fix: various minor fixes

Steinbeck-Lab · Dec 13, 2024 · c74c046 · c74c046
1 parent 6bd626f
commit c74c046
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Showing 7 changed files with 113 additions and 261 deletions.
diff --git a/FrankenPHP.Alpine.Dockerfile b/FrankenPHP.Alpine.Dockerfile
diff --git a/deployment/php.ini b/deployment/php.ini
@@ -6,7 +6,7 @@ realpath_cache_size = 16M
 realpath_cache_ttl = 360
 max_input_time = 0
 register_argc_argv = 0
-memory_limit = 8G
+memory_limit = 16G
 
 [Opcache]
 opcache.enable = 1

diff --git a/docker-compose.yml b/docker-compose.yml
@@ -27,11 +27,11 @@ services:
             - mailpit
             - cm
     cm:
-        image: "nfdi4chem/cheminformatics-microservice:dev-latest"
+        image: "nfdi4chem/cheminformatics-microservice:latest-lite"
         environment:
             HOMEPAGE_URL:  "https://docs.api.naturalproducts.net"
         ports:
-            - "81:80"
+            - '${API_PORT:-8001}:80'
         healthcheck:
             test: ["CMD", "curl", "-f", "http://localhost:81/latest/chem/health"]
             interval: 1m30s

diff --git a/docs/.vitepress/config.mts b/docs/.vitepress/config.mts
@@ -11,8 +11,8 @@ export default defineConfig({
     siteTitle: '',
 
     head: [
-      ['link', { rel: "manifest", href: "/coconut/site.webmanifest"}],
-      ['link', { rel: "icon", href: "/coconut/favicon.ico"}],
+      ['link', { rel: "manifest", href: "/site.webmanifest"}],
+      ['link', { rel: "icon", href: "/favicon.ico"}],
       ['meta', { name: "theme-color", content: "#ffffff"}],
     ],
 

diff --git a/resources/views/components/welcome.blade.php b/resources/views/components/welcome.blade.php
@@ -1,91 +1,113 @@
-<div class="p-6 lg:p-8 bg-white border-b border-gray-200">
-    <x-application-logo class="block h-12 w-auto" />
+<div>
+    <div class="p-6 lg:p-8 bg-white border-b border-gray-200">
+        <x-application-logo class="block h-12 w-auto" />
 
-    <p class="mt-6 text-gray-500 leading-relaxed">
-        Welcome to our submission portal, where you can easily share and showcase your natural product collections. Whether you're a researcher, enthusiast, or curator, our platform provides a seamless experience for uploading, curating, and publishing your curated collections. With intuitive tools and a user-friendly interface, COCONUT empowers you to share your datasets at ease.
-    </p>
-</div>
+        <p class="mt-6 text-gray-500 leading-relaxed">
+            Welcome to our submission portal, where you can easily share and showcase your natural product collections.
+            Whether you're a researcher, enthusiast, or curator, our platform provides a seamless experience for
+            uploading, curating, and publishing your curated collections. With intuitive tools and a user-friendly
+            interface, COCONUT empowers you to share your datasets at ease.
+        </p>
+    </div>
 
-<div class="bg-gray-200 bg-opacity-25 grid grid-cols-1 md:grid-cols-2 gap-6 lg:gap-8 p-6 lg:p-8">
-    <div>
-        <div class="flex items-center">
-            <svg xmlns="http://www.w3.org/2000/svg" fill="none" viewBox="0 0 24 24" stroke-width="1.5" class="w-6 h-6 stroke-gray-400">
-                <path stroke-linecap="round" stroke-linejoin="round" d="M12 6.042A8.967 8.967 0 006 3.75c-1.052 0-2.062.18-3 .512v14.25A8.987 8.987 0 016 18c2.305 0 4.408.867 6 2.292m0-14.25a8.966 8.966 0 016-2.292c1.052 0 2.062.18 3 .512v14.25A8.987 8.987 0 0018 18a8.967 8.967 0 00-6 2.292m0-14.25v14.25" />
-            </svg>
-            <h2 class="ms-3 text-xl font-semibold text-gray-900">
-                <a>Documentation</a>
-            </h2>
-        </div>
+    <div class="bg-gray-200 bg-opacity-25 grid grid-cols-1 md:grid-cols-2 gap-6 lg:gap-8 p-6 lg:p-8">
+        <div>
+            <div class="flex items-center">
+                <svg xmlns="http://www.w3.org/2000/svg" fill="none" viewBox="0 0 24 24" stroke-width="1.5"
+                    class="w-6 h-6 stroke-gray-400">
+                    <path stroke-linecap="round" stroke-linejoin="round"
+                        d="M12 6.042A8.967 8.967 0 006 3.75c-1.052 0-2.062.18-3 .512v14.25A8.987 8.987 0 016 18c2.305 0 4.408.867 6 2.292m0-14.25a8.966 8.966 0 016-2.292c1.052 0 2.062.18 3 .512v14.25A8.987 8.987 0 0018 18a8.967 8.967 0 00-6 2.292m0-14.25v14.25" />
+                </svg>
+                <h2 class="ms-3 text-xl font-semibold text-gray-900">
+                    <a>Documentation</a>
+                </h2>
+            </div>
 
-        <p class="mt-4 text-gray-500 text-sm leading-relaxed">
-            The COCONUT database offers comprehensive documentation that covers every facet of its features. Whether you're a newcomer or seasoned user, we suggest exploring the documentation thoroughly from start to finish to maximize your understanding and utilization of the database.
-        </p>
+            <p class="mt-4 text-gray-500 text-sm leading-relaxed">
+                The COCONUT database offers comprehensive documentation that covers every facet of its features. Whether
+                you're a newcomer or seasoned user, we suggest exploring the documentation thoroughly from start to
+                finish to maximize your understanding and utilization of the database.
+            </p>
 
-        <p class="mt-4 text-sm">
-            <a href="/guidelines" class="inline-flex items-center font-semibold text-indigo-700">
-                Explore the documentation
+            <p class="mt-4 text-sm">
+                <a href="/guidelines" class="inline-flex items-center font-semibold text-indigo-700">
+                    Explore the documentation
 
-                <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 20 20" class="ms-1 w-5 h-5 fill-indigo-500">
-                    <path fill-rule="evenodd" d="M5 10a.75.75 0 01.75-.75h6.638L10.23 7.29a.75.75 0 111.04-1.08l3.5 3.25a.75.75 0 010 1.08l-3.5 3.25a.75.75 0 11-1.04-1.08l2.158-1.96H5.75A.75.75 0 015 10z" clip-rule="evenodd" />
+                    <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 20 20" class="ms-1 w-5 h-5 fill-indigo-500">
+                        <path fill-rule="evenodd"
+                            d="M5 10a.75.75 0 01.75-.75h6.638L10.23 7.29a.75.75 0 111.04-1.08l3.5 3.25a.75.75 0 010 1.08l-3.5 3.25a.75.75 0 11-1.04-1.08l2.158-1.96H5.75A.75.75 0 015 10z"
+                            clip-rule="evenodd" />
+                    </svg>
+                </a>
+            </p>
+        </div>
+
+        <div>
+            <div class="flex items-center">
+                <svg xmlns="http://www.w3.org/2000/svg" fill="none" viewBox="0 0 24 24" stroke-width="1.5"
+                    class="w-6 h-6 stroke-gray-400">
+                    <path stroke-linecap="round"
+                        d="M15.75 10.5l4.72-4.72a.75.75 0 011.28.53v11.38a.75.75 0 01-1.28.53l-4.72-4.72M4.5 18.75h9a2.25 2.25 0 002.25-2.25v-9a2.25 2.25 0 00-2.25-2.25h-9A2.25 2.25 0 002.25 7.5v9a2.25 2.25 0 002.25 2.25z" />
                 </svg>
-            </a>
-        </p>
-    </div>
+                <h2 class="ms-3 text-xl font-semibold text-gray-900">
+                    <a>API</a>
+                </h2>
+            </div>
 
-    <div>
-        <div class="flex items-center">
-            <svg xmlns="http://www.w3.org/2000/svg" fill="none" viewBox="0 0 24 24" stroke-width="1.5" class="w-6 h-6 stroke-gray-400">
-                <path stroke-linecap="round" d="M15.75 10.5l4.72-4.72a.75.75 0 011.28.53v11.38a.75.75 0 01-1.28.53l-4.72-4.72M4.5 18.75h9a2.25 2.25 0 002.25-2.25v-9a2.25 2.25 0 00-2.25-2.25h-9A2.25 2.25 0 002.25 7.5v9a2.25 2.25 0 002.25 2.25z" />
-            </svg>
-            <h2 class="ms-3 text-xl font-semibold text-gray-900">
-                <a>API</a>
-            </h2>
-        </div>
+            <p class="mt-4 text-gray-500 text-sm leading-relaxed">
+                With intuitive endpoints and comprehensive documentation, our API empowers developers to harness the
+                full potential of COCONUT's vast collection of natural product data.
+            </p>
 
-        <p class="mt-4 text-gray-500 text-sm leading-relaxed">
-            With intuitive endpoints and comprehensive documentation, our API empowers developers to harness the full potential of COCONUT's vast collection of natural product data. 
-        </p>
+            <p class="mt-4 text-sm">
+                <a href="/api-documentation" class="inline-flex items-center font-semibold text-indigo-700">
+                    Deep dive now
 
-        <p class="mt-4 text-sm">
-            <a href="/api-documentation" class="inline-flex items-center font-semibold text-indigo-700">
-                Deep dive now
+                    <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 20 20" class="ms-1 w-5 h-5 fill-indigo-500">
+                        <path fill-rule="evenodd"
+                            d="M5 10a.75.75 0 01.75-.75h6.638L10.23 7.29a.75.75 0 111.04-1.08l3.5 3.25a.75.75 0 010 1.08l-3.5 3.25a.75.75 0 11-1.04-1.08l2.158-1.96H5.75A.75.75 0 015 10z"
+                            clip-rule="evenodd" />
+                    </svg>
+                </a>
+            </p>
+        </div>
 
-                <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 20 20" class="ms-1 w-5 h-5 fill-indigo-500">
-                    <path fill-rule="evenodd" d="M5 10a.75.75 0 01.75-.75h6.638L10.23 7.29a.75.75 0 111.04-1.08l3.5 3.25a.75.75 0 010 1.08l-3.5 3.25a.75.75 0 11-1.04-1.08l2.158-1.96H5.75A.75.75 0 015 10z" clip-rule="evenodd" />
+        <div>
+            <div class="flex items-center">
+                <svg xmlns="http://www.w3.org/2000/svg" fill="none" viewBox="0 0 24 24" stroke-width="1.5"
+                    class="w-6 h-6 stroke-gray-400">
+                    <path stroke-linecap="round" stroke-linejoin="round"
+                        d="M2.25 15.75l5.159-5.159a2.25 2.25 0 013.182 0l5.159 5.159m-1.5-1.5l1.409-1.409a2.25 2.25 0 013.182 0l2.909 2.909m-18 3.75h16.5a1.5 1.5 0 001.5-1.5V6a1.5 1.5 0 00-1.5-1.5H3.75A1.5 1.5 0 002.25 6v12a1.5 1.5 0 001.5 1.5zm10.5-11.25h.008v.008h-.008V8.25zm.375 0a.375.375 0 11-.75 0 .375.375 0 01.75 0z" />
                 </svg>
-            </a>
-        </p>
-    </div>
+                <h2 class="ms-3 text-xl font-semibold text-gray-900">
+                    <a href="/admin/collections">My Submissions</a>
+                </h2>
+            </div>
 
-    <div>
-        <div class="flex items-center">
-            <svg xmlns="http://www.w3.org/2000/svg" fill="none" viewBox="0 0 24 24" stroke-width="1.5" class="w-6 h-6 stroke-gray-400">
-                <path stroke-linecap="round" stroke-linejoin="round" d="M2.25 15.75l5.159-5.159a2.25 2.25 0 013.182 0l5.159 5.159m-1.5-1.5l1.409-1.409a2.25 2.25 0 013.182 0l2.909 2.909m-18 3.75h16.5a1.5 1.5 0 001.5-1.5V6a1.5 1.5 0 00-1.5-1.5H3.75A1.5 1.5 0 002.25 6v12a1.5 1.5 0 001.5 1.5zm10.5-11.25h.008v.008h-.008V8.25zm.375 0a.375.375 0 11-.75 0 .375.375 0 01.75 0z" />
-            </svg>
-            <h2 class="ms-3 text-xl font-semibold text-gray-900">
-                <a href="/admin/collections">My Submissions</a>
-            </h2>
+            <p class="mt-4 text-gray-500 text-sm leading-relaxed">
+                Upload, curate, and publish your natural product collections seamlessly using intuitive tools and a
+                user-friendly COCONUT interface.
+            </p>
         </div>
 
-        <p class="mt-4 text-gray-500 text-sm leading-relaxed">
-            Upload, curate, and publish your natural product collections seamlessly using intuitive tools and a user-friendly COCONUT interface.
-        </p>
-    </div>
+        <div>
+            <div class="flex items-center">
+                <svg xmlns="http://www.w3.org/2000/svg" fill="none" viewBox="0 0 24 24" stroke-width="1.5"
+                    class="w-6 h-6 stroke-gray-400">
+                    <path stroke-linecap="round" stroke-linejoin="round"
+                        d="M16.5 10.5V6.75a4.5 4.5 0 10-9 0v3.75m-.75 11.25h10.5a2.25 2.25 0 002.25-2.25v-6.75a2.25 2.25 0 00-2.25-2.25H6.75a2.25 2.25 0 00-2.25 2.25v6.75a2.25 2.25 0 002.25 2.25z" />
+                </svg>
+                <h2 class="ms-3 text-xl font-semibold text-gray-900">
+                    Need Help?
+                </h2>
+            </div>
 
-    <div>
-        <div class="flex items-center">
-            <svg xmlns="http://www.w3.org/2000/svg" fill="none" viewBox="0 0 24 24" stroke-width="1.5" class="w-6 h-6 stroke-gray-400">
-                <path stroke-linecap="round" stroke-linejoin="round" d="M16.5 10.5V6.75a4.5 4.5 0 10-9 0v3.75m-.75 11.25h10.5a2.25 2.25 0 002.25-2.25v-6.75a2.25 2.25 0 00-2.25-2.25H6.75a2.25 2.25 0 00-2.25 2.25v6.75a2.25 2.25 0 002.25 2.25z" />
-            </svg>
-            <h2 class="ms-3 text-xl font-semibold text-gray-900">
-                Need Help?
-            </h2>
+            <p class="mt-4 text-gray-500 text-sm leading-relaxed">
+                Contact us at: [email protected]
+                <br />
+                Website: https://cheminf.uni-jena.de/
+            </p>
         </div>
-
-        <p class="mt-4 text-gray-500 text-sm leading-relaxed">
-            Contact us at: [email protected]
-            <br/>
-            Website: https://cheminf.uni-jena.de/
-        </p>
     </div>
+
 </div>