Addresses missing spots_with_mates column in SRA runinfo (fix #93) #127

	name: Python Package using Conda

	on: [push]

	jobs:
	build-linux:
	runs-on: ubuntu-latest
	strategy:
	max-parallel: 5

	steps:
	- uses: actions/checkout@v4
	- name: Set up Python 3.10
	uses: actions/setup-python@v5
	with:
	python-version: '3.10'
	- name: Add conda to system path
	run: \|
	# $CONDA is an environment variable pointing to the root of the miniconda directory
	echo $CONDA/bin >> $GITHUB_PATH
	- name: Setup Conda environment
	run: \|
	conda env update --file environment.yml --name base
	- name: Install package
	run: \|
	pip install .[gsheet,webviewer]
	- name: Build shm cleanup script
	run: \|
	make -C scripts
	- name: Configure the pipeline
	run: \|
	cp example.luigi.cfg luigi.cfg
	- name: Test with pytest
	run: \|
	conda install pytest
	pytest --ignore tests/test_webviewer.py

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