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LOTUS integration related tasks #312

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sriramkanakam87 opened this issue Dec 10, 2024 · 0 comments
Open
8 tasks

LOTUS integration related tasks #312

sriramkanakam87 opened this issue Dec 10, 2024 · 0 comments

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@sriramkanakam87
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sriramkanakam87 commented Dec 10, 2024

  • API integration for species curation
  • Widget to show similar organisms. Show similar organisms in the edit page and option to select molecules and assign them to another organism
  • Option to query an api to get the organism details
  • I noticed recently that some people are adding curating natural product structures on Wikipedia. Many species are documented there anyway. I think it would be great to link to such pages. In particular, the compounds should be relatively easy to find via the SMILES on the Wikipedia pages.
  • We should link species and compounds to their respective Wikipedia articles, if available.
  • Species curation
  • Merge spp and spp. to spp.
  • Create - Genus spp. for all species on the platform
  • General species terms (typos/casing) curation
  • Display organism details just like how lotus displays on its website
  • Reimport data
  • Store the data as JSON
  • Create views to enable rich view
  • Organism taxonomy from lotus
  • MetaboLights like tree of life navigation
  • Whenever the user types the organism name, on blur, search for an IRI and fill the field
  • API to search is in the command class: MapOrganismNamesToOGG
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