Error running Tutorial for VcfHunter Genetic linkage analysis

[jhtrujillo]

I got the following error, when I am running the tutorial:

raceback (most recent call last):
File "/biodata5/mapa-genetico-jhtrujillo/tools/VcfHunter/TestTools/../bin/vcf2popNew.1.0.py", line 881, in
if name == "main": main()
File "/biodata5/mapa-genetico-jhtrujillo/tools/VcfHunter/TestTools/../bin/vcf2popNew.1.0.py", line 804, in main
Khi_stat = KhiSquare(liste[0], Accession_header, dico_acc, DicoSegregation)
File "/biodata5/mapa-genetico-jhtrujillo/tools/VcfHunter/TestTools/../bin/vcf2popNew.1.0.py", line 326, in KhiSquare
chi2, p = stats.chisquare(FreqObs, f_exp=FreqTheor)
File "/home/estuvar4/.local/lib/python3.9/site-packages/scipy/stats/_stats_py.py", line 6911, in chisquare
return power_divergence(f_obs, f_exp=f_exp, ddof=ddof, axis=axis,
File "/home/estuvar4/.local/lib/python3.9/site-packages/scipy/stats/_stats_py.py", line 6753, in power_divergence
raise ValueError(msg)
ValueError: For each axis slice, the sum of the observed frequencies must agree with the sum of the expected frequencies to a relative tolerance of 1e-08, but the percent differences are

[guiguimartin]

I assume you are running the tutorial_GeneticLinkage.md? I see that you are using python3.9. Maybe your version of python is too up to date for those programs that were developed on python3.4.10... I have observed that some functions have changed when switching to a newer version but I have not yet had time to update the scripts to these new versions of python. You can try to use them with python 3.4.10, it should work.

[sanderdebacker]

I would advise creating a virtual environment based on Python3.4.10.
Working in this environment will not mess with your default Python3 installation.