Skip to content

Issues: PNNL-CompBio/spammR

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

13 Open 6 Closed
13 Open 6 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Check about incorporating mouse geneset databases directly into leapR; making sure spammR::enrich_ORA() still runs.
#28 opened Nov 1, 2024 by HarkiratSohi
@biodataganache
Load Pancreas dataset with tissue image(s) and metadata file
#27 opened Nov 1, 2024 by HarkiratSohi
@sgosline
Resolve loading of other packages used by spammR
#26 opened Nov 1, 2024 by HarkiratSohi
Add to TestData folder; show functions work using test data.
#25 opened Nov 1, 2024 by HarkiratSohi
Turn spammR into Bioconductor package
#24 opened Nov 1, 2024 by HarkiratSohi
Functions for analyzing MERFISH data development Initial development of package
#23 opened Dec 19, 2023 by HarkiratSohi
Add functions for comparing proteomics and MERFISH data development Initial development of package
#22 opened Dec 19, 2023 by HarkiratSohi
Add a function for exporting data from the MERFISH package development Initial development of package
#19 opened Dec 19, 2023 by HarkiratSohi
Create a version of readme using brain proteomics data as an example documentation Improvements or additions to documentation
#18 opened Dec 19, 2023 by HarkiratSohi
Add functions for Network graph visualizations development Initial development of package
#8 opened Jul 7, 2023 by HarkiratSohi
Function for carrying out PCA analysis & clustering and spatial plotting of samples, color-coded by cluster color. development Initial development of package
#7 opened Jul 7, 2023 by HarkiratSohi
@HarkiratSohi
1
Provide a helper function for converting IDs of the form sp|Z|X_Y to gene names development Initial development of package
#6 opened Jul 7, 2023 by HarkiratSohi
@HarkiratSohi
Add pathway_spatialExpCompare.R development Initial development of package
#3 opened Jul 6, 2023 by HarkiratSohi
@HarkiratSohi
ProTip! Add no:assignee to see everything that’s not assigned.