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YOBOKOP UI returning bad response for certain yeast nodes #217

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Woozl opened this issue May 16, 2024 · 1 comment
Open

YOBOKOP UI returning bad response for certain yeast nodes #217

Woozl opened this issue May 16, 2024 · 1 comment
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@Woozl
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bug Something isn't working UI

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@Woozl
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Woozl commented May 16, 2024

We're encountering an issue with yobokop.apps.renci.org/question-builder when querying for E1BSW0_CHICK AHA1, activator of heat shock 90kDa 2 (yeast) (trembl) related to Named Thing.

query 
{
  "message": {
    "query_graph": {
      "nodes": {
        "n0": {
          "name": "E1BSW0_CHICK AHA1, activator of heat shock 90kDa 2 (yeast) (trembl)",
          "categories": [
            "biolink:Protein",
            "biolink:GeneProductMixin",
            "biolink:Polypeptide",
            "biolink:ChemicalEntityOrGeneOrGeneProduct",
            "biolink:ChemicalEntityOrProteinOrPolypeptide",
            "biolink:BiologicalEntity",
            "biolink:ThingWithTaxon",
            "biolink:NamedThing",
            "biolink:Entity",
            "biolink:GeneOrGeneProduct",
            "biolink:MacromolecularMachineMixin"
          ],
          "ids": [
            "UniProtKB:E1BSW0"
          ]
        },
        "n1": {
          "categories": [
            "biolink:NamedThing"
          ],
          "name": "Named Thing"
        }
      },
      "edges": {
        "e0": {
          "subject": "n0",
          "object": "n1",
          "predicates": [
            "biolink:related_to"
          ]
        }
      }
    }
  }
}

For just this query, the UI endpoint (POST https://yobokop.apps.renci.org/question-builder/api/quick_answer/?ara=robokop) returns

<html>
<head><title>403 Forbidden</title></head>
<body>
<center><h1>403 Forbidden</h1></center>
<hr><center>nginx</center>
</body>
</html>
<!-- a padding to disable MSIE and Chrome friendly error page -->
<!-- a padding to disable MSIE and Chrome friendly error page -->
<!-- a padding to disable MSIE and Chrome friendly error page -->
<!-- a padding to disable MSIE and Chrome friendly error page -->
<!-- a padding to disable MSIE and Chrome friendly error page -->
<!-- a padding to disable MSIE and Chrome friendly error page -->

and never hits the backend. This seems like a deployment/ingress issue, but most other queries work fine. We're wondering if something about it is triggering a firewall rule or similar issue.
@Woozl Woozl added the UI label May 16, 2024
@Woozl Woozl self-assigned this May 16, 2024
@hina-shah hina-shah added the bug Something isn't working label Oct 1, 2024
@hina-shah
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image
David looked at this, and predicts there might be an issue with qgraph or firewall/qgraph configuration. It only happens with that particular query, and happens from Robokop UI as well.

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