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configure.sh
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configure.sh
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#!/bin/bash
#################################################################################
## ##
## c o n f i g u r e . s h ##
## ##
## configure script to copy appropriate Makefile.$osname ##
## ##
## Usage: configure.sh [-h] [-v] [-l] [-prefix dir] [-debug] [-check] ##
## [-nompi] [-noerror] [-Dmacro[=value] ...] ##
## ##
## (C) Potsdam Institute for Climate Impact Research (PIK), see COPYRIGHT file ##
## authors, and contributors see AUTHORS file ##
## This file is part of LPJmL and licensed under GNU AGPL Version 3 ##
## or later. See LICENSE file or go to http://www.gnu.org/licenses/ ##
## Contact: https://github.com/PIK-LPJmL/LPJmL ##
#################################################################################
USAGE="Usage: $0 [-h] [-v] [-l] [-prefix dir] [-debug] [-nompi] [-check] [-noerror] [-Dmacro[=value] ...]"
debug=0
nompi=0
prefix=$PWD
macro=""
warning="-Werror"
while(( "$#" )); do
case "$1" in
-h|--help)
echo $0 - configure LPJmL $(cat VERSION)
echo
echo $USAGE
echo
echo Arguments:
echo "-h,--help print this help text"
echo "-v,--version print version"
echo "-l,--license print license"
echo "-prefix dir set installation directory for LPJmL. Default is current directory"
echo "-debug set debug flags and disable optimization"
echo "-check set debug flags, enable pointer checking and disable optimization"
echo "-noerror do not stop compilation on warnings"
echo "-nompi do not build MPI version"
echo "-Dmacro[=value] define macro for compilation"
echo
echo After successfull completion of $0 LPJmL can be compiled by make all
echo Invoke make clean after change in configuration
echo -e "\nSee LICENSE file or invoke $0 -l to print license"
echo -e "\n(C) Potsdam Institute for Climate Impact Research (PIK), see COPYRIGHT file"
exit 0
;;
-l|--license)
more LICENSE
exit 0
;;
-v|--version)
cat VERSION
exit 0
;;
-prefix)
if [ $# -lt 2 ]
then
echo >&2 Error: prefix directory missing
echo >&2 $USAGE
exit 1
fi
prefix=$2
shift 2
;;
-debug)
debug=1
shift 1
;;
-check)
debug=2
shift 1
;;
-noerror)
warning=""
shift 1
;;
-nompi)
nompi=1
shift 1
;;
-D*)
macro="$macro $1"
shift 1
;;
-*)
echo >&2 Invalid option $1
echo >&2 $USAGE
exit 1
;;
*)
echo >&2 Invalid argument $1
echo >&2 $USAGE
exit 1
;;
esac
done
echo Configuring LPJmL $(cat VERSION)...
osname=$(uname)
if test -d /p ;
then
inpath=/p/projects/lpjml/input/historical
else
inpath=""
echo >&2 No input directory found, LPJINPATH has to be set
fi
if [ "$osname" = "Linux" ] || [ "$osname" = "CYGWIN_NT-5.1" ]
then
echo Operating system is $osname
if [ "$nompi" = "1" ]
then
if which icx >/dev/null 2>/dev/null ;
then
cp config/Makefile.icx Makefile.inc
elif which icc >/dev/null 2>/dev/null ;
then
warning=""
cp config/Makefile.intel Makefile.inc
elif which gcc >/dev/null 2>/dev/null ;
then
cp config/Makefile.gcc Makefile.inc
else
echo >&2 Error: No gcc found
exit 1
fi
else
if which mpiicx >/dev/null 2>/dev/null ;
then
echo New Intel MPI found
cp config/Makefile.hpc2024 Makefile.inc
if which sbatch >/dev/null 2>/dev/null ;
then
echo SLURM found
ln -sf lpjsubmit_hpc bin/lpjsubmit
else
echo >2 No batch system found
fi
elif which mpiicc >/dev/null 2>/dev/null ;
then
echo Intel MPI found
warning=""
cp config/Makefile.cluster2015 Makefile.inc
if which llsubmit >/dev/null 2>/dev/null ;
then
echo LoadLeveler found
ln -sf lpjsubmit_intel bin/lpjsubmit
elif which sbatch >/dev/null 2>/dev/null ;
then
echo SLURM found
ln -sf lpjsubmit_slurm bin/lpjsubmit
else
echo >2 No batch system found
fi
elif which mpicc >/dev/null 2>/dev/null ;
then
cp config/Makefile.mpich Makefile.inc
ln -sf lpjsubmit_mpich bin/lpjsubmit
echo MPICH found
elif which icc >/dev/null 2>/dev/null ;
then
warning=""
cp config/Makefile.intel Makefile.inc
elif which gcc >/dev/null 2>/dev/null ;
then
cp config/Makefile.gcc Makefile.inc
else
echo >&2 Error: No gcc found
exit 1
fi
fi
echo Create executables with make all
elif [ "$osname" = "Darwin" ]
then
echo Operating system is $osname
if [ "$nompi" = "1" ]
then
if which icc >/dev/null 2>/dev/null ;
then
cp config/Makefile.intel Makefile.inc
elif which gcc >/dev/null 2>/dev/null ;
then
cp config/Makefile.gcc Makefile.inc
else
echo >&2 Error: No gcc found
exit 1
fi
else
if which mpicc >/dev/null 2>/dev/null ;
then
cp config/Makefile.darwin_mpich Makefile.inc
echo MPICH found
elif which gcc >/dev/null 2>/dev/null ;
then
cp config/Makefile.darwin_cc Makefile.inc
else
echo >&2 Error: No gcc found
exit 1
fi
fi
echo Create executables with make all
elif [ "$osname" = "AIX" ]
then
echo Operating system is AIX
if [ "$nompi" = "1" ]
then
cp config/Makefile.aix Makefile.inc
elif which mpcc >/dev/null 2>/dev/null ;
then
echo IBM MPI found
cp config/Makefile.aix_mpi Makefile.inc
ln -sf lpjsubmit_aix bin/lpjsubmit
else
cp config/Makefile.aix Makefile.inc
fi
echo Create executables with make all
else
echo >&2 Warning: unsupported operating system, Makefile.$osname created
cp config/Makefile.gcc Makefile.$osname
cp config/Makefile.$osname Makefile.inc
fi
if [ "$debug" = "1" ]
then
echo "CFLAGS = \$(WFLAG) \$(LPJFLAGS) $macro $warning \$(DEBUGFLAGS)" >>Makefile.inc
echo "LNOPTS = \$(WFLAG) \$(DEBUGFLAGS) -o " >>Makefile.inc
elif [ "$debug" = "2" ]
then
echo "CFLAGS = \$(WFLAG) \$(LPJFLAGS) $macro $warning \$(CHECKFLAGS)" >>Makefile.inc
echo "LNOPTS = \$(WFLAG) \$(CHECKFLAGS) -o " >>Makefile.inc
else
echo "CFLAGS = \$(WFLAG) \$(LPJFLAGS) $macro $warning \$(OPTFLAGS)" >>Makefile.inc
echo "LNOPTS = \$(WFLAG) \$(OPTFLAGS) -o " >>Makefile.inc
fi
echo LPJROOT = $prefix >>Makefile.inc
cat >bin/lpj_paths.sh <<EOF
#################################################################################
## ##
## l p j _ p a t h s . s h ##
## ##
## sh script to set environment variables for LPJmL. A call to this ##
## script has to be put in ~/.profile in the following way: ##
## ##
## . \$LPJROOT/bin/lpj_paths.sh ##
## ##
## LPJROOT has to be set to your root directory of LPJmL ##
## ##
## (C) Potsdam Institute for Climate Impact Research (PIK), see COPYRIGHT file ##
## authors, and contributors see AUTHORS file ##
## This file is part of LPJmL and licensed under GNU AGPL Version 3 ##
## or later. See LICENSE file or go to http://www.gnu.org/licenses/ ##
## Contact: https://github.com/PIK-LPJmL/LPJmL ##
## ##
## Created: $(date +"%d.%m.%Y") ##
## ##
#################################################################################
export LPJROOT=$prefix # change here to your directory
# set search path for LPJmL commands
export PATH=\$LPJROOT/bin:\$PATH
# set path for input files
export LPJINPATH=$inpath
# include manpages of LPJmL
export MANPATH=\$LPJROOT/man:\$MANPATH
# define alias
alias printheader="printclm -data"
alias soil2cdf="clm2cdf -notime -raw -byte"
alias lpjml='lpjml.sh'
EOF
chmod +x bin/lpj_paths.sh
cat >bin/lpj_paths.csh <<EOF
#################################################################################
## ##
## l p j _ p a t h s . c s h ##
## ##
## csh script to set environment variables for LPJmL. A call to this ##
## script has to be put in ~/.cshrc in the following way: ##
## ##
## source \$LPJROOT/bin/lpj_paths.csh ##
## ##
## LPJROOT has to be set to your root directory of LPJmL ##
## (C) Potsdam Institute for Climate Impact Research (PIK), see COPYRIGHT file ##
## authors, and contributors see AUTHORS file ##
## This file is part of LPJmL and licensed under GNU AGPL Version 3 ##
## or later. See LICENSE file or go to http://www.gnu.org/licenses/ ##
## Contact: https://github.com/PIK-LPJmL/LPJmL ##
## ##
## Created: $(date +"%d.%m.%Y") ##
## ##
#################################################################################
setenv LPJROOT $prefix # change here to your directory
# set search path for LPJmL commands
setenv PATH \$LPJROOT/bin\:\$PATH
# set path for input files
setenv LPJINPATH $inpath
# include manpages of LPJmL
setenv MANPATH \$LPJROOT/man\:\$MANPATH
# define alias
alias printheader "printclm -data"
alias soil2cdf "clm2cdf -notime -raw -byte"
alias lpjml 'lpjml.sh'
EOF
chmod +x bin/lpj_paths.csh
echo Put . $prefix/bin/lpj_paths.sh in your ~/.profile