From 48cc409747cc7299c315ed673229703af28209eb Mon Sep 17 00:00:00 2001 From: Stian Soiland-Reyes Date: Mon, 8 Jan 2024 13:52:28 +0000 Subject: [PATCH] more stuff --- docs/in-use/datalake.md | 91 ++++++++++++++++++++++++++++++++++++++++ docs/in-use/desci.md | 84 +++++++++++++++++++++++++++++++++++++ docs/in-use/wildlive.md | 91 ++++++++++++++++++++++++++++++++++++++++ docs/in-use/zbmed.md | 93 +++++++++++++++++++++++++++++++++++++++++ 4 files changed, 359 insertions(+) create mode 100644 docs/in-use/datalake.md create mode 100644 docs/in-use/desci.md create mode 100644 docs/in-use/wildlive.md create mode 100644 docs/in-use/zbmed.md diff --git a/docs/in-use/datalake.md b/docs/in-use/datalake.md new file mode 100644 index 00000000..49aff07a --- /dev/null +++ b/docs/in-use/datalake.md @@ -0,0 +1,91 @@ +--- +title: KEOD Data Lake +parent: RO-Crate In Use +--- + + +# KEOD Data Lake + + +Knowledge Enhanced Digital Objects ([KEOD](https://github.com/luoyu357/KEDODataLake)) is an experimental approach of building a data lake using a combination of knowledge graphs, RO-Crate and PID records. + +A KEDO PID is a Handle that identifies a KEDO Object, described using a KEDO RO-Crate. This crate again has \emph{internal RO-Crate}s as parts, which records a combination of _Features_ and _Insights_. The distinction is that features are mainly fixed at digital object creation and considered directly describing the object's nature, while insights can be discovered later from further processing and linkage. + +Files in a KEDO RO-Crate are stored locally, and each recorded with a Handle PID within the crate. In this KEOD setup of multiple graphs then form a single knowledge unit. + +## Resources + +* Yu Luo (2022): [Knowledge enhanced digital objects](https://www.proquest.com/docview/2763290077) (Doctoral dissertation, Indiana University) +* Conference paper: +* Source: + + diff --git a/docs/in-use/desci.md b/docs/in-use/desci.md new file mode 100644 index 00000000..45319eb1 --- /dev/null +++ b/docs/in-use/desci.md @@ -0,0 +1,84 @@ +--- +title: DeSci Nodes +parent: RO-Crate In Use +--- + + +# DeSci Nodes + +The [DeSci Nodes](https://docs.desci.com/) system has been developed by the [DeSci foundation](https://www.descifoundation.org/), where [dPID](https://www.dpid.org/) (distibuted Persistent Identifier) act as an overlay of the Interplanetary File System (IPFS). + +Users can interact with the DeSci platform for building and publishing Research Objects, and the [DeSci metadata](https://docs.desci.com/learn/open-state-repository/metadata) are exposed as a [detached RO-Crate](https://www.researchobject.org/ro-crate/1.2-DRAFT/structure.html\#detached-ro-crate) with IPFS references (see [example dPID](https://beta.dpid.org/46?jsonld)). + +DeSci Nodes have documented a [FAIR Implementation Profile](https://docs.desci.com/learn/fair-data/fair-compliance/desci-nodes-fip) (FIP) documenting compliance with FAIR principles. + + diff --git a/docs/in-use/wildlive.md b/docs/in-use/wildlive.md new file mode 100644 index 00000000..075e33bc --- /dev/null +++ b/docs/in-use/wildlive.md @@ -0,0 +1,91 @@ +--- +title: Wildlive portal +parent: RO-Crate In Use +--- + + +# Senckenberg Wildlive data portal + +Senckenberg's [Wildlive data portal](https://wildlive.senckenberg.de/), is a repository and analysis platform for biodiversity monitoring. + +Using [FAIR Signposting](https://signposting.org/FAIR/), the images from cameras monitoring wildlife are also navigatable as FAIR Digital Objects using RO-Crate to expose the metadata. + +The portal uses [detached RO-Crate](https://www.researchobject.org/ro-crate/1.2-DRAFT/structure.html#detached-ro-crate) as the images are served over separate API calls for seaprate digital objects. At the same time, the use of Handles for persistent identifiers have been explored, as a demonstrator of a hybrid Web/Handle FDO based on the . + +## Resources + +* Slides: https://slides.com/soilandreyes/2023-11-13-bh2023-fdo#/3 +* Biohackathon preprint: https://github.com/ResearchObject/bh2023-enabling-fair-digital-objects/blob/main/paper/paper.md +* Example handle: https://hdl.handle.net/21.T11998/wildlive.7df91e6d148a386cc674 +* Example detached RO-Crate: https://wildlive.senckenberg.de/api/call?objectId=wildlive/7df91e6d148a386cc674&method=getAsROCrate + + diff --git a/docs/in-use/zbmed.md b/docs/in-use/zbmed.md new file mode 100644 index 00000000..c02b0b26 --- /dev/null +++ b/docs/in-use/zbmed.md @@ -0,0 +1,93 @@ +--- +title: ZBMed SemTec web pages +parent: RO-Crate In Use +--- + + +# ZBMed + +The [Semantic Technologies](https://zbmed-semtec.github.io/) (SemTec) team in [ZB MED](https://www.zbmed.de/en/) uses GitHub pages to share research projects and corresponding research artefacts/outcomes. + +Using [FAIR Signposting](https://signposting.org/FAIR/), Bioschemas and RO-Crate this is an example of a lightweight deployment of FAIR Digital Objects (FDOs). + +This work was supported by a [FAIR-IMPACT support action](https://fair-impact.eu/1st-open-call-support-closed) and developed further at the ELIXIR Biohackathon 2023. + + +## Resources + +* Slides: https://slides.com/soilandreyes/2023-11-13-bh2023-fdo#/3 +* Biohackathon preprint: https://github.com/ResearchObject/bh2023-enabling-fair-digital-objects/blob/main/paper/paper.md +* Example page w/ RO-Crate: https://zbmed-semtec.github.io/projects/2022_maSMP/ +* Example RO-Crate: https://zbmed-semtec.github.io/metadata/projects/2022_maSMP/ro-crate-metadata.json +* Example RO-Crate preview: https://zbmed-semtec.github.io/metadata/projects/2022_maSMP/ro-crate-preview.html + +