-
Notifications
You must be signed in to change notification settings - Fork 1
/
functions.py
1289 lines (1240 loc) · 57.1 KB
/
functions.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
# Functions for osprey_worker.py
from datetime import datetime
import os
import stat
import subprocess
import xmltodict
import sys
import json
import requests
import pandas as pd
from random import randint
import glob
from PIL import Image
from pathlib import Path
import shutil
import locale
import itertools
# Zoom images
import si_deepzoom as deepzoom
# For MD5
import hashlib
# Parallel
import multiprocessing
from multiprocessing import Pool
# Get settings and queries
import settings
# Remove DecompressionBombWarning due to large files
# by using a large threshold
# https://github.com/zimeon/iiif/issues/11
Image.MAX_IMAGE_PIXELS = 1000000000
def check_requirements(program):
"""
Check if required programs are installed
"""
# From https://stackoverflow.com/a/34177358
from shutil import which
return which(program) is not None
def compress_log():
"""
Compress log files
"""
filecheck_dir = os.path.dirname(__file__)
os.chdir('{}/logs'.format(filecheck_dir))
folders = []
for entry in os.scandir('.'):
if entry.is_dir():
folders.append(entry.path)
# No folders found
if len(folders) == 0:
return None
# Compress each folder
for folder in folders:
subprocess.run(["zip", "-r", "{}.zip".format(folder), folder])
shutil.rmtree(folder)
os.chdir(filecheck_dir)
return True
def jhove_validate(file_path):
"""
Validate the file with JHOVE
"""
# Where to write the results
xml_file = "{}/jhove_{}.xml".format(settings.tmp_folder, randint(100, 100000))
if os.path.isfile(xml_file):
os.unlink(xml_file)
# Setting JHOVE module
file_extension = Path(file_path).suffix.lower()
if file_extension == ".tif" or file_extension == ".tiff" or file_extension == ".dng":
jhove_module = "TIFF-hul"
elif file_extension == ".jpg" or file_extension == ".jpeg":
jhove_module = "JPEG-hul"
elif file_extension == ".jp2":
jhove_module = "JPEG2000-hul"
else:
error_info = "jhove_error - extension: {}".format(file_extension, )
return 1, error_info
# Run JHOVE
p = subprocess.Popen([settings.jhove, "-m", jhove_module, "-h", "xml", "-o", xml_file, file_path],
stdout=subprocess.PIPE,
stderr=subprocess.PIPE)
(out, err) = p.communicate()
# Open and read the results xml
try:
with open(xml_file) as fd:
doc = xmltodict.parse(fd.read())
except Exception as e:
# Try again
if os.path.isfile(xml_file):
os.unlink(xml_file)
p = subprocess.Popen([settings.jhove, "-m", jhove_module, "-h", "xml", "-o", xml_file, file_path],
stdout=subprocess.PIPE,
stderr=subprocess.PIPE)
(out, err) = p.communicate()
# Open and read the results xml
try:
with open(xml_file) as fd:
doc = xmltodict.parse(fd.read())
except Exception as e:
error_msg = "Could not find result file from JHOVE ({}) ({}) | {} - {}".format(xml_file, e, out, err)
check_results = 1
check_info = error_msg
return check_results, check_info
if os.path.isfile(xml_file):
os.unlink(xml_file)
# Get file status
file_status = doc['jhove']['repInfo']['status']
jhove_results = out.decode('latin-1')
if file_status == "Well-Formed and valid":
check_results = 0
check_info = jhove_results
else:
check_results = 1
# If the only error is with the WhiteBalance, ignore
# Issue open at Github, seems will be fixed in future release
# https://github.com/openpreserve/jhove/issues/364
if type(doc['jhove']['repInfo']['messages']['message']) is dict:
# Single message
if doc['jhove']['repInfo']['messages']['message']['#text'][:31] == "WhiteBalance value out of range":
check_results = 0
file_status = doc['jhove']['repInfo']['messages']['message']['#text']
elif doc['jhove']['repInfo']['messages']['message']['#text'][:20] == "Unknown TIFF IFD tag":
check_results = 0
file_status = doc['jhove']['repInfo']['messages']['message']['#text']
else:
check_results = 1
check_info = jhove_results
file_status = doc['jhove']['repInfo']['messages']['message']['#text']
else:
if len(doc['jhove']['repInfo']['messages']['message']) == 2:
if doc['jhove']['repInfo']['messages']['message'][0]['#text'][:20] == "Unknown TIFF IFD tag" and doc['jhove']['repInfo']['messages']['message'][1]['#text'][:31] == "WhiteBalance value out of range":
check_results = 0
f_stat = []
for msg in doc['jhove']['repInfo']['messages']['message']:
f_stat.append(msg['#text'])
file_status = ", ".join(f_stat)
else:
check_results = 1
check_info = jhove_results
check_info = "{}; {}".format(file_status, jhove_results)
return check_results, check_info
def magick_validate(file_id, filename, logger, paranoid=False):
"""
Validate the file with Imagemagick
"""
if paranoid:
if settings.magick is None:
p = subprocess.Popen(['identify', '-verbose', '-regard-warnings', filename], stdout=subprocess.PIPE,
stderr=subprocess.PIPE, env={"MAGICK_THREAD_LIMIT": "1"})
else:
p = subprocess.Popen([settings.magick, '-verbose', '-regard-warnings', filename], stdout=subprocess.PIPE,
stderr=subprocess.PIPE, env={"MAGICK_THREAD_LIMIT": "1"})
else:
if settings.magick is None:
p = subprocess.Popen(['identify', '-verbose', filename], stdout=subprocess.PIPE,
stderr=subprocess.PIPE, env={"MAGICK_THREAD_LIMIT": "1"})
else:
p = subprocess.Popen([settings.magick, '-verbose', filename], stdout=subprocess.PIPE,
stderr=subprocess.PIPE, env={"MAGICK_THREAD_LIMIT": "1"})
(out, err) = p.communicate()
if p.returncode == 0:
magick_identify = 0
else:
magick_identify = 1
logger.error("magick_out: {} {}".format(file_id, out.decode('UTF-8')))
logger.error("magick_err: {} {}".format(file_id, err.decode('UTF-8')))
magick_identify_info = out + err
check_results = magick_identify
check_info = magick_identify_info.decode('latin-1')
return check_results, check_info
def pil_validate(file_id, filename, logger):
"""
Validate the file with PIL
"""
# Based on https://opensource.com/article/17/2/python-tricks-artists
check_results = 0
check_info = "File {} ({}) is a valid image".format(filename, file_id)
try:
im = Image.open(filename)
im.verify()
except (IOError, SyntaxError) as e:
check_results = 1
check_info = "File is not a valid image"
logger.error("pil_validate error: {} ({})".format(filename, file_id))
return check_results, check_info
def check_sequence(filename, folder_info, sequence, sequence_split):
filename_stem = Path(filename).stem
file_id = None
for file in folder_info['files']:
if file['file_name'] == filename_stem:
file_id = file['file_id']
file_info = file
break
if file_id is None:
# Something is wrong
check_results = 1
check_info = "file_id not found for {}".format(filename)
return (file_id, check_results, check_info)
file_suffix = filename_stem.split(sequence_split)
file_wo_suffix = file_suffix[0:len(file_suffix) - 1]
file_wo_suffix = '_'.join(file_wo_suffix)
file_suffix = file_suffix[len(file_suffix) - 1]
# Found last in sequence
if file_suffix == sequence[len(sequence) - 1]:
# End of sequence
check_results = 0
check_info = "File is the first one in the sequence"
return (file_id, check_results, check_info)
for i in range(len(sequence)):
if file_suffix == sequence[i]:
next_in_seq = sequence[i + 1]
next_filename_stem = "{}{}{}".format(file_wo_suffix, sequence_split, next_in_seq)
for file in folder_info['files']:
if file['file_name'] == next_filename_stem:
check_results = 0
check_info = "Next file in sequence ({}) found".format(next_filename_stem)
return (file_id, check_results, check_info)
check_results = 1
check_info = "Next file in sequence was not found"
return (file_id, check_results, check_info)
def sequence_validate(filename, folder_info):
"""
Validate that a suffix sequence is not missing items
"""
sequence = settings.sequence
sequence_split = settings.sequence_split
file_id, check_results, check_info = check_sequence(filename, folder_info, sequence, sequence_split)
file_check = 'sequence'
payload = {'type': 'file',
'property': 'filechecks',
'folder_id': folder_info['folder_id'],
'file_id': file_id,
'api_key': settings.api_key,
'file_check': file_check,
'value': check_results,
'check_info': check_info
}
r = requests.post('{}/api/update/{}'.format(settings.api_url, settings.project_alias), data=payload)
query_results = json.loads(r.text.encode('utf-8'))
if query_results["result"] is not True:
# logger.error("API Returned Error: {}".format(query_results))
# logger.error("Request: {}".format(str(r.request)))
# logger.error("Headers: {}".format(r.headers))
# logger.error("Payload: {}".format(payload))
return False
return True
def tif_compression(file_path):
"""
Check if the image has LZW compression
"""
img = Image.open(file_path)
check_info = img.info['compression']
if check_info == 'tiff_lzw':
check_results = 0
else:
check_results = 1
# return True
return check_results, check_info
def tifpages(file_path):
"""
Check if TIF has multiple pages using Pillow
"""
img = Image.open(file_path)
no_pages = img.n_frames
if no_pages == 1:
check_results = 0
else:
check_results = 1
check_info = "No. of pages: {}".format(no_pages)
# return True
return check_results, check_info
def get_file_exif(filename):
"""
Extract the EXIF info from the RAW file
"""
p = subprocess.Popen([settings.exiftool, '-j', '-L', '-a', '-U', '-u', '-D', '-G1', filename],
stdout=subprocess.PIPE, stderr=subprocess.PIPE)
(out, err) = p.communicate()
exif_info = out
return exif_info
def get_filemd5(filepath, logger):
"""
Get MD5 hash of a file
"""
md5_hash = hashlib.md5()
if os.path.isfile(filepath):
with open(filepath, "rb") as f:
# Read and update hash in chunks of 4K
for byte_block in iter(lambda: f.read(4096), b""):
md5_hash.update(byte_block)
file_md5 = md5_hash.hexdigest()
else:
file_md5 = ""
return file_md5
def file_pair_check(file_id, filename, derivative_path, derivative_type):
"""
Check if a file has a pair (main + raw)
"""
file_stem = Path(filename).stem
# Check if file pair is present
derivative_file = glob.glob("{}/{}.*".format(derivative_path, file_stem))
if len(derivative_file) == 1:
derivative_file = derivative_file[0]
file_pair = 0
file_pair_info = "Raw file {} found for {} ({})".format(Path(derivative_file).name, filename, file_id)
elif len(derivative_file) == 0:
derivative_file = None
# Raw file is missing
file_pair = 1
file_pair_info = "Missing raw file for {} ({})".format(filename, file_id)
else:
derivative_file = None
# Raw file is missing
file_pair = 1
file_pair_info = "Multiple raw files for {} ({})".format(filename, file_id)
return file_pair, file_pair_info, derivative_file
def jpgpreview(file_id, folder_id, file_path, logger):
"""
Create preview image
"""
if settings.jpg_previews == "":
logger.error("JPG preview folder is not set in settings file")
sys.exit(1)
if settings.jpg_previews_free != None:
disk_check = shutil.disk_usage(settings.jpg_previews)
if (disk_check.free / disk_check.total) < settings.jpg_previews_free:
logger.error("JPG storage location is running out of space ({}%) - {}".format(
round(disk_check.free / disk_check.total, 4) * 100,
settings.jpg_previews))
sys.exit(1)
preview_file_path = "{}/folder{}".format(settings.jpg_previews, str(folder_id))
preview_image = "{}/{}.jpg".format(preview_file_path, file_id)
preview_image_160 = "{}/160/{}.jpg".format(preview_file_path, file_id)
preview_image_600 = "{}/600/{}.jpg".format(preview_file_path, file_id)
preview_image_1200 = "{}/1200/{}.jpg".format(preview_file_path, file_id)
# Create subfolder if it doesn't exists
os.makedirs(preview_file_path, exist_ok=True)
# Other sizes
for width in [160, 600, 1200]:
resized_preview_file_path = "{}/{}".format(preview_file_path, width)
os.makedirs(resized_preview_file_path, exist_ok=True)
# Check if preview exist
# if os.path.isfile(preview_image) and os.path.isfile(preview_image_1200) and \
# os.path.isfile(preview_image_160) and os.path.isfile(preview_image_600):
# logger.info("Preview images of {} exist".format(file_id))
# return True
img = Image.open(file_path)
# if settings.previews_size == "full":
# Save full size by default
original_profile = img.info.get("icc_profile")
img.save(preview_image, 'jpeg', icc_profile=original_profile, quality=100, optimize=True)
if os.path.isfile(preview_image) is False:
logger.error("File:{}|msg:{}".format(file_path))
sys.exit(1)
img = Image.open(file_path)
# 160
width = 160
width_o, height_o = img.size
height = round(height_o * (width / width_o))
newsize = (width, height)
im1 = img.resize(newsize)
im1.save(preview_image_160, 'jpeg', icc_profile=original_profile, quality=100, optimize=True)
if os.path.isfile(preview_image_160) is False:
logger.error("File:{}|msg:{}".format(file_path))
sys.exit(1)
# 600
width = 600
height = round(height_o * (width / width_o))
newsize = (width, height)
im1 = img.resize(newsize)
im1.save(preview_image_600, 'jpeg', icc_profile=original_profile, quality=100, optimize=True)
if os.path.isfile(preview_image_600) is False:
logger.error("File:{}|msg:{}".format(file_path))
sys.exit(1)
# 1200
width = 1200
height = round(height_o * (width / width_o))
newsize = (width, height)
im1 = img.resize(newsize)
im1.save(preview_image_1200, 'jpeg', icc_profile=original_profile, quality=100, optimize=True)
if os.path.isfile(preview_image_1200) is False:
logger.error("File:{}|msg:{}".format(file_path))
sys.exit(1)
return
def jpgpreview_zoom(file_id, folder_id, file_path, logger):
"""
Create preview image with zoom-in capabilities
"""
if settings.jpg_previews == "":
logger.error("JPG preview folder is not set in settings file")
sys.exit(1)
if settings.jpg_previews_free != None:
disk_check = shutil.disk_usage(settings.jpg_previews)
if (disk_check.free / disk_check.total) < settings.jpg_previews_free:
logger.error("JPG storage location is running out of space ({}%) - {}".format(
round(disk_check.free / disk_check.total, 4) * 100,
settings.jpg_previews))
sys.exit(1)
preview_file_path = "{}/folder{}".format(settings.jpg_previews, str(folder_id))
preview_image = "{}/{}.jpg".format(preview_file_path, file_id)
zoom_folder = "{}/{}_files".format(preview_file_path, file_id)
# Remove tiles folder
if os.path.exists(zoom_folder):
shutil.rmtree(zoom_folder, ignore_errors=True)
# Create subfolder if it doesn't exists
os.makedirs(preview_file_path, exist_ok=True)
# deepzoom
creator = deepzoom.ImageCreator(tile_size=254,
tile_format='jpg',
image_quality=1.0,
resize_filter='antialias')
creator.create(file_path, "{}/{}".format(preview_file_path, file_id))
return True
def md5sum(md5_file, file):
# https://stackoverflow.com/a/7829658
filename = Path(file).name
md5_hash = hashlib.md5()
with open(file, "rb") as f:
# Read and update hash in chunks of 4K
for byte_block in iter(lambda: f.read(4096), b""):
md5_hash.update(byte_block)
file_md5 = md5_hash.hexdigest()
md5_from_file = md5_file[md5_file.file == filename]['md5'].to_string(index=False).strip()
if file_md5 == md5_from_file:
return 0
elif md5_from_file == 'Series([], )':
return 1
else:
return 1
def check_md5(md5_file, files):
"""
Compare hashes between files and what the md5 file says
:param md5_file:
:param files:
:return:
"""
inputs = zip(itertools.repeat(md5_file), files)
with Pool(settings.no_workers) as pool:
bad_files = pool.starmap(md5sum, inputs)
pool.close()
pool.join()
if sum(bad_files) > 0:
return 1, "{} Files Don't Match MD5 File".format(sum(bad_files))
else:
return 0, 0
def validate_md5(folder_path):
"""
Check if the MD5 file is valid
"""
md5_file = glob.glob("{}/*.md5".format(folder_path))
if len(md5_file) == 0:
exit_msg = "MD5 file not found"
return 1, exit_msg
if len(md5_file) > 1:
exit_msg = "Multiple MD5 files found"
return 1, exit_msg
else:
# Read md5 file
md5_file = pd.read_csv(md5_file[0], sep=' ', header=None, names=['md5', 'file'])
files = glob.glob("{}/*".format(folder_path))
# Exclude md5 file
files = [x for x in files if '.md5' not in x]
if len(files) != md5_file.shape[0]:
exit_msg = "No. of files ({}) mismatch MD5 file ({})".format(len(files), md5_file.shape[0])
return 1, exit_msg
res, results = check_md5(md5_file, files)
if res == 0:
exit_msg = "Valid MD5"
return 0, exit_msg
else:
exit_msg = results
return 1, exit_msg
def update_folder_stats(folder_id, logger):
"""
Update the stats for the folder
"""
payload = {'type': 'folder',
'folder_id': folder_id,
'api_key': settings.api_key,
'property': 'stats',
'value': '0'
}
r = requests.post('{}/api/update/{}'.format(settings.api_url, settings.project_alias),
data=payload)
query_results = json.loads(r.text.encode('utf-8'))
logger.info("update_folder_stats: {}".format(query_results))
if query_results["result"] is not True:
logger.error("API Returned Error: {}".format(query_results))
logger.error("Request: {}".format(str(r.request)))
logger.error("Headers: {}".format(r.headers))
logger.error("Payload: {}".format(payload))
sys.exit(1)
return True
def run_checks_folder_p(project_info, folder_path, logfile_folder, logger):
"""
Process a folder in parallel
"""
project_id = project_info['project_alias']
default_payload = {'api_key': settings.api_key}
r = requests.post('{}/api/projects/{}'.format(settings.api_url, settings.project_alias), data=default_payload)
if r.status_code != 200:
# Something went wrong
query_results = r.text.encode('utf-8')
logger.error("API Returned Error: {}".format(query_results))
sys.exit(1)
project_info = json.loads(r.text.encode('utf-8'))
project_checks = project_info['project_checks']
logger.info("Processing folder: {}".format(folder_path))
folder_name = os.path.basename(folder_path)
# Check if the folder exists in the database
folder_id = None
if len(project_info['folders']) > 0:
for folder in project_info['folders']:
logger.info("folder: {}".format(folder))
logger.info("FOLDER NEW: {}|{}|{}|{}|{}|{}".format(folder['folder'], folder_name, folder['folder_path'], folder_path, folder['folder'] == folder_name, folder['folder_path'] == folder_path))
if folder['folder'] == folder_name and folder['folder_path'] == folder_path:
folder_info = folder
folder_id = folder_info['folder_id']
delivered_to_dams = folder_info['delivered_to_dams']
logger.info("Folder exists: {}".format(folder_id))
# folder found, break loop
break
if folder_id is None:
# CREATE FOLDER
folder_date = settings.folder_date(folder_name)
payload = {
'type': 'folder',
'api_key': settings.api_key,
'folder': folder_name,
'folder_path': folder_path,
'folder_date': folder_date,
'project_id': project_info['project_id']
}
r = requests.post('{}/api/new/{}'.format(settings.api_url, settings.project_alias),
data=payload)
query_results = json.loads(r.text.encode('utf-8'))
logger.info("Creating folder record: {} - {} - {}".format(folder_path, payload, query_results))
if query_results["result"] == "error":
logger.error("API Returned Error: {}".format(query_results))
logger.error("Request: {}".format(str(r.request)))
logger.error("Headers: {}".format(r.headers))
logger.error("Payload: {}".format(payload))
sys.exit(1)
else:
folder_id = query_results["result"][0]['folder_id']
delivered_to_dams = 9
# if folder_id is None:
if 'folder_id' not in locals():
logger.error("Could not get folder_id for {}".format(folder_name))
sys.exit(1)
# Check if folder is ready or in DAMS
if delivered_to_dams == 0 or delivered_to_dams == 1:
# Folder ready for or delivered to DAMS, skip
logger.info("Folder ready for or delivered to for DAMS, skipping {}".format(folder_path))
return folder_id
# Check if QC has been run
r = requests.post('{}/api/folders/{}'.format(settings.api_url, folder_id), data=default_payload)
if r.status_code != 200:
# Something went wrong
logger.error(
"API ({}) Returned Error: {}".format('{}/api/folders/{}'.format(settings.api_url, folder_id), r.text))
logger.error("Request: {}".format(str(r.request)))
logger.error("Headers: {}".format(r.headers))
logger.error("Payload: {}".format(default_payload))
return folder_id
folder_info = json.loads(r.text.encode('utf-8'))
if folder_info['qc_status'] != "QC Pending":
# QC done, so skip
logger.info("Folder QC has been completed, skipping {}".format(folder_path))
return folder_id
# Tag folder as under verification
payload = {'type': 'folder',
'folder_id': folder_id,
'api_key': settings.api_key,
'property': 'checking_folder',
'value': 1
}
r = requests.post('{}/api/update/{}'.format(settings.api_url, settings.project_alias),
data=payload)
query_results = json.loads(r.text.encode('utf-8'))
if query_results["result"] is not True:
logger.error("API Returned Error: {}".format(query_results))
logger.error("Request: {}".format(str(r.request)))
logger.error("Headers: {}".format(r.headers))
logger.error("Payload: {}".format(payload))
return folder_id
# Check for deleted files
for file in folder_info['files']:
if len(glob.glob("{}/{}/{}.*".format(folder_path, settings.main_files_path, file['file_name']))) != 1:
# File not found, delete from db
payload = {'type': 'file',
'file_id': file['file_id'],
'api_key': settings.api_key,
'property': 'delete',
'value': True
}
r = requests.post('{}/api/update/{}'.format(settings.api_url, settings.project_alias),
data=payload)
query_results = json.loads(r.text.encode('utf-8'))
if query_results["result"] is not True:
logger.error("API Returned Error: {}".format(query_results))
logger.error("Request: {}".format(str(r.request)))
logger.error("Headers: {}".format(r.headers))
logger.error("Payload: {}".format(payload))
return folder_id
# Check if filename has spaces
folder_full_path = "{}/{}".format(folder_path, settings.main_files_path)
files = glob.glob("{}/*.*".format(folder_full_path))
for file in files:
if " " in file:
payload = {'type': 'folder',
'folder_id': folder_id,
'api_key': settings.api_key,
'property': 'filename_spaces',
'value': 1
}
r = requests.post('{}/api/update/{}'.format(settings.api_url, settings.project_alias),
data=payload)
query_results = json.loads(r.text.encode('utf-8'))
if query_results["result"] is not True:
logger.error("API Returned Error: {}".format(query_results))
logger.error("Request: {}".format(str(r.request)))
logger.error("Headers: {}".format(r.headers))
logger.error("Payload: {}".format(payload))
return folder_id
# Check if MD5 exists in tif folder
if len(glob.glob(folder_path + "/" + settings.main_files_path + "/*.md5")) == 1:
md5_exists = 0
else:
md5_exists = 1
payload = {'type': 'folder',
'folder_id': folder_id,
'api_key': settings.api_key,
'property': 'tif_md5_exists',
'value': md5_exists
}
r = requests.post('{}/api/update/{}'.format(settings.api_url, settings.project_alias),
data=payload)
query_results = json.loads(r.text.encode('utf-8'))
if query_results["result"] is not True:
logger.error("API Returned Error: {}".format(query_results))
logger.error("Request: {}".format(str(r.request)))
logger.error("Headers: {}".format(r.headers))
logger.error("Payload: {}".format(payload))
return folder_id
# Check if the MD5 file matches the contents of the folder
if md5_exists == 0:
md5_check, md5_error = validate_md5(folder_path + "/" + settings.main_files_path)
if md5_check == 0:
property = 'tif_md5_matches_ok'
else:
property = 'tif_md5_matches_error'
payload = {'type': 'folder',
'folder_id': folder_id,
'api_key': settings.api_key,
'property': property,
'value': md5_error
}
r = requests.post('{}/api/update/{}'.format(settings.api_url, settings.project_alias),
data=payload)
query_results = json.loads(r.text.encode('utf-8'))
if query_results["result"] is not True:
logger.error("API Returned Error: {}".format(query_results))
logger.error("Request: {}".format(str(r.request)))
logger.error("Headers: {}".format(r.headers))
logger.error("Payload: {}".format(payload))
return folder_id
# Check if MD5 exists in raw folder
if 'raw_pair' in project_checks:
if len(glob.glob(folder_path + "/" + settings.raw_files_path + "/*.md5")) == 1:
md5_raw_exists = 0
else:
md5_raw_exists = 1
payload = {'type': 'folder',
'folder_id': folder_id,
'api_key': settings.api_key,
'property': 'raw_md5_exists',
'value': md5_raw_exists
}
r = requests.post('{}/api/update/{}'.format(settings.api_url, settings.project_alias),
data=payload)
query_results = json.loads(r.text.encode('utf-8'))
if query_results["result"] is not True:
logger.error("API Returned Error: {}".format(query_results))
logger.error("Request: {}".format(str(r.request)))
logger.error("Headers: {}".format(r.headers))
logger.error("Payload: {}".format(payload))
return folder_id
# Check if the MD5 file of RAWS matches the contents of the folder
if md5_raw_exists == 0:
md5_check, md5_error = validate_md5(folder_path + "/" + settings.raw_files_path)
if md5_check == 0:
property = 'raw_md5_matches_ok'
else:
property = 'raw_md5_matches_error'
payload = {'type': 'folder',
'folder_id': folder_id,
'api_key': settings.api_key,
'property': property,
'value': md5_error
}
r = requests.post('{}/api/update/{}'.format(settings.api_url, settings.project_alias),
data=payload)
query_results = json.loads(r.text.encode('utf-8'))
if query_results["result"] is not True:
logger.error("API Returned Error: {}".format(query_results))
logger.error("Request: {}".format(str(r.request)))
logger.error("Headers: {}".format(r.headers))
logger.error("Payload: {}".format(payload))
return folder_id
else:
md5_raw_exists = 0
if settings.md5_required:
if md5_exists == 1 or md5_raw_exists == 1:
# Folder is missing md5 files
logger.info("Folder {} is missing md5 files".format(folder_path))
# Update folder stats
update_folder_stats(folder_id, logger)
return folder_id
payload = {'type': 'folder', 'folder_id': folder_id, 'api_key': settings.api_key, 'property': 'status0',
'value': ''}
r = requests.post('{}/api/update/{}'.format(settings.api_url, settings.project_alias),
data=payload)
query_results = json.loads(r.text.encode('utf-8'))
if query_results["result"] is not True:
logger.error("API Returned Error: {}".format(query_results))
logger.error("Request: {}".format(str(r.request)))
logger.error("Headers: {}".format(r.headers))
logger.error("Payload: {}".format(payload))
return folder_id
if os.path.isdir("{}/{}".format(folder_path, settings.main_files_path)) is False:
folder_status_msg = "Missing MAIN folder in {}".format(folder_path)
logger.info(folder_status_msg)
payload = {'type': 'folder', 'folder_id': folder_id, 'api_key': settings.api_key, 'property': 'status9',
'value': folder_status_msg}
r = requests.post('{}/api/update/{}'.format(settings.api_url, settings.project_alias),
data=payload)
query_results = json.loads(r.text.encode('utf-8'))
if query_results["result"] is not True:
logger.error("API Returned Error: {}".format(query_results))
logger.error("Request: {}".format(str(r.request)))
logger.error("Headers: {}".format(r.headers))
logger.error("Payload: {}".format(payload))
return folder_id
return folder_id
else:
logger.info("MAIN folder found in {}".format(folder_path))
folder_full_path = "{}/{}".format(folder_path, settings.main_files_path)
folder_full_path_files = glob.glob("{}/*".format(folder_full_path))
folder_full_path_files = [file for file in folder_full_path_files if Path(file).suffix != '.md5']
if 'raw_pair' in project_checks:
folder_raw_path = "{}/{}".format(folder_path, settings.raw_files_path)
folder_raw_path_files = glob.glob("{}/*".format(folder_raw_path))
folder_raw_path_files = [file for file in folder_raw_path_files if Path(file).suffix != '.md5']
if len(folder_full_path_files) != len(folder_raw_path_files):
folder_status_msg = "No. of files do not match (main: {}, raws: {})".format(len(folder_full_path_files), len(folder_raw_path_files))
payload = {'type': 'folder', 'folder_id': folder_id, 'api_key': settings.api_key, 'property': 'status1',
'value': folder_status_msg}
r = requests.post('{}/api/update/{}'.format(settings.api_url, settings.project_alias),
data=payload)
query_results = json.loads(r.text.encode('utf-8'))
if query_results["result"] is not True:
logger.error("API Returned Error: {}".format(query_results))
logger.error("Request: {}".format(str(r.request)))
logger.error("Headers: {}".format(r.headers))
logger.error("Payload: {}".format(payload))
return folder_id
else:
payload = {'type': 'folder', 'folder_id': folder_id, 'api_key': settings.api_key, 'property': 'status0',
'value': ""}
r = requests.post('{}/api/update/{}'.format(settings.api_url, settings.project_alias), data=payload)
query_results = json.loads(r.text.encode('utf-8'))
if query_results["result"] is not True:
logger.error("API Returned Error: {}".format(query_results))
logger.error("Request: {}".format(str(r.request)))
logger.error("Headers: {}".format(r.headers))
logger.error("Payload: {}".format(payload))
return folder_id
else:
payload = {'type': 'folder', 'folder_id': folder_id, 'api_key': settings.api_key, 'property': 'status0',
'value': ""}
r = requests.post('{}/api/update/{}'.format(settings.api_url, settings.project_alias), data=payload)
query_results = json.loads(r.text.encode('utf-8'))
if query_results["result"] is not True:
logger.error("API Returned Error: {}".format(query_results))
logger.error("Request: {}".format(str(r.request)))
logger.error("Headers: {}".format(r.headers))
logger.error("Payload: {}".format(payload))
return folder_id
# Get all files in the folder
files = glob.glob("{}/*.*".format(folder_full_path))
# Remove md5 files from list
files = [file for file in files if Path(file).suffix != '.md5']
if len(files) > 0:
preview_file_path = "{}/folder{}".format(settings.jpg_previews, str(folder_id))
# Create subfolder if it doesn't exists
if not os.path.exists(preview_file_path):
os.makedirs(preview_file_path)
###############
# Parallel
###############
no_tasks = len(files)
if settings.no_workers == 1:
print_str = "Started run of {notasks} tasks for {folder_path}"
print_str = print_str.format(notasks=str(locale.format_string("%d", no_tasks, grouping=True)), folder_path=folder_path)
logger.info(print_str)
# Process files in parallel
for file in files:
process_image_p(file, folder_path, folder_id, project_id, logfile_folder)
else:
print_str = "Started parallel run of {notasks} tasks on {workers} workers for {folder_path}"
print_str = print_str.format(notasks=str(locale.format_string("%d", no_tasks, grouping=True)), workers=str(
settings.no_workers), folder_path=folder_path)
logger.info(print_str)
# Process files in parallel
inputs = zip(files, itertools.repeat(folder_path), itertools.repeat(folder_id), itertools.repeat(project_id), itertools.repeat(logfile_folder))
with Pool(settings.no_workers) as pool:
pool.starmap(process_image_p, inputs)
pool.close()
pool.join()
# Run end-of-folder checks
if 'sequence' in project_checks:
no_tasks = len(files)
r = requests.post('{}/api/folders/{}'.format(settings.api_url, folder_id), data=default_payload)
if r.status_code != 200:
# Something went wrong
logger.error(
"API ({}) Returned Error: {}".format('{}/api/folders/{}'.format(settings.api_url, folder_id), r.text))
logger.error("Request: {}".format(str(r.request)))
logger.error("Headers: {}".format(r.headers))
logger.error("Payload: {}".format(default_payload))
return folder_id
folder_info = json.loads(r.text.encode('utf-8'))
if settings.no_workers == 1:
print_str = "Started run of {notasks} tasks for 'sequence'"
print_str = print_str.format(notasks=str(locale.format_string("%d", no_tasks, grouping=True)))
logger.info(print_str)
# Process files in parallel
for file in files:
sequence_validate(file, folder_info)
else:
print_str = "Started parallel run of {notasks} tasks on {workers} workers for 'sequence'"
print_str = print_str.format(notasks=str(locale.format_string("%d", no_tasks, grouping=True)), workers=str(
settings.no_workers))
logger.info(print_str)
# Process files in parallel
inputs = zip(files, itertools.repeat(folder_info))
with Pool(settings.no_workers) as pool:
pool.starmap(sequence_validate, inputs)
pool.close()
pool.join()
# Update folder stats
update_folder_stats(folder_id, logger)
logger.info("Folder {} completed".format(folder_path))
return folder_id
def process_image_p(filename, folder_path, folder_id, project_id, logfile_folder):
"""
Run checks for image files
"""
import settings
import random
import logging
import time
import subprocess
import requests
random_int = random.randint(1, 1000)
# Logging
current_time = time.strftime("%Y%m%d_%H%M%S", time.localtime())
logfile = '{}/{}_{}.log'.format(logfile_folder, current_time, random_int)
logging.basicConfig(filename=logfile, filemode='a', level=logging.DEBUG,
format='%(levelname)s | %(asctime)s | %(filename)s:%(lineno)s | %(message)s',
datefmt='%y-%b-%d %H:%M:%S')
logger = logging.getLogger("osprey_{}".format(random_int))
main_file_path = filename
logger.info("filename: {}".format(main_file_path))
folder_id = int(folder_id)
filename_stem = Path(filename).stem
filename_suffix = Path(filename).suffix[1:]
file_name = Path(filename).name
default_payload = {'api_key': settings.api_key}
# s = requests.Session()
r = requests.post('{}/api/folders/{}'.format(settings.api_url, folder_id), data=default_payload)
if r.status_code != 200:
# Something went wrong
logger.error("API ({}) Returned Error: {}".format('{}/api/folders/{}'.format(settings.api_url, folder_id), r.text))
logger.error("Request: {}".format(str(r.request)))
logger.error("Headers: {}".format(r.headers))
logger.error("Payload: {}".format(default_payload))
return False
folder_info = json.loads(r.text.encode('utf-8'))
r = requests.post('{}/api/projects/{}'.format(settings.api_url, settings.project_alias), data=default_payload)
if r.status_code != 200:
# Something went wrong
query_results = r.text.encode('utf-8')
logger.error("API Returned Error: {}".format(query_results))
sys.exit(1)
project_info = json.loads(r.text.encode('utf-8'))
project_checks = project_info['project_checks']
logger.info("project_checks: {}".format(project_checks))
# Check if file exists, insert if not
file_id = None
for file in folder_info['files']:
# logger.info("file: {}".format(file))
if file['file_name'] == filename_stem:
file_id = file['file_id']
file_info = file
break
if file_id is None:
# Get modified date for file
file_timestamp_float = os.path.getmtime(main_file_path)
file_timestamp = datetime.fromtimestamp(file_timestamp_float).strftime('%Y-%m-%d %H:%M:%S')
payload = {
'api_key': settings.api_key,
'type': "file",
'folder_id': folder_id,
'filename': filename_stem,
'timestamp': file_timestamp,
'filetype': filename_suffix.lower(),
}
r = requests.post('{}/api/new/{}'.format(settings.api_url, settings.project_alias), data=payload)
if r.status_code != 200:
# Something went wrong
logger.error("API Returned Error: {}".format(r.text))
logger.error("Request: {}".format(str(r.request)))
logger.error("Headers: {}".format(r.headers))
logger.error("Payload: {}".format(payload))
return False
else:
logger.info("API Returned: {}".format(r.text))
file_info = json.loads(r.text.encode('utf-8'))['result']
logging.debug("new_file:{}".format(file_info))
file_id = file_info[0]['file_id']
file_uid = file_info[0]['uid']
# Get filesize from TIF:
logging.debug("file_size_pre: {}".format(main_file_path))
file_size = os.path.getsize(main_file_path)
logging.debug("file_size: {} {}".format(main_file_path, file_size))
filetype = filename_suffix
payload = {
'api_key': settings.api_key,
'type': "filesize",
'file_id': file_id,
'filetype': filetype.lower(),
'filesize': file_size
}
r = requests.post('{}/api/new/{}'.format(settings.api_url, settings.project_alias), data=payload)
if r.status_code != 200:
# Something went wrong
logger.error("API Returned Error: {}".format(r.text))
logger.error("Request: {}".format(str(r.request)))
logger.error("Headers: {}".format(r.headers))
logger.error("Payload: {}".format(payload))
return False
# Refresh folder info
r = requests.post('{}/api/folders/{}'.format(settings.api_url, folder_id), data=default_payload)
if r.status_code != 200: