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Linking pggb output to Panache input #38

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SingingMeerkat opened this issue Apr 16, 2024 · 1 comment
Open

Linking pggb output to Panache input #38

SingingMeerkat opened this issue Apr 16, 2024 · 1 comment

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@SingingMeerkat
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Interest have been expressed about visualizing graphs from pggb into Panache ( cf nf-core/pangenome#197), but the steps to convert formats are currently unclear.

Some documentation highlighting how to convert pggb's output into Panache's input would be welcome.

I cannot dedicate much time to it right now, but maybe that's something that @francoissabot can look into? I at least create the issue to look into it later.

@francoissabot
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We have a prototype for GFA parser in a PAV matrix, will see if we can adapt it. Normally it will work for PGGB as well as for Mningraph/Cactus and GFA1.1 formats

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