NEq cycling rebase #5
Workflow file for this run
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name: "CI" | |
on: | |
pull_request: | |
branches: | |
- main | |
push: | |
branches: | |
- main | |
schedule: | |
# At 07:00 UTC on Monday and Thursday. | |
- cron: "0 7 * * *" | |
release: | |
types: | |
- published | |
concurrency: | |
group: "${{ github.workflow }}-${{ github.ref }}" | |
cancel-in-progress: true | |
defaults: | |
run: | |
shell: bash -l {0} | |
jobs: | |
tests: | |
runs-on: ${{ matrix.os }}-latest | |
name: "💻-${{matrix.os }} 🐍-${{ matrix.python-version }} 🗃️${{ matrix.pydantic-version }}" | |
strategy: | |
fail-fast: false | |
matrix: | |
os: ["ubuntu"] | |
pydantic-version: [">1"] | |
python-version: | |
- "3.9" | |
- "3.10" | |
- "3.11" | |
include: | |
- os: "macos" | |
python-version: "3.11" | |
pydantic-version: ">1" | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: "Setup Micromamba" | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-file: devtools/conda-envs/test_env.yaml | |
environment-name: feflow-env | |
cache-environment: true | |
cache-downloads: true | |
create-args: >- | |
python=${{ matrix.python-version }} | |
init-shell: bash | |
- name: "Install" | |
run: python -m pip install --no-deps -e . | |
- name: "Test imports" | |
run: | | |
# if we add more to this, consider changing to for + env vars | |
python -Ic "import feflow; print(feflow.__version__)" | |
- name: "Environment Information" | |
run: | | |
micromamba info | |
micromamba list | |
- name: "Run tests" | |
env: | |
# Set the OFE_SLOW_TESTS to True if running a Cron job | |
OFE_SLOW_TESTS: ${{ fromJSON('{"false":"false","true":"true"}')[github.event_name != 'pull_request'] }} | |
run: | | |
pytest -n auto -v --cov=feflow --cov-report=xml --durations=10 | |
- name: codecov | |
if: ${{ github.repository == 'choderalab/feflow' | |
&& github.event_name == 'pull_request' }} | |
uses: codecov/codecov-action@v3 | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} | |
file: coverage.xml | |
fail_ci_if_error: False | |
verbose: True |