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gpu-runner.yaml
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name: Self-Hosted Runner
on:
workflow_dispatch:
schedule:
- cron: '0 0 * * 0' # Run weekly at 00:00 on Sundays
jobs:
start-aws-runner:
runs-on: ubuntu-latest
permissions:
id-token: write
contents: read
outputs:
mapping: ${{ steps.aws-start.outputs.mapping }}
steps:
- name: Configure AWS credentials
uses: aws-actions/configure-aws-credentials@v4
with:
role-to-assume: arn:aws:iam::010438489691:role/GHARunnerAWS
aws-region: us-east-2
- name: Create cloud runner
id: aws-start
uses: omsf-eco-infra/[email protected]
with:
provider: "aws"
action: "start"
aws_image_id: ami-0b7f661c228e6a4bb
aws_instance_type: g4dn.xlarge
aws_region_name: us-east-2
aws_home_dir: /home/ubuntu
env:
GH_PAT: ${{ secrets.GH_PAT }}
self-hosted-test:
runs-on: self-hosted
timeout-minutes: 720 # 12 hours
defaults:
run:
shell: bash -leo pipefail {0}
env:
OE_LICENSE: ${{ github.workspace }}/oe_license.txt
needs:
- start-aws-runner
steps:
- uses: actions/checkout@v4
- name: Print disk usage
run: "df -h"
- name: Print Docker details
run: "docker version || true"
- name: Check for nvidia-smi
run: "nvidia-smi"
- name: "Setup Micromamba"
uses: mamba-org/setup-micromamba@v1
with:
environment-file: devtools/conda-envs/test_env.yaml
- name: "Check if OpenMM can get a GPU"
run: python -m openmm.testInstallation
- name: "Install"
run: python -m pip install --no-deps -e .
- name: "Test imports"
run: python -Ic "import feflow; print(feflow.__version__)"
- name: "Environment Information"
run: |
micromamba info
micromamba list
pip list
- name: Decrypt OpenEye license
shell: bash -l {0}
env:
OE_LICENSE_TEXT: ${{ secrets.OE_LICENSE }}
run: |
echo "${OE_LICENSE_TEXT}" > ${OE_LICENSE}
python -c "import openeye; assert openeye.oechem.OEChemIsLicensed(), 'OpenEye license checks failed!'"
- name: "Run tests"
run: |
pytest -n 4 -v --durations=10 --cov=feflow --cov-report=term --runslow feflow/tests
stop-aws-runner:
runs-on: ubuntu-latest
permissions:
id-token: write
contents: read
needs:
- start-aws-runner
- self-hosted-test
if: ${{ always() }}
steps:
- name: Configure AWS credentials
uses: aws-actions/configure-aws-credentials@v4
with:
role-to-assume: arn:aws:iam::010438489691:role/GHARunnerAWS
aws-region: us-east-2
- name: Stop instances
uses: omsf-eco-infra/[email protected]
with:
provider: "aws"
action: "stop"
instance_mapping: ${{ needs.start-aws-runner.outputs.mapping }}
aws_region_name: us-east-2
env:
GH_PAT: ${{ secrets.GH_PAT }}