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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(EnsDbLite)
export(ErccDbLite)
export(GCcontent)
export(RepDbLite)
export(TxDbLite)
export(chrs)
export(colAsVector)
export(createAnnotationPackage)
export(ensDbLiteFromFasta)
export(ensDbLiteMetadata)
export(erccDbLiteFromFasta)
export(fetchFromEnsembl)
export(findDupes)
export(genesBy)
export(getAnnotationType)
export(getDupeSeq)
export(getEntrezIDs)
export(getFastaStub)
export(getGCcontent)
export(getHugoCache)
export(getMostRecentCacheBuild)
export(getOrgDetails)
export(getOrganismAbbreviation)
export(getReactomeCache)
export(getReactomeUrl)
export(getSupportedAbbreviations)
export(getSymbols)
export(getTxDbLiteName)
export(idStub)
export(indexIfNoneFound)
export(loadReactome)
export(makeEnsDbLitePkg)
export(makeErccDbLitePkg)
export(makeRepDbLitePkg)
export(mapHugo)
export(mapToReactome)
export(reactomeSets)
export(repDbLiteFromFasta)
export(repDbLiteFromMouseFasta)
export(str2vec)
export(strpop)
export(strpush)
export(strshift)
export(strunshift)
exportClasses(EnsDbLite)
exportClasses(ErccDbLite)
exportClasses(RepDbLite)
exportClasses(TxDbLite)
exportMethods(dbconn)
exportMethods(genesBy)
exportMethods(transcriptsBy)
import(Biobase)
import(DBI)
import(GenomeInfoDb)
import(GenomicRanges)
import(OrganismDbi)
import(RSQLite)
import(ensembldb)
import(methods)
import(utils)
importFrom(Biobase,createPackage)
importFrom(BiocGenerics,paste)
importFrom(Biostrings,alphabetFrequency)
importFrom(Biostrings,fasta.seqlengths)
importFrom(Biostrings,getSeq)
importFrom(Biostrings,readDNAStringSet)
importFrom(DBI,dbConnect)
importFrom(DBI,dbDisconnect)
importFrom(DBI,dbDriver)
importFrom(DBI,dbGetQuery)
importFrom(DBI,dbListTables)
importFrom(DBI,dbWriteTable)
importFrom(GenomeInfoDb,genome)
importFrom(GenomeInfoDb,seqlevels)
importFrom(GenomeInfoDb,seqlevelsStyle)
importFrom(GenomeInfoDb,seqnames)
importFrom(IRanges,IRanges)
importFrom(Rsamtools,FaFile)
importFrom(Rsamtools,index)
importFrom(Rsamtools,indexFa)
importFrom(Rsamtools,path)
importFrom(Rsamtools,scanFa)
importFrom(Rsamtools,scanFaIndex)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,Rle)
importFrom(biomaRt,getBM)
importFrom(biomaRt,useEnsembl)
importFrom(ensembldb,metadata)
importFrom(stats,aggregate)
importFrom(stats,median)