pyproject.toml

[tool.poetry]
name = "pathway-abstract-classifier"
version = "0.2.1"
description = "A tool to classify articles containing biological pathway information"
authors = ["Biofactoid <support@biofactoid.org>"]
license = "MIT"
maintainers = ["Biofactoid <support@biofactoid.org>"]
readme = "README.md"
repository  = "https://github.com/PathwayCommons/pathway-abstract-classifier"
classifiers = [
    "Environment :: Console",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT No Attribution License (MIT-0)",
    "Operating System :: OS Independent",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Topic :: Scientific/Engineering :: Artificial Intelligence"
]

[tool.poetry.dependencies]
python = ">=3.8,<3.10"
tensorflow = "2.8.0"
ktrain = "0.30.0"
cached-path = "^1.1.1"
pydantic = "^1.9.0"

[tool.poetry.dev-dependencies]
streamlit = "^1.9.0"
pytest = "^7.1.2"
flake8 = "^4.0.1"
black = "^22.3.0"
pytest-cov = "^3.0.0"
pytest-mock = "^3.7.0"
mypy = "^0.950"
python-semantic-release = "^7.28.1"
pytest-datadir = "^1.3.1"

[tool.semantic_release]
version_variable = "pyproject.toml:version"
branch = "main"                             # branch to make releases of
build_command = "poetry build"              # build dists
dist_path = "dist/"                         # where to put dists
upload_to_release = true                    # auto-create GitHub release
upload_to_pypi = false                      # don't auto-upload to PyPI
remove_dist = false                         # don't remove dists
patch_without_tag = true                    # patch release by default

[tool.black]
line-length = 100
include = '\.pyi?$'
exclude = '''
(
      __pycache__
    | \btutorials\b
    | \bbuild\b
    | \.git
    | \.mypy_cache
    | \.pytest_cache
    | \.vscode
    | \.venv
    | \bdist\b
    | \bdoc\b
)
'''

[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"