON:0001037 ! strand of hair +intersection_of: part_of UBERON:0000974 ! neck +relationship: part_of UBERON:0000974 ! neck + +[Term] +id: UBERON:0037459 +name: hair of limb +synonym: "limb hair" EXACT [FMA:54243] +xref: FMA:54243 +is_a: UBERON:0001037 ! strand of hair +intersection_of: UBERON:0001037 ! strand of hair +intersection_of: part_of UBERON:0002101 ! limb +relationship: part_of UBERON:0002101 ! limb + +[Term] +id: UBERON:0037461 +name: primary hair +def: "very thin, soft, usually unpigmented, downy hair that is sometimes found on the body of a fetal or new-born human." [https://en.wikipedia.org/wiki/Lanugo] +comment: It is replaced by hair covering the same surfaces, which is called vellus hair. +synonym: "downy hair" EXACT [FMA:70667] +synonym: "lanugo" EXACT LATIN [FMA:TA] +xref: FMA:70667 +is_a: UBERON:0001037 ! strand of hair + +[Term] +id: UBERON:0037462 +name: vellus hair +def: "short, thin, slight-colored, and barely noticeable hair that develops on most of a person's body during childhood." [https://en.wikipedia.org/wiki/Vellus_hair] +comment: Vellus hair is differentiated from the more visible terminal or androgenic hair, which develops only during and after puberty, usually to a greater extent on men than it does on women. +synonym: "peach fuzz" RELATED [https://en.wikipedia.org/wiki/Vellus_hair] +xref: FMA:70668 +is_a: UBERON:0001037 ! strand of hair +disjoint_from: UBERON:0037463 ! terminal hair + +[Term] +id: UBERON:0037463 +name: terminal hair +def: "thick and long hair, as compared with vellus hair growing elsewhere." [https://en.wikipedia.org/wiki/Terminal_hair] +xref: FMA:70669 +is_a: UBERON:0001037 ! strand of hair + +[Term] +id: UBERON:0037464 +name: androgenic hair +def: "The terminal hair that develops on the human body during and after puberty. It is differentiated from the head hair and less visible vellus hair, which is much finer and lighter in color." [https://orcid.org/0000-0002-2825-0621] +comment: The growth of androgenic hair is related to the level of androgens (often referred to as male hormones) and the density of androgen receptors in the dermal papillae. Both must reach a threshold for the proliferation of hair follicle cells +synonym: "body hair" RELATED [https://orcid.org/0000-0002-2825-0621] +is_a: UBERON:0037463 ! terminal hair + +[Term] +id: UBERON:0037465 +name: catagen hair +comment: TODO: axiomatize using GO +xref: FMA:70717 +is_a: UBERON:0001037 ! strand of hair + +[Term] +id: UBERON:0037466 +name: telogen hair +comment: TODO: axiomatize using GO +xref: FMA:70718 +is_a: UBERON:0001037 ! strand of hair + +[Term] +id: UBERON:0037467 +name: anagen hair +comment: TODO: axiomatize using GO +xref: FMA:70716 +is_a: UBERON:0001037 {source="FMA"} ! strand of hair + +[Term] +id: UBERON:0037468 +name: waist +def: "The part of the human abdomen below the ribs and above the hips, often narrower than the areas above and below." [https://en.wikipedia.org/w/index.php?title=Waist&oldid=987321825, https://orcid.org/0000-0002-2825-0621] +xref: FMA:228775 +is_a: UBERON:0009569 {source="FMA"} ! subdivision of trunk +relationship: part_of UBERON:0000916 {source="https://orcid.org/0000-0002-2825-0621"} ! abdomen + +[Term] +id: UBERON:0037480 +name: supramammary lymph node +synonym: "supramammary node" EXACT [FMA:12785] +xref: FMA:12785 +is_a: UBERON:0007644 {source="FMA"} ! thoracic lymph node + +[Term] +id: UBERON:0037494 +name: paracardial gastric lymph node +def: "Gastric lymph node located around the cardia of stomach." [FMA:12803] +synonym: "aJCC level 16" EXACT [FMA:12803] +synonym: "lymph node ring of cardia of stomach" EXACT [FMA:12803] +synonym: "paracardial gastric node" EXACT [FMA:12803] +synonym: "paracardial lymph node" EXACT [FMA:12803] +xref: FMA:12803 +is_a: UBERON:0015863 {source="FMA"} ! gastric lymph node + +[Term] +id: UBERON:0037500 +name: subscapular axillary lymph node +def: "An axillary lymph node that is placed along the lower margin of the posterior wall of the axilla in the course of the subscapular artery." [http://en.wikipedia.org/wiki/Subscapular_axillary_lymph_nodes] +synonym: "nodus lymphaticus subscapularis axillae" EXACT [FMA:14187] +synonym: "posterior axillary node" EXACT [FMA:14187] +synonym: "subcapsular node" EXACT [FMA:14187] +xref: FMA:14187 +is_a: UBERON:0037560 {source="FMA"} ! superficial axillary lymph node + +[Term] +id: UBERON:0037501 +name: pectoral axillary lymph node +def: "An axiallary lymph node along the lower border of the Pectoralis minor, in relation with the lateral thoracic artery. Their afferents drain the skin and muscles of the anterior and lateral thoracic walls, and the central and lateral parts of the mamma; their efferents pass partly to the central and partly to the subclavicular groups of axillary glands." [http://en.wikipedia.org/wiki/Pectoral_axillary_lymph_nodes] +synonym: "anterior axillary lymph node" EXACT [FMA:14188, http://en.wikipedia.org/wiki/Pectoral_axillary_lymph_nodes] +synonym: "nodus lymphaticus pectoralis axillae" EXACT [FMA:14188] +synonym: "pectoral lymph node" EXACT [FMA:14188] +xref: FMA:14188 +is_a: UBERON:0037560 {source="FMA"} ! superficial axillary lymph node + +[Term] +id: UBERON:0037502 +name: central axillary lymph node +def: "An axillary lymph node that is imbedded in the adipose tissue near the base of the axilla." [http://en.wikipedia.org/wiki/Central_lymph_nodes] +synonym: "central node" EXACT [FMA:14189] +synonym: "nodus lymphaticus centralis axillae" EXACT [FMA:14189] +xref: FMA:14189 +is_a: UBERON:0037560 {source="FMA"} ! superficial axillary lymph node + +[Term] +id: UBERON:0037503 +name: apical axillary lymph node +def: "An axillary lymph node that is situated partly posterior to the upper portion of the Pectoralis minor and partly above the upper border of this muscle." [http://en.wikipedia.org/wiki/Apical_lymph_nodes] +synonym: "nodus lymphaticus apicalis axillae" EXACT [FMA:14190] +xref: FMA:14190 +is_a: UBERON:0037560 {source="FMA"} ! superficial axillary lymph node + +[Term] +id: UBERON:0037514 +name: intermediate mesenteric lymph node +synonym: "central mesenteric lymph node" EXACT [FMA:16609] +synonym: "central superior mesenteric lymph node" EXACT [FMA:16609] +synonym: "intermediate lymph node of small intestine" EXACT [FMA:16609] +synonym: "intermediate mesenteric node" EXACT [FMA:16609] +xref: FMA:16609 +is_a: UBERON:0002509 {source="FMA"} ! mesenteric lymph node + +[Term] +id: UBERON:0037515 +name: juxta-arterial mesenteric lymph node +synonym: "juxta-arterial mesenteric node" EXACT [FMA:16610] +xref: FMA:16610 +is_a: UBERON:0002509 {source="FMA"} ! mesenteric lymph node + +[Term] +id: UBERON:0037518 +name: epicolic lymph node +synonym: "epicolic node" EXACT [FMA:16613] +xref: FMA:16613 +is_a: UBERON:0039168 {source="FMA"} ! colic lymph node + +[Term] +id: UBERON:0037521 +name: preterminal colic lymph node +synonym: "preterminal colic node" EXACT [FMA:16616] +xref: FMA:16616 +is_a: UBERON:0039168 {source="FMA"} ! colic lymph node + +[Term] +id: UBERON:0037522 +name: ileal lymph node +synonym: "ileal mesentary lymph node" EXACT [FMA:16617] +synonym: "ileal node" EXACT [FMA:16617] +xref: FMA:16617 +is_a: UBERON:0002509 {source="FMA"} ! mesenteric lymph node + +[Term] +id: UBERON:0037527 +name: superior pancreaticoduodenal lymph node +synonym: "superior pancreaticoduodenal node" EXACT [FMA:16624] +xref: FMA:16624 +is_a: UBERON:0016401 {source="FMA"} ! pancreaticoduodenal lymph node + +[Term] +id: UBERON:0037528 +name: inferior pancreaticoduodenal lymph node +synonym: "inferior pancreaticoduodenal node" EXACT [FMA:16625] +xref: FMA:16625 +is_a: UBERON:0016401 {source="FMA"} ! pancreaticoduodenal lymph node + +[Term] +id: UBERON:0037530 +name: inferior pancreatic lymph node +def: "Pancreaticosplenioc lymph node located along the inferior margin of pancreas." [FMA:16628] +synonym: "inferior pancreatic node" EXACT [FMA:16628] +synonym: "inferior pancreatiosplenic lymph node" EXACT [FMA:16628] +synonym: "jPS 18 node" EXACT [FMA:16628] +synonym: "jPS no. 18 node" EXACT [FMA:16628] +synonym: "no. 18 pancreatic lymph node" EXACT [FMA:16628] +synonym: "no. 18 pancreaticoduodenal lymph node" EXACT [FMA:16628] +xref: FMA:16628 +is_a: UBERON:0002527 {source="FMA"} ! pancreatic lymph node + +[Term] +id: UBERON:0037531 +name: intestinal lymph node +synonym: "intestinal node" EXACT [FMA:16629] +synonym: "visceral lumbar lymph node" EXACT [FMA:16629] +xref: FMA:16629 +is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node + +[Term] +id: UBERON:0037532 +name: medial common iliac lymph node +synonym: "medial common iliac node" EXACT [FMA:16641] +xref: FMA:16641 +is_a: UBERON:0015878 {source="FMA"} ! common iliac lymph node + +[Term] +id: UBERON:0037533 +name: intermediate common iliac lymph node +synonym: "intermediate common iliac node" EXACT [FMA:16642] +xref: FMA:16642 +is_a: UBERON:0015878 {source="FMA"} ! common iliac lymph node + +[Term] +id: UBERON:0037534 +name: lateral common iliac lymph node +synonym: "lateral common iliac node" EXACT [FMA:16643] +xref: FMA:16643 +is_a: UBERON:0015878 {source="FMA"} ! common iliac lymph node + +[Term] +id: UBERON:0037535 +name: subaortic common iliac lymph node +synonym: "subaortic common iliac node" EXACT [FMA:16644] +synonym: "subaortic lymph node" EXACT [FMA:16644] +xref: FMA:16644 +is_a: UBERON:0015878 {source="FMA"} ! common iliac lymph node + +[Term] +id: UBERON:0037536 +name: promontory lymph node +synonym: "promontory node" EXACT [FMA:16645] +xref: FMA:16645 +is_a: UBERON:0015878 {source="FMA"} ! common iliac lymph node + +[Term] +id: UBERON:0037538 +name: medial external iliac lymph node +synonym: "medial external iliac node" EXACT [FMA:16647] +xref: FMA:16647 +is_a: UBERON:0015880 {source="FMA"} ! external iliac lymph node + +[Term] +id: UBERON:0037539 +name: intermediate external iliac lymph node +synonym: "intermediate external iliac node" EXACT [FMA:16648] +xref: FMA:16648 +is_a: UBERON:0015880 {source="FMA"} ! external iliac lymph node + +[Term] +id: UBERON:0037540 +name: lateral external iliac lymph node +synonym: "lateral external iliac node" EXACT [FMA:16649] +xref: FMA:16649 +is_a: UBERON:0015880 {source="FMA"} ! external iliac lymph node + +[Term] +id: UBERON:0037541 +name: interiliac lymph node +synonym: "interiliac node" EXACT [FMA:16651] +xref: FMA:16651 +is_a: UBERON:0015880 {source="FMA"} ! external iliac lymph node + +[Term] +id: UBERON:0037548 +name: superior gluteal lymph node +synonym: "superior gluteal node" EXACT [FMA:16658] +xref: FMA:16658 +is_a: UBERON:0015883 {source="FMA"} ! gluteal lymph node + +[Term] +id: UBERON:0037549 +name: inferior gluteal lymph node +synonym: "inferior gluteal node" EXACT [FMA:16659] +xref: FMA:16659 +is_a: UBERON:0015883 {source="FMA"} ! gluteal lymph node + +[Term] +id: UBERON:0037559 +name: anorectal lymph node +xref: FMA:16669 +is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node + +[Term] +id: UBERON:0037560 +name: superficial axillary lymph node +synonym: "axillary node" EXACT [FMA:12771] +xref: FMA:12771 +is_a: UBERON:0001097 {source="FMA"} ! axillary lymph node + +[Term] +id: UBERON:0037566 +name: diaphragmatic lymph node +synonym: "diaphragmatic node" EXACT [FMA:12773] +xref: FMA:12773 +is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node + +[Term] +id: UBERON:0037580 +name: left gastric lymph node +def: "Gastric lymph node located along the lesser curvature of stomach." [FMA:12797] +synonym: "aJCC level 17L node" EXACT [FMA:12797] +synonym: "left gastric node" EXACT [FMA:12797] +xref: FMA:12797 +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:0015863 ! gastric lymph node +intersection_of: UBERON:0015863 ! gastric lymph node +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: connected_to UBERON:0002508 {source="FMA"} ! celiac lymph node +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0037590 +name: lateral axillary lymph node +synonym: "brachial axillary node" EXACT [FMA:14186] +synonym: "humeral node" EXACT [FMA:14186] +synonym: "nodus lymphaticus brachialis axillae" EXACT [FMA:14186] +xref: FMA:14186 +is_a: UBERON:0037560 {source="FMA"} ! superficial axillary lymph node + +[Term] +id: UBERON:0037601 +name: left parietal lumbar lymph node +synonym: "left parietal lumbar node" EXACT [FMA:16602] +xref: FMA:16602 +is_a: UBERON:0002526 {source="FMA"} ! lumbar lymph node +is_a: UBERON:0015212 ! lateral structure +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0037614 +name: appendicular lymph node +synonym: "appendicular node" EXACT [FMA:16620] +xref: FMA:16620 +is_a: UBERON:0037531 {source="FMA"} ! intestinal lymph node + +[Term] +id: UBERON:0037615 +name: pararectal lymph node +synonym: "pararectal node" EXACT [FMA:16621] +synonym: "perirectal lymph node" EXACT [FMA:16621] +synonym: "rectal lymph node" EXACT [FMA:16621] +xref: FMA:16621 +is_a: UBERON:0037531 {source="FMA"} ! intestinal lymph node + +[Term] +id: UBERON:0037722 +name: right retropharyngeal lymph node +xref: FMA:224626 +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:0015869 ! retropharyngeal lymph node +intersection_of: UBERON:0015869 ! retropharyngeal lymph node +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: in_right_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0037723 +name: left retropharyngeal lymph node +xref: FMA:224628 +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:0015869 ! retropharyngeal lymph node +intersection_of: UBERON:0015869 ! retropharyngeal lymph node +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0037763 +name: lateral superior deep cervical lymph node +xref: FMA:232351 +is_a: UBERON:0012310 {source="FMA"} ! deep lateral cervical lymph node + +[Term] +id: UBERON:0037764 +name: anterior superior deep cervical lymph node +xref: FMA:232355 +is_a: UBERON:0012310 {source="FMA"} ! deep lateral cervical lymph node + +[Term] +id: UBERON:0037765 +name: lateral inferior deep cervical lymph node +xref: FMA:232358 +is_a: UBERON:0012310 {source="FMA"} ! deep lateral cervical lymph node + +[Term] +id: UBERON:0037766 +name: anterior inferior deep cervical lymph node +xref: FMA:232361 +is_a: UBERON:0012310 {source="FMA"} ! deep lateral cervical lymph node + +[Term] +id: UBERON:0037787 +name: right occipital lymph node +xref: FMA:232552 +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:0035204 ! occipital lymph node +intersection_of: UBERON:0035204 ! occipital lymph node +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: in_right_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0037788 +name: left occipital lymph node +xref: FMA:232554 +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:0035204 ! occipital lymph node +intersection_of: UBERON:0035204 ! occipital lymph node +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0037789 +name: right apical axillary lymph node +xref: FMA:232558 +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:0037503 ! apical axillary lymph node +intersection_of: UBERON:0037503 ! apical axillary lymph node +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: in_right_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0037790 +name: left apical axillary lymph node +xref: FMA:232560 +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:0037503 ! apical axillary lymph node +intersection_of: UBERON:0037503 ! apical axillary lymph node +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0037793 +name: right subscapular axillary lymph node +xref: FMA:232566 +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:0037500 ! subscapular axillary lymph node +intersection_of: UBERON:0037500 ! subscapular axillary lymph node +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: in_right_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0037794 +name: left subscapular axillary lymph node +xref: FMA:232568 +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:0037500 ! subscapular axillary lymph node +intersection_of: UBERON:0037500 ! subscapular axillary lymph node +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0037795 +name: right pectoral axillary lymph node +xref: FMA:232570 +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:0037501 ! pectoral axillary lymph node +intersection_of: UBERON:0037501 ! pectoral axillary lymph node +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: in_right_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0037796 +name: left pectoral axillary lymph node +xref: FMA:232572 +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:0037501 ! pectoral axillary lymph node +intersection_of: UBERON:0037501 ! pectoral axillary lymph node +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0037797 +name: right central axillary lymph node +xref: FMA:232574 +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:0037502 ! central axillary lymph node +intersection_of: UBERON:0037502 ! central axillary lymph node +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: in_right_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0037798 +name: left central axillary lymph node +xref: FMA:232576 +is_a: UBERON:0015212 ! lateral structure +is_a: UBERON:0037502 ! central axillary lymph node +intersection_of: UBERON:0037502 ! central axillary lymph node +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism + +[Term] +id: UBERON:0037865 +name: jugular lymph node +xref: FMA:232854 +is_a: UBERON:0002429 {source="FMA"} ! cervical lymph node + +[Term] +id: UBERON:0037995 +name: supramandibular lymph node +xref: FMA:234376 +is_a: UBERON:0015870 {source="FMA"} ! lymph node of head + +[Term] +id: UBERON:0037998 +name: external jugular lymph node +xref: FMA:234382 +is_a: UBERON:0002429 {source="FMA"} ! cervical lymph node + +[Term] +id: UBERON:0038001 +name: sternal lymph node +xref: FMA:234388 +is_a: UBERON:0007644 {source="FMA"} ! thoracic lymph node + +[Term] +id: UBERON:0038002 +name: upper intercostal lymph node +xref: FMA:234390 +is_a: UBERON:0012236 {source="FMA"} ! intercostal lymph node + +[Term] +id: UBERON:0038003 +name: lower intercostal lymph node +xref: FMA:234392 +is_a: UBERON:0012236 {source="FMA"} ! intercostal lymph node + +[Term] +id: UBERON:0038037 +name: subclavian lymph node +xref: FMA:234498 +is_a: UBERON:0002429 {source="FMA"} ! cervical lymph node + +[Term] +id: UBERON:0038048 +name: antebrachial lymph node +xref: FMA:234527 +is_a: UBERON:0016399 {source="FMA"} ! lymph node of upper limb + +[Term] +id: UBERON:0038053 +name: cardiophrenic angle lymph node +synonym: "cardiophrenic angle node" EXACT [FMA:265353] +xref: FMA:265353 +is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node + +[Term] +id: UBERON:0038054 +name: retrocrural lymph node +synonym: "retrocrural node" EXACT [FMA:265356] +xref: FMA:265356 +is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node + +[Term] +id: UBERON:0038093 +name: jejunal lymph node +synonym: "jejunal mesentary lymph node" EXACT [FMA:276784] +xref: FMA:276784 +is_a: UBERON:0002509 {source="FMA"} ! mesenteric lymph node + +[Term] +id: UBERON:0038094 +name: inferior rectal lymph node +xref: FMA:276796 +is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node + +[Term] +id: UBERON:0038124 +name: medial diaphragmatic lymph node +synonym: "medial diaphragmatic node" EXACT [FMA:12807] +synonym: "middle diaphragmatic lymph node" EXACT [FMA:12807] +xref: FMA:12807 +is_a: UBERON:0037566 {source="FMA"} ! diaphragmatic lymph node + +[Term] +id: UBERON:0038137 +name: parietal pre-aortic lymph node +synonym: "parietal pre-aortic node" EXACT [FMA:16603] +synonym: "parietal preaortic node" EXACT [FMA:16603] +xref: FMA:16603 +is_a: UBERON:0037601 {source="FMA"} ! left parietal lumbar lymph node + +[Term] +id: UBERON:0038139 +name: retro-aortic lymph node +synonym: "post-aortic lymph node" EXACT [FMA:16607] +synonym: "postaortic lymph node" EXACT [FMA:16607] +synonym: "retro-aortic node" EXACT [FMA:16607] +synonym: "retroaortic lymph node" EXACT [FMA:16607] +xref: FMA:16607 +is_a: UBERON:0037601 {source="FMA"} ! left parietal lumbar lymph node + +[Term] +id: UBERON:0038587 +name: paracardiac lymph node +synonym: "paracardiac node" EXACT [FMA:265350] +xref: FMA:265350 +is_a: UBERON:0037566 {source="FMA"} ! diaphragmatic lymph node + +[Term] +id: UBERON:0038632 +name: pericardial lymph node +xref: FMA:276807 +is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node + +[Term] +id: UBERON:0038633 +name: aortopulmonary lymph node +synonym: "5 thoracic lymph node" EXACT [FMA:276813] +synonym: "aortopulmonary window lymph node" EXACT [FMA:276813] +synonym: "mediastinal lymph node station # 5" EXACT [FMA:276813] +synonym: "station 5 lymph node" EXACT [FMA:276813] +synonym: "station 5 N2 lymph node" EXACT [FMA:276813] +synonym: "subaortic lymph node" EXACT [FMA:276813] +xref: FMA:276813 +is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node + +[Term] +id: UBERON:0038634 +name: para-aortic thoracic lymph node +synonym: "6 thoracic lymph node" EXACT [FMA:276820] +synonym: "pre-aortic No. 6 lymph node" EXACT [FMA:276820] +synonym: "station 6 lymph node" EXACT [FMA:276820] +synonym: "station 6 N2 lymph node" EXACT [FMA:276820] +xref: FMA:276820 +is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node + +[Term] +id: UBERON:0038635 +name: interlobar lymph node +synonym: "11 R+L thoracic" EXACT [FMA:276828] +synonym: "11 thoracic lymph node" EXACT [FMA:276828] +synonym: "station 11 lymph node" EXACT [FMA:276828] +synonym: "station 11 N1 lymph node" EXACT [FMA:276828] +xref: FMA:276828 +is_a: UBERON:0035764 {source="FMA"} ! pulmonary lymph node + +[Term] +id: UBERON:0038638 +name: lobar lymph node +synonym: "12R+L thoracic lymph node" EXACT [FMA:276849] +synonym: "station 12 lymph node" EXACT [FMA:276849] +synonym: "station 12 N1 lymph node" EXACT [FMA:276849] +xref: FMA:276849 +is_a: UBERON:0035764 {source="FMA"} ! pulmonary lymph node + +[Term] +id: UBERON:0038641 +name: segmental lymph node +synonym: "13R+L thoracic lymph node" EXACT [FMA:276855] +synonym: "station 13 lymph node" EXACT [FMA:276855] +synonym: "station 13 N1 lymph node" EXACT [FMA:276855] +xref: FMA:276855 +is_a: UBERON:0035764 {source="FMA"} ! pulmonary lymph node + +[Term] +id: UBERON:0038647 +name: lymph node of inferior pulmonary ligament +synonym: "9R+L thoracic lymph node" EXACT [FMA:276867] +synonym: "inferior pulmonary ligament lymph node" EXACT [FMA:276867] +synonym: "node of inferior pulmonary ligament" EXACT [FMA:276867] +synonym: "pulmonary ligament lymph node" EXACT [FMA:276867] +synonym: "station 9 lymph node" EXACT [FMA:276867] +synonym: "station 9 N2 lymph node" EXACT [FMA:276867] +xref: FMA:276867 +is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node + +[Term] +id: UBERON:0038651 +name: superior mediastinal lymph node +xref: FMA:276903 +is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node + +[Term] +id: UBERON:0038684 +name: superior left gastric lymph node +def: "Left gastric lymph node located along the left gastric artery." [FMA:277061] +synonym: "jPS 7 node" EXACT [FMA:277061] +synonym: "jPS no. 7 node" EXACT [FMA:277061] +synonym: "no. 7 left gastric lymph node" EXACT [FMA:277061] +synonym: "superior left gastric node" EXACT [FMA:277061] +xref: FMA:277061 +is_a: UBERON:0037580 {source="FMA"} ! left gastric lymph node + +[Term] +id: UBERON:0038685 +name: inferior left gastric lymph node +def: "Left gastric lymph node located along the cardiac half of the lesser curvature of stomach in the lesser omentum." [FMA:277064] +synonym: "inferior left gastric node" EXACT [FMA:277064] +synonym: "jPS 3 node" EXACT [FMA:277064] +synonym: "jPS No. 3 node" EXACT [FMA:277064] +xref: FMA:277064 +is_a: UBERON:0037580 {source="FMA"} ! left gastric lymph node + +[Term] +id: UBERON:0038687 +name: visceral lymph node of abdomen +xref: FMA:277227 +is_a: UBERON:0002507 ! abdominal lymph node + +[Term] +id: UBERON:0038691 +name: common hepatic lymph node +def: "Hepatic lymph node located along the common hepatic artery." [FMA:277259] +xref: FMA:277259 +is_a: UBERON:0015859 {source="FMA"} ! hepatic lymph node +relationship: connected_to UBERON:0002508 {source="FMA"} ! celiac lymph node + +[Term] +id: UBERON:0038694 +name: hepatoportal lymph node +def: "Hepatic lymph node located along the portal vein." [FMA:277271] +synonym: "jPS 12p node" EXACT [FMA:277271] +synonym: "jPS No. 12p node" EXACT [FMA:277271] +synonym: "no. 12p hepatic lymph node" EXACT [FMA:277271] +synonym: "periportal lymph node" EXACT [FMA:277271] +synonym: "porta hepatis lymph node" EXACT [FMA:277271] +synonym: "portahepatic lymph node" EXACT [FMA:277271] +synonym: "portal lymph node" EXACT [FMA:277271] +xref: FMA:277271 +is_a: UBERON:0015859 {source="FMA"} ! hepatic lymph node + +[Term] +id: UBERON:0038695 +name: proximal superior pancreatic lymph node +def: "Superior pancreatic lymph node located along the proximal segment of splenic artery." [FMA:277295] +synonym: "jPS 11p node" EXACT [FMA:277295] +synonym: "jPS no. 11p node" EXACT [FMA:277295] +synonym: "no. 11p superior pancreatic lymph node" EXACT [FMA:277295] +synonym: "proximal superior pancreaticosplenic lymph node" EXACT [FMA:277295] +xref: FMA:277295 +is_a: UBERON:0015865 {source="FMA"} ! pancreaticosplenic lymph node +relationship: connected_to UBERON:0002508 {source="FMA"} ! celiac lymph node + +[Term] +id: UBERON:0038696 +name: distal superior pancreatic lymph node +def: "Superior pancreatic lymph node located along the distal segment of splenic artery." [FMA:277298] +synonym: "distal superior pancreaticosplenic lymph node" EXACT [FMA:277298] +synonym: "jPS 11d node" EXACT [FMA:277298] +synonym: "jPS no. 11d node" EXACT [FMA:277298] +synonym: "no. 11d superior pancreatic lymph node" EXACT [FMA:277298] +xref: FMA:277298 +is_a: UBERON:0015865 {source="FMA"} ! pancreaticosplenic lymph node + +[Term] +id: UBERON:0038697 +name: anterior superior pancreaticoduodenal lymph node +def: "Superior pancreaticoduodenal lymph node located on the anterior anterior of superior region of head of pancreas." [FMA:277305] +synonym: "anterosuperior pancreaticoduodenal lymph node" EXACT [FMA:277305] +synonym: "jPS 17a node" EXACT [FMA:277305] +synonym: "jPS no. 17a node" EXACT [FMA:277305] +synonym: "no. 17a pancreaticoduodenal lymph node" EXACT [FMA:277305] +xref: FMA:277305 +is_a: UBERON:0037527 {source="FMA"} ! superior pancreaticoduodenal lymph node + +[Term] +id: UBERON:0038698 +name: posterior superior pancreaticoduodenal lymph node +def: "Superior pancreaticoduodenal lymph node located on the posterior aspect of superior portion of head of pancreas." [FMA:277310] +synonym: "jPS 13a node" EXACT [FMA:277310] +synonym: "jPS no. 13a node" EXACT [FMA:277310] +synonym: "no. 13a pancreaticoduodenal lymph node" EXACT [FMA:277310] +synonym: "posterosuperior pancreaticoduodenal lymph node" EXACT [FMA:277310] +xref: FMA:277310 +is_a: UBERON:0037527 {source="FMA"} ! superior pancreaticoduodenal lymph node + +[Term] +id: UBERON:0038699 +name: anterior inferior pancreaticoduodenal lymph node +def: "Inferior pancreaticoduodenal lymph node located on the anterior aspect of inferior region of head of pancreas." [FMA:277315] +synonym: "anteroinferior pancreaticoduodenal lymph node" EXACT [FMA:277315] +synonym: "jPS 17b node" EXACT [FMA:277315] +synonym: "jPS no. 17b node" EXACT [FMA:277315] +synonym: "no. 17b pancreaticoduodenal lymph node" EXACT [FMA:277315] +xref: FMA:277315 +is_a: UBERON:0037528 {source="FMA"} ! inferior pancreaticoduodenal lymph node + +[Term] +id: UBERON:0038700 +name: posterior inferior pancreaticoduodenal lymph node +def: "Inferior pancreaticoduodenal lymph node located on the posterior aspect of inferior region of head of pancreas." [FMA:277317] +synonym: "jPS 13b node" EXACT [FMA:277317] +synonym: "jPS no. 13b node" EXACT [FMA:277317] +synonym: "no. 13b pancreaticoduodenal lymph node" EXACT [FMA:277317] +synonym: "posteroinferior pancreaticoduodenal lymph node" EXACT [FMA:277317] +xref: FMA:277317 +is_a: UBERON:0037528 {source="FMA"} ! inferior pancreaticoduodenal lymph node + +[Term] +id: UBERON:0038707 +name: anterior pancreaticoduodenal lymph node +synonym: "jPS 17 node" EXACT [FMA:277368] +synonym: "no. 17 pancreaticoduodenal lymph node" EXACT [FMA:277368] +xref: FMA:277368 +is_a: UBERON:0016401 {source="FMA"} ! pancreaticoduodenal lymph node + +[Term] +id: UBERON:0038727 +name: juxta-intestinal mesenteric lymph node +synonym: "mural mesenteric lymph node" EXACT [FMA:277581] +synonym: "para-intestinal mesenteric lymph node" EXACT [FMA:277581] +xref: FMA:277581 +is_a: UBERON:0002509 {source="FMA"} ! mesenteric lymph node + +[Term] +id: UBERON:0038734 +name: visceral pre-aortic lymph node +def: "Intestinal lymph node located anterior to aorta." [FMA:277610] +synonym: "visceral para-aortic lymph node" EXACT [FMA:277610] +synonym: "visceral pre-aortic node" EXACT [FMA:277610] +synonym: "visceral preaortic lymph node" EXACT [FMA:277610] +xref: FMA:277610 +is_a: UBERON:0037531 {source="FMA"} ! intestinal lymph node + +[Term] +id: UBERON:0038735 +name: juxta-arterial jejunal lymph node +xref: FMA:277614 +is_a: UBERON:0037515 {source="FMA"} ! juxta-arterial mesenteric lymph node + +[Term] +id: UBERON:0038736 +name: juxta-arterial ileal lymph node +xref: FMA:277616 +is_a: UBERON:0037515 {source="FMA"} ! juxta-arterial mesenteric lymph node + +[Term] +id: UBERON:0038737 +name: intermediate jejunal lymph node +xref: FMA:277618 +is_a: UBERON:0037514 {source="FMA"} ! intermediate mesenteric lymph node + +[Term] +id: UBERON:0038738 +name: intermediate ileal lymph node +xref: FMA:277620 +is_a: UBERON:0037514 {source="FMA"} ! intermediate mesenteric lymph node + +[Term] +id: UBERON:0038746 +name: gastro-epiploic lymph node +def: "Gastric lymph node located along the greater curvature of stomach." [FMA:277652] +synonym: "gastro-epiploic node" EXACT [FMA:277652] +synonym: "gastro-omental lymph node" EXACT [FMA:277652] +synonym: "gastro-omental node" EXACT [FMA:277652] +synonym: "jPS 4 node" EXACT [FMA:277652] +synonym: "jPS No. 4 node" EXACT [FMA:277652] +synonym: "lymph node of greater curvature of stomach" EXACT [FMA:277652] +xref: FMA:277652 +is_a: UBERON:0015863 {source="FMA"} ! gastric lymph node + +[Term] +id: UBERON:0038784 +name: pararectal lymph node of pelvis +xref: FMA:278181 +is_a: UBERON:0037615 {source="FMA"} ! pararectal lymph node + +[Term] +id: UBERON:0038787 +name: superior ileocolic lymph node +xref: FMA:278188 +is_a: UBERON:0016378 {source="FMA"} ! ileocolic lymph node + +[Term] +id: UBERON:0038796 +name: lymph node along bile duct +synonym: "biliary lymph node" EXACT [FMA:281309] +synonym: "jPS 12b node" EXACT [FMA:281309] +synonym: "jPS No. 12b node" EXACT [FMA:281309] +synonym: "no. 12b hepatic lymph node" EXACT [FMA:281309] +xref: FMA:281309 +is_a: UBERON:0015859 {source="FMA"} ! hepatic lymph node + +[Term] +id: UBERON:0038818 +name: posterior ancreaticoduodenal lymph node +synonym: "jPS 13 node" EXACT [FMA:304577] +synonym: "no. 13 pancreaticoduodenal lymph node" EXACT [FMA:304577] +xref: FMA:304577 +is_a: UBERON:0016401 {source="FMA"} ! pancreaticoduodenal lymph node + +[Term] +id: UBERON:0038849 +name: craniocervical lymph node +def: "Lymph node located in either head and neck region." [FMA:321555] +synonym: "head and neck lymph node" EXACT [FMA:321555] +synonym: "lymph node of head and neck" EXACT [FMA:321555] +xref: FMA:321555 +is_a: UBERON:0000029 {source="FMA"} ! lymph node + +[Term] +id: UBERON:0038853 +name: superficial popliteal lymph node +xref: FMA:44231 +is_a: UBERON:0001543 {source="FMA"} ! popliteal lymph node + +[Term] +id: UBERON:0038854 +name: deep popliteal lymph node +xref: FMA:44232 +is_a: UBERON:0001543 {source="FMA"} ! popliteal lymph node + +[Term] +id: UBERON:0038855 +name: superior medial inguinal lymph node +synonym: "superomedial node" EXACT [FMA:44297] +xref: FMA:44297 +is_a: UBERON:0009007 {source="FMA"} ! superficial inguinal lymph node + +[Term] +id: UBERON:0038856 +name: superior lateral inguinal lymph node +synonym: "superolateral node" EXACT [FMA:44301] +xref: FMA:44301 +is_a: UBERON:0009007 {source="FMA"} ! superficial inguinal lymph node + +[Term] +id: UBERON:0038857 +name: inferior inguinal lymph node +synonym: "inferior inguinal node" EXACT [FMA:44302] +synonym: "subinguinal lymph node" EXACT [FMA:44302] +xref: FMA:44302 +is_a: UBERON:0009007 {source="FMA"} ! superficial inguinal lymph node + +[Term] +id: UBERON:0038859 +name: intermediate deep inguinal lymph node +synonym: "cloquet's gland" EXACT [FMA:44304] +synonym: "cloquet's node" EXACT [FMA:44304] +synonym: "intermediate deep inguinal node" EXACT [FMA:44304] +synonym: "intermediate inguinal lymph node" EXACT [FMA:44304] +synonym: "middle inguinal node" EXACT [FMA:44304] +synonym: "nodus inguinales profundi intermedius" EXACT LATIN [FMA:TA] +synonym: "nodus lymphoideus inguinales profundi intermedius" EXACT LATIN [FMA:TA] +xref: FMA:44304 +is_a: UBERON:0009006 {source="FMA"} ! deep inguinal lymph node + +[Term] +id: UBERON:0038860 +name: distal deep inguinal lymph node +synonym: "distal deep inguinal node" EXACT [FMA:44305] +synonym: "distal inguinal lymph node" EXACT [FMA:44305] +synonym: "nodus inguinales profundi distalis" EXACT LATIN [FMA:TA] +synonym: "nodus lymphoideus inguinales profundi distalis" EXACT LATIN [FMA:TA] +xref: FMA:44305 +is_a: UBERON:0009006 {source="FMA"} ! deep inguinal lymph node + +[Term] +id: UBERON:0038861 +name: tibial lymph node +synonym: "tIbial node" EXACT [FMA:44306] +xref: FMA:44306 +is_a: UBERON:0016398 {source="FMA"} ! lymph node of lower limb + +[Term] +id: UBERON:0038864 +name: fibular lymph node +synonym: "fibular node" EXACT [FMA:44309] +synonym: "nodus fibularis" EXACT LATIN [FMA:TA] +synonym: "nodus lymphoideus fibularis" EXACT LATIN [FMA:TA] +synonym: "peroneal lymph node" EXACT [FMA:44309] +synonym: "peroneal node" EXACT [FMA:44309] +xref: FMA:44309 +is_a: UBERON:0016398 {source="FMA"} ! lymph node of lower limb + +[Term] +id: UBERON:0038867 +name: interpectoral lymph node +synonym: "interpectoral node" EXACT [FMA:44312] +xref: FMA:44312 +is_a: UBERON:0016399 {source="FMA"} ! lymph node of upper limb + +[Term] +id: UBERON:0038868 +name: paramammary lymph node +synonym: "paramammary node" EXACT [FMA:44313] +xref: FMA:44313 +is_a: UBERON:0007644 {source="FMA"} ! thoracic lymph node + +[Term] +id: UBERON:0038870 +name: cubital lymph node +synonym: "cubital node" EXACT [FMA:44315] +xref: FMA:44315 +is_a: UBERON:0016399 {source="FMA"} ! lymph node of upper limb + +[Term] +id: UBERON:0038871 +name: supratrochlear lymph node +synonym: "supra-epicondylar lymph node" EXACT [FMA:44316] +synonym: "supratrochlear node" EXACT [FMA:44316] +xref: FMA:44316 +is_a: UBERON:0016399 {source="FMA"} ! lymph node of upper limb + +[Term] +id: UBERON:0038878 +name: lateral diaphragmatic lymph node +synonym: "lateral diaphragmatic node" EXACT [FMA:5935] +xref: FMA:5935 +is_a: UBERON:0037566 {source="FMA"} ! diaphragmatic lymph node + +[Term] +id: UBERON:0038879 +name: anterior diaphragmatic lymph node +synonym: "anterior diaphragmatic node" EXACT [FMA:5936] +xref: FMA:5936 +is_a: UBERON:0037566 {source="FMA"} ! diaphragmatic lymph node + +[Term] +id: UBERON:0038882 +name: posterior diaphragmatic lymph node +synonym: "posterior diaphragmatic node" EXACT [FMA:5941] +xref: FMA:5941 +is_a: UBERON:0037566 {source="FMA"} ! diaphragmatic lymph node + +[Term] +id: UBERON:0038885 +name: brachiocephalic lymph node +synonym: "brachiocephalic node" EXACT [FMA:5944] +synonym: "innominate lymph node" EXACT [FMA:5944] +xref: FMA:5944 +is_a: UBERON:0007644 {source="FMA"} ! thoracic lymph node + +[Term] +id: UBERON:0038888 +name: posterior mediastinal lymph node +synonym: "nodus mediastinale posteriore lymphaticus" EXACT [FMA:5947] +synonym: "posterior mediastinal node" EXACT [FMA:5947] +xref: FMA:5947 +is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node + +[Term] +id: UBERON:0038894 +name: paratracheal lymph node +synonym: "cervical paratracheal lymph node" EXACT [FMA:5953] +synonym: "nodus paratracheale lymphaticus" EXACT [FMA:5953] +synonym: "paratracheal node" EXACT [FMA:5953] +synonym: "tracheal lymph node" EXACT [FMA:5953] +xref: FMA:5953 +is_a: UBERON:0012311 {source="FMA"} ! deep anterior cervical lymph node + +[Term] +id: UBERON:0038897 +name: superior tracheobronchial lymph node +synonym: "4 thoracic lymph node" EXACT [FMA:5959] +synonym: "4R+L thoracic lymph node" EXACT [FMA:5959] +synonym: "lower paratracheal lymph node" EXACT [FMA:5959] +synonym: "nodus tracheobronchiale superiore lymphaticus" EXACT [FMA:5959] +synonym: "station 4 lymph node" EXACT [FMA:5959] +synonym: "station 4 N2 lymph node" EXACT [FMA:5959] +xref: FMA:5959 +is_a: UBERON:0015472 {source="FMA"} ! tracheobronchial lymph node + +[Term] +id: UBERON:0038900 +name: inferior tracheobronchial lymph node +synonym: "carinate lymph node" EXACT [FMA:5962] +synonym: "nodus tracheobronchialis inferioris lymphaticus" EXACT [FMA:5962] +xref: FMA:5962 +is_a: UBERON:0015472 {source="FMA"} ! tracheobronchial lymph node + +[Term] +id: UBERON:0038920 +name: buccinator lymph node +synonym: "buccinator node" EXACT [FMA:61223] +synonym: "nodus buccinatorius" EXACT LATIN [FMA:TA] +synonym: "nodus lymphoideus buccinatorius" EXACT LATIN [FMA:TA] +synonym: "noeuds lymphatiques buccinateurs@fr" EXACT [FMA:61223] +xref: FMA:61223 +is_a: UBERON:0015871 {source="FMA"} ! facial lymph node + +[Term] +id: UBERON:0038922 +name: nasolabial lymph node +synonym: "nasolabial node" EXACT [FMA:61225] +synonym: "nodus lymphoideus nasolabialis" EXACT LATIN [FMA:TA] +synonym: "nodus nasolabialis" EXACT LATIN [FMA:TA] +synonym: "noeud lymphatique naso-labial@fr" EXACT [FMA:61225] +xref: FMA:61225 +is_a: UBERON:0015871 {source="FMA"} ! facial lymph node + +[Term] +id: UBERON:0038923 +name: malar lymph node +synonym: "malar node" EXACT [FMA:61226] +synonym: "nodus lymphoideus malaris" EXACT LATIN [FMA:TA] +synonym: "nodus malaris" EXACT LATIN [FMA:TA] +synonym: "noeud lymphatique malaire@fr" EXACT [FMA:61226] +xref: FMA:61226 +is_a: UBERON:0015871 {source="FMA"} ! facial lymph node + +[Term] +id: UBERON:0038925 +name: lingual lymph node +xref: FMA:61228 +is_a: UBERON:0015870 {source="FMA"} ! lymph node of head + +[Term] +id: UBERON:0038929 +name: infrahyoid lymph node +synonym: "infrahyoid node" EXACT [FMA:61233] +xref: FMA:61233 +is_a: UBERON:0012311 {source="FMA"} ! deep anterior cervical lymph node + +[Term] +id: UBERON:0038930 +name: prelaryngeal lymph node +synonym: "prelaryngeal node" EXACT [FMA:61234] +xref: FMA:61234 +is_a: UBERON:0012311 {source="FMA"} ! deep anterior cervical lymph node + +[Term] +id: UBERON:0038931 +name: thyroid lymph node +synonym: "thyroid node" EXACT [FMA:61235] +xref: FMA:61235 +is_a: UBERON:0012311 {source="FMA"} ! deep anterior cervical lymph node +relationship: connected_to UBERON:0002046 {source="FMA"} ! thyroid gland + +[Term] +id: UBERON:0038932 +name: pretracheal lymph node +synonym: "pretracheal node" EXACT [FMA:61236] +xref: FMA:61236 +is_a: UBERON:0012311 {source="FMA"} ! deep anterior cervical lymph node + +[Term] +id: UBERON:0038934 +name: superior deep lateral cervical lymph node +xref: FMA:61238 +is_a: UBERON:0012310 {source="FMA"} ! deep lateral cervical lymph node + +[Term] +id: UBERON:0038935 +name: inferior deep lateral cervical lymph node +xref: FMA:61239 +is_a: UBERON:0012310 {source="FMA"} ! deep lateral cervical lymph node + +[Term] +id: UBERON:0038936 +name: jugulodigastric lymph node +synonym: "jugulodigastric node" EXACT [FMA:61240] +synonym: "nodus jugulodigastricus" EXACT LATIN [FMA:TA] +synonym: "nodus lymphoideus jugulodigastricus" EXACT LATIN [FMA:TA] +synonym: "noeud lymphatique jugulodigastrique@fr" EXACT [FMA:61240] +xref: FMA:61240 +is_a: UBERON:0012310 {source="FMA"} ! deep lateral cervical lymph node + +[Term] +id: UBERON:0038938 +name: accessory cervical lymph node +xref: FMA:61242 +is_a: UBERON:0002429 {source="FMA"} ! cervical lymph node + +[Term] +id: UBERON:0038943 +name: superior diaphragmatic lymph node +synonym: "superior diaphragmatic node" EXACT [FMA:66167] +xref: FMA:66167 +is_a: UBERON:0037566 {source="FMA"} ! diaphragmatic lymph node + +[Term] +id: UBERON:0038951 +name: suprapyloric lymph node +def: "Pylorioc lymph node located near the bifurcation of gastroduodenal artery and superior to the pylorus." [FMA:66183] +synonym: "jPS 5 node" EXACT [FMA:66183] +synonym: "jPS no.5 node" EXACT [FMA:66183] +synonym: "no. 5 station pyloric lymph node" EXACT [FMA:66183] +synonym: "nodus lymphoideus suprapyloricus" EXACT LATIN [FMA:TA] +synonym: "nodus suprapyloricus" EXACT LATIN [FMA:TA] +synonym: "noeuds lymphatiques supra-pyloriques@fr" EXACT [FMA:66183] +synonym: "suprapyloric node" EXACT [FMA:66183] +xref: FMA:66183 +is_a: UBERON:0015866 {source="FMA"} ! pyloric lymph node + +[Term] +id: UBERON:0038952 +name: subpyloric lymph node +def: "Pylorioc lymph node located in the angle between the superior and descending parts of duodenum." [FMA:66184] +synonym: "infrapyloric lymph node" EXACT [FMA:66184] +synonym: "infrapyloric node" EXACT [FMA:66184] +synonym: "jPS 6 node" EXACT [FMA:66184] +synonym: "jPS no. 6 node" EXACT [FMA:66184] +synonym: "no. 6 station pyloric lymph node" EXACT [FMA:66184] +synonym: "subpyloric node" EXACT [FMA:66184] +xref: FMA:66184 +is_a: UBERON:0015866 {source="FMA"} ! pyloric lymph node + +[Term] +id: UBERON:0038953 +name: retropyloric lymph node +synonym: "retropyloric node" EXACT [FMA:66185] +xref: FMA:66185 +is_a: UBERON:0015866 {source="FMA"} ! pyloric lymph node + +[Term] +id: UBERON:0039162 +name: inferior ileocolic lymph node +xref: FMA:78731 +is_a: UBERON:0016378 {source="FMA"} ! ileocolic lymph node + +[Term] +id: UBERON:0039163 +name: lateral sacral lymph node +xref: FMA:84597 +is_a: UBERON:0002528 {source="FMA"} ! sacral lymph node + +[Term] +id: UBERON:0039164 +name: medial sacral lymph node +xref: FMA:84598 +is_a: UBERON:0002528 {source="FMA"} ! sacral lymph node + +[Term] +id: UBERON:0039167 +name: bronchopulmonary lymph node +def: "A tracheobronchial lymph node situated in the hilum of a lung." [https://en.wikipedia.org/w/index.php?title=Tracheobronchial_lymph_nodes&oldid=974745862, https://orcid.org/0000-0002-2825-0621] +synonym: "10 R+L thoracic" EXACT [FMA:5965] +synonym: "bronchopulmonary node" EXACT [FMA:5965] +synonym: "hilar lymph node" EXACT [FMA:5965] +synonym: "station 10 lymph node" EXACT [FMA:5965] +synonym: "station 10 N1 lymph node" EXACT [FMA:5965] +xref: FMA:5965 +is_a: UBERON:0007644 {source="https://orcid.org/0000-0002-2825-0621", source="FMA"} ! thoracic lymph node + +[Term] +id: UBERON:0039168 +name: colic lymph node +synonym: "colic node" EXACT [FMA:16612] +synonym: "pericolic lymph node" EXACT [FMA:16612] +synonym: "pericolonic lymph node" EXACT [FMA:16612] +xref: FMA:16612 +xref: http://www.snomedbrowser.com/Codes/Details/281593008 +is_a: UBERON:0037531 {source="FMA"} ! intestinal lymph node + +[Term] +id: UBERON:1000000 +name: chin ventral margin +def: "Subdivision of the head consisting of the area along the lower edge of the chin." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: phenotype_rcn +is_a: UBERON:0001444 ! subdivision of head +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/seger +relationship: part_of UBERON:0008199 ! chin + +[Term] +id: UBERON:1000001 +name: collection of hairs on vertex +def: "A collection of hairs that grows on the vertex (top of head)." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: phenotype_rcn +synonym: "collection of hair on cranium" RELATED [] +synonym: "cranial hair" RELATED [] +synonym: "head hair" RELATED [] +is_a: UBERON:0014382 ! collection of hairs on head or neck +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/seger +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:1000002 +name: cranial midline area +def: "The middle part of the head, located approximately equidistant from the left and the right sides of the head." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: phenotype_rcn +synonym: "cranial midline" RELATED [] +is_a: UBERON:0001444 ! subdivision of head +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/seger +relationship: intersects_midsagittal_plane_of UBERON:0000033 ! head + +[Term] +id: UBERON:1000003 +name: dewlap +def: "A longitudinal flap of skin that hangs beneath the lower jaw or neck." [http://en.wikipedia.org/wiki/Dewlap] +comment: Compare with: comb and wattle +subset: phenotype_rcn +xref: http://en.wikipedia.org/wiki/Dewlap +xref: http://www.snomedbrowser.com/Codes/Details/13622004 +is_a: UBERON:1000021 ! skin of face + +[Term] +id: UBERON:1000004 +name: collection of hair on external ear +def: "A collection of hairs that grows on the external ear." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: phenotype_rcn +synonym: "external ear hair" RELATED [] +is_a: UBERON:0014382 ! collection of hairs on head or neck +intersection_of: UBERON:0010164 ! collection of hairs +intersection_of: part_of UBERON:0001691 ! external ear +relationship: composed_primarily_of UBERON:0022279 ! strand of hair on external ear +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/seger +relationship: part_of UBERON:0001691 ! external ear + +[Term] +id: UBERON:1000005 +name: external ear margin +def: "Anatomical junction consisting of the area along the edge of the external ear." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: phenotype_rcn +is_a: UBERON:0007651 ! anatomical junction +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/seger +relationship: part_of UBERON:0001691 ! external ear + +[Term] +id: UBERON:1000006 +name: collection of hair on forehead +def: "A collection of hairs that grows on the forehead." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: phenotype_rcn +is_a: UBERON:0010165 ! collection of hair on face +intersection_of: UBERON:0010164 ! collection of hairs +intersection_of: part_of UBERON:0008200 ! forehead +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/seger +relationship: part_of UBERON:0008200 ! forehead + +[Term] +id: UBERON:1000007 +name: forehead protuberance +def: "A bulge, knob, or swelling that protrudes from the forehead." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: phenotype_rcn +is_a: UBERON:0001444 ! subdivision of head +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/seger +relationship: part_of UBERON:0008200 ! forehead + +[Term] +id: UBERON:1000008 +name: left part of face +def: "Subdivision of the head consisting of the left half of the face, vertically divided." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: phenotype_rcn +is_a: UBERON:0001444 ! subdivision of head +is_a: UBERON:0015212 ! lateral structure +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/seger +relationship: in_left_side_of UBERON:0001456 ! face +relationship: part_of UBERON:0001456 ! face + +[Term] +id: UBERON:1000009 +name: midline crest +def: "A ridge or peak located along the middle part of the head, located approximately equidistant from the left and the right sides of the head." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: phenotype_rcn +is_a: UBERON:0001444 ! subdivision of head +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/seger + +[Term] +id: UBERON:1000010 +name: mole +def: "A benign tumor on the skin, usually with darker pigment." [http://en.wikipedia.org/wiki/Melanocytic_nevus] +subset: efo_slim +subset: phenotype_rcn +synonym: "melanocytic nevus" RELATED [] +synonym: "naevus" EXACT [ZFA:0005043] +synonym: "nevus" EXACT [ZFA:0005043] +xref: EFO:0000625 +xref: Melanocytic:nevus +xref: MPATH:361 +xref: TAO:0005043 +xref: ZFA:0005043 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002067 {source="ZFA"} ! dermis + +[Term] +id: UBERON:1000011 +name: labial commissure +def: "Anatomical structure consisting of either corner of the mouth." [http://en.wikipedia.org/wiki/Labial_commissure_of_mouth] +subset: phenotype_rcn +synonym: "commissura labiorum oris" RELATED LATIN [http://en.wikipedia.org/wiki/Labial_commissure_of_mouth] +synonym: "commissural lip" RELATED [] +synonym: "corner of mouth" RELATED [] +xref: FMA:277716 +xref: http://en.wikipedia.org/wiki/Labial_commissure_of_mouth +is_a: UBERON:0034929 ! external soft tissue zone +relationship: part_of UBERON:0000165 ! mouth + +[Term] +id: UBERON:1000012 +name: nose anterior margin +def: "Subdivision of the head consisting of the area along the front edge of the external nose." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: phenotype_rcn +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0034929 ! external soft tissue zone +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/seger +relationship: part_of UBERON:0007827 ! external nose + +[Term] +id: UBERON:1000013 +name: nose vertex +def: "The extreme point of curvature of the external nose." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: phenotype_rcn +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0034929 ! external soft tissue zone +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/seger +relationship: part_of UBERON:0007827 ! external nose + +[Term] +id: UBERON:1000014 +name: right part of face +def: "Subdivision of the head consisting of the right half of the face, vertically divided." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: phenotype_rcn +is_a: UBERON:0001444 ! subdivision of head +is_a: UBERON:0015212 ! lateral structure +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/seger +relationship: in_right_side_of UBERON:0001456 ! face +relationship: part_of UBERON:0001456 ! face + +[Term] +id: UBERON:1000015 +name: skin of snout +def: "A zone of skin that is part of the snout." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: phenotype_rcn +synonym: "snout skin" EXACT [MA:0003079] +xref: EMAPA:37746 {source="MA:th"} +xref: MA:0003079 +is_a: UBERON:1000021 ! skin of face +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0006333 ! snout +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/seger +relationship: part_of UBERON:0006333 ! snout + +[Term] +id: UBERON:1000016 +name: tip of snout +def: "Subdivision of the head consisting of the pointed or rounded end or extremity of the snout." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: phenotype_rcn +is_a: UBERON:0034929 ! external soft tissue zone +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/seger +relationship: part_of UBERON:0006333 ! snout + +[Term] +id: UBERON:1000017 +name: tip of external ear +def: "Subdivision of the head consisting of the pointed or rounded end or extremity of the external ear." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: phenotype_rcn +is_a: UBERON:0034929 ! external soft tissue zone +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/seger +relationship: part_of UBERON:0001691 ! external ear + +[Term] +id: UBERON:1000018 +name: cluster of hairs +def: "A small collection or tuft of hairs." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: phenotype_rcn +synonym: "tuft of hair" RELATED [] +is_a: UBERON:0010164 ! collection of hairs +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/seger + +[Term] +id: UBERON:1000019 +name: top of head +def: "The top of the head." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: phenotype_rcn +synonym: "vertex" RELATED [FMA:46484] +synonym: "vertex of head" EXACT [FMA:46484] +xref: FMA:46484 +xref: http://www.snomedbrowser.com/Codes/Details/362616002 +is_a: UBERON:0001444 ! subdivision of head +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/seger + +[Term] +id: UBERON:1000020 +name: collection of hair on snout +def: "A collection of hairs that grows on the snout." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: phenotype_rcn +is_a: UBERON:0010165 ! collection of hair on face +intersection_of: UBERON:0010165 ! collection of hair on face +intersection_of: part_of UBERON:0006333 ! snout +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/seger +relationship: part_of UBERON:0006333 ! snout +created_by: eriks +creation_date: 2012-02-05T05:21:29Z + +[Term] +id: UBERON:1000021 +name: skin of face +def: "A zone of skin that is part of the face." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +subset: pheno_slim +subset: phenotype_rcn +synonym: "face skin" EXACT [EMAPA:36657, FMA:24758] +synonym: "facial skin" RELATED [] +xref: EMAPA:36657 +xref: FMA:24758 +xref: http://linkedlifedata.com/resource/umls/id/C0222084 +xref: http://www.snomedbrowser.com/Codes/Details/361703006 +xref: NCIT:C33561 +xref: UMLS:C0222084 {source="ncithesaurus:Skin_of_the_Face"} +is_a: UBERON:0001084 ! skin of head +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0001456 ! face +property_value: dc-contributor https://github.com/cmungall +property_value: dc-contributor https://github.com/seger +relationship: part_of UBERON:0001456 ! face +created_by: eriks +creation_date: 2012-02-05T05:23:01Z + +[Term] +id: UBERON:1000022 +name: Zymbal's gland +def: "A multilobulated modified sebaceous gland that is located at the base of the external ear, lined by stratified squamous epithelium, and secretes into the auditory canal" [http://ctrgenpath.net/static/atlas/mousehistology/Windows/senses/zymbalgland.html, ISBN:0123813611, MP:0013384] +synonym: "auditory sebaceous gland" RELATED [ISBN:0123813611] +synonym: "gland of Zymbal" RELATED [] +synonym: "Zymbal gland" RELATED [MA:0002900] +xref: EMAPA:37808 {source="MA:th"} +xref: http://linkedlifedata.com/resource/umls/id/C0687056 +xref: http://www.snomedbrowser.com/Codes/Details/105587007 +xref: MA:0002900 +xref: NCIT:C77954 +xref: UMLS:C0687056 {source="ncithesaurus:Zymbal_Gland"} +is_a: UBERON:0015251 {source="ISBN:0123813611", source="MA"} ! modified sebaceous gland +relationship: part_of UBERON:0001691 {source="cjm"} ! external ear + +[Term] +id: UBERON:1000023 +name: spleen pulp +def: "The parenchyma of the spleen, consisting of lymphocytes and macrophages. It lies between the splenic trabecula. Red pulp is the part suffused with blood and white pulp consists of areas of lymphatic tissue where there are sleeves of lymphocytes and macrophages." [ncithesaurus:Splenic_Pulp] +synonym: "Malpighian corpuscles" EXACT [FMA:15845] +synonym: "pulp of spleen" EXACT [] +synonym: "splenic pulp" EXACT [] +xref: EMAPA:35805 +xref: FMA:15845 +xref: http://linkedlifedata.com/resource/umls/id/C0229691 +xref: http://www.snomedbrowser.com/Codes/Details/13515001 +xref: MA:0002487 +xref: NCIT:C33603 +xref: UMLS:C0229691 {source="ncithesaurus:Splenic_Pulp"} +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:1000024 {source="FMA"} ! parenchyma of spleen + +[Term] +id: UBERON:1000024 +name: parenchyma of spleen +def: "A parenchyma that is part of a spleen." [OBOL:automatic] +synonym: "splenic parenchyma" EXACT [FMA:16029] +xref: FMA:16029 +is_a: UBERON:0000353 ! parenchyma +is_a: UBERON:0004120 ! mesoderm-derived structure +intersection_of: UBERON:0000353 ! parenchyma +intersection_of: part_of UBERON:0002106 ! spleen +relationship: part_of UBERON:0002106 ! spleen + +[Term] +id: UBERON:1100000 +name: digestive tract junction +def: "An anatomical junction between two parts of the digestive tract." [ORCID:0000-0002-7073-9172] +is_a: UBERON:0007651 ! anatomical junction +intersection_of: UBERON:0007651 ! anatomical junction +intersection_of: connects UBERON:0004921 ! subdivision of digestive tract +relationship: connects UBERON:0004921 ! subdivision of digestive tract +property_value: dc-creator http://orcid.org/0000-0002-7073-9172 +creation_date: 2021-02-05T11:19:31Z + +[Term] +id: UBERON:1500000 +name: scapular blade +namespace: none +def: "Enlarged and broad extension of the scapula distal to the glenoid region that conforms to the contour of the ribs. Origin for the major shoulder muscles including the deltoid group." [] +comment: In non-tetrapod sarcopterygians the role of the scapula blade is filled by the enlarge cleithrum. +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0006849 ! scapula +created_by: PERSON: Alex Dececchi + +[Term] +id: UBERON:1500003 +name: lateral line canal lumen +namespace: none +def: "Anatomical space that contains a portion of the lateral line system." [] {comment="PHENOSCAPE:MAH"} +comment: TO DO: think about definitions for spaces in bone, in which pass through nerves, muscles, tendons and are defined by them. +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0002540 ! lateral line system + +[Term] +id: UBERON:1500005 +name: ischial cartilage +namespace: none +def: "Paired cartilaginous element forming the posterior portion of the pelvic girdle. [D.F. Markle, BULLETIN OF MARINE SCIENCE. 30(1): 45-53. 1980]" [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005179 ! pelvic region element +is_a: UBERON:0007844 ! cartilage element +relationship: develops_from UBERON:0006254 ! ischial cartilage element +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton + +[Term] +id: UBERON:1500006 +name: paired fin radial bone +namespace: none +def: "paired fin radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +is_a: UBERON:0004375 ! bone of free limb or fin +is_a: UBERON:1600006 ! paired fin radial element +is_a: UBERON:2000271 ! radial bone +intersection_of: UBERON:1600006 ! paired fin radial element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue + +[Term] +id: UBERON:1500007 +name: mesopterygium cartilage +namespace: none +def: "The median, elongated basal cartilage of the pectoral fin." [] +comment: Relevant for Elasmobranchii, Holocephali and primitive Teleostomi. {xref="http://www.briancoad.com/dictionary/DicPics/mesopterygium.htm"} +is_a: UBERON:2201587 ! pectoral fin proximal radial cartilage +is_a: UBERON:4300081 ! mesopterygium element +intersection_of: UBERON:4300081 ! mesopterygium element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:1500008 +name: pelvic fin distal radial bone +namespace: none +def: "Pelvic fin radial that develops from the pelvic fin endoskeletal disc. Pelvic fin distal radials are paired." [] +comment: Placeholder definition, fix me. +is_a: UBERON:1600008 ! pelvic fin distal radial element +is_a: UBERON:2000508 ! pelvic fin radial bone +intersection_of: UBERON:1600008 ! pelvic fin distal radial element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +created_by: Melissa Haendel + +[Term] +id: UBERON:1500009 +name: pelvic fin basipterygial radial +namespace: none +def: "Pelvic fin radial that is an endochondral fused radials or pterygiophores at the base of the pelvic fin." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] +is_a: UBERON:2000508 ! pelvic fin radial bone +created_by: Melissa Haendel + +[Term] +id: UBERON:1500010 +name: pelvic fin middle radial bone +namespace: none +def: "Pelvic fin radial in the middle of the pelvic fin." [] +comment: placeholder def, fix me. +is_a: UBERON:2000508 ! pelvic fin radial bone +created_by: Melissa Haendel + +[Term] +id: UBERON:1600006 +name: paired fin radial element +namespace: none +def: "Radial element that is part of a paired fin." [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:2100271 ! radial element +intersection_of: UBERON:2100271 ! radial element +intersection_of: part_of UBERON:0002534 ! paired fin +relationship: part_of UBERON:4300013 ! paired fin radial skeleton + +[Term] +id: UBERON:1600008 +name: pelvic fin distal radial element +namespace: none +def: "Pelvic fin radial element that develops from the pelvic fin endoskeletal disc. Pelvic fin distal radial elements are paired." [] +comment: Placeholder definition, fix me. +is_a: UBERON:2100508 ! pelvic fin radial element + +[Term] +id: UBERON:1600009 +name: obsolete pelvic fin basipterygial radial element +namespace: none +def: "Pelvic fin radial element that is an endochondral fused radial elements or pterygiophores at the base of the pelvic fin." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] +comment: Obsoleted because basipterygium is not a type of radial. +is_obsolete: true + +[Term] +id: UBERON:1600010 +name: pelvic fin middle radial element +namespace: none +def: "Pelvic fin radial element in the middle of the pelvic fin." [] +comment: placeholder def, fix me. +is_a: UBERON:2100508 ! pelvic fin radial element + +[Term] +id: UBERON:1700006 +name: paired fin radial cartilage +namespace: none +def: "paired fin radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +is_a: UBERON:1600006 ! paired fin radial element +is_a: UBERON:2200271 ! radial cartilage +intersection_of: UBERON:1600006 ! paired fin radial element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2000000 +name: Brachet's cleft +namespace: uberon/phenoscape-anatomy +def: "The visible division between epiblast and hypoblast in the gastrula. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000000 +is_a: UBERON:0002050 ! embryonic structure +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000001 +name: Kupffer's vesicle +namespace: uberon/phenoscape-anatomy +def: "Small but distinctive epithelial sac containing fluid, located midventrally posterior to the yolk cell or its extension, and transiently present during most of the segmentation period. Kimmel et al, 1995. Kupffer's vesicle has been compared to the mouse embryonic node. Drummond et al, 2005." [ZFIN:curator] +xref: ZFA:0000001 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0002533 ! post-anal tail bud +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000003 +name: obsolete adaxial cell +namespace: uberon/phenoscape-anatomy +comment: TO DO: replaced by CL:0007016 not in release of CL yet. +synonym: "adaxial cells" EXACT PLURAL [TAO:0000003] +xref: ZFA:0000003 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000004 +name: anterior axial hypoblast +namespace: uberon/phenoscape-anatomy +synonym: "pre-polster" EXACT [ZFIN:ZDB-PUB-051019-5] +xref: ZFA:0000004 +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:2001378 ! axial hypoblast +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000006 +name: ball +namespace: uberon/phenoscape-anatomy +def: "The anterior round region of the yolk cell present after the yolk extension forms during the segmentation period. Kimmel et al, 1995." [ZFIN:curator] +synonym: "yolk ball" EXACT [ZFIN:ZDB-PUB-961014-576] +xref: ZFA:0000006 +is_a: UBERON:0000475 ! organism subdivision +relationship: part_of UBERON:2000084 ! yolk +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000023 +name: obsolete forerunner cell group +namespace: uberon/phenoscape-anatomy +def: "A group of cells that migrate at the leading edge of shield during gastrulation but do not involute. At the end of gastrulation, forerunner cells migrate deep into the embryo and organize to form Kuppfer's vesicle. Cooper and D'Amico, 1996." [ZFIN:curator] +comment: incorrectly generalized to teleosts so being obsoleted. 'embryonic structure' and develops_from some 'noninvoluting endocytic marginal cell cluster' +synonym: "DFCs" EXACT [TAO:0000023] +synonym: "dorsal forerunner cells" EXACT [TAO:0000023] +synonym: "forerunner cells" EXACT PLURAL [TAO:0000023] +xref: ZFA:0000023 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000033 +name: intermediate cell mass of mesoderm +namespace: uberon/phenoscape-anatomy +synonym: "ICM" EXACT [TAO:0000033] +synonym: "intermediate cell mass of Oellacher" EXACT [TAO:0000033] +synonym: "posterior intermediate cell mass" EXACT [TAO:0000033] +xref: ZFA:0000033 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: develops_from UBERON:0003081 ! lateral plate mesoderm +relationship: develops_from UBERON:2001201 ! ventral lateral mesoderm +relationship: part_of UBERON:0002390 ! hematopoietic system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000039 +name: median axial vein +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000039 +is_a: UBERON:0001638 ! vein +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000040 +name: median fin fold +namespace: uberon/phenoscape-anatomy +def: "Surface structure that will develop into one of the median fins. Extends from dorsal surface of fish, caudal to the 8th somite, to the ventral surface ending at the caudal side of the vent." [ZFIN:curator] +synonym: "median fin" RELATED [TAO:0000040] +synonym: "median fin-fold" RELATED [TAO:0000040] +synonym: "median fin-folds" RELATED PLURAL [TAO:0000040] +xref: ZFA:0000040 +is_a: UBERON:0003102 ! surface structure +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000043 +name: obsolete muscle pioneer somite 1 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 1" EXACT PLURAL [TAO:0000043] +xref: ZFA:0000043 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000044 +name: myotome somite 14 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000044 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000726 ! somite 14 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000052 +name: dorsal actinotrichium +namespace: uberon/phenoscape-anatomy +def: "Actinotrichium which is part of the dorsal fin fold." [TAO:wd] +synonym: "dorsal actinotrichia" EXACT PLURAL [TAO:0000052] +xref: ZFA:0000052 +is_a: UBERON:2000089 ! actinotrichium +intersection_of: UBERON:2000089 ! actinotrichium +intersection_of: part_of UBERON:2000102 ! dorsal fin fold +relationship: part_of UBERON:2000102 ! dorsal fin fold +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000058 +name: polster +namespace: uberon/phenoscape-anatomy +def: "The hatching gland rudiment at the time it underlies the forebrain during the early segmentation period. Kimmel et al, 1995." [ZFIN:curator] +synonym: "pillow" EXACT [ZFIN:ZDB-PUB-961014-576] +xref: ZFA:0000058 +is_a: UBERON:0002050 ! embryonic structure +relationship: develops_from UBERON:2000004 ! anterior axial hypoblast +relationship: part_of UBERON:0003063 ! prechordal plate +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000068 +name: neural plate proneural cluster +namespace: uberon/phenoscape-anatomy +synonym: "neural plate proneural clusters" EXACT PLURAL [TAO:0000068] +synonym: "proneural cluster" RELATED [TAO:0000068] +xref: ZFA:0000068 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0003075 ! neural plate +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000070 +name: obsolete sensory axons peripheral +namespace: uberon/phenoscape-anatomy +comment: removed axiom: part_of some 'sensory system'.\nSeems out of scope for uberon and/or not very useful as a class. +xref: ZFA:0000070 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000072 +name: somite 1 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000072 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000073 +name: somite 5 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000073 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000074 +name: somite 26 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000074 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000078 +name: ventral actinotrichium +namespace: uberon/phenoscape-anatomy +def: "Actinotrichium which is part of the ventral fin fold." [TAO:wd] +synonym: "ventral actinotrichia" EXACT PLURAL [TAO:0000078] +xref: ZFA:0000078 +is_a: UBERON:2000089 ! actinotrichium +intersection_of: UBERON:2000089 ! actinotrichium +intersection_of: part_of UBERON:2001069 ! ventral fin fold +relationship: part_of UBERON:2001069 ! ventral fin fold +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000083 +name: ventral mesoderm +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000083 +is_a: UBERON:0000926 ! mesoderm +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000084 +name: yolk +namespace: uberon/phenoscape-anatomy +def: "Nutrient store for embryonic development in the form of semicrystalline phospholipoprotein and contained within yolk granules. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000084 +is_a: UBERON:0002050 ! embryonic structure +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000088 +name: yolk syncytial layer +namespace: uberon/phenoscape-anatomy +def: "Peripheral layer of the yolk cell including nuclei and non-yolky cytoplasm. Kimmel et al, 1995." [ZFIN:curator] +synonym: "periblast" EXACT [ZFIN:ZDB-PUB-961014-576] +synonym: "YSL" EXACT [ZFIN:ZDB-PUB-961014-576] +xref: ZFA:0000088 +is_a: UBERON:0002050 ! embryonic structure +relationship: develops_from UBERON:2000084 ! yolk +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000089 +name: actinotrichium +namespace: uberon/phenoscape-anatomy +def: "Elastoidin fin ray that is slender, sometimes branched distally and present in the embryonic fin fold. Actinotrichia are translucent and exhibit birefringence. " [http://purl.obolibrary.org/obo/uberon/tracker/129, PHENOSCAPE:pm] +comment: Actinotrichia are required for lepidotrichium development. They are occasionally retained in adult fishes. Further taxon comments from Witten & Huysseune (2007): 'Actinotrichia are found in the embryonic fin fold, along the outer edge of the fin in Actinopterygii, and in the adipose fin in teleosts (Starck 1979; Géraudie and Meunier 1982; Becerra et al. 1983). Only in polypterids has their presence been reported in the joints between adjacent lepidotrichial elements (Géraudie 1988). In the sarcopterygian lineage, actinotrichia are present in coelacanths (Géraudie and Meunier 1980) and in young dipnoans (Arratia et al. 2001).' +synonym: "actinotrichia" EXACT PLURAL [TAO:0000089] +xref: ZFA:0000089 +xref: ZFA:0005435 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:4400006 ! elastoidin fin ray +relationship: develops_from UBERON:0001003 {comment="PHENOSCAPE:pm"} ! skin epidermis +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000090 +name: apical ectodermal ridge dorsal fin +namespace: uberon/phenoscape-anatomy +def: "Apical ectodermal ridge that is part of the dorsal fin." [ZFIN:curator] +xref: ZFA:0000090 +is_a: UBERON:0004356 ! apical ectodermal ridge +relationship: part_of UBERON:0003097 ! dorsal fin +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000092 +name: obsolete axis +namespace: uberon/phenoscape-anatomy +synonym: "midline" EXACT [TAO:0000092] +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000093 +name: obsolete blastomere +namespace: uberon/phenoscape-anatomy +def: "A cell arising during cleavage; the term encompasses the partially cleaved, incomplete cells at the blastodisc margin before they collectively form the yolk syncytial layer (YSL) in the midblastula. Kimmel et al, 1995." [ZFIN:curator] +comment: Term already present in CL. For the subclasses, see http://purl.obolibrary.org/obo/cl/tracker/18 +synonym: "blastomeres" EXACT PLURAL [TAO:0000093] +xref: ZFA:0000093 +is_obsolete: true +replaced_by: CL:0000353 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000096 +name: cardinal system +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000096 +is_a: UBERON:0004537 ! blood vasculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000098 +name: proliferative region +namespace: uberon/phenoscape-anatomy +synonym: "cell cycle" RELATED [TAO:0000098] +synonym: "cell division" RELATED [TAO:0000098] +synonym: "proliferation" RELATED [TAO:0000098] +xref: ZFA:0000098 +is_a: UBERON:0000477 ! anatomical cluster +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000102 +name: dorsal fin fold +namespace: uberon/phenoscape-anatomy +def: "Region of the median fin fold that develops into the dorsal fin." [ZFIN:curator] +synonym: "dorsal fin-fold" EXACT [TAO:0000102] +xref: ZFA:0000102 +is_a: UBERON:0000481 ! multi-tissue structure +relationship: part_of UBERON:2000040 ! median fin fold +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000103 +name: supramaxilla +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that is located on the dorsal margin of the maxilla, usually at the dorso-posterior region of maxilla. The supramaxilla is a paired bone." [TAO:ga_tg] +comment: The supramaxilla may be present as one or two bones. +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0011597 ! bone of upper jaw +relationship: contributes_to_morphology_of UBERON:0001708 ! jaw skeleton +relationship: part_of UBERON:0003113 ! dermatocranium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000104 +name: suprapreopercle +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that is located dorsal to the preopercle or lies on the antero-dorsal corner of the opercle, and encloses the upper section of the preopercular canal. The suprapreopercle is paired." [TAO:GA_TG] +comment: Synonyms: supraopercle (Roberts 1969) supraopercular bone (Buckup 1998) +synonym: "supraopercle" EXACT [TAO:0000104] +synonym: "supraopercular bone" EXACT [TAO:0000104] +synonym: "suprapreopercles" EXACT PLURAL [TAO:0000104] +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:0003113 ! dermatocranium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000106 +name: extension +namespace: uberon/phenoscape-anatomy +def: "The posterior elongated region of the yolk cell that forms during the segmentation period. Kimmel et al, 1995." [ZFIN:curator] +synonym: "yolk extension" EXACT [ZFIN:ZDB-PUB-961014-576] +xref: ZFA:0000106 +is_a: UBERON:0000475 ! organism subdivision +relationship: part_of UBERON:2000084 ! yolk +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000116 +name: macula lagena +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000116 +is_a: UBERON:0000054 ! macula +relationship: part_of UBERON:0002518 ! otolith organ +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000120 +name: lateral line ganglion +def: "Ganglion that develops from a cranial ectodermal placode and contains sensory neurons that innervate a lateral line." [ZFA:0000120, ZFA:curator] +subset: efo_slim +synonym: "lateral line ganglia" EXACT PLURAL [TAO:0000120] +synonym: "LLG" EXACT ABBREVIATION [TAO:0000120] +xref: EFO:0003493 +xref: TAO:0000120 +xref: XAO:0004457 +xref: ZFA:0000120 +is_a: UBERON:0001714 ! cranial ganglion +is_a: UBERON:0004121 ! ectoderm-derived structure +intersection_of: UBERON:0001714 ! cranial ganglion +intersection_of: extends_fibers_into UBERON:0008906 ! lateral line nerve +relationship: develops_from UBERON:0009128 ! lateral line placode +relationship: extends_fibers_into UBERON:0008906 ! lateral line nerve +relationship: part_of UBERON:0002540 ! lateral line system + +[Term] +id: UBERON:2000125 +name: mandibular lateral line neuromast +namespace: uberon/phenoscape-anatomy +def: "Neuromast that is part of the mandibular lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] +synonym: "neuromast mandibular" EXACT [TAO:0000125] +synonym: "neuromasts mandibular" EXACT PLURAL [TAO:0000125] +xref: ZFA:0000125 +is_a: UBERON:0008904 ! neuromast +relationship: part_of UBERON:2000259 ! mandibular lateral line +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000127 +name: antorbital +namespace: uberon/phenoscape-anatomy +def: "Dermal bone positioned as the first bone of the infraorbital series. The antorbital articulates with the lacrimal or infraorbital 1 anteroventrally and the supraorbital posterodorsally. The antorbital is a paired bone." [TAO:GA_TG] +comment: The antorbital in some teleosts fuses with the lacrimal. The antorbital contains the end branch of the infraorbital canal or neuromasts for the infraorbital canal in basal teleosts such as elopiformes, some osteoglossomorphs and fossil basal teleosts. +synonym: "adnasal" EXACT [TAO:Goodrich_1930, TAO:Regan_1923] +synonym: "lateral rostral" EXACT [TAO:Jollie_1984] +synonym: "perorbital" EXACT [TAO:Bridge_1877] +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0010321 ! skeletal element of eye region +relationship: part_of UBERON:0001697 ! orbit of skull +relationship: part_of UBERON:2001709 ! infraorbital series +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000136 +name: otic lateral line neuromast +namespace: uberon/phenoscape-anatomy +def: "Neuromast that is part of the otic lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] +synonym: "neuromast otic" EXACT [TAO:0000136] +synonym: "neuromasts otic" EXACT PLURAL [TAO:0000136] +xref: ZFA:0000136 +is_a: UBERON:0008904 ! neuromast +relationship: part_of UBERON:2000464 ! otic lateral line +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000139 +name: immature otolith +namespace: uberon/phenoscape-anatomy +def: "Brightly refractile stone-like organ within the otic vesicle and positioned over a sensory macula; two form in each vesicle during the late segmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for otolith by T. Whitfield.)" [ZFIN:curator] +synonym: "immature otoliths" EXACT PLURAL [TAO:0000139] +is_a: UBERON:0003103 ! compound organ +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0003051 ! ear vesicle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000147 +name: obsolete presumptive epidermis +namespace: uberon/phenoscape-anatomy +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000156 +name: somite 20 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000156 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000157 +name: somite 30 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000157 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000164 +name: ventral mesenchyme +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000164 +is_a: UBERON:0003104 ! mesenchyme +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000165 +name: inferior lobe +namespace: uberon/phenoscape-anatomy +synonym: "inferior lobes" EXACT PLURAL [TAO:0000165] +xref: ZFA:0000165 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:2000347 ! dorsal zone of median tuberal portion of hypothalamus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000167 +name: obsolete anal fin skeleton +namespace: uberon/phenoscape-anatomy +def: "Median fin skeleton that is located posterior to the anus." [TAO:wd] +is_obsolete: true +replaced_by: UBERON:4000166 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000168 +name: anterior macula +namespace: uberon/phenoscape-anatomy +def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [ZFIN:curator] +synonym: "am" EXACT [TAO:0000168] +xref: ZFA:0000168 +is_a: UBERON:0000054 ! macula +relationship: develops_from UBERON:2001096 ! immature anterior macula +relationship: part_of UBERON:0002518 ! otolith organ +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000171 +name: interhyal bone +namespace: uberon/phenoscape-anatomy +def: "Replacement bone that is bilaterally paired and articulates dorsally with the hyosymplectic cartilage or the articulation of the hyomandibula and symplectic." [TAO:wd] +comment: It articulates ventrally with the posterior end of the posterior ceratohyal. +synonym: "stylohyal bone" EXACT [TAO:0000171] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:2001892 ! interhyal element +relationship: develops_from UBERON:2001511 ! interhyal cartilage +relationship: overlaps UBERON:2001841 ! interhyal-epihyal joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000174 +name: caudal cerebellar tract +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000174 +is_a: UBERON:0002317 ! white matter of cerebellum +relationship: part_of UBERON:2000318 ! brainstem and spinal white matter +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000175 +name: posterior lateral line nerve +namespace: uberon/phenoscape-anatomy +def: "Cranial nerve which enters the brain between cranial nerves VIII and IX; contains afferents and sensory efferents to the posterior lateral line ganglion and middle ganglion. Fibers from the posterior lateral line ganglion innervate the occipital dorsal lateral line and trunk lateral lines." [ZFIN:curator] +synonym: "caudal lateral line nerve" EXACT [TAO:0000175] +xref: ZFA:0000175 +is_a: UBERON:0008906 ! lateral line nerve +relationship: part_of UBERON:2001471 ! posterior lateral line system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000176 +name: lateral entopeduncular nucleus +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0009663 ! telencephalic nucleus +relationship: part_of UBERON:0000204 ! ventral part of telencephalon +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000177 +name: caudal oblique +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000177 +is_a: UBERON:0000933 ! pharyngeal muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000178 +name: caudal peduncle +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000178 +is_a: UBERON:0003102 ! surface structure +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000181 +name: obsolete caudal zone of D +namespace: uberon/phenoscape-anatomy +synonym: "posterior zone of dorsal telencephalic area" EXACT [TAO:0000181] +xref: ZFA:0000181 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000182 +name: central caudal thalamic nucleus +namespace: uberon/phenoscape-anatomy +synonym: "central posterior thalamic nucleus" EXACT [TAO:0000182] +xref: ZFA:0000182 +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000183 +name: central pretectum +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000183 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0001944 ! pretectal region +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000185 +name: commissura rostral, pars ventralis +namespace: uberon/phenoscape-anatomy +def: "Part of the anterior commissure which abuts the preoptic region dorsally." [ISBN:3764351209] +xref: ZFA:0000185 +is_a: UBERON:0002437 ! cerebral hemisphere white matter +relationship: part_of UBERON:0000935 ! anterior commissure +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000187 +name: lateral granular eminence +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:2000307 ! vestibulolateralis lobe +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000188 +name: corpus cerebelli +namespace: uberon/phenoscape-anatomy +synonym: "cerebellar corpus" EXACT [TAO:0000188] +synonym: "corpus cerebellum" EXACT [TAO:0000188] +xref: ZFA:0000188 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002037 ! cerebellum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000193 +name: diffuse nuclei +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000193 +is_a: UBERON:0006568 ! hypothalamic nucleus +relationship: part_of UBERON:2000165 ! inferior lobe +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000194 +name: dorsal accessory optic nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000194 +is_a: UBERON:0035566 ! central pretectal nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000195 +name: dorsal depressor muscle +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000195 +is_a: UBERON:2005270 ! depressor muscle +relationship: part_of UBERON:2000648 ! dorsal fin musculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000196 +name: dorsal hypohyal bone +namespace: uberon/phenoscape-anatomy +def: "Replacement bone that is bilaterally paired and articulates with the anterior ceratohyal posteriorly and the ventral hypohyal bone ventrally." [ZFIN:curator] +synonym: "dorsal hypohyals" EXACT PLURAL [TAO:0000196] +synonym: "dorsohyal" EXACT [TAO:0000196] +synonym: "upper hypohyal" EXACT [TAO:0000196] +xref: ZFA:0000196 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0011610 ! ceratohyal cartilage +relationship: develops_from UBERON:0011612 ! hypohyal cartilage +relationship: overlaps UBERON:2001843 ! ceratohyal-dorsal hypohyal joint +relationship: overlaps UBERON:2001845 ! dorsal hypohyal-ventral hypohyal joint +relationship: overlaps UBERON:2001847 ! dorsal hypohyal-urohyal joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000197 +name: obsolete dorsal nucleus +namespace: uberon/phenoscape-anatomy +is_obsolete: true +consider: UBERON:0008993 +consider: ZFA:0000197 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000199 +name: dorsal periventricular hypothalamus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000199 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:2000347 ! dorsal zone of median tuberal portion of hypothalamus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000201 +name: dorsal transverse +namespace: uberon/phenoscape-anatomy +synonym: "transversus dorsalis" EXACT [TAO:0000201] +xref: ZFA:0000201 +is_a: UBERON:0000933 ! pharyngeal muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000202 +name: efferent portion of pharyngeal arch artery +def: "A section of a pharyngeal arch artery that carries blood away from the gills." [ISBN:0073040584] +synonym: "efferent branchial artery" EXACT [ZFA:0000202] +synonym: "efferent portion of branchial artery" EXACT [] +xref: TAO:0000202 +xref: ZFA:0000202 +is_a: UBERON:0003469 ! respiratory system artery +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0004363 ! pharyngeal arch artery +intersection_of: drains UBERON:0011150 ! pharyngeal arch derived gill +relationship: branching_part_of UBERON:0004363 ! pharyngeal arch artery +relationship: drains UBERON:0011150 ! pharyngeal arch derived gill +relationship: part_of UBERON:0004363 ! pharyngeal arch artery + +[Term] +id: UBERON:2000203 +name: rhinosphenoid +namespace: uberon/phenoscape-anatomy +def: "An endochondral bone which is located anterior to the orbitosphenoid and medial to the paired lateral ethmoid. Rhinosphenoid is a median bone." [TAO:wd] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0010321 ! skeletal element of eye region +is_a: UBERON:0011164 ! neurocranium bone +relationship: part_of UBERON:0001697 ! orbit of skull +relationship: part_of UBERON:0003111 ! sphenoid region +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000205 +name: external ventral flexor +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000205 +is_a: UBERON:0000366 ! flexor muscle +relationship: part_of UBERON:2000628 ! caudal fin musculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000209 +name: lateral preglomerular nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000209 +is_a: UBERON:2002226 ! preglomerular nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000210 +name: gigantocellular part of magnocellular preoptic nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000210 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001928 ! preoptic area +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000211 +name: gill lamella +namespace: uberon/phenoscape-anatomy +synonym: "gill lamellae" EXACT PLURAL [TAO:0000211] +xref: ZFA:0000211 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0011150 ! pharyngeal arch derived gill +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000212 +name: granular eminence +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000212 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002037 ! cerebellum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000214 +name: hypobranchial vessel +namespace: uberon/phenoscape-anatomy +synonym: "hypobranchial vessels" EXACT PLURAL [TAO:0000214] +xref: ZFA:0000214 +is_a: UBERON:0003498 ! heart blood vessel +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000216 +name: infracarinalis +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000216 +is_a: UBERON:0001774 ! skeletal muscle of trunk +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000221 +name: internal levator +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000221 +is_a: UBERON:0000933 ! pharyngeal muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000222 +name: isthmic primary nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000222 +is_a: UBERON:0004132 ! trigeminal sensory nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000223 +name: infraorbital 1 +namespace: uberon/phenoscape-anatomy +def: "Infraorbital in fishes that is the first (anteriormost) bone of the infraorbital series." [ZFIN:curator] +comment: Suborbital and infraorbital 1 are synonymized by some authors (e.g., Cuvier), however, a suborbital bone in fishes has a different meaning than an infraorbital 1; it is a bone(s) that it is placed between the postero-dorsal infraorbitals and preopercle. A suborbital (also named postorbital by some authors) is not present in extant teleosts with the exception of Arapaima where it is occasionally present. Suborbital bones are found in some fossil basal teleosts. [G. Arratia] +synonym: "lachrymal" EXACT [PSPUB:0000119] +synonym: "lachrymal bone" RELATED [TAO:0000223] +synonym: "lacrimal bone" RELATED [TAO:0000223] +synonym: "lacrymal" EXACT [PSPUB:0000164] +synonym: "lacrymal bone" RELATED [TAO:0000223] +synonym: "suborbital" EXACT [TAO:0000223] +xref: ZFA:0000223 +is_a: UBERON:2000376 ! infraorbital +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000224 +name: quadrate ventral process +namespace: uberon/phenoscape-anatomy +def: "Process that is the ventral, posteriorly-oriented bony extension of the quadrate." [TAO:wd] +xref: ZFA:0001593 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0006597 ! quadrate bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000225 +name: lateral crista primordium +namespace: uberon/phenoscape-anatomy +synonym: "lateral crista primordia" EXACT PLURAL [TAO:0000225] +xref: ZFA:0000225 +is_a: UBERON:0003240 ! epithelium of lateral semicircular canal +is_a: UBERON:0003249 ! epithelium of otic placode +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000226 +name: lateral ethmoid bone +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone that separates the olfactory region from the orbit, extends medially to meet its fellow medially below the frontal bones and is bordered by the mesethmoid anteriorly. It may articulate with the autopalatine and infraorbital 1 laterally. The lateral ethmoid is paired." [ZFIN:curator] +synonym: "lateral ethmoids" EXACT PLURAL [TAO:0000226] +synonym: "parethmoïde" EXACT [PSPUB:0000141] +synonym: "pleurethmoïde" EXACT [PSPUB:0000134] +synonym: "éthmoïde latéral" EXACT [PSPUB:0000164] +xref: ZFA:0000226 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:4300111 ! lateral ethmoid element +relationship: develops_from UBERON:0006604 ! lamina orbitonasalis +relationship: overlaps UBERON:0001703 ! neurocranium +relationship: overlaps UBERON:2001608 ! autopalatine-lateral ethmoid joint +relationship: overlaps UBERON:2001679 ! mesethmoid-lateral ethmoid joint +relationship: overlaps UBERON:2001941 ! orbitosphenoid-lateral ethmoid joint +relationship: overlaps UBERON:2002032 ! lateral ethmoid-frontal joint +relationship: part_of UBERON:0003112 ! olfactory region +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000228 +name: lateral line primordium +namespace: uberon/phenoscape-anatomy +synonym: "lateral line primordia" EXACT PLURAL [TAO:0000228] +synonym: "llp" EXACT [TAO:0000228] +xref: ZFA:0000228 +is_a: UBERON:0000479 ! tissue +relationship: part_of UBERON:0002540 ! lateral line system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000230 +name: longitudinal hypochordal +namespace: uberon/phenoscape-anatomy +synonym: "hypochordal longitudinalis" EXACT [] +xref: ZFA:0000230 +is_a: UBERON:0014892 ! skeletal muscle organ +relationship: part_of UBERON:2000628 ! caudal fin musculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000232 +name: lateral semicircular canal primordium +namespace: uberon/phenoscape-anatomy +synonym: "lateral semicircular canal primordia" EXACT PLURAL [TAO:0000232] +xref: ZFA:0000232 +is_a: UBERON:2002215 ! otic vesicle protrusion +relationship: part_of UBERON:0001840 ! semicircular canal +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000233 +name: lower oral valve +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000233 +is_a: UBERON:0000479 ! tissue +relationship: adjacent_to UBERON:2000695 ! labial cavities +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000234 +name: macula neglecta +namespace: uberon/phenoscape-anatomy +def: "Macula positioned on the floor of the utricle adjacent to the utriculosaccular foramen at the base of the common crus." [ZFA:0000234] +xref: ZFA:0000234 +is_a: UBERON:0000054 ! macula +relationship: develops_from UBERON:2000558 ! posterior macula +relationship: part_of UBERON:0002518 ! otolith organ +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000235 +name: obsolete magnocellular superficial pretectal nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000235 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000237 +name: obsolete medial forebrain bundle diencephalon +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000237 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000238 +name: olfactory tract linking bulb to ipsilateral ventral telencephalon +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000238 +is_a: UBERON:0002265 ! olfactory tract +intersection_of: UBERON:0002265 ! olfactory tract +intersection_of: overlaps UBERON:0000204 ! ventral part of telencephalon +relationship: overlaps UBERON:0000204 ! ventral part of telencephalon +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000239 +name: mesocoracoid bone +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone that articulates laterally with the medial surface of the cleithrum and ventro-medially with the scapula and coracoid. Meoscoracoid bone is a small, arch-like bone that develops from the mesocoracoid cartilage. Mesocoracoid bone is paired." [TAO:wd] +synonym: "mesocoracoideum" RELATED [TAO:0000239] +xref: ZFA:0000239 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:4300092 ! mesocoracoid element +intersection_of: UBERON:4300092 ! mesocoracoid element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2001537 ! mesocoracoid cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000240 +name: metapterygoid +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone that forms the posteriormost element of the palatal complex. It overlies the quadrate and symplectic, posteriorly it articulates with the hyomandibula and anteriorly with the entopterygoid and ectopterygoid. It curves dorsally to form the posteroventral surface of the orbit. The metapterygoid is paired." [ZFIN:curator] +synonym: "metapterygoids" EXACT PLURAL [TAO:0000240] +xref: ZFA:0000240 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0011597 ! bone of upper jaw +relationship: develops_from UBERON:0004752 ! palatoquadrate cartilage +relationship: overlaps UBERON:2001803 ! quadrate-metapterygoid joint +relationship: overlaps UBERON:2001979 ! hyomandibula-metapterygoid joint +relationship: part_of UBERON:0011085 ! palatoquadrate arch +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000241 +name: midline column +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000241 +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0002559 ! medullary reticular formation +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000245 +name: nucleus of the descending root +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000245 +is_a: UBERON:0004132 ! trigeminal sensory nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000246 +name: obsolete nucleus taeniae +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000246 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000248 +name: magnocellular preoptic nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000248 +is_a: UBERON:0007251 ! preoptic nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000250 +name: opercle +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that forms the postero-dorsal part of the opercular series. The opercle articulates with the hyomandibula antero-dorsally and with the subopercle ventrally. The opercle is a paired bone." [TAO:GA_TG] +comment: The opercle is usually a large, flat bone that may be partially covered by the posterior region of the preopercle. +synonym: "opercles" EXACT PLURAL [TAO:0000250] +synonym: "operculare" EXACT [TAO:0000250] +synonym: "operculum" EXACT [TAO:0000250] +xref: ZFA:0000250 +is_a: UBERON:0008907 ! dermal bone +relationship: overlaps UBERON:2001710 ! opercle-interopercle joint +relationship: overlaps UBERON:2002282 ! preopercle-opercle joint +relationship: overlaps UBERON:2005265 ! hyomandibula-opercle joint +relationship: part_of UBERON:0003113 ! dermatocranium +relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton +relationship: part_of UBERON:2000555 ! opercular flap +relationship: part_of UBERON:2001875 ! opercular series +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000251 +name: adipose fin +namespace: uberon/phenoscape-anatomy +def: "A fin that is fleshy, lacks supporting rays, and is located posterior to the dorsal fin." [TAO:wd] +is_a: UBERON:4000162 ! median fin +intersection_of: UBERON:0008897 ! fin +intersection_of: has_skeleton UBERON:4500004 ! adipose fin skeleton +relationship: develops_from UBERON:2000102 ! dorsal fin fold +relationship: has_skeleton UBERON:4500004 ! adipose fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000256 +name: obsolete pars subcommissuralis of V +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000256 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000259 +name: mandibular lateral line +namespace: uberon/phenoscape-anatomy +def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] +xref: ZFA:0000259 +is_a: UBERON:2001470 ! anterior lateral line +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000261 +name: pharyngohyoid +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000261 +is_a: UBERON:0000933 ! pharyngeal muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000264 +name: preopercle +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that is part of the opercular series and bears the preopercular sensory canal. The preopercle is a paired bone and typically L-shaped, with the horizontal limb overlying the interopercle and the vertical limb overlying the opercle." [TAO:wd] +synonym: "preopercles" EXACT PLURAL [TAO:0000264] +synonym: "preoperculum" EXACT [TAO:0000264] +xref: ZFA:0000264 +is_a: UBERON:0008907 ! dermal bone +relationship: overlaps UBERON:2002282 ! preopercle-opercle joint +relationship: part_of UBERON:0003113 ! dermatocranium +relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton +relationship: part_of UBERON:2000555 ! opercular flap +relationship: part_of UBERON:2001875 ! opercular series +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000265 +name: obsolete presumptive dorsal mesoderm +namespace: uberon/phenoscape-anatomy +def: "Portion of presumptive mesoderm fated to become dorsal mesoderm." [ZFA:0000265] +xref: ZFA:0000265 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000266 +name: obsolete pretecto-mamillary tract +namespace: uberon/phenoscape-anatomy +synonym: "pretectomamillary tract" EXACT [TAO:0000266] +xref: ZFA:0000266 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000267 +name: primary olfactory fiber layer +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000267 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002264 ! olfactory bulb +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000268 +name: anal fin proximal radial bone +namespace: uberon/phenoscape-anatomy +def: "anal fin proximal radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +synonym: "basal radial of anal fin" EXACT [TAO:0000268] +synonym: "proximal anal-fin radial" EXACT [TAO:0000268] +xref: ZFA:0000268 +is_a: UBERON:2001671 ! anal fin radial bone +is_a: UBERON:2100268 ! anal fin proximal radial element +intersection_of: UBERON:2100268 ! anal fin proximal radial element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2200268 ! anal fin proximal radial cartilage + +[Term] +id: UBERON:2000269 +name: inferior ventral flexor +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000269 +is_a: UBERON:0000366 ! flexor muscle +relationship: part_of UBERON:2000628 ! caudal fin musculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000271 +name: radial bone +namespace: uberon/phenoscape-anatomy +def: "radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +comment: Radials may be cartilaginous or bony; always present at the base of fins; typically support lepidotrichia. +synonym: "actinost" RELATED [TAO:0000271] +synonym: "radials" EXACT PLURAL [TAO:0000271] +xref: ZFA:0000271 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004376 ! fin bone +is_a: UBERON:2100271 ! radial element +intersection_of: UBERON:2100271 ! radial element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2200271 ! radial cartilage + +[Term] +id: UBERON:2000274 +name: rostral octaval nerve sensory nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000274 +is_a: UBERON:2000401 ! octaval nerve sensory nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000276 +name: rostrolateral thalamic nucleus of Butler & Saidel +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000276 +is_a: UBERON:0015234 ! nucleus of ventral thalamus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000278 +name: secondary gustatory nucleus medulla oblongata +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000278 +is_a: UBERON:0007635 ! nucleus of medulla oblongata +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000280 +name: medial division +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000280 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:2000603 ! valvula cerebelli +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000281 +name: obsolete hair cell posterior macula +namespace: uberon/phenoscape-anatomy +def: "Specialized neuronal receptor cells of the lateral line and acoustico-vestibular systems. Kimmel et al, 1995. (Also see Anatomical Atlas entry for hair cells by T. Whitfield.)" [ZFIN:curator] +synonym: "sensory hair cells posterior macula" EXACT PLURAL [TAO:0000281] +xref: ZFA:0000281 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000283 +name: obsolete sternohyoid +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000283 +is_obsolete: true +replaced_by: UBERON:0001107 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000284 +name: subopercle +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that is part of the opercular series, lying below the opercle. The subopercle is paired and is typically a thin bone." [TAO:wd] +synonym: "subopercles" EXACT PLURAL [TAO:0000284] +xref: ZFA:0000284 +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:0003113 ! dermatocranium +relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton +relationship: part_of UBERON:2000555 ! opercular flap +relationship: part_of UBERON:2001875 ! opercular series +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000285 +name: superficial adductor +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000285 +is_a: UBERON:0011145 ! adductor muscle +is_a: UBERON:0014794 ! pectoral appendage muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000286 +name: superficial lateralis (teleost) +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000286 +is_a: UBERON:0001774 ! skeletal muscle of trunk +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000287 +name: superior dorsal flexor +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000287 +is_a: UBERON:0000366 ! flexor muscle +relationship: part_of UBERON:2000628 ! caudal fin musculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000288 +name: supracarinalis +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000288 +is_a: UBERON:0001774 ! skeletal muscle of trunk +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000289 +name: preopercle horizontal limb +namespace: uberon/phenoscape-anatomy +def: "A dermal bone that is the lower, horizontal portion of the preopercle bone." [TAO:wd] +synonym: "preopercle horizontal arm" EXACT [TAO:0000289] +synonym: "preopercle lower limb" EXACT [TAO:0000289] +xref: ZFA:0001594 +is_a: UBERON:0008907 ! dermal bone +relationship: overlaps UBERON:2005268 ! preopercle horizontal limb-symplectic joint +relationship: part_of UBERON:2000264 ! preopercle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000291 +name: medial octavolateralis nucleus +namespace: uberon/phenoscape-anatomy +def: "Lateral line sensory nucleus located in the cerebellum that processes sensory input from the lateral line." [ZFA:0000291] +xref: ZFA:0000291 +is_a: UBERON:2000381 ! lateral line sensory nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000293 +name: synencephalon +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000293 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0001894 ! diencephalon +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000294 +name: torus lateralis +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000294 +is_a: UBERON:0006569 ! diencephalic nucleus +relationship: part_of UBERON:2000633 ! caudal tuberculum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000296 +name: uncrossed tecto-bulbar tract +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000296 +is_a: UBERON:0002164 ! tectobulbar tract +relationship: part_of UBERON:2000318 ! brainstem and spinal white matter +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000297 +name: vagal lobe +namespace: uberon/phenoscape-anatomy +synonym: "nX" RELATED [TAO:0000297] +is_a: UBERON:0007635 ! nucleus of medulla oblongata +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000298 +name: vent +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000298 +is_a: UBERON:0003102 ! surface structure +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000299 +name: obsolete ventral entopeduncular nucleus V +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000299 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000300 +name: ventral hypohyal bone +namespace: uberon/phenoscape-anatomy +def: "Replacement bone that is bilaterally paired and articulates with the ceratohyal bone posteriorly and the dorsal hypohyal bone dorsally." [ZFIN:curator] +synonym: "lower hypohyal" EXACT [TAO:0000300] +synonym: "ventral hypohyals" EXACT PLURAL [TAO:0000300] +synonym: "ventrohyal" EXACT [TAO:0000300] +xref: ZFA:0000300 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0011610 ! ceratohyal cartilage +relationship: develops_from UBERON:0011612 ! hypohyal cartilage +relationship: overlaps UBERON:2001844 ! ceratohyal-ventral hypohyal joint +relationship: overlaps UBERON:2001845 ! dorsal hypohyal-ventral hypohyal joint +relationship: overlaps UBERON:2001846 ! inter-ventral hypohyal joint +relationship: overlaps UBERON:2001848 ! ventral hypohyal-urohyal joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000302 +name: obsolete ventral nucleus +namespace: uberon/phenoscape-anatomy +is_obsolete: true +consider: UBERON:0008993 +consider: ZFA:0000302 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000305 +name: ventral sulcus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000305 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0006846 ! surface groove +relationship: part_of UBERON:0001898 ! hypothalamus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000307 +name: vestibulolateralis lobe +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000307 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002037 ! cerebellum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000309 +name: external yolk syncytial layer +namespace: uberon/phenoscape-anatomy +def: "The portion of the YSL that is outside of the blastoderm margin during epiboly. Kimmel et al, 1995." [ZFIN:curator] +synonym: "E-YSL" EXACT [ZFIN:ZDB-PUB-961014-576] +xref: ZFA:0000309 +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:2000088 ! yolk syncytial layer +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000311 +name: adductor mandibulae complex +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000311 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010959 ! craniocervical muscle +is_a: UBERON:0011145 ! adductor muscle +relationship: develops_from UBERON:0011683 ! adductor mandibulae +relationship: part_of UBERON:0011648 ! jaw muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000313 +name: anal inclinator +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000313 +is_a: UBERON:2005276 ! inclinator muscle +relationship: part_of UBERON:2001154 ! anal fin musculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000315 +name: asteriscus +namespace: uberon/phenoscape-anatomy +synonym: "lagenar otolith" EXACT [TAO:0000315] +synonym: "lagenolith" EXACT [TAO:0000315] +xref: ZFA:0000315 +is_a: UBERON:0002280 ! otolith +intersection_of: UBERON:0002280 ! otolith +intersection_of: located_in UBERON:0001844 ! cochlea +relationship: located_in UBERON:0001844 ! cochlea +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000318 +name: brainstem and spinal white matter +namespace: uberon/phenoscape-anatomy +def: "CNS white matter that is part of the brain stem or spinal cord[ZFIN]." [] +synonym: "brain stem/spinal tracts and commissures" EXACT PLURAL [TAO:0000318] +xref: ZFA:0000318 +is_a: UBERON:0002316 ! white matter +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000319 +name: branchiostegal membrane +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000319 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0011150 ! pharyngeal arch derived gill +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000321 +name: caudal levator +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000321 +is_a: UBERON:0000933 ! pharyngeal muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000322 +name: caudal octaval nerve sensory nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000322 +is_a: UBERON:2000401 ! octaval nerve sensory nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000324 +name: caudal periventricular hypothalamus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000324 +is_a: UBERON:0006568 ! hypothalamic nucleus +relationship: part_of UBERON:2000634 ! caudal zone of median tuberal portion of hypothalamus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000331 +name: obsolete commissure infima of Haller +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000331 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000335 +name: crossed tecto-bulbar tract +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000335 +is_a: UBERON:0002164 ! tectobulbar tract +relationship: part_of UBERON:2000318 ! brainstem and spinal white matter +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000336 +name: preopercle vertical limb +namespace: uberon/phenoscape-anatomy +def: "A dermal bone that is the upper, vertical portion of the preopercle bone." [TAO:wd] +synonym: "ascending arm of preopercle" EXACT [TAO:0000336] +synonym: "preopercle upper limb" EXACT [TAO:0000336] +synonym: "preopercle vertical arm " EXACT [TAO:0000336] +xref: ZFA:0001595 +is_a: UBERON:0008907 ! dermal bone +relationship: overlaps UBERON:2005278 ! preopercle vertical limb-hyomandibula joint +relationship: part_of UBERON:2000264 ! preopercle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000337 +name: basioccipital posterodorsal region +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone which is the posterodorsal region of the basioccipital bone." [TAO:wd] +xref: ZFA:0001598 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011164 ! neurocranium bone +relationship: part_of UBERON:0001692 ! basioccipital bone +relationship: part_of UBERON:2001620 ! lagenar capsule +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000340 +name: obsolete dorsal entopeduncular nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000340 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000341 +name: dorsal flexor +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000341 +is_a: UBERON:0000366 ! flexor muscle +relationship: part_of UBERON:2000628 ! caudal fin musculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000342 +name: dorsal inclinator muscle +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000342 +is_a: UBERON:2005276 ! inclinator muscle +relationship: part_of UBERON:2000648 ! dorsal fin musculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000343 +name: obsolete dorsal nucleus of V +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000343 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000347 +name: dorsal zone of median tuberal portion of hypothalamus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000347 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:2000392 ! median tuberal portion +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000348 +name: exoccipital posteroventral region +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone which is the posterodorsal region of the basioccipital bone." [TAO:wd] +xref: ZFA:0001597 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011164 ! neurocranium bone +relationship: part_of UBERON:0001693 ! exoccipital bone +relationship: part_of UBERON:2001620 ! lagenar capsule +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000349 +name: epaxialis +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000349 +is_a: UBERON:0001774 ! skeletal muscle of trunk +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000350 +name: epipleural +namespace: uberon/phenoscape-anatomy +def: "Epipleurals lie below the horizontal septum and are posteroventrally directed. There are ossified epipleurals in certain ostariophysans. In many lower elopocephalan teleosts including ostariophysans the epipleural bones develop an anterodorsal branch so that they are forked proximally." [ZFIN:curator] +synonym: "epipleurals" EXACT PLURAL [TAO:0000350] +synonym: "pleuroïde" EXACT [PSPUB:0000153] +synonym: "épipleural" EXACT [PSPUB:0000164] +synonym: "épipleure" EXACT [PSPUB:0000133] +xref: ZFA:0000350 +is_a: UBERON:2000526 ! intermuscular bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000352 +name: external cellular layer +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000352 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002264 ! olfactory bulb +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000356 +name: gill raker +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that is a projection present on the inner surface of a branchial arch." [ZFIN:curator] +synonym: "branchiocténie" EXACT [PSPUB:0000133] +synonym: "branchiospine" EXACT [PSPUB:0000164] +synonym: "gill rakers" EXACT PLURAL [TAO:0000356] +synonym: "gill-raker" EXACT [TAO:0000356] +synonym: "gillraker" EXACT [TAO:0000356] +xref: ZFA:0000356 +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000358 +name: granular layer corpus cerebelli +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000358 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:2000188 ! corpus cerebelli +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000362 +name: hypaxialis +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000362 +is_a: UBERON:0001774 ! skeletal muscle of trunk +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000363 +name: hypobranchial bone +namespace: uberon/phenoscape-anatomy +def: "Replacement bone that is bilaterally paired and articulates medially with a median skeletal element and laterally with a ceratobranchial cartilage or bone." [ZFIN:curator] +xref: ZFA:0000363 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:2001893 ! hypobranchial element +relationship: develops_from UBERON:2001522 ! hypobranchial cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000364 +name: hypural +namespace: uberon/phenoscape-anatomy +def: "Laterally flattened haemal spine of an ural vertebra that lacks its arch and supports a few principal caudal lepidotrichia distally. A hypural may articulate or fuse with its ural centrum proximally or may lie ventral to the notochord. A hypural is an unpaired median bone that ossifies perichondrally. (Modified from Monod, 1968 and Arratia and Schultze, 1992)." [TAO:GA_TG, ZFIN:curator] +synonym: "hyp" EXACT [TAO:0000364] +synonym: "hypuralia" EXACT [TAO:0000364] +synonym: "hypurals" EXACT PLURAL [TAO:0000364] +xref: ZFA:0000364 +is_a: UBERON:0004376 ! fin bone +is_a: UBERON:2001364 ! hemal spine +relationship: part_of UBERON:2002067 ! upper hypural set +relationship: part_of UBERON:2002068 ! lower hypural set +relationship: part_of UBERON:2002162 ! ural vertebra +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000371 +name: internal pharyngoclavicularis +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000371 +is_a: UBERON:0000933 ! pharyngeal muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000372 +name: interpeduncular nucleus medulla oblongata +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000372 +is_a: UBERON:0007635 ! nucleus of medulla oblongata +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000373 +name: dorsal fin actinotrichium +namespace: uberon/phenoscape-anatomy +def: "Actinotrichium that is part of the dorsal fin skeleton." [TAO:wd] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005174 ! dorsal region element +is_a: UBERON:2000089 ! actinotrichium +intersection_of: UBERON:2000089 ! actinotrichium +intersection_of: part_of UBERON:0003097 ! dorsal fin +relationship: part_of UBERON:4000168 ! dorsal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000375 +name: anal fin actinotrichium +namespace: uberon/phenoscape-anatomy +def: "Actinotrichium that is part of the anal fin skeleton." [TAO:wd] +xref: ZFA:0005398 +is_a: UBERON:2000089 ! actinotrichium +intersection_of: UBERON:2000089 ! actinotrichium +intersection_of: part_of UBERON:4000163 ! anal fin +relationship: part_of UBERON:4000166 ! anal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000376 +name: infraorbital +namespace: uberon/phenoscape-anatomy +alt_id: UBERON:2000489 +def: "Dermal bone that is located anterior, ventral or posterior to the eye. Infraorbital bones may or may not contain the infraorbital sensory canal. Infraorbital bones are numbered starting with the anteriormost element of the series." [ZFIN:curator] +synonym: "circumorbital series" EXACT [TAO:0000376] +synonym: "circumorbitals" EXACT PLURAL [TAO:0000376] +synonym: "infraorbital series" RELATED [TAO:0000376] +synonym: "infraorbitals" EXACT PLURAL [TAO:0000376] +xref: ZFA:0000376 +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0010321 ! skeletal element of eye region +relationship: part_of UBERON:0001697 ! orbit of skull +relationship: part_of UBERON:2001709 ! infraorbital series +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000379 +name: obsolete lateral forebrain bundle diencephalon +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000379 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000381 +name: lateral line sensory nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000381 +is_a: UBERON:0007635 ! nucleus of medulla oblongata +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000384 +name: levator arcus palatini +namespace: uberon/phenoscape-anatomy +def: "Jaw muscle that connects the sphenotic to the metapterygoid and hyomandibula and promotes the elevation/abduction of the suspensorium." [PMID:18307809] +xref: ZFA:0000384 +is_a: UBERON:0011648 ! jaw muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000387 +name: obsolete nucleus motorius of nervi vagi +namespace: uberon/phenoscape-anatomy +is_obsolete: true +replaced_by: UBERON:0011778 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000388 +name: medial caudal lobe +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000388 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:2000307 ! vestibulolateralis lobe +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000389 +name: medial funicular nucleus medulla oblongata +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000389 +is_a: UBERON:0007635 ! nucleus of medulla oblongata +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000390 +name: medial preglomerular nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000390 +is_a: UBERON:2002226 ! preglomerular nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000391 +name: obsolete medial zone of D +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000391 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000392 +name: median tuberal portion +namespace: uberon/phenoscape-anatomy +def: "Multi-tissue structure which is part of the hypothalamus and consists of caudal and ventral zones, and is separated from the dorsal hypothalamic zone by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209] +xref: ZFA:0000392 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0001898 ! hypothalamus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000394 +name: molecular layer corpus cerebelli +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000394 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:2000188 ! corpus cerebelli +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000395 +name: obsolete muscle pioneer somite 2 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 2" EXACT PLURAL [TAO:0000395] +xref: ZFA:0000395 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000397 +name: nucleus subglomerulosis +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000397 +is_a: UBERON:0006569 ! diencephalic nucleus +relationship: part_of UBERON:2000633 ! caudal tuberculum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000398 +name: nucleus isthmi +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000398 +is_a: UBERON:0007635 ! nucleus of medulla oblongata +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000399 +name: secondary gustatory nucleus trigeminal nuclei +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000399 +is_a: UBERON:0004132 ! trigeminal sensory nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000401 +name: octaval nerve sensory nucleus +namespace: uberon/phenoscape-anatomy +comment: TO DO: see DOI: 10.1002/cne.902660403 for next steps in defining different octaval nerve nuclei. +xref: ZFA:0000401 +is_a: UBERON:0000126 ! cranial nerve nucleus +is_a: UBERON:0007635 ! nucleus of medulla oblongata +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000406 +name: obsolete parvocellular superficial pretectal nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000406 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000408 +name: periventricular nucleus of caudal tuberculum +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000408 +is_a: UBERON:0006569 ! diencephalic nucleus +relationship: part_of UBERON:2000633 ! caudal tuberculum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000410 +name: postcleithrum +namespace: uberon/phenoscape-anatomy +def: "Dermal bone placed postero-medially to the supracleithrum and/or cleithrum." [TAO:GA_TG, TAO:wd] +comment: Commonly, the postcleithra form a bilateral series including one to three flat, thin postcleithra of variable shapes (in teleosts). Basal teleosts may have a series up to seven postcleithra (see Arratia 1984 and 1997 and references herein). +synonym: "métacleithrum" EXACT [PSPUB:0000131] +synonym: "métaclithrum" EXACT [PSPUB:0000131] +synonym: "paraclithrum" EXACT [PSPUB:0000143] +synonym: "postclavicle" EXACT [TAO:0000410] +synonym: "postcleithra" EXACT PLURAL [TAO:0000410] +synonym: "postcleithrum" EXACT [PSPUB:0000164] +xref: ZFA:0000410 +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0008907 ! dermal bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000411 +name: posterior crista primordium +namespace: uberon/phenoscape-anatomy +synonym: "posterior crista primordia" EXACT PLURAL [TAO:0000411] +xref: ZFA:0000411 +is_a: UBERON:0003239 ! epithelium of posterior semicircular canal +is_a: UBERON:0003249 ! epithelium of otic placode +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000412 +name: posterior semicircular canal primordium +namespace: uberon/phenoscape-anatomy +synonym: "posterior semicircular canal primordia" EXACT PLURAL [TAO:0000412] +xref: ZFA:0000412 +is_a: UBERON:2002215 ! otic vesicle protrusion +relationship: part_of UBERON:0001840 ! semicircular canal +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000414 +name: presumptive cephalic mesoderm +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000414 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0000926 ! mesoderm +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000419 +name: pterosphenoid +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone that sutures with the orbitosphenoid anteriorly, the frontal bone dorsally and the sphenotic and prootic posteriorly. The pterosphenoid forms part of the orbitosphenoid region. The pterosphenoid bears foramina that accommodate branches of the trigeminal and facial nerves. The pterosphenoid is a paired bone." [ZFIN:curator] +synonym: "alisphenoid" EXACT [TAO:0000419] +synonym: "pterosphenoids" EXACT PLURAL [TAO:0000419] +xref: ZFA:0000419 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011164 ! neurocranium bone +relationship: develops_from UBERON:2001515 ! taenia marginalis posterior +relationship: overlaps UBERON:0001703 ! neurocranium +relationship: overlaps UBERON:2001831 ! pterosphenoid-orbitosphenoid joint +relationship: overlaps UBERON:2002033 ! prootic-pterosphenoid joint +relationship: overlaps UBERON:2002217 ! parasphenoid-pterosphenoid joint +relationship: part_of UBERON:0003111 ! sphenoid region +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000422 +name: retroarticular +namespace: uberon/phenoscape-anatomy +def: "The retroarticular is a cartilage bone that forms at the posteroventral tip of Meckel's cartilage where the interoperculomandibular ligament attaches (5.1 mm NL). In the adult it is basically triangular in shape. The retroarticular is ligamentously connected to the interopercle and preopercle posteriorly and abuts the ventral shelf of the dentary anteriorly." [ZFIN:curator] +xref: ZFA:0000422 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004768 ! bone of lower jaw +relationship: develops_from UBERON:0003107 ! Meckel's cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000424 +name: opercular lateral line +namespace: uberon/phenoscape-anatomy +def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] +xref: ZFA:0000424 +is_a: UBERON:2001470 ! anterior lateral line +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000425 +name: anterior lateral line nerve +namespace: uberon/phenoscape-anatomy +def: "Cranial nerve which enters the brain between cranial nerves VI and VII; contains afferents and sensory efferents to the anterior lateral line ganglia." [ZFIN:curator] +synonym: "rostral lateral line nerve" EXACT [TAO:0000425] +xref: ZFA:0000425 +is_a: UBERON:0008906 ! lateral line nerve +relationship: part_of UBERON:2001468 ! anterior lateral line system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000426 +name: rostral parvocellular preoptic nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000426 +is_a: UBERON:0007251 ! preoptic nucleus +is_a: UBERON:2002219 ! parvocellular preoptic nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000429 +name: scaphium +namespace: uberon/phenoscape-anatomy +def: "Neural arch and Weberian ossicle that is reduced in size relative to other neural arches. Scaphium has a process which articulates with the first centrum." [ZFIN:curator] +synonym: "second Weberian ossicle" EXACT [TAO:0000429] +synonym: "Weberian ossicle 2" EXACT [TAO:0000429] +xref: ZFA:0000429 +is_a: UBERON:0003861 ! neural arch +is_a: UBERON:0005814 ! arch of atlas +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000430 +name: secondary gustatory tract +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000430 +is_a: UBERON:0014649 ! white matter of medulla oblongata +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000437 +name: caudal fin actinotrichium +namespace: uberon/phenoscape-anatomy +def: "Actinotrichium that is part of the caudal fin skeleton." [TAO:wd] +xref: ZFA:0005424 +is_a: UBERON:2000089 ! actinotrichium +intersection_of: UBERON:2000089 ! actinotrichium +intersection_of: part_of UBERON:4000164 ! caudal fin +relationship: part_of UBERON:4000167 ! caudal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000438 +name: parhypural +namespace: uberon/phenoscape-anatomy +alt_id: UBERON:2000562 +def: "Haemal spine of last hemal arch that is pierced by the haemal canal through which the caudal vessels pass or haemal arch of preural centrum 1. Its distal part commonly supports lepidotrichia. The parhypural is an unpaired median haemal spine." [TAO:GA_TG] +comment: The parhypural is frequently confused with the arch plus spine of preural centrum 1. +synonym: "hemal spine of preural centrum 1" EXACT [TAO:0000438] +synonym: "parahypural" EXACT [TAO:0000438] +synonym: "parhypural" EXACT [PSPUB:0000164] +synonym: "parhypural hypaxonal" EXACT [PSPUB:0000133] +synonym: "parhyural" EXACT [TAO:0000438] +synonym: "phy" EXACT [TAO:0000438] +synonym: "prohypural" EXACT [PSPUB:0000143] +xref: ZFA:0000438 +is_a: UBERON:0004376 ! fin bone +is_a: UBERON:2001364 ! hemal spine +relationship: part_of UBERON:2000557 ! preural 1 vertebra +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000439 +name: superficial pelvic abductor +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000439 +is_a: UBERON:0006845 ! abductor muscle +is_a: UBERON:0014795 ! pelvic appendage muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000440 +name: superior raphe nucleus +namespace: uberon/phenoscape-anatomy +synonym: "anterior raphe nucleus" EXACT [TAO:0000440] +xref: ZFA:0000440 +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009662 ! hindbrain nucleus +relationship: part_of UBERON:0004684 ! raphe nuclei +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000442 +name: supraneural bone +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone that is median and located in the dorsal skeletogenous septum between the cranium and the dorsal fin." [ZFIN:curator] +synonym: "axonoste libre" EXACT [PSPUB:0000164] +synonym: "predorsal" EXACT [TAO:0000442] +synonym: "predorsal bone" EXACT [TAO:0000442] +synonym: "pseudaxonoste" EXACT [PSPUB:0000156] +synonym: "sn" EXACT [TAO:0000442] +synonym: "supraneural" EXACT [PSPUB:0000164] +synonym: "supraneurals" EXACT PLURAL [TAO:0000442] +xref: ZFA:0000442 +is_a: UBERON:0001474 ! bone element +is_a: UBERON:4300035 ! supraneural element +intersection_of: UBERON:4300035 ! supraneural element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000448 +name: tertiary gustatory nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000448 +is_a: UBERON:0006569 ! diencephalic nucleus +relationship: part_of UBERON:2000633 ! caudal tuberculum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000449 +name: torus longitudinalis +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000449 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0002314 ! midbrain tectum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000451 +name: upper oral valve +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000451 +is_a: UBERON:0000479 ! tissue +relationship: adjacent_to UBERON:2000695 ! labial cavities +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000452 +name: urohyal +namespace: uberon/phenoscape-anatomy +def: "Tendon bone that forms in the tendon of the sternohyoid muscles ventral to the anterior end of copula 1. The urohyal associates by ligaments to the ventral hypohyals or it articulates with the ventral hypohyals. The urohyal is an unpaired bone." [TAO:GA_TG, TAO:wd] +comment: The urohyal forms as a single ossification in most teleosts, or as a paired ossification. +synonym: "clidoste" EXACT [PSPUB:0000140] +synonym: "interclaviculaire" EXACT [PSPUB:0000143] +synonym: "jugulaire" EXACT [PSPUB:0000109] +synonym: "parurohyal" EXACT [TAO:Arratia_Schultze_1990] +synonym: "urohyal" EXACT [PSPUB:0000164] +xref: ZFA:0000452 +is_a: UBERON:0008907 ! dermal bone +relationship: overlaps UBERON:2001847 ! dorsal hypohyal-urohyal joint +relationship: overlaps UBERON:2001848 ! ventral hypohyal-urohyal joint +relationship: part_of UBERON:0003113 ! dermatocranium +relationship: part_of UBERON:0011153 ! ventral hyoid arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000454 +name: ventral accessory optic nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000454 +is_a: UBERON:0035566 ! central pretectal nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000455 +name: ventral flexor +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000455 +is_a: UBERON:0000366 ! flexor muscle +relationship: part_of UBERON:2000628 ! caudal fin musculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000456 +name: obsolete ventral nucleus of V +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000456 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000459 +name: ventromedial thalamic nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000459 +is_a: UBERON:0015234 ! nucleus of ventral thalamus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000460 +name: adipose fin actinotrichium +namespace: uberon/phenoscape-anatomy +def: "Actinotrichium that is part of the adipose fin." [TAO:wd] +is_a: UBERON:2000089 ! actinotrichium +intersection_of: UBERON:2000089 ! actinotrichium +intersection_of: part_of UBERON:2000251 ! adipose fin +relationship: part_of UBERON:4500004 ! adipose fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000461 +name: Weberian ossicle +namespace: uberon/phenoscape-anatomy +def: "Bone that is an element associated with a Weberian vertebra." [ZFIN:curator] +synonym: "Weberian ossicles" EXACT PLURAL [TAO:0000461] +xref: ZFA:0000461 +is_a: UBERON:0000491 ! solid compound organ +is_a: UBERON:0004765 ! skeletal element +intersection_of: UBERON:0004765 ! skeletal element +intersection_of: part_of UBERON:2001871 ! Weberian ossicle set +relationship: part_of UBERON:2001871 ! Weberian ossicle set +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000462 +name: abductor hyohyoid +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000462 +is_a: UBERON:0005493 ! hyoid muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000463 +name: obsolete adductor +namespace: uberon/phenoscape-anatomy +comment: false +is_obsolete: true +consider: UBERON:0011145 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000464 +name: otic lateral line +namespace: uberon/phenoscape-anatomy +def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] +xref: ZFA:0000464 +is_a: UBERON:2001470 ! anterior lateral line +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000465 +name: adductor operculi +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000465 +is_a: UBERON:0005493 ! hyoid muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000466 +name: anal depressor +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000466 +is_a: UBERON:2005270 ! depressor muscle +relationship: part_of UBERON:2001154 ! anal fin musculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000468 +name: anterior crista primordium +namespace: uberon/phenoscape-anatomy +synonym: "anterior crista primordia" EXACT PLURAL [TAO:0000468] +xref: ZFA:0000468 +is_a: UBERON:0001048 ! primordium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000469 +name: anterior semicircular canal primordium +namespace: uberon/phenoscape-anatomy +synonym: "anterior semicircular canal primordia" EXACT PLURAL [TAO:0000469] +xref: ZFA:0000469 +is_a: UBERON:2002215 ! otic vesicle protrusion +relationship: part_of UBERON:0001840 ! semicircular canal +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000474 +name: intercalar +namespace: uberon/phenoscape-anatomy +def: "Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal." [ZFIN:curator] +synonym: "opisthotic" RELATED [TAO:0000474] +xref: ZFA:0000474 +is_a: UBERON:0007842 ! membrane bone +is_a: UBERON:0011164 ! neurocranium bone +relationship: part_of UBERON:0003110 ! otic region +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000475 +name: paraventricular organ +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000475 +is_a: UBERON:0006569 ! diencephalic nucleus +relationship: part_of UBERON:2000633 ! caudal tuberculum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000476 +name: branchiostegal ray +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that is a flattened element that supports the branchiostegal membrane. Branchiostegal rays are generally present in a series articulating ventrally or ventro-medially with the anterior and posterior ceratobranchials whereas the most posterior ray articulates with the subopercle. The branchiostegal ray is paired." [ZFIN:curator] +comment: Although the branchiostegals are articulated or attached to the hyoid arch, they belong to the opercular series. Branchiostegal rays are of variable shape and number and their homology is problematic. Usually they are numbered from anterior to posterior elements, instead from posterior to anteriorly considering that the last element of the series is consistently associated to the subopercle. For a survey of branchiostegal rays see Mc Allister (1968). +synonym: "branchiostegal rays" EXACT PLURAL [TAO:0000476] +xref: ZFA:0000476 +is_a: UBERON:0008907 ! dermal bone +relationship: overlaps UBERON:2001849 ! epihyal-branchiostegal ray joint +relationship: overlaps UBERON:2001850 ! ceratohyal-branchiostegal ray joint +relationship: part_of UBERON:0011153 ! ventral hyoid arch skeleton +relationship: part_of UBERON:2001875 ! opercular series +relationship: part_of UBERON:2002101 ! branchiostegal ray series +relationship: part_of UBERON:4300150 ! gill membrane +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000479 +name: caudal mesencephalo-cerebellar tract +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000479 +is_a: UBERON:0000073 ! regional part of nervous system +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:2000318 ! brainstem and spinal white matter +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000480 +name: caudal octavolateralis nucleus +namespace: uberon/phenoscape-anatomy +def: "Hindbrain nucleus which is part of the medulla oblongata and is a mechanoreceptive area along with the medial octavolateralis nucleus. It is smaller than the medial octavolateralis nucleus and is located lateral to the facial and vagal lobes of the medulla oblongata. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209] +xref: ZFA:0000480 +is_a: UBERON:2000381 ! lateral line sensory nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000481 +name: caudal preglomerular nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000481 +is_a: UBERON:2002226 ! preglomerular nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000482 +name: caudal tuberal nucleus +namespace: uberon/phenoscape-anatomy +synonym: "posterior tuberal nucleus" EXACT [TAO:0000482] +xref: ZFA:0000482 +is_a: UBERON:0006569 ! diencephalic nucleus +relationship: part_of UBERON:2000633 ! caudal tuberculum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000484 +name: celiacomesenteric artery +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000484 +is_a: UBERON:0001637 ! artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000485 +name: central nucleus inferior lobe +namespace: uberon/phenoscape-anatomy +synonym: "central nucleus inferior lobes" EXACT PLURAL [TAO:0000485] +xref: ZFA:0000485 +is_a: UBERON:0006568 ! hypothalamic nucleus +relationship: part_of UBERON:2000165 ! inferior lobe +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000487 +name: obsolete central zone of D +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000487 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000488 +name: ceratobranchial bone +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone that is bilaterally paired and forms part of the ventral branchial arches." [ZFIN:curator] +synonym: "ceratobranchials" EXACT PLURAL [TAO:0000488] +xref: ZFA:0000488 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:2001898 ! ceratobranchial element +relationship: develops_from UBERON:2001516 ! ceratobranchial cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000491 +name: obsolete commissure of the caudal tuberculum +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000491 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000492 +name: coracoradialis +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000492 +is_a: UBERON:0014794 ! pectoral appendage muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000493 +name: obsolete decussation of medial funicular nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000493 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000495 +name: infraorbital 5 +namespace: uberon/phenoscape-anatomy +def: "Infraorbital that is the fifth bone of the infraorbital series." [ZFIN:curator] +synonym: "dermosphenotic" RELATED [TAO:0000495] +xref: ZFA:0000495 +is_a: UBERON:2000376 ! infraorbital +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000497 +name: pelvic adductor profundus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000497 +is_a: UBERON:0011144 ! adductor muscle of hip +is_a: UBERON:0014795 ! pelvic appendage muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000498 +name: dilatator operculi +namespace: uberon/phenoscape-anatomy +def: "Mandibular muscle that inserts along the dorsolateral faces of the opercles. Responsible for opercular abduction." [https://doi.org/10.1006/dbio.2002.0701, https://doi.org/10.1186/1471-213X-8-24, ZFA:0000498] +synonym: "dilator operculi" RELATED [] +xref: ZFA:0000498 +is_a: UBERON:0011648 ! jaw muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000499 +name: dorsal arrector +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000499 +is_a: UBERON:0014794 ! pectoral appendage muscle +is_a: UBERON:2002147 ! arrector muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000500 +name: dorsal erector muscle +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000500 +is_a: UBERON:2005267 ! erector muscle +relationship: part_of UBERON:2000648 ! dorsal fin musculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000502 +name: dorsal motor nucleus trigeminal nerve +namespace: uberon/phenoscape-anatomy +synonym: "motor nucleus V" RELATED [TAO:0000502] +synonym: "nV" RELATED [TAO:0000502] +xref: ZFA:0000502 +is_a: UBERON:0002633 ! motor nucleus of trigeminal nerve +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000503 +name: dorsal oblique branchial muscle +namespace: uberon/phenoscape-anatomy +synonym: "dorsal oblique branchial muscles" EXACT PLURAL [TAO:0000503] +synonym: "obliquues dorsalis" EXACT [https://repository.si.edu/handle/10088/5206] +synonym: "obliquus dorsalis" EXACT [] {comment="https://doi.org/10.1093/sysbio/sys060"} +xref: ZFA:0000503 +is_a: UBERON:0000933 ! pharyngeal muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000504 +name: dorsal retractor +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000504 +is_a: UBERON:0000933 ! pharyngeal muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000506 +name: obsolete dorsal zone of D +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000506 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000507 +name: epineural +namespace: uberon/phenoscape-anatomy +def: "Some or all epineural bones ossify free from the neural arches in most teleosts. In some lower teleosts, e.g., Leptolepis, Hiodon, elopiforms and albuliforms, ossification proceeds from the attachment point of the ligament to the arch, and the epineural is a process of the neural arch. In many lower teleosts epineurals are forked proximally." [ZFIN:curator] +xref: ZFA:0000507 +is_a: UBERON:2000526 ! intermuscular bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000508 +name: pelvic fin radial bone +namespace: uberon/phenoscape-anatomy +def: "pelvic fin radial element that is composed of bone tissue." [OBOL:automatic] +synonym: "pelvic actinost" EXACT [TAO:0000508] +synonym: "pelvic radial" EXACT [TAO:0000508] +xref: ZFA:0000508 +is_a: UBERON:0010742 ! bone of pelvic complex +is_a: UBERON:1500006 ! paired fin radial bone +is_a: UBERON:2100508 ! pelvic fin radial element +intersection_of: UBERON:2100508 ! pelvic fin radial element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2001538 ! pelvic radial cartilage + +[Term] +id: UBERON:2000510 +name: external levatores +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000510 +is_a: UBERON:0000933 ! pharyngeal muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000512 +name: facial lobe +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000512 +is_a: UBERON:0007635 ! nucleus of medulla oblongata +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000513 +name: obsolete fast muscle cell somite 1 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 1" EXACT PLURAL [TAO:0000513] +xref: ZFA:0000513 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000516 +name: periventricular grey zone +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000516 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0001945 ! superior colliculus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000517 +name: glossopharyngeal lobe +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000517 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001896 ! medulla oblongata +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000520 +name: obsolete horizontal commissure +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000520 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000522 +name: inferior hyohyoid +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000522 +is_a: UBERON:0005493 ! hyoid muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000523 +name: inferior reticular formation +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000523 +is_a: UBERON:0007635 ! nucleus of medulla oblongata +relationship: part_of UBERON:2000542 ! medial column +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000525 +name: intercalarium +namespace: uberon/phenoscape-anatomy +def: "Neural arch and Weberian ossicle that has been modified in shape relative to other neural arches. Intercalarium includes three parts: an anterolateral process (the manubrium) which is embedded in the interossicular ligament and the ascending and articulating processes." [ZFIN:curator] +synonym: "third Weberian ossicle" EXACT [TAO:0000525] +synonym: "Weberian ossicle 3" EXACT [TAO:0000525] +xref: ZFA:0000525 +is_a: UBERON:0000218 ! vertebral arch of axis +is_a: UBERON:2000461 ! Weberian ossicle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000526 +name: intermuscular bone +namespace: uberon/phenoscape-anatomy +def: "Axial bone which is a segmental ossification that forms in the myoseptum." [ZFIN:curator] +comment: Intermuscular bones are found in teleosts fishes only. +synonym: "métamyoste" EXACT [PSPUB:0000147] +synonym: "métaxymyoste" EXACT [PSPUB:0000153] +synonym: "os intermusculaire" EXACT [PSPUB:0000164] +xref: ZFA:0000526 +is_a: UBERON:0002513 ! endochondral bone +relationship: part_of UBERON:0002090 ! postcranial axial skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000527 +name: pharyngobranchial bone +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone of the branchial arches located medial to the epibranchials." [ZFIN:curator] +synonym: "infrapharyngobranchial" EXACT [TAO:0000527] +synonym: "infrapharyngobranchial bone" EXACT [] +synonym: "pharyngobranchials" EXACT PLURAL [TAO:0000527] +xref: ZFA:0000527 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:2001909 ! pharyngobranchial element +relationship: develops_from UBERON:2001533 ! pharyngobranchial cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000528 +name: interradialis +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000528 +is_a: UBERON:0014892 ! skeletal muscle organ +relationship: part_of UBERON:2000628 ! caudal fin musculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000530 +name: lapillus +namespace: uberon/phenoscape-anatomy +synonym: "utricular otolith" EXACT [TAO:0000530] +synonym: "utriculith" EXACT [TAO:0000530] +xref: ZFA:0000530 +is_a: UBERON:0002280 ! otolith +relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000532 +name: lateral division +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000532 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:2000603 ! valvula cerebelli +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000534 +name: obsolete lateral longitudinal fasciculus +namespace: uberon/phenoscape-anatomy +alt_id: UBERON:2000198 +synonym: "lateral longitundinal fasciculus" EXACT [TAO:0000534] +xref: ZFA:0000534 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000536 +name: obsolete lateral zone of D +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000536 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000540 +name: magnocellular octaval nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000540 +is_a: UBERON:2000401 ! octaval nerve sensory nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000541 +name: obsolete marginal blastomere +namespace: uberon/phenoscape-anatomy +def: "Cells (incompletely cleaved before the YSL forms), located at the surface just at the rim of the blastodisc, external to the deep blastomeres. Kimmel et al, 1995." [ZFIN:curator] +synonym: "marginal blastomeres" EXACT PLURAL [TAO:0000541] +xref: ZFA:0000541 +is_obsolete: true +replaced_by: ZFA:0000541 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000542 +name: medial column +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000542 +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0002559 ! medullary reticular formation +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000544 +name: pectoral fin actinotrichium +namespace: uberon/phenoscape-anatomy +def: "Actinotrichium that is part of the pectoral fin." [TAO:wd] +xref: ZFA:0005545 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:2000089 ! actinotrichium +intersection_of: UBERON:2000089 ! actinotrichium +intersection_of: part_of UBERON:0000151 ! pectoral fin +relationship: part_of UBERON:0010710 ! pectoral fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000549 +name: posttemporal +namespace: uberon/phenoscape-anatomy +def: "Dermal bone of the secondary pectoral girdle that attaches the girdle to the skull. Its dorsal process attaches to the epiotic or epioccipital, the ventral process to the intercalar and the body articulates with the supracleithrum. The postotic sensory canal or lateral line runs within or lateral to bone." [TAO:GA_TG] +comment: The posttemporal is commonly a Y-shaped bone with two elongate processes. The dorsal process may be equal or longer than the ventral process or the opposite. The ventral process may be absent in some teleosts. +synonym: "post-temporal" EXACT [TAO:0000549] +synonym: "postemporal" EXACT [TAO:0000549] +synonym: "posttemporale" EXACT [TAO:0000549] +synonym: "suprascapula" RELATED [TAO:0000549] +xref: ZFA:0000549 +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0011164 ! neurocranium bone +relationship: overlaps UBERON:2002059 ! posttemporal-parietal joint +relationship: part_of UBERON:0003110 ! otic region +relationship: part_of UBERON:0003113 ! dermatocranium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000551 +name: nucleus lateralis valvulae +namespace: uberon/phenoscape-anatomy +def: "Hindbrain nucleus in the tegmental region of rhombomere 1. The cells of the nucleus are granular and lie at the ventral border of the cerebellum and brain stem." [ZFA:0000551, ZFIN:ZDB-PUB-100601-20, ZFIN:ZDB-PUB-961014-1280] +xref: TAO:0000551 +xref: ZFA:0000551 +is_a: UBERON:0007635 ! nucleus of medulla oblongata +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000555 +name: opercular flap +namespace: uberon/phenoscape-anatomy +synonym: "gill cover" EXACT [TAO:0000555] +synonym: "opercular apparatus" EXACT [TAO:0000555] +synonym: "operculum" RELATED [TAO:0000555] +xref: ZFA:0000555 +is_a: UBERON:0003102 ! surface structure +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000557 +name: preural 1 vertebra +namespace: uberon/phenoscape-anatomy +def: "Last caudal vertebra identified as the point at which the caudal vessels bifurcate, leaving the protection of the haemal arches of the caudal vertebrae and running laterally to the hypurals. This vertebra bears, commonly, a well-developed haemal arch and its spine (parhypural)." [TAO:GA_TG] +comment: The haemal arch may be fused to the centrum or not. In contrast, the neural arch and spine may be well developed, or rudimentary or absent in different teleost subgroups. +synonym: "penultimate vertebra" EXACT [TAO:0000557] +synonym: "preural centrum 1" EXACT [TAO:0000557] +synonym: "pu1" EXACT [TAO:0000557] +synonym: "second last vertebra" EXACT [TAO:0000557] +xref: ZFA:0000557 +is_a: UBERON:2000734 ! preural vertebra +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000558 +name: posterior macula +namespace: uberon/phenoscape-anatomy +def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [ZFIN:curator] +synonym: "pm" EXACT [TAO:0000558] +synonym: "posteromedial macula" EXACT [TAO:0000558] +xref: ZFA:0000558 +is_a: UBERON:0000054 ! macula +relationship: develops_from UBERON:2001097 ! immature posterior macula +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000564 +name: pelvic abductor profundus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000564 +is_a: UBERON:0006845 ! abductor muscle +is_a: UBERON:0014795 ! pelvic appendage muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000571 +name: obsolete presumptive telencephalon +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000571 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000573 +name: internal cellular layer +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000573 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002264 ! olfactory bulb +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000576 +name: pterotic +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone that articulates with the autosphenotic anteriorly, the parietal dorsomedially, the prootic ventrally (and the intercalar occasionally), and the epiotic and exoccipital posteriorly. The pterotic encloses the horizontal semicircular canal of the inner ear. The lower edge of the pterotic contributes to the hyomandibular facet. The pterotic is paired." [ZFIN:curator] +synonym: "autopterotic" EXACT [TAO:0000576] +xref: ZFA:0000576 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0011164 ! neurocranium bone +relationship: develops_from UBERON:0005410 ! cartilaginous otic capsule +relationship: overlaps UBERON:0001703 ! neurocranium +relationship: overlaps UBERON:2001711 ! frontal-pterotic joint +relationship: part_of UBERON:0003110 ! otic region +relationship: part_of UBERON:0003113 ! dermatocranium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000579 +name: rostral mesencephalo-cerebellar tract +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000579 +is_a: UBERON:0002316 ! white matter +relationship: part_of UBERON:2000318 ! brainstem and spinal white matter +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000580 +name: rostral preglomerular nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000580 +is_a: UBERON:2002226 ! preglomerular nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000581 +name: rostral tuberal nucleus +namespace: uberon/phenoscape-anatomy +synonym: "anterior tuberal nucleus" EXACT [TAO:0000581] +xref: ZFA:0000581 +is_a: UBERON:0006568 ! hypothalamic nucleus +relationship: part_of UBERON:2000707 ! ventral zone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000582 +name: saccus dorsalis +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000582 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001899 ! epithalamus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000585 +name: kinethmoid cartilage +namespace: uberon/phenoscape-anatomy +def: "Cranial cartilage which is a small median cartilage located between the premaxillae and anterodorsal to the ethmoid." [ZFIN:curator] +synonym: "kinethmoideum cartilage" EXACT [TAO:0000585] +xref: ZFA:0000585 +is_a: UBERON:0003932 ! cartilage element of chondrocranium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000586 +name: preural 2 vertebra +namespace: uberon/phenoscape-anatomy +def: "Vertebra anterior to preural centrum 1; sometimes termed the 'antepenultimate' vertebra. Mabee and Bird, 2001." [ZFIN:curator] +synonym: "antepenultimate vertebra" EXACT [TAO:0000586] +synonym: "preural centrum 2" EXACT [TAO:0000586] +synonym: "pu2" EXACT [TAO:0000586] +synonym: "third last vertebra" EXACT [TAO:0000586] +xref: ZFA:0000586 +is_a: UBERON:2000734 ! preural vertebra +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000587 +name: sphenotic +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone that sutures with the pterosphenoid anteriorly, the prootic ventrally, the frontal bone dorso-medially, and the pterotic dorso-posteriorly. Occasionally the sphenotic sutures with the parietal bone. The sphenotic separates the orbital from the otic region. The sphenotic bears a large antero-lateral or lateral or ventro-lateral process that borders the postero-dorsal margin of the orbit. The sphenotic is a paired bone." [ZFIN:curator] +comment: The lower edge of the sphenotic may contribute to the hyomandibular facet depending on the fish group. +synonym: "autosphenotic" EXACT [TAO:0000587] +synonym: "sphenotics" EXACT PLURAL [TAO:0000587] +xref: ZFA:0000587 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011164 ! neurocranium bone +relationship: develops_from UBERON:0006605 ! tectum synoticum +relationship: develops_from UBERON:2001515 ! taenia marginalis posterior +relationship: overlaps UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0003110 ! otic region +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000589 +name: sulcus ypsiloniformis +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000589 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0006846 ! surface groove +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0000203 ! pallium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000592 +name: superficial pelvic adductor +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000592 +is_a: UBERON:0011144 ! adductor muscle of hip +is_a: UBERON:0014795 ! pelvic appendage muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000593 +name: superior reticular formation medial column +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000593 +is_a: UBERON:0007635 ! nucleus of medulla oblongata +relationship: part_of UBERON:2000542 ! medial column +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000594 +name: supracleithrum +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that articulates dorsally with the posttemporal and ventrally with the cleithrum. Supracleithrum is part of the secondary pectoral girdle and commonly, carries part of the lateral line canal." [TAO:GA_TG, TAO:wd] +comment: The dorsalmost postcleithrum or postcleithrum 1 may lie medial to the ventral part of the supracleithrum. The postotic canal or lateral line may run close to the dorsal margin or in the upper third or in the lowest third of the bone depending on the fish group. +synonym: "hypercleithrum" EXACT [PSPUB:0000131] +synonym: "supracleithra" EXACT PLURAL [TAO:0000594] +synonym: "supracleithrum" EXACT [PSPUB:0000164] +synonym: "épiclithrum" EXACT [PSPUB:0000132] +xref: ZFA:0000594 +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0008907 ! dermal bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000596 +name: pelvic fin actinotrichium +namespace: uberon/phenoscape-anatomy +def: "Actinotrichium that is part of the pelvic fin." [TAO:wd] +xref: ZFA:0005546 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:2000089 ! actinotrichium +intersection_of: UBERON:2000089 ! actinotrichium +intersection_of: part_of UBERON:0000152 ! pelvic fin +relationship: part_of UBERON:0010711 ! pelvic fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000597 +name: telencephalic tracts +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000597 +is_a: UBERON:0011299 ! white matter of telencephalon +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000599 +name: torus semicircularis +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000599 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0002314 ! midbrain tectum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000601 +name: obsolete pretectal periventricular nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000601 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000602 +name: uroneural +namespace: uberon/phenoscape-anatomy +def: "Neural arch that extends along the dorso-lateral surface of the last preural centra and/or ural centra and the notochord (Arratia & Schultze, 1992). An uroneural develops as a modification of the neural arch of an ural centrum (Patterson, 1968). The series of uroneurals may include from 7 to 1 elements that are numbered from rostrad to caudad. An uroneural is a paired membrane bone." [TAO:Arratia_Schultze_1992, TAO:Patterson_1968] +comment: The presence of modified ural neural arches or uroneurals is interpreted as a synapomorphy of Teleostei. Uroneurals present some modifications in certain teleost subgroups and such specialized structures are named pleurostyle (e.g., ostarioclupeomorphs) and stegural (e.g., salmonids). +synonym: "uroneurals" EXACT PLURAL [TAO:0000602] +xref: ZFA:0000602 +is_a: UBERON:0003861 ! neural arch +is_a: UBERON:0004376 ! fin bone +relationship: part_of UBERON:4000167 ! caudal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000603 +name: valvula cerebelli +namespace: uberon/phenoscape-anatomy +def: "Brain structure which is caudally attached to the rostral medulla oblongata and extends into the tectal ventricle. The valvula cerebelli consists of a granular and a molecular layer along with aggregations of large Purkinje and eurydendroid cells and is uniquely present in ray-finned fishes. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFA:0000603, ZFA:curator] +synonym: "valvula" RELATED [ZFA:0000603] +synonym: "valvula cerebellum" EXACT [TAO:0000603] +synonym: "valvula cerebellum" EXACT PLURAL [ZFA:0000603] +xref: TAO:0000603 +xref: ZFA:0000603 +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002037 {source="ZFA"} ! cerebellum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000606 +name: obsolete ventral oblique branchial muscle +namespace: uberon/phenoscape-anatomy +comment: removed axiom: part_of some 'pharyngeal muscle'\nno information about this class, may be zebrafish specific nomenclature. +synonym: "ventral oblique branchial muscles" EXACT PLURAL [TAO:0000606] +xref: ZFA:0000606 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000607 +name: obsolete ventral rhombencephalic commissure brain stem +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000607 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000608 +name: ventral transverse +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000608 +is_a: UBERON:0000933 ! pharyngeal muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000609 +name: ventrolateral nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000609 +is_a: UBERON:0011214 ! nucleus of midbrain tectum +relationship: part_of UBERON:2000599 ! torus semicircularis +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000610 +name: vertical myoseptum +namespace: uberon/phenoscape-anatomy +def: "Connective tissue partitions developing between the myotomes. Kimmel et al, 1995." [ZFIN:curator] +synonym: "transverse myoseptum" EXACT [TAO:0000610] +xref: ZFA:0000610 +is_a: UBERON:2001089 ! myoseptum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000611 +name: visceromotor column +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000611 +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0001896 ! medulla oblongata +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000614 +name: abductor profundus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000614 +is_a: UBERON:0006845 ! abductor muscle +is_a: UBERON:0014794 ! pectoral appendage muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000615 +name: adductor arcus palatini +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000615 +is_a: UBERON:0005493 ! hyoid muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000616 +name: adductor profundus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000616 +is_a: UBERON:0011145 ! adductor muscle +is_a: UBERON:0014794 ! pectoral appendage muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000617 +name: anal erector +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000617 +is_a: UBERON:2005267 ! erector muscle +relationship: part_of UBERON:2001154 ! anal fin musculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000618 +name: obsolete ansulate commissure +namespace: uberon/phenoscape-anatomy +def: "A brainstem commissure that contains major crossed descending projections from both tectal lobes. " [http://www.ncbi.nlm.nih.gov/pubmed/3496554] +comment: This class is present in fishes and amphibians. +xref: ZFA:0000618 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000620 +name: autopalatine +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone that is part of the antero-lateral region of the palate. Commonly, it articulates with the maxilla anterolaterally and with the ethmoidal region medially. It may also articulate with the dermopalatine ventro-laterally and with the entopterygoid posteriorly. The autopalatine is paired." [ZFIN:curator] +comment: The cartilaginous autopalatine forms from the anterior palatoquadrate arch. Possession of a dorsomedial process, which abuts the ethmoid, is a unique feature shared by Cypriniformes (Fink and Fink, 1981). The palatine has two components, the autopalatine (derived from pars autopalatine) and the dermal component having teeth, the dermopalatine Arratia & Schultze 1990. The element in cypriniforms is only the cartilage part, so that it is more correct to name it autopalatine and not as palatine in general that it implies a fusion of elements (as in perciforms). +synonym: "palatine bone" RELATED [TAO:0000620] +synonym: "palatines" EXACT PLURAL [TAO:0000620] +xref: ZFA:0000620 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0011597 ! bone of upper jaw +relationship: develops_from UBERON:0004752 ! palatoquadrate cartilage +relationship: overlaps UBERON:2001608 ! autopalatine-lateral ethmoid joint +relationship: overlaps UBERON:2001784 ! autopalatine-vomer joint +relationship: overlaps UBERON:2001942 ! autopalatine-maxillary joint +relationship: part_of UBERON:0011085 ! palatoquadrate arch +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000622 +name: barbel +namespace: uberon/phenoscape-anatomy +def: "Surface structure which is a tactile structure found in the branchial region. Barbels are covered with epidermis rich in taste buds, and are innervated by branches of the cranial nerves." [ZFIN:curator] +synonym: "barbels" EXACT PLURAL [TAO:0000622] +synonym: "barble" EXACT [TAO:0000622] +xref: ZFA:0000622 +is_a: UBERON:3000972 ! head external integument structure +relationship: develops_from UBERON:2005119 ! barbel primordium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000623 +name: basipterygium bone +namespace: uberon/phenoscape-anatomy +def: "basipterygium element that is composed of bone tissue." [OBOL:automatic] +synonym: "basipterygia" EXACT PLURAL [TAO:0000623] +synonym: "basipterygium ischiatique" EXACT [PSPUB:0000145] +synonym: "os pelvien" EXACT [PSPUB:0000164] +synonym: "pelvic bone" RELATED [TAO:0000623] +synonym: "pelvic plate" EXACT [] +synonym: "pubic plate" EXACT [] +xref: ZFA:0000623 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0007830 ! pelvic girdle bone/zone +is_a: UBERON:2100623 ! basipterygium element +intersection_of: UBERON:2100623 ! basipterygium element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2001539 ! basipterygium cartilage + +[Term] +id: UBERON:2000624 +name: obsolete brachium conjunctivum +namespace: uberon/phenoscape-anatomy +synonym: "brachium conjunctivium" EXACT [TAO:0000624] +xref: ZFA:0000624 +is_obsolete: true +replaced_by: UBERON:0002150 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000626 +name: obsolete bulbo-spinal tract +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000626 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000627 +name: posterior ceratohyal +namespace: uberon/phenoscape-anatomy +def: "Replacement bone that is bilaterally paired and articulates anteriorly with the anterior ceratohyal." [ZFIN:curator] +comment: Posterohyal is used in Rapp Py Daniel (1997). +synonym: "caudal ceratohyal" EXACT [TAO:0000627] +synonym: "epihyal" EXACT [TAO:0000627] +synonym: "posterohyal" EXACT [TAO:0000627] +synonym: "proximal ceratohyal" RELATED [TAO:0000627] +xref: ZFA:0000627 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0011610 ! ceratohyal cartilage +relationship: overlaps UBERON:2001841 ! interhyal-epihyal joint +relationship: overlaps UBERON:2001842 ! epihyal-ceratohyal joint +relationship: overlaps UBERON:2001849 ! epihyal-branchiostegal ray joint +relationship: part_of UBERON:0011153 ! ventral hyoid arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000628 +name: caudal fin musculature +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000628 +is_a: UBERON:0007271 ! appendage musculature +relationship: part_of UBERON:4000164 ! caudal fin +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000629 +name: caudal motor nucleus of abducens +namespace: uberon/phenoscape-anatomy +def: "Caudal part of the abducens nucleus that mediates motor function." [] +xref: ZFA:0000629 +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009662 ! hindbrain nucleus +relationship: part_of UBERON:0002682 ! abducens nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000630 +name: caudal parvocellular preoptic nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000630 +is_a: UBERON:0007251 ! preoptic nucleus +is_a: UBERON:2002219 ! parvocellular preoptic nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000633 +name: caudal tuberculum +namespace: uberon/phenoscape-anatomy +synonym: "posterior tubercle" EXACT [TAO:0000633] +synonym: "posterior tuberculum" EXACT [TAO:0000633] +xref: ZFA:0000633 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0001894 ! diencephalon +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000634 +name: caudal zone of median tuberal portion of hypothalamus +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:2000392 ! median tuberal portion +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000635 +name: obsolete central pretectal nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000635 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000636 +name: cerebellar crest +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000636 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:2000291 ! medial octavolateralis nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000637 +name: claustrum cartilage +namespace: uberon/phenoscape-anatomy +def: "Postcranial axial cartilage and Weberian ossicle that is located dorsal to the scaphium. The claustrum cartilage is bilaterally paired." [ZFIN:curator] +synonym: "first Weberian ossicle" RELATED [TAO:0000637] +xref: ZFA:0000637 +is_a: UBERON:2001457 ! postcranial axial cartilage +is_a: UBERON:4300190 ! claustrum element +intersection_of: UBERON:4300190 ! claustrum element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000638 +name: commissura rostral, pars dorsalis +namespace: uberon/phenoscape-anatomy +def: "Part of the anterior commissure which is located immediately ventral to the supracommissural nucleus of area ventralis telencephali. " [ISBN:3764351209] +xref: ZFA:0000638 +is_a: UBERON:0002437 ! cerebral hemisphere white matter +relationship: part_of UBERON:0000935 ! anterior commissure +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000639 +name: commissure of the secondary gustatory nuclei +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000639 +is_a: UBERON:0002317 ! white matter of cerebellum +relationship: part_of UBERON:2000318 ! brainstem and spinal white matter +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000642 +name: obsolete decussation of the medial octavolateralis nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000642 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000643 +name: rostral cerebellar tract +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000643 +is_a: UBERON:0002316 ! white matter +relationship: part_of UBERON:2000318 ! brainstem and spinal white matter +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000644 +name: obsolete dental plate +namespace: uberon/phenoscape-anatomy +comment: obsoleted because was artificially generalized from zebrafish, wherein it is currently obsolete. +xref: ZFA:0000644 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000645 +name: descending octaval nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000645 +is_a: UBERON:2000401 ! octaval nerve sensory nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000646 +name: anal fin distal radial bone +namespace: uberon/phenoscape-anatomy +def: "anal fin distal radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +synonym: "distal anal fin radial" EXACT [TAO:0000646] +xref: ZFA:0000646 +is_a: UBERON:2001671 ! anal fin radial bone +is_a: UBERON:2100646 ! anal fin distal radial element +intersection_of: UBERON:2100646 ! anal fin distal radial element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2200646 ! anal fin distal radial cartilage + +[Term] +id: UBERON:2000647 +name: dorsal caudal thalamic nucleus +namespace: uberon/phenoscape-anatomy +synonym: "dorsal posterior thalamic nucleus" EXACT [TAO:0000647] +xref: ZFA:0000647 +is_a: UBERON:0015233 ! nucleus of dorsal thalamus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000648 +name: dorsal fin musculature +namespace: uberon/phenoscape-anatomy +def: "Musculature that is part of the dorsal fin." [ZFA:0000648, ZFA:curator] +subset: efo_slim +xref: EFO:0003551 +xref: TAO:0000648 +xref: ZFA:0000648 +is_a: UBERON:0004469 ! musculature of back +is_a: UBERON:0007271 ! appendage musculature +intersection_of: UBERON:0007271 ! appendage musculature +intersection_of: part_of UBERON:0003097 ! dorsal fin +relationship: part_of UBERON:0003097 ! dorsal fin +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000651 +name: dorsal pelvic arrector +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000651 +is_a: UBERON:0014795 ! pelvic appendage muscle +is_a: UBERON:2002147 ! arrector muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000654 +name: rostral motor nucleus of abducens +namespace: uberon/phenoscape-anatomy +def: "Rostral part of the abducens nucleus that mediates motor function." [] +xref: ZFA:0000654 +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009662 ! hindbrain nucleus +relationship: part_of UBERON:0002682 ! abducens nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000655 +name: obsolete dorsomedial optic tract +namespace: uberon/phenoscape-anatomy +comment: removed axiom: white matter and part_of some 'optic tract'.\nNot clear that directional labels for optic tract parts are consistent across taxa. To be reviewed. +xref: ZFA:0000655 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000657 +name: entopterygoid +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that forms the ventro-medial part of the palate and the antero-ventral and ventral wall of the orbit. The entopterygoid is a paired bone." [TAO:GA_TG] +synonym: "endopterygoid bone" EXACT [] +synonym: "mesopterygoid" EXACT [TAO:0000657] +xref: ZFA:0000657 +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0011597 ! bone of upper jaw +relationship: part_of UBERON:0003113 ! dermatocranium +relationship: part_of UBERON:0011085 ! palatoquadrate arch +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000658 +name: epibranchial bone +namespace: uberon/phenoscape-anatomy +def: "Dorsal branchial arch bone that is bilaterally paired and articulates laterally with ceratobranchial cartilage or bone and medially with pharyngobranchial cartilage or bone." [ZFIN:curator] +synonym: "epibranchial bones" EXACT PLURAL [TAO:0000658] +xref: ZFA:0000658 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:2001904 ! epibranchial element +relationship: develops_from UBERON:2001527 ! epibranchial cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000660 +name: epural +namespace: uberon/phenoscape-anatomy +def: "A free, modified neural spine of a preural or a ural vertebra that is placed between the last developed neural spine of a preural centrum and the dorsal axis (= anterior margin of first uroneural) of the caudal skeleton . An epural commonly supports one or more dorsal procurrent rays. An epural is an unpaired median perichondrally ossified bone." [TAO:Arratia and Schultze_1992] +comment: The origin of the epurals is unclear, three hypotheses have been proposed: 1) The epurals are modified radials or dorsal radials; 2) the epurals are detached neural spines and may support fin rays; and 3) the epurals are a serial homologue of the supraneuralia. At least in teleosts the epural is a detached neural spine. For details see Schultze and Arratia (1989) and Arratia and Schultze (1992). +synonym: "epiural" EXACT [TAO:0000660] +synonym: "epiural apophysis" EXACT [TAO:0000660] +synonym: "epurals" EXACT PLURAL [TAO:0000660] +synonym: "éphural" EXACT [PSPUB:0000138] +synonym: "épural" EXACT [PSPUB:0000164] +xref: ZFA:0000660 +is_a: UBERON:0001076 ! neural spine +relationship: part_of UBERON:4000167 ! caudal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000662 +name: external pharyngoclavicularis +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000662 +is_a: UBERON:0000933 ! pharyngeal muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000663 +name: extrascapula +namespace: uberon/phenoscape-anatomy +alt_id: UBERON:2001413 +def: "Dermal canal-bearing bone placed at the dorso-posterior region of the skull roof, lying on the posterior region of the pterotic and parietals, or the pterotic and epioccipital, or on the pterotic, epioccipital and occipital bones." [TAO:GA_TG, TAO:wd] +comment: When it is present, the paired series of extrascapular bones may include one pair or two pairs or two pairs plus a median one. The most lateral is named lateral extrascapula and is the bone where the intersection of the otic, postotic and extrascapular or supratemporal canals occur. The medial and median extrascapulars carry the extrascapular or supratemporal canal. +synonym: "extrascapular" EXACT [TAO:0000663] +synonym: "extrascapular bone" EXACT [TAO:0000663] +synonym: "scale bone" EXACT [TAO:0000663] +synonym: "supratemporal" RELATED [TAO:0000663] +synonym: "tabular" RELATED [TAO:Harrington_1955, TAO:Weitzman_1962] +xref: ZFA:0000663 +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0008907 ! dermal bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000666 +name: filamental artery +namespace: uberon/phenoscape-anatomy +synonym: "filamental arteries" EXACT PLURAL [TAO:0000666] +xref: ZFA:0000666 +is_a: UBERON:0003469 ! respiratory system artery +relationship: part_of UBERON:0007303 ! pharyngeal vasculature +relationship: part_of UBERON:0009120 ! gill filament +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000673 +name: hypobranchial artery +namespace: uberon/phenoscape-anatomy +def: "A pair of HA are connect one to each AA1. They run rostromedially until at the extreme rostro-ventral midline the two vessels merge and then run straight caudally along the ventral midline until they reach the cranial end of the ventral aorta (VA). There, the single HA passes just dorsal to the rostral end of the VA and then immediately splits again into a pair of HA. The paired HA continue caudally just to either side of the ventral midline. The HA provide blood supply to the ventral branchial region and the heart.sogai et al. 2001." [ZFIN:curator] +synonym: "HA" EXACT [TAO:0000673] +xref: ZFA:0000673 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0003118 ! pharyngeal arch artery 1 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000674 +name: interopercle +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that is part of the opercular series. It is located ventro-medially to the preopercle and anterior to the subopercle. It is joined to the posterior part of the lower jaw (retroarticular) by a ligament. The interopercle is paired." [TAO:wd] +synonym: "interopercles" EXACT PLURAL [TAO:0000674] +xref: ZFA:0000674 +is_a: UBERON:0008907 ! dermal bone +relationship: overlaps UBERON:2001710 ! opercle-interopercle joint +relationship: part_of UBERON:0003113 ! dermatocranium +relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton +relationship: part_of UBERON:2000555 ! opercular flap +relationship: part_of UBERON:2001875 ! opercular series +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000676 +name: sagitta +namespace: uberon/phenoscape-anatomy +synonym: "saccular otolith" EXACT [TAO:0000676] +synonym: "sacculith" EXACT [TAO:0000676] +xref: ZFA:0000676 +is_a: UBERON:0002280 ! otolith +relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000677 +name: segmental intercostal artery +subset: efo_slim +synonym: "segmental intercostal arteries" EXACT PLURAL [TAO:0000677] +xref: EFO:0003558 +xref: TAO:0000677 +xref: ZFA:0000677 +is_a: UBERON:0005612 ! intercostal artery + +[Term] +id: UBERON:2000678 +name: obsolete hair cell anterior macula +namespace: uberon/phenoscape-anatomy +def: "Specialized neuronal receptor cells of the lateral line and acoustico-vestibular systems. Kimmel et al, 1995. (Also see Anatomical Atlas entry for hair cells by T. Whitfield.)" [ZFIN:curator] +synonym: "sensory hair cells anterior macula" EXACT PLURAL [TAO:0000678] +xref: ZFA:0000678 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000685 +name: superficial abductor +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000685 +is_a: UBERON:0006845 ! abductor muscle +is_a: UBERON:0014794 ! pectoral appendage muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000687 +name: superficial pretectum +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000687 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:0001944 ! pretectal region +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000688 +name: obsolete olfactory support cell +namespace: uberon/phenoscape-anatomy +synonym: "support cells" EXACT PLURAL [TAO:0000688] +xref: ZFA:0000688 +is_obsolete: true +replaced_by: CL:0000853 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000689 +name: obsolete supracommissural nucleus of V +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000689 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000690 +name: obsolete supraoptic commissure +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000690 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000691 +name: supraorbital bone +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that is part of the dorsal or upper border or antero-dorsal border of the orbit. The supraorbital bone may contact the orbital margin of the frontal bone medially, the antorbital antero-ventrally and the dermosphenotic posteriorly. The supraorbital bone does not carry sensory canals. The supraorbital bone is paired." [TAO:GA_TG] +comment: The supraorbital bone may be present as two or one bone in extant teleosts, although many of the advanced forms lack the bone. +xref: ZFA:0000691 +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0010321 ! skeletal element of eye region +relationship: part_of UBERON:0001697 ! orbit of skull +relationship: part_of UBERON:2001709 ! infraorbital series +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000692 +name: symplectic +namespace: uberon/phenoscape-anatomy +def: "Replacement bone that is bilaterally paired and articulates with the hyomandibula and the quadrate." [ZFIN:curator] +comment: When the interhyal bone or cartilage is present it articulates at the articulation of the hyomandibula and symplectic. +xref: ZFA:0000692 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0011607 ! hyomandibular cartilage +relationship: overlaps UBERON:2005268 ! preopercle horizontal limb-symplectic joint +relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000693 +name: tangential nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000693 +is_a: UBERON:2000401 ! octaval nerve sensory nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000694 +name: ceratobranchial 5 tooth +namespace: uberon/phenoscape-anatomy +def: "Tooth that forms on ceratobranchial 5 cartilage or bone." [ZFIN:curator] +comment: Ceratobranchial 5 teeth are the only teeth present in zebrafish and other cypriniforms. +synonym: "pharyngeal teeth" EXACT [TAO:0000694] +xref: ZFA:0000694 +is_a: UBERON:0001091 ! calcareous tooth +intersection_of: UBERON:0001091 ! calcareous tooth +intersection_of: attaches_to UBERON:2001239 ! ceratobranchial 5 bone +relationship: attaches_to UBERON:2001239 ! ceratobranchial 5 bone +relationship: develops_from UBERON:0005176 ! tooth enamel organ +relationship: part_of UBERON:2001239 ! ceratobranchial 5 bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000695 +name: labial cavities +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000695 +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0001007 ! digestive system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000698 +name: tripus +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone, membrane bone, and Weberian ossicle that is an element of third vertebra. Anteriorly it attaches to the interosseus ligament and posteriorly it extends as a transformator process embedded in the tunica externa of the swimbladder." [ZFIN:curator] +synonym: "fourth Weberian ossicle" EXACT [TAO:0000698] +synonym: "Weberian ossicle 4" EXACT [TAO:0000698] +xref: ZFA:0000698 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:2000461 ! Weberian ossicle +relationship: part_of UBERON:2001169 ! vertebral element 3 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000699 +name: entopterygoid vertical strut +namespace: uberon/phenoscape-anatomy +def: "Process that is the dorsally directed, vertical process of the entopterygoid. The strut sometimes articulates with the orbitosphenoid." [TAO:wd] +comment: Fink and Fink 1981, present in gymnotoids. +synonym: "endopterygoid vertical strut" EXACT [TAO:0000699] +synonym: "mesopterygoid vertical strut" EXACT [TAO:0000699] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2000657 ! entopterygoid +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000701 +name: ventral arrector +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000701 +is_a: UBERON:0014794 ! pectoral appendage muscle +is_a: UBERON:2002147 ! arrector muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000703 +name: ventral motor nucleus trigeminal nerve +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000703 +is_a: UBERON:0002633 ! motor nucleus of trigeminal nerve +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000704 +name: ventral pelvic arrector +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000704 +is_a: UBERON:0014795 ! pelvic appendage muscle +is_a: UBERON:2002147 ! arrector muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000707 +name: ventral zone +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000707 +is_a: UBERON:0002616 ! regional part of brain +relationship: part_of UBERON:2000392 ! median tuberal portion +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000708 +name: obsolete ventrolateral optic tract +namespace: uberon/phenoscape-anatomy +comment: removed axiom: part_of some 'optic tract'\nNot clear that directional labels for optic tract parts are consistent across taxa. To be reviewed. +xref: ZFA:0000708 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000710 +name: viscerosensory commissural nucleus of Cajal +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000710 +is_a: UBERON:0007635 ! nucleus of medulla oblongata +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000711 +name: DEL +namespace: uberon/phenoscape-anatomy +def: "A multilayer of deep cells of fairly uniform thickness that forms during early epiboly (at dome stage; upon conversion of the blastodisc to the blastoderm); during gastrulation the DEL (deep cell layer) gives rise to the epiblast and hypoblast. Kimmel et al, 1995." [ZFIN:curator] +synonym: "deep cell layer" EXACT [ZFIN:ZDB-PUB-961014-576] +synonym: "DEL cells" EXACT PLURAL [TAO:0000711] +xref: ZFA:0000711 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0004750 ! blastoderm +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000712 +name: internal yolk syncytial layer +namespace: uberon/phenoscape-anatomy +def: "The portion of the YSL that lies deep to the blastoderm during epiboly. Kimmel et al, 1995." [ZFIN:curator] +synonym: "I-YSL" EXACT [ZFIN:ZDB-PUB-961014-576] +xref: ZFA:0000712 +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:2000088 ! yolk syncytial layer +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000714 +name: obsolete accessory pretectal nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000714 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000715 +name: adductor hyohyoid +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000715 +is_a: UBERON:0005493 ! hyoid muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000716 +name: afferent portion of pharyngeal arch artery +def: "A section of a pharyngeal arch artery that delivers blood to the gills." [ISBN:0073040584] +synonym: "afferent branchial artery" EXACT [ZFA:0000716] +synonym: "afferent portion of branchial artery" EXACT [] +xref: TAO:0000716 +xref: ZFA:0000716 +is_a: UBERON:0003469 ! respiratory system artery +is_a: UBERON:0003496 ! head blood vessel +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0004363 ! pharyngeal arch artery +intersection_of: supplies UBERON:0011150 ! pharyngeal arch derived gill +relationship: branching_part_of UBERON:0004363 ! pharyngeal arch artery +relationship: part_of UBERON:0004363 ! pharyngeal arch artery +relationship: supplies UBERON:0011150 ! pharyngeal arch derived gill + +[Term] +id: UBERON:2000717 +name: apical ectodermal ridge median fin fold +namespace: uberon/phenoscape-anatomy +def: "Apical ectodermal ridge that is part of the median fin fold." [ZFIN:curator] +synonym: "apical ectodermal ridge median fin-fold" EXACT [TAO:0000717] +xref: ZFA:0000717 +is_a: UBERON:0004356 ! apical ectodermal ridge +relationship: part_of UBERON:2000040 ! median fin fold +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000718 +name: epaxial region somite 27 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000718 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2000931 ! myotome somite 27 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000719 +name: obsolete slow muscle cell somite 21 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 21" EXACT PLURAL [TAO:0000719] +xref: ZFA:0000719 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000720 +name: obsolete slow muscle cell somite 24 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 24" EXACT PLURAL [TAO:0000720] +xref: ZFA:0000720 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000721 +name: obsolete slow muscle cell somite 27 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 27" EXACT PLURAL [TAO:0000721] +xref: ZFA:0000721 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000722 +name: obsolete slow muscle cell somite 3 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 3" EXACT PLURAL [TAO:0000722] +xref: ZFA:0000722 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000723 +name: obsolete slow muscle cell somite 5 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 5" EXACT PLURAL [TAO:0000723] +xref: ZFA:0000723 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000724 +name: obsolete slow muscle cell somite 8 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 8" EXACT PLURAL [TAO:0000724] +xref: ZFA:0000724 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000725 +name: somite 11 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000725 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000726 +name: somite 14 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000726 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000727 +name: somite 17 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000727 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000728 +name: somite 2 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000728 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000729 +name: epaxial region somite 3 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000729 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2000932 ! myotome somite 3 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000730 +name: somite 23 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000730 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000731 +name: somite 27 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000731 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000732 +name: somite 3 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000732 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000733 +name: somite 7 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000733 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000734 +name: preural vertebra +namespace: uberon/phenoscape-anatomy +def: "Caudal vertebra that is one of the last caudal vertebrae anterior to the ural vertebrae that with its neural and haemal spines supports the procurrent caudal fin rays or lepidotrichia. The numbering of preural vertebrae is from caudal to rostral direction." [TAO:GA_TG] +comment: The term preural vertebra was created by Nybelin (1963) for those vertebrae supporting caudal procurrent rays. For additional information see Arratia and Schultze (1992). Their neural and hemal arches may or may not be fused to their corresponding autocentrum. Fusion or separation of certain neural and/or haemal arches of preural centra is characteristic or certain teleosts subgroup. The boundary between preural and ural region is determined by the bifurcation of the four or five blood vessels running inside the hemal arches of the preural vertebrae (primary caudal artery, two secondary arterial trunks, primary caudal vein, and secondary subvertebral vein) (for details see Schultze & Arratia, 1989). The bifurcation of the caudal artery and vein was proposed as a landmark to homologize preural centrum 1 throughout actinopterygians (Nybelin, 1963). +synonym: "caudal fin vertebra" EXACT [TAO:0000734] +synonym: "specialized centra/vertebrae" EXACT PLURAL [TAO:0000734] +xref: ZFA:0000734 +is_a: UBERON:0001095 ! caudal vertebra +is_a: UBERON:0004376 ! fin bone +relationship: part_of UBERON:4000167 ! caudal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000735 +name: hemal postzygapophysis +namespace: uberon/phenoscape-anatomy +def: "Paired, ventromedially directed processes on the posterior ends of the centra, ligamentously joined to the hemal postzygapophyses of the immediately posterior vertebra. The most posterior caudal vertebrae lack hemal postzygapophyses." [ZFIN:curator] +synonym: "haemal postzygapophysis" EXACT [TAO:0000735] +synonym: "hemal postygopophysis" EXACT [TAO:0000735] +synonym: "hemal postzygapophyses" EXACT PLURAL [TAO:0000735] +xref: ZFA:0000735 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004247 ! bone of dorsum +relationship: part_of UBERON:0006065 ! hemal arch +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000739 +name: epaxial region somite 11 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000739 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2000801 ! myotome somite 11 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000740 +name: epaxial region somite 5 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000740 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2000933 ! myotome somite 5 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000741 +name: epaxial region somite 14 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000741 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2000044 ! myotome somite 14 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000742 +name: epaxial region somite 17 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000742 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2001015 ! myotome somite 17 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000743 +name: epaxial region somite 2 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000743 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2001016 ! myotome somite 2 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000744 +name: epaxial region somite 22 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000744 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2001017 ! myotome somite 22 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000745 +name: epaxial region somite 25 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000745 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2001018 ! myotome somite 25 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000746 +name: epaxial region somite 28 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000746 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2001019 ! myotome somite 28 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000747 +name: epaxial region somite 30 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000747 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2001020 ! myotome somite 30 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000748 +name: epaxial region somite 6 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000748 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2001021 ! myotome somite 6 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000749 +name: epaxial region somite 9 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000749 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2001022 ! myotome somite 9 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000750 +name: obsolete fast muscle cell somite 10 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 10" EXACT PLURAL [TAO:0000750] +xref: ZFA:0000750 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000751 +name: epaxial region somite 8 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000751 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2000934 ! myotome somite 8 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000752 +name: obsolete fast muscle cell somite 13 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 13" EXACT PLURAL [TAO:0000752] +xref: ZFA:0000752 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000753 +name: obsolete fast muscle cell somite 16 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 16" EXACT PLURAL [TAO:0000753] +xref: ZFA:0000753 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000754 +name: obsolete fast muscle cell somite 19 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 19" EXACT PLURAL [TAO:0000754] +xref: ZFA:0000754 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000755 +name: obsolete fast muscle cell somite 21 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 21" EXACT PLURAL [TAO:0000755] +xref: ZFA:0000755 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000756 +name: obsolete fast muscle cell somite 24 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 24" EXACT PLURAL [TAO:0000756] +xref: ZFA:0000756 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000757 +name: obsolete fast muscle cell somite 27 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 27" EXACT PLURAL [TAO:0000757] +xref: ZFA:0000757 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000758 +name: obsolete fast muscle cell somite 3 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 3" EXACT PLURAL [TAO:0000758] +xref: ZFA:0000758 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000759 +name: obsolete fast muscle cell somite 5 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 5" EXACT PLURAL [TAO:0000759] +xref: ZFA:0000759 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000760 +name: obsolete fast muscle cell somite 8 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 8" EXACT PLURAL [TAO:0000760] +xref: ZFA:0000760 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000766 +name: granular layer valvula cerebelli +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000766 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:2000603 ! valvula cerebelli +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000767 +name: hypaxial region somite 11 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000767 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2000801 ! myotome somite 11 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000768 +name: hypaxial region somite 14 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000768 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2000044 ! myotome somite 14 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000769 +name: hypaxial region somite 17 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000769 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2001015 ! myotome somite 17 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000770 +name: hypaxial region somite 2 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000770 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2001016 ! myotome somite 2 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000771 +name: hypaxial region somite 22 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000771 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2001017 ! myotome somite 22 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000772 +name: hypaxial region somite 25 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000772 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2001018 ! myotome somite 25 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000773 +name: obsolete fast muscle cell somite 12 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 12" EXACT PLURAL [TAO:0000773] +xref: ZFA:0000773 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000774 +name: hypaxial region somite 28 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000774 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2001019 ! myotome somite 28 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000775 +name: hypaxial region somite 30 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000775 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2001020 ! myotome somite 30 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000776 +name: hypaxial region somite 6 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000776 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2001021 ! myotome somite 6 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000777 +name: hypaxial region somite 9 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000777 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2001022 ! myotome somite 9 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000778 +name: obsolete interneuron spinal cord +namespace: uberon/phenoscape-anatomy +synonym: "interneurons spinal cord" EXACT PLURAL [TAO:0000778] +xref: ZFA:0000778 +is_obsolete: true +replaced_by: CL:0005000 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000779 +name: lateral forebrain bundle telencephalon +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000779 +is_a: UBERON:2000597 ! telencephalic tracts +relationship: part_of UBERON:2007012 ! lateral forebrain bundle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000784 +name: obsolete fast muscle cell somite 15 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 15" EXACT PLURAL [TAO:0000784] +xref: ZFA:0000784 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000788 +name: mesenchyme dorsal fin +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000788 +is_a: UBERON:0003104 ! mesenchyme +relationship: part_of UBERON:2000102 ! dorsal fin fold +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000790 +name: obsolete muscle pioneer somite 10 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 10" EXACT PLURAL [TAO:0000790] +xref: ZFA:0000790 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000791 +name: obsolete muscle pioneer somite 13 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 13" EXACT PLURAL [TAO:0000791] +xref: ZFA:0000791 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000792 +name: obsolete muscle pioneer somite 16 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 16" EXACT PLURAL [TAO:0000792] +xref: ZFA:0000792 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000793 +name: obsolete muscle pioneer somite 19 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 19" EXACT PLURAL [TAO:0000793] +xref: ZFA:0000793 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000794 +name: obsolete muscle pioneer somite 22 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 22" EXACT PLURAL [TAO:0000794] +xref: ZFA:0000794 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000795 +name: obsolete fast muscle cell somite 18 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 18" EXACT PLURAL [TAO:0000795] +xref: ZFA:0000795 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000796 +name: obsolete muscle pioneer somite 25 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 25" EXACT PLURAL [TAO:0000796] +xref: ZFA:0000796 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000797 +name: obsolete muscle pioneer somite 28 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 28" EXACT PLURAL [TAO:0000797] +xref: ZFA:0000797 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000798 +name: obsolete muscle pioneer somite 30 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 30" EXACT PLURAL [TAO:0000798] +xref: ZFA:0000798 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000799 +name: obsolete muscle pioneer somite 6 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 6" EXACT PLURAL [TAO:0000799] +xref: ZFA:0000799 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000800 +name: obsolete muscle pioneer somite 9 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 9" EXACT PLURAL [TAO:0000800] +xref: ZFA:0000800 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000801 +name: myotome somite 11 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000801 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000725 ! somite 11 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000802 +name: myotome somite 15 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000802 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000852 ! somite 15 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000803 +name: myotome somite 18 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000803 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000853 ! somite 18 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000804 +name: myotome somite 20 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000804 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000156 ! somite 20 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000805 +name: myotome somite 23 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000805 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000730 ! somite 23 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000806 +name: obsolete fast muscle cell somite 20 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 20" EXACT PLURAL [TAO:0000806] +xref: ZFA:0000806 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000807 +name: myotome somite 26 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000807 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000074 ! somite 26 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000808 +name: myotome somite 29 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000808 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000981 ! somite 29 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000809 +name: myotome somite 4 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000809 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000857 ! somite 4 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000810 +name: myotome somite 7 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000810 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000733 ! somite 7 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000813 +name: infraorbital lateral line neuromast +namespace: uberon/phenoscape-anatomy +def: "Neuromast that is part of the infraorbital lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] +synonym: "neuromast infraorbital" EXACT [TAO:0000813] +synonym: "neuromasts infraorbital" EXACT PLURAL [TAO:0000813] +xref: ZFA:0000813 +is_a: UBERON:0008904 ! neuromast +relationship: part_of UBERON:0003094 ! infraorbital lateral line +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000814 +name: opercular lateral line neuromast +namespace: uberon/phenoscape-anatomy +def: "Neuromast that is part of the opercular lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] +synonym: "neuromast opercular" EXACT [TAO:0000814] +synonym: "neuromasts opercular" EXACT PLURAL [TAO:0000814] +xref: ZFA:0000814 +is_a: UBERON:0008904 ! neuromast +relationship: part_of UBERON:2000424 ! opercular lateral line +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000815 +name: nucleus of medial longitudinal fasciculus of medulla +subset: efo_slim +synonym: "nucleus of MLF medulla" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "nucleus of the medial longitudinal fasciculus medulla oblongata" EXACT [ZFA:0000815] +xref: EFO:0003577 +xref: TAO:0000815 +xref: ZFA:0000815 +is_a: UBERON:0007635 ! nucleus of medulla oblongata + +[Term] +id: UBERON:2000817 +name: obsolete fast muscle cell somite 23 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 23" EXACT PLURAL [TAO:0000817] +xref: ZFA:0000817 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000819 +name: obsolete postcommissural nucleus of V central entopeduncular nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000819 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000820 +name: presumptive neuron neural tube +namespace: uberon/phenoscape-anatomy +synonym: "presumptive neurons neural tube" EXACT PLURAL [TAO:0000820] +xref: ZFA:0000820 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0001049 ! neural tube +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000821 +name: obsolete primary neuron hindbrain +namespace: uberon/phenoscape-anatomy +synonym: "primary neurons hindbrain" EXACT PLURAL [TAO:0000821] +xref: ZFA:0000821 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000826 +name: central nucleus torus semicircularis +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000826 +is_a: UBERON:0011214 ! nucleus of midbrain tectum +relationship: part_of UBERON:2000599 ! torus semicircularis +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000827 +name: obsolete fast muscle cell somite 26 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 26" EXACT PLURAL [TAO:0000827] +xref: ZFA:0000827 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000829 +name: sclerotome somite 11 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000829 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000725 ! somite 11 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000830 +name: sclerotome somite 14 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000830 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000726 ! somite 14 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000831 +name: sclerotome somite 17 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000831 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000727 ! somite 17 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000832 +name: sclerotome somite 2 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000832 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000728 ! somite 2 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000833 +name: sclerotome somite 22 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000833 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000978 ! somite 22 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000834 +name: sclerotome somite 25 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000834 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000980 ! somite 25 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000835 +name: sclerotome somite 28 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000835 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000856 ! somite 28 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000836 +name: sclerotome somite 30 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000836 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000157 ! somite 30 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000837 +name: sclerotome somite 6 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000837 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000982 ! somite 6 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000838 +name: obsolete fast muscle cell somite 29 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 29" EXACT PLURAL [TAO:0000838] +xref: ZFA:0000838 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000839 +name: sclerotome somite 9 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000839 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000983 ! somite 9 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000840 +name: obsolete slow muscle cell somite 11 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 11" EXACT PLURAL [TAO:0000840] +xref: ZFA:0000840 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000841 +name: obsolete slow muscle cell somite 14 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 14" EXACT PLURAL [TAO:0000841] +xref: ZFA:0000841 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000842 +name: obsolete slow muscle cell somite 17 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 17" EXACT PLURAL [TAO:0000842] +xref: ZFA:0000842 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000843 +name: obsolete slow muscle cell somite 2 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 2" EXACT PLURAL [TAO:0000843] +xref: ZFA:0000843 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000844 +name: obsolete slow muscle cell somite 22 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 22" EXACT PLURAL [TAO:0000844] +xref: ZFA:0000844 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000845 +name: obsolete slow muscle cell somite 25 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 25" EXACT PLURAL [TAO:0000845] +xref: ZFA:0000845 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000846 +name: obsolete slow muscle cell somite 28 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 28" EXACT PLURAL [TAO:0000846] +xref: ZFA:0000846 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000847 +name: obsolete slow muscle cell somite 30 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 30" EXACT PLURAL [TAO:0000847] +xref: ZFA:0000847 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000848 +name: obsolete slow muscle cell somite 6 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 6" EXACT PLURAL [TAO:0000848] +xref: ZFA:0000848 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000849 +name: obsolete fast muscle cell somite 4 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 4" EXACT PLURAL [TAO:0000849] +xref: ZFA:0000849 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000850 +name: obsolete slow muscle cell somite 9 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 9" EXACT PLURAL [TAO:0000850] +xref: ZFA:0000850 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000851 +name: somite 12 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000851 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000852 +name: somite 15 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000852 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000853 +name: somite 18 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000853 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000854 +name: somite 21 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000854 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000855 +name: somite 24 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000855 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000856 +name: somite 28 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000856 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000857 +name: somite 4 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000857 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000858 +name: somite 8 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000858 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000859 +name: specialized hemal arch and spine +namespace: uberon/phenoscape-anatomy +synonym: "ha(pu)" EXACT [TAO:0000859] +synonym: "hemal arches (preural)" EXACT [ZFIN:ZDB-PUB-011008-1] +synonym: "specialized haemal arch and spine" EXACT [TAO:0000859] +synonym: "specialized hemal arches and spines" EXACT PLURAL [TAO:0000859] +xref: ZFA:0000859 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004376 ! fin bone +relationship: part_of UBERON:4000167 ! caudal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000860 +name: obsolete fast muscle cell somite 7 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 7" EXACT PLURAL [TAO:0000860] +xref: ZFA:0000860 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000862 +name: obsolete caudal fin skeleton +namespace: uberon/phenoscape-anatomy +def: "Median fin skeleton supporting the caudal fin." [TAO:wd] +is_obsolete: true +replaced_by: UBERON:4000167 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000864 +name: epaxial region somite 1 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000864 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2000924 ! myotome somite 1 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000865 +name: epaxial region somite 12 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000865 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2000926 ! myotome somite 12 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000866 +name: epaxial region somite 15 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000866 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2000802 ! myotome somite 15 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000867 +name: epaxial region somite 18 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000867 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2000803 ! myotome somite 18 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000868 +name: epaxial region somite 20 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000868 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2000804 ! myotome somite 20 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000869 +name: epaxial region somite 23 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000869 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2000805 ! myotome somite 23 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000870 +name: epaxial region somite 26 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000870 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2000807 ! myotome somite 26 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000872 +name: epaxial region somite 29 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000872 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2000808 ! myotome somite 29 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000873 +name: epaxial region somite 4 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000873 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2000809 ! myotome somite 4 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000874 +name: epaxial region somite 7 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. immel et al, 1995." [ZFIN:curator] +xref: ZFA:0000874 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2000810 ! myotome somite 7 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000876 +name: obsolete fast muscle cell somite 11 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 11" EXACT PLURAL [TAO:0000876] +xref: ZFA:0000876 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000877 +name: obsolete fast muscle cell somite 14 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 14" EXACT PLURAL [TAO:0000877] +xref: ZFA:0000877 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000878 +name: obsolete fast muscle cell somite 17 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 17" EXACT PLURAL [TAO:0000878] +xref: ZFA:0000878 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000879 +name: obsolete fast muscle cell somite 2 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 2" EXACT PLURAL [TAO:0000879] +xref: ZFA:0000879 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000880 +name: obsolete fast muscle cell somite 22 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 22" EXACT PLURAL [TAO:0000880] +xref: ZFA:0000880 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000881 +name: obsolete fast muscle cell somite 25 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 25" EXACT PLURAL [TAO:0000881] +xref: ZFA:0000881 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000883 +name: obsolete fast muscle cell somite 28 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 28" EXACT PLURAL [TAO:0000883] +xref: ZFA:0000883 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000884 +name: obsolete fast muscle cell somite 30 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 30" EXACT PLURAL [TAO:0000884] +xref: ZFA:0000884 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000885 +name: obsolete fast muscle cell somite 6 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 6" EXACT PLURAL [TAO:0000885] +xref: ZFA:0000885 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000886 +name: obsolete fast muscle cell somite 9 +namespace: uberon/phenoscape-anatomy +synonym: "fast muscle cells somite 9" EXACT PLURAL [TAO:0000886] +xref: ZFA:0000886 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000887 +name: floor plate neural rod +namespace: uberon/phenoscape-anatomy +synonym: "floorplate neural rod" EXACT [TAO:0000887] +xref: ZFA:0000887 +is_a: UBERON:0003079 ! floor plate +relationship: part_of UBERON:0005068 ! neural rod +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000891 +name: hypaxial region somite 1 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000891 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2000924 ! myotome somite 1 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000892 +name: hypaxial region somite 12 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000892 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2000926 ! myotome somite 12 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000894 +name: hypaxial region somite 15 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000894 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2000802 ! myotome somite 15 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000895 +name: hypaxial region somite 18 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000895 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2000803 ! myotome somite 18 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000896 +name: hypaxial region somite 20 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000896 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2000804 ! myotome somite 20 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000897 +name: hypaxial region somite 23 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000897 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2000805 ! myotome somite 23 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000898 +name: hypaxial region somite 26 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000898 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2000807 ! myotome somite 26 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000899 +name: hypaxial region somite 29 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000899 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2000808 ! myotome somite 29 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000900 +name: hypaxial region somite 4 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000900 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2000809 ! myotome somite 4 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000901 +name: hypaxial region somite 7 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000901 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2000810 ! myotome somite 7 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000902 +name: hypural musculature +namespace: uberon/phenoscape-anatomy +synonym: "hypural muscles" EXACT PLURAL [TAO:0000902] +xref: ZFA:0000902 +is_a: UBERON:0014892 ! skeletal muscle organ +relationship: part_of UBERON:2000628 ! caudal fin musculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000910 +name: medial forebrain bundle telencephalon +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000910 +is_a: UBERON:0003931 ! diencephalic white matter +is_a: UBERON:2000597 ! telencephalic tracts +relationship: part_of UBERON:0001910 ! medial forebrain bundle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000911 +name: transverse process of neural arch 3 +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone that is the anterodorsally oriented process of the third neural arch." [TAO:wd] +synonym: "anterodorsal process of neural arch 3" EXACT [TAO:0000911] +synonym: "transverse process of the third vertebra" EXACT [TAO:0000911] +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2001394 ! neural arch 3 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000912 +name: mesenchyme median fin fold +namespace: uberon/phenoscape-anatomy +synonym: "mesenchyme median fin-fold" EXACT [TAO:0000912] +xref: ZFA:0000912 +is_a: UBERON:0003104 ! mesenchyme +relationship: part_of UBERON:2000040 ! median fin fold +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000913 +name: molecular layer valvula cerebelli +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000913 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:2000603 ! valvula cerebelli +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000915 +name: obsolete muscle pioneer somite 11 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 11" EXACT PLURAL [TAO:0000915] +xref: ZFA:0000915 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000916 +name: obsolete muscle pioneer somite 14 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 14" EXACT PLURAL [TAO:0000916] +xref: ZFA:0000916 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000917 +name: obsolete muscle pioneer somite 17 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 17" EXACT PLURAL [TAO:0000917] +xref: ZFA:0000917 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000918 +name: obsolete muscle pioneer somite 20 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 20" EXACT PLURAL [TAO:0000918] +xref: ZFA:0000918 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000919 +name: obsolete muscle pioneer somite 23 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 23" EXACT PLURAL [TAO:0000919] +xref: ZFA:0000919 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000920 +name: obsolete muscle pioneer somite 26 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 26" EXACT PLURAL [TAO:0000920] +xref: ZFA:0000920 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000921 +name: obsolete muscle pioneer somite 29 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 29" EXACT PLURAL [TAO:0000921] +xref: ZFA:0000921 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000922 +name: obsolete muscle pioneer somite 4 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 4" EXACT PLURAL [TAO:0000922] +xref: ZFA:0000922 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000923 +name: obsolete muscle pioneer somite 7 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 7" EXACT PLURAL [TAO:0000923] +xref: ZFA:0000923 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000924 +name: myotome somite 1 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000924 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000072 ! somite 1 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000925 +name: hypaxial region somite 10 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000925 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2001013 ! myotome somite 10 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000926 +name: myotome somite 12 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000926 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000851 ! somite 12 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000927 +name: myotome somite 16 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000927 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000976 ! somite 16 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000928 +name: myotome somite 19 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995.>" [ZFIN:curator] +xref: ZFA:0000928 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000977 ! somite 19 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000929 +name: myotome somite 21 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000929 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000854 ! somite 21 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000930 +name: myotome somite 24 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000930 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000855 ! somite 24 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000931 +name: myotome somite 27 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000931 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000731 ! somite 27 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000932 +name: myotome somite 3 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000932 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000732 ! somite 3 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000933 +name: myotome somite 5 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000933 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000073 ! somite 5 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000934 +name: myotome somite 8 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000934 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000858 ! somite 8 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000936 +name: dorsal fin distal radial bone +namespace: uberon/phenoscape-anatomy +def: "dorsal fin distal radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +xref: ZFA:0000936 +is_a: UBERON:2001672 ! dorsal fin radial bone +is_a: UBERON:2100936 ! dorsal fin distal radial element +intersection_of: UBERON:2100936 ! dorsal fin distal radial element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2200936 ! dorsal fin distal radial cartilage + +[Term] +id: UBERON:2000937 +name: hypaxial region somite 13 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000937 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2001014 ! myotome somite 13 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000939 +name: middle lateral line neuromast +def: "Neuromast that is part of the middle lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] +subset: efo_slim +synonym: "neuromast middle" EXACT [TAO:0000939] +synonym: "neuromasts middle" EXACT PLURAL [TAO:0000939] +xref: EFO:0003592 +xref: TAO:0000939 +xref: ZFA:0000939 +is_a: UBERON:0008904 ! neuromast +intersection_of: UBERON:0008904 ! neuromast +intersection_of: part_of UBERON:0003096 ! middle lateral line +relationship: part_of UBERON:0003096 ! middle lateral line + +[Term] +id: UBERON:2000940 +name: posterior lateral line neuromast +namespace: uberon/phenoscape-anatomy +def: "Neuromast that is part of the posterior lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] +synonym: "neuromast posterior" EXACT [TAO:0000940] +synonym: "neuromasts posterior" EXACT PLURAL [TAO:0000940] +xref: ZFA:0000940 +is_a: UBERON:0008904 ! neuromast +relationship: develops_from UBERON:2001157 ! posterior lateral line primordium +relationship: part_of UBERON:0006334 ! posterior lateral line +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000941 +name: nucleus of the medial longitudinal fasciculus synencephalon +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000941 +is_a: UBERON:0006569 ! diencephalic nucleus +relationship: part_of UBERON:2000293 ! synencephalon +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000942 +name: obsolete paraxial mesenchyme +namespace: uberon/phenoscape-anatomy +is_obsolete: true +replaced_by: UBERON:0003077 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000946 +name: hypaxial region somite 16 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000946 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2000927 ! myotome somite 16 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000947 +name: dorsal fin proximal radial bone +namespace: uberon/phenoscape-anatomy +def: "dorsal fin proximal radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +synonym: "basal radial of dorsal fin" EXACT [TAO:0000947] +xref: ZFA:0000947 +is_a: UBERON:2001672 ! dorsal fin radial bone +is_a: UBERON:2100947 ! dorsal fin proximal radial element +intersection_of: UBERON:2100947 ! dorsal fin proximal radial element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2200947 ! dorsal fin proximal radial cartilage + +[Term] +id: UBERON:2000952 +name: sclerotome somite 1 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000952 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000072 ! somite 1 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000953 +name: sclerotome somite 12 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000953 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000851 ! somite 12 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000954 +name: sclerotome somite 15 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000954 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000852 ! somite 15 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000955 +name: sclerotome somite 18 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. immel et al, 1995." [ZFIN:curator] +xref: ZFA:0000955 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000853 ! somite 18 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000956 +name: sclerotome somite 20 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000956 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000156 ! somite 20 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000957 +name: hypaxial region somite 19 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000957 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2000928 ! myotome somite 19 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000958 +name: sclerotome somite 23 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000958 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000730 ! somite 23 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000959 +name: sclerotome somite 26 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000959 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000074 ! somite 26 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000960 +name: sclerotome somite 29 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000960 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000981 ! somite 29 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000961 +name: sclerotome somite 4 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000961 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000857 ! somite 4 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000962 +name: sclerotome somite 7 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000962 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000733 ! somite 7 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000963 +name: obsolete slow muscle cell somite 1 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 1" EXACT PLURAL [TAO:0000963] +xref: ZFA:0000963 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000964 +name: obsolete slow muscle cell somite 12 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 12" EXACT PLURAL [TAO:0000964] +xref: ZFA:0000964 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000965 +name: obsolete slow muscle cell somite 15 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 15" EXACT PLURAL [TAO:0000965] +xref: ZFA:0000965 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000966 +name: obsolete slow muscle cell somite 18 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 18" EXACT PLURAL [TAO:0000966] +xref: ZFA:0000966 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000967 +name: obsolete slow muscle cell somite 20 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 20" EXACT PLURAL [TAO:0000967] +xref: ZFA:0000967 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000968 +name: hypaxial region somite 21 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000968 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2000929 ! myotome somite 21 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000969 +name: obsolete slow muscle cell somite 23 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 23" EXACT PLURAL [TAO:0000969] +xref: ZFA:0000969 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000970 +name: obsolete slow muscle cell somite 26 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 26" EXACT PLURAL [TAO:0000970] +xref: ZFA:0000970 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000971 +name: obsolete slow muscle cell somite 29 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 29" EXACT PLURAL [TAO:0000971] +xref: ZFA:0000971 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000972 +name: obsolete slow muscle cell somite 4 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 4" EXACT PLURAL [TAO:0000972] +xref: ZFA:0000972 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000973 +name: obsolete slow muscle cell somite 7 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 7" EXACT PLURAL [TAO:0000973] +xref: ZFA:0000973 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000974 +name: somite 10 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000974 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000975 +name: somite 13 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000975 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000976 +name: somite 16 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000976 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000977 +name: somite 19 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000977 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000978 +name: somite 22 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000978 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000979 +name: hypaxial region somite 24 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000979 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2000930 ! myotome somite 24 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000980 +name: somite 25 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000980 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000981 +name: somite 29 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000981 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000982 +name: somite 6 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000982 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000983 +name: somite 9 +namespace: uberon/phenoscape-anatomy +def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000983 +is_a: UBERON:0002329 ! somite +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000984 +name: superior reticular formation tegmentum +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000984 +is_a: UBERON:0006331 ! brainstem nucleus +is_a: UBERON:0009661 ! midbrain nucleus +relationship: part_of UBERON:0001943 ! midbrain tegmentum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000985 +name: ventral rhombencephalic commissure medulla oblongata +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000985 +is_a: UBERON:0014649 ! white matter of medulla oblongata +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000986 +name: hypaxial region somite 27 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000986 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2000931 ! myotome somite 27 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000987 +name: hypaxial region somite 3 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000987 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2000932 ! myotome somite 3 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000988 +name: hypaxial region somite 5 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000988 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2000933 ! myotome somite 5 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000989 +name: hypaxial region somite 8 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000989 +is_a: UBERON:0003895 ! hypaxial myotome region +relationship: part_of UBERON:2000934 ! myotome somite 8 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000991 +name: epaxial region somite 10 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0000991 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2001013 ! myotome somite 10 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000993 +name: lateral wall neural rod +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000993 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0005068 ! neural rod +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2000997 +name: medial funicular nucleus trigeminal nuclei +namespace: uberon/phenoscape-anatomy +xref: ZFA:0000997 +is_a: UBERON:0004132 ! trigeminal sensory nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001001 +name: epaxial region somite 13 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001001 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2001014 ! myotome somite 13 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001002 +name: obsolete motor axons peripheral +namespace: uberon/phenoscape-anatomy +comment: removed axiom: part_of some 'central nervous system'\nSeems out of scope for uberon and/or not very useful as a class. +xref: ZFA:0001002 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001003 +name: obsolete muscle pioneer somite 12 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 12" EXACT PLURAL [TAO:0001003] +xref: ZFA:0001003 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001004 +name: obsolete muscle pioneer somite 15 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 15" EXACT PLURAL [TAO:0001004] +xref: ZFA:0001004 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001005 +name: obsolete muscle pioneer somite 18 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 18" EXACT PLURAL [TAO:0001005] +xref: ZFA:0001005 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001006 +name: obsolete muscle pioneer somite 21 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 21" EXACT PLURAL [TAO:0001006] +xref: ZFA:0001006 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001007 +name: obsolete muscle pioneer somite 24 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 24" EXACT PLURAL [TAO:0001007] +xref: ZFA:0001007 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001008 +name: obsolete muscle pioneer somite 27 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 27" EXACT PLURAL [TAO:0001008] +xref: ZFA:0001008 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001009 +name: obsolete muscle pioneer somite 3 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 3" EXACT PLURAL [TAO:0001009] +xref: ZFA:0001009 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001010 +name: obsolete muscle pioneer somite 5 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 5" EXACT PLURAL [TAO:0001010] +xref: ZFA:0001010 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001011 +name: obsolete muscle pioneer somite 8 +namespace: uberon/phenoscape-anatomy +synonym: "muscle pioneers somite 8" EXACT PLURAL [TAO:0001011] +xref: ZFA:0001011 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001012 +name: epaxial region somite 16 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001012 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2000927 ! myotome somite 16 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001013 +name: myotome somite 10 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001013 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000974 ! somite 10 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001014 +name: myotome somite 13 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001014 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000975 ! somite 13 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001015 +name: myotome somite 17 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. immel et al, 1995." [ZFIN:curator] +xref: ZFA:0001015 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000727 ! somite 17 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001016 +name: myotome somite 2 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001016 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000728 ! somite 2 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001017 +name: myotome somite 22 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001017 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000978 ! somite 22 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001018 +name: myotome somite 25 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001018 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000980 ! somite 25 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001019 +name: myotome somite 28 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001019 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000856 ! somite 28 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001020 +name: myotome somite 30 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001020 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000157 ! somite 30 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001021 +name: myotome somite 6 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001021 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000982 ! somite 6 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001022 +name: myotome somite 9 +namespace: uberon/phenoscape-anatomy +def: "Portion of the somite giving rise to body wall muscle masses. immel et al, 1995." [ZFIN:curator] +xref: ZFA:0001022 +is_a: UBERON:0003082 ! myotome +relationship: part_of UBERON:2000983 ! somite 9 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001023 +name: epaxial region somite 19 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001023 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2000928 ! myotome somite 19 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001025 +name: occipital lateral line neuromast +def: "A neuromast that is part of the occipital lateral line." [ZFIN:curator] +subset: efo_slim +synonym: "neuromast occipital" EXACT [TAO:0001025] +synonym: "neuromasts occipital" EXACT PLURAL [TAO:0001025] +xref: EFO:0003606 +xref: TAO:0001025 +xref: ZFA:0001025 +is_a: UBERON:0008904 ! neuromast +intersection_of: UBERON:0008904 ! neuromast +intersection_of: part_of UBERON:0003093 ! occipital lateral line +relationship: part_of UBERON:0003093 ! occipital lateral line + +[Term] +id: UBERON:2001026 +name: supraorbital lateral line neuromast +def: "A neuromast that is part of the supraorbital lateral line." [ZFIN:curator] +subset: efo_slim +synonym: "neuromast supraorbital" EXACT [TAO:0001026] +synonym: "neuromasts supraorbital" EXACT PLURAL [TAO:0001026] +xref: EFO:0003607 +xref: TAO:0001026 +xref: ZFA:0001026 +is_a: UBERON:0008904 ! neuromast +intersection_of: UBERON:0008904 ! neuromast +intersection_of: part_of UBERON:0003090 ! supraorbital lateral line +relationship: part_of UBERON:0003090 ! supraorbital lateral line + +[Term] +id: UBERON:2001028 +name: hypurapophysis +namespace: uberon/phenoscape-anatomy +def: "Lateral process, spine-like or crest-like, at the lateral wall of the haemal arch of the parhypural that serves for insertion of the hypochordal longitudinal muscle. The process may contribute to the lateral protection of the parhypural foramen (where the caudal blood vessels exit the hemal arch) and the hypural foramen (where a caudal heart may be present). The hypurapophysis is paired." [ZFIN:curator] +comment: The structure, the processus parhypurale, was given the name of hypurapophysis by Nursall (1963). Additional processes may be present on the lateral walls of hypurals 1 and 2 in some teleost subgroups. They are named primary, secondary hypurapophyses, etc. +synonym: "hypurapophyses" EXACT PLURAL [TAO:0001028] +synonym: "parhypurapophyses" EXACT [TAO:0001028] +synonym: "parhypurapophyses processes" EXACT [TAO:0001028] +xref: ZFA:0001028 +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2000438 ! parhypural +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001030 +name: epaxial region somite 21 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001030 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2000929 ! myotome somite 21 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001036 +name: sclerotome somite 10 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001036 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000974 ! somite 10 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001037 +name: sclerotome somite 13 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001037 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000975 ! somite 13 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001038 +name: sclerotome somite 16 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001038 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000976 ! somite 16 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001039 +name: sclerotome somite 19 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001039 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000977 ! somite 19 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001040 +name: epaxial region somite 24 +namespace: uberon/phenoscape-anatomy +def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001040 +is_a: UBERON:0003900 ! epaxial myotome region +relationship: part_of UBERON:2000930 ! myotome somite 24 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001041 +name: sclerotome somite 21 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001041 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000854 ! somite 21 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001042 +name: sclerotome somite 24 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001042 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000855 ! somite 24 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001043 +name: sclerotome somite 27 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001043 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000731 ! somite 27 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001044 +name: sclerotome somite 3 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001044 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000732 ! somite 3 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001045 +name: sclerotome somite 5 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001045 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000073 ! somite 5 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001046 +name: sclerotome somite 8 +namespace: uberon/phenoscape-anatomy +def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001046 +is_a: UBERON:0003089 ! sclerotome +relationship: part_of UBERON:2000858 ! somite 8 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001047 +name: obsolete slow muscle cell somite 10 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 10" EXACT PLURAL [TAO:0001047] +xref: ZFA:0001047 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001048 +name: obsolete slow muscle cell somite 13 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 13" EXACT PLURAL [TAO:0001048] +xref: ZFA:0001048 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001049 +name: obsolete slow muscle cell somite 16 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 16" EXACT PLURAL [TAO:0001049] +xref: ZFA:0001049 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001050 +name: obsolete slow muscle cell somite 19 +namespace: uberon/phenoscape-anatomy +synonym: "slow muscle cells somite 19" EXACT PLURAL [TAO:0001050] +xref: ZFA:0001050 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001051 +name: caudal division of the internal carotid artery +namespace: uberon/phenoscape-anatomy +synonym: "CaDI" EXACT [TAO:0001051] +xref: ZFA:0001051 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001532 ! internal carotid artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001052 +name: primordial hindbrain channel +namespace: uberon/phenoscape-anatomy +def: "The paired vessels that run along the lateral walls of the hindbrain and drain into the anterior cardinal veins. Isogai et al. (2002)" [ZFIN:curator] +synonym: "medial head vein" EXACT [TAO:0001052] +synonym: "PHCB" EXACT [TAO:0001052] +xref: ZFA:0001052 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001053 +name: future internal carotid artery +synonym: "PICA" EXACT [TAO:0001053] +synonym: "primitive internal carotid artery" EXACT [ZFA:0001053] +xref: EFO:0003612 +xref: TAO:0001053 +xref: ZFA:0001053 +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0004363 ! pharyngeal arch artery +relationship: part_of UBERON:0001530 {source="EHDAA2"} ! common carotid artery plus branches + +[Term] +id: UBERON:2001054 +name: lateral dorsal aorta +namespace: uberon/phenoscape-anatomy +def: "Connect the outflow of the aortic arches to the dorsal aorta. The place where the lateral dorsal aorta fuse is is called the radiax of the aorta. Isogai et al. 2001." [ZFIN:curator] +synonym: "LDA" EXACT [TAO:0001054] +xref: ZFA:0001054 +is_a: UBERON:0001637 ! artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001055 +name: pronephric duct opening +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001055 +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0003060 ! pronephric duct +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001058 +name: obsolete caudal fin +namespace: uberon/phenoscape-anatomy +def: "The caudal fin is the most posterior median fin. It is composed of a complex of three modified centra and modified neural and hemal arches and spines. Mabee and Bird, 2001." [ZFIN:curator] +synonym: "nageoire caudale" EXACT [PSPUB:0000164] +synonym: "tail" EXACT [TAO:0001058] +synonym: "tail fin" EXACT [TAO:0001058] +synonym: "uroptère" EXACT [PSPUB:0000135] +synonym: "uroptérygie" EXACT [PSPUB:0000140] +is_obsolete: true +replaced_by: UBERON:4000164 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001059 +name: cranial division of the internal carotid artery +namespace: uberon/phenoscape-anatomy +synonym: "CrDI" EXACT [TAO:0001059] +synonym: "rostral division of the internal carotid artery" EXACT [TAO:0001059] +xref: ZFA:0001059 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001532 ! internal carotid artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001060 +name: basidorsal +namespace: uberon/phenoscape-anatomy +def: "Basidorsals are bilaterally paired cartilages on the dorsolateral side of the notochord which are replaced by ossified neural arches or dorsal arcocentra. In otophysan fishes, basidorsal 1, bd2, bd3, and bd4 give rise to parts of the Weberian apparatus." [ZFIN:curator] +synonym: "arcualia" EXACT [TAO:0001060] +xref: ZFA:0001060 +is_a: UBERON:2001457 ! postcranial axial cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001062 +name: presumptive mesencephalic artery +def: "precursor to mesencephalic artery" [http://orcid.org/0000-0002-6601-2165] +subset: efo_slim +synonym: "PMsA" EXACT [TAO:0001062] +synonym: "primitive mesencephalic artery" EXACT [ZFA:0001062] +xref: EFO:0003615 +xref: TAO:0001062 +xref: ZFA:0001062 +is_a: UBERON:0001637 ! artery +intersection_of: UBERON:0001637 ! artery +intersection_of: has_potential_to_develop_into UBERON:0001634 ! mesencephalic artery +relationship: has_potential_to_develop_into UBERON:0001634 ! mesencephalic artery + +[Term] +id: UBERON:2001063 +name: posterior caudal vein +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001063 +is_a: UBERON:0003481 ! tail vein +relationship: part_of UBERON:0010204 ! tail vasculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001065 +name: obsolete lateral mesoderm +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001065 +is_obsolete: true +replaced_by: UBERON:0003081 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001069 +name: ventral fin fold +namespace: uberon/phenoscape-anatomy +synonym: "anal fin fold" EXACT [TAO:0001069] +synonym: "anal fin-fold" EXACT [TAO:0001069] +synonym: "tail fin fold" EXACT [TAO:0001069] +synonym: "tail fin-fold" EXACT [TAO:0001069] +synonym: "ventral fin" EXACT [TAO:0001069] +synonym: "ventral fin-fold" EXACT [TAO:0001069] +xref: ZFA:0001069 +is_a: UBERON:0000481 ! multi-tissue structure +relationship: part_of UBERON:2000040 ! median fin fold +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001073 +name: axial vasculature +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001073 +is_a: UBERON:0002049 ! vasculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001076 +name: intestinal bulb +namespace: uberon/phenoscape-anatomy +def: "This anteriormost portion of the intestine has the most digestive enzymes and the greatest epithelial surface area. Wallace et al, 2005." [ZFIN:curator] +synonym: "anterior intestine" EXACT [TAO:0001076] +xref: ZFA:0001076 +is_a: UBERON:0000481 ! multi-tissue structure +relationship: part_of UBERON:0000160 ! intestine +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001086 +name: obsolete muscle pioneer +namespace: uberon/phenoscape-anatomy +comment: this class and all children are being obsoleted from uberon because they were unnecessarily generalized into TAO and because they are cell types. +synonym: "muscle pioneers" EXACT PLURAL [TAO:0001086] +synonym: "non migratory adaxial cells" EXACT [TAO:0001086] +xref: ZFA:0001086 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001089 +name: myoseptum +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001089 +is_a: UBERON:0000476 ! acellular anatomical structure +relationship: part_of UBERON:0003082 ! myotome +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001093 +name: obsolete unspecified +namespace: uberon/phenoscape-anatomy +def: "Annotation with this anatomy term indicates that a structure was not specified by the author." [ZFIN:curator] +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001095 +name: immature macula +namespace: uberon/phenoscape-anatomy +def: "An otic sensory epithelium that will develop into the mature macula." [ZFA:0001095] +synonym: "immature maculae" EXACT PLURAL [TAO:0001095] +synonym: "immature sensory patch" EXACT [TAO:0001095] +synonym: "immature sensory patches" EXACT [TAO:0001095] +xref: ZFA:0001095 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0003051 ! ear vesicle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001096 +name: immature anterior macula +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001096 +is_a: UBERON:2001095 ! immature macula +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001097 +name: immature posterior macula +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001097 +is_a: UBERON:2001095 ! immature macula +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001098 +name: obsolete immature hair cell anterior macula +namespace: uberon/phenoscape-anatomy +synonym: "immature sensory hair cells anterior macula" EXACT PLURAL [TAO:0001098] +xref: ZFA:0001098 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001099 +name: obsolete immature hair cell posterior macula +namespace: uberon/phenoscape-anatomy +synonym: "immature sensory hair cells posterior macula" EXACT PLURAL [TAO:0001099] +xref: ZFA:0001099 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001102 +name: immature anterior otolith +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2000139 ! immature otolith +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001103 +name: immature posterior otolith +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2000139 ! immature otolith +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001109 +name: obsolete oocyte +namespace: uberon/phenoscape-anatomy +synonym: "egg" EXACT [TAO:0001109] +xref: ZFA:0001109 +is_obsolete: true +consider: CL:0000023 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001118 +name: urogenital papilla +namespace: uberon/phenoscape-anatomy +def: "A protuberance in front of the gential pore and behind the vent. Mature females have a well developed urogenital papillae whilst in mature males it is poorly developed. Brion et al, 2004." [ZFIN:curator] +synonym: "anal papilla" EXACT [TAO:0001118] +synonym: "anal papillae" EXACT [TAO:0001118] +synonym: "genital papilla" EXACT [TAO:0001118] +synonym: "UGP" EXACT [TAO:0001118] +synonym: "urogenital papillae" EXACT PLURAL [TAO:0001118] +xref: ZFA:0001118 +is_a: UBERON:0003102 ! surface structure +relationship: part_of UBERON:0000990 ! reproductive system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001123 +name: obsolete median fin skeleton +namespace: uberon/phenoscape-anatomy +def: "Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism." [TAO:wd] +synonym: "axial fin skeleton" EXACT [TAO:0001123] +synonym: "unpaired fin skeleton" EXACT [TAO:0001123] +is_obsolete: true +replaced_by: UBERON:4000170 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001124 +name: obsolete dorsal fin skeleton +namespace: uberon/phenoscape-anatomy +def: "Median fin skeleton located on the dorsal surface of the organism." [TAO:wd] +is_obsolete: true +replaced_by: UBERON:4000168 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001125 +name: organizer inducing center +namespace: uberon/phenoscape-anatomy +def: "The dorsal marginal region of the YSL where maternal dorsal determinants localize. Participates in positioning the shield. Ho et al, 1999." [ZFIN:curator] +synonym: "Nieuwkoop center" EXACT [TAO:0001125] +xref: ZFA:0001125 +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:2000088 ! yolk syncytial layer +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001126 +name: noninvoluting endocytic marginal cell cluster +namespace: uberon/phenoscape-anatomy +def: "The NEM cell cluster lies in a superficial position of the dorsal blastoderm margin encompassing EVL cells and one or two layers of underlying deep cells. Unlike other marginal blastomeres, cells in this cluster do not participate in involution. Cooper et al, 1996." [ZFIN:curator] +synonym: "NEM" EXACT [TAO:0001126] +synonym: "noninvoluting endocytic marginal cells" EXACT PLURAL [TAO:0001126] +xref: ZFA:0001126 +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0004879 ! marginal zone of embryo +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001129 +name: pharyngeal pouches 2-6 +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001129 +is_a: UBERON:0004117 ! pharyngeal pouch +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001137 +name: ventral tooth row +namespace: uberon/phenoscape-anatomy +def: "Tooth row that is the ventralmost row of teeth on ceratobranchial 5 bone." [TAO:wd] +xref: ZFA:0001137 +is_a: UBERON:0009678 ! tooth row +relationship: composed_primarily_of UBERON:2000694 ! ceratobranchial 5 tooth +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001139 +name: mediodorsal tooth row +namespace: uberon/phenoscape-anatomy +def: "Tooth row that is the mediodorsal row of teeth on ceratobranchial 5 bone, located between the dorsal tooth row and ventral tooth row." [TAO:wd] +xref: ZFA:0001139 +is_a: UBERON:0009678 ! tooth row +relationship: composed_primarily_of UBERON:2000694 ! ceratobranchial 5 tooth +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001140 +name: dorsal tooth row +namespace: uberon/phenoscape-anatomy +def: "Tooth row that is the dorsalmost row of teeth on ceratobranchial 5 bone." [TAO:wd] +xref: ZFA:0001140 +is_a: UBERON:0009678 ! tooth row +relationship: composed_primarily_of UBERON:2000694 ! ceratobranchial 5 tooth +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001141 +name: tooth 1V +namespace: uberon/phenoscape-anatomy +def: "Ceratobranchial 5 tooth which is the anteriormost tooth in the ventral tooth row." [TAO:wd] +xref: ZFA:0001141 +is_a: UBERON:2000694 ! ceratobranchial 5 tooth +relationship: part_of UBERON:2001137 ! ventral tooth row +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001142 +name: tooth 5V +namespace: uberon/phenoscape-anatomy +def: "Ceratobranchial 5 tooth which is the posteriormost tooth in the ventral tooth row." [TAO:wd] +xref: ZFA:0001142 +is_a: UBERON:2000694 ! ceratobranchial 5 tooth +relationship: part_of UBERON:2001137 ! ventral tooth row +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001143 +name: tooth 4V +namespace: uberon/phenoscape-anatomy +def: "Ceratobranchial 5 tooth which is posterior to tooth 3V and anterior to tooth 5V in the ventral tooth row." [TAO:wd] +xref: ZFA:0001143 +is_a: UBERON:2000694 ! ceratobranchial 5 tooth +relationship: part_of UBERON:2001137 ! ventral tooth row +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001144 +name: tooth 2V +namespace: uberon/phenoscape-anatomy +def: "Ceratobranchial 5 tooth which is posterior to tooth 1V and anterior to tooth 3V in the ventral tooth row." [TAO:wd] +xref: ZFA:0001144 +is_a: UBERON:2000694 ! ceratobranchial 5 tooth +relationship: part_of UBERON:2001137 ! ventral tooth row +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001145 +name: tooth 3V +namespace: uberon/phenoscape-anatomy +def: "Ceratobranchial 5 tooth which is posterior to tooth 2V and anterior to tooth 4V in the ventral tooth row." [TAO:wd] +xref: ZFA:0001145 +is_a: UBERON:2000694 ! ceratobranchial 5 tooth +relationship: part_of UBERON:2001137 ! ventral tooth row +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001146 +name: tooth 1MD +namespace: uberon/phenoscape-anatomy +def: "Ceratobranchial 5 tooth which is the anteriormost tooth in the mediodorsal tooth row." [TAO:wd] +xref: ZFA:0001146 +is_a: UBERON:2000694 ! ceratobranchial 5 tooth +relationship: part_of UBERON:2001139 ! mediodorsal tooth row +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001147 +name: tooth 2MD +namespace: uberon/phenoscape-anatomy +def: "Ceratobranchial 5 tooth which is posterior to tooth 1MD and anterior to tooth 3MD in the mediodorsal tooth row." [TAO:wd] +xref: ZFA:0001147 +is_a: UBERON:2000694 ! ceratobranchial 5 tooth +relationship: part_of UBERON:2001139 ! mediodorsal tooth row +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001148 +name: tooth 1D +namespace: uberon/phenoscape-anatomy +def: "Ceratobranchial 5 tooth which is the anteriormost tooth in the dorsal tooth row." [TAO:wd] +xref: ZFA:0001148 +is_a: UBERON:2000694 ! ceratobranchial 5 tooth +relationship: part_of UBERON:2001140 ! dorsal tooth row +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001150 +name: tooth 2D +namespace: uberon/phenoscape-anatomy +def: "Ceratobranchial 5 tooth which is the posteriormost tooth in the dorsal tooth row." [TAO:wd] +xref: ZFA:0001150 +is_a: UBERON:2000694 ! ceratobranchial 5 tooth +relationship: part_of UBERON:2001140 ! dorsal tooth row +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001151 +name: tooth 4MD +namespace: uberon/phenoscape-anatomy +def: "Ceratobranchial 5 tooth which is the posteriormost tooth in the mediodorsal tooth row." [TAO:wd] +xref: ZFA:0001151 +is_a: UBERON:2000694 ! ceratobranchial 5 tooth +relationship: part_of UBERON:2001139 ! mediodorsal tooth row +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001152 +name: tooth 3MD +namespace: uberon/phenoscape-anatomy +def: "Ceratobranchial 5 tooth which is posterior to tooth 2MD and anterior to tooth 4MD in the mediodorsal tooth row." [TAO:wd] +xref: ZFA:0001152 +is_a: UBERON:2000694 ! ceratobranchial 5 tooth +relationship: part_of UBERON:2001139 ! mediodorsal tooth row +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001154 +name: anal fin musculature +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001154 +is_a: UBERON:0007271 ! appendage musculature +relationship: part_of UBERON:4000163 ! anal fin +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001156 +name: posterior lateral line placode +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001156 +is_a: UBERON:0003067 ! dorsolateral placode +disjoint_from: UBERON:2001316 {source="lexical"} ! anterior lateral line placode +relationship: part_of UBERON:2001471 ! posterior lateral line system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001157 +name: posterior lateral line primordium +namespace: uberon/phenoscape-anatomy +def: "A migrating group of cells originating from the posterior lateral line placode. The primordium deposits seven to nine neuromasts and interneuromasts between them during its posterior migration to the tail. Gompel et al, 2001." [ZFIN:curator] +synonym: "posterior lateral line primordia" EXACT PLURAL [TAO:0001157] +xref: ZFA:0001157 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:2000228 ! lateral line primordium +relationship: develops_from UBERON:2001156 ! posterior lateral line placode +relationship: part_of UBERON:2001471 ! posterior lateral line system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001160 +name: dorsal scute +namespace: uberon/phenoscape-anatomy +def: "Scute that is a bony plate that forms in dorsal midline of body margin between the skull and dorsal fin." [TAO:wd] +is_a: UBERON:2002294 ! fish scute +relationship: part_of UBERON:0002090 ! postcranial axial skeleton +relationship: part_of UBERON:2001248 ! dorsal scute series +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001162 +name: obsolete anal fin +namespace: uberon/phenoscape-anatomy +def: "Median fin that is located posterior to the anus." [TAO:wd] +synonym: "nageoire anale" EXACT [PSPUB:0000164] +synonym: "proctoptère" EXACT [PSPUB:0000136] +synonym: "proctoptérygie" EXACT [PAPUB:0000142, PSPUB:0000140] +is_obsolete: true +replaced_by: UBERON:4000163 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001163 +name: supraneural 7 bone +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001163 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:2000442 ! supraneural bone +is_a: UBERON:4300219 ! supraneural 7 element +intersection_of: UBERON:4300219 ! supraneural 7 element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:4300266 ! supraneural 7 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001164 +name: supraneural 6 bone +namespace: uberon/phenoscape-anatomy +synonym: "sn6" EXACT [TAO:0001164] +xref: ZFA:0001164 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:2000442 ! supraneural bone +is_a: UBERON:4300218 ! supraneural 6 element +intersection_of: UBERON:4300218 ! supraneural 6 element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:4300265 ! supraneural 6 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001165 +name: supraneural 5 bone +namespace: uberon/phenoscape-anatomy +synonym: "sn5" EXACT [TAO:0001165] +xref: ZFA:0001165 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:2000442 ! supraneural bone +is_a: UBERON:4300217 ! supraneural 5 element +intersection_of: UBERON:4300217 ! supraneural 5 element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:4300264 ! supraneural 5 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001166 +name: supraneural 9 bone +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001166 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:2000442 ! supraneural bone +is_a: UBERON:4300221 ! supraneural 9 element +intersection_of: UBERON:4300221 ! supraneural 9 element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:4300268 ! supraneural 9 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001167 +name: vertebral element 1 +namespace: none +is_a: UBERON:0010913 ! vertebral element + +[Term] +id: UBERON:2001168 +name: vertebral element 2 +namespace: none +def: "Vertebra that is posteriorly adjacent to vertebra 1." [] +is_a: UBERON:0010913 ! vertebral element + +[Term] +id: UBERON:2001169 +name: vertebral element 3 +namespace: uberon/phenoscape-anatomy +def: "Vertebra that is posteriorly adjacent to vertebra 2." [TAO:wd] +xref: ZFA:0001169 +is_a: UBERON:0010913 ! vertebral element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001170 +name: vertebral element 4 +namespace: uberon/phenoscape-anatomy +def: "Vertebra that is posteriorly adjacent to vertebra 5." [TAO:wd] +xref: ZFA:0001170 +is_a: UBERON:0010913 ! vertebral element +relationship: overlaps UBERON:2001940 ! vertebra 4-vertebra 5 joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001171 +name: os suspensorium +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone and Weberian ossicle that is an element of the fourth vertebra that curves ventrally around the anterior head of the swim bladder." [ZFIN:curator] +synonym: "fifth Weberian ossicle" EXACT [TAO:0001171] +synonym: "Weberian ossicle 5" EXACT [TAO:0001171] +xref: ZFA:0001171 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:2000461 ! Weberian ossicle +relationship: part_of UBERON:2001170 ! vertebral element 4 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001172 +name: roofing cartilage +namespace: uberon/phenoscape-anatomy +def: "Cartilaginous larval structure dorsal to the four anterior-most vertebrae, which forms the connection between neural arches and supraneurals in the Weberian apparatus. Bird and Mabee, 2003." [ZFIN:curator] +xref: ZFA:0001172 +is_a: UBERON:2001457 ! postcranial axial cartilage +relationship: part_of UBERON:2001191 ! supraneural 2 bone +relationship: part_of UBERON:2001192 ! supraneural 3 bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001179 +name: epidermal superficial stratum +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001179 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: develops_from UBERON:0003055 ! periderm +relationship: part_of UBERON:0001003 ! skin epidermis +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001181 +name: epidermal intermediate stratum +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001181 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001003 ! skin epidermis +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001183 +name: dermal superficial region +namespace: uberon/phenoscape-anatomy +synonym: "stratum laxum" EXACT [TAO:0001183] +xref: ZFA:0001183 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0002067 ! dermis +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001186 +name: collagenous dermal stroma +namespace: uberon/phenoscape-anatomy +def: "A layer of collagen fibrils present in the imature integument in an acellular subepidermal space. At first, the fibrils are all oriented in the same direction, later they form the complex plywood-like structure that is characteristic of the dermal deep region. Le Guellec et al, 2004." [ZFIN:curator] +synonym: "primary dermal stroma" EXACT [TAO:0001186] +xref: ZFA:0001186 +is_a: UBERON:0000476 ! acellular anatomical structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0002067 ! dermis +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001188 +name: Weberian apparatus +namespace: uberon/phenoscape-anatomy +def: "Anatomical cluster that consists of the anteriormost vertebrae and associated structures that connect the swim bladder to the inner ear." [ZFIN:curator] +comment: Vertebra 1-4, and sometimes vertebra 5 in some catfishes, are part of the Weberian apparatus. Weberian apparatus is present in Otophysi. +xref: ZFA:0001188 +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0001130 ! vertebral column +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001190 +name: Weberian vertebra +namespace: uberon/phenoscape-anatomy +def: "Vertebra that is part of the Weberian apparatus." [ZFIN:curator] +comment: Weberian vertebra are usually vertebra 1-4. Present in Otophysi. +synonym: "Weberian vertebrae" EXACT PLURAL [TAO:0001190] +xref: ZFA:0001190 +is_a: UBERON:4300223 ! precaudal vertebra +relationship: part_of UBERON:2001188 ! Weberian apparatus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001191 +name: supraneural 2 bone +namespace: uberon/phenoscape-anatomy +def: "Supraneural bone located dorsal to vertebra 2." [ZFIN:curator] +comment: In otophysans, supraneural 2 bone is part of the neural complex. +synonym: "small supraneural" EXACT [TAO:doi\:10.1046/j.1096-3642.2002.00014.x] +synonym: "sn2" EXACT [TAO:0001191] +xref: ZFA:0001191 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:2000442 ! supraneural bone +is_a: UBERON:4300214 ! supraneural 2 element +intersection_of: UBERON:4300214 ! supraneural 2 element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2001869 ! supraneural 2 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001192 +name: supraneural 3 bone +namespace: uberon/phenoscape-anatomy +def: "Supraneural bone that is located dorsal to vertebrae 3 and 4." [ZFIN:curator] +comment: In otophysans, supraneural 3 bone is part of the neural complex and fuses in development with neural arches 3 and 4. +synonym: "large supraneural" EXACT [TAO:doi\:10.1046/j.1096-3642.2002.00014.x] +synonym: "sn3" EXACT [TAO:0001192] +xref: ZFA:0001192 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:2000442 ! supraneural bone +is_a: UBERON:4300215 ! supraneural 3 element +intersection_of: UBERON:4300215 ! supraneural 3 element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2001870 ! supraneural 3 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001193 +name: supraneural 8 bone +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001193 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:2000442 ! supraneural bone +is_a: UBERON:4300220 ! supraneural 8 element +intersection_of: UBERON:4300220 ! supraneural 8 element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:4300267 ! supraneural 8 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001200 +name: corpuscles of Stannius +namespace: uberon/phenoscape-anatomy +def: "Islands of eosinic cells found on the lateroventral surface of the kidney. Function is thought to be that of the parathyroid gland in other vertebrates, which are lacking in fishes. These cells secrete hypocalcin (teleocalcin) to regulate calcium metabolism." [ZFIN:curator] +xref: ZFA:0001200 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0002368 ! endocrine gland +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005172 ! abdomen element +relationship: part_of UBERON:0000080 ! mesonephros +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001201 +name: ventral lateral mesoderm +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001201 +is_a: UBERON:2000083 ! ventral mesoderm +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001203 +name: obsolete ciliary body +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001203 +is_obsolete: true +replaced_by: UBERON:0001775 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001220 +name: basibranchial copula +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal arch cartilage that is ventral, median, and associated with more than one pharyngeal arch in the pharyngeal arch 3-7 skeleton." [ZFIN:curator] +synonym: "copula" RELATED [TAO:0001220] +synonym: "copulae" RELATED PLURAL [TAO:0001220] +xref: ZFA:0001220 +is_a: UBERON:0011004 ! pharyngeal arch cartilage +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001221 +name: anterior copula +namespace: uberon/phenoscape-anatomy +def: "Copula that is ventral, median, and associated with pharyngeal arches 3-5." [ZFIN:curator] +synonym: "anterior basibranchial copula " EXACT [TAO:0001221] +synonym: "copula 1" BROAD [TAO:0001221] +synonym: "copula 2" BROAD [TAO:0001221] +xref: ZFA:0001221 +is_a: UBERON:2001220 ! basibranchial copula +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001222 +name: posterior copula +namespace: uberon/phenoscape-anatomy +def: "Copula that is ventral, median, and associated with branchial arches 4 and 5 (pharyngeal arches 6-7)." [ZFIN:curator] +synonym: "copula 2" EXACT [TAO:0001222] +synonym: "copula 3" RELATED [TAO:0001222] +synonym: "posterior basibranchial copula" EXACT [TAO:0001222] +synonym: "posterior copula" EXACT [TAO:0001222] +xref: ZFA:0001222 +is_a: UBERON:2001220 ! basibranchial copula +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001223 +name: basibranchial 1 bone +namespace: uberon/phenoscape-anatomy +def: "Basibranchial bone that is ventral, median, and associated with branchial arch 1 (pharyngeal arch 3). Typically develops in the anterior copula cartilage." [ZFIN:curator] +xref: ZFA:0001223 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004740 ! basibranchial bone +is_a: UBERON:2001915 ! basibranchial 1 element +intersection_of: UBERON:2001915 ! basibranchial 1 element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2001864 ! basibranchial 1 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001224 +name: basibranchial 2 bone +namespace: uberon/phenoscape-anatomy +def: "Basibranchial bone that is ventral, median, and associated with branchial arch 2 (pharyngeal arch 4). Typically develops in the anterior copula cartilage." [ZFIN:curator] +xref: ZFA:0001224 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004740 ! basibranchial bone +is_a: UBERON:2001916 ! basibranchial 2 element +intersection_of: UBERON:2001916 ! basibranchial 2 element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2001874 ! basibranchial 2 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001225 +name: basibranchial 3 bone +namespace: uberon/phenoscape-anatomy +def: "Basibranchial bone that is ventral, median, and associated with branchial arch 3 (pharyngeal arch 5). Typically develops in the anterior copula cartilage." [ZFIN:curator] +xref: ZFA:0001225 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004740 ! basibranchial bone +is_a: UBERON:2001917 ! basibranchial 3 element +intersection_of: UBERON:2001917 ! basibranchial 3 element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2001876 ! basibranchial 3 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001226 +name: basibranchial 4 bone +namespace: uberon/phenoscape-anatomy +def: "Basibranchial bone that is ventral, median, and associated with branchial arch 4 (pharyngeal arch 6). Develops in posterior copula cartilage or basibranchial 4 cartilage." [ZFIN:curator] +xref: ZFA:0001226 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004740 ! basibranchial bone +is_a: UBERON:2001918 ! basibranchial 4 element +intersection_of: UBERON:2001918 ! basibranchial 4 element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2001865 ! basibranchial 4 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001228 +name: pharyngeal arch 3 skeleton +namespace: uberon/phenoscape-anatomy +synonym: "branchial arch 1 skeleton" EXACT [TAO:0001228] +synonym: "gill arch 1 skeleton" EXACT [TAO:0001228] +synonym: "visceral arch 3 skeleton" EXACT [TAO:0001228] +xref: ZFA:0001228 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010912 ! subdivision of skeleton +relationship: develops_from UBERON:0003114 ! pharyngeal arch 3 +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001229 +name: pharyngeal arch 7 skeleton +namespace: uberon/phenoscape-anatomy +synonym: "branchial arch 5 skeleton" EXACT [TAO:0001229] +synonym: "gill arch 5 skeleton" EXACT [TAO:0001229] +synonym: "visceral arch 7 skeleton" EXACT [TAO:0001229] +xref: ZFA:0001229 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010912 ! subdivision of skeleton +relationship: develops_from UBERON:0011087 ! pharyngeal arch 7 +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001230 +name: pharyngeal arch 6 skeleton +namespace: uberon/phenoscape-anatomy +synonym: "branchial arch 4 skeleton" EXACT [TAO:0001230] +synonym: "gill arch 4 skeleton" EXACT [TAO:0001230] +synonym: "visceral arch 6 skeleton" EXACT [TAO:0001230] +xref: ZFA:0001230 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010912 ! subdivision of skeleton +relationship: develops_from UBERON:0003117 ! pharyngeal arch 6 +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001231 +name: pharyngeal arch 4 skeleton +namespace: uberon/phenoscape-anatomy +synonym: "branchial arch 2 skeleton" EXACT [TAO:0001231] +synonym: "gill arch 2 skeleton" EXACT [TAO:0001231] +synonym: "visceral arch 4 skeleton" EXACT [TAO:0001231] +xref: ZFA:0001231 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010912 ! subdivision of skeleton +relationship: develops_from UBERON:0003115 ! pharyngeal arch 4 +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001232 +name: pharyngeal arch 5 skeleton +namespace: uberon/phenoscape-anatomy +synonym: "branchial arch 3 skeleton" EXACT [TAO:0001232] +synonym: "gill arch 3 skeleton" EXACT [TAO:0001232] +synonym: "visceral arch 5 skeleton" EXACT [TAO:0001232] +xref: ZFA:0001232 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010912 ! subdivision of skeleton +relationship: develops_from UBERON:0003116 ! pharyngeal arch 5 +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001233 +name: hypobranchial 1 bone +namespace: uberon/phenoscape-anatomy +def: "Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 1 element laterally. Develops in hypobranchial 1 cartilage." [ZFIN:curator] +xref: ZFA:0001233 +is_a: UBERON:2000363 ! hypobranchial bone +is_a: UBERON:2001894 ! hypobranchial 1 element +relationship: develops_from UBERON:2001524 ! hypobranchial 1 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001234 +name: hypobranchial 4 bone +namespace: uberon/phenoscape-anatomy +def: "Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 4 element laterally. Develops in hypobranchial 4 cartilage." [ZFIN:curator] +xref: ZFA:0001234 +is_a: UBERON:2000363 ! hypobranchial bone +is_a: UBERON:2001897 ! hypobranchial 4 element +relationship: develops_from UBERON:2001523 ! hypobranchial 4 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001235 +name: hypobranchial 3 bone +namespace: uberon/phenoscape-anatomy +def: "Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 3 element laterally. Develops in hypobranchial 3 cartilage." [ZFIN:curator] +xref: ZFA:0001235 +is_a: UBERON:2000363 ! hypobranchial bone +is_a: UBERON:2001896 ! hypobranchial 3 element +relationship: develops_from UBERON:2001526 ! hypobranchial 3 cartilage +relationship: overlaps UBERON:2001863 ! inter-hypobranchial 3 joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001236 +name: hypobranchial 2 bone +namespace: uberon/phenoscape-anatomy +def: "Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 2 element laterally. Develops in hypobranchial 2 cartilage." [ZFIN:curator] +xref: ZFA:0001236 +is_a: UBERON:2000363 ! hypobranchial bone +is_a: UBERON:2001895 ! hypobranchial 2 element +relationship: develops_from UBERON:2001525 ! hypobranchial 2 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001237 +name: ceratobranchial 1 bone +namespace: uberon/phenoscape-anatomy +def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 1 cartilage or bone." [ZFIN:curator] +xref: ZFA:0001237 +is_a: UBERON:2000488 ! ceratobranchial bone +is_a: UBERON:2001899 ! ceratobranchial 1 element +relationship: develops_from UBERON:2001520 ! ceratobranchial 1 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001239 +name: ceratobranchial 5 bone +namespace: uberon/phenoscape-anatomy +def: "Ceratobranchial bone that is the most posterior, bilaterally paired ventral pharyngeal arch bone." [ZFIN:curator] +comment: Synonym 'lower pharyngeal' from Weitzman, 1962.\nSynonym 'inferior pharyngeal bone' from Saxena, S.C. (1960). The cranial musculature of a hill-stream cyprinid fish Garra mullya (Sykes). Proceedings of the National Institute of Science in India. 26B(4): 176-188.\nSynonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bone musculature of the carp, Cyprinus carpio. Journal of Morphology. 134(2): 131-140. +synonym: "inferior pharyngeal bone" EXACT [TAO:0001239] +synonym: "lower pharyngeal" EXACT [TAO:0001239] +xref: ZFA:0001239 +is_a: UBERON:2000488 ! ceratobranchial bone +is_a: UBERON:2001903 ! ceratobranchial 5 element +relationship: develops_from UBERON:2001521 ! ceratobranchial 5 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001240 +name: ceratobranchial 4 bone +namespace: uberon/phenoscape-anatomy +def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone." [ZFIN:curator] +xref: ZFA:0001240 +is_a: UBERON:2000488 ! ceratobranchial bone +is_a: UBERON:2001902 ! ceratobranchial 4 element +relationship: develops_from UBERON:2001519 ! ceratobranchial 4 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001241 +name: ceratobranchial 3 bone +namespace: uberon/phenoscape-anatomy +def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone." [ZFIN:curator] +xref: ZFA:0001241 +is_a: UBERON:2000488 ! ceratobranchial bone +is_a: UBERON:2001901 ! ceratobranchial 3 element +relationship: develops_from UBERON:2001518 ! ceratobranchial 3 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001242 +name: ceratobranchial 2 bone +namespace: uberon/phenoscape-anatomy +def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone." [ZFIN:curator] +xref: ZFA:0001242 +is_a: UBERON:2000488 ! ceratobranchial bone +is_a: UBERON:2001900 ! ceratobranchial 2 element +relationship: develops_from UBERON:2001517 ! ceratobranchial 2 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001243 +name: epibranchial 1 bone +namespace: uberon/phenoscape-anatomy +def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone and medially with pharyngobranchial cartilage or bone." [ZFIN:curator] +xref: ZFA:0001243 +is_a: UBERON:2000658 ! epibranchial bone +is_a: UBERON:2001905 ! epibranchial 1 element +relationship: develops_from UBERON:2001528 ! epibranchial 1 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001244 +name: epibranchial 5 cartilage +namespace: uberon/phenoscape-anatomy +def: "Epibranchial cartilage that is bilaterally paired and located at the articulation of epibranchial 4 cartilage or bone and the posterior tip of ceratobranchial 4 cartilage or bone." [ZFIN:curator] +synonym: "accessory cartilage" EXACT [TAO:0001244] +synonym: "interbranchial" EXACT [TAO:0001244] +synonym: "interbranchial IV" EXACT [TAO:0001244] +xref: ZFA:0001244 +is_a: UBERON:2001527 ! epibranchial cartilage +relationship: part_of UBERON:2001229 ! pharyngeal arch 7 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001245 +name: epibranchial 4 bone +namespace: uberon/phenoscape-anatomy +def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone and medially with pharyngobranchial cartilage or bone." [ZFIN:curator] +xref: ZFA:0001245 +is_a: UBERON:2000658 ! epibranchial bone +is_a: UBERON:2001908 ! epibranchial 4 element +relationship: develops_from UBERON:2001531 ! epibranchial 4 cartilage +relationship: overlaps UBERON:2001860 ! epibranchial 4-upper pharyngeal toothplate joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001246 +name: epibranchial 2 bone +namespace: uberon/phenoscape-anatomy +def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone and medially with pharyngobranchial cartilage or bone." [ZFIN:curator] +xref: ZFA:0001246 +is_a: UBERON:2000658 ! epibranchial bone +is_a: UBERON:2001906 ! epibranchial 2 element +relationship: develops_from UBERON:2001530 ! epibranchial 2 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001247 +name: epibranchial 3 bone +namespace: uberon/phenoscape-anatomy +def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone and medially with pharyngobranchial cartilage or bone." [ZFIN:curator] +xref: ZFA:0001247 +is_a: UBERON:2000658 ! epibranchial bone +is_a: UBERON:2001907 ! epibranchial 3 element +relationship: develops_from UBERON:2001529 ! epibranchial 3 cartilage +relationship: overlaps UBERON:2001861 ! epibranchial 3-pharyngobranchial 3 joint +relationship: overlaps UBERON:2001862 ! epibranchial 3-pharyngobranchial 4 joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001248 +name: dorsal scute series +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000477 ! anatomical cluster +intersection_of: UBERON:0000477 ! anatomical cluster +intersection_of: composed_primarily_of UBERON:2001160 ! dorsal scute +relationship: composed_primarily_of UBERON:2001160 ! dorsal scute +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001250 +name: pharyngobranchial 2 bone +namespace: uberon/phenoscape-anatomy +def: "Pharyngobranchial bone, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 1 element." [ZFIN:curator] +synonym: "infrapharyngobranchial 2" EXACT [TAO:0001250] +xref: ZFA:0001250 +is_a: UBERON:2000527 ! pharyngobranchial bone +is_a: UBERON:2001911 ! pharyngobranchial 2 element +relationship: develops_from UBERON:2001536 ! pharyngobranchial 2 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001251 +name: pharyngobranchial 4 cartilage +namespace: uberon/phenoscape-anatomy +def: "Most posterior pharyngobranchial cartilage, located medial to the epibranchials." [ZFIN:curator] +synonym: "infrapharyngobranchial 4 cartilage" EXACT [TAO:0001251] +synonym: "infrapharyngobranchials" EXACT PLURAL [TAO:0001251] +xref: ZFA:0001251 +is_a: UBERON:2001533 ! pharyngobranchial cartilage +is_a: UBERON:2001913 ! pharyngobranchial 4 element +relationship: overlaps UBERON:2001862 ! epibranchial 3-pharyngobranchial 4 joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001252 +name: pharyngobranchial 3 bone +namespace: uberon/phenoscape-anatomy +def: "Pharyngobranchial bone, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 2 element." [TAO:wd] +synonym: "infrapharyngobranchial 3" EXACT [TAO:0001252] +xref: ZFA:0001252 +is_a: UBERON:2000527 ! pharyngobranchial bone +is_a: UBERON:2001912 ! pharyngobranchial 3 element +relationship: develops_from UBERON:2001534 ! pharyngobranchial 3 cartilage +relationship: overlaps UBERON:2001861 ! epibranchial 3-pharyngobranchial 3 joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001253 +name: neural arch 2 +namespace: uberon/phenoscape-anatomy +def: "Neural arch that is the second after the neurocranium." [TAO:wd] +is_a: UBERON:0003861 ! neural arch +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001254 +name: abdominal scute series +namespace: uberon/phenoscape-anatomy +synonym: "abdominal scutes" EXACT PLURAL [TAO:0001254] +is_a: UBERON:0000477 ! anatomical cluster +intersection_of: UBERON:0000477 ! anatomical cluster +intersection_of: composed_primarily_of UBERON:2001547 ! abdominal scute +relationship: composed_primarily_of UBERON:2001547 ! abdominal scute +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001256 +name: lateral floor plate +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001256 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0003079 ! floor plate +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001257 +name: medial floor plate +namespace: uberon/phenoscape-anatomy +def: "The medial portion of the spinal cord floor plate, located adjacent to the notochord." [ZFIN:curator] +xref: ZFA:0001257 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0003079 ! floor plate +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001259 +name: forebrain ventricle +namespace: uberon/phenoscape-anatomy +synonym: "forebrain vesicle" EXACT [TAO:0001259] +synonym: "prosencephalic ventricle" EXACT [TAO:0001259] +xref: ZFA:0001259 +is_obsolete: true +replaced_by: UBERON:0006284 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001263 +name: ovarian follicle stage I +namespace: uberon/phenoscape-anatomy +def: "Stage I follicles (less than 140 microns) are primary growth stage. Selman et al, 1993." [ZFIN:curator] +synonym: "previtillogenic ovarian follicle" EXACT [TAO:0001263] +xref: ZFA:0001263 +is_a: UBERON:0001305 ! ovarian follicle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001265 +name: ovarian follicle stage II +namespace: uberon/phenoscape-anatomy +def: "Stage II follicles (140-340 microns) are cortical alveolus stage. Selman et al, 1993." [ZFIN:curator] +xref: ZFA:0001265 +is_a: UBERON:0001305 ! ovarian follicle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001266 +name: ovarian follicle stage III +namespace: uberon/phenoscape-anatomy +def: "Stage III (340-690 microns) are vitellogenesis. Selman et al, 1993." [ZFIN:curator] +xref: ZFA:0001266 +is_a: UBERON:0001305 ! ovarian follicle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001269 +name: regenerating fin/limb +def: "Fin or limb undergoing the process of regeneration." [https://orcid.org/0000-0002-6601-2165] +subset: efo_slim +synonym: "regenerating fins" NARROW PLURAL [ZFA:0001269] +xref: EFO:0003657 +xref: TAO:0001269 +xref: ZFA:0001269 +is_a: UBERON:0004708 ! paired limb/fin +is_a: UBERON:0007567 ! regenerating anatomical structure + +[Term] +id: UBERON:2001274 +name: coronomeckelian +namespace: uberon/phenoscape-anatomy +def: "Tendon bone located on the median side of the lower jaw, dorsal to Meckel's cartilage and medial to the angular. The coronomeckelian forms as an ossification of the tendon of the adductor mandibulae muscle. The coronomeckelian is a paired bone." [ZFIN:curator] +synonym: "sesamoid articular" EXACT [TAO:0001274] +synonym: "sesamoid coronoid" EXACT [TAO:0001274] +xref: ZFA:0001274 +is_a: UBERON:0004768 ! bone of lower jaw +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:4000134 ! ossified tendon +relationship: part_of UBERON:0003113 ! dermatocranium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001275 +name: sublingual +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone that is the median element of the ventral hyoid arch, generally lying between the paired ventral hypohyals." [TAO:je] +is_a: UBERON:0002513 ! endochondral bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001277 +name: anterior chamber swim bladder +namespace: uberon/phenoscape-anatomy +def: "The anterior compartment of the swim bladder is thought to have acoustic resonance properties that play a key role in audition. It is connected to the posterior chamber via the dusctus communicans. Finney et al, 2006." [ZFIN:curator] +xref: ZFA:0001277 +is_a: UBERON:0000481 ! multi-tissue structure +relationship: part_of UBERON:0006860 ! swim bladder +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001278 +name: posterior chamber swim bladder +namespace: uberon/phenoscape-anatomy +def: "The posterior compartment of the swim bladder plays a key role in buoyancy control. It is connected to the anterior chamber via the dusctus communicans. Finney et al, 2006." [ZFIN:curator] +xref: ZFA:0001278 +is_a: UBERON:0000481 ! multi-tissue structure +relationship: part_of UBERON:0006860 ! swim bladder +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001279 +name: branchiostegal ray 1 +namespace: uberon/phenoscape-anatomy +def: "Branchiostegal ray that is the anterior-most ray in the adult." [ZFIN:curator] +xref: ZFA:0001279 +is_a: UBERON:2000476 ! branchiostegal ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001280 +name: branchiostegal ray 3 +namespace: uberon/phenoscape-anatomy +def: "Branchiostegal ray that is the third anterior-most ray in the adult." [ZFIN:curator] +xref: ZFA:0001280 +is_a: UBERON:2000476 ! branchiostegal ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001281 +name: branchiostegal ray 2 +namespace: uberon/phenoscape-anatomy +def: "Branchiostegal ray that is the second anterior-most ray in the adult." [ZFIN:curator] +xref: ZFA:0001281 +is_a: UBERON:2000476 ! branchiostegal ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001285 +name: obsolete intersegmental vessel +namespace: uberon/phenoscape-anatomy +synonym: "intersegmental vessels" EXACT PLURAL [TAO:0001285] +synonym: "intersomitic vessels" EXACT [TAO:0001285] +synonym: "Se" EXACT [TAO:0001285] +xref: ZFA:0001285 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001286 +name: caudal vein plexus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001286 +is_a: UBERON:0010204 ! tail vasculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001293 +name: posterior kidney +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001293 +is_a: UBERON:0003103 ! compound organ +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005172 ! abdomen element +relationship: develops_from UBERON:0002120 ! pronephros +relationship: part_of UBERON:0000080 ! mesonephros +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001297 +name: vagal placode 1 +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001297 +is_a: UBERON:0003078 ! epibranchial placode +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001298 +name: vagal placode 2 +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001298 +is_a: UBERON:0003078 ! epibranchial placode +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001299 +name: vagal placode 3 +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001299 +is_a: UBERON:0003078 ! epibranchial placode +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001300 +name: vagal placode 4 +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001300 +is_a: UBERON:0003078 ! epibranchial placode +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001302 +name: vagal ganglion 1 +namespace: uberon/phenoscape-anatomy +synonym: "gX1" EXACT [TAO:0001302] +synonym: "nodose ganglion 1" EXACT [TAO:0001302] +xref: ZFA:0001302 +is_a: UBERON:0009127 ! epibranchial ganglion +relationship: develops_from UBERON:2001297 ! vagal placode 1 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001303 +name: vagal ganglion 2 +namespace: uberon/phenoscape-anatomy +synonym: "gX2" EXACT [TAO:0001303] +synonym: "nodose ganglion 2" EXACT [TAO:0001303] +xref: ZFA:0001303 +is_a: UBERON:0009127 ! epibranchial ganglion +relationship: develops_from UBERON:2001298 ! vagal placode 2 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001304 +name: vagal ganglion 3 +namespace: uberon/phenoscape-anatomy +synonym: "gX3" EXACT [TAO:0001304] +synonym: "nodose ganglion 3" EXACT [TAO:0001304] +xref: ZFA:0001304 +is_a: UBERON:0009127 ! epibranchial ganglion +relationship: develops_from UBERON:2001299 ! vagal placode 3 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001305 +name: vagal ganglion 4 +namespace: uberon/phenoscape-anatomy +synonym: "gX4" EXACT [TAO:0001305] +synonym: "nodose ganglion 4" EXACT [TAO:0001305] +xref: ZFA:0001305 +is_a: UBERON:0009127 ! epibranchial ganglion +relationship: develops_from UBERON:2001300 ! vagal placode 4 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001312 +name: dorsal anterior lateral line ganglion +subset: efo_slim +synonym: "anterodorsal lateral line ganglion" EXACT [TAO:0001312] +xref: EFO:0003674 +xref: TAO:0001312 +xref: ZFA:0001312 +is_a: UBERON:2001391 ! anterior lateral line ganglion +relationship: develops_from UBERON:2001316 ! anterior lateral line placode + +[Term] +id: UBERON:2001313 +name: ventral anterior lateral line ganglion +namespace: uberon/phenoscape-anatomy +synonym: "anteroventral lateral line ganglion" EXACT [TAO:0001313] +xref: ZFA:0001313 +is_a: UBERON:2001391 ! anterior lateral line ganglion +relationship: develops_from UBERON:2001316 ! anterior lateral line placode +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001314 +name: posterior lateral line ganglion +namespace: uberon/phenoscape-anatomy +def: "The posterior lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the posterior lateral line system." [ZFIN:curator] +xref: ZFA:0001314 +is_a: UBERON:2000120 ! lateral line ganglion +disjoint_from: UBERON:2001391 {source="lexical"} ! anterior lateral line ganglion +relationship: develops_from UBERON:2001156 ! posterior lateral line placode +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001316 +name: anterior lateral line placode +def: "Dorsolateral placode that gives rise to the anterior lateral line." [ZFA:0001316, ZFA:curator] +subset: efo_slim +synonym: "anterior lateral line placodes" RELATED PLURAL [ZFA:0001316] +synonym: "pre-auditory lateral line placode" RELATED [XAO:0004221] +xref: EFO:0003461 +xref: TAO:0001316 +xref: XAO:0004221 +xref: ZFA:0001316 +is_a: UBERON:0003067 ! dorsolateral placode +intersection_of: UBERON:0003067 ! dorsolateral placode +intersection_of: part_of UBERON:2001468 ! anterior lateral line system +relationship: part_of UBERON:2001468 ! anterior lateral line system + +[Term] +id: UBERON:2001322 +name: obsolete dorsoventral diencephalic tract +namespace: uberon/phenoscape-anatomy +def: "A tract originating in the epiphysis and fasiculating with the tract of the postoptic commissure. Ross et al, 1992." [ZFIN:curator] +synonym: "DVDT" EXACT [TAO:0001322] +xref: ZFA:0001322 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001324 +name: enteric musculature +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001324 +is_a: UBERON:0000383 ! musculature of body +relationship: part_of UBERON:0001555 ! digestive tract +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001333 +name: sublingual dorsal and ventral fused +namespace: uberon/phenoscape-anatomy +def: "Sublingual that is the single element resulting from the fusion of the sublingual dorsal ossification and sublingual ventral ossification." [TAO:wd] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:2001275 ! sublingual +relationship: develops_from UBERON:2001475 ! sublingual dorsal ossification +relationship: develops_from UBERON:2001476 ! sublingual ventral ossification +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001335 +name: supradorsal +namespace: uberon/phenoscape-anatomy +def: "Supradorsals are small paired nodules of cartilage positioned at the distal ends of neural arches and the proximal end of neural spines (Arratia et al., 2001)." [ZFIN:curator] +xref: ZFA:0001335 +is_a: UBERON:2001457 ! postcranial axial cartilage +relationship: part_of UBERON:0003861 ! neural arch +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001337 +name: obsolete spermatogonia +namespace: uberon/phenoscape-anatomy +xref: ZFA:0009007 +is_obsolete: true +replaced_by: CL:0000020 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001339 +name: obsolete nucleus of the tract of the anterior commissure +namespace: uberon/phenoscape-anatomy +def: "Telencephalic nucleus containing the cell bodies of neurons whose axons form the anterior commissure." [ZFIN:curator] +synonym: "ntAC" EXACT [TAO:0001339] +xref: ZFA:0001339 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001340 +name: nucleus of the tract of the postoptic commissure +namespace: uberon/phenoscape-anatomy +def: "The nucleus containing the cell bodies of neurons whose axons form the postoptic commissure." [ZFIN:curator] +synonym: "ntPOC" EXACT [TAO:0001340] +xref: ZFA:0001340 +is_a: UBERON:0006569 ! diencephalic nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001341 +name: intervening zone +namespace: uberon/phenoscape-anatomy +def: "A zone of delayed differentiation at the midbrainhindbrain boundary. The IZ separates midbrain from anterior hindbrain neuronal clusters and has been described in all vertebrates. Geling et al, 2003." [ZFIN:curator] +synonym: "IZ" EXACT [TAO:0001341] +xref: ZFA:0001341 +is_a: UBERON:0000477 ! anatomical cluster +relationship: develops_from UBERON:2001342 ! presumptive intervening zone +relationship: part_of UBERON:0003052 ! midbrain-hindbrain boundary +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001342 +name: presumptive intervening zone +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001342 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:2007023 ! posterior neural keel +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001343 +name: telencephalon diencephalon boundary +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001343 +is_a: UBERON:0006800 ! anatomical line +relationship: part_of UBERON:0001890 ! forebrain +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001347 +name: stratum fibrosum et griseum superficiale +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001347 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001945 ! superior colliculus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001348 +name: stratum marginale +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001348 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001945 ! superior colliculus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001349 +name: stratum opticum +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001349 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001945 ! superior colliculus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001352 +name: stratum periventriculare +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001352 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001945 ! superior colliculus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001354 +name: obsolete mesencephalic tegmentum +namespace: uberon/phenoscape-anatomy +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001357 +name: alar plate midbrain +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001357 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001891 ! midbrain +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001359 +name: obsolete pineal complex +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001359 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001360 +name: obsolete parapineal organ +namespace: uberon/phenoscape-anatomy +def: "An unpaired left-sided accessory organ which plays a role in establishing lateral brain left right asymmetry. Gamse et al, 2003." [ZFIN:curator] +xref: ZFA:0001360 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001361 +name: basiventral +namespace: uberon/phenoscape-anatomy +def: "Basiventrals are bilaterally paired cartilages lateral to the notochord which are replaced by ossified parapophyses or hemal arches." [ZFIN:curator] +synonym: "arcualia" RELATED [TAO:0001361] +xref: ZFA:0001361 +is_a: UBERON:2001457 ! postcranial axial cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001363 +name: neural complex of Weberian apparatus +namespace: uberon/phenoscape-anatomy +alt_id: UBERON:2001398 +def: "Anatomical cluster that consists of supraneural 2 bone and supraneural 3 bone and their extensions, and which is part of the Weberian apparatus." [ZFIN:curator] +synonym: "neural complex" BROAD [] +synonym: "Weberian supraneural" EXACT [TAO:0001363] +xref: ZFA:0001363 +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:2001188 ! Weberian apparatus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001364 +name: hemal spine +namespace: uberon/phenoscape-anatomy +def: "Hemal spines are extensions of hemal arches in the ventral skeletogenous septum of the caudal region." [ZFIN:curator] +synonym: "haemacanthe" EXACT [PSPUB:0000115] +synonym: "haemal spine" EXACT [TAO:0001364] +synonym: "hémacanthe" EXACT [PSPUB:0000143] +synonym: "épine hémale" EXACT [PSPUB:0000164] +xref: ZFA:0001364 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004247 ! bone of dorsum +relationship: part_of UBERON:0006065 ! hemal arch +relationship: part_of UBERON:2002098 ! hemal spine series +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001366 +name: tract of the postoptic commissure +namespace: uberon/phenoscape-anatomy +synonym: "TPOC" EXACT [TAO:0001366] +xref: ZFA:0001366 +is_a: UBERON:0003931 ! diencephalic white matter +relationship: part_of UBERON:0003936 ! postoptic commissure +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001371 +name: pancreatic system +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001371 +is_a: UBERON:0000467 ! anatomical system +relationship: part_of UBERON:0000949 ! endocrine system +relationship: part_of UBERON:0001007 ! digestive system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001373 +name: obsolete migratory slow muscle precursor cell +namespace: uberon/phenoscape-anatomy +def: "Cells that initially are located adjacent to the spinal cord and notochord along that migrate from their initial medial position radially through the myotome to the lateral surface of the somites." [ZFIN:curator] +comment: likely very zebrafish specific so being obsoleted for now. +synonym: "migratory slow muscle precursor cells" EXACT PLURAL [TAO:0001373] +xref: ZFA:0001373 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001378 +name: axial hypoblast +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001378 +is_a: UBERON:0005291 ! embryonic tissue +relationship: develops_from UBERON:0003062 ! primitive knot +relationship: part_of UBERON:0000089 ! hypoblast (generic) +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001382 +name: epibranchial bone uncinate process +namespace: uberon/phenoscape-anatomy +def: "Epibranchials 1-3 in adults are compound elements formed by the fusion of epibranchial cartilages and the so-called uncinate processes. Posteromedially directed uncinate processes develop on the posterior edge of epibranchials 1-3. These appear as separate centers of chondrification (6.2 mm) that later fuse laterally to the posterior edges of the epibranchial cartilages (6.8 mm)." [ZFIN:curator] +xref: ZFA:0001382 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2000658 ! epibranchial bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001388 +name: epithelial mesenchymal boundary of regenerating fin/limb +def: "A epithelial-mesenchymal boundary that is part of a regenerating fin/limb." [OBOL:automatic] +xref: TAO:0001388 +xref: ZFA:0001388 +is_a: UBERON:0012437 ! epithelial-mesenchymal boundary +intersection_of: UBERON:0012437 ! epithelial-mesenchymal boundary +intersection_of: part_of UBERON:2001269 ! regenerating fin/limb +relationship: part_of UBERON:2001269 ! regenerating fin/limb + +[Term] +id: UBERON:2001389 +name: regeneration epithelium of fin/limb +def: "A epithelium that is part of a regenerating fin/limb." [OBOL:automatic] +subset: efo_slim +synonym: "epidermal cap" BROAD [ZFA:0001389] +synonym: "epidermal cap of fin" EXACT [] +synonym: "wound epidermis" BROAD [ZFA:0001389] +synonym: "wound epidermis of fin" EXACT [] +synonym: "wound epithelium" BROAD [ZFA:0001389] +synonym: "wound epithelium of fin" EXACT [] +xref: EFO:0003682 +xref: TAO:0001389 +xref: ZFA:0001389 +is_a: UBERON:0000483 ! epithelium +intersection_of: UBERON:0000483 ! epithelium +intersection_of: part_of UBERON:2001269 ! regenerating fin/limb +relationship: part_of UBERON:2001269 ! regenerating fin/limb + +[Term] +id: UBERON:2001391 +name: anterior lateral line ganglion +namespace: none +def: "The anteror lateral line ganglia develops from cranial ectodermal placodes and contain sensory neurons that innervate the anterior lateral line system." [ZFIN:curator] +subset: efo_slim +synonym: "anterior lateral line ganglia" RELATED PLURAL [TAO:0001391] +xref: EFO:0003683 +xref: TAO:0001391 +xref: ZFA:0001391 +is_a: UBERON:2000120 ! lateral line ganglion +intersection_of: UBERON:2000120 ! lateral line ganglion +intersection_of: part_of UBERON:2001468 ! anterior lateral line system +relationship: part_of UBERON:2001468 ! anterior lateral line system + +[Term] +id: UBERON:2001392 +name: parapophysis 1 +namespace: uberon/phenoscape-anatomy +def: "Parapophysis that is the lateral projections from the first centrum in cyprinids, absent in catostomids, and absent in characiphysans (Fink and Fink, 1996)." [ZFIN:curator] +synonym: "basipophysis 1" EXACT [TAO:0001392] +synonym: "lateral process 1" EXACT [TAO:0001392] +xref: ZFA:0001392 +is_a: UBERON:0003109 ! parapophysis +is_a: UBERON:0011370 ! transverse process of atlas +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001393 +name: parapophysis 2 +namespace: uberon/phenoscape-anatomy +def: "Parapophysis that is lateral projection from the second centrum, absent in Siluriformes (Fink and Fink, 1996)." [ZFIN:curator] +synonym: "basipophysis" EXACT [TAO:0001393] +synonym: "lateral process 2" EXACT [TAO:0001393] +xref: ZFA:0001393 +is_a: UBERON:0003109 ! parapophysis +relationship: part_of UBERON:0001093 ! vertebral bone 2 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001394 +name: neural arch 3 +namespace: uberon/phenoscape-anatomy +def: "Neural arch 3 is expanded and fused to supraneural 3 as part of a neural complex roofing and protecting the neural canal." [ZFIN:curator] +xref: ZFA:0001394 +is_a: UBERON:0003861 ! neural arch +relationship: part_of UBERON:2001169 ! vertebral element 3 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001395 +name: neural arch 4 +namespace: uberon/phenoscape-anatomy +def: "Neural arch 4 is expanded and fused to supraneural 3 as part of the neural complex. A reduced neural spine projects from the posterior margin of the neural complex." [ZFIN:curator] +xref: ZFA:0001395 +is_a: UBERON:0003861 ! neural arch +relationship: part_of UBERON:2001170 ! vertebral element 4 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001396 +name: parapophysis + rib of vertebra 4 +namespace: uberon/phenoscape-anatomy +def: "The parapophysis + rib, fused to the centrum, extends laterally then angles anteroventrally. A thin plate, the os suspensorium fuses to its median surface." [ZFIN:curator] +synonym: "fourth pleural rib plus parapophysis" EXACT [TAO:0001396] +synonym: "fourth rib plus parapophysis" EXACT [TAO:0001396] +synonym: "parapophysis/rib" EXACT [TAO:0001396] +xref: ZFA:0001396 +is_a: UBERON:0002513 ! endochondral bone +relationship: part_of UBERON:2001170 ! vertebral element 4 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001397 +name: post-Weberian supraneural +namespace: uberon/phenoscape-anatomy +def: "Posterior to the Weberian apparatus, otophysan supraneurals form as median, unpaired, rod- or platelike elements, as in other actinopterygians." [ZFIN:curator] +xref: ZFA:0001397 +is_a: UBERON:2000442 ! supraneural bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001403 +name: supraethmoid +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that first appears as paired ossifications in the membrane (dermis) dorsolateral to the ethmoid cartilage and anterolateral to the lateral ethmoids, later having the appearance of one butterfly-shaped element. Fused to the anterodorsal margin of the mesethmoid. Bordered anteriorly by the kinethmoid and posteriorly by the frontal." [TAO:GA_TG] +xref: ZFA:0001403 +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0011164 ! neurocranium bone +relationship: part_of UBERON:0003112 ! olfactory region +relationship: part_of UBERON:0003113 ! dermatocranium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001404 +name: preethmoid bone +namespace: uberon/phenoscape-anatomy +def: "Small rounded to egg-shaped cartilage bone that sits in an anterolateral depression on the prevomer. Articulates with the autopalatine in all cypriniforms." [ZFIN:curator] +xref: ZFA:0001404 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011164 ! neurocranium bone +relationship: develops_from UBERON:0011242 ! ethmoid cartilage +relationship: part_of UBERON:0003112 ! olfactory region +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001406 +name: kinethmoid bone +namespace: uberon/phenoscape-anatomy +def: "Sesamoid bone located in the premaxillary-ethmoid ligament, between the mesethmoid and the premaxilla. The kinethmoid is an unpaired median bone." [TAO:GA_TG, ZFIN:curator] +comment: The kinethmoid is part of the protrusion mechanism of the upper jaw and is restricted to cypriniform fishes. +synonym: "kinethmoideum bone" EXACT [TAO:0001406] +xref: ZFA:0001406 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:0011597 ! bone of upper jaw +relationship: part_of UBERON:0003112 ! olfactory region +relationship: part_of UBERON:0003113 ! dermatocranium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001407 +name: infraorbital 2 +namespace: uberon/phenoscape-anatomy +def: "Infraorbital that is the second bone of the infraorbital series." [ZFIN:curator] +xref: ZFA:0001407 +is_a: UBERON:2000376 ! infraorbital +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001408 +name: infraorbital 3 +namespace: uberon/phenoscape-anatomy +def: "Infraorbital that is the third bone of the infraorbital series." [ZFIN:curator] +xref: ZFA:0001408 +is_a: UBERON:2000376 ! infraorbital +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001409 +name: infraorbital 4 +namespace: uberon/phenoscape-anatomy +def: "Infraorbital that is the fourth bone of the infraorbital series." [ZFIN:curator] +xref: ZFA:0001409 +is_a: UBERON:2000376 ! infraorbital +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001412 +name: epiotic +namespace: uberon/phenoscape-anatomy +alt_id: UBERON:2000659 +def: "Endochondral bone that borders that medial edge of the posttemporal fossa. The epiotics are sutured to parietals and supraoccipital dorsally, the exoccipitals ventrally and the pterotics laterally. The epiotic is a paired bone." [ZFIN:curator] +synonym: "epioccipital" EXACT [TAO:0001412] +synonym: "epioccipitals" EXACT PLURAL [TAO:0001412] +xref: ZFA:0001412 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011164 ! neurocranium bone +relationship: develops_from UBERON:0005410 ! cartilaginous otic capsule +relationship: overlaps UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0003110 ! otic region +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001415 +name: pelvic fin distal radial bone 2 +namespace: uberon/phenoscape-anatomy +def: "pelvic fin distal radial 2 element that is composed of bone tissue." [OBOL:automatic] +xref: ZFA:0001415 +is_a: UBERON:1500008 ! pelvic fin distal radial bone +is_a: UBERON:2101415 ! pelvic fin distal radial element 2 +intersection_of: UBERON:2101415 ! pelvic fin distal radial element 2 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2201415 ! pelvic fin distal radial cartilage 2 + +[Term] +id: UBERON:2001416 +name: pelvic fin distal radial bone 3 +namespace: uberon/phenoscape-anatomy +def: "pelvic fin distal radial 3 element that is composed of bone tissue." [OBOL:automatic] +xref: ZFA:0001416 +is_a: UBERON:1500008 ! pelvic fin distal radial bone +is_a: UBERON:2101416 ! pelvic fin distal radial element 3 +intersection_of: UBERON:2101416 ! pelvic fin distal radial element 3 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2201416 ! pelvic fin distal radial cartilage 3 + +[Term] +id: UBERON:2001417 +name: pelvic fin distal radial bone 1 +namespace: uberon/phenoscape-anatomy +def: "pelvic fin distal radial 1 element that is composed of bone tissue." [OBOL:automatic] +xref: ZFA:0001417 +is_a: UBERON:1500008 ! pelvic fin distal radial bone +is_a: UBERON:2101417 ! pelvic fin distal radial element 1 +intersection_of: UBERON:2101417 ! pelvic fin distal radial element 1 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2201417 ! pelvic fin distal radial cartilage 1 + +[Term] +id: UBERON:2001418 +name: obsolete dorsal fin lepidotrichium +namespace: uberon/phenoscape-anatomy +def: "Lepidotrichium which is part of the dorsal fin." [ZFIN:curator] +synonym: "dorsal fin lepidotrichia" EXACT PLURAL [TAO:0001418] +synonym: "dorsal fin ray" EXACT [TAO:0001418] +is_obsolete: true +replaced_by: UBERON:4000177 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001419 +name: dorsal fin pterygiophore +namespace: uberon/phenoscape-anatomy +def: "A range of seven to nine rod-like internal median skeletal support structures of the dorsal fin, comprised of both bone and cartilage and found between vertebrae 11 and 18." [ZFIN:curator] +synonym: "dorsal fin pterygiophores" EXACT PLURAL [TAO:0001419] +synonym: "dorsal fin support" EXACT [TAO:0001419] +xref: ZFA:0001419 +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:4000168 ! dorsal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001420 +name: anal fin pterygiophore +namespace: uberon/phenoscape-anatomy +def: "A range of twelve to fourteen rod-like internal median skeletal support structures of the anal fin, comprised of both bone and cartilage and found between vertebrae 14 and 21." [ZFIN:curator] +synonym: "anal fin pterygiophores" EXACT PLURAL [TAO:0001420] +xref: ZFA:0001420 +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:4000166 ! anal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001421 +name: obsolete anal fin lepidotrichium +namespace: uberon/phenoscape-anatomy +def: "Lepidotrichium which is part of the anal fin." [ZFIN:curator] +synonym: "anal fin lepidotrichia" EXACT PLURAL [TAO:0001421] +synonym: "anal fin ray" EXACT [TAO:0001421] +is_obsolete: true +replaced_by: UBERON:4000176 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001425 +name: basal plate cartilage +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001425 +is_a: UBERON:0003932 ! cartilage element of chondrocranium +relationship: overlaps UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0009635 ! parachordal cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001426 +name: posterior naris +namespace: uberon/phenoscape-anatomy +synonym: "posterior nostril" EXACT [TAO:0001426] +xref: ZFA:0001426 +is_a: UBERON:0005928 ! external naris +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001427 +name: anterior naris +namespace: uberon/phenoscape-anatomy +synonym: "anterior nostril" EXACT [TAO:0001427] +xref: ZFA:0001427 +is_a: UBERON:0005928 ! external naris +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001428 +name: olfactory rosette +namespace: uberon/phenoscape-anatomy +synonym: "nasal rosette" EXACT [TAO:0001428] +xref: ZFA:0001428 +is_a: UBERON:0019306 ! nose epithelium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001430 +name: pneumatic duct +namespace: uberon/phenoscape-anatomy +def: "A duct connecting the esophagus to the posterior chamber of the swim bladder. Finney et al, 2006." [ZFIN:curator] +xref: ZFA:0001430 +is_a: UBERON:0003928 ! digestive system duct +relationship: part_of UBERON:0001043 ! esophagus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001431 +name: primitive olfactory epithelium +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001431 +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium +relationship: part_of UBERON:0003050 ! olfactory placode +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001432 +name: anterior sclerotic bone +namespace: uberon/phenoscape-anatomy +def: "Sclerotic bone that is located anterior to the eye." [TAO:wd] +xref: ZFA:0001432 +is_a: UBERON:0010297 ! endochondral scleral ossicle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001433 +name: posterior sclerotic bone +namespace: uberon/phenoscape-anatomy +def: "Sclerotic bone that is located posterior to the eye." [TAO:wd] +xref: ZFA:0001433 +is_a: UBERON:0010297 ! endochondral scleral ossicle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001437 +name: ductus communicans +namespace: uberon/phenoscape-anatomy +def: "The constriction between the anterior and posterior chambers of the swim bladder. There does not appear to be an identifiable sphincter in the ductus, and therefore other musculature may regulate its opening. Finney et al, 2006." [ZFIN:curator] +xref: ZFA:0001437 +is_a: UBERON:0000058 ! duct +relationship: part_of UBERON:0006860 ! swim bladder +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001450 +name: apical ectodermal ridge pelvic fin +namespace: uberon/phenoscape-anatomy +def: "Apical ectodermal ridge that is part of the pelvic fin." [ZFIN:curator] +xref: ZFA:0001450 +is_a: UBERON:0004356 ! apical ectodermal ridge +relationship: develops_from UBERON:0005422 ! pelvic appendage apical ectodermal ridge +relationship: part_of UBERON:0000152 ! pelvic fin +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001456 +name: pectoral fin endoskeletal disc +namespace: uberon/phenoscape-anatomy +def: "A plate-like chondrogenic condensation within the pectoral fin, which subdivides into individual radials by decomposition of extracellular matrix in the inter-radial mesenchyme (Grandel and Schulte-Merker, 1998)." [ZFIN:curator] +synonym: "fin plate cartilage" EXACT [TAO:0001456] +xref: ZFA:0001456 +is_a: UBERON:0007390 ! pectoral appendage cartilage tissue +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001457 +name: postcranial axial cartilage +namespace: uberon/phenoscape-anatomy +def: "Cartilage which is part of the axial skeleton." [ZFIN:curator] +xref: ZFA:0001457 +is_a: UBERON:0007844 ! cartilage element +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0002090 ! postcranial axial skeleton +relationship: part_of UBERON:0002090 ! postcranial axial skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001462 +name: obsolete somite border +namespace: uberon/phenoscape-anatomy +synonym: "somite border cell" EXACT PLURAL [TAO:0001462] +xref: ZFA:0001462 +is_obsolete: true +replaced_by: UBERON:0015178 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001463 +name: melanophore stripe +namespace: uberon/phenoscape-anatomy +synonym: "bar" EXACT [] +synonym: "melanophore bar" EXACT [] +synonym: "stripe" EXACT [TAO:0001463] +synonym: "stripes" EXACT PLURAL [TAO:0001463] +xref: ZFA:0001463 +is_a: UBERON:2002284 ! body marking +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001467 +name: pharyngeal mesoderm +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001467 +is_a: UBERON:0000926 ! mesoderm +relationship: part_of UBERON:0001042 ! chordate pharynx +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001468 +name: anterior lateral line system +def: "The anterior lateral line system develops from cranial ectodermal placodes, situated between the eye and the ear, that give rise to both the neuromasts and the anterior lateral line sensory nerves that innervate the neuromasts. The anterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians and are innervated by several lateral line nerves, which project to the hindbrain. The anterior lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance." [ZFIN:curator] +subset: efo_slim +xref: EFO:0003691 +xref: TAO:0001468 +xref: ZFA:0001468 +is_a: UBERON:0002540 ! lateral line system +disjoint_from: UBERON:2001471 {source="lexical"} ! posterior lateral line system + +[Term] +id: UBERON:2001470 +name: anterior lateral line +def: "The anterior lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The anterior lateral line develops from cranial ectodermal placodes situated between the eye and ear." [ZFIN:curator] +xref: TAO:0001470 +xref: ZFA:0001470 +is_a: UBERON:0010202 ! lateral line +intersection_of: UBERON:0010202 ! lateral line +intersection_of: part_of UBERON:2001468 ! anterior lateral line system +relationship: develops_from UBERON:2005117 ! anterior lateral line primordium +relationship: part_of UBERON:2001468 ! anterior lateral line system + +[Term] +id: UBERON:2001471 +name: posterior lateral line system +namespace: uberon/phenoscape-anatomy +def: "The posterior lateral line system develops from cranial ectodermal placodes, situated behind the ear, that give rise to both the neuromasts and the posterior lateral line sensory nerves that innervate the neuromasts. The posterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The neuromasts are innervated by several lateral line nerves, which project primarily to the hindbrain. The posterior mechanosensory lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance." [ZFIN:curator] +xref: ZFA:0001471 +is_a: UBERON:0002540 ! lateral line system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001472 +name: anterior lateral line neuromast +namespace: uberon/phenoscape-anatomy +def: "Neuromast that is part of the anterior lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] +synonym: "neuromast anterior" EXACT [TAO:0001472] +xref: ZFA:0001472 +is_a: UBERON:0008904 ! neuromast +relationship: part_of UBERON:2001470 ! anterior lateral line +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001473 +name: obsolete deep blastomere +namespace: uberon/phenoscape-anatomy +def: "Cells (completely cleaved), located underneath the superficial blastomeres and internal to the marginal blastomeres. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001473 +is_obsolete: true +replaced_by: ZFA:0001473 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001474 +name: sublingual dorsal and ventral separate +namespace: uberon/phenoscape-anatomy +def: "Anatomical cluster consisting of the paired sublingual dorsal ossification and sublingual ventral ossification." [TAO:wd] +is_a: UBERON:0000477 ! anatomical cluster +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001475 +name: sublingual dorsal ossification +namespace: uberon/phenoscape-anatomy +def: "Sublingual that is the dorsal element paired with the sublingual ventral ossification." [TAO:wd] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:2001275 ! sublingual +relationship: develops_from UBERON:2001532 ! sublingual dorsal cartilage +relationship: part_of UBERON:2001474 ! sublingual dorsal and ventral separate +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001476 +name: sublingual ventral ossification +namespace: uberon/phenoscape-anatomy +def: "Sublingual that is the ventral element paired with the sublingual dorsal ossification." [TAO:wd] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:2001275 ! sublingual +relationship: develops_from UBERON:2001545 ! sublingual ventral cartilage +relationship: part_of UBERON:2001474 ! sublingual dorsal and ventral separate +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001480 +name: dorsal anterior lateral line nerve +namespace: uberon/phenoscape-anatomy +def: "Nerve fibers originating from the dorsal anterior lateral line ganglion. These rami innervate the otic, supraorbital, and infraorbital neuromasts." [ZFIN:curator] +xref: ZFA:0001480 +is_a: UBERON:0008906 ! lateral line nerve +relationship: part_of UBERON:2000425 ! anterior lateral line nerve +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001481 +name: ventral anterior lateral line nerve +namespace: uberon/phenoscape-anatomy +def: "Nerve fibers originating from the ventral anterior lateral line ganglion. These rami innervate the mandibular and opercular neuromasts." [ZFIN:curator] +xref: ZFA:0001481 +is_a: UBERON:0008906 ! lateral line nerve +relationship: part_of UBERON:2000425 ! anterior lateral line nerve +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001482 +name: middle lateral line nerve +namespace: uberon/phenoscape-anatomy +def: "Nerve fibers originating from the middle lateral line ganglion. These fibers innervate the middle lateral line." [ZFIN:curator] +xref: ZFA:0001482 +is_a: UBERON:0008906 ! lateral line nerve +relationship: part_of UBERON:2000175 ! posterior lateral line nerve +relationship: part_of UBERON:2005114 ! middle lateral line system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001483 +name: middle lateral line ganglion +namespace: uberon/phenoscape-anatomy +def: "The middle lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the middle lateral line." [ZFIN:curator] +xref: ZFA:0001483 +is_a: UBERON:2000120 ! lateral line ganglion +relationship: part_of UBERON:2005114 ! middle lateral line system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001484 +name: obsolete superficial blastomere +namespace: uberon/phenoscape-anatomy +def: "Cells (completely cleaved), located at the surface of the blastodisc, above the deep blastomeres. Kimmel et al, 1995." [ZFIN:curator] +xref: ZFA:0001484 +is_obsolete: true +replaced_by: ZFA:0001484 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001502 +name: epiphyseal bar +namespace: uberon/phenoscape-anatomy +def: "Bilaterally paired medial bar of cartilage formed at midorbit through medial chondrification from triangles of cartilage that later form the junction of the taeniae marginales anterior, taeniae marginales posterior and the epiphyseal bar." [ZFIN:curator] +xref: ZFA:0001502 +is_a: UBERON:0003932 ! cartilage element of chondrocranium +relationship: overlaps UBERON:0001703 ! neurocranium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001504 +name: occipital arch cartilage +namespace: uberon/phenoscape-anatomy +def: "Cranial cartilage which is a paired anterodorsal projection of the posterior end of the parachordal cartilage. It lies lateral to the notochord, just anterior to the posterior tip of the otic capsule. The bilaterally paired occipital arch cartilages fuse anterodorsally to the posterior edges of the auditory capsules and meet medially as the tectum synoticum (by 12 dpf)." [ZFIN:curator] +xref: ZFA:0001504 +is_a: UBERON:0003932 ! cartilage element of chondrocranium +relationship: overlaps UBERON:0001703 ! neurocranium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001505 +name: taenia marginalis anterior +namespace: uberon/phenoscape-anatomy +def: "Cartilage bar (bilaterally paired) that grows anteroventrally from the epiphyseal bar to join the anterolatera1 edge of the ethmoid plate." [ZFIN:curator] +synonym: "orbital cartilage" RELATED [TAO:0001505] +xref: ZFA:0001505 +is_a: UBERON:0003932 ! cartilage element of chondrocranium +relationship: overlaps UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0003111 ! sphenoid region +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001508 +name: trabecula communis +namespace: uberon/phenoscape-anatomy +def: "Cartilage formed via medial fusion between bilaterally paired trabecula crani." [ZFIN:curator] +xref: ZFA:0001508 +is_a: UBERON:0003932 ! cartilage element of chondrocranium +relationship: overlaps UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0005945 ! neurocranial trabecula +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001511 +name: interhyal cartilage +namespace: uberon/phenoscape-anatomy +alt_id: UBERON:2000218 +def: "Pharyngeal arch cartilage that is bilaterally paired and articulates dorsally with the hyosymplectic cartilage or the articulation of the hyomandibula and symplectic." [ZFIN:curator] +comment: It articulates ventrally with the posterior end of the ceratohyal cartilage or the posterior ceratohyal. +synonym: "stylohyal cartilage" EXACT [TAO:0001511] +xref: ZFA:0001511 +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:2001892 ! interhyal element +relationship: overlaps UBERON:2001841 ! interhyal-epihyal joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001515 +name: taenia marginalis posterior +namespace: uberon/phenoscape-anatomy +def: "Cartilage bar (bilaterally paired) that is first visible as an anterior extension of the auditory capsule. It grows anteriorly toward the middle of the orbit where it is connected to its mate on the other side by the epiphyseal bar." [ZFIN:curator] +synonym: "orbital cartilage" RELATED [TAO:0001515] +xref: ZFA:0001515 +is_a: UBERON:0003932 ! cartilage element of chondrocranium +relationship: overlaps UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0003111 ! sphenoid region +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001516 +name: ceratobranchial cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal arch cartilage that forms the largest skeletal element of the ventral branchial arches." [ZFIN:curator] +xref: ZFA:0001516 +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:2001898 ! ceratobranchial element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001517 +name: ceratobranchial 2 cartilage +namespace: uberon/phenoscape-anatomy +def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone." [ZFIN:curator] +xref: ZFA:0001517 +is_a: UBERON:2001516 ! ceratobranchial cartilage +is_a: UBERON:2001900 ! ceratobranchial 2 element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001518 +name: ceratobranchial 3 cartilage +namespace: uberon/phenoscape-anatomy +def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone." [ZFIN:curator] +xref: ZFA:0001518 +is_a: UBERON:2001516 ! ceratobranchial cartilage +is_a: UBERON:2001901 ! ceratobranchial 3 element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001519 +name: ceratobranchial 4 cartilage +namespace: uberon/phenoscape-anatomy +def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone." [ZFIN:curator] +xref: ZFA:0001519 +is_a: UBERON:2001516 ! ceratobranchial cartilage +is_a: UBERON:2001902 ! ceratobranchial 4 element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001520 +name: ceratobranchial 1 cartilage +namespace: uberon/phenoscape-anatomy +def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 1 cartilage or bone." [ZFIN:curator] +xref: ZFA:0001520 +is_a: UBERON:2001516 ! ceratobranchial cartilage +is_a: UBERON:2001899 ! ceratobranchial 1 element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001521 +name: ceratobranchial 5 cartilage +namespace: uberon/phenoscape-anatomy +def: "Ceratobranchial cartilage that is the most posterior, bilaterally paired ventral pharyngeal arch cartilage." [ZFIN:curator] +xref: ZFA:0001521 +is_a: UBERON:2001516 ! ceratobranchial cartilage +is_a: UBERON:2001903 ! ceratobranchial 5 element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001522 +name: hypobranchial cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal arch cartilage that is bilaterally paired and articulates medially with a median skeletal element and laterally with a ceratobranchial cartilage or bone." [ZFIN:curator] +comment: The hypobranchial cartilage usually articulates medially with a basibranchial bone or cartilage. +xref: ZFA:0001522 +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:2001893 ! hypobranchial element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001523 +name: hypobranchial 4 cartilage +namespace: uberon/phenoscape-anatomy +def: "Hypobranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone." [ZFIN:curator] +xref: ZFA:0001523 +is_a: UBERON:2001522 ! hypobranchial cartilage +is_a: UBERON:2001897 ! hypobranchial 4 element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001524 +name: hypobranchial 1 cartilage +namespace: uberon/phenoscape-anatomy +def: "Hypobranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone." [ZFIN:curator] +xref: ZFA:0001524 +is_a: UBERON:2001522 ! hypobranchial cartilage +is_a: UBERON:2001894 ! hypobranchial 1 element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001525 +name: hypobranchial 2 cartilage +namespace: uberon/phenoscape-anatomy +def: "Hypobranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone." [ZFIN:curator] +xref: ZFA:0001525 +is_a: UBERON:2001522 ! hypobranchial cartilage +is_a: UBERON:2001895 ! hypobranchial 2 element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001526 +name: hypobranchial 3 cartilage +namespace: uberon/phenoscape-anatomy +def: "Hypobranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone." [ZFIN:curator] +xref: ZFA:0001526 +is_a: UBERON:2001522 ! hypobranchial cartilage +is_a: UBERON:2001896 ! hypobranchial 3 element +relationship: overlaps UBERON:2001863 ! inter-hypobranchial 3 joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001527 +name: epibranchial cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal arch cartilage that is bilaterally paired and articulates laterally with ceratobranchial cartilage or bone." [TAO:wd] +xref: ZFA:0001527 +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:2001904 ! epibranchial element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001528 +name: epibranchial 1 cartilage +namespace: uberon/phenoscape-anatomy +def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone." [ZFIN:curator] +xref: ZFA:0001528 +is_a: UBERON:2001527 ! epibranchial cartilage +is_a: UBERON:2001905 ! epibranchial 1 element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001529 +name: epibranchial 3 cartilage +namespace: uberon/phenoscape-anatomy +def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone." [ZFIN:curator] +xref: ZFA:0001529 +is_a: UBERON:2001527 ! epibranchial cartilage +is_a: UBERON:2001907 ! epibranchial 3 element +relationship: overlaps UBERON:2001861 ! epibranchial 3-pharyngobranchial 3 joint +relationship: overlaps UBERON:2001862 ! epibranchial 3-pharyngobranchial 4 joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001530 +name: epibranchial 2 cartilage +namespace: uberon/phenoscape-anatomy +def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone." [ZFIN:curator] +xref: ZFA:0001530 +is_a: UBERON:2001527 ! epibranchial cartilage +is_a: UBERON:2001906 ! epibranchial 2 element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001531 +name: epibranchial 4 cartilage +namespace: uberon/phenoscape-anatomy +def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone." [ZFIN:curator] +xref: ZFA:0001531 +is_a: UBERON:2001527 ! epibranchial cartilage +is_a: UBERON:2001908 ! epibranchial 4 element +relationship: overlaps UBERON:2001860 ! epibranchial 4-upper pharyngeal toothplate joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001532 +name: sublingual dorsal cartilage +namespace: uberon/phenoscape-anatomy +def: "Sublingual cartilage that is the dorsal element paired with the sublingual ventral cartilage." [TAO:wd] +is_a: UBERON:2001544 ! sublingual cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001533 +name: pharyngobranchial cartilage +namespace: uberon/phenoscape-anatomy +def: "Paired cartilages that project medially from the medial tips of epibranchials." [ZFIN:curator] +synonym: "infrapharyngobranchial cartilage" EXACT [] +xref: ZFA:0001533 +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:2001909 ! pharyngobranchial element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001534 +name: pharyngobranchial 3 cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngobranchial cartilage, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 2 element." [ZFIN:curator] +xref: ZFA:0001534 +is_a: UBERON:2001533 ! pharyngobranchial cartilage +is_a: UBERON:2001912 ! pharyngobranchial 3 element +relationship: overlaps UBERON:2001861 ! epibranchial 3-pharyngobranchial 3 joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001535 +name: median fin cartilage +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001535 +is_a: UBERON:2001457 ! postcranial axial cartilage +relationship: part_of UBERON:4000170 ! median fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001536 +name: pharyngobranchial 2 cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngobranchial cartilage, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 1 element." [ZFIN:curator] +xref: ZFA:0001536 +is_a: UBERON:2001533 ! pharyngobranchial cartilage +is_a: UBERON:2001911 ! pharyngobranchial 2 element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001537 +name: mesocoracoid cartilage +namespace: uberon/phenoscape-anatomy +def: "Pectoral fin cartilage that is part of the embryonic primary pectoral girdle from which the mesocoracoid bone will ossify endochondrally." [TAO:GA_TG, ZFIN:curator] +synonym: "mesocoracoideum" RELATED [TAO:0001537] +xref: ZFA:0001537 +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:4300092 ! mesocoracoid element +intersection_of: UBERON:4300092 ! mesocoracoid element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001538 +name: pelvic radial cartilage +namespace: uberon/phenoscape-anatomy +def: "Small cartilage that forms at the posterior edge of the basipterygium." [ZFIN:curator] +comment: TO DO: reconcile cartilage elements of fin with bony elements (e.g. develops from and labeling). +synonym: "pelvic fin radial cartilage" EXACT [] +xref: ZFA:0001538 +is_a: UBERON:0007844 ! cartilage element +relationship: part_of UBERON:0000152 ! pelvic fin +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001539 +name: basipterygium cartilage +namespace: uberon/phenoscape-anatomy +def: "Bilaterally paired small, rodlike cartilages on the ventral surface of the abdomen (present at 7.9 mm). Their posterior tips expand laterally, forming L-shaped cartilages. Medially, a posterior spur of cartilage develops, which will later ossify as the ischiac process (Weitzman 1962)." [ZFIN:curator] +xref: ZFA:0001539 +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:2100623 ! basipterygium element +intersection_of: UBERON:2100623 ! basipterygium element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001540 +name: pelvic radial 3 cartilage +namespace: uberon/phenoscape-anatomy +def: "Small cartilage that forms at the posterior and medial edge of the basipterygium." [ZFIN:curator] +xref: ZFA:0001540 +is_a: UBERON:2001538 ! pelvic radial cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001541 +name: pelvic radial 2 cartilage +namespace: uberon/phenoscape-anatomy +def: "Small cartilage with a long posterior process and a shorter lateral one that forms at the posterior edge of the basipterygium, between radial cartilages 1 and 2." [ZFIN:curator] +xref: ZFA:0001541 +is_a: UBERON:2001538 ! pelvic radial cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001542 +name: pelvic radial 1 cartilage +namespace: uberon/phenoscape-anatomy +def: "Small cartilage that forms at the posterior and lateral edge of the basipterygium." [ZFIN:curator] +xref: ZFA:0001542 +is_a: UBERON:2001538 ! pelvic radial cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001544 +name: sublingual cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal arch cartilage that is the median cartilage of the ventral hyoid arch, generally lying between the paired ventral hypohyals." [TAO:wd] +is_a: UBERON:0011004 ! pharyngeal arch cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001545 +name: sublingual ventral cartilage +namespace: uberon/phenoscape-anatomy +def: "Sublingual cartilage that is the ventral element paired with the sublingual dorsal cartilage." [TAO:wd] +is_a: UBERON:2001544 ! sublingual cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001546 +name: neural spine 4 +namespace: uberon/phenoscape-anatomy +def: "Neural spine that is associated with the fourth vertebra." [TAO:wd] +xref: ZFA:0001600 +is_a: UBERON:0001076 ! neural spine +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001547 +name: abdominal scute +namespace: uberon/phenoscape-anatomy +def: "Scute that is a bony plate that forms in the midline of ventral body margin between pectoral girdle and anal fin. Abdominal scutes may be present both anterior to and posterior to the pelvic girdle and fin." [TAO:wd] +is_a: UBERON:2002294 ! fish scute +relationship: part_of UBERON:0002090 ! postcranial axial skeleton +relationship: part_of UBERON:2001254 ! abdominal scute series +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001548 +name: intercalarium ascending process +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001602 +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2000525 ! intercalarium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001550 +name: obsolete caudal fin lepidotrichium +namespace: uberon/phenoscape-anatomy +def: "Lepidotrichium which is part of the caudal fin." [ZFIN:curator] +synonym: "caudal fin ray" EXACT [TAO:0001550] +is_obsolete: true +replaced_by: UBERON:4000174 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001551 +name: obsolete pectoral fin lepidotrichium +namespace: uberon/phenoscape-anatomy +def: "Lepidotrichium which is part of the pectoral fin, forming the pectoral fin skeleton and articulating with the pectoral radials. A pectoral lepidotrichium is composed of two hemitrichia that surround bundles of actinotrichia distally." [TAO:GA_TG, ZFIN:curator] +comment: Each pectoral lepidotrichium may be unsegmented (e.g., spine), segmented but unbranched (e.g., leading ray) or segmented and branched. Definition of lepidotrichium by Schultze and Arratia (1989: 217). For additional information about lepidotrichia see Arratia et al. 2001 and Arratia 2008. +synonym: "pectoral fin lepidotrichia" EXACT PLURAL [TAO:0001551] +synonym: "pectoral fin ray" EXACT [TAO:0001551] +is_obsolete: true +replaced_by: UBERON:4000175 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001552 +name: obsolete pelvic fin lepidotrichium +namespace: uberon/phenoscape-anatomy +def: "Lepidotrichium which is part of the pelvic fin." [ZFIN:curator] +synonym: "pelvic fin lepidotrichia" EXACT PLURAL [TAO:0001552] +synonym: "pelvic fin ray" EXACT [TAO:0001552] +is_obsolete: true +replaced_by: UBERON:4000173 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001553 +name: manubrium +namespace: uberon/phenoscape-anatomy +synonym: "intercalarium anterior process" EXACT [TAO:Bird and Mabee 2003] +synonym: "intercalarium horizontal process" EXACT [TAO:Fink and Fink 1981] +synonym: "manubrium incudus" EXACT [TAO:Bird 2003] +xref: ZFA:0001601 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:2000461 ! Weberian ossicle +relationship: part_of UBERON:2000525 ! intercalarium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001554 +name: obsolete lepidotrichium +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that is rod-like, formed and usually contained in a fin membrane, and jointed to or adjacent to distal radials. Lepidotrichia are formed from paired hemitrichia surrounding actinotrichia. There are usually two more lepidotrichia than distal radials." [ZFIN:curator] +synonym: "fin ray" EXACT [TAO:0001554] +is_obsolete: true +replaced_by: UBERON:4000172 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001560 +name: hypural 1 +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001560 +is_a: UBERON:2000364 ! hypural +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001561 +name: hypural 2 +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001561 +is_a: UBERON:2000364 ! hypural +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001562 +name: hypural 3 +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001562 +is_a: UBERON:2000364 ! hypural +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001563 +name: hypural 4 +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001563 +is_a: UBERON:2000364 ! hypural +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001564 +name: hypural 5 +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001564 +is_a: UBERON:2000364 ! hypural +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001565 +name: obsolete oocyte stage II +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001565 +is_obsolete: true +consider: CL:0000023 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001566 +name: obsolete oocyte stage III +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001566 +is_obsolete: true +consider: CL:0000023 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001567 +name: obsolete oocyte stage I +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001567 +is_obsolete: true +consider: CL:0000023 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001568 +name: obsolete oocyte stage IV +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001568 +is_obsolete: true +consider: CL:0000023 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001569 +name: obsolete oocyte stage V +namespace: uberon/phenoscape-anatomy +synonym: "mature egg" EXACT [TAO:0001569] +synonym: "unactivated egg" EXACT [TAO:0001569] +xref: ZFA:0001569 +is_obsolete: true +consider: CL:0000023 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001570 +name: obsolete unfertilized egg +namespace: uberon/phenoscape-anatomy +synonym: "activated oocyte" EXACT [TAO:0001570] +xref: ZFA:0001570 +is_obsolete: true +replaced_by: CL:0000025 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001571 +name: postovulatory follicle +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001571 +is_a: UBERON:0001305 ! ovarian follicle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001577 +name: premaxilla ascending process +namespace: uberon/phenoscape-anatomy +def: "Process of the premaxilla that extends posteriorly and overlays the mesethmoid." [ZFIN:curator] +xref: ZFA:0001577 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002244 ! premaxilla +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001578 +name: anterior dorsomedial process of autopalatine +namespace: uberon/phenoscape-anatomy +def: "In cypriniforms the anterior portion of the palatine has a dorsomedial process which abuts against the mesethmoid. Such a process is not present in other ostariophysans or in other primitive teleosts." [ZFIN:curator] +xref: ZFA:0001578 +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:2000620 ! autopalatine +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001579 +name: ural vertebra 2 +namespace: uberon/phenoscape-anatomy +def: "Ural vertebra that is the second vertebra posterior to preural centrum 1. It may bear a rudimentary neural arch and sometimes a rudimentary spine or the neural arch and spine are completely absent and it may articulate or fuse with hypural 2 (polyural terminology). Ural vertebra 2 is an unpaired median bone." [TAO:GA_TG] +comment: Ural vertebrae 2 may be defined also as the second ural vertebrae bearing hypurals 3 or 3 and 4 or 3 plus more dorsal hypurals (diural terminology). +xref: ZFA:0001579 +is_a: UBERON:2002162 ! ural vertebra +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001581 +name: ural centrum 2 +namespace: uberon/phenoscape-anatomy +def: "A vertebral centrum that is located immediately posterior to ural centrum 1. Ural centrum 2 is an unpaired median bone." [TAO:GA_TG] +comment: Ural centrum 2 (polyural terminology) may articulate or fuse with its neural arch dorsally or the neural arch may be absent, and with hypural 2 ventrally. Ural centrum 2 may be defined also as the second ural centrum bearing hypurals 3 or 3 and 4 or 3, 4 and more dorsal hypurals (diural terminology). +xref: ZFA:0001581 +is_a: UBERON:0004247 ! bone of dorsum +is_a: UBERON:2002085 ! ural centrum +relationship: part_of UBERON:2001579 ! ural vertebra 2 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001582 +name: non-Weberian precaudal vertebra +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001582 +is_a: UBERON:4300223 ! precaudal vertebra +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001583 +name: preural centrum 1+ ural centrum 1 +namespace: uberon/phenoscape-anatomy +def: "Urostyle that is the result of fusion of preural centrum 1 with the first ural centrum (of polyural terminology)." [TAO:GA_TG] +xref: ZFA:0001583 +is_a: UBERON:0003106 ! urostyle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001584 +name: caudal procurrent ray +namespace: uberon/phenoscape-anatomy +def: "Caudal fin lepidotrichium that form part of the anterior dorsal and ventral series of lepidotrichia of the caudal fin that may be associated with a neural spine or an epural or an uroneural (dorsal series) and with a haemal spine of a preural vertebra (ventral series). Caudal procurrent rays are shorter than the caudal principal rays. A caudal procurrent ray is an unpaired median bone." [TAO:Arratia_2008, TAO:GA_TG] +synonym: "caudal precurrent ray" EXACT [TAO:0001584] +synonym: "caudal procurrent lepidotrichium" EXACT [TAO:0001584] +synonym: "caudal spiny ray" EXACT [TAO:0001584] +synonym: "rudimentary ray" EXACT [TAO:0001584] +xref: ZFA:0001584 +is_a: UBERON:4000174 ! caudal fin lepidotrichium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001585 +name: caudal principal ray +namespace: uberon/phenoscape-anatomy +def: "Caudal fin lepidotrichium that is adjacent to a branched ray. Caudal principal rays may be segmented but unbranched and the main element forming the dorsal or ventral leading margin of the caudal fin or a ray that may be only segmented-and-branched and forms part of the middle-posterior region of the fin. A caudal principal ray is an unpaired median bone." [TAO:GA_TG, TAO:wd] +comment: Counts of caudal principal rays are taken as the number of branched rays plus two adjacent unbranched rays and counts are typically reported as, for example: 1,8,7,1 (1 unbranched and 8 branched upper rays, 7 branched and 1 unbranched lower rays). A caudal principal caudal ray may be associated with one or more hypurals or with hemal spines of preural centra 1 and 2 (Schultze and Arratia, 1989; Arratia, 2008). In basal teleosts the number of caudal principal rays is about 20. A decreasing of the number of the branched-and segmented rays is observed in more advanced teleosts (see Schultze and Arratia, 1989; Arratia, 1991, 2008). +synonym: "caudal fin principal ray" EXACT [TAO:0001585] +synonym: "caudal principal lepidotrichium" EXACT [TAO:0001585] +xref: ZFA:0001585 +is_a: UBERON:4000174 ! caudal fin lepidotrichium +relationship: part_of UBERON:2002164 ! caudal principal ray set +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001586 +name: pectoral fin radial bone +namespace: uberon/phenoscape-anatomy +def: "pectoral fin radial element that is composed of bone tissue." [OBOL:automatic] +comment: There are two paired series of pectoral radials, the proximal and the distal ones that may have variable shapes and sizes. +synonym: "pectoral actinost" EXACT [TAO:0001586] +xref: ZFA:0001586 +is_a: UBERON:0010741 ! bone of pectoral complex +is_a: UBERON:1500006 ! paired fin radial bone +is_a: UBERON:2101586 ! pectoral fin radial element +intersection_of: UBERON:2101586 ! pectoral fin radial element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2201586 ! pectoral fin radial cartilage + +[Term] +id: UBERON:2001587 +name: pectoral fin proximal radial bone +namespace: uberon/phenoscape-anatomy +def: "pectoral fin proximal radial element that is composed of bone tissue." [OBOL:automatic] +comment: Two to four flat or slightly rod-like proximal pectoral radials, bilaterally, can be found in teleosts. Pectoral proximal radials are commonly hour-glass or rectangular shaped. The presence of four pectoral proximal radials is interpreted as a synapomorphy of teleosts (Patterson 1977, Arratia 1999). +synonym: "pectoral actinost" RELATED [] +xref: ZFA:0001587 +is_a: UBERON:2001586 ! pectoral fin radial bone +is_a: UBERON:2101587 ! pectoral fin proximal radial element +intersection_of: UBERON:2101587 ! pectoral fin proximal radial element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2201587 ! pectoral fin proximal radial cartilage + +[Term] +id: UBERON:2001588 +name: pectoral fin distal radial bone +namespace: uberon/phenoscape-anatomy +def: "pectoral fin distal radial element that is composed of bone tissue." [OBOL:automatic] +comment: A variable number of pectoral distal radials may be present in each pectoral fin. They are commonly small elements, rod-like, round or square shaped. +xref: ZFA:0001588 +is_a: UBERON:2001586 ! pectoral fin radial bone +is_a: UBERON:2101588 ! pectoral fin distal radial element +intersection_of: UBERON:2101588 ! pectoral fin distal radial element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2201588 ! pectoral fin distal radial cartilage + +[Term] +id: UBERON:2001589 +name: propterygium cartilage +namespace: uberon/phenoscape-anatomy +def: "The propterygium is the lateralmost or anteriormost basal cartilage that originates from the pectoral fin endoskeletal disc. The bases of the pectoral lepidotrichium 1 plus the propterygium articulates with the scapula." [TAO:GA_TG] +comment: The cartilaginous propterygium may partially ossify and fuse to the base of the pectoral hemilepidotrichium 1 in teleosts, but remains as a separate element in non-teleostean fishes. +synonym: "pectoral propterygium" EXACT [TAO:0001589] +xref: ZFA:0001589 +is_a: UBERON:2201587 ! pectoral fin proximal radial cartilage +is_a: UBERON:4300083 ! propterygium element +intersection_of: UBERON:4300083 ! propterygium element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001592 +name: claustrum bone +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone, membrane bone, and Weberian ossicle that is located dorsal to the scaphium. The claustrum bone is bilaterally paired." [ZFIN:curator] +synonym: "first Weberian ossicle" EXACT [TAO:0001592] +xref: ZFA:0001592 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:4300190 ! claustrum element +intersection_of: UBERON:4300190 ! claustrum element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2000637 ! claustrum cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001593 +name: caudal fin upper lobe +namespace: uberon/phenoscape-anatomy +def: "Surface structure that is the dorsal portion of the caudal fin." [TAO:wd] +synonym: "caudal fin dorsal lobe" EXACT [TAO:0001593] +xref: ZFA:0001604 +is_a: UBERON:0003102 ! surface structure +relationship: part_of UBERON:4000164 ! caudal fin +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001594 +name: caudal fin lower lobe +namespace: uberon/phenoscape-anatomy +def: "Surface structure that is the ventral portion of the caudal fin." [TAO:wd] +synonym: "caudal fin ventral lobe" EXACT [TAO:0001594] +xref: ZFA:0001605 +is_a: UBERON:0003102 ! surface structure +relationship: part_of UBERON:4000164 ! caudal fin +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001603 +name: maxilla ascending process +namespace: uberon/phenoscape-anatomy +def: "Process that is the upper portion of the maxilla that rests on the posterior surface of the lateral portion of the premaxilla." [TAO:wd] +comment: Synonyms maxilla ascending arm used in Zanata and Vari 2005, and maxilla upper arm used in Weitzman 1962 +synonym: "maxilla ascending arm" EXACT [TAO:0001603] +synonym: "maxilla upper arm" EXACT [TAO:0001603] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002397 ! maxilla +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001604 +name: lateral ethmoid palatine process +namespace: uberon/phenoscape-anatomy +def: "Lateral bony projection proximal to lateral ethmoid-palatine joint, and located anterior to orbital region and posterior to olfactory region." [TAO:wd] +synonym: "antorbital process" RELATED [TAO:0001604] +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:2000226 ! lateral ethmoid bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001605 +name: caudal scute series +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000477 ! anatomical cluster +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001606 +name: caudal scute +namespace: uberon/phenoscape-anatomy +def: "Scute that is a median bony plate forming anterior to procurrent caudal fin rays." [TAO:wd] +is_a: UBERON:2002294 ! fish scute +relationship: part_of UBERON:0002090 ! postcranial axial skeleton +relationship: part_of UBERON:2001605 ! caudal scute series +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001607 +name: basipterygoid process of parasphenoid +namespace: uberon/phenoscape-anatomy +def: "Process that is the paired process of the parasphenoid that articulates with the suspensorium." [TAO:wd] +synonym: "basipterygoid process" EXACT [TAO:0001607] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004745 ! parasphenoid +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001608 +name: autopalatine-lateral ethmoid joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the autopalatine and lateral ethmoid and bones. Autopalatine-lateral ethmoid joint is paired." [TAO:wd] +xref: ZFA:0005420 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:2000226 ! lateral ethmoid bone +intersection_of: connects UBERON:2000620 ! autopalatine +relationship: connects UBERON:2000226 ! lateral ethmoid bone +relationship: connects UBERON:2000620 ! autopalatine +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001609 +name: pharyngobranchial 2 bone uncinate process +namespace: uberon/phenoscape-anatomy +def: "Bony projection that is part of the pharyngobranchial 2 bone." [TAO:wd] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2001250 ! pharyngobranchial 2 bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001610 +name: quadrate dorsal process +namespace: uberon/phenoscape-anatomy +def: "An endochondral bone that is the dorsally-oriented bony extension of the quadrate, extending from the anterior portion of the bone." [TAO:wd] +comment: Term from Weitzman, 1962 and Sidlauskas and Vari, 2008. +synonym: "quadrate superior arm" EXACT [TAO:0001610] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0006597 ! quadrate bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001611 +name: quadrate posterodorsal process +namespace: uberon/phenoscape-anatomy +def: "Process that is the posterior extension of the quadrate and located dorsal to the quadrate ventral process." [TAO:wd] +comment: Term from Weitzman, 1962 and Sidlauskas and Vari, 2008. +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0006597 ! quadrate bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001612 +name: sensory canal +namespace: uberon/phenoscape-anatomy +def: "Multi-tissue structure that is a fluid-filled canal in the integument and usually dermal bones, and contains one or more neuromast organs." [TAO:wd] +comment: Sensory canals usually communicate with the environment via pores in the sensory canal or at the distal ends of tubules, which extend from canal where pores would otherwise be. +synonym: "lateral line canal" EXACT [TAO:0001612] +synonym: "lateral-line canal" EXACT [TAO:0001612] +xref: ZFA:0005443 +is_a: UBERON:0000481 ! multi-tissue structure +relationship: part_of UBERON:0002540 ! lateral line system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001613 +name: dorsal fin middle radial bone +namespace: uberon/phenoscape-anatomy +def: "dorsal fin middle radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +comment: Synonym dorsal fin medial radial from Weitzman, 1962. +synonym: "dorsal fin medial radial" EXACT [TAO:0001613] +is_a: UBERON:2001672 ! dorsal fin radial bone +is_a: UBERON:2101613 ! dorsal fin middle radial element +intersection_of: UBERON:2101613 ! dorsal fin middle radial element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2201613 ! dorsal fin middle radial cartilage + +[Term] +id: UBERON:2001614 +name: anal fin middle radial bone +namespace: uberon/phenoscape-anatomy +def: "anal fin middle radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +comment: Synonym anal fin medial radial from Weitzman, 1962. +synonym: "anal fin medial radial" EXACT [TAO:0001614] +synonym: "medial anal-fin radial" EXACT [TAO:0001614] +is_a: UBERON:2001671 ! anal fin radial bone +is_a: UBERON:2101614 ! anal fin middle radial element +intersection_of: UBERON:2101614 ! anal fin middle radial element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2201614 ! anal fin middle radial cartilage + +[Term] +id: UBERON:2001615 +name: sphenotic spine +namespace: uberon/phenoscape-anatomy +def: "Process of the sphenotic. The process may project antero-laterally or laterally or ventro-laterally and it has different development in different fish groups. The sphenotic spine is paired." [TAO:GA_TG] +synonym: "sphenotic process" EXACT [TAO:0001615] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2000587 ! sphenotic +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001616 +name: lateral ethmoid wing +namespace: uberon/phenoscape-anatomy +def: "Superficial and lateral bony projection anterior to orbital region. Sometimes with superficial ornamentation where in direct contact with skin." [TAO:wd] +comment: Synonym of lateral ethmoid wing: lateral ethmoid ventral wing (characiforms). +synonym: "lateral ethmoid ventral wing" EXACT [TAO:0001616] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2000226 ! lateral ethmoid bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001617 +name: trunk sensory canal +namespace: uberon/phenoscape-anatomy +def: "Sensory canal on trunk which is posterior to the pectoral girdle and often reaching to or onto the caudal fin. The trunk sensory canal is bilaterally paired." [TAO:wd] +comment: Pores frequently piercing scales if present; occasionally enclosed in bony ossicles. +synonym: "trunk lateral line canal" EXACT [TAO:0001617] +xref: ZFA:0005444 +is_a: UBERON:2001612 ! sensory canal +relationship: part_of UBERON:2001872 ! trunk sensory canal system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001619 +name: post-otic sensory canal +namespace: uberon/phenoscape-anatomy +def: "Sensory canal between and in close proximity to the trunk sensory canal and anteriorly with the otic and preoperculo-mandibular sensory canals. The post-otic sensory canal is bilaterally paired." [TAO:wd] +comment: May be continuous with to the trunk sensory canal and anteriorly with the otic and preoperculo-mandibular sensory canals. +synonym: "post-temporal canal" EXACT [TAO:0001619] +xref: ZFA:0005394 +is_a: UBERON:2001612 ! sensory canal +relationship: part_of UBERON:2001873 ! head sensory canal system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001620 +name: lagenar capsule +namespace: uberon/phenoscape-anatomy +def: "Anatomical cluster that consists of a bulla formed by the exoccipital and basioccipital bones, and surrounds the lagena." [TAO:wd] +xref: ZFA:0001627 +is_a: UBERON:0000075 ! subdivision of skeletal system +relationship: part_of UBERON:0003128 ! cranium +relationship: surrounds UBERON:0001844 ! cochlea +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001622 +name: odontode +namespace: uberon/phenoscape-anatomy +def: "Multi-tissue structure composed of enameloid and dentine surrounding a pulp cavity, and found either attached to dermal bone or freely in the skin." [TAO:wd] +synonym: "odontodes" EXACT PLURAL [TAO:0001622] +is_a: UBERON:0000481 ! multi-tissue structure +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001623 +name: type 1 odontode +namespace: uberon/phenoscape-anatomy +def: "Odontode that is attached to dermal bone." [TAO:wd] +comment: Term from Schaefer & Buitrago-Suarez 2002. +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:2001622 ! odontode +relationship: part_of UBERON:0008907 ! dermal bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001624 +name: type 2 odontode +namespace: uberon/phenoscape-anatomy +def: "Odontode that is attached to the skin and without association to dermal bone." [TAO:wd] +comment: Term from Schaefer & Buitrago-Suarez 2002. +is_a: UBERON:2001622 ! odontode +relationship: part_of UBERON:0002199 ! integument +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001626 +name: premaxillary tooth +namespace: uberon/phenoscape-anatomy +def: "Tooth that is attached to the premaxilla." [TAO:wd] +is_a: UBERON:0003267 ! tooth of upper jaw +intersection_of: UBERON:0001091 ! calcareous tooth +intersection_of: attaches_to UBERON:0002244 ! premaxilla +relationship: attaches_to UBERON:0002244 ! premaxilla +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001629 +name: otic sensory canal +namespace: uberon/phenoscape-anatomy +def: "Sensory canal between and in close proximity posteriorly with the post-otic and preoperculo-mandibular sensory canals, and anteriorly with the supraorbital and infraorbital sensory canals. The otic sensory canal is bilaterally paired." [TAO:wd] +comment: May be continuous with the post-otic and preoperculo-mandibular sensory canals, and anteriorly with the supraorbital and infraorbital sensory canals. +xref: ZFA:0005393 +is_a: UBERON:2001612 ! sensory canal +relationship: part_of UBERON:2001873 ! head sensory canal system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001630 +name: supratemporal sensory canal +namespace: uberon/phenoscape-anatomy +alt_id: UBERON:2001618 +def: "Sensory canal that crosses over the dorsal midline and in close proximity to the contralateral post-otic sensory canals. The supratemporal sensory canal is unpaired." [TAO:wd] +synonym: "occipital canal" EXACT [TAO:0001630] +synonym: "occipital sensory canal" EXACT [TAO:0001630] +synonym: "supratemporal canal" EXACT [TAO:0001630] +xref: ZFA:0005445 +is_a: UBERON:2001612 ! sensory canal +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001632 +name: ectopterygoid tooth +namespace: uberon/phenoscape-anatomy +def: "Tooth that is attached to the ectopterygoid bone." [TAO:wd] +is_a: UBERON:0012070 ! palatal tooth +intersection_of: UBERON:0001091 ! calcareous tooth +intersection_of: attaches_to UBERON:0011634 ! ectopterygoid bone +relationship: attaches_to UBERON:0011634 ! ectopterygoid bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001633 +name: entopterygoid tooth +namespace: uberon/phenoscape-anatomy +def: "Tooth that is attached to the entopterygoid bone." [TAO:wd] +synonym: "mesopterygoid tooth" EXACT [TAO:0001633] +is_a: UBERON:0001091 ! calcareous tooth +intersection_of: UBERON:0001091 ! calcareous tooth +intersection_of: attaches_to UBERON:2000657 ! entopterygoid +relationship: attaches_to UBERON:2000657 ! entopterygoid +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001634 +name: pharyngobranchial 1 cartilage +namespace: uberon/phenoscape-anatomy +def: "Most anterior pharyngobranchial cartilage, located medial to the epibranchials." [TAO:wd] +synonym: "infrapharyngobranchial 1 cartilage" EXACT [TAO:0001634] +is_a: UBERON:2001533 ! pharyngobranchial cartilage +is_a: UBERON:2001910 ! pharyngobranchial 1 element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001635 +name: pharyngobranchial 1 bone +namespace: uberon/phenoscape-anatomy +def: "Most anterior pharyngobranchial bone, located medial to the epibranchials." [TAO:wd] +synonym: "infrapharyngobranchial 1 bone" EXACT [TAO:0001635] +is_a: UBERON:2000527 ! pharyngobranchial bone +is_a: UBERON:2001910 ! pharyngobranchial 1 element +relationship: develops_from UBERON:2001634 ! pharyngobranchial 1 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001636 +name: pharyngobranchial 4 bone +namespace: uberon/phenoscape-anatomy +def: "Most posterior pharyngobranchial bone, located medial to the epibranchials." [TAO:wd] +synonym: "infrapharyngobranchial 4 bone" EXACT [TAO:0001636] +is_a: UBERON:2000527 ! pharyngobranchial bone +is_a: UBERON:2001913 ! pharyngobranchial 4 element +relationship: develops_from UBERON:2001251 ! pharyngobranchial 4 cartilage +relationship: overlaps UBERON:2001862 ! epibranchial 3-pharyngobranchial 4 joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001640 +name: notochordal ossification +namespace: uberon/phenoscape-anatomy +def: "Perichordal bone that surrounds the anterior tip of the notochord." [TAO:wd] +xref: ZFA:0001631 +is_a: UBERON:0008909 ! perichordal bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001647 +name: pharyngeal tooth plate +namespace: uberon/phenoscape-anatomy +def: "Dermal bone of the pharyngeal arches usually bearing teeth." [TAO:wd] +synonym: "pharyngeal toothplate" EXACT [TAO:0001647] +synonym: "tooth plate" EXACT [] +synonym: "toothplate" EXACT [] +is_a: UBERON:0008907 ! dermal bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001648 +name: basihyal tooth plate +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal tooth plate that lies dorsal to the basihyal cartilage or bone." [TAO:wd] +synonym: "basihyal toothplate" EXACT [TAO:0001648] +is_a: UBERON:2001647 ! pharyngeal tooth plate +relationship: part_of UBERON:0011153 ! ventral hyoid arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001649 +name: basihyal tooth +namespace: uberon/phenoscape-anatomy +def: "Tooth that is attached to the basihyal tooth plate." [TAO:wd] +is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0004756 ! dermal skeletal element +intersection_of: UBERON:0001091 ! calcareous tooth +intersection_of: part_of UBERON:2001648 ! basihyal tooth plate +relationship: part_of UBERON:2001648 ! basihyal tooth plate +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001650 +name: pharyngobranchial 2 tooth plate +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal tooth plate that lies ventral to pharyngobranchial 2 bone." [TAO:wd] +synonym: "pharyngobranchial 2 toothplate" EXACT [TAO:0001650] +is_a: UBERON:2002015 ! pharyngobranchial tooth plate +relationship: part_of UBERON:2001231 ! pharyngeal arch 4 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001651 +name: pharyngobranchial 2 tooth +namespace: uberon/phenoscape-anatomy +def: "Tooth that is attached to the pharyngobranchial 2 tooth plate." [TAO:wd] +is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0004756 ! dermal skeletal element +intersection_of: UBERON:0001091 ! calcareous tooth +intersection_of: part_of UBERON:2001650 ! pharyngobranchial 2 tooth plate +relationship: part_of UBERON:2001650 ! pharyngobranchial 2 tooth plate +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001652 +name: pharyngobranchial 3 tooth plate +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal tooth plate that lies ventral to pharyngobranchial 3 bone." [TAO:wd] +synonym: "pharyngobranchial 3 toothplate" EXACT [TAO:0001652] +is_a: UBERON:2002015 ! pharyngobranchial tooth plate +relationship: part_of UBERON:2001232 ! pharyngeal arch 5 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001653 +name: pharyngobranchial 3 tooth +namespace: uberon/phenoscape-anatomy +def: "Tooth that is part of the pharyngobranchial 3 tooth plate." [TAO:wd] +is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0004756 ! dermal skeletal element +intersection_of: UBERON:0001091 ! calcareous tooth +intersection_of: part_of UBERON:2001652 ! pharyngobranchial 3 tooth plate +relationship: part_of UBERON:2001652 ! pharyngobranchial 3 tooth plate +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001654 +name: upper pharyngeal 4 tooth plate +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal tooth plate that lies ventral to pharyngobranchial 4, and located anterior to upper pharyngeal 5 tooth plate." [TAO:wd] +synonym: "upper pharyngeal 4 toothplate" EXACT [TAO:0001654] +is_a: UBERON:2001647 ! pharyngeal tooth plate +relationship: part_of UBERON:2001230 ! pharyngeal arch 6 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001655 +name: upper pharyngeal 4 tooth +namespace: uberon/phenoscape-anatomy +def: "Tooth that is attached to the upper pharyngeal 4 tooth plate." [TAO:wd] +is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0004756 ! dermal skeletal element +intersection_of: UBERON:0001091 ! calcareous tooth +intersection_of: part_of UBERON:2001654 ! upper pharyngeal 4 tooth plate +relationship: part_of UBERON:2001654 ! upper pharyngeal 4 tooth plate +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001656 +name: upper pharyngeal 5 tooth plate +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal toothplate that lies ventral to pharyngobranchial 4, and located posterior to upper pharyngeal 4 tooth plate." [TAO:wd] +synonym: "upper pharyngeal 5 toothplate" EXACT [TAO:0001656] +is_a: UBERON:2001647 ! pharyngeal tooth plate +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001657 +name: upper pharyngeal 5 tooth +namespace: uberon/phenoscape-anatomy +def: "Tooth that is attached to the upper pharyngeal 5 tooth plate." [TAO:wd] +is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0004756 ! dermal skeletal element +intersection_of: UBERON:0001091 ! calcareous tooth +intersection_of: part_of UBERON:2001656 ! upper pharyngeal 5 tooth plate +relationship: part_of UBERON:2001656 ! upper pharyngeal 5 tooth plate +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001658 +name: upper pharyngeal tooth plate +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal tooth plate that lies ventral to pharyngobranchials 3 and 4." [TAO:wd] +comment: This represents the condition found in catfishes. +synonym: "upper pharyngeal toothplate" EXACT [TAO:0001658] +is_a: UBERON:2001647 ! pharyngeal tooth plate +relationship: overlaps UBERON:2001860 ! epibranchial 4-upper pharyngeal toothplate joint +relationship: part_of UBERON:2001229 ! pharyngeal arch 7 skeleton +relationship: part_of UBERON:2001230 ! pharyngeal arch 6 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001659 +name: upper pharyngeal tooth +namespace: uberon/phenoscape-anatomy +def: "Tooth that is attached to the upper pharyngeal tooth plate." [TAO:wd] +is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0004756 ! dermal skeletal element +intersection_of: UBERON:0001091 ! calcareous tooth +intersection_of: part_of UBERON:2001658 ! upper pharyngeal tooth plate +relationship: part_of UBERON:2001658 ! upper pharyngeal tooth plate +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001660 +name: basibranchial tooth +namespace: uberon/phenoscape-anatomy +def: "Tooth that is part of the basibranchial tooth plate." [TAO:wd] +is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0004756 ! dermal skeletal element +intersection_of: UBERON:0001091 ! calcareous tooth +intersection_of: part_of UBERON:2001661 ! basibranchial tooth plate +relationship: part_of UBERON:2001661 ! basibranchial tooth plate +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001661 +name: basibranchial tooth plate +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal tooth plate that lies dorsal to basibranchials 1-3." [TAO:wd] +synonym: "basibranchial 1-3 toothplates" EXACT PLURAL [TAO:0001661] +synonym: "basibranchial toothplate" EXACT [TAO:0001661] +is_a: UBERON:2001647 ! pharyngeal tooth plate +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001662 +name: basibranchial 4 tooth plate +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal tooth plate that lies dorsal to basibranchial 4 bone." [TAO:wd] +synonym: "basibranchial 4 toothplate" EXACT [TAO:0001662] +is_a: UBERON:2001647 ! pharyngeal tooth plate +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001663 +name: basibranchial 4 tooth +namespace: uberon/phenoscape-anatomy +def: "Tooth that is attached to the basibranchial 4 tooth plate." [TAO:wd] +is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0004756 ! dermal skeletal element +intersection_of: UBERON:0001091 ! calcareous tooth +intersection_of: part_of UBERON:2001662 ! basibranchial 4 tooth plate +relationship: part_of UBERON:2001662 ! basibranchial 4 tooth plate +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001664 +name: basibranchial 2 tooth plate +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal tooth plate that lies dorsal to basibranchial 2 bone." [TAO:wd] +synonym: "basibranchial 2 toothplate" EXACT [TAO:0001664] +is_a: UBERON:2001647 ! pharyngeal tooth plate +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001665 +name: basibranchial 2 tooth +namespace: uberon/phenoscape-anatomy +def: "Tooth that is attached to the basibranchial 2 tooth plate." [TAO:wd] +is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0004756 ! dermal skeletal element +intersection_of: UBERON:0001091 ! calcareous tooth +intersection_of: part_of UBERON:2001664 ! basibranchial 2 tooth plate +relationship: part_of UBERON:2001664 ! basibranchial 2 tooth plate +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001666 +name: rudimentary neural arch +namespace: uberon/phenoscape-anatomy +def: "Neural arch on the urostyle. It does not support a neural spine. Sanger and McCune 2002." [TAO:wd] +xref: ZFA:0001641 +is_a: UBERON:0003861 ! neural arch +relationship: part_of UBERON:0003106 ! urostyle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001671 +name: anal fin radial bone +namespace: uberon/phenoscape-anatomy +def: "anal fin radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +xref: ZFA:0001646 +is_a: UBERON:2005225 ! median fin radial bone +is_a: UBERON:2101671 ! anal fin radial element +intersection_of: UBERON:2101671 ! anal fin radial element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2201671 ! anal fin radial cartilage + +[Term] +id: UBERON:2001672 +name: dorsal fin radial bone +namespace: uberon/phenoscape-anatomy +def: "dorsal fin radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +xref: ZFA:0001647 +is_a: UBERON:0004247 ! bone of dorsum +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:2005225 ! median fin radial bone +is_a: UBERON:2101672 ! dorsal fin radial element +intersection_of: UBERON:2101672 ! dorsal fin radial element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2201672 ! dorsal fin radial cartilage + +[Term] +id: UBERON:2001674 +name: infraorbital 6 +namespace: uberon/phenoscape-anatomy +def: "Infraorbital that is the sixth bone of the infraorbital series." [TAO:wd] +synonym: "dermosphenotic" RELATED [TAO:0001674] +is_a: UBERON:2000376 ! infraorbital +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001675 +name: mesethmoid cornu +namespace: uberon/phenoscape-anatomy +def: "Bony projection that extends from the mesethmoid anteriorly. Mesethmoid cornua are paired processes each articulating with its ipsilateral premaxilla and both cornua bounding a median mesethmoid cleft." [TAO:pem] +synonym: "cornu" EXACT [TAO:0001675] +synonym: "cornua" EXACT PLURAL [TAO:0001675] +synonym: "cornuae" EXACT PLURAL [TAO:0001675] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0011238 ! mesethmoid bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001676 +name: mesethmoid-premaxillary joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the mesethmoid and premaxilla. Mesethmoid-premaxillary joint is paired." [TAO:pem] +is_a: UBERON:2001950 ! inter-premaxillary joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0002244 ! premaxilla +intersection_of: connects UBERON:0011238 ! mesethmoid bone +relationship: connects UBERON:0011238 ! mesethmoid bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001677 +name: mesethmoid-nasal joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the mesethmoid and nasal. Mesethmoid-nasal joint is paired." [TAO:pem] +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001681 ! nasal bone +intersection_of: connects UBERON:0011238 ! mesethmoid bone +relationship: connects UBERON:0001681 ! nasal bone +relationship: connects UBERON:0011238 ! mesethmoid bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001678 +name: mesethmoid-frontal joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the mesethmoid and frontal. Mesethmoid-frontal joint is paired." [TAO:pem] +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0004866 ! actinopterygian frontal bone +intersection_of: connects UBERON:0011238 ! mesethmoid bone +relationship: connects UBERON:0004866 ! actinopterygian frontal bone +relationship: connects UBERON:0011238 ! mesethmoid bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001679 +name: mesethmoid-lateral ethmoid joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the mesethmoid and lateral ethmoid. Mesethmoid-lateral ethmoid joint is paired." [TAO:wd] +xref: ZFA:0005648 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0011238 ! mesethmoid bone +intersection_of: connects UBERON:2000226 ! lateral ethmoid bone +relationship: connects UBERON:0011238 ! mesethmoid bone +relationship: connects UBERON:2000226 ! lateral ethmoid bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001680 +name: mesethmoid-vomer joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the mesethmoid and vomer. Mesethmoid-vomer joint is unpaired." [TAO:pem] +synonym: "mesethmoid-prevomer joint" EXACT [TAO:0001680] +xref: ZFA:0005649 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0002396 ! vomer +intersection_of: connects UBERON:0011238 ! mesethmoid bone +relationship: connects UBERON:0002396 ! vomer +relationship: connects UBERON:0011238 ! mesethmoid bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001681 +name: cornu mesial process +namespace: uberon/phenoscape-anatomy +def: "Bony projection that is mesially-directed and off the anteromedial corner of each mesethmoid cornu." [TAO:pem] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2001675 ! mesethmoid cornu +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001683 +name: transcapular ligament +namespace: uberon/phenoscape-anatomy +def: "Ligament that is attached to supracleithrum and basioccipital." [TAO:wd] +synonym: "Baudelot's ligament" EXACT [TAO:0001683] +synonym: "transscapular ligament" EXACT [TAO:0001683] +is_a: UBERON:0008846 ! skeletal ligament +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001684 +name: ossified transcapular ligament +namespace: uberon/phenoscape-anatomy +def: "Membrane bone that is fused to supracleithrum and is jointed to basioccipital and exoccipital." [TAO:pem] +synonym: "ossified Baudelot's ligament" EXACT [TAO:0001684] +synonym: "ossified transscapular ligament" EXACT [TAO:0001684] +is_a: UBERON:0007842 ! membrane bone +relationship: develops_from UBERON:2001683 ! transcapular ligament +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001685 +name: lateral ethmoid-ectopterygoid ligament +namespace: uberon/phenoscape-anatomy +def: "Lateral ethmoid-ectopterygoid ligament is a ligament that connects the lateral ethmoid to the ectopterygoid." [TAO:wd] +xref: ZFA:0005503 +is_a: UBERON:0008846 ! skeletal ligament +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001686 +name: bony shelf above orbit +namespace: uberon/phenoscape-anatomy +def: "The bony shelf above orbit is an anatomical cluster formed by the dorsolateral portions of the lateral ethmoid, frontal and sphenotic bones that forms the dorsal margin of the orbit." [TAO:wd] +xref: ZFA:0005531 +is_a: UBERON:0010912 ! subdivision of skeleton +relationship: part_of UBERON:0010323 ! cranial skeletal system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001687 +name: interopercular-mandibular ligament +namespace: uberon/phenoscape-anatomy +def: "Interopercular-mandibular ligament is a ligament that connects the interopercle to an element of the lower jaw, typically the retroarticular." [TAO:wd] +synonym: "interopercular-retroarticular ligament" EXACT [TAO:0001687] +synonym: "interoperculo-mandibular ligament" EXACT [TAO:0001687] +synonym: "interoperculomandibular ligament" EXACT [TAO:0001687] +xref: ZFA:0005501 +is_a: UBERON:0008846 ! skeletal ligament +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001688 +name: palatine cartilage +namespace: uberon/phenoscape-anatomy +def: "Cartilage that is separate from and anterior to the pterygoquadrate cartilage." [TAO:wd] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0011004 ! pharyngeal arch cartilage +relationship: develops_from UBERON:0004752 ! palatoquadrate cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001689 +name: pterygoquadrate cartilage +namespace: uberon/phenoscape-anatomy +def: "pterygoquadrate cartilage - cartilage that is separate from and posterior to the palatine cartilage." [TAO:wd] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0011004 ! pharyngeal arch cartilage +relationship: develops_from UBERON:0004752 ! palatoquadrate cartilage +relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001690 +name: anterior cartilage of palatine +namespace: uberon/phenoscape-anatomy +def: "anterior cartilage of palatine - cartilage that caps the anterior end of the autopalatine bone. It is typically present in adults." [TAO:wd] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0011004 ! pharyngeal arch cartilage +relationship: develops_from UBERON:2001688 ! palatine cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001691 +name: posterior cartilage of palatine +namespace: uberon/phenoscape-anatomy +def: "posterior cartilage of palatine - cartilage that caps the posterior end of the autopalatine bone. It is typically present in adults." [TAO:wd] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0011004 ! pharyngeal arch cartilage +relationship: develops_from UBERON:2001688 ! palatine cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001692 +name: median premaxilla +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that is located in the middle of the upper jaw, independently formed by fusion of tooth bases attached to soft tissue in the middle portion of the upper lip. The median premaxilla bears teeth in adults." [TAO:wd] +comment: Recorded in trichomycterid subfamilies Stegophilinae and Vandelliinae (Baskin, 1973). submitted by Mario de Pinna. +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0011597 ! bone of upper jaw +relationship: part_of UBERON:0003113 ! dermatocranium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001693 +name: protractor operculi +namespace: uberon/phenoscape-anatomy +def: "Muscle located in the lateral region of the cheek, linking the lateral surface of opercle with the posterolateral margin of the suspensorium (usually the preopercle)." [TAO:wd] +comment: Occurs in most members of the Trichomycteridae, except in basal Copionodontinae and Trichogeninae (de Pinna, 1992). +is_a: UBERON:0002376 ! cranial muscle +relationship: part_of UBERON:0001567 ! cheek +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001694 +name: humerovertebral ligament +namespace: uberon/phenoscape-anatomy +def: "Ligament that links the tip of the postcleithral process of the cleithrum with either the vertebral column (at the vertebral parapophysis or rib of the sixth vertebra) or with the soft tissue around the postcleithral region." [TAO:wd] +comment: Recorded in siluriform families Aspredinidae, Amblycipitidae, Akysidae, Sisoridae and Erethistidae (dePinna 1996). Submitted by Mario de Pinna. +is_a: UBERON:0008846 ! skeletal ligament +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001695 +name: mediopharyngobranchial +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal arch cartilage, elongate and usually bifurcated posteriorly, located anteriorly on the upper branchial arches, attached to the anterior tips of the first infrapharyngobranchials. It supports rows of gill rakers on each side and is not homologous to other structures in the teleost gill-arch skeleton. One or two mediopharyngobranchials may be present." [TAO:wd] +comment: Recorded in several Clupeoidei (Nelson, 1967). Submitted by Mario de Pinna. +is_a: UBERON:0011004 ! pharyngeal arch cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001696 +name: gongyloid cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal arch cartilage present on the dorsal surface of the middle portion of the upper branchial arches, dorsal to the point of contact between the second and third infrapharyngobranchials. It is round or cylyndrical in shape. Not homologous to the mediopharyngobranchial." [TAO:wd] +comment: Recorded in Pristigasteridae and Engraulidae, of Clupeiformes, apparently also present in Chanos, of Gonorynchiformes (Di Dario, 2002). +is_a: UBERON:0011004 ! pharyngeal arch cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001697 +name: transverse radial +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone, which may be ossified or not in adults, located immediately anteriorly to the pterygiophore series of the anal fin. The structure is usually cylindrical, and its plane of symmetry is transverse to that of pterygiophores and fin rays." [TAO:wd] +comment: Recorded in some Cetopsidae, Clariidae and Austroglanididae (Siluriformes) (De Pinna et al., 2007). +is_a: UBERON:0002513 ! endochondral bone +relationship: part_of UBERON:0002090 ! postcranial axial skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001698 +name: anal-fin stay +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone located posterior to the last anal fin pterygiophore. The anal fin stay is a median bone." [TAO:wd] +synonym: "anal fin stay" EXACT [TAO:0001698] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004376 ! fin bone +relationship: part_of UBERON:4000166 ! anal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001699 +name: dorsal-fin stay +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone located posterior to the last dorsal fin pterygiophore. The dorsal fin stay is a median bone." [TAO:wd] +synonym: "dorsal fin stay" EXACT [TAO:0001699] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004247 ! bone of dorsum +is_a: UBERON:0004376 ! fin bone +relationship: part_of UBERON:4000168 ! dorsal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001700 +name: caudal-fin stay +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that is located anterior to the caudal fin procurrent rays. Caudal fin stays are unpaired median bones." [TAO:wd] +comment: Development of caudal fin stays appears uncertain according to several authors (e.g., Zanata and Vari 2005, Vari 1995). +synonym: "caudal fin stay" EXACT [TAO:0001700] +is_a: UBERON:0004376 ! fin bone +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:4000167 ! caudal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001701 +name: basibranchial 5 bone +namespace: uberon/phenoscape-anatomy +def: "Basibranchial bone that is ventral, median, and associated with branchial arch 5 (pharyngeal arch 7). Develops in posterior copula cartilage or basibranchial 5 cartilage." [TAO:wd] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004740 ! basibranchial bone +is_a: UBERON:2001919 ! basibranchial 5 element +intersection_of: UBERON:2001919 ! basibranchial 5 element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2001866 ! basibranchial 5 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001702 +name: infraorbital 7 +namespace: uberon/phenoscape-anatomy +def: "Infraorbital that is the seventh bone of the infraorbital series." [TAO:wd] +is_a: UBERON:2000376 ! infraorbital +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001703 +name: infraorbital 8 +namespace: uberon/phenoscape-anatomy +def: "Infraorbital that is the eighth bone of the infraorbital series." [TAO:wd] +is_a: UBERON:2000376 ! infraorbital +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001704 +name: infraorbital 9 +namespace: uberon/phenoscape-anatomy +def: "Infraorbital that is the ninth bone of the infraorbital series." [TAO:wd] +is_a: UBERON:2000376 ! infraorbital +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001705 +name: infraorbital 10 +namespace: uberon/phenoscape-anatomy +def: "Infraorbital that is the tenth bone of the infraorbital series." [TAO:wd] +is_a: UBERON:2000376 ! infraorbital +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001706 +name: infraorbital 11 +namespace: uberon/phenoscape-anatomy +def: "Infraorbital that is the eleventh bone of the infraorbital series." [TAO:wd] +is_a: UBERON:2000376 ! infraorbital +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001707 +name: infraorbital 12 +namespace: uberon/phenoscape-anatomy +def: "Infraorbital that is the twelfth bone of the infraorbital series." [TAO:wd] +is_a: UBERON:2000376 ! infraorbital +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001708 +name: dermosphenotic +namespace: uberon/phenoscape-anatomy +def: "Infraorbital that is the last bone of the infraorbital series, carrying the infraorbital canal, and sometimes also the supraorbital, temporal, and/or preopercular canals. The dermosphenotic is sometimes sutured or fused completely to the skull, e.g. to the autosphenotic." [TAO:wd] +synonym: "infraorbital 5" RELATED [TAO:0001708] +synonym: "infraorbital 6" RELATED [TAO:0001708] +synonym: "infraorbital 7" RELATED [TAO:0001708] +synonym: "infraorbital 8" RELATED [TAO:0001708] +is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:2000376 ! infraorbital +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001709 +name: infraorbital series +namespace: uberon/phenoscape-anatomy +def: "Anatomical cluster that is the series of dermal bones surrounding the orbit and associated with the infraorbital sensory canal." [TAO:GA_TG] +comment: The infraorbital series may include the antorbital, a variable number of infraorbitals, and dermosphenotic (or posteriormost dorsal infraorbital). The infraorbital series may be formed by seven (primitively) or less bones in teleosts. Consequently, the so called dermosphenotic may correspond to the seventh, sixth or fifth bone, etc., depending on the taxon. +synonym: "circumorbital series" RELATED [TAO:0001709] +xref: ZFA:0001649 +is_a: UBERON:0000477 ! anatomical cluster +relationship: composed_primarily_of UBERON:2000376 ! infraorbital +relationship: part_of UBERON:0003113 ! dermatocranium +relationship: part_of UBERON:0011156 ! facial skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001710 +name: opercle-interopercle joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the opercle and interopercle. Opercle-interopercle joint is paired." [TAO:wd] +xref: ZFA:0005478 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:2000250 ! opercle +intersection_of: connects UBERON:2000674 ! interopercle +relationship: connects UBERON:2000250 ! opercle +relationship: connects UBERON:2000674 ! interopercle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001711 +name: frontal-pterotic joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the frontal and pterotic. Frontal-pterotic joint is paired." [TAO:wd] +xref: ZFA:0005468 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0004866 ! actinopterygian frontal bone +intersection_of: connects UBERON:2000576 ! pterotic +relationship: connects UBERON:0004866 ! actinopterygian frontal bone +relationship: connects UBERON:2000576 ! pterotic +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001713 +name: caudal principal ray 1 +namespace: uberon/phenoscape-anatomy +def: "Caudal principal ray that is the dorsalmost caudal principal ray of the caudal fin." [TAO:wd] +comment: For reference, see Weitzman and Fink 1985 Figure 8. +xref: ZFA:0005512 +is_a: UBERON:2001585 ! caudal principal ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001714 +name: caudal principal ray 2 +namespace: uberon/phenoscape-anatomy +def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 1." [TAO:wd] +comment: For reference, see Weitzman and Fink 1985 Figure 8. +xref: ZFA:0005514 +is_a: UBERON:2001585 ! caudal principal ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001715 +name: caudal principal ray 3 +namespace: uberon/phenoscape-anatomy +def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 2." [TAO:wd] +comment: For reference, see Weitzman and Fink 1985 Figure 8. +xref: ZFA:0005513 +is_a: UBERON:2001585 ! caudal principal ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001716 +name: caudal principal ray 4 +namespace: uberon/phenoscape-anatomy +def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 3." [TAO:wd] +comment: For reference, see Weitzman and Fink 1985 Figure 8. +xref: ZFA:0005515 +is_a: UBERON:2001585 ! caudal principal ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001717 +name: caudal principal ray 5 +namespace: uberon/phenoscape-anatomy +def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 4." [TAO:wd] +comment: For reference, see Weitzman and Fink 1985 Figure 8. +xref: ZFA:0005516 +is_a: UBERON:2001585 ! caudal principal ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001718 +name: caudal principal ray 6 +namespace: uberon/phenoscape-anatomy +def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 5." [TAO:wd] +comment: For reference, see Weitzman and Fink 1985 Figure 8. +xref: ZFA:0005517 +is_a: UBERON:2001585 ! caudal principal ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001719 +name: caudal principal ray 7 +namespace: uberon/phenoscape-anatomy +def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 6." [TAO:wd] +comment: For reference, see Weitzman and Fink 1985 Figure 8. +xref: ZFA:0005518 +is_a: UBERON:2001585 ! caudal principal ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001720 +name: caudal principal ray 8 +namespace: uberon/phenoscape-anatomy +def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 7." [TAO:wd] +comment: For reference, see Weitzman and Fink 1985 Figure 8. +xref: ZFA:0005519 +is_a: UBERON:2001585 ! caudal principal ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001721 +name: caudal principal ray 9 +namespace: uberon/phenoscape-anatomy +def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 8." [TAO:wd] +comment: For reference, see Weitzman and Fink 1985 Figure 8. +xref: ZFA:0005520 +is_a: UBERON:2001585 ! caudal principal ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001722 +name: caudal principal ray 10 +namespace: uberon/phenoscape-anatomy +def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 9." [TAO:wd] +comment: For reference, see Weitzman and Fink 1985 Figure 8. +xref: ZFA:0005521 +is_a: UBERON:2001585 ! caudal principal ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001723 +name: caudal principal ray 11 +namespace: uberon/phenoscape-anatomy +def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 10." [TAO:wd] +comment: For reference, see Weitzman and Fink 1985 Figure 8. +xref: ZFA:0005522 +is_a: UBERON:2001585 ! caudal principal ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001724 +name: caudal principal ray 12 +namespace: uberon/phenoscape-anatomy +def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 11." [TAO:wd] +comment: For reference, see Weitzman and Fink 1985 Figure 8. +xref: ZFA:0005523 +is_a: UBERON:2001585 ! caudal principal ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001725 +name: caudal principal ray 13 +namespace: uberon/phenoscape-anatomy +def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 12." [TAO:wd] +comment: For reference, see Weitzman and Fink 1985 Figure 8. +xref: ZFA:0005595 +is_a: UBERON:2001585 ! caudal principal ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001726 +name: caudal principal ray 14 +namespace: uberon/phenoscape-anatomy +def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 13." [TAO:wd] +comment: For reference, see Weitzman and Fink 1985 Figure 8. +xref: ZFA:0005524 +is_a: UBERON:2001585 ! caudal principal ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001727 +name: caudal principal ray 15 +namespace: uberon/phenoscape-anatomy +def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 14." [TAO:wd] +comment: For reference, see Weitzman and Fink 1985 Figure 8. +xref: ZFA:0005525 +is_a: UBERON:2001585 ! caudal principal ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001728 +name: caudal principal ray 16 +namespace: uberon/phenoscape-anatomy +def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 15." [TAO:wd] +comment: For reference, see Weitzman and Fink 1985 Figure 8. +xref: ZFA:0005526 +is_a: UBERON:2001585 ! caudal principal ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001729 +name: caudal principal ray 17 +namespace: uberon/phenoscape-anatomy +def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 16." [TAO:wd] +comment: For reference, see Weitzman and Fink 1985 Figure 8. +xref: ZFA:0005527 +is_a: UBERON:2001585 ! caudal principal ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001730 +name: caudal principal ray 18 +namespace: uberon/phenoscape-anatomy +def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 17." [TAO:wd] +comment: For reference, see Weitzman and Fink 1985 Figure 8. +xref: ZFA:0005528 +is_a: UBERON:2001585 ! caudal principal ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001731 +name: caudal principal ray 19 +namespace: uberon/phenoscape-anatomy +def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 18." [TAO:wd] +comment: For reference, see Weitzman and Fink 1985 Figure 8. +xref: ZFA:0005529 +is_a: UBERON:2001585 ! caudal principal ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001732 +name: vertebral element 5 +namespace: uberon/phenoscape-anatomy +def: "Vertebra that is posteriorly adjacent to vertebra 4." [TAO:wd] +xref: ZFA:0005347 +is_a: UBERON:0010913 ! vertebral element +relationship: overlaps UBERON:2001940 ! vertebra 4-vertebra 5 joint +relationship: overlaps UBERON:2002054 ! vertebra 5-vertebra 6 joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001733 +name: mesethmoid ventral diverging lamella +namespace: uberon/phenoscape-anatomy +def: "Bony projection that is the posterolaterally oriented projection on the ventral region of the mesethmoid. Mesethmoid ventral diverging lamellae are paired and posteriorly contact the lateral ethmoid bones." [TAO:wd] +comment: Reference: Weitzman 1962. +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0011238 ! mesethmoid bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001734 +name: posterior process of basipterygium +namespace: uberon/phenoscape-anatomy +def: "Process that is the posteriorly oriented, paired projection of the basipterygium." [TAO:wd] +synonym: "ischiac process" EXACT [TAO:0001734] +synonym: "ischiatic process" EXACT [TAO:0001734] +synonym: "posterior pelvic process" EXACT [http://hdl.handle.net/10088/11710] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2000623 ! basipterygium bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001735 +name: scapular foramen +namespace: uberon/phenoscape-anatomy +def: "Foramen that is located in the scapula. The scapular foramen is paired and formed by a ring of bone." [TAO:wd] +comment: Weitzman 1962. +xref: ZFA:0005431 +is_a: UBERON:0005744 ! bone foramen +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001737 +name: coracoid foramen +namespace: uberon/phenoscape-anatomy +def: "Foramen that is located in the coracoid." [TAO:wd] +xref: ZFA:0005426 +is_a: UBERON:0005744 ! bone foramen +relationship: part_of UBERON:0004743 ! coracoid bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001739 +name: anterior cranial fontanel +namespace: uberon/phenoscape-anatomy +def: "Fontanel that is located between the contralateral frontals and anterior to the epiphyseal bar." [TAO:wd] +synonym: "anterior fontanel" RELATED [TAO:0001739] +synonym: "frontal fontanel" EXACT [TAO:0001739] +synonym: "frontal fontanelle" EXACT [TAO:0001739] +is_a: UBERON:0002221 ! fontanelle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001740 +name: posterior cranial fontanel +namespace: uberon/phenoscape-anatomy +def: "Fontanel that is located posterior to the epiphyseal bar, and typically located between the contralateral frontals and parietals (if present) and bordered posteriorly by the supraoccipital." [TAO:wd] +synonym: "parietal fontanel" EXACT [TAO:0001740] +synonym: "posterior fontanel" RELATED [TAO:0001740] +synonym: "posterior fontanelle" RELATED [TAO:0001740] +is_a: UBERON:0002221 ! fontanelle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001741 +name: trigeminofacial foramen +namespace: uberon/phenoscape-anatomy +def: "Foramen through which branches of cranial nerves V (trigeminal) and VII (facial) exit." [TAO:wd] +comment: i]In some vertebrates there are separate trigeminal foramen and facial foramen. +synonym: "trigemino-facialis foramen" EXACT [TAO:0001741] +synonym: "trigeminofacial nerve foramen" EXACT [TAO:0001741] +synonym: "trigeminofacialis foramen" EXACT [TAO:0001741] +is_a: UBERON:0005744 ! bone foramen +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001742 +name: auditory foramen +namespace: uberon/phenoscape-anatomy +def: "Foramen through which cranial nerve VIII (auditory) exits." [TAO:wd] +comment: Reference: Weitzman 1962. +xref: ZFA:0005419 +is_a: UBERON:0005744 ! bone foramen +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001744 +name: replacement tooth trench +namespace: uberon/phenoscape-anatomy +def: "Anatomical space within a bone in which teeth develop." [TAO:wd] +synonym: "replacement tooth crypt" EXACT [TAO:0001744] +synonym: "replacement tooth crypts" EXACT PLURAL [TAO:0001744] +is_a: UBERON:0000464 ! anatomical space +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001745 +name: premaxilla replacement tooth trench +namespace: uberon/phenoscape-anatomy +def: "Replacement tooth trench that is located in the premaxilla." [TAO:wd] +is_a: UBERON:2001744 ! replacement tooth trench +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001746 +name: dentary replacement tooth trench +namespace: uberon/phenoscape-anatomy +def: "Replacement tooth trench that is located in the dentary." [TAO:wd] +is_a: UBERON:2001744 ! replacement tooth trench +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001747 +name: lateral mesethmoid wing +namespace: uberon/phenoscape-anatomy +def: "Bony projection located on the anteroventral region of the mesethmoid which articulates with the premaxilla." [TAO:wd] +comment: Synonyms: mesethmoid lateral wing (Zanata and Vari 2005) lateral ethmoid wing (Weitzman 1962) premaxillary articular process (Fink and Fink 1996). +synonym: "mesethmoid lateral wing" EXACT [TAO:0001747] +synonym: "premaxillary articular process" EXACT [TAO:0001747] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0011238 ! mesethmoid bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001748 +name: superficial ophthalmic nerve foramen +namespace: uberon/phenoscape-anatomy +def: "Foramen through which the superficial ophthalmic nerve passes." [TAO:wd] +xref: ZFA:0005432 +is_a: UBERON:0005744 ! bone foramen +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001749 +name: dentary-anguloarticular joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the dentary and anguloarticular. Dentary-anguloarticular joint is paired." [TAO:wd] +xref: ZFA:0005464 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0004742 ! dentary +intersection_of: connects UBERON:0004744 ! articular/anguloarticular +relationship: connects UBERON:0004742 ! dentary +relationship: connects UBERON:0004744 ! articular/anguloarticular +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001750 +name: rib of vertebra 6 +namespace: uberon/phenoscape-anatomy +def: "Rib that articulates with the parapophysis of the sixth centrum." [TAO:wd] +synonym: "sixth pleural rib" EXACT [TAO:0001750] +xref: ZFA:0005543 +is_a: UBERON:0002228 ! rib +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001751 +name: rib of vertebra 5 +namespace: uberon/phenoscape-anatomy +def: "Rib that articulates with the parapophysis of the fifth centrum." [TAO:wd] +synonym: "fifth pleural rib" EXACT [TAO:0001751] +xref: ZFA:0005542 +is_a: UBERON:0002228 ! rib +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001752 +name: pre-narial cartilage +namespace: uberon/phenoscape-anatomy +def: "The pre-narial cartilage is a cartilage that is located anterior to the anterior naris." [TAO:wd] +comment: Chen 1994. +is_a: UBERON:0003932 ! cartilage element of chondrocranium +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0011156 ! facial skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001753 +name: posttemporal fossa +namespace: uberon/phenoscape-anatomy +def: "Fossa where the exoccipital forms the medial portion and the epioccipital forms the lateral margin. The posttemporal fossa in most species has two openings separated by the epioccipital bridge." [ZFIN:ZDB-PUB-961014-192] {comment="http://dx.doi.org/10.1590/S1679-62252010000300001"} +comment: Chen 1994 gives these two synonyms: 'temporal fossa', Gauba 1967; and 'temporal groove', Mahajan 1966. +synonym: "temporal fossa" RELATED [TAO:0001753] +synonym: "temporal groove" EXACT [TAO:0001753] +xref: ZFA:0005628 +is_a: UBERON:0004704 ! bone fossa +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001754 +name: dorsal fin ray 1 +namespace: uberon/phenoscape-anatomy +synonym: "dorsal fin lepidotrichium 1" EXACT [] +xref: ZFA:0005355 +is_a: UBERON:4300116 ! dorsal fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001755 +name: dorsal fin ray 2 +namespace: uberon/phenoscape-anatomy +synonym: "dorsal fin lepidotrichium 2" EXACT [] +xref: ZFA:0005356 +is_a: UBERON:4300116 ! dorsal fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001756 +name: dorsal fin ray 3 +namespace: uberon/phenoscape-anatomy +synonym: "dorsal fin lepidotrichium 3" EXACT [] +xref: ZFA:0005357 +is_a: UBERON:4300116 ! dorsal fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001757 +name: dorsal fin ray 4 +namespace: uberon/phenoscape-anatomy +synonym: "dorsal fin lepidotrichium 4" EXACT [] +xref: ZFA:0005358 +is_a: UBERON:4300116 ! dorsal fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001758 +name: dorsal fin ray 5 +namespace: uberon/phenoscape-anatomy +synonym: "dorsal fin lepidotrichium 5" EXACT [] +xref: ZFA:0005359 +is_a: UBERON:4300116 ! dorsal fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001759 +name: dorsal fin ray 6 +namespace: uberon/phenoscape-anatomy +synonym: "dorsal fin lepidotrichium 6" EXACT [] +xref: ZFA:0005360 +is_a: UBERON:4300116 ! dorsal fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001760 +name: dorsal fin ray 7 +namespace: uberon/phenoscape-anatomy +synonym: "dorsal fin lepidotrichium 7" EXACT [] +xref: ZFA:0005361 +is_a: UBERON:4300116 ! dorsal fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001761 +name: pectoral fin ray 1 +namespace: uberon/phenoscape-anatomy +def: "Pectoral fin lepidotrichium 1 is the leading or marginal ray of the fin and articulates with the scapula. Lepidotrichium 1 is commonly segmented but unbranched but occasionally may be a massive strong unsegmented element (e.g., spine)." [TAO:GA_TG] +synonym: "pectoral fin lepidotrichium 1" EXACT [] +synonym: "pectoral fin ray 1" EXACT [TAO:0001761] +xref: ZFA:0005547 +is_a: UBERON:4500007 ! pectoral fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001762 +name: pectoral fin ray 2 +namespace: uberon/phenoscape-anatomy +def: "Pectoral fin lepidotrichium that, in a linear sequence, is the second most anterior pectoral ray that it is usually branched and segmented." [TAO:GA_TG] +synonym: "pectoral fin lepidotrichium 2" EXACT [] +synonym: "pectoral fin ray 2" EXACT [TAO:0001762] +xref: ZFA:0005548 +is_a: UBERON:4500007 ! pectoral fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001763 +name: pectoral fin ray 3 +namespace: uberon/phenoscape-anatomy +def: "Pectoral fin lepidotrichium that, in a linear sequence, is the third most anterior pectoral ray that it is usually branched and segmented." [TAO:GA_TG] +synonym: "pectoral fin lepidotrichium 3" EXACT [] +synonym: "pectoral fin ray 3" EXACT [TAO:0001763] +xref: ZFA:0005549 +is_a: UBERON:4500007 ! pectoral fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001764 +name: pectoral fin ray 4 +namespace: uberon/phenoscape-anatomy +def: "Pectoral fin lepidotrichium that, in a linear sequence, is the fourth most anterior pectoral ray that it is usually branched and segmented." [TAO:GA_TG] +synonym: "pectoral fin lepidotrichium 4" EXACT [] +synonym: "pectoral fin ray 4" EXACT [TAO:0001764] +xref: ZFA:0005553 +is_a: UBERON:4500007 ! pectoral fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001765 +name: pectoral fin ray 5 +namespace: uberon/phenoscape-anatomy +def: "Pectoral fin lepidotrichium that, in a linear sequence, is the fifth most anterior pectoral ray that it is usually branched and segmented." [TAO:GA_TG] +synonym: "pectoral fin lepidotrichium 5" EXACT [] +synonym: "pectoral fin ray 5" EXACT [TAO:0001765] +xref: ZFA:0005552 +is_a: UBERON:4500007 ! pectoral fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001766 +name: pectoral fin ray 6 +namespace: uberon/phenoscape-anatomy +def: "Pectoral fin lepidotrichium that, in a linear sequence, is the sixth most anterior pectoral ray that it is usually branched and segmented." [TAO:GA_TG] +synonym: "pectoral fin lepidotrichium 6" EXACT [] +synonym: "pectoral fin ray 6" EXACT [TAO:0001766] +xref: ZFA:0005550 +is_a: UBERON:4500007 ! pectoral fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001767 +name: pectoral fin ray 7 +namespace: uberon/phenoscape-anatomy +def: "Pectoral fin lepidotrichium that, in a linear sequence, is the seventh most anterior pectoral ray that it is usually branched and segmented." [TAO:GA_TG] +synonym: "pectoral fin lepidotrichium 7" EXACT [] +synonym: "pectoral fin ray 7" EXACT [TAO:0001767] +xref: ZFA:0005551 +is_a: UBERON:4500007 ! pectoral fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001768 +name: retractor tentaculi +namespace: uberon/phenoscape-anatomy +def: "Bilaterally paired dorsal hyoid arch muscle that retracts the maxillary barbel." [TAO:wd] +is_a: UBERON:0002376 ! cranial muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001769 +name: anal fin ray 1 +namespace: uberon/phenoscape-anatomy +synonym: "anal fin lepidotrichium 1" EXACT [] +xref: ZFA:0005399 +is_a: UBERON:4500006 ! anal fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001770 +name: anal fin ray 2 +namespace: uberon/phenoscape-anatomy +synonym: "anal fin lepidotrichium 2" EXACT [] +xref: ZFA:0005400 +is_a: UBERON:4500006 ! anal fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001771 +name: anal fin ray 3 +namespace: uberon/phenoscape-anatomy +synonym: "anal fin lepidotrichium 3" EXACT [] +xref: ZFA:0005401 +is_a: UBERON:4500006 ! anal fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001772 +name: anal fin ray 4 +namespace: uberon/phenoscape-anatomy +synonym: "anal fin lepidotrichium 4" EXACT [] +xref: ZFA:0005402 +is_a: UBERON:4500006 ! anal fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001773 +name: anal fin ray 5 +namespace: uberon/phenoscape-anatomy +synonym: "anal fin lepidotrichium 5" EXACT [] +xref: ZFA:0005403 +is_a: UBERON:4500006 ! anal fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001774 +name: anal fin ray 6 +namespace: uberon/phenoscape-anatomy +synonym: "anal fin lepidotrichium 6" EXACT [] +xref: ZFA:0005404 +is_a: UBERON:4500006 ! anal fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001775 +name: anal fin ray 7 +namespace: uberon/phenoscape-anatomy +synonym: "anal fin lepidotrichium 7" EXACT [] +xref: ZFA:0005405 +is_a: UBERON:4500006 ! anal fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001776 +name: pelvic fin ray 1 +namespace: uberon/phenoscape-anatomy +synonym: "pelvic fin lepidotrichium 1" EXACT [] +xref: ZFA:0005554 +is_a: UBERON:4300117 ! pelvic fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001777 +name: pelvic fin ray 2 +namespace: uberon/phenoscape-anatomy +synonym: "pelvic fin lepidotrichium 2" EXACT [] +xref: ZFA:0005555 +is_a: UBERON:4300117 ! pelvic fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001778 +name: pelvic fin ray 3 +namespace: uberon/phenoscape-anatomy +synonym: "pelvic fin lepidotrichium 3" EXACT [] +xref: ZFA:0005557 +is_a: UBERON:4300117 ! pelvic fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001779 +name: pelvic fin ray 4 +namespace: uberon/phenoscape-anatomy +synonym: "pelvic fin lepidotrichium 4" EXACT [] +xref: ZFA:0005556 +is_a: UBERON:4300117 ! pelvic fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001780 +name: pelvic fin ray 5 +namespace: uberon/phenoscape-anatomy +synonym: "pelvic fin lepidotrichium 5" EXACT [] +is_a: UBERON:4300117 ! pelvic fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001781 +name: pelvic fin ray 6 +namespace: uberon/phenoscape-anatomy +synonym: "pelvic fin lepidotrichium 6" EXACT [] +is_a: UBERON:4300117 ! pelvic fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001782 +name: pelvic fin ray 7 +namespace: uberon/phenoscape-anatomy +synonym: "pelvic fin lepidotrichium 7" EXACT [] +is_a: UBERON:4300117 ! pelvic fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001783 +name: supraoccipital crest +namespace: uberon/phenoscape-anatomy +def: "Process that is part of the supraoccipital. It is a posteriorly directed and unpaired median projection off the posterior margin of the supraoccipital bone." [TAO:GA_TG] +comment: The supraoccipital crest may be small and restricted to the dorsal part of the supraoccipital, or may be large and long and extending ventrally to the dorsal margin of the foramen magnum. The supraoccipital crest may be a large process extending above the skull roof in some teleostean subgroups. +synonym: "supraoccipital process" EXACT [TAO:0001783] +synonym: "supraoccipital spine" EXACT [TAO:0001783] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0004747 ! supraoccipital bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001784 +name: autopalatine-vomer joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates autopalatine and vomer bones. Autopalatine-vomer joint is paired." [TAO:wd] +xref: ZFA:0005422 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0002396 ! vomer +intersection_of: connects UBERON:2000620 ! autopalatine +relationship: connects UBERON:0002396 ! vomer +relationship: connects UBERON:2000620 ! autopalatine +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001785 +name: branched dorsal fin ray +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005534 +is_a: UBERON:4300116 ! dorsal fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001786 +name: unbranched dorsal fin ray +namespace: uberon/phenoscape-anatomy +synonym: "dorsal fin unbranched ray" EXACT [] +is_a: UBERON:4300116 ! dorsal fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001787 +name: pectoral fin spine +namespace: uberon/phenoscape-anatomy +def: "Pectoral-fin lepidotrichium 1 with mostly co-ossified and unsegmented hemitrichia that form a stiff and usually thick shaft and enlarged basal processes that moveably articulate with the pectoral girdle. The pectoral fin spine may also result from the fusion of several lepidotrichia that form a stiff shaft." [TAO:GA_TG, TAO:wd] +synonym: "pectoral spine" EXACT [TAO:0001787] +is_a: UBERON:4000175 ! pectoral fin lepidotrichium +is_a: UBERON:4500009 ! paired fin spine +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001788 +name: pelvic splint +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that is located near the lateral margin of the pelvic fin, and lateral to pelvic-fin lepidotrichium 1." [TAO:wd] +is_a: UBERON:0004375 ! bone of free limb or fin +is_a: UBERON:0004376 ! fin bone +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0010742 ! bone of pelvic complex +relationship: part_of UBERON:0010711 ! pelvic fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001789 +name: dorsal fin spine 1 +namespace: uberon/phenoscape-anatomy +def: "Dorsal-fin lepidotrichium 1 with co-ossified and unsegmented hemitrichia that form a stiff shaft and enlarged base that moveably articulates with first (anteriormost) dorsal-fin pterygiophore." [TAO:wd] +synonym: "dorsal spine 1" EXACT [TAO:0001789] +is_a: UBERON:2002261 ! dorsal fin spine +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001790 +name: dorsal fin spine 2 +namespace: uberon/phenoscape-anatomy +def: "Dorsal-fin lepidotrichium 2 with co-ossified and unsegmented hemitrichia that form a stiff shaft and enlarged base that moveably articulates with second dorsal-fin pterygiophore." [TAO:wd] +synonym: "dorsal spine 2" EXACT [TAO:0001790] +is_a: UBERON:2002261 ! dorsal fin spine +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001792 +name: pharyngobranchial 3 bone uncinate process +namespace: uberon/phenoscape-anatomy +def: "Bony projection that is part of the pharyngobranchial 3." [TAO:wd] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2001252 ! pharyngobranchial 3 bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001793 +name: pharyngobranchial 4 bone uncinate process +namespace: uberon/phenoscape-anatomy +def: "Bony projection that is part of the pharyngobranchial 4." [TAO:wd] +synonym: "infrapharyngobranchial 4 bone uncinate process" EXACT [TAO:0001793] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2001636 ! pharyngobranchial 4 bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001794 +name: orbitosphenoid-prootic joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates orbitosphenoid and prootic bones. Orbitosphenoid-prootic joint is paired." [TAO:wd] +xref: ZFA:0005480 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0002478 ! orbitosphenoid +intersection_of: connects UBERON:0004746 ! prootic bone +relationship: connects UBERON:0002478 ! orbitosphenoid +relationship: connects UBERON:0004746 ! prootic bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001795 +name: ceratohyal foramen +namespace: uberon/phenoscape-anatomy +def: "Foramen in the anterior ceratohyal for passage of the hyoidean artery." [TAO:wd] +synonym: "bericiform foramen" EXACT [TAO:0001795] +synonym: "beryciform foramen" EXACT [TAO:0001795] +is_a: UBERON:0005744 ! bone foramen +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001796 +name: epibranchial 2 bone uncinate process +namespace: uberon/phenoscape-anatomy +def: "Epibranchial uncinate process that is part of epibranchial 2 bone." [TAO:wd] +is_a: UBERON:2001382 ! epibranchial bone uncinate process +relationship: part_of UBERON:2001246 ! epibranchial 2 bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001797 +name: epibranchial 1 bone uncinate process +namespace: uberon/phenoscape-anatomy +def: "Epibranchial uncinate process that is part of epibranchial 1 bone." [TAO:wd] +is_a: UBERON:2001382 ! epibranchial bone uncinate process +relationship: part_of UBERON:2001243 ! epibranchial 1 bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001798 +name: epicentral bone +namespace: uberon/phenoscape-anatomy +def: "Intermuscular bone that articulates with the vertebral centrum." [TAO:wd] +synonym: "diépipleural" EXACT [PSPUB:0000131] +synonym: "neoneural" EXACT [PSPUB:0000165, PSPUB:0000166] +is_a: UBERON:2000526 ! intermuscular bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001799 +name: recessus lateralis +namespace: uberon/phenoscape-anatomy +def: "Intracranial space formed by confluence of supraorbital, infraorbital, preopercular and temporal sensory canals. See also Di Dario (2004)." [TAO:wd] +xref: ZFA:0005493 +is_a: UBERON:0000464 ! anatomical space +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001800 +name: cephalic rib +namespace: uberon/phenoscape-anatomy +def: "Modified epicentral intermuscular bone that connects the back of the skull with the pectoral girdle." [TAO:wd] +is_a: UBERON:2001798 ! epicentral bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001801 +name: quadrate-hyomandibula joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates quadrate and hyomandibula bones. Quadrate-hyomandibula joint is paired." [TAO:wd] +xref: ZFA:0005485 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0006597 ! quadrate bone +intersection_of: connects UBERON:0011606 ! hyomandibular bone +relationship: connects UBERON:0006597 ! quadrate bone +relationship: connects UBERON:0011606 ! hyomandibular bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001803 +name: quadrate-metapterygoid joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates quadrate and metapterygoid bones. Quadrate-metapterygoid joint is paired." [TAO:wd] +xref: ZFA:0005486 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0006597 ! quadrate bone +intersection_of: connects UBERON:2000240 ! metapterygoid +relationship: connects UBERON:0006597 ! quadrate bone +relationship: connects UBERON:2000240 ! metapterygoid +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001804 +name: olfactory nerve foramen +namespace: uberon/phenoscape-anatomy +def: "Foramen for the passage of the olfactory nerve or cranial nerve 1." [TAO:wd] +xref: ZFA:0005429 +is_a: UBERON:0005744 ! bone foramen +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001805 +name: articular bone +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone that is located posterior to the dentary, medial to the angular and antero-dorsal to the retroarticular forming the lower jaw. The articular bears a dorso-posterior articular facet for the condyle of the quadrate. The articular is a paired bone." [TAO:wd] +comment: The articular fuses with the angular bone in clupeocephalans forming the anguloarticular. +synonym: "articular" EXACT [TAO:0001805] +xref: AAO:0000028 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004768 ! bone of lower jaw +relationship: develops_from UBERON:0003107 ! Meckel's cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001806 +name: intracranial diverticulum of swimbladder +namespace: uberon/phenoscape-anatomy +def: "An anterior extension of the swimbladder that passes through a foramen in the exoccipital; part of the otophysic connection between swimbladder and inner ear." [TAO:wd] +is_a: UBERON:0004111 ! anatomical conduit +relationship: part_of UBERON:0006860 ! swim bladder +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001807 +name: preepiotic fossa +namespace: uberon/phenoscape-anatomy +def: "Fossa that is a concavity on the dorsolateral surface of the skull roof found at least partially on the epiotic (epioccipital)." [TAO:wd] +synonym: "preepioccipital fossa" EXACT [TAO:0001807] +is_a: UBERON:0004704 ! bone fossa +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001808 +name: facial foramen +namespace: uberon/phenoscape-anatomy +def: "Foramen through which cranial nerve VII (facial) exits." [TAO:wd] +comment: This is the anterior opening of the trigeminofacialis (or trigeminal-facialis) chamber. +synonym: "anterior opening trigeminofacialis chamber" EXACT [TAO:0001808] +is_a: UBERON:0005744 ! bone foramen +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001809 +name: trigeminal foramen +namespace: uberon/phenoscape-anatomy +def: "Foramen through which cranial nerve V (trigeminal) exits." [TAO:wd] +comment: This is the posterior opening of trigeminofacialis (or trigeminal-facialis) chamber. +synonym: "posterior opening of trigeminofacialis chamber " EXACT [TAO:0001809] +is_a: UBERON:0005744 ! bone foramen +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001810 +name: supraorbital sensory canal +namespace: uberon/phenoscape-anatomy +def: "Sensory canal anterior to and in close proximity to the otic and infraorbital sensory canals. The supraorbital sensory canal is bilaterally paired." [TAO:wd] +comment: May be continuous with otic and infraorbital sensory canals. +synonym: "supraorbital canal" EXACT [TAO:0001810] +xref: ZFA:0005396 +is_a: UBERON:2001612 ! sensory canal +relationship: part_of UBERON:2001873 ! head sensory canal system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001811 +name: infraorbital sensory canal +namespace: uberon/phenoscape-anatomy +def: "Sensory canal lateral or ventral to and in close proximity to the otic and supraorbital sensory canals at their union. The infraorbital sensory canal is bilaterally paired and associated with the infraorbital bones." [TAO:wd] +comment: May be continuous with otic and supraorbital sensory canals at their union. +synonym: "infraorbital canal" EXACT [TAO:0001811] +xref: ZFA:0005392 +is_a: UBERON:2001612 ! sensory canal +relationship: part_of UBERON:2001873 ! head sensory canal system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001812 +name: preoperculo-mandibular sensory canal +namespace: uberon/phenoscape-anatomy +def: "Sensory canal lateral or ventral to and in close proximity to the otic and post-otic sensory canals at their union. The preoperculo-mandibular sensory canal is bilaterally paired and associated with the preopercle, angular and dentary bones." [TAO:wd] +comment: May be continuous with the otic and post-otic sensory canals at their union. +synonym: "preoperculo-mandibular canal" EXACT [TAO:0001812] +xref: ZFA:0005395 +is_a: UBERON:2001612 ! sensory canal +relationship: part_of UBERON:2001873 ! head sensory canal system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001813 +name: preopercular sensory canal +namespace: uberon/phenoscape-anatomy +def: "Sensory canal lateral or ventral to and in close proximity with the otic and post-otic sensory canals at their union, and anteroventrally with the mandibular sensory canal. The preopercular sensory canal is bilaterally paired and associated with the preopercle bone." [TAO:wd] +comment: May be continuous with the otic and post-otic sensory canals at their union. +xref: ZFA:0005448 +is_a: UBERON:2001612 ! sensory canal +relationship: part_of UBERON:2001812 ! preoperculo-mandibular sensory canal +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001814 +name: mandibular sensory canal +namespace: uberon/phenoscape-anatomy +def: "Sensory canal anterior and ventral to and in close proximity with the preoperculo-mandibular sensory canal. The mandible sensory canal is bilaterally paired and associated with the angular and dentary bones." [TAO:wd] +comment: May be continuous with the preoperculo-mandibular sensory canal. +synonym: "mandibular canal" RELATED [TAO:0001814] +xref: ZFA:0005451 +is_a: UBERON:2001612 ! sensory canal +relationship: part_of UBERON:2001812 ! preoperculo-mandibular sensory canal +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001815 +name: nuchal plate +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that is a bony expansion in the integument anterior to or flanking the dorsal fin that is part of and at the distal end of a supraneural or dorsal fin proximal radial." [TAO:wd] +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:2002063 ! nuchal plate series +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001816 +name: anterior nuchal plate +namespace: uberon/phenoscape-anatomy +def: "Nuchal plate that is unpaired and part of the supraneural and in contact, or not, with the supraoccipital crest anteriorly and middle nuchal plate posteriorly." [TAO:wd] +synonym: "first nuchal plate" EXACT [TAO:0001816] +is_a: UBERON:2001815 ! nuchal plate +relationship: part_of UBERON:2000442 ! supraneural bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001817 +name: middle nuchal plate +namespace: uberon/phenoscape-anatomy +def: "Nuchal plate that is unpaired and part of dorsal fin proximal radial 1 and usually in contact with the anterior nuchal plate and paired posterior nuchal plates." [TAO:wd] +synonym: "median nuchal plate" EXACT [TAO:0001817] +synonym: "second nuchal plate" EXACT [TAO:0001817] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004247 ! bone of dorsum +is_a: UBERON:0004376 ! fin bone +is_a: UBERON:2001815 ! nuchal plate +relationship: part_of UBERON:2001818 ! dorsal fin proximal radial bone 1 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001818 +name: dorsal fin proximal radial bone 1 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin proximal radial 1 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +xref: ZFA:0005362 +is_a: UBERON:2000947 ! dorsal fin proximal radial bone +is_a: UBERON:2101818 ! dorsal fin proximal radial element 1 +intersection_of: UBERON:2101818 ! dorsal fin proximal radial element 1 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2201818 ! dorsal fin proximal radial cartilage 1 + +[Term] +id: UBERON:2001819 +name: dorsal fin proximal radial bone 2 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin proximal radial 2 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +xref: ZFA:0005363 +is_a: UBERON:2000947 ! dorsal fin proximal radial bone +is_a: UBERON:2101819 ! dorsal fin proximal radial element 2 +intersection_of: UBERON:2101819 ! dorsal fin proximal radial element 2 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2201819 ! dorsal fin proximal radial cartilage 2 + +[Term] +id: UBERON:2001820 +name: posterior nuchal plate +namespace: uberon/phenoscape-anatomy +def: "Paired nuchal plate that is part of dorsal fin proximal radial 2 and usually in contact with the middle nuchal plate." [TAO:wd] +synonym: "third nuchal plate" EXACT [TAO:0001820] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004247 ! bone of dorsum +is_a: UBERON:0004376 ! fin bone +is_a: UBERON:2001815 ! nuchal plate +relationship: part_of UBERON:2001819 ! dorsal fin proximal radial bone 2 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001821 +name: notochord posterior region +namespace: uberon/phenoscape-anatomy +def: "Portion of tissue that is part of the caudal fin." [TAO:wd] +xref: ZFA:0001670 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0002328 ! notochord +relationship: part_of UBERON:4000167 ! caudal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001822 +name: epibranchial 3 bone uncinate process +namespace: uberon/phenoscape-anatomy +def: "Epibranchial uncinate process that is part of epibranchial 3 bone." [TAO:wd] +is_a: UBERON:2001382 ! epibranchial bone uncinate process +relationship: part_of UBERON:2001247 ! epibranchial 3 bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001823 +name: epibranchial 4 bone uncinate process +namespace: uberon/phenoscape-anatomy +def: "Epibranchial uncinate process that is part of epibranchial 4 bone." [TAO:wd] +is_a: UBERON:2001382 ! epibranchial bone uncinate process +relationship: part_of UBERON:2001245 ! epibranchial 4 bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001824 +name: lateral line scale +namespace: uberon/phenoscape-anatomy +def: "Scale that is associated with the lateral line sensory canal." [TAO:wd] +xref: ZFA:0005530 +is_a: UBERON:0007380 ! dermal scale +relationship: part_of UBERON:2002099 ! lateral line scale series +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001825 +name: urohyal lateral process +namespace: uberon/phenoscape-anatomy +def: "Process that is part of the urohyal; it is the posterolaterally directed process located on the ventrolateral margin of urohyal. Urohyal lateral process is paired." [TAO:wd] +comment: Synonyms: urohyal lateral lamella (Toledo-Piza 2007; Zanata and Vari 2005)\nurohyal ventral wing (Castro and Vari 2004). +synonym: "branche ventrale de l'urohyal" EXACT [PSPUB:0000164] +synonym: "processus hyo-pelvien" EXACT [PSPUB:0000139] +synonym: "urohyal lateral lamella" EXACT [TAO:0001825] +synonym: "urohyal ventral wing" EXACT [TAO:0001825] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2000452 ! urohyal +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001826 +name: urohyal median process +namespace: uberon/phenoscape-anatomy +def: "Process that is part of the urohyal; it is the posterodorsally directed and median process located on the dorsal margin of the urohyal." [TAO:wd] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2000452 ! urohyal +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001827 +name: premaxillary-maxillary ligament +namespace: uberon/phenoscape-anatomy +def: "Ligament that connects the premaxilla to the maxilla." [TAO:wd] +xref: ZFA:0005265 +is_a: UBERON:0008846 ! skeletal ligament +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001828 +name: primordial ligament +namespace: uberon/phenoscape-anatomy +def: "Ligament that connects the maxilla with the lower jaw." [TAO:wd] +comment: Synonym articular-maxillary ligament (Alexander 1964). +synonym: "articular-maxillary ligament" EXACT [TAO:0001828] +synonym: "ligamentum primordiale " EXACT [TAO:0001828] +synonym: "maxillo-mandibular ligament" EXACT [TAO:0001828] +xref: ZFA:0005264 +is_a: UBERON:0008846 ! skeletal ligament +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001829 +name: caudal fin dorsal procurrent ray +namespace: uberon/phenoscape-anatomy +alt_id: UBERON:2005262 +def: "Caudal procurrent ray that forms part of the anterior dorsal series of lepidotrichia of the caudal fin and may be associated with a neural spine or a epural or a uroneural. A pair of hemitrichia forms each ray." [TAO:Arratia_2008, TAO:wd] +synonym: "dorsal caudal procurrent ray" EXACT [TAO:0001829] +synonym: "dorsal procurrent caudal-fin ray" EXACT [TAO:0001829] +xref: ZFA:0005262 +is_a: UBERON:2001584 ! caudal procurrent ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001830 +name: caudal fin ventral procurrent ray +namespace: uberon/phenoscape-anatomy +alt_id: UBERON:2005263 +def: "Caudal procurrent ray that forms part of the anterior ventral series of lepidotrichia of the caudal fin that may be associated with a neural spine or a epural or an uroneural (dorsal series) and with a hemal spine of a preural vertebra (ventral series). A caudal procurrent ray is an unpaired median bone." [TAO:Arratia_2008, TAO:wd] +synonym: "precurrent ray" EXACT [TAO:0001830] +synonym: "rudimentary ray" RELATED [TAO:0001830] +synonym: "ventral caudal procurrent ray" EXACT [TAO:0001830] +synonym: "ventral procurrent caudal-fin ray" EXACT [TAO:0001830] +synonym: "ventral procurrent ray" EXACT [TAO:0001830] +xref: ZFA:0005263 +is_a: UBERON:2001584 ! caudal procurrent ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001831 +name: pterosphenoid-orbitosphenoid joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the pterosphenoid and orbitosphenoid. Pterosphenoid-orbitosphenoid joint is paired." [TAO:wd] +xref: ZFA:0005483 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0002478 ! orbitosphenoid +intersection_of: connects UBERON:2000419 ! pterosphenoid +relationship: connects UBERON:0002478 ! orbitosphenoid +relationship: connects UBERON:2000419 ! pterosphenoid +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001832 +name: parasphenoid-basioccipital joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the parasphenoid and basioccipital. Parasphenoid-basioccipital joint is unpaired." [TAO:wd] +xref: ZFA:0005560 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001692 ! basioccipital bone +intersection_of: connects UBERON:0004745 ! parasphenoid +relationship: connects UBERON:0001692 ! basioccipital bone +relationship: connects UBERON:0004745 ! parasphenoid +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001833 +name: premaxillary tooth row +namespace: uberon/phenoscape-anatomy +def: "Tooth row that is on the premaxilla." [TAO:wd] +is_a: UBERON:0009678 ! tooth row +relationship: composed_primarily_of UBERON:2001626 ! premaxillary tooth +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001840 +name: tip +namespace: uberon/phenoscape-anatomy +def: "Anatomical point that is the apex of a projection or anything long and tapered; can be bony or cartilage" [TAO:wd] +synonym: "tips" EXACT PLURAL [TAO:0001840] +is_a: UBERON:0006983 ! anatomical point +relationship: part_of UBERON:0004529 ! anatomical projection +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001841 +name: interhyal-epihyal joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the interhyal and epihyal bones, or interhyal and ceratohyal cartilages. Interhyal-epihyal joint is paired." [TAO:wd] +comment: Logical definition to be added after generic element classes added to group/bone cartilage +xref: ZFA:0005473 +is_a: UBERON:0000982 ! skeletal joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001842 +name: epihyal-ceratohyal joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the epihyal and ceratohyal bones. Epihyal-ceratohyal joint is paired." [TAO:wd] +xref: ZFA:0005497 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0011611 ! ceratohyal bone +intersection_of: connects UBERON:2000627 ! posterior ceratohyal +relationship: connects UBERON:0011611 ! ceratohyal bone +relationship: connects UBERON:2000627 ! posterior ceratohyal +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001843 +name: ceratohyal-dorsal hypohyal joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the ceratohyal and dorsal hypohyal bones. Ceratohyal-dorsal hypohyal joint is paired." [TAO:wd] +xref: ZFA:0005467 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0011611 ! ceratohyal bone +intersection_of: connects UBERON:2000196 ! dorsal hypohyal bone +relationship: connects UBERON:0011611 ! ceratohyal bone +relationship: connects UBERON:2000196 ! dorsal hypohyal bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001844 +name: ceratohyal-ventral hypohyal joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the ceratohyal and ventral hypohyal bones. Ceratohyal-ventral hypohyal joint is paired." [TAO:wd] +xref: ZFA:0005466 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0011611 ! ceratohyal bone +intersection_of: connects UBERON:2000300 ! ventral hypohyal bone +relationship: connects UBERON:0011611 ! ceratohyal bone +relationship: connects UBERON:2000300 ! ventral hypohyal bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001845 +name: dorsal hypohyal-ventral hypohyal joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the dorsal hypohyal and ventral hypohyal bones. Dorsal hypohyal-ventral hypohyal joint is paired." [TAO:wd] +xref: ZFA:0005458 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:2000196 ! dorsal hypohyal bone +intersection_of: connects UBERON:2000300 ! ventral hypohyal bone +relationship: connects UBERON:2000196 ! dorsal hypohyal bone +relationship: connects UBERON:2000300 ! ventral hypohyal bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001846 +name: inter-ventral hypohyal joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the contralateral ventral hypohyal bones or the contralateral ceratobranchial cartilages. Inter-ventral hypohyal joint is paired." [TAO:wd] +xref: ZFA:0005476 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0011610 ! ceratohyal cartilage +intersection_of: connects UBERON:2000300 ! ventral hypohyal bone +relationship: connects UBERON:0011610 ! ceratohyal cartilage +relationship: connects UBERON:2000300 ! ventral hypohyal bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001847 +name: dorsal hypohyal-urohyal joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the dorsal hypohyal and urohyal bones. Dorsal hypohyal-urohyal joint is paired." [TAO:wd] +xref: ZFA:0005457 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0011610 ! ceratohyal cartilage +intersection_of: connects UBERON:2000196 ! dorsal hypohyal bone +intersection_of: connects UBERON:2000452 ! urohyal +relationship: connects UBERON:0011610 ! ceratohyal cartilage +relationship: connects UBERON:2000196 ! dorsal hypohyal bone +relationship: connects UBERON:2000452 ! urohyal +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001848 +name: ventral hypohyal-urohyal joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the ventral hypohyal and urohyal bones. Ventral hypohyal-urohyal joint is paired." [TAO:wd] +xref: ZFA:0005487 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:2000300 ! ventral hypohyal bone +intersection_of: connects UBERON:2000452 ! urohyal +relationship: connects UBERON:2000300 ! ventral hypohyal bone +relationship: connects UBERON:2000452 ! urohyal +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001849 +name: epihyal-branchiostegal ray joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the epihyal and branchiostegal ray bones. Epihyal-branchiostegal ray joint is paired." [TAO:wd] +xref: ZFA:0005498 +is_a: UBERON:0000982 ! skeletal joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001850 +name: ceratohyal-branchiostegal ray joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the ceratohyal and branchiostegal ray bones. Ceratohyal-branchiostegal ray joint is paired." [TAO:wd] +xref: ZFA:0005465 +is_a: UBERON:0000982 ! skeletal joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001852 +name: postcleithrum 1 +namespace: uberon/phenoscape-anatomy +def: "Postcleithrum that anteriorly articulates with the supracleithrum and/or the cleithrum of the pectoral girdle; most dorsal element in a series of postcleithra." [TAO:GA_TG, TAO:wd] +is_a: UBERON:2000410 ! postcleithrum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001853 +name: postcleithrum 2 +namespace: uberon/phenoscape-anatomy +def: "Postcleithrum that articulates dorsally with postcleithrum 1, ventrally with postcleithrum 3, and anteriorly with cleithrum." [TAO:GA_TG, TAO:wd] +is_a: UBERON:2000410 ! postcleithrum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001854 +name: postcleithrum 3 +namespace: uberon/phenoscape-anatomy +def: "Postcleithrum that articulates dorsally with postcleithrum 2 and, sometimes, anteriorly with cleithrum." [TAO:GA_TG, TAO:wd] +is_a: UBERON:2000410 ! postcleithrum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001855 +name: hyomandibular condyle for the opercle +namespace: uberon/phenoscape-anatomy +def: "Process on the dorso-posterior margin of the hyomandibula cartilage or bone that articulates with a depression on the antero-dorsal margin of the opercle." [TAO:wd] +synonym: "opercular process of hyomandibular" EXACT [TAO:0001855] +is_a: UBERON:0009979 ! condyle +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0011607 ! hyomandibular cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001856 +name: gill ray +namespace: uberon/phenoscape-anatomy +def: "Gill ray is a slender, usually rod-like cartilage within a gill filament and ligamentously tied to its associated pharyngeal arch bone or cartilage." [TAO:wd] +xref: ZFA:0005390 +is_a: UBERON:0011004 ! pharyngeal arch cartilage +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001857 +name: hyoidean artery +namespace: uberon/phenoscape-anatomy +def: "An artery that passes along the ventral portions of the hyoid arch; supplies oxygenated blood to the pseudobranch." [TAO:wd] +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0003469 ! respiratory system artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004467 ! musculature of pharynx +relationship: part_of UBERON:0011150 ! pharyngeal arch derived gill +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001858 +name: suprapharyngobranchial +namespace: uberon/phenoscape-anatomy +def: "A pharyngobranchial bone that articulates with the neurocranium dorsally and epibranchial 1 and pharyngobranchial 2 ventrally; lies dorsal to other elements of the dorsal portions of the branchial arches." [TAO:wd] +comment: Articulates with the exoccipital or prootic depending on taxon. +synonym: "branchial spiracle" EXACT [TAO:0001858] +is_a: UBERON:2000527 ! pharyngobranchial bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001859 +name: pharyngobranchial 1 tooth plate +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal tooth plate that lies ventral to pharyngobranchial 1 bone." [TAO:wd] +synonym: "pharyngobranchial 1 toothplate" EXACT [TAO:0001859] +is_a: UBERON:2002015 ! pharyngobranchial tooth plate +relationship: part_of UBERON:2001228 ! pharyngeal arch 3 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001860 +name: epibranchial 4-upper pharyngeal toothplate joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the epibranchial 4 cartilage or bone and upper pharyngeal toothplate. Epibranchial 4-upper pharyngeal toothplate joint is paired." [TAO:wd] +is_a: UBERON:0000982 ! skeletal joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001861 +name: epibranchial 3-pharyngobranchial 3 joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the epibranchial 3 cartilage or bone and pharyngobranchial 3 cartilage or bone. Epibranchial 3-pharyngobranchial 3 joint is paired." [TAO:wd] +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:2001247 ! epibranchial 3 bone +intersection_of: connects UBERON:2001252 ! pharyngobranchial 3 bone +intersection_of: connects UBERON:2001529 ! epibranchial 3 cartilage +intersection_of: connects UBERON:2001534 ! pharyngobranchial 3 cartilage +relationship: connects UBERON:2001247 ! epibranchial 3 bone +relationship: connects UBERON:2001252 ! pharyngobranchial 3 bone +relationship: connects UBERON:2001529 ! epibranchial 3 cartilage +relationship: connects UBERON:2001534 ! pharyngobranchial 3 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001862 +name: epibranchial 3-pharyngobranchial 4 joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the epibranchial 3 cartilage or bone and pharyngobranchial 4 cartilage or bone. Epibranchial 3-pharyngobranchial 4 joint is paired." [TAO:wd] +is_a: UBERON:0000982 ! skeletal joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001863 +name: inter-hypobranchial 3 joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the left and right hypobranchial 3 cartilages or bones. Inter-hypobranchial 3 joint is unpaired." [TAO:wd] +xref: ZFA:0005474 +is_a: UBERON:0000982 ! skeletal joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001864 +name: basibranchial 1 cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 1 (pharyngeal arch 3)." [TAO:wd] +is_a: UBERON:0013747 ! basibranchial cartilage +is_a: UBERON:2001915 ! basibranchial 1 element +intersection_of: UBERON:2001915 ! basibranchial 1 element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:2001221 ! anterior copula +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001865 +name: basibranchial 4 cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 4 (pharyngeal arch 6)." [TAO:wd] +is_a: UBERON:0013747 ! basibranchial cartilage +is_a: UBERON:2001918 ! basibranchial 4 element +intersection_of: UBERON:2001918 ! basibranchial 4 element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:2001222 ! posterior copula +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001866 +name: basibranchial 5 cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 5 (pharyngeal arch 7)." [TAO:wd] +is_a: UBERON:0013747 ! basibranchial cartilage +is_a: UBERON:2001919 ! basibranchial 5 element +intersection_of: UBERON:2001919 ! basibranchial 5 element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:2001222 ! posterior copula +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001867 +name: post-ceratobranchial cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal arch cartilage that is ventral, median, and at or posterior to the juncture of the bilaterally paired ceratobranchial 5 cartilage or bone." [TAO:wd] +synonym: "basibranchial 6" EXACT [TAO:0001867] +synonym: "copula 4" EXACT [TAO:0001867] +synonym: "pericardial cartilage" EXACT [TAO:0001867] +is_a: UBERON:0011004 ! pharyngeal arch cartilage +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001869 +name: supraneural 2 cartilage +namespace: uberon/phenoscape-anatomy +def: "Postcranial axial cartilage located dorsal to vertebra 2." [TAO:wd] +is_a: UBERON:4300036 ! supraneural cartilage +is_a: UBERON:4300214 ! supraneural 2 element +intersection_of: UBERON:4300214 ! supraneural 2 element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001870 +name: supraneural 3 cartilage +namespace: uberon/phenoscape-anatomy +def: "Postcranial axial cartilage located dorsal to vertebrae 3 and 4." [TAO:wd] +is_a: UBERON:4300036 ! supraneural cartilage +is_a: UBERON:4300215 ! supraneural 3 element +intersection_of: UBERON:4300215 ! supraneural 3 element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001871 +name: Weberian ossicle set +namespace: uberon/phenoscape-anatomy +def: "Anatomical cluster that consists of the Weberian ossicles." [TAO:wd] +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:2001188 ! Weberian apparatus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001872 +name: trunk sensory canal system +namespace: uberon/phenoscape-anatomy +def: "Lateral line system on trunk." [TAO:wd] +is_a: UBERON:0002540 ! lateral line system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001873 +name: head sensory canal system +namespace: uberon/phenoscape-anatomy +def: "Lateral line system on head and pectoral girdle." [TAO:wd] +synonym: "cephalic sensory canal system" EXACT [TAO:0001873] +xref: ZFA:0005391 +is_a: UBERON:0002540 ! lateral line system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001874 +name: basibranchial 2 cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 2 (pharyngeal arch 4)." [TAO:wd] +is_a: UBERON:0013747 ! basibranchial cartilage +is_a: UBERON:2001916 ! basibranchial 2 element +intersection_of: UBERON:2001916 ! basibranchial 2 element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:2001221 ! anterior copula +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001875 +name: opercular series +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000477 ! anatomical cluster +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001876 +name: basibranchial 3 cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 3 (pharyngeal arch 5)." [TAO:wd] +is_a: UBERON:0013747 ! basibranchial cartilage +is_a: UBERON:2001917 ! basibranchial 3 element +intersection_of: UBERON:2001917 ! basibranchial 3 element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:2001221 ! anterior copula +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001877 +name: neural arch 1 +namespace: uberon/phenoscape-anatomy +def: "Neural arch that is the anteriormost neural arch." [TAO:wd] +is_a: UBERON:0003861 ! neural arch +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001878 +name: rib of vertebra 2 +namespace: uberon/phenoscape-anatomy +def: "Rib that articulates with the parapophysis of the second centrum." [TAO:wd] +xref: ZFA:0005539 +is_a: UBERON:0002228 ! rib +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001879 +name: rib of vertebra 1 +namespace: uberon/phenoscape-anatomy +def: "Rib that articulates with the parapophysis of the first centrum." [TAO:wd] +xref: ZFA:0005538 +is_a: UBERON:0002228 ! rib +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001880 +name: rib of vertebra 3 +namespace: uberon/phenoscape-anatomy +def: "Rib that articulates with the parapophysis of the third centrum." [TAO:wd] +xref: ZFA:0005540 +is_a: UBERON:0002228 ! rib +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001881 +name: rib of vertebra 4 +namespace: uberon/phenoscape-anatomy +def: "Rib that articulates with the parapophysis of the fourth centrum." [TAO:wd] +xref: ZFA:0005541 +is_a: UBERON:0002228 ! rib +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001882 +name: parapophysis + rib of vertebra 3 +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0002513 ! endochondral bone +relationship: part_of UBERON:2001169 ! vertebral element 3 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001883 +name: parapophysis + rib of vertebra 3 + rib of vertebra 4 +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0002513 ! endochondral bone +relationship: part_of UBERON:2001169 ! vertebral element 3 +relationship: part_of UBERON:2001170 ! vertebral element 4 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001884 +name: accessory neural arch +namespace: uberon/phenoscape-anatomy +def: "Neural arch that is located posterior to the neurocranium and anterior to neural arch 1. The accessory neural arch is not associated with a vertebral centrum." [TAO:wd] +comment: Definition from de Pinna and Grande (2003). +is_a: UBERON:0003861 ! neural arch +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001885 +name: neural spine 1 +namespace: uberon/phenoscape-anatomy +def: "Neural spine that is associated with the first vertebra." [TAO:wd] +is_a: UBERON:0001076 ! neural spine +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001886 +name: neural spine 2 +namespace: uberon/phenoscape-anatomy +def: "Neural spine that is associated with the second vertebra." [TAO:wd] +is_a: UBERON:0001076 ! neural spine +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001887 +name: neural spine 3 +namespace: uberon/phenoscape-anatomy +def: "Neural spine that is associated with the third vertebra." [TAO:wd] +is_a: UBERON:0001076 ! neural spine +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001888 +name: supraneural 1 bone +namespace: uberon/phenoscape-anatomy +def: "Supraneural bone located dorsal to vertebra 1." [TAO:wd] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:2000442 ! supraneural bone +is_a: UBERON:4300213 ! supraneural 1 element +intersection_of: UBERON:4300213 ! supraneural 1 element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2001889 ! supraneural 1 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001889 +name: supraneural 1 cartilage +namespace: uberon/phenoscape-anatomy +def: "Postcranial axial cartilage located dorsal to vertebra 1." [TAO:wd] +is_a: UBERON:4300036 ! supraneural cartilage +is_a: UBERON:4300213 ! supraneural 1 element +intersection_of: UBERON:4300213 ! supraneural 1 element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001892 +name: interhyal element +namespace: uberon/phenoscape-anatomy +def: "Skeletal element that is bilaterally paired and articulates dorsally with the hyosymplectic cartilage or the articulation of the hyomandibula and symplectic." [TAO:wd] +synonym: "stylohyal" RELATED [] +synonym: "stylohyal element" EXACT [] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0011153 ! ventral hyoid arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001893 +name: hypobranchial element +namespace: uberon/phenoscape-anatomy +def: "Skeletal element that is bilaterally paired and articulates medially with a median skeletal element and laterally with a ceratobranchial element." [TAO:wd] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001894 +name: hypobranchial 1 element +namespace: uberon/phenoscape-anatomy +def: "Skeletal element that is ventral, bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 1 element laterally." [TAO:wd] +is_a: UBERON:2001893 ! hypobranchial element +relationship: part_of UBERON:2001228 ! pharyngeal arch 3 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001895 +name: hypobranchial 2 element +namespace: uberon/phenoscape-anatomy +def: "Skeletal element that is ventral, bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 2 element laterally." [TAO:wd] +is_a: UBERON:2001893 ! hypobranchial element +relationship: part_of UBERON:2001231 ! pharyngeal arch 4 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001896 +name: hypobranchial 3 element +namespace: uberon/phenoscape-anatomy +def: "Skeletal element that is ventral, bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 3 element laterally." [TAO:wd] +is_a: UBERON:2001893 ! hypobranchial element +relationship: part_of UBERON:2001232 ! pharyngeal arch 5 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001897 +name: hypobranchial 4 element +namespace: uberon/phenoscape-anatomy +def: "Skeletal element that is ventral, bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 4 element laterally." [TAO:wd] +is_a: UBERON:2001893 ! hypobranchial element +relationship: part_of UBERON:2001230 ! pharyngeal arch 6 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001898 +name: ceratobranchial element +namespace: uberon/phenoscape-anatomy +def: "Skeletal element that is bilaterally paired and forms part of the ventral branchial arches." [TAO:wd] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:2002103 ! ceratobranchial series +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001899 +name: ceratobranchial 1 element +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2001898 ! ceratobranchial element +relationship: part_of UBERON:2001228 ! pharyngeal arch 3 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001900 +name: ceratobranchial 2 element +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2001898 ! ceratobranchial element +relationship: part_of UBERON:2001231 ! pharyngeal arch 4 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001901 +name: ceratobranchial 3 element +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2001898 ! ceratobranchial element +relationship: part_of UBERON:2001232 ! pharyngeal arch 5 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001902 +name: ceratobranchial 4 element +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2001898 ! ceratobranchial element +relationship: part_of UBERON:2001230 ! pharyngeal arch 6 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001903 +name: ceratobranchial 5 element +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2001898 ! ceratobranchial element +relationship: part_of UBERON:2001229 ! pharyngeal arch 7 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001904 +name: epibranchial element +namespace: uberon/phenoscape-anatomy +def: "Skeletal element that is bilaterally paired and articulates laterally with ceratobranchial element." [TAO:wd] +synonym: "epibranchial elements" EXACT PLURAL [TAO:0001904] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:2002102 ! epibranchial series +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001905 +name: epibranchial 1 element +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2001904 ! epibranchial element +relationship: part_of UBERON:2001228 ! pharyngeal arch 3 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001906 +name: epibranchial 2 element +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2001904 ! epibranchial element +relationship: part_of UBERON:2001231 ! pharyngeal arch 4 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001907 +name: epibranchial 3 element +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2001904 ! epibranchial element +relationship: part_of UBERON:2001232 ! pharyngeal arch 5 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001908 +name: epibranchial 4 element +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2001904 ! epibranchial element +relationship: part_of UBERON:2001230 ! pharyngeal arch 6 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001909 +name: pharyngobranchial element +namespace: uberon/phenoscape-anatomy +def: "Skeletal element of the branchial arches located medial to the epibranchials." [TAO:wd] +synonym: "infrapharyngobranchial element" EXACT [] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001910 +name: pharyngobranchial 1 element +namespace: uberon/phenoscape-anatomy +def: "Most anterior pharyngobranchial element, located medial to the epibranchials." [TAO:wd] +synonym: "infrapharyngobranchial 1 element" EXACT [] +is_a: UBERON:2001909 ! pharyngobranchial element +relationship: part_of UBERON:2001228 ! pharyngeal arch 3 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001911 +name: pharyngobranchial 2 element +namespace: uberon/phenoscape-anatomy +def: "Pharyngobranchial element, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 1 element." [TAO:wd] +synonym: "infrapharyngobranchial 2 element" EXACT [] +is_a: UBERON:2001909 ! pharyngobranchial element +relationship: part_of UBERON:2001231 ! pharyngeal arch 4 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001912 +name: pharyngobranchial 3 element +namespace: uberon/phenoscape-anatomy +def: "Pharyngobranchial element, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 2 element." [TAO:wd] +synonym: "infrapharyngobranchial 3 element" EXACT [] +is_a: UBERON:2001909 ! pharyngobranchial element +relationship: part_of UBERON:2001232 ! pharyngeal arch 5 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001913 +name: pharyngobranchial 4 element +namespace: uberon/phenoscape-anatomy +def: "Most posterior pharyngobranchial element, located medial to the epibranchials." [TAO:wd] +synonym: "infrapharyngobranchial 4 element" EXACT [] +synonym: "infrapharyngobranchial 4 element" RELATED [TAO:0001913] +is_a: UBERON:2001909 ! pharyngobranchial element +relationship: part_of UBERON:2001230 ! pharyngeal arch 6 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001914 +name: obsolete basibranchial element +namespace: uberon/phenoscape-anatomy +def: "Endochondral element that is ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton." [TAO:wd] +is_obsolete: true +replaced_by: UBERON:0004740 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001915 +name: basibranchial 1 element +namespace: uberon/phenoscape-anatomy +def: "Skeletal element that is median and associated with branchial arch 1." [TAO:wd] +is_a: UBERON:0013746 ! basibranchial element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001916 +name: basibranchial 2 element +namespace: uberon/phenoscape-anatomy +def: "Skeletal element that is median and associated with branchial arch 2." [TAO:wd] +is_a: UBERON:0013746 ! basibranchial element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001917 +name: basibranchial 3 element +namespace: uberon/phenoscape-anatomy +def: "Skeletal element that is median and associated with branchial arch 3." [TAO:wd] +is_a: UBERON:0013746 ! basibranchial element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001918 +name: basibranchial 4 element +namespace: uberon/phenoscape-anatomy +def: "Skeletal element that is median and associated with branchial arch 4." [TAO:wd] +is_a: UBERON:0013746 ! basibranchial element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001919 +name: basibranchial 5 element +namespace: uberon/phenoscape-anatomy +def: "Skeletal element that is median and associated with branchial arch 5." [TAO:wd] +is_a: UBERON:0013746 ! basibranchial element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001920 +name: pseudotympanum +namespace: uberon/phenoscape-anatomy +def: "Anatomical structure that is formed as a hiatus in the muscles covering the anterior chamber of the swim bladder in the area of ribs 5 and 6." [TAO:wd] +synonym: "humeral hiatus" EXACT [TAO:0001920] +is_a: UBERON:0000481 ! multi-tissue structure +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001921 +name: adipose eyelid +namespace: uberon/phenoscape-anatomy +def: "Surface structure that is a fleshy membrane covering part of the eye." [TAO:wd] +is_a: UBERON:0003102 ! surface structure +relationship: part_of UBERON:0000033 ! head +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001922 +name: inter-frontal joint +namespace: uberon/phenoscape-anatomy +def: "Joint between the left and right frontal bone." [TAO:wd] +synonym: "interfrontal suture" EXACT [ZFIN:ZDB-PUB-060323-12] +synonym: "metopic suture" RELATED [ZFIN:ZDB-PUB-060323-12] +xref: ZFA:0005472 +is_a: UBERON:0000982 ! skeletal joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001923 +name: aortic canal +namespace: uberon/phenoscape-anatomy +def: "Canal that houses the dorsal aorta." [TAO:wd] +is_a: UBERON:0005744 ! bone foramen +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001924 +name: occipital artery foramen +namespace: uberon/phenoscape-anatomy +def: "Foramina that allow passage of occipital arteries." [TAO:wd] +is_a: UBERON:0005744 ! bone foramen +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001925 +name: spiracular canal +namespace: uberon/phenoscape-anatomy +def: "Foramen for passage of nerve supplying otic lateral line." [TAO:wd] +is_a: UBERON:0005744 ! bone foramen +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001926 +name: posterior myodome +namespace: uberon/phenoscape-anatomy +def: "Fossa or chamber on posterior portion of orbital region of neurocranium that serves as attachment site for posterior extrinsic eye muscles." [TAO:wd] +is_a: UBERON:0004704 ! bone fossa +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001927 +name: anterior myodome +namespace: uberon/phenoscape-anatomy +def: "Fossa or chamber on anterior portion of orbital region of neurocranium that serves as attachment site for anterior extrinsic eye musculature." [TAO:wd] +xref: ZFA:0005406 +is_a: UBERON:0004704 ! bone fossa +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001928 +name: articular fossa of opercle +namespace: uberon/phenoscape-anatomy +def: "Fossa of opercle that articulates with hyomandibular condyle for opercle." [TAO:wd] +xref: ZFA:0005442 +is_a: UBERON:0004704 ! bone fossa +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001929 +name: epioccipital posterior process +namespace: uberon/phenoscape-anatomy +def: "Process of the epioccipital that extends posteriorly, is laminar in form and is usually attached to Weberian apparatus." [TAO:wd] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:2001412 ! epiotic +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001930 +name: accessory vomerine tooth plate +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that is located lateral to vomer off midline of palate. Accessory vomerine tooth plate bears teeth and may be present as one or more pairs." [TAO:wd] +comment: Accessory vomerine tooth plate is not synonymous with dermopalatine tooth plate, palatine tooth plate, or pterygoid tooth plate. +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0011164 ! neurocranium bone +relationship: part_of UBERON:0003112 ! olfactory region +relationship: part_of UBERON:0003113 ! dermatocranium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001931 +name: infranuchal scute +namespace: uberon/phenoscape-anatomy +def: "Scute that is an elongated plate associated with a ligament running between posterior nuchal plate and rib on vertebra 6. Infranuchal scute is paired and develops from its associated ligament and sensory canal tubular ossicle." [TAO:wd] +is_a: UBERON:2002294 ! fish scute +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001932 +name: sensory canal tubular ossicle +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that is ring-shaped or cylindrical and surrounds a sensory canal." [TAO:wd] +xref: ZFA:0005511 +is_a: UBERON:0008907 ! dermal bone +relationship: surrounds UBERON:2001612 ! sensory canal +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001933 +name: sensory canal tubule +namespace: uberon/phenoscape-anatomy +def: "Sensory canal that is a side branch between a sensory canal proximally and a pore at its distal end. Sensory canal tubule is bilaterally paired although often imperfectly so." [TAO:wd] +xref: ZFA:0005447 +is_a: UBERON:2001612 ! sensory canal +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001934 +name: rostral plate +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that is located on midline of snout in skin above mesethmoid and lateral ethmoid bones. Rostral plate bears type 1 odontodes and is unpaired." [TAO:wd] +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0011164 ! neurocranium bone +relationship: part_of UBERON:0003112 ! olfactory region +relationship: part_of UBERON:0003113 ! dermatocranium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001935 +name: oral disk +namespace: uberon/phenoscape-anatomy +def: "Lip that is expanded to form a broad, rounded cup around the mouth." [TAO:wd] +is_a: UBERON:0001833 ! lip +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001936 +name: posterior nasal barbel +namespace: uberon/phenoscape-anatomy +def: "Barbel that is attached to the anterior rim of the posterior nostril. Posterior nasal barbel is paired." [TAO:wd] +is_a: UBERON:4300287 ! nasal barbel +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001937 +name: anterior nasal barbel +namespace: uberon/phenoscape-anatomy +def: "Barbel that is associated with the anterior nostril. Anterior nasal barbel is paired." [TAO:wd] +xref: ZFA:0005407 +is_a: UBERON:4300287 ! nasal barbel +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001938 +name: maxillary barbel +namespace: uberon/phenoscape-anatomy +def: "Barbel that is attached to the distal end of the maxilla and that originates on the side of the mouth. Maxillary barbel is paired." [TAO:wd] +xref: ZFA:0005408 +is_a: UBERON:2000622 ! barbel +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001939 +name: inter-basipterygium joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the left and right basipterygium cartilage or bone. Inter-basipterygium joint is unpaired." [TAO:wd] +synonym: "pelvic girdle symphysis" EXACT [TAO:0001939] +synonym: "pelvic symphysis" EXACT [TAO:0001939] +xref: ZFA:0005471 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:2100623 ! basipterygium element +relationship: connects UBERON:2100623 ! basipterygium element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001940 +name: vertebra 4-vertebra 5 joint +namespace: uberon/phenoscape-anatomy +def: "Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 4 and vertebra 5." [TAO:wd] +xref: ZFA:0005504 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:2001170 ! vertebral element 4 +intersection_of: connects UBERON:2001732 ! vertebral element 5 +relationship: connects UBERON:2001170 ! vertebral element 4 +relationship: connects UBERON:2001732 ! vertebral element 5 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001941 +name: orbitosphenoid-lateral ethmoid joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the orbitosphenoid cartilage or bone and lateral ethmoid cartilage or bone. Orbitosphenoid-lateral ethmoid joint is paired." [TAO:wd] +xref: ZFA:0005479 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0002478 ! orbitosphenoid +intersection_of: connects UBERON:2000226 ! lateral ethmoid bone +relationship: connects UBERON:0002478 ! orbitosphenoid +relationship: connects UBERON:2000226 ! lateral ethmoid bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001942 +name: autopalatine-maxillary joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the autopalatine cartilage or bone and maxilla." [TAO:wd] +xref: ZFA:0005421 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0002397 ! maxilla +intersection_of: connects UBERON:2000620 ! autopalatine +relationship: connects UBERON:0002397 ! maxilla +relationship: connects UBERON:2000620 ! autopalatine +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001943 +name: metapterygoid-autopalatine ligament +namespace: uberon/phenoscape-anatomy +def: "Ligament that connects the metapterygoid to the autopalatine." [TAO:wd] +is_a: UBERON:0008846 ! skeletal ligament +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001944 +name: lateral ethmoid-autopalatine ligament +namespace: uberon/phenoscape-anatomy +def: "Lateral ethmoid-autopalatine ligament is a ligament that connects the lateral ethmoid to the autopalatine." [TAO:wd] +xref: ZFA:0005502 +is_a: UBERON:0008846 ! skeletal ligament +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001945 +name: mesethmoid-premaxillary ligament +namespace: uberon/phenoscape-anatomy +def: "Mesethmoid-premaxillary ligament is a ligament that connects the mesethmoid to the premaxilla." [TAO:wd] +is_a: UBERON:0008846 ! skeletal ligament +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001946 +name: mesethmoid-maxillary ligament +namespace: uberon/phenoscape-anatomy +def: "Mesethmoid-maxillary ligament is a ligament that connects the mesethmoid to the maxilla." [TAO:wd] +is_a: UBERON:0008846 ! skeletal ligament +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001947 +name: hyomandibular-otic region joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the hyomandibular cartilage or bone and otic region cartilage or sphenotic bone, and often pterotic bone and prootic bone. Hyomandibular-otic region joint is paired." [TAO:wd] +xref: ZFA:0005544 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0003110 ! otic region +intersection_of: connects UBERON:0011606 ! hyomandibular bone +relationship: connects UBERON:0003110 ! otic region +relationship: connects UBERON:0011606 ! hyomandibular bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001948 +name: anal fin hook +namespace: uberon/phenoscape-anatomy +def: "Process that is part of the anal fin lepidotrichium." [TAO:wd] +synonym: "anal-fin hook" EXACT [TAO:0001948] +is_a: UBERON:4300284 ! fin hook +relationship: part_of UBERON:4000176 ! anal fin lepidotrichium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001949 +name: caudal fin hook +namespace: uberon/phenoscape-anatomy +def: "Process that is part of the caudal fin lepidotrichium." [TAO:wd] +comment: Caudal fin hook is found in some characiform fishes. +synonym: "caudal-fin hook" EXACT [TAO:0001949] +is_a: UBERON:4300284 ! fin hook +relationship: part_of UBERON:4000174 ! caudal fin lepidotrichium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001950 +name: inter-premaxillary joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the left and right premaxillary bones. Inter-premaxillary joint is unpaired." [TAO:wd] +xref: ZFA:0005475 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0002244 ! premaxilla +relationship: connects UBERON:0002244 ! premaxilla +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001951 +name: skin flap +namespace: uberon/phenoscape-anatomy +def: "Surface structure that is a portion of skin that projects or hangs from the body." [TAO:wd] +xref: ZFA:0005495 +is_a: UBERON:3000961 ! external integument structure +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001952 +name: dentary tooth row +namespace: uberon/phenoscape-anatomy +def: "Tooth row that is on the dentary." [TAO:wd] +is_a: UBERON:0009678 ! tooth row +relationship: has_member UBERON:0011594 ! dentary tooth +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001953 +name: obsolete cranial muscle +namespace: uberon/phenoscape-anatomy +is_obsolete: true +replaced_by: UBERON:0002376 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001955 +name: obsolete pigmentation +namespace: uberon/phenoscape-anatomy +synonym: "body pigmentation" RELATED [TAO:0001955] +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001956 +name: epibranchial 1 bone proximal cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal cartilage that is part of and at the proximal end of epibranchial 1 bone, and that usually articulates with a pharyngobranchial element. Epibranchial 1 bone proximal cartilage is paired." [TAO:wd] +synonym: "epibranchial 1 anterior cartilage" EXACT [TAO:0001956] +synonym: "epibranchial 1 mesial cartilage" EXACT [TAO:0001956] +is_a: UBERON:0011004 ! pharyngeal arch cartilage +relationship: part_of UBERON:2001243 ! epibranchial 1 bone +relationship: part_of UBERON:2001528 ! epibranchial 1 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001957 +name: epibranchial 2 bone proximal cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal cartilage that is part of and at the proximal end of epibranchial 2 bone, and that usually articulates with a pharyngobranchial element. Epibranchial 2 bone proximal cartilage is paired." [TAO:w] +synonym: "epibranchial 2 anterior cartilage" EXACT [TAO:0001957] +synonym: "epibranchial 2 mesial cartilage" EXACT [TAO:0001957] +is_a: UBERON:0011004 ! pharyngeal arch cartilage +relationship: part_of UBERON:2001246 ! epibranchial 2 bone +relationship: part_of UBERON:2001530 ! epibranchial 2 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001958 +name: ceratobranchial 3 bone distal cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharynbeal cartilage that is part of and at the distal end of ceratobranchial 3 bone, and that usually articulates with epibranchial 3 element. Ceratobranchial 3 bone distal cartilage is paired." [TAO:wd] +synonym: "ceratobranchial 3 bone lateral cartilage" EXACT [TAO:0001958] +synonym: "ceratobranchial 3 bone posterior cartilage" EXACT [TAO:0001958] +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:4000003 ! permanent cartilage +relationship: part_of UBERON:2001241 ! ceratobranchial 3 bone +relationship: part_of UBERON:2001518 ! ceratobranchial 3 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001959 +name: ceratobranchial 4 bone proximal cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal cartilage that is part of and at the proximal end of ceratobranchial 4 bone, and that usually articulates with basibranchial 4 element. Ceratobranchial 4 proximal cartilage is paired." [TAO:wd] +synonym: "ceratobranchial 4 bone anterior cartilage" EXACT [TAO:0001959] +synonym: "ceratobranchial 4 bone mesial cartilage" EXACT [TAO:0001959] +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:4000003 ! permanent cartilage +relationship: part_of UBERON:2001240 ! ceratobranchial 4 bone +relationship: part_of UBERON:2001519 ! ceratobranchial 4 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001960 +name: ceratobranchial 4 bone distal cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal cartilage that is part of and at the distal end of ceratobranchial 4 bone, and that usually articulates with epibranchial 4 element. Ceratobranchial 4 distal cartilage is paired." [TAO:wd] +synonym: "ceratobranchial 4 bone lateral cartilage" EXACT [TAO:0001960] +synonym: "ceratobranchial 4 bone posterior cartilage" EXACT [TAO:0001960] +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:4000003 ! permanent cartilage +relationship: part_of UBERON:2001240 ! ceratobranchial 4 bone +relationship: part_of UBERON:2001519 ! ceratobranchial 4 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001961 +name: ceratobranchial 5 bone distal cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal cartilage that is part of and at the distal end of ceratobranchial 5 bone. Ceratobranchial 5 bone distal cartilage is paired." [TAO:wd] +synonym: "ceratobranchial 5 bone lateral cartilage" EXACT [TAO:0001961] +synonym: "ceratobranchial 5 bone posterior cartilage" EXACT [TAO:0001961] +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:4000003 ! permanent cartilage +relationship: part_of UBERON:2001239 ! ceratobranchial 5 bone +relationship: part_of UBERON:2001521 ! ceratobranchial 5 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001962 +name: hypobranchial 1 bone distal cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal cartilage that is part of and at the distal end of hypobranchial 1 bone, and that usually articulates with ceratobranchial 1 element. Hypobranchial 1 bone distal cartilage is paired." [TAO:wd] +synonym: "hypobranchial 1 bone lateral cartilage" EXACT [TAO:0001962] +synonym: "hypobranchial 1 bone posterior cartilage" EXACT [TAO:0001962] +is_a: UBERON:0011004 ! pharyngeal arch cartilage +relationship: part_of UBERON:2001233 ! hypobranchial 1 bone +relationship: part_of UBERON:2001524 ! hypobranchial 1 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001963 +name: hypobranchial 2 bone distal cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal cartilage that is part of and at the distal end of hypobranchial 2 bone, and that usually articulates with ceratobranchial 2 element. Hypobranchial 2 bone distal cartilage is paired." [TAO:wd] +synonym: "hypobranchial 2 bone lateral cartilage" EXACT [TAO:0001963] +synonym: "hypobranchial 2 bone posterior cartilage" EXACT [TAO:0001963] +is_a: UBERON:0011004 ! pharyngeal arch cartilage +relationship: part_of UBERON:2001236 ! hypobranchial 2 bone +relationship: part_of UBERON:2001525 ! hypobranchial 2 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001964 +name: epibranchial 3 bone uncinate process cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal cartilage that is part of and at the distal end of epibranchial bone 3 uncinate process. epibranchial bone 3 uncinate process cartilage is paired." [TAO:wd] +is_a: UBERON:0011004 ! pharyngeal arch cartilage +relationship: part_of UBERON:2001822 ! epibranchial 3 bone uncinate process +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001965 +name: epibranchial 4 bone uncinate process cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal cartilage that is part of and at the distal end of epibranchial bone 4 uncinate process. Epibranchial bone 4 uncinate process cartilage is paired." [TAO:wd] +is_a: UBERON:0011004 ! pharyngeal arch cartilage +relationship: part_of UBERON:2001823 ! epibranchial 4 bone uncinate process +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001966 +name: epibranchial 5 element +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2001904 ! epibranchial element +relationship: part_of UBERON:2001229 ! pharyngeal arch 7 skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001967 +name: obsolete orbit +namespace: uberon/phenoscape-anatomy +comment: Obsoleted as we redundant with other classes. See https://github.com/obophenotype/uberon/issues/462 +is_obsolete: true +consider: ZFA:0005558 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001968 +name: outer mental barbel +namespace: uberon/phenoscape-anatomy +def: "Mental barbel that originates on the chin, in a posterolateral position relative to the inner mental barbel." [TAO:wd] +is_a: UBERON:2002024 ! mental barbel +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001969 +name: inner mental barbel +namespace: uberon/phenoscape-anatomy +def: "Mental barbel that originates on the chin, in an anteromedial position relative to the outer mental barbel. The inner mental barbel is nearer to the mandibular symphysis than is the outer mental barbel." [TAO:wd] +xref: ZFA:0005508 +is_a: UBERON:2002024 ! mental barbel +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001971 +name: parapophysis 4 +namespace: uberon/phenoscape-anatomy +def: "Parapophysis that is the lateral projection from the fourth centrum. Parapophysis 4 is bilaterally paired." [TAO:wd] +is_a: UBERON:0003109 ! parapophysis +relationship: part_of UBERON:2001170 ! vertebral element 4 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001972 +name: intercostal ligament +namespace: uberon/phenoscape-anatomy +def: "Ligament that connects one rib to another." [TAO:wd] +xref: ZFA:0005637 +is_a: UBERON:0008846 ! skeletal ligament +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001974 +name: subtemporal fossa +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005454 +is_a: UBERON:0004704 ! bone fossa +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001975 +name: suprabranchial artery +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0001637 ! artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001976 +name: interorbital septum +namespace: uberon/phenoscape-anatomy +def: "Anatomical cluster composed of one or more bones and tissue that separates the orbits." [TAO:wd] +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0000033 ! head +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001977 +name: pad +namespace: uberon/phenoscape-anatomy +def: "Surface structure that is a portion of the integument thickened relative to surrounding area." [TAO:wd] +synonym: "pads" EXACT PLURAL [TAO:0001977] +is_a: UBERON:3000961 ! external integument structure +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001978 +name: maxillary tooth row +namespace: uberon/phenoscape-anatomy +def: "Tooth row that is on the maxilla." [TAO:wd] +is_a: UBERON:0009678 ! tooth row +relationship: composed_primarily_of UBERON:0011593 ! maxillary tooth +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001979 +name: hyomandibula-metapterygoid joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the hyomandibula bone and metapterygoid bone." [TAO:wd] +xref: ZFA:0005469 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0011606 ! hyomandibular bone +intersection_of: connects UBERON:2000240 ! metapterygoid +relationship: connects UBERON:0011606 ! hyomandibular bone +relationship: connects UBERON:2000240 ! metapterygoid +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001980 +name: vertebral element 6 +namespace: uberon/phenoscape-anatomy +def: "Vertebra that is posteriorly adjacent to vertebra 5." [TAO:wd] +xref: ZFA:0005348 +is_a: UBERON:0010913 ! vertebral element +relationship: overlaps UBERON:2002054 ! vertebra 5-vertebra 6 joint +relationship: overlaps UBERON:2002055 ! vertebra 6 - vertebra 7 joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001981 +name: vertebral element 7 +namespace: uberon/phenoscape-anatomy +def: "Vertebra that is posteriorly adjacent to vertebra 6." [TAO:wd] +xref: ZFA:0005349 +is_a: UBERON:0010913 ! vertebral element +relationship: overlaps UBERON:2002055 ! vertebra 6 - vertebra 7 joint +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001982 +name: vertebral element 8 +namespace: uberon/phenoscape-anatomy +def: "Vertebra that is posteriorly adjacent to vertebra 7." [TAO:wd] +xref: ZFA:0005350 +is_a: UBERON:0010913 ! vertebral element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001983 +name: centrum 1 +namespace: uberon/phenoscape-anatomy +def: "Centrum that is part of vertebra 1." [TAO:wd] +is_a: UBERON:0001075 ! bony vertebral centrum +relationship: part_of UBERON:0001092 ! vertebral bone 1 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001984 +name: centrum 2 +namespace: uberon/phenoscape-anatomy +def: "Centrum that is part of vertebra 2." [TAO:wd] +is_a: UBERON:0001075 ! bony vertebral centrum +relationship: part_of UBERON:0001093 ! vertebral bone 2 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001985 +name: centrum 3 +namespace: uberon/phenoscape-anatomy +def: "Centrum that is part of vertebra 3." [TAO:wd] +is_a: UBERON:0001075 ! bony vertebral centrum +relationship: part_of UBERON:2001169 ! vertebral element 3 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001986 +name: centrum 4 +namespace: uberon/phenoscape-anatomy +def: "Centrum that is part of vertebra 4." [TAO:wd] +is_a: UBERON:0001075 ! bony vertebral centrum +relationship: part_of UBERON:2001170 ! vertebral element 4 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001987 +name: centrum 5 +namespace: uberon/phenoscape-anatomy +def: "Centrum that is part of vertebra 5." [TAO:wd] +is_a: UBERON:0001075 ! bony vertebral centrum +relationship: part_of UBERON:2001732 ! vertebral element 5 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001988 +name: centrum 6 +namespace: uberon/phenoscape-anatomy +def: "Centrum that is part of vertebra 6." [TAO:wd] +is_a: UBERON:0001075 ! bony vertebral centrum +relationship: part_of UBERON:2001980 ! vertebral element 6 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001989 +name: mandibular-hyoid median cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal arch cartilage that is a spherical mass of cartilage located between the mandibular symphysis and ventral hyoid arch. Mandibular-hyoid median cartilage is unpaired." [TAO:wd] +comment: Schaefer, S. 1990. (Anatomy and relationships of the scoloplacid catfishes. Proc. Acad. Nat. Sci. Phil. 142: 167-210) described this structure in certain catfishes and applied the name hyomandibular cartilage. To avoid possible confusion of this structure with the hyomandibular cartilage (or bone) of the suspensorium, the term mandibular-hyoid median cartilage is used here. +synonym: "hyomandibular cartilage sensu Schaefer (1990)" EXACT [TAO:0001989] +is_a: UBERON:0011004 ! pharyngeal arch cartilage +relationship: part_of UBERON:0005884 ! hyoid arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001990 +name: epibranchial arborescent organ +namespace: uberon/phenoscape-anatomy +def: "Anatomical cluster that is an outgrowth of the soft tissue around the dorsolateral corner of a branchial arch that is internally supported by a core of rigid cartilage-like tissue. Epibranchial arborescent organ is paired." [TAO:wd] +comment: Greenwood, P. H. 1961 (A revision of the genus Dinotopterus Blgr. (pisces, Clariidae) with notes on the comparative anatomy of the suprabranchial organs in the Clariidae. Bull. British Mus (Nat. His.), Zool. 7(4): 217-241.) described this structure in certain catfishes and applied the term suprabranchial organ to it. To avoid possible confusion with distinctly different structures bearing the name suprabranchial organs in other teleosts, the term epibranchial arborescent organ is used here following the lead of de Pinna 1993. +synonym: "suprabranchial organ" EXACT [TAO:0001990] +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0001042 ! chordate pharynx +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001991 +name: lateral bone +namespace: uberon/phenoscape-anatomy +def: "Membrane bone extending between a transverse process of the second proximal dorsal-fin radial and the pleural rib of the sixth vertebra. Lateral bone is paired." [TAO:wd] +is_a: UBERON:0007842 ! membrane bone +relationship: part_of UBERON:0002090 ! postcranial axial skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001992 +name: branched anal fin ray +namespace: uberon/phenoscape-anatomy +def: "Anal fin lepidotrichium that is distally branched." [TAO:wd] +synonym: "anal fin branched ray" EXACT [TAO:0001992] +xref: ZFA:0005535 +is_a: UBERON:4500006 ! anal fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001993 +name: branched pectoral fin ray +namespace: uberon/phenoscape-anatomy +def: "Pectoral fin lepidotrichium that is distally branched and segmented." [TAO:wd] +synonym: "pectoral fin branched ray" EXACT [TAO:0001993] +is_a: UBERON:4500007 ! pectoral fin ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001994 +name: gill raker row +namespace: uberon/phenoscape-anatomy +def: "Anatomical cluster that consists of adjacent gill rakers constituting a row and is part of a ceratobranchial or epibranchial element of the branchial arches. Gill raker row is paired." [TAO:wd] +is_a: UBERON:0000477 ! anatomical cluster +intersection_of: UBERON:0000477 ! anatomical cluster +intersection_of: composed_primarily_of UBERON:2000356 ! gill raker +intersection_of: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +relationship: composed_primarily_of UBERON:2000356 ! gill raker +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001995 +name: papilla +namespace: uberon/phenoscape-anatomy +def: "Surface structure that is a small, fleshy protuberance." [TAO:wd] +synonym: "dermal papilla" RELATED [TAO:0001995] +synonym: "papillae" EXACT PLURAL [TAO:0001995] +is_a: UBERON:0003102 ! surface structure +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001996 +name: maxillary canal +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000481 ! multi-tissue structure +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001997 +name: parietal-supraoccipital +namespace: uberon/phenoscape-anatomy +def: "Compound dermal and endochondral bone that results from the fusion of the paired dermal parietal bones and the median endochondral supraoccipital. Forms the dorso-posterior element of the dermatocranium." [TAO:GA_TG] +comment: A parietal-supraoccipital or parieto-supraoccipital bone is an element present in Siluriformes. +synonym: "parieto-supraoccipital" EXACT [TAO:0001997] +synonym: "supraoccipital" BROAD [TAO:0001997] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0008907 ! dermal bone +relationship: develops_from UBERON:0004747 ! supraoccipital bone +relationship: develops_from UBERON:0004865 ! actinopterygian parietal bone +relationship: part_of UBERON:0003113 ! dermatocranium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001998 +name: posttemporal-supracleithrum +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that results from the fusion of the dermal posttemporal and the dermal supracleithrum. Forms the upper skeletal element of the pectoral girdle between the cleithrum and neurocranium. Posttemporal-supracleithrum is paired." [TAO:wd] +comment: A posttemporo-supracleithrum is a bone present in Siluriformes. There are different opinions if this is the result of an ontogenetic or a phylogenetic fusion or the loss or one or other bone. +synonym: "postemporo-supracleithrum" EXACT [TAO:0001998] +synonym: "posttemporal" RELATED [TAO:0001998] +synonym: "posttemporo-supracleithrum" EXACT [TAO:0001998] +synonym: "supracleithrum" RELATED [TAO:0001998] +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0008907 ! dermal bone +relationship: develops_from UBERON:2000549 ! posttemporal +relationship: develops_from UBERON:2000594 ! supracleithrum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2001999 +name: posterior cleithral process +namespace: uberon/phenoscape-anatomy +def: "Process arising from the posterior or postero-dorsal margin of the cleithrum dorsally adjacent to the insertion of the pectoral fin. Posterior cleithral process is paired." [TAO:wd] +synonym: "humeral process" EXACT [TAO:0001999] +synonym: "postcleithral process" EXACT [TAO:0001999] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0004741 ! cleithrum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002000 +name: posterior dentation of pectoral fin spine +namespace: uberon/phenoscape-anatomy +def: "Process that is tooth-like or thorn-like and arising from the posteriorly-facing margin of the abducted pectoral spine." [TAO:wd] +synonym: "pectoral fin spine posterior dentation" EXACT [TAO:0002000] +synonym: "posterior denticle of pectoral fin spine" EXACT [TAO:0002000] +synonym: "posterior serration of pectoral fin spine" EXACT [TAO:0002000] +synonym: "posterior thorn of pectoral fin spine" EXACT [TAO:0002000] +synonym: "posterior tooth of pectoral fin spine" EXACT [TAO:0002000] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2001787 ! pectoral fin spine +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002001 +name: anterior dentation of pectoral fin spine +namespace: uberon/phenoscape-anatomy +def: "Process that is tooth- or thorn-like and arising from the anteriorly-facing margin of the abducted pectoral spine. Anterior dentation of pectoral fin spine is usually present on the proximal and/or middle section of the pectoral fin spine." [TAO:wd] +synonym: "anterior denticle of pectoral fin spine" RELATED [TAO:0002001] +synonym: "anterior serration of pectoral fin spine" RELATED [TAO:0002001] +synonym: "anterior thorn of pectoral fin spine" RELATED [TAO:0002001] +synonym: "anterior tooth of pectoral fin spine" RELATED [TAO:0002001] +synonym: "pectoral fin spine anterior dentation" RELATED [TAO:0002001] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2001787 ! pectoral fin spine +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002002 +name: anterior distal serration of pectoral fin spine +namespace: uberon/phenoscape-anatomy +def: "Process that is retrorse, thorn-like and arising from the anteriorly-facing margin of the abducted pectoral spine. Anterior distal serration of pectoral fin spine is usually present on the distal section of the pectoral fin spine." [TAO:wd] +synonym: "anterior denticle of pectoral fin spine" RELATED [TAO:0002002] +synonym: "anterior serration of pectoral fin spine" RELATED [TAO:0002002] +synonym: "anterior thorn of pectoral fin spine" RELATED [TAO:0002002] +synonym: "anterior tooth of pectoral fin spine" RELATED [TAO:0002002] +synonym: "pectoral fin spine anterior distal serration" RELATED [TAO:0002002] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2001787 ! pectoral fin spine +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002003 +name: posterior dentation of dorsal fin spine 2 +namespace: uberon/phenoscape-anatomy +def: "Process that is tooth or thorn-like and arising from the posteriorly-facing margin of the abducted dorsal-fin spine 2." [TAO:wd] +synonym: "dorsal fin spine 2 posterior dentation" EXACT [TAO:0002003] +synonym: "posterior denticle of dorsal fin spine 2" EXACT [TAO:0002003] +synonym: "posterior serration of dorsal fin spine 2" EXACT [TAO:0002003] +synonym: "posterior thorn of dorsal fin spine 2" EXACT [TAO:0002003] +synonym: "posterior tooth of dorsal fin spine 2" EXACT [TAO:0002003] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2001790 ! dorsal fin spine 2 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002004 +name: anterior dentation of dorsal fin spine 2 +namespace: uberon/phenoscape-anatomy +def: "Process that is tooth- or thorn-like and arising from the anteriorly-facing margin of the abducted dorsal-fin spine 2." [TAO:wd] +synonym: "anterior denticle of dorsal fin spine 2" EXACT [TAO:0002004] +synonym: "anterior serration of dorsal fin spine 2" EXACT [TAO:0002004] +synonym: "anterior thorn of dorsal fin spine 2" EXACT [TAO:0002004] +synonym: "anterior tooth of dorsal fin spine 2" EXACT [TAO:0002004] +synonym: "dorsal fin spine 2 anterior dentation" EXACT [TAO:0002004] +is_a: UBERON:0004529 ! anatomical projection +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002005 +name: canal plate +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that is ventral to the preopercle and bears a portion of the preopercular sensory canal." [TAO:wd] +comment: The number of canal plates present can be variable. +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:0003113 ! dermatocranium +relationship: part_of UBERON:0005884 ! hyoid arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002006 +name: axillary pore +namespace: uberon/phenoscape-anatomy +def: "Pore that is located ventral to the posterior cleithral process and medial to the pectoral fin. Axillary pore is at the end of a duct from an integumentary gland." [TAO:wd] +is_a: UBERON:0008915 ! pore +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002007 +name: supraneural 4 bone +namespace: uberon/phenoscape-anatomy +def: "Supraneural dorsal to neural spine 4." [TAO:wd] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:2000442 ! supraneural bone +is_a: UBERON:4300216 ! supraneural 4 element +intersection_of: UBERON:4300216 ! supraneural 4 element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:4300263 ! supraneural 4 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002008 +name: neural lamina +namespace: uberon/phenoscape-anatomy +def: "Neural lamina is a median, vertical ridge or bony septum between neural spine 3 and neural spine 4 on the dorsal side of the Weberian vertebra. Neural lamina is unpaired." [TAO:wd] +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2001190 ! Weberian vertebra +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002009 +name: medial cartilage of palatine +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal cartilage that caps the medial margin of the palatine at the autopalatine-lateral ethmoid joint." [TAO:wd] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0011004 ! pharyngeal arch cartilage +relationship: develops_from UBERON:2001688 ! palatine cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002010 +name: hyoideomandibular nerve +namespace: uberon/phenoscape-anatomy +def: "Nerve that is a branch of cranial nerve VII that passes through or around the suspensorium to innervate muscles and sensory organs on or near pharyngeal arch 2." [TAO:wd] +xref: ZFA:0005397 +is_a: UBERON:0001021 ! nerve +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002011 +name: lateral fontanel of frontal +namespace: uberon/phenoscape-anatomy +def: "Fontanel within the frontal bone near the frontal-sphenotic joint. Lateral fontanel of frontal is paired." [TAO:wd] +comment: Original reference: de Pinna MCC, Vari RP. 1995. Monophyly and phylogenetic diagnosis of the family Cetopsidae, with synonymization of the Helogenidae (Teleostei: Siluriformes). Smithsonian Contributions to Zoology 571: 1-26. +xref: ZFA:0005537 +is_a: UBERON:0002221 ! fontanelle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002012 +name: dentary foramen +namespace: uberon/phenoscape-anatomy +def: "Foramen located on the dentary for passage of the mandibular nerve." [TAO:wd] +xref: ZFA:0005427 +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0013685 ! foramen of skull +relationship: part_of UBERON:0004742 ! dentary +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002013 +name: ascending limb of ceratobranchial 5 bone +namespace: uberon/phenoscape-anatomy +def: "Process that is the dorsally directed portion of ceratobranchial 5 bone." [TAO:wd] +comment: An ascending limb of the ceratobranchial is found in Cypriniformes. +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:2002014 ! ascending limb of ceratobranchial 5 cartilage +relationship: part_of UBERON:2001239 ! ceratobranchial 5 bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002014 +name: ascending limb of ceratobranchial 5 cartilage +namespace: uberon/phenoscape-anatomy +def: "Process that is the dorsally directed portion of ceratobranchial 5 cartilage." [TAO:wd] +comment: An ascending limb of the ceratobranchial is found in Cypriniformes. +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2001521 ! ceratobranchial 5 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002015 +name: pharyngobranchial tooth plate +namespace: uberon/phenoscape-anatomy +def: "Dermal bone of upper pharyngeal arches associated with pharyngobranchial bones or cartilages, usually bearing teeth." [TAO:wd] +synonym: "pharyngobranchial toothplate" EXACT [TAO:0002015] +is_a: UBERON:2001647 ! pharyngeal tooth plate +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002016 +name: pharyngobranchial 4 tooth plate +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal tooth plate that lies ventral to pharyngobranchial 4." [TAO:wd] +synonym: "pharyngobranchial 4 toothplate" EXACT [TAO:0002016] +is_a: UBERON:2002015 ! pharyngobranchial tooth plate +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002017 +name: anterior limb of ceratobranchial 5 bone +namespace: uberon/phenoscape-anatomy +def: "Process that is the anterior and medially directed portion of ceratobranchial 5 bone part of ceratobranchial 5 bone." [TAO:wd] +comment: This term applies to cypriniform fishes. +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:2002018 ! anterior limb of ceratobranchial 5 cartilage +relationship: part_of UBERON:2001239 ! ceratobranchial 5 bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002018 +name: anterior limb of ceratobranchial 5 cartilage +namespace: uberon/phenoscape-anatomy +def: "Process that is the anterior and medially directed portion of ceratobranchial 5 cartilage." [TAO:wd] +comment: This term applies to cypriniform fishes. +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2001521 ! ceratobranchial 5 cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002019 +name: pterotic-posttemporal-supracleithrum +namespace: uberon/phenoscape-anatomy +def: "Bone that is a fusion of the pterotic, posttemporal, and supracleithrum bones." [TAO:wd] +synonym: "pterotic-supracleithrum" EXACT [TAO:0002019] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:0002241 ! chondrocranium +relationship: part_of UBERON:0003113 ! dermatocranium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002020 +name: hypomaxilla +namespace: uberon/phenoscape-anatomy +def: "Dermal bone bearing teeth located between the distal end of the premaxilla and the middle of the maxilla. The hypomaxilla is a paired bone." [TAO:ga_tg] +comment: Hypomaxilla is a bone restricted to some clupeiforms. See Berry (1964) for a detailed account of the distribution of the hypomaxilla within clupeiforms and specifically in Herengula. +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0011597 ! bone of upper jaw +relationship: part_of UBERON:0003113 ! dermatocranium +relationship: part_of UBERON:0011085 ! palatoquadrate arch +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002021 +name: ascending process of the parasphenoid +namespace: uberon/phenoscape-anatomy +def: "Process that is the lateral projection of the parasphenoid arising and articulating with the more dorsal portions of the neurocranium, usually at the level of the prootic." [TAO:wd] +synonym: "ascending ramus of the parasphenoid" EXACT [TAO:0002021] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004745 ! parasphenoid +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002022 +name: dermethmoid +namespace: uberon/phenoscape-anatomy +def: "Dermal bone of the dorsal surface of the olfactory region. Dermethmoid can be paired or median." [TAO:wd] +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0011164 ! neurocranium bone +relationship: part_of UBERON:0003112 ! olfactory region +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002023 +name: second preethmoid bone +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone found between the preethmoid and maxilla." [TAO:wd] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:4300286 ! second preethmoid element +relationship: develops_from UBERON:4300285 ! second preethmoid cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002024 +name: mental barbel +namespace: uberon/phenoscape-anatomy +def: "Barbel that originates on the chin." [TAO:wd] +xref: ZFA:0005433 +is_a: UBERON:2000622 ! barbel +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002026 +name: pectoral fin proximal radial bone 1 +namespace: uberon/phenoscape-anatomy +def: "pectoral fin proximal radial 1 element that is composed of bone tissue." [OBOL:automatic] +synonym: "first pectoral basal radial" EXACT [TAO:0002026] +is_a: UBERON:2001587 ! pectoral fin proximal radial bone +is_a: UBERON:2102026 ! pectoral fin proximal radial element 1 +intersection_of: UBERON:2102026 ! pectoral fin proximal radial element 1 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2202026 ! pectoral fin proximal radial cartilage 1 + +[Term] +id: UBERON:2002027 +name: pectoral fin proximal radial bone 2 +namespace: uberon/phenoscape-anatomy +def: "pectoral fin proximal radial 2 element that is composed of bone tissue." [OBOL:automatic] +synonym: "second pectoral basal radial" EXACT [TAO:0002027] +is_a: UBERON:2001587 ! pectoral fin proximal radial bone +is_a: UBERON:2102027 ! pectoral fin proximal radial element 2 +intersection_of: UBERON:2102027 ! pectoral fin proximal radial element 2 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2202027 ! pectoral fin proximal radial cartilage 2 + +[Term] +id: UBERON:2002028 +name: pectoral fin proximal radial bone 3 +namespace: uberon/phenoscape-anatomy +def: "pectoral fin proximal radial 3 element that is composed of bone tissue." [OBOL:automatic] +synonym: "third pectoral basal radial" EXACT [TAO:0002028] +is_a: UBERON:2001587 ! pectoral fin proximal radial bone +is_a: UBERON:2102028 ! pectoral fin proximal radial element 3 +intersection_of: UBERON:2102028 ! pectoral fin proximal radial element 3 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2202028 ! pectoral fin proximal radial cartilage 3 + +[Term] +id: UBERON:2002029 +name: pectoral fin proximal radial bone 4 +namespace: uberon/phenoscape-anatomy +def: "pectoral fin proximal radial 4 element that is composed of bone tissue." [OBOL:automatic] +synonym: "fourth pectoral basal radial" EXACT [TAO:0002029] +is_a: UBERON:2001587 ! pectoral fin proximal radial bone +is_a: UBERON:2102029 ! pectoral fin proximal radial element 4 +intersection_of: UBERON:2102029 ! pectoral fin proximal radial element 4 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2202029 ! pectoral fin proximal radial cartilage 4 + +[Term] +id: UBERON:2002030 +name: ventral keel of coracoid +namespace: uberon/phenoscape-anatomy +def: "Process on the ventral surface of the horizontal limb of the coracoid, close to and parallel to the coracoid-cleithrum joint. Ventral keel of coracoid is paired." [TAO:wd] +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0004743 ! coracoid bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002031 +name: orbital foramen +namespace: uberon/phenoscape-anatomy +def: "Foramen in the bone or cartilage comprising the anterior wall of the orbit, and through which passes at least the deep ophthalmic branch of cranial nerve V (trigeminal)." [TAO:wd] +xref: ZFA:0005430 +is_a: UBERON:0005744 ! bone foramen +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002032 +name: lateral ethmoid-frontal joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the lateral ethmoid and frontal. lateral ethmoid-frontal joint is paired." [TAO:wd] +xref: ZFA:0005477 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0004866 ! actinopterygian frontal bone +intersection_of: connects UBERON:2000226 ! lateral ethmoid bone +relationship: connects UBERON:0004866 ! actinopterygian frontal bone +relationship: connects UBERON:2000226 ! lateral ethmoid bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002033 +name: prootic-pterosphenoid joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the prootic and pterosphenoid. prootic-pterosphenoid joint is paired." [TAO:wd] +xref: ZFA:0005482 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0004746 ! prootic bone +intersection_of: connects UBERON:2000419 ! pterosphenoid +relationship: connects UBERON:0004746 ! prootic bone +relationship: connects UBERON:2000419 ! pterosphenoid +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002034 +name: prootic-exoccipital joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the prootic and exoccipital. Prootic-exoccipital joint is paired." [TAO:wd] +xref: ZFA:0005481 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001693 ! exoccipital bone +intersection_of: connects UBERON:0004746 ! prootic bone +relationship: connects UBERON:0001693 ! exoccipital bone +relationship: connects UBERON:0004746 ! prootic bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002038 +name: basioccipital-exoccipital joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the basioccipital and exoccipital. Basioccipital-exoccipital joint is paired." [TAO:wd] +xref: ZFA:0005423 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001692 ! basioccipital bone +intersection_of: connects UBERON:0001693 ! exoccipital bone +relationship: connects UBERON:0001692 ! basioccipital bone +relationship: connects UBERON:0001693 ! exoccipital bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002039 +name: dilatator fossa +namespace: uberon/phenoscape-anatomy +def: "Fossa located on the neurocranium that is formed from portions of the sphenotic, frontal and pterotic bones." [TAO:wd] +comment: Dilatator fossa is present in some characiform fishes. +is_a: UBERON:0004704 ! bone fossa +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002040 +name: inter-coracoid joint +namespace: uberon/phenoscape-anatomy +def: "Joint between the right and left coracoid bones of the pectoral girdle." [TAO:wd] +xref: ZFA:0005470 +is_a: UBERON:0008114 ! joint of girdle +relationship: part_of UBERON:0007831 ! pectoral girdle skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002041 +name: parapophysis 6 +namespace: uberon/phenoscape-anatomy +def: "Parapophysis that is the lateral projection from the sixth centrum." [TAO:wd] +is_a: UBERON:0003109 ! parapophysis +relationship: part_of UBERON:2001980 ! vertebral element 6 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002042 +name: parapophysis 5 +namespace: uberon/phenoscape-anatomy +def: "Parapophysis that is the lateral projection from the fifth centrum." [TAO:wd] +is_a: UBERON:0003109 ! parapophysis +relationship: part_of UBERON:2001732 ! vertebral element 5 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002043 +name: posterior limb of parapophysis 4 +namespace: uberon/phenoscape-anatomy +def: "Process that arises and projects posterolaterally from parapophysis 4. Posterior limb of parapophysis 4 is bilaterally paired." [TAO:wd] +synonym: "posterior branch of parapophysis 4" EXACT [TAO:0002043] +synonym: "posterior wing of parapophysis 4" EXACT [TAO:0002043] +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2001971 ! parapophysis 4 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002044 +name: anterior limb of parapophysis 4 +namespace: uberon/phenoscape-anatomy +def: "Process that arises and projects anterolaterally from parapophysis 4. Anterior limb of parapophysis 4 is bilaterally paired." [TAO:wd] +synonym: "anterior branch of parapophysis 4" EXACT [TAO:0002044] +synonym: "anterior wing of parapophysis 4" EXACT [TAO:0002044] +synonym: "Mullerian ramus" EXACT [TAO:0002044] +synonym: "Müllerian ramus" EXACT [TAO:0002044] +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:2001971 ! parapophysis 4 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002049 +name: obsolete alarm substance cell +namespace: uberon/phenoscape-anatomy +def: "Epithelial cell that produces a chemical that triggers antipredator behavior." [TAO:wd] +comment: replace with CL_0007021 once cl is released. +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002050 +name: obsolete Schreckstoff +namespace: uberon/phenoscape-anatomy +def: "Chemical substance that functions as an alarm signal." [] +is_obsolete: true +replaced_by: CHEBI:133299 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002051 +name: scale circulus +namespace: uberon/phenoscape-anatomy +def: "Fine ridge on surface of scale, often parallel to the circumference of scale." [TAO:wd] +synonym: "circuli" EXACT PLURAL [TAO:0002051] +synonym: "crétule" EXACT [PSPUB:0000149] +xref: ZFA:0005499 +is_a: UBERON:0006800 ! anatomical line +relationship: part_of UBERON:0007380 ! dermal scale +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002052 +name: prootic depression +namespace: uberon/phenoscape-anatomy +def: "Shallow area that exists on the prootic." [TAO:wd] +xref: ZFA:0005510 +is_a: UBERON:0000464 ! anatomical space +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002053 +name: bony plate +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that is located on or subjacent to the surface anywhere on the body and that is not part of the general complement of scales, dermal bone of the dermatocranium, postcranial axial skeleton or paired fin skeleton. Bony plate may exist singly, or as unpaired or paired clusters or series." [TAO:wd] +synonym: "armor" EXACT [TAO:0002053] +synonym: "armor plate" EXACT [TAO:0002053] +synonym: "osteoderms" EXACT [TAO:0002053] +xref: ZFA:0005532 +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:0002090 ! postcranial axial skeleton +relationship: part_of UBERON:0002199 ! integument +relationship: part_of UBERON:2002096 ! bony plate series +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002054 +name: vertebra 5-vertebra 6 joint +namespace: uberon/phenoscape-anatomy +def: "Joint between the centra, and sometimes the neural arches or parapophyses." [TAO:wd] +xref: ZFA:0005505 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:2001732 ! vertebral element 5 +intersection_of: connects UBERON:2001980 ! vertebral element 6 +relationship: connects UBERON:2001732 ! vertebral element 5 +relationship: connects UBERON:2001980 ! vertebral element 6 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002055 +name: vertebra 6 - vertebra 7 joint +namespace: uberon/phenoscape-anatomy +def: "Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 6 and vertebra 7." [TAO:wd] +xref: ZFA:0005506 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:2001980 ! vertebral element 6 +intersection_of: connects UBERON:2001981 ! vertebral element 7 +relationship: connects UBERON:2001980 ! vertebral element 6 +relationship: connects UBERON:2001981 ! vertebral element 7 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002056 +name: hypural 6 +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2000364 ! hypural +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002057 +name: gill opening +namespace: uberon/phenoscape-anatomy +def: "Anatomical space that is the external opening of a gill slit connecting the pharyngeal cavity to the exterior. Gill opening is usually paired and located on the lateral or ventral surfaces of the head." [TAO:wd] +comment: In teleosts, there is typically a single gill opening posterior to the operculum. +synonym: "branchial aperture" EXACT [TAO:0002057] +synonym: "branchial opening" EXACT [TAO:0002057] +synonym: "gill aperture" EXACT [TAO:0002057] +synonym: "opercular opening" EXACT [TAO:0002057] +xref: ZFA:0005389 +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0001042 ! chordate pharynx +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002058 +name: Weberian complex centrum +namespace: uberon/phenoscape-anatomy +def: "Centrum that is the fusion of centra 2-4." [TAO:wd] +is_a: UBERON:0001075 ! bony vertebral centrum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002059 +name: posttemporal-parietal joint +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0004865 ! actinopterygian parietal bone +intersection_of: connects UBERON:2000549 ! posttemporal +relationship: connects UBERON:0004865 ! actinopterygian parietal bone +relationship: connects UBERON:2000549 ! posttemporal +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002061 +name: predorsal vertebra +namespace: uberon/phenoscape-anatomy +def: "Vertebra that is positioned between the vertebra immediately anterior to the first dorsal-fin pterygiophore to the anteriormost vertebra." [TAO:wd] +is_a: UBERON:0002412 ! vertebra +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002062 +name: branched caudal fin ray +namespace: uberon/phenoscape-anatomy +def: "Caudal fin lepidotrichium that is distally branched." [TAO:wd] +xref: ZFA:0005533 +is_a: UBERON:4000174 ! caudal fin lepidotrichium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002063 +name: nuchal plate series +namespace: uberon/phenoscape-anatomy +def: "Anatomical cluster that consists of more than one type of nuchal plate in an individual." [TAO:wd] +is_a: UBERON:0000477 ! anatomical cluster +intersection_of: UBERON:0000477 ! anatomical cluster +intersection_of: composed_primarily_of UBERON:2001815 ! nuchal plate +intersection_of: part_of UBERON:0002090 ! postcranial axial skeleton +relationship: composed_primarily_of UBERON:2001815 ! nuchal plate +relationship: part_of UBERON:0002090 ! postcranial axial skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002064 +name: uroneural 1 +namespace: uberon/phenoscape-anatomy +def: "Uroneural that is the anteriormost element of the uroneural series." [TAO:wd] +is_a: UBERON:2000602 ! uroneural +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002065 +name: ural centrum 1 +namespace: uberon/phenoscape-anatomy +def: "A vertebral centrum that is immediately posterior to preural vertebra 1. Ural centrum 1 is an unpaired median bone." [TAO:GA_TG, TAO:wd] +comment: Ural centrum 1 (polyural terminology) may articulate or fuse with its neural arch dorsally or the neural arch may be absent and with hypural 1 ventrally. Ural centrum 1 may be defined also as the first ural centrum bearing hypurals 1 and 2 (diural terminology). +is_a: UBERON:0004247 ! bone of dorsum +is_a: UBERON:2002085 ! ural centrum +relationship: part_of UBERON:2002163 ! ural vertebra 1 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002066 +name: auditory fenestra +namespace: uberon/phenoscape-anatomy +def: "Opening in the neurocranium to allow communication between the swimbladder and the inner ear." [TAO:wd] +xref: ZFA:0005418 +is_a: UBERON:0005744 ! bone foramen +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002067 +name: upper hypural set +namespace: uberon/phenoscape-anatomy +def: "Anatomical cluster including hypural 3 and more dorsal hypurals that supports the dorsal series of principal caudal lepidotrichia or rays. The upper hypural set articulates or fuses to ural centra 3, 4 or 5 (polyural terminology) or ural centrum 2 (diural terminology) depending on the teleost subgroup. The upper hypural set is composed of unpaired median bones." [TAO:GA_TG, TAO:wd] +comment: The number of hypurals included in the upper hypural set differs among teleostean subgroups. In basal teleosts this may include hypurals 3 to 9 or 10, whereas in more advanced groups this many include hypurals 3 to 5 or even less. +synonym: "upper hypurals" EXACT [TAO:0002067] +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:4000167 ! caudal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002068 +name: lower hypural set +namespace: uberon/phenoscape-anatomy +def: "Anatomical cluster including hypurals 1 and 2 that supports part of the ventral principal caudal lepidotrichia or rays and that separates from the dorsal hypural set through the hypural diastema. The lower hypural set articulates or fuses to ural centra 1 and 2 (polyural terminology) or ural centrum 1 (diural terminology) depending on the teleost subgroup. The lower hypural set is composed of unpaired median bones." [TAO:GA_TG, TAO:wd] +synonym: "lower hypurals" EXACT [TAO:0002068] +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:4000167 ! caudal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002069 +name: distal cartilage of posterior process of basipterygium +namespace: uberon/phenoscape-anatomy +def: "Process that is cartilaginous and arises from the distal margin or tip of posterior process of basipterygium and projects posteriorly." [TAO:wd] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2001539 ! basipterygium cartilage +relationship: part_of UBERON:2001734 ! posterior process of basipterygium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002070 +name: internal anterior process of basipterygium +namespace: uberon/phenoscape-anatomy +def: "Process that is bony and arises from anteromedial corner of basipterygium and projects anteriorly or anteromedially." [TAO:wd] +synonym: "internal anterior arm of basipterygium" EXACT [TAO:0002070] +synonym: "internal arm of the basipterygium" EXACT [TAO:0002070] +synonym: "mesial anterior arm of basipterygium" EXACT [TAO:0002070] +synonym: "mesial anterior process of basipterygium" EXACT [TAO:0002070] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2000623 ! basipterygium bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002071 +name: distal cartilage of internal anterior process of basipterygium +namespace: uberon/phenoscape-anatomy +def: "Process that is cartilaginous and arises from the distal tip of internal anterior process of basipterygium." [TAO:wd] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2000623 ! basipterygium bone +relationship: part_of UBERON:2001539 ! basipterygium cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002072 +name: middle anterior process of basipterygium +namespace: uberon/phenoscape-anatomy +def: "Process that is bony and arises from anterior margin of basipterygium between internal anterior process of basipterygium and external anterior process of basipterygium. Middle anterior process of basipterygium projects anteriorly or anteromedially." [TAO:wd] +synonym: "middle anterior arm of basipterygium" EXACT [TAO:0002072] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2000623 ! basipterygium bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002073 +name: distal cartilage of middle anterior process of basipterygium +namespace: uberon/phenoscape-anatomy +def: "Process that is cartilaginous and arises from the distal tip of middle anterior process of basipterygium." [TAO:wd] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2000623 ! basipterygium bone +relationship: part_of UBERON:2001539 ! basipterygium cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002074 +name: external anterior process of basipterygium +namespace: uberon/phenoscape-anatomy +def: "Process that is bony and arises from anterolateral corner of basipterygium and projects anteriorly or anteromedially." [TAO:wd] +synonym: "external anterior arm of basipterygium" EXACT [TAO:0002074] +synonym: "external arm of basipterygium" EXACT [TAO:0002074] +synonym: "lateral anterior process of basipterygium" EXACT [TAO:0002074] +synonym: "lateral pelvic process" EXACT [http://hdl.handle.net/10088/11710] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2000623 ! basipterygium bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002075 +name: distal cartilage of external anterior process of basipterygium +namespace: uberon/phenoscape-anatomy +def: "Process that is cartilaginous and arises from the distal tip of external anterior process of basipterygium." [TAO:wd] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2000623 ! basipterygium bone +relationship: part_of UBERON:2001539 ! basipterygium cartilage +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002076 +name: lateral process of basipterygium +namespace: uberon/phenoscape-anatomy +def: "Process that is bony and arises from lateral margin of basipterygium lateral to pelvic fin lepidotrichium 1 and projects laterally or anterolaterally." [TAO:wd] +synonym: "posterolateral process of basipterygium" EXACT [TAO:0002076] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2000623 ! basipterygium bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002077 +name: lateropterygium +namespace: uberon/phenoscape-anatomy +def: "Bone that is attached or adjacent to lateral margin of basipterygium and anterior to pelvic fin lepidotrichium 1. The lateropterygium is a paired bone." [TAO:wd] +comment: The lateropterygium is present only in a few teleostean subgroups, e.g., some siluriforms. +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004375 ! bone of free limb or fin +is_a: UBERON:0004376 ! fin bone +is_a: UBERON:0010742 ! bone of pelvic complex +relationship: part_of UBERON:0010711 ! pelvic fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002078 +name: hypural plate +namespace: uberon/phenoscape-anatomy +def: "Perichondrally ossified bone that results from the fusion of two or more hypurals and support a variable number of principal caudal lepidotrichia. The hypural plate is an unpaired median bone." [TAO:GA_TG] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004376 ! fin bone +relationship: part_of UBERON:4000167 ! caudal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002079 +name: leptocephalous larva +namespace: uberon/phenoscape-anatomy +def: "Larval stage in some teleosts before metomorphosis." [TAO:wd] +is_a: UBERON:0002548 ! larva +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002080 +name: spina occipitalis +namespace: uberon/phenoscape-anatomy +def: "Process that is a ventral projection from the supraoccipital that extends between the exoccipitals to the dorsal margin of the foramen magnum." [TAO:wd] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0004747 ! supraoccipital bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002082 +name: basal fulcrum +namespace: uberon/phenoscape-anatomy +def: "Fulcrum that is large, laterally expanded, paired or unpaired, scale-like, and that precedes the base of a fin. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235" [PSPUB:0000171, TAO:GA_TG] +comment: Basal fulcra may precede the median fins or both of the paired and median fins. Basal fulcra may be lanceolate, leaf-like or arrow-like in shape. The series of basal fulcra may be formed by unpaired plus paired elements depending on the fish group. Most teleosts lack basal fulcra. For additional information on basal fulcra see Arratia (2008, 2009). +synonym: "basal fulcra" EXACT PLURAL [TAO:0002082] +is_a: UBERON:2002291 ! fulcrum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002083 +name: fringing fulcrum +namespace: uberon/phenoscape-anatomy +def: "Fulcrum that is a small, paired dermal structure associated with the marginal, leading rays of paired and/or unpaired fins. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235." [PSPUB:0000171, TAO:wd] +synonym: "fringing fulcra" EXACT PLURAL [TAO:0002083] +is_a: UBERON:2002291 ! fulcrum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002084 +name: pleurostyle +namespace: uberon/phenoscape-anatomy +def: "Postero-dorsal process of preural vertebra 1 or postero-dorsal process of the compound terminal centrum. The pleurostyle is a paired membrane bone." [TAO:GA_TG] +comment: The pleurostyle is currently interpreted as a modified pair of uroneurals that fuse to preural vertebra 1 or compound centrum early in ontogeny. However, it is unclear which pair of the series of uroneurals forms the pleurostyle in different teleost subgroups. +synonym: "uroneural" RELATED [TAO:0002084] +synonym: "uroneural 1" RELATED [TAO:0002084] +is_a: UBERON:2000602 ! uroneural +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002085 +name: ural centrum +namespace: uberon/phenoscape-anatomy +def: "A vertebral centrum that is posterior to preural vertebra 1 and consequently the most posterior vertebral centra. Ural centrum is a unpaired median bone." [TAO:GA_TG] +comment: A ural centrum may be formed by a chordacentrum alone, or chordacentrum plus autocentrum or autocentrum alone depending on the teleost subgroup. An ural centrum may articulate or fuse with its neural arch dorsally or the neural arch my be absent and with a hypural ventrally. The term ural centrum was proposed by Nybelin (1963). For the composition and formation of caudal vertebrae and centra see Arratia (1991), Arratia and Schultze (1992) and Arratia et al. (2001). +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004376 ! fin bone +relationship: part_of UBERON:4000167 ! caudal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002086 +name: pelvic axillary process +namespace: uberon/phenoscape-anatomy +def: "Anatomical cluster consisting of only a bony element or a combination of a bony element and one or more scales, or only modified scales, which lies in a fin fold at the base of the uppermost ray." [TAO:GA_TG] +is_a: UBERON:0004375 ! bone of free limb or fin +is_a: UBERON:0004376 ! fin bone +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0010742 ! bone of pelvic complex +relationship: part_of UBERON:0010711 ! pelvic fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002087 +name: pectoral axillary process +namespace: uberon/phenoscape-anatomy +def: "Pectoral axillary process is an elongate structure formed by one or more additional postcleithra or modified scales or a combination of both, that is firmly attached to a skin fold above the articular condyle of the uppermost pectoral fin ray or lepidotrichium 1." [TAO:GA_TG, TAO:wd] +comment: For additional information see Arratia (1997). +is_a: UBERON:0004375 ! bone of free limb or fin +is_a: UBERON:0004376 ! fin bone +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0010741 ! bone of pectoral complex +relationship: part_of UBERON:0010710 ! pectoral fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002088 +name: interhaemal bone +namespace: uberon/phenoscape-anatomy +def: "A small bone articulating distally with the haemal arch or a short haemal spine." [TAO:wd] +comment: Definition from Arratia 1999. +is_a: UBERON:0002513 ! endochondral bone +relationship: part_of UBERON:0002090 ! postcranial axial skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002089 +name: gular plate +namespace: uberon/phenoscape-anatomy +def: "Dermal bone located on the ventral surface of the skull and positioned between the two rami of the lower jaw. Anteriorly the gular attaches to the symphysis of the lower jaw through fibrous connective tissue. The gular is an unpaired median bone." [TAO:ga_tg, TAO:wd] +comment: A gular plate is absent in most extant teleosts. +synonym: "median gular" EXACT [TAO:0002089] +synonym: "median gular plate" EXACT [] +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:0003113 ! dermatocranium +relationship: part_of UBERON:0011153 ! ventral hyoid arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002090 +name: pro-otic fossa +namespace: uberon/phenoscape-anatomy +synonym: "prootic fossa" EXACT [TAO:0002090] +xref: ZFA:0005492 +is_a: UBERON:0004704 ! bone fossa +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002091 +name: median caudal cartilage +namespace: uberon/phenoscape-anatomy +def: "Cartilage associated with hypurals." [TAO:wd] +comment: Definition from Johnson and Patterson 1993. +is_a: UBERON:2001457 ! postcranial axial cartilage +relationship: part_of UBERON:4000167 ! caudal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002092 +name: rostral cartilage +namespace: uberon/phenoscape-anatomy +def: "Median chondrified cartilage bound to premaxillary ascending process by a rostro-premaxilla ligament." [TAO:wd] +is_a: UBERON:0003932 ! cartilage element of chondrocranium +is_a: UBERON:0013765 ! digestive system element +relationship: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0001709 ! upper jaw region +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002094 +name: dorsal fin pterygiophore 1 +namespace: uberon/phenoscape-anatomy +def: "Dorsal fin pterygiophore that is the anteriormost pterygiophore of the dorsal fin." [TAO:wd] +xref: ZFA:0005364 +is_a: UBERON:2001419 ! dorsal fin pterygiophore +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002095 +name: ventromedial opening of posttemporal fossa +namespace: uberon/phenoscape-anatomy +def: "A third opening of the posttemporal fossa posteriorly located relative to the fossa. It is bordered completely by the epiocciptial, or by both the epioccipital and exoccipital." [] {def="http://dx.doi.org/10.1590/S1679-62252010000300001"} +comment: Present in some characiforms. +synonym: "third posttemporal fossa" EXACT [] +is_a: UBERON:0004705 ! fenestra +relationship: part_of UBERON:2001753 ! posttemporal fossa +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002096 +name: bony plate series +namespace: uberon/phenoscape-anatomy +def: "Anatomical cluster that consists of more than one bony plate in an individual." [TAO:wd] +synonym: "armor plate series" EXACT [TAO:0002096] +is_a: UBERON:0010912 ! subdivision of skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002097 +name: sensory canal pore series +namespace: uberon/phenoscape-anatomy +def: "Anatomical cluster that consists of more than one sensory canal pore." [TAO:wd] +is_a: UBERON:0000477 ! anatomical cluster +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002098 +name: hemal spine series +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000477 ! anatomical cluster +relationship: composed_primarily_of UBERON:2001364 ! hemal spine +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002099 +name: lateral line scale series +namespace: uberon/phenoscape-anatomy +def: "Anatomical cluster that consists of more than one lateral line scale." [TAO:wd] +is_a: UBERON:0000477 ! anatomical cluster +intersection_of: UBERON:0000477 ! anatomical cluster +intersection_of: composed_primarily_of UBERON:2001824 ! lateral line scale +intersection_of: part_of UBERON:0002540 ! lateral line system +relationship: composed_primarily_of UBERON:2001824 ! lateral line scale +relationship: part_of UBERON:0002540 ! lateral line system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002101 +name: branchiostegal ray series +namespace: uberon/phenoscape-anatomy +def: "Anatomical cluster that consists of the branchiostegal rays within an individual." [TAO:wd] +synonym: "branchiostegals" RELATED [TAO:0002101] +is_a: UBERON:0000477 ! anatomical cluster +intersection_of: UBERON:0000477 ! anatomical cluster +intersection_of: composed_primarily_of UBERON:2000476 ! branchiostegal ray +intersection_of: part_of UBERON:0003113 ! dermatocranium +relationship: composed_primarily_of UBERON:2000476 ! branchiostegal ray +relationship: part_of UBERON:0003113 ! dermatocranium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002102 +name: epibranchial series +namespace: uberon/phenoscape-anatomy +def: "Anatomical cluster that consists of the epibranchial elements within an individual." [TAO:wd] +synonym: "epibranchials" EXACT PLURAL [TAO:0002102] +is_a: UBERON:0000477 ! anatomical cluster +intersection_of: UBERON:0000477 ! anatomical cluster +intersection_of: composed_primarily_of UBERON:2001904 ! epibranchial element +relationship: composed_primarily_of UBERON:2001904 ! epibranchial element +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002103 +name: ceratobranchial series +namespace: uberon/phenoscape-anatomy +def: "Anatomical cluster that consists of the ceratobranchial elements within an individual." [TAO:wd] +is_a: UBERON:0000477 ! anatomical cluster +intersection_of: UBERON:0000477 ! anatomical cluster +intersection_of: composed_primarily_of UBERON:2001898 ! ceratobranchial element +relationship: composed_primarily_of UBERON:2001898 ! ceratobranchial element +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002105 +name: electrosensory lateral line lobe +namespace: uberon/phenoscape-anatomy +def: "Anatomical structure located in the hindbrain that receives primary electroreceptor input." [TAO:wd] +comment: Definition reference: McNamara, AM., JP Denizot, CD Hopkins. 2005. Comparative Anatomy of the Electrosensory Lateral Line Lobe of Mormyrids: The Mystery of the Missing Map in the Genus Stomatorhinus (Family: Mormyridae). Brain, Behavior and Evolution 65:188-201. +synonym: "ELL" EXACT [TAO:0002105] +is_a: UBERON:0009662 ! hindbrain nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002106 +name: eminentia granularis +namespace: uberon/phenoscape-anatomy +def: "Anatomical structure that is a subdivision of the cerebellum; it is the location of some lateral line nerve synapses." [TAO:wd] +comment: Definition based on Albert,2001 [Albert JS. 2001. Species Diversity and Phylogenetic systematics of American Knifefishes (Gymnotiformes, Teleostei). Miscellaneous Publications, Museum of Zoology, University of Michigan no. 190:140 pages.] +synonym: "EG" EXACT [TAO:0002106] +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002037 ! cerebellum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002107 +name: medullary command nucleus +namespace: uberon/phenoscape-anatomy +def: "Anatomical structure that consists of two neuron types: pacemaker cells and relay cells. The medullary command nucleus commands the timing of the electric organ discharge." [TAO:wd] +comment: Definition reference: Moortgat, KT, Bullock, TH, and Sejnowski TJ. 2000. J Neurophysiol 83: 971-983. Precision of the Pacemaker Nucleus in a Weakly Electric Fish: Network Versus Cellular Influences. +synonym: "MCN" EXACT [TAO:0002107] +synonym: "medullary pacemaker nucleus" EXACT [TAO:0002107] +synonym: "pacemaker nucleus" EXACT [TAO:0002107] +is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002028 ! hindbrain +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002108 +name: buccal papilla +namespace: uberon/phenoscape-anatomy +def: "Papilla that is part of the mouth." [TAO:wd] +is_a: UBERON:2001995 ! papilla +relationship: part_of UBERON:0000165 ! mouth +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002109 +name: uroneural 2 +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2000602 ! uroneural +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002110 +name: metapterygoid-quadrate fenestra +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0005744 ! bone foramen +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002111 +name: prootic bulla +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005500 +is_a: UBERON:0000481 ! multi-tissue structure +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002112 +name: preural 3 vertebra +namespace: uberon/phenoscape-anatomy +synonym: "preural centrum 3" EXACT [TAO:0002112] +synonym: "pu3" EXACT [TAO:0002112] +is_a: UBERON:2000734 ! preural vertebra +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002114 +name: cotylephore +namespace: uberon/phenoscape-anatomy +def: "Multi-tissue structure that is a transient outgrowth of tissue on skin brooding fish that acts as an attachment site for embryos." [TAO:wd] +comment: Definition reference: James Wetzel, John P. Wourms and John Friel 1997. Comparative morphology of cotylephores in Platystacus and Solenostomus: modifications of the integument for egg attachment in skin-brooding fishes. Environmental Biology of Fishes. Volume 50, Number 1 / September, 1997. Pages 13 - 25. +synonym: "cotylephores" EXACT PLURAL [TAO:0002114] +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0005156 ! reproductive structure +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002115 +name: uroneural 3 +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2000602 ! uroneural +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002116 +name: epibranchial organ +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0003103 ! compound organ +is_a: UBERON:0013765 ! digestive system element +relationship: part_of UBERON:0001042 ! chordate pharynx +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002117 +name: ovipositor +namespace: uberon/phenoscape-anatomy +def: "Organ that functions in egg deposition." [TAO:wd] +is_a: UBERON:0003103 ! compound organ +is_a: UBERON:0005156 ! reproductive structure +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002118 +name: scale radius +namespace: uberon/phenoscape-anatomy +def: "Erosion channel that radiates out from the growth center (focus) of the scale across and through the circuli." [ISBN-10:0226870138] +synonym: "radii" EXACT PLURAL [TAO:0002118] +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0007380 ! dermal scale +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002119 +name: dermal scale focus +namespace: uberon/phenoscape-anatomy +comment: A demarcation on the scale signfiyning the initial growth point. Requires further classification see Lagler 1947. +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0007380 ! dermal scale +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002120 +name: orbitosphenoid septum +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0003037 ! septum +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0002478 ! orbitosphenoid +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002122 +name: pouch scale +namespace: uberon/phenoscape-anatomy +def: "Scale that forms part of the posterior border of the caudal-fin organ. Pouch scales are usually hypertrophied." [TAO:wd] +comment: Definition reference: Weitzman SH, Menezes NA. 1998. Relationships of the tribes and genera of the Glandulocaudiinae (Ostariophysi: Characiformes: Characidae), with a description of a new genus. In: Malabarba LR, Reis RE, Vari RP, Lucena ZMS, Lucena CAS, editors. Phylogeny and Classification of Neotropical Fishes. Porto Alegre: EDIPUCRS. p 171-192. +is_a: UBERON:0007380 ! dermal scale +relationship: part_of UBERON:2002125 ! caudal-fin organ +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002123 +name: neural arch 5 +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0003861 ! neural arch +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002124 +name: nuptial tubercle +namespace: uberon/phenoscape-anatomy +def: "Surface structure that is a small protuberance on the surface of the body. Nuptial tubercles primarily function to facilitate contact between individuals for breeding." [TAO:wd] +comment: Nuptial tubercles may be keratinized or nonkeratinized. Also may function in territorial defense or stimulation of females in breeding.\n\nDefinition reference: Wiley, M. L. and B. B. Collette. 1970. Breeding tubercles and contact organs in fishes: Their occurrence, structure, and significance. Bull Am Mus Nat Hist 143: 143-216. +synonym: "breeding tubercle" EXACT [TAO:0002124] +synonym: "contact organ" EXACT [TAO:0002124] +is_a: UBERON:0003102 ! surface structure +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002125 +name: caudal-fin organ +namespace: uberon/phenoscape-anatomy +def: "Organ that consists of a pouch located on the ventral caudal-fin lobe, opening posteriorly, and composed of glandular tissue. The caudal-fin organ presumably functions to secrete pheromones during courtship." [TAO:wd] +comment: Definition reference:\nWeitzman SH, Menezes NA. 1998. Relationships of the tribes and genera of\nthe Glandulocaudiinae (Ostariophysi: Characiformes: Characidae), with a\ndescription of a new genus. In: Malabarba LR, Reis RE, Vari RP, Lucena ZMS,\nLucena CAS, editors. Phylogeny and Classification of Neotropical Fishes.\nPorto Alegre: EDIPUCRS. p 171-192. +synonym: "caudal fin organ" EXACT [TAO:0002125] +synonym: "caudal organ" BROAD [TAO:0002125] +synonym: "caudal sac" EXACT [TAO:0002125] +synonym: "glandular organ" BROAD [TAO:0002125] +is_a: UBERON:0003103 ! compound organ +relationship: part_of UBERON:4000164 ! caudal fin +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002126 +name: caudal-fin ray pump +namespace: uberon/phenoscape-anatomy +def: "Anatomical cluster that consists of thickened caudal-fin rays modified into a pumping mechanism associated with the caudal-fin organ." [TAO:wd] +comment: Caudal fin rays can vary in thickness and form of the pump can vary from a simple open groove to complex chambered structure.\n\nDefinition reference:\nWeitzman SH, Menezes NA. 1998. Relationships of the tribes and genera of\nthe Glandulocaudiinae (Ostariophysi: Characiformes: Characidae), with a\ndescription of a new genus. In: Malabarba LR, Reis RE, Vari RP, Lucena ZMS,\nLucena CAS, editors. Phylogeny and Classification of Neotropical Fishes.\nPorto Alegre: EDIPUCRS. p 171-192. +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:4000164 ! caudal fin +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002127 +name: myorhabdoid bone +namespace: uberon/phenoscape-anatomy +def: "Intermuscular bone that is located in the dorsal and ventral forward flexures of the myoseptum." [TAO:wd] +comment: Definition reference:\nPatterson, C., Johnson, G.D. 1995. The intermuscular bones and ligaments of teleostean fishes. Smithosonian Contributions to Zoology 559:1-85. +synonym: "myorhabdoi" EXACT PLURAL [TAO:0002127] +is_a: UBERON:2000526 ! intermuscular bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002128 +name: cavum sinus imparis +namespace: uberon/phenoscape-anatomy +synonym: "cavum sinus impar" EXACT [TAO:0002128] +is_a: UBERON:0000464 ! anatomical space +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002129 +name: caudal rod +namespace: uberon/phenoscape-anatomy +def: "Multi-tissue structure that is a cartilaginous or collagenous bar supporting the caudal appendage." [TAO:wd] +comment: Definition reference: Albert, JS and WL Fink. 2007. PHYLOGENETIC\nRELATIONSHIPS OF FOSSIL NEOTROPICAL ELECTRIC FISHES\n(OSTEICHTHYES: GYMNOTIFORMES) FROM THE UPPER MIOCENE OF BOLIVIA . Journal\nof Vertebrate Paleontology 27(1):17-25 +synonym: "hypural-opisthural rod" EXACT [TAO:0002129] +is_a: UBERON:0000481 ! multi-tissue structure +relationship: part_of UBERON:0002090 ! postcranial axial skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002130 +name: caudal appendage +namespace: uberon/phenoscape-anatomy +def: "Multi-tissue structure that is region of the body posterior to the last anal-fin ray." [TAO:wd] +comment: Comments: This is a gymnotiform structure. The caudal appendage can include vertebrae, a cartilginous rod, pterygiophores, anal-fin rays, and intermuscular bones.\nDefinition reference: Albert, JS and WL Fink. 2007. PHYLOGENETIC RELATIONSHIPS OF FOSSIL NEOTROPICAL ELECTRIC FISHES (OSTEICHTHYES: GYMNOTIFORMES) FROM THE UPPER MIOCENE OF BOLIVIA. Journal of Vertebrate Paleontology 27(1):17-25. +synonym: "caudal filament" EXACT [TAO:0002130] +is_a: UBERON:0000481 ! multi-tissue structure +relationship: part_of UBERON:0002090 ! postcranial axial skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002131 +name: obsolete horizontal septum +namespace: uberon/phenoscape-anatomy +def: "Anatomical structure that consists of a sheet of connective tissue attached to the vertebral column and dividing the epaxial and hypaxial musculature." [TAO:wd] +is_obsolete: true +replaced_by: UBERON:0003901 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002132 +name: hypural 7 +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2000364 ! hypural +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002133 +name: dorsal organ +namespace: uberon/phenoscape-anatomy +def: "Surface structure that is a midsaggital strap of flattened ectodermal tissue extending along the posterodorsal midline." [TAO:wd] +comment: Dorsal organ is a structure found in apteronotid gymnotiform fishes. Definition reference:\n\nAlbert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical electric fish (Osteichthyes: Gymnotiformes) from the Upper Miocene of Bolivia. Journal of Vertebrate Paleontology 27:17-25. +is_a: UBERON:0003102 ! surface structure +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002141 +name: annular ligament +namespace: uberon/phenoscape-anatomy +def: "Ligament that is in the eye and is located at the angle between the cornea and the iris." [ZFA:curator] +xref: ZFA:0001676 +is_a: UBERON:0008846 ! skeletal ligament +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002144 +name: obsolete anterior catecholaminergic tract +namespace: uberon/phenoscape-anatomy +def: "CNS white matter, an axonal tract between ventral diencephalon and ventral telencephalon. At 3 d, the anterior catecholaminergic tract includes noradrenergic projections from the hindbrain and dopaminergic projections from ventral dopaminergic neurons. During later development, other catecholaminergic projections may also contribute to the anterior catecholaminergic tract." [ZFIN:ZDB-PUB-091221-28] +xref: ZFA:0005342 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002145 +name: anterior swim bladder bud +namespace: uberon/phenoscape-anatomy +def: "Portion of tissue that forms from the swim bladder epithelium at the anterior end of the swim bladder." [ZFIN:090511-18] +xref: ZFA:0005337 +is_a: UBERON:0000479 ! tissue +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002147 +name: arrector muscle +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005275 +is_a: UBERON:0014892 ! skeletal muscle organ +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002149 +name: vertebral element 9 +namespace: uberon/phenoscape-anatomy +def: "Vertebra that is posteriorly adjacent to vertebra 8." [TAO:curator] +xref: ZFA:0005351 +is_a: UBERON:0010913 ! vertebral element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002150 +name: vertebral element 10 +namespace: uberon/phenoscape-anatomy +def: "Vertebra that is posteriorly adjacent to vertebra 9." [TAO:curator] +xref: ZFA:0005353 +is_a: UBERON:0010913 ! vertebral element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002151 +name: vertebral element 11 +namespace: uberon/phenoscape-anatomy +def: "Vertebra that is posteriorly adjacent to vertebra 10." [TAO:wd] +xref: ZFA:0005354 +is_a: UBERON:0010913 ! vertebral element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002152 +name: vertebral element 12 +namespace: uberon/phenoscape-anatomy +def: "Vertebra that is posteriorly adjacent to vertebra 11. May have hemal arch and rib." [TAO:wd] +xref: ZFA:0005352 +is_a: UBERON:0010913 ! vertebral element +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002154 +name: opercular cavity +namespace: uberon/phenoscape-anatomy +def: "Anatomical space which is located beneath the operculum and external to the gills." [ZFIN:curator] +xref: ZFA:0001654 +is_a: UBERON:0000464 ! anatomical space +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002158 +name: obsolete palatine +namespace: uberon/phenoscape-anatomy +def: "Compound endochdondral and dermal bone that results from the fusion of the dermal dermopalatine and the endochondral autopalatine and forms the antero-lateral region of the palate. Commonly, it articulates with the maxilla antero-laterally and with the ethmoidal region medially. The palatine is paired." [TAO:GA_TG] +comment: Depending on the teleostean group, the palatine may articulate with the entopterygoid posteriorly. The term palatine is usually used for the more advanced teleosts with a large autopalatine and a small dermopalatine represented by a few teeth. +is_obsolete: true +replaced_by: UBERON:0001682 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002159 +name: caudal basal fulcrum +namespace: uberon/phenoscape-anatomy +def: "Basal fulcrum that precedes a caudal fin lobe. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235." [PSPUB:0000171, TAO:GA_TG] +comment: Caudal basal fulcra precede the bases of both lobes of the caudal fin or only the dorsal one in basal teleosts. Most teleosts lack basal fulcra on the caudal fin. For additional information on basal fulcra see Arratia (2008, 2009). +synonym: "caudal basal fulcra" EXACT PLURAL [TAO:0002159] +is_a: UBERON:2002082 ! basal fulcrum +relationship: part_of UBERON:4000167 ! caudal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002160 +name: ural centrum 3 +namespace: uberon/phenoscape-anatomy +def: "A vertebral centrum that is located immediately posterior to ural centrum 2 (polyural terminology). Ural centrum 3 articulates with hypural 3 ventrally. Ural centrum 3 is an unpaired median bone." [TAO:GA_TG] +comment: Ural centrum 3 lacks a neural arch in teleosts. +is_a: UBERON:2002085 ! ural centrum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002161 +name: ural centrum 4 +namespace: uberon/phenoscape-anatomy +def: "A vertebral centrum that is located immediately posterior to ural centrum 3 (polyural terminology) and may fuse to ural centrum 3 early in ontogeny. Ural centrum 4 articulates with hypural 4 ventrally. Ural centrum 4 is an unpaired median bone." [TAO:GA_TG] +comment: Ural centrum 4 lacks a neural arch in teleosts. +is_a: UBERON:2002085 ! ural centrum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002162 +name: ural vertebra +namespace: uberon/phenoscape-anatomy +def: "Vertebra that is incomplete or rudimentary and may bear a rudimentary neural arch and sometimes a rudimentary spine or the neural arch and spine are completely absent. Ural vertebrae are one of the last bony elements of the vertebral column, usually smaller than the preural centra. Ural vertebrae are numbered beginning from anterior (1) to posterior (2, 3, 4, etc.). Ural vertebra is an unpaired median bone." [TAO:GA_TG] +is_a: UBERON:0001095 ! caudal vertebra +is_a: UBERON:0004376 ! fin bone +relationship: part_of UBERON:4000167 ! caudal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002163 +name: ural vertebra 1 +namespace: uberon/phenoscape-anatomy +def: "Ural vertebra that is located directly posterior to preural centrum 1. It may bear a rudimentary neural arch and sometimes a rudimentary spine or the neural arch and spine are completely absent and it may articulate or fuse with hypural 1 (polyural terminology). Ural vertebra 1 is an unpaired median bone." [TAO:GA_TG] +comment: Ural vertebrae 1 may be defined also as the first ural vertebrae bearing hypurals 1 and 2 (diural terminology). +is_a: UBERON:2002162 ! ural vertebra +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002164 +name: caudal principal ray set +namespace: uberon/phenoscape-anatomy +def: "Anatomical cluster including all segmented-and-branched rays plus one unbranched but segmented ray located at the leading margin in each lobe of the caudal fin (Hubbs and Lagler, 1947) and that associates with endoskeletal elements such as hypurals and hemal spines of preural centra 1 and 2 (Arratia, 2008). Caudal principal rays are counted from the dorsalmost one ventrally. Caudal principal rays are unpaired median bones." [TAO:GA_TG] +comment: In basal teleosts the number of caudal principal rays is about 20. A decreasing of the number of the branched-and segmented rays is observed in more advanced teleosts (see Schultze and Arratia, 1989; Arratia, 1991, 2008). The presence of marginal principal caudal rays as long or longer than the branched-and-segmented principal rays is a synapomorphy of teleosts (Arratia, 2008, 2009). +synonym: "branched caudal rays" EXACT [TAO:0002164] +synonym: "caudal principal lepidotrichia" EXACT PLURAL [TAO:0002164] +is_a: UBERON:0000477 ! anatomical cluster +relationship: composed_primarily_of UBERON:2001585 ! caudal principal ray +relationship: part_of UBERON:4000167 ! caudal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002165 +name: caudal procurrent ray set +namespace: uberon/phenoscape-anatomy +def: "An anatomical cluster of short rays, shorter than the principal ones, which form the anterior dorsal and ventral series of lepidotrichia of the caudal fin that may be associated with neural spines, epurals and uroneurals (dorsal series) and haemal spines of preural vertebrae (ventral series) (Arratia, 2008). The anteriormost procurrent rays are commonly unsegmented, but the posteriormost ones are usually segmented. The procurrent rays are numbered from caudal to rostral direction. The caudal procurrent ray series is an unpaired median series." [TAO:Arratia_2008, TAO:GA_TG] +synonym: "caudal precurrent rays" EXACT [TAO:0002165] +synonym: "caudal spiny rays" EXACT [TAO:0002165] +synonym: "rudimentary rays" EXACT [TAO:0002165] +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:4000167 ! caudal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002166 +name: pseudourostyle +namespace: uberon/phenoscape-anatomy +def: "An elongate lateral process ventrally placed to the proximal region of the pleurostyle. The pseudourostyle is paired." [TAO:GA_TG] +comment: The pseudourostyle occurs only in certain teleost subgroups. It may be well developed in certain characiforms. +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2002084 ! pleurostyle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002167 +name: stegural +namespace: uberon/phenoscape-anatomy +alt_id: UBERON:2002081 +def: "Modified neural arch, probably of ural centrum 4, formed by a bony base that may extend along the dorso-lateral surfaces of ural centra and preural centra 1 or 2 and by a well-developed antero-dorsal membranous projection that extends lateral to the base of epural(s) and anterior toward the neural arches and/or spines of preural centra 1 or 2 (Arratia and Schultze, 1992). The stegural is a paired bone." [TAO:GA_TG] +comment: It is unclear if the structure named stegural is homologous among teleost subgroups. +synonym: "uroneural" RELATED [TAO:0002167] +is_a: UBERON:2000602 ! uroneural +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002168 +name: preural centrum 1 + ural centrum 1 + ural centrum 2 +namespace: uberon/phenoscape-anatomy +def: "Urostyle that is the result of fusion of preural centrum 1 with ural centra 1 and 2." [TAO:wd] +is_a: UBERON:0003106 ! urostyle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002172 +name: branchial mesenchyme +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001650 +is_a: UBERON:0005253 ! head mesenchyme +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002174 +name: octaval nerve motor nucleus +namespace: uberon/phenoscape-anatomy +def: "Hindbrain nucleus which consists of cell bodies whose axons exit the hindbrain via cranial nerve VIII and innervate hair cells of the lateral line and inner ear. The neurons of these nuclei are unusual in that they extend both contra- and ipsilateral dendrites." [PMID:17182783] +xref: ZFA:0001697 +is_a: UBERON:0000126 ! cranial nerve nucleus +is_a: UBERON:0007635 ! nucleus of medulla oblongata +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002175 +name: rostral octaval nerve motor nucleus +namespace: uberon/phenoscape-anatomy +synonym: "ROLE" EXACT [TAO:0002175] +synonym: "rostral cranial nerve VIII motor nucleus" EXACT [TAO:0002175] +xref: ZFA:0001698 +is_a: UBERON:2002174 ! octaval nerve motor nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002176 +name: caudal octaval nerve motor nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001699 +is_a: UBERON:2002174 ! octaval nerve motor nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002179 +name: obsolete peripheral nucleus of ventral telencephalon +namespace: uberon/phenoscape-anatomy +def: "Telencephalic nucleus which has migrated away from the ependyma and consists of the central, lateral nuclei and the dorsal and ventral entopeduncular nuclei. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] +xref: ZFA:0001667 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002180 +name: obsolete central nucleus of ventral telencephalon +namespace: uberon/phenoscape-anatomy +def: "Peripheral nucleus of the ventral telencephalon which is located immediately lateral to the dorsal nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] +synonym: "area ventralis telencephali, nucleus centralis" EXACT [TAO:0002180] +xref: ZFA:0001668 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002185 +name: climbing fiber +namespace: uberon/phenoscape-anatomy +def: "Portion of tissue that consists of afferent axons from the inferior olive and synapsing with Purkinje cells within the molecular layer of the valvula cerebelli and corpus cerebelli." [ISBN:3764351209, ZFIN:ZDB-PUB-090422-9] +xref: ZFA:0001711 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:2000188 ! corpus cerebelli +relationship: part_of UBERON:2000603 ! valvula cerebelli +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002192 +name: dorsolateral motor nucleus of vagal nerve +namespace: uberon/phenoscape-anatomy +def: "Motor nucleus of vagal nerve that is located within the dorsolateral portion of rhomobomere 8." [ZFIN:ZDB-PUB-090417-11] +synonym: "dlX" EXACT [TAO:0002192] +xref: ZFA:0001695 +is_a: UBERON:2000297 ! vagal lobe +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002193 +name: dorsolateral septum +namespace: uberon/phenoscape-anatomy +def: "Portion of tissue that grows in from the dorsolateral wall of the otic vesicle, forming a dorsolateral partition between the developing anterior and posterior semicircular canals." [ZFIN:ZDB-PUB-961014-383] +synonym: "dorsal bar" RELATED [TAO:0002193] +xref: ZFA:0001672 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001841 ! anterior semicircular canal +relationship: part_of UBERON:0001842 ! posterior semicircular canal +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002195 +name: epidermal placode +namespace: uberon/phenoscape-anatomy +def: "Portion of tissue that is a thickening and reshaping of the epidermal basal stratum cells beneath which fibroblasts accumulate to form the scale primordium." [ZFIN:ZDB-PUB-081008-12] +xref: ZFA:0001703 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0002025 ! stratum basale of epidermis +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002198 +name: obsolete head muscle +namespace: uberon/phenoscape-anatomy +def: "Muscle which is part of the head." [ZFIN:curator] +synonym: "cephalic muscle" EXACT [TAO:0002198] +is_obsolete: true +replaced_by: UBERON:0002376 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002199 +name: obsolete hindbrain commissure +namespace: uberon/phenoscape-anatomy +def: "CNS white matter that crosses the midline within the hindbrain." [ZFIN:ZDB-PUB-090417-11] +xref: ZFA:0001692 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002200 +name: hypobranchial muscle +namespace: uberon/phenoscape-anatomy +def: "Head muscle that originates on the anterior region of the cleithrum and inserts on the urohyal. The hypobranchial forms initially as left and right parts that later fuse together forming a cone shape." [ZFIN:ZDB-PUB-080306-33] +synonym: "sternohyoideus" RELATED [TAO:0002200] +xref: ZFA:0001651 +is_a: UBERON:0002376 ! cranial muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002202 +name: intermediate nucleus +namespace: uberon/phenoscape-anatomy +def: "Diencephalic nucleus which is located between the dorsal hypothalamus and the caudal tuberal nucleus and does not contain tyrosine hydroxylase immunoreactive cells." [ZFIN:ZDB-PUB-001220-2] +xref: ZFA:0001669 +is_a: UBERON:0006569 ! diencephalic nucleus +relationship: part_of UBERON:2000633 ! caudal tuberculum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002203 +name: obsolete immature Schwann cell +namespace: uberon/phenoscape-anatomy +comment: Range covers Schwann cell precursor and immature Schwann cell, should be split and put into CL. +xref: ZFA:0001725 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002204 +name: obsolete lateral nucleus of ventral telencephalon +namespace: uberon/phenoscape-anatomy +def: "Peripheral nucleus of the ventral telencephalon that has migrated to the periphery of the brain. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] +synonym: "area ventralis telencephali, nucleus lateralis" EXACT [TAO:0002204] +xref: ZFA:0000176 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002206 +name: macula communis +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001671 +is_a: UBERON:0006937 ! inner ear epithelium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002207 +name: medial motor nucleus of vagal nerve +namespace: uberon/phenoscape-anatomy +synonym: "mmX" EXACT [TAO:0002207] +xref: ZFA:0001696 +is_a: UBERON:2000297 ! vagal lobe +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002208 +name: obsolete mesonephric podocyte +namespace: uberon/phenoscape-anatomy +def: "Podocyte that is part of the kidney (mesonephros)." [ZFIN:curator] +xref: ZFA:0001674 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002210 +name: mossy fiber +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001710 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:2000188 ! corpus cerebelli +relationship: part_of UBERON:2000603 ! valvula cerebelli +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002213 +name: obsolete optic nerve head +namespace: uberon/phenoscape-anatomy +def: "Portion of cranial nerve II where large fasicles of axons from the optic fiber layer come together prior to leaving the eye." [ZFIN:curator] +comment: removed axiom: part_of some 'cranial nerve II' +synonym: "optic nerve heads" EXACT PLURAL [TAO:0002213] +xref: ZFA:0001625 +is_obsolete: true +replaced_by: UBERON:0001783 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002214 +name: os suspensorium medial flange +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001599 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:2000461 ! Weberian ossicle +relationship: part_of UBERON:2001171 ! os suspensorium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002215 +name: otic vesicle protrusion +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001715 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0003051 ! ear vesicle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002216 +name: otic vesicle ventral protrusion +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001716 +is_a: UBERON:2002215 ! otic vesicle protrusion +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002217 +name: parasphenoid-pterosphenoid joint +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0004745 ! parasphenoid +intersection_of: connects UBERON:2000419 ! pterosphenoid +relationship: connects UBERON:0004745 ! parasphenoid +relationship: connects UBERON:2000419 ! pterosphenoid +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002218 +name: parallel fiber +namespace: uberon/phenoscape-anatomy +synonym: "parallel fibers" EXACT PLURAL [TAO:0002218] +xref: ZFA:0001713 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:2000394 ! molecular layer corpus cerebelli +relationship: part_of UBERON:2000913 ! molecular layer valvula cerebelli +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002219 +name: parvocellular preoptic nucleus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001680 +is_a: UBERON:0006569 ! diencephalic nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002221 +name: pericardial muscle +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001653 +is_a: UBERON:0001630 ! muscle organ +is_a: UBERON:0005177 ! trunk region element +relationship: part_of UBERON:0001774 ! skeletal muscle of trunk +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002222 +name: obsolete periventricular nucleus of ventral telencephalon +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001666 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002223 +name: pillar of the semicircular canal +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001717 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001840 ! semicircular canal +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002224 +name: pleuroperitoneal cavity +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001656 +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0002323 ! coelemic cavity lumen +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002225 +name: posterior pronephric duct +namespace: uberon/phenoscape-anatomy +synonym: "posterior pronephric ducts" EXACT PLURAL [TAO:0002225] +xref: ZFA:0001623 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0006553 ! renal duct +relationship: part_of UBERON:0003060 ! pronephric duct +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002226 +name: preglomerular nucleus +namespace: uberon/phenoscape-anatomy +def: "Diencephalic nucleus which is located in the caudal tuberculum. The preglomerular nuclei make up most of the migrated nuclei within the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [ZFIN:curator] +xref: ZFA:0001662 +is_a: UBERON:0006569 ! diencephalic nucleus +relationship: part_of UBERON:2000633 ! caudal tuberculum +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002229 +name: presumptive atrium primitive heart tube +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001721 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0005498 ! primitive heart tube +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002232 +name: presumptive cardiac ventricle primitive heart tube +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001720 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0005498 ! primitive heart tube +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002235 +name: presumptive ventral mesoderm +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001714 +is_a: UBERON:0006603 ! presumptive mesoderm +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002237 +name: obsolete pronephric podocyte +namespace: uberon/phenoscape-anatomy +def: "Podocyte that is part of the pronephros." [ZFIN:curator] +xref: ZFA:0001673 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002240 +name: Purkinje cell layer corpus cerebelli +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001706 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:2000188 ! corpus cerebelli +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002241 +name: Purkinje cell layer valvula cerebelli +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001709 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:2000603 ! valvula cerebelli +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002242 +name: scale primordium +namespace: uberon/phenoscape-anatomy +xref: ZFA:0001704 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0001048 ! primordium +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0002067 ! dermis +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002244 +name: supraoptic tract +namespace: uberon/phenoscape-anatomy +synonym: "SOT" EXACT [TAO:0002244] +xref: ZFA:0001657 +is_a: UBERON:0003544 ! brain white matter +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002248 +name: supratemporal commissure +namespace: uberon/phenoscape-anatomy +def: "Lateral line canal that that crosses the supratemporal region posterior to the openings of the endolymphatic ducts and connects the lateral canals of each side." [DOI: 10.1002/cne.900280102] +comment: Not clear what the taxon constraints are here. The cited reference discusses two species of dogfish. +is_a: UBERON:1500003 ! lateral line canal lumen +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002249 +name: ctenius +namespace: uberon/phenoscape-anatomy +synonym: "ctenii" EXACT PLURAL [TAO:0002249] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0013703 ! integumentary projection +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2002273 ! ctenoid scale +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002250 +name: epural 2 +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2000660 ! epural +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002251 +name: epural 3 +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2000660 ! epural +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002252 +name: epural 1 +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2000660 ! epural +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002253 +name: obsolete pyloric caecum +namespace: uberon/phenoscape-anatomy +synonym: "pyloric appendage" EXACT [TAO:0002253] +is_obsolete: true +consider: UBERON:0008248 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002255 +name: ocular side +namespace: uberon/phenoscape-anatomy +def: "Organism subdivision that is the side of the body possessing eyes." [TAO:wd] +synonym: "eyed side" EXACT [TAO:0002255] +is_a: UBERON:0000475 ! organism subdivision +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002256 +name: blind side +namespace: uberon/phenoscape-anatomy +def: "Organism subdivision that is the side of the body lacking eyes." [TAO:wd] +is_a: UBERON:0000475 ! organism subdivision +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002257 +name: premaxilla dentigerous process +namespace: uberon/phenoscape-anatomy +synonym: "premaxilla alveolar process" EXACT [TAO:0002257] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002244 ! premaxilla +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002258 +name: trituration tooth +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0001091 ! calcareous tooth +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002260 +name: premaxillary-maxillary joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the premaxilla and maxilla. Premaxillary-maxillary joint is paired." [TAO:wd] +is_a: UBERON:2001950 ! inter-premaxillary joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0002244 ! premaxilla +intersection_of: connects UBERON:0002397 ! maxilla +relationship: connects UBERON:0002397 ! maxilla +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002261 +name: dorsal fin spine +namespace: uberon/phenoscape-anatomy +synonym: "dorsal spine" RELATED [] +is_a: UBERON:4000177 ! dorsal fin lepidotrichium +is_a: UBERON:4200070 ! median fin spine +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002262 +name: anal fin spine +namespace: uberon/phenoscape-anatomy +is_a: UBERON:4000176 ! anal fin lepidotrichium +is_a: UBERON:4200070 ! median fin spine +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002263 +name: epineural 1 +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2000507 ! epineural +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002264 +name: epineural 2 +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2000507 ! epineural +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002265 +name: epineural 3 +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2000507 ! epineural +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002266 +name: epineural 4 +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2000507 ! epineural +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002267 +name: epineural 5 +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2000507 ! epineural +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002268 +name: epineural 6 +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2000507 ! epineural +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002269 +name: interarcual cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal arch cartilage located between uncinate process of epibranchial 1 and pharyngobranchial 2." [TAO:wd] +comment: An interarcual cartilage is present in percomorph fishes (Johnson and Patterson 1993). +synonym: "IAC" EXACT [TAO:0002269] +is_a: UBERON:0011004 ! pharyngeal arch cartilage +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002270 +name: pelvic fin spine +namespace: uberon/phenoscape-anatomy +synonym: "pelvic spine" EXACT [TAO:0002270] +is_a: UBERON:4000173 ! pelvic fin lepidotrichium +is_a: UBERON:4500009 ! paired fin spine +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002271 +name: ventral caudal procurrent ray 2 +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2001830 ! caudal fin ventral procurrent ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002272 +name: ventral caudal procurrent ray 1 +namespace: uberon/phenoscape-anatomy +is_a: UBERON:2001830 ! caudal fin ventral procurrent ray +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002273 +name: ctenoid scale +namespace: uberon/phenoscape-anatomy +def: "Scale that possesses cteni (discrete spines)." [TAO:wd] +is_a: UBERON:0007380 ! dermal scale +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002274 +name: transforming ctenoid scale +namespace: uberon/phenoscape-anatomy +def: "Ctenoid scale with two or three alternating rows of cteni marginally and truncated cteni submarginally. (Roberts 1993)." [TAO:wd] +is_a: UBERON:2002273 ! ctenoid scale +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002275 +name: Jakubowski's organ +namespace: uberon/phenoscape-anatomy +def: "Neuromast of the supraorbital sensory canal in the nasal bone. It is innervated by the buccal nerve rather than by the supraorbital nerve, which invariably innervates neuromasts of the supraorbital canal. (Johnson and Patterson 1993)." [TAO:wd] +is_a: UBERON:0008904 ! neuromast +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002276 +name: obsolete median fin +namespace: uberon/phenoscape-anatomy +def: "Fin that is an unpaired fin located in the sagittal plane of the organism." [TAO:wd] +synonym: "nageoire impaire" EXACT [PSPUB:0000164] +synonym: "périssoptérygie" EXACT [PSPUB:0000140] +is_obsolete: true +replaced_by: VSAO:0000162 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002277 +name: pectoral fin distal radial bone 1 +namespace: uberon/phenoscape-anatomy +def: "pectoral fin distal radial 1 element that is composed of bone tissue." [OBOL:automatic] +is_a: UBERON:2001588 ! pectoral fin distal radial bone +is_a: UBERON:2102277 ! pectoral fin distal radial element 1 +intersection_of: UBERON:2102277 ! pectoral fin distal radial element 1 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2202277 ! pectoral fin distal radial cartilage 1 + +[Term] +id: UBERON:2002279 +name: pectoral fin distal radial bone 2 +namespace: uberon/phenoscape-anatomy +def: "pectoral fin distal radial 2 element that is composed of bone tissue." [OBOL:automatic] +is_a: UBERON:2001588 ! pectoral fin distal radial bone +is_a: UBERON:2102279 ! pectoral fin distal radial element 2 +intersection_of: UBERON:2102279 ! pectoral fin distal radial element 2 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2202279 ! pectoral fin distal radial cartilage 2 + +[Term] +id: UBERON:2002280 +name: pectoral fin distal radial bone 3 +namespace: uberon/phenoscape-anatomy +def: "pectoral fin distal radial 3 element that is composed of bone tissue." [OBOL:automatic] +is_a: UBERON:2001588 ! pectoral fin distal radial bone +is_a: UBERON:2102280 ! pectoral fin distal radial element 3 +intersection_of: UBERON:2102280 ! pectoral fin distal radial element 3 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2202280 ! pectoral fin distal radial cartilage 3 + +[Term] +id: UBERON:2002281 +name: retractor posttemporalis +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0002376 ! cranial muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002282 +name: preopercle-opercle joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the preopercle and opercle. Preopercle-opercle joint is paired." [TAO:wd] +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:2000250 ! opercle +intersection_of: connects UBERON:2000264 ! preopercle +relationship: connects UBERON:2000250 ! opercle +relationship: connects UBERON:2000264 ! preopercle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002283 +name: melanophore spot +namespace: uberon/phenoscape-anatomy +synonym: "spot" EXACT [TAO:0002283] +synonym: "spots" EXACT PLURAL [TAO:0002283] +is_a: UBERON:2002284 ! body marking +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002284 +name: body marking +namespace: uberon/phenoscape-anatomy +def: "Surface structure that is a visible mark on the body resulting from pigmentation." [TAO:wd] +synonym: "markings" EXACT PLURAL [TAO:0002284] +is_a: UBERON:3000961 ! external integument structure +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002285 +name: cycloid scale +namespace: uberon/phenoscape-anatomy +def: "Scale that is smooth-edged, round or oval and composed of acellular dermal bone lacking small spines on the posterior exposed edge. (from http://www.briancoad.com/Dictionary/introduction.htm)." [TAO:wd] +comment: Typical of many teleosts. Some cycloid scales may have a serrated margin and are then termed spinoid scales. (from http://www.briancoad.com/Dictionary/introduction.htm). +is_a: UBERON:0007380 ! dermal scale +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002288 +name: obsolete aqueous humor +namespace: uberon/phenoscape-anatomy +def: "Clear ocular fluid in the anterior segment of the eye. It is produced primarily by dorsal ciliary epithelial cells." [ZFIN:ZDB-PUB-050701-15] +xref: ZFA:0005564 +is_obsolete: true +replaced_by: UBERON:0001796 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002289 +name: obsolete sclera +namespace: uberon/phenoscape-anatomy +def: "Multi-tissue structure that composes the opaque fibrous outer layer of the eye." [ZFIN:ZDB-PUB-050701-15] +is_obsolete: true +replaced_by: UBERON:0001773 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002290 +name: obsolete vitreous +namespace: uberon/phenoscape-anatomy +def: "Portion of organism substance that is a gelatinous extracellular matrix structure that fills the vitreous cavity of the eye." [PMID:18344966] +xref: ZFA:0005561 +is_obsolete: true +replaced_by: UBERON:0001797 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002291 +name: fulcrum +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that is typically associated with a fin. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235." [PSPUB:0000171, TAO:wd] +is_a: UBERON:0004376 ! fin bone +is_a: UBERON:0008907 ! dermal bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002292 +name: epaxial basal fulcrum +namespace: uberon/phenoscape-anatomy +def: "Basal fulcrum that is positioned at the dorsal or anterodorsal margin of the caudal fin. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235." [PSPUB:0000171, TAO:wd] +synonym: "dorsal basal fulcra" RELATED PLURAL [TAO:0002292] +synonym: "dorsal basal fulcrum" EXACT [TAO:0002292] +synonym: "epaxial basal fulcra" RELATED PLURAL [TAO:0002292] +is_a: UBERON:2002082 ! basal fulcrum +relationship: part_of UBERON:4000167 ! caudal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002293 +name: hypaxial basal fulcrum +namespace: uberon/phenoscape-anatomy +def: "Basal fulcrum that is positioned at the anteroventral margin of the caudal fin. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235." [PSPUB:0000171, TAO:wd] +synonym: "hypaxial basal fulcra" EXACT PLURAL [TAO:0002293] +synonym: "ventral basal fulcra" EXACT PLURAL [TAO:0002293] +synonym: "ventral basal fulcrum" EXACT [TAO:0002293] +is_a: UBERON:2002082 ! basal fulcrum +relationship: part_of UBERON:4000167 ! caudal fin skeleton +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2002294 +name: fish scute +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that is an unpaired, scale-like structure. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235." [PSPUB:0000171, TAO:wd] +comment: temporarily relabeled 'fish scute' to distinguish from reptilian scute class. To DO: reconcile definitions for the two sets of classes. +synonym: "ridge scale" EXACT [TAO:0002294] +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:0002416 ! integumental system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005000 +name: basal communicating artery +namespace: uberon/phenoscape-anatomy +synonym: "BCA" EXACT [TAO:0005000] +xref: ZFA:0005000 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003496 ! head blood vessel +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005010 +name: mid cerebral vein +namespace: uberon/phenoscape-anatomy +def: "The mesencephalic veins (MsV) enter the mid cerebral veins (MCeV) at the dorsal midline. THe MCeVs originate at the dorsal midline, proceede lateraly in a ventral direction to drain into the paired primordial midbrain channels (PHBC). ogai et al. 2001., Kimmel et al. 1993" [ZFIN:curator] +synonym: "MCeV" EXACT [TAO:0005010] +synonym: "mid-cerebral vein" EXACT [TAO:0005010] +synonym: "middle cerebral vein" EXACT [TAO:0005010] +xref: ZFA:0005010 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005011 +name: pseudobranchial artery +namespace: uberon/phenoscape-anatomy +def: "A vascular loop attached to the efferent part of the mandibular arch that forms at 3.5 dpf. Isogai et al. 2001." [ZFIN:curator] +xref: ZFA:0005011 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0003118 ! pharyngeal arch artery 1 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005012 +name: afferent filamental artery +namespace: uberon/phenoscape-anatomy +synonym: "AFA" EXACT [TAO:0005012] +synonym: "afferent filamental arteries" EXACT PLURAL [TAO:0005012] +xref: ZFA:0005012 +is_a: UBERON:0003469 ! respiratory system artery +is_a: UBERON:0003496 ! head blood vessel +relationship: part_of UBERON:2000666 ! filamental artery +relationship: part_of UBERON:2000716 ! afferent portion of pharyngeal arch artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005013 +name: concurrent branch afferent branchial artery +namespace: uberon/phenoscape-anatomy +def: "The branch of the afferent branchial artery that continues posteriodorsally. Isogai et al. 2001." [ZFIN:curator] +synonym: "CCB" EXACT [TAO:0005013] +xref: ZFA:0005013 +is_a: UBERON:0003469 ! respiratory system artery +is_a: UBERON:0003496 ! head blood vessel +relationship: part_of UBERON:2000716 ! afferent portion of pharyngeal arch artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005014 +name: recurrent branch afferent branchial artery +namespace: uberon/phenoscape-anatomy +def: "The anterioventral proceeding branch of the afferent branchial artery. Isogai et al. 2001." [ZFIN:curator] +synonym: "RCB" EXACT [TAO:0005014] +synonym: "recurrent branch afferent branchial arteries" EXACT PLURAL [TAO:0005014] +xref: ZFA:0005014 +is_a: UBERON:0003469 ! respiratory system artery +is_a: UBERON:0003496 ! head blood vessel +relationship: part_of UBERON:2000716 ! afferent portion of pharyngeal arch artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005015 +name: afferent lamellar arteriole +namespace: uberon/phenoscape-anatomy +synonym: "afferent lamellar arterioles" EXACT PLURAL [TAO:0005015] +synonym: "AFL" EXACT [TAO:0005015] +xref: ZFA:0005015 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0003469 ! respiratory system artery +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:2000211 ! gill lamella +relationship: part_of UBERON:2005012 ! afferent filamental artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005017 +name: primordial midbrain channel +namespace: uberon/phenoscape-anatomy +def: "The vessel between the anterior cerebral vein and the mid cerebral vein. Isogai et al. 2001." [ZFIN:curator] +synonym: "PMBC" EXACT [TAO:0005017] +xref: ZFA:0005017 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005018 +name: efferent filamental artery +namespace: uberon/phenoscape-anatomy +synonym: "EFA" EXACT [TAO:0005018] +xref: ZFA:0005018 +is_a: UBERON:0003469 ! respiratory system artery +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0003920 ! venous blood vessel +relationship: part_of UBERON:2000202 ! efferent portion of pharyngeal arch artery +relationship: part_of UBERON:2000666 ! filamental artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005019 +name: efferent lamellar arteriole +namespace: uberon/phenoscape-anatomy +synonym: "efferent lamellar arterioles" EXACT PLURAL [TAO:0005019] +synonym: "ELA" EXACT [TAO:0005019] +xref: ZFA:0005019 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0003469 ! respiratory system artery +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0003920 ! venous blood vessel +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:2000211 ! gill lamella +relationship: part_of UBERON:2005018 ! efferent filamental artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005020 +name: central artery +namespace: uberon/phenoscape-anatomy +def: "Arteries that irrigate the forebrain and midbrain Isogai et al. 2001." [ZFIN:curator] +synonym: "CtA" EXACT [TAO:0005020] +xref: ZFA:0005020 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003499 ! brain blood vessel +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005021 +name: cerebellar central artery +namespace: uberon/phenoscape-anatomy +def: "Extend upward from the PCS, branch to provide an arterial feed to the hindbrain, then drain back down into the PHBC Isogai et al. 2001." [ZFIN:curator] +synonym: "CCtA" EXACT [TAO:0005021] +xref: ZFA:0005021 +is_a: UBERON:2005020 ! central artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005022 +name: opercular artery +namespace: uberon/phenoscape-anatomy +def: "The opercular artery arises from the hyoid stump on the first aortic arch, then follows the lateral margin of the operculum (gill covering) ventrally to reconnect into the proximal part of the first aortic arch. Isogai et al. 2001." [ZFIN:curator] +synonym: "external carotid artery" RELATED [TAO:0005022] +synonym: "ORA" EXACT [TAO:0005022] +xref: ZFA:0005022 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0003119 ! pharyngeal arch artery 2 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005025 +name: dorsal longitudinal anastomotic vessel +namespace: uberon/phenoscape-anatomy +def: "Trunk vessel that connects to the primitive hindbrain channel and the basilar artery at the caudal end of the medulla oblongata. Isogai et al. 2001." [ZFIN:curator] +synonym: "DLAV" EXACT [TAO:0005025] +xref: ZFA:0005025 +is_a: UBERON:0003513 ! trunk blood vessel +is_a: UBERON:0003524 ! tail blood vessel +relationship: part_of UBERON:0002201 ! vasculature of trunk +relationship: part_of UBERON:0010204 ! tail vasculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005026 +name: primary head sinus +namespace: uberon/phenoscape-anatomy +def: "Main route for venous drainage of the anterior and mid cerebral veins as well as portions of the primordial hindbrain channel. Isogai et al. 2001." [ZFIN:curator] +synonym: "lateral head vein" EXACT [TAO:0005026] +synonym: "PHS" EXACT [TAO:0005026] +xref: ZFA:0005026 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005027 +name: posterior cerebral vein +namespace: uberon/phenoscape-anatomy +def: "Vein that drains the dorsal longitudinal vessel and the caudal portions of the venous capillary network of the medulla oblongata. Isogai et al. 2001." [ZFIN:curator] +synonym: "caudal cerebral vein" EXACT [TAO:0005027] +synonym: "PCeV" EXACT [TAO:0005027] +xref: ZFA:0005027 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005029 +name: rostral blood island +namespace: uberon/phenoscape-anatomy +def: "Hematopoietic tissue derived from the cephalic mesoderm. Predominantly produces myeloid cells. de Jong and Zon 2005." [ZFIN:curator] +synonym: "RBI" EXACT [TAO:0005029] +xref: ZFA:0005029 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: develops_from UBERON:0009881 ! anterior lateral plate mesoderm +relationship: part_of UBERON:0002390 ! hematopoietic system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005030 +name: dorsal ciliary vein +namespace: uberon/phenoscape-anatomy +synonym: "DCV" EXACT [TAO:0005030] +xref: ZFA:0005030 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +relationship: develops_from UBERON:2005082 ! dorsal branch nasal ciliary artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005031 +name: dorsal longitudinal vein +namespace: uberon/phenoscape-anatomy +def: "Vessel that connects to the primitive hindbrain channel and the basilar artery at the caudal end of the medulla oblongata. Isogai et al. 2001." [ZFIN:curator] +synonym: "DLV" EXACT [TAO:0005031] +xref: ZFA:0005031 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003499 ! brain blood vessel +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005032 +name: optic vein +namespace: uberon/phenoscape-anatomy +def: "Vein that connects to the hyaloid vein that drains the eye. External to eye. Isogai et al. 2001." [ZFIN:curator] +synonym: "OV" EXACT [TAO:0005032] +xref: ZFA:0005032 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005034 +name: parachordal vessel +namespace: uberon/phenoscape-anatomy +def: "Vessels run longitudinally along the horizontal myoseptum. These vessels are not functional until after lumenization which occurs near 4 dpf. Isogai et al. 2003." [ZFIN:curator] +synonym: "PAV" EXACT [TAO:0005034] +xref: ZFA:0005034 +is_a: UBERON:0003481 ! tail vein +is_a: UBERON:0003513 ! trunk blood vessel +relationship: develops_from UBERON:0002065 ! posterior cardinal vein +relationship: develops_from UBERON:0007679 ! intersomitic vein +relationship: part_of UBERON:0002201 ! vasculature of trunk +relationship: part_of UBERON:0010204 ! tail vasculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005036 +name: supraintestinal artery +namespace: uberon/phenoscape-anatomy +def: "A continuation of the anterior mesenteric artery, which branches out from the dorsal aorta just caudal to the pronephric glomus. Isogai et al. 2001." [ZFIN:curator] +synonym: "SIA" EXACT [TAO:0005036] +xref: ZFA:0005036 +is_a: UBERON:0001637 ! artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005038 +name: supraintestinal vein +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005038 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003513 ! trunk blood vessel +relationship: part_of UBERON:0002201 ! vasculature of trunk +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005039 +name: anterior lateral mesoderm +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005039 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0003081 ! lateral plate mesoderm +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005040 +name: obsolete posterior lateral mesoderm +namespace: uberon/phenoscape-anatomy +synonym: "PLM" EXACT [TAO:0005040] +xref: ZFA:0005040 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005044 +name: optic artery +namespace: uberon/phenoscape-anatomy +def: "The artery that carries blood to the eye. It branches from the internal carotid artery and enters the eye ventrally through the optic fissure. Isogai et al. 2001." [ZFIN:curator] +xref: ZFA:0005044 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003496 ! head blood vessel +relationship: supplies UBERON:0000019 ! camera-type eye +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005048 +name: primitive prosencephalic artery +namespace: uberon/phenoscape-anatomy +def: "Vessel that branches from cranial division of the internal carotid artery, extending laterally around the rostral end of the head. Isogai et al. 2001." [ZFIN:curator] +synonym: "PPrA" EXACT [TAO:0005048] +xref: ZFA:0005048 +is_a: UBERON:0001637 ! artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005049 +name: prosencephalic artery +namespace: uberon/phenoscape-anatomy +def: "After the primitive prosencephalic artery forms it becomes disconnected from the cranial division of the internal carotid artery and instead it connects to the anterior mesencephalic central artery and the communicating vessels of the palatocerebral artery." [ZFIN:curator] +synonym: "PrA" EXACT [TAO:0005049] +xref: ZFA:0005049 +is_a: UBERON:0001637 ! artery +relationship: develops_from UBERON:2005048 ! primitive prosencephalic artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005050 +name: palatocerebral artery +namespace: uberon/phenoscape-anatomy +def: "The PLA branches ventrally from the CrDI. It extends rostrally along the base of mid- and forebrain, then loops medially and links to the corresponding vessel from the other side of the embryo. Isogai et al. 2001." [ZFIN:curator] +synonym: "PLA" EXACT [TAO:0005050] +xref: ZFA:0005050 +is_a: UBERON:0001637 ! artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005051 +name: communicating vessel palatocerebral artery +namespace: uberon/phenoscape-anatomy +def: "Connect the palatocerebral artery with the prosencephalic artery. Isogai et al. 2001." [ZFIN:curator] +synonym: "CMV" EXACT [TAO:0005051] +synonym: "communicating vessels" EXACT [TAO:0005051] +xref: ZFA:0005051 +is_a: UBERON:0001637 ! artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005052 +name: anterior mesencephalic central artery +namespace: uberon/phenoscape-anatomy +def: "Arteries that irrigate rostral regions of the midbrain. They extend between the Basial communicating artery to the anterior cerebral vein. Isogai et al. 2001." [ZFIN:curator] +synonym: "AMCtA" EXACT [TAO:0005052] +synonym: "rostral mesencephalic central artery" EXACT [TAO:0005052] +xref: ZFA:0005052 +is_a: UBERON:2005020 ! central artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005053 +name: nasal ciliary artery +namespace: uberon/phenoscape-anatomy +synonym: "NCA" EXACT [TAO:0005053] +xref: ZFA:0005053 +is_a: UBERON:0001637 ! artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005054 +name: inner optic circle +namespace: uberon/phenoscape-anatomy +synonym: "IOC" EXACT [TAO:0005054] +xref: ZFA:0005054 +is_a: UBERON:0002203 ! vasculature of eye +relationship: develops_from UBERON:2005082 ! dorsal branch nasal ciliary artery +relationship: develops_from UBERON:2005083 ! ventral branch nasal ciliary artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005055 +name: median palatocerebral vein +namespace: uberon/phenoscape-anatomy +def: "Drains the PLA loop proceeds straight caudally along the cranial midline just above the pharynx, just below the diencephalon. Forms a 'T' with the palatocerebral veins. Isogai et al. 2001." [ZFIN:curator] +synonym: "MPLV" EXACT [TAO:0005055] +xref: ZFA:0005055 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005056 +name: palatocerebral vein +namespace: uberon/phenoscape-anatomy +def: "Vein that drains the median palatocerebral vein into the optic vein. Isogai et al. 2001." [ZFIN:curator] +synonym: "PLV" EXACT [TAO:0005056] +xref: ZFA:0005056 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005066 +name: bulbus arteriosus outer layer +namespace: uberon/phenoscape-anatomy +def: "Composed of scattered layers of interrupted elastic lamina. Hu et al. 2001." [ZFIN:curator] +synonym: "bulbus arteriosus externa" EXACT [TAO:0005066] +xref: ZFA:0005066 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0004706 ! bulbus cordis +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005067 +name: bulbus arteriosus middle layer +namespace: uberon/phenoscape-anatomy +def: "Composed of 7-10 layers of helically arranged smooth muscle cells surrounded by a fine network of collagen, reticular, and elastic fibrils. Hu et al. 2001." [ZFIN:curator] +synonym: "bulbus arteriosus media" EXACT [TAO:0005067] +xref: ZFA:0005067 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0004706 ! bulbus cordis +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005068 +name: bulbus arteriosus inner layer +namespace: uberon/phenoscape-anatomy +def: "Composed of subendothelium with longitudinally oriented collagen, reticular fibrils, elastic fibers, and smooth muscle cells bound by a thin endothelial layer. Hu et al. 2001." [ZFIN:curator] +synonym: "bulbus arteriosus intima" EXACT [TAO:0005068] +xref: ZFA:0005068 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0004706 ! bulbus cordis +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005072 +name: endocardial ring +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005072 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0002165 ! endocardium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005073 +name: atrioventricular ring +namespace: uberon/phenoscape-anatomy +synonym: "AV ring" EXACT [TAO:0005073] +xref: ZFA:0005073 +is_a: UBERON:2005072 ! endocardial ring +relationship: part_of UBERON:0002081 ! cardiac atrium +relationship: part_of UBERON:0002082 ! cardiac ventricle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005074 +name: central cardiac conduction system +namespace: uberon/phenoscape-anatomy +def: "Cardiac conduction system, characterized by slow impulse propagation and prolonged refractory periods." [ZFIN:curator] +xref: ZFA:0005074 +is_a: UBERON:0002350 ! conducting system of heart +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005075 +name: peripheral cardiac conduction system +namespace: uberon/phenoscape-anatomy +def: "Portion of the cardiac conduction system, with rapid impulse propagation." [ZFIN:curator] +xref: ZFA:0005075 +is_a: UBERON:0002350 ! conducting system of heart +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005076 +name: obsolete primordial vasculature +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005076 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005078 +name: middle mesencephalic central artery +namespace: uberon/phenoscape-anatomy +def: "Project rostrally and dorsally from the AMCtA to to irrigate the midportion of the midbrain Isogai et al. 2001." [ZFIN:curator] +synonym: "MMCtA" EXACT [TAO:0005078] +xref: ZFA:0005078 +is_a: UBERON:2005020 ! central artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005079 +name: posterior mesencephalic central artery +namespace: uberon/phenoscape-anatomy +def: "Project dorsally from BCA to irrigate the caudal part of midbrain Isogai et al. 2001." [ZFIN:curator] +synonym: "caudal mesencephalic central artery" EXACT [TAO:0005079] +synonym: "PMCtA" EXACT [TAO:0005079] +xref: ZFA:0005079 +is_a: UBERON:2005020 ! central artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005080 +name: anterior mesenteric artery +namespace: uberon/phenoscape-anatomy +def: "Unpaired artery departing from dorsal aorta, typically supplying the small intestine" [ISBN10:0073040584] +synonym: "AMA" EXACT [TAO:0005080] +synonym: "rostral mesenteric artery" EXACT [TAO:0005080] +xref: ZFA:0005080 +is_a: UBERON:0005616 {source="cjm"} ! mesenteric artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005082 +name: dorsal branch nasal ciliary artery +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005082 +is_a: UBERON:0001637 ! artery +relationship: part_of UBERON:2005053 ! nasal ciliary artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005083 +name: ventral branch nasal ciliary artery +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005083 +is_a: UBERON:0001637 ! artery +relationship: part_of UBERON:2005053 ! nasal ciliary artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005084 +name: metencephalic artery +namespace: uberon/phenoscape-anatomy +def: "These arteies branch dorsally from both sides of the posterior communicating artery looping up to join with the opposite MtA as well as with both middle cerebral veins at the dorsal midline of the head. Isogai et al. 2001." [ZFIN:curator] +xref: ZFA:0005084 +is_a: UBERON:0001637 ! artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005085 +name: nasal artery +namespace: uberon/phenoscape-anatomy +def: "The nasal arteries start at the internal carotid artey and travel rostrally, passing along the right and left walls of the nasal sac at the most rostral end of the head. From the nasal sac, the NA flows into the nasal veins. Isogai et al. 2001." [ZFIN:curator] +synonym: "NA" EXACT [TAO:0005085] +xref: ZFA:0005085 +is_a: UBERON:0001637 ! artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005087 +name: pectoral vein +namespace: uberon/phenoscape-anatomy +synonym: "PV" EXACT [TAO:0005087] +xref: ZFA:0005087 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0007300 ! pectoral appendage blood vessel +relationship: part_of UBERON:0007302 ! pectoral appendage vasculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005088 +name: posterior mesenteric artery +namespace: uberon/phenoscape-anatomy +def: "Unpaired artery departing from dorsal aorta that typically supplies the large intestine" [ISBN10:0073040584] +synonym: "caudal mesenteric artery" EXACT [TAO:0005088] +synonym: "PMA" EXACT [TAO:0005088] +xref: ZFA:0005088 +is_a: UBERON:0005616 {source="cjm"} ! mesenteric artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005089 +name: swim bladder artery +namespace: uberon/phenoscape-anatomy +def: "An elaborate set of vessels that branche off caudally from the anterior mesenteric artery just after the dorsal aorta. The SBA vascular loops are located on the ventral side of the swim bladder. Isogai et al. 2001." [ZFIN:curator] +synonym: "SBA" EXACT [TAO:0005089] +xref: ZFA:0005089 +is_a: UBERON:0001637 ! artery +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005093 +name: nasal vein +namespace: uberon/phenoscape-anatomy +synonym: "NV" EXACT [TAO:0005093] +xref: ZFA:0005093 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005097 +name: caudal fin vasculature +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005097 +is_a: UBERON:0007304 ! appendage vasculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005098 +name: central ray artery +namespace: uberon/phenoscape-anatomy +def: "Positioned in the intraray mesenchym between the hemirays of the lepidotrichia,. Huang et al. 2003." [ZFIN:curator] +xref: ZFA:0005098 +is_a: UBERON:0007304 ! appendage vasculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005099 +name: ray vein +namespace: uberon/phenoscape-anatomy +def: "Lie flanking and just lateral to the fin ray, in the interray mesenchyme. Huang et al. 2003." [ZFIN:curator] +xref: ZFA:0005099 +is_a: UBERON:0007304 ! appendage vasculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005100 +name: intervessel commissure +namespace: uberon/phenoscape-anatomy +def: "Vessels that travel between artery and veins or vein and vein in a single ray." [ZFIN:curator] +synonym: "intervessel comisures" EXACT PLURAL [TAO:0005100] +xref: ZFA:0005100 +is_a: UBERON:0007304 ! appendage vasculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005101 +name: interray vessel +namespace: uberon/phenoscape-anatomy +def: "Vessels that travel between veins in adjacent rays." [ZFIN:curator] +synonym: "interray vessels" EXACT PLURAL [TAO:0005101] +xref: ZFA:0005101 +is_a: UBERON:0007304 ! appendage vasculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005102 +name: presumptive median fin fold +namespace: uberon/phenoscape-anatomy +synonym: "presumptive median fin-fold" EXACT [TAO:0005102] +xref: ZFA:0005102 +is_a: UBERON:0006598 ! presumptive structure +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005103 +name: presumptive ventral fin fold +namespace: uberon/phenoscape-anatomy +synonym: "presumptive ventral fin-fold" EXACT [TAO:0005103] +xref: ZFA:0005103 +is_a: UBERON:2005102 ! presumptive median fin fold +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005104 +name: presumptive dorsal fin fold +namespace: uberon/phenoscape-anatomy +synonym: "presumptive dorsal fin-fold" EXACT [TAO:0005104] +xref: ZFA:0005104 +is_a: UBERON:2005102 ! presumptive median fin fold +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005106 +name: longitudinal lateral lymphatic vessel +namespace: uberon/phenoscape-anatomy +synonym: "LLL" EXACT [TAO:0005106] +xref: ZFA:0005106 +is_a: UBERON:0004536 ! lymph vasculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005113 +name: dorsal lateral line neuromast +def: "Neuromast that is part of the dorsal lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] +synonym: "neuromast dorsal" EXACT [TAO:0005113] +xref: TAO:0005113 +xref: ZFA:0005113 +is_a: UBERON:0008904 ! neuromast +intersection_of: UBERON:0008904 ! neuromast +intersection_of: part_of UBERON:0003095 ! dorsal lateral line +relationship: part_of UBERON:0003095 ! dorsal lateral line + +[Term] +id: UBERON:2005114 +name: middle lateral line system +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005114 +is_a: UBERON:0002540 ! lateral line system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005115 +name: primary posterior lateral line primordium +namespace: uberon/phenoscape-anatomy +def: "Primordium that forms the first neuromasts of the posterior lateral line. This primordium travels at 1.5-1.7 somites/hour and deposits neuromast that are polarized along the antero-posterior axis." [ZFIN:curator] +synonym: "primary posterior lateral line primordia" EXACT PLURAL [TAO:0005115] +synonym: "primI" EXACT [TAO:0005115] +xref: ZFA:0005115 +is_a: UBERON:2001157 ! posterior lateral line primordium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005116 +name: secondary posterior lateral line primordium +namespace: uberon/phenoscape-anatomy +def: "Second lateral line primordium. These primordia moves at 0.2 somites/hour and deposite neromasts that are polarized in a dorso-ventral direction." [ZFIN:curator] +synonym: "secondary posterior lateral line primordia" EXACT PLURAL [TAO:0005116] +xref: ZFA:0005116 +is_a: UBERON:2001157 ! posterior lateral line primordium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005117 +name: anterior lateral line primordium +namespace: uberon/phenoscape-anatomy +def: "A migrating group of cells originating from an anterior lateral line placode. The primordium deposits neuromasts and interneuromasts between them during its migration." [ZFIN:curator] +synonym: "anterior lateral line primordia" EXACT PLURAL [TAO:0005117] +xref: ZFA:0005117 +is_a: UBERON:2000228 ! lateral line primordium +relationship: part_of UBERON:2001468 ! anterior lateral line system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005118 +name: middle lateral line primordium +namespace: uberon/phenoscape-anatomy +def: "A migrating group of cells originating from the middle lateral line placode. The primordium deposits neuromasts with interneuromasts between them." [ZFIN:curator] +synonym: "middle lateral line primordia" EXACT PLURAL [TAO:0005118] +xref: ZFA:0005118 +is_a: UBERON:2000228 ! lateral line primordium +relationship: part_of UBERON:2005114 ! middle lateral line system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005119 +name: barbel primordium +namespace: uberon/phenoscape-anatomy +def: "A surface structure that will eventually grow to form a barbel. The primordium is rich in taste buds. The final location for taste buds present in the primordium is the distal tip of the mature barbel." [ZFIN:curator] +synonym: "barbel primordia" EXACT PLURAL [TAO:0005119] +xref: ZFA:0005119 +is_a: UBERON:0003102 ! surface structure +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005121 +name: middle lateral line placode +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005121 +is_a: UBERON:0003067 ! dorsolateral placode +relationship: part_of UBERON:2005114 ! middle lateral line system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005122 +name: dorsal axial hypoblast +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005122 +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:2001378 ! axial hypoblast +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005126 +name: intestinal bulb epithelium +namespace: uberon/phenoscape-anatomy +def: "Intestinal epithelium which lines the lumen of the intestinal bulb." [ZFIN:curator] +xref: ZFA:0005126 +is_a: UBERON:0001277 ! intestinal epithelium +relationship: part_of UBERON:2001076 ! intestinal bulb +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005135 +name: primary dental epithelium +namespace: uberon/phenoscape-anatomy +def: "Epithelium that surrounds a primary tooth. This epithelium is committed to formation of replacement teeth." [ZFIN:curator] +synonym: "pharyngeal tooth epithelium" EXACT [TAO:0005135] +synonym: "primary tooth epithelium" EXACT [TAO:0005135] +xref: ZFA:0005135 +is_a: UBERON:0003843 ! dental epithelium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005142 +name: obsolete enameloid +namespace: uberon/phenoscape-anatomy +def: "Skeletal tissue that is hypermineralized and aprismatic and deposited by a combination of ameloblasts and odontoblasts that are excluded from the matrix. Enameloid develops from pre-enameloid tissue." [VSAO:curator] +is_obsolete: true +replaced_by: UBERON:0011692 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005144 +name: ampullary nerve +namespace: uberon/phenoscape-anatomy +def: "A branch of the 8th cranial nerve that innervates the cristae ampullaris." [ZFIN:curator] +xref: ZFA:0005144 +is_a: UBERON:0011779 ! nerve of head region +relationship: part_of UBERON:0001648 ! vestibulocochlear nerve +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005149 +name: distal epidermal cap of regenerating fin/limb +def: "Part of regeneration epithelium at the tip of the fin/limb [ZFA,modified]." [ZFIN:curator] +xref: TAO:0005149 +xref: ZFA:0005149 +is_a: UBERON:0007567 ! regenerating anatomical structure +relationship: part_of UBERON:2001389 ! regeneration epithelium of fin/limb + +[Term] +id: UBERON:2005150 +name: basal regeneration epithelium of regenerating fin/limb +def: "Layer of the wound epidermis that surrounds the blastema in the fin or limb[ZFA,modified]." [ZFIN:curator] +synonym: "basal wound epidermis" EXACT [TAO:0005150] +xref: TAO:0005150 +xref: ZFA:0005150 +is_a: UBERON:0007567 ! regenerating anatomical structure +relationship: part_of UBERON:2001389 ! regeneration epithelium of fin/limb + +[Term] +id: UBERON:2005151 +name: obsolete gold iridophore +namespace: uberon/phenoscape-anatomy +def: "Iridescent iridophore containing gold reflecting platelets." [ZFIN:curator] +xref: ZFA:0005151 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005152 +name: obsolete silver iridophore +namespace: uberon/phenoscape-anatomy +def: "Iridescent iridophore containing silver reflecting platelets." [ZFIN:curator] +xref: ZFA:0005152 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005170 +name: extrahepatic duct +namespace: uberon/phenoscape-anatomy +def: "Bile duct that collects from the intrahepatic ducts and feeds into the common bile duct." [ZFIN:curator] +xref: ZFA:0005170 +is_a: UBERON:0002394 ! bile duct +relationship: part_of UBERON:0005171 ! hepatic duct +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005174 +name: ventral liver lobe +namespace: uberon/phenoscape-anatomy +def: "Portion of the liver which develops on the fish's ventral side." [ZFIN:curator] +synonym: "3rd lobe" EXACT [TAO:0005174] +synonym: "third lobe" EXACT [TAO:0005174] +xref: ZFA:0005174 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: part_of UBERON:0002107 ! liver +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005175 +name: obsolete CoPA +namespace: uberon/phenoscape-anatomy +def: "An interneuron in the spinal cord. CoPA are bipolar with 'T' shaped dorsal dendrites, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord." [ZFIN:ZDB-PUB-010807-17, ZFIN:ZDB-PUB-961014-274, ZFIN:ZDB-PUB-961014-649] +comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. incorrectly generalized to teleosts +synonym: "primary commissural interneuron" EXACT [TAO:0005175] +xref: ZFA:0005175 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005176 +name: obsolete CoSA +namespace: uberon/phenoscape-anatomy +def: "An interneuron of the spinal cord. CoSA, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord." [ZFIN:ZDB-PUB-010807-17, ZFIN:ZDB-PUB-961014-649] +comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. obsoleting because incorrectly generalized to teleosts. +synonym: "secondary commissural interneuron" EXACT [TAO:0005176] +xref: ZFA:0005176 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005177 +name: obsoelte VeLD +namespace: uberon/phenoscape-anatomy +comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. incorrectly generalized to teleosts so being obsoleted. +synonym: "V2b interneuron" RELATED [TAO:0005177] +synonym: "ventral longitudinal interneuron" EXACT [TAO:0005177] +xref: ZFA:0005177 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005178 +name: obsolete DoLA +namespace: uberon/phenoscape-anatomy +comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. incorrectly generalized to teleosts so being obsoleted. +synonym: "dorsal longitudinal interneuron" EXACT [TAO:0005178] +xref: ZFA:0005178 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005179 +name: obsolete MiP motor neuron +namespace: uberon/phenoscape-anatomy +comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. +synonym: "middle primary motoneuron" EXACT [TAO:0005179] +xref: ZFA:0005179 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005180 +name: obsolete RoP motor neuron +namespace: uberon/phenoscape-anatomy +comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. +synonym: "rostral primary motoneuron" EXACT [TAO:0005180] +xref: ZFA:0005180 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005181 +name: obsolete VaP motor neuron +namespace: uberon/phenoscape-anatomy +comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. +synonym: "variable primary motoneuron" EXACT [TAO:0005181] +xref: ZFA:0005181 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005182 +name: obsolete t-interneuron +namespace: uberon/phenoscape-anatomy +comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. +xref: ZFA:0005182 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005183 +name: obsolete MiD2i +namespace: uberon/phenoscape-anatomy +comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL +synonym: "middle dorsal 2 ipsilateral interneuron" EXACT [TAO:0005183] +xref: ZFA:0005183 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005184 +name: obsolete MiD2cl +namespace: uberon/phenoscape-anatomy +comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL +synonym: "middle dorsal 2 contralateral llf interneuron" EXACT [TAO:0005184] +xref: ZFA:0005184 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005185 +name: obsolete MiD2cm +namespace: uberon/phenoscape-anatomy +comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL +synonym: "middle dorsal 2 contralateral mlf interneuron" EXACT [TAO:0005185] +xref: ZFA:0005185 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005186 +name: obsolete CoB +namespace: uberon/phenoscape-anatomy +def: "A bifurcate interneuron. It is a commissural neuron with both ascending and descending axons in the ventrolateral cord contralateral to its cell body." [ZFIN:ZDB-PUB-961014-649] +comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL.\n\nThis may be the same as CoBL. incorrectly generalized to teleosts so being obsoleted. +synonym: "bifurcate commissural interneuron" EXACT [TAO:0005186] +xref: ZFA:0005186 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005187 +name: obsolete MiM1 +namespace: uberon/phenoscape-anatomy +synonym: "middle medial interneuron" EXACT [TAO:0005187] +xref: ZFA:0005187 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005188 +name: obsolete MiR1 +namespace: uberon/phenoscape-anatomy +synonym: "middle rostral 1 interneuron" EXACT [TAO:0005188] +xref: ZFA:0005188 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005189 +name: obsolete MiR2 +namespace: uberon/phenoscape-anatomy +synonym: "middle rostral 2 interneuron" EXACT [TAO:0005189] +xref: ZFA:0005189 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005190 +name: obsolete MiV1 +namespace: uberon/phenoscape-anatomy +synonym: "middle ventral 1 neuron" EXACT [TAO:0005190] +xref: ZFA:0005190 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005191 +name: obsolete MiV2 +namespace: uberon/phenoscape-anatomy +synonym: "middle ventral 2 neuron" EXACT [TAO:0005191] +xref: ZFA:0005191 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005192 +name: obsolete RoI2C +namespace: uberon/phenoscape-anatomy +synonym: "rostral intermediate 2 caudal interneuron" EXACT [TAO:0005192] +xref: ZFA:0005192 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005193 +name: obsolete RoI2R +namespace: uberon/phenoscape-anatomy +synonym: "rostral intermediate 2 rostral interneuron" EXACT [TAO:0005193] +xref: ZFA:0005193 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005194 +name: obsolete RoL1 +namespace: uberon/phenoscape-anatomy +comment: May have 12 neurons in each hemi rhombomere ZDB-PUB-060217-9\n7 neurons in each hemi rhombomere 080227-17 and 931014-770 +synonym: "rostral lateral 1 interneuron" EXACT [TAO:0005194] +xref: ZFA:0005194 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005195 +name: obsolete MiD3cl +namespace: uberon/phenoscape-anatomy +comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. +synonym: "middle dorsal 3 contralateral llf interneuron" EXACT [TAO:0005195] +xref: ZFA:0005195 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005196 +name: obsolete MiD3cm +namespace: uberon/phenoscape-anatomy +comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. +synonym: "middle dorsal 3 contralateral mlf interneuron" EXACT [TAO:0005196] +xref: ZFA:0005196 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005197 +name: obsolete MiD3i +namespace: uberon/phenoscape-anatomy +comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. +synonym: "middle dorsal 3 ipsilateral interneuron" EXACT [TAO:0005197] +xref: ZFA:0005197 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005198 +name: obsolete RoL2 +namespace: uberon/phenoscape-anatomy +synonym: "rostral lateral 2 interneuron" EXACT [TAO:0005198] +xref: ZFA:0005198 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005199 +name: obsolete RoL2r +namespace: uberon/phenoscape-anatomy +synonym: "rostral lateral 2 rostral interneuron" EXACT [TAO:0005199] +xref: ZFA:0005199 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005200 +name: obsolete RoL2c +namespace: uberon/phenoscape-anatomy +synonym: "rostral lateral 2 caudal interneuron" EXACT [TAO:0005200] +xref: ZFA:0005200 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005201 +name: obsolete obsolete RoL3 +namespace: uberon/phenoscape-anatomy +synonym: "rostral lateral 3 interneuron" EXACT [TAO:0005201] +xref: ZFA:0005201 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005202 +name: obsolete RoM1c +namespace: uberon/phenoscape-anatomy +synonym: "rostral medial 1 caudal interneuron" EXACT [TAO:0005202] +xref: ZFA:0005202 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005203 +name: obsolete RoM1r +namespace: uberon/phenoscape-anatomy +synonym: "rostral medial 1 rostral interneuron" EXACT [TAO:0005203] +xref: ZFA:0005203 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005204 +name: obsolete rostral ventral 3 interneuron +namespace: uberon/phenoscape-anatomy +synonym: "RoV3" EXACT [TAO:0005204] +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005205 +name: obsolete RoM2l +namespace: uberon/phenoscape-anatomy +synonym: "rostral medial 2 lateral interneuron" EXACT [TAO:0005205] +xref: ZFA:0005205 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005206 +name: obsolete RoM2m +namespace: uberon/phenoscape-anatomy +synonym: "rostral medial 2 medial interneuron" EXACT [TAO:0005206] +xref: ZFA:0005206 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005207 +name: obsolete RoM3l +namespace: uberon/phenoscape-anatomy +synonym: "rostral medial 3 lateral interneuron " EXACT [TAO:0005207] +xref: ZFA:0005207 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005208 +name: obsolete RoM3m +namespace: uberon/phenoscape-anatomy +synonym: "rostral medial 3 medial interneuron " RELATED [TAO:0005208] +xref: ZFA:0005208 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005209 +name: obsolete hindbrain interneuron +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005209 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005210 +name: obsolete midbrain interneuron +namespace: uberon/phenoscape-anatomy +def: "CNS interneurons located in the midbrain." [ZFIN:Curator] +xref: ZFA:0005210 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005211 +name: obsolete MeL +namespace: uberon/phenoscape-anatomy +synonym: "mesencephalon lateral interneuron" EXACT [TAO:0005211] +xref: ZFA:0005211 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005212 +name: obsolete MeM +namespace: uberon/phenoscape-anatomy +synonym: "mesencephalon medial interneuron" EXACT [TAO:0005212] +xref: ZFA:0005212 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005213 +name: obsolete MeLr +namespace: uberon/phenoscape-anatomy +synonym: "mesencephalon lateral rostral interneuron" EXACT [TAO:0005213] +xref: ZFA:0005213 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005214 +name: obsolete MeLc +namespace: uberon/phenoscape-anatomy +synonym: "mesencephalon lateral caudal interneuron" EXACT [TAO:0005214] +xref: ZFA:0005214 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005215 +name: obsolete MeLm +namespace: uberon/phenoscape-anatomy +synonym: "mesencephalon lateral medial interneuron" EXACT [TAO:0005215] +xref: ZFA:0005215 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005216 +name: obsolete MeM1 +namespace: uberon/phenoscape-anatomy +synonym: "mesencephalon medial 1 interneuron" EXACT [TAO:0005216] +xref: ZFA:0005216 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005217 +name: obsolete CaV +namespace: uberon/phenoscape-anatomy +def: "Hindbrain interneuron that is part of rhombomere 7, with 2 ventral neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] +synonym: "caudal ventral interneuron" EXACT [TAO:0005217] +xref: ZFA:0005217 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005218 +name: obsolete CaD +namespace: uberon/phenoscape-anatomy +synonym: "caudal dorsal interneuron" EXACT [TAO:0005218] +xref: ZFA:0005218 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005219 +name: choroid plexus vascular circuit +namespace: uberon/phenoscape-anatomy +def: "Cranial vasculature where the posterior cerebral veins and the trans-choroid plexus branch form a circuit around the 4th ventricle choroid plexus." [ZFIN:ZDB-PUB-080908-11] +synonym: "choroid vascular circuit" RELATED [TAO:0005219] +synonym: "CVC" EXACT [TAO:0005219] +xref: ZFA:0005219 +is_a: UBERON:0008998 ! vasculature of brain +relationship: part_of UBERON:0001886 ! choroid plexus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005220 +name: larval melanophore stripe +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005220 +is_a: UBERON:2001463 ! melanophore stripe +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005221 +name: dorsal larval melanophore stripe +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005221 +is_a: UBERON:2005220 ! larval melanophore stripe +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005222 +name: ventral larval melanophore stripe +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005222 +is_a: UBERON:2005220 ! larval melanophore stripe +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005223 +name: lateral larval melanophore stripe +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005223 +is_a: UBERON:2005220 ! larval melanophore stripe +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005224 +name: yolk larval melanophore stripe +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005224 +is_a: UBERON:2005220 ! larval melanophore stripe +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005225 +name: median fin radial bone +namespace: uberon/phenoscape-anatomy +def: "median fin radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +synonym: "actinophore" EXACT [PSPUB:0000173] +synonym: "actinoste" EXACT [PSPUB:0000163] +synonym: "axonoste" EXACT [PSPUB:0000141] +synonym: "ptrygiophore" EXACT [PSPUB:0000164] +is_a: UBERON:2000271 ! radial bone +is_a: UBERON:2105225 ! median fin radial element +intersection_of: UBERON:2105225 ! median fin radial element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2205225 ! median fin radial cartilage + +[Term] +id: UBERON:2005226 +name: median fin proximal radial bone +namespace: uberon/phenoscape-anatomy +def: "median fin proximal radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +synonym: "basoste" EXACT [PSPUB:0000138] +synonym: "ptrygiophore proximal" EXACT [PSPUB:0000164] +is_a: UBERON:2005225 ! median fin radial bone +is_a: UBERON:2105226 ! median fin proximal radial element +intersection_of: UBERON:2105226 ! median fin proximal radial element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2205226 ! median fin proximal radial cartilage + +[Term] +id: UBERON:2005227 +name: protoneuromast +namespace: uberon/phenoscape-anatomy +synonym: "immature neuromast" RELATED [TAO:0005227] +synonym: "proto neuromast" RELATED [TAO:0005227] +synonym: "proto-neuromast" RELATED [TAO:0005227] +xref: ZFA:0005227 +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0002540 ! lateral line system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005228 +name: obsolete segmented lepidotrichium +namespace: uberon/phenoscape-anatomy +synonym: "segmented ray" EXACT [TAO:0005228] +synonym: "soft ray" EXACT [] +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005230 +name: obsolete CoBL +namespace: uberon/phenoscape-anatomy +def: "A bifurcate interneuron where the axon projects ventrally, crossing the spinal cord ventral to the Mauthner axons before bifurcating and extending dorsally." [ZFIN:ZDB-PUB-010807-17] +comment: incorrectly generalized to teleosts so being obsoleted. +synonym: "commissural bifurcating longitudinal" EXACT [TAO:0005230] +xref: ZFA:0005230 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005231 +name: obsolete bifurcate interneuron +namespace: uberon/phenoscape-anatomy +comment: Not in scope of uberon +xref: ZFA:0005231 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005232 +name: obsolete MCoD +namespace: uberon/phenoscape-anatomy +comment: incorrectly generalized to teleosts so being obsoleted. +synonym: "multipolar commissural descending interneuron" EXACT [TAO:0005232] +xref: ZFA:0005232 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005233 +name: obsolete CiD +namespace: uberon/phenoscape-anatomy +def: "A interneuron of the spinal cord with an ipsilateral axon that extends ventral to the Mauthner axon then turns dorsally and caudally and sometimes has a minor ascending branch." [ZFIN:ZDB-PUB-010807-17] +comment: incorrectly generalized to teleosts +synonym: "circumferential descending interneuron" EXACT [TAO:0005233] +synonym: "V2a interneuron" RELATED [TAO:0005233] +xref: ZFA:0005233 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005234 +name: obsolete CoLA +namespace: uberon/phenoscape-anatomy +def: "A spinal interneuron with a dorsal dendrite that extends caudally. CoLA also has midlateral process that extend rostrally and caudally, the axon crosses the cord dorsal to the Mauthner cell and ascends, extending dorsally. Axon has minor descending branch." [ZFIN:ZDB-PUB-010807-17] +comment: incorrectly generalized to teleosts +synonym: "commissural longitudinal ascending interneuron" EXACT [TAO:0005234] +xref: ZFA:0005234 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005235 +name: obsoelte UCoD +namespace: uberon/phenoscape-anatomy +comment: incorrectly generalized to teleosts so being obsoleted. +synonym: "unipolar commissural descending interneuron" RELATED [TAO:0005235] +xref: ZFA:0005235 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005239 +name: obsolete micropylar cell +namespace: uberon/phenoscape-anatomy +comment: replaced by CL_0007022 once cl is released. +synonym: "plug cell" EXACT [TAO:0005239] +xref: ZFA:0005239 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005240 +name: obsolete Kolmer-Agduhr neuron +namespace: uberon/phenoscape-anatomy +def: "Kolmer-Agduhr neurons are ciliated GABAergic neurons that contact the central canal of the spinal cord and have ipsilateral ascending axons." [ZFIN:ZDB-PUB-080825-21] +synonym: "KA cell" EXACT [TAO:0005240] +synonym: "Kolmer-Agduhr cell" EXACT [TAO:0005240] +xref: ZFA:0005240 +is_obsolete: true +replaced_by: CL:0005007 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005241 +name: obsolete polychromatophilic erythroblast +namespace: uberon/phenoscape-anatomy +synonym: "intermediate erythroblast" EXACT [TAO:0005241] +synonym: "intermediate normoblast" RELATED [TAO:0005241] +synonym: "polychromatic erythroblast" EXACT [TAO:0005241] +synonym: "polychromatic normoblast" EXACT [TAO:0005241] +synonym: "polychromatophilic normoblast" RELATED [TAO:0005241] +synonym: "rubricyte" EXACT [TAO:0005241] +xref: ZFA:0005241 +is_obsolete: true +replaced_by: CL:0000550 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005244 +name: obsolete auditory epithelial support cell +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005244 +is_obsolete: true +replaced_by: CL:0005014 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005245 +name: inter-parietal joint +namespace: uberon/phenoscape-anatomy +def: "Fibrous joint connecting the parietal bones." [ZFA:ZDB-PUB-060323-12] +synonym: "sagittal suture" RELATED [TAO:0005245] +xref: ZFA:0005607 +is_a: UBERON:0002209 ! fibrous joint +created_by: wasila.dahdul +creation_date: 2012-02-10T04:18:40Z + +[Term] +id: UBERON:2005246 +name: obsolete regeneration fibroblast +namespace: uberon/phenoscape-anatomy +def: "Is a fibroblast that differentiates from the de-differentiated cells of the blastema." [ZFIN:curator] +synonym: "blastemal fibroblast" EXACT [TAO:0005246] +synonym: "blastemal fibroblasts" EXACT PLURAL [TAO:0005246] +xref: ZFA:0005246 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005247 +name: obsolete CiA +namespace: uberon/phenoscape-anatomy +def: "Interneurons of the spinal cord that arise from the V1 proliferation domain. The CiA neurons inhibit motoneurons, other ventral interneurons and also inhibit dorsal sensory neurons involved in sensory gating,. CiA have ipsilateral axonal projections in both motor and sensory regions of spinal cord." [ZFIN:ZDB-PUB-040625-12, ZFIN:ZDB-PUB-060418-1] +comment: incorrectly generalized to teleosts/vertebrates. +synonym: "circumferential ascending interneuron" EXACT [TAO:0005247] +xref: ZFA:0005247 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005248 +name: trans-choroid plexus branch +namespace: uberon/phenoscape-anatomy +synonym: "TCB" EXACT [TAO:0005248] +xref: ZFA:0005248 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003499 ! brain blood vessel +relationship: develops_from UBERON:2005027 ! posterior cerebral vein +relationship: part_of UBERON:2005219 ! choroid plexus vascular circuit +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005255 +name: obsolete frontal-parietal joint +namespace: uberon/phenoscape-anatomy +is_obsolete: true +consider: UBERON:0016631 +consider: ZFA:0005608 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005256 +name: intervillus pockets +namespace: uberon/phenoscape-anatomy +def: "A portion of tissue formed between the base of the intestinal villi that is part of the intestinal epithelium where intestinal stem cells are located. In the intestine no crypts are present, but, the regions between the villi, the intervillus pockets, have a crypt-like function. Cells are produced in the intervillus pockets and shed from the villus tips." [ZFIN:ZDB-PUB-050209-3] +xref: ZFA:0005256 +is_a: UBERON:0000479 ! tissue +relationship: part_of UBERON:0001277 ! intestinal epithelium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005259 +name: continuous capillary +def: "Capillary that has endothelial cells that provide an uninterrupted lining, and only allow small molecules, like water and ions to diffuse through tight junctions which leave gaps of unjoined membrane which are called intercellular clefts." [http://en.wikipedia.org/wiki/Capillary#Types] +synonym: "continuous blood vessel endothelium" BROAD [] +synonym: "continuous blood vessel endothelium" EXACT [ZFA:0005259] +synonym: "continuous capillary vessel" EXACT [FMA:63195] +synonym: "continuous endothelium" BROAD [] +xref: FMA:63195 +xref: http://linkedlifedata.com/resource/umls/id/C1179614 +xref: NCIT:C32370 +xref: TAO:0005259 +xref: Types +xref: UMLS:C1179614 {source="ncithesaurus:Continuous_Capillary"} +xref: ZFA:0005259 +is_a: UBERON:0001982 {source="FMA"} ! capillary +is_a: UBERON:0004638 {source="ZFA"} ! blood vessel endothelium + +[Term] +id: UBERON:2005260 +name: fenestrated capillary +def: "Capillary that has pores in the endothelial cells (60-80 nm in diameter) that are spanned by a diaphragm of radially oriented fibrils and allow small molecules and limited amounts of protein to diffuse" [http://en.wikipedia.org/wiki/Capillary#Types, http://en.wikipedia.org/wiki/Fenestra_(histology)] +synonym: "fenestrated blood vessel endothelium" BROAD [ZFA:0005260] +synonym: "fenestrated capillary vessel" EXACT [FMA:63196] +xref: FMA:63196 +xref: http://linkedlifedata.com/resource/umls/id/C1179615 +xref: NCIT:C32595 +xref: TAO:0005260 +xref: Types +xref: UMLS:C1179615 {source="ncithesaurus:Fenestrated_Capillary"} +xref: ZFA:0005260 +is_a: UBERON:0001982 {source="FMA"} ! capillary +is_a: UBERON:0004638 {source="ZFA"} ! blood vessel endothelium + +[Term] +id: UBERON:2005264 +name: supraoccipital-parietal joint +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005609 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0004747 ! supraoccipital bone +intersection_of: connects UBERON:0004865 ! actinopterygian parietal bone +relationship: connects UBERON:0004747 ! supraoccipital bone +relationship: connects UBERON:0004865 ! actinopterygian parietal bone +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005265 +name: hyomandibula-opercle joint +namespace: uberon/phenoscape-anatomy +def: "Synovial joint that articulates the hyomandibula and the opercle." [ZFIN:CVS] +xref: ZFA:0005626 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0011606 ! hyomandibular bone +intersection_of: connects UBERON:2000250 ! opercle +relationship: connects UBERON:0011606 ! hyomandibular bone +relationship: connects UBERON:2000250 ! opercle +created_by: haendel +creation_date: 2012-04-09T06:34:33Z + +[Term] +id: UBERON:2005266 +name: pterotic fossa +namespace: uberon/phenoscape-anatomy +def: "Fossa on the pterotic where the hyomandibula articulates." [ZFIN:ZDB-PUB-961014-192] +xref: ZFA:0005630 +is_a: UBERON:0004704 ! bone fossa +created_by: haendel +creation_date: 2012-04-09T06:50:18Z + +[Term] +id: UBERON:2005267 +name: erector muscle +namespace: uberon/phenoscape-anatomy +def: "Muscle that moves parts of the body in a superior direction to an erect position. Antagonistic to depressor muscle." [ZFIN:curator] +xref: ZFA:0005267 +is_a: UBERON:0001134 ! skeletal muscle tissue +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005268 +name: preopercle horizontal limb-symplectic joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the posterior edge of the preopercle horizontal limb with the symplectic." [ZFIN:curator] +comment: In ZFA, is a type of fibrous joint. May need to stay more general in TAO. +xref: ZFA:0005631 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:2000289 ! preopercle horizontal limb +intersection_of: connects UBERON:2000692 ! symplectic +relationship: connects UBERON:2000289 ! preopercle horizontal limb +relationship: connects UBERON:2000692 ! symplectic +created_by: haendel +creation_date: 2012-04-09T07:25:19Z + +[Term] +id: UBERON:2005269 +name: hypophyseal fenestra +namespace: uberon/phenoscape-anatomy +def: "Space enclosed by the trabeculae cranii. The anterior tip of the notochord extends into the posterior region of the hypophyseal fenestra." [ZFIN:ZDB-PUB-961014-192] +xref: ZFA:0005625 +is_a: UBERON:0005744 ! bone foramen +created_by: haendel +creation_date: 2012-04-09T07:33:26Z + +[Term] +id: UBERON:2005270 +name: depressor muscle +namespace: uberon/phenoscape-anatomy +def: "A muscle that moves body parts into an inferior direction or lowered position. Antagonistic to erector muscle." [ZFIN:curator] +xref: ZFA:0005270 +is_a: UBERON:0001134 ! skeletal muscle tissue +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005272 +name: immature gonad +namespace: uberon/phenoscape-anatomy +def: "Immature reproductive tissue that has not undergone final maturation into either testis or ovary. During gonadal development, the gonad may be transiently intersexual where there is a parallel presence of both oocytes and spermatocytes." [ZFIN:ZDB-PUB-070305-2] +synonym: "juvenile gonad" EXACT [TAO:0005272] +xref: ZFA:0005272 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0005156 ! reproductive structure +relationship: develops_from UBERON:0005564 ! gonad primordium +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005273 +name: intestinal mucosal muscle +namespace: uberon/phenoscape-anatomy +def: "A thin layer of smooth muscle immediately beneath the base of the villi which permits the intestinal mucosa to dynamically move and fold." [ZFIN:ZDB-PUB-090217-11] +synonym: "intestinal lamina muscularis mucosae" RELATED [http:www.vivo.colostate.edu/hbooks/pathphys/digestion/basics/gi_microanatomy.html] +xref: ZFA:0005273 +is_a: UBERON:0004221 ! intestine smooth muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005275 +name: hyomandibular foramen +namespace: uberon/phenoscape-anatomy +def: "Foramen in the hyomandibula that allows passage of the anterior lateral line nerve and the facial nerve (cranial nerve VII)." [ZFIN:ZDB-PUB-961014-192] +xref: ZFA:0005629 +is_a: UBERON:0005744 ! bone foramen +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0011608 ! hyomandibular element +created_by: haendel +creation_date: 2012-04-09T07:39:00Z + +[Term] +id: UBERON:2005276 +name: inclinator muscle +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005276 +is_a: UBERON:0001134 ! skeletal muscle tissue + +[Term] +id: UBERON:2005278 +name: preopercle vertical limb-hyomandibula joint +namespace: uberon/phenoscape-anatomy +def: "Joint that articulates the anterior edge of the preopercle vertical limb and the hyomandibula." [ZFIN:curator] +xref: ZFA:0005632 +is_a: UBERON:0000982 ! skeletal joint +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0011606 ! hyomandibular bone +intersection_of: connects UBERON:2000336 ! preopercle vertical limb +relationship: connects UBERON:0011606 ! hyomandibular bone +relationship: connects UBERON:2000336 ! preopercle vertical limb +created_by: haendel +creation_date: 2012-04-09T07:41:34Z + +[Term] +id: UBERON:2005279 +name: enteric circular muscle +namespace: uberon/phenoscape-anatomy +def: "Smooth muscle of the enteric muscle system in which the cells are aligned perpendicular to the lumen of the gut." [ZFIN:curator] +xref: ZFA:0005279 +is_a: UBERON:0001135 ! smooth muscle tissue +relationship: part_of UBERON:2001324 ! enteric musculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005292 +name: distal late tubule +namespace: uberon/phenoscape-anatomy +def: "Portion of the renal tubule which is just posterior to the distal early tubule." [ZFIN:curator] +xref: ZFA:0005292 +is_a: UBERON:0006553 ! renal duct +relationship: part_of UBERON:0001231 ! nephron tubule +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005295 +name: axial blood vessel +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005295 +is_a: UBERON:2001073 ! axial vasculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005303 +name: caudal fin lymph vessel +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005303 +is_a: UBERON:0007384 ! appendage lymph vessel +relationship: part_of UBERON:2005097 ! caudal fin vasculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005304 +name: caudal fin blood vessel +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005304 +is_a: UBERON:0007301 ! appendage blood vessel +relationship: part_of UBERON:2005097 ! caudal fin vasculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005311 +name: pronephric glomerular capsule epithelium +namespace: uberon/phenoscape-anatomy +def: "Simple squamous epithelium that lines the capsule of the pronephric glomerulus." [ZFIN:curator] +synonym: "pronephric parietal epithelial layer" EXACT [TAO:0005311] +xref: ZFA:0005311 +is_a: UBERON:0000487 ! simple squamous epithelium +is_a: UBERON:0004211 ! nephron epithelium +relationship: part_of UBERON:0001230 ! glomerular capsule +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005316 +name: fin fold pectoral fin bud +namespace: uberon/phenoscape-anatomy +def: "Fin fold of the pectoral fin bud, resulting from mesenchyme migration into the apical fold." [ZFIN:ZDB-PUB-001101-7, ZFIN:ZDB-PUB-990210-18] +synonym: "fin membrane pectoral fin bud" RELATED [TAO:0005316] +synonym: "fin-fold pectoral fin bud" EXACT [TAO:0005316] +xref: ZFA:0005316 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: develops_from UBERON:0005421 ! pectoral appendage apical ectodermal ridge +relationship: part_of UBERON:0005419 ! pectoral appendage bud +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005317 +name: pectoral fin fold +namespace: uberon/phenoscape-anatomy +def: "The functional webs of the paired fins. They arise as a consequence of apical fold (AER) expansion and of migration of the distal mesenchyme. The fin folds are delimited by a dorsal and a ventral striated epidermis. The cells of the epidermal basal stratum are positioned on a basement membrane. Directly beneath the basement membrane of each side there is an array of actinotrichs, fibers of the extracellular matrix which act as supportive elements of the larval fin folds." [ZFIN:ZDB-PUB-990210-18] +synonym: "pectoral fin-fold" EXACT [TAO:0005317] +xref: ZFA:0005317 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: develops_from UBERON:2005316 ! fin fold pectoral fin bud +relationship: part_of UBERON:0000151 ! pectoral fin +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005319 +name: intersegmental lymph vessel +namespace: uberon/phenoscape-anatomy +synonym: "islv" EXACT [TAO:0005319] +xref: ZFA:0005319 +is_a: UBERON:0004536 ! lymph vasculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005320 +name: dorsal longitudinal lymphatic vessel +namespace: uberon/phenoscape-anatomy +synonym: "dllv" EXACT [TAO:0005320] +xref: ZFA:0005320 +is_a: UBERON:0004536 ! lymph vasculature +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005324 +name: obsolete gill ionocyte +namespace: uberon/phenoscape-anatomy +def: "Ionocyte located in the gills" [ZFIN:curator] +xref: ZFA:0005324 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005325 +name: obsolete integument ionocyte +namespace: uberon/phenoscape-anatomy +def: "Ionocyte located in the integument during embryonic and larval stages." [ZFIN:curator] +synonym: "extrabranchial ionocyte" RELATED [TAO:0005325] +synonym: "skin ionocyte" EXACT [TAO:0005325] +xref: ZFA:0005325 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005326 +name: obsolete NaK ionocyte +namespace: uberon/phenoscape-anatomy +def: "Integument ionocyte rich in Na,K-ATPase." [ZFIN:curator] +synonym: "NaK-MRC" RELATED [TAO:0005326] +synonym: "NaR cell" RELATED [TAO:0005326] +xref: ZFA:0005326 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005327 +name: obsolete vH ionocyte +namespace: uberon/phenoscape-anatomy +def: "Integument ionocyte rich in vacuolar-type H+ ATPase and carbonic anhydrase" [ZFIN:curator] +synonym: "HR cell" RELATED [TAO:0005327] +synonym: "VH-MRC" RELATED [TAO:0005327] +xref: ZFA:0005327 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005336 +name: obsolete presumptive swim bladder +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005336 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005338 +name: posterior recess +namespace: uberon/phenoscape-anatomy +def: "Posterior protrusion of the third ventricle." [ZFIN:curator] +synonym: "posterior recess of diencephalic ventricle" EXACT [TAO:0005338] +xref: ZFA:0005338 +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0002286 ! third ventricle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005339 +name: nucleus of the lateral recess +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005339 +is_a: UBERON:0006568 ! hypothalamic nucleus +relationship: part_of UBERON:2000324 ! caudal periventricular hypothalamus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005340 +name: nucleus of the posterior recess +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005340 +is_a: UBERON:0006568 ! hypothalamic nucleus +relationship: part_of UBERON:2000324 ! caudal periventricular hypothalamus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005341 +name: medial longitudinal catecholaminergic tract +namespace: uberon/phenoscape-anatomy +synonym: "mlct" EXACT [TAO:0005341] +xref: ZFA:0005341 +is_a: UBERON:0002316 ! white matter +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005343 +name: endohypothalamic tract +namespace: uberon/phenoscape-anatomy +def: "CNS white matter, axonal tract interconnecting catecholaminergic cell groups in the posterior tuberculum and hypothalamus." [ZFIN:ZDB-PUB-091221-28] +xref: ZFA:0005343 +is_a: UBERON:0002316 ! white matter +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005344 +name: preopticohypothalamic tract +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005344 +is_a: UBERON:0002316 ! white matter +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005346 +name: extrapancreatic duct +namespace: uberon/phenoscape-anatomy +def: "Portion of the pancreatic duct, external to the pancreas body that connects the pancreas with the hepatopancreatic ampulla." [ZFIN:ZDB-PUB-050623-3] +xref: ZFA:0005346 +is_a: UBERON:0003928 ! digestive system duct +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: part_of UBERON:0007329 ! pancreatic duct +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005365 +name: dorsal fin pterygiophore 2 +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005365 +is_a: UBERON:2001419 ! dorsal fin pterygiophore +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005366 +name: dorsal fin pterygiophore 3 +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005366 +is_a: UBERON:2001419 ! dorsal fin pterygiophore +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005367 +name: dorsal fin pterygiophore 4 +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005367 +is_a: UBERON:2001419 ! dorsal fin pterygiophore +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005368 +name: dorsal fin pterygiophore 5 +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005368 +is_a: UBERON:2001419 ! dorsal fin pterygiophore +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005369 +name: dorsal fin pterygiophore 6 +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005369 +is_a: UBERON:2001419 ! dorsal fin pterygiophore +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005370 +name: dorsal fin pterygiophore 7 +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005370 +is_a: UBERON:2001419 ! dorsal fin pterygiophore +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005371 +name: dorsal fin pterygiophore 8 +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005371 +is_a: UBERON:2001419 ! dorsal fin pterygiophore +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005372 +name: dorsal fin distal radial bone 1 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin distal radial 1 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +xref: ZFA:0005372 +is_a: UBERON:2000936 ! dorsal fin distal radial bone +is_a: UBERON:2105372 ! dorsal fin distal radial element 1 +intersection_of: UBERON:2105372 ! dorsal fin distal radial element 1 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2205372 ! dorsal fin distal radial cartilage 1 + +[Term] +id: UBERON:2005373 +name: dorsal fin distal radial bone 2 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin distal radial 2 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +xref: ZFA:0005373 +is_a: UBERON:2000936 ! dorsal fin distal radial bone +is_a: UBERON:2105373 ! dorsal fin distal radial element 2 +intersection_of: UBERON:2105373 ! dorsal fin distal radial element 2 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2205373 ! dorsal fin distal radial cartilage 2 + +[Term] +id: UBERON:2005374 +name: dorsal fin distal radial bone 3 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin distal radial 3 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +xref: ZFA:0005374 +is_a: UBERON:2000936 ! dorsal fin distal radial bone +is_a: UBERON:2105374 ! dorsal fin distal radial element 3 +intersection_of: UBERON:2105374 ! dorsal fin distal radial element 3 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2205374 ! dorsal fin distal radial cartilage 3 + +[Term] +id: UBERON:2005375 +name: dorsal fin distal radial bone 4 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin distal radial 4 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +xref: ZFA:0005375 +is_a: UBERON:2000936 ! dorsal fin distal radial bone +is_a: UBERON:2105375 ! dorsal fin distal radial element 4 +intersection_of: UBERON:2105375 ! dorsal fin distal radial element 4 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2205375 ! dorsal fin distal radial cartilage 4 + +[Term] +id: UBERON:2005376 +name: dorsal fin distal radial bone 5 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin distal radial 5 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +xref: ZFA:0005376 +is_a: UBERON:2000936 ! dorsal fin distal radial bone +is_a: UBERON:2105376 ! dorsal fin distal radial element 5 +intersection_of: UBERON:2105376 ! dorsal fin distal radial element 5 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2205376 ! dorsal fin distal radial cartilage 5 + +[Term] +id: UBERON:2005377 +name: dorsal fin distal radial bone 6 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin distal radial 6 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +xref: ZFA:0005377 +is_a: UBERON:2000936 ! dorsal fin distal radial bone +is_a: UBERON:2105377 ! dorsal fin distal radial element 6 +intersection_of: UBERON:2105377 ! dorsal fin distal radial element 6 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2205377 ! dorsal fin distal radial cartilage 6 + +[Term] +id: UBERON:2005378 +name: dorsal fin distal radial bone 7 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin distal radial 7 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +xref: ZFA:0005378 +is_a: UBERON:2000936 ! dorsal fin distal radial bone +is_a: UBERON:2105378 ! dorsal fin distal radial element 7 +intersection_of: UBERON:2105378 ! dorsal fin distal radial element 7 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2205378 ! dorsal fin distal radial cartilage 7 + +[Term] +id: UBERON:2005379 +name: dorsal fin distal radial bone 8 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin distal radial 8 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +xref: ZFA:0005379 +is_a: UBERON:2000936 ! dorsal fin distal radial bone +is_a: UBERON:2105379 ! dorsal fin distal radial element 8 +intersection_of: UBERON:2105379 ! dorsal fin distal radial element 8 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2205379 ! dorsal fin distal radial cartilage 8 + +[Term] +id: UBERON:2005380 +name: dorsal fin proximal radial bone 3 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin proximal radial 3 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +xref: ZFA:0005380 +is_a: UBERON:2000947 ! dorsal fin proximal radial bone +is_a: UBERON:2105380 ! dorsal fin proximal radial element 3 +intersection_of: UBERON:2105380 ! dorsal fin proximal radial element 3 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2205380 ! dorsal fin proximal radial cartilage 3 + +[Term] +id: UBERON:2005381 +name: dorsal fin proximal radial bone 4 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin proximal radial 4 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +xref: ZFA:0005381 +is_a: UBERON:2000947 ! dorsal fin proximal radial bone +is_a: UBERON:2105381 ! dorsal fin proximal radial element 4 +intersection_of: UBERON:2105381 ! dorsal fin proximal radial element 4 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2205381 ! dorsal fin proximal radial cartilage 4 + +[Term] +id: UBERON:2005382 +name: dorsal fin proximal radial bone 5 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin proximal radial 5 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +xref: ZFA:0005382 +is_a: UBERON:2000947 ! dorsal fin proximal radial bone +is_a: UBERON:2105382 ! dorsal fin proximal radial element 5 +intersection_of: UBERON:2105382 ! dorsal fin proximal radial element 5 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2205382 ! dorsal fin proximal radial cartilage 5 + +[Term] +id: UBERON:2005383 +name: dorsal fin proximal radial bone 6 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin proximal radial 6 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +xref: ZFA:0005383 +is_a: UBERON:2000947 ! dorsal fin proximal radial bone +is_a: UBERON:2105383 ! dorsal fin proximal radial element 6 +intersection_of: UBERON:2105383 ! dorsal fin proximal radial element 6 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2205383 ! dorsal fin proximal radial cartilage 6 + +[Term] +id: UBERON:2005384 +name: dorsal fin proximal radial bone 7 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin proximal radial 7 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +xref: ZFA:0005384 +is_a: UBERON:2000947 ! dorsal fin proximal radial bone +is_a: UBERON:2105384 ! dorsal fin proximal radial element 7 +intersection_of: UBERON:2105384 ! dorsal fin proximal radial element 7 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2205384 ! dorsal fin proximal radial cartilage 7 + +[Term] +id: UBERON:2005385 +name: dorsal fin proximal radial bone 8 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin proximal radial 8 element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +xref: ZFA:0005385 +is_a: UBERON:2000947 ! dorsal fin proximal radial bone +is_a: UBERON:2105385 ! dorsal fin proximal radial element 8 +intersection_of: UBERON:2105385 ! dorsal fin proximal radial element 8 +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2205385 ! dorsal fin proximal radial cartilage 8 + +[Term] +id: UBERON:2005409 +name: pars superior ear +namespace: uberon/phenoscape-anatomy +def: "The dorsal part of the ear. Comprises the three semicircular canals, which connect to the utricle." [ZFIN:curator] +xref: ZFA:0005409 +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0001846 ! internal ear +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005410 +name: pars inferior ear +namespace: uberon/phenoscape-anatomy +def: "The ventral portion of the ear. It contains the saccule and the laguena which are the primary auditory organs." [ZFIN:curator] +xref: ZFA:0005410 +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0001846 ! internal ear +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005411 +name: common crus +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005411 +is_a: UBERON:0000058 ! duct +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:2005409 ! pars superior ear +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005412 +name: transverse canal +namespace: uberon/phenoscape-anatomy +def: "Duct that crosses the midline connecting the sacculi." [ZFIN:curator] +xref: ZFA:0005412 +is_a: UBERON:0000058 ! duct +relationship: part_of UBERON:0002105 ! vestibulo-auditory system +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005415 +name: inner ear foramen +namespace: uberon/phenoscape-anatomy +def: "Foramen in the inner ear." [ZFIN:curator] +xref: ZFA:0005415 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005744 ! bone foramen +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001846 ! internal ear +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2005416 +name: sacculoagenar foramen +namespace: uberon/phenoscape-anatomy +xref: ZFA:0005416 +is_a: UBERON:2005415 ! inner ear foramen +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007001 +name: dorso-rostral cluster +namespace: uberon/phenoscape-anatomy +def: "Early-forming telencephalic neural cluster. Neurons of the dorso-rostral cluster (drc) extend axons to form the supra-optic tract (SOT) and the anterior commissure (AC). Ross et al., 1992." [ZFIN:curator] +synonym: "dorsorostral cluster" EXACT [TAO:0007001] +synonym: "drc" EXACT [TAO:0007001] +xref: ZFA:0007001 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001893 ! telencephalon +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007002 +name: ventro-rostral cluster +namespace: uberon/phenoscape-anatomy +def: "Early-forming neural cluster located in the rostral diencephalon. At 19 h, axons arising from the vrc grow caudally to pioneer the tract of the postoptic commissure (TPOC). Ross et al., 1992." [ZFIN:curator] +synonym: "ventrorostral cluster" EXACT [TAO:0007002] +synonym: "vrc" EXACT [TAO:0007002] +xref: ZFA:0007002 +is_a: UBERON:0006569 ! diencephalic nucleus +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007003 +name: ventro-caudal cluster +namespace: uberon/phenoscape-anatomy +def: "Early-forming neural cluster of the ventral midbrain. At 16 h, axons of the vcc grow caudally to pioneer the medial longitudinal fasciculus (MLF), which is part of the larger ventral longitudinal tract (VLT). Later, neurons from this cluster project axons rostrally into the tract of the post-optic commissure (TPOC). Ross et al., 1992." [ZFIN:curator] +synonym: "vcc" EXACT [TAO:0007003] +synonym: "ventrocaudal cluster" EXACT [TAO:0007003] +xref: ZFA:0007003 +is_a: UBERON:0001891 ! midbrain +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007004 +name: epiphysial cluster +namespace: uberon/phenoscape-anatomy +def: "Early-developing neuronal cluster of the epiphysis. By 24 hpf the pioneer axon of the dorsoventral diencephalic tract (DVDT) has arisen from the ec and grown ventrally. As this axon encounters axons of the TPOC, it makes a near-90 rostral turn and grows rostrally among axons of the TPOC growing in the opposite direction. Ross et al., 1992." [ZFIN:curator] +synonym: "ec" EXACT [TAO:0007004] +xref: ZFA:0007004 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001905 ! pineal body +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007005 +name: hemal prezygapophysis +namespace: uberon/phenoscape-anatomy +alt_id: UBERON:2001380 +def: "Hemal prezygapophyses are paired, anteromedially directed processes arising from the bases of hemal arches, ligamentously joined to the hemal postzygapophyses of the preceding vertebra. Posterior caudal vertebrae close to the caudal fin lack hemal prezygopophyses." [ZFIN:curator] +synonym: "haemal prezygapophysis" EXACT [TAO:0007005] +synonym: "hemal prezygopophysis" EXACT [TAO:0007005] +xref: ZFA:0007005 +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004247 ! bone of dorsum +relationship: part_of UBERON:0006065 ! hemal arch +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007008 +name: ventral intermandibularis anterior +namespace: uberon/phenoscape-anatomy +synonym: "ventral intermandibulari anterior" EXACT PLURAL [TAO:0007008] +xref: ZFA:0007008 +is_a: UBERON:0014892 ! skeletal muscle organ +relationship: develops_from UBERON:0010931 ! intermandibularis +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007010 +name: obsolete eminentia thalami +namespace: uberon/phenoscape-anatomy +def: "Part of the forebrain that is ventral to the ventral thalamus and dorsal to the preoptic area. See page 44 of the Atlas of Early Zebrafish Brain Development." [ZFIN:curator] +xref: ZFA:0007010 +is_obsolete: true +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007011 +name: obsolete vagal root +namespace: uberon/phenoscape-anatomy +def: "Part of cranial nerve X." [ZFIN:curator] +synonym: "rX" EXACT [TAO:0007011] +synonym: "vagus root" EXACT [TAO:0007011] +xref: ZFA:0007011 +is_obsolete: true +replaced_by: UBERON:0011213 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007012 +name: lateral forebrain bundle +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007012 +is_a: UBERON:0002316 ! white matter +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007013 +name: preplacodal ectoderm +namespace: uberon/phenoscape-anatomy +def: "Non neural ectoderm that surrounds the presumptive neural plate and gives rise to neurogenic placodes." [ZFIN:curator] +xref: ZFA:0007013 +is_a: UBERON:0005497 ! non-neural ectoderm +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007014 +name: anterior presumptive neural plate +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007014 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0007284 ! presumptive neural plate +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007015 +name: posterior presumptive neural plate +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007015 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0007284 ! presumptive neural plate +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007023 +name: posterior neural keel +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007023 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: develops_from UBERON:0003057 ! chordal neural plate +relationship: part_of UBERON:0007135 ! neural keel +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007024 +name: anterior neural keel +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007024 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: develops_from UBERON:0003056 ! pre-chordal neural plate +relationship: part_of UBERON:0007135 ! neural keel +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007025 +name: midbrain neural keel +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007025 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: develops_from UBERON:0009611 ! midbrain neural plate +relationship: part_of UBERON:2007024 ! anterior neural keel +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007026 +name: forebrain neural keel +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007026 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: develops_from UBERON:0009610 ! forebrain neural plate +relationship: part_of UBERON:2007024 ! anterior neural keel +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007027 +name: forebrain midbrain boundary neural keel +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007027 +is_a: UBERON:0006800 ! anatomical line +relationship: develops_from UBERON:0009612 ! forebrain midbrain boundary neural plate +relationship: part_of UBERON:2007024 ! anterior neural keel +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007028 +name: spinal cord neural keel +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007028 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:2007023 ! posterior neural keel +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007029 +name: hindbrain neural keel +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007029 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0009614 ! hindbrain neural plate +relationship: part_of UBERON:2007023 ! posterior neural keel +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007030 +name: posterior neural rod +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007030 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: develops_from UBERON:2007023 ! posterior neural keel +relationship: part_of UBERON:0005068 ! neural rod +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007031 +name: anterior neural rod +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007031 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: develops_from UBERON:2007024 ! anterior neural keel +relationship: part_of UBERON:0005068 ! neural rod +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007032 +name: midbrain neural rod +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007032 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: develops_from UBERON:2007025 ! midbrain neural keel +relationship: part_of UBERON:2007031 ! anterior neural rod +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007033 +name: forebrain midbrain boundary neural rod +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007033 +is_a: UBERON:0006800 ! anatomical line +relationship: develops_from UBERON:2007027 ! forebrain midbrain boundary neural keel +relationship: part_of UBERON:2007031 ! anterior neural rod +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007034 +name: forebrain neural rod +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007034 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: develops_from UBERON:2007026 ! forebrain neural keel +relationship: part_of UBERON:2007031 ! anterior neural rod +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007035 +name: spinal cord neural rod +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007035 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:2007030 ! posterior neural rod +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007036 +name: hindbrain neural rod +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007036 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:2007029 ! hindbrain neural keel +relationship: part_of UBERON:2007030 ! posterior neural rod +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007040 +name: forebrain midbrain boundary neural tube +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007040 +is_a: UBERON:0006800 ! anatomical line +relationship: develops_from UBERON:2007033 ! forebrain midbrain boundary neural rod +relationship: part_of UBERON:0003080 ! anterior neural tube +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007041 +name: forebrain neural tube +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007041 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: develops_from UBERON:2007034 ! forebrain neural rod +relationship: part_of UBERON:0003080 ! anterior neural tube +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007042 +name: spinal cord neural tube +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007042 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: part_of UBERON:0003076 ! posterior neural tube +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007043 +name: hindbrain neural tube +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007043 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:2007036 ! hindbrain neural rod +relationship: part_of UBERON:0003076 ! posterior neural tube +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007045 +name: midbrain hindbrain boundary neural keel +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007045 +is_a: UBERON:0006800 ! anatomical line +relationship: develops_from UBERON:0009615 ! midbrain hindbrain boundary neural plate +relationship: part_of UBERON:0007135 ! neural keel +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007046 +name: midbrain hindbrain boundary neural rod +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007046 +is_a: UBERON:0006800 ! anatomical line +relationship: develops_from UBERON:2007045 ! midbrain hindbrain boundary neural keel +relationship: part_of UBERON:0005068 ! neural rod +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007047 +name: midbrain hindbrain boundary neural tube +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007047 +is_a: UBERON:0006800 ! anatomical line +relationship: develops_from UBERON:2007046 ! midbrain hindbrain boundary neural rod +relationship: part_of UBERON:0001049 ! neural tube +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007048 +name: ventral intermandibularis posterior +namespace: uberon/phenoscape-anatomy +synonym: "ventral intermandibulari posterior" EXACT PLURAL [TAO:0007048] +xref: ZFA:0007048 +is_a: UBERON:0014892 ! skeletal muscle organ +relationship: develops_from UBERON:0010931 ! intermandibularis +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007050 +name: constrictor dorsalis +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007050 +is_a: UBERON:0011648 ! jaw muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007051 +name: ventral interhyoideus +namespace: uberon/phenoscape-anatomy +synonym: "ventral interhyoidei" EXACT PLURAL [TAO:0007051] +xref: ZFA:0007051 +is_a: UBERON:0005493 ! hyoid muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007052 +name: hyohyoideus +namespace: uberon/phenoscape-anatomy +def: "Is a hyoid muscle that inserts at the most anterior basibranchial and also at the posterior ends of the ceratohyals and functions in jaw closure." [ZFIN:ZDB-PUB-020703-2] +synonym: "hyohyoidei" EXACT PLURAL [TAO:0007052] +xref: ZFA:0007052 +is_a: UBERON:0005493 ! hyoid muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007053 +name: dorsal adductor hyomandibulae +namespace: uberon/phenoscape-anatomy +def: "Is a hyoid muscle that attaches to the dorsomedial faces of the hyosymplectics." [ZFIN:ZDB-PUB-020703-2] +xref: ZFA:0007053 +is_a: UBERON:0005493 ! hyoid muscle +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007054 +name: pillar of the anterior semicircular canal +namespace: uberon/phenoscape-anatomy +synonym: "anterior hub of the semicircular canal" EXACT [TAO:0007054] +synonym: "anterior pillar" EXACT [TAO:0007054] +synonym: "anterior pillar of the semicircular canal" EXACT [TAO:0007054] +synonym: "horizontal hub" RELATED [TAO:0007054] +xref: ZFA:0007054 +is_a: UBERON:2002223 ! pillar of the semicircular canal +relationship: develops_from UBERON:2000232 ! lateral semicircular canal primordium +relationship: develops_from UBERON:2000469 ! anterior semicircular canal primordium +relationship: part_of UBERON:0001841 ! anterior semicircular canal +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007055 +name: pillar of the lateral semicircular canal +namespace: uberon/phenoscape-anatomy +synonym: "lateral hub of the semicircular canal" EXACT [TAO:0007055] +synonym: "ventral bar" EXACT [TAO:0007055] +synonym: "ventral pillar" EXACT [TAO:0007055] +synonym: "ventral piller of the semicircular canal" EXACT [TAO:0007055] +xref: ZFA:0007055 +is_a: UBERON:2002223 ! pillar of the semicircular canal +relationship: develops_from UBERON:2001716 ! caudal principal ray 4 +relationship: part_of UBERON:0001843 ! lateral semicircular canal +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007059 +name: neurogenic field +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007059 +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: develops_from UBERON:2007013 ! preplacodal ectoderm +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007060 +name: dorsolateral field +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007060 +is_a: UBERON:2007059 ! neurogenic field +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007061 +name: epibranchial field +namespace: uberon/phenoscape-anatomy +xref: ZFA:0007061 +is_a: UBERON:2007059 ! neurogenic field +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007062 +name: olfactory field +namespace: uberon/phenoscape-anatomy +synonym: "olfactory fields" EXACT PLURAL [TAO:0007062] +xref: ZFA:0007062 +is_a: UBERON:2007059 ! neurogenic field +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2007067 +name: obsolete vagal ganglion +namespace: uberon/phenoscape-anatomy +synonym: "gX" EXACT [TAO:0007067] +xref: ZFA:0007067 +is_obsolete: true +replaced_by: UBERON:0005362 +created_by: teleost_anatomy_curators + +[Term] +id: UBERON:2100268 +name: anal fin proximal radial element +namespace: none +def: "Rod-like internal median skeletal support elememts of the anal fin, which articulate with the distal radial elements." [ZFIN:curator] +synonym: "basal radial of anal fin" RELATED [TAO:0000268] +synonym: "proximal anal-fin radial" RELATED [TAO:0000268] +is_a: UBERON:2101671 ! anal fin radial element +relationship: part_of UBERON:2001420 ! anal fin pterygiophore + +[Term] +id: UBERON:2100271 +name: radial element +namespace: none +def: "Radial elements are the internal skeletal supports of the median and paired fins." [TAO:wd] +comment: Radial elements may be cartilaginous or bony; always present at the base of fins; typically support lepidotrichia. +synonym: "actinost" RELATED [TAO:0000271] +synonym: "radials" RELATED PLURAL [TAO:0000271] +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:4440008 ! fin radial skeleton + +[Term] +id: UBERON:2100508 +name: pelvic fin radial element +namespace: none +def: "Pelvic fin radial elements are internal skeletal supports of the pelvic fin." [TAO:wd] +synonym: "pelvic actinost" RELATED [TAO:0000508] +synonym: "pelvic radial" RELATED [TAO:0000508] +is_a: UBERON:1600006 ! paired fin radial element +intersection_of: UBERON:2100271 ! radial element +intersection_of: part_of UBERON:0000152 ! pelvic fin +relationship: part_of UBERON:4440010 ! pelvic fin radial skeleton + +[Term] +id: UBERON:2100623 +name: basipterygium element +namespace: none +def: "Endochondral element that is paired and supports the pelvic fin. The basipterygium has a posteromedial process called the ischiac process (Wietzman 1962)." [TAO:wd] +synonym: "basipterygia" RELATED PLURAL [TAO:0000623] +synonym: "basipterygium" RELATED [] +synonym: "basiptrygium ischiatique" RELATED [PSPUB:0000145] +synonym: "os pelvien" RELATED [PSPUB:0000164] +synonym: "pelvic bone" RELATED [TAO:0000623] +synonym: "pelvic plate" RELATED [] +synonym: "pubic plate" RELATED [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005179 ! pelvic region element +is_a: UBERON:0010363 ! endochondral element +relationship: overlaps UBERON:2001939 ! inter-basipterygium joint +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton + +[Term] +id: UBERON:2100646 +name: anal fin distal radial element +namespace: none +def: "Rod-like internal median skeletal support elements of the anal fin, which articulate with the lepidotrichia distally." [ZFIN:curator] +synonym: "distal anal fin radial" RELATED [TAO:0000646] +is_a: UBERON:2101671 ! anal fin radial element +relationship: part_of UBERON:2001420 ! anal fin pterygiophore + +[Term] +id: UBERON:2100936 +name: dorsal fin distal radial element +namespace: none +def: "Rod-like internal median skeletal support elements of the dorsal fin, which articulate with the lepidotrichia distally." [ZFIN:curator] +is_a: UBERON:2101672 ! dorsal fin radial element +relationship: part_of UBERON:2001419 ! dorsal fin pterygiophore + +[Term] +id: UBERON:2100947 +name: dorsal fin proximal radial element +namespace: none +def: "Rod-like internal median skeletal support elements of the dorsal fin, which articulate with the distal radial elements." [ZFIN:curator] +synonym: "basal radial of dorsal fin" RELATED [TAO:0000947] +is_a: UBERON:2101672 ! dorsal fin radial element +relationship: part_of UBERON:2001419 ! dorsal fin pterygiophore + +[Term] +id: UBERON:2101415 +name: pelvic fin distal radial element 2 +namespace: none +is_a: UBERON:1600008 ! pelvic fin distal radial element + +[Term] +id: UBERON:2101416 +name: pelvic fin distal radial element 3 +namespace: none +is_a: UBERON:1600008 ! pelvic fin distal radial element + +[Term] +id: UBERON:2101417 +name: pelvic fin distal radial element 1 +namespace: none +is_a: UBERON:1600008 ! pelvic fin distal radial element + +[Term] +id: UBERON:2101586 +name: pectoral fin radial element +namespace: none +def: "Pectoral fin radial elements are the internal skeletal supports of the pectoral fin which develop from the pectoral fin endoskeletal disc, supports the pectoral lepidotrichia or fin rays and connects the lepidotrichia with the primary pectoral girdle." [TAO:GA_TG] +comment: There are two paired series of pectoral radial elements, the proximal and the distal ones that may have variable shapes and sizes. +synonym: "pectoral actinost" RELATED [TAO:0001586] +is_a: UBERON:1600006 ! paired fin radial element +intersection_of: UBERON:2100271 ! radial element +intersection_of: part_of UBERON:0000151 ! pectoral fin +relationship: develops_from UBERON:2001456 ! pectoral fin endoskeletal disc +relationship: part_of UBERON:4440009 ! pectoral fin radial skeleton + +[Term] +id: UBERON:2101587 +name: pectoral fin proximal radial element +namespace: none +def: "Pectoral fin radial element which develops from the pectoral fin endoskeletal disc, supports a few pectoral lepidotrichia or fin rays and connects the lepidotrichia and distal radial elements with the primary pectoral girdle (scapula and coracoid)." [TAO:GA_TG] +comment: Two to four flat or slightly rod-like proximal pectoral radial elements, bilaterally, can be found in teleosts. Pectoral proximal radial elements are commonly hour-glass or rectangular shaped. The presence of four pectoral proximal radial elements is interpreted as a synapomorphy of teleosts (Patterson 1977, Arratia 1999). +is_a: UBERON:2101586 ! pectoral fin radial element + +[Term] +id: UBERON:2101588 +name: pectoral fin distal radial element +namespace: none +def: "Pectoral fin radial element that sometimes ossifies, develops from the pectoral fin endoskeletal disc, and is located at the proximal region of a lepidotrichium, between its hemitrichia. Pectoral fin distal radial element is paired." [TAO:GA_TG] +comment: A variable number of pectoral distal radial elements may be present in each pectoral fin. They are commonly small elements, rod-like, round or square shaped. +is_a: UBERON:2101586 ! pectoral fin radial element + +[Term] +id: UBERON:2101613 +name: dorsal fin middle radial element +namespace: none +def: "Dorsal fin radial element that is the rod-like internal median skeletal support element of the dorsal fin located between the dorsal fin proximal radial element and dorsal fin distal radial element." [TAO:wd] +comment: Synonym dorsal fin medial radial from Weitzman, 1962. +synonym: "dorsal fin medial radial" RELATED [TAO:0001613] +is_a: UBERON:2101672 ! dorsal fin radial element +relationship: part_of UBERON:2001419 ! dorsal fin pterygiophore + +[Term] +id: UBERON:2101614 +name: anal fin middle radial element +namespace: none +def: "Anal fin radial element that is the rod-like internal median skeletal support element of the anal fin located between the anal fin proximal radial element and anal fin distal radial element." [TAO:wd] +comment: Synonym anal fin medial radial from Weitzman, 1962. +synonym: "anal fin medial radial" RELATED [TAO:0001614] +synonym: "medial anal-fin radial" RELATED [TAO:0001614] +is_a: UBERON:2101671 ! anal fin radial element +relationship: part_of UBERON:2001420 ! anal fin pterygiophore + +[Term] +id: UBERON:2101671 +name: anal fin radial element +namespace: none +def: "Anal fin radial elements are internal skeletal supports of the anal fin." [TAO:wd] +is_a: UBERON:2105225 ! median fin radial element +intersection_of: UBERON:2100271 ! radial element +intersection_of: part_of UBERON:4000163 ! anal fin +relationship: part_of UBERON:4000166 ! anal fin skeleton + +[Term] +id: UBERON:2101672 +name: dorsal fin radial element +namespace: none +def: "Dorsal fin radial elements are internal skeletal supports of the dorsal fin." [TAO:wd] +is_a: UBERON:0005174 ! dorsal region element +is_a: UBERON:2105225 ! median fin radial element +intersection_of: UBERON:2100271 ! radial element +intersection_of: part_of UBERON:4000168 ! dorsal fin skeleton +relationship: part_of UBERON:4000168 ! dorsal fin skeleton + +[Term] +id: UBERON:2101818 +name: dorsal fin proximal radial element 1 +namespace: none +is_a: UBERON:2100947 ! dorsal fin proximal radial element + +[Term] +id: UBERON:2101819 +name: dorsal fin proximal radial element 2 +namespace: none +is_a: UBERON:2100947 ! dorsal fin proximal radial element + +[Term] +id: UBERON:2102026 +name: pectoral fin proximal radial element 1 +namespace: none +def: "Pectoral fin proximal radial element that is the most anterior or dorsal pectoral fin radial element." [TAO:GA_TG, TAO:wd] +synonym: "first pectoral basal radial" RELATED [TAO:0002026] +synonym: "pectoral actinost 1" RELATED [] +is_a: UBERON:2101587 ! pectoral fin proximal radial element + +[Term] +id: UBERON:2102027 +name: pectoral fin proximal radial element 2 +namespace: none +def: "Pectoral fin proximal radial element that is the second most anterior or dorsal pectoral fin radial element." [TAO:GA_TG, TAO:wd] +synonym: "pectoral actinost 2" RELATED [] +synonym: "second pectoral basal radial" RELATED [TAO:0002027] +is_a: UBERON:2101587 ! pectoral fin proximal radial element + +[Term] +id: UBERON:2102028 +name: pectoral fin proximal radial element 3 +namespace: none +def: "Pectoral fin proximal radial element that is the third most anterior or dorsal pectoral fin radial element." [TAO:GA_TG, TAO:wd] +synonym: "pectoral actinost 3" RELATED [] +synonym: "third pectoral basal radial" RELATED [TAO:0002028] +is_a: UBERON:2101587 ! pectoral fin proximal radial element + +[Term] +id: UBERON:2102029 +name: pectoral fin proximal radial element 4 +namespace: none +def: "Pectoral fin proximal radial element that is the fourth most anterior or dorsal pectoral fin radial element." [TAO:GA_TG, TAO:wd] +synonym: "fourth pectoral basal radial" RELATED [TAO:0002029] +synonym: "pectoral actinost 4" RELATED [] +is_a: UBERON:2101587 ! pectoral fin proximal radial element + +[Term] +id: UBERON:2102277 +name: pectoral fin distal radial element 1 +namespace: none +is_a: UBERON:2101588 ! pectoral fin distal radial element + +[Term] +id: UBERON:2102279 +name: pectoral fin distal radial element 2 +namespace: none +is_a: UBERON:2101588 ! pectoral fin distal radial element + +[Term] +id: UBERON:2102280 +name: pectoral fin distal radial element 3 +namespace: none +is_a: UBERON:2101588 ! pectoral fin distal radial element + +[Term] +id: UBERON:2105225 +name: median fin radial element +namespace: none +def: "Radial element that is part of a median fin." [TAO:curator] +synonym: "actinophore" RELATED [PSPUB:0000173] +synonym: "actinoste" RELATED [PSPUB:0000163] +synonym: "axonoste" RELATED [PSPUB:0000141] +synonym: "ptrygiophore" RELATED [PSPUB:0000164] +is_a: UBERON:2100271 ! radial element +intersection_of: UBERON:2100271 ! radial element +intersection_of: part_of UBERON:4000162 ! median fin +relationship: part_of UBERON:4000162 ! median fin + +[Term] +id: UBERON:2105226 +name: median fin proximal radial element +namespace: none +synonym: "basoste" RELATED [PSPUB:0000138] +synonym: "ptrygiophore proximal" RELATED [PSPUB:0000164] +is_a: UBERON:2105225 ! median fin radial element + +[Term] +id: UBERON:2105372 +name: dorsal fin distal radial element 1 +namespace: none +is_a: UBERON:2100936 ! dorsal fin distal radial element +intersection_of: UBERON:2100936 ! dorsal fin distal radial element +intersection_of: part_of UBERON:2002094 ! dorsal fin pterygiophore 1 +relationship: part_of UBERON:2002094 ! dorsal fin pterygiophore 1 + +[Term] +id: UBERON:2105373 +name: dorsal fin distal radial element 2 +namespace: none +is_a: UBERON:2100936 ! dorsal fin distal radial element +intersection_of: UBERON:2100936 ! dorsal fin distal radial element +intersection_of: part_of UBERON:2005365 ! dorsal fin pterygiophore 2 +relationship: part_of UBERON:2005365 ! dorsal fin pterygiophore 2 + +[Term] +id: UBERON:2105374 +name: dorsal fin distal radial element 3 +namespace: none +is_a: UBERON:2100936 ! dorsal fin distal radial element +intersection_of: UBERON:2100936 ! dorsal fin distal radial element +intersection_of: part_of UBERON:2005366 ! dorsal fin pterygiophore 3 +relationship: part_of UBERON:2005366 ! dorsal fin pterygiophore 3 + +[Term] +id: UBERON:2105375 +name: dorsal fin distal radial element 4 +namespace: none +is_a: UBERON:2100936 ! dorsal fin distal radial element +intersection_of: UBERON:2100936 ! dorsal fin distal radial element +intersection_of: part_of UBERON:2005367 ! dorsal fin pterygiophore 4 +relationship: part_of UBERON:2005367 ! dorsal fin pterygiophore 4 + +[Term] +id: UBERON:2105376 +name: dorsal fin distal radial element 5 +namespace: none +is_a: UBERON:2100936 ! dorsal fin distal radial element +intersection_of: UBERON:2100936 ! dorsal fin distal radial element +intersection_of: part_of UBERON:2005368 ! dorsal fin pterygiophore 5 +relationship: part_of UBERON:2005368 ! dorsal fin pterygiophore 5 + +[Term] +id: UBERON:2105377 +name: dorsal fin distal radial element 6 +namespace: none +is_a: UBERON:2100936 ! dorsal fin distal radial element +intersection_of: UBERON:2100936 ! dorsal fin distal radial element +intersection_of: part_of UBERON:2005369 ! dorsal fin pterygiophore 6 +relationship: part_of UBERON:2005369 ! dorsal fin pterygiophore 6 + +[Term] +id: UBERON:2105378 +name: dorsal fin distal radial element 7 +namespace: none +is_a: UBERON:2100936 ! dorsal fin distal radial element +intersection_of: UBERON:2100936 ! dorsal fin distal radial element +intersection_of: part_of UBERON:2005370 ! dorsal fin pterygiophore 7 +relationship: part_of UBERON:2005370 ! dorsal fin pterygiophore 7 + +[Term] +id: UBERON:2105379 +name: dorsal fin distal radial element 8 +namespace: none +is_a: UBERON:2100936 ! dorsal fin distal radial element +intersection_of: UBERON:2100936 ! dorsal fin distal radial element +intersection_of: part_of UBERON:2005371 ! dorsal fin pterygiophore 8 +relationship: part_of UBERON:2005371 ! dorsal fin pterygiophore 8 + +[Term] +id: UBERON:2105380 +name: dorsal fin proximal radial element 3 +namespace: none +is_a: UBERON:2100947 ! dorsal fin proximal radial element +intersection_of: UBERON:2100947 ! dorsal fin proximal radial element +intersection_of: part_of UBERON:2005366 ! dorsal fin pterygiophore 3 +relationship: part_of UBERON:2005366 ! dorsal fin pterygiophore 3 + +[Term] +id: UBERON:2105381 +name: dorsal fin proximal radial element 4 +namespace: none +is_a: UBERON:2100947 ! dorsal fin proximal radial element +intersection_of: UBERON:2100947 ! dorsal fin proximal radial element +intersection_of: part_of UBERON:2005367 ! dorsal fin pterygiophore 4 +relationship: part_of UBERON:2005367 ! dorsal fin pterygiophore 4 + +[Term] +id: UBERON:2105382 +name: dorsal fin proximal radial element 5 +namespace: none +is_a: UBERON:2100947 ! dorsal fin proximal radial element +intersection_of: UBERON:2100947 ! dorsal fin proximal radial element +intersection_of: part_of UBERON:2005368 ! dorsal fin pterygiophore 5 +relationship: part_of UBERON:2005368 ! dorsal fin pterygiophore 5 + +[Term] +id: UBERON:2105383 +name: dorsal fin proximal radial element 6 +namespace: none +is_a: UBERON:2100947 ! dorsal fin proximal radial element +intersection_of: UBERON:2100947 ! dorsal fin proximal radial element +intersection_of: part_of UBERON:2005369 ! dorsal fin pterygiophore 6 +relationship: part_of UBERON:2005369 ! dorsal fin pterygiophore 6 + +[Term] +id: UBERON:2105384 +name: dorsal fin proximal radial element 7 +namespace: none +is_a: UBERON:2100947 ! dorsal fin proximal radial element +intersection_of: UBERON:2100947 ! dorsal fin proximal radial element +intersection_of: part_of UBERON:2005370 ! dorsal fin pterygiophore 7 +relationship: part_of UBERON:2005370 ! dorsal fin pterygiophore 7 + +[Term] +id: UBERON:2105385 +name: dorsal fin proximal radial element 8 +namespace: none +is_a: UBERON:2100947 ! dorsal fin proximal radial element +intersection_of: UBERON:2100947 ! dorsal fin proximal radial element +intersection_of: part_of UBERON:2005371 ! dorsal fin pterygiophore 8 +relationship: part_of UBERON:2005371 ! dorsal fin pterygiophore 8 + +[Term] +id: UBERON:2200268 +name: anal fin proximal radial cartilage +namespace: uberon/phenoscape-anatomy +def: "anal fin proximal radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +synonym: "basal radial of anal fin cartilage" EXACT [TAO:0000268] +synonym: "proximal anal-fin radial cartilage" EXACT [TAO:0000268] +is_a: UBERON:2100268 ! anal fin proximal radial element +is_a: UBERON:2201671 ! anal fin radial cartilage +intersection_of: UBERON:2100268 ! anal fin proximal radial element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2200271 +name: radial cartilage +namespace: uberon/phenoscape-anatomy +def: "radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +comment: Radials may be cartilaginous or bony; always present at the base of fins; typically support lepidotrichia. +synonym: "actinost" RELATED [TAO:0000271] +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:2100271 ! radial element +intersection_of: UBERON:2100271 ! radial element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2200508 +name: obsolete pelvic fin radial cartilage +namespace: uberon/phenoscape-anatomy +def: "pelvic fin radial element that is composed of cartilage tissue." [OBOL:automatic] +synonym: "pelvic actinost" EXACT [TAO:0000508] +synonym: "pelvic radial" EXACT [TAO:0000508] +is_obsolete: true + +[Term] +id: UBERON:2200623 +name: obsolete basipterygium cartilage +namespace: uberon/phenoscape-anatomy +def: "basipterygium element that is composed of cartilage tissue." [OBOL:automatic] +synonym: "basipterygia" EXACT PLURAL [TAO:0000623] +synonym: "basiptrygium ischiatique" EXACT [PSPUB:0000145] +synonym: "os pelvien" EXACT [PSPUB:0000164] +synonym: "pelvic cartilage" RELATED [TAO:0000623] +synonym: "pelvic plate" EXACT [] +synonym: "pubic plate" EXACT [] +is_obsolete: true + +[Term] +id: UBERON:2200646 +name: anal fin distal radial cartilage +namespace: uberon/phenoscape-anatomy +def: "anal fin distal radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +is_a: UBERON:2100646 ! anal fin distal radial element +is_a: UBERON:2201671 ! anal fin radial cartilage +intersection_of: UBERON:2100646 ! anal fin distal radial element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2200936 +name: dorsal fin distal radial cartilage +namespace: uberon/phenoscape-anatomy +def: "dorsal fin distal radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +is_a: UBERON:2100936 ! dorsal fin distal radial element +is_a: UBERON:2201672 ! dorsal fin radial cartilage +intersection_of: UBERON:2100936 ! dorsal fin distal radial element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2200947 +name: dorsal fin proximal radial cartilage +namespace: uberon/phenoscape-anatomy +def: "dorsal fin proximal radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +synonym: "basal radial cartilage of dorsal fin" EXACT [TAO:0000947] +is_a: UBERON:2100947 ! dorsal fin proximal radial element +is_a: UBERON:2201672 ! dorsal fin radial cartilage +intersection_of: UBERON:2100947 ! dorsal fin proximal radial element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2201415 +name: pelvic fin distal radial cartilage 2 +namespace: uberon/phenoscape-anatomy +def: "pelvic fin distal radial 2 element that is composed of cartilage tissue." [OBOL:automatic] +is_a: UBERON:1700006 ! paired fin radial cartilage +is_a: UBERON:2101415 ! pelvic fin distal radial element 2 +intersection_of: UBERON:2101415 ! pelvic fin distal radial element 2 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2201416 +name: pelvic fin distal radial cartilage 3 +namespace: uberon/phenoscape-anatomy +def: "pelvic fin distal radial 3 element that is composed of cartilage tissue." [OBOL:automatic] +is_a: UBERON:1700006 ! paired fin radial cartilage +is_a: UBERON:2101416 ! pelvic fin distal radial element 3 +intersection_of: UBERON:2101416 ! pelvic fin distal radial element 3 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2201417 +name: pelvic fin distal radial cartilage 1 +namespace: uberon/phenoscape-anatomy +def: "pelvic fin distal radial 1 element that is composed of cartilage tissue." [OBOL:automatic] +is_a: UBERON:1700006 ! paired fin radial cartilage +is_a: UBERON:2101417 ! pelvic fin distal radial element 1 +intersection_of: UBERON:2101417 ! pelvic fin distal radial element 1 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2201586 +name: pectoral fin radial cartilage +namespace: uberon/phenoscape-anatomy +def: "pectoral fin radial element that is composed of cartilage tissue." [OBOL:automatic] +comment: There are two paired series of pectoral radials, the proximal and the distal ones that may have variable shapes and sizes. +is_a: UBERON:1700006 ! paired fin radial cartilage +is_a: UBERON:2101586 ! pectoral fin radial element +intersection_of: UBERON:2101586 ! pectoral fin radial element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2201587 +name: pectoral fin proximal radial cartilage +namespace: uberon/phenoscape-anatomy +def: "pectoral fin proximal radial element that is composed of cartilage tissue." [OBOL:automatic] +comment: Two to four flat or slightly rod-like proximal pectoral radials, bilaterally, can be found in teleosts. Pectoral proximal radials are commonly hour-glass or rectangular shaped. The presence of four pectoral proximal radials is interpreted as a synapomorphy of teleosts (Patterson 1977, Arratia 1999). +is_a: UBERON:2101587 ! pectoral fin proximal radial element +is_a: UBERON:2201586 ! pectoral fin radial cartilage +intersection_of: UBERON:2101587 ! pectoral fin proximal radial element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2201588 +name: pectoral fin distal radial cartilage +namespace: uberon/phenoscape-anatomy +def: "pectoral fin distal radial element that is composed of cartilage tissue." [OBOL:automatic] +comment: A variable number of pectoral distal radials may be present in each pectoral fin. They are commonly small elements, rod-like, round or square shaped. +is_a: UBERON:2101588 ! pectoral fin distal radial element +is_a: UBERON:2201586 ! pectoral fin radial cartilage +intersection_of: UBERON:2101588 ! pectoral fin distal radial element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2201613 +name: dorsal fin middle radial cartilage +namespace: uberon/phenoscape-anatomy +def: "dorsal fin middle radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +comment: Synonym dorsal fin medial radial from Weitzman, 1962. +synonym: "dorsal fin medial radial cartilage" EXACT [TAO:0001613] +is_a: UBERON:2101613 ! dorsal fin middle radial element +is_a: UBERON:2201672 ! dorsal fin radial cartilage +intersection_of: UBERON:2101613 ! dorsal fin middle radial element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2201614 +name: anal fin middle radial cartilage +namespace: uberon/phenoscape-anatomy +def: "anal fin middle radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +comment: Synonym anal fin medial radial from Weitzman, 1962. +synonym: "anal fin medial radial cartilage" EXACT [TAO:0001614] +synonym: "medial anal-fin radial cartilage" EXACT [TAO:0001614] +is_a: UBERON:2101614 ! anal fin middle radial element +is_a: UBERON:2201671 ! anal fin radial cartilage +intersection_of: UBERON:2101614 ! anal fin middle radial element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2201671 +name: anal fin radial cartilage +namespace: uberon/phenoscape-anatomy +def: "anal fin radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +is_a: UBERON:2101671 ! anal fin radial element +is_a: UBERON:2205225 ! median fin radial cartilage +intersection_of: UBERON:2101671 ! anal fin radial element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2201672 +name: dorsal fin radial cartilage +namespace: uberon/phenoscape-anatomy +def: "dorsal fin radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +is_a: UBERON:2101672 ! dorsal fin radial element +is_a: UBERON:2205225 ! median fin radial cartilage +intersection_of: UBERON:2101672 ! dorsal fin radial element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2201818 +name: dorsal fin proximal radial cartilage 1 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin proximal radial 1 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +is_a: UBERON:2101818 ! dorsal fin proximal radial element 1 +is_a: UBERON:2200947 ! dorsal fin proximal radial cartilage +intersection_of: UBERON:2101818 ! dorsal fin proximal radial element 1 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2201819 +name: dorsal fin proximal radial cartilage 2 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin proximal radial 2 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +is_a: UBERON:2101819 ! dorsal fin proximal radial element 2 +is_a: UBERON:2200947 ! dorsal fin proximal radial cartilage +intersection_of: UBERON:2101819 ! dorsal fin proximal radial element 2 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2202026 +name: pectoral fin proximal radial cartilage 1 +namespace: uberon/phenoscape-anatomy +def: "pectoral fin proximal radial 1 element that is composed of cartilage tissue." [OBOL:automatic] +synonym: "first pectoral basal radial cartilage" EXACT [TAO:0002026] +is_a: UBERON:2102026 ! pectoral fin proximal radial element 1 +is_a: UBERON:2201587 ! pectoral fin proximal radial cartilage +intersection_of: UBERON:2102026 ! pectoral fin proximal radial element 1 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2202027 +name: pectoral fin proximal radial cartilage 2 +namespace: uberon/phenoscape-anatomy +def: "pectoral fin proximal radial 2 element that is composed of cartilage tissue." [OBOL:automatic] +synonym: "second pectoral basal radial cartilage" EXACT [TAO:0002027] +is_a: UBERON:2102027 ! pectoral fin proximal radial element 2 +is_a: UBERON:2201587 ! pectoral fin proximal radial cartilage +intersection_of: UBERON:2102027 ! pectoral fin proximal radial element 2 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2202028 +name: pectoral fin proximal radial cartilage 3 +namespace: uberon/phenoscape-anatomy +def: "pectoral fin proximal radial 3 element that is composed of cartilage tissue." [OBOL:automatic] +synonym: "third pectoral basal radial cartilage" EXACT [TAO:0002028] +is_a: UBERON:2102028 ! pectoral fin proximal radial element 3 +is_a: UBERON:2201587 ! pectoral fin proximal radial cartilage +intersection_of: UBERON:2102028 ! pectoral fin proximal radial element 3 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2202029 +name: pectoral fin proximal radial cartilage 4 +namespace: uberon/phenoscape-anatomy +def: "pectoral fin proximal radial 4 element that is composed of cartilage tissue." [OBOL:automatic] +synonym: "fourth pectoral basal radial cartilage" EXACT [TAO:0002029] +is_a: UBERON:2102029 ! pectoral fin proximal radial element 4 +is_a: UBERON:2201587 ! pectoral fin proximal radial cartilage +intersection_of: UBERON:2102029 ! pectoral fin proximal radial element 4 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2202277 +name: pectoral fin distal radial cartilage 1 +namespace: uberon/phenoscape-anatomy +def: "pectoral fin distal radial 1 element that is composed of cartilage tissue." [OBOL:automatic] +is_a: UBERON:2102277 ! pectoral fin distal radial element 1 +is_a: UBERON:2201588 ! pectoral fin distal radial cartilage +intersection_of: UBERON:2102277 ! pectoral fin distal radial element 1 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2202279 +name: pectoral fin distal radial cartilage 2 +namespace: uberon/phenoscape-anatomy +def: "pectoral fin distal radial 2 element that is composed of cartilage tissue." [OBOL:automatic] +is_a: UBERON:2102279 ! pectoral fin distal radial element 2 +is_a: UBERON:2201588 ! pectoral fin distal radial cartilage +intersection_of: UBERON:2102279 ! pectoral fin distal radial element 2 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2202280 +name: pectoral fin distal radial cartilage 3 +namespace: uberon/phenoscape-anatomy +def: "pectoral fin distal radial 3 element that is composed of cartilage tissue." [OBOL:automatic] +is_a: UBERON:2102280 ! pectoral fin distal radial element 3 +is_a: UBERON:2201588 ! pectoral fin distal radial cartilage +intersection_of: UBERON:2102280 ! pectoral fin distal radial element 3 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2205225 +name: median fin radial cartilage +namespace: uberon/phenoscape-anatomy +def: "median fin radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +is_a: UBERON:2105225 ! median fin radial element +is_a: UBERON:2200271 ! radial cartilage +intersection_of: UBERON:2105225 ! median fin radial element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2205226 +name: median fin proximal radial cartilage +namespace: uberon/phenoscape-anatomy +def: "median fin proximal radial element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +synonym: "ptrygiophore proximal cartilage" EXACT [PSPUB:0000164] +is_a: UBERON:2105226 ! median fin proximal radial element +is_a: UBERON:2205225 ! median fin radial cartilage +intersection_of: UBERON:2105226 ! median fin proximal radial element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2205372 +name: dorsal fin distal radial cartilage 1 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin distal radial 1 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +is_a: UBERON:2105372 ! dorsal fin distal radial element 1 +is_a: UBERON:2200936 ! dorsal fin distal radial cartilage +intersection_of: UBERON:2105372 ! dorsal fin distal radial element 1 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2205373 +name: dorsal fin distal radial cartilage 2 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin distal radial 2 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +is_a: UBERON:2105373 ! dorsal fin distal radial element 2 +is_a: UBERON:2200936 ! dorsal fin distal radial cartilage +intersection_of: UBERON:2105373 ! dorsal fin distal radial element 2 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2205374 +name: dorsal fin distal radial cartilage 3 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin distal radial 3 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +is_a: UBERON:2105374 ! dorsal fin distal radial element 3 +is_a: UBERON:2200936 ! dorsal fin distal radial cartilage +intersection_of: UBERON:2105374 ! dorsal fin distal radial element 3 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2205375 +name: dorsal fin distal radial cartilage 4 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin distal radial 4 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +is_a: UBERON:2105375 ! dorsal fin distal radial element 4 +is_a: UBERON:2200936 ! dorsal fin distal radial cartilage +intersection_of: UBERON:2105375 ! dorsal fin distal radial element 4 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2205376 +name: dorsal fin distal radial cartilage 5 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin distal radial 5 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +is_a: UBERON:2105376 ! dorsal fin distal radial element 5 +is_a: UBERON:2200936 ! dorsal fin distal radial cartilage +intersection_of: UBERON:2105376 ! dorsal fin distal radial element 5 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2205377 +name: dorsal fin distal radial cartilage 6 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin distal radial 6 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +is_a: UBERON:2105377 ! dorsal fin distal radial element 6 +is_a: UBERON:2200936 ! dorsal fin distal radial cartilage +intersection_of: UBERON:2105377 ! dorsal fin distal radial element 6 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2205378 +name: dorsal fin distal radial cartilage 7 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin distal radial 7 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +is_a: UBERON:2105378 ! dorsal fin distal radial element 7 +is_a: UBERON:2200936 ! dorsal fin distal radial cartilage +intersection_of: UBERON:2105378 ! dorsal fin distal radial element 7 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2205379 +name: dorsal fin distal radial cartilage 8 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin distal radial 8 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +is_a: UBERON:2105379 ! dorsal fin distal radial element 8 +is_a: UBERON:2200936 ! dorsal fin distal radial cartilage +intersection_of: UBERON:2105379 ! dorsal fin distal radial element 8 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2205380 +name: dorsal fin proximal radial cartilage 3 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin proximal radial 3 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +is_a: UBERON:2105380 ! dorsal fin proximal radial element 3 +is_a: UBERON:2200947 ! dorsal fin proximal radial cartilage +intersection_of: UBERON:2105380 ! dorsal fin proximal radial element 3 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2205381 +name: dorsal fin proximal radial cartilage 4 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin proximal radial 4 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +is_a: UBERON:2105381 ! dorsal fin proximal radial element 4 +is_a: UBERON:2200947 ! dorsal fin proximal radial cartilage +intersection_of: UBERON:2105381 ! dorsal fin proximal radial element 4 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2205382 +name: dorsal fin proximal radial cartilage 5 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin proximal radial 5 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +is_a: UBERON:2105382 ! dorsal fin proximal radial element 5 +is_a: UBERON:2200947 ! dorsal fin proximal radial cartilage +intersection_of: UBERON:2105382 ! dorsal fin proximal radial element 5 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2205383 +name: dorsal fin proximal radial cartilage 6 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin proximal radial 6 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +is_a: UBERON:2105383 ! dorsal fin proximal radial element 6 +is_a: UBERON:2200947 ! dorsal fin proximal radial cartilage +intersection_of: UBERON:2105383 ! dorsal fin proximal radial element 6 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2205384 +name: dorsal fin proximal radial cartilage 7 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin proximal radial 7 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +is_a: UBERON:2105384 ! dorsal fin proximal radial element 7 +is_a: UBERON:2200947 ! dorsal fin proximal radial cartilage +intersection_of: UBERON:2105384 ! dorsal fin proximal radial element 7 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:2205385 +name: dorsal fin proximal radial cartilage 8 +namespace: uberon/phenoscape-anatomy +def: "dorsal fin proximal radial 8 element that is composed of cartilage tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] +is_a: UBERON:2105385 ! dorsal fin proximal radial element 8 +is_a: UBERON:2200947 ! dorsal fin proximal radial cartilage +intersection_of: UBERON:2105385 ! dorsal fin proximal radial element 8 +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:3000002 +name: alary cartilage +namespace: uberon/phenoscape-anatomy +def: "Paired, cup-shaped cartilage that are dorsal to the septomaxillae and anterior to the oblique cartilage. The anterior, convex face of each alary cartilage is synchondrotically fused to the superior prenasal cartilage and the ventral edge is fused to the superior margin of the crista intermedia." [AAO:LAP] +synonym: "alinasal cartilage" RELATED [UBERON:3000002] +synonym: "cartilago alaris" RELATED [UBERON:3000002] +synonym: "cartilago alaris nasi" RELATED [UBERON:3000002] +synonym: "cartilago cupullaris" RELATED [UBERON:3000002] +synonym: "copula anterior" RELATED [UBERON:3000002] +synonym: "naseflngelknorpel" RELATED [UBERON:3000002] +synonym: "processus alaris" RELATED [UBERON:3000002] +synonym: "second upper labial" RELATED [UBERON:3000002] +is_a: UBERON:0001823 ! nasal cartilage +is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000003 +name: alary process of premaxilla +namespace: uberon/phenoscape-anatomy +def: "Dorsal process that extends toward the nasal bone. The posterior (inner) face of each alary process is concave and is invested dorsomedially by the superior prenasal cartilage and ventromedially by the inferior prenasal cartilage." [AAO:LAP] +synonym: "dorsal process of premaxilla" RELATED [UBERON:3000003] +synonym: "pars dorsalis of premaxilla" RELATED [UBERON:3000003] +synonym: "pars facialis of premaxilla" RELATED [UBERON:3000003] +synonym: "pars frontalis of premaxilla" RELATED [UBERON:3000003] +synonym: "pars prenasalis of premaxilla" RELATED [UBERON:3000003] +synonym: "premaxillary spine" RELATED [UBERON:3000003] +synonym: "processus ascendens of premaxilla" RELATED [UBERON:3000003] +synonym: "processus frontalis of premaxilla" RELATED [UBERON:3000003] +synonym: "processus nasalis of premaxilla" RELATED [UBERON:3000003] +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0002244 ! premaxilla +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000006 +name: alveolar foramen +namespace: uberon/phenoscape-anatomy +def: "Foramen for the R. alveolaris of Nerve VII and the alveolar artery." [AAO:LAP] +synonym: "inferior dental foramen" RELATED [UBERON:3000006] +is_a: UBERON:0011772 ! lower jaw opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000012 +name: angulosplenial coronoid process +namespace: uberon/phenoscape-anatomy +def: "Point of insertion of the adductor mandibulae musculature." [AAO:LAP] +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:3000966 ! angulosplenial +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000015 +name: anterior maxillary process +namespace: uberon/phenoscape-anatomy +def: "Process that extends anteriorly from the planum triangulare and invests the medial face of the pars facialis of the maxilla." [AAO:LAP] +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000016 +name: anterior nasal wall +namespace: uberon/phenoscape-anatomy +def: "Paired, vertical, and relatively straight plates that form the anterior limit of the nasal capsule." [AAO:LAP] +synonym: "prenasal wall" RELATED [UBERON:3000016] +synonym: "solum anterius" RELATED [UBERON:3000016] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000017 +name: anterior process of pars palatina of maxilla +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0004527 ! alveolar process of maxilla +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000018 +name: anterior ramus of pterygoid +namespace: uberon/phenoscape-anatomy +def: "In a triradiate pterygoid, the process that extends anteriorly towards the maxilla." [AAO:LAP] +synonym: "ramus maxillaris of pterygoid" RELATED [UBERON:3000018] +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0010389 ! pterygoid bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000020 +name: anterolateral process of frontoparietal +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0011639 ! frontoparietal bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000022 +name: antorbital process +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:3000400 ! pars facialis of maxilla +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000031 +name: ascending process of palatoquadrate +namespace: uberon/phenoscape-anatomy +synonym: "apophyse ascendens" RELATED [UBERON:3000031] +synonym: "cartilage craniofacial" RELATED [UBERON:3000031] +synonym: "oberste abteilung des zweiten visceralbogens" RELATED [UBERON:3000031] +synonym: "pedicle" RELATED [UBERON:3000031] +synonym: "pediculus" RELATED [UBERON:3000031] +synonym: "processus ascendens of palatoquadrate" RELATED [UBERON:3000031] +synonym: "schlafenflugelknorpel" RELATED [UBERON:3000031] +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0004752 ! palatoquadrate cartilage +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000032 +name: auditory muscles +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0002376 ! cranial muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000036 +name: basal process of palatoquadrate +namespace: uberon/phenoscape-anatomy +def: "Process that extends medially from the ventromedial corner of the palatoquadrate cartilage and articulates or fuses to the anterior wall of the otic capsule via the basitrabecular process." [AAO:LAP] +synonym: "processus basalis" RELATED [UBERON:3000036] +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: has_part UBERON:3000292 ! medial ramus of pterygoid +relationship: part_of UBERON:0004752 ! palatoquadrate cartilage +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000037 +name: basicranial fenestra +namespace: uberon/phenoscape-anatomy +def: "Ventral opening of the neurocranium." [AAO:LAP] +is_a: UBERON:3000051 ! braincase and otic capsule opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000038 +name: basimandibulare +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0003278 ! skeleton of lower jaw +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000041 +name: Bidder's organ +namespace: uberon/phenoscape-anatomy +def: "Anatomical structure which forms from an enlargement of the anterior portion of each gonad in all male bufonid larvae and consists of ovarian tissues." [AAO:BJB] +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0005156 ! reproductive structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000044 +name: obsolete blastomere +namespace: uberon/phenoscape-anatomy +alt_id: UBERON:3010282 +def: "Undifferentiated cell that is produced by early cleavages of the fertilized egg (zygote)." [AAO:BJB] +is_obsolete: true +replaced_by: UBERON:2000093 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000050 +name: braincase and auditory apparatus +namespace: uberon/phenoscape-anatomy +def: "The part of the skull that encloses the brain and surrounds the inner ear." [AAO:LAP] +is_a: UBERON:0010912 ! subdivision of skeleton +relationship: part_of UBERON:0010323 ! cranial skeletal system +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000051 +name: braincase and otic capsule opening +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0004705 ! fenestra +relationship: part_of UBERON:3000050 ! braincase and auditory apparatus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000052 +name: braincase and otic capsule skeleton +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000050 ! braincase and auditory apparatus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000057 +name: canalis semicircularis anterior +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0001840 ! semicircular canal +relationship: part_of UBERON:0001842 ! posterior semicircular canal +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000059 +name: capsular process +namespace: uberon/phenoscape-anatomy +def: "Narrow process of the skeletal support that projects forward." [AAO:LAP] +is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:3000565 ! skeletal support for eminentia olfactoria +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000061 +name: obsolete cartilage bridge of nasal skeleton +namespace: uberon/phenoscape-anatomy +is_obsolete: true +replaced_by: UBERON:3000381 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000065 +name: obsolete forelimb opening +namespace: uberon/phenoscape-anatomy +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000068 +name: cartilago ectochoanalis +namespace: uberon/phenoscape-anatomy +def: "Lateral cartilaginous border of the fenestra endochoanalis." [AAO:LAP] +is_a: UBERON:0001823 ! nasal cartilage +is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000069 +name: cartilago infranarina +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0001823 ! nasal cartilage +is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000074 +name: cartilago orbitalis +namespace: uberon/phenoscape-anatomy +def: "Lateral wall of chondrocranial braincase between lamina orbitonasalis and pila metoptica." [AAO:LT] +synonym: "dorsale randspange" RELATED [UBERON:3000074] +is_a: UBERON:0003933 ! cranial cartilage +relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000078 +name: cartilago prootico-occipitalis +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0003933 ! cranial cartilage +relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000079 +name: cartilago retronarina +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0001823 ! nasal cartilage +is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000085 +name: cavum inferius +namespace: uberon/phenoscape-anatomy +def: "Accessory cavity located ventral to the cavum principale and cavum medius." [AAO:LAP] +is_a: UBERON:0001707 ! nasal cavity +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000086 +name: cavum internasale +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0001707 ! nasal cavity +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000087 +name: cavum medius +namespace: uberon/phenoscape-anatomy +def: "Small accessory cavity located between the cavum principale and cavum inferius." [AAO:LAP] +is_a: UBERON:0001707 ! nasal cavity +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000088 +name: cavum praenasale +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0001707 ! nasal cavity +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000089 +name: cavum principale +namespace: uberon/phenoscape-anatomy +def: "The largest part of the nasal cavity, containing the olfactory epithelium." [AAO:LAP] {comment="AAO:EJS"} +is_a: UBERON:0001707 ! nasal cavity +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000099 +name: obsolete connective tissue proper +namespace: uberon/phenoscape-anatomy +is_obsolete: true +consider: UBERON:0002384 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000101 +name: hyale +namespace: uberon/phenoscape-anatomy +def: "Anterior-lateral projections from the corpus of the hyoid apparatus." [] +comment: Found in Anura (frogs) only. +synonym: "anterior cornua" EXACT [] +is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0010272 ! hyoid apparatus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000110 +name: crista contacta +namespace: uberon/phenoscape-anatomy +def: "Thin, horizontal ridge that extends medially from the corpus of the septomaxilla; it lays on the lamina inferior." [AAO:LAP] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:3000645 ! corpus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000111 +name: crista dentalis of maxilla +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0004527 ! alveolar process of maxilla +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000112 +name: crista dentalis of premaxilla +namespace: uberon/phenoscape-anatomy +synonym: "dental ridge of premaxilla" RELATED [UBERON:3000112] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0034898 ! alveolar ridge of premaxilla +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000113 +name: crista intermedia +namespace: uberon/phenoscape-anatomy +def: "Paired, oblique plates of cartilage located ventral to the alary cartilages. The dorsomedial margin of each crista intermedia is fused to the transitional zone between the septum nasi and the tectum nasi, whereas the ventrolateral margin bears two laminae, the lamina superior and the lamina inferior." [AAO:LAP] +is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000115 +name: crista lateralis of premaxilla +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002244 ! premaxilla +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000117 +name: crista subnasalis +namespace: uberon/phenoscape-anatomy +def: "Ventral crest of the paries nasi." [AAO:LAP] +synonym: "subnasal crest" RELATED [UBERON:3000117] +is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000118 +name: crista supraorbitalis +namespace: uberon/phenoscape-anatomy +def: "Short and blunt process that extends posteriorly from the posteromedial margin of the postnasal wall, on the anterodorsal corner of the orbit above the medial orbitonasal foramen." [AAO:LAP] +is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000121 +name: obsolete dense connective tissue +namespace: uberon/phenoscape-anatomy +def: "Also known as fibrous connective tissue. Forms ligaments and tendons and is characterized by densely packed collagen fibers that have great tensile strength." [AAO:LAP] +is_obsolete: true +replaced_by: UBERON:0011823 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000131 +name: dilatatio alaris +namespace: uberon/phenoscape-anatomy +def: "Flange that extends ventrally from about the middle portion of the margo mandibularis." [AAO:LAP] +synonym: "ventral flange of anterior ramus of pterygoid" RELATED [UBERON:3000131] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:3000280 ! margo mandibularis of pterygoid +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000132 +name: obsolete dorsal plate +namespace: uberon/phenoscape-anatomy +comment: Term describes shape of tectum nasi +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000141 +name: endolymphatic system +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000467 ! anatomical system +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001846 ! internal ear +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000155 +name: extremitas anterior +namespace: uberon/phenoscape-anatomy +def: "Large anterior outgrowth of the septomaxilla that is directed into the space between the alary cartilage and the lamina inferior." [AAO:LAP] +synonym: "anterior ramus" RELATED [UBERON:3000155] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0011167 ! septomaxilla bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000160 +name: fenestra dorsalis nasi +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000316 ! nasal opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000161 +name: fenestra endochoanalis +namespace: uberon/phenoscape-anatomy +def: "Opening on the ventral aspect of the nasal capsule. It contains the apertura nasalis interna." [AAO:LAP] +synonym: "fenestra exochoanalis" RELATED [UBERON:3000161] +is_a: UBERON:3000316 ! nasal opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000162 +name: fenestra endonarina communis +namespace: uberon/phenoscape-anatomy +def: "Opening on the anterolateral aspect of the nasal capsule. It contains the apertura nasalis externa." [AAO:LAP] +synonym: "apertura nasalis externa" RELATED [UBERON:3000162] +synonym: "fenestra narina" RELATED [UBERON:3000162] +synonym: "narial fenestra" RELATED [UBERON:3000162] +is_a: UBERON:3000316 ! nasal opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000164 +name: fenestra lateralis nasi +namespace: uberon/phenoscape-anatomy +def: "Opening on the lateral side of the nasal capsule." [AAO:LAP] +synonym: "fenestra infraconchalis" RELATED [UBERON:3000164] +synonym: "fenestra retronarina" RELATED [UBERON:3000164] +is_a: UBERON:3000316 ! nasal opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000166 +name: fenestra nasobasalis +namespace: uberon/phenoscape-anatomy +def: "Small opening at the anterior tip of the nasal capsule, on the floor of the cavum inferius. It is located medially to the base of the inferior prenasal cartilage and serves for the passage of the ramus medialis narium and arteria orbitonasalis." [AAO:LAP] +synonym: "basal fenestra" RELATED [UBERON:3000166] +synonym: "fenestra basalis nasi" RELATED [UBERON:3000166] +synonym: "foramen apicale" RELATED [UBERON:3000166] +synonym: "foramen epiphaniale" RELATED [UBERON:3000166] +synonym: "nasobasal fenestra" RELATED [UBERON:3000166] +is_a: UBERON:3000316 ! nasal opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000167 +name: fenestra nasolateralis +namespace: uberon/phenoscape-anatomy +def: "Elongated opening located on the lateral side of the nasal capsule." [AAO:LAP] +is_a: UBERON:3000316 ! nasal opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000170 +name: fenestra precerebralis +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000316 ! nasal opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000171 +name: fenestra prechoanalis +namespace: uberon/phenoscape-anatomy +def: "Large opening of the nasal floor anterior to the fenestra endochoanalis." [AAO:LAP] +is_a: UBERON:3000316 ! nasal opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000177 +name: flange of quadratojugal +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0011267 ! quadratojugal bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000178 +name: footplate of pars media plectri +namespace: uberon/phenoscape-anatomy +def: "Independent, horizontal bar of cartilage located on the anterior part of the fenestra ovalis in front of the pars interna plectri." [AAO:LAP] +synonym: "fenestral plate" RELATED [UBERON:3000178] +synonym: "interstapediale" RELATED [UBERON:3000178] +synonym: "otostapes" RELATED [UBERON:3000178] +synonym: "pars otica columellae" RELATED [UBERON:3000178] +synonym: "pseudooperculum" RELATED [UBERON:3000178] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:3000408 ! pars media plectri +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000179 +name: foramen acusticum +namespace: uberon/phenoscape-anatomy +synonym: "acoustic foramen" RELATED [UBERON:3000179] +is_a: UBERON:3000051 ! braincase and otic capsule opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000180 +name: foramen acusticum anterius +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000051 ! braincase and otic capsule opening +relationship: part_of UBERON:3000179 ! foramen acusticum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000181 +name: foramen acusticum maius +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000051 ! braincase and otic capsule opening +relationship: part_of UBERON:3000180 ! foramen acusticum anterius +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000182 +name: foramen acusticum minus +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000051 ! braincase and otic capsule opening +relationship: part_of UBERON:3000180 ! foramen acusticum anterius +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000183 +name: foramen acusticum posterius +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000051 ! braincase and otic capsule opening +relationship: part_of UBERON:3000179 ! foramen acusticum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000185 +name: foramen endolymphaticum +namespace: uberon/phenoscape-anatomy +synonym: "endolymphatic foramen" RELATED [UBERON:3000185] +is_a: UBERON:3000051 ! braincase and otic capsule opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000189 +name: foramen orbitonasale laterale +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000316 ! nasal opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000190 +name: foramen orbitonasale mediale +namespace: uberon/phenoscape-anatomy +synonym: "canalis orbitonasalis" RELATED [UBERON:3000190] +synonym: "canalis orbitonasalis medialis" RELATED [UBERON:3000190] +synonym: "foramen orbitonasale" RELATED [UBERON:3000190] +is_a: UBERON:3000316 ! nasal opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000192 +name: foramen perilymphaticum +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000051 ! braincase and otic capsule opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000193 +name: foramen perilymphaticum accessorium +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000051 ! braincase and otic capsule opening +relationship: part_of UBERON:3000192 ! foramen perilymphaticum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000195 +name: foramen perilymphaticus inferius +namespace: uberon/phenoscape-anatomy +synonym: "foramen pro aquaeducto cochleae" RELATED [UBERON:3000195] +synonym: "inferior perilymphatic foramen" RELATED [UBERON:3000195] +is_a: UBERON:3000051 ! braincase and otic capsule opening +relationship: part_of UBERON:3000192 ! foramen perilymphaticum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000208 +name: obsolete frontoparietal constriction +namespace: uberon/phenoscape-anatomy +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000209 +name: frontoparietal fontanelle +namespace: uberon/phenoscape-anatomy +def: "Dorsal opening of the neurocranium." [AAO:LAP] +is_a: UBERON:3000051 ! braincase and otic capsule opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000224 +name: hyobranchial muscle +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0002376 ! cranial muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000226 +name: hyolaryngeal complex +namespace: uberon/phenoscape-anatomy +def: "Complex formed by two units, the hyoid and laryngeal apparatuses, which are both derived from the larval hyobranchial skeleton." [AAO:LAP] +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0008895 ! splanchnocranium +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000234 +name: inferior prenasal cartilage +namespace: uberon/phenoscape-anatomy +def: "Elongate cartilage that extends anteroventrally from the solum nasi to abut the ventral portion of the posterior aspect of the alary process of the premaxilla. It was first described by Wiedersheim in 1876." [AAO:LAP] +synonym: "inferior prenasal process" RELATED [UBERON:3000234] +synonym: "processus prenasalis inferior" RELATED [UBERON:3000234] +synonym: "processus prenasalis inferior lateralis" RELATED [UBERON:3000234] +is_a: UBERON:0001823 ! nasal cartilage +is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000237 +name: infrarostral cartilage +namespace: uberon/phenoscape-anatomy +def: "Larval lower jaw lies anterior to Meckels cartilage." [AAO:EJS] +synonym: "infralabial cartilage" RELATED [UBERON:3000237] +synonym: "mentomeckelian cartilage" RELATED [UBERON:3000237] +is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0013765 ! digestive system element +relationship: part_of UBERON:0001708 ! jaw skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000254 +name: lamella alaris +namespace: uberon/phenoscape-anatomy +def: "Dorsal plate of the squamosal." [AAO:LAP] +synonym: "horizontal arm of squamosal" RELATED [UBERON:3000254] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0001695 ! squamous part of temporal bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000255 +name: lamina anterior of pars facialis +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:3000400 ! pars facialis of maxilla +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000259 +name: lamina inferior +namespace: uberon/phenoscape-anatomy +def: "Lateral expansion of the crista intermedia that serves as the floor of the cavum medium." [AAO:LAP] +synonym: "lamina inferior cristae intermediae" RELATED [UBERON:3000259] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0006332 ! nasal capsule +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000260 +name: lamina nariochoanalis +namespace: uberon/phenoscape-anatomy +def: "Free, dorsal margin of the lamina inferior." [AAO:LAP] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0006332 ! nasal capsule +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000263 +name: lamina precerebralis +namespace: uberon/phenoscape-anatomy +def: "Posterior face of septum nasi." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000264 +name: lamina superior +namespace: uberon/phenoscape-anatomy +def: "Lateral expansion of the crista intermedia that serves as the roof of the cavum medium." [AAO:LAP] +synonym: "lamina superior cristae intermediae" RELATED [UBERON:3000264] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000265 +name: obsolete larval structure +namespace: uberon/phenoscape-anatomy +def: "Anatomical structure that is part of the larva." [AAO:EJS] +comment: Obsolete term in XAO. redundant with stage+skeletal system. Can be properly reinstated if needed. +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000280 +name: margo mandibularis of pterygoid +namespace: uberon/phenoscape-anatomy +def: "Ventrally directed margin that connects the anterior and posterior rami of the pterygoid." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0010389 ! pterygoid bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000281 +name: margo orbitalis of maxilla +namespace: uberon/phenoscape-anatomy +def: "Dorsal margin of the maxilla between the frontal and zygomatico-maxillary processes." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0002397 ! maxilla +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000282 +name: margo orbitalis of pterygoid +namespace: uberon/phenoscape-anatomy +def: "Margin that connects the anterior and medial rami of the pterygoid." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0010389 ! pterygoid bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000283 +name: margo orbitalis of squamosal +namespace: uberon/phenoscape-anatomy +def: "Anterior margin of the squamosal that takes part in the formation of the orbit." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:3000254 ! lamella alaris +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000284 +name: margo tympanicus of pterygoid +namespace: uberon/phenoscape-anatomy +def: "Margin that connects the posterior and medial rami of the pterygoid." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0010389 ! pterygoid bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000288 +name: maxillopalatine +namespace: uberon/phenoscape-anatomy +def: "A compound bone consisting of maxilla and palatine, can also contain a prefrontal and/or lacrimal; present in adult Gymnophiona." [AAO:EJS] +is_a: UBERON:0008193 ! pneumatized bone +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0011597 ! bone of upper jaw +relationship: has_part UBERON:0001682 ! palatine bone +relationship: has_part UBERON:0002397 ! maxilla +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000290 +name: medial inferior prenasal cartilage +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0001823 ! nasal cartilage +is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000291 +name: medial orbitonasal foramen +namespace: uberon/phenoscape-anatomy +def: "Opening on the postnasal wall for the medial branch (= ramus medialis nasi) of the ophthalmicus nerve." [AAO:LAP] +is_a: UBERON:3000316 ! nasal opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000292 +name: medial ramus of pterygoid +namespace: uberon/phenoscape-anatomy +def: "In a triradiate pterygoid, the process that extends medially towards the otic capsule." [AAO:LAP] +synonym: "ramus interior of pterygoid" RELATED [UBERON:3000292] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0010389 ! pterygoid bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000294 +name: median prenasal process +namespace: uberon/phenoscape-anatomy +def: "Anterior projection of the septum nasi that protrudes through the anterior nasal wall." [AAO:LAP] +synonym: "processus prenasalis medius" RELATED [UBERON:3000294] +is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0001706 ! nasal septum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000295 +name: median symphysis +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0001709 ! upper jaw region +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000309 +name: narial muscles +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0002376 ! cranial muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000316 +name: nasal opening +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0006332 ! nasal capsule +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000323 +name: nasopremaxilla +namespace: uberon/phenoscape-anatomy +def: "A compound bone consisting of premaxilla, nasal and sometimes septomaxilla in adult members of Caeciliidae and Typhlonectidae." [AAO:EJS] +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0011597 ! bone of upper jaw +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000329 +name: oblique cartilage +namespace: uberon/phenoscape-anatomy +def: "Semi-circular cartilaginous sheet that lies lateral to the side of the septum nasi." [AAO:LAP] +synonym: "cartilago obliqua" RELATED [UBERON:3000329] +synonym: "cartilago obliqua nasi" RELATED [UBERON:3000329] +synonym: "cartilago obliquo" RELATED [UBERON:3000329] +synonym: "dorsal process" RELATED [UBERON:3000329] +synonym: "lamina obliqua" RELATED [UBERON:3000329] +is_a: UBERON:0001823 ! nasal cartilage +is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000332 +name: oculomotor foramen +namespace: uberon/phenoscape-anatomy +synonym: "nerve foramen III" EXACT [] +is_a: UBERON:3000051 ! braincase and otic capsule opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000333 +name: olfactory foramen +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000316 ! nasal opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000341 +name: optic fenestra +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000051 ! braincase and otic capsule opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000344 +name: orbitonasal foramen +namespace: uberon/phenoscape-anatomy +def: "Foramen that forms a passage for one of the branches of the trigeminal nerve into the nasal region." [AAO:LAP] +is_a: UBERON:3000051 ! braincase and otic capsule opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000347 +name: obsolete os articulare +namespace: uberon/phenoscape-anatomy +def: "Ossified posterior articular portion of Meckel's cartilage." [AAO:LAP] +is_obsolete: true +replaced_by: UBERON:2001805 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000348 +name: os basale +namespace: uberon/phenoscape-anatomy +def: "A bone that forms both the floor of the braincase and the posterior part of the skull." [UBERON:cjm] +is_a: UBERON:0001474 ! bone element +relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000362 +name: obsolete other muscles +namespace: uberon/phenoscape-anatomy +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000363 +name: otic ligament +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0008846 ! skeletal ligament +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0013765 ! digestive system element +relationship: part_of UBERON:0004752 ! palatoquadrate cartilage +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000364 +name: otic plate of pterygoid +namespace: uberon/phenoscape-anatomy +def: "Osseous expansion of the posterior and medial rami of the pterygoid." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0010389 ! pterygoid bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000365 +name: otic process +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0004752 ! palatoquadrate cartilage +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000367 +name: otic ramus of squamosal +namespace: uberon/phenoscape-anatomy +def: "Ramus (process) that extends medially toward the otic capsule." [AAO:LAP] +synonym: "posterior ramus" RELATED [UBERON:3000367] +synonym: "ramus paroticus" RELATED [UBERON:3000367] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:3000254 ! lamella alaris +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000368 +name: otoccipital +namespace: uberon/phenoscape-anatomy +def: "Fused prootic and exoccipital bones." [AAO:LAP] +is_a: UBERON:0002513 ! endochondral bone +relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000372 +name: obsolete palatine +namespace: uberon/phenoscape-anatomy +def: "Sliver of bone that invest part of or all the posterior aspect of each antorbital plane." [AAO:LAP] +synonym: "neopalatine" BROAD [UBERON:3000372] +is_obsolete: true +replaced_by: UBERON:0001682 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000374 +name: obsolete palatine process of pars palatina of premaxilla +namespace: uberon/phenoscape-anatomy +synonym: "median palatal squame " RELATED [UBERON:3000374] +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000375 +name: palatine process of the pars facialis of the maxilla +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:3000400 ! pars facialis of maxilla +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000376 +name: palatine tooth +namespace: uberon/phenoscape-anatomy +synonym: "palatine teeth" RELATED [UBERON:3000376] +is_obsolete: true +replaced_by: UBERON:0012073 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000380 +name: palatoquadrate articular process +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0004752 ! palatoquadrate cartilage +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000381 +name: paranasal commissure +namespace: uberon/phenoscape-anatomy +def: "Cartilaginous bridge that extends posteriorly to the anterolateral corner of the posterior nasal wall." [AAO:LAP] +synonym: "commissura lateralis nasi" RELATED [UBERON:3000381] +synonym: "connection between lamina nariochoanalis and postnasal wall" RELATED [UBERON:3000381] +synonym: "processus lingularis" RELATED [UBERON:3000381] +is_a: UBERON:0001823 ! nasal cartilage +is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000384 +name: parasagittal crest +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0011639 ! frontoparietal bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000386 +name: cultriform process +namespace: uberon/phenoscape-anatomy +def: "Process that extends anteriorly from the orbitotemporal region." [AAO:LAP] +synonym: "pars medialis" RELATED [UBERON:3000386] +synonym: "rostrum" RELATED [UBERON:3000386] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0004745 ! parasphenoid +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000387 +name: subotic alae +namespace: uberon/phenoscape-anatomy +def: "Paired processes extending lateraly from the posterior body of the parasphenoid that, when present, support the otic capsules ventrally." [AAO:LAP] +synonym: "processus lateralis" RELATED [UBERON:3000387] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0004745 ! parasphenoid +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000388 +name: parasphenoid tooth +namespace: uberon/phenoscape-anatomy +synonym: "parasphenoid teeth" RELATED [UBERON:3000388] +is_a: UBERON:0001091 ! calcareous tooth +relationship: part_of UBERON:0003672 ! dentition +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000389 +name: paries nasi +namespace: uberon/phenoscape-anatomy +def: "Paired, elongate, ventrolaterally-orieted cartilaginous structures that extend to the premaxilla-maxilla articulation." [AAO:LAP] +is_a: UBERON:0001823 ! nasal cartilage +is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000393 +name: pars amphibiorum +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000394 +name: pars articularis of mandibular arch +namespace: uberon/phenoscape-anatomy +def: "Posterior end of Meckel's cartilage that forms the articular head of the mandibular arch." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0003107 ! Meckel's cartilage +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000395 +name: pars basilaris +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000396 +name: obsolete pars dentalis of maxilla +namespace: uberon/phenoscape-anatomy +def: "Tooth-bearing part of the maxilla." [AAO:LAP] +synonym: "crista dentalis" RELATED [UBERON:3000396] +is_obsolete: true +replaced_by: UBERON:0004527 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000397 +name: obsolete pars dentalis of premaxilla +namespace: uberon/phenoscape-anatomy +def: "Tooth-bearing part of the premaxilla." [AAO:LAP] +is_obsolete: true +replaced_by: UBERON:0034898 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000399 +name: pars externa plectri +namespace: uberon/phenoscape-anatomy +synonym: "extracolumellare" RELATED [UBERON:3000399] +synonym: "extrapediale" RELATED [UBERON:3000399] +synonym: "extraplectral" RELATED [UBERON:3000399] +synonym: "extrastapes" RELATED [UBERON:3000399] +synonym: "hyostapes" RELATED [UBERON:3000399] +synonym: "medio-stapedial" RELATED [UBERON:3000399] +synonym: "pars quadrata columellae" RELATED [UBERON:3000399] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:3000443 ! plectral apparatus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000400 +name: pars facialis of maxilla +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0002397 ! maxilla +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000401 +name: pars facialis of maxillopalatine +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:3000288 ! maxillopalatine +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000405 +name: pars inferior of labyrinth +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001846 ! internal ear +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000406 +name: pars interna plectri +namespace: uberon/phenoscape-anatomy +def: "Plate-like structure that lies in the fenestra ovalis. It arises within the membrana opercularis in the posterior part of the fenestra." [AOO:LAP] +synonym: "operculum auris" RELATED [UBERON:3000406] +synonym: "operculum fenestrae ovalis" RELATED [UBERON:3000406] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:3000443 ! plectral apparatus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000408 +name: pars media plectri +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:3000443 ! plectral apparatus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000413 +name: obsolete pars palatina of maxilla +namespace: uberon/phenoscape-anatomy +def: "Lingual ledge on the inner surface of the maxilla." [AAO:LAP] +synonym: "lamina horizontalis" RELATED [UBERON:3000413] +is_obsolete: true +replaced_by: UBERON:0005871 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000414 +name: obsolete pars palatina of premaxilla +namespace: uberon/phenoscape-anatomy +def: "Lingual ledge on the inner surface of the premaxilla." [AAO:LAP] +is_obsolete: true +replaced_by: UBERON:0034900 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000428 +name: perilymphatic system +namespace: uberon/phenoscape-anatomy +def: "Consists of enlarged cistern against which the operculum and footplate of the columella rest in the oval window. Together with the endolymphatic systems comprises the membranous labryinth of the inner ear. Duellman and Trueb 1994." [] +is_a: UBERON:0001032 ! sensory system +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001846 ! internal ear +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000431 +name: pila antoptica +namespace: uberon/phenoscape-anatomy +def: "A strut of cartilage extending dorsally from the basal plate and with other similar cartilages forming the sides of the brain case. The pila antoptica is posterior to pila metoptica together with which it may enclose the foramen for the ocular motor nerve and opthalmica magna artery. " [] +is_a: UBERON:0003932 ! cartilage element of chondrocranium +relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000432 +name: pila metoptica +namespace: uberon/phenoscape-anatomy +def: "A strut of cartilage extending dorsally from the basal plate and with other similar cartilages forming the sides of the brain case. The pila metoptica is anterior to pila antoptica together with which it may enclose the foramen for the ocular motor nerve and opthalmica magna artery. Anterior to the pila antoptica is the pila preoptica (another pillar of cartilage) between these two cartilages emerges the optic and trochlear nerves." [] +is_a: UBERON:0003932 ! cartilage element of chondrocranium +relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000433 +name: pineal foramen +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005744 ! bone foramen +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0011639 ! frontoparietal bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000434 +name: planum antorbitale +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0001823 ! nasal cartilage +is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000437 +name: planum conchale +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0001823 ! nasal cartilage +is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000438 +name: planum internasale +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0001823 ! nasal cartilage +is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000440 +name: planum terminale +namespace: uberon/phenoscape-anatomy +def: "Vertical plate of cartilage that is fused posterodorsally to the oblique cartilage and anteriorly to the lamina inferior." [AAO:LAP] +synonym: "pars terminalis" RELATED [UBERON:3000440] +synonym: "terminal plate" RELATED [UBERON:3000440] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000441 +name: planum triangulare +namespace: uberon/phenoscape-anatomy +def: "Cartilaginous, distal expansion of the lamina orbitonasalis that invests the pars facialis of the maxilla medially." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000443 +name: plectral apparatus +namespace: uberon/phenoscape-anatomy +def: "Complex sound-conducting anatomical structure." [AAO:LAP] +is_a: UBERON:0001686 ! auditory ossicle bone +relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000446 +name: posterior condyle +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:3000515 ! pseudoangular +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000448 +name: posterior maxillary process +namespace: uberon/phenoscape-anatomy +def: "Process that extends posteriorly from the planum triangulare and invests the maxilla laterally and the anterior ramus of the pterygoid medially." [AAO:LAP] +is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000449 +name: posterior maxillary process dorsal process +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:3000448 ! posterior maxillary process +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000450 +name: posterior mental process +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0003278 ! skeleton of lower jaw +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000451 +name: posterior ramus of pterygoid +namespace: uberon/phenoscape-anatomy +def: "In a triradiate pterygoid, the process that extends posterolaterally towards the jaw articulation." [AAO:LAP] +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0010389 ! pterygoid bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000453 +name: posterolateral vomerine process +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002396 ! vomer +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000454 +name: postnasal wall +namespace: uberon/phenoscape-anatomy +def: "Paired, anteriorly concave structures that form the posterior limit of nasal capsule. It consists of two parts: a ventral piece, the lamina orbitonasalis, and a dorsal plate that is part of the tectum nasi." [AAO:LAP] +synonym: "posterior wall of nasal capsule" BROAD [] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000459 +name: prearticular coronoid process +namespace: uberon/phenoscape-anatomy +def: "Point of insertion of the masticatory musculature." [AAO:LAP] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0011637 ! prearticular bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000464 +name: obsolete premaxillary tooth +namespace: uberon/phenoscape-anatomy +synonym: "premaxillary teeth" RELATED [UBERON:3000464] +is_obsolete: true +replaced_by: UBERON:2001626 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000467 +name: preorbital process of the pars facialis of the maxilla +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:3000400 ! pars facialis of maxilla +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000473 +name: obsolete presumptive epidermis +namespace: uberon/phenoscape-anatomy +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000475 +name: obsolete presumptive integument +namespace: uberon/phenoscape-anatomy +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000486 +name: processus ascendens plectri +namespace: uberon/phenoscape-anatomy +def: "Cartilaginous or ligamentous connection between the pars externa plectri and the crista parotica." [AAO:LAP] +synonym: "laterohyale" RELATED [UBERON:3000486] +synonym: "processus ascendens columellae" RELATED [UBERON:3000486] +synonym: "processus dorsalis columellae" RELATED [UBERON:3000486] +synonym: "processus superior columellae" RELATED [UBERON:3000486] +synonym: "suprastapediale" RELATED [UBERON:3000486] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:3000399 ! pars externa plectri +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000492 +name: processus infrafenestralis +namespace: uberon/phenoscape-anatomy +def: "Posterior part of the corpus of the septomaxilla; the posterior surface of the processus infrafenestralis is in contact with the oblique cartilage." [AAO:LAP] +synonym: "dorsal crest" RELATED [UBERON:3000492] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:3000645 ! corpus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000493 +name: processus internus of pseudoangular +namespace: uberon/phenoscape-anatomy +synonym: "processus internus" BROAD [] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:3000515 ! pseudoangular +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000494 +name: processus lingualis of pterygoid +namespace: uberon/phenoscape-anatomy +def: "Dorsolateral process of the of the medial ramus of the pterygoid." [AAO:LAP] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:3000292 ! medial ramus of pterygoid +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000500 +name: processus posterior of maxilla +namespace: uberon/phenoscape-anatomy +def: "Posterior, toothless portion of the maxilla by which it usually comes in contact with the quadratojugal." [AAO:LAP] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002397 ! maxilla +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000505 +name: processus pterygoideus of maxilla +namespace: uberon/phenoscape-anatomy +def: "Posterior end of the pars palatina of the maxilla that is in contact with the anterior ramus of the pterygoid." [AAO:LAP] +is_a: UBERON:0004527 ! alveolar process of maxilla +is_a: UBERON:0004530 ! bony projection +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000509 +name: processus suprafenestralis +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:3000645 ! corpus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000512 +name: processus zygomatico-maxillaris +namespace: uberon/phenoscape-anatomy +def: "Posterodorsal extension of the maxilla by which it establishes contact with the squamosal." [AAO:LAP] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002397 ! maxilla +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000515 +name: pseudoangular +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004768 ! bone of lower jaw +relationship: has_fused_element UBERON:0004744 ! articular/anguloarticular +relationship: has_fused_element UBERON:0011079 ! angular bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000516 +name: pseudobasal process +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0004752 ! palatoquadrate cartilage +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000518 +name: pseudodentary +namespace: uberon/phenoscape-anatomy +def: "Compound bone of adult Gymnophiona, consisting of dentary, coronoid and mentomeckelian." [AAO:EJS] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004768 ! bone of lower jaw +is_a: UBERON:0008907 ! dermal bone +relationship: has_fused_element UBERON:0004742 ! dentary +relationship: has_fused_element UBERON:0011598 ! coronoid bone +relationship: has_fused_element UBERON:0011770 ! mentomeckelian +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000519 +name: pseudodentary tooth +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0003268 ! tooth of lower jaw +intersection_of: UBERON:0001091 {source="cjm"} ! calcareous tooth +intersection_of: attaches_to UBERON:3000518 {source="cjm"} ! pseudodentary +relationship: attaches_to UBERON:3000518 ! pseudodentary +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000521 +name: pterygoid +namespace: uberon/phenoscape-anatomy +def: "Palatal bones of intramembranous origin that lie anterior to the otic capsules, lateral to the orbits, and medial to the maxillae." [AAO:LAP] +synonym: "pterygoidien" RELATED [UBERON:3000521] +is_obsolete: true +replaced_by: UBERON:0010389 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000523 +name: pterygoid process of palatoquadrate +namespace: uberon/phenoscape-anatomy +def: "Process that extends anteriorly from the anterolateral margin of the palatoquadrate and articulates or synchondrotically fuses to the posterior end of the posterior maxillary process." [AAO:LAP] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0004752 ! palatoquadrate cartilage +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000524 +name: pterygoquadrate +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0003108 ! suspensorium +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000527 +name: quadrate process of palatoquadrate +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0004752 ! palatoquadrate cartilage +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000538 +name: recessus fenestrae ovalis +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:3000428 ! perilymphatic system +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000539 +name: recessus marsupiatus of premaxilla +namespace: uberon/phenoscape-anatomy +def: "Is a recess on the surface of the premaxilla near to the base of the pars facialis." [] +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0002244 ! premaxilla +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000540 +name: recessus vaginiformis +namespace: uberon/phenoscape-anatomy +def: "Is a space on the interior surface of the pars facialis of the maxilla" [] +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0002397 ! maxilla +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000543 +name: retroarticular process +namespace: uberon/phenoscape-anatomy +def: "Bony process that is part of the articular and is the point of insertion of the m. interhuoideus posterior." [AAO:LAP] +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:3000515 ! pseudoangular +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000547 +name: rostral process +namespace: uberon/phenoscape-anatomy +def: "Is a process of the nasal bone directed anteriorly towards the rostrum." [] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001681 ! nasal bone +relationship: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0001709 ! upper jaw region +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000560 +name: septum semicircularium anterior +namespace: uberon/phenoscape-anatomy +def: "The anterior connective tissue partition between walls of otic capsule around which the membranous semicircular canals pass." [] +is_a: UBERON:0003037 ! septum +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001846 ! internal ear +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000561 +name: septum semicircularium laterale +namespace: uberon/phenoscape-anatomy +def: "The lateral connective tissue partition between walls of otic capsule around which the membranous semicircular canals pass." [] +is_a: UBERON:0003037 ! septum +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001846 ! internal ear +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000562 +name: septum semircularium posterior +namespace: uberon/phenoscape-anatomy +def: "The posterior connective tissue partition between walls of otic capsule around which the membranous semicircular canals pass." [] +is_a: UBERON:0003037 ! septum +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001846 ! internal ear +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000563 +name: seydels palatal process +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:3000068 ! cartilago ectochoanalis +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000565 +name: skeletal support for eminentia olfactoria +namespace: uberon/phenoscape-anatomy +def: "Elevation of the dorsal surface of the solum nasi medial to the fenestra endochoanalis that provides support for the eminentia olfactoria." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000569 +name: solum nasi +namespace: uberon/phenoscape-anatomy +def: "Unpaired, horizontal plate that forms the floor of the nasal capsule." [AAO:LAP] +synonym: "nasal floor" RELATED [UBERON:3000569] +synonym: "planum basale" RELATED [UBERON:3000569] +synonym: "solum nasale" RELATED [UBERON:3000569] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000570 +name: spatium sacculare +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:3000428 ! perilymphatic system +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000571 +name: specialized connective tissue +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0002384 ! connective tissue +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000572 +name: sphenethmoid +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone that forms the anterior portion of the braincase and forms from one ossification center on each side of the orbital cartilage." [AAO:LAP] +synonym: "orbitosphenoid" RELATED [UBERON:3000572] +synonym: "orbitotemporal" RELATED [UBERON:3000572] +synonym: "Os sphenethmoidale" RELATED [UBERON:3000572] +is_a: UBERON:0002513 ! endochondral bone +relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000580 +name: stylus of pars media plectri +namespace: uberon/phenoscape-anatomy +synonym: "columella" RELATED [UBERON:3000580] +synonym: "columella auris" RELATED [UBERON:3000580] +synonym: "columellare" RELATED [UBERON:3000580] +synonym: "interstapediale" RELATED [UBERON:3000580] +synonym: "mediostapediale" RELATED [UBERON:3000580] +synonym: "mesostapediale" RELATED [UBERON:3000580] +synonym: "os columellare" RELATED [UBERON:3000580] +synonym: "os intermedium" RELATED [UBERON:3000580] +synonym: "stapes" RELATED [UBERON:3000580] +synonym: "stelidium" RELATED [UBERON:3000580] +synonym: "stilus columellare" RELATED [UBERON:3000580] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:3000408 ! pars media plectri +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000581 +name: sulcus dentalis of maxilla +namespace: uberon/phenoscape-anatomy +def: "Groove located between the pars dentalis and the bases of the maxillary teeth." [AAO:LAP] +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0002397 ! maxilla +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000582 +name: sulcus dentalis of premaxilla +namespace: uberon/phenoscape-anatomy +def: "Groove located between the pars dentalis and the bases of the premaxillary teeth." [] +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0002244 ! premaxilla +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000583 +name: sulcus for Meckels cartilage +namespace: uberon/phenoscape-anatomy +def: "A groove on the palatoquadrate that is occupied by the Meckel's cartilage." [] +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:3000012 ! angulosplenial coronoid process +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000586 +name: superior prenasal cartilage +namespace: uberon/phenoscape-anatomy +def: "Paired, elongate cartilages that extend anteroventrally to abut the dorsomedial margin of the posterior face of the alary process of the premaxilla. The function of these cartilages is to transmit the movement of the premaxilla to the alary cartilages during the closure of the apertura nasalis externa." [AAO:LAP] +is_a: UBERON:0001823 ! nasal cartilage +is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000587 +name: obsolete supraangular +namespace: uberon/phenoscape-anatomy +def: "The suprangular or surangular is a jaw bone found in most land vertebrates, except mammals. It's usually in the back of the jaw, on the upper edge, and is connected to all other jaw bones: dentary, angular, splenial and articular. It is often a muscle attachment site." [] +is_obsolete: true +replaced_by: UBERON:0011636 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000588 +name: obsolete supraoccipital +namespace: uberon/phenoscape-anatomy +alt_id: UBERON:3010834 +def: "Median, unpaired bone that can form the dorsal margin of the foramen magnum." [AAO:curator] +is_obsolete: true +replaced_by: UBERON:0004747 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000590 +name: supraorbital flange +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0011639 ! frontoparietal bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000591 +name: suprasphenoid +namespace: uberon/phenoscape-anatomy +def: "Endochondral ossification of the dorsomedial portion of the braincase." [AAO:LAP] +is_a: UBERON:0002513 ! endochondral bone +relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000597 +name: symphysis maxillaris +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0001709 ! upper jaw region +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000599 +name: taenia tecti marginalis +namespace: uberon/phenoscape-anatomy +def: "Cartilaginous connection between the orbital cartilage and otic capsules." [] +is_a: UBERON:0003932 ! cartilage element of chondrocranium +relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000601 +name: tectum nasi +namespace: uberon/phenoscape-anatomy +def: "Roof of the nasal capsule, confluent with lamina orbitonasalis posteriorly and united to septum nasi." [AAO:LAP] +synonym: "tectum nasale" RELATED [UBERON:3000601] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000605 +name: tentacular foramen +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0011773 ! upper jaw opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000610 +name: trochlear foramen +namespace: uberon/phenoscape-anatomy +synonym: "nerve foramen IV" EXACT [] +is_a: UBERON:3000051 ! braincase and otic capsule opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000619 +name: tympanosquamosal +namespace: uberon/phenoscape-anatomy +def: "Central, funnel-shaped, ossified portion of the tympanic annulus fused to the squamosal bone." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0003108 ! suspensorium +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000628 +name: ventral ramus of squamosal +namespace: uberon/phenoscape-anatomy +def: "Longest of the three squamosal rami; it invests the dorsolateral margin of the palatoquadrate. The distal end of the ventral ramus invests the quadrate and articulates with the quadratojugal." [AAO:LAP] +synonym: "processus posterolateralis" RELATED [UBERON:3000628] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0001695 ! squamous part of temporal bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000634 +name: vomerine canal +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0002396 ! vomer +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000639 +name: zygomatic ramus of squamosal +namespace: uberon/phenoscape-anatomy +def: "Ramus (process) that projects anteriorly from the dorsal body of the squamosal and forms part of the posterior margin of the orbit." [AAO:LAP] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:3000254 ! lamella alaris +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000640 +name: arcus praeoccipitalis +namespace: uberon/phenoscape-anatomy +def: "Skeletal structure that separates the inferior and superior perilymphatic foramina." [AAO:LAP] +is_a: UBERON:0003933 ! cranial cartilage +relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000642 +name: maxillopalatine tooth +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0003267 ! tooth of upper jaw +intersection_of: UBERON:0001091 {source="cjm"} ! calcareous tooth +intersection_of: attaches_to UBERON:3000288 {source="cjm"} ! maxillopalatine +relationship: attaches_to UBERON:3000288 ! maxillopalatine +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000644 +name: processus lingularis of nasal skeleton +namespace: uberon/phenoscape-anatomy +def: "Rod-shaped process that extends caudally from the inferior edge of the planum terminale." [AAO:LAP] +synonym: "lingular process" RELATED [UBERON:3000644] +synonym: "processus lingularis" BROAD [] +is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000645 +name: corpus +namespace: uberon/phenoscape-anatomy +alt_id: UBERON:3010459 +def: "Basal part of the septomaxilla." [AAO:LAP] +synonym: "centrum" RELATED [UBERON:3000645] +synonym: "pars horizontalis" RELATED [UBERON:3000645] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0012360 ! bone of jaw +relationship: part_of UBERON:0011167 ! septomaxilla bone +relationship: part_of UBERON:3000998 ! suprarostral cartilage +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000646 +name: margo libera +namespace: uberon/phenoscape-anatomy +def: "Anterior, rounded portion of the corpus of the septomaxilla." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:3000645 ! corpus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000647 +name: crista interna +namespace: uberon/phenoscape-anatomy +def: "Sharp ridge that extends medially from the basal part of the processus infrafenestralis; it separates the diverticulum proncipale from the diverticulum medium." [AAO:LAP] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:3000492 ! processus infrafenestralis +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000648 +name: crista praeopercularis +namespace: uberon/phenoscape-anatomy +def: "Synchondrotic or synostotic connection between the footplate of the pars media plectri and the ventral margin of the fenestra ovalis." [AAO:LAP] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:3000408 ! pars media plectri +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000649 +name: anterior process of vomer +namespace: uberon/phenoscape-anatomy +def: "Process that extends anterolaterally toward the maxilla-premaxilla articulation." [AAO:LAP] +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0002396 ! vomer +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000650 +name: processus frontalis of maxilla +namespace: uberon/phenoscape-anatomy +def: "Anterio portion of the maxilla that may contact the nasal and take part in the formation of a groove for the nasolacrimal duct." [AAO:LAP] +synonym: "processus frontalis" BROAD [] +synonym: "processus praeorbitalis of the pars facialis" RELATED [UBERON:3000650] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002397 ! maxilla +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000651 +name: lamina anterior of maxilla +namespace: uberon/phenoscape-anatomy +def: "Most anterior part of the maxilla, which is in contact with the premaxilla." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0002397 ! maxilla +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000652 +name: fossa maxillaris +namespace: uberon/phenoscape-anatomy +def: "Depression lacated on the inner surface of the maxilla between the palatine process and the pars palatina." [AAO:LAP] +comment: Alternative more fish orientated definition.\n\n A fossa that is a depression in the proximal end of the maxilla involved in articulation with the palatine. [Baldwin, CC and Johnson GD. 1996. Interrelationships of Aulopiformes. Pages 355-404 in MLJ Stiassny, LR Parenti, and DG Johnson, (eds.), Interrelationships of fishes. Academic Press, San Diego, CA.] +synonym: "maxillary saddle" EXACT [] +is_a: UBERON:0004704 ! bone fossa +relationship: part_of UBERON:0002397 ! maxilla +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000653 +name: pars glenoidalis of quadratojugal +namespace: uberon/phenoscape-anatomy +def: "Portion of the quadratojugal that makes contact dorsally with the distal portion of the squamosal." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0011267 ! quadratojugal bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000654 +name: pars jugalis +namespace: uberon/phenoscape-anatomy +def: "Anterior part of the quadratojugal that is in contact with the processus posterior of the maxilla." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0011267 ! quadratojugal bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000655 +name: processus dorsalis of lamella alaris +namespace: uberon/phenoscape-anatomy +def: "Dorsal process of the lamella alaris located at the anterior end of the margo orbitalis; a narrow ligament that runs from the frontoparietal is attached to it." [AAO:LAP] +synonym: "processus dorsailis" BROAD [] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:3000254 ! lamella alaris +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000656 +name: processus posterodorsalis of lamella alaris +namespace: uberon/phenoscape-anatomy +def: "Posterior process of the lamella alaris." [AAO:LAP] +synonym: "processus posterodorsalis" BROAD [] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:3000254 ! lamella alaris +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000657 +name: dentigerous process +namespace: uberon/phenoscape-anatomy +def: "Tooth-bearing process of the vomer." [AAO:LAP] +synonym: "torus dentigerous" RELATED [UBERON:3000657] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002396 ! vomer +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000658 +name: prechoanal process +namespace: uberon/phenoscape-anatomy +def: "Process that extends laterally from the anterior process; its bifurcation from the postchoanal process occurs at the level of the dentigerous process." [AAO:LAP] +synonym: "processus choanalis anterior" RELATED [UBERON:3000658] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002396 ! vomer +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000659 +name: postchoanal process +namespace: uberon/phenoscape-anatomy +def: "Process that extends laterally from the anterior process; its bifurcation from the prechoanal process occurs at the level of the dentigerous process." [AAO:LAP] +synonym: "processus choanalis posterior" RELATED [UBERON:3000659] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002396 ! vomer +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000660 +name: margo choanalis +namespace: uberon/phenoscape-anatomy +def: "Margin between the prechoanal and postchoanal process. It bounds the fenestra endochoanalis." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0002396 ! vomer +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000661 +name: crista vomeri +namespace: uberon/phenoscape-anatomy +def: "Ridge on the dorsal surface of the vomer that runs from the anterior to the postchoanal processes of the vomer; it takes part in the fixation of the bone to the lateral margin of the solum nasi." [AAO:LAP] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002396 ! vomer +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000662 +name: processus posterior of parasphenoid +namespace: uberon/phenoscape-anatomy +def: "Posterior projection of the median part of the parsphenoid, which may extend over the posterior margins of the subotic alae." [AAO:LAP] +synonym: "processus posterior" BROAD [] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0004745 ! parasphenoid +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000663 +name: parahyoid +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0010272 ! hyoid apparatus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000664 +name: hyoid plate +namespace: uberon/phenoscape-anatomy +def: "Azygous or paired bone that occurs on the ventral surface of the hyoid plate." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0010272 ! hyoid apparatus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000667 +name: pars reuniens +namespace: uberon/phenoscape-anatomy +def: "Area of fusion of the ceratohyals." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0005884 ! hyoid arch skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000668 +name: hyoglossal sinus +namespace: uberon/phenoscape-anatomy +def: "Is the space along the anterior edge of the hyoid plate between the hyale and through which passes the hyoglossus muscle as it passes dorsally into the tongue." [] +comment: A anuran (frog) term +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:3000664 ! hyoid plate +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000670 +name: anterior process of hyoid apparatus +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0010272 ! hyoid apparatus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000671 +name: anterolateral process of hyoid plate +namespace: uberon/phenoscape-anatomy +def: "Processes that flank the hyales laterally and extend anterolaterally from the anterolateral margin of the hyoid plate. They are formed as a result of new cartilaginous growth lateral to the basibranchial." [AAO:LAP] +synonym: "processus alaris" RELATED [UBERON:3000671] +synonym: "processus anterolateralis" RELATED [UBERON:3000671] +synonym: "processus lateralis anterior" RELATED [UBERON:3000671] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:3000664 ! hyoid plate +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000672 +name: posterolateral process +namespace: uberon/phenoscape-anatomy +def: "Paired processes that extend posterolaterally from the posterolateral margin of the hyoid plate. These processes are formed as a result of new cartilaginous growth lateral to the basibranchial and hypobranchial plate." [AAO:LAP] +is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:3000664 ! hyoid plate +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000673 +name: posteromedial process +namespace: uberon/phenoscape-anatomy +def: "Cartilaginous, paired processes that extend posterolaterally from the posterior margin of the hyoid plate. These processes invest the laryngeal apparatus and are ossified in the adult." [AAO:LAP] +synonym: "cornua posteriores" RELATED [UBERON:3000673] +synonym: "hyoid" RELATED [UBERON:3000673] +is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:3000664 ! hyoid plate +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000676 +name: bronchial process +namespace: uberon/phenoscape-anatomy +def: "Paired processes that extend posteroventrally from the anterolateral margins of the cricoid ring." [AAO:LAP] +synonym: "processus trachealis" RELATED [UBERON:3000676] +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002375 ! cricoid cartilage +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000677 +name: lateral process of cricoid cartilage +namespace: uberon/phenoscape-anatomy +synonym: "lateral process" BROAD [] +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002375 ! cricoid cartilage +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000678 +name: esophageal process +namespace: uberon/phenoscape-anatomy +def: "Median process located on the posterior end of the cricoid cartilage." [AAO:LAP] +synonym: "spina oesophagea" RELATED [UBERON:3000678] +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002375 ! cricoid cartilage +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000680 +name: manubrium of hyale +namespace: uberon/phenoscape-anatomy +def: "Proximal section of the hyale." [AAO:LAP] +synonym: "processus anteriores" RELATED [UBERON:3000680] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:3000101 ! hyale +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000681 +name: hyoid apparatus opening +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0010272 ! hyoid apparatus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000683 +name: sinus nervi hypoglossi +namespace: uberon/phenoscape-anatomy +def: "Depression that houses the hypoglossus nerve and is located between the anterolateral process and the proximal part of the hyale." [AAO:Rocek_2003] +is_a: UBERON:3000681 ! hyoid apparatus opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000685 +name: foramen nervi hypoglossi +namespace: uberon/phenoscape-anatomy +def: "Foramen that houses the hypoglossus nerve and is located between the anterolateral process and the proximal part of the hyale." [AAO:Rocek_2003] +synonym: "foramen laterale" RELATED [UBERON:3000685] +is_a: UBERON:3000681 ! hyoid apparatus opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000687 +name: processus confluens +namespace: uberon/phenoscape-anatomy +def: "Strip of cartilage that forms the lateral margin of the foramen nervi hypoglossi." [AAO:LAP] +synonym: "processus alaris" RELATED [UBERON:3000687] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:3000101 ! hyale +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000688 +name: prominentia apicalis dorsalis +namespace: uberon/phenoscape-anatomy +def: "Anterior end of the arytenoid cartilage." [AAO:LAP] +synonym: "prominentia apicalis anterior" RELATED [UBERON:3000688] +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011769 ! cartilaginous projection +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001740 ! arytenoid cartilage +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000689 +name: prominentia apicalis ventralis +namespace: uberon/phenoscape-anatomy +def: "Posterior (cardiac) end of the arytenoid cartilage." [AAO:LAP] +synonym: "prominentia apicalis posterior" RELATED [UBERON:3000689] +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011769 ! cartilaginous projection +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001740 ! arytenoid cartilage +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000692 +name: pedicel +namespace: uberon/phenoscape-anatomy +def: "Paired stalks located dorsolateral to the vertebral centrum that provide support to the lateral margins of the neural arch laminae." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0002412 ! vertebra +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000694 +name: atlantal cotyle +namespace: uberon/phenoscape-anatomy +def: "Anterior, single or paired concave facets for articulation with the condyle(s) of the urostyle." [AAO:Francis_1934] +synonym: "cavitas glenoidalis" RELATED [UBERON:3000694] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0001092 ! vertebral bone 1 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000696 +name: posterior intervertebral notch +namespace: uberon/phenoscape-anatomy +def: "Indentation on the anterior margin of the pedicel. When two vertebrae articulate, the anterior notch of one vertebra and the posterior notch of the other create a bilateral intervertebral space." [AAO:LAP] +is_a: UBERON:0010276 ! space in vertebral column +relationship: part_of UBERON:0002412 ! vertebra +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000701 +name: intervertebral space +namespace: uberon/phenoscape-anatomy +def: "Space formed by the anterior and posterior intervertebral notches. The intervertebral spaces accommodate the spinal nerves as they emerge from the spinal canal." [AAO:LAP] +synonym: "intervertebral space" RELATED [UBERON:3000701] +is_a: UBERON:0010276 ! space in vertebral column +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000704 +name: anterior intervertebral notch +namespace: uberon/phenoscape-anatomy +def: "Indentation on the posterior margin of the pedicel. When two vertebrae articulate, the anterior notch of one vertebra and the posterior notch of the other create a bilateral intervertebral space." [AAO:LAP] +is_a: UBERON:0010276 ! space in vertebral column +relationship: part_of UBERON:0002412 ! vertebra +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000707 +name: pleurapophysis +namespace: uberon/phenoscape-anatomy +def: "Paired processes that represent the rib attachments to the vertebra plus the ribs." [AAO:Duellman_and_Trueb_1994] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0002412 ! vertebra +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000711 +name: procoelous +namespace: uberon/phenoscape-anatomy +def: "Holochordal vertebral centra that are concave anteriorly and convex posteriorly; they bear a condyle on the posterior end for the articulation with the posterior adjacent vertebral centrum, forming a ball-and-socket joint that allows extensive motion in most directions." [AAO:Pugener_2002, AAO:Trueb_1973] +is_a: UBERON:0001075 ! bony vertebral centrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000712 +name: opisthocoelous +namespace: uberon/phenoscape-anatomy +def: "Ectochordal or stegochordal vertebral centra that are convex anteriorly and concave posteriorly; they bear a condyle on the anterior end for the articulation with the posterior adjacent vertebral centrum, forming a ball-and-socket joint that allows extensive motion in most directions." [AAO:Pugener_2002, AAO:Trueb_1973] +is_a: UBERON:0001075 ! bony vertebral centrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000713 +name: epichordal +namespace: uberon/phenoscape-anatomy +def: "Vertebral centrum that originates from ossification of the dorsal portion of the perichordal tube; the resulting element tends to be depressed in cross section." [AAO:Kluge_and_Farris_1969] +is_a: UBERON:0001075 ! bony vertebral centrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000714 +name: perichordal +namespace: uberon/phenoscape-anatomy +def: "Vertebral centrum that originates from ossification of the entire perichordal tube; the resulting element is cylindrical in cross section and may have an open (notochord retained) or solid center." [AAO:Kluge_and_Farris_1969] +is_a: UBERON:0001075 ! bony vertebral centrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000715 +name: heterocoelous +namespace: uberon/phenoscape-anatomy +def: "Vertebral centrum that bears saddle-shaped articular surfaces at both ends, having a convexity in the right-left axis and a concavity in the dorsoventral axis. This morphology allows great lateral and vertical flexion." [AAO:LAP] +is_a: UBERON:0001075 ! bony vertebral centrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000716 +name: acoelous +namespace: uberon/phenoscape-anatomy +def: "Vertebral centrum with flat ends. Between successive vertebrae there is a fibrocartilaginous intervertebral body with a gel-like core, the nucleus pulposus, which is derived from the embryonic notochord. Acoelous vertebrae seem especially suited to receive and distribute compressive forces within the vertebral column." [AAO:LAP] +synonym: "amphiplatyan" BROAD [] +is_a: UBERON:0001075 ! bony vertebral centrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000717 +name: amphicoelous +namespace: uberon/phenoscape-anatomy +def: "Ectochordal, biconcave or terminally flat vertebral centrum. This design seems to allow limited motion in most directions. An intervertebral body (which may or may not be independent from the adjacent centra) fills the cavity between successive centra. The intervertebral body usually is formed by soft material that may be derived, at least in part, from the embryonic notochord." [AAO:Pugener_2002, AAO:Trueb_1973] +comment: The tuatara spine is made up of hourglass-shaped amphicoelous vertebrae, concave both before and behind. This is the usual condition of fish vertebrae and some amphibians, but is unique to tuatara within the amniotes[Wikipedia]. +is_a: UBERON:0001075 ! bony vertebral centrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000718 +name: ectochordal +namespace: uberon/phenoscape-anatomy +def: "Spool-shaped vertebral centrum with an open center in which the notochord lies." [AAO:Griffiths_1959] +is_a: UBERON:0001075 ! bony vertebral centrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000719 +name: holochordal +namespace: uberon/phenoscape-anatomy +def: "Spool-shaped vertebral centrum with a solid center. All traces of the notochord dissapear." [AAO:Griffiths_1959] +is_a: UBERON:0001075 ! bony vertebral centrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000720 +name: stegochordal +namespace: uberon/phenoscape-anatomy +def: "Vertebral centrum that is depressed dorsoventrally and solid. All traces of the notochord dissapear." [AAO:Griffiths_1959] +is_a: UBERON:0001075 ! bony vertebral centrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000727 +name: haemal arch lamina +namespace: uberon/phenoscape-anatomy +def: "Paired plates that form the haemal arch. The lateral margin of each lamina is firmly attached to the ventral surface of the caudal vertebral centrum and the medial end fuses to the medial end of the opposite lamina." [AAO:Pugener_2002] +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0006065 ! hemal arch +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000728 +name: nucal keel +namespace: uberon/phenoscape-anatomy +def: "Longitudinal process found in all cervical vertebrae, except the atlas, for the attachment of dorsal head musculature." [AAO:Duellman_and_Trueb_1994] +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001092 ! vertebral bone 1 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000730 +name: foramen nutritium +namespace: uberon/phenoscape-anatomy +def: "Opening on the lateral side of the vertebra for the passage of blood vessels." [AAO:LAP] +is_a: UBERON:0010276 ! space in vertebral column +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000735 +name: mid-dorsal keel +namespace: uberon/phenoscape-anatomy +def: "Ridge-shaped structure present on the dorsomedial surface of the neural arch lamina; this structure is produced at the point of junction of the contralateral sides of each neural arch." [AAO:Pugener_2002] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0003861 ! neural arch +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000736 +name: obsolete deltopectoral crest +namespace: uberon/phenoscape-anatomy +def: "Ridge on the ventral aspect of the humeral shaft. It serves for the attachment of the mm pectoralis and shoulder musculature used primarily for limb adduction." [AAO:LAP] +synonym: "crista ventralis" EXACT [] +synonym: "crista ventralis humeri" EXACT [UBERON:3000736] +synonym: "deltoid crest" RELATED [UBERON:3000736] +is_obsolete: true +replaced_by: UBERON:0002498 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000743 +name: sacral condyle +namespace: uberon/phenoscape-anatomy +def: "Anterior, paired convex facets for articulation with the cotyle(s) of the urostyle." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0003690 ! fused sacrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000744 +name: urostyle cotyle +namespace: uberon/phenoscape-anatomy +def: "Anterior, single or paired concave facets for articulation with the sacral condyle(s)." [AAO:LAP] +synonym: "fossa condyloidea ossis coccygei" RELATED [UBERON:3000744] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0003106 ! urostyle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000745 +name: webbing of bone in vertebral column +namespace: uberon/phenoscape-anatomy +def: "In anurans, pair of bony plates that connect the posteromedial margins of the sacral diapophyses with the lateral margins of the anterior portion of the urostyle." [AAO:Pugener_and_Maglia_2008] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0001130 ! vertebral column +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000746 +name: urostyle ridge +namespace: uberon/phenoscape-anatomy +def: "Longitudinal crest on the dorsal side of the urostyle formed by the caudal neural arches." [AAO:Maglia_et_al_2007] +synonym: "crista ossi coccygei" RELATED [UBERON:3000746] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0003106 ! urostyle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000748 +name: suprascapula +namespace: uberon/phenoscape-anatomy +def: "Paired, cartilaginous elements located in the dorsolateral shoulder region. Each suprascapula is a flat broad blade that extends medially." [AAO:LAP] +synonym: "adscapulum" RELATED [UBERON:3000748] +synonym: "episcapulum" RELATED [UBERON:3000748] +synonym: "omolita" RELATED [UBERON:3000748] +synonym: "scapula major" RELATED [UBERON:3000748] +is_a: UBERON:0007844 ! cartilage element +relationship: part_of UBERON:0006849 ! scapula +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000752 +name: pars acromialis +namespace: uberon/phenoscape-anatomy +def: "Prominent structure (anteromedial head) that forms the anterior section of the ventral margin of the scapula." [AAO:LAP] +is_a: UBERON:0000479 ! tissue +relationship: part_of UBERON:0006849 ! scapula +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000753 +name: pars glenoidalis of scapula +namespace: uberon/phenoscape-anatomy +def: "Concave structure (posteromedial head) that forms the posterior head of the ventral margin of the scapula. The pars glenoidalis articulates with the humerus, and comprises the dorsal portion of the glenoid fossa." [AAO:LAP] +synonym: "glenoid head of scapula" EXACT [] +is_a: UBERON:0000479 ! tissue +relationship: part_of UBERON:0006849 ! scapula +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000755 +name: pectoral girdle opening +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0007831 ! pectoral girdle skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000756 +name: crista dorsalis humeri +namespace: uberon/phenoscape-anatomy +def: "Small hooked process on the dorsal aspect of the humeral shaft; it does not extend on to the glenoid head. The m subscapularis is inserted on it." [AAO:LAP] +synonym: "crista dorsalis " RELATED [UBERON:3000756] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0000976 ! humerus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000757 +name: zonal area +namespace: uberon/phenoscape-anatomy +def: "All those parts of the pectoral girdle ventral and medial to the glenoid fossa." [AAO:LAP] +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0007831 ! pectoral girdle skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000759 +name: omosternum +namespace: uberon/phenoscape-anatomy +def: "Proximal portion of the prezonal element of the pectoral girdle. It may be a flat, midventral cartilaginous structure or a calcified or bony element elaborated into a stylum." [AAO:LAP] +synonym: "episternum" RELATED [UBERON:3000759] +synonym: "interclavicle" RELATED [UBERON:3000759] +synonym: "prezonal element" RELATED [UBERON:3000759] +synonym: "prezonal sternum" RELATED [UBERON:3000759] +synonym: "sternum superior" RELATED [UBERON:3000759] +is_a: UBERON:0005181 ! thoracic segment organ +is_a: UBERON:0010363 ! endochondral element +is_a: UBERON:3000936 ! zonal element +relationship: part_of UBERON:0000975 ! sternum +relationship: part_of UBERON:3000937 ! prezonal element +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000762 +name: epicoracoid +namespace: uberon/phenoscape-anatomy +def: "Paired, flat cartilaginous arches that compose the central portion of the zonal area, unites the clavicle and coracoid of each half of the pectoral girdle, and form the medial margins of the pectoral fenestrae." [AAO:LAP] +synonym: "coracoid cartilage" RELATED [UBERON:3000762] +synonym: "corpus sterni" RELATED [UBERON:3000762] +synonym: "entosternal" RELATED [UBERON:3000762] +synonym: "infracoracoid" RELATED [UBERON:3000762] +synonym: "sterni ossa media" RELATED [UBERON:3000762] +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:3000936 ! zonal element +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000763 +name: epicoracoid bridge +namespace: uberon/phenoscape-anatomy +def: "A pair of cartilaginous expansions (one from each epicoracoid cartilage) that project anteriorly. They articulate anteriorly with the omosternum." [AAO:LAP] +synonym: "procoracoid bridge" RELATED [UBERON:3000763] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:3000762 ! epicoracoid +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000767 +name: pelvic girdle opening +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0007832 ! pelvic girdle skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000771 +name: acetabular depression +namespace: uberon/phenoscape-anatomy +def: "The central, most concave portion of the acetabulum, which remains open." [AAO:LAP] +is_a: UBERON:3000767 ! pelvic girdle opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000773 +name: ilial ridge +namespace: uberon/phenoscape-anatomy +def: "Longitudinal crest on the dorsal side of the shaft of the ilium." [AAO:LAP] +synonym: "ala ossis ilei" RELATED [UBERON:3000773] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:3000774 ! ilial shaft +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000774 +name: ilial shaft +namespace: uberon/phenoscape-anatomy +def: "Anterior rod that articulates with the sacrum." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0001273 ! ilium +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000775 +name: obsolete ilial corpus +namespace: uberon/phenoscape-anatomy +def: "Posterior body of the ilium that forms the anterior half of the acetabulum." [AAO:LAP] +is_obsolete: true +replaced_by: UBERON:0010747 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000776 +name: glenoid foramen +namespace: uberon/phenoscape-anatomy +def: "Opening on the glenoid fossa." [AAO:LAP] +is_a: UBERON:3000755 ! pectoral girdle opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000777 +name: epicoracoid horn +namespace: uberon/phenoscape-anatomy +def: "A pair of cartilaginous expansions (one from each epicoracoid cartilage) that project posteriorly. They articulate with the sternum by means of grooves, pouches or fossae in the dorsal surface of the sternum and provide a site for the insertion of a pair of muscles derived from the m. rectus abdominis." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:3000762 ! epicoracoid +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000778 +name: supracoracoid foramen +namespace: uberon/phenoscape-anatomy +def: "Opening on the scapulocoracoid bone through which passes the n. supracoracoideus and the corresponding artery and vein." [AAO:LAP] +synonym: "foramen supracoracoideum" RELATED [UBERON:3000778] +is_a: UBERON:3000755 ! pectoral girdle opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000779 +name: pectoral fenestra +namespace: uberon/phenoscape-anatomy +def: "Ovoid space on the pectoral girdle limited anteriorly by the procoracoid, medially by the epicoracoid, and posteriorly by the coracoid." [AAO:LAP] +synonym: "fenestra between procoracoid and coracoid" RELATED [UBERON:3000779] +is_a: UBERON:3000755 ! pectoral girdle opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000780 +name: incisura coracoidea +namespace: uberon/phenoscape-anatomy +def: "Notch that separates the cartilaginous regions of the procoracoid and coracoid." [AAO:LAP] +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0006849 ! scapula +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000783 +name: fovea capitis of humerus +namespace: uberon/phenoscape-anatomy +def: "Ovoid roughened pit, which is situated a little below and behind the center of the head, and serves as a site of attachment for ligaments." [AAO:LAP] +comment: Not to be confused with the fovea capitis of the femur +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +relationship: part_of UBERON:0006801 ! proximal head of humerus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000784 +name: ulnar condyle +namespace: uberon/phenoscape-anatomy +def: "Semi-elliptical ball located at the lower end of the humerus, adjacent to the humeral ball." [AAO:LAP] +synonym: "medial condyle" RELATED [UBERON:3000784] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0000976 ! humerus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000785 +name: trochlear groove of humerus +namespace: uberon/phenoscape-anatomy +def: "Furrow between the humeral head and the ulnar condyle." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0000976 ! humerus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000786 +name: fossa cubitalis ventralis +namespace: uberon/phenoscape-anatomy +def: "Depresion on the distal end of the humerus, just anterior to the humeral head, in which the end of the radius fits when the forelimb is flexed." [AAO:LAP] +is_a: UBERON:0004704 ! bone fossa +relationship: part_of UBERON:0000976 ! humerus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000787 +name: collum antibrachii +namespace: uberon/phenoscape-anatomy +def: "In a fused radio-ulna, the proximal portion of the compound bone (where the sulcus longitudinalis is barely evident or absent) is a cylindrical pillar." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0006715 ! radio-ulna +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000792 +name: anterior ramus of cleithrum +namespace: uberon/phenoscape-anatomy +def: "Subdivision of the cleithrum that extends along the anterior edge of the suprascapula." [AAO:LAP] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004741 ! cleithrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000793 +name: anomocoelous +namespace: uberon/phenoscape-anatomy +def: "Stegochordal slightly biconcave or flat terminally vertebral centrum. Each intervertebral cartilage is subdivided anteriorly and posteriorly, producing a free intervertebral element between adjacent vertebrae. This element subsequently ossifies and remains free." [AAO:Trueb_1973] +is_a: UBERON:0001075 ! bony vertebral centrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000794 +name: displasiocoelous +namespace: uberon/phenoscape-anatomy +def: "Vertebral column in which the first seven vertebrae have holochordal centra and the intervertebral cartilages are posteriorly subdivided in the procoelous manner. The eighth presacral vertebra has a holochordal centrum and the intervertebral cartilage is subdivided in the opisthocoelous manner. Thus, the first seven presacral vertebrae are concave anteriorly and convex posteriorly, whereas the eighth is biconcave." [AAO:Trueb_1973] +is_a: UBERON:0001075 ! bony vertebral centrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000796 +name: imbricate neural arch +namespace: uberon/phenoscape-anatomy +def: "Overlapping neural arches that obscure the spinal cord dorsally." [AAO:Trueb_1973] +is_a: UBERON:0003861 ! neural arch +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000797 +name: non-imbricate neural arch +namespace: uberon/phenoscape-anatomy +def: "Neural arches that do not overlap, thus exposing the spinal cord dorsally." [AAO:Trueb_1973] +is_a: UBERON:0003861 ! neural arch +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000798 +name: presacral shield +namespace: uberon/phenoscape-anatomy +def: "Dorsal, dermal plate of bone that overlies the presacral vertebrae. Such shield usually has irregular, sculptured surfaces, frequently is broadly expanded, and may be composed of several separate plates." [AAO:Trueb_1973] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0009568 ! trunk region of vertebral column +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000799 +name: cartilago paraglenoidalis +namespace: uberon/phenoscape-anatomy +def: "Strip of cartilage that separates the coracoid from the scapula." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0006849 ! scapula +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000800 +name: intercotylar space +namespace: uberon/phenoscape-anatomy +def: "Space between the atlantal cotyles." [AAO:LAP] +synonym: "spatium interglenoidale" RELATED [UBERON:3000800] +is_a: UBERON:0010276 ! space in vertebral column +relationship: part_of UBERON:0001092 ! vertebral bone 1 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000801 +name: caput glenoidale +namespace: uberon/phenoscape-anatomy +def: "Convex articular facet of the vertebral centrum for the articulation with the adjacent centrum." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0001075 ! bony vertebral centrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000802 +name: fossa glenoidalis +namespace: uberon/phenoscape-anatomy +def: "Concave articular facet of the vertebral centrum for the articulation with the adjacent centrum." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0001075 ! bony vertebral centrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000803 +name: sulcus articularis lateralis +namespace: uberon/phenoscape-anatomy +def: "In a zygapophysis that has ridges and sulci, the lateral canal between the carina distalis and the carina medialis." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0006062 ! zygapophysis +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000804 +name: sulcus articularis medialis +namespace: uberon/phenoscape-anatomy +def: "In a zygapophysis that has ridges and sulci, the medial canal between the carina medialis and the carina proximalis." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0006062 ! zygapophysis +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000805 +name: carina proximalis +namespace: uberon/phenoscape-anatomy +def: "In a zygapophysis that has ridges and sulci, the proximal ridge." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0006062 ! zygapophysis +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000806 +name: carina medialis +namespace: uberon/phenoscape-anatomy +def: "In a zygapophysis that has ridges and sulci, the medial ridge." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0006062 ! zygapophysis +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000807 +name: carina distalis +namespace: uberon/phenoscape-anatomy +def: "In a zygapophysis that has ridges and sulci, the distal ridge." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0006062 ! zygapophysis +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000808 +name: parasagittal processes +namespace: uberon/phenoscape-anatomy +def: "Paired, posteriorly directed process at the posterior margin of each neural arch lamina." [AAO:Cannatella_1985] +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0003861 ! neural arch +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000809 +name: accessory articulation +namespace: uberon/phenoscape-anatomy +def: "Paired, additional vertebral articulations located medial to the intervertebral space, adjacent to the vertebral centrum." [AAO:Cannatella_1985] +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0002412 ! vertebra +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000810 +name: fissura sagittalis +namespace: uberon/phenoscape-anatomy +def: "Medial groove in the longitudinal ridge of the urostyle formed by the incomplete dorsal fusion of the caudal neural arches." [AAO:Maglia_et_al_2007] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:3000746 ! urostyle ridge +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000811 +name: glenoid end of clavicle +namespace: uberon/phenoscape-anatomy +def: "Lateral end of the clavicle, which usually lies in close proximity to the pars acromialis of the scapula, and occassionally may fuse to it." [AAO:LAP] +synonym: "extremitas glenoidalis" RELATED [UBERON:3000811] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001105 ! clavicle bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000813 +name: sulcus pro cartilagine praecoracoidealis +namespace: uberon/phenoscape-anatomy +def: "Canal on the posterior aspect of the clavicle that accomodates the anterior margin of the procoracoid cartilage." [AAO:LAP] +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0001105 ! clavicle bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000814 +name: glenoid head of coracoid +namespace: uberon/phenoscape-anatomy +def: "Lateral end of the coracoid, which forms the medial portion of the glenoid fossa." [AAO:LAP] +synonym: "intumescentia glenoidalis" RELATED [UBERON:3000814] +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0004743 ! coracoid bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000815 +name: sternal head of coracoid +namespace: uberon/phenoscape-anatomy +def: "Medial end of the coracoid, which is synchondrotically fused to the epicoracoid cartilage." [AAO:LAP] +synonym: "pars epicoracoidealis" RELATED [UBERON:3000815] +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0004743 ! coracoid bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000816 +name: margo fenestralis +namespace: uberon/phenoscape-anatomy +def: "Anterior margin of the coracoid, which forms the posterior edge of the pectoral fenestra." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0004743 ! coracoid bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000817 +name: margo posterior +namespace: uberon/phenoscape-anatomy +def: "Posterior margin of the coracoid." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0004743 ! coracoid bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000818 +name: margo anterior of scapula +namespace: uberon/phenoscape-anatomy +def: "Anterior margin of the scapula." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0006849 ! scapula +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000819 +name: margo clavicularis +namespace: uberon/phenoscape-anatomy +def: "Inferior margin of the pars acromialis of the scapula, which articulates with the clavicule." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0006849 ! scapula +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000820 +name: margo posterior of scapula +namespace: uberon/phenoscape-anatomy +def: "Posterior margin of the scapula." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0006849 ! scapula +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000821 +name: margo suprascapularis +namespace: uberon/phenoscape-anatomy +def: "Superior margin of the scapula, which articulates with the suprascapula." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0006849 ! scapula +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000822 +name: pars suprascapularis +namespace: uberon/phenoscape-anatomy +def: "Superior portion of the scapula, which is thinner than the rest of the shaft." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0006849 ! scapula +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000823 +name: sinus interglenoidalis +namespace: uberon/phenoscape-anatomy +def: "Notch or indentation between the pars glenoidalis and pars acromialis of the scapula." [AAO:LAP] +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0006849 ! scapula +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000824 +name: tenuitas cristaeformis +namespace: uberon/phenoscape-anatomy +def: "Leading (anterior) portion of the scapula, which is thinner than the rest of the shaft." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0006849 ! scapula +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000825 +name: crista longitudinalis scapula +namespace: uberon/phenoscape-anatomy +def: "Longitudinal ridge on the medial (inner) face of the scapula." [AAO:LAP] +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0006849 ! scapula +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000827 +name: margo anterior of cleithrum +namespace: uberon/phenoscape-anatomy +def: "Anterior margin of the anterior ramus of the cleithrum." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004741 ! cleithrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000828 +name: margo posterior of cleithrum +namespace: uberon/phenoscape-anatomy +def: "Posterior margin of the posterior ramus of the cleithrum." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004741 ! cleithrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000829 +name: margo scapularis +namespace: uberon/phenoscape-anatomy +def: "Lateral margin of the suprascapula, which articulates with the scapula." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004741 ! cleithrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000830 +name: margo vertebralis +namespace: uberon/phenoscape-anatomy +def: "Medial margin of the suprascapula, which lies dorsal to the vertebral column." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004741 ! cleithrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000831 +name: spina acromioidea +namespace: uberon/phenoscape-anatomy +def: "Small process of the lamina recurvata that extends laterally toward the scapular-suprascapular articulation." [AAO:LAP] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0004741 ! cleithrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000832 +name: anterior lamina recurvata +namespace: uberon/phenoscape-anatomy +def: "Portion of the anterior ramus of the cleithrum that invest the anterior margin of the suprascapula, extending onto its dorsal surface." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004741 ! cleithrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000833 +name: sinus dorsalis +namespace: uberon/phenoscape-anatomy +def: "Notch or indentation between the anterior and posterior rami of the cleithrum." [AAO:LAP] +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0004741 ! cleithrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000834 +name: posterior lamina recurvata +namespace: uberon/phenoscape-anatomy +def: "Portion of the posterior ramus of the cleithrum that invests the posterior margin of the suprascapula, extending onto its dorsal surface." [AAO:LAP] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004741 ! cleithrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000836 +name: crista lateralis humeri +namespace: uberon/phenoscape-anatomy +def: "Ridge on the lateral aspect of the humeral shaft located just anterior to the radial (lateral) epicondyle." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0000976 ! humerus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000837 +name: crista medialis humeri +namespace: uberon/phenoscape-anatomy +def: "Ridge on the medial aspect of the humeral shaft that extends from the level of the middle portion of the shaft to ulnar (medial) epicondyle." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0000976 ! humerus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000839 +name: crista radii +namespace: uberon/phenoscape-anatomy +def: "Small ridge on the lateral aspect of the radial shaft, located at the level of the collum antibrachii." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001423 ! radius bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000840 +name: capitulum of radius +namespace: uberon/phenoscape-anatomy +def: "Lateral portion of the proximal (upper) articular surface of the radius that consists of an eminence with a rounded apex." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +relationship: part_of UBERON:0001423 ! radius bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000841 +name: obsolete capitulum radii +namespace: uberon/phenoscape-anatomy +def: "Small eminence on the distal articular head of the radius." [AAO:LAP] +is_obsolete: true +replaced_by: UBERON:3000840 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000842 +name: capitulum ulnae +namespace: uberon/phenoscape-anatomy +def: "Small eminence on the distal articular head of the ulna." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +relationship: part_of UBERON:0001424 ! ulna +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000844 +name: sulcus longitudinalis +namespace: uberon/phenoscape-anatomy +def: "In a fused radio-ulna, longitudinal furrow that demarcates the area of fusion of both elements. This sulcus is deep in the distal portion of the compound bone, but barely evident or absent at the proximal end." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0006715 ! radio-ulna +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000846 +name: element Y of fore mesopodium +namespace: uberon/phenoscape-anatomy +def: "Oval carpal element that is located on the anteromedial side of the radiale and the anterolateral side of the ulnare. Anteriorly, it articulates with carpals 1 through 4 (or 2 through 5 according to some authors). It is also recognized as centrale by some authors. This element originates from one, two, or three condensation centers. Occasionally it may fuse to carpal 2(1), carpal 3(2), the ulnare, or other elements." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0009880 ! carpal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000856 +name: intercalary element of fore digit +namespace: uberon/phenoscape-anatomy +def: "Small elements present in all digits of the manus, when present in a taxon. Each intercalary element articulates with the anteroventral end of the penultimate phalanx proximally and the distal phalanx distally." [AAO:LAP] +is_a: UBERON:0004249 ! manual digit bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000859 +name: foramen perforans carpi +namespace: uberon/phenoscape-anatomy +def: "Opening for the passage of the perforans carpi artery from the ventral to the dorsal side. It perforates the compound ulnare + intermedium." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005744 ! bone foramen +relationship: part_of UBERON:3000856 ! intercalary element of fore digit +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000862 +name: pubo-ischium +namespace: uberon/phenoscape-anatomy +def: "Composite element formed by the fusion of the ischium and pubis." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005179 ! pelvic region element +is_a: UBERON:0010363 ! endochondral element +relationship: has_fused_element UBERON:0001274 ! ischium +relationship: has_fused_element UBERON:0001275 ! pubis +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000865 +name: epileon +namespace: uberon/phenoscape-anatomy +def: "Dorsal extremity of the ilial shaft, which remains cartilaginous." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:3000774 ! ilial shaft +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000866 +name: agger limitans anterior of ilium +namespace: uberon/phenoscape-anatomy +def: "Shelf-like expansion of the ilial corpus that forms the anterior border of the acetabulum." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0006802 ! acetabular rim +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000867 +name: agger limitans anterior of ischium +namespace: uberon/phenoscape-anatomy +def: "Shelf-like expansion of the ischium that forms the posterior border of the acetabulum." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0001274 ! ischium +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000868 +name: obsolete supra-acetabular expansion +namespace: uberon/phenoscape-anatomy +def: "Dorsal portion of the ilial corpus, located above the acetabulum." [AAO:LAP] +synonym: "dorsal acetabular expansion" RELATED [UBERON:3000868] +synonym: "pars ascendens ilei" RELATED [UBERON:3000868] +is_obsolete: true +replaced_by: UBERON:4200125 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000869 +name: ilial protuberance +namespace: uberon/phenoscape-anatomy +def: "Small, dorsolaterally projecting knob located just anterior to the supra-acetabular expansion and about the level of the anterior border of the acetabulum." [AAO:LAP] +synonym: "dorsal protuberance" RELATED [UBERON:3000869] +synonym: "tuber superior" RELATED [UBERON:3000869] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:3000774 ! ilial shaft +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000870 +name: preacetabular expansion +namespace: uberon/phenoscape-anatomy +def: "Ventral portion of the ilial corpus, located anteroventral to the acetabulum." [AAO:LAP] +synonym: "pars descendens ilei" RELATED [UBERON:3000870] +synonym: "ventral acetabular expansion" RELATED [UBERON:3000870] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0010747 ! body of ilium +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000871 +name: fossula tuberis superioris +namespace: uberon/phenoscape-anatomy +def: "Small depression dorsal to the proximal portion of the collum ilei and ventral to the ilial protuberance." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0010747 ! body of ilium +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000872 +name: collum ilei +namespace: uberon/phenoscape-anatomy +def: "Cyllindrical pillar that originates anterior to the acetabulum and extends to the ilial shaft." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0010747 ! body of ilium +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000873 +name: pars cylindriformis ilei +namespace: uberon/phenoscape-anatomy +def: "Elongate, cylindrical structure on the ventral side of the shaft of the ilium that extends through its entire length." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:3000774 ! ilial shaft +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000874 +name: crista ischii +namespace: uberon/phenoscape-anatomy +def: "Crest on the posterior side of the ischium, which may also extend to the posteroventral aspect of pubis." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001274 ! ischium +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000875 +name: spina pelvis posterior +namespace: uberon/phenoscape-anatomy +def: "Small, rounded process on the anterodorsal margin of the ischium, just posterior to the area of articulation with the ilium." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001274 ! ischium +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000876 +name: spina pelvis anterior +namespace: uberon/phenoscape-anatomy +def: "Small, rounded process on the anteroventral margin of the preacetabular expansion of the ilial corpus." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0010747 ! body of ilium +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000877 +name: intumescentia bilateralis inferior +namespace: uberon/phenoscape-anatomy +def: "Small protuberance on the ischium, located close to its posteroventral margin." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0001274 ! ischium +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000878 +name: intumescentia bilateralis superior +namespace: uberon/phenoscape-anatomy +def: "Small protuberance on the ischium, located at the level of the superior margin of the acetabulum and close to its posterior margin." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001274 ! ischium +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000879 +name: incisura terminalis +namespace: uberon/phenoscape-anatomy +def: "Small indentation on the posterior margin of the ischium, ventral to the intumescentia bilateralis superior." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0001274 ! ischium +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000880 +name: crista hypertrophica ischium +namespace: uberon/phenoscape-anatomy +def: "Large protuberance on the dorsal aspect of the ischium that extends from the ischio-ilium articulation to the spina pelvis posterior." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001274 ! ischium +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000882 +name: interilial region +namespace: uberon/phenoscape-anatomy +def: "Area of convergence of the ilial shafts. When the preacetabular ilium is narrow, the interilial configuration is V-shaped or narrowly rounded, whereas when the interilial region is broadly expanded the interilial configuration is U-shaped." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0001273 ! ilium +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000883 +name: recessus coccygealis +namespace: uberon/phenoscape-anatomy +def: "Area dorsal to the pelvic girdle symphysis, between the dorsal portions of the ilial corpora, where lies the posterior terminus of the urostyle." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:3000774 ! ilial shaft +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000884 +name: epipubis +namespace: uberon/phenoscape-anatomy +def: "Small prepubic element formed by a plate of cartilage (which may calcify in the adult) that is synchondrotically united with the pubis." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000885 +name: obsolete Nobelian bone +namespace: uberon/phenoscape-anatomy +def: "Paired cartilaginous rods that lie within the copulatory organ (or so-called tail) and are attached to the posteroventral part of the pelvic girdle." [AAO:LAP] +synonym: "postpubis" RELATED [] +is_obsolete: true +replaced_by: UBERON:3010240 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000886 +name: ypsiloid cartilage +namespace: uberon/phenoscape-anatomy +def: "Y-shaped cartilage lying in the middle line, anterior to the pubo-ischium with which it articulates. It lies dorsal to the rectus abdominis muscle with which it articulates." [AAO:LAP] +synonym: "abdominal sternum" RELATED [UBERON:3000886] +synonym: "cartilago epipubes" RELATED [UBERON:3000886] +synonym: "cartilago marsupial" RELATED [UBERON:3000886] +synonym: "cartilago ypsiloidea" RELATED [UBERON:3000886] +synonym: "cartilago ypsiloides" RELATED [UBERON:3000886] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005179 ! pelvic region element +is_a: UBERON:0007844 ! cartilage element +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000894 +name: femoral ridge +namespace: uberon/phenoscape-anatomy +def: "Low crest that arises just behind the acetabular head and extends distally for about one-third the length of the femoral shaft." [AAO:LAP] +synonym: "crista femoris" RELATED [UBERON:3000894] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0000981 ! femur +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000895 +name: obsolete trochlear groove of femur +namespace: uberon/phenoscape-anatomy +def: "Canal on the posteroventral surface of the femoral head, which articulates with the ischial process on the rim of the acetabulum." [AAO:LAP] +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000896 +name: foveal depression +namespace: uberon/phenoscape-anatomy +def: "Ovoid roughened pit situated on the dorsal and anteroventral surface of the acetabular head wherein the ligaments attaching the bone to the acetabulum are inserted." [AAO:LAP] +is_a: UBERON:0004704 ! bone fossa +relationship: part_of UBERON:0006767 ! head of femur +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000898 +name: trochanteric crest +namespace: uberon/phenoscape-anatomy +def: "Paired ridges on the ventral surface of the femoral shaft that run toward the femoral trochanter; the posterior crest is less developed." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0000981 ! femur +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000903 +name: tibial crest +namespace: uberon/phenoscape-anatomy +def: "Ridge that arises from the dorso-masial side of the extensor surface of the tibia. It receives the insertion of the tendon of the extensor ilio-tibialis muscle." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0000979 ! tibia +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000904 +name: apophysis distalis of tibiofibula +namespace: uberon/phenoscape-anatomy +def: "Swelling on the extensor surface of the distal head of the tibiofibula." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0006714 ! tibiofibula +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000905 +name: caput ossis cruris +namespace: uberon/phenoscape-anatomy +def: "Proximal head of the tibiofibula that articulates with the distal head of the femur." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0006714 ! tibiofibula +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000906 +name: sulcus pro musculo extensori cruris brevis +namespace: uberon/phenoscape-anatomy +def: "Small canal on the proximal head of to the tibiofibula, lateral to the apophysis distalis, for the insertion of the cruris brevis muscle." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0006714 ! tibiofibula +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000907 +name: eminentia arcuata +namespace: uberon/phenoscape-anatomy +def: "Small crest on the extensor surface of the proximal head of the tibiofibula (tibial side)." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0006714 ! tibiofibula +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000908 +name: sulcus distalis ossis cruris +namespace: uberon/phenoscape-anatomy +def: "In a fused tibiofibula, longitudinal furrow in the distal portion of the compound bone that demarcates the area of fusion of both elements." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0006714 ! tibiofibula +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000909 +name: sulcus proximalis ossis cruris +namespace: uberon/phenoscape-anatomy +def: "In a fused tibiofibula, longitudinal furrow in the proximal portion of the compound bone that demarcates the area of fusion of both elements." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0006714 ! tibiofibula +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000910 +name: obsolete hind limb opening +namespace: uberon/phenoscape-anatomy +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000911 +name: foramen nutritium exterius +namespace: uberon/phenoscape-anatomy +def: "Foramen for the tibial artery and vein and the deep peroneal nerve; it pierces through the midpoint of the shaft of the tibiofibula." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005744 ! bone foramen +relationship: part_of UBERON:0006714 ! tibiofibula +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000915 +name: spatium intertarsale +namespace: uberon/phenoscape-anatomy +def: "Separation of the tibiale and fibulare along their longitudinal axia." [AAO:LAP] +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0004454 ! tarsal region +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000916 +name: apophysis proximalis +namespace: uberon/phenoscape-anatomy +def: "Swelling on the extensor surface of the proximal compound head of the tibiale and fibulare." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0009879 ! tarsal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000917 +name: apophysis distalis of tibiale fibulare +namespace: uberon/phenoscape-anatomy +def: "Swelling on the extensor surface of the distal compound head of the tibiale and fibulare." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0009879 ! tarsal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000921 +name: element Y of hind mesopodium +namespace: uberon/phenoscape-anatomy +def: "Oval tarsal element that is located on the anteromedial side of the tibiale. Anteriorly, it articulates with the proximal prehallux, tarsals 1, 2, and 3." [AAO:LAP] +is_a: UBERON:0015050 ! tarsus endochondral element +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000922 +name: prehallux skeleton +namespace: uberon/phenoscape-anatomy +def: "One to three or four elements located ventral and medial to the metatarsal of digit I. When more than one elements are present, they are smaller than the proximal prehallux." [AAO:LAP] +synonym: "prehallux" BROAD [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010712 ! limb skeleton subdivision +relationship: part_of UBERON:0009879 ! tarsal skeleton +relationship: part_of UBERON:0012136 ! prehallux +relationship: preaxialmost_part_of UBERON:0009879 ! tarsal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000931 +name: intercalary element of hind digit +namespace: uberon/phenoscape-anatomy +def: "Small elements present in all digits of the pes, when present in a taxon. Each intercalary element articulates with the anteroventral end of the penultimate phalanx proximally and the distal phalanx distally." [AAO:LAP] +is_a: UBERON:0004248 ! pedal digit bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000934 +name: foramen perforans tarsi +namespace: uberon/phenoscape-anatomy +def: "Small opening between the centrale and fibulare that allows the perforans tarsi artery to pass from the ventral to the dorsal side of the ankle." [AAO:LAP] +is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0009879 ! tarsal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000935 +name: obsolete scapular area +namespace: uberon/phenoscape-anatomy +def: "Dorso-lateral portion of the pectoral girdle." [AAO:LAP] +synonym: "pars scapularis" RELATED [UBERON:3000935] +synonym: "scapula et adscapulum" RELATED [UBERON:3000935] +synonym: "scapula-suprascapula area" RELATED [UBERON:3000935] +synonym: "scapulum et episcapulum" RELATED [UBERON:3000935] +is_obsolete: true +replaced_by: UBERON:0006849 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000936 +name: zonal element +namespace: uberon/phenoscape-anatomy +def: "All those parts of the pectoral girdle in the central region of the zonal area." [AAO:LAP] +is_a: UBERON:0004765 ! skeletal element +intersection_of: UBERON:0004765 ! skeletal element +intersection_of: part_of UBERON:3000757 ! zonal area +relationship: part_of UBERON:3000757 ! zonal area +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000937 +name: prezonal element +namespace: uberon/phenoscape-anatomy +def: "All those parts of the pectoral girdle that lie anterior to the zonal area." [AAO:LAP] +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:3000757 ! zonal area +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000938 +name: postzonal element +namespace: uberon/phenoscape-anatomy +def: "All those parts of the pectoral girdle that lies posterior to the zonal area." [AAO:LAP] +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:3000757 ! zonal area +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000941 +name: arciferal girdle +namespace: uberon/phenoscape-anatomy +def: "Pectoral girdle in which the epicoracoid cartilages are elaborated into posteriorly directed epicoracoid horns. Most arciferal pectoral girdles are characterized by fusion of the epicoracoid cartilages in the interclavicle region. Posterior to the clavicles, the epicoracoids usually are free and overlapping." [AAO:LAP] +is_a: UBERON:0007831 ! pectoral girdle skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000942 +name: firmisternal girdle +namespace: uberon/phenoscape-anatomy +def: "Pectoral girdle that lacks epicoracoid horns. The sternum is fused to the pectoral arch, and the epicoracoid cartilages of each half of the girdle are fused to one another. The midzonal length of the girdle is shorter than that of an arciferal girdle, but pre- and postzonal elements tend to be longer." [AAO:LAP] +is_a: UBERON:0007831 ! pectoral girdle skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000943 +name: pseudofirmisternal girdle +namespace: uberon/phenoscape-anatomy +def: "Modified arciferal pectoral girdle in which the fusion of the epicoracoid cartilages in the interclavicle region is extended posteriorly. Thus, the cartilages no longer overlap freely, and functionally a partially firmisternal condition is created." [AAO:LAP] +is_a: UBERON:0007831 ! pectoral girdle skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000944 +name: pseudoarciferal girdle +namespace: uberon/phenoscape-anatomy +def: "Modified firmisternal pectoral girdle in which the epicoracoid cartilages are partly free and overlapping; however, the epicoracoids are fused to one another and the sternum postermodially." [AAO:LAP] +is_a: UBERON:0007831 ! pectoral girdle skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000945 +name: inscriptional rib +namespace: uberon/phenoscape-anatomy +def: "Three pairs of cartilaginous elements posterior to the sternum that lie in the myosepta of the ventral trunk musculature." [AAO:LAP] +synonym: "abdominal ribs" RELATED [UBERON:3000945] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:3000938 ! postzonal element +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000948 +name: articular process +namespace: uberon/phenoscape-anatomy +def: "Paired processes located on the anterior end of the cricoid cartilage." [AAO:LAP] +synonym: "processus articularis anterior" RELATED [UBERON:3000948] +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0002375 ! cricoid cartilage +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000949 +name: posterior ramus of cleithrum +namespace: uberon/phenoscape-anatomy +def: "Laminar subdivision of the cleithrum that extends along the ventral (lateral) midbody of the suprascapula." [AAO:LAP] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004741 ! cleithrum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000950 +name: os triangulare +namespace: uberon/phenoscape-anatomy +def: "Small, broadly triangular bar of bone lying across the ventral side of the pharynx at the junction of the M. genio-hyoideus and the M. rectus cervicis superficialis." [AAO:Francis_1934] +synonym: "basi-branchial II" RELATED [UBERON:3000950] +synonym: "os thyroideum" RELATED [UBERON:3000950] +synonym: "os triquetum" RELATED [UBERON:3000950] +synonym: "sternum" RELATED [UBERON:3000950] +synonym: "urohyal" RELATED [UBERON:3000950] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0010272 ! hyoid apparatus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000951 +name: anterior radial +namespace: uberon/phenoscape-anatomy +def: "Paired, horn-like processes of basibranchial I that protrude in an antero-dorso-lateral direction, being more or less embedded in the tongue musculature. These elements contitute the hypohyals." [AAO:Francis_1934] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0010272 ! hyoid apparatus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000952 +name: posterior radial +namespace: uberon/phenoscape-anatomy +def: "Paired, horn-like processes of basibranchial I that protrude in an antero-dorso-lateral direction, being more or less embedded in the tongue musculature. They arise secondarily during metamorphosis, and are therefore not strictly part of the visceral skeleton." [AAO:Francis_1934] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0010272 ! hyoid apparatus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000953 +name: ceratobranchials II--IV +namespace: uberon/phenoscape-anatomy +def: "Paired bars that articulate with hypobranchial II. Reduction of loss of these elements is common in salamanders." [AAO:LAP] +synonym: "epibranchials" RELATED [UBERON:3000953] +is_a: UBERON:2002103 ! ceratobranchial series +relationship: part_of UBERON:0010272 ! hyoid apparatus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000954 +name: hypobranchial I +namespace: uberon/phenoscape-anatomy +def: "Paired bar that articulates with basibranchial I. It forms the anterior portion of the posterior cornu of the hyoid." [AAO:Francis_1934] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0010272 ! hyoid apparatus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000955 +name: ceratobranchial I +namespace: uberon/phenoscape-anatomy +def: "Paired bar that articulates with, or is fused to, hypobranchial I. It forms the posterior portion of the posterior cornu of the hyoid." [AAO:Francis_1934] +synonym: "epibranchial" RELATED [UBERON:3000955] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0010272 ! hyoid apparatus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000956 +name: hypobranchial II +namespace: uberon/phenoscape-anatomy +def: "Paired bar that articulates anteriorly with basibranchial I and posteriorly with ceratobranchials II--IV." [AAO:Duellman_and_Trueb_1994] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0010272 ! hyoid apparatus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000957 +name: obsolete basihyal +namespace: uberon/phenoscape-anatomy +def: "Paired, anterior element that articulates medially with basibranchial I and posterolaterally with the paired hypohyals." [AAO:LAP] +is_obsolete: true +consider: UBERON:0011614 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000961 +name: external integument structure +namespace: uberon/phenoscape-anatomy +def: "Structures of the dermis, epidermis, glands and pigment cells recognizable on the external surfaces of the integument." [AAO:EJS] +comment: Not clear how this differs from parent class. See https://github.com/obophenotype/uberon/issues/1305 +is_a: UBERON:0003102 ! surface structure +intersection_of: UBERON:0003102 ! surface structure +intersection_of: part_of UBERON:0002199 ! integument +relationship: part_of UBERON:0002199 ! integument +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000965 +name: basale commune (carpal) +namespace: uberon/phenoscape-anatomy +def: "Amalgamation of distal carpals 1 and 2." [AAO:EJS] +is_a: UBERON:0001481 ! distal carpal bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000966 +name: angulosplenial +namespace: uberon/phenoscape-anatomy +def: "Dermal bone of anuran lower jaw investing lingual and ventral surfaces of Meckel's cartilage; forming coronoid process and articulating with palatoquadrate posteriorly." [AAO:EJS] +synonym: "angular" RELATED [UBERON:3000966] +synonym: "goniale" RELATED [UBERON:3000966] +is_a: UBERON:0004768 ! bone of lower jaw +is_a: UBERON:0008907 ! dermal bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000969 +name: obsolete larval skeletal system +namespace: uberon/phenoscape-anatomy +comment: redundant with stage+skeletal system. Can be properly reinstated if needed. +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000972 +name: head external integument structure +namespace: uberon/phenoscape-anatomy +def: "Dermal, epidermal, glandular and pigment structures of the external head integument." [AAO:EJS] +is_a: UBERON:3000961 ! external integument structure +intersection_of: UBERON:3000961 ! external integument structure +intersection_of: part_of UBERON:0000033 ! head +relationship: part_of UBERON:0000033 ! head +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000977 +name: body external integument structure +namespace: uberon/phenoscape-anatomy +def: "Dermal, epidermal, glandular and pigment structures of the body integument." [AAO:EJS] +is_a: UBERON:3000961 ! external integument structure +intersection_of: UBERON:3000961 ! external integument structure +intersection_of: part_of UBERON:0002100 ! trunk +relationship: part_of UBERON:0002100 ! trunk +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000981 +name: limb external integument structure +namespace: uberon/phenoscape-anatomy +def: "Dermal, epidermal, glandular and pigment structures of the limb integument." [AAO:EJS] +is_a: UBERON:3000961 ! external integument structure +intersection_of: UBERON:3000961 ! external integument structure +intersection_of: part_of UBERON:0002101 ! limb +relationship: part_of UBERON:0002101 ! limb +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000982 +name: tail external integument structure +namespace: uberon/phenoscape-anatomy +def: "Dermal, epidermal, glandular and pigment structures of the tail integument." [AAO:EJS] +is_a: UBERON:3000961 ! external integument structure +intersection_of: UBERON:3000961 ! external integument structure +intersection_of: part_of UBERON:0007812 ! post-anal tail +relationship: part_of UBERON:0007812 ! post-anal tail +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000989 +name: pectoral fold +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000977 ! body external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000991 +name: dorsal folds +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000977 ! body external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000992 +name: obsolete principal cavity +namespace: uberon/phenoscape-anatomy +def: "The largest part of the nasal cavity, containing the olfactory epithelium." [AAO:EJS] +is_obsolete: true +replaced_by: UBERON:3000089 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000993 +name: otic and occipital +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:3010013 ! larval chondrocranium +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000994 +name: longitudinal dorsal folds +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000991 ! dorsal folds +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000995 +name: transversal dorsal folds +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000991 ! dorsal folds +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000998 +name: suprarostral cartilage +namespace: uberon/phenoscape-anatomy +def: "Larval upper jaws articulate with trabecular horns." [AAO:EJS] +is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0013765 ! digestive system element +relationship: part_of UBERON:0001708 ! jaw skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3000999 +name: dorsal pouch +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000977 ! body external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3001000 +name: obsolete palatoquadrate and suspensorium +namespace: uberon/phenoscape-anatomy +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3001001 +name: obsolete lateral line receptor organ +namespace: uberon/phenoscape-anatomy +is_obsolete: true +replaced_by: UBERON:0008904 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3001002 +name: basale commune (tarsal) +namespace: uberon/phenoscape-anatomy +def: "Amalgamation of distal tarsals 1 and 2." [AAO:EJS] +is_a: UBERON:0010721 ! distal tarsal bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3001003 +name: cloacal fold +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000977 ! body external integument structure +relationship: part_of UBERON:0000162 ! cloaca +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3001005 +name: dorsolateral fold +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000977 ! body external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3001007 +name: body granules +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000977 ! body external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3001008 +name: body wart +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000977 ! body external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3001009 +name: body spicule +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000977 ! body external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3001010 +name: body tubercle +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000977 ! body external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010005 +name: obsolete muscular process +namespace: uberon/phenoscape-anatomy +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010006 +name: dorsal skin texture +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000977 ! body external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010007 +name: pit organ +namespace: uberon/phenoscape-anatomy +alt_id: UBERON:3010823 +def: "Mechanoreceptive organ of the lateral line, smaller than neuromasts, they are located on the surface of the epidermis. These receptors receive afferent and efferent innervation." [AAO:EJS] +is_a: UBERON:0000062 ! organ +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0002540 ! lateral line system +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010010 +name: ventral skin texture +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000977 ! body external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010011 +name: axillary glands +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3010603 ! body gland +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010013 +name: larval chondrocranium +namespace: uberon/phenoscape-anatomy +def: "Cartilaginous larval skull." [AAO:EJS] +is_a: UBERON:0010323 ! cranial skeletal system +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010014 +name: inguinal glands +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3010603 ! body gland +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010018 +name: M. glutaeus magnus +namespace: uberon/phenoscape-anatomy +def: "Originates from the superior process of the ilium and inserts on the aponeuronis of the M. cruralis." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010021 +name: dorsal glands +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3010603 ! body gland +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010022 +name: M. tensor fasciae latae +namespace: uberon/phenoscape-anatomy +def: "Originates on the ventro-lateral aspect of the ala ossis ilei and the ventral surface of the iliacus externus. Inserts on the lateral surface of the cruralis, the dorso-lateral surface of the gluteus magnus, and on the aponeurosis of the cruralis." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010027 +name: M. sartorius +namespace: uberon/phenoscape-anatomy +def: "Originates on the ventral pelvic rim, the pubic region, and the ventral surface of the adductor longus. The insertion bifurcates distally; the ventral portion attaches to the aponeurosis of the cruralis and the dorsal part attaches to the distal attachment of the gracilis major, the semitendinosus, and to the aponeurosis of the cruralis." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010029 +name: obsolete gonochoristic organism +namespace: uberon/phenoscape-anatomy +def: "Multi-cellular organism that has male and female sexes." [AAO:BJB] +xref: CARO:0000048 "gonochoristic organism" +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010031 +name: ventral glands +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3010603 ! body gland +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010032 +name: M. semitendinosus +namespace: uberon/phenoscape-anatomy +def: "Originates by two tendons: one on the postero-ventral aspect of the pelvic rim, the other, a dorsal tendon from the postero-dorsal pelvic rim under the ventral edge of M. semimembranosus. Inserts on the ventral surface of the tibiofibula." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010039 +name: protandrous hermaphroditic organism +namespace: uberon/phenoscape-anatomy +def: "Sequential hermaphroditic organism that produces gametes first of the male sex, and then later of the female sex." [AAO:BJB] +is_a: UBERON:0010895 ! sequential hermaphroditic organism +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010042 +name: protogynous hermaphroditic organism +namespace: uberon/phenoscape-anatomy +def: "Sequential hermaphroditic organism that produces gametes first of the female sex, and then later of the male sex." [AAO:BJB] +is_a: UBERON:0010895 ! sequential hermaphroditic organism +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010044 +name: dorsal crest +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000977 ! body external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010045 +name: centrale 1 +namespace: uberon/phenoscape-anatomy +def: "Distal-most centrale when two are present." [AAO:EJS] +is_a: UBERON:0001447 ! tarsal bone +is_a: UBERON:0012131 ! centrale +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010047 +name: M. quadratus femoris +namespace: uberon/phenoscape-anatomy +def: "Originates on the ventro-lateral border of the ischium and inserts on the ventro-medial surface of the femur at the base of caput femoris." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010049 +name: M. gemellus +namespace: uberon/phenoscape-anatomy +def: "Originates from the dorso-lateral margin of the ischium and inserts on the medial surface of the femur." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010058 +name: dermal annular fold +def: "A dermal fold surrounding the body reflecting body segmentation. Found in Caecilians." [ISBN:080184780X] +synonym: "annuli" BROAD PLURAL [AAO:0010058] +synonym: "annulus" BROAD [] +synonym: "caecilian annulus" EXACT [] +is_a: UBERON:3000977 ! body external integument structure + +[Term] +id: UBERON:3010060 +name: centrale (fore) +namespace: uberon/phenoscape-anatomy +def: "Rectangular cartilage or bone between the distal basal commune and the proximal intermedium." [AAO:EJS] +is_a: UBERON:0001435 ! carpal bone +is_a: UBERON:0012131 ! centrale +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010061 +name: anterior quadratocranial commissure +namespace: uberon/phenoscape-anatomy +def: "Cartilage that bridges palatoquadrate to ethmoid region." [AAO:EJS] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:0013765 ! digestive system element +relationship: part_of UBERON:0004752 ! palatoquadrate cartilage +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010065 +name: M. gracilis major +namespace: uberon/phenoscape-anatomy +def: "Originates by a broad tendon from the postero-ventral surface of the pelvic rim and inserts by two tendons. One broad tendon inserts on the knee aponeurosis, and in part on the ventro-medial surface of the tibiofibula. The other long tendon inserts on the posterior surface of the tibiofibula just below the proximal head." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010067 +name: M. gracilis minor +namespace: uberon/phenoscape-anatomy +def: "Originates from the pelvic rim just ventral to the anus and merges with M. gracilis major. M. gracilis minor also attaches to the skin." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010068 +name: M. semimembranosus +namespace: uberon/phenoscape-anatomy +def: "Originates on the ventro-lateral surface of the ischium below the anus and inserts on the ventro-medial aspect of the femur and the head of the tibiofibula by a stout tendon, which is formed by the ventral origin of the plantaris longus." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010069 +name: intermedium (fore) +namespace: uberon/phenoscape-anatomy +def: "Quadrangular cartilage or bone lying between the preaxial radiale and the postaxial ulnare in the proximal level of the mesopodium." [AAO:EJS] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0009880 ! carpal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010070 +name: M. ileo-fibularis +namespace: uberon/phenoscape-anatomy +def: "Originates from the ventral border of the ala ossis ilei just posterior to the origin of M. glutaeus maximus. Insterts in the aponeurosis covering the knee joint." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010071 +name: cranial crest +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000972 ! head external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010072 +name: M. pyriformis +namespace: uberon/phenoscape-anatomy +def: "Originates on the dorso-lateral border of the distal urostyle and inserts on the dorsal surface of the crista femoris. This muscle inserts between the M. ilio-fibularis/M. glutaeus magnus and M. semimembranosus." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010073 +name: centrale 2 +namespace: uberon/phenoscape-anatomy +def: "The proximal-most rectangular cartilage or bone when two centralelia are present." [AAO:EJS] +is_a: UBERON:0001447 ! tarsal bone +is_a: UBERON:0012131 ! centrale +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010074 +name: M. ileo-femoralis +namespace: uberon/phenoscape-anatomy +def: "Originates from the postero-ventral surface of the ala ossis ilei and from the insertion tendon of M. ileo-fibularis. Inserts along the dorso-medial border of the femur." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010075 +name: tympanic fold +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000972 ! head external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010076 +name: M. iliacus internus +namespace: uberon/phenoscape-anatomy +def: "Muscle originates on the ventral border of the ala ossis ilei to insert on the dorso-medial surface of the femur." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010078 +name: M. iliacus externus +namespace: uberon/phenoscape-anatomy +def: "Originates on the ventral and lateral surfaces of the ala ossis ilei and inserts on the postero-dorsal face of the caput femoris." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010079 +name: upper eyelid protuberances +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:3000972 ! head external integument structure +relationship: part_of UBERON:0001712 ! upper eyelid +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010080 +name: snout protuberances +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000972 ! head external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010081 +name: interorbital fold +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000972 ! head external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010082 +name: M. pulmonum proprius +namespace: uberon/phenoscape-anatomy +def: "Originates along the connective tissue covering the dorsal surface of the lung and inserts on the dorsal surface of the femur. Muscle found only in Pipa." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010084 +name: M. tibialis posticus +namespace: uberon/phenoscape-anatomy +def: "Originates on the entire medial surface of the shaft of the tibiofibula. Inserts on the tibiale by a long tendon proximo-lateral to the insertion of the medial belly of M. tibialis anticus longus." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010085 +name: postrictal protuberances +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000972 ! head external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010087 +name: M. tibialis anticus longus +namespace: uberon/phenoscape-anatomy +def: "Originates on the ventro-lateral surface of the medial condyle of the femur. Its tendon extends in a groove over the knee in the lateral surface of the tibiofibular head, and penetrates the M. peroneus tendon. Insertion is by a lateral and medial head on the dorso-lateral surface of the fibulare and the medial border of the proximal end of the tibiale respectively." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010089 +name: M. extensor cruris brevis +namespace: uberon/phenoscape-anatomy +def: "Originates by a slender tendon from the ventral surface of the medial condyle of the femur and passes over the knee to insert as a fleshy belly on the ventro-lateral surface of the tibiofibula." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010090 +name: M. tibialis anticus brevis +namespace: uberon/phenoscape-anatomy +def: "Originates from the dorso-lateral surface of the tibiofibula and inserts on the proximo-medial surface of the tibiale dorsal to the medial head of M. tibialis anticus longus." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010091 +name: upper lip protuberances +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:3000972 ! head external integument structure +relationship: part_of UBERON:0001834 ! upper lip +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010092 +name: basitrabecular process +namespace: uberon/phenoscape-anatomy +def: "A process of the otic capsule that will bridge to the palatoquadrate basal process." [AAO:EJS] +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:4200139 ! palatoquadrate element +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010093 +name: villosities +namespace: uberon/phenoscape-anatomy +def: "Small hair or nipple like projection on the integument. " [R. C. Stebbins 1951] +is_a: UBERON:0013703 ! integumentary projection +relationship: part_of UBERON:3000977 ! body external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010094 +name: quadratoethmoid process +namespace: uberon/phenoscape-anatomy +def: "Process that projects from anterior margin of commissure as site of attachment for quadratoethmoid ligament." [AAO:EJS] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:3010061 ! anterior quadratocranial commissure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010096 +name: vocal sac +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000972 ! head external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010097 +name: M. tarsalis posticus +namespace: uberon/phenoscape-anatomy +def: "Originates on the medial border of the ligamentum calcanei and inserts along the ventral surface of the tibiale." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010098 +name: M. plantaris profundus +namespace: uberon/phenoscape-anatomy +def: "Originates on the medial half of the ligamentum calcanei and inserts along the dorsal surface of the aponeurosis plantaris and extends to the level of the base of the prehallux." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010099 +name: obsolete musculus rectus superior +def: "Cranial nerve III innervated; dorsal in the rectus group." [AAO:EJS] +is_obsolete: true +replaced_by: UBERON:0006323 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010100 +name: mental gland +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3010604 ! cranial glands +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010101 +name: obsolete musculus rectus inferior +namespace: uberon/phenoscape-anatomy +def: "Cranial nerve III innervated; ventral in the rectus group." [AAO:EJS] +is_obsolete: true +replaced_by: UBERON:0006322 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010103 +name: vocal sac glands +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3010604 ! cranial glands +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010104 +name: pectoral glands +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3010603 ! body gland +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010105 +name: anterodorsal lateral line nerve (ADLLN) +namespace: uberon/phenoscape-anatomy +def: "Sensory nerve of the anterior lateral line component. It develops from the preotic anterodorsal placode. ADLLN branches into two rami innervating orbital lines of neuromasts." [AAO:SIQ] +is_a: UBERON:0008906 ! lateral line nerve +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010106 +name: tympanic papilla +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000972 ! head external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010109 +name: anteroventral lateral line nerve (AVLLN) +namespace: uberon/phenoscape-anatomy +def: "Sensory nerve of the anterior lateral line component. It develops from preotic anteroventral placode. AVLLN innervates lower jaw lines of neuromasts." [AAO:EJS] +is_a: UBERON:0008906 ! lateral line nerve +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010113 +name: obsolete musculus rectus medialis +def: "Cranial nerve III innervated; medial in the rectus group." [AAO:EJS] +is_obsolete: true +replaced_by: UBERON:0001602 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010115 +name: posterior lateral line nerve (PLLN) +namespace: uberon/phenoscape-anatomy +def: "Sensory nerve of the posterior lateral line component. It develops from de postotic posterior placode. PLLN innervates the trunk lines of neuromasts." [AAO:EJS] +is_a: UBERON:0008906 ! lateral line nerve +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010116 +name: obsolete lower eyelid texture +namespace: uberon/phenoscape-anatomy +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010117 +name: obsolete musculus obliquus inferior +def: "Cranial nerve III innverated; ventral in the obliquus group." [AAO:EJS] +is_obsolete: true +replaced_by: UBERON:0006320 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010118 +name: quadrato-orbital commissure +namespace: uberon/phenoscape-anatomy +def: "Cartilage that bridges palatoquadrate muscular process to dorsal orbitonasal plate." [AAO:EJS] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:4200139 ! palatoquadrate element +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010123 +name: finger fringes +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000981 ! limb external integument structure +relationship: part_of UBERON:0002389 ! manual digit +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010124 +name: toe fringes +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000981 ! limb external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010125 +name: musculus levator bulbi +namespace: uberon/phenoscape-anatomy +def: "Cranial nerve V innervated; ventral to the eye." [AAO:EJS] +is_a: UBERON:0001601 ! extra-ocular muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010126 +name: middle lateral line nerve (MLLN) +namespace: uberon/phenoscape-anatomy +def: "Sensory nerve of the posterior lateral line component. It develops from the postotic middle placode. MLLN innervates neuromasts located over the otic capsule and the suprabranchial line of neuromasts." [AAO:EJS] +is_a: UBERON:0008906 ! lateral line nerve +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010127 +name: fringe on postaxial edge of finger IV +namespace: uberon/phenoscape-anatomy +comment: Kok & Castroviejo-Fisher (2008) Zootaxa. +is_a: UBERON:3010123 ! finger fringes +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010128 +name: taeniae tecti marginalis +namespace: uberon/phenoscape-anatomy +def: "Compose lateral rim of frontoparietal fenestra, ventrally confluent with orbital cartilages, posteriorly confluent with tectum synoticum." [AAO:EJS] +is_a: UBERON:0003932 ! cartilage element of chondrocranium +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010130 +name: taenia tecti transversalis +namespace: uberon/phenoscape-anatomy +def: "Cartilaginous connection that partitions frontoparietal fenestra into anterior and posterior regions. Often persists form larva into adults." [AAO:EJS] +is_a: UBERON:0003932 ! cartilage element of chondrocranium +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010131 +name: orbital cartilages +namespace: uberon/phenoscape-anatomy +def: "Forms lateral walls of braincase, confluent posteriorly with otic capsules via taenia tecti marginalis and anteriorly with lamina orbitonasalis via sphenethmoid commissure." [AAO:EJS] +is_a: UBERON:0003933 ! cranial cartilage +relationship: part_of UBERON:0001703 ! neurocranium +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010132 +name: taenia tecti medialis +namespace: uberon/phenoscape-anatomy +def: "Cartilaginous connection between the taenia tecti transversalis to the tectum synoticum, and subdividing the parietal fenestra into left and right fenestrae. Often persist from larva to adult." [] +is_a: UBERON:0003932 ! cartilage element of chondrocranium +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010136 +name: M. cruralis +namespace: uberon/phenoscape-anatomy +def: "Originates from the anterior surface of the hip joint capsule between the iliacus internus and the pectineus. Inserts by an aponeurosis attaching to the condyles of the femur and on the head of the cruris. This continues over the cruris to cover the tibialis anticus longus and peroneus to insert on the dorsal surface of those muscles." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010137 +name: obsolete trabecular plate +namespace: uberon/phenoscape-anatomy +def: "Ventral plate anterior to and confluent with ethmoid plate." [AAO:EJS] +is_obsolete: true +replaced_by: UBERON:0011242 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010138 +name: trabecular horn +namespace: uberon/phenoscape-anatomy +def: "Anterior extensions." [AAO:curator] +synonym: "trabecular horns" RELATED [UBERON:3010138] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0011241 ! ethmoid region +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010142 +name: occipital arch +namespace: uberon/phenoscape-anatomy +def: "Posterior chondrocranium forming ventral and lateral margins of foramen magnum, medial to otic capsules." [AAO:EJS] +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:3000993 ! otic and occipital +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010144 +name: odontoids +namespace: uberon/phenoscape-anatomy +def: "Toothlike processes found on the mandible of some anurans; can be formed by dentary or dentary + mentomeckelian bones; odontoids lack enamel and dentine present in true teeth." [AAO:EJS] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001710 ! lower jaw region +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010145 +name: otic operculum +namespace: uberon/phenoscape-anatomy +def: "Plate of cartilage occluding fenestra ovalis." [AAO:EJS] +is_obsolete: true +replaced_by: UBERON:3010728 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010146 +name: lacrimal +namespace: uberon/phenoscape-anatomy +def: "Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal." [AAO:EJS] +synonym: "ectethmoid" RELATED [UBERON:3010146] +is_a: UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010156 +name: middle cavity +namespace: uberon/phenoscape-anatomy +is_obsolete: true +replaced_by: UBERON:3000087 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010159 +name: obsolete olfactory receptor cell +namespace: uberon/phenoscape-anatomy +is_obsolete: true +replaced_by: CL:0000207 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010160 +name: obsolete supporting cell +namespace: uberon/phenoscape-anatomy +comment: replaced with 'olfactory epithelium support cell' due to axiom (removed) that it was part of olfactory epithelium. +is_obsolete: true +replaced_by: CL:0000853 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010161 +name: obsolete olfactory basal cell +namespace: uberon/phenoscape-anatomy +comment: Obsoleted as it had no definition or logical axiom beyond being placed as an 'olfactory 'epithelium', which is incorrect for a cell (should be part of). If a definition is found we can rescuscitate this class.[UBERON:cjm] +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010163 +name: metacarpal fold +namespace: uberon/phenoscape-anatomy +comment: Kok & Castroviejo-Fisher (2008) Zootaxa. +is_a: UBERON:3000981 ! limb external integument structure +relationship: part_of UBERON:0004453 ! metacarpus region +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010164 +name: ulnar fold +namespace: uberon/phenoscape-anatomy +comment: Kok & Castroviejo-Fisher (2008) Zootaxa. +is_a: UBERON:3000981 ! limb external integument structure +relationship: part_of UBERON:0002103 ! hindlimb +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010166 +name: fringe on postaxial edge of toe V +namespace: uberon/phenoscape-anatomy +comment: Kok & Castroviejo-Fisher (2008) Zootaxa. +is_a: UBERON:3010124 ! toe fringes +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010167 +name: metatarsal fold +namespace: uberon/phenoscape-anatomy +comment: Kok & Castroviejo-Fisher (2008) Zootaxa. +is_a: UBERON:3000981 ! limb external integument structure +relationship: part_of UBERON:0000983 ! metatarsus region +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010168 +name: tarsal fringe +namespace: uberon/phenoscape-anatomy +comment: Kok & Castroviejo-Fisher (2008) Zootaxa. +is_a: UBERON:3000981 ! limb external integument structure +relationship: part_of UBERON:0004454 ! tarsal region +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010170 +name: ungual flap +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000981 ! limb external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010172 +name: subarticular tubercles +namespace: uberon/phenoscape-anatomy +def: "Is a integumentary structure located on the ventral surface of the hand and/or foot. Found at the junction between, in the hand, the metacarpal and most proximal phalanx of the digit and between phalanges, and in the foot between the metatarsal and most proximal phalanx of the digit and between phalanges." [] +is_a: UBERON:0005813 ! tubercle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010173 +name: supernumerary tubercles +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0005813 ! tubercle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010175 +name: circumferential groove +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000981 ! limb external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010177 +name: obsolete nuptial pads +namespace: uberon/phenoscape-anatomy +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010178 +name: finger glands +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3010606 ! limb gland +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010179 +name: web glands +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3010606 ! limb gland +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010181 +name: humeral glands +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3010606 ! limb gland +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010182 +name: tibial glands +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3010606 ! limb gland +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010183 +name: femoral glands +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3010606 ! limb gland +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010184 +name: inner metatarsal tubercle +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0005813 ! tubercle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010186 +name: outer metatarsal tubercle +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0005813 ! tubercle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010187 +name: inner metacarpal tubercle +namespace: uberon/phenoscape-anatomy +synonym: "thenar tubercle" RELATED [UBERON:3010187] +is_a: UBERON:0005813 ! tubercle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010188 +name: outer metacarpal tubercle +namespace: uberon/phenoscape-anatomy +synonym: "palmar tubercle" RELATED [UBERON:3010188] +is_a: UBERON:0005813 ! tubercle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010189 +name: ulnar protuberances +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000981 ! limb external integument structure +relationship: part_of UBERON:0002103 ! hindlimb +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010190 +name: tibial protuberances +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000981 ! limb external integument structure +relationship: part_of UBERON:0002103 ! hindlimb +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010191 +name: calcar anterior +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000981 ! limb external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010192 +name: calcar posterior +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000981 ! limb external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010193 +name: prepollical protuberances +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000981 ! limb external integument structure +relationship: part_of UBERON:0005880 ! prepollex +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010194 +name: mediale +namespace: uberon/phenoscape-anatomy +def: "A recurrent variant of salamanders; a rhomboidal cartilage lying immediately postaxial from the centrale or centrale 1." [AAO:EJS] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0009879 ! tarsal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010195 +name: lateral appendix +namespace: uberon/phenoscape-anatomy +def: "A small lateral diverticulum of the nasal cavity found in anuran larvae." [AAO:EJS] +is_a: UBERON:0000064 ! organ part +relationship: located_in UBERON:0001707 ! nasal cavity +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010197 +name: lateral recess +namespace: uberon/phenoscape-anatomy +def: "A part of the inferior cavity of the olfactory organ, found in anurans." [AAO:EJS] +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0001707 ! nasal cavity +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010200 +name: vasculature of respiratory integument +namespace: uberon/phenoscape-anatomy +def: "Blood vessels in respiratory skin." [AAO:EJS] +is_a: UBERON:0003504 ! respiratory system blood vessel +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0001004 ! respiratory system +intersection_of: part_of UBERON:0002199 ! integument +relationship: part_of UBERON:0002199 ! integument +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010201 +name: dorsal tail tubercle +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000982 ! tail external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010202 +name: tail base gland +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000982 ! tail external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010203 +name: dorsal tail fin +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000982 ! tail external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010204 +name: ventral tail fin +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000982 ! tail external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010205 +name: postminimus +namespace: uberon/phenoscape-anatomy +def: "A rounded cartilage lying in the postaxial margin of the mesopodium, adjacent to the distal end of the fibulare." [AAO:EJS] +comment: Often consider atavistic when present in extant salamnders (Caudata) +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0007844 ! cartilage element +relationship: part_of UBERON:0009879 ! tarsal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010209 +name: keratinous claw +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000981 ! limb external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010217 +name: obsolete carotid +namespace: uberon/phenoscape-anatomy +def: "Either of two arteries which carry blood to the head." [AAO:BJB] +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010218 +name: obsolete external carotid +namespace: uberon/phenoscape-anatomy +def: "An artery which supplies blood to the muscles of the tongue and floor of the mouth via four major branches." [AAO:BJB] +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010219 +name: obsolete internal carotid +namespace: uberon/phenoscape-anatomy +def: "An artery which supplies the upper jaw and cranium." [AAO:BJB] +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010220 +name: obsolete orbital region +namespace: uberon/phenoscape-anatomy +def: "An anatomical cluster that is part of the cranium and structurally supports the eye." [AAO:EJS] +is_obsolete: true +replaced_by: UBERON:0001697 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010224 +name: obsolete vertebral +namespace: uberon/phenoscape-anatomy +is_obsolete: true +consider: UBERON:0010913 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010226 +name: postiliac glands +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3010603 ! body gland +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010227 +name: costal protuberances +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000977 ! body external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010229 +name: costal grooves +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000977 ! body external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010231 +name: costal folds +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000977 ! body external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010235 +name: nuchal groove +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0006846 ! surface groove +is_a: UBERON:3000972 ! head external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010239 +name: subocular groove +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000972 ! head external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010240 +name: Nobelian rod +namespace: uberon/phenoscape-anatomy +def: "Either of a pair of cartilaginous rods that support the intromittent organ of male Ascaphus, and are attached to the posteroventral part of the pelvic girdle." [AAO:EJS, http://orcid.org/0000-0002-6601-2165, http://purl.obolibrary.org/obo/uberon/tracker/200] +synonym: "Nobelian bone" RELATED [] +synonym: "Nobelian element" RELATED [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0005179 ! pelvic region element +is_a: UBERON:0007844 ! cartilage element +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton +relationship: part_of UBERON:3010260 ! intromittent organ (Ascaphus type) +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010241 +name: labial fold +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000972 ! head external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010242 +name: nasolabial groove +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0006846 ! surface groove +is_a: UBERON:3000972 ! head external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010243 +name: ventricular musculature +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0002082 ! cardiac ventricle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010256 +name: obsolete spermatocyte +namespace: uberon/phenoscape-anatomy +alt_id: UBERON:3010302 +is_obsolete: true +replaced_by: CL:0000017 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010259 +name: phallodeum +namespace: uberon/phenoscape-anatomy +def: "Eversible phalloid portion of the cloaca that is inserted in the female's vent during copulation. Found in male Caecillians." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0008811 ! intromittent organ +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010260 +name: intromittent organ (Ascaphus type) +namespace: uberon/phenoscape-anatomy +def: "A tail like posterior extension of the cloaca supported by a pair of Nobelian rods" [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0008811 ! intromittent organ +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010262 +name: capitulum of radio-ulna +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0006715 ! radio-ulna +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010272 +name: obsolete asexual organism +namespace: uberon/phenoscape-anatomy +def: "Multi-cellular organism that does not produce gametes." [AAO:BJB] +xref: CARO:0000030 "asexual organism" +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010273 +name: obsolete cell space +namespace: uberon/phenoscape-anatomy +def: "Anatomical space that is part of a cell." [AAO:BJB] +xref: CARO:0000062 "cell space" +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010274 +name: obsolete epithelial cell +namespace: uberon/phenoscape-anatomy +def: "Cell which has as its part a cytoskeleton that allows for tight cell to cell contact and which has apical-basal cell polarity." [AAO:BJB] +is_obsolete: true +replaced_by: CL:0000066 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010275 +name: obsolete obsolete single cell organism +namespace: uberon/phenoscape-anatomy +def: "Cell that is an individual member of a species." [AAO:BJB] +comment: TO DO: replace with new CARO term. +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010277 +name: obsolete tip +namespace: uberon/phenoscape-anatomy +def: "Anatomical point that is the apex of a projection or anything long and tapered; can be bony or cartilage." [AAO:BJB] +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010283 +name: obsolete animal blastomere +namespace: uberon/phenoscape-anatomy +def: "Pigmented, smaller blastomere of the animal (upper) hemisphere of the cleaving embryo." [AAO:BJB] +synonym: "micromere" RELATED [UBERON:3010283] +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010284 +name: obsolete vegetal blastomere +namespace: uberon/phenoscape-anatomy +def: "Unpigmented, larger blastomere of the vegetal (lower) hemisphere of the cleaving embryo." [AAO:BJB] +synonym: "macromere" RELATED [UBERON:3010284] +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010285 +name: obsolete bottle cell +namespace: uberon/phenoscape-anatomy +def: "Cell type that is first to migrate inwards at the blastopore during gastrulation." [AAO:BJB] +comment: replace with CL:0000020 once cl is released. +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010286 +name: obsolete chondrocyte +namespace: uberon/phenoscape-anatomy +def: "Polymorphic cell type that forms cartilage." [AAO:BJB] +is_obsolete: true +replaced_by: CL:0000138 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010287 +name: obsolete ciliated cell +namespace: uberon/phenoscape-anatomy +synonym: "ciliated cell" BROAD [UBERON:3010287] +is_obsolete: true +replaced_by: CL:0000064 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010288 +name: obsolete fibroblast +namespace: uberon/phenoscape-anatomy +def: "A connective tissue cell that secretes an extracellular matrix rich in collagen and other macromolecules." [AAO:BJB] +is_obsolete: true +replaced_by: CL:0000057 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010289 +name: obsolete follicle cell +namespace: uberon/phenoscape-anatomy +is_obsolete: true +replaced_by: CL:0000477 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010290 +name: obsolete germ line cell +namespace: uberon/phenoscape-anatomy +synonym: "germ line cells" RELATED [UBERON:3010290] +is_obsolete: true +replaced_by: CL:0000039 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010291 +name: obsolete gamete +namespace: uberon/phenoscape-anatomy +is_obsolete: true +replaced_by: CL:0000300 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010292 +name: obsolete germ cell +namespace: uberon/phenoscape-anatomy +synonym: "germ cells" EXACT [UBERON:3010292] +is_obsolete: true +replaced_by: CL:0000586 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010293 +name: obsolete primordial germ cell +namespace: uberon/phenoscape-anatomy +def: "Primitive cell type that is involved in the reproduction of the organism beginning with the sexual differentiation of the gonads at NF stage 52. In males specifically, it migrates from the genital ridge cortical region into the medullary tissue, where it forms spermatogonia. In females it is embedded in the cortical region and multiplies as oogonia." [ISBN:0815318960] +synonym: "PGC" EXACT [UBERON:3010293] +synonym: "primitive germ cell" RELATED [UBERON:3010293] +is_obsolete: true +replaced_by: CL:0000670 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010295 +name: obsolete spermatozoon +namespace: uberon/phenoscape-anatomy +def: "A mature male germ cell that develops from a spermatid." [CL:0000019] +synonym: "sperm" RELATED [UBERON:3010295] +synonym: "spermatozoa" RELATED [UBERON:3010295] +is_obsolete: true +replaced_by: CL:0000019 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010296 +name: obsolete oocyte +namespace: uberon/phenoscape-anatomy +is_obsolete: true +replaced_by: CL:0000023 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010297 +name: obsolete primary oogonium +namespace: uberon/phenoscape-anatomy +def: "A germ cell that is a primordial oocyte in a female and that develops into secondary oogonia by mitotic division." [XAO:EJS] +synonym: "primary oogonia" RELATED [UBERON:3010297] +is_obsolete: true +replaced_by: CL:0000654 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010298 +name: obsolete primary spermatogonium +namespace: uberon/phenoscape-anatomy +def: "A germ cell that is a primordial spermatocyte in a male and that develops into secondary spermatogonia by mitotic division." [ISSN:0289-0003] +synonym: "primary spermatogonia" RELATED [UBERON:3010298] +is_obsolete: true +replaced_by: CL:0000656 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010299 +name: obsolete secondary oogonium +namespace: uberon/phenoscape-anatomy +def: "A type of germ cell that results from the mitotic division of a primary oogonium." [XAO:EJS] +synonym: "secondary oogonia" RELATED [UBERON:3010299] +is_obsolete: true +replaced_by: CL:0000655 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010300 +name: obsolete secondary spermatogonium +namespace: uberon/phenoscape-anatomy +def: "A type of germ cell that results from the mitotic division of a primary spermatogonium." [ISSN:0289-0003] +synonym: "secondary spermatogonia" RELATED [UBERON:3010300] +is_obsolete: true +replaced_by: CL:0000657 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010301 +name: obsolete spermatid +namespace: uberon/phenoscape-anatomy +is_obsolete: true +replaced_by: CL:0000018 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010303 +name: fasciculated network of fibrils +namespace: uberon/phenoscape-anatomy +synonym: "coelomic envelope" BROAD [UBERON:3010303] +is_a: UBERON:0000478 ! extraembryonic structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010305 +name: obsolete germinal vesicle +namespace: uberon/phenoscape-anatomy +synonym: "GV" EXACT [UBERON:3010305] +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010306 +name: obsolete mitochondrial aggregate +namespace: uberon/phenoscape-anatomy +def: "A large distinctive organelle aggregate comprised of mitochondria found in developing oocytes of many species. From Pepling et al. 2007. " [] +synonym: "Balbiani body" EXACT [] +synonym: "mitochondrial cloud" EXACT [] +is_obsolete: true +replaced_by: GO:0032019 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010307 +name: obsolete polar body +namespace: uberon/phenoscape-anatomy +is_obsolete: true +replaced_by: CL:0002090 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010308 +name: obsolete lymphocyte +namespace: uberon/phenoscape-anatomy +def: "A cell of the B cell, T cell, or natural killer cell lineage." [AAO:BJB] +is_obsolete: true +replaced_by: CL:0000542 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010309 +name: obsolete B cell +namespace: uberon/phenoscape-anatomy +def: "A lymphocyte of B lineage with the phenotype CD19-positive and surface immunoglobulin-positive." [AAO:BJB] +is_obsolete: true +replaced_by: CL:0000236 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010310 +name: obsolete natural killer cell +namespace: uberon/phenoscape-anatomy +def: "A lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation via germline encoded activation receptors and also regulate immune responses via cytokine release and direct contact with other cells." [AAO:BJB] +synonym: "NK cell" EXACT [UBERON:3010310] +is_obsolete: true +replaced_by: CL:0000623 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010311 +name: obsolete T cell +namespace: uberon/phenoscape-anatomy +def: "A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex." [AAO:BJB] +is_obsolete: true +replaced_by: CL:0000084 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010312 +name: obsolete thymocyte +namespace: uberon/phenoscape-anatomy +def: "An immature T cell located in the thymus." [AAO:BJB] +is_obsolete: true +replaced_by: CL:0000893 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010313 +name: obsolete myoblast +namespace: uberon/phenoscape-anatomy +def: "Embryonic (precursor) cell of the myogenic lineage that develops from the mesoderm." [AAO:BJB] +is_obsolete: true +replaced_by: CL:0000056 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010314 +name: obsolete abdominal myoblast +namespace: uberon/phenoscape-anatomy +def: "The myoblast that forms the muscles of the anterior abdominal walls." [UBERON:3010314] +synonym: "abdominal musculature" RELATED [UBERON:3010314] +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010315 +name: obsolete neuron +namespace: uberon/phenoscape-anatomy +def: "Cell that is the basic unit of nervous tissue, each consisting of a body, an axon, and dendrites, and the purpose of which is to receive, conduct, and transmit impulses in the nervous system." [AAO:BJB] +synonym: "nerve cell" RELATED [UBERON:3010315] +is_obsolete: true +replaced_by: CL:0000540 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010317 +name: obsolete pigment cell +namespace: uberon/phenoscape-anatomy +def: "Cell type that contains a deposition of coloring matter." [AAO:EJS] +synonym: "chromatophore" RELATED [UBERON:3010317] +is_obsolete: true +replaced_by: CL:0000147 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010318 +name: obsolete iridophore +namespace: uberon/phenoscape-anatomy +def: "A pigment cell derived from the neural crest. The cell contains flat light-reflecting platelets, probably of guanine, in stacks called reflecting platets or iridisomes. The color-generating components produce a silver, gold, or iridescent color." [AAO:BJB] +synonym: "guanophore" RELATED [UBERON:3010318] +is_obsolete: true +replaced_by: CL:0000431 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010319 +name: obsolete melanocyte +namespace: uberon/phenoscape-anatomy +def: "A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance." [AAO:BJB] +synonym: "melonophore" RELATED [UBERON:3010319] +is_obsolete: true +replaced_by: CL:0000148 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010320 +name: obsolete xanthophore +namespace: uberon/phenoscape-anatomy +def: "A pigment cell derived from the neural crest. Contains cartenoid pigments in structures called pterinosomes or xanthosomes. This gives an appearance ranging from a golden yellow to orange and red." [AAO:BJB] +is_obsolete: true +replaced_by: CL:0000430 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010321 +name: obsolete podocyte +namespace: uberon/phenoscape-anatomy +def: "Cell type that is a component of the glomus." [AAO:BJB] +is_obsolete: true +replaced_by: CL:0000653 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010322 +name: obsolete stem cell +namespace: uberon/phenoscape-anatomy +def: "A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells." [AAO:BJB] +is_obsolete: true +replaced_by: CL:0000034 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010323 +name: obsolete hematopoietic stem cell +namespace: uberon/phenoscape-anatomy +def: "A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system." [AAO:BJB] +comment: false +synonym: "HSC" EXACT [UBERON:3010323] +is_obsolete: true +replaced_by: CL:0000037 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010324 +name: obsolete zygote +namespace: uberon/phenoscape-anatomy +def: "Diploid cell produced by the fusion of sperm cell nucleus and egg cell." [AAO:BJB] +synonym: "fertilized egg" EXACT [UBERON:3010324] +is_obsolete: true +replaced_by: CL:0000365 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010325 +name: animal hemisphere +namespace: uberon/phenoscape-anatomy +synonym: "animal" RELATED [UBERON:3010325] +is_obsolete: true +replaced_by: UBERON:0012284 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010326 +name: obsolete blastocoel anlage +namespace: uberon/phenoscape-anatomy +def: "The first appearance of the antomical space that will become the blastocoel." [XAO:curator] +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010328 +name: equatorial belt +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000479 ! tissue +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010329 +name: obsolete perivitelline space +namespace: uberon/phenoscape-anatomy +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010330 +name: obsolete sperm entry point +namespace: uberon/phenoscape-anatomy +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010331 +name: vegetal hemisphere +namespace: uberon/phenoscape-anatomy +is_obsolete: true +replaced_by: UBERON:0012285 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010333 +name: obsolete germ plasm +namespace: uberon/phenoscape-anatomy +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010334 +name: obsolete vegetal yolk mass +namespace: uberon/phenoscape-anatomy +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010346 +name: obsolete globe +namespace: uberon/phenoscape-anatomy +synonym: "eye ball" EXACT [UBERON:3010346] +is_obsolete: true +replaced_by: UBERON:0010230 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010350 +name: obsolete pigment layer +namespace: uberon/phenoscape-anatomy +comment: replaced with pigment epithelium of eye because was previously asserted to be part of a camera-type eye. +is_obsolete: true +replaced_by: UBERON:0007625 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010369 +name: obsolete branchial arch skeleton +namespace: uberon/phenoscape-anatomy +def: "Skeletal and cartilaginous elements of the branchial arches; the last five of the set of seven pharyngeal arches; the numbering system can be confusing; generally branchial arch #1 is the first branchial arch, or the third pharyngeal arch, but some authors do not follow this convention." [PMID:8589427] +synonym: "gill arch skeleton" RELATED [UBERON:3010369] +synonym: "Pharyngeal arch skeleton 3-7>" RELATED [UBERON:3010369] +synonym: "visceral arch skeleton" RELATED [UBERON:3010369] +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010377 +name: unicellular gland +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0003102 ! surface structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010379 +name: inner fin tissue +namespace: uberon/phenoscape-anatomy +def: "Part of the fin consisting of a supporting core of mesenchyme and extracellular matrix." [PMID:15188431] +synonym: "inner fin" BROAD [] +is_a: UBERON:0000479 ! tissue +disjoint_from: UBERON:3010380 ! outer fin tissue +relationship: part_of UBERON:0002415 ! tail +relationship: part_of UBERON:0008897 ! fin +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010380 +name: outer fin tissue +namespace: uberon/phenoscape-anatomy +def: "Part of the fin consisting of flattened epidermal cells elevated into a keel-like structure. " [PMID:15188431] +comment: In frogs (Anura) the outer fin tissue is present only in tadpoles and sometimes during the embryogenesis of species without tadpoles. In salamanders and caecilians tail fins can persist into reproductive maturity. +synonym: "outer fin" BROAD [] +synonym: "outer tail fin" RELATED [] +synonym: "tail fin" RELATED [] +is_a: UBERON:0000479 ! tissue +relationship: part_of UBERON:0002415 ! tail +relationship: part_of UBERON:0008897 ! fin +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010392 +name: mesonephric early proximal tubule +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0006553 ! renal duct +relationship: part_of UBERON:0000083 ! mesonephric tubule +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010393 +name: mesonephric late distal segment +namespace: uberon/phenoscape-anatomy +def: "The site of bicarbonate resorption in the adult kidney. It is equivalent to the convoluted distal segment of metanephric nephrons. [Xenbase]" [] +synonym: "DT1" EXACT [UBERON:3010393] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0000083 ! mesonephric tubule +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010394 +name: mesonephric late proximal tubule +namespace: uberon/phenoscape-anatomy +synonym: "late proximal segment" EXACT [UBERON:3010394] +synonym: "opisthonephros" RELATED [UBERON:3010394] +synonym: "proximal straight segment" RELATED [UBERON:3010394] +synonym: "proximal tubule 3" EXACT [UBERON:3010394] +synonym: "PT3" EXACT [UBERON:3010394] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0006553 ! renal duct +relationship: part_of UBERON:0000083 ! mesonephric tubule +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010398 +name: obsolete follicle layer +namespace: uberon/phenoscape-anatomy +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010404 +name: capillary system of liver +namespace: uberon/phenoscape-anatomy +def: "The smallest of the blood vessels, parts of the microcirculation, of the liver." [XAO:curator] +synonym: "liver capillary" EXACT [UBERON:3010404] +is_a: UBERON:0001982 ! capillary +is_a: UBERON:0015796 ! liver blood vessel +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010413 +name: left channel of ventral aorta +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0004573 ! systemic artery +relationship: part_of UBERON:0003085 ! ventral aorta +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010417 +name: posterior palatine artery +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0001637 ! artery +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010423 +name: larval aorta +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000947 ! aorta +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010424 +name: right channel of ventral aorta +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0004573 ! systemic artery +relationship: part_of UBERON:0003085 ! ventral aorta +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010428 +name: obsolete portion of +namespace: uberon/phenoscape-anatomy +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010431 +name: archenteron floor +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0004735 ! archenteron +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010432 +name: archenteron roof +namespace: uberon/phenoscape-anatomy +synonym: "gastrocoel roof" EXACT [UBERON:3010432] +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0004735 ! archenteron +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010436 +name: blastocoel roof +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0002050 ! embryonic structure +relationship: adjacent_to UBERON:0000090 ! blastocele +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010437 +name: post-anal gut +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: part_of UBERON:0004735 ! archenteron +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010447 +name: M. extensor digitorum communis longus +namespace: uberon/phenoscape-anatomy +def: "It arises on the lateral epicondyle of the humerus by two heads: the lateral one arises by a thin tendon in common with the m.extensor carpi ulnaris with fibers proximally fused. The internal one arises by a short tendon in common with proximally fused fibers of the m. extensor carpi radialis. It divides distally in two heads: the external head inserts with a long and thin tendon on the metacarpal V, at the same point of insertion of the m. abductor brevis dorsalis digiti V; the internal one inserts by a thin tendon on the proximal region of the metacarpal IV, between the m. extensor brevis superficialis digiti IV and the m. extensor brevis medius digiti IV (Pristimantis bogotensis)." [AAO:EJS] +is_a: UBERON:0010891 ! pectoral complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010449 +name: dorsal marginal zone +namespace: uberon/phenoscape-anatomy +def: "Marginal zone that is a key embryonic tissue region of the early gastrula stage embryo and that houses the Spemann-Mangold organizer." [ASD:BJB] +synonym: "DMZ" EXACT [PMID:17368611] +synonym: "organizer" RELATED [UBERON:3010449] +synonym: "Spemann organizer" RELATED [UBERON:3010449] +is_a: UBERON:0004879 ! marginal zone of embryo +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010450 +name: dorso-lateral marginal zone +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0004879 ! marginal zone of embryo +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010451 +name: involuting marginal zone +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0004879 ! marginal zone of embryo +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010452 +name: non-involuting marginal zone +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0004879 ! marginal zone of embryo +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010453 +name: ventral marginal zone +namespace: uberon/phenoscape-anatomy +synonym: "VMZ" EXACT [UBERON:3010453] +is_a: UBERON:0004879 ! marginal zone of embryo +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010454 +name: ventro-lateral marginal zone +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0004879 ! marginal zone of embryo +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010455 +name: blastopore lip +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0000100 ! blastopore +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010456 +name: lower blastopore lip +namespace: uberon/phenoscape-anatomy +synonym: "ventral blastopore lip" RELATED [UBERON:3010456] +is_a: UBERON:3010455 ! blastopore lip +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010457 +name: upper blastopore lip +namespace: uberon/phenoscape-anatomy +synonym: "dorsal blastopore lip" RELATED [UBERON:3010457] +synonym: "organizer" RELATED [UBERON:3010457] +is_a: UBERON:3010455 ! blastopore lip +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010458 +name: suprarostral ala +namespace: uberon/phenoscape-anatomy +synonym: "ala" BROAD [] +synonym: "alae" RELATED PLURAL [] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:3000998 ! suprarostral cartilage +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010463 +name: animal cap +namespace: uberon/phenoscape-anatomy +synonym: "animal ectoderm" RELATED [UBERON:3010463] +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0000924 ! ectoderm +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010464 +name: animal cap inner layer +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:3010463 ! animal cap +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010465 +name: animal cap outer layer +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:3010463 ! animal cap +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010489 +name: muscular artery +namespace: uberon/phenoscape-anatomy +def: "Part of the external carotid which delivers blood to the mm rectus cervicis and interhyoideus posterior." [AAO:BJB] +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001070 ! external carotid artery +relationship: supplies UBERON:3010654 ! rectus cervicis +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010494 +name: lateral pretrosal artery +namespace: uberon/phenoscape-anatomy +def: "Part of the internal carotid which supplies blood to the ear and branches to two additional arteries." [AAO:BJB] +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0020550 ! auricular blood vessel +relationship: part_of UBERON:0001532 ! internal carotid artery +relationship: supplies UBERON:0001690 ! ear +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010496 +name: mandibular artery +namespace: uberon/phenoscape-anatomy +def: "Part of lateral pretrosal artery which supplies blood to the roof of the mouth." [AAO:BJB] +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:3010494 ! lateral pretrosal artery +relationship: supplies UBERON:0007375 ! roof of mouth +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010498 +name: cutaneus artery +namespace: uberon/phenoscape-anatomy +def: "Artery which supplies blood to the thymus and parotoid region." [AAO:BJB] +is_a: UBERON:0001637 ! artery +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010499 +name: coeliaco-mesenteric artery +namespace: uberon/phenoscape-anatomy +def: "This artery has many branches which supply blood to various organs in the viscus." [AAO:BJB] +is_a: UBERON:0001637 ! artery +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010500 +name: gastrico-linealis +namespace: uberon/phenoscape-anatomy +def: "Major branch which supplies blood to the spleen and dorsal wall of the stomach." [AAO:BJB] +is_a: UBERON:0003509 ! arterial blood vessel +relationship: part_of UBERON:3010499 ! coeliaco-mesenteric artery +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010501 +name: duodeno-pancreatic artery +namespace: uberon/phenoscape-anatomy +def: "Major branch which supplies blood to pancreas and duodenum." [AAO:BJB] +is_a: UBERON:0001637 ! artery +relationship: part_of UBERON:3010499 ! coeliaco-mesenteric artery +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010502 +name: duodeno-hepatic artery +namespace: uberon/phenoscape-anatomy +def: "Major branch supplying blood via many smaller branches to the liver, duodenum, ventral wall of the stomach, and gall bladder." [AAO:BJB] +is_a: UBERON:0001637 ! artery +relationship: part_of UBERON:3010499 ! coeliaco-mesenteric artery +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010503 +name: oviduct artery +namespace: uberon/phenoscape-anatomy +def: "One of three arteries which are part of the renal artery supplying blood to the anterior, middle, and posterior parts of the oviduct." [AAO:BJB] +is_a: UBERON:0004573 ! systemic artery +relationship: part_of UBERON:0001184 ! renal artery +relationship: supplies UBERON:0000993 ! oviduct +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010506 +name: postcaval vein +namespace: uberon/phenoscape-anatomy +def: "One of three major veins which enter the sinus venosus." [AAO:BJB] +is_a: UBERON:0001638 ! vein +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010507 +name: precaval vein +namespace: uberon/phenoscape-anatomy +def: "Either of a pair of veins which enter on either side of the sinus venosus." [AAO:BJB] +is_a: UBERON:0001638 ! vein +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010515 +name: lateral vein +namespace: uberon/phenoscape-anatomy +def: "Either of the veins which collect blood from the trunk and skin and drain into the subclavian vein." [AAO:BJB] +is_a: UBERON:0001638 ! vein +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010516 +name: cutaneus magnus +namespace: uberon/phenoscape-anatomy +def: "Anterior part of the lateral vein." [AAO:BJB] +is_a: UBERON:0001638 ! vein +relationship: part_of UBERON:3010515 ! lateral vein +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010517 +name: ventral abdominal vein +namespace: uberon/phenoscape-anatomy +def: "A vein formed by the combination of veins in the pelvic region which collects blood from the liver, stomach, intestines, and gall bladder." [AAO:BJB] +is_a: UBERON:0001638 ! vein +relationship: part_of UBERON:0010194 ! hepatic portal system +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010519 +name: Jacobson's vein +namespace: uberon/phenoscape-anatomy +def: "Either of a pair of veins which receives many small vesicles from the kidney and collects blood from the oviducal vein." [AAO:BJB] +is_a: UBERON:0001638 ! vein +relationship: part_of UBERON:0010195 ! renal portal system +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010520 +name: oviducal vein +namespace: uberon/phenoscape-anatomy +def: "Vein which collects blood from the oviduct." [AAO:EJS] +is_a: UBERON:0001638 ! vein +relationship: part_of UBERON:0010195 ! renal portal system +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010523 +name: M. plantaris longus +namespace: uberon/phenoscape-anatomy +def: "Originates by two heads, one from the dorso-distal border of the aponeurosis covering the knee and the other from two tendinous branches along the medial border of the knee joint. Inserts by a thick, broad tendon to form the aponeurosis plantaris." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010524 +name: bronchial tube +namespace: uberon/phenoscape-anatomy +def: "Either of the short tubes which bifurcate posteriorly from the trachea and lead into the lungs." [AAO:BJB] +is_a: UBERON:0000489 ! cavitated compound organ +relationship: part_of UBERON:0001004 ! respiratory system +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010525 +name: frontoparietal fenestra +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000051 ! braincase and otic capsule opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010528 +name: articular process of palatoquadrate +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0004752 ! palatoquadrate cartilage +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010529 +name: ovisac +namespace: uberon/phenoscape-anatomy +alt_id: UBERON:3010782 +def: "Part of the ovary consisting of a thin sheath of connective tissue enclosing the ovarian follicles." [AAO:BJB] +is_a: UBERON:0002384 ! connective tissue +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0000992 ! ovary +relationship: part_of UBERON:0000993 ! oviduct +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010530 +name: obsolete mesorchium +namespace: uberon/phenoscape-anatomy +def: "A thin membrane which attaches the testes to the kidneys and supports the efferent ductules from the testes to the kidneys." [AAO:BJB] +is_obsolete: true +replaced_by: UBERON:0011879 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010538 +name: obsolete pars nervosa +def: "Region of the neurohypophysis which secretes neurohypophyseal hormones, regulating water loss and salt balance." [AAO:BJB] +is_obsolete: true +replaced_by: UBERON:0003217 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010541 +name: median pars intermedia +namespace: uberon/phenoscape-anatomy +def: "Region of the adenohypophysis which secretes melanophore-stimulating hormone, affecting the integumentary chromatophores." [AAO:BJB] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0002196 ! adenohypophysis +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010543 +name: obsolete bilateral pars tuberalis +namespace: uberon/phenoscape-anatomy +is_obsolete: true +replaced_by: UBERON:0002433 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010552 +name: obsolete gastrula cell +namespace: uberon/phenoscape-anatomy +def: "A cell of the embryo in the early stage following the blastula, characterized by morphogenetic cell movements, cell differentiation, and the formation of the three germ layers." [AAO:BJB] +is_obsolete: true +replaced_by: CL:0000361 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010553 +name: obsolete blastoderm cell +namespace: uberon/phenoscape-anatomy +def: "An undifferentiated cell produced by early cleavages of the fertilized egg (zygote)." [AAO:BJB] +is_obsolete: true +replaced_by: CL:0000353 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010554 +name: obsolete ectodermal cell +namespace: uberon/phenoscape-anatomy +def: "A cell of the outer of the three germ layers of the embryo." [AAO:BJB] +synonym: "ectoderm cell" RELATED [UBERON:3010554] +is_obsolete: true +replaced_by: CL:0000221 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010555 +name: obsolete endodermal cell +namespace: uberon/phenoscape-anatomy +def: "A cell of the inner of the three germ layers of the embryo." [AAO:BJB] +synonym: "endoderm cell" RELATED [UBERON:3010555] +is_obsolete: true +replaced_by: CL:0000223 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010556 +name: obsolete mesodermal cell +namespace: uberon/phenoscape-anatomy +def: "A cell of the middle germ layer of the embryo." [AAO:BJB] +synonym: "mesoblast" RELATED [UBERON:3010556] +synonym: "mesoderm cell" RELATED [UBERON:3010556] +is_obsolete: true +replaced_by: CL:0000222 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010557 +name: triangular process +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0004529 ! anatomical projection +relationship: part_of UBERON:3010138 ! trabecular horn +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010558 +name: quadrato-ethmoid ligament +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0011648 ! jaw muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010559 +name: retroarticular process of the palatoquadrate +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:4200139 ! palatoquadrate element +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010560 +name: anterior process of the palatoquadrate +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:4200139 ! palatoquadrate element +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010562 +name: suboccular foramen +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000051 ! braincase and otic capsule opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010563 +name: craniopalatine foramen +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000051 ! braincase and otic capsule opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010564 +name: carotid foramen +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000051 ! braincase and otic capsule opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010565 +name: pila preoptica +namespace: uberon/phenoscape-anatomy +def: "A strut of cartilage extending dorsally from the basal plate and with other similar cartilages forming the sides of the brain case. Posterior to the pila preoptica is the pila antoptica between these two cartilages emerges the optic and trochlear nerves." [] +is_a: UBERON:0003932 ! cartilage element of chondrocranium +relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010566 +name: prootic foramen +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000051 ! braincase and otic capsule opening +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010576 +name: prenasal (amphibians) +namespace: uberon/phenoscape-anatomy +def: "A dermal bone that forms anterior to the premaxillae between the maxillae and articulates with the nasals posteriorly." [AAO:LT] +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010583 +name: basibranchial I +namespace: uberon/phenoscape-anatomy +def: "Bilaterally unpaired ventral element with which articulates with lateral paired elements." [AAO:DBW] +synonym: "Copula I" RELATED [UBERON:3010583] +is_a: UBERON:0004740 ! basibranchial bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010584 +name: mandibular arch neural crest +namespace: uberon/phenoscape-anatomy +def: "Anterior most migratory stream of cranial neural crest." [AAO:EJS] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004529 ! anatomical projection +relationship: part_of UBERON:0003099 ! cranial neural crest +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010585 +name: basibranchial II +namespace: uberon/phenoscape-anatomy +def: "Unpaired medial element that articulates with the anterior basibrachial I (if present)." [AAO:EJS] +synonym: "Copula II" RELATED [UBERON:3010585] +synonym: "urohyal" RELATED [UBERON:3010585] +is_a: UBERON:0004740 ! basibranchial bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010586 +name: vasa efferentia +namespace: uberon/phenoscape-anatomy +def: "Sperm travel through these 4 or 5 fine ducts which pass through the mesorchium from the testis to the sexual kidney." [AAO:BMZ] +is_a: UBERON:0006946 ! efferent duct +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010587 +name: hyoid arch neural crest +namespace: uberon/phenoscape-anatomy +def: "Population of cranial neural crest that give rise to hyoid arch elements." [AAO:EJS] +is_a: UBERON:0002342 ! neural crest +relationship: part_of UBERON:0003099 ! cranial neural crest +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010589 +name: cloacal papilla +namespace: uberon/phenoscape-anatomy +def: "A small, ridge-like projection from the antero-ventral wall of the cloacal chamber." [AAO:BMZ] +is_a: UBERON:0000479 ! tissue +relationship: part_of UBERON:0000162 ! cloaca +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010590 +name: amphibian cloacal gland +namespace: uberon/phenoscape-anatomy +def: "A structure that surrounds the cloacal opening, consisting of a mass of coarse tubules." [AAO:BMZ] +is_a: UBERON:0012478 ! cloacal gland +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010593 +name: obsolete erythrophore +namespace: uberon/phenoscape-anatomy +comment: Note that this class originally had axiom that it was part of the integument. However, the term had no definition and one can use the general erythrophore def from CL. +is_obsolete: true +replaced_by: CL:0000574 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010599 +name: stratum spongiosum +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0002067 ! dermis +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010602 +name: granular gland +namespace: uberon/phenoscape-anatomy +def: "A gland that contains toxic secretions within the lumen. In frogs and salamanders, this is the larger of the two types of gland, the other being the mucuous gland[Kardong]" [ISBN10:0073040584, UBERON:cjm] +synonym: "poison gland" BROAD [ISBN10:0073040584, UBERON:cjm] +is_a: UBERON:0002530 ! gland +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010603 +name: body gland +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000977 ! body external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010604 +name: cranial glands +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000972 ! head external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010606 +name: limb gland +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000981 ! limb external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010612 +name: obsolete sensory receptors +namespace: uberon/phenoscape-anatomy +is_obsolete: true +replaced_by: UBERON:0012451 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010613 +name: laryngo-tracheal chamber +namespace: uberon/phenoscape-anatomy +def: "Muscular vestibule between the pharynx and lungs, lying between the posterior cornua of the hyoid." [AAO:BMZ] +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0001737 ! larynx +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010614 +name: cartilago lateralis of aryngo-tracheal chamber +namespace: uberon/phenoscape-anatomy +def: "A series of semicircular cartilages on the side of the laryngo-tracheal chamber." [AAO:BMZ] +synonym: "cartilago lateralis" BROAD [] +is_a: UBERON:0007844 ! cartilage element +relationship: located_in UBERON:3010613 ! laryngo-tracheal chamber +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010618 +name: constrictor laryngis externus +namespace: uberon/phenoscape-anatomy +def: "Involved in the movement of the arytenoid cartilages." [AAO:BMZ] +synonym: "hyolaryngus" RELATED [UBERON:3010618] +synonym: "sphincter anterior" RELATED [UBERON:3010618] +is_a: UBERON:3000224 ! hyobranchial muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010620 +name: dilatator laryngis +namespace: uberon/phenoscape-anatomy +def: "Involved in the movement of the arytenoid cartilages." [AAO:BMZ] +is_a: UBERON:3000224 ! hyobranchial muscle +relationship: has_muscle_insertion UBERON:0001740 ! arytenoid cartilage +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010621 +name: constrictor laryngis anterior +namespace: uberon/phenoscape-anatomy +def: "Involved in the movement of the arytenoid cartilages." [AAO:BMZ] +synonym: "sphincter posterior" RELATED [UBERON:3010621] +is_a: UBERON:3000224 ! hyobranchial muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010624 +name: subarticular sesamoid +namespace: uberon/phenoscape-anatomy +alt_id: UBERON:3010674 +def: "Is an endochondral structure located on the ventral to the junction between, in the hand, the metacarpal and most proximal phalanx of the digit and between phalanges, and in the foot between the metatarsal and most proximal phalanx of the digit and between phalanges. Typically subarticular sesamoids are found with the subarticular tubercles." [] +comment: to edit more later +synonym: "subarticular sesamoids" RELATED [] +is_a: UBERON:0001479 ! sesamoid bone +is_a: UBERON:0011141 ! appendicular ossicle +is_a: UBERON:0012357 ! digitopodium bone +relationship: part_of UBERON:0002544 ! digit +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010625 +name: obsolete embryonic hypochord +namespace: uberon/phenoscape-anatomy +def: "A transient rod-like structure ventral to the notochord in salamander embryos. Derived from endoderm." [AAO:EJS] +is_obsolete: true +replaced_by: UBERON:0003058 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010626 +name: obsolete Merkel cell +namespace: uberon/phenoscape-anatomy +synonym: "Merkel cells" RELATED [UBERON:3010626] +is_obsolete: true +replaced_by: CL:0000242 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010627 +name: obsolete leydig cells +namespace: uberon/phenoscape-anatomy +def: "A type of mucus and/or fluid secreting cell in larvae." [AAO:BMZ] +is_obsolete: true +replaced_by: CL:0000178 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010628 +name: obsolete dorsal ramus of occulomotor nerve +namespace: uberon/phenoscape-anatomy +def: "Innervates m. rectus superior (m. dorsal rectus)." [AAO:EJS] +is_obsolete: true +replaced_by: UBERON:0015162 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010629 +name: obsolete sesamoid +namespace: uberon/phenoscape-anatomy +alt_id: UBERON:3010630 +is_obsolete: true +replaced_by: UBERON:0001479 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010631 +name: obsolete Stiftchenzellen +namespace: uberon/phenoscape-anatomy +def: "Possibly chemoreceptor cells in anuran larvae." [AAO:BMZ] +comment: replace with CL_0007017 once CL is released. +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010632 +name: obsolete ventral ramus of occulomotor nerve +namespace: uberon/phenoscape-anatomy +def: "Innervates m. rectus medialis, m. rectus inferior, m. obliquus inferior." [AAO:DSM] +is_obsolete: true +replaced_by: UBERON:0015161 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010633 +name: obsolete flask cell +namespace: uberon/phenoscape-anatomy +def: "Type of cell that appears in epidermis during metamorphosis and is rich in mitochondria." [AAO:BMZ] +comment: replaced by CL_0007023 once cl is released. +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010635 +name: obsolete goblet cell +namespace: uberon/phenoscape-anatomy +def: "A mucous surface cell type known in tadpoles of Xenopus." [AAO:BMZ] +is_obsolete: true +replaced_by: CL:0000160 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010636 +name: egg capsule +namespace: uberon/phenoscape-anatomy +def: "Protective membranes that surround amphibian embryos." [AAO:EJS] +is_a: UBERON:0000476 ! acellular anatomical structure +is_a: UBERON:0000478 ! extraembryonic structure +relationship: produced_by UBERON:0000993 ! oviduct +relationship: surrounds UBERON:0007379 ! shelled egg +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010637 +name: obsolete mucous surface cell +namespace: uberon/phenoscape-anatomy +def: "Type of mucous-producing cell that appears in early larval stages and persists after metamorphosis." [AAO:BMZ] +comment: replace with CL_0007019 once cl is released. +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010638 +name: obsolete ciliary cell +namespace: uberon/phenoscape-anatomy +def: "A type of cell that develops in embryos and functions in embryonic movements." [AAO:BMZ] +comment: replace with CL_0007018 once cl is released. +synonym: "ciliary cells" RELATED [UBERON:3010638] +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010650 +name: cephalodorsosubpharyngeus +namespace: uberon/phenoscape-anatomy +def: "One of the principal muscles used in swallowing." [AAO:BMZ] +is_a: UBERON:3000224 ! hyobranchial muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010651 +name: levator bulbi +namespace: uberon/phenoscape-anatomy +def: "One of the principal muscles used in swallowing." [AAO:BMZ] +is_a: UBERON:3000224 ! hyobranchial muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010652 +name: ramules nasalis lateralis +namespace: uberon/phenoscape-anatomy +def: "First branch gives rise to two ramules that border the naris and innervate the surrounding tissue." [AAO:EJS] +is_a: UBERON:0011779 ! nerve of head region +relationship: part_of UBERON:0000348 ! ophthalmic nerve +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010653 +name: ramus nasalis medialis +namespace: uberon/phenoscape-anatomy +def: "First branch gives rise to two ramules that border the naris and innervate the surrounding tissue." [AAO:EJS] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004529 ! anatomical projection +relationship: part_of UBERON:0000348 ! ophthalmic nerve +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010654 +name: rectus cervicis +namespace: uberon/phenoscape-anatomy +def: "Retracts the hyoid and, therefore, the tongue." [AAO:BMZ] +is_a: UBERON:3000224 ! hyobranchial muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010657 +name: subhyoideus +namespace: uberon/phenoscape-anatomy +def: "Deep, visceral muscle associated with tongue movement." [AAO:BMZ] +is_a: UBERON:3000224 ! hyobranchial muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010659 +name: subarcualis rectus I +namespace: uberon/phenoscape-anatomy +def: "Deep, visceral muscle associated with tongue movement." [AAO:BMZ] +is_a: UBERON:3000224 ! hyobranchial muscle +relationship: innervated_by UBERON:3010726 ! ramus muscularis of glossopharyngeus nerve +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010661 +name: ramus nasalis internus +namespace: uberon/phenoscape-anatomy +def: "Distal part of the opthalmicus profundus gives rise to 2 ramules: palatinus and cutaneous." [AAO:EJS] +is_a: UBERON:0000348 ! ophthalmic nerve +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010664 +name: m. intertransversarius capitus superior +namespace: uberon/phenoscape-anatomy +def: "Involved in the movement of the head." [AAO:BMZ] +is_a: UBERON:0004465 ! musculature of neck +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010665 +name: ramule palatinus +namespace: uberon/phenoscape-anatomy +def: "Ramules that descends towards the buccal roof and give rise to several short branches that anastomose with palatine ramus of the facial nerve." [AAO:EJS] +is_a: UBERON:3010661 ! ramus nasalis internus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010667 +name: m. intertransversarius capitis inferior +namespace: uberon/phenoscape-anatomy +def: "Involved in the movement of the head." [AAO:BMZ] +is_a: UBERON:0004465 ! musculature of neck +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010668 +name: ramules cutaneous +namespace: uberon/phenoscape-anatomy +alt_id: UBERON:3010672 +def: "Many branches of the maxillary ramus that terminate in the integument of the maxillary region." [AAO:EJS] +is_a: UBERON:0011779 ! nerve of head region +relationship: part_of UBERON:0000377 ! maxillary nerve +relationship: part_of UBERON:3010661 ! ramus nasalis internus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010669 +name: trunk maxillary-mandibularis +namespace: uberon/phenoscape-anatomy +def: "Portion of the trigeminal nerve where the maxillary and mandibular rami run together prior to bifurcating." [AAO:EJS] +is_a: UBERON:0011779 ! nerve of head region +relationship: branching_part_of UBERON:0001645 ! trigeminal nerve +relationship: part_of UBERON:0001645 ! trigeminal nerve +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010671 +name: ramule palatonasalis +namespace: uberon/phenoscape-anatomy +def: "Descends and branches to the buccal roof where it anastomoses with the palatine ramus of the facial nerve." [AAO:EJS] +is_a: UBERON:0000479 ! tissue +relationship: part_of UBERON:0000377 ! maxillary nerve +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010673 +name: m. rhomboideus anterior +namespace: uberon/phenoscape-anatomy +def: "Muscle which originates on the posterior surface of the frontoparietal and the anterior part of the dorsal fascia. Inserts on the ventral surface of the anteromedial corner of the suprascapula." [AAO:MEJ] +is_a: UBERON:0010891 ! pectoral complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010675 +name: bony nodule of terminal phalanx of hind digit +namespace: uberon/phenoscape-anatomy +def: "Endochondral element distal to terminal phalanx of hind digit." [AAO:EJS] +synonym: "bony nodule" BROAD [] +is_a: UBERON:0004248 ! pedal digit bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010682 +name: proximal-most prepollical element +namespace: uberon/phenoscape-anatomy +def: "Is the proximal-most prepollical element. " [] +is_a: UBERON:4200140 ! prepollical element +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010683 +name: distal-most prepollical element +namespace: uberon/phenoscape-anatomy +def: "Is the distal-most prepollical element." [] +is_a: UBERON:4200140 ! prepollical element +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010684 +name: proximal-most prehallical element +namespace: uberon/phenoscape-anatomy +is_a: UBERON:4200141 ! prehallical element +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010685 +name: distal-most prehallical element +namespace: uberon/phenoscape-anatomy +is_a: UBERON:4200141 ! prehallical element +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010690 +name: fetal tooth +namespace: uberon/phenoscape-anatomy +def: "Type of deciduous dentition found in foetuses and altricial juveniles of some caecilians." [AAO:HM] +synonym: "fetal teeth" EXACT [UBERON:3010690] +is_a: UBERON:0007115 ! deciduous tooth +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010691 +name: m. opercularis +namespace: uberon/phenoscape-anatomy +def: "Muscle which arises from the dorsal m. levator scapulae and extends between the operculum and suprascapula." [AAO:MEJ] +is_a: UBERON:0010891 ! pectoral complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010692 +name: m. cucullaris +namespace: uberon/phenoscape-anatomy +def: "Muscle which originates on the prootic and the otic ramus of the squamosal and inserts on the anterior border of the suprascapula." [AAO:MEJ] +is_a: UBERON:0010891 ! pectoral complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010693 +name: ramus posterior profundus of V3 +namespace: uberon/phenoscape-anatomy +def: "In the adult anuran, this innervates the muscles levator mandibulare internus and longus." [AAO:EJS] +is_a: UBERON:0004529 ! anatomical projection +relationship: part_of UBERON:0000375 ! mandibular nerve +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010694 +name: m. rhomboideus posterior +namespace: uberon/phenoscape-anatomy +def: "Muscle which originates from the transverse process of presacral vertebrae IV and insert on the dorso-medial surface of the suprascapula." [AAO:MEJ] +is_a: UBERON:0010891 ! pectoral complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010695 +name: m. serratus superior +namespace: uberon/phenoscape-anatomy +def: "Muscle which originates from the transverse process of presacral vertebrae IV and inserts on the dorso-medial surface of the suprascapula beneath the insertion M. rhomboideus posterior." [AAO:MEJ] +is_a: UBERON:0010891 ! pectoral complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010698 +name: m. serratus medius +namespace: uberon/phenoscape-anatomy +def: "Muscle which originates from the transverse process of presacral vertebrae III and inserts on the central and medial surface of the suprascapula." [AAO:MEJ] +is_a: UBERON:0010891 ! pectoral complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010699 +name: m. serratus inferior +namespace: uberon/phenoscape-anatomy +def: "Muscle which originates as a posterior and anterior head. The posterior head originates from the transverse process and cartilaginous epiphysis of presacral vertebra IV. The anterior head originates on the same parts of presacral vertebrae III. Both insert on the medial surface of the suprascapula near its postero-ventral edge." [AAO:MEJ] +is_a: UBERON:0010891 ! pectoral complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010700 +name: levator mandibulae externus +namespace: uberon/phenoscape-anatomy +def: "Responsible for the closing of the jaw." [AAO:BMZ] +is_a: UBERON:0011648 ! jaw muscle +is_a: UBERON:0018544 ! trigeminal nerve muscle +relationship: innervated_by UBERON:0000375 ! mandibular nerve +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010701 +name: m. latissimus dorsi +namespace: uberon/phenoscape-anatomy +def: "Muscle which originates from the ventral surface of the dorsal fascia and inserts on the deltoid crest of the humerus." [AAO:MEJ] +is_a: UBERON:0010891 ! pectoral complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010704 +name: levator mandibulae longus +namespace: uberon/phenoscape-anatomy +def: "Responsible for the closing of the jaw." [AAO:BMZ] +is_a: UBERON:0011648 ! jaw muscle +relationship: innervated_by UBERON:3010693 ! ramus posterior profundus of V3 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010705 +name: obsolete lateral line receptor +namespace: uberon/phenoscape-anatomy +is_obsolete: true +replaced_by: UBERON:0008904 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010706 +name: lateral line nucleus +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0002540 ! lateral line system +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010707 +name: m. dorsalis scapulae +namespace: uberon/phenoscape-anatomy +def: "Muscle which originates on the lateral surface of the suprascapulae and inserts on the deltoid crest of the humerus." [AAO:MEJ] +is_a: UBERON:0010891 ! pectoral complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010708 +name: levator mandibulae articularis +namespace: uberon/phenoscape-anatomy +def: "Muscle which is responsible for the closing of the jaw." [AAO:BMZ] +synonym: "m. adductor mandibulae anterior articularis" RELATED [UBERON:3010708] +synonym: "m. adductor mandibulae externus minor" RELATED [UBERON:3010708] +synonym: "m. adductor mandibulae posterior" RELATED [UBERON:3010708] +synonym: "m. adductor mandibulae posterior articularis" RELATED [UBERON:3010708] +is_a: UBERON:0011648 ! jaw muscle +is_a: UBERON:0018544 ! trigeminal nerve muscle +relationship: innervated_by UBERON:0000375 ! mandibular nerve +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010709 +name: levator mandibulae lateralis +namespace: uberon/phenoscape-anatomy +def: "Responsible for the closing of the jaw." [AAO:BMZ] +synonym: "m. adductor mandibulae posterior articularis" RELATED [UBERON:3010709] +is_a: UBERON:0011648 ! jaw muscle +is_a: UBERON:0018544 ! trigeminal nerve muscle +relationship: innervated_by UBERON:0000375 ! mandibular nerve +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010710 +name: m. interscapularis +namespace: uberon/phenoscape-anatomy +def: "Muscle which originates from the ventro-medial surface of the suprascapula and inserts on the ventral surface of the scapula." [AAO:MEJ] +is_a: UBERON:0010891 ! pectoral complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010711 +name: levator mandibulae externus superficialis +namespace: uberon/phenoscape-anatomy +def: "Responsible for the closing of the jaw." [AAO:BMZ] +is_a: UBERON:0011648 ! jaw muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010712 +name: levator mandibulae externus profundus +namespace: uberon/phenoscape-anatomy +def: "Muscle which is responsible for the closing of the jaw." [AAO:BMZ] +is_a: UBERON:0011648 ! jaw muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010713 +name: m. sternoepicoracoideus +namespace: uberon/phenoscape-anatomy +def: "Muscle which originates on the anterior border of the distal part of the sternal horn and inserts antero-medially on the postero-dorsal surface of the epicoracoid cartilage." [AAO:MEJ] +is_a: UBERON:0010891 ! pectoral complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010719 +name: dilated medial process of metacarpal IV +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0003648 ! metacarpal bone of digit 4 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010720 +name: ramus hyomandibularis +namespace: uberon/phenoscape-anatomy +def: "The posttrematic branch of the facial nerve, both motor and sensory in function." [AAO:CAM] +is_a: UBERON:0004529 ! anatomical projection +relationship: part_of UBERON:0001647 ! facial nerve +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010721 +name: limb villosities +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3000981 ! limb external integument structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010722 +name: ramus palatinus +namespace: uberon/phenoscape-anatomy +def: "Sensory branch of facial nerve from palatal region." [AAO:CAM] +is_a: UBERON:0001647 ! facial nerve +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010724 +name: levator quadrati +namespace: uberon/phenoscape-anatomy +def: "Responsible for the closing of the jaw." [AAO:BMZ] +is_a: UBERON:0011648 ! jaw muscle +is_a: UBERON:0018544 ! trigeminal nerve muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010725 +name: M. coracoradialis +namespace: uberon/phenoscape-anatomy +def: "Muscle which originates from the omosternum and epicoracoid cartilage and inserts on the proximal radioulna." [AAO:MEJ] +is_a: UBERON:0010891 ! pectoral complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010726 +name: ramus muscularis of glossopharyngeus nerve +namespace: uberon/phenoscape-anatomy +def: "Branchiomotor branch of the glossopharyngeus nerve innervating the m. subarcuales rectus I." [AAO:EJS] +is_a: UBERON:0000479 ! tissue +relationship: innervates UBERON:3010659 ! subarcualis rectus I +relationship: part_of UBERON:0001649 ! glossopharyngeal nerve +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010728 +name: otic opercular element +namespace: uberon/phenoscape-anatomy +def: "Round, flat bone or cartilage that lies in the fenestra ovalis and articulates with the columella." [AAO:DBW] +synonym: "otic operculum" EXACT [] +is_a: UBERON:0007844 ! cartilage element +relationship: part_of UBERON:0001690 ! ear +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010729 +name: M. coracobrachialis longus +namespace: uberon/phenoscape-anatomy +def: "Muscle which originates as a long belly from the dorsal coracoid near the sternum and inserts on the shaft of the humerus." [AAO:MEJ] +is_a: UBERON:0010891 ! pectoral complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010731 +name: M. coracobrachialis brevis +namespace: uberon/phenoscape-anatomy +def: "Muscle which originates on the dorsal surface of the coracoid and scapula and inserts on the deltoid crest of the humerus." [AAO:MEJ] +is_a: UBERON:0010891 ! pectoral complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010734 +name: M. flexor carpi ulnaris +namespace: uberon/phenoscape-anatomy +def: "Muscle which originates from the medial condyle of the humerus and inserts on the carpus." [AAO:MEJ] +is_a: UBERON:0010891 ! pectoral complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010735 +name: ramus anterior of CN VIII +namespace: uberon/phenoscape-anatomy +def: "Formed by fibers from the anterior semicircular canal and sacculus." [AAO:EJS] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001648 ! vestibulocochlear nerve +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010736 +name: ramus posterior of CN VIII +namespace: uberon/phenoscape-anatomy +def: "Composed of two rami: a short ventral ramus innervating the cochlea (lagena and papille basilar), and a long dorsal ramus innervating the posterior semicircular canal." [AAO:EJS] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001648 ! vestibulocochlear nerve +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010737 +name: M. palmaris longus +namespace: uberon/phenoscape-anatomy +def: "Originates from the medial epicondyle of the humerus and inserts on the palmar aponeurosis." [AAO:EJS] +is_a: UBERON:0010891 ! pectoral complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010738 +name: M. palmaris profundis +namespace: uberon/phenoscape-anatomy +def: "Originates on the ulnar aspect of the radioulna and inserts on the palmar aponeurosis." [AAO:EJS] +is_a: UBERON:0010891 ! pectoral complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010739 +name: M. flexor antibrachii medialis +namespace: uberon/phenoscape-anatomy +def: "Originates on the medial epicondyle of the humerus and inserts on the radial aspect of the radioulna." [AAO:EJS] +is_a: UBERON:0010891 ! pectoral complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010740 +name: ramus auricularis of the vagus nerve +namespace: uberon/phenoscape-anatomy +def: "An afferent branch of the vagus nerve." [AAO:EJS] +is_a: UBERON:0001759 ! vagus nerve +relationship: innervates UBERON:0002218 ! tympanic ring +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010741 +name: M. ulnocarpalis +namespace: uberon/phenoscape-anatomy +def: "Originates along distal third of the ulna and inserts on the ulnare." [AAO:EJS] +is_a: UBERON:0010891 ! pectoral complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010742 +name: interhyoideus posterior +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0011648 ! jaw muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010743 +name: M. flexor antibrachii lateralis superficialis +namespace: uberon/phenoscape-anatomy +def: "Originates as a superior and inferior head. The superior head originates on the outer edge of the humerus and the inferior head originates on the lateral epicondyle of the humerus. Both bellies converge to form a tendon, which inserts on the carpus and the extensor tendon of digit I." [AAO:EJS] +is_a: UBERON:0010891 ! pectoral complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010744 +name: M. flexor antibrachii lateralis profundus +namespace: uberon/phenoscape-anatomy +def: "Originates on the lateral epicondyle of the humerus and inserts on the lower ridge of the radioulna." [AAO:EJS] +is_a: UBERON:0010891 ! pectoral complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010745 +name: M. coccygeosacralis +namespace: uberon/phenoscape-anatomy +def: "Originates on the lateral surface of the urostyle and inserts on the neural arch of the sacrum or on the sacral diapophysis." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010746 +name: T-shaped terminal phalanx +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0004300 ! distal phalanx +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010747 +name: submentalis +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0011648 ! jaw muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010748 +name: M. coccygeoiliacus +namespace: uberon/phenoscape-anatomy +def: "Originates on the lateral surface of the urostyle and passes ventral to the sacral diapophysis to insert on the anterior and medial surfaces of the ilial shaft." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010749 +name: M. iliolumbaris +namespace: uberon/phenoscape-anatomy +def: "Originates on the anterior and lateral aspect of the ilial shaft and inserts on the transverse processes of presacral vertebrae IV-VII." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010750 +name: descending branch of the vagus nerve +namespace: uberon/phenoscape-anatomy +def: "Major branch of the vagus supplying parasympathetic innervation to viscera." [AAO:EJS] +is_a: UBERON:0000479 ! tissue +relationship: part_of UBERON:0000011 ! parasympathetic nervous system +relationship: part_of UBERON:0001759 ! vagus nerve +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010751 +name: ramus muscularis of vagus nerve +namespace: uberon/phenoscape-anatomy +def: "Motor nervous branch of the vagus innervating m. subarcualis rectus I." [AAO:CAM] +is_a: UBERON:0000479 ! tissue +relationship: innervates UBERON:3010659 ! subarcualis rectus I +relationship: part_of UBERON:3010754 ! ramus recurrens +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010752 +name: obsolete lobe +namespace: uberon/phenoscape-anatomy +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010754 +name: ramus recurrens +namespace: uberon/phenoscape-anatomy +def: "Branch of the vagus nerve that separates from the vagus well postcranially, then continues anteriorly to innervate the larynx." [AAO:EJS] +is_a: UBERON:0004529 ! anatomical projection +relationship: part_of UBERON:0001759 ! vagus nerve +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010757 +name: ramus superficial ophthalmic +namespace: uberon/phenoscape-anatomy +def: "Dorsal branch of ADLLN that innervates supraorbital line of neuromasts." [AAO:EJS] +is_a: UBERON:3010105 ! anterodorsal lateral line nerve (ADLLN) +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010758 +name: M. coccygeocutaneus +namespace: uberon/phenoscape-anatomy +def: "Originates from the posterior tip of the urostyle and inserts on the cloacal musculature and the overlying skin." [AAO:EJS] +is_a: UBERON:0010890 ! pelvic complex muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010759 +name: ramus buccal +namespace: uberon/phenoscape-anatomy +def: "Ventral ramus of the ADLLN that innervates the infraorbital line of neuromasts." [AAO:EJS] +is_a: UBERON:3010105 ! anterodorsal lateral line nerve (ADLLN) +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010764 +name: laryngeus ventralis +namespace: uberon/phenoscape-anatomy +def: "A branch of the vagus nerve innervating heart, stomach, and lung muscle." [AAO:CAM] +is_a: UBERON:0011779 ! nerve of head region +relationship: innervates UBERON:0000945 ! stomach +relationship: innervates UBERON:0000948 ! heart +relationship: innervates UBERON:0002048 ! lung +relationship: part_of UBERON:3010754 ! ramus recurrens +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010765 +name: ramus mandibularis externus +namespace: uberon/phenoscape-anatomy +def: "Runs together with motor fibers of the hyomandibular trunk of VII. The mandibularis externus of AVLLN branches into three ramules ." [AAO:SIQ] +is_a: UBERON:3010109 ! anteroventral lateral line nerve (AVLLN) +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010770 +name: dorsal sympathetic chain +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000407 ! sympathetic trunk +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010771 +name: ventral sympathetic chain +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000407 ! sympathetic trunk +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010772 +name: M. dorsalis trunci +namespace: uberon/phenoscape-anatomy +def: "Originates on the postero-dorsal edge of the postzygopophyses and insert on the dorsal surface of the neural arch of the posterior, adjacent vertebra." [AAO:EJS] +is_a: UBERON:0008778 ! epaxial musculature +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010778 +name: jugal ramule +namespace: uberon/phenoscape-anatomy +def: "This ramule innervates the jugal line of neuromasts and is the dorsal branch of the ramus mandibularis externus." [AAO:SIQ] +is_a: UBERON:3010765 ! ramus mandibularis externus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010780 +name: pars recta +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0000993 ! oviduct +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010781 +name: pars convoluta of oviduct +namespace: uberon/phenoscape-anatomy +synonym: "pars convoluta" BROAD [] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0000993 ! oviduct +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010783 +name: m. oblique externus +namespace: uberon/phenoscape-anatomy +def: "Originates on the posterior margin of the suprascapula and the epaxial fascia and inserts ventrally on the lateral fascia of the M. rectus abdominus and the ilial shaft." [AAO:MEJ] +is_a: UBERON:0008777 ! hypaxial musculature +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010784 +name: m. oblique internus +namespace: uberon/phenoscape-anatomy +def: "A muscular sheet in which the fibers run in right angles to those of the m. oblique externus, slanting downward anteriorly. This is one of three sheets composing the flank musculature." [AAO:BJB] +is_a: UBERON:0008777 ! hypaxial musculature +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010785 +name: m. transversus +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0008777 ! hypaxial musculature +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010786 +name: pars subvertebralis +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0008777 ! hypaxial musculature +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010787 +name: pars transversalis +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0008777 ! hypaxial musculature +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010790 +name: muscle rectus abdominis superficialis +namespace: uberon/phenoscape-anatomy +def: "A component of the rectus abdominal muscle that is some taxa." [] +is_a: UBERON:0002461 ! anterior abdominal wall muscle +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0002382 ! rectus abdominis muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010792 +name: musculus rectus abdominis profundus +namespace: uberon/phenoscape-anatomy +def: "A component of the rectus abdominal muscle that is some taxa (see comment) forms a disctinct and separate muscle." [] +comment: In salamanders (Caudata) the m. rectus abdominis profundus is sometimes continuous with the m. rectus cervicis profundus. In extreme cases (family Plethodontidae) represents an undivided muscle that arises from the psoterior border of the ischium that proceds uninterrupted to the tongue pad. +is_a: UBERON:0002461 ! anterior abdominal wall muscle +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0002382 ! rectus abdominis muscle +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010793 +name: m. ypsiloideus anterior +namespace: uberon/phenoscape-anatomy +def: "Hypaxial muscle in which contraction elevates the ypsiloid cartilage; originates from the anterior edge of the lateral process of the ypsiloid cartilage and insert on the anteriorly adjacent inscription." [AAO:BMZ] +is_a: UBERON:0008777 ! hypaxial musculature +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010794 +name: oral ramule +namespace: uberon/phenoscape-anatomy +def: "Medial branch of the ramus mandibularis externus. This ramule innervates the oral and angular lines of neuromasts." [AAO:EJS] +is_a: UBERON:3010765 ! ramus mandibularis externus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010795 +name: preopercular ramule +namespace: uberon/phenoscape-anatomy +def: "Ventral branch of the ramus mandibularis externus. This ramule have a superior and an inferior division, both innervating the preopercular line of neuromasts." [AAO:EJS] +is_a: UBERON:3010765 ! ramus mandibularis externus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010796 +name: ramus supraotic +namespace: uberon/phenoscape-anatomy +def: "Small ramus of the MLLN that innervates neuromasts located at the posterior margin of the otic capsule." [AAO:SIQ] +is_a: UBERON:3010126 ! middle lateral line nerve (MLLN) +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010797 +name: m. ypsiloideus posterior +namespace: uberon/phenoscape-anatomy +def: "Contraction depresses the ypsiloid cartilage; arises from the anterodorsal edge of the pubis deep to the m. rectus abdominis profundus and spreads anteriorly in a fan shape to insert on the lateral edges of the shaft and the posterior edges of the lateral processes of the ypsiloid cartilage ." [AAO:BMZ] +is_a: UBERON:0008777 ! hypaxial musculature +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010798 +name: ramulus suprabranchialis anterior +namespace: uberon/phenoscape-anatomy +def: "Ramulus that innervates the suprabranchial line of neuromasts." [AAO:SIQ] +is_a: UBERON:3010126 ! middle lateral line nerve (MLLN) +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010799 +name: ramulus suprabranchialis posterior +namespace: uberon/phenoscape-anatomy +def: "Ramulus innervating the suprabranchial line of neuromasts." [AAO:SIQ] +is_a: UBERON:3010126 ! middle lateral line nerve (MLLN) +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010801 +name: ramus lateral +namespace: uberon/phenoscape-anatomy +def: "Ventral division of the trunk of the PLLN, this prominent ramus extends over the lateral trunk and caudal musculature innervating the lateral line of neuromasts." [AAO:SIQ] +is_a: UBERON:3010115 ! posterior lateral line nerve (PLLN) +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010802 +name: courtship gland +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:3010604 ! cranial glands +relationship: part_of UBERON:0001003 ! skin epidermis +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010804 +name: ramus ventral +namespace: uberon/phenoscape-anatomy +def: "This ramus leaves the postotic ganglionic complex together with the third branchial ramus of X. This ramule innervates the ventral line of neuromasts." [AAO:SIQ] +is_a: UBERON:3010115 ! posterior lateral line nerve (PLLN) +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010812 +name: obsolete Dorsal tail tubercle +namespace: uberon/phenoscape-anatomy +is_obsolete: true +replaced_by: UBERON:3010201 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010813 +name: vent glands +namespace: uberon/phenoscape-anatomy +is_a: UBERON:3010603 ! body gland +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010815 +name: m. flexor indicis superficialis proprius +namespace: uberon/phenoscape-anatomy +def: "Originates on the internal border of the distal carpal 5-4-3 and inserts on the distal end of phalynx I." [AAO:MEJ] +is_a: UBERON:0014892 ! skeletal muscle organ +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010818 +name: hepatic peritoneum +namespace: uberon/phenoscape-anatomy +def: "Peritoneum that surrounds the liver." [AAO:JMG] +is_a: UBERON:0002358 ! peritoneum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010819 +name: gastrointestinal peritoneum +namespace: uberon/phenoscape-anatomy +def: "Peritoneum that surrounds the stomach and intestines." [AAO:JMG] +is_a: UBERON:0002358 ! peritoneum +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010820 +name: suboccular arch +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0004752 ! palatoquadrate cartilage +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010821 +name: hyoquadrate process +namespace: uberon/phenoscape-anatomy +def: "A projection on the suboccular arch, ventral to the muscular process, that serves as the articulation point for the lateral process of the ceratohyal of the hyobranchial skeleton." [AAO:AMM] +is_a: UBERON:0004752 ! palatoquadrate cartilage +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010824 +name: processus triangularis of palatoquadrate cartilage +namespace: uberon/phenoscape-anatomy +synonym: "processus triangularis" BROAD [] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0004752 ! palatoquadrate cartilage +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010827 +name: anterior prenasal cartilage +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0001823 ! nasal cartilage +is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0006813 ! nasal skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010828 +name: commissura terminales of hyoid apparatus +namespace: uberon/phenoscape-anatomy +synonym: "commissura terminales" BROAD [] +is_a: UBERON:0011004 ! pharyngeal arch cartilage +relationship: part_of UBERON:0010272 ! hyoid apparatus +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010829 +name: sulcus intermedius +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0006846 ! surface groove +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010830 +name: spicule +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0005884 ! hyoid arch skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010831 +name: occipito-petrosal +namespace: uberon/phenoscape-anatomy +def: "Fusion of the occipital segment or occipital ring and otic capsule (Francis, 1934)." [AAO:EJS] +synonym: "occipital-petrosal" EXACT [] +synonym: "occipito-otic" RELATED [] +synonym: "otic-occipital complex" RELATED [Phenoscape:DB] +is_a: UBERON:0004765 ! skeletal element +relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010832 +name: occipital segment +namespace: uberon/phenoscape-anatomy +def: "Metameric segment forming the back of the skull." [AAO:EJS] +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0001676 ! occipital bone +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010836 +name: posterolateral supplementary element +namespace: uberon/phenoscape-anatomy +def: "A muscle slip arising from the ventral surface of the mandible by means of the ligament near the site of mandibular articulation. The fibers pass anteromedially and attach upon the ventral surfaces of the principal element of the m. intermandibularis (Tyler, 1971)." [AAO:EJS] +is_a: UBERON:0010931 ! intermandibularis +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010837 +name: apical supplementary element +namespace: uberon/phenoscape-anatomy +def: "A muscle slip arising from the lingual surface of the mandible on each side of the m. submentalis. The fibers pass posteromedially and attach upon the median raphe of the principal element (Tyler, 1971)." [AAO:EJS] +is_a: UBERON:0010931 ! intermandibularis +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010838 +name: anterolateral supplementary element +namespace: uberon/phenoscape-anatomy +def: "A muscle slip arising from the lingual surface of the mandible on the anterior portion of the bone. The fibers pass anteriorly, parallel to the mandible, and attach upon the ventral surface of the m. submentalis (Tyler, 1971)." [AAO:EJS] +is_a: UBERON:0010931 ! intermandibularis +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3010840 +name: obsolete portion of cell substance +namespace: uberon/phenoscape-anatomy +def: "Portion of organism substance located within a cell." [AAO:BJB] +xref: CARO:0000063 "portion of cell substance" +is_obsolete: true +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3011040 +name: first pancreatic bud +namespace: uberon/phenoscape-anatomy +synonym: "pancreas" BROAD [UBERON:3011040] +is_a: UBERON:0002050 ! embryonic structure +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3011045 +name: gasserian ganglion +namespace: uberon/phenoscape-anatomy +synonym: "gasserian ganglia" RELATED [UBERON:3011045] +is_a: UBERON:0000045 ! ganglion +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3011048 +name: genital system +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000467 ! anatomical system +relationship: part_of UBERON:0004122 ! genitourinary system +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3011081 +name: obsolete posterior cardinal vein +namespace: uberon/phenoscape-anatomy +is_obsolete: true +replaced_by: UBERON:0002065 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3011108 +name: obsolete tympanum +namespace: uberon/phenoscape-anatomy +synonym: "tympanic membrane" EXACT [UBERON:3011108] +is_obsolete: true +replaced_by: UBERON:0002364 +created_by: amphibian_anatomy_curators + +[Term] +id: UBERON:3011120 +name: early proximal tubule +namespace: uberon/phenoscape-anatomy +synonym: "PT2" EXACT [UBERON:3011120] +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0005309 ! pronephric nephron +created_by: amphibian_anatomy_curators +creation_date: 2011-04-20T05:19:55Z + +[Term] +id: UBERON:3011121 +name: late distal segment +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0005309 ! pronephric nephron +created_by: amphibian_anatomy_curators +creation_date: 2011-04-20T05:21:45Z + +[Term] +id: UBERON:3011122 +name: obsolete late proximal tubule +namespace: uberon/phenoscape-anatomy +is_obsolete: true +replaced_by: UBERON:0009622 +created_by: amphibian_anatomy_curators +creation_date: 2011-04-20T05:22:49Z + +[Term] +id: UBERON:4000002 +name: obsolete mode of ossification +namespace: uberon/phenoscape-anatomy +def: "The formation of bone or of a bony substanc, or the conversion of fibrous tissue or of cartilage into bone or a bony substance." [GOC:mtg_mpo\, PMID\:17572649] +xref: GO:0001503 +is_obsolete: true +replaced_by: GO:0001503 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000003 +name: permanent cartilage +namespace: uberon/phenoscape-anatomy +def: "Chondrogenic element that is composed of cartilage that is not replaced." [PSPUB:0000170] +is_a: UBERON:0007844 ! cartilage element +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000004 +name: obsolete opercle bone +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that forms the postero-dorsal part of the opercular series. The opercle articulates with the hyomandibula antero-dorsally and with the subopercle ventrally. The opercle is a paired bone." [TAO:curator] +comment: Term resides in TAO. +is_obsolete: true +replaced_by: UBERON:2000250 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000005 +name: obsolete basihyal element +namespace: uberon/phenoscape-anatomy +comment: Term resides in TAO. +is_obsolete: true +replaced_by: UBERON:0011614 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000007 +name: obsolete basihyal bone +namespace: uberon/phenoscape-anatomy +def: "Endochondral bone that is median and is the anterior-most bone of the ventral hyoid arch." [TAO:curator] +comment: Term resides in TAO. +is_obsolete: true +replaced_by: UBERON:0011618 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000009 +name: obsolete notochordal cell +namespace: uberon/phenoscape-anatomy +def: "Cell of the notochord, often vacuolated or resembles a chondrocyte." [VSAO:curator] +is_obsolete: true +replaced_by: CL:0007005 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000010 +name: obsolete notochordal mesodermal cell +namespace: uberon/phenoscape-anatomy +is_obsolete: true +replaced_by: CL:0007006 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000012 +name: obsolete skeletogenic cell +namespace: uberon/phenoscape-anatomy +def: "Cell that has the potential to form a skeletal cell type (e.g., cells in periosteum, cells in marrow) and produce extracellular matrix (often mineralized) and skeletal tissue (often mineralized)." [VSAO:curator] +is_obsolete: true +replaced_by: CL:0007001 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000013 +name: mineralized skeletal tissue +def: "Skeletal tissue that is mineralized." [XAO:0004039, XAO:EJS] +synonym: "mineralized tissue" BROAD [VSAO:0000013] +xref: VSAO:0000013 +xref: XAO:0004039 +is_a: UBERON:0004755 ! skeletal tissue + +[Term] +id: UBERON:4000014 +name: obsolete basihyal cartilage +namespace: uberon/phenoscape-anatomy +def: "Pharyngeal arch cartilage that is median and is the anterior-most cartilage of the ventral hyoid arch." [TAO:curator] +comment: Term resides in TAO. +is_obsolete: true +replaced_by: UBERON:0011615 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000016 +name: obsolete basihyal condensation +namespace: uberon/phenoscape-anatomy +is_obsolete: true +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000018 +name: obsolete ventral hyoid arch +namespace: uberon/phenoscape-anatomy +comment: Term resides in TAO. +is_obsolete: true +replaced_by: UBERON:0011153 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000019 +name: obsolete chordablast +namespace: uberon/phenoscape-anatomy +def: "Epithelial cell that is large, vacuolated, and part of the notochord." [VSAO:curator] +is_obsolete: true +replaced_by: CL:0007008 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000020 +name: mineralized extracellular matrix +namespace: uberon/phenoscape-anatomy +def: "Extracellular matrix that is mineralized." [PSPUB:0000170] +is_a: UBERON:0000479 ! tissue +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000021 +name: obsolete proteinaceous extracellular matrix +namespace: uberon/phenoscape-anatomy +def: "A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus. [GOC:mtg_sensu, ISBN:0198547684]." [GO:[GOC\:mtg_sensu\, ISBN\:0198547684\], GO_REF:0000034, VSAO:curator] +is_obsolete: true +replaced_by: GO:0005578 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000022 +name: obsolete extracellular matrix +namespace: uberon/phenoscape-anatomy +def: "Combination of protein fibers, ground substance and tissue fluid; typically has embedded cells." [PSPUB:0000170] +synonym: "ECM" EXACT [VSAO:curator] +is_obsolete: true +replaced_by: GO:0031012 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000024 +name: obsolete intercalar +namespace: uberon/phenoscape-anatomy +def: "Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal." [TAO:curator] +comment: Term resides in TAO. +is_obsolete: true +replaced_by: UBERON:2000474 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000028 +name: integumentary papilla +namespace: uberon/phenoscape-anatomy +def: "Odontogenic papilla that is located in the integument." [PSPUB:0000170] +synonym: "scale papilla" EXACT [VSAO:curator] +is_a: UBERON:0001763 ! odontogenic papilla +relationship: located_in UBERON:0002199 ! integument +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000030 +name: oropharyngeal papilla +namespace: uberon/phenoscape-anatomy +def: "Odontogenic papilla located along the jaws or pharyngeal skeleton." [PSPUB:0000170] +synonym: "oropharyngeal dental papilla" EXACT [VSAO:curator] +is_a: UBERON:0001763 ! odontogenic papilla +relationship: located_in UBERON:0001729 ! oropharynx +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000038 +name: obsolete preameloblast +namespace: uberon/phenoscape-anatomy +def: "Skeletogenic cell that has the potential to develop into an ameloblast." [VSAO:curator] +is_obsolete: true +replaced_by: CL:0007000 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000039 +name: obsolete chordoblast +namespace: uberon/phenoscape-anatomy +def: "Skeletogenic cell that is derived from the notochordal mesoderm and produces notochordal tissue (and cartilage tissue in some taxa)." [VSAO:curator] +is_obsolete: true +replaced_by: CL:0007008 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000041 +name: obsolete preodontoblast +namespace: uberon/phenoscape-anatomy +def: "Skeletogenic cell that has the potential to form an odontoblast, deposits predentine, and arises from a neural crest cell." [VSAO:curator] +is_obsolete: true +replaced_by: CL:0007003 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000043 +name: obsolete precementoblast +namespace: uberon/phenoscape-anatomy +def: "Skeletogenic cell that has the potential to develop into a cementoblast." [VSAO:curator] +is_obsolete: true +replaced_by: CL:0007002 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000044 +name: obsolete prechondroblast +namespace: uberon/phenoscape-anatomy +def: "Skeletogenic cell that has the potential to develop into a chondroblast; and arises from neural crest, meseosdermal and notochordal and connective tissue cells." [VSAO:curator] +is_obsolete: true +replaced_by: CL:0007009 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000045 +name: obsolete preosteoblast +namespace: uberon/phenoscape-anatomy +def: "Skeletogenic cell that has the potential to transform into an osteoblast, and develops from neural crest or mesodermal cells." [VSAO:curator] +is_obsolete: true +replaced_by: CL:0007010 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000051 +name: lepidosteoid scale +namespace: uberon/phenoscape-anatomy +def: "Multi-layer ganoid scale composed of ganoine and cellular bone." [PSPUB:0000170] +is_a: UBERON:4000052 ! ganoid scale +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000052 +name: ganoid scale +namespace: uberon/phenoscape-anatomy +def: "Thick, rhomboid-shaped integumentary skeletal element composed of multiple tissues including ganoine and bone." [PSPUB:0000170] +is_a: UBERON:0007380 ! dermal scale +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000053 +name: vacuolated notochordal tissue +namespace: uberon/phenoscape-anatomy +def: "Connective tissue that is matrix-poor with large number of vacuolated cells." [PSPUB:0000170] +synonym: "notochord proper" EXACT [VSAO:curator] +is_a: UBERON:0002384 ! connective tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0002328 ! notochord +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000055 +name: polypteroid scale +namespace: uberon/phenoscape-anatomy +def: "Multi-tissue structure composed of ganoine, dentine, elasmodine and cellular bone." [PSPUB:0000170] +synonym: "polypterid scale" EXACT [VSAO:curator] +is_a: UBERON:4000052 ! ganoid scale +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000059 +name: avascular GAG-rich matrix +namespace: uberon/phenoscape-anatomy +def: "Proteinaceous extracellular matrix that is avascular and consists primarily of glycosaminoglycans." [PSPUB:0000170] +synonym: "avascular glycosaminoglycan-rich matrix" EXACT [VSAO:curator] +synonym: "cartilage matrix" EXACT [VSAO:curator] +synonym: "cartilage-like matrix" EXACT [VSAO:curator] +is_a: UBERON:0000479 ! tissue +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000070 +name: elasmoid scale +namespace: uberon/phenoscape-anatomy +def: "Multi-tissue integumentary element composed dentine, elasmodine, and hypermineralized tissue." [PSPUB:0000170] +is_a: UBERON:0007380 ! dermal scale +relationship: has_part UBERON:0001751 ! dentine +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000074 +name: palaeoniscoid scale +namespace: uberon/phenoscape-anatomy +def: "Multi-tissue structure composed of ganoine, dentine and bone; not known in extant taxa." [PSPUB:0000170] +synonym: "Palaeoniscus-type scale" EXACT [VSAO:curator] +is_a: UBERON:4000052 ! ganoid scale +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000077 +name: non-mineralized chondroid tissue +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0004755 ! skeletal tissue +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000078 +name: chondroid tissue +namespace: uberon/phenoscape-anatomy +def: "Skeletal tissue that is mineralized, has large chondrocyte-like cells, sparse extracellular matrix, and minimal perichondrium; develops from non-mineralized chondroid tissue." [PSPUB:0000170, TAO:curator] +synonym: "chondroid bone tissue" EXACT [VSAO:curator] +is_a: UBERON:0004755 ! skeletal tissue +relationship: develops_from UBERON:4000077 ! non-mineralized chondroid tissue +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000080 +name: keratin-based scale +namespace: uberon/phenoscape-anatomy +def: "Fold or elevation of the epidermis rich in keratin proteins; possibly calcified but does not contain skeletal elements." [PSPUB:0000170] +is_a: UBERON:0007380 ! dermal scale +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000081 +name: cosmoid scale +namespace: uberon/phenoscape-anatomy +def: "Multi-tissue integumentary element composed of enamel or enameloid, dentine and lamellar bone, and characterized by pore-canal system." [PSPUB:0000170] +is_a: UBERON:0007380 ! dermal scale +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000086 +name: secondary cartilage tissue +namespace: uberon/phenoscape-anatomy +def: "Cartilage tissue that is part of the exoskeleton, deposited adjacent to bone after bone formation." [PSPUB:0000170] +is_a: UBERON:0002418 ! cartilage tissue +relationship: part_of UBERON:0010364 ! dermal skeleton +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000087 +name: cosmine +namespace: uberon/phenoscape-anatomy +synonym: "cosmoid scale tissue" EXACT [PSPUB:0000170] +is_a: UBERON:0010365 ! odontoid tissue +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000088 +name: mineralized cartilage tissue +namespace: uberon/phenoscape-anatomy +def: "Cartilage tissue that is mineralized." [PSPUB:0000170] +is_a: UBERON:0002418 ! cartilage tissue +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000090 +name: integumentary skeleton +namespace: uberon/phenoscape-anatomy +def: "Skeletal subdivision that is part of the extra-oral dermal skeletal system that develops and remains invested within the integument, primarily the dermis." [PSPUB:0000170] +is_a: UBERON:0010912 ! subdivision of skeleton +relationship: located_in UBERON:0002199 ! integument +relationship: part_of UBERON:0010364 ! dermal skeleton +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000095 +name: obsolete non-terminally differentiated odontoblast +namespace: uberon/phenoscape-anatomy +def: "Odontoblast that non-terminally differentiated, located in the odontogenic papilla and dentine tissue, and transforms from a odontoblast cell." [PSPUB:0000170] +is_obsolete: true +replaced_by: CL:00007012 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000096 +name: obsolete terminally differentiated odontoblast +namespace: uberon/phenoscape-anatomy +def: "Odontoblast that is terminally differentiated and derived from an odontogenic papilla and associated with dentine." [VSAO:curator] +is_obsolete: true +replaced_by: CL:00007013 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000097 +name: orthodentine +namespace: uberon/phenoscape-anatomy +def: "Odontoid tissue that typically contains tubules and is acellular." [PSPUB:0000170] +is_a: UBERON:0010365 ! odontoid tissue +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000102 +name: osteodentine +namespace: uberon/phenoscape-anatomy +is_a: UBERON:0010365 ! odontoid tissue +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000104 +name: ganoine +namespace: uberon/phenoscape-anatomy +def: "Odontogenic tissue that is hypermineralized acellular, noncollagenous, covered by an epidermis and often deposited in multiple layers." [PSPUB:0000170] +is_a: UBERON:0003585 ! dermis connective tissue +is_a: UBERON:0010365 ! odontoid tissue +relationship: part_of UBERON:4000052 ! ganoid scale +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000105 +name: limiting layer of elasmoid scale +namespace: uberon/phenoscape-anatomy +def: "Hypermineralized tissue lacking collagen (except Sharpey's fibres), developing in close proximity to the basal cells of the overlying epithelium." [PSPUB:0000170] +comment: Not clear if this layer is acellular, making a tissue type for now. +is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:4000070 ! elasmoid scale +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000106 +name: vasodentine +namespace: uberon/phenoscape-anatomy +def: "Dentine tissue that lacks dentine tubules and that is penetrated by blood capillaries." [PSPUB:0000170] +synonym: "vascular dentine" EXACT [VSAO:curator] +is_a: UBERON:0010365 ! odontoid tissue +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000107 +name: elasmodine +namespace: uberon/phenoscape-anatomy +def: "Odontogenic tissue that consists of multiple layers of collagen fibers organized in orthogonal or twisted arrangements." [PSPUB:0000170] +is_a: UBERON:0003585 ! dermis connective tissue +is_a: UBERON:0010365 ! odontoid tissue +relationship: part_of UBERON:4000070 ! elasmoid scale +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000108 +name: non-mineralized hyaline cartilage tissue +namespace: uberon/phenoscape-anatomy +def: "Hyaline cartilage tissue that is not mineralized." [PSPUB:0000170] +is_a: UBERON:0001994 ! hyaline cartilage tissue +is_a: UBERON:0011589 ! non-mineralized cartilage tissue +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000109 +name: mineralized hyaline cartilage tissue +namespace: uberon/phenoscape-anatomy +def: "Hyaline cartilage tissue that is mineralized." [PSPUB:0000170] +is_a: UBERON:0001994 ! hyaline cartilage tissue +is_a: UBERON:4000013 ! mineralized skeletal tissue +is_a: UBERON:4000088 ! mineralized cartilage tissue +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000115 +name: mineralized bone tissue +namespace: uberon/phenoscape-anatomy +def: "Bone tissue mineralized with hydroxyapatite." [PSPUB:0000170] +is_a: UBERON:0002481 ! bone tissue +is_a: UBERON:4000013 ! mineralized skeletal tissue +relationship: develops_from UBERON:0008883 ! osteoid +relationship: has_part UBERON:4000020 ! mineralized extracellular matrix +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000116 +name: obsolete terminally differentiated osteoblast +namespace: uberon/phenoscape-anatomy +def: "Osteoblast that is terminally differentiated, located adjacent to acellular or cellular bone tissue within periosteum, and is capable of mineralizing the matrix." [VSAO:curator] +is_obsolete: true +replaced_by: CL:0001039 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000117 +name: obsolete non-terminally differentiated osteoblast +namespace: uberon/phenoscape-anatomy +def: "Osteoblast that is non-terminally differentiated and located in cellular bone tissue or under the periosteum in acellular bone." [VSAO:curator] +is_obsolete: true +replaced_by: CL:0001040 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000118 +name: cellular bone tissue +namespace: uberon/phenoscape-anatomy +def: "Mineralized bone tissue that always includes non-terminally differentiated osteoblasts and osteocytes." [PSPUB:0000170] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4000115 ! mineralized bone tissue +disjoint_from: UBERON:4000122 ! acellular bone tissue +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000119 +name: non-mineralized avascular GAG-rich matrix +namespace: uberon/phenoscape-anatomy +def: "Avascular GAG-rich matrix that is not mineralized." [PSPUB:0000170] +synonym: "non-mineralized cartilage" EXACT [VSAO:curator] +is_a: UBERON:4000059 ! avascular GAG-rich matrix +relationship: part_of UBERON:0011589 ! non-mineralized cartilage tissue +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000120 +name: mineralized avascular GAG-rich matrix +namespace: uberon/phenoscape-anatomy +def: "Avascular GAG-rich matrix that is mineralized." [PSPUB:0000170] +is_a: UBERON:4000020 ! mineralized extracellular matrix +is_a: UBERON:4000059 ! avascular GAG-rich matrix +relationship: part_of UBERON:4000088 ! mineralized cartilage tissue +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000122 +name: acellular bone tissue +namespace: uberon/phenoscape-anatomy +def: "Mineralized bone tissue that has terminally differentiated osteoblasts but lacks osteocytes." [PSPUB:0000170] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4000115 ! mineralized bone tissue +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000123 +name: odontode tissue +namespace: uberon/phenoscape-anatomy +def: "Skeletal tissue that is avascular tubular mineralized matrix, primarily made of dentine that is deposited by odontoblasts that are excluded from the matrix; develops from pre-dentine tissue." [PSPUB:0000170] +synonym: "dental tissue" RELATED [VSAO:curator] +is_a: UBERON:0010365 ! odontoid tissue +relationship: develops_from UBERON:0011587 ! pre-dentine +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000134 +name: ossified tendon +namespace: uberon/phenoscape-anatomy +def: "Sesamoid that develops within a tendon, distal to an articulation or joint." [PSPUB:0000169] +synonym: "intratendonous ossification" RELATED [VSAO:0000134] +is_a: UBERON:0001479 ! sesamoid bone +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000136 +name: obsolete direct ossification +namespace: uberon/phenoscape-anatomy +def: "Ossification that does not require the replacement of pre-existing tissues, most often a cartilaginous model." [PSPUB:0000170] +is_obsolete: true +replaced_by: GO:0036072 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000138 +name: ligamentous replacement element +namespace: uberon/phenoscape-anatomy +def: "Replacement element that forms as a replacement of a ligament." [PSPUB:0000170] +is_a: UBERON:0010522 ! replacement element +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000140 +name: obsolete replacement ossification +namespace: uberon/phenoscape-anatomy +def: "Ossification that requires the replacement of a pre-existing tissue prior to bone tissue formation." [VSAO:curator] +synonym: "indirect ossification" EXACT [VSAO:0000140] +is_obsolete: true +replaced_by: GO:0036075 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000141 +name: obsolete intramembranous ossification +namespace: uberon/phenoscape-anatomy +def: "Direct ossification that occurs within mesenchyme with the formation of an osteogenic condensation not associated with a perichondrium." [VSAO:curator] +xref: GO:0001957 +is_obsolete: true +replaced_by: GO:0001957 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000142 +name: obsolete metaplastic ossification +namespace: uberon/phenoscape-anatomy +def: "Direct ossification in which transformation of the pre-existing tissue occurs without dedifferentiation of cells or reinitiation of cell division; direct transformation of a non-bone tissue into a bone tissue." [VSAO:curator] +synonym: "metaplasia" EXACT [VSAO:0000142] +is_obsolete: true +replaced_by: GO:0036074 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000143 +name: obsolete endochondral ossification +namespace: uberon/phenoscape-anatomy +def: "Replacement ossification wherein bone tissue replaces cartilage." [VSAO:curator] +is_obsolete: true +replaced_by: GO:0001958 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000144 +name: obsolete perichondral ossification +namespace: uberon/phenoscape-anatomy +def: "Intramembranous ossification on the surface of a cartilage element as the perichondrium becomes a periosteum, without replacement of cartilage." [VSAO:curator] +is_obsolete: true +replaced_by: GO:0036073 +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000146 +name: transient cartilaginous element +namespace: uberon/phenoscape-anatomy +def: "Chondrogenic element that is composed of cartilage during development and has the potential to become replaced by another tissue." [PSPUB:0000170] +synonym: "endochondral replacement cartilage" EXACT [VSAO:0000146] +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0010363 ! endochondral element +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000159 +name: ossified ligament +namespace: uberon/phenoscape-anatomy +def: "Sesamoid that develops within a ligament, distal to an articulation or joint." [GO_REF:0000034, PSPUB:0000169] +is_a: UBERON:0001479 ! sesamoid bone +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000160 +name: anocleithrum +namespace: uberon/phenoscape-anatomy +def: "Dermal bone of pectoral girdle that is dorsal to and articulates with the cleithrum." [VSAO:curator] +comment: In sarcopterygians; analogous in position to postcleithrum in actinopterygians. +synonym: "anocleithra" EXACT PLURAL [VSAO:0000160] +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0008907 ! dermal bone +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000162 +name: median fin +namespace: uberon/phenoscape-anatomy +def: "Fin that is an unpaired fin located in the sagittal plane of the organism." [TAO:curator] +synonym: "nageoire impaire" EXACT [PSPUB:0000164] +synonym: "périssoptérygie" EXACT [PSPUB:0000140] +xref: ZFA:0005597 +is_a: UBERON:0008897 ! fin +intersection_of: UBERON:0008897 ! fin +intersection_of: intersects_midsagittal_plane_of UBERON:0000468 ! multicellular organism +relationship: intersects_midsagittal_plane_of UBERON:0000468 ! multicellular organism +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000163 +name: anal fin +namespace: uberon/phenoscape-anatomy +def: "Median fin that is located posterior to the anus." [TAO:curator] +synonym: "nageoire anale" EXACT [PSPUB:0000164] +synonym: "proctoptère" EXACT [PSPUB:0000136] +synonym: "proctoptérygie" EXACT [PAPUB:0000142, PSPUB:0000140] +xref: ZFA:0001162 +is_a: UBERON:4000162 ! median fin +intersection_of: UBERON:0008897 ! fin +intersection_of: has_skeleton UBERON:4000166 ! anal fin skeleton +relationship: has_skeleton UBERON:4000166 ! anal fin skeleton +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000164 +name: caudal fin +namespace: uberon/phenoscape-anatomy +def: "The caudal fin is the most posterior median fin. It is composed of a complex of modified centra and modified neural and hemal arches and spines. " [Phenoscape:PM] +synonym: "nageoire caudale" EXACT [PSPUB:0000164] +synonym: "tail" RELATED [VSAO:0000164] +synonym: "tail fin" RELATED [VSAO:0000164] +synonym: "uroptère" EXACT [PSPUB:0000135] +synonym: "uroptérygie" EXACT [PSPUB:0000140] +xref: ZFA:0001058 +is_a: UBERON:4000162 ! median fin +intersection_of: UBERON:0008897 ! fin +intersection_of: has_skeleton UBERON:4000167 ! caudal fin skeleton +relationship: has_skeleton UBERON:4000167 ! caudal fin skeleton +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000166 +name: anal fin skeleton +namespace: uberon/phenoscape-anatomy +def: "Median fin skeleton that is located posterior to the anus." [TAO:curator] +xref: ZFA:0000167 +is_a: UBERON:4000170 ! median fin skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:4000163 ! anal fin +relationship: part_of UBERON:4000163 ! anal fin +relationship: skeleton_of UBERON:4000163 ! anal fin +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000167 +name: caudal fin skeleton +namespace: uberon/phenoscape-anatomy +def: "Median fin skeleton supporting the caudal fin." [TAO:curator] +xref: ZFA:0000862 +is_a: UBERON:4000170 ! median fin skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:4000164 ! caudal fin +relationship: part_of UBERON:4000164 ! caudal fin +relationship: skeleton_of UBERON:4000164 ! caudal fin +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000168 +name: dorsal fin skeleton +namespace: uberon/phenoscape-anatomy +def: "Median fin skeleton located on the dorsal surface of the organism." [TAO:curator] +xref: ZFA:0001124 +is_a: UBERON:4000170 ! median fin skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:0003097 ! dorsal fin +relationship: part_of UBERON:0003097 ! dorsal fin +relationship: skeleton_of UBERON:0003097 ! dorsal fin +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000170 +name: median fin skeleton +namespace: uberon/phenoscape-anatomy +def: "Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism." [TAO:curator] +synonym: "axial fin skeleton" EXACT [VSAO:0000170] +synonym: "unpaired fin skeleton" EXACT [VSAO:0000170] +xref: ZFA:0001123 +is_a: UBERON:0012353 ! fin skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:4000162 ! median fin +relationship: part_of UBERON:4000162 ! median fin +relationship: skeleton_of UBERON:4000162 ! median fin +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000171 +name: scapular complex +namespace: uberon/phenoscape-anatomy +def: "Skeletal subdivision of dermal bones that may include the anterolateral plate (AL), the spinal process (Sp), and anteroventral plate (AV) and other dermal bones that are part of the pectoral girdle." [VSAO:curator] +comment: A scapular complex is described in placoderms (Goujet and Young, 1995). +synonym: "pectoral complex" BROAD [ISBN 3-89937-052-X [Goujet and Young 2004\]] +is_a: UBERON:0010912 ! subdivision of skeleton +relationship: part_of UBERON:0007831 ! pectoral girdle skeleton +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000172 +name: lepidotrichium +namespace: uberon/phenoscape-anatomy +def: "Dermal bone that is rod-like, formed and usually contained in a fin membrane, and jointed to or adjacent to distal radials. Lepidotrichia are formed from paired hemitrichia surrounding actinotrichia. There are usually two more lepidotrichia than distal radials." [TAO:curator] +comment: Need to review develops_from relationship to actinotrichia. Lepidotrichia require actinotrichia for development, but develops_from may not be appropriate relationship. See Zhang et al 2010 for details. doi:10.1038/nature09137 +synonym: "fin ray" BROAD [] {http://www.w3.org/2000/01/rdf-schema#seeAlso="VSAO:0000172"} +xref: ZFA:0001554 +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:4300037 ! bony fin ray +relationship: develops_from UBERON:2000089 ! actinotrichium +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000173 +name: pelvic fin lepidotrichium +namespace: uberon/phenoscape-anatomy +def: "Lepidotrichium that is part of the pelvic fin skeleton." [TAO:curator] +synonym: "pelvic fin lepidotrichia" EXACT PLURAL [VSAO:0000173] +synonym: "pelvic fin ray" NARROW [VSAO:0000173] +xref: ZFA:0001552 +is_a: UBERON:0010742 ! bone of pelvic complex +is_a: UBERON:4440011 ! paired fin lepidotrichium +intersection_of: UBERON:4000172 ! lepidotrichium +intersection_of: part_of UBERON:0000152 ! pelvic fin +relationship: part_of UBERON:0010711 ! pelvic fin skeleton +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000174 +name: caudal fin lepidotrichium +namespace: uberon/phenoscape-anatomy +def: "Lepidotrichium that is part of the caudal fin skeleton." [TAO:curator] +synonym: "caudal fin ray" NARROW [VSAO:0000174] +xref: ZFA:0001550 +is_a: UBERON:4500008 ! median fin lepidotrichium +intersection_of: UBERON:4000172 ! lepidotrichium +intersection_of: part_of UBERON:4000164 ! caudal fin +relationship: part_of UBERON:4000167 ! caudal fin skeleton +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000175 +name: pectoral fin lepidotrichium +namespace: uberon/phenoscape-anatomy +def: "Lepidotrichium that is part of the pectoral fin skeleton." [TAO:curator] +comment: Each pectoral lepidotrichium may be unsegmented (e.g., spine), segmented but unbranched (e.g., leading ray) or segmented and branched. Definition of lepidotrichium by Schultze and Arratia (1989: 217). For additional information about lepidotrichia see Arratia et al. 2001 and Arratia 2008. +synonym: "pectoral fin lepidotrichia" EXACT PLURAL [VSAO:0000175] +synonym: "pectoral fin ray" NARROW [VSAO:0000175] +xref: ZFA:0001551 +is_a: UBERON:0010741 ! bone of pectoral complex +is_a: UBERON:4440011 ! paired fin lepidotrichium +intersection_of: UBERON:4000172 ! lepidotrichium +intersection_of: part_of UBERON:0000151 ! pectoral fin +relationship: part_of UBERON:0010710 ! pectoral fin skeleton +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000176 +name: anal fin lepidotrichium +namespace: uberon/phenoscape-anatomy +def: "Lepidotrichium that is part of the anal fin skeleton." [TAO:curator] +synonym: "anal fin lepidotrichia" EXACT PLURAL [VSAO:0000176] +synonym: "anal fin ray" NARROW [VSAO:0000176] +xref: ZFA:0001421 +is_a: UBERON:4500008 ! median fin lepidotrichium +intersection_of: UBERON:4000172 ! lepidotrichium +intersection_of: part_of UBERON:4000163 ! anal fin +relationship: part_of UBERON:4000166 ! anal fin skeleton +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000177 +name: dorsal fin lepidotrichium +namespace: uberon/phenoscape-anatomy +def: "Lepidotrichium that is part of the dorsal fin skeleton." [TAO:curator] +synonym: "dorsal fin lepidotrichia" EXACT PLURAL [VSAO:0000177] +synonym: "dorsal fin ray" NARROW [VSAO:0000177] +xref: ZFA:0001418 +is_a: UBERON:0004247 ! bone of dorsum +is_a: UBERON:4500008 ! median fin lepidotrichium +intersection_of: UBERON:4000172 ! lepidotrichium +intersection_of: part_of UBERON:0003097 ! dorsal fin +relationship: part_of UBERON:4000168 ! dorsal fin skeleton +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4000182 +name: suprabranchial fin +namespace: uberon/phenoscape-anatomy +def: "Paired fin that is a bilaterally paired anterior outgrowth located high on the side of the animal, not far behind the orbit, with the posterior extremity corresponding with the expected posterior end of the branchial region." [PSPUB:0000172] +comment: Suprabranchial fins are anterior outgrowths from the cephalothorax of thelodonts. Typically scale covered. They do not appear to contain skeletal tissues or elements. +is_a: UBERON:0002534 ! paired fin +created_by: vertebrate_skeletal_anatomy_curators + +[Term] +id: UBERON:4100000 +name: skeletal element projection +namespace: none +def: "Anatomical projection that is composed of bone or cartilage tissue." [] +is_a: UBERON:0004529 ! anatomical projection +intersection_of: UBERON:0004529 ! anatomical projection +intersection_of: part_of UBERON:0004765 ! skeletal element +relationship: part_of UBERON:0004765 ! skeletal element + +[Term] +id: UBERON:4100001 +name: obsolete astragalus-calcaneum unit +namespace: none +def: "Anatomical cluster that is an osteological unit consisting of the astragalus and calcaneum." [PHENOSCAPE:ni] +comment: TO DO: add astragalus after it has been added. +is_obsolete: true +created_by: Nizar Ibrahim + +[Term] +id: UBERON:4100002 +name: obsolete ectepicondylar flange +namespace: none +def: "Flange on the dorsal part of the humerus, associated with extensor musculature of the forelimb (manus. carpus)." [PHENOSCAPE:ni] +is_obsolete: true +created_by: Nizar Ibrahim + +[Term] +id: UBERON:4100003 +name: articular surface +namespace: none +def: "Anatomical surface that is part of a skeletal element and articulates with another skeletal element. [NI]" [] +comment: Not necessarily part of a joint. +is_a: UBERON:0006984 ! anatomical surface +relationship: part_of UBERON:0004765 ! skeletal element +created_by: Nizar Ibrahim + +[Term] +id: UBERON:4100004 +name: ischial peduncle +namespace: none +def: "Bony projection (peduncle) that is located on the posterior portion of the ilium, posterior to the acetabulum. " [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0001274 ! ischium +created_by: Nizar Ibrahim + +[Term] +id: UBERON:4100005 +name: second phalanx +namespace: none +def: "Second most proximal phalanx in manual or pedal digits." [] +comment: Consider merging with 'intermediate phalanx' +is_a: UBERON:0003221 ! phalanx + +[Term] +id: UBERON:4100006 +name: parasternal process +namespace: none +def: "Posterior projection of the interclavicle that extends betwen and sometimes beyond the clavicles. [AD]" [] +synonym: "posterior stalk of intercalvicle" EXACT [] +synonym: "posterior stem of interclavicle" EXACT [] +is_a: UBERON:0011655 ! interclavicle +created_by: NI + +[Term] +id: UBERON:4100007 +name: pectoral articular facet +namespace: none +def: "Facet of scapulocoracoid with which the pectoral fin radial(s) articulates. Facet of scapulocoracoid with which the pectoral fin radial(s) articulates. Based on Goujet and Young (1995). [PHENOSCAPE:pm]" [] +comment: Should be part of some joint. +is_a: UBERON:4100003 ! articular surface +relationship: part_of UBERON:0004753 ! scapulocoracoid +created_by: NI + +[Term] +id: UBERON:4100008 +name: pedal claws +namespace: none +def: "Claws on the pes." [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0009564 ! distal limb integumentary appendage +relationship: part_of UBERON:0001445 ! skeleton of pes +created_by: NI + +[Term] +id: UBERON:4100009 +name: pedal digit 7 phalanx +namespace: none +def: "Phalanx of the 7th pedal digit. [AD]" [] +is_a: UBERON:0001449 ! phalanx of pes +intersection_of: UBERON:0003221 ! phalanx +intersection_of: part_of UBERON:0012137 ! pedal digit 7 +relationship: part_of UBERON:0012137 ! pedal digit 7 +created_by: NI + +[Term] +id: UBERON:4100010 +name: post-glenoid process +namespace: none +def: "Distinct notch ventral to the glenoid. [NI]" [] +comment: Fix def'n +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0004753 ! scapulocoracoid +created_by: NI + +[Term] +id: UBERON:4100011 +name: postacetabular buttress +namespace: none +def: "A bony process at the distal margin of the acetabulum formed by the ischium and/or the ischial peduncle of the ilium. [AD]" [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0001269 ! acetabular part of hip bone +created_by: NI + +[Term] +id: UBERON:4100012 +name: postacetabular zone +namespace: none +def: "Region of the ilium posterior and dorsal to the acetabulum. [AD]" [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0001273 ! ilium +created_by: NI + +[Term] +id: UBERON:4100013 +name: postcoracoid +namespace: none +def: "The posterior of the two coracoid elements found in basal tetrapods. Corresponds directly to the 'coracoid' of synapsids. [AD]" [] +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0001421 ! pectoral girdle region +created_by: NI + +[Term] +id: UBERON:4100014 +name: posterior dorsal fin +namespace: none +def: "Dorsal fin located posterior to the anterior dorsal fin. [WD]" [] +is_a: UBERON:0003097 ! dorsal fin +created_by: NI + +[Term] +id: UBERON:4100015 +name: obsolete posterior iliac process +namespace: none +def: "Posterior most of the two 'double heads' of the blade of the ilium in some take. Distinct and separate for the dorsal iliac process. [AD]" [] +is_obsolete: true +created_by: NI + +[Term] +id: UBERON:4100016 +name: posterior process of ilium +namespace: none +def: "A posteriorly directed bony projection from the ilium that is the attachment site of the iliofibularis muscle (see Sumida, 1997). [AD]" [] +synonym: "posterior iliac process" RELATED [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0001273 ! ilium +created_by: NI + +[Term] +id: UBERON:4100100 +name: parasphenoid flange +def: "Lateral expansion of the parasphenoid. [PHENOSCAPE:BC]" [] +synonym: "parasphenoid wing" BROAD [] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0004745 ! parasphenoid +created_by: NI + +[Term] +id: UBERON:4100111 +name: hemipenal sheath +alt_id: UBERON:0017158 +alt_id: UBERONTEMP:382249cd-df28-48b2-ba1a-38dc059b3d0c +def: "Soft tissue sheath covering the hemipenis." [PHENOSCAPE:NI] +synonym: "hemipenial sheath" EXACT [UBERONTEMP:382249cd-df28-48b2-ba1a-38dc059b3d0c] +synonym: "sheath of hemipenis" EXACT [UBERONTEMP:382249cd-df28-48b2-ba1a-38dc059b3d0c] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0005156 ! reproductive structure +relationship: part_of UBERON:0008812 ! hemipenis +relationship: surrounds UBERON:0008812 ! hemipenis + +[Term] +id: UBERON:4100112 +name: radial facet +def: "Facet to accommodate the radius on the distal end of the humerus. [PHENOSCAPE:NI]" [] +is_a: UBERON:4200214 ! epipodial facet +is_a: UBERON:4200230 ! surface of bone +relationship: part_of UBERON:0000976 ! humerus +created_by: NI + +[Term] +id: UBERON:4100113 +name: dermal intracranial joint +def: "Hinge in the skull skeleton to allow for kinetic movement of different parts. [PHENOSCAPE:NI]" [] +is_a: UBERON:0000982 ! skeletal joint +created_by: NI + +[Term] +id: UBERON:4100114 +name: anterior distal condyle of femur +def: "Anatomical projection in the distal region of the femur. [PHENOSCAPE:NI]" [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +is_a: UBERON:0009979 ! condyle +relationship: part_of UBERON:0000981 ! femur +created_by: NI + +[Term] +id: UBERON:4100115 +name: spiracular notch +def: "Soft tissue notch/opening lying on a spiracle.[PHENOSCAPE:NI]" [] +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0004704 ! bone fossa +created_by: NI + +[Term] +id: UBERON:4100116 +name: posterior distal condyle of femur +def: "Anatomical projection in the posterior/distal region of the femur. [PHENOSCAPE:NI]" [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +is_a: UBERON:0009979 ! condyle +relationship: part_of UBERON:0000981 ! femur +created_by: NI + +[Term] +id: UBERON:4100117 +name: presacral rib +def: "Rib located anterior to the sacral region. [PHENOSCAPE:NI]" [] +is_a: UBERON:0002228 ! rib +created_by: NI + +[Term] +id: UBERON:4100118 +name: trunk rib +def: "Rib located in the trunk (ribcage) area (i.e. excluding cervical and caudal axial series. [PHENOSCAPE:NI]" [] +is_a: UBERON:0002228 ! rib +created_by: NI + +[Term] +id: UBERON:4100119 +name: extratemporal bone +def: "Extratemporal bone: Skull bone in the posterior half of the cranium, bordering the squamosal and opercular. [PHENOSCAPE:NI]" [] +synonym: "postspiracular" EXACT [] +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:0003113 ! dermatocranium +created_by: NI + +[Term] +id: UBERON:4100120 +name: obsolete prezygapophyses +def: "Anteriorly projecting processes allowing de facto contact between consecutive vertebrae (some soft tissues are also present) via articular facets. [PHENOSCAPE:NI]" [] +is_obsolete: true +replaced_by: UBERON:0001079 +created_by: NI + +[Term] +id: UBERON:4100121 +name: thagomizer +def: "The distinctive arrangement of four to ten spikes on the tails of stegosaurid dinosaurs. These spikes are believed to have been a defensive measure against predators." [https://en.wikipedia.org/wiki/Thagomizer] +comment: The arrangement of spikes originally had no distinct name; the term Thagomizer was coined in 1982 by cartoonist Gary Larson in his comic 'The Far Side', and thereafter became gradually adopted as an informal term within scientific circles, research, and education. {xref="https://en.wikipedia.org/wiki/Thagomizer"} +synonym: "tail spikes" BROAD [] +is_a: UBERON:0034768 ! morphological feature +relationship: part_of UBERON:0007812 ! post-anal tail + +[Term] +id: UBERON:4200000 +name: medial blade of ilium +namespace: none +def: "The medial surface of the iliac blade. Origin site of the iliofemoralis internus muscle and its homologues." [PHENOSCAPE:ad] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0010746 ! iliac blade +created_by: TA Dececchi + +[Term] +id: UBERON:4200001 +name: postpubis +namespace: none +def: "The region of the pubis posterior to the acetabulum." [] +comment: In some non-avian reptile this terminology refers to a distinct rear facing process of the pubis. In avians and some closely related theropod taxa this term is used to denote the pubis itself which has been rotated to face backwards. +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0001275 ! pubis +created_by: phenoscape:ad + +[Term] +id: UBERON:4200002 +name: coracoid plate +namespace: none +def: "Broad, convex expansion of the coracoid bone below the level of the glenoid. Based on Romer 1956" [] +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0004743 ! coracoid bone +created_by: A.Dececchi + +[Term] +id: UBERON:4200003 +name: archipterygial fin +namespace: none +def: "A type of pectoral fin in which the endoskeletal elements have a main axis that runs through the center of the fin. This creates a bilaterally symmetrical fin. (Modified from Kardong 2012)." [] +comment: Is homologous to the tetrapod limb. +is_a: UBERON:0000151 ! pectoral fin +created_by: A.Dececchi + +[Term] +id: UBERON:4200004 +name: intertrochanteric fossa +namespace: none +def: "Depression on the ventreal side of the femoral head. Associated with the pubioischiofemoralis externus muscle. " [] +is_a: UBERON:0004704 ! bone fossa +relationship: part_of UBERON:0000981 ! femur +created_by: A.Dececchi + +[Term] +id: UBERON:4200005 +name: obsolete postbranchial lamina +namespace: none +def: "Medial facing projection or surface on the anterior ( cranial) region of the cleithrum that is often textured or denticled. This process has two primary functions: 1) its shape enhances the vertical strength of the cleithrum and 2) it forms the edge of the gill chamber and helps to direct water after it has passed over the gills (modified from Clack 2012)." [] +is_obsolete: true +created_by: A.Dececchi + +[Term] +id: UBERON:4200006 +name: infraglenoid buttress +namespace: none +def: "An anatomical projection ventral to the glenoid fossa on the scapulocoracoid that abuts on the cliethrum (if present)." [] +comment: Can exist in taxa without a cleithrum. +is_a: UBERON:0000064 ! organ part +is_a: UBERON:4100000 ! skeletal element projection +relationship: adjacent_to UBERON:0006657 ! glenoid fossa +relationship: part_of UBERON:0004753 ! scapulocoracoid +created_by: A.Dececchi + +[Term] +id: UBERON:4200007 +name: transverse pelvic ridge +namespace: none +def: "The transverse pelvic ridge is a short crest directly anterior to, and not extending posterior to, the prominent supra-acetabular buttress from Pawley and Warren 2006." [] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: part_of UBERON:0001273 ! ilium + +[Term] +id: UBERON:4200008 +name: inter-clavicle joint +namespace: none +def: "Joint that articulates left and right clavicles." [] +synonym: "interclavicle joint" EXACT [] +xref: PHENOSCAPE:wd +is_a: UBERON:0008114 ! joint of girdle +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001105 ! clavicle bone +created_by: AD + +[Term] +id: UBERON:4200009 +name: hypochordal lepidotrichium +namespace: none +def: "Caudal fin lepidotrichium located ventral to the notochord." [] +xref: PHENOSCAPE:wd +is_a: UBERON:4000174 ! caudal fin lepidotrichium +created_by: AD + +[Term] +id: UBERON:4200010 +name: ventral humeral ridge +namespace: none +def: "A distinct bony ridge on ventralsurface of the humeral shaft that corresponds to the attachment site of the pectoralis muscle." [] +synonym: "pectoral process" RELATED [] +xref: PHENOSCAPE:ad +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0000976 ! humerus +created_by: AD + +[Term] +id: UBERON:4200011 +name: pedal centrale +namespace: none +def: "A centrale found in the pes." [] +synonym: "navicular bone of pes" BROAD [] +xref: PHENOSCAPE:AD +is_a: UBERON:0001447 ! tarsal bone +is_a: UBERON:0012131 ! centrale +created_by: AD + +[Term] +id: UBERON:4200012 +name: ectepicondylar flange +namespace: none +def: "Flange present of the distal region of the humerus, associated with extensor musculature of forelimb." [] +xref: PHENOSCAPE:ni +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0006807 ! ectepicondyle of humerus +created_by: AD + +[Term] +id: UBERON:4200013 +name: flexor surface +namespace: none +def: "Surface of a long bone that possess the flexor muscle attachment sites." [] +xref: PHENOSCAPE:ni +is_a: UBERON:4200230 ! surface of bone +relationship: part_of UBERON:0002495 ! long bone +created_by: AD + +[Term] +id: UBERON:4200014 +name: lateral tuber of ulna +namespace: none +def: "Projection on the lateral side of proximal part of the ulna[PHENOSCAPE:ni]." [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0001424 ! ulna +created_by: AD + +[Term] +id: UBERON:4200015 +name: inner digits of foot +namespace: none +def: "The medial most digits of the pes." [] +comment: In most tetrapods this corresponds to digits II-IV, but the exact identiy of digits in this region varies taxonomically based on digit numbering. +xref: PHENOSCAPE:ad +is_a: UBERON:0005445 ! segment of pes +relationship: part_of UBERON:0012142 ! pedal digitopodium region +created_by: AD + +[Term] +id: UBERON:4200016 +name: postbranchial lamina +namespace: none +def: "Medial facing projection or surface on the anterior ( cranial) region of the cleithrum that is often textured or denticled. This process has two primary functions: 1) its shape enhances the vertical strength of the cleithrum and 2) it forms the edge of the gill chamber and helps to direct water after it has passed over the gills (modified from Clack 2012)" [] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004741 ! cleithrum +created_by: AD + +[Term] +id: UBERON:4200017 +name: obsolete infraglenoid buttress +namespace: none +def: "An anatomical projection venteral to the glenoid fossa on the scapulocoracoid that abuts on the cliethrum." [] +xref: PHENOSCAPE:ad +is_obsolete: true +created_by: AD + +[Term] +id: UBERON:4200018 +name: calcaneal tuber +namespace: none +def: "An enlargement of the distal region of the calcaneum that corresponds to the attachment site for the foot extensor muscles." [] +xref: PHENOSCAPE:ad +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0001450 ! calcaneus +created_by: AD + +[Term] +id: UBERON:4200019 +name: preacetabular process +namespace: none +def: "Process on ilium located anteriorly to acetabulum." [] +xref: PHENOSCAPE:ad +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0001273 ! ilium +created_by: AD + +[Term] +id: UBERON:4200020 +name: suprascapular fossa +namespace: none +def: "Fossa on the medial surface on the scapula above the glenoid." [] +xref: PHENOSCAPE:ad +is_a: UBERON:0004704 ! bone fossa +relationship: part_of UBERON:0006849 ! scapula +created_by: AD + +[Term] +id: UBERON:4200021 +name: astragalus-calcaneum unit +namespace: none +def: "Osteological unit consisting of the astragalus and calcaneum. " [] +xref: PHENOSCAPE:NI +is_a: UBERON:0000075 ! subdivision of skeletal system +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: has_component UBERON:0001450 ! calcaneus +relationship: has_component UBERON:0002395 ! talus +relationship: part_of UBERON:0009879 ! tarsal skeleton +created_by: NI + +[Term] +id: UBERON:4200022 +name: extracleithrum +namespace: uberon/phenoscape-anatomy +def: "Narrow bone that lies ventral to the level of insertion of the pectoral fin and is sutured to the posterior edges of both the clavicle and cleithrum. Based on Forey 1998." [] +comment: The presence of this bone is a synapomorphy of coelacanth fishes. +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0008907 ! dermal bone +created_by: AD + +[Term] +id: UBERON:4200023 +name: anterior dorsal fin +namespace: none +def: "A dorsal fin located anterior to posterior dorsal fin. [WD]" [] +is_a: UBERON:0003097 ! dorsal fin +created_by: AD + +[Term] +id: UBERON:4200024 +name: obsolete suprascapular fossa +namespace: none +def: "Fossa located on the medial surface of the scapula above the glenoid" [] +is_obsolete: true +created_by: AD + +[Term] +id: UBERON:4200025 +name: ascending process of the astragalus +namespace: none +def: "Flattened process of the dorsl surface of the astragalus which contacts the tibia anteriorly. [NI]" [] +xref: PHENOSCAPE:NI +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0002395 ! talus +created_by: AD + +[Term] +id: UBERON:4200026 +name: supraglenoid foramen +namespace: none +def: "Foramen that perforates supraglenoid buttress." [] +is_a: UBERON:0005744 ! bone foramen +relationship: part_of UBERON:4200027 ! supraglenoid buttress +created_by: ad + +[Term] +id: UBERON:4200027 +name: supraglenoid buttress +namespace: none +def: "A bony projection dorsal to the glenoid articulation on the scapulocoracoid." [] +comment: In basal tetrapodomorphs this structure braces the scapula on the cleithrum, but this function is lost in derived tetrapods. +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0004753 ! scapulocoracoid +created_by: AD + +[Term] +id: UBERON:4200028 +name: adductor blade +namespace: none +def: "A prominent ridge in basal tetrapods on the ventral side of the femur that includes the fourth trochater, internal trochanter and the adductor crest (based on Coates, 1996). [AD]" [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0000981 ! femur +created_by: AD + +[Term] +id: UBERON:4200029 +name: adductor crest +namespace: none +def: "A bony crest on venteral side of femur that is the attachment site for the adductor muscles. [AD]" [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:4200028 ! adductor blade +created_by: AD + +[Term] +id: UBERON:4200030 +name: antitrochanter +namespace: none +def: "Raised surface at the posterior portion of the acetabulum (see Nesbitt, 2011). [NI]" [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0001269 ! acetabular part of hip bone +created_by: AD + +[Term] +id: UBERON:4200031 +name: caudalipuboischiotibialis +namespace: none +def: "Muscle that is associated with tail flexion. Orginates on one of the first post sacral vertebrae posteriorly and inserts on the posterior edge of the m.puboischiotibialis. (modified from Duellman and Trueb 1994)" [] +comment: To Do: add attachment site terms to ext +is_a: UBERON:0014892 ! skeletal muscle organ +created_by: AD + +[Term] +id: UBERON:4200032 +name: clavicle blade +namespace: none +def: "Expanded and flattened ventral region of clavicle bone." [] +is_a: UBERON:0005055 ! zone of long bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001105 ! clavicle bone +created_by: Ad + +[Term] +id: UBERON:4200033 +name: cleithrum head +namespace: none +def: "Expanded dorsal region of the cleithrum. " [] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004741 ! cleithrum +created_by: AD + +[Term] +id: UBERON:4200034 +name: cnemial crest +namespace: none +def: "Longitudnal bony ridge on tibia, attachment site of the major extensor muscle of the hind limb." [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0000979 ! tibia +created_by: AD + +[Term] +id: UBERON:4200036 +name: internal trochanter +namespace: none +def: "A boney projection on the internal diaphysis of the femur anterior or medial to the intertrochanteric fossa, below the femoral head. Muscle attachment site for ventral muscle mass notably the puboischiofemoralis externus. Modified from Romer 1956" [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0000981 ! femur +created_by: AD + +[Term] +id: UBERON:4200037 +name: supinator process +namespace: none +def: "A bony process that corresponds to the attachment site for the forelimb supinator muscles in tetrapods, distal to the deltopectoral crest and anterior to the radial condyle." [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0000976 ! humerus +created_by: AD + +[Term] +id: UBERON:4200038 +name: subscapular fossa +namespace: none +def: "A marked depression on the medial side of the scapula blade, often opposite the glenoid region." [] +is_a: UBERON:0004704 ! bone fossa +relationship: part_of UBERON:0006849 ! scapula +created_by: AD + +[Term] +id: UBERON:4200039 +name: supraacetabular buttress +namespace: none +def: "A bony protuberance dorsal to the acetabulum on the ilium, confluent with the supraacetabular crest (when present). Acts as a bone brace to prevent excessive femoral abduction and the origin site for part of the M. iliofemoralis." [] +synonym: "acetabular buttress" BROAD [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001273 ! ilium +created_by: AD + +[Term] +id: UBERON:4200040 +name: acrocoracoid process +namespace: none +def: "Anatomical process located in the proximal region of the coracoid in avian theropods, that is hook-shaped. [NI]" [] +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0004743 ! coracoid bone +created_by: AD + +[Term] +id: UBERON:4200041 +name: aponeurosis palmaris +namespace: none +def: "The palmar aponeurosis is a fibrotendinous complex that functions as the tendinous extension of the palmaris longus, when present, and as a strong stabilizing structure for the palmar skin of the hand. It has five longitudinal slips that project into the base of each digit and a deeper transverse portion that crosses the palm at the proximal end of the metacarpals bones (from Wikipedia)." [] +is_a: UBERON:0006614 ! aponeurosis +relationship: part_of UBERON:0002398 ! manus +created_by: AD + +[Term] +id: UBERON:4200042 +name: brevis shelf +namespace: none +def: "Anatomical projection on the ilium, anchoring caudal muscles." [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001273 ! ilium +created_by: AD + +[Term] +id: UBERON:4200043 +name: brevis fossa +namespace: none +def: "Fossa located on the brevis shelf." [] +is_a: UBERON:0004704 ! bone fossa +relationship: part_of UBERON:4200042 ! brevis shelf +created_by: AD + +[Term] +id: UBERON:4200044 +name: articular surface for the calcaneum on the astragalus +namespace: none +def: "Contact surface between the calcaneum and the astragalus located on the astragalus." [] +is_a: UBERON:4100003 ! articular surface +is_a: UBERON:4200230 ! surface of bone +relationship: part_of UBERON:0002395 ! talus +created_by: AD + +[Term] +id: UBERON:4200045 +name: articular surface for the astragalus on the calcaneum +namespace: none +def: "Contact surface between the calcaneum and the astragalus located on the calcaneum. " [] +is_a: UBERON:4100003 ! articular surface +is_a: UBERON:4200230 ! surface of bone +relationship: part_of UBERON:0001450 ! calcaneus +created_by: AD + +[Term] +id: UBERON:4200046 +name: astragalo-calcaneal canal +namespace: none +def: "The astragalo-calcaneal canal forms a foramen between the articulated astragalus and calcaneum when the canal is ossified (Nesbitt, 2011). " [] +is_a: UBERON:0004705 ! fenestra +intersection_of: UBERON:0004705 ! fenestra +intersection_of: part_of UBERON:4200021 ! astragalus-calcaneum unit +relationship: part_of UBERON:4200021 ! astragalus-calcaneum unit +created_by: AD + +[Term] +id: UBERON:4200047 +name: attachment site +namespace: none +def: "Morphological struture denoting the exent of an attachment site for a soft tissue on a skeletal element." [] +is_a: UBERON:0000061 ! anatomical structure +relationship: part_of UBERON:0004765 ! skeletal element +created_by: AD + +[Term] +id: UBERON:4200048 +name: bicipital crest +namespace: none +def: "Anatomical projection that is an expansion on the proximal region of the humerus. " [] +comment: Origin of the aponeursis of humeral head of the M. biceps brachii. From Bamuel et al. 1993 +synonym: "crista bicipitalis" EXACT [] +synonym: "crista tuberculi majoris" EXACT [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0000976 ! humerus + +[Term] +id: UBERON:4200049 +name: cartilago sesamoides +namespace: none +def: "A sesamoid found in the found in the ligamentum calcanei of a wide variety of frogs. (based on Nussbaum, R. A. 1982" [] +is_a: UBERON:0001479 ! sesamoid bone +relationship: part_of UBERON:0000211 ! ligament +created_by: AD + +[Term] +id: UBERON:4200050 +name: cotyla +namespace: none +def: "A cup shaped articular surface on a bone." [] +is_a: UBERON:4100003 ! articular surface +created_by: AD + +[Term] +id: UBERON:4200051 +name: cotyloid notch +namespace: none +def: "A notch or opening in the ventral part of the acetabular rim." [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0006802 ! acetabular rim +created_by: AD + +[Term] +id: UBERON:4200052 +name: crista tibiofibularis +namespace: none +def: "Tuberosity on the posterior surface of the lateral femoral condyle" [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0000981 ! femur +created_by: AD + +[Term] +id: UBERON:4200053 +name: diphycercal tail +namespace: none +def: "An internally and externally symmetrical tail (caudal) fin" [] +comment: In Dipnoi, may be secondarily acquired from the homocercal condition by loss of the real caudal fin and the gaining of a new one from dorsal and anal elements, e.g. in Gadidae. http://www.briancoad.com/Complete%20Dictionary%20latest%20version.htm +synonym: "isocercal tail" EXACT [] +is_a: UBERON:4000164 ! caudal fin + +[Term] +id: UBERON:4200054 +name: heterocercal tail +namespace: none +def: "Type of tail (caudal) fin in which the vertebral column turns upwards into the upper lobe which is longer than the lower. Asymmetrical externally as well as internally." [] +comment: Elasmobranchii, Acipenseridae, Polyodontidae and in many larval Teleostomi. May also be used for an asymmetrical caudal fin but with epicercal defining upper lobe longer and hypocercal the lower lobe longer. http://www.briancoad.com/dictionary/DicPics/heterorercal.htm +is_a: UBERON:4000164 ! caudal fin +created_by: AD + +[Term] +id: UBERON:4200055 +name: homocercal tail +namespace: none +def: "Type of tail fin in which the vertebrae generally turn upward at the hind end of the column, but which is externally symmetrical. The fin rays of the caudal are supported by hypaxial elements" [] +comment: Found in most Teleostei. http://www.briancoad.com/dictionary/DicPics/homocercal2.htm +is_a: UBERON:4000164 ! caudal fin +created_by: AD + +[Term] +id: UBERON:4200056 +name: hypocercal tail +namespace: none +def: "Type of tail fin where the lower lobe is the longer and is supported by the vertebral column. Asymmetrical externally as well as internally" [] +comment: found in Pteraspides (fossil). +is_a: UBERON:4000164 ! caudal fin +created_by: AD + +[Term] +id: UBERON:4200060 +name: ectepicondylar foramen +namespace: none +def: "Formen present on the ectepicondyle of the humerus." [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005744 ! bone foramen +relationship: part_of UBERON:0006807 ! ectepicondyle of humerus +created_by: AD + +[Term] +id: UBERON:4200061 +name: epicercal tail +namespace: none +def: "Tail fin in which the the caudal part of the notochord tapers posterodorsally. Based on Pradel et al. 2007" [] +comment: Osteostracans are the only jawless vertebrates that share with gnathostomes an epicercal tail. +is_a: UBERON:4000164 ! caudal fin +created_by: AD + +[Term] +id: UBERON:4200062 +name: epichordal lepidotrichium +namespace: none +def: "Caudal fin lepidotrichium located upon or above the notochord." [] +is_a: UBERON:4000174 ! caudal fin lepidotrichium +created_by: AD + +[Term] +id: UBERON:4200063 +name: ectocondylar tubercle +namespace: none +def: "Posteriorly projecting bony tubercle that is located proximal to the lateral condyle of the femur." [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0000981 ! femur +created_by: AD + +[Term] +id: UBERON:4200068 +name: prepubic element +namespace: none +def: "A small plate of cartilage synchondrotically united with the pubis. Modified from Baez and Harrison 2005." [] +is_a: UBERON:0005179 ! pelvic region element +is_a: UBERON:0007844 ! cartilage element +relationship: part_of UBERON:0001271 ! pelvic girdle region +created_by: AD + +[Term] +id: UBERON:4200069 +name: sternal keel +namespace: none +def: "The vertical plate of bone or cartilage attached to the median line of the sternum. Modified from Baumel et al. 1993" [] +comment: An enlarged ossified keel is found in most, but not all, volant birds. +synonym: "carina" EXACT [] +synonym: "carina sterni" EXACT [] +synonym: "crista sterni" EXACT [] +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0000975 ! sternum +created_by: AD + +[Term] +id: UBERON:4200070 +name: median fin spine +namespace: none +def: "Fin spine that is part of a median fin." [] +is_a: UBERON:4200075 ! fin spine +is_a: UBERON:4500008 ! median fin lepidotrichium +created_by: AD + +[Term] +id: UBERON:4200075 +name: fin spine +namespace: none +def: "A spine that is part of some fin." [] +is_a: UBERON:4000172 ! lepidotrichium +created_by: AD + +[Term] +id: UBERON:4200076 +name: trunk armor pectoral fenestra +namespace: none +def: "An opening in the dermal armour of basal gnathostomes that encloses the pectoral fins. (modified from Young 2010)." [] +comment: Disjoint from 'pectoral fenestra' of Amphibians (AAO_0000779). +synonym: "trunk armour pectoral fenestra" EXACT [] +is_a: UBERON:3000755 ! pectoral girdle opening +created_by: AD + +[Term] +id: UBERON:4200077 +name: obsolete posterior iliac process +namespace: none +def: "Distinct posterior most of the two 'double heads' of the blade of the ilium. " [] +is_obsolete: true +created_by: AD + +[Term] +id: UBERON:4200078 +name: clavicular facet +namespace: none +def: "A notch for the articulation of the clavicle on other girdle elements." [] +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0007831 ! pectoral girdle skeleton +created_by: AD + +[Term] +id: UBERON:4200079 +name: dorsal iliac process +namespace: none +def: "Posteriordorsal process of the ilium." [] +comment: It spresences gives the ilium a 'double headed' appearence. +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0001273 ! ilium +created_by: AD + +[Term] +id: UBERON:4200080 +name: fibular crest +namespace: none +def: "A bony projection on the lateral side of the tibia, allowing contact between the later and the fibula." [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0001446 ! fibula +created_by: AD + +[Term] +id: UBERON:4200081 +name: hypocleideum +namespace: none +def: "Zone of bone organ located on the flat ventral side of the distal region of the furcula, serving as attachment region for pectoral muscles." [] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0007841 ! furcula +created_by: AD + +[Term] +id: UBERON:4200083 +name: postaxial centrale +namespace: none +def: "Centrale in the postaxial region of the mesopodium." [] +comment: The paried limbs have a main axis running proximodistally trough the stylopodiam element (humerus/femur). from the zeugopodium distally elements can be divided into preaxial (on the radius/tibia side) and postaxial (ulna/fibula) sides. The exact orientation of these axises vary depending on the orientation of the limb in a neutral position. +is_a: UBERON:0012131 ! centrale +created_by: AD + +[Term] +id: UBERON:4200084 +name: preaxial centrale +namespace: none +def: "Centrale in the preaxial side of the mesopodium." [] +comment: The paried limbs have a main axis running proximodistally trough the stylopodiam element (humerus/femur). from the zeugopodium distally elements can be divided into preaxial (on the radius/tibia side) and postaxial (ulna/fibula) sides. The exact orientation of these axises vary depending on the orientation of the limb in a neutral position. +is_a: UBERON:0012131 ! centrale +created_by: AD + +[Term] +id: UBERON:4200085 +name: obsolete glenoid head of scapula +namespace: none +def: "The scapula's contribution to the glenoid fossa." [] +comment: replaced by 'pars glenoidalis of scapula' +is_obsolete: true +created_by: AD + +[Term] +id: UBERON:4200086 +name: iliac neck +namespace: none +def: "A constricted region of the ilium which is dorsal to the acetabulular region. Prior to the expansion of the iliac blade." [] +synonym: "neck of ilium" EXACT [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0001273 ! ilium +created_by: AD + +[Term] +id: UBERON:4200087 +name: iliac peduncle +namespace: none +def: "Bony projection that is part of the dorsal surface of the ischim, where it articulates with the ilium." [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0001274 ! ischium +created_by: AD + +[Term] +id: UBERON:4200088 +name: iliac peduncle of the pubis +namespace: none +def: "Bony projection that is part of the dorsal surface of the pubis where it meets the ilium." [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0001275 ! pubis +created_by: AD + +[Term] +id: UBERON:4200089 +name: fibular facet of the calcaneum +namespace: none +def: "Articular surface on calcaneum for the fibula." [] +is_a: UBERON:4100003 ! articular surface +is_a: UBERON:4200230 ! surface of bone +relationship: part_of UBERON:0001450 ! calcaneus +created_by: AD + +[Term] +id: UBERON:4200090 +name: fibular facet of the astragalus +namespace: none +def: "Articular surface on the astragalus for the fibula." [] +is_a: UBERON:4100003 ! articular surface +is_a: UBERON:4200230 ! surface of bone +relationship: part_of UBERON:0002395 ! talus +created_by: AD + +[Term] +id: UBERON:4200091 +name: ethomosphenoid region +namespace: none +def: "Region consisitng of the ethmoid and sphenoid bones." [] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0011164 ! neurocranium bone +relationship: part_of UBERON:0001677 ! sphenoid bone +relationship: part_of UBERON:0001679 ! ethmoid bone +created_by: AD + +[Term] +id: UBERON:4200092 +name: flexor tubercle of ungual +namespace: none +def: "Eminence on the proximo-dorsal surface of the ungual, for attachment of flexor muscles." [] +is_a: UBERON:0013703 ! integumentary projection +relationship: part_of UBERON:3010209 ! keratinous claw +created_by: AD + +[Term] +id: UBERON:4200093 +name: guard scale +namespace: none +comment: Need definition +is_a: UBERON:0002542 ! scale +created_by: AD + +[Term] +id: UBERON:4200094 +name: inner digits of hand +namespace: none +def: "The medial most digit of the manus skeleton." [] +comment: In most taxa this is digits II-IV, but this varies based on the number of digits and thier identity in the taxa examined. +is_a: UBERON:0005451 ! segment of manus +relationship: part_of UBERON:0012140 ! digitopodium region + +[Term] +id: UBERON:4200095 +name: infraspinous process +namespace: none +def: "Process on infraspinous (region below the spine) of scapula." [] +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0006849 ! scapula +created_by: AD + +[Term] +id: UBERON:4200096 +name: intercondylar fossa +namespace: none +def: "The deep fossa between the femoral condyles in which the cruciate ligaments are attached. From Medilexicon.com" [] +is_a: UBERON:0004704 ! bone fossa +created_by: AD + +[Term] +id: UBERON:4200097 +name: intermediate spine +namespace: none +def: "Spine ventrally located on the body and not part of the pectoral, pelvic or anal fins." [] +is_a: UBERON:0004529 ! anatomical projection +created_by: Ad + +[Term] +id: UBERON:4200098 +name: ischial foot +namespace: none +def: "Expansion of the distal region of the ischium." [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0001274 ! ischium +created_by: Ad + +[Term] +id: UBERON:4200099 +name: lateral extrascapular +namespace: none +def: "The most lateral of the paired series of extrascapular bones and is the bone where the intersection of the otic, postotic and extrascapular or supratemporal canals occur." [] +is_a: UBERON:2000663 ! extrascapula +created_by: AD + +[Term] +id: UBERON:4200100 +name: latissimus dorsi process +namespace: none +def: "A bony process on the dorsal side of the proximal region of the humerus which corresponds to the insertion site of the Latissimus dorsi muscle. " [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0000976 ! humerus +created_by: AD + +[Term] +id: UBERON:4200101 +name: m.scapulotriceps +namespace: none +def: "Muscle that represents one branch of the larger triceps brachii, origination site near the glenoid fossa on the scapula." [] +is_a: UBERON:0003662 ! forelimb muscle +created_by: AD + +[Term] +id: UBERON:4200102 +name: median dorsal plate +namespace: none +def: "Dermal armour plate that is situated behind the head and constitute the dorsal most portion of the dermal shoulder girdle. Modified from Brazeau 2009, Young 2010" [] +comment: Present in some basal gnathostomes. +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:4000171 ! scapular complex +created_by: AD + +[Term] +id: UBERON:4200103 +name: median extrascapular +namespace: none +def: "The medial of the the paired series of extrascapular bones which carries the extrascapular or supratemporal canal." [] +is_a: UBERON:2000663 ! extrascapula +created_by: AD + +[Term] +id: UBERON:4200104 +name: metacarpal extensor pit +namespace: none +def: "Pits located on the proximodorsal part of metacarpals denoting the attachemnt sites for ligaments. " [] +is_a: UBERON:0004704 ! bone fossa +relationship: part_of UBERON:0002374 ! metacarpal bone +created_by: AD + +[Term] +id: UBERON:4200105 +name: nerve foramen +namespace: none +def: "Opening and/or passageway for nerve(s) in bone." [] +is_a: UBERON:0004111 ! anatomical conduit +created_by: AD + +[Term] +id: UBERON:4200106 +name: muscle scar +namespace: none +def: "A distinct region on a skeletal element that demarcates the attachment area of a muscle or tendon. Often associated with rugosity or tubercles." [] +comment: While this term is applicable to both vertebrates and invertebrates, the qualities used to demarcate muscle attachment areas between the two groups may not be identical. +synonym: "muscle insertion site" BROAD [] +is_a: UBERON:4200047 ! attachment site +created_by: AD + +[Term] +id: UBERON:4200107 +name: obturator process of ischium +namespace: none +def: "Process located on the ventral shaft of the ischium that denotes the attachment site of the pubio-ischio-femoralis externus." [] +comment: In birds the pubio-ischio-femoralis externus is sometimes called the M.oburatorius lateralis and medialis. +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001274 ! ischium +created_by: AD + +[Term] +id: UBERON:4200108 +name: outer digit of hand +namespace: none +def: "The flanking digit of the manus." [] +comment: In most taxa this is digits I and V, but this varies based on the number of digits in the manus +is_a: UBERON:0005451 ! segment of manus +relationship: part_of UBERON:0012140 ! digitopodium region +created_by: AD + +[Term] +id: UBERON:4200109 +name: outer digits of pes +namespace: none +def: "The flanking digit of the pes." [] +comment: In most taxa this is digits I and V, but this varies based on the number of digits in the pes. +is_a: UBERON:0005445 ! segment of pes +relationship: part_of UBERON:0012140 ! digitopodium region +created_by: AD + +[Term] +id: UBERON:4200110 +name: prepectoral spine +namespace: none +def: "Spine located anterior to the pectoral fin" [] +is_a: UBERON:0004529 ! anatomical projection +created_by: AD + +[Term] +id: UBERON:4200111 +name: prepelvic fin spine +namespace: none +def: "Spine located anterior to the pelvic fin and posterior to the pectoral fin. " [] +is_a: UBERON:0004529 ! anatomical projection +created_by: AD + +[Term] +id: UBERON:4200112 +name: prepectoral space +namespace: none +def: "A triangular, anteroventrally facing area developed between the preaxial margin of the humerus and the proximal limb of the ventral humeral ridge. Based on Callier et al. 2009 " [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +relationship: part_of UBERON:0000976 ! humerus +created_by: AD + +[Term] +id: UBERON:4200113 +name: predorsal scute +namespace: none +is_a: UBERON:2002294 ! fish scute +created_by: AD + +[Term] +id: UBERON:4200114 +name: prepubic process +namespace: none +def: "Elongate process forming the anteriormost part of the pubis." [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001275 ! pubis +created_by: AD + +[Term] +id: UBERON:4200115 +name: presupracleithrum +namespace: none +def: "An skeletal element of the upper pectoral girdle overlapped by the opercular and posttemporal bones." [] +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0008907 ! dermal bone +created_by: AD + +[Term] +id: UBERON:4200116 +name: pteroid +namespace: none +def: "Slender bone connected to the carpus in pterosaurs. The bone, which may have pointed forward, supports the propatagium, a membrane located between the carpus and pectoral region." [] +comment: This structure is unique to pterosaurs. There is debate wherther this structure is derived from metacarpal I, the carpal bones or is a a novel bone. See Unwin et al. 1996 +is_a: UBERON:0008962 ! forelimb bone +created_by: AD + +[Term] +id: UBERON:4200117 +name: pubic boot +namespace: none +def: "Anteroposterior expansion of the distal region of the pubis." [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0001275 ! pubis +created_by: AD + +[Term] +id: UBERON:4200118 +name: pubic peduncle +namespace: none +def: "Bony projection on the anterior portion of the ilium, anterior to the acetabulum that articulates with the pubis. " [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0001273 ! ilium +created_by: AD + +[Term] +id: UBERON:4200119 +name: pubis-ischium contact +namespace: none +def: "Contact zone between the pubis and the ischium. " [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0007830 ! pelvic girdle bone/zone +created_by: AD + +[Term] +id: UBERON:4200120 +name: puboischiadic plate +namespace: none +def: "A broad expnase of bone incorperating both the pubis and the ischium. Origin site for ventral limb muscle including the pubioishciofemoralis externus. Modified from Romer 1956 " [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0007830 ! pelvic girdle bone/zone +created_by: AD + +[Term] +id: UBERON:4200121 +name: puboischiotibialis muscle +alt_id: UBERON:0011914 +def: "A muscle that originates from the puboischaidic plate and inserts on the tibia. Acts to adduct the hindlimb. Is anterior to cloacal gland in males. Modified from De luliis and Pulera." [http://orcid.org/0000-0002-6601-2165, PHENOSCAPE:ad] +synonym: "M. puboischiotibialis" EXACT [] +synonym: "puboischiotibialis" EXACT [PHENOSCAPE:ad] +is_a: UBERON:0014794 ! pectoral appendage muscle +relationship: has_muscle_insertion UBERON:0000979 ! tibia +relationship: has_muscle_origin UBERON:4200120 ! puboischiadic plate + +[Term] +id: UBERON:4200122 +name: pubotibialis +namespace: none +def: "Originates in on the pubic cartillage and inserts on the tibia, acts to adduct the hindlimb. Modified from De luliis and Pulera." [] +is_a: UBERON:0001325 ! muscle of pelvis +relationship: has_muscle_insertion UBERON:0000979 ! tibia +relationship: has_muscle_origin UBERON:0001275 ! pubis +created_by: AD + +[Term] +id: UBERON:4200123 +name: scapular process +namespace: none +def: "The dorsal extension of the scapulocoracoid above the level of the glenoid region in basal gnathostomes. Modified from Brazeau 2009." [] +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0006849 ! scapula +created_by: AD + +[Term] +id: UBERON:4200124 +name: sternal trabecula +namespace: none +def: "Anatomical projections that are elongate processes in the mid and posterior regions of the sternum." [] +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0000975 ! sternum +created_by: AD + +[Term] +id: UBERON:4200125 +name: supraacetabular crest +namespace: none +def: "Anatomical projection (crest) located dorsaly to the acetabulum." [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001273 ! ilium +created_by: AD + +[Term] +id: UBERON:4200126 +name: supraacetabular rim +namespace: none +def: "Bony rim that is part of the supraacetabular region." [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001273 ! ilium +created_by: AD + +[Term] +id: UBERON:4200127 +name: suprascapula foramen +namespace: none +def: "The route through which structures pass between the base of the neck and the posterior scapular region. It is formed by the suprascapular notch of the scapula and the superior transverse scapular ligament. From http://medical-dictionary.thefreedictionary.com/suprascapular+foramen" [] +is_a: UBERON:0005744 ! bone foramen +relationship: part_of UBERON:0006849 ! scapula +created_by: AD + +[Term] +id: UBERON:4200128 +name: synarcual region of vertebral column +namespace: none +def: "Series of fused cervical vertebrae or vertebral elements. Based on Jeffrey C. Carrier. Biology of Sharks and Their Relatives, 2012. CRC Press." [] +comment: 'The synarcual is a structure incorporating the anterior vertebrae of the axial skeleton and occurs in vertebrate taxa such as the fossil group Placodermi and the Chondrichthyes (Holocephali, Batoidea)' DOI 10.1007/s00435-012-0169-9 +synonym: "synarcuum" EXACT [] +is_a: UBERON:0006077 ! subdivision of vertebral column +relationship: part_of UBERON:0002090 ! postcranial axial skeleton +relationship: part_of UBERON:4200129 ! synarcual region + +[Term] +id: UBERON:4200129 +name: synarcual region +namespace: none +def: "Axial subdivision that includes a series of fused cervical vertebrae or vertebral elements. Based on Jeffrey C. Carrier. Biology of Sharks and Their Relatives, 2012. CRC Press." [] +is_a: UBERON:0011676 ! subdivision of organism along main body axis +relationship: part_of UBERON:0000974 ! neck +created_by: AD + +[Term] +id: UBERON:4200130 +name: tibial facet of astragalus +namespace: none +def: "Facet for the articulation of the tibia on the astragalus (talus)." [] +is_a: UBERON:4100003 ! articular surface +is_a: UBERON:4200230 ! surface of bone +relationship: part_of UBERON:0002395 ! talus +created_by: AD + +[Term] +id: UBERON:4200131 +name: trochanteric shelf +namespace: none +def: "Anatomical projection on the anterolateral region of the proximal end of the femur." [] +comment: In Archosaurs was originally a possible insertion site for the m. iliofemoralis externus (Hutchinson 2001). In more derived dinosaurs this becomes a distinct process possibly providing the attachment surface for mm. iliotrochanteri in addition to m. iliofemoralis externus (Carrano and Hutchinson 2002) +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0000981 ! femur +created_by: AD + +[Term] +id: UBERON:4200132 +name: tuber +namespace: none +def: "Eminence or swelling on anatomical surface." [] +is_a: UBERON:0004529 ! anatomical projection +created_by: AD + +[Term] +id: UBERON:4200133 +name: crest +namespace: none +def: "A ridge or similar projection rising above the surface of an anatomical structure." [] +is_a: UBERON:0004529 ! anatomical projection +created_by: AD + +[Term] +id: UBERON:4200134 +name: antimere +namespace: none +def: "A part in the body of an organism that corresponds to an opposite symmetrical part." [] +is_a: UBERON:0000475 ! organism subdivision +created_by: AD + +[Term] +id: UBERON:4200135 +name: puboischiadic bar +namespace: none +def: "A transverse flattened or cylindrical plate in the posterior body wall opposite the anterior ends of the pelvic fins, in front of the vent and at the posterior end of the body cavity, that supports a few anterior pelvic radials and a basal cartilage, the basipterygium. from Leonard J. V. Compagno. 2001. Sharks of the World: An Annotated and Illustrated Catalogue of Shark Species Known to Date. Volume 2." [] +comment: Potentially homologous to the pelvic girdle. +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005179 ! pelvic region element +is_a: UBERON:0007844 ! cartilage element +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton +created_by: AD + +[Term] +id: UBERON:4200136 +name: triphycercal tail +namespace: none +def: "A caudal fin with three lobes." [] +comment: Found in coelacanths +is_a: UBERON:4000164 ! caudal fin +created_by: AD + +[Term] +id: UBERON:4200139 +name: palatoquadrate element +namespace: none +def: "Endochondral element that is part of the suspensorium sometimes ossifying distally as the quadrate bone and linking the basal section of the braincase to the lower jaw. " [] +comment: The palatoquadrate cartilage is the primary element of the suspensorium in larval amphibians and can ossify distally in some taxa, becoming the quadrate bone. In mammals the quadrate bone becomes the incus. +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0003108 ! suspensorium +created_by: D. B. + +[Term] +id: UBERON:4200140 +name: prepollical element +namespace: none +def: "Is a endochondral element that is part of the mesopodial skeleton and is contained within the prepollex which in some taxa appears as a pre-axial digit-like projection anterior to the first digit of the hand." [] +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0012135 ! prepollex skeleton + +[Term] +id: UBERON:4200141 +name: prehallical element +namespace: none +def: "Is a endochondral element that is part of the mesopodial skeleton and is contained within the prehallux which in some taxa appears as a pre-axial digit-like projection anterior to the first digit of the foot." [] +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:3000922 ! prehallux skeleton +created_by: DB + +[Term] +id: UBERON:4200150 +name: accessory foramen +namespace: none +def: "Foramen found on the humerus of tetrapodomorphs beyond the entepicondyle and ectepicondyle foramen. Often denoted as foramen 'c' and 'd' after Jarvik 1996" [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005744 ! bone foramen +relationship: part_of UBERON:0000976 ! humerus +created_by: AD + +[Term] +id: UBERON:4200151 +name: toe disc +namespace: none +is_a: UBERON:3000981 ! limb external integument structure +relationship: part_of UBERON:0002544 ! digit +created_by: AD + +[Term] +id: UBERON:4200152 +name: intertarsale sesamoid +namespace: none +def: "Sesamoid bone in the tarsal region." [] +synonym: "os sesamoides tarsale" BROAD [] +is_a: UBERON:0001447 ! tarsal bone +is_a: UBERON:0008000 ! sesamoid bone of pes +is_a: UBERON:0017261 ! intertarsal sesamoid +created_by: AD + +[Term] +id: UBERON:4200153 +name: metatarsal bone of digit 6 +namespace: none +is_a: UBERON:0001448 ! metatarsal bone +is_a: UBERON:4200154 ! metapodium bone 6 +intersection_of: UBERON:4200154 ! metapodium bone 6 +intersection_of: part_of UBERON:0000983 ! metatarsus region + +[Term] +id: UBERON:4200154 +name: metapodium bone 6 +namespace: none +is_a: UBERON:0003821 ! metapodium bone +intersection_of: UBERON:0003821 ! metapodium bone +intersection_of: part_of UBERON:0016866 ! digit 6 plus metapodial segment +relationship: part_of UBERON:0016866 ! digit 6 plus metapodial segment + +[Term] +id: UBERON:4200155 +name: metapodium bone 7 +namespace: none +is_a: UBERON:0003821 ! metapodium bone +intersection_of: UBERON:0003821 ! metapodium bone +intersection_of: part_of UBERON:0016867 ! digit 7 plus metapodial segment +relationship: part_of UBERON:0016867 ! digit 7 plus metapodial segment + +[Term] +id: UBERON:4200156 +name: metapodium bone 8 +namespace: none +is_a: UBERON:0003821 ! metapodium bone +intersection_of: UBERON:0003821 ! metapodium bone +intersection_of: part_of UBERON:0016868 ! digit 8 plus metapodial segment +relationship: part_of UBERON:0016868 ! digit 8 plus metapodial segment + +[Term] +id: UBERON:4200157 +name: metatarsal bone of digit 7 +namespace: none +is_a: UBERON:0001448 ! metatarsal bone +is_a: UBERON:4200155 ! metapodium bone 7 +intersection_of: UBERON:4200155 ! metapodium bone 7 +intersection_of: part_of UBERON:0000983 ! metatarsus region + +[Term] +id: UBERON:4200158 +name: metatarsal bone of digit 8 +namespace: none +is_a: UBERON:0001448 ! metatarsal bone +is_a: UBERON:4200156 ! metapodium bone 8 +intersection_of: UBERON:4200156 ! metapodium bone 8 +intersection_of: part_of UBERON:0000983 ! metatarsus region + +[Term] +id: UBERON:4200159 +name: ventral ridge system +namespace: none +def: "A collection of attached ridges on the ventrl surface of the femur consisting of the internal and fourth trochanters plus the adductor blade and crest. Most notible in early amniotes (based on Romer 1956)" [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +relationship: part_of UBERON:0000981 ! femur + +[Term] +id: UBERON:4200160 +name: mesomere (fin) +namespace: none +def: "The median series of bones supporting the pectoral fin of sarcopterygian fish. See Dipnomorpha. In the pectoral fin, the first mesomere is the humerus, the second the ulna, and the third probably the intermedium. The radius is the first preaxial radial. All other homologies are suspect. from http://palaeos.com/vertebrates/glossary" [] +is_a: UBERON:0010912 ! subdivision of skeleton +relationship: part_of UBERON:0012353 ! fin skeleton + +[Term] +id: UBERON:4200161 +name: mesomere 5 +namespace: none +is_a: UBERON:4200160 ! mesomere (fin) + +[Term] +id: UBERON:4200162 +name: mesomere 4 +namespace: none +is_a: UBERON:4200160 ! mesomere (fin) + +[Term] +id: UBERON:4200165 +name: basal scute +namespace: none +def: "A scute parte of the basal surface of the fin in Sarcopterygian fish" [] +is_a: UBERON:0008201 ! scute +relationship: part_of UBERON:0002534 ! paired fin + +[Term] +id: UBERON:4200166 +name: hindlimb interepipodial space +def: "The space between the bones of the tibia and the fibula." [] +is_a: UBERON:0000464 ! anatomical space +relationship: adjacent_to UBERON:0000979 ! tibia +relationship: adjacent_to UBERON:0001446 ! fibula +relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton + +[Term] +id: UBERON:4200167 +name: mesial pelvic ridge +namespace: none +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004529 ! anatomical projection +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton + +[Term] +id: UBERON:4200168 +name: obsolete neck of ilium +namespace: none +is_obsolete: true + +[Term] +id: UBERON:4200169 +name: process 2 +namespace: none +def: "Process on the humerus of basal tetrapods, anterior to the entepicondyle and associated with subscapularis muscle (based on Coates 1996)" [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0000976 ! humerus + +[Term] +id: UBERON:4200170 +name: process 3 +namespace: none +def: "Process on the humerus of basal tetrapods, anterior to the entepicondyle (see Coates 1996)" [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0000976 ! humerus + +[Term] +id: UBERON:4200171 +name: process 4 +namespace: none +def: "Process on the humerus of basal tetrapods, anterior to the entepicondyle (see Coates 1996)" [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0000976 ! humerus + +[Term] +id: UBERON:4200172 +name: neck of humerus +namespace: none +synonym: "anatomic neck of humerus" RELATED [FMA:23356] +synonym: "collum anatomicum (Humerus)" EXACT [FMA:23356] +synonym: "collum anatomicum humeri" EXACT LATIN [FMA:23356, FMA:TA] +synonym: "humeral neck" EXACT [] +xref: FMA:23356 +xref: NCIT:C33164 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005055 ! zone of long bone +is_a: UBERON:0018664 ! neck of bone element +intersection_of: UBERON:0001560 ! neck of organ +intersection_of: part_of UBERON:0000976 ! humerus +relationship: part_of UBERON:0004411 ! proximal epiphysis of humerus + +[Term] +id: UBERON:4200173 +name: dorsal ridge +namespace: none +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0000976 ! humerus + +[Term] +id: UBERON:4200174 +name: distal condyle of humerus +namespace: none +def: "The area encompassing the radial and ulnar condyles of the humerus." [] +is_a: UBERON:0009988 ! condyle of humerus +relationship: has_part UBERON:0010853 ! capitulum of humerus +relationship: has_part UBERON:3000784 ! ulnar condyle + +[Term] +id: UBERON:4200175 +name: supraglenoid region +namespace: none +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0006849 ! scapula + +[Term] +id: UBERON:4200176 +name: ascending process of clavicle +namespace: none +def: "A bony dorsal extension of the clavicle." [] +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001105 ! clavicle bone + +[Term] +id: UBERON:4200177 +name: supracondyle tubercle +namespace: none +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005813 ! tubercle +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0000976 ! humerus + +[Term] +id: UBERON:4200178 +name: proximal mesomere +namespace: none +is_a: UBERON:4200160 ! mesomere (fin) + +[Term] +id: UBERON:4200179 +name: manual claw +namespace: none +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0009564 ! distal limb integumentary appendage +relationship: part_of UBERON:0001442 ! skeleton of manus + +[Term] +id: UBERON:4200180 +name: semilunate carpal +namespace: none +def: "The moon shaped fusion of distal carpals 1 and 2 found in some theropod dinosaurs, permitting greater wrist mobility. " [] +is_a: UBERON:0001435 ! carpal bone + +[Term] +id: UBERON:4200181 +name: astragalus head +namespace: none +def: "The region of the astragalus/ talus that carries the articular surface for the navicular. " [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0002395 ! talus + +[Term] +id: UBERON:4200182 +name: lateral tubercle of astragalus +namespace: none +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005813 ! tubercle +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002395 ! talus + +[Term] +id: UBERON:4200183 +name: bicipital tuberosity +namespace: none +def: "The rough eminence which is on the anterior inner aspect of the neck of the radius and into which the tendon of the biceps is inserted. From http://www.merriam-webster.com/medical" [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005813 ! tubercle +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001423 ! radius bone + +[Term] +id: UBERON:4200184 +name: ulnar tuberosity +namespace: none +def: "his roughened area of bone sits distomedially at the base of the coronoid process. It is the attachment site for the brachialis muscle. From http://www.anatomyexpert.com/" [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005813 ! tubercle +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001424 ! ulna + +[Term] +id: UBERON:4200185 +name: entepicondyle fossa +namespace: none +def: "A fossa on the distal humerus proximal to the entepicondyle. " [] +is_a: UBERON:0004704 ! bone fossa +relationship: adjacent_to UBERON:0006806 ! entepicondyle of humerus +relationship: part_of UBERON:0000976 ! humerus + +[Term] +id: UBERON:4200186 +name: distal keel of metacarpal III +namespace: none +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0003647 ! metacarpal bone of digit 3 + +[Term] +id: UBERON:4200187 +name: obsolete hyperphalangy of manus +namespace: none +def: "Increase the number of phalanges per digit beyond their ancestral digital\nformulas. Modified from Cooper and Dawson 2009" [] +comment: This class was obsoleted as it did not represent an anatomical structure +is_obsolete: true + +[Term] +id: UBERON:4200188 +name: manual toe disc +namespace: none +is_a: UBERON:4200151 ! toe disc +intersection_of: UBERON:4200151 ! toe disc +intersection_of: part_of UBERON:0002389 ! manual digit +relationship: part_of UBERON:0002389 ! manual digit + +[Term] +id: UBERON:4200189 +name: pedal toe disc +namespace: none +is_a: UBERON:4200151 ! toe disc +intersection_of: UBERON:4200151 ! toe disc +intersection_of: part_of UBERON:0001466 ! pedal digit +relationship: part_of UBERON:0001466 ! pedal digit + +[Term] +id: UBERON:4200190 +name: zygosphene +def: "An articular process on anterior surface of neural arch of vertebrae which fits into zygantrum. Modified from Henderson's dictionary of Biological terms 12th Edition." [] +comment: Found in snakes and some lizards. +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0003861 ! neural arch +created_by: AD + +[Term] +id: UBERON:4200191 +name: obsolete humeral facet of the ulna +is_obsolete: true +created_by: AD + +[Term] +id: UBERON:4200192 +name: ulnar facet of the humerus +synonym: "ulnar facet" BROAD [] +is_a: UBERON:4200214 ! epipodial facet +is_a: UBERON:4200230 ! surface of bone +relationship: part_of UBERON:0000976 ! humerus +created_by: AD + +[Term] +id: UBERON:4200193 +name: posterodorsal process of ilium +def: "Anatomical project part of the blade of the ilium that projects posteriorly." [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001273 ! ilium +created_by: AD + +[Term] +id: UBERON:4200194 +name: intercentrum +def: "The anteriormost of the two possible elements found in the tetrapod centrum (when the centrum is not a single element). " [] +comment: If there is only one element that makes part of the centrum it can be either the intercentrum (some amphibians) or the pleurocentrum (amniotes) (see Hildebrand and Goslow 's Analysis of Vertebrate structure) +is_a: UBERON:0001075 ! bony vertebral centrum + +[Term] +id: UBERON:4200195 +name: pleurocentrum +def: "The posteriormost of the two possible elements found in the tetrapod centrum (when the centrum is not a single element). " [] +comment: If there is only one element that makes part of the centrum it can be either the intercentrum (some amphibians) or the pleurocentrum (amniotes) (see Hildebrand and Goslow 's Analysis of Vertebrate structure) +is_a: UBERON:0001075 ! bony vertebral centrum + +[Term] +id: UBERON:4200196 +name: atlas intercentrum +def: "The intercentrum unit of the atlas vertebra." [] +is_a: UBERON:4200194 ! intercentrum +created_by: AD + +[Term] +id: UBERON:4200197 +name: anterior humeral ridge +def: "Ridge or keel at the proximal end of the humerus. (see Laurin 1998)" [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0000976 ! humerus +created_by: AD + +[Term] +id: UBERON:4200198 +name: incisor process +def: "Process that is part of the mandible that is in close proximity to the incisor teeth. " [] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001684 ! mandible +created_by: AD + +[Term] +id: UBERON:4200199 +name: sallet sensory system +def: "Ciliary restraint system in the inner ear that uses sallets instead of the tectorial membrane." [] +synonym: "sallet restraint system" EXACT [] +is_a: UBERON:0011216 ! organ system subdivision +relationship: part_of UBERON:0002105 ! vestibulo-auditory system +created_by: AD + +[Term] +id: UBERON:4200203 +name: humeral facet on the ulna +def: "Facet on the ulna for articulation with the ulnar condyle of the humerus. " [] +is_a: UBERON:4200230 ! surface of bone +is_a: UBERON:4300038 ! facet +relationship: part_of UBERON:0001424 ! ulna + +[Term] +id: UBERON:4200204 +name: humeral facet on radius +def: "Facet on the radius for articulation with the radial condyle of the humerus. " [] +is_a: UBERON:4200230 ! surface of bone +is_a: UBERON:4300038 ! facet +relationship: part_of UBERON:0001423 ! radius bone + +[Term] +id: UBERON:4200205 +name: obsolete glenoid facet +is_obsolete: true + +[Term] +id: UBERON:4200206 +name: internal rim of coracoid foramen +def: "The internal part of the rim denoting the coracoid foramen." [] +is_a: UBERON:2001737 ! coracoid foramen + +[Term] +id: UBERON:4200207 +name: external rim of the coracoid foramen +synonym: "the external wall of the rim denoting the coracoid foramen. " EXACT [] +is_a: UBERON:2001737 ! coracoid foramen + +[Term] +id: UBERON:4200208 +name: pectoral fin intermediate radial bone +def: "Radial bone found in between the proximal and distal radial bones." [] +is_a: UBERON:2101586 ! pectoral fin radial element + +[Term] +id: UBERON:4200209 +name: postaxial process of the ulnare +def: "A projection on the postaxial region of the ulnare." [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002445 ! ulnare + +[Term] +id: UBERON:4200210 +name: postaxial process of the femur +def: "A projection on the postaxial region of the femur." [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0000981 ! femur + +[Term] +id: UBERON:4200211 +name: postaxial process of the fibula +def: "A projection on the postaxial region of the fibula." [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001446 ! fibula + +[Term] +id: UBERON:4200212 +name: pectoral process of humerus +synonym: "pectoral process" RELATED [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005813 ! tubercle +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0000976 ! humerus + +[Term] +id: UBERON:4200213 +name: deltoid process +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005813 ! tubercle +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0000976 ! humerus + +[Term] +id: UBERON:4200214 +name: epipodial facet +def: "Facets for the articulation of the epipodial (zeugopodial) elements." [] +is_a: UBERON:4300038 ! facet +relationship: part_of UBERON:0011583 ! stylopodial skeleton + +[Term] +id: UBERON:4200215 +name: suture +def: "Line of junction between two parts immovably connected. Modified from Henderson's Dictionary of Biological Terms." [] +is_a: UBERON:0002209 ! fibrous joint + +[Term] +id: UBERON:4200216 +name: fibula facet of femur +def: "Facet on the femur for the fibula." [] +synonym: "fibular fossa" BROAD [] +is_a: UBERON:4200214 ! epipodial facet +is_a: UBERON:4200230 ! surface of bone +relationship: part_of UBERON:0000981 ! femur + +[Term] +id: UBERON:4200217 +name: tibial facet of femur +def: "Facet on the femur for the tibia. " [] +is_a: UBERON:4200214 ! epipodial facet +is_a: UBERON:4200230 ! surface of bone +relationship: part_of UBERON:0000981 ! femur + +[Term] +id: UBERON:4200218 +name: musculotendinous bundle +def: "A collection of muscle and tendinous tissue. " [] +is_a: UBERON:0001134 ! skeletal muscle tissue + +[Term] +id: UBERON:4200219 +name: middle phalanx of manual digit 1 +is_a: UBERON:0003620 ! manual digit 1 phalanx +is_a: UBERON:0003864 ! middle phalanx of manus + +[Term] +id: UBERON:4200220 +name: iliac ramus +is_a: UBERON:0001273 ! ilium + +[Term] +id: UBERON:4200221 +name: growth line +def: "Distinct layer that indicate the growth of an organism." [] +is_a: UBERON:0006800 ! anatomical line + +[Term] +id: UBERON:4200222 +name: distal groove of humerus +def: "Groove along the distal margin of the humerus, ventral to the radial and ulnar condyle." [] +is_a: UBERON:0004704 ! bone fossa +relationship: part_of UBERON:0000976 ! humerus + +[Term] +id: UBERON:4200223 +name: foramen C +def: "Foramen located on the scapulocoracoid, located just behind the cleithral anteroventral process(the articulation with the cleithrum). Modified from Coates 1996" [] +is_a: UBERON:0005744 ! bone foramen +relationship: part_of UBERON:0004753 ! scapulocoracoid + +[Term] +id: UBERON:4200224 +name: columnar area +def: "Modified from Garvey et al. 2005. \" Between the dorsal ridge and the caput humeri is a futher recessed area......that clearly separates the two structures and is slightly separted from the dorsal surface of the entepicondyle, and more specifically from the unfinished bone of the entepicondyle, by a narrow ridge.\"" [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005744 ! bone foramen +relationship: part_of UBERON:0000976 ! humerus + +[Term] +id: UBERON:4200225 +name: scapulohumeralis muscle +def: "Muscle found primarily in basal sarcopterygians that runs between teh scapulocoracoid and the humerus. Its exact homologies with more derived shoulder muscles in Tetrapoda is unclear. " [] +is_a: UBERON:0001482 ! muscle of shoulder +relationship: has_muscle_insertion UBERON:0000976 ! humerus +relationship: has_muscle_origin UBERON:0004753 ! scapulocoracoid + +[Term] +id: UBERON:4200226 +name: anteroventral process of cleithrum +def: "A ramus of the celithrum that descend along the girdle. Its rounded outer surface forms the articulation surface for the clavicle while its anterior surface overlaps with the anterior process of the scapulocoracoid. " [] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004741 ! cleithrum + +[Term] +id: UBERON:4200227 +name: obsolete entepicondyle canal +is_obsolete: true + +[Term] +id: UBERON:4200228 +name: excurrent foramen of ectepicondylar foramen +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005744 ! bone foramen +relationship: part_of UBERON:4200060 ! ectepicondylar foramen + +[Term] +id: UBERON:4200229 +name: incurrent foramen of ectepicondylar foramen +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005744 ! bone foramen +relationship: part_of UBERON:4200060 ! ectepicondylar foramen + +[Term] +id: UBERON:4200230 +name: surface of bone +def: "An anatomical surface that is part of a bone" [] +synonym: "bone surface" EXACT [] +is_a: UBERON:0006984 ! anatomical surface +intersection_of: UBERON:0006984 ! anatomical surface +intersection_of: part_of UBERON:0001474 ! bone element +relationship: part_of UBERON:0001474 ! bone element + +[Term] +id: UBERON:4200231 +name: unfinished bone surface +def: "A bone surface that is not smooth and periosteal. The usual implication is that the bone was still growing, was covered in cartilage, or both. From Paleos.com" [] +is_a: UBERON:4200230 ! surface of bone + +[Term] +id: UBERON:4200232 +name: finished bone surface +def: "A smooth periosteal bone surface. " [] +is_a: UBERON:4200230 ! surface of bone + +[Term] +id: UBERON:4200233 +name: dorsal clavicular process +def: "A process, extending dorsally from the clavicular plate, that attaches to the cleithrum. Modified from Clack 2012 and Coates 1996. " [] +synonym: "ascending dorsal clavicular process" EXACT [] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001105 ! clavicle bone + +[Term] +id: UBERON:4200234 +name: precoronoid bone +is_a: UBERON:0011598 ! coronoid bone + +[Term] +id: UBERON:4200235 +name: postcoronoid bone +is_a: UBERON:0011598 ! coronoid bone + +[Term] +id: UBERON:4200236 +name: anterior coronoid bone +is_a: UBERON:0011598 ! coronoid bone + +[Term] +id: UBERON:4200237 +name: posterior coronoid bone +is_a: UBERON:0011598 ! coronoid bone + +[Term] +id: UBERON:4200238 +name: coronoid fang +is_a: UBERON:0011603 ! coronoid tooth + +[Term] +id: UBERON:4200239 +name: shagreen tooth field +is_a: UBERON:0009678 ! tooth row + +[Term] +id: UBERON:4200240 +name: fronto-ethmoidal shield +is_a: UBERON:0003113 ! dermatocranium + +[Term] +id: UBERON:4200241 +name: postrostral bone +is_a: UBERON:4200240 ! fronto-ethmoidal shield + +[Term] +id: UBERON:4200242 +name: median postrostral bone +is_a: UBERON:4200241 ! postrostral bone + +[Term] +id: UBERON:4200243 +name: surangular pit line +def: "...a v-shaped pair of ridges, each carrying three or four smallpores Modified from Ahlberg et al. 2005" [] +is_a: UBERON:0011636 ! surangular bone + +[Term] +id: UBERON:4200244 +name: anterior supraorbital bone +is_a: UBERON:2000691 ! supraorbital bone + +[Term] +id: UBERON:4200245 +name: parasymphysial plate +def: "Bone, often with tooth attachments, on the lingual side of the anterior of the lower jaw." [] +is_a: UBERON:0004768 ! bone of lower jaw + +[Term] +id: UBERON:4200246 +name: mesial parasymphysial foramen +is_a: UBERON:4200245 ! parasymphysial plate + +[Term] +id: UBERON:4200247 +name: lateral parasymphysial foramen +is_a: UBERON:4200245 ! parasymphysial plate + +[Term] +id: UBERON:4200248 +name: hypophysial region +comment: Region of the endocranium that encompasses the connection between the hypothalamus and the anterior pituitary. +synonym: "hypophyseal region" EXACT [] +is_a: UBERON:0000477 ! anatomical cluster +relationship: part_of UBERON:0002241 ! chondrocranium + +[Term] +id: UBERON:4200250 +name: meckelian bone +def: "The ossification of the Meckel's cartilage." [] +is_a: UBERON:0001708 ! jaw skeleton +relationship: develops_from UBERON:0003107 ! Meckel's cartilage + +[Term] +id: UBERON:4200251 +name: meckelian foramen +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0013685 ! foramen of skull +relationship: part_of UBERON:4200250 ! meckelian bone + +[Term] +id: UBERON:4300001 +name: obsolete maxillary saddle +namespace: none +def: " A fossa that is a depression in the proximal end of the maxilla involved in articulation with the palatine. [Baldwin, CC and Johnson GD. 1996. Interrelationships of Aulopiformes. Pages 355-404 in MLJ Stiassny, LR Parenti, and DG Johnson, (eds.), Interrelationships of fishes. Academic Press, San Diego, CA.]" [] +is_obsolete: true +replaced_by: UBERON:3000652 +created_by: WD + +[Term] +id: UBERON:4300002 +name: palatine prong +namespace: none +def: "A process on the palatine that projects outward and upward and articulates with a depression (maxillary saddle) in the proximal end of the maxilla. [Gosline WA et al, 1966; Baldwin, CC and Johnson GD. 1996. Interrelationships of Aulopiformes. Pages 355-404 in MLJ Stiassny, LR Parenti, and DG Johnson, (eds.), Interrelationships of fishes. Academic Press, San Diego, CA.]]" [] +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0001682 ! palatine bone +created_by: WD + +[Term] +id: UBERON:4300003 +name: urodermal bone +namespace: none +def: "Paired, thin dermal bones at the rear of the caudal fin skeleton, derived from scales. " [] +xref: http://www.briancoad.com/Dictionary/R-Z\,%20Abbreviations\,%20Symbols%20and%20References.htm +is_a: UBERON:0004376 ! fin bone +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:4000167 ! caudal fin skeleton +created_by: WD + +[Term] +id: UBERON:4300004 +name: scale pocket +namespace: none +def: "A continuous flap of skin with scales implanted in pockets or invaginations. [Baldwin, CC and Johnson GD. 1996. Interrelationships of Aulopiformes. Pages 355-404 in MLJ Stiassny, LR Parenti, and DG Johnson, (eds.), Interrelationships of fishes. Academic Press, San Diego, CA.]" [] +is_a: UBERON:2001951 ! skin flap +relationship: has_part UBERON:0002542 ! scale +created_by: WD + +[Term] +id: UBERON:4300005 +name: aphakic space +namespace: none +def: "The space in the pupil, which is not occupied by the lens. A rostral aphakic space may enhance the forward binocular field of vision. " [] +xref: http://www.briancoad.com/Dictionary/Introduction%20and%20A-F.htm +is_a: UBERON:0000464 ! anatomical space +relationship: part_of UBERON:0000970 ! eye +created_by: WD + +[Term] +id: UBERON:4300006 +name: scale row +namespace: none +def: "A series of scales in alignment with each other along some axis of the body. [PHENOSCAPE:bf]." [] +is_a: UBERON:0000477 ! anatomical cluster +relationship: has_part UBERON:0002542 ! scale +created_by: WD + +[Term] +id: UBERON:4300007 +name: medial pelvic process +namespace: none +def: "Process that is posteriorly oriented and medially located on the basipterygium. It is a paired projection. [PHENOSCAPE:bf]" [http://hdl.handle.net/10088/11710] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2000623 ! basipterygium bone +created_by: WD + +[Term] +id: UBERON:4300008 +name: epipleural series +namespace: none +def: "Anatomical cluster that consists of the epipleurals. [PHENOSCAPE:bf]" [] +is_a: UBERON:0000477 ! anatomical cluster +intersection_of: UBERON:0000477 ! anatomical cluster +intersection_of: composed_primarily_of UBERON:2000350 ! epipleural +relationship: composed_primarily_of UBERON:2000350 ! epipleural +created_by: WD + +[Term] +id: UBERON:4300012 +name: clavus +namespace: none +def: "A rudder-like lobe formed from extensions of dorsal and anal fin rays." [] +comment: Found in ocean sunfishes (Molidae) which lack a caudal fin. TODO: consider relationship to fin. +synonym: "pseudo-caudal fin" EXACT [] +synonym: "pseudocaudal fin" EXACT [] +is_a: UBERON:0000026 ! appendage + +[Term] +id: UBERON:4300013 +name: paired fin radial skeleton +namespace: none +synonym: "paired fin radial series" EXACT [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4440008 ! fin radial skeleton +intersection_of: UBERON:4440008 ! fin radial skeleton +intersection_of: part_of UBERON:0002534 ! paired fin +relationship: part_of UBERON:0010713 ! paired fin skeleton +created_by: WD + +[Term] +id: UBERON:4300014 +name: dorsal cleithrum +namespace: none +comment: According to Forey 1988, History of the Coelacanth fish:\n\n'In placoderms there are large overlapping plates which completely encircle the body and superficially may be matched with those in osteichthyans (Stensio, 1959; Forey, 1980; Jarvik, 1980). Thus, the anterior median ventral, anteroventral and anterior lateral of placoderms lie in the same positions as the interclavicle, clavicle (ventral cleithrum) and cleithrum (dorsal cleithrum) of osteichthyans.' +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0008907 ! dermal bone +created_by: WD + +[Term] +id: UBERON:4300015 +name: ventral cleithrum +namespace: none +comment: According to Forey 1988, History of the Coelacanth fish:\n\n'In placoderms there are large overlapping plates which completely encircle the body and superficially may be matched with those in osteichthyans (Stensio, 1959; Forey, 1980; Jarvik, 1980). Thus, the anterior median ventral, anteroventral and anterior lateral of placoderms lie in the same positions as the interclavicle, clavicle (ventral cleithrum) and cleithrum (dorsal cleithrum) of osteichthyans.' +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0008907 ! dermal bone +created_by: WD + +[Term] +id: UBERON:4300016 +name: pelvic cartilage +namespace: none +def: "Cartilage element associated with the pelvic fin in aulopiform fishes." [] +comment: Paralepidids (except Anotopterus), Alepisaurus, and evermannellids have a well-developed cartilage that extends dorsally into the body musculature from the region where the lateral pelvic-fin rays articulate with the girdle. In some young specimens, this cartilage is attached by a small rod of cartilage to the cartilage capping the central process, suggesting that it originates as part of the lateral cartilage. A similar cartilage is present in myctophids (Fig. 4A) but lacking in other aulopiforms and outgroups. [From Baldwin CC & Johnson GD (1996) Interrelationships of Aulopiformes. Interrelationships of Fishes, eds Stiassny MLJ, Parenti LR, & Johnson GD (Academic Press, San Diego, CA), pp 355-404.] +is_a: UBERON:0007844 ! cartilage element +relationship: part_of UBERON:0000152 ! pelvic fin +created_by: WD + +[Term] +id: UBERON:4300017 +name: rostrodermethmoid +namespace: none +def: "Dermal bone formed by the fusion of dermethmoids and rostral bones. [Fink, W L Weitzman, S H. 1982. Relationships of the stomiiform fishes (Teleostei), with a description of Diplophos Bulletin of The Museum of Comparative Zoology 150:31-93. http://www.biodiversitylibrary.org/part/28697]" [] +is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:0011597 ! bone of upper jaw +relationship: part_of UBERON:0003112 ! olfactory region +created_by: WD + +[Term] +id: UBERON:4300018 +name: ventral marginal cartilage +namespace: none +def: "In the clasper skeleton, a flat semicylindrical cartilage that is partially fused to the lateral edge of the axial cartilage, and forms the lateral wall of the clasper groove. [Compagno, L. 2001. Sharks of the World: An Annotated and Illustrated Catalogue of Shark Species Known to Date. Volume 2]" [] +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0007844 ! cartilage element +relationship: part_of UBERON:0010518 ! pelvic fin clasper +created_by: WD + +[Term] +id: UBERON:4300019 +name: dorsal fin basal cartilage (elasmobranchs) +namespace: none +def: "The large cartilage of the dorsal fin, on which the radials articulate distally. [Compagno 2001. Sharks of the World: An Annotated and Illustrated Catalogue of Shark Species Known to Date. Volume 2]" [] +synonym: "basal plate" BROAD [] +synonym: "dorsal fin basal plate\n" EXACT [] +is_a: UBERON:0005174 ! dorsal region element +is_a: UBERON:0007844 ! cartilage element +relationship: part_of UBERON:4000168 ! dorsal fin skeleton +created_by: WD + +[Term] +id: UBERON:4300020 +name: anal fin basal cartilage +namespace: none +def: "The large cartilage of the anal fin, on which the radials articulate distally. [Compagno 2001. Sharks of the World: An Annotated and Illustrated Catalogue of Shark Species Known to Date. Volume 2]" [] +synonym: "anal fin basal plate" EXACT [] +synonym: "anal fin base plate" BROAD [] +synonym: "basal plate" BROAD [] +is_a: UBERON:0007844 ! cartilage element +relationship: part_of UBERON:4000166 ! anal fin skeleton +created_by: WD + +[Term] +id: UBERON:4300021 +name: anterolateral plate +namespace: none +def: "Dermal bone that is part of the scapular complex in placoderm fishes. " [ISBN 3-89937-052-X [Goujet and Young\, 2004\]] +synonym: "AL" EXACT [ISBN 3-89937-052-X [Goujet and Young\, 2004\]] +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:4000171 ! scapular complex +created_by: WD + +[Term] +id: UBERON:4300022 +name: anteroventral plate +namespace: none +def: "Dermal bone that is part of the scapular complex in placoderms." [] +synonym: "AV" EXACT [] +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:4000171 ! scapular complex +created_by: WD + +[Term] +id: UBERON:4300023 +name: interolateral plate +namespace: none +def: "Dermal bone that is part of the scapular complex in placoderms." [ISBN 3-89937-052-X [Goujet and Young\, 2004\]] +synonym: "IL" EXACT [ISBN 3-89937-052-X [Goujet and Young\, 2004\]] +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:4000171 ! scapular complex +created_by: WD + +[Term] +id: UBERON:4300024 +name: spinal plate +namespace: none +def: "Dermal bone that is part of the scapular complex in placoderms." [ISBN 3-89937-052-X [Goujet and Young\, 2004\]] +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:4000171 ! scapular complex +created_by: WD + +[Term] +id: UBERON:4300025 +name: posterior dorsolateral plate +namespace: none +def: "Dermal bone that is part of the scapular complex in placoderms. " [ISBN 3-89937-052-X [Goujet and Young\, 2004\]] +synonym: "PDL" EXACT [ISBN 3-89937-052-X [Goujet and Young\, 2004\]] +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:4000171 ! scapular complex +created_by: WD + +[Term] +id: UBERON:4300026 +name: anterior ventrolateral plate +namespace: none +def: "Dermal bone that is part of the scapular complex in placoderms. " [ISBN 3-89937-052-X [Goujet and Young\, 2004\]] +synonym: "AVL" EXACT [ISBN 3-89937-052-X [Goujet and Young\, 2004\]] +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:4000171 ! scapular complex +created_by: WD + +[Term] +id: UBERON:4300028 +name: posterior ventrolateral plate +namespace: none +def: "Dermal bone that is part of the scapular complex in placoderms. " [ISBN 3-89937-052-X [Goujet and Young\, 2004\]] +synonym: "PVL" EXACT [ISBN 3-89937-052-X [Goujet and Young\, 2004\]] +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:4000171 ! scapular complex +created_by: WD + +[Term] +id: UBERON:4300029 +name: dermal neck joint +namespace: none +def: "Dermal articulation between skull and shoulder girdle localized to paired dermal neck-joint between anterior dorsolateral plate (ADL) and paranuchal (PNu) plates in placoderms." [DOI: 10.1146/annurev-earth-040809-152507 [Young\, 2010\]] +comment: TODO: add ADL and PNu classes and relationships +synonym: "cervical neck joint" EXACT [] +is_a: UBERON:0000982 ! skeletal joint +created_by: WD + +[Term] +id: UBERON:4300030 +name: flexor caudalis muscle +namespace: none +comment: TODO: needs definition. +is_a: UBERON:0014892 ! skeletal muscle organ +created_by: WD + +[Term] +id: UBERON:4300031 +name: fin web +namespace: none +def: "Membrane that connects the lepidotrichia or ceratotrichia of a fin." [] +synonym: "fin membrane" EXACT [] +is_a: UBERON:0000014 ! zone of skin +relationship: part_of UBERON:0008897 ! fin +created_by: WD + +[Term] +id: UBERON:4300032 +name: posterior dorsal fin basal cartilage (elasmobranchs) +namespace: none +def: "The large cartilage of the posterior dorsal fin, on which the radials articulate distally." [] +synonym: "posterior dorsal fin base plate" EXACT [] +is_a: UBERON:0005174 ! dorsal region element +is_a: UBERON:0007844 ! cartilage element +relationship: part_of UBERON:4100014 ! posterior dorsal fin +created_by: WD + +[Term] +id: UBERON:4300033 +name: anterior dorsal fin basal cartilage (elasmobranchs) +namespace: none +def: "The large cartilage of the anterior dorsal fin, on which the radials articulate distally." [] +synonym: "anterior dorsal fin base plate" EXACT [] +is_a: UBERON:0005174 ! dorsal region element +is_a: UBERON:0007844 ! cartilage element +relationship: part_of UBERON:4200023 ! anterior dorsal fin +created_by: WD + +[Term] +id: UBERON:4300034 +name: antorbital cartilage +namespace: none +def: "Cartilage element on the neurocranium of sawsharks and batoids, separate cartilages attached to the sides of the nasal capsules that support the sides or front of the head. [Compagno, L.J.V. Sharks of the world. An annotated and illustrated catalogue of shark species known to date. Volume 2. Bullhead, mackerel and carpet sharks (Heterodontiformes, Lamniformes and Orectolobiformes). FAO Species Catalogue for Fishery Purposes. No. 1, Vol. 2. Rome, FAO. 2001. 269p. ISBN 92-5-104543-7]" [ISBN 92-5-104543-7] +is_a: UBERON:0003932 ! cartilage element of chondrocranium +relationship: part_of UBERON:0001703 ! neurocranium +created_by: WD + +[Term] +id: UBERON:4300035 +name: supraneural element +namespace: none +def: "Endochondral element that is median and located in the dorsal skeletogenous septum between the cranium and the dorsal fin." [] +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0002090 ! postcranial axial skeleton +created_by: WD + +[Term] +id: UBERON:4300036 +name: supraneural cartilage +namespace: none +is_a: UBERON:2001457 ! postcranial axial cartilage +is_a: UBERON:4300035 ! supraneural element +intersection_of: UBERON:4300035 ! supraneural element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +created_by: WD + +[Term] +id: UBERON:4300037 +name: bony fin ray +namespace: none +def: "Fin ray that is composed of bone tissue." [] +is_a: UBERON:0004376 ! fin bone +is_a: UBERON:4400005 ! fin ray +created_by: WD + +[Term] +id: UBERON:4300038 +name: facet +namespace: none +def: "A small smooth area on a bone or other firm structure. A worn spot on a tooth, produced by chewing or grinding." [http://medical-dictionary.thefreedictionary.com/facet] +is_a: UBERON:0006984 ! anatomical surface +relationship: part_of UBERON:0004765 ! skeletal element +created_by: WD + +[Term] +id: UBERON:4300081 +name: mesopterygium element +is_a: UBERON:2101587 ! pectoral fin proximal radial element +created_by: WD + +[Term] +id: UBERON:4300082 +name: metapterygium element +is_a: UBERON:2101587 ! pectoral fin proximal radial element +created_by: WD + +[Term] +id: UBERON:4300083 +name: propterygium element +is_a: UBERON:2101587 ! pectoral fin proximal radial element +created_by: WD + +[Term] +id: UBERON:4300087 +name: mesopterygium bone +is_a: UBERON:2001587 ! pectoral fin proximal radial bone +is_a: UBERON:4300081 ! mesopterygium element +intersection_of: UBERON:4300081 ! mesopterygium element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:1500007 ! mesopterygium cartilage + +[Term] +id: UBERON:4300088 +name: metapterygium bone +is_a: UBERON:2001587 ! pectoral fin proximal radial bone +is_a: UBERON:4300082 ! metapterygium element +intersection_of: UBERON:4300082 ! metapterygium element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:4400000 ! metapterygium cartilage + +[Term] +id: UBERON:4300089 +name: propterygium bone +is_a: UBERON:2001587 ! pectoral fin proximal radial bone +is_a: UBERON:4300083 ! propterygium element +intersection_of: UBERON:4300083 ! propterygium element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:2001589 ! propterygium cartilage + +[Term] +id: UBERON:4300090 +name: X bone +def: "The x bone is a detached neural spine anterior to the neural spine of preural centrum 2." [] +comment: In fishes, accessory bones (e.g., X bone) are common in Gadiformes and rare in Zeiformes (Borden et al., 2013). +is_a: UBERON:0001076 ! neural spine +created_by: WD + +[Term] +id: UBERON:4300091 +name: Y bone +def: "The y bone is a detached neural spine anterior to the haemal spines of preural centrum 2. " [] +comment: Comment: In fishes, accessory bones (e.g., Y bone) are common in Gadiformes and rare in Zeiformes (Borden et al., 2013). +is_a: UBERON:0001076 ! neural spine +created_by: WD + +[Term] +id: UBERON:4300092 +name: mesocoracoid element +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0007831 ! pectoral girdle skeleton +created_by: WD + +[Term] +id: UBERON:4300096 +name: anal fin pterygiophore 1 +def: "Anal fin pterygiophore that is the anteriormost of the series." [] +is_a: UBERON:2001420 ! anal fin pterygiophore +created_by: WD + +[Term] +id: UBERON:4300097 +name: anal fin spine 1 +def: "Anal fin spine that is the anteriormost element of the series." [] +is_a: UBERON:2002262 ! anal fin spine +created_by: WD + +[Term] +id: UBERON:4300098 +name: anal fin spine 2 +def: "Anal fin spine that is located posteriorly adjacent to the first anal fin spine." [] +is_a: UBERON:2002262 ! anal fin spine +created_by: WD + +[Term] +id: UBERON:4300101 +name: dorsal fin ceratotrichial spine (elasmobranchs) +def: "A small to large enameloid-covered, dentine-cored spine located on the anterior margins of one or both of the dorsal fins, found on bullhead sharks (Heterodontiformes), many dogfish sharks, fossil (but not living) batoids, chimaeroids, but lost entirely or buried in the fin bases of other shark-like fishes. [def from Compagno, Sharks of the World]" [] +is_a: UBERON:0005174 ! dorsal region element +is_a: UBERON:4400001 ! ceratotrichium +relationship: part_of UBERON:4000168 ! dorsal fin skeleton +created_by: WD + +[Term] +id: UBERON:4300102 +name: postcleithral scale +def: "Scale that is posteriorly adjacent to the pectoral girdle. [Cloutier and Arratia 2004, character 183]" [] +is_a: UBERON:0007380 ! dermal scale +relationship: adjacent_to UBERON:0007831 ! pectoral girdle skeleton +created_by: WD + +[Term] +id: UBERON:4300103 +name: rudimentary pectoral fin ray +def: "Pectoral fin lepidtrichium that is small, unbranched and unsegmented." [] +is_a: UBERON:4500007 ! pectoral fin ray +created_by: WD + +[Term] +id: UBERON:4300104 +name: ectocoracoid bone +def: "A paired dermal bone in Gasterosteiformes connected with the coracoid and extending posteriorly. Has also been applied to the element below the scapula and applied to the coracoid in Dipnoi. Dictionary of Ichthyology. " [] +is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0008907 ! dermal bone +created_by: WD + +[Term] +id: UBERON:4300105 +name: caudal vertebra 1 +def: "Caudal vertebra that is the anteriormost element of the series." [] +is_a: UBERON:0001095 ! caudal vertebra +created_by: WD + +[Term] +id: UBERON:4300106 +name: ventral limb of posttemporal +def: "Zone of bone organ that is the ventral extension of the posttemporal." [] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:2000549 ! posttemporal +created_by: WD + +[Term] +id: UBERON:4300108 +name: lepidotrichial segment +def: "Zone of bone organ that is part of a lepidotrich and connected to other segments by collagen fibers. These segments lend flexibility to the lepidtrich. " [DOI 10.1002/jmor.20161] +synonym: "segment of fin ray" EXACT [] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:4000172 ! lepidotrichium +created_by: WD + +[Term] +id: UBERON:4300109 +name: proximal segment of caudal ray +def: "Lepidotrichial segment that is part of the proximal region of a caudal fin ray." [] +is_a: UBERON:4300108 ! lepidotrichial segment +relationship: part_of UBERON:4000174 ! caudal fin lepidotrichium +created_by: WD + +[Term] +id: UBERON:4300110 +name: lateral ethmoid cartilage +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:4300111 ! lateral ethmoid element +created_by: WD + +[Term] +id: UBERON:4300111 +name: lateral ethmoid element +def: "Endochondral element that separates the olfactory region from the orbit, extends medially to meet its fellow medially below the frontal bones and is bordered by the mesethmoid anteriorly. It may articulate with the autopalatine and infraorbital 1 laterally. The lateral ethmoid is paired." [ZFIN:curator] +is_a: UBERON:0010363 ! endochondral element +created_by: WD + +[Term] +id: UBERON:4300112 +name: distal segment of caudal ray +def: "Lepidotrichial segment that is part of the distal region of a caudal fin ray." [] +is_a: UBERON:4300108 ! lepidotrichial segment +relationship: part_of UBERON:4000174 ! caudal fin lepidotrichium +created_by: WD + +[Term] +id: UBERON:4300114 +name: pelvic sucking disc +def: " An adhesive disk modified from the pelvic fins in, for example, clingfishes (Gobiesocidae), gobies (Gobiidae) and snailfishes (Liparidae)." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] +synonym: "adhesive disc" EXACT [] +synonym: "pelvic fin sucking disc" EXACT [] +synonym: "sucking disc" BROAD [] +synonym: "ventral sucking disc" EXACT [] +is_a: UBERON:0000152 ! pelvic fin +created_by: WD + +[Term] +id: UBERON:4300115 +name: sucking disc +def: "Distinctive first dorsal fin taking the form of a modified oval sucker-like organ with slat-like structures that open and close to create suction and take a firm hold against the skin of larger marine animals." [http://en.wikipedia.org/wiki/Remora] +comment: For discussion of the homology of the sucking disc and dorsal fin, see Britz and Johnson (2012) (DOI: 10.1002/jmor.20063). +synonym: "sucking disk" EXACT [] +is_a: UBERON:0003097 ! dorsal fin +created_by: WD + +[Term] +id: UBERON:4300116 +name: dorsal fin ray +def: "Soft ray that is part of the dorsal fin." [] +synonym: "dorsal fin soft ray" EXACT [] +is_a: UBERON:4000177 ! dorsal fin lepidotrichium +created_by: WD + +[Term] +id: UBERON:4300117 +name: pelvic fin ray +def: "Soft ray that is part of the pelvic fin." [] +synonym: "pelvic fin soft ray" EXACT [] +is_a: UBERON:4000173 ! pelvic fin lepidotrichium +created_by: WD + +[Term] +id: UBERON:4300119 +name: glenoid region +def: " Region surrounding the glenoid fossa on the scapulocoracoid. [PHENOSCAPE:AD]" [] +is_a: UBERON:0005913 ! zone of bone organ +relationship: part_of UBERON:0004753 ! scapulocoracoid +created_by: WD + +[Term] +id: UBERON:4300120 +name: spinous region of dorsal fin +def: "Region of dorsal fin that is composed of spinous rays (vs soft rays). [PHENOSCAPE:LJ]" [] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0003097 ! dorsal fin +created_by: WD + +[Term] +id: UBERON:4300121 +name: zygantrum +def: "A fossa on the posterior median part of the neural arch of a vertebra (as of a snake) that accommodates the zygosphene of the next vertebra. [PHENOSCAPE:JL]" [] +is_a: UBERON:0004704 ! bone fossa +is_a: UBERON:0010276 ! space in vertebral column +relationship: part_of UBERON:0003861 ! neural arch +created_by: WD + +[Term] +id: UBERON:4300123 +name: pre-axial region +def: "Anatomical region lying to the anterior or dorsal side of the metapterygial axis. [PHENOSCAPE:AD]" [] +is_a: UBERON:0010538 ! paired limb/fin segment +relationship: part_of UBERON:0004710 ! pectoral appendage +created_by: WD + +[Term] +id: UBERON:4300124 +name: axis intercentrum +def: "The intercentrum unit of the axis vertebra. " [] +is_a: UBERON:4200194 ! intercentrum +created_by: WD + +[Term] +id: UBERON:4300125 +name: dorsal iliac ridge +def: "Ridge that is part of the ilium. [PHENOSCAPE:AD, WD]" [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0001273 ! ilium +created_by: WD + +[Term] +id: UBERON:4300126 +name: tectorial restraint system +def: "Tectorial restraint system is a type of ciliary restraint system for hair cells in the inner ear. In tectorial restraint systems, the tectorial membrane restrains the cilia of the hair cells by attaching either directly to ciliary tufts or indirectly through various kinds of fibrous structure (simple fibers, fibrous strands, finger-like processes, tectorial plates). [Phylogenetic Relationships of the Lizard Families: Essays Commemorating Charles L. Camp. 1988. Eds. R Estes, GK Pregill. Stanford University Press]" [] +is_a: UBERON:0000467 ! anatomical system +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0001846 ! internal ear +created_by: WD + +[Term] +id: UBERON:4300127 +name: nuchal crest +def: "Bony protuberance on the external surface of the occipital bone.[PHENOSCAPE:AD]" [] +is_a: UBERON:0004530 ! bony projection +relationship: part_of UBERON:0005902 ! occipital region +created_by: WD + +[Term] +id: UBERON:4300128 +name: sacral rib +def: "Elements of the sacrum joining true sacral vertebrae to pelvis. [12th edition of Henderson's Dictionary of Biological terms]" [] +is_a: UBERON:0002228 ! rib +is_a: UBERON:0003828 ! abdominal segment bone +is_a: UBERON:0005179 ! pelvic region element +relationship: part_of UBERON:0005473 ! sacral region +created_by: WD + +[Term] +id: UBERON:4300129 +name: dorsal pelvic gland +def: "Cloacal glands that secrete into the dorsal roof of the cloacal tube and or the anterior cloacal chamber. Found in male salamanders." [http://www.jstor.org/stable/1466953] +is_a: UBERON:0012478 ! cloacal gland +created_by: WD + +[Term] +id: UBERON:4300130 +name: lateral pelvic gland +comment: Cloacal gland present in males that secrete into the dorsolateral walls of the cloaca (between dorsal pelvic gland and anterior ventral pelvic gland clusters). Found in salamanders. {xref="http://www.jstor.org/stable/1466953"} +is_a: UBERON:0012478 ! cloacal gland +created_by: WD + +[Term] +id: UBERON:4300132 +name: glossopharyngeal nerve foramen +def: "Foramen for the passage of the glossopharyngeal nerve IX. [PHENOSCAPE:WD]" [] +synonym: "nerve foramen IX" EXACT [] +is_a: UBERON:3000051 ! braincase and otic capsule opening +created_by: WD + +[Term] +id: UBERON:4300133 +name: upper jaw symphyseal region +def: " The region of the upper jaw on or near the midline. [PHENOSCAPE:WD]" [] +synonym: "upper jaw symphysial region" EXACT [] +is_a: UBERON:0001709 ! upper jaw region +created_by: WD + +[Term] +id: UBERON:4300134 +name: lateral commissure +def: "Region of the braincase which bears the facets for the hyomandibula in fishes. This region disappears in the origin of tetrapods and the space it occipied comes to contribute to the fenestra vestibulii. Clack, JA, 2001. Ch. 23, The otoccipital region. In Major Events in Early Vertebrate Evolution. Per Ahlberg editor." [] +is_a: UBERON:0000075 ! subdivision of skeletal system +relationship: part_of UBERON:0003128 ! cranium +created_by: WD + +[Term] +id: UBERON:4300135 +name: upper jaw symphyseal tooth +def: "Tooth of the upper jaw that is adjacent to the upper jaw symphysis. [PHENOSCAPE:WD]" [] +synonym: "upper jaw symphysial tooth" EXACT [] +is_a: UBERON:0001091 ! calcareous tooth +relationship: attaches_to UBERON:0011597 ! bone of upper jaw +created_by: WD + +[Term] +id: UBERON:4300137 +name: lingual region +def: "The region of an anatomical structure (such as a tooth or jaw bone) facing the tongue. [PHENOSCAPE:WD]" [] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0000165 ! mouth +created_by: WD + +[Term] +id: UBERON:4300138 +name: labial region +def: "The region of an anatomical structure, such as a tooth or jaw bone, facing the lips.[PHENOSCAPE:WD]" [] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0000165 ! mouth +created_by: WD + +[Term] +id: UBERON:4300139 +name: posterolingual region +def: "The region of an anatomical structure, such as a tooth or jaw bone, oriented posteriorly and facing the lips.[PHENOSCAPE:WD]" [] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0000165 ! mouth +created_by: WD + +[Term] +id: UBERON:4300140 +name: mesial region +def: "The region of an anatomical structure, such as a tooth or jaw bone, facing the midline of the jaw.[PHENOSCAPE:WD]" [] +is_a: UBERON:0000064 ! organ part +created_by: WD + +[Term] +id: UBERON:4300142 +name: internal carotid foramen +def: "Foramen for the passage of the internal carotid artery." [] +is_a: UBERON:3000051 ! braincase and otic capsule opening +created_by: WD + +[Term] +id: UBERON:4300143 +name: anal fin radial skeleton +synonym: "anal fin radial series" EXACT [] +is_a: UBERON:4440008 ! fin radial skeleton +intersection_of: UBERON:4440008 ! fin radial skeleton +intersection_of: part_of UBERON:4000163 ! anal fin +relationship: part_of UBERON:4000166 ! anal fin skeleton +created_by: WD + +[Term] +id: UBERON:4300144 +name: profundus foramen +def: "Foramen for the profundus or ophthalmic nerve [PHENOSCAPE:AD]" [] +is_a: UBERON:3000051 ! braincase and otic capsule opening +created_by: WD + +[Term] +id: UBERON:4300147 +name: pectoral fin base +def: "Subdivision of organism that is the basal region of the pectoral fin. [PHENOSCAPE:WD]." [] +is_a: UBERON:0010538 ! paired limb/fin segment +relationship: part_of UBERON:0000151 ! pectoral fin +created_by: WD + +[Term] +id: UBERON:4300150 +name: gill membrane +def: "Membrane organ that is usually supported by branchiostegal rays and forms the ventral and posterior wall of the gill cavity. [PHENOSCAPE:WD]" [] +synonym: "branchiostegal membrane" RELATED [] +is_a: UBERON:0000094 ! membrane organ +created_by: WD + +[Term] +id: UBERON:4300151 +name: pelvic intercleithral cartilage +def: "Cartilage element that lies between processes of the cleithrum and pelvic girdle in gobioid fishes. Posterodorsal to the ventral end of each cleithrum is a posteriorly projecting process. The pelvic intercleithral cartilage (an unpaired, median structure) forms a bridge between the processes (From Springer, 1983)." [http://www.sil.si.edu/smithsoniancontributions/Zoology/pdf_hi/SCTZ-0390.pdf] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005179 ! pelvic region element +is_a: UBERON:0007844 ! cartilage element +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton +created_by: WD + +[Term] +id: UBERON:4300152 +name: accessory nasal sac +def: "Accessory nasal sacs are found in a variety of teleosts (Webb, 1993) and likely assist in ventilating the olfactory epithelium by transmitting pressure fluctuations associated with gill irrigation from theoral cavity to the nasal (or sensory) sac (Jakubowski,1975; Webb, 1993; Belanger et al., 2003). [def from Eastman, J. T. and Lannoo, M. J. (2004)]" [DOI:10.1002/jmor.10221] +is_a: UBERON:0000062 ! organ +created_by: WD + +[Term] +id: UBERON:4300153 +name: Sharpey's fiber +def: "Sharpey's fibres (bone fibres, or perforating fibres) are a matrix of connective tissue consisting of bundles of strong collagenous fibres connecting periosteum to bone. They are part of the outer fibrous layer of periosteum, entering into the outer circumferential and interstitial lamellae of bone tissue." [https://en.wikipedia.org/wiki/Sharpey%27s_fibres] +is_a: UBERON:0002384 ! connective tissue +created_by: WD + +[Term] +id: UBERON:4300154 +name: procurrent spur +def: "A ventrally projecting spur on the posteriormost ventral procurrent caudal ray overlapping ventrally the preceding ray in various percomorphs (Johnson, 1975)." [] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:2001830 ! caudal fin ventral procurrent ray +created_by: WD + +[Term] +id: UBERON:4300155 +name: pectoral splint +def: "Unpaired bone that covers the base of the first pectoral ray. [Filleul and Lavoué 2001]" [PMID:11386087] +is_a: UBERON:0004375 ! bone of free limb or fin +is_a: UBERON:0004376 ! fin bone +is_a: UBERON:0010741 ! bone of pectoral complex +relationship: part_of UBERON:0010710 ! pectoral fin skeleton +created_by: WD + +[Term] +id: UBERON:4300156 +name: anterodorsal crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0004753 ! scapulocoracoid +created_by: WD + +[Term] +id: UBERON:4300157 +name: midshaft +def: "Region in the middle of the shaft of a long bone (e.g. humerus, femur etc). [PHENOSCAPE:NI]" [] +is_a: UBERON:0000064 ! organ part +relationship: part_of UBERON:0002495 ! long bone +created_by: WD + +[Term] +id: UBERON:4300158 +name: ectepicondylar depression +is_a: UBERON:0004704 ! bone fossa +relationship: part_of UBERON:0006807 ! ectepicondyle of humerus +created_by: WD + +[Term] +id: UBERON:4300159 +name: obsolete larval pelvic fin +is_obsolete: true +created_by: WD + +[Term] +id: UBERON:4300160 +name: obsolete larval pectoral fin +is_obsolete: true +created_by: WD + +[Term] +id: UBERON:4300172 +name: pectoral fin bud +def: "A paired fin bud that develops into a pectoral fin." [] +is_a: UBERON:0002531 ! paired fin bud +is_a: UBERON:0005419 ! pectoral appendage bud +intersection_of: UBERON:0002531 ! paired fin bud +intersection_of: has_potential_to_develop_into UBERON:0000151 ! pectoral fin +relationship: has_potential_to_develop_into UBERON:0000151 ! pectoral fin +created_by: WD + +[Term] +id: UBERON:4300173 +name: pelvic fin bud +def: "A paired fin bud that develops into a pelvic fin." [] +is_a: UBERON:0002531 ! paired fin bud +intersection_of: UBERON:0002531 ! paired fin bud +intersection_of: has_potential_to_develop_into UBERON:0000152 ! pelvic fin +relationship: has_potential_to_develop_into UBERON:0000152 ! pelvic fin +created_by: WD + +[Term] +id: UBERON:4300174 +name: actinopterygian pyloric caecum +def: "A finger-like out-pocketing of the intestine where it meets the end of the stomach (pylorus). Also spelled cecum (ceca). Serves to aid digestion." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] +synonym: "pyloric appendage" EXACT [TAO:0002253] +synonym: "pyloric caeca" EXACT PLURAL [] +synonym: "pyloric caecum" EXACT [] +xref: TAO:0002253 +is_a: UBERON:0009854 ! digestive tract diverticulum +created_by: WD + +[Term] +id: UBERON:4300175 +name: procumbent dorsal fin spine +def: "Fin spine that precedes the dorsal fin, oriented anteriorly towards the head of the fish." [] +is_a: UBERON:2002261 ! dorsal fin spine +created_by: http://orcid.org/0000-0003-3162-7490 + +[Term] +id: UBERON:4300176 +name: parietal branch of the supraorbital canal +def: "Branch of supraorbital sensory canal that extends to the parietal." [] +is_a: UBERON:2001612 ! sensory canal +relationship: part_of UBERON:2001873 ! head sensory canal system +created_by: http://orcid.org/0000-0003-3162-7490 + +[Term] +id: UBERON:4300177 +name: replacement tooth row +def: "Tooth row consisting of replacement teeth." [] +is_a: UBERON:0009678 ! tooth row +relationship: composed_primarily_of UBERON:0018296 ! replacement tooth +created_by: http://orcid.org/0000-0003-3162-7490 + +[Term] +id: UBERON:4300178 +name: inner tooth row of dentary +def: "Dentary tooth row that is lingual in position relative to other tooth rows." [] +is_a: UBERON:2001952 ! dentary tooth row +created_by: http://orcid.org/0000-0003-3162-7490 + +[Term] +id: UBERON:4300179 +name: inner tooth row of premaxilla +def: "Tooth row on the premaxilla that is lingually located relative to other tooth rows." [] +is_a: UBERON:2001833 ! premaxillary tooth row +created_by: http://orcid.org/0000-0003-3162-7490 + +[Term] +id: UBERON:4300180 +name: isthmus +def: "The fleshy throat region of a fish which extends forward from the ventral part of the chest and narrows anteriorly, and externally separating the two gill chambers; that narrowed portion of the breast which lies between the gill chambers and separates them." [] {comment="http://www.fishbase.org/glossary/Glossary.php?q=isthmus"} +is_a: UBERON:0034929 ! external soft tissue zone +created_by: http://orcid.org/0000-0003-3162-7490 + +[Term] +id: UBERON:4300181 +name: posterior sclerotic cartilage +def: "Sclerotic cartilage that is located posterior to the eye." [] +is_a: UBERON:0010289 ! scleral cartilage +created_by: http://orcid.org/0000-0003-3162-7490 + +[Term] +id: UBERON:4300182 +name: anterior sclerotic cartilage +def: "Sclerotic cartilage that is located anterior to the eye." [] +is_a: UBERON:0010289 ! scleral cartilage +created_by: http://orcid.org/0000-0003-3162-7490 + +[Term] +id: UBERON:4300184 +name: neural spine 5 +def: "Neural spine that is associated with the fifth vertebra." [] +is_a: UBERON:0001076 ! neural spine +created_by: WD + +[Term] +id: UBERON:4300185 +name: neural spine 6 +def: "Neural spine that is associated with the sixth vertebra." [] +is_a: UBERON:0001076 ! neural spine +created_by: WD + +[Term] +id: UBERON:4300186 +name: neural spine 7 +def: "Neural spine that is associated with the seventh vertebra." [] +is_a: UBERON:0001076 ! neural spine +created_by: WD + +[Term] +id: UBERON:4300187 +name: obsolete buccopharyngeal complex +is_obsolete: true +created_by: WD + +[Term] +id: UBERON:4300188 +name: terminal scale +def: "The posteriormost scale in a scale series.[PHENOSCAPE:WD]" [] +is_a: UBERON:0007380 ! dermal scale +created_by: WD + +[Term] +id: UBERON:4300189 +name: parapophysis 3 +def: "Parapophysis that is the lateral projection from the third centrum. Parapophysis 3 is bilaterally paired.[PHENOSCAPE:WD]" [] +is_a: UBERON:0003109 ! parapophysis + +[Term] +id: UBERON:4300190 +name: claustrum element +def: "Postcranial axial skeletal element and Weberian ossicle that is located dorsal to the scaphium. The claustrum skeletal element is bilaterally paired." [] +is_a: UBERON:0010363 ! endochondral element +is_a: UBERON:2000461 ! Weberian ossicle +relationship: part_of UBERON:0002090 ! postcranial axial skeleton +created_by: WD + +[Term] +id: UBERON:4300192 +name: branched pelvic fin ray +def: "Pelvic fin lepidotrichium that is distally branched and segmented." [] +is_a: UBERON:4300117 ! pelvic fin ray +created_by: WD + +[Term] +id: UBERON:4300193 +name: unbranched anal fin ray +def: "Anal fin lepidotrichium that is not distally branched.[PHENOSCAPE:WD]" [] +is_a: UBERON:4500006 ! anal fin ray +created_by: WD + +[Term] +id: UBERON:4300194 +name: photophore +def: "A light-emitting organ which appears as luminous spots on various marine animals, including fish and cephalopods." [] {comment="https://en.wikipedia.org/wiki/Photophore"} +is_a: UBERON:0000062 ! organ +created_by: WD + +[Term] +id: UBERON:4300195 +name: rostral tubule +def: "Consists of a set of tubuli occupying the space between the external dermal bones above the dorsal and anterior wal of the nasal capsule below. Thomson and Campbell (1971). [PHENOSCAPE:AD]." [] +synonym: "rostral tubuli" EXACT PLURAL [] +is_a: UBERON:0000481 ! multi-tissue structure + +[Term] +id: UBERON:4300196 +name: processus descendens of sphenoid +synonym: "otico-sphenoid bridge" EXACT [] +is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:0001677 ! sphenoid bone + +[Term] +id: UBERON:4300197 +name: Westoll line +def: "More or less concentric lines of discontinuity in the cosmine of Dipnoi, probably due to cyclic resorption and redeposition during growth occurring on the bases of individual scales and also as large structures between headshield plates.[Fishbase]" [https://www.fishbase.de/glossary/Glossary.php?q=Westoll+lines] +synonym: "Westoll lines" EXACT PLURAL [] +is_a: UBERON:0003102 ! surface structure +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: part_of UBERON:4000087 ! cosmine + +[Term] +id: UBERON:4300198 +name: epichordal radial +def: "Radial found above the vertebral column.[PHENOSCAPE:AD]" [] +is_a: UBERON:2100271 ! radial element + +[Term] +id: UBERON:4300199 +name: postsplenial +def: "Dermal bone of the lower jaw." [] +is_a: UBERON:0004768 ! bone of lower jaw +is_a: UBERON:0008907 ! dermal bone + +[Term] +id: UBERON:4300200 +name: postparietal shield +def: "Dermal bones (postparietals, supratemporals, intertemporals, extrascapulars) posterior to the intracranial joint. Forey 1997." [ISBN:978-0-412-78480-4] +synonym: "parietal shield" EXACT [] +is_a: UBERON:0010912 ! subdivision of skeleton +relationship: part_of UBERON:0010323 ! cranial skeletal system + +[Term] +id: UBERON:4300201 +name: subepiotic fossa +def: "Fossa for epaxial musculature inserting on the braincase. Forey et al. 1996." [ISBN:978-0-12-670950-6] +is_a: UBERON:0008789 ! cranial fossa +relationship: part_of UBERON:0001703 ! neurocranium + +[Term] +id: UBERON:4300202 +name: endoskeletal cranial joint +def: "The braincase of most plesiomorphic sarcopterygians is divided by the intracranial point into ethmosphenoid and otic-occipital portions each covered by dermal bones. The function of the joint is presumably to increase the gape of the mouth rapidly during opening phases. (Forey 1997)" [ISBN:978-0-412-78480-4] +synonym: "endoskeletal intracranial joint" EXACT [] +is_a: UBERON:0000982 ! skeletal joint +relationship: part_of UBERON:0001703 ! neurocranium +created_by: WD + +[Term] +id: UBERON:4300203 +name: tectum orbitale +def: "The dorsal portion of the endocranium that covers the orbital region. Hanken and Hall (1993)" [ISBN:9780226315706] +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0001703 ! neurocranium +created_by: WD + +[Term] +id: UBERON:4300204 +name: obsolete accessory nasal sac +def: "Structures that communicate with the main olfactory chamber and may be located posterior, ventral, or dorsal to it. [De Pinna, 1996]" [] +comment: Duplicate term. +is_obsolete: true +replaced_by: UBERON:4300152 + +[Term] +id: UBERON:4300205 +name: palato-maxillary ligament +def: "Ligament between the palatine and maxilla. [Stiassny 1986]" [] +is_a: UBERON:0000211 ! ligament +relationship: connects UBERON:0001682 ! palatine bone +relationship: connects UBERON:0002397 ! maxilla +created_by: WD + +[Term] +id: UBERON:4300206 +name: mandibulo-lacrimal ligament +def: "Ligament that connects the ventromedial end of the lacrimal to the anguloarticular (or ‘mandible’). Parenti (2008)" [] +is_a: UBERON:0000211 ! ligament +relationship: connects UBERON:0004744 ! articular/anguloarticular +relationship: connects UBERON:2000223 ! infraorbital 1 +created_by: WD + +[Term] +id: UBERON:4300207 +name: submandibular bone +comment: See Gardiner (1984) for discussion of possible homology with branchiostegal rays. Gardiner, B. G. (1984). The Relationships of the palaeoniscid fishes: a review based on new specimens of Mimia and Moythomasia from the Upper Devonian of Western Australia. Bulletin of the British Museum of Natural History (Geology), 37(4), 173–428. +is_a: UBERON:0008907 ! dermal bone +relationship: part_of UBERON:0003113 ! dermatocranium +relationship: part_of UBERON:4300208 ! submandibular series +created_by: WD + +[Term] +id: UBERON:4300208 +name: submandibular series +def: "A series of plate like bones found ventrally to the jaw.[PHENOSCAPE:AD]" [] +is_a: UBERON:0000477 ! anatomical cluster +relationship: composed_primarily_of UBERON:4300207 ! submandibular bone +created_by: WD + +[Term] +id: UBERON:4300209 +name: palato-vomerine ligament +synonym: "palatovomerine ligament" EXACT [] +is_a: UBERON:0000211 ! ligament +relationship: connects UBERON:0001682 ! palatine bone +relationship: connects UBERON:0002396 ! vomer +created_by: WD + +[Term] +id: UBERON:4300210 +name: transversus epibranchialis 2 +def: "Dorsal gill-arch muscle connecting right and left epibranchial 2s. Springer and Johnson (2015)" [https://doi.org/10.1643/CI-14-152] +is_a: UBERON:0000933 ! pharyngeal muscle +created_by: WD + +[Term] +id: UBERON:4300211 +name: lateral plate +def: "Body plates on the lateral sides of the body that occur as single bilateral rows and their number is highly heritable. Bell and Richkind (1981)" [https://doi.org/10.1086/283693] +is_a: UBERON:2002053 ! bony plate + +[Term] +id: UBERON:4300212 +name: acrodin +def: "Odontoid tissue forming a cap on teeth found in teeth of actinopterygian fishes." [http://www.fishbase.org/glossary/Glossary.php?q=acrodin] +is_a: UBERON:0010365 ! odontoid tissue + +[Term] +id: UBERON:4300213 +name: supraneural 1 element +def: "Postcranial axial skeletal element located dorsal to vertebra 1." [] +is_a: UBERON:4300035 ! supraneural element +created_by: WD + +[Term] +id: UBERON:4300214 +name: supraneural 2 element +def: "Postcranial axial skeletal element located dorsal to vertebra 2." [] +is_a: UBERON:4300035 ! supraneural element +created_by: WD + +[Term] +id: UBERON:4300215 +name: supraneural 3 element +def: "Postcranial axial skeletal element located dorsal to vertebrae 3 and 4." [] +is_a: UBERON:4300035 ! supraneural element +created_by: WD + +[Term] +id: UBERON:4300216 +name: supraneural 4 element +def: "Supraneural element dorsal to neural spine 4." [] +is_a: UBERON:4300035 ! supraneural element +created_by: WD + +[Term] +id: UBERON:4300217 +name: supraneural 5 element +def: "Supraneural element dorsal to neural spine 5." [] +is_a: UBERON:4300035 ! supraneural element +created_by: WD + +[Term] +id: UBERON:4300218 +name: supraneural 6 element +def: "Supraneural element dorsal to neural spine 6." [] +is_a: UBERON:4300035 ! supraneural element +created_by: WD + +[Term] +id: UBERON:4300219 +name: supraneural 7 element +def: "Supraneural element dorsal to neural spine 7." [] +is_a: UBERON:4300035 ! supraneural element +created_by: WD + +[Term] +id: UBERON:4300220 +name: supraneural 8 element +def: "Supraneural element dorsal to neural spine 8." [] +is_a: UBERON:4300035 ! supraneural element +created_by: WD + +[Term] +id: UBERON:4300221 +name: supraneural 9 element +def: "Supraneural element dorsal to neural spine 9." [] +is_a: UBERON:4300035 ! supraneural element +created_by: WD + +[Term] +id: UBERON:4300222 +name: axilar scale +def: "Scale that is adjacent to the pelvic fin and aligned with the origin of the pelvic fin. It is typically an elongate scale.[Mattox and Toledo-Piza 2012]" [https://doi.org/10.1111/j.1096-3642.2012.00830.x] +is_a: UBERON:0007380 ! dermal scale +created_by: WD + +[Term] +id: UBERON:4300223 +name: precaudal vertebra +def: "Vertebral bone lacking hemal spines (Weitzman, 1962), refers generally to the anterior vertebral region bounding the abdominal cavity. Alternate but not quite synonymous terms are abdominal or trunk vertebrae, which bear parapophyses and ribs. In many actinopterygians dorsal to the posterior abdominal cavity there are transitional vertebrae lacking ribs but also without hemal spines or sometimes even enclosed hemal arches. The primary definition would identify these vertebrae as precaudal. Bird and Mabee, 2003." [https://doi.org/10.1002/dvdy.10387] +xref: TAO:0000263 +xref: ZFA:0000263 +is_a: UBERON:0002412 ! vertebra +is_a: UBERON:4300224 ! precaudal vertebra endochondral element +intersection_of: UBERON:4300224 ! precaudal vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +created_by: WD + +[Term] +id: UBERON:4300224 +name: precaudal vertebra endochondral element +def: "Vertebral elements lacking hemal spines (Weitzman, 1962), refers generally to the anterior vertebral region bounding the abdominal cavity. Alternate but not quite synonymous terms are abdominal or trunk vertebrae, which bear parapophyses and ribs. In many actinopterygians dorsal to the posterior abdominal cavity there are transitional vertebrae lacking ribs but also without hemal spines or sometimes even enclosed hemal arches. The primary definition would identify these vertebrae as precaudal.(Bird and Mabee, 2003)" [https://doi.org/10.1002/dvdy.10387] +is_a: UBERON:0010913 ! vertebral element + +[Term] +id: UBERON:4300225 +name: precaudal vertebra cartilage element +def: "Vertebral cartilage elements lacking hemal spines (Weitzman, 1962), refers generally to the anterior vertebral region bounding the abdominal cavity. Alternate but not quite synonymous terms are abdominal or trunk vertebrae, which bear parapophyses and ribs. In many actinopterygians dorsal to the posterior abdominal cavity there are transitional vertebrae lacking ribs but also without hemal spines or sometimes even enclosed hemal arches. The primary definition would identify these vertebrae as precaudal.(Bird and Mabee, 2003)" [https://doi.org/10.1002/dvdy.10387] +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:4300224 ! precaudal vertebra endochondral element +intersection_of: UBERON:4300224 ! precaudal vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +created_by: WD + +[Term] +id: UBERON:4300226 +name: forelimb bud mesenchyme +def: "Mesenchyme that is part of a forelimb bud." [] +is_a: UBERON:0003413 ! pectoral appendage bud mesenchyme +is_a: UBERON:0010328 ! limb bud mesenchyme +intersection_of: UBERON:0010328 ! limb bud mesenchyme +intersection_of: part_of UBERON:0005417 ! forelimb bud +relationship: part_of UBERON:0005417 ! forelimb bud +created_by: WD + +[Term] +id: UBERON:4300227 +name: hindlimb bud mesenchyme +def: "Mesenchyme that is part of a hindlimb bud." [] +is_a: UBERON:0003412 ! pelvic appendage bud mesenchyme +is_a: UBERON:0010328 ! limb bud mesenchyme +intersection_of: UBERON:0010328 ! limb bud mesenchyme +intersection_of: part_of UBERON:0005418 ! hindlimb bud +relationship: part_of UBERON:0005418 ! hindlimb bud +created_by: WD + +[Term] +id: UBERON:4300228 +name: pectoral fin bud mesenchyme +def: "Mesechyme that is part of a pectoral fin bud." [] +is_a: UBERON:0003413 ! pectoral appendage bud mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:4300172 ! pectoral fin bud +relationship: part_of UBERON:4300172 ! pectoral fin bud +created_by: WD + +[Term] +id: UBERON:4300229 +name: pelvic fin bud mesenchyme +def: "Mesechyme that is part of a pelvic fin bud." [] +is_a: UBERON:0010329 ! paired limb/fin bud mesenchyme +intersection_of: UBERON:0003104 ! mesenchyme +intersection_of: part_of UBERON:4300173 ! pelvic fin bud +relationship: part_of UBERON:4300173 ! pelvic fin bud +created_by: WD + +[Term] +id: UBERON:4300230 +name: forelimb wing bud +def: "A wing bud that develops into a wing" [] +is_a: UBERON:0005417 ! forelimb bud +intersection_of: UBERON:0005417 ! forelimb bud +intersection_of: has_potential_to_develop_into UBERON:0000024 ! forelimb wing +relationship: has_potential_to_develop_into UBERON:0000024 ! forelimb wing +created_by: WD + +[Term] +id: UBERON:4300231 +name: forelimb wing bud mesenchyme +def: "Mesenchyme that is part of a forelimb wing bud." [] +is_a: UBERON:4300226 ! forelimb bud mesenchyme +intersection_of: UBERON:4300226 ! forelimb bud mesenchyme +intersection_of: part_of UBERON:4300230 ! forelimb wing bud +relationship: part_of UBERON:4300230 ! forelimb wing bud +created_by: WD + +[Term] +id: UBERON:4300233 +name: mammiliform tooth +def: "Calcareous tooth with a hyptertrophied base." [http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252004000300008] +is_a: UBERON:0001091 ! calcareous tooth +created_by: WD + +[Term] +id: UBERON:4300234 +name: scale sheath +def: "Series of scales in which each scale envelopes or overlaps an adjacent scale.[PHENOSCAPE:WD]" [] +is_a: UBERON:0000477 ! anatomical cluster +relationship: composed_primarily_of UBERON:0007380 ! dermal scale +created_by: WD + +[Term] +id: UBERON:4300235 +name: spinoid scale +def: "A cycloid scale bearing a serrated margin; superficially similar to ctenoid scales but having spines as outgrowths of the scale as oppose to true ctenii." [http://www.fishbase.se/glossary/Glossary.php?q=spinoid+scale] +is_a: UBERON:2002285 ! cycloid scale +created_by: WD + +[Term] +id: UBERON:4300236 +name: rib of vertebra 7 +def: "Rib that articulates with the parapophysis of the seventh centrum." [] +is_a: UBERON:0002228 ! rib +created_by: WD + +[Term] +id: UBERON:4300237 +name: rib of vertebra 8 +def: "Rib that articulates with the parapophysis of the eighth centrum." [] +is_a: UBERON:0002228 ! rib +created_by: WD + +[Term] +id: UBERON:4300238 +name: pored lateral line scale +is_a: UBERON:2001824 ! lateral line scale +created_by: WD + +[Term] +id: UBERON:4300239 +name: hind flipper +def: "Hindlimb that is used to propel an animal through water." [] +synonym: "hindflipper" EXACT [] +is_a: UBERON:0002103 ! hindlimb +created_by: WD + +[Term] +id: UBERON:4300240 +name: rostral ossicle +def: "Ossicle that surrounds the sensory canals of the snout when passing from the ethmoidal commissure to the infraorbital series and have first been noticed by Nybelin [14] in Elops. From: Filleul and Lavoué. (2001). Basal teleosts and the question of elopomorph monophyly. Morphological and molecular approaches. Comptes rendus de l'Académie des sciences. Série III, Sciences de la vie. 324. 393-9. 10.1016/S0764-4469(00)01302-0." [] +is_a: UBERON:0010911 ! ossicle +created_by: WD + +[Term] +id: UBERON:4300241 +name: ethmoid commissure +def: "Sensory canal that traverses the rostral bone." [] +synonym: "ethmoid lateral line commissure" EXACT [] +is_a: UBERON:2001612 ! sensory canal +created_by: WD + +[Term] +id: UBERON:4300242 +name: lateral line scale 6 +def: "The sixth scale in the lateral line series." [] +is_a: UBERON:2001824 ! lateral line scale +created_by: WD + +[Term] +id: UBERON:4300243 +name: premaxillary tooth 2 +def: "Premaxillary tooth that is the second tooth in a premaxillary tooth series, and positioned adjacent to the symphyseal tooth." [] +is_a: UBERON:2001626 ! premaxillary tooth +created_by: WD + +[Term] +id: UBERON:4300244 +name: premaxillary tooth 3 +def: "Premaxillary tooth that is the third tooth in a premaxillary tooth series, and positioned adjacent to the second tooth." [] +is_a: UBERON:2001626 ! premaxillary tooth +created_by: WD + +[Term] +id: UBERON:4300246 +name: dentary tooth 2 +def: "Dentary tooth that is the second tooth in a dentary tooth series, and positioned adjacent to the symphyseal tooth." [] +is_a: UBERON:0011594 ! dentary tooth +created_by: WD + +[Term] +id: UBERON:4300247 +name: dentary tooth 3 +def: "Dentary tooth that is the third tooth in a dentary tooth series, and positioned adjacent to the symphyseal tooth." [] +is_a: UBERON:0011594 ! dentary tooth +created_by: WD + +[Term] +id: UBERON:4300248 +name: fused hypural 1 and 2 +def: "Single hypural element formed from the fusion of hypural 1 and 2." [] +is_a: UBERON:2000364 ! hypural +created_by: WD + +[Term] +id: UBERON:4300249 +name: lateral occipital foramen +def: "Foramen that has the exoccipital as the anterior and dorsal rim. The occipital forms the anterior rim during early development. [database_cross_reference: GOC:cvs][database_cross_reference: ORCiD:0000-0002-2244-7917][database_cross_reference: ZFIN:ZDB-PUB-961014-192]" [ZFIN:ZDB-PUB-961014-192] +xref: ZFA:0005892 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0013685 ! foramen of skull +relationship: part_of UBERON:0001693 ! exoccipital bone + +[Term] +id: UBERON:4300250 +name: ventral caudal procurrent ray 3 +is_a: UBERON:2001830 ! caudal fin ventral procurrent ray + +[Term] +id: UBERON:4300251 +name: ventral caudal procurrent ray 4 +is_a: UBERON:2001830 ! caudal fin ventral procurrent ray + +[Term] +id: UBERON:4300252 +name: ethmo-palatine cartilage +def: "The ethmo-palatine cartilage (EPC) is a distinct body situated between the posterior surface of the upper arm of the premaxilla and the anterior margin of the palatine. There is usually only a single cartilage mass lying between these bones, although that cartilage is apparently subdivided into two units in some taxa (e.g., the Old World characiform family Citharinidae, Vari, 1979:294). Vari 1989a." [https://doi.org/10.5479/si.00810282.471] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:0013765 ! digestive system element +relationship: part_of UBERON:0011085 ! palatoquadrate arch + +[Term] +id: UBERON:4300261 +name: pectoral fin hook +def: "Process that is part of the pectoral fin lepidotrichium." [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4300284 ! fin hook +relationship: part_of UBERON:4000175 ! pectoral fin lepidotrichium +created_by: http://orcid.org/0000-0003-3162-7490 + +[Term] +id: UBERON:4300262 +name: pelvic fin hook +def: "Process that is part of the pelvic fin lepidotrichium." [] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:4300284 ! fin hook +relationship: part_of UBERON:4000173 ! pelvic fin lepidotrichium +created_by: http://orcid.org/0000-0003-3162-7490 + +[Term] +id: UBERON:4300263 +name: supraneural 4 cartilage +is_a: UBERON:4300036 ! supraneural cartilage +is_a: UBERON:4300216 ! supraneural 4 element +intersection_of: UBERON:4300216 ! supraneural 4 element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:4300264 +name: supraneural 5 cartilage +is_a: UBERON:4300036 ! supraneural cartilage +is_a: UBERON:4300217 ! supraneural 5 element +intersection_of: UBERON:4300217 ! supraneural 5 element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:4300265 +name: supraneural 6 cartilage +is_a: UBERON:4300036 ! supraneural cartilage +is_a: UBERON:4300218 ! supraneural 6 element +intersection_of: UBERON:4300218 ! supraneural 6 element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:4300266 +name: supraneural 7 cartilage +is_a: UBERON:4300036 ! supraneural cartilage +is_a: UBERON:4300219 ! supraneural 7 element +intersection_of: UBERON:4300219 ! supraneural 7 element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:4300267 +name: supraneural 8 cartilage +is_a: UBERON:4300036 ! supraneural cartilage +is_a: UBERON:4300220 ! supraneural 8 element +intersection_of: UBERON:4300220 ! supraneural 8 element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:4300268 +name: supraneural 9 cartilage +is_a: UBERON:4300036 ! supraneural cartilage +is_a: UBERON:4300221 ! supraneural 9 element +intersection_of: UBERON:4300221 ! supraneural 9 element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:4300269 +name: epioccipital bridge +def: "Extension of the exoccipital that extends over the posttemporal fossa." [http://dx.doi.org/10.1590/S1679-62252010000300001] +synonym: "epiotic bridge" EXACT [] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:2001412 ! epiotic +created_by: http://orcid.org/0000-0003-3162-7490 + +[Term] +id: UBERON:4300270 +name: outer tooth row of premaxilla +def: "Tooth row on the premaxilla that is labially located relative to other tooth rows." [] +is_a: UBERON:2001833 ! premaxillary tooth row +created_by: http://orcid.org/0000-0003-3162-7490 + +[Term] +id: UBERON:4300271 +name: interneural spine cartilage +def: "Cartilage element adjacent to neural spine of preural centrum." [] +synonym: "CINPU" EXACT [] +is_a: UBERON:0007844 ! cartilage element +relationship: part_of UBERON:4000167 ! caudal fin skeleton + +[Term] +id: UBERON:4300272 +name: interhaemal spine cartilage +def: "Cartilage element adjacent to haemal spine of preural centrum." [] +synonym: "CIHPU" EXACT [] +is_a: UBERON:0007844 ! cartilage element +relationship: part_of UBERON:4000167 ! caudal fin skeleton + +[Term] +id: UBERON:4300274 +name: adipose fin ray +def: "Soft ray that is part of the adipose fin." [https://doi.org/10.1098/rspb.2013.3120] +is_a: UBERON:4500008 ! median fin lepidotrichium +intersection_of: UBERON:4000172 ! lepidotrichium +intersection_of: part_of UBERON:2000251 ! adipose fin +relationship: part_of UBERON:4500004 ! adipose fin skeleton +created_by: WD + +[Term] +id: UBERON:4300275 +name: suborbital stay +def: "A backwards extension of the third circumorbital bone (part of the lateral head/cheek skeleton, below the eye socket) across the cheek to the preoperculum, to which it is connected in most species [wikipedia]" [https://en.wikipedia.org/wiki/Scorpaeniformes] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:2001408 ! infraorbital 3 + +[Term] +id: UBERON:4300279 +name: outer tooth row of dentary +def: "Dentary tooth row that is labial in position relative to other tooth rows." [] +is_a: UBERON:2001952 ! dentary tooth row +created_by: http://orcid.org/0000-0003-3162-7490 + +[Term] +id: UBERON:4300280 +name: metapterygoid tooth +def: "Tooth that is attached to the metapterygoid." [] +synonym: "metapterygoid teeth" RELATED [] +is_a: UBERON:0001091 ! calcareous tooth +created_by: http://orcid.org/0000-0003-3162-7490 + +[Term] +id: UBERON:4300281 +name: dorsal fin hook +def: "Anatomical projection that is part of the anal fin lepidotrichium." [] +synonym: "dorsal-fin hook" EXACT [] +is_a: UBERON:4300284 ! fin hook +relationship: part_of UBERON:4000177 ! dorsal fin lepidotrichium +created_by: http://orcid.org/0000-0003-3162-7490 + +[Term] +id: UBERON:4300282 +name: dorsal myorhabdoid bone +def: "Myorhabdoid bones located dorsal to the epineurals." [] {comment="https://doi.org/10.1111/cla.12345"} +is_a: UBERON:2002127 ! myorhabdoid bone + +[Term] +id: UBERON:4300283 +name: ventral myorhabdoid bone +def: "Myorhabdoid bones located ventral to the epipleurals." [] {comment="https://doi.org/10.1111/cla.12345"} +is_a: UBERON:2002127 ! myorhabdoid bone + +[Term] +id: UBERON:4300284 +name: fin hook +def: "Anatomical projection that is part of a fin." [] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:4000172 ! lepidotrichium +created_by: http://orcid.org/0000-0003-3162-7490 + +[Term] +id: UBERON:4300285 +name: second preethmoid cartilage +def: "Cartilage element found between the preethmoid and maxilla." [] +is_a: UBERON:0003932 ! cartilage element of chondrocranium +is_a: UBERON:4300286 ! second preethmoid element +created_by: http://orcid.org/0000-0003-3162-7490 + +[Term] +id: UBERON:4300286 +name: second preethmoid element +def: "Endochondral skeletal element found between the preethmoid and maxilla." [] +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0003112 ! olfactory region +created_by: http://orcid.org/0000-0003-3162-7490 + +[Term] +id: UBERON:4300287 +name: nasal barbel +def: "Barbel that is associated with a nostril. Nasal barbels are paired." [] +is_a: UBERON:2000622 ! barbel +created_by: http://orcid.org/0000-0003-3162-7490 + +[Term] +id: UBERON:4300288 +name: rictal barbel +def: "Barbel located from the fleshy corner of the mouth." [] +comment: Definition needs review. Rictal barbels are described for trichomycterids and other catfishes. +is_a: UBERON:2000622 ! barbel +created_by: http://orcid.org/0000-0003-3162-7490 + +[Term] +id: UBERON:4400000 +name: metapterygium cartilage +namespace: none +def: "The posterior and innermost of the three principal basal cartilages in the fins of fishes." [http://www.thefreedictionary.com/Metapterygium] +comment: Relevant to Elasmobranchii and Holocephali. It is usually the longest basal and is exceptionally long in males where it is distally modified into a clasper. {xref="http://www.briancoad.com/dictionary/DicPics/metapterygium.htm"} +is_a: UBERON:2201587 ! pectoral fin proximal radial cartilage +is_a: UBERON:4300082 ! metapterygium element +intersection_of: UBERON:4300082 ! metapterygium element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:4400001 +name: ceratotrichium +namespace: none +def: "Elastoidin fin ray that is thickened, generally unbranched and found in the fins of Chondrichthyes. " [http://purl.obolibrary.org/obo/uberon/tracker/129, PHENOSCAPE:pm] +is_a: UBERON:4400006 ! elastoidin fin ray +relationship: develops_from UBERON:0003104 ! mesenchyme + +[Term] +id: UBERON:4400005 +name: fin ray +namespace: none +def: "A rod-like entity that functions in support of fin folds and fins" [PHENOSCAPE:pm] {http://www.w3.org/2000/01/rdf-schema#seeAlso="http://purl.obolibrary.org/obo/uberon/tracker/129"} +is_a: UBERON:0004765 ! skeletal element +relationship: part_of UBERON:0008897 ! fin + +[Term] +id: UBERON:4400006 +name: elastoidin fin ray +namespace: none +def: "Fin ray that is composed of elastoidin, unmineralized, and unsegmented." [http://purl.obolibrary.org/obo/uberon/tracker/129, PHENOSCAPE:pm] +is_a: UBERON:4400005 ! fin ray + +[Term] +id: UBERON:4400007 +name: camptotrichium +namespace: none +def: "Fin ray found in dipnoans that are composed of a superficial region of acellular fibrous bone, and a deep, mostly unmineralized, zone (Géraudie and Meunier 1982)" [http://purl.obolibrary.org/obo/uberon/tracker/129, PHENOSCAPE:pm] +comment: From Witten & Huysseune (2007): 'Two zones have been recognized in these camptotrichia: a superficial region of acellular fibrous bone, and a deep, mostly unmineralized, zone (Géraudie and Meunier 1982).' +is_a: UBERON:4300037 ! bony fin ray + +[Term] +id: UBERON:4400009 +name: obsolete paired fin radial +namespace: none +comment: Was already defined +is_obsolete: true +replaced_by: UBERON:1500006 + +[Term] +id: UBERON:4440008 +name: fin radial skeleton +namespace: none +synonym: "fin radial series" EXACT [] +is_a: UBERON:0010912 ! subdivision of skeleton +relationship: composed_primarily_of UBERON:2100271 ! radial element +relationship: part_of UBERON:0012353 ! fin skeleton + +[Term] +id: UBERON:4440009 +name: pectoral fin radial skeleton +namespace: none +synonym: "pectoral fin radial series" EXACT [] +is_a: UBERON:4300013 ! paired fin radial skeleton +intersection_of: UBERON:4440008 ! fin radial skeleton +intersection_of: part_of UBERON:0000151 ! pectoral fin +relationship: part_of UBERON:0010710 ! pectoral fin skeleton + +[Term] +id: UBERON:4440010 +name: pelvic fin radial skeleton +namespace: none +synonym: "pelvic fin radial series" EXACT [] +is_a: UBERON:4300013 ! paired fin radial skeleton +intersection_of: UBERON:4440008 ! fin radial skeleton +intersection_of: part_of UBERON:0000152 ! pelvic fin +relationship: part_of UBERON:0010711 ! pelvic fin skeleton + +[Term] +id: UBERON:4440011 +name: paired fin lepidotrichium +namespace: none +def: "Lepidotrichium that is part of a paired fin." [] +is_a: UBERON:0004375 ! bone of free limb or fin +is_a: UBERON:4000172 ! lepidotrichium +intersection_of: UBERON:4000172 ! lepidotrichium +intersection_of: part_of UBERON:0002534 ! paired fin +relationship: part_of UBERON:0010713 ! paired fin skeleton + +[Term] +id: UBERON:4500002 +name: upper uroneural +def: "Uroneurals that form the uppermost three uroneural series that overlap, and lie at an angle to, longer anterior ones. [http://hdl.handle.net/2246/1224]" [] +is_a: UBERON:2000602 ! uroneural +created_by: LJ + +[Term] +id: UBERON:4500003 +name: predorsal scale +def: "Scale that is part of row along the midline between the dorsal fin and the back of the skull. In counting, all scales crossing the midline are included. (Fishbase) " [] +is_a: UBERON:0007380 ! dermal scale +created_by: LMJ + +[Term] +id: UBERON:4500004 +name: adipose fin skeleton +def: "Median fin skeleton supporting the adipose fin." [] +is_a: UBERON:4000170 ! median fin skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:2000251 ! adipose fin +relationship: part_of UBERON:2000251 ! adipose fin +relationship: skeleton_of UBERON:2000251 ! adipose fin +created_by: LMJ + +[Term] +id: UBERON:4500005 +name: prenasal ossicle +def: "Tubular ossifications around extension of nasal lateral line canal in fishes; typically one or two." [] +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0008907 ! dermal bone +created_by: LMJ + +[Term] +id: UBERON:4500006 +name: anal fin ray +def: "Soft ray that is part of the anal fin." [] +synonym: "anal fin soft ray" EXACT [] +is_a: UBERON:4000176 ! anal fin lepidotrichium +created_by: LMJ + +[Term] +id: UBERON:4500007 +name: pectoral fin ray +def: "Soft ray that is part of the pectoral fin." [] +synonym: "pectoral fin soft ray" EXACT [] +is_a: UBERON:4000175 ! pectoral fin lepidotrichium +created_by: LMJ + +[Term] +id: UBERON:4500008 +name: median fin lepidotrichium +def: "Lepidotrichium that is part of a median fin." [] +is_a: UBERON:4000172 ! lepidotrichium +intersection_of: UBERON:4000172 ! lepidotrichium +intersection_of: part_of UBERON:4000162 ! median fin +relationship: part_of UBERON:4000170 ! median fin skeleton +created_by: LMJ + +[Term] +id: UBERON:4500009 +name: paired fin spine +def: "Fin spine that is part of a paired fin." [] +is_a: UBERON:4200075 ! fin spine +is_a: UBERON:4440011 ! paired fin lepidotrichium +created_by: LMJ + +[Term] +id: UBERON:4500010 +name: unbranched pectoral fin ray +def: "Pectoral fin lepidotrichium that is not distally branched." [] +synonym: "pectoral fin unbranched ray" EXACT [] +is_a: UBERON:4500007 ! pectoral fin ray +created_by: LMJ + +[Term] +id: UBERON:4500011 +name: unbranched pelvic fin ray +def: "Pelvic fin lepidotrichium that is not distally branched." [] +synonym: "pelvic fin unbranched ray" EXACT [] +is_a: UBERON:4300117 ! pelvic fin ray +created_by: LMJ + +[Term] +id: UBERON:4500012 +name: hypobranchial series +def: "Anatomical cluster that consists of the hypobranchial elements within an individual." [] +is_a: UBERON:0000477 ! anatomical cluster +intersection_of: UBERON:0000477 ! anatomical cluster +intersection_of: composed_primarily_of UBERON:2001893 ! hypobranchial element +relationship: composed_primarily_of UBERON:2001893 ! hypobranchial element +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +created_by: LMJ + +[Term] +id: UBERON:4500013 +name: pharyngobranchial series +def: "Anatomical cluster that consists of the pharyngobranchial elements within an individual." [] +is_a: UBERON:0000477 ! anatomical cluster +intersection_of: UBERON:0000477 ! anatomical cluster +intersection_of: composed_primarily_of UBERON:2001909 ! pharyngobranchial element +relationship: composed_primarily_of UBERON:2001909 ! pharyngobranchial element +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +created_by: LMJ + +[Term] +id: UBERON:4500014 +name: basibranchial series +def: "Anatomical cluster that consists of the basibranchial elements within an individual." [] +is_a: UBERON:0000477 ! anatomical cluster +intersection_of: UBERON:0000477 ! anatomical cluster +intersection_of: composed_primarily_of UBERON:0013746 ! basibranchial element +relationship: composed_primarily_of UBERON:0013746 ! basibranchial element +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +created_by: LMJ + +[Term] +id: UBERON:4500016 +name: premaxilla articular process +def: "Pharyngeal arch bone immediately posterior to the ascending process, the medial surface of which articulates with the anterior end of the maxillary." [] +comment: The change from a premaxilla in which the ascending and articular processes are separate to one in which they are firmly united has occurred many times in higher teleosts. - Gosline, 1987 (Jaw Structures and Movements in Higher Teleostean Fishes) +synonym: "articular process of the premaxilla" EXACT [] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002244 ! premaxilla +created_by: LMJ + +[Term] +id: UBERON:4500017 +name: interarcual bone +def: "Pharyngeal arch bone located between uncinate process of epibranchial 1 and pharyngobranchial 2." [] +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:2002269 ! interarcual cartilage +relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton +created_by: LMJ + +[Term] +id: UBERON:4500018 +name: premaxilla maxillary process +def: "Process of the premaxilla that extends upward, and often lies against the medial surface of the maxillary." [] +synonym: "postmaxillary process" EXACT [] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:4100000 ! skeletal element projection +relationship: part_of UBERON:0002244 ! premaxilla +created_by: LMJ + +[Term] +id: UBERON:4500020 +name: pelvic fin distal radial cartilage +def: "Pelvic fin distal radial element that is composed of cartilage tissue" [] +is_a: UBERON:1700006 ! paired fin radial cartilage +is_a: UBERON:2001538 ! pelvic radial cartilage +created_by: LMJ + +[Term] +id: UBERON:5001463 +name: manual digit 1 plus metapodial segment +def: "A subdivision of the autopod consisting of manual digit 1 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 1" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 1 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 1 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 1 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit I plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5002389 ! manual digit plus metapodial segment +is_a: UBERON:5006048 ! digit 1 plus metapodial segment +intersection_of: UBERON:5006048 ! digit 1 plus metapodial segment +intersection_of: part_of UBERON:0002398 ! manus +relationship: has_part UBERON:0001463 ! manual digit 1 +relationship: has_skeleton UBERON:5101463 ! manual digit 1 digitopodial skeleton +relationship: part_of UBERON:0002398 ! manus + +[Term] +id: UBERON:5001466 +name: pedal digit plus metapodial segment +def: "A subdivision of the autopod consisting of pedal digit plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit ray" EXACT [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:5002544 ! digit plus metapodial segment +intersection_of: UBERON:5002544 ! digit plus metapodial segment +intersection_of: part_of UBERON:0002387 ! pes +relationship: has_part UBERON:0001466 ! pedal digit +relationship: has_skeleton UBERON:5101466 ! pedal digit digitopodial skeleton +relationship: part_of UBERON:0002387 ! pes + +[Term] +id: UBERON:5002389 +name: manual digit plus metapodial segment +def: "A subdivision of the autopod consisting of manual digit plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit ray" EXACT [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:5002544 ! digit plus metapodial segment +intersection_of: UBERON:5002544 ! digit plus metapodial segment +intersection_of: part_of UBERON:0002102 ! forelimb +relationship: has_part UBERON:0002389 ! manual digit +relationship: has_skeleton UBERON:5102389 ! manual digit digitopodial skeleton +relationship: part_of UBERON:0002102 ! forelimb + +[Term] +id: UBERON:5002544 +name: digit plus metapodial segment +def: "A subdivision of the autopod consisting of digit plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "digit" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "digit ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "digit ray" EXACT [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0000475 ! organism subdivision +intersection_of: UBERON:0000475 ! organism subdivision +intersection_of: has_skeleton UBERON:5102544 ! individual digit of digitopodial skeleton +relationship: has_part UBERON:0002544 ! digit +relationship: has_skeleton UBERON:5102544 ! individual digit of digitopodial skeleton +relationship: part_of UBERON:0012140 ! digitopodium region + +[Term] +id: UBERON:5003622 +name: manual digit 2 plus metapodial segment +def: "A subdivision of the autopod consisting of manual digit 2 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 2" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 2 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 2 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 2 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit II plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5002389 ! manual digit plus metapodial segment +is_a: UBERON:5006049 ! digit 2 plus metapodial segment +intersection_of: UBERON:5006049 ! digit 2 plus metapodial segment +intersection_of: part_of UBERON:0002398 ! manus +relationship: has_part UBERON:0003622 ! manual digit 2 +relationship: has_skeleton UBERON:5103622 ! manual digit 2 digitopodial skeleton +relationship: part_of UBERON:0002398 ! manus + +[Term] +id: UBERON:5003623 +name: manual digit 3 plus metapodial segment +def: "A subdivision of the autopod consisting of manual digit 3 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 3" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 3 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 3 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 3 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit III plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5002389 ! manual digit plus metapodial segment +is_a: UBERON:5006050 ! digit 3 plus metapodial segment +intersection_of: UBERON:5006050 ! digit 3 plus metapodial segment +intersection_of: part_of UBERON:0002398 ! manus +relationship: has_part UBERON:0003623 ! manual digit 3 +relationship: has_skeleton UBERON:5103623 ! manual digit 3 digitopodial skeleton +relationship: part_of UBERON:0002398 ! manus + +[Term] +id: UBERON:5003624 +name: manual digit 4 plus metapodial segment +def: "A subdivision of the autopod consisting of manual digit 4 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 4" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 4 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 4 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 4 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit IV plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5002389 ! manual digit plus metapodial segment +is_a: UBERON:5006051 ! digit 4 plus metapodial segment +intersection_of: UBERON:5006051 ! digit 4 plus metapodial segment +intersection_of: part_of UBERON:0002398 ! manus +relationship: has_part UBERON:0003624 ! manual digit 4 +relationship: has_skeleton UBERON:5103624 ! manual digit 4 digitopodial skeleton +relationship: part_of UBERON:0002398 ! manus + +[Term] +id: UBERON:5003625 +name: manual digit 5 plus metapodial segment +def: "A subdivision of the autopod consisting of manual digit 5 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 5" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 5 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 5 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 5 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit V plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5002389 ! manual digit plus metapodial segment +is_a: UBERON:5006052 ! digit 5 plus metapodial segment +intersection_of: UBERON:5006052 ! digit 5 plus metapodial segment +intersection_of: part_of UBERON:0002398 ! manus +relationship: has_part UBERON:0003625 ! manual digit 5 +relationship: has_skeleton UBERON:5103625 ! manual digit 5 digitopodial skeleton +relationship: part_of UBERON:0002398 ! manus + +[Term] +id: UBERON:5003631 +name: pedal digit 1 plus metapodial segment +def: "A subdivision of the autopod consisting of pedal digit 1 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 1" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 1 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 1 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 1 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit I plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5001466 ! pedal digit plus metapodial segment +is_a: UBERON:5006048 ! digit 1 plus metapodial segment +intersection_of: UBERON:5006048 ! digit 1 plus metapodial segment +intersection_of: part_of UBERON:0002387 ! pes +relationship: has_part UBERON:0003631 ! pedal digit 1 +relationship: has_skeleton UBERON:5103631 ! pedal digit 1 digitopodial skeleton + +[Term] +id: UBERON:5003632 +name: pedal digit 2 plus metapodial segment +def: "A subdivision of the autopod consisting of pedal digit 2 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 2" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 2 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 2 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 2 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit II plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5001466 ! pedal digit plus metapodial segment +is_a: UBERON:5006049 ! digit 2 plus metapodial segment +intersection_of: UBERON:5006049 ! digit 2 plus metapodial segment +intersection_of: part_of UBERON:0002387 ! pes +relationship: has_part UBERON:0003632 ! pedal digit 2 +relationship: has_skeleton UBERON:5103632 ! pedal digit 2 digitopodial skeleton + +[Term] +id: UBERON:5003633 +name: pedal digit 3 plus metapodial segment +def: "A subdivision of the autopod consisting of pedal digit 3 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 3" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 3 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 3 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 3 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit III plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5001466 ! pedal digit plus metapodial segment +is_a: UBERON:5006050 ! digit 3 plus metapodial segment +intersection_of: UBERON:5006050 ! digit 3 plus metapodial segment +intersection_of: part_of UBERON:0002387 ! pes +relationship: has_part UBERON:0003633 ! pedal digit 3 +relationship: has_skeleton UBERON:5103633 ! pedal digit 3 digitopodial skeleton + +[Term] +id: UBERON:5003634 +name: pedal digit 4 plus metapodial segment +def: "A subdivision of the autopod consisting of pedal digit 4 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 4" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 4 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 4 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 4 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit IV plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5001466 ! pedal digit plus metapodial segment +is_a: UBERON:5006051 ! digit 4 plus metapodial segment +intersection_of: UBERON:5006051 ! digit 4 plus metapodial segment +intersection_of: part_of UBERON:0002387 ! pes +relationship: has_part UBERON:0003634 ! pedal digit 4 +relationship: has_skeleton UBERON:5103634 ! pedal digit 4 digitopodial skeleton + +[Term] +id: UBERON:5003635 +name: pedal digit 5 plus metapodial segment +def: "A subdivision of the autopod consisting of pedal digit 5 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 5" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 5 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 5 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 5 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit V plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5001466 ! pedal digit plus metapodial segment +is_a: UBERON:5006052 ! digit 5 plus metapodial segment +intersection_of: UBERON:5006052 ! digit 5 plus metapodial segment +intersection_of: part_of UBERON:0002387 ! pes +relationship: has_part UBERON:0003635 ! pedal digit 5 +relationship: has_skeleton UBERON:5103635 ! pedal digit 5 digitopodial skeleton + +[Term] +id: UBERON:5006048 +name: digit 1 plus metapodial segment +def: "A subdivision of the autopod consisting of digit 1 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 1" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 1 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 1 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 1 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "digit I plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5002544 ! digit plus metapodial segment +intersection_of: UBERON:5002544 ! digit plus metapodial segment +intersection_of: has_skeleton UBERON:5106048 ! digit 1 digitopodial skeleton +relationship: has_part UBERON:0006048 ! digit 1 +relationship: has_skeleton UBERON:5106048 ! digit 1 digitopodial skeleton + +[Term] +id: UBERON:5006049 +name: digit 2 plus metapodial segment +def: "A subdivision of the autopod consisting of digit 2 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 2" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 2 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 2 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 2 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "digit II plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5002544 ! digit plus metapodial segment +intersection_of: UBERON:5002544 ! digit plus metapodial segment +intersection_of: has_skeleton UBERON:5106049 ! digit 2 digitopodial skeleton +relationship: has_part UBERON:0006049 ! digit 2 +relationship: has_skeleton UBERON:5106049 ! digit 2 digitopodial skeleton + +[Term] +id: UBERON:5006050 +name: digit 3 plus metapodial segment +def: "A subdivision of the autopod consisting of digit 3 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 3" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 3 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 3 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 3 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "digit III plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5002544 ! digit plus metapodial segment +intersection_of: UBERON:5002544 ! digit plus metapodial segment +intersection_of: has_skeleton UBERON:5106050 ! digit 3 digitopodial skeleton +relationship: has_part UBERON:0006050 ! digit 3 +relationship: has_skeleton UBERON:5106050 ! digit 3 digitopodial skeleton + +[Term] +id: UBERON:5006051 +name: digit 4 plus metapodial segment +def: "A subdivision of the autopod consisting of digit 4 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 4" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 4 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 4 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 4 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "digit IV plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5002544 ! digit plus metapodial segment +intersection_of: UBERON:5002544 ! digit plus metapodial segment +intersection_of: has_skeleton UBERON:5106051 ! digit 4 digitopodial skeleton +relationship: has_part UBERON:0006051 ! digit 4 +relationship: has_skeleton UBERON:5106051 ! digit 4 digitopodial skeleton + +[Term] +id: UBERON:5006052 +name: digit 5 plus metapodial segment +def: "A subdivision of the autopod consisting of digit 5 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 5" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 5 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 5 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 5 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "digit V plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5002544 ! digit plus metapodial segment +intersection_of: UBERON:5002544 ! digit plus metapodial segment +intersection_of: has_skeleton UBERON:5106052 ! digit 5 digitopodial skeleton +relationship: has_part UBERON:0006052 ! digit 5 +relationship: has_skeleton UBERON:5106052 ! digit 5 digitopodial skeleton + +[Term] +id: UBERON:5011981 +name: manual digit 6 plus metapodial segment +def: "A subdivision of the autopod consisting of manual digit 6 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 6" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 6 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 6 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 6 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit VI plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0016866 ! digit 6 plus metapodial segment +is_a: UBERON:5002389 ! manual digit plus metapodial segment +intersection_of: UBERON:0016866 ! digit 6 plus metapodial segment +intersection_of: part_of UBERON:0002398 ! manus +relationship: has_part UBERON:0011981 ! manual digit 6 +relationship: has_skeleton UBERON:5111981 ! manual digit 6 digitopodial skeleton +relationship: part_of UBERON:0002398 ! manus + +[Term] +id: UBERON:5011982 +name: manual digit 7 plus metapodial segment +def: "A subdivision of the autopod consisting of manual digit 7 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 7" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 7 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 7 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 7 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit VII plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0016867 ! digit 7 plus metapodial segment +is_a: UBERON:5002389 ! manual digit plus metapodial segment +intersection_of: UBERON:0016867 ! digit 7 plus metapodial segment +intersection_of: part_of UBERON:0002398 ! manus +relationship: has_part UBERON:0011982 ! manual digit 7 +relationship: has_skeleton UBERON:0016877 ! digit 7 digitopodial skeleton +relationship: part_of UBERON:0002398 ! manus + +[Term] +id: UBERON:5011983 +name: manual digit 8 plus metapodial segment +def: "A subdivision of the autopod consisting of manual digit 8 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 8" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 8 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 8 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 8 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit VIII plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0016868 ! digit 8 plus metapodial segment +is_a: UBERON:5002389 ! manual digit plus metapodial segment +intersection_of: UBERON:0016868 ! digit 8 plus metapodial segment +intersection_of: part_of UBERON:0002398 ! manus +relationship: has_part UBERON:0011983 ! manual digit 8 +relationship: has_skeleton UBERON:0016878 ! digit 8 digitopodial skeleton +relationship: part_of UBERON:0002398 ! manus + +[Term] +id: UBERON:5011984 +name: pedal digit 6 plus metapodial segment +def: "A subdivision of the autopod consisting of pedal digit 6 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 6" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 6 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 6 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 6 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit VI plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5001466 ! pedal digit plus metapodial segment +intersection_of: UBERON:5001466 ! pedal digit plus metapodial segment +intersection_of: has_skeleton UBERON:5111984 ! pedal digit 6 digitopodial skeleton +relationship: has_part UBERON:0011984 ! pedal digit 6 +relationship: has_skeleton UBERON:5111984 ! pedal digit 6 digitopodial skeleton + +[Term] +id: UBERON:5012137 +name: pedal digit 7 plus metapodial segment +def: "A subdivision of the autopod consisting of pedal digit 7 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 7" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 7 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 7 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 7 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit VII plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5001466 ! pedal digit plus metapodial segment +intersection_of: UBERON:5001466 ! pedal digit plus metapodial segment +intersection_of: has_skeleton UBERON:5112137 ! pedal digit 7 digitopodial skeleton +relationship: has_part UBERON:0012137 ! pedal digit 7 +relationship: has_skeleton UBERON:5112137 ! pedal digit 7 digitopodial skeleton + +[Term] +id: UBERON:5012138 +name: pedal digit 8 plus metapodial segment +def: "A subdivision of the autopod consisting of pedal digit 8 plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 8" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 8 ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 8 digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 8 ray" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit VIII plus metapodial segment" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5001466 ! pedal digit plus metapodial segment +intersection_of: UBERON:5001466 ! pedal digit plus metapodial segment +intersection_of: has_skeleton UBERON:5112138 ! pedal digit 8 digitopodial skeleton +relationship: has_part UBERON:0012138 ! pedal digit 8 +relationship: has_skeleton UBERON:5112138 ! pedal digit 8 digitopodial skeleton + +[Term] +id: UBERON:5012260 +name: alular digit plus metapodial segment +def: "A subdivision of the autopod consisting of alular digit plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "alular digit" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "alular digit ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "alular digit digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "alular digit ray" EXACT [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:5002389 ! manual digit plus metapodial segment +intersection_of: UBERON:5002389 ! manual digit plus metapodial segment +intersection_of: has_skeleton UBERON:5112260 ! alular digit digitopodial skeleton +relationship: has_part UBERON:0012260 ! alular digit +relationship: has_skeleton UBERON:5112260 ! alular digit digitopodial skeleton + +[Term] +id: UBERON:5012261 +name: manual major digit (Aves) plus metapodial segment +def: "A subdivision of the autopod consisting of manual major digit (Aves) plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "manual major digit (Aves)" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "manual major digit (Aves) ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual major digit (Aves) digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "manual major digit (Aves) ray" EXACT [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:5002389 ! manual digit plus metapodial segment +intersection_of: UBERON:5002389 ! manual digit plus metapodial segment +intersection_of: has_skeleton UBERON:5112261 ! manual major digit (Aves) digitopodial skeleton +relationship: has_part UBERON:0012261 ! manual major digit (Aves) +relationship: has_skeleton UBERON:5112261 ! manual major digit (Aves) digitopodial skeleton + +[Term] +id: UBERON:5012262 +name: manual minor digit (Aves) plus metapodial segment +def: "A subdivision of the autopod consisting of manual minor digit (Aves) plus the region incorporating a single metapodial element. These segments are typically repeated along the pre-axiom to post-axial axis." [http://orcid.org/0000-0002-6601-2165] +synonym: "manual minor digit (Aves)" BROAD [http://orcid.org/0000-0002-6601-2165] +synonym: "manual minor digit (Aves) ( phalanges plus metapodial) plus soft tissue" BROAD COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual minor digit (Aves) digitopodial subdivision" EXACT [http://orcid.org/0000-0002-6601-2165] +synonym: "manual minor digit (Aves) ray" EXACT [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:5002389 ! manual digit plus metapodial segment +intersection_of: UBERON:5002389 ! manual digit plus metapodial segment +intersection_of: has_skeleton UBERON:5112262 ! manual minor digit (Aves) digitopodial skeleton +relationship: has_part UBERON:0012262 ! manual minor digit (Aves) +relationship: has_skeleton UBERON:5112262 ! manual minor digit (Aves) digitopodial skeleton + +[Term] +id: UBERON:5101463 +name: manual digit 1 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 1 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 1" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 1 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit I digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5102389 ! manual digit digitopodial skeleton +is_a: UBERON:5106048 ! digit 1 digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5001463 ! manual digit 1 plus metapodial segment +relationship: part_of UBERON:5001463 ! manual digit 1 plus metapodial segment +relationship: skeleton_of UBERON:5001463 ! manual digit 1 plus metapodial segment + +[Term] +id: UBERON:5101466 +name: pedal digit digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:5102544 ! individual digit of digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5001466 ! pedal digit plus metapodial segment +relationship: part_of UBERON:5001466 ! pedal digit plus metapodial segment +relationship: skeleton_of UBERON:5001466 ! pedal digit plus metapodial segment + +[Term] +id: UBERON:5102389 +name: manual digit digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:5102544 ! individual digit of digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5002389 ! manual digit plus metapodial segment +relationship: part_of UBERON:5002389 ! manual digit plus metapodial segment +relationship: skeleton_of UBERON:5002389 ! manual digit plus metapodial segment + +[Term] +id: UBERON:5102544 +name: individual digit of digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of a single digit plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "digit" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010712 ! limb skeleton subdivision +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5002544 ! digit plus metapodial segment +relationship: part_of UBERON:0012150 ! skeleton of digitopodium +relationship: part_of UBERON:5002544 ! digit plus metapodial segment +relationship: skeleton_of UBERON:5002544 ! digit plus metapodial segment + +[Term] +id: UBERON:5103622 +name: manual digit 2 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 2 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 2" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 2 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit II digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5102389 ! manual digit digitopodial skeleton +is_a: UBERON:5106049 ! digit 2 digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5003622 ! manual digit 2 plus metapodial segment +relationship: part_of UBERON:5003622 ! manual digit 2 plus metapodial segment +relationship: skeleton_of UBERON:5003622 ! manual digit 2 plus metapodial segment + +[Term] +id: UBERON:5103623 +name: manual digit 3 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 3 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 3" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 3 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit III digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5102389 ! manual digit digitopodial skeleton +is_a: UBERON:5106050 ! digit 3 digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5003623 ! manual digit 3 plus metapodial segment +relationship: part_of UBERON:5003623 ! manual digit 3 plus metapodial segment +relationship: skeleton_of UBERON:5003623 ! manual digit 3 plus metapodial segment + +[Term] +id: UBERON:5103624 +name: manual digit 4 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 4 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 4" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 4 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit IV digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5102389 ! manual digit digitopodial skeleton +is_a: UBERON:5106051 ! digit 4 digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5003624 ! manual digit 4 plus metapodial segment +relationship: part_of UBERON:5003624 ! manual digit 4 plus metapodial segment +relationship: skeleton_of UBERON:5003624 ! manual digit 4 plus metapodial segment + +[Term] +id: UBERON:5103625 +name: manual digit 5 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 5 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 5" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 5 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit V digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5102389 ! manual digit digitopodial skeleton +is_a: UBERON:5106052 ! digit 5 digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5003625 ! manual digit 5 plus metapodial segment +relationship: part_of UBERON:5003625 ! manual digit 5 plus metapodial segment +relationship: skeleton_of UBERON:5003625 ! manual digit 5 plus metapodial segment + +[Term] +id: UBERON:5103631 +name: pedal digit 1 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 1 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 1" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 1 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit I digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5101466 ! pedal digit digitopodial skeleton +is_a: UBERON:5106048 ! digit 1 digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5003631 ! pedal digit 1 plus metapodial segment +relationship: part_of UBERON:5003631 ! pedal digit 1 plus metapodial segment +relationship: skeleton_of UBERON:5003631 ! pedal digit 1 plus metapodial segment + +[Term] +id: UBERON:5103632 +name: pedal digit 2 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 2 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 2" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 2 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit II digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5101466 ! pedal digit digitopodial skeleton +is_a: UBERON:5106049 ! digit 2 digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5003632 ! pedal digit 2 plus metapodial segment +relationship: part_of UBERON:5003632 ! pedal digit 2 plus metapodial segment +relationship: skeleton_of UBERON:5003632 ! pedal digit 2 plus metapodial segment + +[Term] +id: UBERON:5103633 +name: pedal digit 3 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 3 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 3" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 3 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit III digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5101466 ! pedal digit digitopodial skeleton +is_a: UBERON:5106050 ! digit 3 digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5003633 ! pedal digit 3 plus metapodial segment +relationship: part_of UBERON:5003633 ! pedal digit 3 plus metapodial segment +relationship: skeleton_of UBERON:5003633 ! pedal digit 3 plus metapodial segment + +[Term] +id: UBERON:5103634 +name: pedal digit 4 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 4 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 4" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 4 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit IV digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5101466 ! pedal digit digitopodial skeleton +is_a: UBERON:5106051 ! digit 4 digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5003634 ! pedal digit 4 plus metapodial segment +relationship: part_of UBERON:5003634 ! pedal digit 4 plus metapodial segment +relationship: skeleton_of UBERON:5003634 ! pedal digit 4 plus metapodial segment + +[Term] +id: UBERON:5103635 +name: pedal digit 5 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 5 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 5" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 5 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit V digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5101466 ! pedal digit digitopodial skeleton +is_a: UBERON:5106052 ! digit 5 digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5003635 ! pedal digit 5 plus metapodial segment +relationship: part_of UBERON:5003635 ! pedal digit 5 plus metapodial segment +relationship: skeleton_of UBERON:5003635 ! pedal digit 5 plus metapodial segment + +[Term] +id: UBERON:5106048 +name: digit 1 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 1 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 1" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 1 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit I digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5102544 ! individual digit of digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5006048 ! digit 1 plus metapodial segment +relationship: part_of UBERON:5006048 ! digit 1 plus metapodial segment +relationship: skeleton_of UBERON:5006048 ! digit 1 plus metapodial segment + +[Term] +id: UBERON:5106049 +name: digit 2 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 2 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 2" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 2 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit II digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5102544 ! individual digit of digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5006049 ! digit 2 plus metapodial segment +relationship: part_of UBERON:5006049 ! digit 2 plus metapodial segment +relationship: skeleton_of UBERON:5006049 ! digit 2 plus metapodial segment + +[Term] +id: UBERON:5106050 +name: digit 3 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 3 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 3" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 3 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit III digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5102544 ! individual digit of digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5006050 ! digit 3 plus metapodial segment +relationship: part_of UBERON:5006050 ! digit 3 plus metapodial segment +relationship: skeleton_of UBERON:5006050 ! digit 3 plus metapodial segment + +[Term] +id: UBERON:5106051 +name: digit 4 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 4 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 4" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 4 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit IV digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5102544 ! individual digit of digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5006051 ! digit 4 plus metapodial segment +relationship: part_of UBERON:5006051 ! digit 4 plus metapodial segment +relationship: skeleton_of UBERON:5006051 ! digit 4 plus metapodial segment + +[Term] +id: UBERON:5106052 +name: digit 5 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of digit 5 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 5" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit 5 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "digit V digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5102544 ! individual digit of digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5006052 ! digit 5 plus metapodial segment +relationship: part_of UBERON:5006052 ! digit 5 plus metapodial segment +relationship: skeleton_of UBERON:5006052 ! digit 5 plus metapodial segment + +[Term] +id: UBERON:5111981 +name: manual digit 6 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 6 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 6" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 6 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit VI digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0016876 ! digit 6 digitopodial skeleton +is_a: UBERON:5102389 ! manual digit digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5011981 ! manual digit 6 plus metapodial segment +relationship: part_of UBERON:5011981 ! manual digit 6 plus metapodial segment +relationship: skeleton_of UBERON:5011981 ! manual digit 6 plus metapodial segment + +[Term] +id: UBERON:5111982 +name: manual digit 7 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 7 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 7" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 7 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit VII digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0016877 ! digit 7 digitopodial skeleton +is_a: UBERON:5102389 ! manual digit digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5011982 ! manual digit 7 plus metapodial segment +relationship: part_of UBERON:5011982 ! manual digit 7 plus metapodial segment +relationship: skeleton_of UBERON:5011982 ! manual digit 7 plus metapodial segment + +[Term] +id: UBERON:5111983 +name: manual digit 8 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual digit 8 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 8" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit 8 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual digit VIII digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:0016878 ! digit 8 digitopodial skeleton +is_a: UBERON:5102389 ! manual digit digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5011983 ! manual digit 8 plus metapodial segment +relationship: part_of UBERON:5011983 ! manual digit 8 plus metapodial segment +relationship: skeleton_of UBERON:5011983 ! manual digit 8 plus metapodial segment + +[Term] +id: UBERON:5111984 +name: pedal digit 6 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 6 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 6" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 6 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit VI digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5101466 ! pedal digit digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5011984 ! pedal digit 6 plus metapodial segment +relationship: part_of UBERON:5011984 ! pedal digit 6 plus metapodial segment +relationship: skeleton_of UBERON:5011984 ! pedal digit 6 plus metapodial segment + +[Term] +id: UBERON:5112137 +name: pedal digit 7 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 7 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 7" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 7 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit VII digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5101466 ! pedal digit digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5012137 ! pedal digit 7 plus metapodial segment +relationship: part_of UBERON:5012137 ! pedal digit 7 plus metapodial segment +relationship: skeleton_of UBERON:5012137 ! pedal digit 7 plus metapodial segment + +[Term] +id: UBERON:5112138 +name: pedal digit 8 digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of pedal digit 8 plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 8" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit 8 skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +synonym: "pedal digit VIII digitopodial skeleton" EXACT COMPARATIVE_PREFERRED [https://github.com/obophenotype/uberon/issues/458] +is_a: UBERON:5101466 ! pedal digit digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5012138 ! pedal digit 8 plus metapodial segment +relationship: part_of UBERON:5012138 ! pedal digit 8 plus metapodial segment +relationship: skeleton_of UBERON:5012138 ! pedal digit 8 plus metapodial segment + +[Term] +id: UBERON:5112260 +name: alular digit digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of alular digit plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "alular digit" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "alular digit skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:5102389 ! manual digit digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5012260 ! alular digit plus metapodial segment +relationship: part_of UBERON:5012260 ! alular digit plus metapodial segment +relationship: skeleton_of UBERON:5012260 ! alular digit plus metapodial segment + +[Term] +id: UBERON:5112261 +name: manual major digit (Aves) digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual major digit (Aves) plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "manual major digit (Aves)" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual major digit (Aves) skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:5102389 ! manual digit digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5012261 ! manual major digit (Aves) plus metapodial segment +relationship: part_of UBERON:5012261 ! manual major digit (Aves) plus metapodial segment +relationship: skeleton_of UBERON:5012261 ! manual major digit (Aves) plus metapodial segment + +[Term] +id: UBERON:5112262 +name: manual minor digit (Aves) digitopodial skeleton +def: "A subdivision of the skeleton of the autopod consisting of the phalanges of manual minor digit (Aves) plus the associated metapodial element." [http://orcid.org/0000-0002-6601-2165] +synonym: "manual minor digit (Aves)" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] +synonym: "manual minor digit (Aves) skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:5102389 ! manual digit digitopodial skeleton +intersection_of: UBERON:0010912 ! subdivision of skeleton +intersection_of: skeleton_of UBERON:5012262 ! manual minor digit (Aves) plus metapodial segment +relationship: part_of UBERON:5012262 ! manual minor digit (Aves) plus metapodial segment +relationship: skeleton_of UBERON:5012262 ! manual minor digit (Aves) plus metapodial segment + +[Term] +id: UBERON:6000000 +name: embryonic germ layer derivative +synonym: "germ layer derivative" EXACT [FBbt:00000000] +xref: FBbt:00000000 +is_a: UBERON:0002050 ! embryonic structure +relationship: develops_from UBERON:0000923 ! germ layer + +[Term] +id: UBERON:6000002 +name: panarthropod tagma +def: "The three main divisions of the whole organism formed from groups of segments." [FBC:gg] +xref: FBbt:00000002 +is_a: UBERON:6057001 ! insect anterior-posterior subdivision of organism + +[Term] +id: UBERON:6000004 +name: panarthropod head +xref: FBbt:00000004 +is_a: UBERON:0000033 ! head + +[Term] +id: UBERON:6000005 +name: insect ocular segment +def: "Head segment derived from the second embryonic segment (between the labral and antennal segments). In the larva, this segment includes Bolwig's organ." [FlyBase:FBrf0055841, FlyBase:FBrf0075072] +synonym: "acron" RELATED [] +xref: FBbt:00000005 +is_a: UBERON:6000007 ! procephalic segment + +[Term] +id: UBERON:6000006 +name: head segment +def: "Any segment that is part of some head." [UBERON:cjm] +xref: FBbt:00000006 +is_a: UBERON:0000914 ! organismal segment +intersection_of: UBERON:0000914 ! organismal segment +intersection_of: part_of UBERON:0000033 ! head +relationship: part_of UBERON:0000033 ! head + +[Term] +id: UBERON:6000007 +name: procephalic segment +def: "A segment that is anterior to the gnathal segments." [FBC:gg] +synonym: "cephalic segment" RELATED [] +synonym: "pregnathal segment" EXACT [] +synonym: "preoral segment" EXACT [] +synonym: "procephalon" RELATED [] +xref: FBbt:00000007 +is_a: UBERON:6000006 ! head segment + +[Term] +id: UBERON:6000008 +name: labral segment +def: "Procephalic segment anterior to the antennal segment. In the adult it bears the clypeo-labrum." [FlyBase:FBrf0075072, FlyBase:FBrf0089570] +synonym: "clypeo-labrum" RELATED [] +xref: FBbt:00000008 +is_a: UBERON:6000007 ! procephalic segment + +[Term] +id: UBERON:6000009 +name: antennal segment +def: "Segment anterior to the intercalary segment. In the adult it bears the antennae." [FBC:DOS] +xref: FBbt:00000009 +is_a: UBERON:6000007 ! procephalic segment + +[Term] +id: UBERON:6000011 +name: insect gnathal segment +def: "The head segments that develop posterior to the embryonic/larval mouth." [FBC:gg] +synonym: "postoral segment" RELATED [] +xref: FBbt:00000011 +is_a: UBERON:6000006 ! head segment + +[Term] +id: UBERON:6000014 +name: insect labial segment +def: "Most posterior of the gnathal segments. In the adult it bears a pair of fused appendages, the labia, and its ectodermal invaginations give rise to the salivary glands." [FlyBase:FBrf0007734] +xref: FBbt:00000014 +is_a: UBERON:6000011 ! insect gnathal segment + +[Term] +id: UBERON:6000015 +name: insect thorax +def: "The main middle section of the insect body comprising three thoracic rings: the pro-, the meso- and the metathoraces which are more or less well fused and cask-like sometimes having on the upper lateral part one of two pairs of wings, while on the ventrolateral part each thoracic ring bears a pair of legs." [FlyBase:FBrf0166419] +xref: FBbt:00000015 +is_a: UBERON:6000002 ! panarthropod tagma + +[Term] +id: UBERON:6000016 +name: insect thoracic segment +def: "Any segment (UBERON:6000003) that is part of some thorax (UBERON:6000015)." [FBC:auto_generated_definition] +xref: FBbt:00000016 +is_a: UBERON:0000914 ! organismal segment +intersection_of: UBERON:0000914 ! organismal segment +intersection_of: part_of UBERON:6000015 ! insect thorax +relationship: part_of UBERON:6000015 ! insect thorax + +[Term] +id: UBERON:6000017 +name: insect prothoracic segment +def: "The first (most anterior) segment of the thorax." [FBC:DOS] +synonym: "prothorax" RELATED [] +synonym: "t1" RELATED [] +synonym: "thoracic segment 1" RELATED [] +xref: FBbt:00000017 +is_a: UBERON:6000016 ! insect thoracic segment + +[Term] +id: UBERON:6000018 +name: insect mesothoracic segment +def: "The second (middle) segment of the thorax." [FBC:DOS] +synonym: "mesothorax" RELATED [] +synonym: "t2" RELATED [] +synonym: "thoracic segment 2" RELATED [] +xref: FBbt:00000018 +is_a: UBERON:6000016 ! insect thoracic segment + +[Term] +id: UBERON:6000019 +name: insect metathoracic segment +def: "The third (most posterior) segment of the thorax." [FBC:DOS] +synonym: "metathorax" RELATED [] +synonym: "t3" RELATED [] +synonym: "thoracic segment 3" RELATED [] +xref: FBbt:00000019 +is_a: UBERON:6000016 ! insect thoracic segment + +[Term] +id: UBERON:6000020 +name: insect abdomen +def: "The most posterior of the three tagma (UBERON:6000002)." [FlyBase:FBrf0166419] +xref: FBbt:00000020 +is_a: UBERON:6000002 ! panarthropod tagma + +[Term] +id: UBERON:6000021 +name: insect abdominal segment +def: "Metameric subdivision of the abdomen." [FBC:SPR] +xref: FBbt:00000021 +is_a: UBERON:0000914 ! organismal segment +intersection_of: UBERON:0000914 ! organismal segment +intersection_of: part_of UBERON:6000020 ! insect abdomen +relationship: part_of UBERON:6000020 ! insect abdomen + +[Term] +id: UBERON:6000029 +name: insect abdominal segment 8 +synonym: "a8" RELATED [] +xref: FBbt:00000029 +is_a: UBERON:6000021 ! insect abdominal segment + +[Term] +id: UBERON:6000030 +name: insect abdominal segment 9 +synonym: "a9" RELATED [] +xref: FBbt:00000030 +is_a: UBERON:6000021 ! insect abdominal segment + +[Term] +id: UBERON:6000046 +name: insect dorsal appendage +def: "Paired appendage of the eggshell, located on the anterior-dorsal side of the egg, just posterior to the operculum. Functions as a respiratory structures." [FBC:DOS] +synonym: "chorionic appendage" EXACT [FlyBase:FBrf0047871] +xref: FBbt:00000046 +is_a: UBERON:6007248 ! insect chorionic specialization + +[Term] +id: UBERON:6000094 +name: clypeo-labral anlage in statu nascendi +def: "." [FBC:VH] +synonym: "Asn Cly" RELATED [FBC:DOS] +xref: FBbt:00000094 +is_a: UBERON:6005413 ! insect anlage in statu nascendi + +[Term] +id: UBERON:6000096 +name: insect ventral furrow +xref: FBbt:00000096 +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:6007424 ! insect epithelial furrow + +[Term] +id: UBERON:6000097 +name: insect cephalic furrow +xref: FBbt:00000097 +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:6007424 ! insect epithelial furrow +relationship: part_of UBERON:0004734 ! gastrula + +[Term] +id: UBERON:6000104 +name: insect mesoderm anlage +synonym: "ventral plate" RELATED [] +xref: FBbt:00000104 +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0007688 ! anlage + +[Term] +id: UBERON:6000112 +name: insect dorsal ectoderm +synonym: "AdorEc" RELATED [] +synonym: "dorEc" RELATED [] +xref: FBbt:00000112 +is_a: UBERON:0010000 ! multicellular anatomical structure +relationship: develops_from UBERON:6005428 ! insect dorsal ectoderm anlage +relationship: part_of UBERON:6007045 ! insect trunk ectoderm + +[Term] +id: UBERON:6000119 +name: insect anterior ectoderm +def: "The region of the ectoderm anterior to the cephalic furrow." [FBC:DOS] +xref: FBbt:00000119 +is_a: UBERON:0010000 ! multicellular anatomical structure +relationship: part_of UBERON:0000924 ! ectoderm + +[Term] +id: UBERON:6000128 +name: insect trunk mesoderm +def: "The mesoderm of segments T1-A9. It first becomes morphologically distinct during ventral furrow formation. Following invagination during stages 6 and 7, it remains a coherent structure with no morphologically apparent subdivisions, apart from transient metamery during stage 9, until stage 11. It undergoes a number of morphological changes during this period: as its cells divide following invagination, it loses its epithelial integrity and by stage 9 has rearranged into a monolayer of cuboidal cells. A further division happens during stage 10 leading to two distinct layers by stage 11." [FlyBase:FBrf0089570] +synonym: "AtrunkMes" RELATED [] +synonym: "P2 TrMes" RELATED [FBC:DOS] +synonym: "TrMes" RELATED [] +xref: FBbt:00000128 +is_a: UBERON:0000926 ! mesoderm +relationship: develops_from UBERON:6005436 ! insect trunk mesoderm anlage + +[Term] +id: UBERON:6000130 +name: insect visceral mesoderm +xref: FBbt:00000130 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:6000128 ! insect trunk mesoderm + +[Term] +id: UBERON:6000131 +name: insect mesodermal crest +xref: FBbt:00000131 +is_a: UBERON:6026002 ! insect visceral mesoderm derivative +relationship: part_of UBERON:6000130 ! insect visceral mesoderm + +[Term] +id: UBERON:6000132 +name: insect mesodermal crest of segment T3 +xref: FBbt:00000132 +is_a: UBERON:6026002 ! insect visceral mesoderm derivative +relationship: part_of UBERON:6000131 ! insect mesodermal crest + +[Term] +id: UBERON:6000137 +name: embryonic tagma +def: "Any tagma (UBERON:6000002) that is part of some embryo (UBERON:6000052)." [FBC:auto_generated_definition] +xref: FBbt:00000137 +is_a: UBERON:6000002 ! panarthropod tagma +intersection_of: UBERON:6000002 ! panarthropod tagma +intersection_of: part_of UBERON:0000922 ! embryo +relationship: part_of UBERON:0000922 ! embryo + +[Term] +id: UBERON:6000154 +name: embryonic segment +def: "Any segment that is part of some embryo." [UBERON:cjm] +xref: FBbt:00000154 +is_a: UBERON:0000914 ! organismal segment +intersection_of: UBERON:0000914 ! organismal segment +intersection_of: part_of UBERON:0000922 ! embryo +relationship: part_of UBERON:0000922 ! embryo + +[Term] +id: UBERON:6000157 +name: embryonic head segment +def: "Any segment that is part of some embryonic head." [FBC:auto_generated_definition] +xref: FBbt:00000157 +is_a: UBERON:6000006 ! head segment +is_a: UBERON:6000154 ! embryonic segment +intersection_of: UBERON:0000914 ! organismal segment +intersection_of: part_of UBERON:0008816 ! embryonic head +relationship: part_of UBERON:0008816 ! embryonic head + +[Term] +id: UBERON:6000158 +name: insect embryonic procephalic segment +def: "Any procephalic segment (UBERON:6000007) that is part of some embryonic head (UBERON:6000155)." [FBC:auto_generated_definition] +xref: FBbt:00000158 +is_a: UBERON:6000007 ! procephalic segment +is_a: UBERON:6000157 ! embryonic head segment +intersection_of: UBERON:6000007 ! procephalic segment +intersection_of: part_of UBERON:0008816 ! embryonic head + +[Term] +id: UBERON:6000160 +name: insect embryonic antennal segment +def: "Any antennal segment (UBERON:6000009) that is part of some embryonic head (UBERON:6000155)." [FBC:auto_generated_definition] +xref: FBbt:00000160 +is_a: UBERON:6000009 ! antennal segment +is_a: UBERON:6000158 ! insect embryonic procephalic segment +intersection_of: UBERON:6000009 ! antennal segment +intersection_of: part_of UBERON:0008816 ! embryonic head + +[Term] +id: UBERON:6000162 +name: insect embryonic gnathal segment +def: "Any gnathal segment (UBERON:6000011) that is part of some embryonic head (UBERON:6000155)." [FBC:auto_generated_definition] +xref: FBbt:00000162 +is_a: UBERON:6000011 ! insect gnathal segment +is_a: UBERON:6000157 ! embryonic head segment +intersection_of: UBERON:6000011 ! insect gnathal segment +intersection_of: part_of UBERON:0008816 ! embryonic head + +[Term] +id: UBERON:6000165 +name: insect embryonic labial segment +def: "Any labial segment (UBERON:6000014) that is part of some embryonic head (UBERON:6000155)." [FBC:auto_generated_definition] +xref: FBbt:00000165 +is_a: UBERON:6000014 ! insect labial segment +is_a: UBERON:6000162 ! insect embryonic gnathal segment +intersection_of: UBERON:6000014 ! insect labial segment +intersection_of: part_of UBERON:0008816 ! embryonic head + +[Term] +id: UBERON:6000166 +name: insect embryonic thorax +def: "Any thorax (UBERON:6000015) that is part of some embryo (UBERON:6000052)." [FBC:auto_generated_definition] +xref: FBbt:00000166 +is_a: UBERON:6000015 ! insect thorax +is_a: UBERON:6000137 ! embryonic tagma +intersection_of: UBERON:6000015 ! insect thorax +intersection_of: part_of UBERON:0000922 ! embryo + +[Term] +id: UBERON:6000167 +name: insect embryonic thoracic segment +def: "Any segment (UBERON:6000003) that is part of some embryonic thorax (UBERON:6000166)." [FBC:auto_generated_definition] +xref: FBbt:00000167 +is_a: UBERON:6000016 ! insect thoracic segment +is_a: UBERON:6000154 ! embryonic segment +intersection_of: UBERON:0000914 ! organismal segment +intersection_of: part_of UBERON:6000166 ! insect embryonic thorax +relationship: part_of UBERON:6000166 ! insect embryonic thorax + +[Term] +id: UBERON:6000168 +name: insect embryonic prothoracic segment +def: "Prothoracic segment of the embryo." [FBC:DOS] +synonym: "prothorax" RELATED [] +synonym: "t1" RELATED [] +synonym: "thoracic segment 1" RELATED [] +xref: FBbt:00000168 +is_a: UBERON:6000017 ! insect prothoracic segment +is_a: UBERON:6000167 ! insect embryonic thoracic segment +intersection_of: UBERON:6000017 ! insect prothoracic segment +intersection_of: part_of UBERON:6000166 ! insect embryonic thorax + +[Term] +id: UBERON:6000169 +name: insect embryonic mesothoracic segment +def: "Mesothoracic segment of the embryo." [FBC:DOS] +synonym: "mesothorax" RELATED [] +synonym: "t2" RELATED [] +synonym: "thoracic segment 2" RELATED [] +xref: FBbt:00000169 +is_a: UBERON:6000018 ! insect mesothoracic segment +is_a: UBERON:6000167 ! insect embryonic thoracic segment +intersection_of: UBERON:6000018 ! insect mesothoracic segment +intersection_of: part_of UBERON:6000166 ! insect embryonic thorax + +[Term] +id: UBERON:6000170 +name: insect embryonic metathoracic segment +def: "Metathoracic segment of the embryo." [FBC:DOS] +synonym: "metathorax" RELATED [] +synonym: "t3" RELATED [] +synonym: "thoracic segment 3" RELATED [] +xref: FBbt:00000170 +is_a: UBERON:6000019 ! insect metathoracic segment +is_a: UBERON:6000167 ! insect embryonic thoracic segment +intersection_of: UBERON:6000019 ! insect metathoracic segment +intersection_of: part_of UBERON:6000166 ! insect embryonic thorax + +[Term] +id: UBERON:6000171 +name: insect embryonic abdomen +def: "Abdomen of the embryo." [FBC:DOS] +xref: FBbt:00000171 +is_a: UBERON:6000020 ! insect abdomen +is_a: UBERON:6000137 ! embryonic tagma +intersection_of: UBERON:6000020 ! insect abdomen +intersection_of: part_of UBERON:0000922 ! embryo + +[Term] +id: UBERON:6000172 +name: insect embryonic abdominal segment +def: "Metameric subdivision of the embryonic abdomen." [FBC:SPR] +xref: FBbt:00000172 +is_a: UBERON:6000021 ! insect abdominal segment +is_a: UBERON:6000154 ! embryonic segment +intersection_of: UBERON:0000914 ! organismal segment +intersection_of: part_of UBERON:6000171 ! insect embryonic abdomen +relationship: part_of UBERON:6000171 ! insect embryonic abdomen + +[Term] +id: UBERON:6000180 +name: insect embryonic abdominal segment 8 +def: "Any abdominal segment 8 (UBERON:6000029) that is part of some embryonic abdomen (UBERON:6000171)." [FBC:auto_generated_definition] +synonym: "a8" RELATED [] +xref: FBbt:00000180 +is_a: UBERON:6000029 ! insect abdominal segment 8 +is_a: UBERON:6000172 ! insect embryonic abdominal segment +intersection_of: UBERON:6000029 ! insect abdominal segment 8 +intersection_of: part_of UBERON:6000171 ! insect embryonic abdomen + +[Term] +id: UBERON:6000181 +name: insect embryonic abdominal segment 9 +def: "Any abdominal segment 9 (UBERON:6000030) that is part of some embryonic abdomen (UBERON:6000171)." [FBC:auto_generated_definition] +synonym: "a9" RELATED [] +xref: FBbt:00000181 +is_a: UBERON:6000030 ! insect abdominal segment 9 +is_a: UBERON:6000172 ! insect embryonic abdominal segment +intersection_of: UBERON:6000030 ! insect abdominal segment 9 +intersection_of: part_of UBERON:6000171 ! insect embryonic abdomen + +[Term] +id: UBERON:6000186 +name: insect embryonic optic lobe primordium +def: "." [FBC:DOS, FBC:VH] +synonym: "optic lobe placode" RELATED [] +synonym: "optic lobe primordium" RELATED [] +xref: FBbt:00000186 +is_a: UBERON:0001048 ! primordium + +[Term] +id: UBERON:6001055 +name: insect presumptive embryonic/larval nervous system +def: "The sum of all the structures in the embryo that will develop into the embryonic/larval nervous system." [FlyBase:FBrf0031012] +synonym: "embryonic nervous system" RELATED [FBC:DOS] +xref: FBbt:00001055 +is_a: UBERON:6007116 ! insect presumptive embryonic/larval system + +[Term] +id: UBERON:6001056 +name: insect presumptive embryonic/larval central nervous system +def: "The sum of all the structures in the embryo that will develop into the embryonic/larval central nervous system." [FlyBase:FBrf0031012] +synonym: "embryonic central nervous system" RELATED [FBC:DOS] +xref: FBbt:00001056 +is_a: UBERON:6007116 ! insect presumptive embryonic/larval system +relationship: part_of UBERON:6001055 ! insect presumptive embryonic/larval nervous system + +[Term] +id: UBERON:6001057 +name: insect neurogenic region +xref: FBbt:00001057 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0000924 ! ectoderm + +[Term] +id: UBERON:6001059 +name: insect visual primordium +synonym: "optic lobe placode" RELATED [] +synonym: "optic lobe primordium" RELATED [] +synonym: "P2 VisSys" RELATED [FBC:DOS] +xref: FBbt:00001059 +is_a: UBERON:0001048 ! primordium +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:6025991 ! insect anterior ectoderm derivative +relationship: develops_from UBERON:6005434 ! insect visual anlage + +[Term] +id: UBERON:6001060 +name: insect embryonic brain +def: "Brain of the embryo." [FBC:SPR] +xref: FBbt:00001060 +is_a: UBERON:0000955 ! brain +relationship: part_of UBERON:6001056 ! insect presumptive embryonic/larval central nervous system + +[Term] +id: UBERON:6001135 +name: insect proneural cluster +def: "An equivalence group of the neurectoderm where all cells can, although only one will, become a neural progenitor cell." [FlyBase:FBrf0074477, FlyBase:FBrf0089570] +xref: FBbt:00001135 +is_a: UBERON:0007688 ! anlage + +[Term] +id: UBERON:6001648 +name: insect embryonic imaginal precursor +def: "Embryonic structure that will proliferate during larval development into a larval imaginal disc. During early embryogenesis the precursor is part of the epithelial sheet before segregating from the epithelial sheet by late embryogenesis (Bate and Martinez Arias, 1991)." [FlyBase:FBrf0053815, FlyBase:FBrf0064789] +xref: FBbt:00001648 +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:6005023 ! insect imaginal precursor + +[Term] +id: UBERON:6001649 +name: insect imaginal disc primordium +def: "Population of contiguous, morphologically distinct cells that will form an imaginal disc." [FBC:SPR] +synonym: "imaginal disc specific anlage" RELATED [] +xref: FBbt:00001649 +is_a: UBERON:0001048 ! primordium +is_a: UBERON:6001648 ! insect embryonic imaginal precursor +relationship: develops_from UBERON:6005533 ! insect ventral epidermis primordium + +[Term] +id: UBERON:6001650 +name: insect labial disc primordium +def: "Primordium that will form the labial disc." [FBC:SPR] +synonym: "labial disc specific anlage" RELATED [] +xref: FBbt:00001650 +is_a: UBERON:6001649 ! insect imaginal disc primordium +relationship: part_of UBERON:6000165 ! insect embryonic labial segment + +[Term] +id: UBERON:6001652 +name: insect eye-antennal disc primordium +def: "Primordium from which the eye-antennal disc develops." [FBC:SPR] +synonym: "eye-antennal disc specific anlage" RELATED [] +xref: FBbt:00001652 +is_a: UBERON:6001649 ! insect imaginal disc primordium +relationship: part_of UBERON:6000160 ! insect embryonic antennal segment + +[Term] +id: UBERON:6001653 +name: insect dorsal thoracic disc primordium +synonym: "dorsal thoracic disc specific anlage" RELATED [] +xref: FBbt:00001653 +is_a: UBERON:6001649 ! insect imaginal disc primordium +relationship: part_of UBERON:6000167 ! insect embryonic thoracic segment + +[Term] +id: UBERON:6001655 +name: insect dorsal mesothoracic disc primordium +synonym: "dorsal mesothoracic disc specific anlage" RELATED [] +xref: FBbt:00001655 +is_a: UBERON:6001653 ! insect dorsal thoracic disc primordium +relationship: part_of UBERON:6000169 ! insect embryonic mesothoracic segment + +[Term] +id: UBERON:6001656 +name: insect dorsal metathoracic disc primordium +synonym: "dorsal metathoracic disc specific anlage" RELATED [] +xref: FBbt:00001656 +is_a: UBERON:6001653 ! insect dorsal thoracic disc primordium +relationship: part_of UBERON:6000170 ! insect embryonic metathoracic segment + +[Term] +id: UBERON:6001657 +name: insect ventral thoracic disc primordium +synonym: "ventral thoracic disc specific anlage" RELATED [] +xref: FBbt:00001657 +is_a: UBERON:6001649 ! insect imaginal disc primordium +relationship: part_of UBERON:6000167 ! insect embryonic thoracic segment + +[Term] +id: UBERON:6001658 +name: insect ventral prothoracic disc primordium +synonym: "ventral prothoracic disc specific anlage" RELATED [] +xref: FBbt:00001658 +is_a: UBERON:6001657 ! insect ventral thoracic disc primordium +relationship: part_of UBERON:6000168 ! insect embryonic prothoracic segment + +[Term] +id: UBERON:6001661 +name: insect genital disc primordium +def: "Primordium from which the genital disc develops." [FBC:SPR] +synonym: "genital disc specific anlage" RELATED [] +xref: FBbt:00001661 +is_a: UBERON:6001649 ! insect imaginal disc primordium + +[Term] +id: UBERON:6001662 +name: insect male genital disc primordium +def: "Primordium from which the male genital disc derives." [FBC:SPR] +synonym: "male genital disc specific anlage" RELATED [] +xref: FBbt:00001662 +is_a: UBERON:6001661 ! insect genital disc primordium +relationship: part_of UBERON:6000181 ! insect embryonic abdominal segment 9 + +[Term] +id: UBERON:6001663 +name: insect female genital disc primordium +def: "Primordium from which the female genital disc derives." [FBC:SPR] +synonym: "female genital disc specific anlage" RELATED [] +xref: FBbt:00001663 +is_a: UBERON:6001661 ! insect genital disc primordium +relationship: part_of UBERON:6000180 ! insect embryonic abdominal segment 8 + +[Term] +id: UBERON:6001664 +name: insect embryonic/larval circulatory system +def: "Tubular system of the embryo/larva through which hemolymph flows." [FlyBase:FBrf0031012] +synonym: "larval circulatory system" EXACT [] +xref: FBbt:00001664 +is_a: UBERON:0001009 ! circulatory system +relationship: part_of UBERON:0000323 ! late embryo +relationship: part_of UBERON:0002548 ! larva + +[Term] +id: UBERON:6001668 +name: insect embryonic/larval lymph gland +def: "Hematopoietic organ of the larva, located along the dorsal vessel, behind the brain. It produces the plasmatocytes, crystal cells and lamellocytes which are released at the end of the larval instar and onset of metamorphosis. It is composed of 3 pairs of bilateral lobes: an anterior primary lobe, a posterior secondary lobe and the most posterior lobe (or multiple lobes), the tertiary lobe. Each lobe is separated by pericardial cells. In the late embryo, the lymph gland consists of a single pair of lobes (primary lobes) containing around 20 cells each that flank the dorsal vessel. By the second larval instar, the lymph gland is composed of two or three new pairs of posterior lobes, and the primary lobes have increased in size to contain around 200 cells. During the first and early second larval instars, the lymph gland comprises only the hematopoietic progenitor population. The lymph gland increases in size ten-fold by the late third instar, and at this stage the progenitor cells (prohemocytes) become restricted to the medial region (medullary zone) of the primary lobe and become quiescent. The differentiated hemocytes are found in the periphery (cortical zone) of the primary lobe and these cells proliferate extensively. The posterior signalling center is a group of about 30 cells at the posterior tip of the primary lobe that secretes several signalling molecules and functions as a stem-cell niche. The secondary and tertiary lobes contain prohemocytes, and rarely a differentiated cell. Lymph glands are eliminated at metamorphosis." [FlyBase:FBrf0031001, FlyBase:FBrf0032406, FlyBase:FBrf0074444, FlyBase:FBrf0155787, FlyBase:FBrf0162082, FlyBase:FBrf0187467] +synonym: "embryonic/larval hematopoietic organ" EXACT [FlyBase:FBrf0074444] +synonym: "hematopoietic organ" EXACT [] +xref: FBbt:00001668 +is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: develops_from UBERON:6000132 ! insect mesodermal crest of segment T3 +relationship: develops_from UBERON:6005467 ! insect lymph gland primordium +relationship: part_of UBERON:6001664 ! insect embryonic/larval circulatory system + +[Term] +id: UBERON:6001722 +name: insect ring gland +def: "A closely associated cluster of three neuroendocrine glands located anterior to the aorta and dorsal to the esophagus. At embryonic stage 17 and in larva it is found anterior to the brain and is formed by the corpus cardiacum ventrally, the prothoracic gland laterally and the corpus allatum dorsally. The adult ring gland is located anterior to the proventriculus and is formed by the corpus cardiacum ventrally, the corpus allatum dorsally and the hypocerebral ganglion posterior to the corpus cardiacum. It is innervated by neurons of the nervus corporis cardiaci (NccI-III)." [FlyBase:FBrf0064803, FlyBase:FBrf0089570, FlyBase:FBrf0179777, http://www.ncbi.nlm.nih.gov/pubmed/12966498] +xref: FBbt:00001722 +is_a: UBERON:0000477 ! anatomical cluster + +[Term] +id: UBERON:6001728 +name: insect larval tagma +def: "Any tagma (UBERON:6000002) that is part of some larva (UBERON:6001727)." [FBC:auto_generated_definition] +xref: FBbt:00001728 +is_a: UBERON:6000002 ! panarthropod tagma +intersection_of: UBERON:6000002 ! panarthropod tagma +intersection_of: part_of UBERON:0002548 ! larva +relationship: part_of UBERON:0002548 ! larva + +[Term] +id: UBERON:6001729 +name: insect larval segment +def: "Any segment that is part of some larva." [FBC:auto_generated_definition] +xref: FBbt:00001729 +is_a: UBERON:0000914 ! organismal segment +intersection_of: UBERON:0000914 ! organismal segment +intersection_of: part_of UBERON:0002548 ! larva +relationship: develops_from UBERON:6000154 ! embryonic segment +relationship: part_of UBERON:0002548 ! larva + +[Term] +id: UBERON:6001730 +name: insect larval head +def: "Any head that is part of some larva." [FBC:auto_generated_definition] +xref: FBbt:00001730 +is_a: UBERON:0000033 ! head +intersection_of: UBERON:0000033 ! head +intersection_of: part_of UBERON:0002548 ! larva +relationship: part_of UBERON:0002548 ! larva + +[Term] +id: UBERON:6001731 +name: insect larval ocular segment +def: "Any ocular segment (UBERON:6000005) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] +synonym: "larval acron" RELATED [] +xref: FBbt:00001731 +is_a: UBERON:6000005 ! insect ocular segment +is_a: UBERON:6001733 ! insect larval procephalic segment +intersection_of: UBERON:6000005 ! insect ocular segment +intersection_of: part_of UBERON:6001730 ! insect larval head + +[Term] +id: UBERON:6001732 +name: insect larval head segment +def: "Any segment that is part of some larval head." [FBC:auto_generated_definition] +xref: FBbt:00001732 +is_a: UBERON:6000006 ! head segment +is_a: UBERON:6001729 ! insect larval segment +intersection_of: UBERON:0000914 ! organismal segment +intersection_of: part_of UBERON:6001730 ! insect larval head +relationship: part_of UBERON:6001730 ! insect larval head + +[Term] +id: UBERON:6001733 +name: insect larval procephalic segment +def: "Any procephalic segment (UBERON:6000007) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] +xref: FBbt:00001733 +is_a: UBERON:6000007 ! procephalic segment +is_a: UBERON:6001732 ! insect larval head segment +intersection_of: UBERON:6000007 ! procephalic segment +intersection_of: part_of UBERON:6001730 ! insect larval head + +[Term] +id: UBERON:6001734 +name: insect larval labral segment +def: "Any labral segment (UBERON:6000008) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] +xref: FBbt:00001734 +is_a: UBERON:6000008 ! labral segment +is_a: UBERON:6001733 ! insect larval procephalic segment +intersection_of: UBERON:6000008 ! labral segment +intersection_of: part_of UBERON:6001730 ! insect larval head + +[Term] +id: UBERON:6001735 +name: insect larval antennal segment +def: "Any antennal segment (UBERON:6000009) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] +xref: FBbt:00001735 +is_a: UBERON:6000009 ! antennal segment +is_a: UBERON:6001733 ! insect larval procephalic segment +intersection_of: UBERON:6000009 ! antennal segment +intersection_of: part_of UBERON:6001730 ! insect larval head + +[Term] +id: UBERON:6001737 +name: insect larval gnathal segment +def: "Any gnathal segment (UBERON:6000011) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] +xref: FBbt:00001737 +is_a: UBERON:6000011 ! insect gnathal segment +is_a: UBERON:6001732 ! insect larval head segment +intersection_of: UBERON:6000011 ! insect gnathal segment +intersection_of: part_of UBERON:6001730 ! insect larval head + +[Term] +id: UBERON:6001740 +name: insect larval labial segment +def: "Any labial segment (UBERON:6000014) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] +xref: FBbt:00001740 +is_a: UBERON:6000014 ! insect labial segment +is_a: UBERON:6001737 ! insect larval gnathal segment +intersection_of: UBERON:6000014 ! insect labial segment +intersection_of: part_of UBERON:6001730 ! insect larval head + +[Term] +id: UBERON:6001741 +name: insect larval thorax +def: "Any thorax (UBERON:6000015) that is part of some larva (UBERON:6001727)." [FBC:auto_generated_definition] +xref: FBbt:00001741 +is_a: UBERON:6000015 ! insect thorax +is_a: UBERON:6001728 ! insect larval tagma +intersection_of: UBERON:6000015 ! insect thorax +intersection_of: part_of UBERON:0002548 ! larva + +[Term] +id: UBERON:6001742 +name: insect larval thoracic segment +def: "Any segment (UBERON:6000003) that is part of some larval thorax (UBERON:6001741)." [FBC:auto_generated_definition] +xref: FBbt:00001742 +is_a: UBERON:6000016 ! insect thoracic segment +is_a: UBERON:6001729 ! insect larval segment +intersection_of: UBERON:0000914 ! organismal segment +intersection_of: part_of UBERON:6001741 ! insect larval thorax +relationship: part_of UBERON:6001741 ! insect larval thorax + +[Term] +id: UBERON:6001743 +name: insect larval prothoracic segment +def: "Any prothoracic segment (UBERON:6000017) that is part of some larval thorax (UBERON:6001741)." [FBC:auto_generated_definition] +synonym: "prothorax" RELATED [] +synonym: "t1" RELATED [] +synonym: "thoracic segment 1" RELATED [] +xref: FBbt:00001743 +is_a: UBERON:6000017 ! insect prothoracic segment +is_a: UBERON:6001742 ! insect larval thoracic segment +intersection_of: UBERON:6000017 ! insect prothoracic segment +intersection_of: part_of UBERON:6001741 ! insect larval thorax + +[Term] +id: UBERON:6001744 +name: insect larval mesothoracic segment +def: "Any mesothoracic segment (UBERON:6000018) that is part of some larval thorax (UBERON:6001741)." [FBC:auto_generated_definition] +synonym: "mesothorax" RELATED [] +synonym: "t2" RELATED [] +synonym: "thoracic segment 2" RELATED [] +xref: FBbt:00001744 +is_a: UBERON:6000018 ! insect mesothoracic segment +is_a: UBERON:6001742 ! insect larval thoracic segment +intersection_of: UBERON:6000018 ! insect mesothoracic segment +intersection_of: part_of UBERON:6001741 ! insect larval thorax + +[Term] +id: UBERON:6001745 +name: insect larval metathoracic segment +def: "Any metathoracic segment (UBERON:6000019) that is part of some larval thorax (UBERON:6001741)." [FBC:auto_generated_definition] +synonym: "metathorax" RELATED [] +synonym: "t3" RELATED [] +synonym: "thoracic segment 3" RELATED [] +xref: FBbt:00001745 +is_a: UBERON:6000019 ! insect metathoracic segment +is_a: UBERON:6001742 ! insect larval thoracic segment +intersection_of: UBERON:6000019 ! insect metathoracic segment +intersection_of: part_of UBERON:6001741 ! insect larval thorax + +[Term] +id: UBERON:6001746 +name: insect larval abdomen +def: "Any abdomen (UBERON:6000020) that is part of some larva (UBERON:6001727)." [FBC:auto_generated_definition] +xref: FBbt:00001746 +is_a: UBERON:6000020 ! insect abdomen +is_a: UBERON:6001728 ! insect larval tagma +intersection_of: UBERON:6000020 ! insect abdomen +intersection_of: part_of UBERON:0002548 ! larva + +[Term] +id: UBERON:6001747 +name: insect larval abdominal segment +def: "Any segment (UBERON:6000003) that is part of some larval abdomen (UBERON:6001746)." [FBC:auto_generated_definition] +xref: FBbt:00001747 +is_a: UBERON:6000021 ! insect abdominal segment +is_a: UBERON:6001729 ! insect larval segment +intersection_of: UBERON:0000914 ! organismal segment +intersection_of: part_of UBERON:6001746 ! insect larval abdomen +relationship: part_of UBERON:6001746 ! insect larval abdomen + +[Term] +id: UBERON:6001755 +name: insect larval abdominal segment 8 +def: "Any abdominal segment 8 (UBERON:6000029) that is part of some larval abdomen (UBERON:6001746)." [FBC:auto_generated_definition] +synonym: "a8" RELATED [] +xref: FBbt:00001755 +is_a: UBERON:6000029 ! insect abdominal segment 8 +is_a: UBERON:6001747 ! insect larval abdominal segment +intersection_of: UBERON:6000029 ! insect abdominal segment 8 +intersection_of: part_of UBERON:6001746 ! insect larval abdomen + +[Term] +id: UBERON:6001756 +name: insect larval abdominal segment 9 +def: "Any abdominal segment 9 (UBERON:6000030) that is part of some larval abdomen (UBERON:6001746)." [FBC:auto_generated_definition] +synonym: "a9" RELATED [] +xref: FBbt:00001756 +is_a: UBERON:6000030 ! insect abdominal segment 9 +is_a: UBERON:6001747 ! insect larval abdominal segment +intersection_of: UBERON:6000030 ! insect abdominal segment 9 +intersection_of: part_of UBERON:6001746 ! insect larval abdomen + +[Term] +id: UBERON:6001760 +name: insect embryonic/larval imaginal precursor +def: "Imaginal precursor that is part of the embryo/larva." [FBC:SPR] +synonym: "larval imaginal precursor" EXACT [] +xref: FBbt:00001760 +is_a: UBERON:6005023 ! insect imaginal precursor +relationship: part_of UBERON:0002548 ! larva +relationship: part_of UBERON:0003142 ! prepupa +relationship: part_of UBERON:0003143 ! pupa + +[Term] +id: UBERON:6001764 +name: insect labial disc +def: "Imaginal disc that, in the adult, gives rise to the proboscis, including the prementum, prestomal cavity, labellum, labellar cap and pseudotrachea (Cohen, 1993)." [FlyBase:FBrf0033866, FlyBase:FBrf0064789] +xref: FBbt:00001764 +is_a: UBERON:0000939 ! imaginal disc +is_a: UBERON:0010371 ! ecto-epithelium +relationship: develops_from UBERON:6001650 ! insect labial disc primordium +relationship: part_of UBERON:6001740 ! insect larval labial segment + +[Term] +id: UBERON:6001765 +name: insect clypeo-labral disc +def: "Imaginal disc that in the adults gives rise to the labrum, anterior and posterior cibarial plates, fish trap bristles, epipharyngeal sclerite and clypeus (Cohen, 1993)." [FlyBase:FBrf0064789] +synonym: "clypeolabral disc" EXACT [] +xref: FBbt:00001765 +is_a: UBERON:0000939 ! imaginal disc +is_a: UBERON:0010371 ! ecto-epithelium +relationship: develops_from UBERON:6005514 ! insect adult clypeo-labral primordium +relationship: part_of UBERON:6001734 ! insect larval labral segment + +[Term] +id: UBERON:6001766 +name: insect eye-antennal disc +def: "Imaginal disc that, in the adults, gives rise to the eye, antenna, head capsule (including all bristles and external membranes) and the maxillary palps (Cohen, 1993)." [FlyBase:FBrf0064789] +xref: FBbt:00001766 +is_a: UBERON:0000939 ! imaginal disc +is_a: UBERON:0010371 ! ecto-epithelium +relationship: develops_from UBERON:6001652 ! insect eye-antennal disc primordium + +[Term] +id: UBERON:6001767 +name: insect antennal disc +def: "Posterior portion of the eye-antennal disc. It gives rise to the adult antennal segments and the maxillary palp, as well as contributing to the head capsule." [FlyBase:FBrf0064789] +xref: FBbt:00001767 +is_a: UBERON:0000939 ! imaginal disc +is_a: UBERON:0010371 ! ecto-epithelium +relationship: part_of UBERON:6001735 ! insect larval antennal segment +relationship: part_of UBERON:6001766 ! insect eye-antennal disc + +[Term] +id: UBERON:6001776 +name: insect dorsal thoracic disc +def: "Imaginal disc that is a precursor of dorsal thoracic structures of the adult." [FlyBase:FBrf0064789, FlyBase:FBrf0064803] +synonym: "dorsal thoracic disk" EXACT [] +xref: FBbt:00001776 +is_a: UBERON:0000939 ! imaginal disc +is_a: UBERON:0010371 ! ecto-epithelium +relationship: develops_from UBERON:6001653 ! insect dorsal thoracic disc primordium +relationship: part_of UBERON:6001742 ! insect larval thoracic segment + +[Term] +id: UBERON:6001778 +name: insect wing disc +def: "Dorsal imaginal disc of the mesothorax. Precursor of dorsal mesothoracic structures of the adult including the postnotum, scutum, scutellum, wing, wing hinge and part of the notal pleura." [FlyBase:FBrf0064789] +synonym: "dorsal mesothoracic disc" EXACT [] +xref: FBbt:00001778 +is_a: UBERON:6001776 ! insect dorsal thoracic disc +relationship: develops_from UBERON:6001655 ! insect dorsal mesothoracic disc primordium +relationship: part_of UBERON:6001744 ! insect larval mesothoracic segment + +[Term] +id: UBERON:6001779 +name: insect haltere disc +def: "Dorsal imaginal disc of the metathorax. Precursor of structure of the adult dorsal metathorax including the haltere." [FlyBase:FBrf0064789] +synonym: "dorsal metathoracic disc" EXACT [] +xref: FBbt:00001779 +is_a: UBERON:6001776 ! insect dorsal thoracic disc +relationship: develops_from UBERON:6001656 ! insect dorsal metathoracic disc primordium +relationship: part_of UBERON:6001745 ! insect larval metathoracic segment + +[Term] +id: UBERON:6001780 +name: insect ventral thoracic disc +def: "Imaginal disc that is a precursor of ventral thoracic structures of the adult." [FlyBase:FBrf0064789, FlyBase:FBrf0064803] +synonym: "leg disc" RELATED [] +synonym: "ventral thoracic disk" EXACT [] +xref: FBbt:00001780 +is_a: UBERON:0000939 ! imaginal disc +is_a: UBERON:0010371 ! ecto-epithelium +relationship: develops_from UBERON:6001657 ! insect ventral thoracic disc primordium +relationship: part_of UBERON:6001742 ! insect larval thoracic segment + +[Term] +id: UBERON:6001781 +name: insect prothoracic leg disc +def: "Imaginal disc of the ventral prothoracic segment. Precursor of structures of the adult ventral prothorax including the prothoracic (1st) leg." [FlyBase:FBrf0064789] +synonym: "1st leg disc" EXACT [] +synonym: "T1 leg disc" EXACT [] +synonym: "ventral prothoracic disc" EXACT [] +xref: FBbt:00001781 +is_a: UBERON:6001780 ! insect ventral thoracic disc +relationship: develops_from UBERON:6001658 ! insect ventral prothoracic disc primordium +relationship: part_of UBERON:6001743 ! insect larval prothoracic segment + +[Term] +id: UBERON:6001784 +name: insect genital disc +def: "Imaginal disc that gives rise to the internal and external genitalia, analia and adult hind gut (Cohen, 1993)." [FlyBase:FBrf0064789] +xref: FBbt:00001784 +is_a: UBERON:0000939 ! imaginal disc +is_a: UBERON:0010371 ! ecto-epithelium +relationship: develops_from UBERON:6001661 ! insect genital disc primordium + +[Term] +id: UBERON:6001785 +name: insect male genital disc +def: "Genital disc that gives rise to the penis and external genitalia, sperm pump, ejaculatory duct, paragonia and vas deferens, anal plates and adult hindgut (Cohen, 1993)." [FlyBase:FBrf0064789] +xref: FBbt:00001785 +is_a: UBERON:6001784 ! insect genital disc +relationship: develops_from UBERON:6001662 ! insect male genital disc primordium +relationship: part_of UBERON:6001747 ! insect larval abdominal segment + +[Term] +id: UBERON:6001787 +name: insect female genital disc +def: "Genital disc that gives rise to the vagina and vaginal plates, uterus, parovaria, spermatheca, seminal recepticle, oviducts, female analia and hindgut. (Cohen, 1993)." [FlyBase:FBrf0064789] +xref: FBbt:00001787 +is_a: UBERON:6001784 ! insect genital disc +relationship: develops_from UBERON:6001663 ! insect female genital disc primordium +relationship: part_of UBERON:6001747 ! insect larval abdominal segment + +[Term] +id: UBERON:6001789 +name: insect histoblast +def: "A progenitor of the adult external abdomen." [FBC:DOS, FBC:gg] +xref: FBbt:00001789 +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:6001760 ! insect embryonic/larval imaginal precursor +relationship: develops_from UBERON:6016022 ! insect abdominal histoblast primordium +relationship: part_of UBERON:0000323 ! late embryo + +[Term] +id: UBERON:6001790 +name: insect histoblast nest +def: "One of several groups of cells in the larval abdomen that gives rise to the adult external abdomen." [FBC:gg] +xref: FBbt:00001790 +is_a: UBERON:6001789 ! insect histoblast +relationship: part_of UBERON:6001747 ! insect larval abdominal segment + +[Term] +id: UBERON:6001791 +name: insect dorsal histoblast nest abdominal +xref: FBbt:00001791 +is_a: UBERON:6001790 ! insect histoblast nest +is_a: UBERON:6005831 ! insect dorsal imaginal precursor + +[Term] +id: UBERON:6001792 +name: insect anterior dorsal histoblast nest abdominal +xref: FBbt:00001792 +is_a: UBERON:6001791 ! insect dorsal histoblast nest abdominal + +[Term] +id: UBERON:6001809 +name: insect posterior dorsal histoblast nest abdominal +xref: FBbt:00001809 +is_a: UBERON:6001790 ! insect histoblast nest + +[Term] +id: UBERON:6001842 +name: insect embryonic/larval digestive system +def: "." [FlyBase:FBrf0007733, FlyBase:FBrf0064792] +synonym: "larval digestive system" EXACT [] +xref: FBbt:00001842 +is_a: UBERON:0001007 ! digestive system +relationship: part_of UBERON:0002548 ! larva + +[Term] +id: UBERON:6001845 +name: insect cephalopharyngeal skeleton +def: "A group of connected sclerites of the anterior embryonic/larval digestive system (atrium, pharynx and dorsal pouch). The cibarial dilator muscles connect to the cephalopharyngeal skeleton to lift the roof of the pharynx and thereby widen its lumen (Jurgens, 1986)." [FlyBase:FBrf0007734, FlyBase:FBrf0045366] +synonym: "cephalo-pharyngeal skeleton" EXACT [FlyBase:FBrf0045366] +synonym: "larval head skeleton" EXACT [FlyBase:FBrf0205317] +synonym: "mouth parts" EXACT [] +xref: FBbt:00001845 +is_a: UBERON:6007245 ! insect cuticular specialization +relationship: part_of UBERON:0008816 ! embryonic head +relationship: part_of UBERON:6001730 ! insect larval head +relationship: part_of UBERON:6001842 ! insect embryonic/larval digestive system + +[Term] +id: UBERON:6001848 +name: insect epipharyngeal sclerite +def: "Unpaired sclerite to which the median tooth (labrum) posteriorly merges, and bears the cuticular pores of the labral sense organ." [FlyBase:FBrf0045366] +synonym: "epistomal sclerite" EXACT [FlyBase:FBrf0045366] +xref: FBbt:00001848 +is_a: UBERON:6007245 ! insect cuticular specialization +relationship: part_of UBERON:6001845 ! insect cephalopharyngeal skeleton + +[Term] +id: UBERON:6001911 +name: insect embryonic/larval nervous system +def: "Nervous system of the embryo/larva." [FlyBase:FBrf0045359, FlyBase:FBrf0075072, FlyBase:FBrf0105282] +synonym: "larval nervous system" EXACT [] +xref: FBbt:00001911 +is_a: UBERON:0001016 ! nervous system +relationship: part_of UBERON:0000323 ! late embryo +relationship: part_of UBERON:0002548 ! larva + +[Term] +id: UBERON:6001919 +name: insect embryonic/larval central nervous system +def: "Central nervous system of the embryo/larva." [FBC:SPR] +synonym: "larval central nervous system" EXACT [] +xref: FBbt:00001919 +is_a: UBERON:0001017 ! central nervous system +relationship: part_of UBERON:6001911 ! insect embryonic/larval nervous system + +[Term] +id: UBERON:6001920 +name: insect embryonic/larval brain +def: "Brain of the embryo/larva." [FBC:SPR] +synonym: "larval brain" NARROW [] +synonym: "larval supraesophageal ganglion" NARROW [] +xref: FBbt:00001920 +is_a: UBERON:0000955 ! brain +is_a: UBERON:0003339 ! ganglion of central nervous system +relationship: develops_from UBERON:6001060 ! insect embryonic brain +relationship: part_of UBERON:6001730 ! insect larval head +relationship: part_of UBERON:6001919 ! insect embryonic/larval central nervous system + +[Term] +id: UBERON:6001925 +name: insect embryonic/larval protocerebrum +def: "Protocerebrum of the embryo/larva." [FBC:SPR] +synonym: "larval protocerebrum" RELATED [] +xref: FBbt:00001925 +is_a: UBERON:6003627 ! insect protocerebrum +relationship: part_of UBERON:6001734 ! insect larval labral segment +relationship: part_of UBERON:6001920 ! insect embryonic/larval brain + +[Term] +id: UBERON:6002639 +name: insect larval sense organ +def: "Any sense organ that is part of some larva." [FBC:auto_generated_definition] +synonym: "larval sense organ" EXACT [] +xref: FBbt:00002639 +is_a: UBERON:0000020 ! sense organ +intersection_of: UBERON:0000020 ! sense organ +intersection_of: part_of UBERON:0002548 ! larva +relationship: part_of UBERON:0002548 ! larva + +[Term] +id: UBERON:6002642 +name: insect embryonic/larval ocular segment sensillum +def: "Any embryonic/larval sense organ (UBERON:6002639) that is part of some larval ocular segment (UBERON:6001731)." [FBC:auto_generated_definition] +synonym: "larval ocular segment sensillum" EXACT [] +xref: FBbt:00002642 +is_a: UBERON:6007280 ! insect embryonic/larval head sense organ +intersection_of: UBERON:6002639 ! insect larval sense organ +intersection_of: part_of UBERON:6001731 ! insect larval ocular segment +relationship: part_of UBERON:6001731 ! insect larval ocular segment + +[Term] +id: UBERON:6003005 +name: insect adult tagma +def: "Any tagma (UBERON:6000002) that is part of some adult (UBERON:6003004)." [FBC:auto_generated_definition] +xref: FBbt:00003005 +is_a: UBERON:6000002 ! panarthropod tagma +intersection_of: UBERON:6000002 ! panarthropod tagma +intersection_of: part_of UBERON:0007023 ! adult organism +relationship: part_of UBERON:0007023 ! adult organism + +[Term] +id: UBERON:6003006 +name: adult segment +def: "Segment of the adult." [FBC:SPR] +xref: FBbt:00003006 +is_a: UBERON:0000914 ! organismal segment +intersection_of: UBERON:0000914 ! organismal segment +intersection_of: part_of UBERON:0007023 ! adult organism +relationship: part_of UBERON:0007023 ! adult organism + +[Term] +id: UBERON:6003007 +name: insect adult head +def: "Head of the adult organism." [FBC:SPR] +xref: FBbt:00003007 +is_a: UBERON:6000004 ! panarthropod head +is_a: UBERON:6003005 ! insect adult tagma + +[Term] +id: UBERON:6003009 +name: insect adult head segment +def: "Segment of the adult head." [FlyBase:FBrf0064788] +xref: FBbt:00003009 +is_a: UBERON:6000006 ! head segment +is_a: UBERON:6003006 ! adult segment +intersection_of: UBERON:0000914 ! organismal segment +intersection_of: part_of UBERON:6003007 ! insect adult head +relationship: part_of UBERON:6003007 ! insect adult head + +[Term] +id: UBERON:6003010 +name: insect adult procephalic segment +def: "Any procephalic segment (UBERON:6000007) that is part of some adult head (UBERON:6003007)." [FBC:auto_generated_definition] +xref: FBbt:00003010 +is_a: UBERON:6000007 ! procephalic segment +is_a: UBERON:6003009 ! insect adult head segment +intersection_of: UBERON:6000007 ! procephalic segment +intersection_of: part_of UBERON:6003007 ! insect adult head + +[Term] +id: UBERON:6003011 +name: insect adult labral segment +def: "Any labral segment (UBERON:6000008) that is part of some adult head (UBERON:6003007)." [FBC:auto_generated_definition] +xref: FBbt:00003011 +is_a: UBERON:6000008 ! labral segment +is_a: UBERON:6003010 ! insect adult procephalic segment +intersection_of: UBERON:6000008 ! labral segment +intersection_of: part_of UBERON:6003007 ! insect adult head + +[Term] +id: UBERON:6003012 +name: insect adult antennal segment +def: "Any antennal segment (UBERON:6000009) that is part of some adult head (UBERON:6003007)." [FBC:auto_generated_definition] +synonym: "adult antennal structure" EXACT [] +xref: FBbt:00003012 +is_a: UBERON:6000009 ! antennal segment +is_a: UBERON:6003010 ! insect adult procephalic segment +intersection_of: UBERON:6000009 ! antennal segment +intersection_of: part_of UBERON:6003007 ! insect adult head + +[Term] +id: UBERON:6003018 +name: insect adult thorax +def: "Thorax of the adult." [FlyBase:FBim0000792] +xref: FBbt:00003018 +is_a: UBERON:6000015 ! insect thorax +is_a: UBERON:6003005 ! insect adult tagma +intersection_of: UBERON:6000015 ! insect thorax +intersection_of: part_of UBERON:0007023 ! adult organism + +[Term] +id: UBERON:6003019 +name: insect adult thoracic segment +def: "Any segment (UBERON:6000003) that is part of some adult thorax (UBERON:6003018)." [FBC:auto_generated_definition] +xref: FBbt:00003019 +is_a: UBERON:6000016 ! insect thoracic segment +is_a: UBERON:6003006 ! adult segment +intersection_of: UBERON:0000914 ! organismal segment +intersection_of: part_of UBERON:6003018 ! insect adult thorax +relationship: part_of UBERON:6003018 ! insect adult thorax + +[Term] +id: UBERON:6003020 +name: insect adult prothoracic segment +def: "Any prothoracic segment (UBERON:6000017) that is part of some adult thorax (UBERON:6003018)." [FBC:auto_generated_definition] +synonym: "prothorax" EXACT [] +synonym: "t1" EXACT [] +synonym: "thoracic segment 1" EXACT [] +xref: FBbt:00003020 +is_a: UBERON:6000017 ! insect prothoracic segment +is_a: UBERON:6003019 ! insect adult thoracic segment +intersection_of: UBERON:6000017 ! insect prothoracic segment +intersection_of: part_of UBERON:6003018 ! insect adult thorax + +[Term] +id: UBERON:6003021 +name: insect adult mesothoracic segment +def: "Any mesothoracic segment (UBERON:6000018) that is part of some adult thorax (UBERON:6003018)." [FBC:auto_generated_definition] +synonym: "mesothorax" EXACT [] +synonym: "t2" EXACT [] +synonym: "thoracic segment 2" EXACT [] +xref: FBbt:00003021 +is_a: UBERON:6000018 ! insect mesothoracic segment +is_a: UBERON:6003019 ! insect adult thoracic segment +intersection_of: UBERON:6000018 ! insect mesothoracic segment +intersection_of: part_of UBERON:6003018 ! insect adult thorax + +[Term] +id: UBERON:6003023 +name: insect adult abdomen +def: "Abdomen of the adult." [FlyBase:FBim0000809, FlyBase:FBim0000810] +xref: FBbt:00003023 +is_a: UBERON:6000020 ! insect abdomen +is_a: UBERON:6003005 ! insect adult tagma +intersection_of: UBERON:6000020 ! insect abdomen +intersection_of: part_of UBERON:0007023 ! adult organism + +[Term] +id: UBERON:6003024 +name: insect adult abdominal segment +def: "Any abdominal segment (UBERON:6000021) that is part of some adult abdomen (UBERON:6003023)." [FBC:auto_generated_definition] +xref: FBbt:00003024 +is_a: UBERON:6000021 ! insect abdominal segment +is_a: UBERON:6003006 ! adult segment +intersection_of: UBERON:6000021 ! insect abdominal segment +intersection_of: part_of UBERON:6003023 ! insect adult abdomen +relationship: part_of UBERON:6003023 ! insect adult abdomen + +[Term] +id: UBERON:6003218 +name: insect adult muscle system +def: "Muscle system of the adult." [FlyBase:FBrf0007735] +xref: FBbt:00003218 +is_a: UBERON:0000383 ! musculature of body +relationship: part_of UBERON:0007023 ! adult organism + +[Term] +id: UBERON:6003259 +name: insect adult somatic muscle +def: "Muscle attached to the inner surface of the adult body wall, extending between articulated or flexibly joined areas, that serves to move the parts of the exoskeleton." [FlyBase:FBrf0007735] +xref: FBbt:00003259 +is_a: UBERON:0005090 ! muscle structure +intersection_of: UBERON:0005090 ! muscle structure +intersection_of: part_of UBERON:6003218 ! insect adult muscle system +relationship: part_of UBERON:6003218 ! insect adult muscle system + +[Term] +id: UBERON:6003559 +name: insect adult nervous system +def: "." [FlyBase:FBrf0002482, FlyBase:FBrf0007196, FlyBase:FBrf0007735, FlyBase:FBrf0034076] +xref: FBbt:00003559 +is_a: UBERON:0001016 ! nervous system +relationship: part_of UBERON:0007023 ! adult organism + +[Term] +id: UBERON:6003623 +name: insect adult central nervous system +def: "Central nervous system of the adult." [FBC:SPR] +xref: FBbt:00003623 +is_a: UBERON:0001017 ! central nervous system +relationship: part_of UBERON:6003559 ! insect adult nervous system + +[Term] +id: UBERON:6003624 +name: insect adult brain +def: "Brain of the adult." [FBC:SPR] +xref: FBbt:00003624 +is_a: UBERON:0000955 ! brain +relationship: part_of UBERON:6003007 ! insect adult head +relationship: part_of UBERON:6003623 ! insect adult central nervous system + +[Term] +id: UBERON:6003626 +name: insect supraesophageal ganglion +def: "The pre-oral neuropils of the brain located above and some of it below the esophagus, comprising three fused ganglia (protocerebrum, deutocerebrum, and tritocerebrum) in the head." [FlyBase:FBrf0224194, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] +synonym: "SPG" RELATED [] +xref: FBbt:00003626 +is_a: UBERON:0003339 ! ganglion of central nervous system +relationship: develops_from UBERON:6001920 ! insect embryonic/larval brain +relationship: part_of UBERON:0000955 ! brain + +[Term] +id: UBERON:6003627 +name: insect protocerebrum +def: "The most anterior of the segmental subdivisions of the insect CNS; thought to represent the first pre-oral segment of the brain. The protocerebrum comprises many discrete neuropil regions including the central body complex and mushroom bodies." [http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] +synonym: "protocerebral neuromere" EXACT [FlyBase:FBrf0092819] +xref: FBbt:00003627 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004732 ! segmental subdivision of nervous system +relationship: part_of UBERON:6000008 ! labral segment +relationship: part_of UBERON:6003626 ! insect supraesophageal ganglion + +[Term] +id: UBERON:6003632 +name: insect adult central complex +def: "A midline crossing complex of 4 synaptic neuropil domains of the adult brain: the ellipsoid body, the fan-shaped body, the paired noduli, and the protocerebral bridge. It is closely associated with another paired synaptic neuropil domain, the lateral complex. It lies in the middle of the brain between the pedunculi of the mushroom bodies and is bounded ventrally by the esophagus, dorsally by the pars intercerebralis and laterally by the antenno-glomerular tracts." [FlyBase:FBrf0049409, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] +synonym: "adult central body complex" EXACT [] +synonym: "central body" RELATED [] +synonym: "central body complex" RELATED [] +synonym: "CX" EXACT BRAIN_NAME_ABV [FlyBase:FBrf0224194] +xref: FBbt:00003632 +is_a: UBERON:6041000 ! insect synaptic neuropil block +relationship: develops_from UBERON:6007070 ! insect centro-posterior medial synaptic neuropil domain +relationship: part_of UBERON:6007145 ! insect adult protocerebrum + +[Term] +id: UBERON:6004203 +name: insect adult clypeo-labral anlage +def: "." [FBC:VH] +synonym: "A AdCly" RELATED [FBC:DOS] +xref: FBbt:00004203 +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0007688 ! anlage +relationship: develops_from UBERON:6005538 ! insect clypeo-labral primordium + +[Term] +id: UBERON:6004296 +name: insect sex comb +def: "A row of darkly pigmented, male specific chaetae located on the prothoracic metatarsal segment of the prothoracic leg. The number of chaetae (teeth) per sex comb varies between individuals, e.g.- Hannah-Alava and Stern report 10-13." [FlyBase:FBrf0011482, FlyBase:FBrf0012178] +synonym: "ctenidium" EXACT [FlyBase:FBrf0012178] +synonym: "metatarsal comb" EXACT [] +xref: FBbt:00004296 +is_a: UBERON:6100153 ! insect sensilla row +relationship: part_of UBERON:6007020 ! insect metatarsus of male prothoracic leg + +[Term] +id: UBERON:6004340 +name: insect wing hair +def: "The posteriorly oriented trichome of a cell of the wing blade. Each cell makes one of these trichomes at its posterior vertex." [FBC:DOS] +synonym: "wing trichome" RELATED [] +xref: FBbt:00004340 +is_a: UBERON:6004979 ! insect trichome +relationship: part_of UBERON:0000984 ! imaginal disc-derived wing + +[Term] +id: UBERON:6004475 +name: insect sclerite +def: "A region of integument whose external cuticular part is a hard, sclerotized plate." [FBC:gg] +synonym: "integumentary plate" EXACT [] +synonym: "plate" RELATED [] +xref: FBbt:00004475 +is_a: UBERON:6007284 ! insect region of integument + +[Term] +id: UBERON:6004476 +name: insect tergite +def: "The dorsal plate (sclerite) of an adult abdominal segment." [FlyBase:FBrf0007734, FlyBase:FBrf0111704] +synonym: "abdominal tergite" EXACT [] +xref: FBbt:00004476 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:6004475 ! insect sclerite +relationship: develops_from UBERON:6001792 ! insect anterior dorsal histoblast nest abdominal +relationship: develops_from UBERON:6001809 ! insect posterior dorsal histoblast nest abdominal +relationship: part_of UBERON:6003024 ! insect adult abdominal segment +relationship: part_of UBERON:6004788 ! insect adult external abdomen + +[Term] +id: UBERON:6004477 +name: insect sternite +def: "An adult ventral sclerite." [FlyBase:FBrf0007734, FlyBase:FBrf0111704] +synonym: "abdominal sternite" EXACT [] +xref: FBbt:00004477 +is_a: UBERON:6004475 ! insect sclerite + +[Term] +id: UBERON:6004481 +name: insect adult external head +xref: FBbt:00004481 +is_a: UBERON:6007289 ! insect tagmatic subdivision of integument +relationship: part_of UBERON:6003007 ! insect adult head +relationship: part_of UBERON:6005396 ! insect adult integumentary system + +[Term] +id: UBERON:6004519 +name: insect arista +def: "Highly specialised, slender sixth segment of the antenna covered in bristle-like outgrowths known as laterals. It extends laterally from the dorsal region of the third segment of the antenna." [FlyBase:FBrf0007734, FlyBase:FBrf0031004, FlyBase:FBrf0137012] +synonym: "segment 6" EXACT [] +xref: FBbt:00004519 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:6007149 ! insect segment of antenna +relationship: develops_from UBERON:6110811 ! insect presumptive arista + +[Term] +id: UBERON:6004520 +name: insect mouthpart +xref: FBbt:00004520 +is_a: UBERON:0001062 ! anatomical entity +relationship: part_of UBERON:6004481 ! insect adult external head + +[Term] +id: UBERON:6004521 +name: insect clypeus +def: "The anterior part of the head between the frons and the labrum, which occasionally may fuse with either one to form the frontoclypeus and the clypeolabrum. In the context of Drosophila refers to a round structure on the center of the frontal adult external head." [FBC:gg, FlyBase:FBrf0166419] +xref: FBbt:00004521 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:6004475 ! insect sclerite +relationship: develops_from UBERON:6001765 ! insect clypeo-labral disc +relationship: part_of UBERON:6004540 ! insect basiproboscis + +[Term] +id: UBERON:6004535 +name: insect proboscis +def: "The trunk-like extension of adult head, forming a protrusible sucking proboscis for the ingestion of liquid food (pg 425 Miller et al., 1950; pg 383, Ferris et al., 1950)." [FlyBase:FBrf0007734, FlyBase:FBrf0007735] +xref: FBbt:00004535 +is_a: UBERON:0000475 ! organism subdivision +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: develops_from UBERON:6001764 ! insect labial disc +relationship: part_of UBERON:6004520 ! insect mouthpart + +[Term] +id: UBERON:6004540 +name: insect basiproboscis +xref: FBbt:00004540 +is_a: UBERON:0010000 ! multicellular anatomical structure +relationship: part_of UBERON:6004520 ! insect mouthpart + +[Term] +id: UBERON:6004551 +name: insect adult external thorax +def: "." [FlyBase:FBrf0006943] +xref: FBbt:00004551 +is_a: UBERON:6007289 ! insect tagmatic subdivision of integument +relationship: part_of UBERON:6003018 ! insect adult thorax +relationship: part_of UBERON:6005396 ! insect adult integumentary system + +[Term] +id: UBERON:6004552 +name: insect tergum +def: "The upper, originally unpaired plate of the segmented insect body, which either independently or fused with a ventral plate covers the body dorsally, specifically that of the thorax." [FlyBase:FBrf0166419] +xref: FBbt:00004552 +is_a: UBERON:6007284 ! insect region of integument +relationship: part_of UBERON:6004551 ! insect adult external thorax + +[Term] +id: UBERON:6004578 +name: insect adult external mesothorax +xref: FBbt:00004578 +is_a: UBERON:6007285 ! insect segmental subdivision of integument +relationship: part_of UBERON:6003021 ! insect adult mesothoracic segment +relationship: part_of UBERON:6004551 ! insect adult external thorax + +[Term] +id: UBERON:6004579 +name: insect dorsal mesothorax +xref: FBbt:00004579 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:6007284 ! insect region of integument +relationship: develops_from UBERON:6001778 ! insect wing disc +relationship: part_of UBERON:6004578 ! insect adult external mesothorax + +[Term] +id: UBERON:6004580 +name: insect mesothoracic tergum +def: "The dorsal sclerites (tergites) of the mesothorax." [FBC:DOS] +synonym: "alinotum" EXACT [FlyBase:FBrf0111704] +synonym: "mesonotum" EXACT [FlyBase:FBrf0166419] +synonym: "notum" BROAD [] +xref: FBbt:00004580 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:6004552 ! insect tergum +relationship: develops_from UBERON:6006032 ! insect mesothoracic tergum primordium +relationship: part_of UBERON:6004579 ! insect dorsal mesothorax + +[Term] +id: UBERON:6004646 +name: insect tarsal segment +def: "A segment of the tarsus of the adult leg. The first tarsal segment, the metatarsus, is proximally connected to the tibia. Tarsal segments are covered in 8 longitudinal rows of bristles, with row 1 being the most ventral." [FlyBase:FBim0000836.html, FlyBase:FBrf0007734, FlyBase:FBrf0012178] +synonym: "tarsomere" EXACT [FlyBase:FBrf0111704] +xref: FBbt:00004646 +is_a: UBERON:6007150 ! insect segment of leg + +[Term] +id: UBERON:6004648 +name: insect metatarsus +def: "The first of the tarsal segments of the adult leg. It is located between the tibia and the second tarsal segment and is longer than the other tarsal segments. It has 8 longitudinal rows of bristles around the circumference." [FlyBase:FBim0000836, FlyBase:FBrf0007734, FlyBase:FBrf0012178, FlyBase:FBrf0111704] +synonym: "1st tarsal segment" EXACT [] +synonym: "basitarsus" EXACT [FlyBase:FBrf0111704] +synonym: "first segment of the tarsus" EXACT [] +synonym: "first tarsal segment" EXACT [] +synonym: "tarsal segment 1" EXACT [] +xref: FBbt:00004648 +is_a: UBERON:6004646 ! insect tarsal segment + +[Term] +id: UBERON:6004663 +name: insect prothoracic leg +def: "Leg of the prothoracic segment." [FBC:DOS] +synonym: "first leg" EXACT [] +synonym: "T1 leg" EXACT [] +xref: FBbt:00004663 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005895 ! insect leg +intersection_of: UBERON:0005895 ! insect leg +intersection_of: part_of UBERON:6003020 ! insect adult prothoracic segment +relationship: develops_from UBERON:6001781 ! insect prothoracic leg disc +relationship: part_of UBERON:6003020 ! insect adult prothoracic segment + +[Term] +id: UBERON:6004668 +name: insect prothoracic tarsal segment +def: "Tarsal segment of the adult prothoracic leg." [FBC:MMC] +xref: FBbt:00004668 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:6004646 ! insect tarsal segment +intersection_of: UBERON:6004646 ! insect tarsal segment +intersection_of: part_of UBERON:6004663 ! insect prothoracic leg +relationship: part_of UBERON:6004663 ! insect prothoracic leg + +[Term] +id: UBERON:6004670 +name: insect prothoracic metatarsus +def: "First tarsal segment of the prothoracic leg. Proximally, it articulates with the tibia and distally with the second tarsal segment. Its surface is covered with eight longitudinal rows of bristles and with transverse rows of bristles (TR) in the anterior compartment, between proximo-distal rows 7 and 8. There is sexual dimorphism in the number of TRs (transverse row bristles, TR). In males, 2 TRs are replaced by the sex comb and one central bristle." [FlyBase:FBrf0031004, FlyBase:FBrf0219028] +synonym: "prothoracic basitarsus" EXACT [FlyBase:FBrf0111704] +synonym: "prothoracic tarsal segment 1" EXACT [] +synonym: "T1 tarsal segment 1" EXACT [] +synonym: "T1 Ts1" EXACT [FlyBase:FBrf0219028] +xref: FBbt:00004670 +is_a: UBERON:6004648 ! insect metatarsus +is_a: UBERON:6004668 ! insect prothoracic tarsal segment +intersection_of: UBERON:6004648 ! insect metatarsus +intersection_of: part_of UBERON:6004663 ! insect prothoracic leg +relationship: develops_from UBERON:6110746 ! insect presumptive prothoracic metatarsus + +[Term] +id: UBERON:6004788 +name: insect adult external abdomen +xref: FBbt:00004788 +is_a: UBERON:6007289 ! insect tagmatic subdivision of integument +relationship: part_of UBERON:6003023 ! insect adult abdomen +relationship: part_of UBERON:6005396 ! insect adult integumentary system + +[Term] +id: UBERON:6004823 +name: insect analia +xref: FBbt:00004823 +is_a: UBERON:0000477 ! anatomical cluster +relationship: develops_from UBERON:6001784 ! insect genital disc +relationship: part_of UBERON:6004788 ! insect adult external abdomen + +[Term] +id: UBERON:6004824 +name: insect female analia +xref: FBbt:00004824 +is_a: UBERON:6004823 ! insect analia +relationship: develops_from UBERON:6001787 ! insect female genital disc + +[Term] +id: UBERON:6004825 +name: insect male analia +xref: FBbt:00004825 +is_a: UBERON:6004823 ! insect analia +relationship: develops_from UBERON:6001785 ! insect male genital disc + +[Term] +id: UBERON:6004979 +name: insect trichome +def: "Non-innervated projection of the cuticle around an actin-rich cellular process of an underlying epidermal cell." [FBC:DOS] +synonym: "cell hair" RELATED [] +xref: FBbt:00004979 +is_a: UBERON:6007245 ! insect cuticular specialization + +[Term] +id: UBERON:6004983 +name: insect embryonic/larval cuticle +synonym: "larval cuticle" EXACT [] +xref: FBbt:00004983 +is_a: UBERON:0001001 ! chitin-based cuticle +relationship: part_of UBERON:6005393 ! insect embryonic/larval integumentary system + +[Term] +id: UBERON:6004986 +name: insect third instar larval cuticle +xref: FBbt:00004986 +is_a: UBERON:6004983 ! insect embryonic/larval cuticle + +[Term] +id: UBERON:6005023 +name: insect imaginal precursor +def: "Structure that proliferates to produce a larval imaginal disc and which gives rise to adult tissues (Bate and Martinez Arias, 1991)." [FlyBase:FBrf0053815, FlyBase:FBrf0064789] +xref: FBbt:00005023 +is_a: UBERON:0005423 ! developing anatomical structure + +[Term] +id: UBERON:6005036 +name: insect tracheal pit +def: "Deep and narrow pit formed by the invagination of a tracheal placode in a late extended germ band embryo. Invagination of the placode begins during stage 11. Branches begin to bud from the pit during stage 11, with a dorsal and ventral stem being apparent by mid-stage 12. The pit closes over during stage 13. There are 10 pairs of tracheal pits - one pair in each tracheal metamere (each segment from T2 to A8). Pits are located in the central one third of each parasegment, with the most anterior in parasegment 4 and the most posterior in parasegment 14." [FlyBase:FBrf0064787, FlyBase:FBrf0089570] +synonym: "embryonic tracheal pit" EXACT [] +synonym: "tracheal sac" EXACT [FlyBase:FBrf0147036] +xref: FBbt:00005036 +is_a: UBERON:6005037 ! insect tracheal primordium + +[Term] +id: UBERON:6005037 +name: insect tracheal primordium +def: "Primordium of a single tracheal metamere of the embryonic/larval tracheal system from its appearance as a placode during stage 11 to the completion of fusion with adjacent tracheal metameres in stage 15/16. There are 10 pairs of tracheal primordia - one pair in each segment from T2 to A8. Each tracheal primordium originates as a slight depression in the lateral ectoderm during stage 10 known as a tracheal placode. During stage 11, these placodes invaginate to form tracheal pits that elongate and branch. These pits close over during stage 13. Fusion of tracheal primordia begins at stage 14 with fusion of the dorsal trunk primordia and is complete by early stage 16." [FlyBase:FBrf0089570] +synonym: "P2 TrachP" EXACT [FBC:DOS] +synonym: "tracheal placode" RELATED [] +synonym: "TrachP3" RELATED [] +xref: FBbt:00005037 +is_a: UBERON:0001048 ! primordium +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:6007046 ! insect dorsal ectoderm derivative +relationship: part_of UBERON:6005569 ! insect presumptive embryonic/larval tracheal system + +[Term] +id: UBERON:6005054 +name: insect spiracle +def: "Opening of the tracheal system on the surface of the body." [FlyBase:FBrf0166419] +xref: FBbt:00005054 +is_a: UBERON:6007288 ! insect integumentary specialisation +relationship: part_of UBERON:0005155 ! open tracheal system + +[Term] +id: UBERON:6005070 +name: obsolete visceral muscle +def: "The visceral musculature comprises circular and longitudinal fibers which surround the entire intestinal tract, with the exception of the recurrent layer of the proventriculus. The circular fibers derive from a bilaterally symmetrical band of mesodermal cells extending continuously throughout most of the germ band. The longitudinal fibers derive from clusters of mesodermal cells which appear during stage 12 at the posterior end of the embryo and migrate anteriorly." [FlyBase:FBrf0064793, FlyBase:FBrf0089570, https://github.com/obophenotype/insect_neuroanatomy_ontology/issues/8] +is_obsolete: true +consider: CL:0008007 +consider: FBbt:00005070 + +[Term] +id: UBERON:6005096 +name: insect stomatogastric nervous system +def: "A group of small, interconnected ganglia situated posterior to and between the two brain hemispheres and associated with the pharynx, esophagus and aorta." [FlyBase:FBrf0089570, http://www.ncbi.nlm.nih.gov/pubmed/12966498] +synonym: "stomodaeal nervous system" RELATED [FlyBase:FBrf0111704] +synonym: "stomodeal nervous system" RELATED [FlyBase:FBrf0111704] +xref: FBbt:00005096 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0011216 ! organ system subdivision +relationship: part_of UBERON:0001017 ! central nervous system + +[Term] +id: UBERON:6005168 +name: insect external sensory organ +synonym: "sensillum" NARROW [] +xref: FBbt:00005168 +is_a: UBERON:0000020 ! sense organ + +[Term] +id: UBERON:6005177 +name: insect chaeta +def: "A sensillum with a long, unicellular, setiform outgrowth that is strongly chitinized." [FlyBase:FBrf0111704, FlyBase:FBrf0166419] +synonym: "sensillum chaeticum" EXACT [FlyBase:FBrf0111704] +xref: FBbt:00005177 +is_a: UBERON:6007232 ! insect eo-type sensillum + +[Term] +id: UBERON:6005378 +name: insect wing margin +def: "The border or edge of the wing. It separates the dorsal and ventral compartments." [FBC:gg] +synonym: "margin" BROAD [] +xref: FBbt:00005378 +is_a: UBERON:6007284 ! insect region of integument +relationship: part_of UBERON:0000984 ! imaginal disc-derived wing + +[Term] +id: UBERON:6005393 +name: insect embryonic/larval integumentary system +synonym: "larval integumentary system" RELATED [] +xref: FBbt:00005393 +is_a: UBERON:0002416 ! integumental system +relationship: part_of UBERON:0002548 ! larva + +[Term] +id: UBERON:6005396 +name: insect adult integumentary system +synonym: "adult external" RELATED [] +synonym: "adult integument" EXACT [] +xref: FBbt:00005396 +is_a: UBERON:0002416 ! integumental system +relationship: part_of UBERON:0007023 ! adult organism + +[Term] +id: UBERON:6005413 +name: insect anlage in statu nascendi +def: "\"anlagen in statu nascendi\" are domains that do not yet coincide 1:1 with a later organ. Anlagen in statu nascendi are typically defined for the early blastoderm by the expression domains of genes which, in the late blastoderm or later, are expressed in specific anlagen, but initially come on in larger domains." [FlyBase:FBrf0178740] +synonym: "A0" RELATED [] +xref: FBbt:00005413 +is_a: UBERON:0002050 ! embryonic structure + +[Term] +id: UBERON:6005425 +name: insect visual anlage in statu nascendi +synonym: "A0Vis" RELATED [] +synonym: "Asn VisSys" RELATED [FBC:DOS] +xref: FBbt:00005425 +is_a: UBERON:6005413 ! insect anlage in statu nascendi + +[Term] +id: UBERON:6005427 +name: insect ectoderm anlage +xref: FBbt:00005427 +is_a: UBERON:0007688 ! anlage + +[Term] +id: UBERON:6005428 +name: insect dorsal ectoderm anlage +xref: FBbt:00005428 +is_a: UBERON:0007688 ! anlage +relationship: part_of UBERON:6005427 ! insect ectoderm anlage + +[Term] +id: UBERON:6005434 +name: insect visual anlage +synonym: "A VisSys" RELATED [FBC:DOS] +synonym: "AVis" RELATED [] +xref: FBbt:00005434 +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0007688 ! anlage +relationship: develops_from UBERON:6005425 ! insect visual anlage in statu nascendi +relationship: part_of UBERON:6000119 ! insect anterior ectoderm + +[Term] +id: UBERON:6005436 +name: insect trunk mesoderm anlage +synonym: "Asn/A TrMes" RELATED [FBC:DOS] +xref: FBbt:00005436 +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0007688 ! anlage +relationship: part_of UBERON:6000104 ! insect mesoderm anlage + +[Term] +id: UBERON:6005439 +name: insect clypeo-labral anlage +def: "." [FBC:DOS, FBC:VH] +synonym: "A Cly" RELATED [FBC:DOS] +synonym: "clypeo-labral specific anlage" RELATED [] +xref: FBbt:00005439 +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0007688 ! anlage +relationship: develops_from UBERON:6000094 ! clypeo-labral anlage in statu nascendi +relationship: part_of UBERON:6000119 ! insect anterior ectoderm + +[Term] +id: UBERON:6005461 +name: insect circulatory system primordium +synonym: "embryonic/larval circulatory system specific anlage" RELATED [] +xref: FBbt:00005461 +is_a: UBERON:0001048 ! primordium + +[Term] +id: UBERON:6005467 +name: insect lymph gland primordium +def: "." [FBC:VH] +synonym: "lymph gland specific anlage" RELATED [] +xref: FBbt:00005467 +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:6005461 ! insect circulatory system primordium +relationship: develops_from UBERON:6005541 ! insect cardiogenic mesoderm + +[Term] +id: UBERON:6005514 +name: insect adult clypeo-labral primordium +synonym: "A AdCly" RELATED [FBC:DOS] +xref: FBbt:00005514 +is_a: UBERON:0001048 ! primordium +is_a: UBERON:6001648 ! insect embryonic imaginal precursor +relationship: develops_from UBERON:6004203 ! insect adult clypeo-labral anlage +relationship: part_of UBERON:0000323 ! late embryo + +[Term] +id: UBERON:6005526 +name: insect dorsal epidermis primordium +synonym: "dorEpiP2" RELATED [] +synonym: "dorsal epidermis specific anlage" RELATED [] +xref: FBbt:00005526 +is_a: UBERON:0001048 ! primordium +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:6007046 ! insect dorsal ectoderm derivative + +[Term] +id: UBERON:6005533 +name: insect ventral epidermis primordium +synonym: "P2 iVenEp" RELATED [FBC:DOS] +synonym: "venEpiP2" RELATED [] +xref: FBbt:00005533 +is_a: UBERON:0001048 ! primordium +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:6025993 ! insect ventral ectoderm derivative +relationship: develops_from UBERON:0002346 ! neurectoderm + +[Term] +id: UBERON:6005538 +name: insect clypeo-labral primordium +synonym: "ClyP2" RELATED [] +xref: FBbt:00005538 +is_a: UBERON:0001048 ! primordium +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:6025991 ! insect anterior ectoderm derivative +relationship: develops_from UBERON:6005439 ! insect clypeo-labral anlage + +[Term] +id: UBERON:6005541 +name: insect cardiogenic mesoderm +synonym: "cardiac mesoderm" EXACT [] +synonym: "cardiac mesoderm primordium" RELATED [] +synonym: "CardMes" EXACT [] +synonym: "CardMesP2" EXACT [] +synonym: "P2 CardMes" EXACT [FBC:DOS] +xref: FBbt:00005541 +is_a: UBERON:6026002 ! insect visceral mesoderm derivative +relationship: part_of UBERON:0000922 ! embryo + +[Term] +id: UBERON:6005558 +name: insect ventral ectoderm +def: "." [FlyBase:FBrf0089570] +synonym: "P2 VenEc" RELATED [FBC:DOS] +synonym: "venEc" RELATED [] +xref: FBbt:00005558 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:6007045 ! insect trunk ectoderm + +[Term] +id: UBERON:6005569 +name: insect presumptive embryonic/larval tracheal system +def: "The sum of all the structures in the embryo that will develop into the embryonic/larval tracheal system. This corresponds to the tracheal primordia and their component tracheal branch primordia along with primordia of the spiracles." [FBC:DOS] +synonym: "embryonic tracheal system" RELATED [FBC:DOS] +xref: FBbt:00005569 +is_a: UBERON:6007116 ! insect presumptive embryonic/larval system + +[Term] +id: UBERON:6005805 +name: insect Bolwig organ +def: "Visual organ of the larva. It consists of a dense cluster of 12 ciliated photoreceptor neurons." [FlyBase:FBrf0089570] +synonym: "Bolwig's organ" EXACT [] +synonym: "dorsocaudal pharyngeal sense organ" RELATED [] +synonym: "embryonic Bolwig's organ" EXACT [] +synonym: "embryonic visual system" EXACT [] +synonym: "larval Bolwig's organ" EXACT [] +xref: FBbt:00005805 +is_a: UBERON:0000970 ! eye +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:6002642 ! insect embryonic/larval ocular segment sensillum +is_a: UBERON:6007233 ! insect internal sensillum +is_a: UBERON:6007242 ! insect embryonic/larval head sensillum +relationship: develops_from UBERON:6005830 ! insect Bolwig organ primordium +relationship: part_of UBERON:0000323 ! late embryo + +[Term] +id: UBERON:6005830 +name: insect Bolwig organ primordium +def: "." [FBC:DOS, FBC:VH] +synonym: "Bolwig's organ primordium" EXACT [] +synonym: "P1 BolOrg" RELATED [FBC:DOS] +xref: FBbt:00005830 +is_a: UBERON:0001048 ! primordium +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:6025991 ! insect anterior ectoderm derivative +relationship: develops_from UBERON:6001059 ! insect visual primordium + +[Term] +id: UBERON:6005831 +name: insect dorsal imaginal precursor +xref: FBbt:00005831 +is_a: UBERON:6005023 ! insect imaginal precursor + +[Term] +id: UBERON:6005913 +name: insect arista lateral +def: "A bristle-like, non-innervated outgrowth of the arista. Each lateral is formed from the outgrowth of a single polyploid central core cell." [FlyBase:FBrf0137012] +xref: FBbt:00005913 +is_a: UBERON:6004979 ! insect trichome +relationship: part_of UBERON:6004519 ! insect arista + +[Term] +id: UBERON:6006011 +name: insect pharate adult +def: "The developing adult after pupal-adult apolysis, i.e. from stage P8 (when yellow eye color first becomes visible through the pupal case), to eclosion." [FlyBase:FBrf0049147] +xref: FBbt:00006011 +is_a: UBERON:0000468 ! multicellular organism +relationship: develops_from UBERON:0003143 ! pupa + +[Term] +id: UBERON:6006032 +name: insect mesothoracic tergum primordium +def: "Region of the dorsal mesothoracic disc that will develop into the mesothoracic tergum." [FBC:DOS, FlyBase:FBrf0027793] +xref: FBbt:00006032 +is_a: UBERON:0000485 ! simple columnar epithelium +is_a: UBERON:0010371 ! ecto-epithelium +relationship: part_of UBERON:6001778 ! insect wing disc + +[Term] +id: UBERON:6007020 +name: insect metatarsus of male prothoracic leg +def: "First tarsal segment of the male prothoracic leg. In contrast to females, it has a sex comb, central bristle and 5 to 6 transverse rows of bristles (TR)." [FlyBase:FBrf0012178, FlyBase:FBrf0031004, FlyBase:FBrf0219028] +xref: FBbt:00007020 +is_a: UBERON:6004670 ! insect prothoracic metatarsus +relationship: part_of UBERON:0003101 ! male organism + +[Term] +id: UBERON:6007045 +name: insect trunk ectoderm +def: "The region of the ectoderm posterior to the cephalic furrow." [FBC:DOS] +xref: FBbt:00007045 +is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0000924 ! ectoderm + +[Term] +id: UBERON:6007046 +name: insect dorsal ectoderm derivative +xref: FBbt:00007046 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010000 ! multicellular anatomical structure +relationship: develops_from UBERON:6000112 ! insect dorsal ectoderm + +[Term] +id: UBERON:6007070 +name: insect centro-posterior medial synaptic neuropil domain +def: "A synaptic neuropil domain of the larval brain located posterior to the medial lobe of the mushroom body. It is separated from the centro-lateral compartment by the peduncle, and from the centro-posterior intermediate compartment by the antenno-cerebral tract to which it is connected via a branch." [FlyBase:FBrf0155900] +synonym: "centro-posterior medial neuropil" EXACT [] +synonym: "centro-posterior medial synaptic neuropil domain" EXACT [] +synonym: "CPM" RELATED [] +synonym: "larval central complex" EXACT [] +xref: FBbt:00007070 +is_a: UBERON:6040007 ! insect synaptic neuropil domain +relationship: part_of UBERON:6001925 ! insect embryonic/larval protocerebrum + +[Term] +id: UBERON:6007116 +name: insect presumptive embryonic/larval system +def: "The sum of all the developing presumptive components of a specific embryonic/larval system in an embryo." [FBC:DOS] +xref: FBbt:00007116 +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:6040003 ! insect non-connected developing system +intersection_of: UBERON:6040003 ! insect non-connected developing system +intersection_of: part_of UBERON:0000922 ! embryo + +[Term] +id: UBERON:6007145 +name: insect adult protocerebrum +def: "Protocerebrum of the adult brain." [FBC:SPR] +xref: FBbt:00007145 +is_a: UBERON:6003627 ! insect protocerebrum +relationship: part_of UBERON:6003011 ! insect adult labral segment +relationship: part_of UBERON:6110636 ! insect adult cerebral ganglion + +[Term] +id: UBERON:6007149 +name: insect segment of antenna +def: "Any appendage segment that is part of some antenna." [FBC:auto_generated_definition] +xref: FBbt:00007149 +is_a: UBERON:0010758 ! subdivision of organism along appendicular axis +intersection_of: UBERON:0010758 ! subdivision of organism along appendicular axis +intersection_of: part_of UBERON:0000972 ! antenna +relationship: part_of UBERON:0000972 ! antenna + +[Term] +id: UBERON:6007150 +name: insect segment of leg +def: "Any appendage segment (UBERON:6007018) that is part of some leg (UBERON:6004640)." [FBC:auto_generated_definition] +xref: FBbt:00007150 +is_a: UBERON:0010758 ! subdivision of organism along appendicular axis +intersection_of: UBERON:0010758 ! subdivision of organism along appendicular axis +intersection_of: part_of UBERON:0005895 ! insect leg +relationship: part_of UBERON:0005895 ! insect leg + +[Term] +id: UBERON:6007231 +name: insect external sensillum +def: "Sensillum which is embedded in the body wall and has a specific cuticular structure involved in the transduction of some sensory signal as a part." [FBC:DOS] +xref: FBbt:00007231 +is_a: UBERON:0002536 ! arthropod sensillum +is_a: UBERON:6005168 ! insect external sensory organ + +[Term] +id: UBERON:6007232 +name: insect eo-type sensillum +def: "Sensillum with innervated external cuticular sensory structure consisting of one or more bipolar sensory neurons, and 3 support cells: a trichogen cell which makes the external cuticular sensory structure, a thecogen cell which makes the socket that holds the base of the external sensory structure and a tormogen cell which makes the cuticular matrix (cap) at the tip of the innervating dendrite(s)." [FlyBase:FBrf0089570] +synonym: "eso" RELATED [] +xref: FBbt:00007232 +is_a: UBERON:6007231 ! insect external sensillum + +[Term] +id: UBERON:6007233 +name: insect internal sensillum +def: "Sensillum that is internal to the animal - i.e. having no part that is part of the cuticle." [FBC:DOS] +xref: FBbt:00007233 +is_a: UBERON:0002536 ! arthropod sensillum +is_a: UBERON:6007373 ! insect internal sense organ + +[Term] +id: UBERON:6007240 +name: insect embryonic/larval sensillum +def: "Any sensillum (UBERON:6007152) that is part of some larva (UBERON:6001727)." [FBC:auto_generated_definition] +synonym: "larval sensillum" EXACT [] +xref: FBbt:00007240 +is_a: UBERON:0002536 ! arthropod sensillum +is_a: UBERON:6002639 ! insect larval sense organ +intersection_of: UBERON:0002536 ! arthropod sensillum +intersection_of: part_of UBERON:0002548 ! larva + +[Term] +id: UBERON:6007242 +name: insect embryonic/larval head sensillum +def: "Any sensillum (UBERON:6007152) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] +synonym: "larval head sensillum" NARROW [] +xref: FBbt:00007242 +is_a: UBERON:0000963 ! head sensillum +is_a: UBERON:6007240 ! insect embryonic/larval sensillum +is_a: UBERON:6007280 ! insect embryonic/larval head sense organ +intersection_of: UBERON:0002536 ! arthropod sensillum +intersection_of: part_of UBERON:6001730 ! insect larval head + +[Term] +id: UBERON:6007245 +name: insect cuticular specialization +xref: FBbt:00007245 +is_a: UBERON:0000476 ! acellular anatomical structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0001001 ! chitin-based cuticle + +[Term] +id: UBERON:6007248 +name: insect chorionic specialization +def: "Specialized structure of the chorion of the egg." [FBC:MMC] +xref: FBbt:00007248 +is_a: UBERON:0000476 ! acellular anatomical structure +relationship: part_of UBERON:0000920 ! egg chorion + +[Term] +id: UBERON:6007280 +name: insect embryonic/larval head sense organ +def: "Any sense organ (UBERON:6005155) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] +synonym: "larval head sense organ" EXACT [] +xref: FBbt:00007280 +is_a: UBERON:6002639 ! insect larval sense organ +intersection_of: UBERON:0000020 ! sense organ +intersection_of: part_of UBERON:6001730 ! insect larval head +relationship: part_of UBERON:6001730 ! insect larval head + +[Term] +id: UBERON:6007284 +name: insect region of integument +def: "A region of cuticle and its underlying epidermis." [FBC:DOS] +xref: FBbt:00007284 +is_a: UBERON:0011216 ! organ system subdivision +relationship: part_of UBERON:0002416 ! integumental system + +[Term] +id: UBERON:6007285 +name: insect segmental subdivision of integument +def: "A segmental subdivision of the integument of the whole animal." [FBC:DOS] +xref: FBbt:00007285 +is_a: UBERON:6007284 ! insect region of integument + +[Term] +id: UBERON:6007288 +name: insect integumentary specialisation +xref: FBbt:00007288 +is_a: UBERON:6007284 ! insect region of integument + +[Term] +id: UBERON:6007289 +name: insect tagmatic subdivision of integument +xref: FBbt:00007289 +is_a: UBERON:6007284 ! insect region of integument + +[Term] +id: UBERON:6007331 +name: insect segmental subdivision of organ system +def: "The part of some organism that is part of some specified segment." [FBC:DOS] +xref: FBbt:00007331 +is_a: UBERON:0011216 ! organ system subdivision + +[Term] +id: UBERON:6007373 +name: insect internal sense organ +def: "Sense organ that is internal to the animal - i.e. having no part that is part of the cuticle." [FBC:DOS] +xref: FBbt:00007373 +is_a: UBERON:0000020 ! sense organ + +[Term] +id: UBERON:6007424 +name: insect epithelial furrow +def: "A region of an epithelium that folds inwards from the epithelial plane to form a furrow." [FBC:DOS] +xref: FBbt:00007424 +is_a: UBERON:0000483 ! epithelium + +[Term] +id: UBERON:6007435 +name: obsolete endocrine system component +synonym: "endocrine organ" RELATED [] +is_obsolete: true +consider: FBbt:00007435 + +[Term] +id: UBERON:6016022 +name: insect abdominal histoblast primordium +def: "." [FBC:VH] +synonym: "abdominal histoblast specific anlage" RELATED [] +xref: FBbt:00016022 +is_a: UBERON:0001048 ! primordium +is_a: UBERON:0002050 ! embryonic structure +relationship: develops_from UBERON:6017021 ! insect abdominal histoblast anlage + +[Term] +id: UBERON:6017021 +name: insect abdominal histoblast anlage +def: "." [FBC:VH] +xref: FBbt:00017021 +is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0007688 ! anlage +relationship: develops_from UBERON:6005526 ! insect dorsal epidermis primordium + +[Term] +id: UBERON:6025991 +name: insect anterior ectoderm derivative +def: "." [FBC:DOS] +xref: FBbt:00025991 +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: develops_from UBERON:6000119 ! insect anterior ectoderm + +[Term] +id: UBERON:6025993 +name: insect ventral ectoderm derivative +def: "." [FBC:DOS] +xref: FBbt:00025993 +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: develops_from UBERON:6005558 ! insect ventral ectoderm + +[Term] +id: UBERON:6026000 +name: insect trunk mesoderm derivative +def: "." [FBC:DOS] +xref: FBbt:00026000 +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: develops_from UBERON:6000128 ! insect trunk mesoderm + +[Term] +id: UBERON:6026002 +name: insect visceral mesoderm derivative +def: "." [FBC:DOS] +xref: FBbt:00026002 +is_a: UBERON:6026000 ! insect trunk mesoderm derivative +relationship: develops_from UBERON:6000130 ! insect visceral mesoderm + +[Term] +id: UBERON:6040003 +name: insect non-connected developing system +def: "The sum of all the anlagen and primordia that will develop into a single system." [FBC:DOS] +xref: FBbt:00040003 +is_a: UBERON:0000480 ! anatomical group +is_a: UBERON:0005423 ! developing anatomical structure + +[Term] +id: UBERON:6040005 +name: insect synaptic neuropil +def: "The part of the neuropil consisting largely of synapsing neuron projections." [FlyBase:FBrf0224194] +xref: FBbt:00040005 +is_a: UBERON:0000480 ! anatomical group +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0002606 ! neuropil + +[Term] +id: UBERON:6040007 +name: insect synaptic neuropil domain +def: "Region of synaptic neuropil whose boundaries are largely discontinuities in the density of presynaptic terminals: high density in the synaptic neuropil domain, lower or zero density outside this region. These boundaries often correspond to a boundary with glial sheath, tract neuropil or cortex." [FlyBase:FBrf0155900, FlyBase:FBrf0224194, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] +synonym: "fibrous neuropil" RELATED [] +synonym: "synaptic neuropil" RELATED [] +xref: FBbt:00040007 +is_a: UBERON:0011215 ! central nervous system cell part cluster +relationship: part_of UBERON:6040005 ! insect synaptic neuropil + +[Term] +id: UBERON:6041000 +name: insect synaptic neuropil block +def: "A closely associated group of synaptic neuropil domains." [FBC:DOS, FBC:KI] +synonym: "level 1 neuropil" EXACT [FlyBase:FBrf0224194] +xref: FBbt:00041000 +is_a: UBERON:0000480 ! anatomical group +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:6040005 ! insect synaptic neuropil + +[Term] +id: UBERON:6057001 +name: insect anterior-posterior subdivision of organism +xref: FBbt:00057001 +is_a: UBERON:0000475 ! organism subdivision + +[Term] +id: UBERON:6100153 +name: insect sensilla row +def: "A row of sensilla." [FBC:DOS] +xref: FBbt:00100153 +is_a: UBERON:0034926 ! anatomical row +relationship: composed_primarily_of UBERON:0002536 ! arthropod sensillum + +[Term] +id: UBERON:6110636 +name: insect adult cerebral ganglion +def: "The pre-oral neuropils of the adult brain located above, around and partially below the esophagus, including the optic lobes. It excludes the gnathal ganglion. Developmentally, it comprises three fused neuromeres: protocerebrum, deutocerebrum, and tritocerebrum." [FlyBase:FBrf0224194, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] +synonym: "brain" RELATED [] +synonym: "cerebrum" RELATED [] +synonym: "CRG" EXACT BRAIN_NAME_ABV [FlyBase:FBrf0224194] +synonym: "SPG" RELATED [] +synonym: "supraesophageal ganglion" RELATED [] +xref: FBbt:00110636 +is_a: UBERON:6003626 ! insect supraesophageal ganglion +relationship: part_of UBERON:6003624 ! insect adult brain + +[Term] +id: UBERON:6110746 +name: insect presumptive prothoracic metatarsus +def: "Region of the prothoracic leg disc that will develop into the prothoracic metatarsus." [FlyBase:FBrf0219028] +xref: FBbt:00110746 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0007688 ! anlage +relationship: part_of UBERON:6001781 ! insect prothoracic leg disc + +[Term] +id: UBERON:6110811 +name: insect presumptive arista +def: "Region of the antennal disc that will develop into the arista." [FlyBase:FBrf0031004] +xref: FBbt:00110811 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0007688 ! anlage +relationship: part_of UBERON:6001767 ! insect antennal disc + +[Term] +id: UBERON:7500033 +name: distal-most point of medial condyle of femur +def: "The distal-most point of the medial condyle of a femur." [https://orcid.org/0000-0003-2699-3066] +is_a: UBERON:0006983 ! anatomical point +intersection_of: UBERON:0006983 ! anatomical point +intersection_of: distalmost_part_of UBERON:0009984 ! medial condyle of femur +relationship: distalmost_part_of UBERON:0009984 ! medial condyle of femur +relationship: part_of UBERON:0009984 ! medial condyle of femur +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500034 +name: distal-most point of trochlea of humerus +def: "The distal-most point of the trochlea of a humerus." [https://orcid.org/0000-0003-2699-3066] +is_a: UBERON:0006983 ! anatomical point +intersection_of: UBERON:0006983 ! anatomical point +intersection_of: distalmost_part_of UBERON:0000144 ! trochlea of humerus +relationship: distalmost_part_of UBERON:0000144 ! trochlea of humerus +relationship: part_of UBERON:0000144 ! trochlea of humerus +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500035 +name: tip of tail +def: "Outermost point of a tail." [https://orcid.org/0000-0003-2699-3066] +is_a: UBERON:0006983 ! anatomical point +intersection_of: UBERON:0006983 ! anatomical point +intersection_of: distalmost_part_of UBERON:0002415 ! tail +relationship: distalmost_part_of UBERON:0002415 ! tail +relationship: part_of UBERON:0002415 ! tail +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500036 +name: line from caundal-sacral region of the vertebral column to the last vertebra +def: "An anatomical line along a tail that extends from the first caudal vertebra to the last cuadal vertebra." [https://orcid.org/0000-0003-2699-3066] +is_a: UBERON:0006800 ! anatomical line +intersection_of: UBERON:0006800 ! anatomical line +intersection_of: connects UBERON:0011271 ! caudal-sacral region of vertebral column +intersection_of: connects UBERON:7500035 ! tip of tail +relationship: connects UBERON:0011271 ! caudal-sacral region of vertebral column +relationship: connects UBERON:7500035 ! tip of tail +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500037 +name: line from helix of outer ear to intertragus incisure +def: "An anatomical line of a ear that connects the helix of the outer ear to the intertragus incisure of an ear." [https://orcid.org/0000-0003-2699-3066] +is_a: UBERON:0006800 ! anatomical line +intersection_of: UBERON:0006800 ! anatomical line +intersection_of: connects UBERON:0002488 ! helix of outer ear +intersection_of: connects UBERON:0036212 ! intertragic incisure +relationship: connects UBERON:0002488 ! helix of outer ear +relationship: connects UBERON:0036212 ! intertragic incisure +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500038 +name: line from the distal-most end of the longest nail to the posterior-most part of the foot +def: "An anatomical line of a hindfoot that connects the distal-most part of the longest nail to the posterior-most part of a foot." [https://orcid.org/0000-0003-2699-3066] +is_a: UBERON:0006800 ! anatomical line +intersection_of: UBERON:0006800 ! anatomical line +intersection_of: connects UBERON:7500039 ! posterior of pes +intersection_of: connects UBERON:7500040 ! tip of nail +relationship: connects UBERON:7500039 ! posterior of pes +relationship: connects UBERON:7500040 ! tip of nail +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500039 +name: posterior of pes +def: "The posterior-most point of a foot." [https://orcid.org/0000-0003-2699-3066] +is_a: UBERON:0006983 ! anatomical point +intersection_of: UBERON:0006983 ! anatomical point +intersection_of: in_posterior_side_of UBERON:0002387 ! pes +relationship: in_posterior_side_of UBERON:0002387 ! pes +relationship: part_of UBERON:0002387 ! pes +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500040 +name: tip of nail +def: "The distal-most point of a cutaneous appendage." [https://orcid.org/0000-0003-2699-3066] +is_a: UBERON:0006983 ! anatomical point +intersection_of: UBERON:0006983 ! anatomical point +intersection_of: distalmost_part_of UBERON:0000021 ! cutaneous appendage +relationship: distalmost_part_of UBERON:0000021 ! cutaneous appendage +relationship: part_of UBERON:0000021 ! cutaneous appendage +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500041 +name: tip of digit +def: "The distal-most point of a digit." [https://orcid.org/0000-0003-2699-3066] +is_a: UBERON:0006983 ! anatomical point +intersection_of: UBERON:0006983 ! anatomical point +intersection_of: distalmost_part_of UBERON:0001449 ! phalanx of pes +relationship: distalmost_part_of UBERON:0001449 ! phalanx of pes +relationship: part_of UBERON:0001449 ! phalanx of pes +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500042 +name: line from the distal-most end of the longest phalax of the foot to the posterior-most part of the foot +def: "An anatomical line of a hindfoot that connects the end of the longest digit to the posterior-most part of a foot." [https://orcid.org/0000-0003-2699-3066] +is_a: UBERON:0006800 ! anatomical line +intersection_of: UBERON:0006800 ! anatomical line +intersection_of: connects UBERON:7500039 ! posterior of pes +intersection_of: connects UBERON:7500041 ! tip of digit +relationship: connects UBERON:7500039 ! posterior of pes +relationship: connects UBERON:7500041 ! tip of digit +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500043 +name: line from tip of nose to the caudal-sacral region of the vertebral column +def: "An anatomical line of a body that connects the tip of the nose to the posterior-most part of the sacrum." [https://orcid.org/0000-0003-2699-3066] +is_a: UBERON:0006800 ! anatomical line +intersection_of: UBERON:0006800 ! anatomical line +intersection_of: connects UBERON:0011271 ! caudal-sacral region of vertebral column +intersection_of: connects UBERON:0012128 ! nose tip +relationship: connects UBERON:0011271 ! caudal-sacral region of vertebral column +relationship: connects UBERON:0012128 ! nose tip +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500044 +name: line from tip of nose to the posterior-most part of the last caudal vertebra +def: "An anatomical line of a body that connects the tip of the nose to the posterior-most part of a tail." [https://orcid.org/0000-0003-2699-3066] +is_a: UBERON:0006800 ! anatomical line +intersection_of: UBERON:0006800 ! anatomical line +intersection_of: connects UBERON:0012128 ! nose tip +intersection_of: connects UBERON:7500035 ! tip of tail +relationship: connects UBERON:0012128 ! nose tip +relationship: connects UBERON:7500035 ! tip of tail +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500045 +name: line of medial condyle of femur to greater trochanter +def: "An anatomical line of a femur that connects the medial condyle to the greater trochanter." [https://orcid.org/0000-0003-2699-3066] +is_a: UBERON:0006800 ! anatomical line +intersection_of: UBERON:0006800 ! anatomical line +intersection_of: connects UBERON:7500033 ! distal-most point of medial condyle of femur +intersection_of: connects UBERON:7500049 ! proximal-most point of greater trochanter of femur +relationship: connects UBERON:7500033 ! distal-most point of medial condyle of femur +relationship: connects UBERON:7500049 ! proximal-most point of greater trochanter of femur +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500046 +name: proximal-most point of head of femur +def: "The proximal-most point of the head of a femur." [https://orcid.org/0000-0003-2699-3066] +is_a: UBERON:0006983 ! anatomical point +intersection_of: UBERON:0006983 ! anatomical point +intersection_of: proximalmost_part_of UBERON:0006767 ! head of femur +relationship: part_of UBERON:0006767 ! head of femur +relationship: proximalmost_part_of UBERON:0006767 ! head of femur +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500047 +name: proximal-most point of head of humerus +def: "The proximal-most point of the head of a humerus." [https://orcid.org/0000-0003-2699-3066] +is_a: UBERON:0006983 ! anatomical point +intersection_of: UBERON:0006983 ! anatomical point +intersection_of: proximalmost_part_of UBERON:0006801 ! proximal head of humerus +relationship: part_of UBERON:0006801 ! proximal head of humerus +relationship: proximalmost_part_of UBERON:0006801 ! proximal head of humerus +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500048 +name: proximal-most point of ventral tubercle of humerus +def: "The proximal-most point of the ventral tubercle of a humerus." [https://orcid.org/0000-0003-2699-3066] +is_a: UBERON:0006983 ! anatomical point +intersection_of: UBERON:0006983 ! anatomical point +intersection_of: proximalmost_part_of UBERON:0011187 ! ventral tubercle of humerus +relationship: part_of UBERON:0011187 ! ventral tubercle of humerus +relationship: proximalmost_part_of UBERON:0011187 ! ventral tubercle of humerus +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500049 +name: proximal-most point of greater trochanter of femur +def: "The proximal-most point of the greater trochanter of a femur." [https://orcid.org/0000-0003-2699-3066] +is_a: UBERON:0006983 ! anatomical point +intersection_of: UBERON:0006983 ! anatomical point +intersection_of: proximalmost_part_of UBERON:0002503 ! greater trochanter +relationship: part_of UBERON:0002503 ! greater trochanter +relationship: proximalmost_part_of UBERON:0002503 ! greater trochanter +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500050 +name: line of medial condyle of femur to head of femur +def: "An anatomical line of a femur that connects the medial condyle to the head of a femur." [https://orcid.org/0000-0003-2699-3066] +is_a: UBERON:0006800 ! anatomical line +intersection_of: UBERON:0006800 ! anatomical line +intersection_of: connects UBERON:7500033 ! distal-most point of medial condyle of femur +intersection_of: connects UBERON:7500046 ! proximal-most point of head of femur +relationship: connects UBERON:7500033 ! distal-most point of medial condyle of femur +relationship: connects UBERON:7500046 ! proximal-most point of head of femur +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500051 +name: line from trochlea of humerus to proximal head of humerus +def: "An anatomical line of a humerus that connects the trochlea to the proximal head." [https://orcid.org/0000-0003-2699-3066] +is_a: UBERON:0006800 ! anatomical line +intersection_of: UBERON:0006800 ! anatomical line +intersection_of: connects UBERON:7500034 ! distal-most point of trochlea of humerus +intersection_of: connects UBERON:7500047 ! proximal-most point of head of humerus +relationship: connects UBERON:7500034 ! distal-most point of trochlea of humerus +relationship: connects UBERON:7500047 ! proximal-most point of head of humerus +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500052 +name: lower fourth secondary molar tooth +def: "The molar tooth of the lower jaw that is phylogenetically number 4." [https://orcid.org/0000-0003-2699-3066] +synonym: "lower fourth permanent molar tooth" EXACT [] +synonym: "m4" RELATED [] +is_a: UBERON:0013621 ! lower secondary molar tooth +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500053 +name: lower fourth secondary premolar tooth +def: "The premolar tooth of the lower jaw that is phylogenetically number 4." [https://orcid.org/0000-0003-2699-3066] +synonym: "lower fourth permanent premolar tooth" EXACT [] +synonym: "p4" RELATED [] +is_a: UBERON:0016453 ! lower secondary premolar tooth +is_a: UBERON:0018647 ! premolar tooth 4 +intersection_of: UBERON:0018647 ! premolar tooth 4 +intersection_of: part_of UBERON:0001710 ! lower jaw region +intersection_of: part_of UBERON:0007774 ! secondary dentition +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500054 +name: lower third secondary premolar tooth +def: "The premolar tooth of the lower jaw that is phylogenetically number 3." [https://orcid.org/0000-0003-2699-3066] +synonym: "lower third permanent premolar tooth" EXACT [] +synonym: "p3" RELATED [] +is_a: UBERON:0016453 ! lower secondary premolar tooth +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500055 +name: molar tooth 4 +def: "The molar tooth of the upper or lower jaw that is phylogenetically number 4." [https://orcid.org/0000-0003-2699-3066] +synonym: "fourth molar tooth" EXACT [] +synonym: "molar 4" EXACT [] +synonym: "molar 4 tooth" EXACT [] +is_a: UBERON:0003655 ! molar tooth +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500056 +name: premolar 3 +def: "The premolar tooth of the upper or lower jaw that is phylogenetically number 3." [https://orcid.org/0000-0003-2699-3066] +synonym: "premolar tooth 3" EXACT [] +synonym: "third premolar tooth" EXACT [] +is_a: UBERON:0007120 ! premolar tooth +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500057 +name: upper fourth secondary molar tooth +def: "The molar tooth of the upper jaw that is phylogenetically number 4." [https://orcid.org/0000-0003-2699-3066] +synonym: "M4" RELATED [] +synonym: "upper fourth permanent molar tooth" EXACT [] +is_a: UBERON:0013619 ! upper secondary molar tooth +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500058 +name: upper fourth secondary premolar tooth +def: "The premolar tooth of the upper jaw that is phylogenetically number 4." [https://orcid.org/0000-0003-2699-3066] +synonym: "P4" RELATED [] +synonym: "upper fourth permanent premolar tooth" EXACT [] +is_a: UBERON:0016452 ! upper secondary premolar tooth +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500059 +name: upper third secondary premolar tooth +def: "The premolar tooth of the upper jaw that is phylogenetically number 3." [https://orcid.org/0000-0003-2699-3066] +synonym: "P3" RELATED [] +synonym: "upper third permanent premolar tooth" EXACT [] +is_a: UBERON:0016452 ! upper secondary premolar tooth +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:7500060 +name: line from trochlea of humerus to ventral tubercle of humerus +def: "An anatomical line of a humerus that connects the trochlea to the ventral tubercle." [https://orcid.org/0000-0003-2699-3066] +is_a: UBERON:0006800 ! anatomical line +intersection_of: UBERON:0006800 ! anatomical line +intersection_of: connects UBERON:7500034 ! distal-most point of trochlea of humerus +intersection_of: connects UBERON:7500048 ! proximal-most point of ventral tubercle of humerus +relationship: connects UBERON:7500034 ! distal-most point of trochlea of humerus +relationship: connects UBERON:7500048 ! proximal-most point of ventral tubercle of humerus +created_by: https://orcid.org/0000-0003-2699-3066 + +[Term] +id: UBERON:8000004 +name: central retina +def: "Region of retina around the fovea that extends approximately for 6 mm. Central retina is considerably thick due to increased density of photoreceptors, particularly cones and their associated bipolar and ganglion cells." [https://webvision.med.utah.edu/book/part-i-foundations/simple-anatomy-of-the-retina/] +is_a: UBERON:0000073 ! regional part of nervous system +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: part_of UBERON:0000966 ! retina +created_by: http://orcid.org/0000-0001-5208-3432 + +[Term] +id: UBERON:8000005 +name: Henle's fiber layer +def: "This layer contains bundles of unmyelinated cone and rod photoreceptor axons terminating in the pedicles and spherules that synapse in the retinal outer plexiform layer (OPL)." [http://www.ncbi.nlm.nih.gov/pubmed/21071737] +synonym: "Henle fiber layer" EXACT [] +synonym: "HFL" EXACT [] +synonym: "nerve fiber layer of Henle" EXACT [] +is_a: UBERON:0022303 ! nervous system cell part layer +relationship: part_of UBERON:0000966 ! retina +created_by: http://orcid.org/0000-0001-5208-3432 + +[Term] +id: UBERON:8000006 +name: left side of back +def: "Left part of the organism dorsal to a horizontal plane and bounded on one side by the same transverse plane." [https://microbiomedb.org/] +is_a: UBERON:0001137 ! dorsum +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0001137 ! dorsum +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism +created_by: http://orcid.org/0000-0001-5208-3432 + +[Term] +id: UBERON:8000007 +name: right side of back +def: "Right part of the organism dorsal to a horizontal plane and bounded on one side by the same transverse plane." [https://microbiomedb.org/] +is_a: UBERON:0001137 ! dorsum +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0001137 ! dorsum +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism +relationship: in_right_side_of UBERON:0000468 ! multicellular organism +created_by: http://orcid.org/0000-0001-5208-3432 + +[Term] +id: UBERON:8000009 +name: Purkinje fiber network +def: "A collection of Purkinje fibers that receives signals from the right and left bundle branches and innervates the ventricular cardiac muscle. The Purkinje fiber network creates synchronized contractions of the heart ventricles." [http://www.ncbi.nlm.nih.gov/pubmed/26786210] +synonym: "Purkinje fibre network" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/26786210] +is_a: UBERON:0010131 {source="https://github.com/obophenotype/uberon/issues/1785", source="https://orcid.org/0000-0001-5208-3432", source="https://orcid.org/0000-0002-9791-0064"} ! conducting tissue of heart +is_a: UBERON:0018649 ! cardiac muscle tissue of ventricle +relationship: part_of UBERON:0002354 {source="https://github.com/obophenotype/uberon/issues/1785", source="https://orcid.org/0000-0001-5208-3432", source="https://orcid.org/0000-0002-9791-0064"} ! cardiac Purkinje fiber +created_by: http://orcid.org/0000-0001-5208-3432 + +[Term] +id: UBERON:8300000 +name: skin of scalp +def: "A zone of skin that is part of a scalp." [http://www.ncbi.nlm.nih.gov/books/NBK551565/] +synonym: "adult scalp zone of skin" EXACT [] +synonym: "scalp skin" EXACT [] +synonym: "scalp zone of skin" EXACT [] +synonym: "zone of skin of adult scalp" EXACT [] +synonym: "zone of skin of scalp" EXACT [] +xref: FMA:24757 +is_a: UBERON:0001084 ! skin of head +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0000403 ! scalp +relationship: part_of UBERON:0000403 ! scalp +created_by: http://orcid.org/0000-0001-9897-3238 + +[Term] +id: UBERON:8300001 +name: right forelimb +def: "A forelimb that is on the right side of a pectoral complex." [UBERONREF:0000003] +xref: FMA:7185 +is_a: UBERON:0002102 ! forelimb +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0002102 ! forelimb +intersection_of: in_right_side_of UBERON:0010708 ! pectoral complex +relationship: in_right_side_of UBERON:0010708 ! pectoral complex +created_by: http://orcid.org/0000-0001-9897-3238 + +[Term] +id: UBERON:8300002 +name: left forelimb +def: "A forelimb that is on the left side of a pectoral complex." [UBERONREF:0000003] +xref: FMA:7186 +is_a: UBERON:0002102 ! forelimb +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0002102 ! forelimb +intersection_of: in_left_side_of UBERON:0010708 ! pectoral complex +relationship: in_left_side_of UBERON:0010708 ! pectoral complex +created_by: http://orcid.org/0000-0001-9897-3238 + +[Term] +id: UBERON:8300003 +name: right hindlimb +def: "A hindlimb that is on the right side of a pelvic complex." [UBERONREF:0000003] +xref: FMA:7187 +is_a: UBERON:0002103 ! hindlimb +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0002103 ! hindlimb +intersection_of: in_right_side_of UBERON:0010709 ! pelvic complex +relationship: in_right_side_of UBERON:0010709 ! pelvic complex +created_by: http://orcid.org/0000-0001-9897-3238 + +[Term] +id: UBERON:8300004 +name: left hindlimb +def: "A hindlimb that is on the left side of a pelvic complex." [UBERONREF:0000003] +xref: FMA:7188 +is_a: UBERON:0002103 ! hindlimb +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0002103 ! hindlimb +intersection_of: in_left_side_of UBERON:0010709 ! pelvic complex +relationship: in_left_side_of UBERON:0010709 ! pelvic complex +created_by: http://orcid.org/0000-0001-9897-3238 + +[Term] +id: UBERON:8400001 +name: hepatic acinus zone 1 +def: "The region of the hepatic acinus that is closest to the arterial blood supply and has the highest oxygen concentration. Hepatocytes in this region are primarily involved in oxidative energy metabolism." [http://www.ncbi.nlm.nih.gov/pubmed/29763190] +synonym: "hepatic acinus periportal zone" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/28126520] +synonym: "liver lobule periportal zone" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/28126520] +is_a: UBERON:8400005 ! metabolic zone of liver +relationship: part_of UBERON:0001172 ! hepatic acinus +created_by: http://orcid.org/0000-0003-2034-601X +creation_date: 2020-09-08T14:14:21Z + +[Term] +id: UBERON:8400002 +name: hepatic acinus zone 3 +def: "The region of the hepatic acinus immediately surrounding the central veins. This region has the lowest oxygen concentration in the acinus. Hepatocytes in this region are the primary location for the biotransformation of drugs." [http://www.ncbi.nlm.nih.gov/pubmed/29763190] +synonym: "hepatic acinus centrilobular zone" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/28126520] +synonym: "hepatic acinus pericentral zone" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/28126520] +synonym: "hepatic acinus perivenous zone" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/28126520] +synonym: "liver lobule centrilobular region" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/28126520] +is_a: UBERON:8400005 ! metabolic zone of liver +relationship: part_of UBERON:0001172 ! hepatic acinus +created_by: http://orcid.org/0000-0003-2034-601X +creation_date: 2020-09-08T15:05:03Z + +[Term] +id: UBERON:8400003 +name: hepatic acinus zone 2 +def: "The region of the hepatic acinus in between zones 1 and 3. Blood in this region has an intermediate oxygen concentration relative to the other two zones of the hepatic acinus. Hepatocytes in this region have mixed functionality in comparison with those in zones 1 and 3." [http://www.ncbi.nlm.nih.gov/pubmed/29763190] +synonym: "hepatic acinus intermediary zone" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/28126520] +synonym: "liver lobule midzonal region" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/28126520] +is_a: UBERON:8400005 ! metabolic zone of liver +relationship: adjacent_to UBERON:8400001 ! hepatic acinus zone 1 +relationship: adjacent_to UBERON:8400002 ! hepatic acinus zone 3 +relationship: part_of UBERON:0001172 ! hepatic acinus +created_by: http://orcid.org/0000-0003-2034-601X +creation_date: 2020-09-08T15:15:57Z + +[Term] +id: UBERON:8400005 +name: metabolic zone of liver +def: "Any of the metabolic zones found in the hepatic acinus. Liver tissue is heterogenous at the level of morphometry and histochemistry. This heterogeneity is linked to the position of a cell within the functional unit of the tissue, which, in turn, is related to the blood supply: Cells located in the upstream zone differ from those in the downstream zone with respect to subcellular structures, key enzymes, translocators, and receptors and, therefore, have different metabolic capacities. This is the basis for \"metabolic zonation\", a concept first proposed for carbohydrate metabolism and later expanded to include amino acid and ammonia metabolism, xenobiotic metabolism, protective metabolism, and formation of plasma proteins." [http://www.ncbi.nlm.nih.gov/pubmed/8839925] +synonym: "hepatic acinus metabolic zone" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/8839925] +is_a: UBERON:0000063 ! organ subunit +is_a: UBERON:0004119 ! endoderm-derived structure +relationship: part_of UBERON:0002107 ! liver +created_by: http://orcid.org/0000-0003-2034-601X +creation_date: 202z-09-29T15:45:36Z + +[Term] +id: UBERON:8400006 +name: liver lobule periportal region +def: "The region of the liver lobule that is closest to the portal triad." [http://www.ncbi.nlm.nih.gov/pubmed/28126520] +synonym: "hepatic acinus zone 1" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/28126520] +is_a: UBERON:8400005 ! metabolic zone of liver +relationship: adjacent_to UBERON:0001279 ! portal triad +relationship: part_of UBERON:0004647 ! liver lobule +created_by: http://orcid.org/0000-0003-2034-601X +creation_date: 2020-10-05T12:56:57Z + +[Term] +id: UBERON:8400007 +name: liver lobule centrilobular region +def: "The region of the liver lobule that is closest to the central vein." [http://www.ncbi.nlm.nih.gov/pubmed/28126520] +synonym: "hepatic acinus zone 3" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/28126520] +is_a: UBERON:8400005 ! metabolic zone of liver +relationship: adjacent_to UBERON:0006841 ! central vein of liver +relationship: part_of UBERON:0004647 ! liver lobule +created_by: http://orcid.org/0000-0003-2034-601X +creation_date: 2020-10-05T15:43:18Z + +[Term] +id: UBERON:8400008 +name: liver lobule midzonal region +def: "The region of the liver lobule that is between the periportal and centrilobular regions." [http://www.ncbi.nlm.nih.gov/pubmed/28126520] +synonym: "hepatic acinus zone 2" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/28126520] +is_a: UBERON:8400005 ! metabolic zone of liver +relationship: adjacent_to UBERON:0001279 ! portal triad +relationship: adjacent_to UBERON:0006841 ! central vein of liver +relationship: part_of UBERON:0004647 ! liver lobule +created_by: http://orcid.org/0000-0003-2034-601X +creation_date: 2020-10-05T15:52:22Z + +[Term] +id: UBERON:8400021 +name: liver serosa +def: "Hepatic serous coat; peritoneal covering of the liver, enclosing almost all except for a triangular area on its posterior surface (the \"bare area of the liver\") and a smaller area where the liver and gallbladder are in direct contact." [https://medical-dictionary.thefreedictionary.com/serosa+of+liver, https://orcid.org/0000-0002-0449-2730] +synonym: "serosa of liver" EXACT [FMA:15811] +synonym: "tunica serosa hepatis" EXACT [https://medical-dictionary.thefreedictionary.com/serosa+of+liver] {synonymtypedef="LATIN"} +is_a: UBERON:0000042 ! serous membrane +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +intersection_of: UBERON:0000042 ! serous membrane +intersection_of: part_of UBERON:0002107 ! liver +relationship: part_of UBERON:0002107 ! liver +created_by: https://orcid.org/0000-0003-2034-601X + +[Term] +id: UBERON:8400023 +name: liver subserosa +def: "Subserosal tissue of liver. A zone of areolar connective tissue lying beneath the serous coat of the liver and distinguished with difficulty from the fibrous capsule of Glisson." [FMA:15812, https://medical-dictionary.thefreedictionary.com/subserosa+of+liver, https://orcid.org/0000-0002-0449-2730] +synonym: "hepatic subserosa" EXACT [] +synonym: "subserosal tissue of liver" EXACT [] +synonym: "subserous layer of liver" EXACT [] +synonym: "tela subserosa (hepar)" EXACT [FMA:15821] +synonym: "tela subserosa hepatis" EXACT [https://medical-dictionary.thefreedictionary.com/subserosa+of+liver] +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0012375 ! subserosa +intersection_of: UBERON:0012375 ! subserosa +intersection_of: part_of UBERON:0002107 ! liver +relationship: part_of UBERON:0002107 ! liver +created_by: https://orcid.org/0000-0003-2034-601X + +[Term] +id: UBERON:8400024 +name: subcapsular region of liver +def: "Region of liver parenchyma immediately below the capsule. This region is frequently specified in pathology diagnoses." [http://www.ncbi.nlm.nih.gov/pubmed/30992875, https://orcid.org/0000-0002-0449-2730] +synonym: "liver subcapsular region" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/30992875] +synonym: "liver subcapsular tissue" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/30992875] +synonym: "subcapsular tissue of liver" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/30992875] +is_a: UBERON:0001280 ! liver parenchyma +intersection_of: UBERON:0000353 ! parenchyma +intersection_of: adjacent_to UBERON:0016479 ! capsule of liver +intersection_of: part_of UBERON:0002107 ! liver +relationship: adjacent_to UBERON:0016479 ! capsule of liver +created_by: https://orcid.org/0000-0003-2034-601X + +[Term] +id: UBERON:8410000 +name: duodeno-jejunal junction +def: "The anatomical junction between the duodenum and the jejunum." [http://www.ncbi.nlm.nih.gov/pubmed/23961897, http://www.ncbi.nlm.nih.gov/pubmed/29064554] +synonym: "duodeno-jejunal flexure" EXACT [] +synonym: "duodenojejunal flexure" EXACT [] +synonym: "duodenojejunal junction" EXACT [] +synonym: "flexura duodenojejunalis" EXACT LATIN [http://en.wikipedia.org/wiki/Duodenojejunal_flexure] +xref: FMA:15957 +xref: https://orcid.org/0000-0003-4183-8865 +xref: TA2:2952 +xref: WikipediaVersioned:Duodenojejunal_flexure&oldid=937307798 +is_a: UBERON:8410024 ! intestinal junction +intersection_of: UBERON:0007651 ! anatomical junction +intersection_of: connects UBERON:0002114 ! duodenum +intersection_of: connects UBERON:0002115 ! jejunum +relationship: connects UBERON:0002114 ! duodenum +relationship: connects UBERON:0002115 ! jejunum +relationship: part_of UBERON:0002108 ! small intestine + +[Term] +id: UBERON:8410010 +name: fimbria of uterine tube +def: "A fringe of tissue around the ostium of the fallopian tube, in the direction of the ovary." [WikipediaVersioned:Fallopian_tube&oldid=998395727] +subset: added_for_HCA +synonym: "fimbria of fallopian tube" EXACT [] +synonym: "fimbriae of fallopian tube" EXACT [] +synonym: "fimbriae of uterine tube" EXACT [] +xref: FMA:18308 +xref: http://orcid.org/0000-0001-7505-5418 +is_a: UBERON:0003889 ! fallopian tube +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: UBERON:8410016 +name: descending sigmoid junction +def: "The anatomical junction between the descending colon and the sigmoid colon." [http://www.ncbi.nlm.nih.gov/pubmed/27233374, https://orcid.org/0000-0003-4183-8865] +synonym: "descending-sigmoid colon junction" EXACT [] +synonym: "descending-sigmoid junction" EXACT [] +synonym: "sigmoid junction" BROAD [] +is_a: UBERON:8410024 ! intestinal junction +intersection_of: UBERON:0007651 ! anatomical junction +intersection_of: connects UBERON:0001158 ! descending colon +intersection_of: connects UBERON:0001159 ! sigmoid colon +relationship: connects UBERON:0001158 ! descending colon +relationship: connects UBERON:0001159 ! sigmoid colon +relationship: part_of UBERON:0000168 ! proximal-distal subdivision of colon +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: UBERON:8410017 +name: left colic vein +def: "A portal vein that drains the descending colon. It is a tributary of the inferior mesenteric vein, and follows the path of its corresponding artery, the left colic artery." [https://orcid.org/0000-0003-4183-8865, WikipediaVersioned:Left_colic_vein&oldid=964575339] +xref: FMA:15394 +is_a: UBERON:0002017 ! portal vein +intersection_of: UBERON:0002017 ! portal vein +intersection_of: drains UBERON:0001158 ! descending colon +intersection_of: tributary_of UBERON:0001215 ! inferior mesenteric vein +relationship: drains UBERON:0001158 ! descending colon +relationship: part_of UBERON:0001215 ! inferior mesenteric vein +relationship: tributary_of UBERON:0001215 ! inferior mesenteric vein +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: UBERON:8410018 +name: right colic vein +def: "A portal vein that drains the ascending colon. It is a tributary of the superior mesenteric vein, and travels with its corresponding artery, the right colic artery." [https://orcid.org/0000-0003-4183-8865, WikipediaVersioned:Right_colic_vein&oldid=870898828] +xref: FMA:15407 +is_a: UBERON:0002017 ! portal vein +intersection_of: UBERON:0002017 ! portal vein +intersection_of: drains UBERON:0001156 ! ascending colon +intersection_of: tributary_of UBERON:0001138 ! superior mesenteric vein +relationship: drains UBERON:0001156 ! ascending colon +relationship: part_of UBERON:0001138 ! superior mesenteric vein +relationship: tributary_of UBERON:0001138 ! superior mesenteric vein +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: UBERON:8410019 +name: jejuno-ileal junction +def: "The area where the jejunum ends and the ileum part of the intestine begins. Although there is no clear distinct section, the ileum is narrower and has smaller villi than the jejunum." [http://www.ncbi.nlm.nih.gov/pubmed/21802415, https://doi.org/10.1016/B978-1-4377-2206-2.00068-3, https://orcid.org/0000-0003-4183-8865] +synonym: "jejunoileal junction" EXACT [] +is_a: UBERON:8410024 ! intestinal junction +intersection_of: UBERON:0007651 ! anatomical junction +intersection_of: connects UBERON:0002115 ! jejunum +intersection_of: connects UBERON:0002116 ! ileum +relationship: connects UBERON:0002115 ! jejunum +relationship: connects UBERON:0002116 ! ileum +relationship: part_of UBERON:0002108 ! small intestine +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: UBERON:8410021 +name: inguinal region skin +def: "The skin covering the inguinal region between the abdomen and the thigh on either side of the pubic bone." [http://orcid.org/0000-0001-7505-5418, http://www.ncbi.nlm.nih.gov/pubmed/32327715, http://www.ncbi.nlm.nih.gov/pubmed/468709, WikipediaVersioned:Groin&oldid=998393002] +subset: added_for_HCA +synonym: "groin skin" EXACT [] +synonym: "inguinal skin" EXACT [] +synonym: "skin of groin" EXACT [] +synonym: "skin of inguinal region" EXACT [] +synonym: "zone of skin of groin" EXACT [] +synonym: "zone of skin of inguinal region" EXACT [] +is_a: UBERON:0003836 ! abdominal segment skin +intersection_of: UBERON:0000014 ! zone of skin +intersection_of: part_of UBERON:0008337 ! inguinal part of abdomen +relationship: part_of UBERON:0008337 ! inguinal part of abdomen + +[Term] +id: UBERON:8410022 +name: left colic artery +def: "The first branch of the inferior mesenteric artery (IMA) is the left colic artery. The left colic artery supplies blood flow to the distal third of the transverse colon and the entirety of the descending colon. Once diverging from the IMA, the left colic artery runs anterior to the left ureter, left internal spermatic vessels (males), and psoas major before branching into its ascending and descending segments." [http://www.ncbi.nlm.nih.gov/pubmed/29489246, https://orcid.org/0000-0003-4183-8865] +xref: FMA:14826 +is_a: UBERON:0004573 ! systemic artery +relationship: branching_part_of UBERON:0001183 ! inferior mesenteric artery +relationship: part_of UBERON:0001183 ! inferior mesenteric artery +relationship: supplies UBERON:0001157 ! transverse colon +relationship: supplies UBERON:0001158 ! descending colon +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: UBERON:8410023 +name: right colic artery +def: "The right colic artery may arise directly from the superior mesenteric artery (SMA) but often arises from a common trunk with the ileocolic artery or middle colic artery. It supplies the ascending colon." [https://orcid.org/0000-0003-4183-8865, ISBN:9780443103735] +xref: FMA:14811 +is_a: UBERON:0001637 ! artery +relationship: supplies UBERON:0001156 ! ascending colon + +[Term] +id: UBERON:8410024 +name: intestinal junction +def: "An anatomical junction between two parts of the intestine." [ORCID:0000-0002-7073-9172] +synonym: "junction of intestine" EXACT [] +is_a: UBERON:1100000 ! digestive tract junction +intersection_of: UBERON:0007651 ! anatomical junction +intersection_of: connects UBERON:0004921 ! subdivision of digestive tract +intersection_of: part_of UBERON:0000160 ! intestine +relationship: part_of UBERON:0000160 ! intestine +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: UBERON:8410025 +name: transition zone of prostate +def: "The region of the prostate gland anterior to the central and peripheral zones, surrounding the proximal urethra. It is the zone of the human prostate gland that grows the most throughout life, and is responsible for benign prostatic hypertrophy." [http://www.ncbi.nlm.nih.gov/pubmed/30566875, https://orcid.org/0000-0002-7431-4139] +subset: added_for_HCA +synonym: "prostate transition zone" EXACT [] +synonym: "transition zone of human prostate" NARROW [] +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0034944 ! zone of organ +relationship: part_of UBERON:0002367 ! prostate gland +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: UBERON:8410026 +name: peripheral zone of prostate +def: "The region of the prostate that is located posterior to the central and transition zones, surrounding the distal urethra. It is the zone of origin for the vast majority of human prostatic cancers." [http://www.ncbi.nlm.nih.gov/pubmed/30566875, https://orcid.org/0000-0002-7431-4139] +subset: added_for_HCA +synonym: "peripheral zone of human prostate" NARROW [] +synonym: "prostate peripheral zone" EXACT [] +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0034944 ! zone of organ +relationship: part_of UBERON:0002367 ! prostate gland +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: UBERON:8410027 +name: central zone of prostate +def: "The region of the prostate gland that is located between the peripheral and transition zones, surrounding the ejaculatory ducts. It gives rise to a very small percentage of human prostate cancers, often aggressive and invading the seminal vesicles." [http://www.ncbi.nlm.nih.gov/pubmed/30566875, https://orcid.org/0000-0002-7431-4139] +subset: added_for_HCA +synonym: "central zone of human prostate" NARROW [] +synonym: "prostate central zone" EXACT [] +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0034944 ! zone of organ +relationship: part_of UBERON:0002367 ! prostate gland + +[Term] +id: UBERON:8410033 +name: lymph node vein +def: "A vein where lymph node venules condense and which exits at the lymph node hilum. It is also called hilar vein." [http://orcid.org/0000-0003-3440-1876, http://www.ncbi.nlm.nih.gov/pubmed/17067937, WikipediaVersioned:Lymph_node&oldid=1001655735#Structure] +synonym: "hilar vein of lymph node" EXACT [] +synonym: "vein of lymph node" EXACT [] +is_a: UBERON:0001638 ! vein +intersection_of: UBERON:0001638 ! vein +intersection_of: drains UBERON:0000029 ! lymph node +relationship: drains UBERON:0000029 ! lymph node +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: UBERON:8410034 +name: lymph node artery +def: "An artery that enters the lymph node at the hilum and branches into smaller arterioles." [http://orcid.org/0000-0003-3440-1876, http://www.ncbi.nlm.nih.gov/pubmed/17067937, WikipediaVersioned:Lymph_node&oldid=1001655735#Structure] +synonym: "artery of lymph node" EXACT [] +synonym: "hilar artery of lymph node" EXACT [] +is_a: UBERON:0001637 ! artery +intersection_of: UBERON:0001637 ! artery +intersection_of: supplies UBERON:0000029 ! lymph node +relationship: supplies UBERON:0000029 ! lymph node + +[Typedef] +id: RO:0002473 +alt_id: UBREL:0000002 + +[Typedef] +id: RO:0002488 +alt_id: BFO:0000068 + +[Typedef] +id: RO:0002492 +alt_id: BFO:0000069 + +[Typedef] +id: aboral_to +name: aboral_to +def: "nearer to the aboral opening of the organism, on the oral-aboral axis." [BSPO:cjm] +xref: BSPO:0015202 +is_transitive: true + +[Typedef] +id: action_notes +name: actions_notes +def: "Notes on how instances of this class functon biomechanically." [https://orcid.org/0000-0002-6601-2165] +xref: UBPROP:0000014 +is_metadata_tag: true + +[Typedef] +id: adjacent_to +name: adjacent_to +def: "x adjacent_to y iff: x and y share a boundary" [] +xref: RO:0002220 +is_symmetric: true + +[Typedef] +id: ambiguous_for_taxon +name: ambiguous_for_taxon +def: "S ambiguous_for_taxon T if the class S does not have a clear referent in taxon T. An example would be the class 'manual digit 1', which encompasses a homology hypotheses that is accepted for some species (e.g. human and mouse), but does not have a clear referent in Aves - the referent is dependent on the hypothesis embraced, and also on the ontogenetic stage." [PHENOSCPAE:asilomar_mtg] +xref: RO:0002173 +is_metadata_tag: true +is_class_level: true + +[Typedef] +id: anastomoses_with +name: anastomoses with +xref: anastomoses_with + +[Typedef] +id: anterior_to +name: anterior_to +def: "x anterior_to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail: bearer" [http://orcid.org/0000-0002-6601-2165] +xref: BSPO:0000096 +is_transitive: true +created_by: cjm +creation_date: 2009-07-31T02:15:46Z + +[Typedef] +id: anteriorly_connected_to +name: anteriorly connected to +def: "x anteriorly_connected_to y iff the anterior part of x is connected to y. i.e. x connected_to y and x posterior_to y." [http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern] +xref: anteriorly_connected_to +is_a: connected_to ! connected to +is_a: posterior_to ! posterior_to +is_a: transitively_anteriorly_connected_to ! transitively anteriorly connected to + +[Typedef] +id: appendage_segment_number +name: appendage segment number +def: "x appendage_segment_number N if and only if (i) x is a appendage_segment, and (ii) x is appendage_segment number N in a series of appendage_segments repeated along an proximo-distal axis, with appendage_segment_number 1 being the proximalmost appendage_segment (in tetrapods this would be the stylopod, as we do not classify girdles as appendage segments)." [https://orcid.org/0000-0002-6601-2165] +comment: Examples: in dropsphila coxa=1, trochanter=2, femur=3, tibia=4, tarsal segments 1-5=5-9, pretarsus=10 +xref: UBPROP:0000110 +is_metadata_tag: true + +[Typedef] +id: attaches_to +name: attaches_to +xref: RO:0002371 +is_a: attaches_to_part_of ! attaches_to_part_of +is_a: connects ! connects + +[Typedef] +id: attaches_to_part_of +name: attaches_to_part_of +xref: RO:0002177 +equivalent_to_chain: attaches_to part_of ! part of + +[Typedef] +id: axiom_lost_from_external_ontology +name: axiom_lost_from_external_ontology +def: "A textual description of an axiom loss in this ontology compared to an external ontology." [https://orcid.org/0000-0002-6601-2165] +comment: This annotation property may be replaced with an annotation property from an external ontology such as IAO +xref: UBPROP:0000002 +is_metadata_tag: true + +[Typedef] +id: bearer_of +name: bearer of +xref: RO:0000053 + +[Typedef] +id: boundary_of +name: boundary of +xref: RO:0002000 + +[Typedef] +id: bounding_layer_of +name: bounding layer of +comment: A relationship that applies between a continuant and its outer, bounding layer. Examples include the relationship between a multicellular organism and its integument, between an animal cell and its plasma membrane, and between a membrane bound organelle and its outer/bounding membrane. +xref: RO:0002007 +is_a: part_of ! part of + +[Typedef] +id: branching_part_of +name: branching_part_of +xref: RO:0002380 +is_a: part_of ! part of +inverse_of: has_branching_part ! has branching part + +[Typedef] +id: capable_of +name: capable of +xref: RO:0002215 +is_a: functionally_related_to ! functionally related to + +[Typedef] +id: capable_of_part_of +name: capable of part of +xref: RO:0002216 +is_a: functionally_related_to ! functionally related to + +[Typedef] +id: channel_for +name: channel for +synonym: "carries" BROAD [] +xref: channel_for +domain: UBERON:0004111 ! anatomical conduit +range: UBERON:0000463 ! organism substance + +[Typedef] +id: channels_from +name: channels_from +xref: channels_from +is_transitive: true + +[Typedef] +id: channels_into +name: channels_into +xref: channels_into +is_transitive: true + +[Typedef] +id: child_nucleus_of +name: child nucleus of +xref: RO:0002476 + +[Typedef] +id: child_nucleus_of_in_hermaphrodite +name: child nucleus of in hermaphrodite +xref: RO:0002477 + +[Typedef] +id: child_nucleus_of_in_male +name: child nucleus of in male +xref: RO:0002478 + +[Typedef] +id: composed_primarily_of +name: composed primarily of +def: "x composed_primarily_of y iff: more than half of the mass of x is made from parts of y" [] +xref: RO:0002473 +is_a: has_part ! has part + +[Typedef] +id: conduit_for +name: conduit for +def: "x is a conduit for y iff y passes through the lumen of x." [] +xref: conduit_for + +[Typedef] +id: confers_advantage_in +name: confers_advantage_in +synonym: "adapted_for" NARROW [] +xref: RO:0002322 + +[Typedef] +id: connected_to +name: connected to +def: "Binary relationship: x connected_to y if and only if there exists some z such that z connects x and y in a ternary connected_to(x,y,z) relationship." [http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern] +comment: Connection does not imply overlaps. +xref: RO:0002170 +is_a: transitively_connected_to ! transitively_connected to + +[Typedef] +id: connects +name: connects +def: "Binary relationship: z connects x if and only if there exists some y such that z connects x and y in a ternary connected_to(x,y,z) relationship." [http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern] +xref: RO:0002176 + +[Typedef] +id: contains +name: contains +xref: RO:0001019 + +[Typedef] +id: contains_process +name: contains process +xref: BFO:0000067 + +[Typedef] +id: continuous_with +name: continuous_with +xref: RO:0002150 +is_symmetric: true + +[Typedef] +id: contributes_to_morphology_of +name: contributes to morphology of +xref: RO:0002433 + +[Typedef] +id: curator_notes +name: curator notes +xref: IAO:0000232 +is_metadata_tag: true + +[Typedef] +id: dc-contributor +name: contributor +xref: http://purl.org/dc/elements/1.1/contributor +is_metadata_tag: true + +[Typedef] +id: dc-creator +name: creator +xref: http://purl.org/dc/elements/1.1/creator +is_metadata_tag: true + +[Typedef] +id: dc-description +name: description +xref: http://purl.org/dc/elements/1.1/description +is_metadata_tag: true + +[Typedef] +id: dc-publisher +name: publisher +xref: http://purl.org/dc/elements/1.1/publisher +is_metadata_tag: true + +[Typedef] +id: dc-source +name: derived from resource +xref: http://purl.org/dc/elements/1.1/source +is_metadata_tag: true + +[Typedef] +id: dc-title +name: title +xref: http://purl.org/dc/elements/1.1/title +is_metadata_tag: true + +[Typedef] +id: dcterms-isReferencedBy +name: is referenced by +xref: http://purl.org/dc/terms/isReferencedBy +is_metadata_tag: true + +[Typedef] +id: dcterms-license +name: license +xref: http://purl.org/dc/terms/license +is_metadata_tag: true + +[Typedef] +id: deep_to +name: deep_to +def: "Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines." [http://orcid.org/0000-0002-6601-2165] +xref: BSPO:0000107 +is_transitive: true + +[Typedef] +id: dental_formula +name: dental formula +def: "Syntax: upper/lower = I.C.P.M / I.C.P.M. When used with generic tooth class applies to both deciduous and primary. Should also be used with a taxon property." [http://en.wikipedia.org/wiki/Dentition#Dental_formula] +xref: UBPROP:0000113 +is_metadata_tag: true + +[Typedef] +id: depicted_by +name: depicted by +xref: depicted:by +is_metadata_tag: true + +[Typedef] +id: development_notes +name: development_notes +def: "Notes on the ontogenic development of instances of this class." [https://orcid.org/0000-0002-6601-2165] +xref: UBPROP:0000011 +is_metadata_tag: true + +[Typedef] +id: developmentally_contributes_to +name: developmentally_contributes_to +xref: RO:0002255 +holds_over_chain: develops_into part_of +is_a: has_potential_to_developmentally_contribute_to ! has potential to developmentally contribute to + +[Typedef] +id: developmentally_induced_by +name: developmentally_induced_by +def: "t1 developmentally_induced_by t2 if there is a process of organ induction (GO:0001759) with t1 and t2 as interacting participants. t2 causes t1 to change its fate from a precursor tissue type T to T', where T' develops_from T." [GO:0001759] +comment: sources for developmentally_induced_by relationships in Uberon: Developmental Biology, Gilbert, 8th edition, figure 6.5(F) +xref: RO:0002256 + +[Typedef] +id: developmentally_preceded_by +name: developmentally preceded by +xref: RO:0002258 + +[Typedef] +id: developmentally_replaces +name: developmentally_replaces +xref: RO:0002285 + +[Typedef] +id: develops_from +name: develops_from +xref: RO:0002202 +holds_over_chain: part_of develops_from +is_transitive: true +is_a: has_developmental_contribution_from ! has developmental contribution from +inverse_of: develops_into ! develops_into +transitive_over: part_of ! part of + +[Typedef] +id: develops_from_part_of +name: develops_from_part_of +xref: RO:0002225 +holds_over_chain: directly_develops_from part_of +is_a: develops_from ! develops_from + +[Typedef] +id: develops_in +name: develops_in +comment: This relation take from EHDAA2 - precise semantics yet to be defined +xref: RO:0002226 + +[Typedef] +id: develops_into +name: develops_into +xref: RO:0002203 +is_a: has_potential_to_develop_into ! has potential to develop into + +[Typedef] +id: directly_develops_from +name: directly_develops_from +xref: RO:0002207 + +[Typedef] +id: distal_to +name: distal_to +def: "x distal_to y iff x is further along the proximo-distal axis than y, towards the appendage tip. A proximo-distal axis extends from tip of an appendage (distal) to where it joins the body (proximal)." [http://orcid.org/0000-0002-6601-2165] +xref: BSPO:0000097 + +[Typedef] +id: distally_connected_to +name: distally connected to +def: "x distally_connected_to y iff the distal part of x is connected to y. i.e. x connected_to y and x proximal_to y." [http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern] +xref: distally_connected_to +is_a: connected_to ! connected to +is_a: proximal_to ! proximal_to +is_a: transitively_distally_connected_to ! transitively distally connected to +inverse_of: proximally_connected_to ! proximally connected to + +[Typedef] +id: distalmost_part_of +name: distalmost_part_of +def: "X distalmost_part_of Y <=> X is part_of Y and X is adjacent_to the distal boundary of Y" [https://orcid.org/0000-0002-6601-2165] +xref: BSPO:0001108 +is_a: in_distal_side_of ! in_distal_side_of + +[Typedef] +id: doap-GitRepository +name: Git repository +xref: GitRepository +is_metadata_tag: true + +[Typedef] +id: doap-SVNRepository +name: SVN repository +xref: SVNRepository +is_metadata_tag: true + +[Typedef] +id: doap-bug-database +name: bug database +xref: bug-database +is_metadata_tag: true + +[Typedef] +id: doap-mailing-list +name: mailing list +xref: mailing-list +is_metadata_tag: true + +[Typedef] +id: doap-wiki +name: wiki +xref: wiki +is_metadata_tag: true + +[Typedef] +id: dorsal_to +name: dorsal_to +def: "x dorsal_to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly)." [http://orcid.org/0000-0002-6601-2165] +xref: BSPO:0000098 +is_transitive: true +inverse_of: ventral_to ! ventral_to + +[Typedef] +id: drains +name: drains +comment: source: Wikipedia +synonym: "drains blood from" EXACT [] +synonym: "drains from" EXACT [] +xref: RO:0002179 +domain: UBERON:0001638 ! vein +is_a: connected_to ! connected to + +[Typedef] +id: dubious_for_taxon +name: dubious_for_taxon +def: "S dubious_for_taxon T if it is probably the case that no instances of S can be found in any instance of T." [https://orcid.org/0000-0002-6601-2165] +comment: this relation lacks a strong logical interpretation, but can be used in place of never_in_taxon where it is desirable to state that the definition of the class is too strict for the taxon under consideration, but placing a never_in_taxon link would result in a chain of inconsistencies that will take time to resolve. Example: metencephalon in teleost +xref: RO:0002174 +is_metadata_tag: true +is_class_level: true + +[Typedef] +id: editor_note +name: editor note +xref: IAO:0000116 +is_metadata_tag: true + +[Typedef] +id: ends +name: ends +def: "Relation between occurrents, shares an end boundary with." [Allen:starts, https://orcid.org/0000-0002-6601-2165, ZFS:finishes] +synonym: "finishes" EXACT [] +xref: RO:0002229 +is_a: part_of ! part of + +[Typedef] +id: ends_with +name: ends with +xref: RO:0002230 +is_transitive: true +is_a: has_part ! has part + +[Typedef] +id: example_of_usage +name: example of usage +xref: IAO:0000112 +is_metadata_tag: true + +[Typedef] +id: existence_ends_during +name: existence ends during +def: "Relation between continuant c and occurrent s, such that every instance of c ceases to exist during some s, if it does not die prematurely." [https://orcid.org/0000-0002-6601-2165] +synonym: "ceases_to_exist_during" EXACT [] +xref: RO:0002492 +is_a: existence_ends_during_or_before ! existence ends during or before +transitive_over: part_of ! part of + +[Typedef] +id: existence_ends_during_or_before +name: existence ends during or before +xref: RO:0002497 +holds_over_chain: part_of existence_ends_during_or_before +transitive_over: part_of ! part of +transitive_over: precedes ! precedes +transitive_over: simultaneous_with ! simultaneous_with + +[Typedef] +id: existence_ends_with +name: existence ends with +def: "Relation between continuant and occurrent, such that c ceases to exist at the end of p." [https://orcid.org/0000-0002-6601-2165] +xref: RO:0002493 +is_a: existence_ends_during ! existence ends during + +[Typedef] +id: existence_starts_and_ends_during +name: existence starts and ends during +xref: RO:0002491 +is_a: existence_ends_during ! existence ends during +is_a: existence_starts_during ! existence starts during + +[Typedef] +id: existence_starts_during +name: existence starts during +def: "Relation between continuant c and occurrent s, such that every instance of c comes into existing during some s." [https://orcid.org/0000-0002-6601-2165] +synonym: "begins_to_exist_during" EXACT [] +xref: RO:0002488 +is_a: existence_starts_during_or_after ! existence starts during or after +transitive_over: part_of ! part of + +[Typedef] +id: existence_starts_during_or_after +name: existence starts during or after +xref: RO:0002496 +holds_over_chain: developmentally_preceded_by existence_starts_during_or_after +holds_over_chain: part_of existence_starts_during_or_after +transitive_over: part_of ! part of +transitive_over: preceded_by ! preceded_by +transitive_over: simultaneous_with ! simultaneous_with + +[Typedef] +id: existence_starts_with +name: existence starts with +def: "Relation between continuant and occurrent, such that c comes into existence at the start of p." [https://orcid.org/0000-0002-6601-2165] +xref: RO:0002489 +is_a: existence_starts_during ! existence starts during + +[Typedef] +id: extends_fibers_into +name: extends_fibers_into +xref: extends_fibers_into +is_symmetric: true +is_a: connected_to ! connected to + +[Typedef] +id: external_comment +name: external_comment +def: "An alternate comment for a class taken unmodified from an external source. Note that obo format only allows a single comment for a class, and does not provide a structured means of adding provenance info." [https://orcid.org/0000-0002-6601-2165] +comment: This annotation property may be replaced with an annotation property from an external ontology such as IAO +xref: UBPROP:0000005 +is_metadata_tag: true + +[Typedef] +id: external_definition +name: external_definition +def: "An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class." [https://orcid.org/0000-0002-6601-2165] +comment: This annotation property may be replaced with an annotation property from an external ontology such as IAO +xref: UBPROP:0000001 +is_metadata_tag: true + +[Typedef] +id: external_ontology_notes +name: external_ontology_notes +def: "Notes on how similar or equivalent classes are represented in other ontologies." [https://orcid.org/0000-0002-6601-2165] +xref: UBPROP:0000012 +is_metadata_tag: true + +[Typedef] +id: filtered_through +name: filtered through +def: "Relationship between a fluid and a material entity, where the fluid is the output of a realization of a filtration role that inheres in the material entity." [] +comment: Relationship between a fluid and a filtration barrier, where the portion of fluid arises as a transformation of another portion of fluid on the other side of the barrier, with larger particles removed +xref: filtered_through + +[Typedef] +id: fma_set_term +name: fma_set_term +xref: UBPROP:0000202 +is_metadata_tag: true + +[Typedef] +id: foaf-homepage +name: homepage +xref: http://xmlns.com/foaf/0.1/homepage +is_metadata_tag: true + +[Typedef] +id: foaf-page +name: page +xref: http://xmlns.com/foaf/0.1/page +is_metadata_tag: true + +[Typedef] +id: function_notes +name: function_notes +def: "Notes on the evolved function of instances of this class." [https://orcid.org/0000-0002-6601-2165] +xref: UBPROP:0000009 +is_metadata_tag: true + +[Typedef] +id: functionally_related_to +name: functionally related to +xref: RO:0002328 + +[Typedef] +id: has_boundary +name: has boundary +xref: RO:0002002 + +[Typedef] +id: has_branching_part +name: has branching part +xref: RO:0002569 +is_transitive: true + +[Typedef] +id: has_component +name: has component +xref: RO:0002180 +is_a: has_part ! has part + +[Typedef] +id: has_developmental_contribution_from +name: has developmental contribution from +xref: RO:0002254 +holds_over_chain: has_part develops_from +is_transitive: true + +[Typedef] +id: has_fused_element +name: has_fused_element +def: "x has_fused_element y iff: there exists some z : x has_part z, z homologous_to y, and y is a distinct element, the boundary between x and z is largely fiat" [] +comment: A single bone in one species may correspond to the fusion of two or more bones found as distinct elements in another. For example, tibiofibula has_fused_element tibia. A has_fused_element B does not imply that A has_part some B, rather than A has_part some B', where B' is not a subtype of B (because B is a distinct element but B' is a regional part) but has some evolutionary relationship to B. +xref: RO:0002374 + +[Typedef] +id: has_member +name: has member +xref: RO:0002351 +is_a: has_part ! has part + +[Typedef] +id: has_muscle_antagonist +name: has_muscle_antagonist +def: "m1 has_muscle_antagonist m2 iff m1 acts in opposition to m2, and m2 is responsible for returning the structure to its initial position." [http://en.wikipedia.org/wiki/Antagonist_(muscle)] +xref: RO:0002568 + +[Typedef] +id: has_muscle_insertion +name: has_muscle_insertion +def: "m has_muscle_insertion s iff m is attaches_to s, and it is the case that when m contracts, s moves. Insertions are usually connections of muscle via tendon to bone." [http://en.wikipedia.org/wiki/Insertion_(anatomy)] +comment: The insertion is the point of attachment of a muscle that moves the most when the muscle shortens, or the most distal end of limb muscles +xref: RO:0002373 +is_a: attaches_to ! attaches_to + +[Typedef] +id: has_muscle_origin +name: has_muscle_origin +def: "m has_muscle_origin s iff m is attaches_to s, and it is the case that when m contracts, s does not move. The site of the origin tends to be more proximal and have greater mass than what the other end attaches to." [http://en.wikipedia.org/wiki/Insertion_(anatomy)#Muscles] +comment: The origin is the end of a muscle that attaches to the more fixed part of the skeleton, which is the proximal end in limb muscles +xref: RO:0002372 +is_a: attaches_to ! attaches_to + +[Typedef] +id: has_no_connections_with +name: has_no_connections_with +def: "A is has_no_connections_with B if there are no parts of A or B that have a connection with the other." [https://orcid.org/0000-0002-6601-2165] +xref: RO:0002475 +expand_assertion_to: "Class: EquivalentTo: (BFO_0000050 some ?X) and (RO_0002170 some (BFO_0000050 some ?Y))" [] +is_metadata_tag: true +is_class_level: true + +[Typedef] +id: has_part +name: has part +xref: BFO:0000051 +is_transitive: true + +[Typedef] +id: has_potential_to_develop_into +name: has potential to develop into +def: "x has the potential to develop into y iff x develops into y or if x is capable of developing into y" [] +xref: RO:0002387 + +[Typedef] +id: has_potential_to_developmentally_contribute_to +name: has potential to developmentally contribute to +def: "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y" [] +xref: RO:0002385 + +[Typedef] +id: has_potential_to_directly_develop_into +name: has potential to directly develop into +def: "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y" [] +xref: RO:0002388 + +[Typedef] +id: has_quality +name: has quality +xref: RO:0000086 +is_a: bearer_of ! bearer of + +[Typedef] +id: has_relational_adjective +name: has_relational_adjective +xref: UBPROP:0000007 +is_metadata_tag: true + +[Typedef] +id: has_skeleton +name: has skeleton +def: "A relation between a subdivision of an organism and the single subdivision of skeleton that provides structural support for that subdivision." [http://orcid.org/0000-0002-6601-2165] +synonym: "has sekeletal support" RELATED [] +synonym: "has supporting framework" RELATED [] +xref: RO:0002551 +domain: UBERON:0000475 ! organism subdivision +range: UBERON:0010912 ! subdivision of skeleton +is_a: has_part ! has part +inverse_of: skeleton_of ! skeleton of + +[Typedef] +id: has_start +name: has_start +xref: has_start + +[Typedef] +id: homologous_in +name: homologous_in +comment: Status: experimental +is_metadata_tag: true + +[Typedef] +id: homologous_to +name: homologous_to +xref: RO:0002158 + +[Typedef] +id: homology_notes +name: homology_notes +def: "Notes on the homology status of this class." [https://orcid.org/0000-0002-6601-2165] +comment: This annotation property may be replaced with an annotation property from an external ontology such as IAO +xref: UBPROP:0000003 +is_metadata_tag: true + +[Typedef] +id: immediate_transformation_of +name: immediate transformation of +synonym: "direct_transformation_of" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "immediately transforms from" EXACT [SIO:000658] +xref: RO:0002495 +is_a: transformation_of ! transformation of + +[Typedef] +id: immediately_anterior_to +name: immediately_anterior_to +xref: BSPO:0015009 +is_a: adjacent_to ! adjacent_to +is_a: anterior_to ! anterior_to + +[Typedef] +id: immediately_deep_to +name: immediately_deep_to +def: "This relation holds when both the deep_to and ajdacent_to relationship similarly hold." [http://orcid.org/0000-0002-6601-2165] +xref: BSPO:0001107 +is_a: adjacent_to ! adjacent_to +is_a: deep_to ! deep_to + +[Typedef] +id: immediately_posterior_to +name: immediately_posterior_to +xref: BSPO:0015012 +is_a: adjacent_to ! adjacent_to +is_a: posterior_to ! posterior_to + +[Typedef] +id: immediately_preceded_by +name: immediately_preceded_by +def: "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)" [] +synonym: "directly preceded by" EXACT [] +synonym: "is directly preceded by" EXACT [] +synonym: "is immediately preceded by" EXACT [SIO:000251] +synonym: "starts_at_end_of" EXACT [] +xref: RO:0002087 +is_a: preceded_by ! preceded_by + +[Typedef] +id: immediately_superficial_to +name: immediately_superficial_to +xref: BSPO:0015014 +is_a: adjacent_to ! adjacent_to +is_a: superficial_to ! superficial_to + +[Typedef] +id: implements_design_pattern +name: implements_design_pattern +xref: UBPROP:0000006 +is_metadata_tag: true + +[Typedef] +id: in_anterior_side_of +name: in_anterior_side_of +def: "X anterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the anterior portion." [BSPO:PATO_mtg_2009] +xref: BSPO:0000123 +is_a: part_of ! part of + +[Typedef] +id: in_central_side_of +name: in_central_side_of +def: "X in_central_side Y <=> if Y is subdivided into left and right portions around some median divisor, all parts of X are closer to the median divisor than the outermost lateral sides." [BSPO:cjm] +xref: in_central_side_of +is_a: part_of ! part of + +[Typedef] +id: in_deep_part_of +name: in_deep_part_of +def: "X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the deep portion." [http://orcid.org/0000-0002-6601-2165] +xref: BSPO:0001101 +is_a: part_of ! part of + +[Typedef] +id: in_distal_side_of +name: in_distal_side_of +def: "X distal_side_of Y <=> if Y is subdivided into distal and proximal portions, X is part_of the distal portion." [BSPO:PATO_mtg_2009] +xref: BSPO:0000125 +is_a: part_of ! part of + +[Typedef] +id: in_dorsal_side_of +name: in_dorsal_side_of +xref: BSPO:0015101 +is_a: part_of ! part of + +[Typedef] +id: in_innermost_side_of +name: in_innermost_side_of +xref: in_innermost_side_of +is_a: in_lateral_side_of ! in_lateral_side_of + +[Typedef] +id: in_lateral_side_of +name: in_lateral_side_of +def: "X in_lateral_side_of Y <=> if X is in_left_side_of Y or X is in_right_side_of Y. X is often, but not always a paired structure" [https://orcid.org/0000-0002-6601-2165] +xref: BSPO:0000126 +is_a: part_of ! part of +disjoint_from: in_central_side_of ! in_central_side_of + +[Typedef] +id: in_left_side_of +name: in_left_side_of +def: "X in_left_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the left portion." [BSPO:PATO_mtg_2009] +xref: BSPO:0000120 +is_a: in_lateral_side_of ! in_lateral_side_of + +[Typedef] +id: in_outermost_side_of +name: in_outermost_side_of +xref: in_outermost_side_of +is_a: in_lateral_side_of ! in_lateral_side_of + +[Typedef] +id: in_posterior_side_of +name: in_posterior_side_of +def: "X posterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the posterior portion." [BSPO:PATO_mtg_2009] +xref: BSPO:0000122 +is_a: part_of ! part of + +[Typedef] +id: in_proximal_side_of +name: in_proximal_side_of +def: "X proximal_side_of Y <=> if Y is subdivided into distal and proximal portions, X is part_of the proximal portion." [BSPO:PATO_mtg_2009] +xref: BSPO:0000124 +is_a: part_of ! part of +inverse_of: in_distal_side_of ! in_distal_side_of + +[Typedef] +id: in_right_side_of +name: in_right_side_of +def: "X in_right_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the right portion." [BSPO:PATO_mtg_2009] +xref: BSPO:0000121 +is_a: in_lateral_side_of ! in_lateral_side_of + +[Typedef] +id: in_superficial_part_of +name: in_superficial_part_of +def: "X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the superficial portion." [http://orcid.org/0000-0002-6601-2165] +xref: BSPO:0001100 +is_a: part_of ! part of + +[Typedef] +id: in_taxon +name: in taxon +xref: RO:0002162 +holds_over_chain: attaches_to in_taxon +holds_over_chain: connected_to in_taxon +holds_over_chain: connects in_taxon +holds_over_chain: continuous_with in_taxon +holds_over_chain: developmentally_induced_by in_taxon +holds_over_chain: develops_from in_taxon +holds_over_chain: existence_ends_during in_taxon +holds_over_chain: existence_starts_during in_taxon +holds_over_chain: extends_fibers_into in_taxon +holds_over_chain: has_developmental_contribution_from in_taxon +holds_over_chain: has_potential_to_develop_into in_taxon +holds_over_chain: innervated_by in_taxon +holds_over_chain: overlaps in_taxon +holds_over_chain: part_of in_taxon +holds_over_chain: produced_by in_taxon +holds_over_chain: produces in_taxon +holds_over_chain: supplies in_taxon + +[Typedef] +id: in_ventral_side_of +name: in_ventral_side_of +xref: BSPO:0015102 +is_a: part_of ! part of + +[Typedef] +id: indirectly_supplies +name: indirectly_supplies +def: "a indirectly_supplies s iff a has a branch and the branch supplies or indirectly supplies s" [] +xref: indirectly_supplies +holds_over_chain: has_branching_part indirectly_supplies +holds_over_chain: has_branching_part supplies +is_transitive: true + +[Typedef] +id: innervated_by +name: innervated_by +comment: http://code.google.com/p/obo-relations/issues/detail?id=6 +synonym: "nerve supply" EXACT [FMA:85999] +xref: RO:0002005 +inverse_of: innervates ! innervates +transitive_over: branching_part_of ! branching_part_of + +[Typedef] +id: innervates +name: innervates +comment: http://code.google.com/p/obo-relations/issues/detail?id=6 +xref: RO:0002134 +transitive_over: part_of ! part of + +[Typedef] +id: input_of +name: input of +xref: RO:0002352 +is_a: functionally_related_to ! functionally related to + +[Typedef] +id: intersects_midsagittal_plane_of +name: intersects_midsagittal_plane_of +def: "X intersects_median_plane of iff X crosses the midine plane of Y." [] +xref: BSPO:0005001 +is_a: part_of ! part of + +[Typedef] +id: is_count_of +name: is count of +xref: UBPROP:0000100 +is_metadata_tag: true + +[Typedef] +id: layer_part_of +name: layer part of +xref: layer_part_of +is_a: part_of ! part of + +[Typedef] +id: located_in +name: located_in +xref: RO:0001025 + +[Typedef] +id: location_notes +name: location_notes +def: "Notes on the location, position or part-parents of instances of this class." [https://orcid.org/0000-0002-6601-2165] +xref: UBPROP:0000015 +is_metadata_tag: true + +[Typedef] +id: location_of +name: location_of +xref: RO:0001015 + +[Typedef] +id: lumen_of +name: lumen of +xref: RO:0002571 +is_a: part_of ! part of + +[Typedef] +id: luminal_space_of +name: luminal space of +xref: RO:0002572 +is_a: part_of ! part of + +[Typedef] +id: member_of +name: member of +xref: RO:0002350 +is_a: part_of ! part of +inverse_of: has_member ! has member + +[Typedef] +id: mutually_spatially_disjoint_with +name: mutually_spatially_disjoint_with +xref: RO:0002171 +expand_assertion_to: "Class: EquivalentTo: (BFO_0000050 some ?X) and (BFO_0000050 some ?Y)" [] +is_metadata_tag: true +is_class_level: true + +[Typedef] +id: never_in_taxon +name: never_in_taxon +def: "S never_in_taxon T iff: S SubClassOf in_taxon only not T" [http://www.ncbi.nlm.nih.gov/pubmed/20973947] +xref: RO:0002161 +expand_assertion_to: "Class: EquivalentTo: ?X and (RO_0002162 some ?Y)" [] +is_metadata_tag: true +is_class_level: true + +[Typedef] +id: only_in_taxon +name: only_in_taxon +def: "S only_in_taxon T iff: S SubClassOf in_taxon only T" [http://www.ncbi.nlm.nih.gov/pubmed/20973947] +xref: RO:0002160 +is_a: in_taxon ! in taxon + +[Typedef] +id: oral_to +name: oral_to +def: "nearer to the oral opening of the organism, on the oral-aboral axis." [BSPO:cjm] +xref: BSPO:0015201 +is_transitive: true + +[Typedef] +id: output_of +name: output of +xref: RO:0002353 +is_a: functionally_related_to ! functionally related to + +[Typedef] +id: overlaps +name: overlaps +def: "A overlaps B if they share some part in common." [] +xref: RO:0002131 +expand_expression_to: "BFO_0000051 some (BFO_0000050 some ?Y)" [] + +[Typedef] +id: paired_appendage_number +name: paired_appendage number +def: "x paired_appendage_number N if and only if (i) x is a paired_appendage, and (ii) x is paired_appendage number N in a series of paired_appendages repeated along an anterior-posterior axis, with paired_appendage_number 1 being the anteriormost paired_appendage. In vertebrates, this is the pectoral appendage" [https://orcid.org/0000-0002-6601-2165] +xref: UBPROP:0000109 +is_metadata_tag: true + +[Typedef] +id: part_of +name: part of +xref: BFO:0000050 +is_transitive: true +inverse_of: has_part ! has part + +[Typedef] +id: part_of_structure_that_is_capable_of +name: part of structure that is capable of +xref: RO:0002329 +holds_over_chain: part_of capable_of +is_a: functionally_related_to ! functionally related to + +[Typedef] +id: participates_in +name: participates in +xref: RO:0000056 + +[Typedef] +id: phalanx_number +name: phalanx number +def: "x phalanx_number N if and only if (i) x is a phalanx, and (ii) x is phalanx number N in a series of phalanges repeated along an prixomo-distal axis, with phalanx_number 1 being the proximalmost phalanx. Note that in humans, the distalmost phalanx has phlanax_number 3, except in ray_number 1, where the distalmost has phalanx_number 2" [http://en.wikipedia.org/wiki/Phalanx_bone#Phalangeal_formula, https://orcid.org/0000-0002-6601-2165] +comment: Most land mammals including humans have a 2-3-3-3-3 formula in both the hands (or paws) and feet. Primitive reptiles typically had the formula 2-3-4-4-5, and this pattern, with some modification, remained in many later reptiles and in the mammal-like reptiles. The phalangeal formula in the flippers of cetaceans (marine mammals) is 2-12-8-1 +xref: UBPROP:0000105 +is_metadata_tag: true + +[Typedef] +id: pharyngeal_arch_number +name: pharyngeal arch number +def: "x pharyngeal_arch_number N if and only if (i) x is a pharyngeal arch, and (ii) x is ancestrally pharyngeal arch number N in a series of pharyngeal arches repeated along a antero-posterior axis, with arch_number 1 being the mandibular arch." [https://orcid.org/0000-0002-6601-2165] +xref: UBPROP:0000103 +is_metadata_tag: true + +[Typedef] +id: postaxial_to +name: postaxial_to +def: "x preaxial_to y iff x is further along the preaxial-postaxial axis than y, towards the postaxial side." [http://medical-dictionary.thefreedictionary.com/postaxial] +synonym: "posterior_to (developmentally)" RELATED [MA:th] +xref: BSPO:0001114 +is_transitive: true + +[Typedef] +id: postaxialmost_part_of +name: postaxialmost_part_of +xref: BSPO:0001115 +is_a: part_of ! part of + +[Typedef] +id: posterior_to +name: posterior_to +def: "x posterior_to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail." [http://orcid.org/0000-0002-6601-2165] +synonym: "caudal_to" NARROW [] +xref: BSPO:0000099 +is_transitive: true + +[Typedef] +id: posteriorly_connected_to +name: posteriorly connected to +def: "x posteriorly_connected_to y iff the posterior part of x is connected to y. i.e. x connected_to y and x anterior_to y." [http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern] +xref: posteriorly_connected_to +is_a: anterior_to ! anterior_to +is_a: connected_to ! connected to + +[Typedef] +id: preaxial_to +name: preaxial_to +def: "x preaxial_to y iff x is further along the preaxial-postaxial axis than y, towards the front." [http://medical-dictionary.thefreedictionary.com/preaxial] +synonym: "anterior_to (developmentally)" RELATED [MA:th] +synonym: "lateral (radial) to" RELATED [] +synonym: "medial (tibial) to" RELATED [] +xref: BSPO:1000000 +is_transitive: true + +[Typedef] +id: preaxialmost_part_of +name: preaxialmost_part_of +xref: BSPO:0001113 +is_a: part_of ! part of + +[Typedef] +id: preceded_by +name: preceded_by +def: "X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X)" [] +synonym: "is preceded by" EXACT [SIO:000249] +synonym: "takes place after" EXACT [Allen:precedes] +xref: BFO:0000062 +is_transitive: true + +[Typedef] +id: precedes +name: precedes +xref: BFO:0000063 +is_transitive: true + +[Typedef] +id: preceding_element_is +name: preceding element is +def: "A property used in conjunction with repeated_element_number to indicate an axis and directionality along that axis. If P preceding_element_is R, and P is_count_of S, and X P N, and X' P N+1, then it follows that every X R some X', and the class expression [S and R some X' and inv(R) some X] is empty (i.e. X is followed by X', with no intermediates)" [https://orcid.org/0000-0002-6601-2165] +xref: UBPROP:0000101 +is_metadata_tag: true + +[Typedef] +id: present_in_taxon +name: present_in_taxon +def: "S present_in_taxon T if some instance of T has some S. This does not means that all instances of T have an S - it may only be certain life stages or sexes that have S" [https://orcid.org/0000-0002-6601-2165] +synonym: "applicable for taxon" EXACT [] +xref: RO:0002175 +is_metadata_tag: true +is_class_level: true + +[Typedef] +id: produced_by +name: produced_by +xref: RO:0003001 + +[Typedef] +id: produces +name: produces +xref: RO:0003000 + +[Typedef] +id: protects +name: protects +xref: protects + +[Typedef] +id: provenance_notes +name: obsolete provenance_notes +xref: UBPROP:0000004 +is_obsolete: true + +[Typedef] +id: proximal_to +name: proximal_to +def: "x proximal_to y iff x is closer to the point of attachment with the body than y." [http://orcid.org/0000-0002-6601-2165] +xref: BSPO:0000100 + +[Typedef] +id: proximally_connected_to +name: proximally connected to +def: "x proximally_connected_to y iff the proximal part of x is connected to y. i.e. x connected_to y and x distal_to y." [http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern] +xref: proximally_connected_to +is_a: connected_to ! connected to +is_a: distal_to ! distal_to +is_a: transitively_proximally_connected_to ! transitively proximally connected to + +[Typedef] +id: proximalmost_part_of +name: proximalmost_part_of +def: "X proximalmost_part_of Y <=> X is part_of Y and X is adjacent_to the proximal boundary of Y" [https://orcid.org/0000-0002-6601-2165] +xref: BSPO:0001106 +is_a: in_proximal_side_of ! in_proximal_side_of + +[Typedef] +id: ray_number +name: ray number +def: "x ray_number N if and only if (i) x is a ray, and (ii) x is ancestrally associated with ray number N in a series of phalanges repeated along a radio-ulnar or equivalent axis, with ray_number 1 being the anteriormost ray." [https://orcid.org/0000-0002-6601-2165] +comment: The correct terminology is yet to be established; in tetrapods 'ray' might mean the mereological sum of the phalanges of a manual digit plus a metatarsal bone (or equivalent for hindlimb) +xref: UBPROP:0000104 +is_metadata_tag: true + +[Typedef] +id: repeated_element_number +name: repeated element number +def: "A property used to indicate the position of an element where that element is of a type that is serially repeated linearly along some axis for which a total ordering exists. The ordering may represent an ancestral condition" [https://orcid.org/0000-0002-6601-2165] +comment: The range is currently non-negative integer +xref: UBPROP:0000102 +is_metadata_tag: true + +[Typedef] +id: rhombomere_number +name: rhombomere number +def: "x rhombomere_number N if and only if (i) x is a rhombomere, and (ii) x is rhombomere number N in a series of rhombomeres repeated along an anterior-posterior axis, with rhombomere_number 1 being the anteriormost rhombomere." [https://orcid.org/0000-0002-6601-2165] +xref: UBPROP:0000111 +is_metadata_tag: true + +[Typedef] +id: rib_number +name: rib number +def: "x rib_number N if and only if (i) x is a rib, and (ii) x is rib number N in a series of ribs repeated along an anterior-posterior axis, with rib_number 1 being the anteriormost rib. Note that this property counts ribs, *not* the adjoining vertebrae." [https://orcid.org/0000-0002-6601-2165] +xref: UBPROP:0000106 +is_metadata_tag: true + +[Typedef] +id: seeAlso +name: see also +xref: seeAlso +is_metadata_tag: true + +[Typedef] +id: serially_homologous_to +name: serially_homologous_to +xref: RO:0002159 + +[Typedef] +id: sexually_homologous_to +name: sexually_homologous_to +xref: sexually_homologous_to +is_a: homologous_to ! homologous_to + +[Typedef] +id: simultaneous_with +name: simultaneous_with +def: "Relation between occurrents, shares start and end boundaries." [Allen:is_equal_to, https://orcid.org/0000-0002-6601-2165] +synonym: "coincides_with" EXACT [] +synonym: "is_equal_to" EXACT [] +xref: RO:0002082 +is_a: ends ! ends +is_a: starts ! starts + +[Typedef] +id: site_of +name: site_of +def: "c site_of p if c is the bearer of a disposition that is realized by a process that has p as part" [] +synonym: "capable_of_has_part" RELATED [] +xref: site_of + +[Typedef] +id: skeleton_of +name: skeleton of +xref: RO:0002576 +is_a: part_of ! part of + +[Typedef] +id: somite_number +name: somite number +def: "x somite_number N if and only if (i) x is a somite, and (ii) x is somite number N in a series of somites repeated along an anterior-posterior axis, with somite_number 1 being the anteriormost somite." [https://github.com/obophenotype/uberon/issues/100, https://orcid.org/0000-0002-6601-2165] +xref: UBPROP:0000108 +is_metadata_tag: true + +[Typedef] +id: source_atlas +name: source atlas +xref: UBPROP:0000201 +is_metadata_tag: true + +[Typedef] +id: starts +name: starts +def: "Relation between occurrents, shares a start boundary with." [Allen:starts, https://orcid.org/0000-0002-6601-2165] +xref: RO:0002223 +is_a: part_of ! part of +inverse_of: starts_with ! starts with + +[Typedef] +id: starts_with +name: starts with +xref: RO:0002224 +is_transitive: true +is_a: has_part ! has part + +[Typedef] +id: structure_notes +name: structure_notes +def: "Notes on the structure, composition or histology of instances of this class." [https://orcid.org/0000-0002-6601-2165] +xref: UBPROP:0000010 +is_metadata_tag: true + +[Typedef] +id: subdivision_of +name: subdivision of +comment: placeholder relation. X = 'subdivision of A' and subdivision_of some B means that X is the mereological sum of A and B +xref: subdivision_of + +[Typedef] +id: superficial_to +name: superficial_to +def: "Near the outer surface of the organism. Thus, skin is superficial to the muscle layer." [http://orcid.org/0000-0002-6601-2165] +xref: BSPO:0000108 + +[Typedef] +id: supplies +name: supplies +def: "relation between an artery and the structure is supplies with blood." [] +comment: source: FMA +synonym: "arterial supply of" EXACT [FMA:86003] +xref: RO:0002178 +domain: UBERON:0001637 ! artery +is_a: connected_to ! connected to + +[Typedef] +id: surrounded_by +name: surrounded_by +def: "x surrounded_by y iff: x is adjacent to y and for every region r adjacent to x, r overlaps y" [https://orcid.org/0000-0002-6601-2165] +xref: RO:0002219 +inverse_of: surrounds ! surrounds + +[Typedef] +id: surrounds +name: surrounds +def: "inverse of surrounded_by" [https://orcid.org/0000-0002-6601-2165] +xref: RO:0002221 + +[Typedef] +id: synapsed_by +name: synapsed by +def: "Relation between an anatomical structure (including cells) and a neuron that chemically synapses to it." [] +xref: synapsed_by + +[Typedef] +id: taxon_notes +name: taxon_notes +def: "Notes on the how instances of this class vary across species." [https://orcid.org/0000-0002-6601-2165] +xref: UBPROP:0000008 +is_metadata_tag: true + +[Typedef] +id: terminology_notes +name: terminology_notes +def: "Notes on how lexical conventions regarding this class, in particular any issues that may arise due to homonyny or synonymy." [https://orcid.org/0000-0002-6601-2165] +xref: UBPROP:0000013 +is_metadata_tag: true + +[Typedef] +id: tooth_number +name: tooth number +def: "x tooth_number N if and only if (i) x is a tooth, and (ii) x is ancestrally tooth number N in a series of teeth repeated along an anterior-posterior axis, typically on the lateral side of a structure such as a jaw, with tooth_number 1 being the anteriormost. Note that this count refers to the total number of teeth starting from the first, regardless of the type of tooth. If sub-systems are required for numbering within a series of teeth of the same type, consider a subproperty. For example, in a human, maxillary canine = tooth 3 of upper jaw = canine_tooth 1 of upper jaw" [] +xref: UBPROP:0000112 +is_metadata_tag: true + +[Typedef] +id: transformation_of +name: transformation of +synonym: "transforms from" EXACT [SIO:000657] +xref: RO:0002494 +is_transitive: true +is_a: develops_from ! develops_from + +[Typedef] +id: transitively_anteriorly_connected_to +name: transitively anteriorly connected to +def: "." [http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern] +xref: transitively_anteriorly_connected_to +is_transitive: true + +[Typedef] +id: transitively_connected_to +name: transitively_connected to +xref: transitively_connected_to +is_transitive: true + +[Typedef] +id: transitively_distally_connected_to +name: transitively distally connected to +def: "." [http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern] +xref: transitively_distally_connected_to +is_transitive: true + +[Typedef] +id: transitively_proximally_connected_to +name: transitively proximally connected to +def: "." [http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern] +xref: transitively_proximally_connected_to +is_transitive: true + +[Typedef] +id: tributary_of +name: tributary_of +synonym: "drains into" RELATED [dbpowl:drainsTo] +xref: RO:0002376 + +[Typedef] +id: trunk_part_of +name: trunk_part_of +xref: trunk_part_of +is_a: part_of ! part of + +[Typedef] +id: ventral_to +name: ventral_to +def: "x ventral_to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly)." [http://orcid.org/0000-0002-6601-2165] +xref: BSPO:0000102 +is_transitive: true + +[Typedef] +id: vertebra_number +name: vertebra number +def: "x vertebra_number N if and only if (i) x is a vertebra, and (ii) x is vertebra number N in a series of vertebras repeated along an anterior-posterior axis, with vertebra_number 1 being the anteriormost vertebra (also known as the atlas)." [https://orcid.org/0000-0002-6601-2165] +xref: UBPROP:0000107 +is_metadata_tag: true + From 6e821f7e512362ed22e0840d067a7b7700be09ff Mon Sep 17 00:00:00 2001 From: Natalie Thurlby Date: Sun, 28 Mar 2021 19:01:30 +0100 Subject: [PATCH 14/21] updating sphinx ext --- docs/_ext/versioned-tagged-docs.py | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/docs/_ext/versioned-tagged-docs.py b/docs/_ext/versioned-tagged-docs.py index 9cee5c0..81526aa 100644 --- a/docs/_ext/versioned-tagged-docs.py +++ b/docs/_ext/versioned-tagged-docs.py @@ -16,7 +16,12 @@ def copy_to_version(app, exception): # Get branch name, version number, and tag git_root = os.path.dirname(os.path.dirname(os.path.dirname(os.path.abspath(app.outdir)))) repo = git.Repo(git_root) - branch_name = repo.active_branch.name + + try: + branch_name = repo.active_branch.name + except: + commit = repo.commit().hexsha + branch_name = repo.git.branch('--contains', commit).strip('* ') ns = {} ver_path = convert_path(os.path.join(git_root, 'ontolopy/version.py')) From 27e3036f54b6c21ceff8a303d467614cf6dc8943 Mon Sep 17 00:00:00 2001 From: Natalie Thurlby Date: Sun, 28 Mar 2021 19:25:51 +0100 Subject: [PATCH 15/21] Updated changelog --- docs/contents/changelog.md | 13 +++++++++---- ontolopy/version.py | 2 +- 2 files changed, 10 insertions(+), 5 deletions(-) diff --git a/docs/contents/changelog.md b/docs/contents/changelog.md index 24b42cd..77ad63a 100644 --- a/docs/contents/changelog.md +++ b/docs/contents/changelog.md @@ -2,14 +2,19 @@ [//]: # (TODO: Link to GitHub releases) -## 1.0.0-beta -- Renamed module to Ontolopy. +## [1.0.1-beta](https://github.com/metawards/MetaWards/releases/tag/1.0.1-beta) +- Got documentation on gh-pages [[#2](https://github.com/NatalieThurlby/ontolopy/issues/2)] +- Wrote sphinx extension to be able to access versioned docs (not yet easy to navigate) +- Removed TravisCI for testing, and added GitHub Actions for testing, deploying docs, and packaging [[#1](https://github.com/NatalieThurlby/ontolopy/issues/1)]. + +## Ontolopy 1.0.0-beta +- Renamed module to Ontolopy [[#4](https://github.com/NatalieThurlby/ontolopy/issues/4)] - Refactored `Obo()` and `Relations()` class. - `Obo()` now extends `dict`. - Added unit tests for `ontolopy.validate_term()` and `ontolopy.read_line_obo()`. -- Added Sphinx documentation, with PyData Sphinx theme. +- Added basic contents for Sphinx documentation [[#2](https://github.com/NatalieThurlby/ontolopy/issues/2)], with PyData Sphinx theme. -## 0.1.0 +## uberon-py 0.1.0 - Download `.obo` files: ["sensory-minimal"](http://ontologies.berkeleybop.org/uberon/subsets/sensory-minimal.obo), ["uberon-extended"](http://purl.obolibrary.org/obo/uberon/ext.obo) and ["uberon-basic"](http://purl.obolibrary.org/obo/uberon.obo) - Load `.obo` files: added `Obo()` class. - Find relations in ontology terms: added `Relations()` class. diff --git a/ontolopy/version.py b/ontolopy/version.py index 2c5adde..36acab2 100644 --- a/ontolopy/version.py +++ b/ontolopy/version.py @@ -1 +1 @@ -__version__ = "1.0.0-beta" \ No newline at end of file +__version__ = "1.0.1-beta" \ No newline at end of file From 9e2f27a0afcfd369d108db81d0be93e42e7c03c7 Mon Sep 17 00:00:00 2001 From: Natalie Thurlby Date: Sun, 28 Mar 2021 19:45:44 +0100 Subject: [PATCH 16/21] Working on fix for PR problem --- docs/_ext/versioned-tagged-docs.py | 2 ++ 1 file changed, 2 insertions(+) diff --git a/docs/_ext/versioned-tagged-docs.py b/docs/_ext/versioned-tagged-docs.py index 81526aa..407952f 100644 --- a/docs/_ext/versioned-tagged-docs.py +++ b/docs/_ext/versioned-tagged-docs.py @@ -21,7 +21,9 @@ def copy_to_version(app, exception): branch_name = repo.active_branch.name except: commit = repo.commit().hexsha + tree = commit.tree branch_name = repo.git.branch('--contains', commit).strip('* ') + logging.warning(f'Detached HEAD state, commit: {commit} on branch name {branch_name} tree {tree}.') ns = {} ver_path = convert_path(os.path.join(git_root, 'ontolopy/version.py')) From d387b7f8e5fe47e3c240fd45d344e6b0235123a8 Mon Sep 17 00:00:00 2001 From: Natalie Thurlby Date: Sun, 28 Mar 2021 19:47:44 +0100 Subject: [PATCH 17/21] typo --- docs/_ext/versioned-tagged-docs.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/docs/_ext/versioned-tagged-docs.py b/docs/_ext/versioned-tagged-docs.py index 407952f..1da4c28 100644 --- a/docs/_ext/versioned-tagged-docs.py +++ b/docs/_ext/versioned-tagged-docs.py @@ -20,10 +20,10 @@ def copy_to_version(app, exception): try: branch_name = repo.active_branch.name except: - commit = repo.commit().hexsha + commit = repo.commit() tree = commit.tree - branch_name = repo.git.branch('--contains', commit).strip('* ') - logging.warning(f'Detached HEAD state, commit: {commit} on branch name {branch_name} tree {tree}.') + branch_name = repo.git.branch('--contains', commit.hexsha).strip('* ') + logging.warning(f'Detached HEAD state, commit: {commit.hexsha} on branch name {branch_name} tree {tree}.') ns = {} ver_path = convert_path(os.path.join(git_root, 'ontolopy/version.py')) From ffb7de931d24bb38667b881dea9b8db074c4f61e Mon Sep 17 00:00:00 2001 From: Natalie Thurlby Date: Sun, 28 Mar 2021 20:22:16 +0100 Subject: [PATCH 18/21] Checking PRs --- docs/_ext/versioned-tagged-docs.py | 13 +++++++++++-- requirements-dev.txt | 3 ++- 2 files changed, 13 insertions(+), 3 deletions(-) diff --git a/docs/_ext/versioned-tagged-docs.py b/docs/_ext/versioned-tagged-docs.py index 1da4c28..b060106 100644 --- a/docs/_ext/versioned-tagged-docs.py +++ b/docs/_ext/versioned-tagged-docs.py @@ -1,9 +1,10 @@ import git +from github import Github from distutils.util import convert_path import logging import os import shutil - +import re def copy_to_version(app, exception): """ @@ -20,10 +21,18 @@ def copy_to_version(app, exception): try: branch_name = repo.active_branch.name except: + # TODO: Decide if I would like to rebuild the site during PRs commit = repo.commit() tree = commit.tree branch_name = repo.git.branch('--contains', commit.hexsha).strip('* ') - logging.warning(f'Detached HEAD state, commit: {commit.hexsha} on branch name {branch_name} tree {tree}.') + number = re.search(r'pull/(\d+)/', branch_name) + gh = Github() + gh_repo = gh.get_repo("PyGithub/PyGithub") + pr = gh_repo.get_pull(int(number)) + from_ = pr.head.label.split(':')[1] + to_ = pr.base.label.split(':')[1] + + logging.warning(f'Detached HEAD state, detached PR from {from_} to {to_}.') ns = {} ver_path = convert_path(os.path.join(git_root, 'ontolopy/version.py')) diff --git a/requirements-dev.txt b/requirements-dev.txt index 78c85b3..59a32c9 100644 --- a/requirements-dev.txt +++ b/requirements-dev.txt @@ -4,4 +4,5 @@ pytest pydata-sphinx-theme twine gitpython -myst-nb \ No newline at end of file +myst-nb +pygithub \ No newline at end of file From 02e3945c101e2fc0ce105330616a5a8d5b659509 Mon Sep 17 00:00:00 2001 From: Natalie Thurlby Date: Sun, 28 Mar 2021 20:24:51 +0100 Subject: [PATCH 19/21] number returned regex object not number --- docs/_ext/versioned-tagged-docs.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/_ext/versioned-tagged-docs.py b/docs/_ext/versioned-tagged-docs.py index b060106..2cae6e4 100644 --- a/docs/_ext/versioned-tagged-docs.py +++ b/docs/_ext/versioned-tagged-docs.py @@ -25,7 +25,7 @@ def copy_to_version(app, exception): commit = repo.commit() tree = commit.tree branch_name = repo.git.branch('--contains', commit.hexsha).strip('* ') - number = re.search(r'pull/(\d+)/', branch_name) + number = re.search(r'pull/(\d+)/', branch_name).group(1) gh = Github() gh_repo = gh.get_repo("PyGithub/PyGithub") pr = gh_repo.get_pull(int(number)) From e398be78622c06be5601c707d6b9128899af3826 Mon Sep 17 00:00:00 2001 From: Natalie Thurlby Date: Sun, 28 Mar 2021 20:28:32 +0100 Subject: [PATCH 20/21] Typo --- docs/_ext/versioned-tagged-docs.py | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/docs/_ext/versioned-tagged-docs.py b/docs/_ext/versioned-tagged-docs.py index 2cae6e4..1aa5072 100644 --- a/docs/_ext/versioned-tagged-docs.py +++ b/docs/_ext/versioned-tagged-docs.py @@ -23,12 +23,12 @@ def copy_to_version(app, exception): except: # TODO: Decide if I would like to rebuild the site during PRs commit = repo.commit() - tree = commit.tree branch_name = repo.git.branch('--contains', commit.hexsha).strip('* ') - number = re.search(r'pull/(\d+)/', branch_name).group(1) + number = int(re.search(r'pull/(\d+)/', branch_name).group(1)) + gh = Github() - gh_repo = gh.get_repo("PyGithub/PyGithub") - pr = gh_repo.get_pull(int(number)) + gh_repo = gh.get_repo("NatalieThurlby/Ontolopy") + pr = gh_repo.get_pull(number) from_ = pr.head.label.split(':')[1] to_ = pr.base.label.split(':')[1] From 1e3c45fb8121e04b9b33c1f8a9b3d1544332ee0b Mon Sep 17 00:00:00 2001 From: Natalie Thurlby Date: Mon, 29 Mar 2021 09:54:32 +0100 Subject: [PATCH 21/21] Add from_ to build versioned docs --- docs/_ext/versioned-tagged-docs.py | 2 ++ 1 file changed, 2 insertions(+) diff --git a/docs/_ext/versioned-tagged-docs.py b/docs/_ext/versioned-tagged-docs.py index 1aa5072..9d6863e 100644 --- a/docs/_ext/versioned-tagged-docs.py +++ b/docs/_ext/versioned-tagged-docs.py @@ -24,6 +24,7 @@ def copy_to_version(app, exception): # TODO: Decide if I would like to rebuild the site during PRs commit = repo.commit() branch_name = repo.git.branch('--contains', commit.hexsha).strip('* ') + logging.warning(f'Branch name: {branch_name}') number = int(re.search(r'pull/(\d+)/', branch_name).group(1)) gh = Github() @@ -33,6 +34,7 @@ def copy_to_version(app, exception): to_ = pr.base.label.split(':')[1] logging.warning(f'Detached HEAD state, detached PR from {from_} to {to_}.') + branch_name = from_ ns = {} ver_path = convert_path(os.path.join(git_root, 'ontolopy/version.py'))