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CCSegThickness

Software Pipeline for Midsagittal Corpus Callosum Thickness Profile Processing

CCSegThickness performs fully automated pipeline for thickness profile evaluation and analysis of the human corpus callosum (CC) in 3D structural T1-weighted magnetic resonance images

The pipeline performs the following sequence of steps:

  1. Midsagittal plane extraction
  2. CC segmentation algorithm - Automated Segmentation
  3. Quality control tool - Manual Editor
  4. Thickness profile generation
  5. Statistical analysis - Group-Wise Statistical Comparison
  6. Results figure generator - Results Display

Installation

Tested in Ubuntu 16.04 LTS

git clone https://github.com/R3DDY97/CCSegThickness

cd CCSegThickness

chmod +x install.sh && sudo install .sh

or

sudo bash install.sh

cite article as:

Adamson, C., Beare, R., Walterfang, M. et al. Neuroinform (2014) 12: 595. https://doi.org/10.1007/s12021-014-9236-3