diff --git a/DESCRIPTION b/DESCRIPTION index e4a397fd..4fb50f4e 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -2,7 +2,7 @@ Package: DatabaseConnector Type: Package Title: Connecting to Various Database Platforms Version: 6.3.1 -Date: 2023-11-08 +Date: 2023-11-28 Authors@R: c( person("Martijn", "Schuemie", email = "schuemie@ohdsi.org", role = c("aut", "cre")), person("Marc", "Suchard", role = c("aut")), diff --git a/cran-comments.md b/cran-comments.md index 123fd033..9ffc0005 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,4 +1,4 @@ -This update includes 3 changes and 1 bugfixes. (see NEWS.md). +This update includes 2 bugfixes. (see NEWS.md). --- diff --git a/docs/404.html b/docs/404.html index da23bf91..42a9db2f 100644 --- a/docs/404.html +++ b/docs/404.html @@ -32,7 +32,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/articles/Connecting.html b/docs/articles/Connecting.html index 830a00b6..0316882a 100644 --- a/docs/articles/Connecting.html +++ b/docs/articles/Connecting.html @@ -33,7 +33,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 @@ -91,7 +91,7 @@

Connecting to a database

Martijn J. Schuemie

-

2023-11-08

+

2023-11-28

Source: vignettes/Connecting.Rmd @@ -267,7 +267,7 @@

Connecting to a SQLite databaseinsertTable(connection = conn, tableName = "cars", data = cars) -
## Inserting data took 0.0571 secs
+
## Inserting data took 0.0251 secs
 querySql(conn, "SELECT COUNT(*) FROM main.cars;")
##   COUNT(*)
diff --git a/docs/articles/DbiAndDbplyr.html b/docs/articles/DbiAndDbplyr.html
index f80c8cdb..d4126244 100644
--- a/docs/articles/DbiAndDbplyr.html
+++ b/docs/articles/DbiAndDbplyr.html
@@ -33,7 +33,7 @@
       
       
         DatabaseConnector
-        6.3.0
+        6.3.1
       
     
 
@@ -92,7 +92,7 @@ 

Using DatabaseConnector through DBI and

Martijn J. Schuemie

-

2023-11-08

+

2023-11-28

Source: vignettes/DbiAndDbplyr.Rmd diff --git a/docs/articles/Querying.html b/docs/articles/Querying.html index 89701c20..09ec584a 100644 --- a/docs/articles/Querying.html +++ b/docs/articles/Querying.html @@ -33,7 +33,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 @@ -91,7 +91,7 @@

Querying a database

Martijn J. Schuemie

-

2023-11-08

+

2023-11-28

Source: vignettes/Querying.Rmd diff --git a/docs/articles/index.html b/docs/articles/index.html index d7b8e32b..39046259 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/authors.html b/docs/authors.html index 70d79724..0fd500a5 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/index.html b/docs/index.html index 4f2f28cf..855d2b1a 100644 --- a/docs/index.html +++ b/docs/index.html @@ -35,7 +35,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/news/index.html b/docs/news/index.html index a12defec..b28af0fa 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 @@ -67,7 +67,13 @@

Changelog

- + +

Bugfixes:

+
  1. Fixed dbFetch() for DBI drivers, no longer ignoring n argument.

  2. +
  3. Fix bulk import for Postgres on MacOs.

  4. +
+
+

Changes:

  1. On Snowflake always using QUOTED_IDENTIFIERS_IGNORE_CASE=TRUE to avoid name mismatches when using quotes.

  2. Updated Redshift drivers.

  3. diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index b0a3c684..0ad0b348 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -5,5 +5,5 @@ articles: Connecting: Connecting.html DbiAndDbplyr: DbiAndDbplyr.html Querying: Querying.html -last_built: 2023-11-08T13:18Z +last_built: 2023-11-28T09:55Z diff --git a/docs/pull_request_template.html b/docs/pull_request_template.html index edc816be..abcb313a 100644 --- a/docs/pull_request_template.html +++ b/docs/pull_request_template.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1
diff --git a/docs/reference/DatabaseConnector-package.html b/docs/reference/DatabaseConnector-package.html index 36dc0b7e..f5bb4e60 100644 --- a/docs/reference/DatabaseConnector-package.html +++ b/docs/reference/DatabaseConnector-package.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/DatabaseConnectorDbiResult-class.html b/docs/reference/DatabaseConnectorDbiResult-class.html index 4f81b4ff..5784ebf2 100644 --- a/docs/reference/DatabaseConnectorDbiResult-class.html +++ b/docs/reference/DatabaseConnectorDbiResult-class.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/DatabaseConnectorDriver-class.html b/docs/reference/DatabaseConnectorDriver-class.html index 54407e61..4d798468 100644 --- a/docs/reference/DatabaseConnectorDriver-class.html +++ b/docs/reference/DatabaseConnectorDriver-class.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/DatabaseConnectorDriver.html b/docs/reference/DatabaseConnectorDriver.html index d38dd784..62ca4664 100644 --- a/docs/reference/DatabaseConnectorDriver.html +++ b/docs/reference/DatabaseConnectorDriver.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/DatabaseConnectorJdbcResult-class.html b/docs/reference/DatabaseConnectorJdbcResult-class.html index 640494bf..bd0162e7 100644 --- a/docs/reference/DatabaseConnectorJdbcResult-class.html +++ b/docs/reference/DatabaseConnectorJdbcResult-class.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/assertTempEmulationSchemaSet.html b/docs/reference/assertTempEmulationSchemaSet.html index e12be44b..5a7431a6 100644 --- a/docs/reference/assertTempEmulationSchemaSet.html +++ b/docs/reference/assertTempEmulationSchemaSet.html @@ -19,7 +19,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/computeDataHash.html b/docs/reference/computeDataHash.html index d4bec885..faf97ea4 100644 --- a/docs/reference/computeDataHash.html +++ b/docs/reference/computeDataHash.html @@ -19,7 +19,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/connect.html b/docs/reference/connect.html index 60a1c286..3705efe8 100644 --- a/docs/reference/connect.html +++ b/docs/reference/connect.html @@ -152,7 +152,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/createConnectionDetails.html b/docs/reference/createConnectionDetails.html index 672f7a84..e1acc726 100644 --- a/docs/reference/createConnectionDetails.html +++ b/docs/reference/createConnectionDetails.html @@ -151,7 +151,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/createDbiConnectionDetails.html b/docs/reference/createDbiConnectionDetails.html index 1efc90c3..940ef714 100644 --- a/docs/reference/createDbiConnectionDetails.html +++ b/docs/reference/createDbiConnectionDetails.html @@ -19,7 +19,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/createZipFile.html b/docs/reference/createZipFile.html index 241c64ea..98528ab3 100644 --- a/docs/reference/createZipFile.html +++ b/docs/reference/createZipFile.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dateAdd.html b/docs/reference/dateAdd.html index e9f1cc25..d7f063a7 100644 --- a/docs/reference/dateAdd.html +++ b/docs/reference/dateAdd.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dateDiff.html b/docs/reference/dateDiff.html index 9593d103..6d28c4bc 100644 --- a/docs/reference/dateDiff.html +++ b/docs/reference/dateDiff.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dateFromParts.html b/docs/reference/dateFromParts.html index c01ab6d7..28c21da2 100644 --- a/docs/reference/dateFromParts.html +++ b/docs/reference/dateFromParts.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/day.html b/docs/reference/day.html index 8fcb040e..2939b13e 100644 --- a/docs/reference/day.html +++ b/docs/reference/day.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbAppendTable-DatabaseConnectorConnection-character-method.html b/docs/reference/dbAppendTable-DatabaseConnectorConnection-character-method.html index c8ef7e25..c9b48992 100644 --- a/docs/reference/dbAppendTable-DatabaseConnectorConnection-character-method.html +++ b/docs/reference/dbAppendTable-DatabaseConnectorConnection-character-method.html @@ -25,7 +25,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbClearResult-DatabaseConnectorDbiResult-method.html b/docs/reference/dbClearResult-DatabaseConnectorDbiResult-method.html index 5216204d..44d3b314 100644 --- a/docs/reference/dbClearResult-DatabaseConnectorDbiResult-method.html +++ b/docs/reference/dbClearResult-DatabaseConnectorDbiResult-method.html @@ -19,7 +19,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbClearResult-DatabaseConnectorJdbcResult-method.html b/docs/reference/dbClearResult-DatabaseConnectorJdbcResult-method.html index a9f6e186..4b834b92 100644 --- a/docs/reference/dbClearResult-DatabaseConnectorJdbcResult-method.html +++ b/docs/reference/dbClearResult-DatabaseConnectorJdbcResult-method.html @@ -19,7 +19,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbColumnInfo-DatabaseConnectorDbiResult-method.html b/docs/reference/dbColumnInfo-DatabaseConnectorDbiResult-method.html index 88182aae..3a1f592b 100644 --- a/docs/reference/dbColumnInfo-DatabaseConnectorDbiResult-method.html +++ b/docs/reference/dbColumnInfo-DatabaseConnectorDbiResult-method.html @@ -20,7 +20,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbColumnInfo-DatabaseConnectorJdbcResult-method.html b/docs/reference/dbColumnInfo-DatabaseConnectorJdbcResult-method.html index d76696ee..441262b0 100644 --- a/docs/reference/dbColumnInfo-DatabaseConnectorJdbcResult-method.html +++ b/docs/reference/dbColumnInfo-DatabaseConnectorJdbcResult-method.html @@ -20,7 +20,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbConnect-DatabaseConnectorDriver-method.html b/docs/reference/dbConnect-DatabaseConnectorDriver-method.html index 28594da0..3c154811 100644 --- a/docs/reference/dbConnect-DatabaseConnectorDriver-method.html +++ b/docs/reference/dbConnect-DatabaseConnectorDriver-method.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbCreateTable-DatabaseConnectorConnection-method.html b/docs/reference/dbCreateTable-DatabaseConnectorConnection-method.html index 1c6c7538..4f05470b 100644 --- a/docs/reference/dbCreateTable-DatabaseConnectorConnection-method.html +++ b/docs/reference/dbCreateTable-DatabaseConnectorConnection-method.html @@ -22,7 +22,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbDisconnect-DatabaseConnectorConnection-method.html b/docs/reference/dbDisconnect-DatabaseConnectorConnection-method.html index d6c0be6e..34f0a28e 100644 --- a/docs/reference/dbDisconnect-DatabaseConnectorConnection-method.html +++ b/docs/reference/dbDisconnect-DatabaseConnectorConnection-method.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbExecute-DatabaseConnectorConnection-character-method.html b/docs/reference/dbExecute-DatabaseConnectorConnection-character-method.html index 294dcb9a..4559c2b3 100644 --- a/docs/reference/dbExecute-DatabaseConnectorConnection-character-method.html +++ b/docs/reference/dbExecute-DatabaseConnectorConnection-character-method.html @@ -23,7 +23,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbExistsTable-DatabaseConnectorConnection-character-method.html b/docs/reference/dbExistsTable-DatabaseConnectorConnection-character-method.html index 61bd7a36..ccf819c4 100644 --- a/docs/reference/dbExistsTable-DatabaseConnectorConnection-character-method.html +++ b/docs/reference/dbExistsTable-DatabaseConnectorConnection-character-method.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbFetch-DatabaseConnectorDbiResult-method.html b/docs/reference/dbFetch-DatabaseConnectorDbiResult-method.html index dbda3d88..9267e432 100644 --- a/docs/reference/dbFetch-DatabaseConnectorDbiResult-method.html +++ b/docs/reference/dbFetch-DatabaseConnectorDbiResult-method.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbFetch-DatabaseConnectorJdbcResult-method.html b/docs/reference/dbFetch-DatabaseConnectorJdbcResult-method.html index 5c7652b3..8bc224ff 100644 --- a/docs/reference/dbFetch-DatabaseConnectorJdbcResult-method.html +++ b/docs/reference/dbFetch-DatabaseConnectorJdbcResult-method.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbGetInfo-DatabaseConnectorConnection-method.html b/docs/reference/dbGetInfo-DatabaseConnectorConnection-method.html index 65f4104a..11871089 100644 --- a/docs/reference/dbGetInfo-DatabaseConnectorConnection-method.html +++ b/docs/reference/dbGetInfo-DatabaseConnectorConnection-method.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbGetInfo-DatabaseConnectorDriver-method.html b/docs/reference/dbGetInfo-DatabaseConnectorDriver-method.html index 8c4f2e8b..5a36631a 100644 --- a/docs/reference/dbGetInfo-DatabaseConnectorDriver-method.html +++ b/docs/reference/dbGetInfo-DatabaseConnectorDriver-method.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbGetQuery-DatabaseConnectorConnection-character-method.html b/docs/reference/dbGetQuery-DatabaseConnectorConnection-character-method.html index e279a0bd..5564e708 100644 --- a/docs/reference/dbGetQuery-DatabaseConnectorConnection-character-method.html +++ b/docs/reference/dbGetQuery-DatabaseConnectorConnection-character-method.html @@ -23,7 +23,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbGetRowCount-DatabaseConnectorDbiResult-method.html b/docs/reference/dbGetRowCount-DatabaseConnectorDbiResult-method.html index 3901f879..6d4fd85c 100644 --- a/docs/reference/dbGetRowCount-DatabaseConnectorDbiResult-method.html +++ b/docs/reference/dbGetRowCount-DatabaseConnectorDbiResult-method.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbGetRowCount-DatabaseConnectorJdbcResult-method.html b/docs/reference/dbGetRowCount-DatabaseConnectorJdbcResult-method.html index 6f95f1ba..31e6eb2c 100644 --- a/docs/reference/dbGetRowCount-DatabaseConnectorJdbcResult-method.html +++ b/docs/reference/dbGetRowCount-DatabaseConnectorJdbcResult-method.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbGetRowsAffected-DatabaseConnectorDbiResult-method.html b/docs/reference/dbGetRowsAffected-DatabaseConnectorDbiResult-method.html index f03c47e6..1a5084f2 100644 --- a/docs/reference/dbGetRowsAffected-DatabaseConnectorDbiResult-method.html +++ b/docs/reference/dbGetRowsAffected-DatabaseConnectorDbiResult-method.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbGetRowsAffected-DatabaseConnectorJdbcResult-method.html b/docs/reference/dbGetRowsAffected-DatabaseConnectorJdbcResult-method.html index 821ed731..d29e772d 100644 --- a/docs/reference/dbGetRowsAffected-DatabaseConnectorJdbcResult-method.html +++ b/docs/reference/dbGetRowsAffected-DatabaseConnectorJdbcResult-method.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbGetStatement-DatabaseConnectorDbiResult-method.html b/docs/reference/dbGetStatement-DatabaseConnectorDbiResult-method.html index de1a5dd7..5ec15ad3 100644 --- a/docs/reference/dbGetStatement-DatabaseConnectorDbiResult-method.html +++ b/docs/reference/dbGetStatement-DatabaseConnectorDbiResult-method.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbGetStatement-DatabaseConnectorJdbcResult-method.html b/docs/reference/dbGetStatement-DatabaseConnectorJdbcResult-method.html index dc6cfd98..4542bd89 100644 --- a/docs/reference/dbGetStatement-DatabaseConnectorJdbcResult-method.html +++ b/docs/reference/dbGetStatement-DatabaseConnectorJdbcResult-method.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbHasCompleted-DatabaseConnectorDbiResult-method.html b/docs/reference/dbHasCompleted-DatabaseConnectorDbiResult-method.html index 3f4e4875..0aaad9ee 100644 --- a/docs/reference/dbHasCompleted-DatabaseConnectorDbiResult-method.html +++ b/docs/reference/dbHasCompleted-DatabaseConnectorDbiResult-method.html @@ -19,7 +19,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbHasCompleted-DatabaseConnectorJdbcResult-method.html b/docs/reference/dbHasCompleted-DatabaseConnectorJdbcResult-method.html index 7b0ef020..68efbd52 100644 --- a/docs/reference/dbHasCompleted-DatabaseConnectorJdbcResult-method.html +++ b/docs/reference/dbHasCompleted-DatabaseConnectorJdbcResult-method.html @@ -19,7 +19,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbIsValid-DatabaseConnectorDbiConnection-method.html b/docs/reference/dbIsValid-DatabaseConnectorDbiConnection-method.html index 83c0b58f..0aa67408 100644 --- a/docs/reference/dbIsValid-DatabaseConnectorDbiConnection-method.html +++ b/docs/reference/dbIsValid-DatabaseConnectorDbiConnection-method.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbIsValid-DatabaseConnectorJdbcConnection-method.html b/docs/reference/dbIsValid-DatabaseConnectorJdbcConnection-method.html index f35ec937..e131e592 100644 --- a/docs/reference/dbIsValid-DatabaseConnectorJdbcConnection-method.html +++ b/docs/reference/dbIsValid-DatabaseConnectorJdbcConnection-method.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbListFields-DatabaseConnectorConnection-character-method.html b/docs/reference/dbListFields-DatabaseConnectorConnection-character-method.html index cfaf80c8..344ade9b 100644 --- a/docs/reference/dbListFields-DatabaseConnectorConnection-character-method.html +++ b/docs/reference/dbListFields-DatabaseConnectorConnection-character-method.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbListTables-DatabaseConnectorConnection-method.html b/docs/reference/dbListTables-DatabaseConnectorConnection-method.html index c57b20c8..a84dd745 100644 --- a/docs/reference/dbListTables-DatabaseConnectorConnection-method.html +++ b/docs/reference/dbListTables-DatabaseConnectorConnection-method.html @@ -20,7 +20,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbReadTable-DatabaseConnectorConnection-character-method.html b/docs/reference/dbReadTable-DatabaseConnectorConnection-character-method.html index a9d6eb53..99302622 100644 --- a/docs/reference/dbReadTable-DatabaseConnectorConnection-character-method.html +++ b/docs/reference/dbReadTable-DatabaseConnectorConnection-character-method.html @@ -19,7 +19,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbRemoveTable-DatabaseConnectorConnection-ANY-method.html b/docs/reference/dbRemoveTable-DatabaseConnectorConnection-ANY-method.html index 0bbeb660..8d79f187 100644 --- a/docs/reference/dbRemoveTable-DatabaseConnectorConnection-ANY-method.html +++ b/docs/reference/dbRemoveTable-DatabaseConnectorConnection-ANY-method.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbSendQuery-DatabaseConnectorDbiConnection-character-method.html b/docs/reference/dbSendQuery-DatabaseConnectorDbiConnection-character-method.html index 9aba5b3f..939affee 100644 --- a/docs/reference/dbSendQuery-DatabaseConnectorDbiConnection-character-method.html +++ b/docs/reference/dbSendQuery-DatabaseConnectorDbiConnection-character-method.html @@ -22,7 +22,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbSendQuery-DatabaseConnectorJdbcConnection-character-method.html b/docs/reference/dbSendQuery-DatabaseConnectorJdbcConnection-character-method.html index 9e7454c2..b749a9b2 100644 --- a/docs/reference/dbSendQuery-DatabaseConnectorJdbcConnection-character-method.html +++ b/docs/reference/dbSendQuery-DatabaseConnectorJdbcConnection-character-method.html @@ -22,7 +22,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbSendStatement-DatabaseConnectorConnection-character-method.html b/docs/reference/dbSendStatement-DatabaseConnectorConnection-character-method.html index b725655c..c41bd96b 100644 --- a/docs/reference/dbSendStatement-DatabaseConnectorConnection-character-method.html +++ b/docs/reference/dbSendStatement-DatabaseConnectorConnection-character-method.html @@ -23,7 +23,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbUnloadDriver-DatabaseConnectorDriver-method.html b/docs/reference/dbUnloadDriver-DatabaseConnectorDriver-method.html index b6a862f9..b9b841b5 100644 --- a/docs/reference/dbUnloadDriver-DatabaseConnectorDriver-method.html +++ b/docs/reference/dbUnloadDriver-DatabaseConnectorDriver-method.html @@ -25,7 +25,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbWriteTable-DatabaseConnectorConnection-ANY-method.html b/docs/reference/dbWriteTable-DatabaseConnectorConnection-ANY-method.html index eeefe22f..1e79bbfd 100644 --- a/docs/reference/dbWriteTable-DatabaseConnectorConnection-ANY-method.html +++ b/docs/reference/dbWriteTable-DatabaseConnectorConnection-ANY-method.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dbms.html b/docs/reference/dbms.html index f6a56def..83558e5b 100644 --- a/docs/reference/dbms.html +++ b/docs/reference/dbms.html @@ -20,7 +20,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/disconnect.html b/docs/reference/disconnect.html index 3183b0cc..f13f0191 100644 --- a/docs/reference/disconnect.html +++ b/docs/reference/disconnect.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/downloadJdbcDrivers.html b/docs/reference/downloadJdbcDrivers.html index 45fc6188..181ab780 100644 --- a/docs/reference/downloadJdbcDrivers.html +++ b/docs/reference/downloadJdbcDrivers.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/dropEmulatedTempTables.html b/docs/reference/dropEmulatedTempTables.html index 149610f7..7395aff3 100644 --- a/docs/reference/dropEmulatedTempTables.html +++ b/docs/reference/dropEmulatedTempTables.html @@ -20,7 +20,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/eoMonth.html b/docs/reference/eoMonth.html index 5fddef98..e0c77418 100644 --- a/docs/reference/eoMonth.html +++ b/docs/reference/eoMonth.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/executeSql.html b/docs/reference/executeSql.html index 9f58ddb6..6000c1cd 100644 --- a/docs/reference/executeSql.html +++ b/docs/reference/executeSql.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/existsTable.html b/docs/reference/existsTable.html index 21659b49..034025f6 100644 --- a/docs/reference/existsTable.html +++ b/docs/reference/existsTable.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/extractQueryTimes.html b/docs/reference/extractQueryTimes.html index c616cbea..ca3facbb 100644 --- a/docs/reference/extractQueryTimes.html +++ b/docs/reference/extractQueryTimes.html @@ -19,7 +19,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 @@ -105,15 +105,15 @@

Examples

executeSql(connection, "CREATE TABLE test (x INT);") #> | | | 0% | |======================================================================| 100% -#> Executing SQL took 0.0109 secs +#> Executing SQL took 0.0102 secs querySql(connection, "SELECT * FROM test;") #> [1] X #> <0 rows> (or 0-length row.names) extractQueryTimes(logFile) #> query startTime milliseconds thread -#> 1 CREATE TABLE test (x INT) 2023-11-08 14:18:33 1 Main thread -#> 2 SELECT * FROM test 2023-11-08 14:18:33 2 Main thread +#> 1 CREATE TABLE test (x INT) 2023-11-28 10:55:14 0 Main thread +#> 2 SELECT * FROM test 2023-11-28 10:55:14 1 Main thread ParallelLogger::unregisterLogger("MY_LOGGER") #> [1] TRUE diff --git a/docs/reference/getAvailableJavaHeapSpace.html b/docs/reference/getAvailableJavaHeapSpace.html index b2210397..09708941 100644 --- a/docs/reference/getAvailableJavaHeapSpace.html +++ b/docs/reference/getAvailableJavaHeapSpace.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/getTableNames.html b/docs/reference/getTableNames.html index 58de9a40..005fe33c 100644 --- a/docs/reference/getTableNames.html +++ b/docs/reference/getTableNames.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/inDatabaseSchema.html b/docs/reference/inDatabaseSchema.html index 9069a3b4..2ce6ee8d 100644 --- a/docs/reference/inDatabaseSchema.html +++ b/docs/reference/inDatabaseSchema.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/index.html b/docs/reference/index.html index 0bea3d87..f9bed5ae 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 @@ -70,6 +70,10 @@

All functions

+

DatabaseConnectorDriver()

+ +

Create a DatabaseConnectorDriver object

+

assertTempEmulationSchemaSet()

Assert the temp emulation schema is set

@@ -93,10 +97,6 @@

All functions createZipFile()

Compress files and/or folders into a single zip file

- -

DatabaseConnectorDriver()

- -

Create a DatabaseConnectorDriver object

dateAdd()

@@ -221,10 +221,6 @@

All functions dbListTables(<DatabaseConnectorConnection>)

List remote tables

- -

dbms()

- -

Get the database platform from a connection

dbReadTable(<DatabaseConnectorConnection>,<character>)

@@ -253,6 +249,10 @@

All functions dbWriteTable(<DatabaseConnectorConnection>,<ANY>)

Copy data frames to database tables

+ +

dbms()

+ +

Get the database platform from a connection

disconnect()

diff --git a/docs/reference/insertTable.html b/docs/reference/insertTable.html index 7e0453c6..8e201641 100644 --- a/docs/reference/insertTable.html +++ b/docs/reference/insertTable.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 @@ -176,7 +176,8 @@

Details

of the binary.

PostgreSQL: Uses the 'psql' executable to upload. Set the POSTGRES_PATH environment variable to the Postgres -binary path, e.g. 'C:/Program Files/PostgreSQL/11/bin'.

+binary path, e.g. 'C:/Program Files/PostgreSQL/11/bin' on Windows or '/Library/PostgreSQL/16/bin' +on MacOs.

diff --git a/docs/reference/isSqlReservedWord.html b/docs/reference/isSqlReservedWord.html index 62fd9cc4..9d5379a2 100644 --- a/docs/reference/isSqlReservedWord.html +++ b/docs/reference/isSqlReservedWord.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1
diff --git a/docs/reference/jdbcDrivers.html b/docs/reference/jdbcDrivers.html index 175e2346..9cabf1f6 100644 --- a/docs/reference/jdbcDrivers.html +++ b/docs/reference/jdbcDrivers.html @@ -20,7 +20,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/lowLevelExecuteSql.html b/docs/reference/lowLevelExecuteSql.html index f3e7b27c..77d496a7 100644 --- a/docs/reference/lowLevelExecuteSql.html +++ b/docs/reference/lowLevelExecuteSql.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/lowLevelQuerySql.html b/docs/reference/lowLevelQuerySql.html index de89effc..a9ed82cc 100644 --- a/docs/reference/lowLevelQuerySql.html +++ b/docs/reference/lowLevelQuerySql.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/lowLevelQuerySqlToAndromeda.html b/docs/reference/lowLevelQuerySqlToAndromeda.html index 5405e6ac..2ec11e46 100644 --- a/docs/reference/lowLevelQuerySqlToAndromeda.html +++ b/docs/reference/lowLevelQuerySqlToAndromeda.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/month.html b/docs/reference/month.html index cd71d614..4253b65c 100644 --- a/docs/reference/month.html +++ b/docs/reference/month.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/querySql.html b/docs/reference/querySql.html index b2b3a4af..739f8645 100644 --- a/docs/reference/querySql.html +++ b/docs/reference/querySql.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/querySqlToAndromeda.html b/docs/reference/querySqlToAndromeda.html index 5d4bb6b2..b0b1b02f 100644 --- a/docs/reference/querySqlToAndromeda.html +++ b/docs/reference/querySqlToAndromeda.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/renderTranslateExecuteSql.html b/docs/reference/renderTranslateExecuteSql.html index 8e66a7d9..6b2e0026 100644 --- a/docs/reference/renderTranslateExecuteSql.html +++ b/docs/reference/renderTranslateExecuteSql.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/renderTranslateQueryApplyBatched.html b/docs/reference/renderTranslateQueryApplyBatched.html index 28526a00..b386cedd 100644 --- a/docs/reference/renderTranslateQueryApplyBatched.html +++ b/docs/reference/renderTranslateQueryApplyBatched.html @@ -20,7 +20,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/renderTranslateQuerySql.html b/docs/reference/renderTranslateQuerySql.html index 4573529d..7f228e8a 100644 --- a/docs/reference/renderTranslateQuerySql.html +++ b/docs/reference/renderTranslateQuerySql.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/renderTranslateQuerySqlToAndromeda.html b/docs/reference/renderTranslateQuerySqlToAndromeda.html index 99f38d21..0822499c 100644 --- a/docs/reference/renderTranslateQuerySqlToAndromeda.html +++ b/docs/reference/renderTranslateQuerySqlToAndromeda.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/requiresTempEmulation.html b/docs/reference/requiresTempEmulation.html index 0e734353..23dbf978 100644 --- a/docs/reference/requiresTempEmulation.html +++ b/docs/reference/requiresTempEmulation.html @@ -17,7 +17,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/reference/year.html b/docs/reference/year.html index 03b93f81..a54555bb 100644 --- a/docs/reference/year.html +++ b/docs/reference/year.html @@ -18,7 +18,7 @@ DatabaseConnector - 6.3.0 + 6.3.1 diff --git a/docs/sitemap.xml b/docs/sitemap.xml index 6bfeb4c5..7612b12d 100644 --- a/docs/sitemap.xml +++ b/docs/sitemap.xml @@ -9,15 +9,15 @@ /articles/DbiAndDbplyr.html - - /articles/index.html - /articles/Querying.html /articles/UsingDatabaseConnector.html + + /articles/index.html + /authors.html @@ -31,52 +31,55 @@ /pull_request_template.html - /reference/assertTempEmulationSchemaSet.html + /reference/DatabaseConnector-package.html - /reference/computeDataHash.html + /reference/DatabaseConnector.html - /reference/connect.html + /reference/DatabaseConnectorConnection-class.html - /reference/createConnectionDetails.html + /reference/DatabaseConnectorDbiConnection-class.html - /reference/createDbiConnectionDetails.html + /reference/DatabaseConnectorDbiResult-class.html - /reference/createZipFile.html + /reference/DatabaseConnectorDriver-class.html - /reference/DatabaseConnector-package.html + /reference/DatabaseConnectorDriver.html - /reference/DatabaseConnector.html + /reference/DatabaseConnectorJdbcConnection-class.html - /reference/DatabaseConnectorConnection-class.html + /reference/DatabaseConnectorJdbcResult-class.html - /reference/DatabaseConnectorDbiConnection-class.html + /reference/DatabaseConnectorResult-class.html - /reference/DatabaseConnectorDbiResult-class.html + /reference/Microsoft-SQL-Server-class.html - /reference/DatabaseConnectorDriver-class.html + /reference/assertTempEmulationSchemaSet.html - /reference/DatabaseConnectorDriver.html + /reference/computeDataHash.html - /reference/DatabaseConnectorJdbcConnection-class.html + /reference/connect.html - /reference/DatabaseConnectorJdbcResult-class.html + /reference/createConnectionDetails.html - /reference/DatabaseConnectorResult-class.html + /reference/createDbiConnectionDetails.html + + + /reference/createZipFile.html /reference/dateAdd.html @@ -201,9 +204,6 @@ /reference/dbListTables-DatabaseConnectorConnection-method.html - - /reference/dbms.html - /reference/dbQuoteIdentifier-DatabaseConnectorConnection-character-method.html @@ -240,6 +240,9 @@ /reference/dbWriteTable-DatabaseConnectorConnection-character-data.frame-method.html + + /reference/dbms.html + /reference/disconnect.html @@ -294,9 +297,6 @@ /reference/lowLevelQuerySqlToAndromeda.html - - /reference/Microsoft-SQL-Server-class.html - /reference/month.html diff --git a/extras/DatabaseConnector.pdf b/extras/DatabaseConnector.pdf index 001e6423..f3d22638 100644 Binary files a/extras/DatabaseConnector.pdf and b/extras/DatabaseConnector.pdf differ diff --git a/extras/PackageMaintenance.R b/extras/PackageMaintenance.R index 1470e15a..c560b21f 100644 --- a/extras/PackageMaintenance.R +++ b/extras/PackageMaintenance.R @@ -32,7 +32,7 @@ devtools::spell_check() # Create manual ---------------------------------------------------------------- unlink("extras/DatabaseConnector.pdf") -shell("R CMD Rd2pdf ./ --output=extras/DatabaseConnector.pdf") +system("R CMD Rd2pdf ./ --output=extras/DatabaseConnector.pdf") dir.create("inst/doc") rmarkdown::render("vignettes/Connecting.Rmd", diff --git a/extras/UploadDataToTestServer.R b/extras/UploadDataToTestServer.R index 6d53e37a..46523c06 100644 --- a/extras/UploadDataToTestServer.R +++ b/extras/UploadDataToTestServer.R @@ -44,7 +44,7 @@ disconnect(eunomiaConn) # Copy data from one test server to another ------------------------------------ library(DatabaseConnector) -options(andromedaTempFolder = "e:/andromedaTemp") +# options(andromedaTempFolder = "e:/andromedaTemp") fromConnection <- connect( dbms = "sql server", @@ -72,6 +72,7 @@ toDatabaseSchema <- Sys.getenv("CDM5_POSTGRESQL_CDM_SCHEMA") tableNames <- getTableNames(fromConnection, fromDatabaseSchema) +tableNames <- tableNames[tableNames != "note_nlp"] for (i in seq_along(tableNames)) { # for (i in 31:length(tableNames)) { message(sprintf("Copying table %s", tableNames[i])) @@ -92,7 +93,6 @@ for (i in seq_along(tableNames)) { createTable = TRUE, progressBar = TRUE ) - # querySql(toConnection, "SELECT * FROM cdmv5.condition_era LIMIT 10;") Andromeda::close(andromeda) } diff --git a/inst/doc/Connecting.pdf b/inst/doc/Connecting.pdf index 5860d1ce..9fcd1246 100644 Binary files a/inst/doc/Connecting.pdf and b/inst/doc/Connecting.pdf differ diff --git a/inst/doc/DbiAndDbplyr.pdf b/inst/doc/DbiAndDbplyr.pdf index da7f83dc..2e5834de 100644 Binary files a/inst/doc/DbiAndDbplyr.pdf and b/inst/doc/DbiAndDbplyr.pdf differ diff --git a/inst/doc/Querying.pdf b/inst/doc/Querying.pdf index 296276c4..861dd431 100644 Binary files a/inst/doc/Querying.pdf and b/inst/doc/Querying.pdf differ diff --git a/man/insertTable.Rd b/man/insertTable.Rd index 1b4da611..0b0ce640 100644 --- a/man/insertTable.Rd +++ b/man/insertTable.Rd @@ -86,7 +86,8 @@ of the binary. PostgreSQL: Uses the 'psql' executable to upload. Set the POSTGRES_PATH environment variable to the Postgres -binary path, e.g. 'C:/Program Files/PostgreSQL/11/bin'. +binary path, e.g. 'C:/Program Files/PostgreSQL/11/bin' on Windows or '/Library/PostgreSQL/16/bin' +on MacOs. } \examples{ \dontrun{ diff --git a/tests/testthat/testthat-problems.rds b/tests/testthat/testthat-problems.rds new file mode 100644 index 00000000..4ff38fdc Binary files /dev/null and b/tests/testthat/testthat-problems.rds differ