From 2ac0a349a40afac5600ce004e5b7a17d7fca5e44 Mon Sep 17 00:00:00 2001
From: Eli Chadwick <eli.chadwick@manchester.ac.uk>
Date: Wed, 27 Nov 2024 13:04:35 +0000
Subject: [PATCH 1/3] add ReXAFS use case

---
 docs/assets/img/ReXAFS.png        | Bin 0 -> 24388 bytes
 docs/pages/use_cases/.template.md |   2 +-
 docs/pages/use_cases/rexafs.md    |  53 ++++++++++++++++++++++++++++++
 3 files changed, 54 insertions(+), 1 deletion(-)
 create mode 100644 docs/assets/img/ReXAFS.png
 create mode 100644 docs/pages/use_cases/rexafs.md

diff --git a/docs/assets/img/ReXAFS.png b/docs/assets/img/ReXAFS.png
new file mode 100644
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diff --git a/docs/pages/use_cases/.template.md b/docs/pages/use_cases/.template.md
index 2b6dc9f4..d275d279 100644
--- a/docs/pages/use_cases/.template.md
+++ b/docs/pages/use_cases/.template.md
@@ -35,7 +35,7 @@ Example uses RO-Crate for ... as ....
 
 Example works with Project X, .....
 
-![Example screenshot with RO-Crate(../assets/img/example-screenshot.png)
+![Example screenshot with RO-Crate](../assets/img/example-screenshot.png)
 
 
 ## RO-Crate in Example
diff --git a/docs/pages/use_cases/rexafs.md b/docs/pages/use_cases/rexafs.md
new file mode 100644
index 00000000..6fc2655b
--- /dev/null
+++ b/docs/pages/use_cases/rexafs.md
@@ -0,0 +1,53 @@
+---
+page_id: rexafs
+title: Reproducible XAFS Analyses
+description: Reproducible XAFS Analyses publishes reproducible X-ray absorption fine structure (XAFS) analyses using Galaxy RO-Crates, targeting the area of Catalysis.
+url: https://zenodo.org/communities/rexas/records
+image: ReXAFS.png
+domains: [chemistry] # should match item(s) in pages/domains
+tasks: [research, curation, data_management] # should match item(s) in pages/tasks
+roles: [researcher, data_steward, data_analyst, software_developer, repository_manager] # should match item(s) in pages/roles
+---
+<!--
+   Copyright 2019-2022 RO-Crate contributors
+   <https://github.com/ResearchObject/ro-crate/graphs/contributors>
+
+   Licensed under the Apache License, Version 2.0 (the "License");
+   you may not use this file except in compliance with the License.
+   You may obtain a copy of the License at
+
+       http://www.apache.org/licenses/LICENSE-2.0
+
+   Unless required by applicable law or agreed to in writing, software
+   distributed under the License is distributed on an "AS IS" BASIS,
+   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+   See the License for the specific language governing permissions and
+   limitations under the License.
+-->
+
+# Reproducible XAFS Analyses
+
+![ReXAFS logo](../assets/img/ReXAFS.png)
+
+The [Reproducible XAFS Analyses Zenodo community](https://zenodo.org/communities/rexas/records) groups Galaxy RO-Crates containing workflows and data for the reproduction of published papers which contain X-ray absorption fine structure (XAFS) analyses.
+
+As of November 2024, the team has reproduced published results from nine papers in the area of Catalysis. The original analyses were reproduced using X-ray absorption spectroscopy (XAS) Galaxy tools developed by the [Scientific Computing Department](https://www.scd.stfc.ac.uk/Pages/home.aspx) at [STFC](https://www.ukri.org/councils/stfc/), as part of the [PSDI](https://www.psdi.ac.uk) project.
+
+RO-Crates exported from Galaxy have been published to the Zenodo community as part of the research data submitted for the paper: **Use of scientific workflows to support the processing and analysis of catalysis research data from XAFS experiments** (Under review). 
+
+The team will keep on adding more RO-Crates from examples relevant to the catalysis domain. 
+
+Tutorials have also been developed to train researchers in reproducing XAFS analyses using Galaxy and RO-Crate (see resources below).
+
+## Resources
+
+* [Reproducible XAFS Analyses on Zenodo](https://zenodo.org/communities/rexas/records)
+* [Tutorial: Importing an RO-Crate into Galaxy](https://xerte.cardiff.ac.uk/play_22519) with an XAFS example
+
+## Keywords 
+
+XAFS reproducibility, Galaxy RO-Crates, Catalyst Characterisation
+
+## Publications
+
+**Use of scientific workflows to support the processing and analysis of catalysis research data from XAFS experiments** (under review, not yet public)

From c1088cd29bac007494a3cba64a2a452f159e33eb Mon Sep 17 00:00:00 2001
From: Eli Chadwick <eli.chadwick@manchester.ac.uk>
Date: Wed, 27 Nov 2024 14:02:20 +0000
Subject: [PATCH 2/3] correct image paths

---
 docs/pages/use_cases/.template.md | 4 ++--
 docs/pages/use_cases/rexafs.md    | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/docs/pages/use_cases/.template.md b/docs/pages/use_cases/.template.md
index d275d279..73e39bd9 100644
--- a/docs/pages/use_cases/.template.md
+++ b/docs/pages/use_cases/.template.md
@@ -27,7 +27,7 @@ roles: [page_id] # should match item(s) in pages/roles
 
 # Example
 
-[![Example logo](/assets/img/example.svg)](https://example.org/)
+[![Example logo](../../assets/img/example.svg)](https://example.org/)
 
 [Example](https://reliance.rohub.org/) (EXAMPLE-ACRONYM), is a...
 
@@ -35,7 +35,7 @@ Example uses RO-Crate for ... as ....
 
 Example works with Project X, .....
 
-![Example screenshot with RO-Crate](../assets/img/example-screenshot.png)
+![Example screenshot with RO-Crate](../../assets/img/example-screenshot.png)
 
 
 ## RO-Crate in Example
diff --git a/docs/pages/use_cases/rexafs.md b/docs/pages/use_cases/rexafs.md
index 6fc2655b..49924791 100644
--- a/docs/pages/use_cases/rexafs.md
+++ b/docs/pages/use_cases/rexafs.md
@@ -27,7 +27,7 @@ roles: [researcher, data_steward, data_analyst, software_developer, repository_m
 
 # Reproducible XAFS Analyses
 
-![ReXAFS logo](../assets/img/ReXAFS.png)
+![ReXAFS logo](../../assets/img/ReXAFS.png)
 
 The [Reproducible XAFS Analyses Zenodo community](https://zenodo.org/communities/rexas/records) groups Galaxy RO-Crates containing workflows and data for the reproduction of published papers which contain X-ray absorption fine structure (XAFS) analyses.
 

From cc9a0e9195ae799dadee9ac841555f1720c6c15f Mon Sep 17 00:00:00 2001
From: Eli Chadwick <eli.chadwick@manchester.ac.uk>
Date: Thu, 28 Nov 2024 15:32:26 +0000
Subject: [PATCH 3/3] updates

---
 docs/pages/use_cases/rexafs.md | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/docs/pages/use_cases/rexafs.md b/docs/pages/use_cases/rexafs.md
index 49924791..72948e70 100644
--- a/docs/pages/use_cases/rexafs.md
+++ b/docs/pages/use_cases/rexafs.md
@@ -27,22 +27,20 @@ roles: [researcher, data_steward, data_analyst, software_developer, repository_m
 
 # Reproducible XAFS Analyses
 
-![ReXAFS logo](../../assets/img/ReXAFS.png)
-
 The [Reproducible XAFS Analyses Zenodo community](https://zenodo.org/communities/rexas/records) groups Galaxy RO-Crates containing workflows and data for the reproduction of published papers which contain X-ray absorption fine structure (XAFS) analyses.
 
-As of November 2024, the team has reproduced published results from nine papers in the area of Catalysis. The original analyses were reproduced using X-ray absorption spectroscopy (XAS) Galaxy tools developed by the [Scientific Computing Department](https://www.scd.stfc.ac.uk/Pages/home.aspx) at [STFC](https://www.ukri.org/councils/stfc/), as part of the [PSDI](https://www.psdi.ac.uk) project.
+As of November 2024, the team has reproduced published results from nine papers in the area of Catalysis. The original analyses were reproduced using X-ray absorption spectroscopy (XAS) Galaxy tools developed by the [Scientific Computing Department](https://www.scd.stfc.ac.uk/Pages/home.aspx) at [STFC](https://www.ukri.org/councils/stfc/) as part of the [PSDI](https://www.psdi.ac.uk) project, with the [UK Catalysis Hub](https://www.ukcatalysishub.org) providing the use cases and gathering the data used.
 
 RO-Crates exported from Galaxy have been published to the Zenodo community as part of the research data submitted for the paper: **Use of scientific workflows to support the processing and analysis of catalysis research data from XAFS experiments** (Under review). 
 
 The team will keep on adding more RO-Crates from examples relevant to the catalysis domain. 
 
-Tutorials have also been developed to train researchers in reproducing XAFS analyses using Galaxy and RO-Crate (see resources below).
+[Tutorials](https://xerte.cardiff.ac.uk/play_22679#PG1732791153760) have also been developed to train researchers in reproducing XAFS analyses using Galaxy and RO-Crate.
 
 ## Resources
 
 * [Reproducible XAFS Analyses on Zenodo](https://zenodo.org/communities/rexas/records)
-* [Tutorial: Importing an RO-Crate into Galaxy](https://xerte.cardiff.ac.uk/play_22519) with an XAFS example
+* [PSDI tutorials on using Galaxy RO-Crates](https://xerte.cardiff.ac.uk/play_22679#PG1732791153760)
 
 ## Keywords 
 
@@ -51,3 +49,5 @@ XAFS reproducibility, Galaxy RO-Crates, Catalyst Characterisation
 ## Publications
 
 **Use of scientific workflows to support the processing and analysis of catalysis research data from XAFS experiments** (under review, not yet public)
+
+![ReXAFS logo](../../assets/img/ReXAFS.png)