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Every graph query fails to build BioPAX model, even the supplied example #12

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5xx7xx opened this issue Jan 20, 2022 · 1 comment
Open

Every graph query fails to build BioPAX model, even the supplied example #12

5xx7xx opened this issue Jan 20, 2022 · 1 comment

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@5xx7xx
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5xx7xx commented Jan 20, 2022

Trying to run graph queries, they all fail, even the supplied example of BRCA1, MDM2 fails.
The error reads "BioPAX reader failed to build a BioPAX model".
Screenshot:
image

Tried this on two separete machines, one Windows 10, one Ubuntu 18.04. I'm using Cytoscape 3.9
@jvwong
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jvwong commented Oct 23, 2024

I can reproduce similar problem:

  • Select toolbar: Apps > PathwayCommons > Search...
  • Tab: Find and Get
    • Dropdown: Pathways
    • Search query: ZNF385A
  • Summary panel
    • Select Matching pathways: Transcriptional activation of cell cycle inhibitor p21
    • Click link: Click to extract and import this network
  • Popup
    • Select BioPAX Mapping: Binary
Screenshot 2024-10-23 at 1 56 38 PM

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@jvwong @5xx7xx