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fludb - script needed for uploading NCBI influenza virus resource FASTA and metadata #6

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elginakin opened this issue Dec 1, 2024 · 0 comments
Open

fludb - script needed for uploading NCBI influenza virus resource FASTA and metadata #6

elginakin opened this issue Dec 1, 2024 · 0 comments
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@elginakin
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enhancement New feature or request help wanted Extra attention is needed

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@elginakin
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2 scripts should be prepared:

  1. upload_NCBI-flu.py - for uploading sequences from the NCBI Flu database
  2. upload_NCBI-virus.py - for uploading sequences from NCBI Virus

Both scripts should follow similar schemas to upload_gisaid.py requiring a sequences.fasta and metadata file in some flat tabular format.

Need to remember, if any additional metadata columns in the database should be needed...we'll need to update all upload and download scripts to accommodate. Better to get ahead of this.
@elginakin elginakin added enhancement New feature or request help wanted Extra attention is needed labels Dec 1, 2024
@elginakin elginakin self-assigned this Dec 1, 2024
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@elginakin