diff --git a/_pkgdown.yml b/_pkgdown.yml index c7c2596..94b8cfb 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -59,14 +59,14 @@ navbar: href: articles/adam-adtte.html - text: ADADAS - ADS-COG Analysis href: articles/adam-adadas.html - - text: ADRG - Analysis Data Reviewer's Guide + - text: ADRG - Analysis Data Reviewers Guide href: articles/adrg_website.html conferences: text: Conferences menu: - text: PHUSE SDE London href: articles/conf_phuse_sde_london.html - - text: PHARMA SUG Baltimore - Paper Index: SS-344 + - text: PHARMA SUG Baltimore Paper Index SS 344 href: https://www.pharmasug.org/us/2024/papers.html feedback: text: WG Minutes and Regulatory Feedback diff --git a/vignettes/tlf-demographic.Rmd b/vignettes/tlf-demographic.Rmd index ba4baf9..c138531 100644 --- a/vignettes/tlf-demographic.Rmd +++ b/vignettes/tlf-demographic.Rmd @@ -37,7 +37,7 @@ library(rtables) ```{r, echo = FALSE} -adsl <- read_xpt(file.path(path$adam, "adsl.xpt")) +adsl <- read_xpt("../adam/adsl.xpt") adsl_labels <- var_labels(adsl) ``` diff --git a/vignettes/tlf-efficacy.Rmd b/vignettes/tlf-efficacy.Rmd index bc02335..50fea9f 100644 --- a/vignettes/tlf-efficacy.Rmd +++ b/vignettes/tlf-efficacy.Rmd @@ -36,8 +36,8 @@ library(emmeans) ``` ```{r, message = FALSE, echo = FALSE} -adsl <- read_xpt(file.path(path$adam, "adsl.xpt")) -adlb <- read_xpt(file.path(path$adam, "adlbc.xpt")) +adsl <- read_xpt("../adam/adsl.xpt") +adlb <- read_xpt("../adam/adlbc.xpt") ``` ```{r, message = FALSE, echo = FALSE} diff --git a/vignettes/tlf-kmplot.Rmd b/vignettes/tlf-kmplot.Rmd index 7b81c31..1d9cf46 100644 --- a/vignettes/tlf-kmplot.Rmd +++ b/vignettes/tlf-kmplot.Rmd @@ -39,8 +39,8 @@ library(visR) ```{r, echo = FALSE, message = FALSE} -adsl <- read_xpt(file.path(path$adam, "adsl.xpt")) -adtte <- read_xpt(file.path(path$adam, "adtte.xpt")) +adsl <- read_xpt("../adam/adsl.xpt") +adtte <- read_xpt("../adam/adtte.xpt") ``` ```{r, echo = FALSE, message = FALSE} diff --git a/vignettes/tlf-primary.Rmd b/vignettes/tlf-primary.Rmd index 5eb1234..3ed5ee3 100644 --- a/vignettes/tlf-primary.Rmd +++ b/vignettes/tlf-primary.Rmd @@ -37,8 +37,8 @@ options(huxtable.add_colnames = FALSE) ``` ```{r, echo = FALSE, message = FALSE} -adas <- haven::read_xpt(file.path(path$adam, "adadas.xpt")) -adsl <- haven::read_xpt(file.path(path$adam, "adsl.xpt")) +adas <- haven::read_xpt("../adam/adadas.xpt") +adsl <- haven::read_xpt("../adam/adsl.xpt") ``` ```{r, echo = FALSE, message = FALSE} @@ -92,7 +92,7 @@ sum_data <- t %>% ``` ```{r, echo = FALSE, message = FALSE} -model_portion <- efficacy_models(adas, "CHG", 24) +model_portion <- pilot3utils::efficacy_models(adas, "CHG", 24) ``` ```{r, echo = FALSE, message = FALSE}