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Introduction to Genome Annotation - May 2017 |
Held in Uppsala May 9th-11th, 2017.
Pre-course material
Uppmax login instructions
Schedule
Map over Uppsala
Map over Uppsala biomedical center, BMC
Travel Info
TO DO AND EAT in Uppsala
Restaurant Meza
Linux cheat sheet
UPPMAX cheat sheet
Mac keyboard layout
Mac keyboard layouts
IGV (Integrative Genomics Viewer) Home
Samtools Home
BWA Home
GATK Home
SeqAnswers - Next-generation sequencing forum
Trinity
Cufflinks
Satuma/Spines
Allpaths-lg
BLAT
BLAST
A good explanation of the FASTQ format can be found over at the MAQ web page. It also includes simple Perl code to encode and decode the quality scores.